Citrus Sinensis ID: 016157
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 394 | 2.2.26 [Sep-21-2011] | |||||||
| Q80Y20 | 664 | Alkylated DNA repair prot | yes | no | 0.751 | 0.445 | 0.402 | 2e-57 | |
| Q07G10 | 628 | Alkylated DNA repair prot | yes | no | 0.654 | 0.410 | 0.402 | 6e-56 | |
| A1A4L5 | 664 | Alkylated DNA repair prot | yes | no | 0.728 | 0.432 | 0.381 | 3e-54 | |
| Q96BT7 | 664 | Alkylated DNA repair prot | yes | no | 0.738 | 0.438 | 0.379 | 1e-52 | |
| Q95K79 | 664 | Alkylated DNA repair prot | N/A | no | 0.703 | 0.417 | 0.370 | 4e-52 | |
| P49957 | 279 | tRNA (carboxymethyluridin | yes | no | 0.368 | 0.519 | 0.476 | 9e-36 | |
| Q9P272 | 454 | Putative methyltransferas | no | no | 0.365 | 0.317 | 0.462 | 1e-34 | |
| Q80WQ4 | 447 | Putative methyltransferas | no | no | 0.365 | 0.322 | 0.468 | 2e-34 | |
| Q08DH3 | 453 | Putative methyltransferas | no | no | 0.360 | 0.313 | 0.468 | 5e-34 | |
| Q10224 | 228 | tRNA (carboxymethyluridin | yes | no | 0.357 | 0.618 | 0.471 | 2e-33 |
| >sp|Q80Y20|ALKB8_MOUSE Alkylated DNA repair protein alkB homolog 8 OS=Mus musculus GN=Alkbh8 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 223 bits (568), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 130/323 (40%), Positives = 189/323 (58%), Gaps = 27/323 (8%)
Query: 77 SSSIKSTPELEKKYVHRVYDAIAPHFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGKY 136
+ S K ELE+K+VH+VY+ IA HFSSTR + WP++ FL +LPSGS+V D GCGNGKY
Sbjct: 361 TESSKEALELEQKHVHQVYNEIASHFSSTRHSPWPRIVEFLKALPSGSIVADIGCGNGKY 420
Query: 137 LGLNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTES 196
LG+N D + +GCD S +L+ IC +R + LV DA+ +P RS DA ISIAV+HH +T
Sbjct: 421 LGINKDLYMIGCDRSQNLVDICRERQFQALVCDALAVPVRSGSCDACISIAVIHHFATAE 480
Query: 197 RRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGPGSPRVRSPS 256
RR +A++EL R+++ G LI VWA+EQE K+ +K+ L K + + G + +
Sbjct: 481 RRVEALQELARLLRPGGQALIYVWAMEQEYKNQKSKY--LRGKRISQ----GDKDELNSA 534
Query: 257 ARTLESIPETEDNGSEEQGKEPKQSVPDKLWESISLTSQSEDDS--VISQDVKIITNQ-- 312
T E + G E +P SV S S+T + E S V + ++ I N+
Sbjct: 535 TSTEEFLVNQTPEGVNE---DPALSV-----NSSSITKEEEYKSRKVPNSELPIHINRTC 586
Query: 313 ---QEYFVPWHLPYHRAEVSGASACALANGLAKKDDKKGAVVYNRYYHVFCDGELERLAS 369
Q+ VPWHL + G +G+A D + V++RYYHVFCDGELE
Sbjct: 587 FHSQDVLVPWHLKRN----PGKDKAIEPSGVAGCPDP--SPVFHRYYHVFCDGELEASCQ 640
Query: 370 DIDNAVVVDRFFDKSNWCIVLQR 392
+ + ++ ++D+ NWC+VLQ+
Sbjct: 641 AVGDVSILQSYYDQGNWCVVLQK 663
|
Catalyzes the methylation of 5-carboxymethyl uridine to 5-methylcarboxymethyl uridine at the wobble position of the anticodon loop in tRNA. Catalyzes the last step in the formation of 5-methylcarboxymethyl uridine at the wobble position of the anticodon loop in target tRNA. Has a preference for tRNA(Arg) and tRNA(Glu), and does not bind tRNA(Lys). Required for normal survival after DNA damage. May inhibit apoptosis and promote cell survival and angiogenesis. Mus musculus (taxid: 10090) EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 2EC: 2EC: 9 |
| >sp|Q07G10|ALKB8_XENTR Alkylated DNA repair protein alkB homolog 8 OS=Xenopus tropicalis GN=alkbh8 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 218 bits (555), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 124/308 (40%), Positives = 174/308 (56%), Gaps = 50/308 (16%)
Query: 86 LEKKYVHRVYDAIAPHFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGKYLGLNPDCFF 145
LE++YVH+VYD IA HFSSTR WPK+ FL SLP GSLV D GCGNGKYLG+N D
Sbjct: 369 LEREYVHKVYDDIAGHFSSTRHTPWPKIGDFLASLPKGSLVADVGCGNGKYLGVNKDLCM 428
Query: 146 VGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEEL 205
+GCD S +L+ IC +R E V DA+++P+R+ DA ISIAV+HH +TE RR A++EL
Sbjct: 429 IGCDRSKNLVDICRERTFEAFVCDALSVPFRAGAFDACISIAVIHHFATEERRIAALQEL 488
Query: 206 VRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGPGSPRVRSPSARTLESIPE 265
+R+++KG LI VWA+EQE K + KY++E S + PS+ L
Sbjct: 489 IRLLRKGGKALIYVWALEQEYKKNKS-------KYLKE-----SKTSQGPSSDAL----- 531
Query: 266 TEDNGSEEQGKEPKQSVPDKLWESISLTSQSEDDSVISQDVKIITNQQEYFVPWHL-PYH 324
G+ K P L + S SQD+ VPWHL P +
Sbjct: 532 ----GTNLAVKAP-------------LPIHTNRTSFHSQDL---------LVPWHLKPTN 565
Query: 325 RAEVSGASACALANGLAKKDDKKGAVVYNRYYHVFCDGELERLASDIDNAVVVDRFFDKS 384
+++V+ N + + VY+R+YHVFC+GELE + + + N V + D+
Sbjct: 566 KSKVTP------ENKEQNEKEHGPDSVYHRFYHVFCEGELEAMCNRLSNVAVQHSYHDQG 619
Query: 385 NWCIVLQR 392
NWC++L++
Sbjct: 620 NWCVILEK 627
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Catalyzes the methylation of 5-carboxymethyl uridine to 5-methylcarboxymethyl uridine at the wobble position of the anticodon loop in tRNA. Catalyzes the last step in the formation of 5-methylcarboxymethyl uridine at the wobble position of the anticodon loop in target tRNA. Has a preference for tRNA(Arg) and tRNA(Glu), and does not bind tRNA(Lys). Required for normal survival after DNA damage. Xenopus tropicalis (taxid: 8364) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 2 EC: 9 |
| >sp|A1A4L5|ALKB8_BOVIN Alkylated DNA repair protein alkB homolog 8 OS=Bos taurus GN=ALKBH8 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 213 bits (541), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 125/328 (38%), Positives = 178/328 (54%), Gaps = 41/328 (12%)
Query: 79 SIKSTPELEKKYVHRVYDAIAPHFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGKYLG 138
S K +LE+ YVHRVY+ IA HFSSTR WP + FL +LPSGSLV D GCGNGKYLG
Sbjct: 363 SDKEALQLEQDYVHRVYEEIARHFSSTRHTPWPHIVEFLKALPSGSLVADIGCGNGKYLG 422
Query: 139 LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRR 198
+N + + +GCD S +L+ IC +R ++ V DA+ +P RS DA ISIAV+HH +T RR
Sbjct: 423 INNELYMIGCDHSQNLVDICRERQYQAFVCDALAVPIRSGSCDACISIAVIHHFATAERR 482
Query: 199 KKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGPGSPRVRSPSAR 258
A++ELVR+++ G LI VWA+EQE + KY+ E R
Sbjct: 483 VAALQELVRLLRPGGKALIYVWAMEQE-------YNKKKSKYLRE-------------NR 522
Query: 259 TLESIPETEDNGSEEQGKEPKQSVPD----KLWESISLTSQSEDDSVISQDVK-----II 309
T + + E N + Q KQ +P+ S+S + +D S++V I
Sbjct: 523 TSQGMKEEISNDASVQELLVKQ-LPNVGNQDSAHSVSSINDFQDGGCNSKNVANSKLPIH 581
Query: 310 TNQ-----QEYFVPWHLPYHRAEVSGASACALANGLAKKDDKKGAVVYNRYYHVFCDGEL 364
TN+ Q+ VPWH + L +D V++RYYHVFC+GEL
Sbjct: 582 TNRTSFHSQDLLVPWHF---KGNPGKDKRVEPFGPLGSRDP---GPVFHRYYHVFCEGEL 635
Query: 365 ERLASDIDNAVVVDRFFDKSNWCIVLQR 392
E ++N ++ ++D+ NWC++LQ+
Sbjct: 636 EAACRTLNNISILQSYYDQGNWCVILQK 663
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Catalyzes the methylation of 5-carboxymethyl uridine to 5-methylcarboxymethyl uridine at the wobble position of the anticodon loop in tRNA. Catalyzes the last step in the formation of 5-methylcarboxymethyl uridine at the wobble position of the anticodon loop in target tRNA. Has a preference for tRNA(Arg) and tRNA(Glu), and does not bind tRNA(Lys). Required for normal survival after DNA damage. May inhibit apoptosis and promote cell survival and angiogenesis. Bos taurus (taxid: 9913) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 2 EC: 9 |
| >sp|Q96BT7|ALKB8_HUMAN Alkylated DNA repair protein alkB homolog 8 OS=Homo sapiens GN=ALKBH8 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 207 bits (527), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 123/324 (37%), Positives = 177/324 (54%), Gaps = 33/324 (10%)
Query: 79 SIKSTPELEKKYVHRVYDAIAPHFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGKYLG 138
S K LE++YVH+VY+ IA HFSSTR WP + FL +LPSGS+V D GCGNGKYLG
Sbjct: 363 SDKEASRLEQEYVHQVYEEIAGHFSSTRHTPWPHIVEFLKALPSGSIVADIGCGNGKYLG 422
Query: 139 LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRR 198
+N + + +GCD S +L+ IC +R + V DA+ +P RS DA ISIAV+HH +T RR
Sbjct: 423 INKELYMIGCDRSQNLVDICRERQFQAFVCDALAVPVRSGSCDACISIAVIHHFATAERR 482
Query: 199 KKAIEELVRVVKKGSLVLITVWAVEQE---DKSLVTKWTPLTQKYVEEWIGPGS------ 249
A++E+VR+++ G LI VWA+EQE KS + +Q EE S
Sbjct: 483 VAALQEIVRLLRPGGKALIYVWAMEQEYNKQKSKYLRGNRNSQGKKEEMNSDTSVQRSLV 542
Query: 250 PRVRSPSAR-TLESIPETEDNGSEEQGKEPKQSVPDKLWESISLTSQSEDDSVISQDVKI 308
++R +R + S+P D S+E G +Q KL ++ T S SQDV
Sbjct: 543 EQMRDMGSRDSASSVPRIND--SQEGGCNSRQVSNSKLPVHVNRT------SFYSQDV-- 592
Query: 309 ITNQQEYFVPWHLPYHRAEVSGASACALANGLAKKDDKKGAVVYNRYYHVFCDGELERLA 368
VPWHL + + +D + V++RYYHVF +GELE
Sbjct: 593 -------LVPWHL---KGNPDKGKPVEPFGPIGSQDP---SPVFHRYYHVFREGELEGAC 639
Query: 369 SDIDNAVVVDRFFDKSNWCIVLQR 392
+ + ++ ++D+ NWC++LQ+
Sbjct: 640 RTVSDVRILQSYYDQGNWCVILQK 663
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Catalyzes the methylation of 5-carboxymethyl uridine to 5-methylcarboxymethyl uridine at the wobble position of the anticodon loop in tRNA. Catalyzes the last step in the formation of 5-methylcarboxymethyl uridine at the wobble position of the anticodon loop in target tRNA. Has a preference for tRNA(Arg) and tRNA(Glu), and does not bind tRNA(Lys). Required for normal survival after DNA damage. May inhibit apoptosis and promote cell survival and angiogenesis. Homo sapiens (taxid: 9606) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 2 EC: 9 |
| >sp|Q95K79|ALKB8_MACFA Alkylated DNA repair protein alkB homolog 8 OS=Macaca fascicularis GN=ALKBH8 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 205 bits (522), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 120/324 (37%), Positives = 174/324 (53%), Gaps = 47/324 (14%)
Query: 86 LEKKYVHRVYDAIAPHFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGKYLGLNPDCFF 145
LE++YVH+VY+ IA HFSSTR WP + FL +LPSGS+V D GCGNGKYLG+N + +
Sbjct: 370 LEQEYVHQVYEEIAGHFSSTRHTPWPHIVEFLKALPSGSIVADIGCGNGKYLGVNKELYM 429
Query: 146 VGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEEL 205
VGCD S +L+ IC +R + V DA+ +P RS DA ISIAV+HH +T RR A++E+
Sbjct: 430 VGCDRSQNLVDICRERQFQAFVCDALAVPVRSGSCDACISIAVIHHFATAERRVAALQEI 489
Query: 206 VRVVKKGSLVLITVWAVEQEDKSLVTKW-----------------TPLTQKYVEEWIGPG 248
VR+++ G LI VWA+EQE +K+ T + + VE+ G
Sbjct: 490 VRLLRPGGKALIYVWAMEQEYNKQKSKYLKGNRNSQGKKEEMNSDTSVQRSLVEQMPDMG 549
Query: 249 SPRVRSPSARTLESIPETEDNGSEEQGKEPKQSVPDKLWESISLTSQSEDDSVISQDVKI 308
S + S+P D S+E G +Q KL ++ T S SQD+
Sbjct: 550 -------SRDSASSVPRIND--SQEGGCNSRQVSNSKLPIHVNRT------SFYSQDM-- 592
Query: 309 ITNQQEYFVPWHLPYHRAEVSGASACALANGLAKKDDKKGAVVYNRYYHVFCDGELERLA 368
VPWHL + + +D + V++RYYHVF +GELE L
Sbjct: 593 -------LVPWHL---KGNPDKGKPVEPFGPIGSQDP---SPVFHRYYHVFREGELEALC 639
Query: 369 SDIDNAVVVDRFFDKSNWCIVLQR 392
+ + ++ ++D+ NWC++LQ+
Sbjct: 640 RTVSDVRILQSYYDQGNWCVILQK 663
|
Catalyzes the methylation of 5-carboxymethyl uridine to 5-methylcarboxymethyl uridine at the wobble position of the anticodon loop in tRNA. Catalyzes the last step in the formation of 5-methylcarboxymethyl uridine at the wobble position of the anticodon loop in target tRNA. Has a preference for tRNA(Arg) and tRNA(Glu), and does not bind tRNA(Lys). Required for normal survival after DNA damage. May inhibit apoptosis and promote cell survival and angiogenesis. Macaca fascicularis (taxid: 9541) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 2 EC: 9 |
| >sp|P49957|TRM9_YEAST tRNA (carboxymethyluridine(34)-5-O)-methyltransferase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TRM9 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 151 bits (381), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 70/147 (47%), Positives = 99/147 (67%), Gaps = 2/147 (1%)
Query: 80 IKSTPELEKKYVHRVYDAIAPHFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGKYLGL 139
I E E++YVH+VY+ IAPHFS TR+ WP V FL + P GS+ +D GCGNGKYLG+
Sbjct: 3 INQAAEKEQEYVHKVYNEIAPHFSQTRYKPWPIVTQFLKTRPMGSIGIDVGCGNGKYLGV 62
Query: 140 NPDCFFVGCDISPSLIKIC--VDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESR 197
NPD + +G D S LI+ ++ + +LVAD +NLP++++ D AISIAV+HH ST R
Sbjct: 63 NPDIYIIGSDRSDGLIECARGINPSYNLLVADGLNLPHKNETFDFAISIAVVHHWSTRER 122
Query: 198 RKKAIEELVRVVKKGSLVLITVWAVEQ 224
R + I ++ +++G LI WA+EQ
Sbjct: 123 RVEVIRHVLSKLRQGGQALIYCWALEQ 149
|
Required for the methylation of the wobble bases at position 34 in tRNA. Appears to have a role in stress-response. Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 2 EC: 9 |
| >sp|Q9P272|K1456_HUMAN Putative methyltransferase KIAA1456 OS=Homo sapiens GN=KIAA1456 PE=2 SV=3 | Back alignment and function description |
|---|
Score = 147 bits (371), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 67/145 (46%), Positives = 96/145 (66%)
Query: 85 ELEKKYVHRVYDAIAPHFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGKYLGLNPDCF 144
+LEK++VH VY++ AP+FS + WP+V FL GSL+ D GCG GKYL +N
Sbjct: 7 QLEKQHVHNVYESTAPYFSDLQSKAWPRVRQFLQEQKPGSLIADIGCGTGKYLKVNSQVH 66
Query: 145 FVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEE 204
VGCD L++I +RG E +V D +NLP+R + DA ISI V+HH ST+ RR +AI+E
Sbjct: 67 TVGCDYCGPLVEIARNRGCEAMVCDNLNLPFRDEGFDAIISIGVIHHFSTKQRRIRAIKE 126
Query: 205 LVRVVKKGSLVLITVWAVEQEDKSL 229
+ RV+ G ++I VWA+EQ+++
Sbjct: 127 MARVLVPGGQLMIYVWAMEQKNRHF 151
|
Homo sapiens (taxid: 9606) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q80WQ4|K1456_MOUSE Putative methyltransferase KIAA1456 OS=Mus musculus GN=Kiaa1456 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 147 bits (370), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 68/145 (46%), Positives = 95/145 (65%)
Query: 85 ELEKKYVHRVYDAIAPHFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGKYLGLNPDCF 144
ELEK++VH VY+ AP+F+ + WP+V FL GSLV D GCG GKYL +N
Sbjct: 7 ELEKRHVHSVYENTAPYFTDLQSKAWPRVRQFLQDQKPGSLVADIGCGTGKYLKVNSQVH 66
Query: 145 FVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEE 204
+GCD L++I +RG EV+V D +NLP+R DA ISI V+HH ST+ RR +AI+E
Sbjct: 67 TLGCDYCGPLVEIARNRGCEVMVCDNLNLPFRDQGFDAIISIGVIHHFSTKERRIRAIKE 126
Query: 205 LVRVVKKGSLVLITVWAVEQEDKSL 229
+ RV+ G ++I VWA+EQ+++
Sbjct: 127 MARVLAPGGQLMIYVWAMEQKNRRF 151
|
Mus musculus (taxid: 10090) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q08DH3|K1456_BOVIN Putative methyltransferase KIAA1456 homolog OS=Bos taurus PE=2 SV=1 | Back alignment and function description |
|---|
Score = 145 bits (366), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 67/143 (46%), Positives = 95/143 (66%)
Query: 85 ELEKKYVHRVYDAIAPHFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGKYLGLNPDCF 144
+LEK++VH VY++ AP+FS + WP+V FL GSL+ D GCG GKYL +N
Sbjct: 7 QLEKQHVHDVYESTAPYFSDLQSKAWPRVRQFLQEQKPGSLIADIGCGTGKYLKVNSQVH 66
Query: 145 FVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEE 204
+GCD L++I RG EV+V D +NLP+R DA ISI V+HH ST+ RR +AI+E
Sbjct: 67 TLGCDYCAPLVEIARSRGCEVMVCDNLNLPFRDQGFDAIISIGVIHHFSTKQRRIRAIKE 126
Query: 205 LVRVVKKGSLVLITVWAVEQEDK 227
+ RV+ G ++I VWA+EQ+++
Sbjct: 127 MARVLVPGGQLMIYVWAMEQKNR 149
|
Bos taurus (taxid: 9913) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q10224|TRM9_SCHPO tRNA (carboxymethyluridine(34)-5-O)-methyltransferase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=trm9 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 143 bits (361), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 67/142 (47%), Positives = 99/142 (69%), Gaps = 1/142 (0%)
Query: 85 ELEKKYVHRVYDAIAPHFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGKYLGLNPDCF 144
E E +YVH+VYD IA HFS TR+ WP V FL SLP GS+ +D GCGNGKY +NP+ +
Sbjct: 4 EYENEYVHQVYDKIATHFSDTRYKPWPVVEKFLKSLPLGSVGVDIGCGNGKYQKVNPNVY 63
Query: 145 FVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEE 204
+G D L+KI + G ++++D +++P+ S+ D A+SIAV+HH S E+RR +A++E
Sbjct: 64 MIGSDRCVKLVKIASNLG-PMVISDGLHVPHPSNRFDFALSIAVIHHFSNENRRLQAVQE 122
Query: 205 LVRVVKKGSLVLITVWAVEQED 226
++R + KG L VWA+EQ++
Sbjct: 123 VLRPLVKGGKALFFVWALEQKN 144
|
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 394 | ||||||
| 255545596 | 390 | S-adenosylmethionine-dependent methyltra | 0.984 | 0.994 | 0.728 | 1e-159 | |
| 302141903 | 391 | unnamed protein product [Vitis vinifera] | 0.984 | 0.992 | 0.722 | 1e-155 | |
| 224066905 | 369 | predicted protein [Populus trichocarpa] | 0.890 | 0.951 | 0.715 | 1e-150 | |
| 225459401 | 347 | PREDICTED: alkylated DNA repair protein | 0.873 | 0.991 | 0.765 | 1e-146 | |
| 449441742 | 391 | PREDICTED: alkylated DNA repair protein | 0.903 | 0.910 | 0.692 | 1e-142 | |
| 363807694 | 375 | uncharacterized protein LOC100807751 [Gl | 0.941 | 0.989 | 0.643 | 1e-138 | |
| 356508138 | 374 | PREDICTED: alkylated DNA repair protein | 0.934 | 0.983 | 0.640 | 1e-135 | |
| 297846670 | 378 | hypothetical protein ARALYDRAFT_473716 [ | 0.895 | 0.933 | 0.657 | 1e-128 | |
| 115448705 | 367 | Os02g0750500 [Oryza sativa Japonica Grou | 0.809 | 0.869 | 0.689 | 1e-127 | |
| 222623679 | 327 | hypothetical protein OsJ_08398 [Oryza sa | 0.809 | 0.975 | 0.689 | 1e-126 |
| >gi|255545596|ref|XP_002513858.1| S-adenosylmethionine-dependent methyltransferase, putative [Ricinus communis] gi|223546944|gb|EEF48441.1| S-adenosylmethionine-dependent methyltransferase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 566 bits (1458), Expect = e-159, Method: Compositional matrix adjust.
Identities = 284/390 (72%), Positives = 326/390 (83%), Gaps = 2/390 (0%)
Query: 6 VFDVLRATRCFHKFWEPFSVPITCGNCVFHPGISGTMREVKVKGASDFCTLGADGESSIH 65
+FDVLRA+R + + F+ PI V GI MRE+KVKG S + +DGES I
Sbjct: 2 IFDVLRASRFSETYRQAFARPIIVIGRVCLFGIFRAMREIKVKGPSGLSNVASDGESQIQ 61
Query: 66 -SVSTGEDQRCSSSSIKSTPELEKKYVHRVYDAIAPHFSSTRFAKWPKVATFLNSLPSGS 124
S+S E Q CSSSS++STPE+EKKYVH VYDAIAPHFSSTRFAKWPKVATFLNSLPSGS
Sbjct: 62 LSLSADEKQVCSSSSVQSTPEIEKKYVHHVYDAIAPHFSSTRFAKWPKVATFLNSLPSGS 121
Query: 125 LVLDAGCGNGKYLGLNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAI 184
L+LDAGCGNGKYLGLNPDC+F+GCDIS LIKIC DRGHEVLV DAVNLPYR+ F DAAI
Sbjct: 122 LILDAGCGNGKYLGLNPDCYFIGCDISAPLIKICADRGHEVLVGDAVNLPYRTGFSDAAI 181
Query: 185 SIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEW 244
SIAVLHHLSTE+RRKKAIEELVRVVKKG LVLITVWAVEQED SLV KWTPL+QKYVEEW
Sbjct: 182 SIAVLHHLSTENRRKKAIEELVRVVKKGGLVLITVWAVEQEDGSLVAKWTPLSQKYVEEW 241
Query: 245 IGPGSPRVRSPSARTLESIPETEDNGSEEQGKEPKQSVPDKLWESISLTSQSEDDSVISQ 304
IGPGSPRVRSPS+ TLESIPETE+N S+E ++ +++ ++ +++ SQ+E +SV +
Sbjct: 242 IGPGSPRVRSPSSFTLESIPETEENNSKELIQDSEKNADEEFMKTMDSISQTEHNSVF-K 300
Query: 305 DVKIITNQQEYFVPWHLPYHRAEVSGASACALANGLAKKDDKKGAVVYNRYYHVFCDGEL 364
D K NQQEYFVPWHLPYHRAEVSGASACALA+GLAKKDDKKGAVVYNRYYHVF +GEL
Sbjct: 301 DEKNAKNQQEYFVPWHLPYHRAEVSGASACALASGLAKKDDKKGAVVYNRYYHVFSEGEL 360
Query: 365 ERLASDIDNAVVVDRFFDKSNWCIVLQRTS 394
ERL + + NAVVVDRFFDKSNWC++L++TS
Sbjct: 361 ERLVTGMKNAVVVDRFFDKSNWCVILEKTS 390
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|302141903|emb|CBI19106.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 553 bits (1426), Expect = e-155, Method: Compositional matrix adjust.
Identities = 281/389 (72%), Positives = 323/389 (83%), Gaps = 1/389 (0%)
Query: 6 VFDVLRATRCFHKFWEPFSVPITCGNCVFHPGISGTMREVKVKGASDFCTLGADGESSIH 65
VF+ R +CF + + F++PIT + +PGI T RE KV AS CTL +DGES
Sbjct: 2 VFNAARLKKCFCQSFGAFTLPITFTDTTCYPGIFKTRREGKVDMASSLCTLVSDGESHTQ 61
Query: 66 -SVSTGEDQRCSSSSIKSTPELEKKYVHRVYDAIAPHFSSTRFAKWPKVATFLNSLPSGS 124
S+ +DQ C S+++STPE+EKKYVH VYDAIAPHFSSTRFAKWPKVATFL SLPSGS
Sbjct: 62 PSLIVSQDQICPVSNVQSTPEIEKKYVHHVYDAIAPHFSSTRFAKWPKVATFLKSLPSGS 121
Query: 125 LVLDAGCGNGKYLGLNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAI 184
LVLDAGCGNGKYLGL+PDCFF+GCDIS LI IC DR HEV+VADAVNLPYR+ FGDAAI
Sbjct: 122 LVLDAGCGNGKYLGLSPDCFFIGCDISAPLINICADRDHEVVVADAVNLPYRTGFGDAAI 181
Query: 185 SIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEW 244
SIAVLHHLSTESRRKKAI+ELVRVVKKG LVLITVWAVEQED+SLVTKWTPL+ KYVEEW
Sbjct: 182 SIAVLHHLSTESRRKKAIQELVRVVKKGGLVLITVWAVEQEDRSLVTKWTPLSPKYVEEW 241
Query: 245 IGPGSPRVRSPSARTLESIPETEDNGSEEQGKEPKQSVPDKLWESISLTSQSEDDSVISQ 304
IGP SPR+RSPS+ TLESIPETE+NGS E K+ K+ + L +++ T Q+EDDS+ +
Sbjct: 242 IGPSSPRIRSPSSFTLESIPETEENGSGEHLKDLKEISNENLQDTMHSTCQTEDDSMTFK 301
Query: 305 DVKIITNQQEYFVPWHLPYHRAEVSGASACALANGLAKKDDKKGAVVYNRYYHVFCDGEL 364
K I + QEYFVPWHLPYHRAEVSGASACALANGLAKKDDKKGAVVYNRYYHVF +GEL
Sbjct: 302 IKKNIESHQEYFVPWHLPYHRAEVSGASACALANGLAKKDDKKGAVVYNRYYHVFSEGEL 361
Query: 365 ERLASDIDNAVVVDRFFDKSNWCIVLQRT 393
ERL S +DNAV+VD+FFDKSNWCI+L++T
Sbjct: 362 ERLVSGMDNAVIVDQFFDKSNWCIILEKT 390
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224066905|ref|XP_002302272.1| predicted protein [Populus trichocarpa] gi|222843998|gb|EEE81545.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 536 bits (1382), Expect = e-150, Method: Compositional matrix adjust.
Identities = 264/369 (71%), Positives = 298/369 (80%), Gaps = 18/369 (4%)
Query: 42 MREVKVKGASDFCTLGADGESSIHSVSTGEDQRCSSSSIKSTPELEKKYVHRVYDAIAPH 101
MR +KVKG S TL +DGES + + E++ SSSS++STPE+EK YVHRVYDAIAPH
Sbjct: 1 MRGIKVKGLSCLRTLVSDGESHVQPMPLVEEETGSSSSVQSTPEIEKNYVHRVYDAIAPH 60
Query: 102 FSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGKYLGLNPDCFFVGCDISPSLIKICVDR 161
FSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGKYLG NPDC FVGCDIS LIKIC DR
Sbjct: 61 FSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGKYLGFNPDCTFVGCDISGPLIKICADR 120
Query: 162 GHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 221
GHEVLVADAVNLPYR+ FGDAAISIAVLHHLSTE+RRK+AI+ELVR VKKG L+LITVWA
Sbjct: 121 GHEVLVADAVNLPYRTGFGDAAISIAVLHHLSTENRRKRAIDELVRAVKKGGLILITVWA 180
Query: 222 VEQEDKSLVTKWTPLTQKYVEEWIGPGSPRVRSPSARTLESIPETEDNGSEEQ------G 275
VEQED+SLVTKWTPL QKYV+EWIGPGSPR+RSPS+ TLESIPETE+N E +
Sbjct: 181 VEQEDRSLVTKWTPLNQKYVDEWIGPGSPRIRSPSSITLESIPETENNSKEHEKDTESLN 240
Query: 276 KEPKQSVPDKLWESISLTSQSEDDS------------VISQDVKIITNQQEYFVPWHLPY 323
P + + E+ + + + E D+ S+D + NQQEYFVPWHLPY
Sbjct: 241 HNPSPITLESIPETENNSKEHEKDTESLNHEFKGTMPSTSKDDSSVQNQQEYFVPWHLPY 300
Query: 324 HRAEVSGASACALANGLAKKDDKKGAVVYNRYYHVFCDGELERLASDIDNAVVVDRFFDK 383
HRAEVSGASACAL NGLAKKDDKKGAVVYNRYYHVF +GELERL S ++NAVVVDRFFDK
Sbjct: 301 HRAEVSGASACALENGLAKKDDKKGAVVYNRYYHVFSEGELERLVSGMNNAVVVDRFFDK 360
Query: 384 SNWCIVLQR 392
SNWCI+LQ+
Sbjct: 361 SNWCIILQK 369
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225459401|ref|XP_002284289.1| PREDICTED: alkylated DNA repair protein alkB homolog 8 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 523 bits (1348), Expect = e-146, Method: Compositional matrix adjust.
Identities = 264/345 (76%), Positives = 298/345 (86%), Gaps = 1/345 (0%)
Query: 50 ASDFCTLGADGESSIH-SVSTGEDQRCSSSSIKSTPELEKKYVHRVYDAIAPHFSSTRFA 108
AS CTL +DGES S+ +DQ C S+++STPE+EKKYVH VYDAIAPHFSSTRFA
Sbjct: 2 ASSLCTLVSDGESHTQPSLIVSQDQICPVSNVQSTPEIEKKYVHHVYDAIAPHFSSTRFA 61
Query: 109 KWPKVATFLNSLPSGSLVLDAGCGNGKYLGLNPDCFFVGCDISPSLIKICVDRGHEVLVA 168
KWPKVATFL SLPSGSLVLDAGCGNGKYLGL+PDCFF+GCDIS LI IC DR HEV+VA
Sbjct: 62 KWPKVATFLKSLPSGSLVLDAGCGNGKYLGLSPDCFFIGCDISAPLINICADRDHEVVVA 121
Query: 169 DAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKS 228
DAVNLPYR+ FGDAAISIAVLHHLSTESRRKKAI+ELVRVVKKG LVLITVWAVEQED+S
Sbjct: 122 DAVNLPYRTGFGDAAISIAVLHHLSTESRRKKAIQELVRVVKKGGLVLITVWAVEQEDRS 181
Query: 229 LVTKWTPLTQKYVEEWIGPGSPRVRSPSARTLESIPETEDNGSEEQGKEPKQSVPDKLWE 288
LVTKWTPL+ KYVEEWIGP SPR+RSPS+ TLESIPETE+NGS E K+ K+ + L +
Sbjct: 182 LVTKWTPLSPKYVEEWIGPSSPRIRSPSSFTLESIPETEENGSGEHLKDLKEISNENLQD 241
Query: 289 SISLTSQSEDDSVISQDVKIITNQQEYFVPWHLPYHRAEVSGASACALANGLAKKDDKKG 348
++ T Q+EDDS+ + K I + QEYFVPWHLPYHRAEVSGASACALANGLAKKDDKKG
Sbjct: 242 TMHSTCQTEDDSMTFKIKKNIESHQEYFVPWHLPYHRAEVSGASACALANGLAKKDDKKG 301
Query: 349 AVVYNRYYHVFCDGELERLASDIDNAVVVDRFFDKSNWCIVLQRT 393
AVVYNRYYHVF +GELERL S +DNAV+VD+FFDKSNWCI+L++T
Sbjct: 302 AVVYNRYYHVFSEGELERLVSGMDNAVIVDQFFDKSNWCIILEKT 346
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449441742|ref|XP_004138641.1| PREDICTED: alkylated DNA repair protein alkB homolog 8-like [Cucumis sativus] gi|449490102|ref|XP_004158508.1| PREDICTED: alkylated DNA repair protein alkB homolog 8-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 509 bits (1312), Expect = e-142, Method: Compositional matrix adjust.
Identities = 248/358 (69%), Positives = 293/358 (81%), Gaps = 2/358 (0%)
Query: 35 HPGISGTMREVKVKGASDFCTLGADGESSIHSVSTGEDQRCSSSSIKSTPELEKKYVHRV 94
H ++ M+E+K+KG S+ + E+ H+ + Q C++S+++ TPE+EKKYVHRV
Sbjct: 34 HFRLNSAMKEIKIKGGSNADPHPLNDET--HAQLSCAIQGCTASNVQCTPEIEKKYVHRV 91
Query: 95 YDAIAPHFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGKYLGLNPDCFFVGCDISPSL 154
YDAIAPHFSSTRFAKWPKVA+FL+SLP GSLVLDAGCGNGKYLG N +CFF+GCDIS L
Sbjct: 92 YDAIAPHFSSTRFAKWPKVASFLSSLPLGSLVLDAGCGNGKYLGYNSNCFFIGCDISAQL 151
Query: 155 IKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSL 214
IKIC +RGHEVLVADAVNLPYR+ FGDAAISIAVLHHLSTE+RRKKAIEEL+RVVKKG L
Sbjct: 152 IKICNERGHEVLVADAVNLPYRTGFGDAAISIAVLHHLSTENRRKKAIEELIRVVKKGGL 211
Query: 215 VLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGPGSPRVRSPSARTLESIPETEDNGSEEQ 274
VLITVWAVEQEDKSL+TKW PL++KYVEEW+GPGSPRVRSPS+ LESIPE +N S
Sbjct: 212 VLITVWAVEQEDKSLLTKWMPLSEKYVEEWVGPGSPRVRSPSSMALESIPEMNENNSGIC 271
Query: 275 GKEPKQSVPDKLWESISLTSQSEDDSVISQDVKIITNQQEYFVPWHLPYHRAEVSGASAC 334
K+ K+++ + E+ SQSE+D ++ QQEYFVPWHLPYHRAEVSG SA
Sbjct: 272 LKDSKENLTGSIPENKPPPSQSENDLANCNHENLLKTQQEYFVPWHLPYHRAEVSGTSAS 331
Query: 335 ALANGLAKKDDKKGAVVYNRYYHVFCDGELERLASDIDNAVVVDRFFDKSNWCIVLQR 392
ALA+GLAKKDDKK AVVYNRYYHVF +GELE L S +DNAVVVDRF+DKSNWCIVL++
Sbjct: 332 ALASGLAKKDDKKAAVVYNRYYHVFSEGELEGLISGMDNAVVVDRFYDKSNWCIVLEK 389
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|363807694|ref|NP_001242166.1| uncharacterized protein LOC100807751 [Glycine max] gi|255639634|gb|ACU20111.1| unknown [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 497 bits (1280), Expect = e-138, Method: Compositional matrix adjust.
Identities = 251/390 (64%), Positives = 296/390 (75%), Gaps = 19/390 (4%)
Query: 6 VFDVLRATRCFHKFWEPFSVPITCGNCVFHPGISGTMREVKVKGASDFCTLGADGESSI- 64
+ VL+A+R + E + I CV S +M+E+ K S CTL + E I
Sbjct: 2 IHSVLKASRFQNPRREALVLTIAISGCVCRLAFS-SMKEINCKVDSSSCTLAPNREPCIT 60
Query: 65 HSVS-TGEDQRCSSSSIKSTPELEKKYVHRVYDAIAPHFSSTRFAKWPKVATFLNSLPSG 123
S+S +G SS S+KSTPE+EKK+VH VYDAIAPHFS+TRFAKWPKVA FL+SLP G
Sbjct: 61 ESLSVSGNGTTTSSMSVKSTPEIEKKFVHHVYDAIAPHFSATRFAKWPKVAAFLSSLPLG 120
Query: 124 SLVLDAGCGNGKYLGLNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAA 183
SLVLDAGCGNGKYLGLN DCFF+GCDISPSLIKIC DR HEVLVADAVNLPYR+ FGDAA
Sbjct: 121 SLVLDAGCGNGKYLGLNQDCFFMGCDISPSLIKICSDREHEVLVADAVNLPYRTGFGDAA 180
Query: 184 ISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEE 243
ISIAVLHHLSTE+RR+KAIEELVRVVKKG VLITVWAVEQED L+TKWTPL +KYV+E
Sbjct: 181 ISIAVLHHLSTENRRRKAIEELVRVVKKGGRVLITVWAVEQEDSKLITKWTPLNEKYVDE 240
Query: 244 WIGPGSPRVRSPSARTLESIPETEDNGSEEQGKEPKQSVPDKLWESISLTSQSEDDSVIS 303
W+GPGSP R+PS+ +LESIPE+E + S E + ++ + E
Sbjct: 241 WVGPGSPHTRAPSSSSLESIPESEVSTSGEHMEVCHEAHASRYLE--------------- 285
Query: 304 QDVKIITNQQEYFVPWHLPYHRAEVSGASACALANGLAKKDDKKGAVVYNRYYHVFCDGE 363
+ K I NQQEYFVPWHLPYHRAE+SGASA ALA GLA KDDKKGAVVYNRYYHVF +GE
Sbjct: 286 -EEKNIKNQQEYFVPWHLPYHRAEISGASAEALAAGLATKDDKKGAVVYNRYYHVFSEGE 344
Query: 364 LERLASDIDNAVVVDRFFDKSNWCIVLQRT 393
LE L ++I+NA++VD+FFDKSNWCI+L++T
Sbjct: 345 LESLTTEINNAIIVDQFFDKSNWCIILEKT 374
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356508138|ref|XP_003522817.1| PREDICTED: alkylated DNA repair protein alkB homolog 8-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 486 bits (1252), Expect = e-135, Method: Compositional matrix adjust.
Identities = 251/392 (64%), Positives = 299/392 (76%), Gaps = 24/392 (6%)
Query: 6 VFDVLRATRCFHKFWEPFSVPITCGNCVFHPGISGTMREVKVKGASDFCTLGADGESSI- 64
+ VL+A+R + + + I+ CV+ S +M+E+ K S CTL + E I
Sbjct: 2 IHSVLKASRFLNPRRQTLGLTISVSGCVYRLAFS-SMKEINCKVDSSSCTLAPNREPCIT 60
Query: 65 HSVSTGEDQRCSSSSIKSTPELEKKYVHRVYDAIAPHFSSTRFAKWPKVATFLNSLPSGS 124
S+S + SS+S+KSTPE+EKKYVH VYDAIAPHFS+TRFAKWPKVA FL+SLP GS
Sbjct: 61 DSLSVSGNCTTSSTSVKSTPEIEKKYVHHVYDAIAPHFSATRFAKWPKVAAFLSSLPLGS 120
Query: 125 LVLDAGCGNGKYLGLNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAI 184
LV DAGCGNGKYLGLN DCFF+GCDISPSLIKIC+DR HEVLVADAVNLPYR+ FGD AI
Sbjct: 121 LVFDAGCGNGKYLGLNQDCFFIGCDISPSLIKICLDREHEVLVADAVNLPYRTGFGDVAI 180
Query: 185 SIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEW 244
SIAVLHHLSTE+RR+KAIEELVRVVKKG LVLITVWAVEQED L+TKWTPL +KYV+EW
Sbjct: 181 SIAVLHHLSTENRRRKAIEELVRVVKKGGLVLITVWAVEQEDSKLITKWTPLNEKYVDEW 240
Query: 245 IGPGSPRVRSPSARTLESIPETEDNGSEEQGKEPKQSVPDKLWESISLTSQSEDDSVISQ 304
+GPGSPR R+PS+ +LESIPE+E + S E + ++ +S+
Sbjct: 241 VGPGSPRTRAPSSSSLESIPESEVSRSGEH-------------------MEVCNEPHVSR 281
Query: 305 DV---KIITNQQEYFVPWHLPYHRAEVSGASACALANGLAKKDDKKGAVVYNRYYHVFCD 361
D+ K I NQQEYFVPWHLPYHRAE+SGASA ALA GLA KDDKKGAVVYNRYYHVF +
Sbjct: 282 DLEEEKNIKNQQEYFVPWHLPYHRAEISGASAEALAAGLATKDDKKGAVVYNRYYHVFSE 341
Query: 362 GELERLASDIDNAVVVDRFFDKSNWCIVLQRT 393
GELE L + I+NA +VD+FFDKSNWCI+L++T
Sbjct: 342 GELESLTTGINNARIVDQFFDKSNWCIILEKT 373
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297846670|ref|XP_002891216.1| hypothetical protein ARALYDRAFT_473716 [Arabidopsis lyrata subsp. lyrata] gi|297337058|gb|EFH67475.1| hypothetical protein ARALYDRAFT_473716 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 464 bits (1194), Expect = e-128, Method: Compositional matrix adjust.
Identities = 246/374 (65%), Positives = 287/374 (76%), Gaps = 21/374 (5%)
Query: 42 MREVKVKGASDFCTLGADGESSIHSVSTGEDQRCSSSSIKSTPELEKKYVHRVYDAIAPH 101
MR++KVK S +D E + R SS S+KSTPE+EKKYVHRVYDAIAPH
Sbjct: 1 MRDIKVKSDSKEFLTSSDEEEETVQIIESVSIRESSLSVKSTPEIEKKYVHRVYDAIAPH 60
Query: 102 FSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGKYLGLNPDCFFVGCDISPSLIKICVDR 161
FSSTRFAKWPKVA FL SLP GS++LDAGCGNGKYLGLNP CFF+GCDIS LIKIC D+
Sbjct: 61 FSSTRFAKWPKVAAFLESLPPGSVILDAGCGNGKYLGLNPSCFFIGCDISHPLIKICSDK 120
Query: 162 GHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 221
G EV+VADAVNLPYR +FGDAAISIAVLHHLSTE+RRKKAIEELVRVVK G VLITVWA
Sbjct: 121 GQEVVVADAVNLPYREEFGDAAISIAVLHHLSTENRRKKAIEELVRVVKPGGYVLITVWA 180
Query: 222 VEQEDKSLVTKWTPLTQKYVEEWIGPG----SPRVRSPSARTLESIPETEDNGSEEQGK- 276
EQED SL+TKWTPL+ KYVEEW+GPG SPRVR+ +LESIPETE + E++ +
Sbjct: 181 AEQEDTSLLTKWTPLSAKYVEEWVGPGSPMNSPRVRNNPFFSLESIPETEVSTKEQKAEN 240
Query: 277 ----------EPKQSVPDKLWESI------SLTSQSEDDSVISQDVKIITNQQEYFVPWH 320
E ++S ++ ESI S+ Q +++SV + +QQEYFVPWH
Sbjct: 241 SPFIGLESIPESEESTREQRGESIIPETKASVVEQKDENSVDESLEALKKSQQEYFVPWH 300
Query: 321 LPYHRAEVSGASACALANGLAKKDDKKGAVVYNRYYHVFCDGELERLASDIDNAVVVDRF 380
LPYHRAEVSGASA ALA+GLAKKDD+KGAVVYNRYYHVF +GELERLAS + NA++VDRF
Sbjct: 301 LPYHRAEVSGASASALASGLAKKDDRKGAVVYNRYYHVFSEGELERLASGVGNAMIVDRF 360
Query: 381 FDKSNWCIVLQRTS 394
+DKSNWCIVLQ+ +
Sbjct: 361 YDKSNWCIVLQKAA 374
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|115448705|ref|NP_001048132.1| Os02g0750500 [Oryza sativa Japonica Group] gi|46390207|dbj|BAD15638.1| methyltransferase-like [Oryza sativa Japonica Group] gi|113537663|dbj|BAF10046.1| Os02g0750500 [Oryza sativa Japonica Group] gi|215678876|dbj|BAG95313.1| unnamed protein product [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
|---|
Score = 459 bits (1182), Expect = e-127, Method: Compositional matrix adjust.
Identities = 226/328 (68%), Positives = 265/328 (80%), Gaps = 9/328 (2%)
Query: 66 SVSTGEDQRCSSSSIKSTPELEKKYVHRVYDAIAPHFSSTRFAKWPKVATFLNSLPSGSL 125
+VST + CSS ++STP++EKKYVHRVYDAIAPHFSSTRFAKWPKVA FLNSL GS+
Sbjct: 47 TVSTEGNNSCSS--VQSTPDIEKKYVHRVYDAIAPHFSSTRFAKWPKVAGFLNSLRPGSV 104
Query: 126 VLDAGCGNGKYLGLNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAIS 185
+LDAGCGNGKYLG NPDC F+GCDISP LI IC RGHEVLVADAVNLPYR +FGDAAIS
Sbjct: 105 ILDAGCGNGKYLGFNPDCLFIGCDISPPLIDICAGRGHEVLVADAVNLPYRDNFGDAAIS 164
Query: 186 IAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWI 245
IAVLHHLST++RR+KAIEEL+RVV+KG LVLITVWAVEQEDKSL+ KWTPL +KY EEW+
Sbjct: 165 IAVLHHLSTDARRRKAIEELIRVVRKGGLVLITVWAVEQEDKSLLNKWTPLCEKYNEEWV 224
Query: 246 GPGSPRVRSPSARTLESIPET-EDNGSEEQGKEPKQSVPDKLWESISLTSQSEDDSVISQ 304
P SP VR+ S LESI ET ED G+ +Q + + D L ++ +T +S I +
Sbjct: 225 DPSSPPVRNQSNTVLESISETDEDTGAVKQRNDDLKISNDGLDDNADVTCS---NSNIDE 281
Query: 305 DVKIITNQQEYFVPWHLPYHRAEVSGASACALANGLAKKDDKKGAVVYNRYYHVFCDGEL 364
K QQEYFVPWHLP+HRAE+ GASA AL NG AK+DDKKG VVYNRYYHVF +GEL
Sbjct: 282 YHK---TQQEYFVPWHLPFHRAEIGGASAAALENGFAKRDDKKGTVVYNRYYHVFVEGEL 338
Query: 365 ERLASDIDNAVVVDRFFDKSNWCIVLQR 392
+RL + I+NAVVVD+F+DKSNWCIVL++
Sbjct: 339 QRLVAGINNAVVVDQFYDKSNWCIVLEK 366
|
Source: Oryza sativa Japonica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|222623679|gb|EEE57811.1| hypothetical protein OsJ_08398 [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
|---|
Score = 458 bits (1178), Expect = e-126, Method: Compositional matrix adjust.
Identities = 226/328 (68%), Positives = 265/328 (80%), Gaps = 9/328 (2%)
Query: 66 SVSTGEDQRCSSSSIKSTPELEKKYVHRVYDAIAPHFSSTRFAKWPKVATFLNSLPSGSL 125
+VST + CSS ++STP++EKKYVHRVYDAIAPHFSSTRFAKWPKVA FLNSL GS+
Sbjct: 7 TVSTEGNNSCSS--VQSTPDIEKKYVHRVYDAIAPHFSSTRFAKWPKVAGFLNSLRPGSV 64
Query: 126 VLDAGCGNGKYLGLNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAIS 185
+LDAGCGNGKYLG NPDC F+GCDISP LI IC RGHEVLVADAVNLPYR +FGDAAIS
Sbjct: 65 ILDAGCGNGKYLGFNPDCLFIGCDISPPLIDICAGRGHEVLVADAVNLPYRDNFGDAAIS 124
Query: 186 IAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWI 245
IAVLHHLST++RR+KAIEEL+RVV+KG LVLITVWAVEQEDKSL+ KWTPL +KY EEW+
Sbjct: 125 IAVLHHLSTDARRRKAIEELIRVVRKGGLVLITVWAVEQEDKSLLNKWTPLCEKYNEEWV 184
Query: 246 GPGSPRVRSPSARTLESIPET-EDNGSEEQGKEPKQSVPDKLWESISLTSQSEDDSVISQ 304
P SP VR+ S LESI ET ED G+ +Q + + D L ++ +T +S I +
Sbjct: 185 DPSSPPVRNQSNTVLESISETDEDTGAVKQRNDDLKISNDGLDDNADVTCS---NSNIDE 241
Query: 305 DVKIITNQQEYFVPWHLPYHRAEVSGASACALANGLAKKDDKKGAVVYNRYYHVFCDGEL 364
K QQEYFVPWHLP+HRAE+ GASA AL NG AK+DDKKG VVYNRYYHVF +GEL
Sbjct: 242 YHK---TQQEYFVPWHLPFHRAEIGGASAAALENGFAKRDDKKGTVVYNRYYHVFVEGEL 298
Query: 365 ERLASDIDNAVVVDRFFDKSNWCIVLQR 392
+RL + I+NAVVVD+F+DKSNWCIVL++
Sbjct: 299 QRLVAGINNAVVVDQFYDKSNWCIVLEK 326
|
Source: Oryza sativa Japonica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 394 | ||||||
| TAIR|locus:2035947 | 404 | AT1G36310 [Arabidopsis thalian | 0.703 | 0.685 | 0.644 | 3.6e-89 | |
| MGI|MGI:1914917 | 664 | Alkbh8 "alkB, alkylation repai | 0.751 | 0.445 | 0.402 | 6.8e-56 | |
| RGD|1304687 | 629 | Alkbh8 "alkB, alkylation repai | 0.746 | 0.467 | 0.398 | 6.1e-55 | |
| UNIPROTKB|F1P0F6 | 673 | ALKBH8 "Uncharacterized protei | 0.753 | 0.441 | 0.391 | 3.4e-54 | |
| UNIPROTKB|I3LA93 | 665 | ALKBH8 "Uncharacterized protei | 0.753 | 0.446 | 0.387 | 3.8e-53 | |
| UNIPROTKB|A1A4L5 | 664 | ALKBH8 "Alkylated DNA repair p | 0.758 | 0.450 | 0.373 | 5.6e-52 | |
| UNIPROTKB|E2REE7 | 674 | ALKBH8 "Uncharacterized protei | 0.741 | 0.433 | 0.384 | 1.7e-50 | |
| UNIPROTKB|Q96BT7 | 664 | ALKBH8 "Alkylated DNA repair p | 0.738 | 0.438 | 0.379 | 4.6e-50 | |
| UNIPROTKB|Q95K79 | 664 | ALKBH8 "Alkylated DNA repair p | 0.753 | 0.447 | 0.377 | 7.4e-50 | |
| ZFIN|ZDB-GENE-030131-4851 | 412 | zgc:73340 "zgc:73340" [Danio r | 0.393 | 0.376 | 0.437 | 2e-45 |
| TAIR|locus:2035947 AT1G36310 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 890 (318.4 bits), Expect = 3.6e-89, P = 3.6e-89
Identities = 185/287 (64%), Positives = 217/287 (75%)
Query: 34 FHPGISGTMREVKVKGAS-DFCTLGADGESSIHSVSTGEDQRCSSSSIKSTPELEKKYVH 92
F+ + MR++KVK S +F T +D E SVS S SS+KSTPE+EKKYVH
Sbjct: 21 FYSISTSIMRDIKVKSDSKEFLT-SSDEEEE--SVSIRVSSSSSLSSVKSTPEIEKKYVH 77
Query: 93 RVYDAIAPHFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGKYLGLNPDCFFVGCDISP 152
RVYDAIAPHFSSTRFAKWPKVA FL SLPSGS++LDAGCGNGKYLGLNP CFF+GCDIS
Sbjct: 78 RVYDAIAPHFSSTRFAKWPKVAAFLESLPSGSVILDAGCGNGKYLGLNPSCFFIGCDISH 137
Query: 153 SLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKG 212
LIKIC D+G EVLVADAVNLPYR +FGDAAISIAVLHHLSTE+RRKKAIEELVRVVK G
Sbjct: 138 PLIKICSDKGQEVLVADAVNLPYREEFGDAAISIAVLHHLSTENRRKKAIEELVRVVKPG 197
Query: 213 SLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGPGSP----RVRSPSARTLESIPETED 268
VLITVWA EQED SL+TKWTPL+ KYVEEW+GPGSP RVR+ +LESIPETE
Sbjct: 198 GFVLITVWAAEQEDTSLLTKWTPLSAKYVEEWVGPGSPMNSPRVRNNPFFSLESIPETEV 257
Query: 269 NGSEEQGKEPKQSVP-DKLWESISLTSQSEDDSVISQDVKIITNQQE 314
+ ++EQ E Q + + + ES T + + +S+I + I Q++
Sbjct: 258 S-TKEQKVENSQFIGLESIPESEESTREQKGESIIPETKASIVEQKD 303
|
|
| MGI|MGI:1914917 Alkbh8 "alkB, alkylation repair homolog 8 (E. coli)" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 576 (207.8 bits), Expect = 6.8e-56, P = 6.8e-56
Identities = 130/323 (40%), Positives = 189/323 (58%)
Query: 77 SSSIKSTPELEKKYVHRVYDAIAPHFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGKY 136
+ S K ELE+K+VH+VY+ IA HFSSTR + WP++ FL +LPSGS+V D GCGNGKY
Sbjct: 361 TESSKEALELEQKHVHQVYNEIASHFSSTRHSPWPRIVEFLKALPSGSIVADIGCGNGKY 420
Query: 137 LGLNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTES 196
LG+N D + +GCD S +L+ IC +R + LV DA+ +P RS DA ISIAV+HH +T
Sbjct: 421 LGINKDLYMIGCDRSQNLVDICRERQFQALVCDALAVPVRSGSCDACISIAVIHHFATAE 480
Query: 197 RRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGPGSPRVRSPS 256
RR +A++EL R+++ G LI VWA+EQE K+ +K+ L K + + G + +
Sbjct: 481 RRVEALQELARLLRPGGQALIYVWAMEQEYKNQKSKY--LRGKRISQ----GDKDELNSA 534
Query: 257 ARTLESIPETEDNGSEEQGKEPKQSVPDKLWESISLTSQSEDDS--VISQDVKIITNQ-- 312
T E + G E +P SV S S+T + E S V + ++ I N+
Sbjct: 535 TSTEEFLVNQTPEGVNE---DPALSV-----NSSSITKEEEYKSRKVPNSELPIHINRTC 586
Query: 313 ---QEYFVPWHLPYHRAEVSGASACALANGLAKKDDKKGAVVYNRYYHVFCDGELERLAS 369
Q+ VPWHL + G +G+A D + V++RYYHVFCDGELE
Sbjct: 587 FHSQDVLVPWHLKRN----PGKDKAIEPSGVAGCPDP--SPVFHRYYHVFCDGELEASCQ 640
Query: 370 DIDNAVVVDRFFDKSNWCIVLQR 392
+ + ++ ++D+ NWC+VLQ+
Sbjct: 641 AVGDVSILQSYYDQGNWCVVLQK 663
|
|
| RGD|1304687 Alkbh8 "alkB, alkylation repair homolog 8 (E. coli)" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 567 (204.7 bits), Expect = 6.1e-55, P = 6.1e-55
Identities = 128/321 (39%), Positives = 189/321 (58%)
Query: 79 SIKSTPELEKKYVHRVYDAIAPHFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGKYLG 138
S K ELE+K+VH VYD IA HFSSTR + WP++ FL +LPSGS+V D GCGNGKYLG
Sbjct: 328 SSKEALELEQKHVHHVYDEIASHFSSTRHSPWPRIVEFLKALPSGSIVADIGCGNGKYLG 387
Query: 139 LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRR 198
+N + + +GCD S +L+ IC +R + LV DA+ +P RS DA ISIAV+HH +T RR
Sbjct: 388 INKELYMIGCDRSRNLVDICRERQFQALVCDALAVPVRSGSCDACISIAVIHHFATAERR 447
Query: 199 KKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGPGSPRVRSPSAR 258
+A++E+ R+++ G LI VWA+EQE + +K+ + I G + SA
Sbjct: 448 VEALQEIARLLRSGGQALIYVWAMEQEYRDQKSKYLKGNR------ISQGD-KGELNSAT 500
Query: 259 TLESIPETEDNGSEEQGKEPKQSVPDKLWESISLTSQSEDDS--VISQDVKIITNQ---- 312
++E + + E ++P SV S + T E S V++ ++ I TN+
Sbjct: 501 SMEQL--LVNQMPEGVSEDPGLSV-----HSSNNTKDEECKSRKVLNSELPIHTNRTCFH 553
Query: 313 -QEYFVPWHLPYHRAEVSGASACALANGLAKKDDKKGAVVYNRYYHVFCDGELERLASDI 371
Q+ VPWHL + + G +GLA+ D + V++RYYHVFC+GELE +
Sbjct: 554 SQDVLVPWHL---KGK-PGKDKAVEQSGLARCPDPRP--VFHRYYHVFCNGELEASCQAV 607
Query: 372 DNAVVVDRFFDKSNWCIVLQR 392
+ ++ F+D+ NWC+VLQ+
Sbjct: 608 GDVSILQSFYDQGNWCVVLQK 628
|
|
| UNIPROTKB|F1P0F6 ALKBH8 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 560 (202.2 bits), Expect = 3.4e-54, P = 3.4e-54
Identities = 121/309 (39%), Positives = 175/309 (56%)
Query: 85 ELEKKYVHRVYDAIAPHFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGKYLGLNPDCF 144
ELE++YVH+VY+ IA HFSSTR + WP+V FL SLP GS+V D GCGNGKYLG+N D +
Sbjct: 375 ELEQQYVHKVYEEIATHFSSTRHSPWPRVVEFLRSLPEGSIVADVGCGNGKYLGINRDLY 434
Query: 145 FVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEE 204
VGCD S +L+ IC ++ + V DA+++P RS DA ISIAV+HH ST RR AI E
Sbjct: 435 MVGCDRSKNLVDICGEKDCQAFVCDALSVPIRSGSCDACISIAVIHHFSTAERRLAAIRE 494
Query: 205 LVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGPGSPRVRSPSARTLESIP 264
L R++K G LI VWA+EQE K+ +K Y++E G S S T + +
Sbjct: 495 LARLLKPGGTALIYVWAMEQEYKNQKSK-------YLKEKHGSKDKEEES-STGTSQRLL 546
Query: 265 ETEDNGSEEQGKEPKQSVPDKLWESISLTSQSEDDSVISQDVKIITNQQEYFVPWHLPYH 324
+ + + QG + D + D + + + Q+ VPWHL
Sbjct: 547 DDQKHDRSSQGSACSDRLLDDSEDKGCAAKPVADSRLPVHTNRTSFHSQDMLVPWHL--- 603
Query: 325 RAEVSGASACALANGLAK-KDDKKGAVVYNRYYHVFCDGELERLASDIDNAVVVDRFFDK 383
+ + A LA K+ ++ + V++RYYHVF +GELE +D ++ ++D+
Sbjct: 604 KGGIKKKGAVVDEASLAGCKESQELSPVFHRYYHVFREGELEAACRSLDCVRILKNYYDQ 663
Query: 384 SNWCIVLQR 392
NWC+VL++
Sbjct: 664 GNWCVVLEK 672
|
|
| UNIPROTKB|I3LA93 ALKBH8 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 550 (198.7 bits), Expect = 3.8e-53, P = 3.8e-53
Identities = 122/315 (38%), Positives = 177/315 (56%)
Query: 81 KSTPELEKKYVHRVYDAIAPHFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGKYLGLN 140
K +LE++YVHRVY+ IA HFSSTR WP + FL LPSGSLV D GCGNGKYLG+N
Sbjct: 365 KEASQLEQEYVHRVYEEIAGHFSSTRHTPWPHIVAFLKDLPSGSLVADIGCGNGKYLGIN 424
Query: 141 PDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKK 200
+ +GCD S +L+ IC +R ++ +V DA+++P RS DA +SIAV+HH +T RR
Sbjct: 425 KELHMIGCDHSQNLVDICRERQYQAIVCDALSVPIRSGSCDACLSIAVIHHFATAERRVA 484
Query: 201 AIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGPGSPRVRSPSARTL 260
A++ELVR+++ G LI VWA+EQE K +K+ E I G + + S+ T
Sbjct: 485 ALQELVRLLRPGGKALIYVWAMEQEYKKKKSKYLR------ENRISQG--KKKEISSHT- 535
Query: 261 ESIPETEDNGSEEQGKEPKQ-SVPDKL-WESISLTSQSEDDSVISQDVKIIT-NQQEYFV 317
+ E E G + SVP ++ S+ +S + + + Q+ V
Sbjct: 536 -PVEELLVKHMPEVGNQDAACSVPSNNDFQEGGCNSRKVTNSKLPIHTNRTSFHSQDLLV 594
Query: 318 PWHLPYHRAEVSGASACALANGLAKKDDKKGAVVYNRYYHVFCDGELERLASDIDNAVVV 377
PWHL + + L L D G V++ RYYHVFC+GELE + N ++
Sbjct: 595 PWHLKGNPGKDKAVEP--LCGPLGSHDS--GPVLH-RYYHVFCEGELEAACQTLSNVSIL 649
Query: 378 DRFFDKSNWCIVLQR 392
++D+ NWC++LQ+
Sbjct: 650 QSYYDQGNWCVILQK 664
|
|
| UNIPROTKB|A1A4L5 ALKBH8 "Alkylated DNA repair protein alkB homolog 8" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 539 (194.8 bits), Expect = 5.6e-52, P = 5.6e-52
Identities = 118/316 (37%), Positives = 173/316 (54%)
Query: 79 SIKSTPELEKKYVHRVYDAIAPHFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGKYLG 138
S K +LE+ YVHRVY+ IA HFSSTR WP + FL +LPSGSLV D GCGNGKYLG
Sbjct: 363 SDKEALQLEQDYVHRVYEEIARHFSSTRHTPWPHIVEFLKALPSGSLVADIGCGNGKYLG 422
Query: 139 LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRR 198
+N + + +GCD S +L+ IC +R ++ V DA+ +P RS DA ISIAV+HH +T RR
Sbjct: 423 INNELYMIGCDHSQNLVDICRERQYQAFVCDALAVPIRSGSCDACISIAVIHHFATAERR 482
Query: 199 KKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEE-WIGPGSPRVRSPSA 257
A++ELVR+++ G LI VWA+EQE + KY+ E G S A
Sbjct: 483 VAALQELVRLLRPGGKALIYVWAMEQE-------YNKKKSKYLRENRTSQGMKEEISNDA 535
Query: 258 RTLESIPETEDNGSEEQGKEPKQSVPDKLWESISLTSQSEDDSVISQDVKIIT-NQQEYF 316
E + + N + S+ D ++ S++ +S + + + Q+
Sbjct: 536 SVQELLVKQLPNVGNQDSAHSVSSIND--FQDGGCNSKNVANSKLPIHTNRTSFHSQDLL 593
Query: 317 VPWHLPYHRAEVSGASACALANGLAKKDDKKGAVVYNRYYHVFCDGELERLASDIDNAVV 376
VPWH + + L +D V++RYYHVFC+GELE ++N +
Sbjct: 594 VPWHFKGNPGKDKRVEPFG---PLGSRDP---GPVFHRYYHVFCEGELEAACRTLNNISI 647
Query: 377 VDRFFDKSNWCIVLQR 392
+ ++D+ NWC++LQ+
Sbjct: 648 LQSYYDQGNWCVILQK 663
|
|
| UNIPROTKB|E2REE7 ALKBH8 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 525 (189.9 bits), Expect = 1.7e-50, P = 1.7e-50
Identities = 123/320 (38%), Positives = 171/320 (53%)
Query: 79 SIKSTPELEKKYVHRVYDAIAPHFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGKYLG 138
S + +LE+ YVHRVY+ IA HFSSTR WP+V FL SLP GSLV D GCGNGKYLG
Sbjct: 376 SAREASQLEQDYVHRVYEEIAEHFSSTRHTPWPRVVEFLKSLPCGSLVADVGCGNGKYLG 435
Query: 139 LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRR 198
+N + + +GCD S L+ IC +R + LV DA+ +P S DA ISIAV+HH ST RR
Sbjct: 436 VNKELYMIGCDRSQKLVDICRERCFQALVCDALAVPLCSGSCDACISIAVIHHFSTAERR 495
Query: 199 KKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEE-WIGPGSPRVRSPSA 257
A++ELVR+++ G L+ VWA+EQE + KY+ E I G S
Sbjct: 496 VAALQELVRLLRPGGQALVYVWAMEQE-------YNKKKSKYLRENRISQGKEEGTSSDT 548
Query: 258 RTLESIPETEDNGSEEQGKEPKQSVPDKLWESISLTSQSEDDSVISQDVKIITNQ----- 312
E + E N + SV D L E + +V + + + TN+
Sbjct: 549 AMPELLVEQVPNVGSRDSECCVSSVTD-LPEG-----GHKARTVTNAKLPVHTNRTSFPS 602
Query: 313 QEYFVPWHLPYHRAEVSGASACALANGLAKKDDKKGAVVYNRYYHVFCDGELERLASDID 372
Q+ VPWH H+ G G V ++RYYHVFC+GELE ++
Sbjct: 603 QDLLVPWH---HQGNPGEGKP-----GHPAGAHDPGPV-FHRYYHVFCEGELEATCQTLN 653
Query: 373 NAVVVDRFFDKSNWCIVLQR 392
+ ++ ++D+ NWC++LQ+
Sbjct: 654 SVSILQSYYDQGNWCVILQK 673
|
|
| UNIPROTKB|Q96BT7 ALKBH8 "Alkylated DNA repair protein alkB homolog 8" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 521 (188.5 bits), Expect = 4.6e-50, P = 4.6e-50
Identities = 123/324 (37%), Positives = 176/324 (54%)
Query: 79 SIKSTPELEKKYVHRVYDAIAPHFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGKYLG 138
S K LE++YVH+VY+ IA HFSSTR WP + FL +LPSGS+V D GCGNGKYLG
Sbjct: 363 SDKEASRLEQEYVHQVYEEIAGHFSSTRHTPWPHIVEFLKALPSGSIVADIGCGNGKYLG 422
Query: 139 LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRR 198
+N + + +GCD S +L+ IC +R + V DA+ +P RS DA ISIAV+HH +T RR
Sbjct: 423 INKELYMIGCDRSQNLVDICRERQFQAFVCDALAVPVRSGSCDACISIAVIHHFATAERR 482
Query: 199 KKAIEELVRVVKKGSLVLITVWAVEQE---DKSLVTKWTPLTQKYVEEWIGPGS------ 249
A++E+VR+++ G LI VWA+EQE KS + +Q EE S
Sbjct: 483 VAALQEIVRLLRPGGKALIYVWAMEQEYNKQKSKYLRGNRNSQGKKEEMNSDTSVQRSLV 542
Query: 250 PRVRSPSAR-TLESIPETEDNGSEEQGKEPKQSVPDKLWESISLTSQSEDDSVISQDVKI 308
++R +R + S+P D S+E G +Q KL ++ TS SQDV
Sbjct: 543 EQMRDMGSRDSASSVPRIND--SQEGGCNSRQVSNSKLPVHVNRTS------FYSQDV-- 592
Query: 309 ITNQQEYFVPWHLPYHRAEVSGASACALANGLAKKDDKKGAVVYNRYYHVFCDGELERLA 368
VPWHL + + +D V++RYYHVF +GELE
Sbjct: 593 -------LVPWHL---KGNPDKGKPVEPFGPIGSQDPSP---VFHRYYHVFREGELEGAC 639
Query: 369 SDIDNAVVVDRFFDKSNWCIVLQR 392
+ + ++ ++D+ NWC++LQ+
Sbjct: 640 RTVSDVRILQSYYDQGNWCVILQK 663
|
|
| UNIPROTKB|Q95K79 ALKBH8 "Alkylated DNA repair protein alkB homolog 8" [Macaca fascicularis (taxid:9541)] | Back alignment and assigned GO terms |
|---|
Score = 519 (187.8 bits), Expect = 7.4e-50, P = 7.4e-50
Identities = 120/318 (37%), Positives = 175/318 (55%)
Query: 79 SIKSTPELEKKYVHRVYDAIAPHFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGKYLG 138
S + LE++YVH+VY+ IA HFSSTR WP + FL +LPSGS+V D GCGNGKYLG
Sbjct: 363 SDEEASRLEQEYVHQVYEEIAGHFSSTRHTPWPHIVEFLKALPSGSIVADIGCGNGKYLG 422
Query: 139 LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRR 198
+N + + VGCD S +L+ IC +R + V DA+ +P RS DA ISIAV+HH +T RR
Sbjct: 423 VNKELYMVGCDRSQNLVDICRERQFQAFVCDALAVPVRSGSCDACISIAVIHHFATAERR 482
Query: 199 KKAIEELVRVVKKGSLVLITVWAVEQE---DKSLVTKWTPLTQKYVEEWIGPGSPRVRSP 255
A++E+VR+++ G LI VWA+EQE KS K +Q EE S + RS
Sbjct: 483 VAALQEIVRLLRPGGKALIYVWAMEQEYNKQKSKYLKGNRNSQGKKEEMNSDTSVQ-RS- 540
Query: 256 SARTLESIPETEDNGSEEQGKEPKQSVPDKLWESISLTSQSEDDSVISQDVKIIT-NQQE 314
+E +P D GS + + + D + S+ +S + V + Q+
Sbjct: 541 ---LVEQMP---DMGSRDSASSVPR-INDS--QEGGCNSRQVSNSKLPIHVNRTSFYSQD 591
Query: 315 YFVPWHLPYHRAEVSGASACALANGLAKKDDKKGAVVYNRYYHVFCDGELERLASDIDNA 374
VPWHL + + +D V++RYYHVF +GELE L + +
Sbjct: 592 MLVPWHL---KGNPDKGKPVEPFGPIGSQDPSP---VFHRYYHVFREGELEALCRTVSDV 645
Query: 375 VVVDRFFDKSNWCIVLQR 392
++ ++D+ NWC++LQ+
Sbjct: 646 RILQSYYDQGNWCVILQK 663
|
|
| ZFIN|ZDB-GENE-030131-4851 zgc:73340 "zgc:73340" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 387 (141.3 bits), Expect = 2.0e-45, Sum P(2) = 2.0e-45
Identities = 70/160 (43%), Positives = 106/160 (66%)
Query: 81 KSTPELEKKYVHRVYDAIAPHFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGKYLGLN 140
++ +LE+++VH VY+ IAP+F+ +R+ WPKV FL GS+V D GCGNGKYL +N
Sbjct: 3 EAASQLEREHVHSVYERIAPYFNDSRYKAWPKVKQFLLEQEPGSIVADIGCGNGKYLHIN 62
Query: 141 PDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKK 200
+ F +GCD+ L++ ++GHEV + D + LPYR DA +SIAV+HH+ST+ RR +
Sbjct: 63 EEIFKLGCDVCRPLVESAWNKGHEVQICDGLRLPYRDACFDAVLSIAVIHHMSTKERRIR 122
Query: 201 AIEELVRVVKKGSLVLITVWAVEQ-----EDKSLVTKWTP 235
AI+E+ R ++ G ++I VWA+EQ E + + W P
Sbjct: 123 AIKEMARTLRVGGRIMIYVWAMEQKRRKFEKQDIFVPWNP 162
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|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.1.1 | 0.691 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | gw1.II.1674.1 | hypothetical protein (369 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | gw1.III.1103.1 | hypothetical protein (344 aa) | • | • | 0.597 | ||||||
 | gw1.V.3068.1 | hypothetical protein (353 aa) | • | • | 0.446 | ||||||
 | gw1.II.1559.1 | hypothetical protein (115 aa) | • | • | • | 0.410 | |||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 394 | |||
| pfam08241 | 92 | pfam08241, Methyltransf_11, Methyltransferase doma | 2e-19 | |
| COG2226 | 238 | COG2226, UbiE, Methylase involved in ubiquinone/me | 3e-12 | |
| cd02440 | 107 | cd02440, AdoMet_MTases, S-adenosylmethionine-depen | 3e-10 | |
| pfam08242 | 98 | pfam08242, Methyltransf_12, Methyltransferase doma | 5e-10 | |
| PRK08317 | 241 | PRK08317, PRK08317, hypothetical protein; Provisio | 6e-10 | |
| pfam13847 | 151 | pfam13847, Methyltransf_31, Methyltransferase doma | 8e-10 | |
| COG0500 | 257 | COG0500, SmtA, SAM-dependent methyltransferases [S | 3e-08 | |
| PRK11088 | 272 | PRK11088, rrmA, 23S rRNA methyltransferase A; Prov | 4e-07 | |
| PRK00216 | 239 | PRK00216, ubiE, ubiquinone/menaquinone biosynthesi | 1e-06 | |
| pfam13649 | 97 | pfam13649, Methyltransf_25, Methyltransferase doma | 4e-06 | |
| TIGR01934 | 223 | TIGR01934, MenG_MenH_UbiE, ubiquinone/menaquinone | 4e-05 | |
| PLN02233 | 261 | PLN02233, PLN02233, ubiquinone biosynthesis methyl | 1e-04 | |
| pfam12847 | 104 | pfam12847, Methyltransf_18, Methyltransferase doma | 1e-04 | |
| pfam13489 | 154 | pfam13489, Methyltransf_23, Methyltransferase doma | 2e-04 | |
| TIGR01177 | 329 | TIGR01177, TIGR01177, TIGR01177 family protein | 3e-04 | |
| TIGR02081 | 194 | TIGR02081, metW, methionine biosynthesis protein M | 3e-04 | |
| PRK00121 | 202 | PRK00121, trmB, tRNA (guanine-N(7)-)-methyltransfe | 4e-04 | |
| TIGR00091 | 194 | TIGR00091, TIGR00091, tRNA (guanine-N(7)-)-methylt | 0.001 | |
| pfam07021 | 193 | pfam07021, MetW, Methionine biosynthesis protein M | 0.002 | |
| pfam13659 | 117 | pfam13659, Methyltransf_26, Methyltransferase doma | 0.002 |
| >gnl|CDD|219759 pfam08241, Methyltransf_11, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 82.3 bits (204), Expect = 2e-19
Identities = 31/95 (32%), Positives = 49/95 (51%), Gaps = 7/95 (7%)
Query: 127 LDAGCGNG---KYLGLNPDCFFVGCDISPSLIKICVDR-GHEVLVADAVNLPYRSDFGDA 182
LD GCG G + L G D+SP ++ + R + +V DA +LP+ + D
Sbjct: 1 LDVGCGTGLLAEALARRGGARVTGVDLSPEMLALARKRAPRKFVVGDAEDLPFPDESFDV 60
Query: 183 AISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLI 217
+S VLHHL ++A+ E+ RV+K G ++I
Sbjct: 61 VVSSLVLHHL---PDPERALREIARVLKPGGKLVI 92
|
Members of this family are SAM dependent methyltransferases. Length = 92 |
| >gnl|CDD|225136 COG2226, UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 65.4 bits (160), Expect = 3e-12
Identities = 47/208 (22%), Positives = 78/208 (37%), Gaps = 37/208 (17%)
Query: 88 KKYVHRVYDAIAPHFSST----RFA---KWPKVATFLNSLPSGSLVLDAGCGNG----KY 136
++ V +V+D +A + F W + L + G VLD CG G
Sbjct: 10 QEKVQKVFDKVAKKYDLMNDLMSFGLHRLWRRALISLLGIKPGDKVLDVACGTGDMALLL 69
Query: 137 LGLNPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFGDAAISIAVL 189
VG DIS S++++ ++ E +V DA NLP+ + DA L
Sbjct: 70 AKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPDNSFDAVTISFGL 129
Query: 190 HHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTP------LTQKYVEE 243
++ + KA++E+ RV+K G +L+ + S KYV
Sbjct: 130 RNV---TDIDKALKEMYRVLKPGGRLLVL-------EFSKPDNPVLRKAYILYYFKYVLP 179
Query: 244 WIG---PGSPRVRSPSARTLESIPETED 268
IG A ++ P+ E+
Sbjct: 180 LIGKLVAKDAEAYEYLAESIRRFPDQEE 207
|
Length = 238 |
| >gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Score = 56.7 bits (137), Expect = 3e-10
Identities = 36/109 (33%), Positives = 49/109 (44%), Gaps = 15/109 (13%)
Query: 126 VLDAGCGNGKY---LGLNPDCFFVGCDISPSLIKICVDRGH-------EVLVADAVNLPY 175
VLD GCG G L P G DISP +++ EVL DA LP
Sbjct: 2 VLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPP 61
Query: 176 RSD--FGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAV 222
+D F D IS LHHL + +EE R++K G ++++T+
Sbjct: 62 EADESF-DVIISDPPLHHL--VEDLARFLEEARRLLKPGGVLVLTLVLA 107
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). Length = 107 |
| >gnl|CDD|219760 pfam08242, Methyltransf_12, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 55.8 bits (135), Expect = 5e-10
Identities = 28/98 (28%), Positives = 41/98 (41%), Gaps = 15/98 (15%)
Query: 127 LDAGCGNG----KYLGLNPDCFFVGCDISPSLIKICVDR--GHEVLVADAVNLPYRSDFG 180
LD GCG G L P + G DISP+ ++ +R +L A V L
Sbjct: 1 LDIGCGTGTLLRALLEALPGLEYTGVDISPAALEAAAERLAALGLLDAVRVRLDVLDAID 60
Query: 181 ------DAAISIAVLHHLSTESRRKKAIEELVRVVKKG 212
D ++ VLHHL+ + + L R++K G
Sbjct: 61 LDPGSFDVVVASNVLHHLAD---PRAVLRNLRRLLKPG 95
|
Members of this family are SAM dependent methyltransferases. Length = 98 |
| >gnl|CDD|181382 PRK08317, PRK08317, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 58.8 bits (143), Expect = 6e-10
Identities = 34/106 (32%), Positives = 50/106 (47%), Gaps = 15/106 (14%)
Query: 123 GSLVLDAGCGNG---KYLG--LNPDCFFVGCDISPSLIKICVDR--GHEVLV----ADAV 171
G VLD GCG G + L + P+ VG D S +++ + +R G V DA
Sbjct: 20 GDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDAD 79
Query: 172 NLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVK-KGSLVL 216
LP+ DA S VL HL +A+ E+ RV++ G +V+
Sbjct: 80 GLPFPDGSFDAVRSDRVLQHLED---PARALAEIARVLRPGGRVVV 122
|
Length = 241 |
| >gnl|CDD|222415 pfam13847, Methyltransf_31, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 56.7 bits (137), Expect = 8e-10
Identities = 43/145 (29%), Positives = 62/145 (42%), Gaps = 24/145 (16%)
Query: 122 SGSLVLDAGCGNGKYLG------LNPDCFFVGCDISPSLIKICVDRGH---------EVL 166
SG VLD GCG G YL L P VG DIS I+ + + E +
Sbjct: 3 SGIKVLDLGCGTG-YLTFILAEKLGPGAEVVGIDISEEAIE--KAKENAKKLGYENVEFI 59
Query: 167 VADAVNLP---YRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVE 223
D LP + D IS VL+HL K +EE++RV+K G +++++ +
Sbjct: 60 QGDIEELPQLQLEDNSFDVVISNEVLNHL---PDPDKVLEEIIRVLKPGGVLIVSDPVLL 116
Query: 224 QEDKSLVTKWTPLTQKYVEEWIGPG 248
E +L+ L +E IG
Sbjct: 117 SELPALLEDLERLYAGVLEGAIGKK 141
|
This family appears to be have methyltransferase activity. Length = 151 |
| >gnl|CDD|223574 COG0500, SmtA, SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Score = 54.1 bits (127), Expect = 3e-08
Identities = 38/123 (30%), Positives = 56/123 (45%), Gaps = 18/123 (14%)
Query: 113 VATFLNSLPSGSLVLDAGCGNGKYLGL----NPDCFFVGCDISPSLIKICVDRGH----- 163
V L LP G VLD GCG G+ L + VG D+SP ++ + R
Sbjct: 39 VLRLLRLLPGGLGVLDIGCGTGRLALLARLGGRGAYVVGVDLSPEMLALARARAEGAGLG 98
Query: 164 --EVLVADAVNLPYRSDFG---DAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLIT 218
+ +VADA+ + D IS+ VLH L KA+ EL+RV+K G ++++
Sbjct: 99 LVDFVVADALGGVLPFEDSASFDLVISLLVLHLL----PPAKALRELLRVLKPGGRLVLS 154
Query: 219 VWA 221
Sbjct: 155 DLL 157
|
Length = 257 |
| >gnl|CDD|236841 PRK11088, rrmA, 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Score = 50.7 bits (122), Expect = 4e-07
Identities = 37/103 (35%), Positives = 43/103 (41%), Gaps = 20/103 (19%)
Query: 126 VLDAGCGNGKY-------LGLNPDCFFVGCDISPSLIKICVDRGHEV--LVADAVNLPYR 176
+LD GCG G Y L G DIS IK R +V VA + LP+
Sbjct: 89 LLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCVASSHRLPFA 148
Query: 177 SDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219
DA I I KA EEL RVVK G ++ITV
Sbjct: 149 DQSLDAIIRIYA---------PCKA-EELARVVKPGG-IVITV 180
|
Length = 272 |
| >gnl|CDD|234689 PRK00216, ubiE, ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Score = 48.6 bits (117), Expect = 1e-06
Identities = 38/155 (24%), Positives = 59/155 (38%), Gaps = 39/155 (25%)
Query: 91 VHRVYDAIAPHFSST---------RFAKWPKVA-TFLNSLPSGSLVLDAGCGNGKYLGL- 139
V ++D+IAP + R W + +L P G VLD CG G
Sbjct: 13 VAEMFDSIAPKYDLMNDLLSFGLHR--VWRRKTIKWLGVRP-GDKVLDLACGTGDLAIAL 69
Query: 140 ----NPDCFFVGCDISPSLIKICVDRGH--------EVLVADAVNLPYRSDFGDAAISIA 187
VG D S ++ + ++ E + DA LP+ + DA ++IA
Sbjct: 70 AKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDNSFDA-VTIA 128
Query: 188 -----VLHHLSTESRRKKAIEELVRVVKKGSLVLI 217
V KA+ E+ RV+K G ++I
Sbjct: 129 FGLRNVPD-------IDKALREMYRVLKPGGRLVI 156
|
Length = 239 |
| >gnl|CDD|222287 pfam13649, Methyltransf_25, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 4e-06
Identities = 27/97 (27%), Positives = 43/97 (44%), Gaps = 11/97 (11%)
Query: 126 VLDAGCGNGKYLGLNPDCF---FVGCDISPSLIKICVDRG------HEVLVADAVNLPYR 176
+LD GCG G+ L G DIS +++ +R +VADA +LP+
Sbjct: 1 ILDLGCGTGRVLRALARAGPSSVTGVDISKEALELAKERLRDKGPKVRFVVADARDLPFE 60
Query: 177 SDFGDAAI-SIAVLHHLSTESRRKKAIEELVRVVKKG 212
D I + L +LS + R + E R+++ G
Sbjct: 61 EGSFDLVICAGLSLDYLSPKQLR-ALLREAARLLRPG 96
|
This family appears to be a methyltransferase domain. Length = 97 |
| >gnl|CDD|233645 TIGR01934, MenG_MenH_UbiE, ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 4e-05
Identities = 39/146 (26%), Positives = 60/146 (41%), Gaps = 24/146 (16%)
Query: 91 VHRVYDAIAPH-------FSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNG-------KY 136
V ++D IAP S W + A L + G VLD CG G K
Sbjct: 1 VQEMFDRIAPKYDLLNDLLSFGLHRLWRRRAVKLIGVFKGQKVLDVACGTGDLAIELAKS 60
Query: 137 LGLNPDCFFVGCDISPSLIKICVDRGH-----EVLVADAVNLPYRSDFGDAAISIAVLHH 191
G D S ++++ + E + ADA LP+ + DA ++IA
Sbjct: 61 APDRGKV--TGVDFSSEMLEVAKKKSELPLNIEFIQADAEALPFEDNSFDA-VTIA--FG 115
Query: 192 LSTESRRKKAIEELVRVVKKGSLVLI 217
L + +KA+ E+ RV+K G ++I
Sbjct: 116 LRNVTDIQKALREMYRVLKPGGRLVI 141
|
This model represents a family of methyltransferases involved in the biosynthesis of menaquinone and ubiqinone. Some members such as the UbiE enzyme from E. coli are believed to act in both pathways, while others may act in only the menaquinone pathway. These methyltransferases are members of the UbiE/CoQ family of methyltransferases (pfam01209) which also contains ubiquinone methyltransferases and other methyltransferases. Members of this clade include a wide distribution of bacteria and eukaryotes, but no archaea. An outgroup for this clade is provided by the phosphatidylethanolamine methyltransferase (EC 2.1.1.17) from Rhodobacter sphaeroides. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 223 |
| >gnl|CDD|177877 PLN02233, PLN02233, ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Score = 43.0 bits (101), Expect = 1e-04
Identities = 39/140 (27%), Positives = 59/140 (42%), Gaps = 20/140 (14%)
Query: 94 VYDAIAPHFSSTRFAKWPKVATFLNSLPSGSLVLDAGCG--------------NGKYLGL 139
VYD + S + W ++A + G VLD CG +GK +GL
Sbjct: 45 VYDNLNDLLSLGQHRIWKRMAVSWSGAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGL 104
Query: 140 N--PDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESR 197
+ + V K C + E + DA +LP+ + DA I + + L
Sbjct: 105 DFSSEQLAVAASRQELKAKSCY-KNIEWIEGDATDLPFDDCYFDA---ITMGYGLRNVVD 160
Query: 198 RKKAIEELVRVVKKGSLVLI 217
R KA++E+ RV+K GS V I
Sbjct: 161 RLKAMQEMYRVLKPGSRVSI 180
|
Length = 261 |
| >gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 1e-04
Identities = 22/108 (20%), Positives = 40/108 (37%), Gaps = 17/108 (15%)
Query: 122 SGSLVLDAGCGNGKYL----GLNPDCFFVGCDISPSLIKIC-------VDRGHEVLVADA 170
G+ VLD GCG G L P G D+SP ++++ + + DA
Sbjct: 1 PGARVLDIGCGTGSLAIELARLFPGARVTGVDLSPEMLELARENAKLALGPRITFVQGDA 60
Query: 171 VNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLIT 218
+ + DA L + ++ L ++K G +++
Sbjct: 61 PDALDLLEGFDAVFIGGGGGDL------LELLDALASLLKPGGRLVLN 102
|
Protein in this family function as methyltransferases. Length = 104 |
| >gnl|CDD|222171 pfam13489, Methyltransf_23, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 2e-04
Identities = 31/119 (26%), Positives = 50/119 (42%), Gaps = 12/119 (10%)
Query: 113 VATFLNSLPSGSLVLDAGCGNGKYLGLNPDCFF--VGCDISPSLIKICVDRGHEVLVADA 170
+A L L G VLD GCG G L L + F G D SP+ + I + DA
Sbjct: 13 LARLLPRLKPGGRVLDIGCGTGILLRLLRERGFDVTGVDPSPAAVLI-------FSLFDA 65
Query: 171 VNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSL 229
+ + D + VL HL +++L ++K G ++LI+ + + +
Sbjct: 66 PDPAVLAGKYDLITAFEVLEHLPD---PPALLQQLRELLKPGGVLLISTPLADDDARLF 121
|
This family appears to be a methyltransferase domain. Length = 154 |
| >gnl|CDD|233303 TIGR01177, TIGR01177, TIGR01177 family protein | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 3e-04
Identities = 30/125 (24%), Positives = 42/125 (33%), Gaps = 28/125 (22%)
Query: 111 PKVATFLNSLP---SGSLVLDAGCGNGKYL------GLNPDCFFVGCDISPSLIKIC--- 158
PK+A + +L G VLD CG G +L G +GCDI ++
Sbjct: 168 PKLARAMVNLARVTEGDRVLDPFCGTGGFLIEAGLMGAKV----IGCDIDWKMVAGARIN 223
Query: 159 ----VDRGHEVLVADAVNLPYRSDFGDAA-------ISIAVLHHLSTESRRKKAIEELVR 207
V DA LP S+ DA S +++EE
Sbjct: 224 LEHYGIEDFFVKRGDATKLPLSSESVDAIATDPPYGRSTTAAGDGLESLYE-RSLEEFHE 282
Query: 208 VVKKG 212
V+K
Sbjct: 283 VLKSE 287
|
This family is found exclusively in the Archaea [Hypothetical proteins, Conserved]. Length = 329 |
| >gnl|CDD|233713 TIGR02081, metW, methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 3e-04
Identities = 31/107 (28%), Positives = 48/107 (44%), Gaps = 8/107 (7%)
Query: 111 PKVATFLNSLPSGSLVLDAGCGNGKYLGLNPD---CFFVGCDISPSLIKICVDRGHEVLV 167
+ + LN +P GS VLD GCG+G+ L L D G +I + CV RG V+
Sbjct: 2 VDLESILNLIPPGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVARGVNVIQ 61
Query: 168 ADA-VNLPYRSDFGDAAISIAVLHH-LSTESRRKKAIEELVRVVKKG 212
D L F D + +L L ++ ++E++RV +
Sbjct: 62 GDLDEGLEA---FPDKSFDYVILSQTLQATRNPEEILDEMLRVGRHA 105
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized [Amino acid biosynthesis, Aspartate family]. Length = 194 |
| >gnl|CDD|234649 PRK00121, trmB, tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Score = 40.9 bits (97), Expect = 4e-04
Identities = 23/104 (22%), Positives = 38/104 (36%), Gaps = 21/104 (20%)
Query: 88 KKYVHR-------VYDAIAPHFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGKYL--- 137
+ +V R AI + A F N P + L+ G G G++L
Sbjct: 2 RSFVRRRGRLTKGQQRAIEELWPRLSPAPLDWAELFGNDAP---IHLEIGFGKGEFLVEM 58
Query: 138 -GLNPDCFFVGCDISPSLIKICVDRGHE-------VLVADAVNL 173
NPD F+G ++ + + + E +L DAV +
Sbjct: 59 AKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEV 102
|
Length = 202 |
| >gnl|CDD|161703 TIGR00091, TIGR00091, tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Score = 39.3 bits (92), Expect = 0.001
Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 13/75 (17%)
Query: 111 PKVATFLNSLPSGSLVLDAGCGNGKYL-GL---NPDCFFVGCDISPSLIKICVDRGHE-- 164
P AT + L L+ GCG G++L + NPD F+G +I ++ ++ ++
Sbjct: 7 PDFATVFGN--KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLG 64
Query: 165 -----VLVADAVNLP 174
VL DA L
Sbjct: 65 LKNLHVLCGDANELL 79
|
This predicted S-adenosylmethionine-dependent methyltransferase is found in a single copy in most Bacteria. It is also found, with a short amino-terminal extension in eukaryotes. Its function is unknown. In E. coli, this protein flanks the DNA repair protein MutY, also called micA [Protein synthesis, tRNA and rRNA base modification]. Length = 194 |
| >gnl|CDD|219269 pfam07021, MetW, Methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Score = 38.9 bits (91), Expect = 0.002
Identities = 27/103 (26%), Positives = 47/103 (45%), Gaps = 14/103 (13%)
Query: 117 LNSLPSGSLVLDAGCGNGKYLGLNPDCFFV---GCDISPSLIKICVDRGHEVLVADA--- 170
+P GS VLD GCG+G L L + V G ++ + + CV +G V+ DA
Sbjct: 8 ARLIPPGSRVLDLGCGDGSLLYLLQEEKQVDGRGIELDAAGVAECVAKGLSVIQGDADKG 67
Query: 171 -VNLPYRSDFGDAAISIAVLHHLSTESRRKKAI-EELVRVVKK 211
+ P D + +L +R + + +EL+R+ ++
Sbjct: 68 LEHFP------DKSFDYVILSQTLQATRNPREVLDELLRIGRR 104
|
This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalyzed by the products of the metXW genes and is equivalent to the first step in enterobacteria, gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalyzed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In Pseudomonas putida, as in gram-positive bacteria and certain fungi, the second and third steps are a direct sulfhydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells. Length = 193 |
| >gnl|CDD|222295 pfam13659, Methyltransf_26, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 37.4 bits (87), Expect = 0.002
Identities = 27/115 (23%), Positives = 41/115 (35%), Gaps = 19/115 (16%)
Query: 123 GSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKIC--------VDRGHEVLVADA 170
G VLD G G+G +L PD VG ++ P + + V+V DA
Sbjct: 1 GDRVLDPGAGSGAFLLAAARAGPDARVVGVELDPEAAALARRRLALAGLAPRVRVVVGDA 60
Query: 171 VNLPYRSD------FGDAAISIAVLHHLSTESRRKKAIEELVRVVK-KGSLVLIT 218
L D G+ + + +R++K G LV+IT
Sbjct: 61 RELLELPDGSFDLVLGNPPYGPRAGDPKDNRDLYDRFLAAALRLLKPGGVLVVIT 115
|
This family contains methyltransferase domains. Length = 117 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 394 | |||
| KOG1331 | 293 | consensus Predicted methyltransferase [General fun | 100.0 | |
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 99.9 | |
| PF01209 | 233 | Ubie_methyltran: ubiE/COQ5 methyltransferase famil | 99.87 | |
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 99.85 | |
| KOG1540 | 296 | consensus Ubiquinone biosynthesis methyltransferas | 99.85 | |
| PLN02396 | 322 | hexaprenyldihydroxybenzoate methyltransferase | 99.73 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 99.73 | |
| PF13489 | 161 | Methyltransf_23: Methyltransferase domain; PDB: 3J | 99.73 | |
| PF08241 | 95 | Methyltransf_11: Methyltransferase domain; InterPr | 99.72 | |
| PRK05785 | 226 | hypothetical protein; Provisional | 99.72 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 99.71 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 99.7 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 99.69 | |
| PLN02244 | 340 | tocopherol O-methyltransferase | 99.69 | |
| PF07021 | 193 | MetW: Methionine biosynthesis protein MetW; InterP | 99.64 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 99.63 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 99.62 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 99.61 | |
| PRK15451 | 247 | tRNA cmo(5)U34 methyltransferase; Provisional | 99.61 | |
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 99.6 | |
| KOG4300 | 252 | consensus Predicted methyltransferase [General fun | 99.6 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 99.59 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 99.58 | |
| TIGR00740 | 239 | methyltransferase, putative. A simple BLAST search | 99.57 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 99.56 | |
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 99.56 | |
| TIGR03587 | 204 | Pse_Me-ase pseudaminic acid biosynthesis-associate | 99.56 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 99.56 | |
| TIGR02072 | 240 | BioC biotin biosynthesis protein BioC. This enzyme | 99.55 | |
| PF13649 | 101 | Methyltransf_25: Methyltransferase domain; PDB: 3B | 99.54 | |
| PRK15068 | 322 | tRNA mo(5)U34 methyltransferase; Provisional | 99.54 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 99.54 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.53 | |
| PRK12335 | 287 | tellurite resistance protein TehB; Provisional | 99.53 | |
| PRK06202 | 232 | hypothetical protein; Provisional | 99.53 | |
| PF08242 | 99 | Methyltransf_12: Methyltransferase domain; InterPr | 99.53 | |
| KOG1270 | 282 | consensus Methyltransferases [Coenzyme transport a | 99.51 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 99.51 | |
| TIGR00452 | 314 | methyltransferase, putative. Known examples to dat | 99.5 | |
| TIGR01934 | 223 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis | 99.49 | |
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Meth | 99.49 | |
| COG4106 | 257 | Tam Trans-aconitate methyltransferase [General fun | 99.47 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 99.47 | |
| PRK06922 | 677 | hypothetical protein; Provisional | 99.47 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 99.46 | |
| TIGR03438 | 301 | probable methyltransferase. This model represents | 99.45 | |
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (P | 99.45 | |
| PF03848 | 192 | TehB: Tellurite resistance protein TehB; InterPro: | 99.44 | |
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 99.44 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 99.44 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 99.44 | |
| KOG1541 | 270 | consensus Predicted protein carboxyl methylase [Ge | 99.44 | |
| TIGR01983 | 224 | UbiG ubiquinone biosynthesis O-methyltransferase. | 99.43 | |
| TIGR02081 | 194 | metW methionine biosynthesis protein MetW. This pr | 99.42 | |
| TIGR02021 | 219 | BchM-ChlM magnesium protoporphyrin O-methyltransfe | 99.42 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 99.41 | |
| KOG2361 | 264 | consensus Predicted methyltransferase [General fun | 99.41 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 99.41 | |
| PF05401 | 201 | NodS: Nodulation protein S (NodS); InterPro: IPR00 | 99.4 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 99.38 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.35 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 99.34 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 99.34 | |
| PF08003 | 315 | Methyltransf_9: Protein of unknown function (DUF16 | 99.32 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 99.32 | |
| PRK13256 | 226 | thiopurine S-methyltransferase; Reviewed | 99.32 | |
| PLN02232 | 160 | ubiquinone biosynthesis methyltransferase | 99.31 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 99.31 | |
| KOG3010 | 261 | consensus Methyltransferase [General function pred | 99.3 | |
| PLN02585 | 315 | magnesium protoporphyrin IX methyltransferase | 99.28 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 99.28 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 99.26 | |
| PRK07580 | 230 | Mg-protoporphyrin IX methyl transferase; Validated | 99.26 | |
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU. Membe | 99.25 | |
| TIGR00091 | 194 | tRNA (guanine-N(7)-)-methyltransferase. In E. coli | 99.24 | |
| PRK05134 | 233 | bifunctional 3-demethylubiquinone-9 3-methyltransf | 99.24 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 99.24 | |
| PRK04266 | 226 | fibrillarin; Provisional | 99.23 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 99.22 | |
| PF05724 | 218 | TPMT: Thiopurine S-methyltransferase (TPMT); Inter | 99.21 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 99.19 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 99.18 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 99.17 | |
| PF03291 | 331 | Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 | 99.15 | |
| KOG1975 | 389 | consensus mRNA cap methyltransferase [RNA processi | 99.15 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 99.14 | |
| PF13659 | 117 | Methyltransf_26: Methyltransferase domain; PDB: 3G | 99.14 | |
| TIGR01177 | 329 | conserved hypothetical protein TIGR01177. This fam | 99.13 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 99.12 | |
| PRK14121 | 390 | tRNA (guanine-N(7)-)-methyltransferase; Provisiona | 99.12 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 99.11 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 99.11 | |
| PHA03411 | 279 | putative methyltransferase; Provisional | 99.11 | |
| PF05175 | 170 | MTS: Methyltransferase small domain; InterPro: IPR | 99.09 | |
| KOG1271 | 227 | consensus Methyltransferases [General function pre | 99.07 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 99.06 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 99.04 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 99.03 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methy | 99.01 | |
| PRK00312 | 212 | pcm protein-L-isoaspartate O-methyltransferase; Re | 99.01 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 99.01 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 99.0 | |
| PTZ00146 | 293 | fibrillarin; Provisional | 98.99 | |
| PF01135 | 209 | PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl | 98.97 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransfe | 98.93 | |
| PRK14904 | 445 | 16S rRNA methyltransferase B; Provisional | 98.92 | |
| TIGR00536 | 284 | hemK_fam HemK family putative methylases. The gene | 98.92 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 98.92 | |
| PRK10901 | 427 | 16S rRNA methyltransferase B; Provisional | 98.91 | |
| PRK14903 | 431 | 16S rRNA methyltransferase B; Provisional | 98.91 | |
| PRK14901 | 434 | 16S rRNA methyltransferase B; Provisional | 98.91 | |
| PRK14966 | 423 | unknown domain/N5-glutamine S-adenosyl-L-methionin | 98.9 | |
| PF06080 | 204 | DUF938: Protein of unknown function (DUF938); Inte | 98.9 | |
| PF00891 | 241 | Methyltransf_2: O-methyltransferase; InterPro: IPR | 98.9 | |
| TIGR00563 | 426 | rsmB ribosomal RNA small subunit methyltransferase | 98.89 | |
| PRK13943 | 322 | protein-L-isoaspartate O-methyltransferase; Provis | 98.88 | |
| PF05148 | 219 | Methyltransf_8: Hypothetical methyltransferase; In | 98.88 | |
| TIGR00446 | 264 | nop2p NOL1/NOP2/sun family putative RNA methylase. | 98.88 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 98.88 | |
| TIGR03704 | 251 | PrmC_rel_meth putative protein-(glutamine-N5) meth | 98.87 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 98.86 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, | 98.86 | |
| PHA03412 | 241 | putative methyltransferase; Provisional | 98.84 | |
| PRK09328 | 275 | N5-glutamine S-adenosyl-L-methionine-dependent met | 98.84 | |
| COG2518 | 209 | Pcm Protein-L-isoaspartate carboxylmethyltransfera | 98.82 | |
| COG2813 | 300 | RsmC 16S RNA G1207 methylase RsmC [Translation, ri | 98.82 | |
| PRK10611 | 287 | chemotaxis methyltransferase CheR; Provisional | 98.81 | |
| COG4123 | 248 | Predicted O-methyltransferase [General function pr | 98.8 | |
| PF01739 | 196 | CheR: CheR methyltransferase, SAM binding domain; | 98.78 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 98.78 | |
| KOG3045 | 325 | consensus Predicted RNA methylase involved in rRNA | 98.77 | |
| PF05219 | 265 | DREV: DREV methyltransferase; InterPro: IPR007884 | 98.77 | |
| PRK14902 | 444 | 16S rRNA methyltransferase B; Provisional | 98.74 | |
| smart00650 | 169 | rADc Ribosomal RNA adenine dimethylases. | 98.72 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 98.69 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 98.68 | |
| PF02390 | 195 | Methyltransf_4: Putative methyltransferase ; Inter | 98.68 | |
| TIGR03439 | 319 | methyl_EasF probable methyltransferase domain, Eas | 98.66 | |
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 98.64 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 98.62 | |
| COG2519 | 256 | GCD14 tRNA(1-methyladenosine) methyltransferase an | 98.6 | |
| KOG2940 | 325 | consensus Predicted methyltransferase [General fun | 98.55 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 98.55 | |
| PRK15128 | 396 | 23S rRNA m(5)C1962 methyltransferase; Provisional | 98.54 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 98.52 | |
| COG1041 | 347 | Predicted DNA modification methylase [DNA replicat | 98.51 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 98.49 | |
| PF05891 | 218 | Methyltransf_PK: AdoMet dependent proline di-methy | 98.49 | |
| PF08704 | 247 | GCD14: tRNA methyltransferase complex GCD14 subuni | 98.49 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 98.47 | |
| PLN02366 | 308 | spermidine synthase | 98.44 | |
| KOG1269 | 364 | consensus SAM-dependent methyltransferases [Lipid | 98.44 | |
| KOG1661 | 237 | consensus Protein-L-isoaspartate(D-aspartate) O-me | 98.43 | |
| COG0500 | 257 | SmtA SAM-dependent methyltransferases [Secondary m | 98.41 | |
| COG1352 | 268 | CheR Methylase of chemotaxis methyl-accepting prot | 98.41 | |
| KOG2899 | 288 | consensus Predicted methyltransferase [General fun | 98.39 | |
| KOG1499 | 346 | consensus Protein arginine N-methyltransferase PRM | 98.37 | |
| COG0220 | 227 | Predicted S-adenosylmethionine-dependent methyltra | 98.37 | |
| PRK03522 | 315 | rumB 23S rRNA methyluridine methyltransferase; Rev | 98.33 | |
| PRK13168 | 443 | rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe | 98.32 | |
| COG2890 | 280 | HemK Methylase of polypeptide chain release factor | 98.3 | |
| PF11968 | 219 | DUF3321: Putative methyltransferase (DUF3321); Int | 98.3 | |
| PLN02476 | 278 | O-methyltransferase | 98.29 | |
| PRK10909 | 199 | rsmD 16S rRNA m(2)G966-methyltransferase; Provisio | 98.28 | |
| COG4122 | 219 | Predicted O-methyltransferase [General function pr | 98.28 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 98.26 | |
| COG3963 | 194 | Phospholipid N-methyltransferase [Lipid metabolism | 98.25 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 98.22 | |
| COG2521 | 287 | Predicted archaeal methyltransferase [General func | 98.21 | |
| COG2263 | 198 | Predicted RNA methylase [Translation, ribosomal st | 98.21 | |
| PF01596 | 205 | Methyltransf_3: O-methyltransferase; InterPro: IPR | 98.2 | |
| TIGR00478 | 228 | tly hemolysin TlyA family protein. Hemolysins are | 98.14 | |
| PRK14896 | 258 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.14 | |
| PRK00274 | 272 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.13 | |
| PF12147 | 311 | Methyltransf_20: Putative methyltransferase; Inter | 98.1 | |
| PF01234 | 256 | NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I | 98.09 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 98.09 | |
| TIGR00479 | 431 | rumA 23S rRNA (uracil-5-)-methyltransferase RumA. | 98.08 | |
| PF05185 | 448 | PRMT5: PRMT5 arginine-N-methyltransferase; InterPr | 98.08 | |
| PF01170 | 179 | UPF0020: Putative RNA methylase family UPF0020; In | 98.06 | |
| PF10294 | 173 | Methyltransf_16: Putative methyltransferase; Inter | 98.05 | |
| TIGR02085 | 374 | meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer | 98.03 | |
| PLN02823 | 336 | spermine synthase | 98.02 | |
| KOG3420 | 185 | consensus Predicted RNA methylase [Translation, ri | 98.02 | |
| PLN02589 | 247 | caffeoyl-CoA O-methyltransferase | 97.98 | |
| PF02527 | 184 | GidB: rRNA small subunit methyltransferase G; Inte | 97.97 | |
| KOG2904 | 328 | consensus Predicted methyltransferase [General fun | 97.95 | |
| COG0293 | 205 | FtsJ 23S rRNA methylase [Translation, ribosomal st | 97.94 | |
| KOG2352 | 482 | consensus Predicted spermine/spermidine synthase [ | 97.94 | |
| TIGR00755 | 253 | ksgA dimethyladenosine transferase. Alternate name | 97.93 | |
| PF07942 | 270 | N2227: N2227-like protein; InterPro: IPR012901 Thi | 97.93 | |
| PTZ00338 | 294 | dimethyladenosine transferase-like protein; Provis | 97.89 | |
| PRK11933 | 470 | yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; | 97.88 | |
| COG1092 | 393 | Predicted SAM-dependent methyltransferases [Genera | 97.8 | |
| KOG3178 | 342 | consensus Hydroxyindole-O-methyltransferase and re | 97.77 | |
| PF01728 | 181 | FtsJ: FtsJ-like methyltransferase; InterPro: IPR00 | 97.77 | |
| PF02384 | 311 | N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T | 97.74 | |
| PF01269 | 229 | Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr | 97.71 | |
| PF02475 | 200 | Met_10: Met-10+ like-protein; InterPro: IPR003402 | 97.7 | |
| KOG4589 | 232 | consensus Cell division protein FtsJ [Cell cycle c | 97.69 | |
| PRK04338 | 382 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 97.67 | |
| PF09243 | 274 | Rsm22: Mitochondrial small ribosomal subunit Rsm22 | 97.66 | |
| PRK11727 | 321 | 23S rRNA mA1618 methyltransferase; Provisional | 97.63 | |
| KOG1500 | 517 | consensus Protein arginine N-methyltransferase CAR | 97.62 | |
| TIGR00095 | 189 | RNA methyltransferase, RsmD family. This model rep | 97.6 | |
| KOG3191 | 209 | consensus Predicted N6-DNA-methyltransferase [Tran | 97.54 | |
| COG0421 | 282 | SpeE Spermidine synthase [Amino acid transport and | 97.53 | |
| PF08123 | 205 | DOT1: Histone methylation protein DOT1 ; InterPro: | 97.52 | |
| COG0144 | 355 | Sun tRNA and rRNA cytosine-C5-methylases [Translat | 97.51 | |
| COG4627 | 185 | Uncharacterized protein conserved in bacteria [Fun | 97.44 | |
| KOG3987 | 288 | consensus Uncharacterized conserved protein DREV/C | 97.42 | |
| PF01564 | 246 | Spermine_synth: Spermine/spermidine synthase; Inte | 97.34 | |
| KOG0820 | 315 | consensus Ribosomal RNA adenine dimethylase [RNA p | 97.34 | |
| PF10672 | 286 | Methyltrans_SAM: S-adenosylmethionine-dependent me | 97.34 | |
| TIGR02143 | 353 | trmA_only tRNA (uracil-5-)-methyltransferase. This | 97.33 | |
| COG0030 | 259 | KsgA Dimethyladenosine transferase (rRNA methylati | 97.25 | |
| COG2520 | 341 | Predicted methyltransferase [General function pred | 97.2 | |
| PRK00536 | 262 | speE spermidine synthase; Provisional | 97.2 | |
| PRK05031 | 362 | tRNA (uracil-5-)-methyltransferase; Validated | 97.17 | |
| COG0357 | 215 | GidB Predicted S-adenosylmethionine-dependent meth | 97.17 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 97.16 | |
| PF04672 | 267 | Methyltransf_19: S-adenosyl methyltransferase; Int | 97.16 | |
| PRK00050 | 296 | 16S rRNA m(4)C1402 methyltranserfase; Provisional | 97.15 | |
| PRK11760 | 357 | putative 23S rRNA C2498 ribose 2'-O-ribose methylt | 97.02 | |
| KOG1596 | 317 | consensus Fibrillarin and related nucleolar RNA-bi | 96.97 | |
| KOG1663 | 237 | consensus O-methyltransferase [Secondary metabolit | 96.97 | |
| TIGR02987 | 524 | met_A_Alw26 type II restriction m6 adenine DNA met | 96.95 | |
| PF03602 | 183 | Cons_hypoth95: Conserved hypothetical protein 95; | 96.87 | |
| COG1889 | 231 | NOP1 Fibrillarin-like rRNA methylase [Translation, | 96.86 | |
| TIGR00308 | 374 | TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi | 96.75 | |
| COG4076 | 252 | Predicted RNA methylase [General function predicti | 96.75 | |
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 96.73 | |
| PF01189 | 283 | Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR | 96.61 | |
| PF13679 | 141 | Methyltransf_32: Methyltransferase domain | 96.6 | |
| KOG2915 | 314 | consensus tRNA(1-methyladenosine) methyltransferas | 96.59 | |
| TIGR00006 | 305 | S-adenosyl-methyltransferase MraW. Genetics paper | 96.44 | |
| KOG1709 | 271 | consensus Guanidinoacetate methyltransferase and r | 96.44 | |
| PF07091 | 251 | FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: | 96.42 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 96.38 | |
| PF06962 | 140 | rRNA_methylase: Putative rRNA methylase; InterPro: | 96.26 | |
| COG0116 | 381 | Predicted N6-adenine-specific DNA methylase [DNA r | 96.21 | |
| COG4798 | 238 | Predicted methyltransferase [General function pred | 96.16 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 96.12 | |
| PF00398 | 262 | RrnaAD: Ribosomal RNA adenine dimethylase; InterPr | 96.09 | |
| KOG2798 | 369 | consensus Putative trehalase [Carbohydrate transpo | 95.94 | |
| COG0742 | 187 | N6-adenine-specific methylase [DNA replication, re | 95.91 | |
| PF04816 | 205 | DUF633: Family of unknown function (DUF633) ; Inte | 95.79 | |
| PF09445 | 163 | Methyltransf_15: RNA cap guanine-N2 methyltransfer | 95.72 | |
| PF13578 | 106 | Methyltransf_24: Methyltransferase domain; PDB: 3S | 95.63 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 95.61 | |
| PF01795 | 310 | Methyltransf_5: MraW methylase family; InterPro: I | 95.45 | |
| COG5459 | 484 | Predicted rRNA methylase [Translation, ribosomal s | 95.42 | |
| COG1189 | 245 | Predicted rRNA methylase [Translation, ribosomal s | 95.33 | |
| KOG3115 | 249 | consensus Methyltransferase-like protein [General | 95.28 | |
| KOG3201 | 201 | consensus Uncharacterized conserved protein [Funct | 95.22 | |
| PF05958 | 352 | tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas | 95.11 | |
| TIGR01444 | 143 | fkbM_fam methyltransferase, FkbM family. Members o | 94.95 | |
| KOG0024 | 354 | consensus Sorbitol dehydrogenase [Secondary metabo | 94.93 | |
| COG2265 | 432 | TrmA SAM-dependent methyltransferases related to t | 94.93 | |
| KOG2187 | 534 | consensus tRNA uracil-5-methyltransferase and rela | 94.86 | |
| PLN02668 | 386 | indole-3-acetate carboxyl methyltransferase | 94.66 | |
| KOG1122 | 460 | consensus tRNA and rRNA cytosine-C5-methylase (nuc | 94.28 | |
| COG2384 | 226 | Predicted SAM-dependent methyltransferase [General | 94.23 | |
| COG3897 | 218 | Predicted methyltransferase [General function pred | 94.18 | |
| PF05971 | 299 | Methyltransf_10: Protein of unknown function (DUF8 | 93.7 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 93.34 | |
| PF03492 | 334 | Methyltransf_7: SAM dependent carboxyl methyltrans | 93.34 | |
| KOG0822 | 649 | consensus Protein kinase inhibitor [Cell cycle con | 93.34 | |
| KOG2730 | 263 | consensus Methylase [General function prediction o | 93.25 | |
| PF04989 | 206 | CmcI: Cephalosporin hydroxylase; InterPro: IPR0070 | 93.24 | |
| cd08283 | 386 | FDH_like_1 Glutathione-dependent formaldehyde dehy | 93.06 | |
| COG0275 | 314 | Predicted S-adenosylmethionine-dependent methyltra | 92.97 | |
| cd08254 | 338 | hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo | 92.87 | |
| PF06859 | 110 | Bin3: Bicoid-interacting protein 3 (Bin3); InterPr | 92.68 | |
| PF03269 | 177 | DUF268: Caenorhabditis protein of unknown function | 92.49 | |
| COG0286 | 489 | HsdM Type I restriction-modification system methyl | 91.79 | |
| KOG4058 | 199 | consensus Uncharacterized conserved protein [Funct | 91.59 | |
| KOG1562 | 337 | consensus Spermidine synthase [Amino acid transpor | 91.38 | |
| KOG1099 | 294 | consensus SAM-dependent methyltransferase/cell div | 89.7 | |
| KOG2198 | 375 | consensus tRNA cytosine-5-methylases and related e | 89.56 | |
| COG4301 | 321 | Uncharacterized conserved protein [Function unknow | 89.14 | |
| TIGR00561 | 511 | pntA NAD(P) transhydrogenase, alpha subunit. In so | 89.0 | |
| PF07757 | 112 | AdoMet_MTase: Predicted AdoMet-dependent methyltra | 88.93 | |
| KOG2793 | 248 | consensus Putative N2,N2-dimethylguanosine tRNA me | 88.9 | |
| PF03686 | 127 | UPF0146: Uncharacterised protein family (UPF0146); | 87.63 | |
| KOG2920 | 282 | consensus Predicted methyltransferase [General fun | 87.58 | |
| TIGR02822 | 329 | adh_fam_2 zinc-binding alcohol dehydrogenase famil | 87.19 | |
| KOG2671 | 421 | consensus Putative RNA methylase [Replication, rec | 87.04 | |
| PRK09880 | 343 | L-idonate 5-dehydrogenase; Provisional | 86.69 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 85.77 | |
| cd05188 | 271 | MDR Medium chain reductase/dehydrogenase (MDR)/zin | 85.76 | |
| PHA01634 | 156 | hypothetical protein | 84.04 | |
| PRK13699 | 227 | putative methylase; Provisional | 83.45 | |
| COG3510 | 237 | CmcI Cephalosporin hydroxylase [Defense mechanisms | 83.45 | |
| cd08245 | 330 | CAD Cinnamyl alcohol dehydrogenases (CAD) and rela | 83.25 | |
| PF00107 | 130 | ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: | 83.19 | |
| cd08232 | 339 | idonate-5-DH L-idonate 5-dehydrogenase. L-idonate | 83.08 | |
| PF11899 | 380 | DUF3419: Protein of unknown function (DUF3419); In | 82.95 | |
| KOG2539 | 491 | consensus Mitochondrial/chloroplast ribosome small | 82.88 | |
| cd08234 | 334 | threonine_DH_like L-threonine dehydrogenase. L-thr | 82.8 | |
| PRK10742 | 250 | putative methyltransferase; Provisional | 82.27 | |
| COG1063 | 350 | Tdh Threonine dehydrogenase and related Zn-depende | 82.02 | |
| COG3129 | 292 | Predicted SAM-dependent methyltransferase [General | 81.95 | |
| cd00401 | 413 | AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado | 81.43 | |
| COG1867 | 380 | TRM1 N2,N2-dimethylguanosine tRNA methyltransferas | 81.42 | |
| PF02005 | 377 | TRM: N2,N2-dimethylguanosine tRNA methyltransferas | 80.91 | |
| cd08230 | 355 | glucose_DH Glucose dehydrogenase. Glucose dehydrog | 80.51 | |
| cd08255 | 277 | 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_ | 80.29 |
| >KOG1331 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-43 Score=326.68 Aligned_cols=285 Identities=38% Similarity=0.662 Sum_probs=211.1
Q ss_pred CChHHHHHHHHHHHHhhccccccccccchHHHHHHHcCCCCCCEEEEEcCccCcccccCCCcEEEEEeCCHHHHHHHHHc
Q 016157 82 STPELEKKYVHRVYDAIAPHFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGKYLGLNPDCFFVGCDISPSLIKICVDR 161 (394)
Q Consensus 82 ~~~~~~~~~v~~~Yd~~a~~y~~~~~~~~~~l~~~l~~l~~g~~VLDvGCG~G~~l~~~~~~~v~gvD~S~~~l~~a~~~ 161 (394)
...++++++|+.+|+.++.+|+.+++.+||.+..|+...+.|..+||+|||+|.++...|...++|+|++..++..|++.
T Consensus 5 ~~~eleqeyVh~IYd~ia~~fs~tr~~~Wp~v~qfl~~~~~gsv~~d~gCGngky~~~~p~~~~ig~D~c~~l~~~ak~~ 84 (293)
T KOG1331|consen 5 QLTELEQEYVHSIYDKIATHFSATRAAPWPMVRQFLDSQPTGSVGLDVGCGNGKYLGVNPLCLIIGCDLCTGLLGGAKRS 84 (293)
T ss_pred hHHHHHHHHhHHHHHHhhhhccccccCccHHHHHHHhccCCcceeeecccCCcccCcCCCcceeeecchhhhhccccccC
Confidence 35688999999999999999999999999999999999999999999999999999989999999999999999999999
Q ss_pred CC-eEEEeecCCCCCCCCCccEEEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCccchhhhhccccccchHHH
Q 016157 162 GH-EVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKY 240 (394)
Q Consensus 162 ~i-~~~~~D~~~lp~~~~~fD~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~~~~~~~~~~~~~~~~~~~ 240 (394)
+. ....+|+..+|+++.+||.+++++++||+.+.+|+..+|+++.|+|+|||..++++|+.++........|. .+
T Consensus 85 ~~~~~~~ad~l~~p~~~~s~d~~lsiavihhlsT~~RR~~~l~e~~r~lrpgg~~lvyvwa~~q~~~~~~s~~~----~~ 160 (293)
T KOG1331|consen 85 GGDNVCRADALKLPFREESFDAALSIAVIHHLSTRERRERALEELLRVLRPGGNALVYVWALEQHQSSSKSNYK----KG 160 (293)
T ss_pred CCceeehhhhhcCCCCCCccccchhhhhhhhhhhHHHHHHHHHHHHHHhcCCCceEEEEehhhccCcccccchh----cc
Confidence 87 69999999999999999999999999999999999999999999999999999999999998776554443 22
Q ss_pred HHhHhCCCCCCccCCCccccccccccccCCCcccCCCCCCCCCccccccccccccCCCCccccccccccCCCcceeeecc
Q 016157 241 VEEWIGPGSPRVRSPSARTLESIPETEDNGSEEQGKEPKQSVPDKLWESISLTSQSEDDSVISQDVKIITNQQEYFVPWH 320 (394)
Q Consensus 241 ~~~w~~~~~~~~~~~~~~~le~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lvpW~ 320 (394)
.+.|.....+.+.... .....+.+..|.... .++.++. -.+....+.+.+++||.++||+
T Consensus 161 ~~~~~g~~~dv~~~~~-------~~~~~~~~e~~~~~~---------~~~~~~~----~~~~~l~~~p~~e~~~~~q~~~ 220 (293)
T KOG1331|consen 161 VEEVRGDEQDVLAAWG-------LQSEQDRGETQLGNG---------MSLKVKN----RNMAALKVIPPEEQQDVLQPWK 220 (293)
T ss_pred hhhccCCccceecccc-------cccccccccccccCC---------Ccccccc----ccccccccCCchhhcchhcccc
Confidence 2333222111110000 000000000000000 0011110 1112233445788999999998
Q ss_pred cCCCCcccccchhhhhhccccccCCCCCCeeEecccccccchHHHHHhcccCCcEEEEeeeccCCeEEEEEEcC
Q 016157 321 LPYHRAEVSGASACALANGLAKKDDKKGAVVYNRYYHVFCDGELERLASDIDNAVVVDRFFDKSNWCIVLQRTS 394 (394)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~RyyH~F~~gELe~l~~~~~~~~i~~~~~d~~Nwcvi~~k~~ 394 (394)
-+....+. -........+..+...+.+|+||||||++|||.+||.++-+++|+.++||+||||||++|..
T Consensus 221 ~~~~~~~~----~~~~De~~~~~~~~~~~~t~~RYYHvfregEL~~lv~~~~~~~l~S~~~e~gnwcvVaeK~~ 290 (293)
T KOG1331|consen 221 EPIQAPKS----LPPNDEKSTESPSQLRESTFQRYYHVFREGELAELVESVVGLRLLSSGYERGNWCVVAEKKQ 290 (293)
T ss_pred cccccccc----cCCcchhcccchhhhcchhheeeeEecchHHHHHHHhhccceEeeeeccccCCeEEEEeecc
Confidence 43221110 00000000111223455799999999999999999999867999999999999999999963
|
|
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.6e-23 Score=194.06 Aligned_cols=134 Identities=28% Similarity=0.439 Sum_probs=118.9
Q ss_pred HHHHHHHHHhhcccccccc-------ccchHHHHHHHcCCCCCCEEEEEcCccCcccc----cCCCcEEEEEeCCHHHHH
Q 016157 88 KKYVHRVYDAIAPHFSSTR-------FAKWPKVATFLNSLPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIK 156 (394)
Q Consensus 88 ~~~v~~~Yd~~a~~y~~~~-------~~~~~~l~~~l~~l~~g~~VLDvGCG~G~~l~----~~~~~~v~gvD~S~~~l~ 156 (394)
++.|+++|++++..||..+ ++.|++.........+|.+|||||||||.++. ..+..+|+|+|+|+.||+
T Consensus 10 ~~~v~~vF~~ia~~YD~~n~~~S~g~~~~Wr~~~i~~~~~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~ 89 (238)
T COG2226 10 QEKVQKVFDKVAKKYDLMNDLMSFGLHRLWRRALISLLGIKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLE 89 (238)
T ss_pred HHHHHHHHHhhHHHHHhhcccccCcchHHHHHHHHHhhCCCCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHH
Confidence 4689999999999998744 78898877766666789999999999999753 244779999999999999
Q ss_pred HHHHc-------CCeEEEeecCCCCCCCCCccEEEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCccc
Q 016157 157 ICVDR-------GHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQ 224 (394)
Q Consensus 157 ~a~~~-------~i~~~~~D~~~lp~~~~~fD~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~~~ 224 (394)
.|+++ +++|+++|+++|||++++||+|++.+.|+++++ +.++|+|+.|+|||||++++..+....
T Consensus 90 ~a~~k~~~~~~~~i~fv~~dAe~LPf~D~sFD~vt~~fglrnv~d---~~~aL~E~~RVlKpgG~~~vle~~~p~ 161 (238)
T COG2226 90 VAREKLKKKGVQNVEFVVGDAENLPFPDNSFDAVTISFGLRNVTD---IDKALKEMYRVLKPGGRLLVLEFSKPD 161 (238)
T ss_pred HHHHHhhccCccceEEEEechhhCCCCCCccCEEEeeehhhcCCC---HHHHHHHHHHhhcCCeEEEEEEcCCCC
Confidence 99998 378999999999999999999999999999998 899999999999999999999887653
|
|
| >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.6e-22 Score=189.79 Aligned_cols=135 Identities=29% Similarity=0.550 Sum_probs=82.0
Q ss_pred HHHHHHHHHHhhccccccc-------cccchHHHHHHHcCCCCCCEEEEEcCccCcccc-----cCCCcEEEEEeCCHHH
Q 016157 87 EKKYVHRVYDAIAPHFSST-------RFAKWPKVATFLNSLPSGSLVLDAGCGNGKYLG-----LNPDCFFVGCDISPSL 154 (394)
Q Consensus 87 ~~~~v~~~Yd~~a~~y~~~-------~~~~~~~l~~~l~~l~~g~~VLDvGCG~G~~l~-----~~~~~~v~gvD~S~~~ 154 (394)
.+++|.++|+++++.||.. .+..|++...-+....+|.+|||+|||||..+. ..+...|+|+|+|++|
T Consensus 5 k~~~v~~~Fd~ia~~YD~~n~~ls~g~~~~wr~~~~~~~~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~M 84 (233)
T PF01209_consen 5 KEQYVRKMFDRIAPRYDRMNDLLSFGQDRRWRRKLIKLLGLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGM 84 (233)
T ss_dssp --------------------------------SHHHHHHT--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHH
T ss_pred HHHHHHHHHHHHHHHhCCCccccCCcHHHHHHHHHHhccCCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHH
Confidence 3567999999999999974 367787644444456788999999999998643 2456799999999999
Q ss_pred HHHHHHc-------CCeEEEeecCCCCCCCCCccEEEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCccc
Q 016157 155 IKICVDR-------GHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQ 224 (394)
Q Consensus 155 l~~a~~~-------~i~~~~~D~~~lp~~~~~fD~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~~~ 224 (394)
++.|+++ +++++++|++++|+++++||+|++.++++++++ +.++|+|++|+|||||+++|..++...
T Consensus 85 L~~a~~k~~~~~~~~i~~v~~da~~lp~~d~sfD~v~~~fglrn~~d---~~~~l~E~~RVLkPGG~l~ile~~~p~ 158 (233)
T PF01209_consen 85 LEVARKKLKREGLQNIEFVQGDAEDLPFPDNSFDAVTCSFGLRNFPD---RERALREMYRVLKPGGRLVILEFSKPR 158 (233)
T ss_dssp HHHHHHHHHHTT--SEEEEE-BTTB--S-TT-EEEEEEES-GGG-SS---HHHHHHHHHHHEEEEEEEEEEEEEB-S
T ss_pred HHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCceeEEEHHhhHHhhCC---HHHHHHHHHHHcCCCeEEEEeeccCCC
Confidence 9999986 589999999999999999999999999999998 789999999999999999999987654
|
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. |
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.85 E-value=9.5e-21 Score=180.97 Aligned_cols=134 Identities=28% Similarity=0.402 Sum_probs=112.3
Q ss_pred HHHHHHHHHhhcccccccc-------ccchHHHHHHHcCCCCCCEEEEEcCccCccccc-----CCCcEEEEEeCCHHHH
Q 016157 88 KKYVHRVYDAIAPHFSSTR-------FAKWPKVATFLNSLPSGSLVLDAGCGNGKYLGL-----NPDCFFVGCDISPSLI 155 (394)
Q Consensus 88 ~~~v~~~Yd~~a~~y~~~~-------~~~~~~l~~~l~~l~~g~~VLDvGCG~G~~l~~-----~~~~~v~gvD~S~~~l 155 (394)
.+.+.++|+++|..|+... +..|+....-...++++.+|||+|||+|.++.. .+...|+|+|+|++|+
T Consensus 32 ~~~v~~~f~~~A~~YD~~~~~~s~g~~~~~r~~~~~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml 111 (261)
T PLN02233 32 ANERQALFNRIAPVYDNLNDLLSLGQHRIWKRMAVSWSGAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQL 111 (261)
T ss_pred HHHHHHHHHHhhhHHHHhhhhhcCChhHHHHHHHHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHH
Confidence 4568889999999998622 455766544444667889999999999986431 3456999999999999
Q ss_pred HHHHHc----------CCeEEEeecCCCCCCCCCccEEEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCccc
Q 016157 156 KICVDR----------GHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQ 224 (394)
Q Consensus 156 ~~a~~~----------~i~~~~~D~~~lp~~~~~fD~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~~~ 224 (394)
+.|+++ +++++++|+.++|+++++||+|+++.++||+++ +..+|+++.|+|||||++++..|..+.
T Consensus 112 ~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~~~~~l~~~~d---~~~~l~ei~rvLkpGG~l~i~d~~~~~ 187 (261)
T PLN02233 112 AVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAITMGYGLRNVVD---RLKAMQEMYRVLKPGSRVSILDFNKST 187 (261)
T ss_pred HHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEEEecccccCCC---HHHHHHHHHHHcCcCcEEEEEECCCCC
Confidence 999754 478999999999999999999999999999988 889999999999999999999987643
|
|
| >KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.9e-21 Score=177.16 Aligned_cols=153 Identities=23% Similarity=0.324 Sum_probs=133.1
Q ss_pred ccccccCCCCCCCCChHHHH-HHHHHHHHhhccccccc-------cccchHHHHHHHcCCCCCCEEEEEcCccCccc---
Q 016157 69 TGEDQRCSSSSIKSTPELEK-KYVHRVYDAIAPHFSST-------RFAKWPKVATFLNSLPSGSLVLDAGCGNGKYL--- 137 (394)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~-~~v~~~Yd~~a~~y~~~-------~~~~~~~l~~~l~~l~~g~~VLDvGCG~G~~l--- 137 (394)
.....+|+++++.+..+.++ +.|+.+|+.+|..||.. .|+.|+.+..--.....+.++||++||||..+
T Consensus 39 ~~~~~~~Thfgf~tV~e~eke~~V~~vF~~vA~~YD~mND~mSlGiHRlWKd~~v~~L~p~~~m~~lDvaGGTGDiaFri 118 (296)
T KOG1540|consen 39 LSVASKCTHFGFKTVRESEKERLVHHVFESVAKKYDIMNDAMSLGIHRLWKDMFVSKLGPGKGMKVLDVAGGTGDIAFRI 118 (296)
T ss_pred cccccccccccccccchhhhhhHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHhhhccCCCCCCeEEEecCCcchhHHHH
Confidence 34567999999999988887 56999999999999874 38889887766666777899999999999864
Q ss_pred -cc------CCCcEEEEEeCCHHHHHHHHHcC----------CeEEEeecCCCCCCCCCccEEEehhhhhhcCChhHHHH
Q 016157 138 -GL------NPDCFFVGCDISPSLIKICVDRG----------HEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKK 200 (394)
Q Consensus 138 -~~------~~~~~v~gvD~S~~~l~~a~~~~----------i~~~~~D~~~lp~~~~~fD~Vi~~~vl~hl~~~~~~~~ 200 (394)
.. ..+.+|+++|+|+.||..++++. +.|+.+|+++|||++++||+.++.+.|..+++ +.+
T Consensus 119 l~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd~s~D~yTiafGIRN~th---~~k 195 (296)
T KOG1540|consen 119 LRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFDDDSFDAYTIAFGIRNVTH---IQK 195 (296)
T ss_pred HHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCCCCCcceeEEEecceecCCC---HHH
Confidence 22 23479999999999999998872 78999999999999999999999999999999 899
Q ss_pred HHHHHHhccccCcEEEEEEcCccc
Q 016157 201 AIEELVRVVKKGSLVLITVWAVEQ 224 (394)
Q Consensus 201 ~L~ei~r~LkpGG~lli~~~~~~~ 224 (394)
+|+|++|+|||||+|++..|+...
T Consensus 196 ~l~EAYRVLKpGGrf~cLeFskv~ 219 (296)
T KOG1540|consen 196 ALREAYRVLKPGGRFSCLEFSKVE 219 (296)
T ss_pred HHHHHHHhcCCCcEEEEEEccccc
Confidence 999999999999999999987654
|
|
| >PLN02396 hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.9e-17 Score=162.17 Aligned_cols=99 Identities=20% Similarity=0.232 Sum_probs=87.9
Q ss_pred CCCCEEEEEcCccCccccc--CCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeecCCCCCCCCCccEEEehhhhh
Q 016157 121 PSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISIAVLH 190 (394)
Q Consensus 121 ~~g~~VLDvGCG~G~~l~~--~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~lp~~~~~fD~Vi~~~vl~ 190 (394)
.++.+|||||||+|.++.. ..+..|+|+|+|+.|++.|+++ +++++++|+.++++.+++||+|++..+|+
T Consensus 130 ~~g~~ILDIGCG~G~~s~~La~~g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vLe 209 (322)
T PLN02396 130 FEGLKFIDIGCGGGLLSEPLARMGATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVIE 209 (322)
T ss_pred CCCCEEEEeeCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHHH
Confidence 3567999999999997542 4577999999999999999865 47899999999988788999999999999
Q ss_pred hcCChhHHHHHHHHHHhccccCcEEEEEEcCc
Q 016157 191 HLSTESRRKKAIEELVRVVKKGSLVLITVWAV 222 (394)
Q Consensus 191 hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~ 222 (394)
|+.+ +..+|+++.++|||||.+++.++..
T Consensus 210 Hv~d---~~~~L~~l~r~LkPGG~liist~nr 238 (322)
T PLN02396 210 HVAN---PAEFCKSLSALTIPNGATVLSTINR 238 (322)
T ss_pred hcCC---HHHHHHHHHHHcCCCcEEEEEECCc
Confidence 9998 7899999999999999999998754
|
|
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.6e-17 Score=153.87 Aligned_cols=132 Identities=23% Similarity=0.387 Sum_probs=109.0
Q ss_pred HHHHHHHHHhhccccccc-------cccchHHHHHHHcCCCCCCEEEEEcCccCcccc----c-CCCcEEEEEeCCHHHH
Q 016157 88 KKYVHRVYDAIAPHFSST-------RFAKWPKVATFLNSLPSGSLVLDAGCGNGKYLG----L-NPDCFFVGCDISPSLI 155 (394)
Q Consensus 88 ~~~v~~~Yd~~a~~y~~~-------~~~~~~~l~~~l~~l~~g~~VLDvGCG~G~~l~----~-~~~~~v~gvD~S~~~l 155 (394)
.+.++++|++++..|+.. .+..|+........++++.+|||+|||+|.++. . .++..++|+|+|+.++
T Consensus 4 ~~~~~~~f~~~a~~yd~~~~~~~~~~~~~~~~~~l~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~ 83 (231)
T TIGR02752 4 EERVHKVFEKIYKKYDRMNSVISFQRHKKWRKDTMKRMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENML 83 (231)
T ss_pred HHHHHHHHHHhhhHHhHHHHHhcCCchHHHHHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHH
Confidence 568899999999999863 345555433333356788999999999999753 2 3567999999999999
Q ss_pred HHHHHc-------CCeEEEeecCCCCCCCCCccEEEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCc
Q 016157 156 KICVDR-------GHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAV 222 (394)
Q Consensus 156 ~~a~~~-------~i~~~~~D~~~lp~~~~~fD~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~ 222 (394)
+.|+++ +++++.+|+.++++++++||+|++..+++|+++ +..+|+++.++|||||++++.....
T Consensus 84 ~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~---~~~~l~~~~~~Lk~gG~l~~~~~~~ 154 (231)
T TIGR02752 84 SVGRQKVKDAGLHNVELVHGNAMELPFDDNSFDYVTIGFGLRNVPD---YMQVLREMYRVVKPGGKVVCLETSQ 154 (231)
T ss_pred HHHHHHHHhcCCCceEEEEechhcCCCCCCCccEEEEecccccCCC---HHHHHHHHHHHcCcCeEEEEEECCC
Confidence 998875 478899999999888899999999999999988 7899999999999999999876543
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.1e-17 Score=144.79 Aligned_cols=113 Identities=30% Similarity=0.436 Sum_probs=91.2
Q ss_pred cccccchHHHHHHHc-CCCCCCEEEEEcCccCccccc--CCCcEEEEEeCCHHHHHHHHHcCCeEEEeecCCCCCCCCCc
Q 016157 104 STRFAKWPKVATFLN-SLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFG 180 (394)
Q Consensus 104 ~~~~~~~~~l~~~l~-~l~~g~~VLDvGCG~G~~l~~--~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~lp~~~~~f 180 (394)
..+.+.+..+...+. ..+++.+|||||||+|.++.. ..+.+++|+|+++.+++. ........+....+.++++|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~g~D~~~~~~~~---~~~~~~~~~~~~~~~~~~~f 79 (161)
T PF13489_consen 3 RHRYRAYADLLERLLPRLKPGKRVLDIGCGTGSFLRALAKRGFEVTGVDISPQMIEK---RNVVFDNFDAQDPPFPDGSF 79 (161)
T ss_dssp -GCCHCHHHHHHHHHTCTTTTSEEEEESSTTSHHHHHHHHTTSEEEEEESSHHHHHH---TTSEEEEEECHTHHCHSSSE
T ss_pred hhHHHHHHHHHHHHhcccCCCCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHHHHhh---hhhhhhhhhhhhhhccccch
Confidence 334556666655444 467889999999999998653 345599999999999988 44555566556666778999
Q ss_pred cEEEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCc
Q 016157 181 DAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAV 222 (394)
Q Consensus 181 D~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~ 222 (394)
|+|+++.+|+|+++ +..+|+++.++|||||.+++.++..
T Consensus 80 D~i~~~~~l~~~~d---~~~~l~~l~~~LkpgG~l~~~~~~~ 118 (161)
T PF13489_consen 80 DLIICNDVLEHLPD---PEEFLKELSRLLKPGGYLVISDPNR 118 (161)
T ss_dssp EEEEEESSGGGSSH---HHHHHHHHHHCEEEEEEEEEEEEBT
T ss_pred hhHhhHHHHhhccc---HHHHHHHHHHhcCCCCEEEEEEcCC
Confidence 99999999999997 8999999999999999999999764
|
... |
| >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.2e-17 Score=132.93 Aligned_cols=88 Identities=34% Similarity=0.577 Sum_probs=76.3
Q ss_pred EEEcCccCccccc---CCCcEEEEEeCCHHHHHHHHHc----CCeEEEeecCCCCCCCCCccEEEehhhhhhcCChhHHH
Q 016157 127 LDAGCGNGKYLGL---NPDCFFVGCDISPSLIKICVDR----GHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRK 199 (394)
Q Consensus 127 LDvGCG~G~~l~~---~~~~~v~gvD~S~~~l~~a~~~----~i~~~~~D~~~lp~~~~~fD~Vi~~~vl~hl~~~~~~~ 199 (394)
||+|||+|..+.. .++..++|+|+++.+++.++++ ++.+..+|+.++|+++++||+|++..+++|+.+ +.
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~~~---~~ 77 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHLED---PE 77 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHGGGSSH---HH
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhcccccCchheeehHHhCccccccccccccccceeeccC---HH
Confidence 8999999997542 3688999999999999999987 466999999999999999999999999999954 89
Q ss_pred HHHHHHHhccccCcEEEE
Q 016157 200 KAIEELVRVVKKGSLVLI 217 (394)
Q Consensus 200 ~~L~ei~r~LkpGG~lli 217 (394)
++++++.|+|||||+++|
T Consensus 78 ~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 78 AALREIYRVLKPGGRLVI 95 (95)
T ss_dssp HHHHHHHHHEEEEEEEEE
T ss_pred HHHHHHHHHcCcCeEEeC
Confidence 999999999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... |
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.9e-17 Score=153.68 Aligned_cols=122 Identities=20% Similarity=0.311 Sum_probs=99.6
Q ss_pred HHHHHHHHHHhhcccccccc-------ccchHH-HHHHH-cCCCCCCEEEEEcCccCccccc---CCCcEEEEEeCCHHH
Q 016157 87 EKKYVHRVYDAIAPHFSSTR-------FAKWPK-VATFL-NSLPSGSLVLDAGCGNGKYLGL---NPDCFFVGCDISPSL 154 (394)
Q Consensus 87 ~~~~v~~~Yd~~a~~y~~~~-------~~~~~~-l~~~l-~~l~~g~~VLDvGCG~G~~l~~---~~~~~v~gvD~S~~~ 154 (394)
..+.+.++|++++..|+..+ ...|++ +...+ ...+++.+|||||||||.++.. ..+..|+|+|+|++|
T Consensus 7 ~~~~v~~~f~~iA~~YD~~n~~~s~g~~~~wr~~~~~~l~~~~~~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~M 86 (226)
T PRK05785 7 TWEELQEAYNKIPKAYDRANRFISFNQDVRWRAELVKTILKYCGRPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENM 86 (226)
T ss_pred cHHHHHHHHHhhhHHHHHhhhhccCCCcHHHHHHHHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHH
Confidence 45678899999999998743 344654 33333 2335578999999999987542 115699999999999
Q ss_pred HHHHHHcCCeEEEeecCCCCCCCCCccEEEehhhhhhcCChhHHHHHHHHHHhccccC
Q 016157 155 IKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKG 212 (394)
Q Consensus 155 l~~a~~~~i~~~~~D~~~lp~~~~~fD~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpG 212 (394)
++.|+++ ..++++|++++|+++++||+|++..++||+++ +.++|+++.|+|||.
T Consensus 87 l~~a~~~-~~~~~~d~~~lp~~d~sfD~v~~~~~l~~~~d---~~~~l~e~~RvLkp~ 140 (226)
T PRK05785 87 LKMNLVA-DDKVVGSFEALPFRDKSFDVVMSSFALHASDN---IEKVIAEFTRVSRKQ 140 (226)
T ss_pred HHHHHhc-cceEEechhhCCCCCCCEEEEEecChhhccCC---HHHHHHHHHHHhcCc
Confidence 9999886 36789999999999999999999999999988 789999999999994
|
|
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=5.5e-17 Score=153.80 Aligned_cols=133 Identities=25% Similarity=0.339 Sum_probs=107.0
Q ss_pred HHHHHHHHHHhhccccccccccchHHH-HHHHcCCC--CCCEEEEEcCccCccccc--CCCcEEEEEeCCHHHHHHHHHc
Q 016157 87 EKKYVHRVYDAIAPHFSSTRFAKWPKV-ATFLNSLP--SGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR 161 (394)
Q Consensus 87 ~~~~v~~~Yd~~a~~y~~~~~~~~~~l-~~~l~~l~--~g~~VLDvGCG~G~~l~~--~~~~~v~gvD~S~~~l~~a~~~ 161 (394)
+++.+.+.|++.+..|+..... ...+ ..++..++ ++.+|||+|||+|.++.. ..+..++|+|+|+.|++.|+++
T Consensus 5 ~k~~i~~~F~~aa~~Y~~~~~~-q~~~a~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~~D~s~~~l~~a~~~ 83 (251)
T PRK10258 5 NKQAIAAAFGRAAAHYEQHAEL-QRQSADALLAMLPQRKFTHVLDAGCGPGWMSRYWRERGSQVTALDLSPPMLAQARQK 83 (251)
T ss_pred CHHHHHHHHHHHHHhHhHHHHH-HHHHHHHHHHhcCccCCCeEEEeeCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHhh
Confidence 4677888999999999853321 1122 22223232 467999999999987542 3567999999999999999987
Q ss_pred --CCeEEEeecCCCCCCCCCccEEEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCcc
Q 016157 162 --GHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVE 223 (394)
Q Consensus 162 --~i~~~~~D~~~lp~~~~~fD~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~~ 223 (394)
...++++|+..+|+++++||+|+++.+++++.+ +..+|.++.++|||||.+++.++...
T Consensus 84 ~~~~~~~~~d~~~~~~~~~~fD~V~s~~~l~~~~d---~~~~l~~~~~~Lk~gG~l~~~~~~~~ 144 (251)
T PRK10258 84 DAADHYLAGDIESLPLATATFDLAWSNLAVQWCGN---LSTALRELYRVVRPGGVVAFTTLVQG 144 (251)
T ss_pred CCCCCEEEcCcccCcCCCCcEEEEEECchhhhcCC---HHHHHHHHHHHcCCCeEEEEEeCCCC
Confidence 357899999999998899999999999999988 78999999999999999999988653
|
|
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=4.9e-17 Score=154.69 Aligned_cols=97 Identities=22% Similarity=0.317 Sum_probs=87.1
Q ss_pred CCCCEEEEEcCccCcccc----cCCCcEEEEEeCCHHHHHHHHHcCCeEEEeecCCCCCCCCCccEEEehhhhhhcCChh
Q 016157 121 PSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTES 196 (394)
Q Consensus 121 ~~g~~VLDvGCG~G~~l~----~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~lp~~~~~fD~Vi~~~vl~hl~~~~ 196 (394)
.++.+|||||||+|.++. ..++..|+|+|+|+.|++.|++++++++++|+.+++ .+++||+|++..++||+++
T Consensus 28 ~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~~-~~~~fD~v~~~~~l~~~~d-- 104 (255)
T PRK14103 28 ERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARERGVDARTGDVRDWK-PKPDTDVVVSNAALQWVPE-- 104 (255)
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhcCCcEEEcChhhCC-CCCCceEEEEehhhhhCCC--
Confidence 467899999999999754 246789999999999999999999999999998875 4679999999999999988
Q ss_pred HHHHHHHHHHhccccCcEEEEEEcC
Q 016157 197 RRKKAIEELVRVVKKGSLVLITVWA 221 (394)
Q Consensus 197 ~~~~~L~ei~r~LkpGG~lli~~~~ 221 (394)
+..+++++.++|||||++++.++.
T Consensus 105 -~~~~l~~~~~~LkpgG~l~~~~~~ 128 (255)
T PRK14103 105 -HADLLVRWVDELAPGSWIAVQVPG 128 (255)
T ss_pred -HHHHHHHHHHhCCCCcEEEEEcCC
Confidence 789999999999999999998764
|
|
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=6.6e-17 Score=153.88 Aligned_cols=127 Identities=23% Similarity=0.354 Sum_probs=100.8
Q ss_pred HHHhhcccccccccc----------chHHHHHHHcCC-CCCCEEEEEcCccCccccc--CCCcEEEEEeCCHHHHHHHHH
Q 016157 94 VYDAIAPHFSSTRFA----------KWPKVATFLNSL-PSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVD 160 (394)
Q Consensus 94 ~Yd~~a~~y~~~~~~----------~~~~l~~~l~~l-~~g~~VLDvGCG~G~~l~~--~~~~~v~gvD~S~~~l~~a~~ 160 (394)
.||.++.+|+...|. .|..+..++..+ .++.+|||+|||+|.++.. ..+..|+|+|+|+.|++.|++
T Consensus 5 ~fd~~a~~f~~~~y~~~~g~~r~~~~~~~~~~~l~~l~~~~~~vLDiGcG~G~~a~~la~~g~~v~~vD~s~~~l~~a~~ 84 (255)
T PRK11036 5 NFDDIAEKFSRNIYGTTKGQIRQAILWQDLDRLLAELPPRPLRVLDAGGGEGQTAIKLAELGHQVILCDLSAEMIQRAKQ 84 (255)
T ss_pred ChhhHHHHHHHhccCCCccHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCchHHHHHHHHcCCEEEEEECCHHHHHHHHH
Confidence 366666666653322 355566666654 3457999999999997532 446799999999999999987
Q ss_pred c--------CCeEEEeecCCCC-CCCCCccEEEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCcc
Q 016157 161 R--------GHEVLVADAVNLP-YRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVE 223 (394)
Q Consensus 161 ~--------~i~~~~~D~~~lp-~~~~~fD~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~~ 223 (394)
+ +++++++|+.+++ +.+++||+|++..+++|+.+ +..+|+++.++|||||++++..++..
T Consensus 85 ~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~vl~~~~~---~~~~l~~~~~~LkpgG~l~i~~~n~~ 153 (255)
T PRK11036 85 AAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHAVLEWVAD---PKSVLQTLWSVLRPGGALSLMFYNAN 153 (255)
T ss_pred HHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehhHHHhhCC---HHHHHHHHHHHcCCCeEEEEEEECcc
Confidence 5 3678999998874 55789999999999999988 78999999999999999999987754
|
|
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.8e-16 Score=157.03 Aligned_cols=99 Identities=25% Similarity=0.376 Sum_probs=88.2
Q ss_pred CCCCEEEEEcCccCccccc---CCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeecCCCCCCCCCccEEEehhhh
Q 016157 121 PSGSLVLDAGCGNGKYLGL---NPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISIAVL 189 (394)
Q Consensus 121 ~~g~~VLDvGCG~G~~l~~---~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~lp~~~~~fD~Vi~~~vl 189 (394)
.++.+|||||||+|.++.. ..+..|+|+|+|+.|++.|+++ +++++++|+.++|+++++||+|++..++
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~~ 196 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMESG 196 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCch
Confidence 5678999999999987532 2367999999999999988764 4789999999999999999999999999
Q ss_pred hhcCChhHHHHHHHHHHhccccCcEEEEEEcCc
Q 016157 190 HHLSTESRRKKAIEELVRVVKKGSLVLITVWAV 222 (394)
Q Consensus 190 ~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~ 222 (394)
+|+++ +..+++++.|+|||||+|++.+|..
T Consensus 197 ~h~~d---~~~~l~e~~rvLkpGG~lvi~~~~~ 226 (340)
T PLN02244 197 EHMPD---KRKFVQELARVAAPGGRIIIVTWCH 226 (340)
T ss_pred hccCC---HHHHHHHHHHHcCCCcEEEEEEecc
Confidence 99998 7899999999999999999998864
|
|
| >PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.3e-16 Score=141.64 Aligned_cols=144 Identities=24% Similarity=0.425 Sum_probs=117.4
Q ss_pred HHHHcCCCCCCEEEEEcCccCccccc---CCCcEEEEEeCCHHHHHHHHHcCCeEEEeecCC-CC-CCCCCccEEEehhh
Q 016157 114 ATFLNSLPSGSLVLDAGCGNGKYLGL---NPDCFFVGCDISPSLIKICVDRGHEVLVADAVN-LP-YRSDFGDAAISIAV 188 (394)
Q Consensus 114 ~~~l~~l~~g~~VLDvGCG~G~~l~~---~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~-lp-~~~~~fD~Vi~~~v 188 (394)
..+...++||++|||+|||.|.++.. ..++..+|+|++++.+..|.++|+.++++|+.+ |+ |++++||.||++.+
T Consensus 5 ~~I~~~I~pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~rGv~Viq~Dld~gL~~f~d~sFD~VIlsqt 84 (193)
T PF07021_consen 5 QIIAEWIEPGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVARGVSVIQGDLDEGLADFPDQSFDYVILSQT 84 (193)
T ss_pred HHHHHHcCCCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHHcCCCEEECCHHHhHhhCCCCCccEEehHhH
Confidence 34455678999999999999998653 578899999999999999999999999999976 43 88999999999999
Q ss_pred hhhcCChhHHHHHHHHHHhccccCcEEEEEEcCcc--chhhhh-ccccccchHHHHHhHhCCCCCCccCCCccccccccc
Q 016157 189 LHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVE--QEDKSL-VTKWTPLTQKYVEEWIGPGSPRVRSPSARTLESIPE 265 (394)
Q Consensus 189 l~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~~--~~~~~~-~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~le~i~e 265 (394)
|+++.. +..+|+||.|+ |...+++++++. ...... +.+..|.+..+...||. .|++++.+..+++.+-+
T Consensus 85 LQ~~~~---P~~vL~EmlRV---gr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYd--TPNih~~Ti~DFe~lc~ 156 (193)
T PF07021_consen 85 LQAVRR---PDEVLEEMLRV---GRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYD--TPNIHLCTIKDFEDLCR 156 (193)
T ss_pred HHhHhH---HHHHHHHHHHh---cCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccC--CCCcccccHHHHHHHHH
Confidence 999987 88999999876 556677766553 333333 36778888888899997 67888888777776654
|
Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells []. |
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.63 E-value=4.1e-16 Score=143.97 Aligned_cols=100 Identities=22% Similarity=0.315 Sum_probs=88.3
Q ss_pred CCCEEEEEcCccCcccc--cCCCcEEEEEeCCHHHHHHHHHc----C--CeEEEeecCCCCCCCCCccEEEehhhhhhcC
Q 016157 122 SGSLVLDAGCGNGKYLG--LNPDCFFVGCDISPSLIKICVDR----G--HEVLVADAVNLPYRSDFGDAAISIAVLHHLS 193 (394)
Q Consensus 122 ~g~~VLDvGCG~G~~l~--~~~~~~v~gvD~S~~~l~~a~~~----~--i~~~~~D~~~lp~~~~~fD~Vi~~~vl~hl~ 193 (394)
+|.+|||||||-|.++. +..|..|+|+|+++.+++.|+.+ + +++.+..++++....++||+|+|..||+|++
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~Ga~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEHv~ 138 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARLGASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLEHVP 138 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHCCCeeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHHccC
Confidence 78999999999998865 35679999999999999999976 3 4588888888876668999999999999999
Q ss_pred ChhHHHHHHHHHHhccccCcEEEEEEcCccc
Q 016157 194 TESRRKKAIEELVRVVKKGSLVLITVWAVEQ 224 (394)
Q Consensus 194 ~~~~~~~~L~ei~r~LkpGG~lli~~~~~~~ 224 (394)
+ +..+++.+.+.+||||.+++++.....
T Consensus 139 d---p~~~~~~c~~lvkP~G~lf~STinrt~ 166 (243)
T COG2227 139 D---PESFLRACAKLVKPGGILFLSTINRTL 166 (243)
T ss_pred C---HHHHHHHHHHHcCCCcEEEEeccccCH
Confidence 9 788999999999999999999987543
|
|
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.2e-15 Score=126.06 Aligned_cols=97 Identities=32% Similarity=0.530 Sum_probs=80.8
Q ss_pred CCCEEEEEcCccCcccc----cCCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeec-CCCCCCCCCccEEEehh-
Q 016157 122 SGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADA-VNLPYRSDFGDAAISIA- 187 (394)
Q Consensus 122 ~g~~VLDvGCG~G~~l~----~~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~-~~lp~~~~~fD~Vi~~~- 187 (394)
|+.+|||||||+|.++. ..++.+++|+|+|+.|++.|+++ +++++++|+ ..... .+.||+|++..
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~D~v~~~~~ 79 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDF-LEPFDLVICSGF 79 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTT-SSCEEEEEECSG
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCccc-CCCCCEEEECCC
Confidence 57899999999999753 24889999999999999999887 689999999 33333 45699999999
Q ss_pred hhhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 016157 188 VLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 188 vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~ 219 (394)
+++++...+.+.++|+.+.+.|+|||++++..
T Consensus 80 ~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 80 TLHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp SGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 66655543447899999999999999999975
|
... |
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=5.4e-15 Score=141.47 Aligned_cols=104 Identities=26% Similarity=0.309 Sum_probs=89.8
Q ss_pred CCCCCCEEEEEcCccCccccc---CCCcEEEEEeCCHHHHHHHHHc-----CCeEEEeecCCCCCCCCCccEEEehhhhh
Q 016157 119 SLPSGSLVLDAGCGNGKYLGL---NPDCFFVGCDISPSLIKICVDR-----GHEVLVADAVNLPYRSDFGDAAISIAVLH 190 (394)
Q Consensus 119 ~l~~g~~VLDvGCG~G~~l~~---~~~~~v~gvD~S~~~l~~a~~~-----~i~~~~~D~~~lp~~~~~fD~Vi~~~vl~ 190 (394)
.+.++.+|||||||+|..+.. ..+..|+|+|+|+.|++.|+++ ++.+..+|+...|+++++||+|++..+++
T Consensus 49 ~l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~~~~~~~~~FD~V~s~~~l~ 128 (263)
T PTZ00098 49 ELNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSDKNKIEFEANDILKKDFPENTFDMIYSRDAIL 128 (263)
T ss_pred CCCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCcCCceEEEECCcccCCCCCCCeEEEEEhhhHH
Confidence 457889999999999986432 2467999999999999999986 47889999999999889999999999999
Q ss_pred hcCChhHHHHHHHHHHhccccCcEEEEEEcCcc
Q 016157 191 HLSTESRRKKAIEELVRVVKKGSLVLITVWAVE 223 (394)
Q Consensus 191 hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~~ 223 (394)
|++... +..+|+++.++|||||+|++..+...
T Consensus 129 h~~~~d-~~~~l~~i~r~LkPGG~lvi~d~~~~ 160 (263)
T PTZ00098 129 HLSYAD-KKKLFEKCYKWLKPNGILLITDYCAD 160 (263)
T ss_pred hCCHHH-HHHHHHHHHHHcCCCcEEEEEEeccc
Confidence 987433 78999999999999999999987543
|
|
| >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=4.1e-15 Score=140.97 Aligned_cols=98 Identities=18% Similarity=0.359 Sum_probs=85.1
Q ss_pred CCCCCEEEEEcCccCcccc------cCCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeecCCCCCCCCCccEEEe
Q 016157 120 LPSGSLVLDAGCGNGKYLG------LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAIS 185 (394)
Q Consensus 120 l~~g~~VLDvGCG~G~~l~------~~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~lp~~~~~fD~Vi~ 185 (394)
++++.+|||||||+|..+. ..++.+++|+|+|+.|++.|+++ +++++++|+.++|+. .+|+|++
T Consensus 54 ~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~--~~D~vv~ 131 (247)
T PRK15451 54 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIE--NASMVVL 131 (247)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCC--CCCEEeh
Confidence 4678899999999999742 24778999999999999999876 478999999988764 4899999
Q ss_pred hhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 016157 186 IAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (394)
Q Consensus 186 ~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~ 220 (394)
+.++||++..+ +..+++++.++|||||.|++...
T Consensus 132 ~~~l~~l~~~~-~~~~l~~i~~~LkpGG~l~l~e~ 165 (247)
T PRK15451 132 NFTLQFLEPSE-RQALLDKIYQGLNPGGALVLSEK 165 (247)
T ss_pred hhHHHhCCHHH-HHHHHHHHHHhcCCCCEEEEEEe
Confidence 99999998644 68999999999999999999864
|
|
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.4e-15 Score=131.78 Aligned_cols=97 Identities=34% Similarity=0.584 Sum_probs=85.4
Q ss_pred CCCCEEEEEcCccCcccc-----cCCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeecCCCC--CCCCCccEEEeh
Q 016157 121 PSGSLVLDAGCGNGKYLG-----LNPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLP--YRSDFGDAAISI 186 (394)
Q Consensus 121 ~~g~~VLDvGCG~G~~l~-----~~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~lp--~~~~~fD~Vi~~ 186 (394)
..+.+|||+|||+|.++. ..++.+++|+|+|+.|++.|+++ +++++++|+.+++ +. +.||+|++.
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~-~~~D~I~~~ 80 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELE-EKFDIIISN 80 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSS-TTEEEEEEE
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccccC-CCeeEEEEc
Confidence 356899999999999742 36688999999999999999985 5799999999987 55 899999999
Q ss_pred hhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 016157 187 AVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 221 (394)
Q Consensus 187 ~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~ 221 (394)
.+++|+.+ +..+|+++.++|++||.+++..+.
T Consensus 81 ~~l~~~~~---~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 81 GVLHHFPD---PEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp STGGGTSH---HHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred CchhhccC---HHHHHHHHHHHcCCCcEEEEEECC
Confidence 99999988 789999999999999999999876
|
... |
| >KOG4300 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.60 E-value=4.4e-15 Score=133.31 Aligned_cols=130 Identities=22% Similarity=0.339 Sum_probs=102.7
Q ss_pred HHHHHHHHHhhccccccccccchHHHHHHHcCCCCCCEEEEEcCccCccccc---CCCcEEEEEeCCHHHHHHHHHc---
Q 016157 88 KKYVHRVYDAIAPHFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGKYLGL---NPDCFFVGCDISPSLIKICVDR--- 161 (394)
Q Consensus 88 ~~~v~~~Yd~~a~~y~~~~~~~~~~l~~~l~~l~~g~~VLDvGCG~G~~l~~---~~~~~v~gvD~S~~~l~~a~~~--- 161 (394)
......+|+++++.|. ...+..+..++..-.. ..|||||||||..... .|+..|+++|+++.|-+++.++
T Consensus 46 ~~~ft~~yne~~~~yk---relFs~i~~~~gk~~K-~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E 121 (252)
T KOG4300|consen 46 NSNFTSIYNEIADSYK---RELFSGIYYFLGKSGK-GDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAE 121 (252)
T ss_pred hhHHHHHHHHHHHHHH---HHHHhhhHHHhcccCc-cceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhh
Confidence 3445667888888773 2223333344443333 3689999999998775 4688999999999999998776
Q ss_pred ----CCe-EEEeecCCCC-CCCCCccEEEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCccc
Q 016157 162 ----GHE-VLVADAVNLP-YRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQ 224 (394)
Q Consensus 162 ----~i~-~~~~D~~~lp-~~~~~fD~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~~~ 224 (394)
++. |+.++.+++| +.++++|+|++..+|....+ +.+.|+++.|+|||||++++......+
T Consensus 122 ~k~~~~~~fvva~ge~l~~l~d~s~DtVV~TlvLCSve~---~~k~L~e~~rlLRpgG~iifiEHva~~ 187 (252)
T KOG4300|consen 122 KKPLQVERFVVADGENLPQLADGSYDTVVCTLVLCSVED---PVKQLNEVRRLLRPGGRIIFIEHVAGE 187 (252)
T ss_pred ccCcceEEEEeechhcCcccccCCeeeEEEEEEEeccCC---HHHHHHHHHHhcCCCcEEEEEeccccc
Confidence 455 8999999999 88999999999999999988 889999999999999999998765544
|
|
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.3e-14 Score=132.97 Aligned_cols=108 Identities=24% Similarity=0.257 Sum_probs=86.8
Q ss_pred chHHHHHHHcCCCCCCEEEEEcCccCccccc--CCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeecCCCCCCCCC
Q 016157 109 KWPKVATFLNSLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDF 179 (394)
Q Consensus 109 ~~~~l~~~l~~l~~g~~VLDvGCG~G~~l~~--~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~lp~~~~~ 179 (394)
+-+.+...+... ++.+|||+|||+|.++.. ..+.+|+|+|+|+.|++.++++ ++++...|+.++++ +++
T Consensus 18 ~~~~l~~~l~~~-~~~~vLDiGcG~G~~a~~La~~g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~-~~~ 95 (197)
T PRK11207 18 THSEVLEAVKVV-KPGKTLDLGCGNGRNSLYLAANGFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTF-DGE 95 (197)
T ss_pred ChHHHHHhcccC-CCCcEEEECCCCCHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCc-CCC
Confidence 345666666544 457999999999997542 4467999999999999998865 46788899988776 467
Q ss_pred ccEEEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 016157 180 GDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 180 fD~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~ 219 (394)
||+|+++.++||++... +..+++++.++|||||.+++..
T Consensus 96 fD~I~~~~~~~~~~~~~-~~~~l~~i~~~LkpgG~~~~~~ 134 (197)
T PRK11207 96 YDFILSTVVLMFLEAKT-IPGLIANMQRCTKPGGYNLIVA 134 (197)
T ss_pred cCEEEEecchhhCCHHH-HHHHHHHHHHHcCCCcEEEEEE
Confidence 99999999999987533 7899999999999999966543
|
|
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.1e-14 Score=138.60 Aligned_cols=98 Identities=22% Similarity=0.323 Sum_probs=85.4
Q ss_pred CCCCCEEEEEcCccCcccc----cCCCcEEEEEeCCHHHHHHHHHc--CCeEEEeecCCCCCCCCCccEEEehhhhhhcC
Q 016157 120 LPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR--GHEVLVADAVNLPYRSDFGDAAISIAVLHHLS 193 (394)
Q Consensus 120 l~~g~~VLDvGCG~G~~l~----~~~~~~v~gvD~S~~~l~~a~~~--~i~~~~~D~~~lp~~~~~fD~Vi~~~vl~hl~ 193 (394)
+.++.+|||||||+|.++. ..++..|+|+|+|+.|++.|+++ ++.++.+|+..++ ..++||+|+++.++||++
T Consensus 29 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~d~~~~~-~~~~fD~v~~~~~l~~~~ 107 (258)
T PRK01683 29 LENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLPDCQFVEADIASWQ-PPQALDLIFANASLQWLP 107 (258)
T ss_pred CcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCCCCeEEECchhccC-CCCCccEEEEccChhhCC
Confidence 4567899999999998753 35678999999999999999987 6889999998765 356899999999999998
Q ss_pred ChhHHHHHHHHHHhccccCcEEEEEEcC
Q 016157 194 TESRRKKAIEELVRVVKKGSLVLITVWA 221 (394)
Q Consensus 194 ~~~~~~~~L~ei~r~LkpGG~lli~~~~ 221 (394)
+ ...+|+++.++|||||.+++..+.
T Consensus 108 d---~~~~l~~~~~~LkpgG~~~~~~~~ 132 (258)
T PRK01683 108 D---HLELFPRLVSLLAPGGVLAVQMPD 132 (258)
T ss_pred C---HHHHHHHHHHhcCCCcEEEEECCC
Confidence 8 789999999999999999997643
|
|
| >TIGR00740 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.57 E-value=1e-14 Score=137.48 Aligned_cols=99 Identities=19% Similarity=0.301 Sum_probs=85.0
Q ss_pred CCCCCEEEEEcCccCcccc----c--CCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeecCCCCCCCCCccEEEe
Q 016157 120 LPSGSLVLDAGCGNGKYLG----L--NPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAIS 185 (394)
Q Consensus 120 l~~g~~VLDvGCG~G~~l~----~--~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~lp~~~~~fD~Vi~ 185 (394)
++++.+|||||||+|.++. . .++..++|+|+|+.|++.|+++ +++++++|+.+++++ .+|+|++
T Consensus 51 ~~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~~d~v~~ 128 (239)
T TIGR00740 51 VTPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIK--NASMVIL 128 (239)
T ss_pred CCCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCC--CCCEEee
Confidence 3577899999999999753 1 3678999999999999999875 368999999998864 4899999
Q ss_pred hhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 016157 186 IAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 221 (394)
Q Consensus 186 ~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~ 221 (394)
..++||+++.+ +..+|+++.++|||||.+++..+.
T Consensus 129 ~~~l~~~~~~~-~~~~l~~i~~~LkpgG~l~i~d~~ 163 (239)
T TIGR00740 129 NFTLQFLPPED-RIALLTKIYEGLNPNGVLVLSEKF 163 (239)
T ss_pred ecchhhCCHHH-HHHHHHHHHHhcCCCeEEEEeecc
Confidence 99999997644 789999999999999999998753
|
A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. |
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.6e-14 Score=130.78 Aligned_cols=108 Identities=19% Similarity=0.174 Sum_probs=84.9
Q ss_pred HHHHHHHcCCCCCCEEEEEcCccCccccc--CCCcEEEEEeCCHHHHHHHHHc----C--CeEEEeecCCCCCCCCCccE
Q 016157 111 PKVATFLNSLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR----G--HEVLVADAVNLPYRSDFGDA 182 (394)
Q Consensus 111 ~~l~~~l~~l~~g~~VLDvGCG~G~~l~~--~~~~~v~gvD~S~~~l~~a~~~----~--i~~~~~D~~~lp~~~~~fD~ 182 (394)
..+...+...+ +.+|||+|||+|.++.. ..+..|+|+|+|+.|++.++++ + +.+..+|+...++. ++||+
T Consensus 20 ~~l~~~~~~~~-~~~vLDiGcG~G~~a~~la~~g~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~ 97 (195)
T TIGR00477 20 SAVREAVKTVA-PCKTLDLGCGQGRNSLYLSLAGYDVRAWDHNPASIASVLDMKARENLPLRTDAYDINAAALN-EDYDF 97 (195)
T ss_pred HHHHHHhccCC-CCcEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhcccc-CCCCE
Confidence 34555555444 45999999999997532 3577999999999999988755 3 56677787766653 57999
Q ss_pred EEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 016157 183 AISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 221 (394)
Q Consensus 183 Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~ 221 (394)
|+++.++||++... +..+++++.++|||||++++..|.
T Consensus 98 I~~~~~~~~~~~~~-~~~~l~~~~~~LkpgG~lli~~~~ 135 (195)
T TIGR00477 98 IFSTVVFMFLQAGR-VPEIIANMQAHTRPGGYNLIVAAM 135 (195)
T ss_pred EEEecccccCCHHH-HHHHHHHHHHHhCCCcEEEEEEec
Confidence 99999999997543 789999999999999998777664
|
Part of a tellurite-reducing operon tehA and tehB |
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.2e-14 Score=143.11 Aligned_cols=137 Identities=19% Similarity=0.245 Sum_probs=104.6
Q ss_pred CCChHHHHHHHHH--HHHhhcccccccc-ccchHH-H-HHHHc---CCCCCCEEEEEcCccCcccc----cCCCcEEEEE
Q 016157 81 KSTPELEKKYVHR--VYDAIAPHFSSTR-FAKWPK-V-ATFLN---SLPSGSLVLDAGCGNGKYLG----LNPDCFFVGC 148 (394)
Q Consensus 81 ~~~~~~~~~~v~~--~Yd~~a~~y~~~~-~~~~~~-l-~~~l~---~l~~g~~VLDvGCG~G~~l~----~~~~~~v~gv 148 (394)
.+.+..-+++... +|+.++..|+... ...|.. + ...+. ...++.+|||||||+|.++. ..++..++|+
T Consensus 64 ~~~~~~~~h~~~~~~~y~~lA~~YD~~~~~~~~~e~~r~~~l~~~~l~~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgV 143 (340)
T PLN02490 64 ASQPRFIQHKKEAFWFYRFLSIVYDHIINPGHWTEDMRDDALEPADLSDRNLKVVDVGGGTGFTTLGIVKHVDAKNVTIL 143 (340)
T ss_pred ccccchhhhhhcceeEccceeeecCCCeecCcchHHHHHHHHhhcccCCCCCEEEEEecCCcHHHHHHHHHCCCCEEEEE
Confidence 3444444444444 5788888888632 233332 1 11222 22467899999999998642 2456799999
Q ss_pred eCCHHHHHHHHHc----CCeEEEeecCCCCCCCCCccEEEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 016157 149 DISPSLIKICVDR----GHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (394)
Q Consensus 149 D~S~~~l~~a~~~----~i~~~~~D~~~lp~~~~~fD~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~ 220 (394)
|+|+.|++.|+++ +++++.+|+.++++.+++||+|++..+++|+++ +..+|+++.++|||||++++...
T Consensus 144 D~S~~mL~~A~~k~~~~~i~~i~gD~e~lp~~~~sFDvVIs~~~L~~~~d---~~~~L~e~~rvLkPGG~LvIi~~ 216 (340)
T PLN02490 144 DQSPHQLAKAKQKEPLKECKIIEGDAEDLPFPTDYADRYVSAGSIEYWPD---PQRGIKEAYRVLKIGGKACLIGP 216 (340)
T ss_pred ECCHHHHHHHHHhhhccCCeEEeccHHhCCCCCCceeEEEEcChhhhCCC---HHHHHHHHHHhcCCCcEEEEEEe
Confidence 9999999999886 688999999999998899999999999999998 67899999999999999988653
|
|
| >TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.3e-14 Score=132.12 Aligned_cols=104 Identities=24% Similarity=0.377 Sum_probs=87.2
Q ss_pred HHHHHcCCCCCCEEEEEcCccCcccc----cCCCcEEEEEeCCHHHHHHHHHc--CCeEEEeecCCCCCCCCCccEEEeh
Q 016157 113 VATFLNSLPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR--GHEVLVADAVNLPYRSDFGDAAISI 186 (394)
Q Consensus 113 l~~~l~~l~~g~~VLDvGCG~G~~l~----~~~~~~v~gvD~S~~~l~~a~~~--~i~~~~~D~~~lp~~~~~fD~Vi~~ 186 (394)
+..++..++++.+|||||||+|.++. ..++..++|+|+|+.|++.|+++ ++.+.++|+.+ |+++++||+|++.
T Consensus 34 ~~~~l~~~~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~~~~~~~~d~~~-~~~~~sfD~V~~~ 112 (204)
T TIGR03587 34 FARALNRLPKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLPNINIIQGSLFD-PFKDNFFDLVLTK 112 (204)
T ss_pred HHHHHHhcCCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCCCCcEEEeeccC-CCCCCCEEEEEEC
Confidence 33445566778899999999999754 24678999999999999999985 67899999988 8889999999999
Q ss_pred hhhhhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 016157 187 AVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (394)
Q Consensus 187 ~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~ 220 (394)
.+++|++. +.+.++++++.|++ ++.++|..+
T Consensus 113 ~vL~hl~p-~~~~~~l~el~r~~--~~~v~i~e~ 143 (204)
T TIGR03587 113 GVLIHINP-DNLPTAYRELYRCS--NRYILIAEY 143 (204)
T ss_pred ChhhhCCH-HHHHHHHHHHHhhc--CcEEEEEEe
Confidence 99999974 44789999999998 567777765
|
Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme |
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.8e-14 Score=132.28 Aligned_cols=130 Identities=19% Similarity=0.233 Sum_probs=98.5
Q ss_pred HHHHHHhhccccccccccchHHHHHHHcCC--CCCCEEEEEcCccCcccc--cCCCcEEEEEeCCHHHHHHHHHc-----
Q 016157 91 VHRVYDAIAPHFSSTRFAKWPKVATFLNSL--PSGSLVLDAGCGNGKYLG--LNPDCFFVGCDISPSLIKICVDR----- 161 (394)
Q Consensus 91 v~~~Yd~~a~~y~~~~~~~~~~l~~~l~~l--~~g~~VLDvGCG~G~~l~--~~~~~~v~gvD~S~~~l~~a~~~----- 161 (394)
+.+.|..-...|+. ..+-+.+..++..+ +++.+|||+|||.|..+. +..|..|+|+|+|+.+++.+.+.
T Consensus 3 Wd~ry~~~~~~w~~--~~p~~~l~~~~~~l~~~~~~rvLd~GCG~G~da~~LA~~G~~V~gvD~S~~Ai~~~~~~~~~~~ 80 (213)
T TIGR03840 3 WHERWQEGQIGFHQ--SEVNPLLVKHWPALGLPAGARVFVPLCGKSLDLAWLAEQGHRVLGVELSEIAVEQFFAENGLTP 80 (213)
T ss_pred HHHHHhcCCCCCcc--CCCCHHHHHHHHhhCCCCCCeEEEeCCCchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHcCCCc
Confidence 45556554333432 23334555565544 677899999999999754 36788999999999999986331
Q ss_pred --------------CCeEEEeecCCCCCC-CCCccEEEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCcc
Q 016157 162 --------------GHEVLVADAVNLPYR-SDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVE 223 (394)
Q Consensus 162 --------------~i~~~~~D~~~lp~~-~~~fD~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~~ 223 (394)
+++++++|+.+++.. .+.||.|+...+++|++... +..+++.+.++|||||++++.++...
T Consensus 81 ~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~fD~i~D~~~~~~l~~~~-R~~~~~~l~~lLkpgG~~ll~~~~~~ 156 (213)
T TIGR03840 81 TVTQQGEFTRYRAGNIEIFCGDFFALTAADLGPVDAVYDRAALIALPEEM-RQRYAAHLLALLPPGARQLLITLDYD 156 (213)
T ss_pred ceeccccceeeecCceEEEEccCCCCCcccCCCcCEEEechhhccCCHHH-HHHHHHHHHHHcCCCCeEEEEEEEcC
Confidence 467899999988743 46799999999999997655 78899999999999999888877654
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >TIGR02072 BioC biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.1e-14 Score=133.91 Aligned_cols=99 Identities=27% Similarity=0.413 Sum_probs=87.4
Q ss_pred CCCEEEEEcCccCcccc----cCCCcEEEEEeCCHHHHHHHHHc---CCeEEEeecCCCCCCCCCccEEEehhhhhhcCC
Q 016157 122 SGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR---GHEVLVADAVNLPYRSDFGDAAISIAVLHHLST 194 (394)
Q Consensus 122 ~g~~VLDvGCG~G~~l~----~~~~~~v~gvD~S~~~l~~a~~~---~i~~~~~D~~~lp~~~~~fD~Vi~~~vl~hl~~ 194 (394)
.+.+|||+|||+|.++. ..+...++|+|+++.+++.++++ ++.++.+|+.++++.+++||+|++..++||+.+
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~vi~~~~l~~~~~ 113 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLSENVQFICGDAEKLPLEDSSFDLIVSNLALQWCDD 113 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcCCCCeEEecchhhCCCCCCceeEEEEhhhhhhccC
Confidence 34689999999998643 35667899999999999999887 478999999999988899999999999999988
Q ss_pred hhHHHHHHHHHHhccccCcEEEEEEcCcc
Q 016157 195 ESRRKKAIEELVRVVKKGSLVLITVWAVE 223 (394)
Q Consensus 195 ~~~~~~~L~ei~r~LkpGG~lli~~~~~~ 223 (394)
+..+|.++.++|||||.+++.++...
T Consensus 114 ---~~~~l~~~~~~L~~~G~l~~~~~~~~ 139 (240)
T TIGR02072 114 ---LSQALSELARVLKPGGLLAFSTFGPG 139 (240)
T ss_pred ---HHHHHHHHHHHcCCCcEEEEEeCCcc
Confidence 78899999999999999999987653
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. |
| >PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A | Back alignment and domain information |
|---|
Probab=99.54 E-value=5.5e-15 Score=120.52 Aligned_cols=87 Identities=31% Similarity=0.591 Sum_probs=71.7
Q ss_pred EEEEcCccCccccc-------CCCcEEEEEeCCHHHHHHHHHc------CCeEEEeecCCCCCCCCCccEEEeh-hhhhh
Q 016157 126 VLDAGCGNGKYLGL-------NPDCFFVGCDISPSLIKICVDR------GHEVLVADAVNLPYRSDFGDAAISI-AVLHH 191 (394)
Q Consensus 126 VLDvGCG~G~~l~~-------~~~~~v~gvD~S~~~l~~a~~~------~i~~~~~D~~~lp~~~~~fD~Vi~~-~vl~h 191 (394)
|||+|||+|..+.. .+...++|+|+|+.|++.++++ .++++++|+.++++.+++||+|++. .+++|
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~~ 80 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLHH 80 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEcCCccCC
Confidence 79999999997532 2347999999999999999987 4699999999999888999999995 55999
Q ss_pred cCChhHHHHHHHHHHhccccCc
Q 016157 192 LSTESRRKKAIEELVRVVKKGS 213 (394)
Q Consensus 192 l~~~~~~~~~L~ei~r~LkpGG 213 (394)
+.+.+ ...+++++.++|||||
T Consensus 81 ~~~~~-~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 81 LSPEE-LEALLRRIARLLRPGG 101 (101)
T ss_dssp SSHHH-HHHHHHHHHHTEEEEE
T ss_pred CCHHH-HHHHHHHHHHHhCCCC
Confidence 87655 8999999999999998
|
|
| >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.8e-14 Score=140.37 Aligned_cols=107 Identities=24% Similarity=0.319 Sum_probs=85.4
Q ss_pred HHHHHHHcCCCCCCEEEEEcCccCccccc---CCCcEEEEEeCCHHHHHHHHH--------cCCeEEEeecCCCCCCCCC
Q 016157 111 PKVATFLNSLPSGSLVLDAGCGNGKYLGL---NPDCFFVGCDISPSLIKICVD--------RGHEVLVADAVNLPYRSDF 179 (394)
Q Consensus 111 ~~l~~~l~~l~~g~~VLDvGCG~G~~l~~---~~~~~v~gvD~S~~~l~~a~~--------~~i~~~~~D~~~lp~~~~~ 179 (394)
..+...+..+ +|.+|||||||+|.++.. .....|+|+|+|+.|+..++. .++.++.+|+.++|+ ++.
T Consensus 112 ~~l~~~l~~l-~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~-~~~ 189 (322)
T PRK15068 112 DRVLPHLSPL-KGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA-LKA 189 (322)
T ss_pred HHHHHhhCCC-CCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-cCC
Confidence 3344444433 568999999999997532 222369999999998865332 157899999999998 789
Q ss_pred ccEEEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCc
Q 016157 180 GDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAV 222 (394)
Q Consensus 180 fD~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~ 222 (394)
||+|+|..+++|+.+ +..+|++++++|||||.+++.++..
T Consensus 190 FD~V~s~~vl~H~~d---p~~~L~~l~~~LkpGG~lvl~~~~i 229 (322)
T PRK15068 190 FDTVFSMGVLYHRRS---PLDHLKQLKDQLVPGGELVLETLVI 229 (322)
T ss_pred cCEEEECChhhccCC---HHHHHHHHHHhcCCCcEEEEEEEEe
Confidence 999999999999988 7899999999999999999987543
|
|
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.8e-14 Score=136.94 Aligned_cols=102 Identities=25% Similarity=0.359 Sum_probs=88.3
Q ss_pred cCCCCCCEEEEEcCccCcccc-----cCCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeecCCCCCCCCCccEEEe
Q 016157 118 NSLPSGSLVLDAGCGNGKYLG-----LNPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFGDAAIS 185 (394)
Q Consensus 118 ~~l~~g~~VLDvGCG~G~~l~-----~~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~lp~~~~~fD~Vi~ 185 (394)
..+.++.+|||+|||+|..+. ..+..+|+|+|+++.|++.|+++ +++++.+|+.++++++++||+|++
T Consensus 73 ~~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~ 152 (272)
T PRK11873 73 AELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIIS 152 (272)
T ss_pred ccCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEE
Confidence 346789999999999998532 24556899999999999999875 568899999999988889999999
Q ss_pred hhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCc
Q 016157 186 IAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAV 222 (394)
Q Consensus 186 ~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~ 222 (394)
..+++|+++ ...+++++.++|||||+|++..+..
T Consensus 153 ~~v~~~~~d---~~~~l~~~~r~LkpGG~l~i~~~~~ 186 (272)
T PRK11873 153 NCVINLSPD---KERVFKEAFRVLKPGGRFAISDVVL 186 (272)
T ss_pred cCcccCCCC---HHHHHHHHHHHcCCCcEEEEEEeec
Confidence 999999987 6789999999999999999987653
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.4e-14 Score=146.90 Aligned_cols=101 Identities=30% Similarity=0.403 Sum_probs=88.5
Q ss_pred CCCCCEEEEEcCccCcccc---cCCCcEEEEEeCCHHHHHHHHHc------CCeEEEeecCCCCCCCCCccEEEehhhhh
Q 016157 120 LPSGSLVLDAGCGNGKYLG---LNPDCFFVGCDISPSLIKICVDR------GHEVLVADAVNLPYRSDFGDAAISIAVLH 190 (394)
Q Consensus 120 l~~g~~VLDvGCG~G~~l~---~~~~~~v~gvD~S~~~l~~a~~~------~i~~~~~D~~~lp~~~~~fD~Vi~~~vl~ 190 (394)
+.++.+|||||||+|..+. ...+..++|+|+|+.+++.|+++ .++++.+|+..+++++++||+|++..+++
T Consensus 264 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~s~~~l~ 343 (475)
T PLN02336 264 LKPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKTYPDNSFDVIYSRDTIL 343 (475)
T ss_pred CCCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCCCCCCCEEEEEECCccc
Confidence 4677899999999997532 23467999999999999999875 46899999999988888999999999999
Q ss_pred hcCChhHHHHHHHHHHhccccCcEEEEEEcCcc
Q 016157 191 HLSTESRRKKAIEELVRVVKKGSLVLITVWAVE 223 (394)
Q Consensus 191 hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~~ 223 (394)
|+++ +..+|+++.++|||||++++..+...
T Consensus 344 h~~d---~~~~l~~~~r~LkpgG~l~i~~~~~~ 373 (475)
T PLN02336 344 HIQD---KPALFRSFFKWLKPGGKVLISDYCRS 373 (475)
T ss_pred ccCC---HHHHHHHHHHHcCCCeEEEEEEeccC
Confidence 9998 78999999999999999999987654
|
|
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.8e-14 Score=137.29 Aligned_cols=107 Identities=21% Similarity=0.214 Sum_probs=85.2
Q ss_pred HHHHHHHcCCCCCCEEEEEcCccCccccc--CCCcEEEEEeCCHHHHHHHHHc------CCeEEEeecCCCCCCCCCccE
Q 016157 111 PKVATFLNSLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR------GHEVLVADAVNLPYRSDFGDA 182 (394)
Q Consensus 111 ~~l~~~l~~l~~g~~VLDvGCG~G~~l~~--~~~~~v~gvD~S~~~l~~a~~~------~i~~~~~D~~~lp~~~~~fD~ 182 (394)
+.+...+..++++ +|||+|||+|.++.. ..+.+|+|+|+|+.+++.++++ ++++...|+...++ +++||+
T Consensus 110 ~~~~~~~~~~~~~-~vLDlGcG~G~~~~~la~~g~~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~~-~~~fD~ 187 (287)
T PRK12335 110 SEVLEAVQTVKPG-KALDLGCGQGRNSLYLALLGFDVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSASI-QEEYDF 187 (287)
T ss_pred HHHHHHhhccCCC-CEEEeCCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCceEEEEechhcccc-cCCccE
Confidence 3444454444554 999999999997532 3578999999999999988765 46778888877665 678999
Q ss_pred EEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 016157 183 AISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (394)
Q Consensus 183 Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~ 220 (394)
|++..++||+... +...+++++.++|+|||++++..+
T Consensus 188 I~~~~vl~~l~~~-~~~~~l~~~~~~LkpgG~~l~v~~ 224 (287)
T PRK12335 188 ILSTVVLMFLNRE-RIPAIIKNMQEHTNPGGYNLIVCA 224 (287)
T ss_pred EEEcchhhhCCHH-HHHHHHHHHHHhcCCCcEEEEEEe
Confidence 9999999998753 378999999999999999877654
|
|
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=6.3e-14 Score=131.46 Aligned_cols=112 Identities=19% Similarity=0.161 Sum_probs=87.6
Q ss_pred chHHHHHHHcCCCCCCEEEEEcCccCccccc--------CCCcEEEEEeCCHHHHHHHHHc----CCeEEEeecCCCCCC
Q 016157 109 KWPKVATFLNSLPSGSLVLDAGCGNGKYLGL--------NPDCFFVGCDISPSLIKICVDR----GHEVLVADAVNLPYR 176 (394)
Q Consensus 109 ~~~~l~~~l~~l~~g~~VLDvGCG~G~~l~~--------~~~~~v~gvD~S~~~l~~a~~~----~i~~~~~D~~~lp~~ 176 (394)
.|..+........++.+|||||||+|.++.. .++.+++|+|+|+.|++.|+++ ++++...+...++..
T Consensus 47 ~~~~~~~~~l~~~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~ 126 (232)
T PRK06202 47 LYRRLLRPALSADRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDELVAE 126 (232)
T ss_pred HHHHHHHHhcCCCCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCCeEEEEeccccccc
Confidence 3444444443445678999999999986321 3456999999999999999886 577888888888877
Q ss_pred CCCccEEEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCcc
Q 016157 177 SDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVE 223 (394)
Q Consensus 177 ~~~fD~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~~ 223 (394)
+++||+|+++.++||+++++ ...+|+++.++++ |.+++..+...
T Consensus 127 ~~~fD~V~~~~~lhh~~d~~-~~~~l~~~~r~~~--~~~~i~dl~~~ 170 (232)
T PRK06202 127 GERFDVVTSNHFLHHLDDAE-VVRLLADSAALAR--RLVLHNDLIRS 170 (232)
T ss_pred CCCccEEEECCeeecCChHH-HHHHHHHHHHhcC--eeEEEeccccC
Confidence 78999999999999998754 5789999999998 56666665543
|
|
| >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.53 E-value=4.1e-15 Score=120.61 Aligned_cols=86 Identities=34% Similarity=0.588 Sum_probs=55.7
Q ss_pred EEEcCccCccccc----CCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeecCCCCC--CCCCccEEEehhhhhhcC
Q 016157 127 LDAGCGNGKYLGL----NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPY--RSDFGDAAISIAVLHHLS 193 (394)
Q Consensus 127 LDvGCG~G~~l~~----~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~lp~--~~~~fD~Vi~~~vl~hl~ 193 (394)
||||||+|.++.. .+..+++|+|+|+.|++.|+++ .......+..+... ..++||+|+++.++||++
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l~ 80 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHLE 80 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS--S
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhhh
Confidence 7999999998653 5788999999999999777766 12334444333321 125999999999999996
Q ss_pred ChhHHHHHHHHHHhccccCcEE
Q 016157 194 TESRRKKAIEELVRVVKKGSLV 215 (394)
Q Consensus 194 ~~~~~~~~L~ei~r~LkpGG~l 215 (394)
+ +..+|+.+.++|||||+|
T Consensus 81 ~---~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 81 D---IEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp ----HHHHHHHHTTT-TSS-EE
T ss_pred h---HHHHHHHHHHHcCCCCCC
Confidence 6 889999999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. |
| >KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.51 E-value=3.1e-14 Score=132.48 Aligned_cols=96 Identities=23% Similarity=0.317 Sum_probs=81.7
Q ss_pred CCEEEEEcCccCccccc--CCCcEEEEEeCCHHHHHHHHHc---------C----CeEEEeecCCCCCCCCCccEEEehh
Q 016157 123 GSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR---------G----HEVLVADAVNLPYRSDFGDAAISIA 187 (394)
Q Consensus 123 g~~VLDvGCG~G~~l~~--~~~~~v~gvD~S~~~l~~a~~~---------~----i~~~~~D~~~lp~~~~~fD~Vi~~~ 187 (394)
|.+|||+|||+|.+... .-+..|+|+|+++.|++.|+++ + +++...|++.+ .+.||+|+|..
T Consensus 90 g~~ilDvGCGgGLLSepLArlga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~---~~~fDaVvcse 166 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLGAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGL---TGKFDAVVCSE 166 (282)
T ss_pred CceEEEeccCccccchhhHhhCCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhc---ccccceeeeHH
Confidence 47899999999998753 4568999999999999999987 1 45566666665 35599999999
Q ss_pred hhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCccc
Q 016157 188 VLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQ 224 (394)
Q Consensus 188 vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~~~ 224 (394)
+++|+.+ +..++..+.++|||||+++|++.....
T Consensus 167 vleHV~d---p~~~l~~l~~~lkP~G~lfittinrt~ 200 (282)
T KOG1270|consen 167 VLEHVKD---PQEFLNCLSALLKPNGRLFITTINRTI 200 (282)
T ss_pred HHHHHhC---HHHHHHHHHHHhCCCCceEeeehhhhH
Confidence 9999999 899999999999999999999876543
|
|
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.5e-13 Score=128.28 Aligned_cols=132 Identities=26% Similarity=0.432 Sum_probs=103.9
Q ss_pred HHHHHHHHHHhhcccccccc-------ccchHH-HHHHHcCCCCCCEEEEEcCccCcccc----cCC-CcEEEEEeCCHH
Q 016157 87 EKKYVHRVYDAIAPHFSSTR-------FAKWPK-VATFLNSLPSGSLVLDAGCGNGKYLG----LNP-DCFFVGCDISPS 153 (394)
Q Consensus 87 ~~~~v~~~Yd~~a~~y~~~~-------~~~~~~-l~~~l~~l~~g~~VLDvGCG~G~~l~----~~~-~~~v~gvD~S~~ 153 (394)
.++.+.+.|+.++..|+... +..|.. +...+ ...++.+|||+|||+|.++. ..+ ..+++|+|+++.
T Consensus 9 ~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~ 87 (239)
T PRK00216 9 KQEKVAEMFDSIAPKYDLMNDLLSFGLHRVWRRKTIKWL-GVRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEG 87 (239)
T ss_pred chHHHHHHHHHhhhhHHHHHHHHhcCCcHHHHHHHHHHh-CCCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHH
Confidence 35677888999988887311 222322 22333 24467899999999999753 233 579999999999
Q ss_pred HHHHHHHc--------CCeEEEeecCCCCCCCCCccEEEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCc
Q 016157 154 LIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAV 222 (394)
Q Consensus 154 ~l~~a~~~--------~i~~~~~D~~~lp~~~~~fD~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~ 222 (394)
+++.++++ .+.++.+|+.++++..+.||+|++..+++|+.+ +..+|+++.++|+|||.+++..+..
T Consensus 88 ~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~I~~~~~l~~~~~---~~~~l~~~~~~L~~gG~li~~~~~~ 161 (239)
T PRK00216 88 MLAVGREKLRDLGLSGNVEFVQGDAEALPFPDNSFDAVTIAFGLRNVPD---IDKALREMYRVLKPGGRLVILEFSK 161 (239)
T ss_pred HHHHHHHhhcccccccCeEEEecccccCCCCCCCccEEEEecccccCCC---HHHHHHHHHHhccCCcEEEEEEecC
Confidence 99999875 368899999988877789999999999999988 7899999999999999999887654
|
|
| >TIGR00452 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.50 E-value=8.5e-14 Score=135.99 Aligned_cols=98 Identities=17% Similarity=0.158 Sum_probs=80.0
Q ss_pred CCCCEEEEEcCccCccccc--CCC-cEEEEEeCCHHHHHHHHH---c-----CCeEEEeecCCCCCCCCCccEEEehhhh
Q 016157 121 PSGSLVLDAGCGNGKYLGL--NPD-CFFVGCDISPSLIKICVD---R-----GHEVLVADAVNLPYRSDFGDAAISIAVL 189 (394)
Q Consensus 121 ~~g~~VLDvGCG~G~~l~~--~~~-~~v~gvD~S~~~l~~a~~---~-----~i~~~~~D~~~lp~~~~~fD~Vi~~~vl 189 (394)
.+|.+|||||||+|.++.. ..+ ..|+|+|+|+.|+..++. . .+.+..+++.++|.. .+||+|++++++
T Consensus 120 ~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~-~~FD~V~s~gvL 198 (314)
T TIGR00452 120 LKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHEL-YAFDTVFSMGVL 198 (314)
T ss_pred CCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCC-CCcCEEEEcchh
Confidence 4578999999999997432 223 379999999999875432 1 457788888888864 589999999999
Q ss_pred hhcCChhHHHHHHHHHHhccccCcEEEEEEcCc
Q 016157 190 HHLSTESRRKKAIEELVRVVKKGSLVLITVWAV 222 (394)
Q Consensus 190 ~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~ 222 (394)
+|+.+ +..+|++++++|||||.|++.++..
T Consensus 199 ~H~~d---p~~~L~el~r~LkpGG~Lvletl~i 228 (314)
T TIGR00452 199 YHRKS---PLEHLKQLKHQLVIKGELVLETLVI 228 (314)
T ss_pred hccCC---HHHHHHHHHHhcCCCCEEEEEEEEe
Confidence 99988 7899999999999999999987543
|
Known examples to date are restricted to the proteobacteria. |
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.9e-13 Score=126.23 Aligned_cols=128 Identities=28% Similarity=0.460 Sum_probs=99.4
Q ss_pred HHHHHhhcccccccc-------ccchHHHHHHHcCCCCCCEEEEEcCccCcccc----cCCC-cEEEEEeCCHHHHHHHH
Q 016157 92 HRVYDAIAPHFSSTR-------FAKWPKVATFLNSLPSGSLVLDAGCGNGKYLG----LNPD-CFFVGCDISPSLIKICV 159 (394)
Q Consensus 92 ~~~Yd~~a~~y~~~~-------~~~~~~l~~~l~~l~~g~~VLDvGCG~G~~l~----~~~~-~~v~gvD~S~~~l~~a~ 159 (394)
+++|+.++.+|+... ...|...........++.+|||+|||+|.++. ..+. ..++|+|+++.+++.++
T Consensus 2 ~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~ 81 (223)
T TIGR01934 2 QEMFDRIAPKYDLLNDLLSFGLHRLWRRRAVKLIGVFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAK 81 (223)
T ss_pred HhHHHHHHhhhhHHHHHHhcccHHHHHHHHHHHhccCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHH
Confidence 456777777776532 23333322222234477899999999999753 2333 68999999999999998
Q ss_pred Hc-----CCeEEEeecCCCCCCCCCccEEEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCc
Q 016157 160 DR-----GHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAV 222 (394)
Q Consensus 160 ~~-----~i~~~~~D~~~lp~~~~~fD~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~ 222 (394)
++ ++.++.+|+.++++..+.||+|++..+++|+.+ +..+++++.+.|+|||++++..+..
T Consensus 82 ~~~~~~~~i~~~~~d~~~~~~~~~~~D~i~~~~~~~~~~~---~~~~l~~~~~~L~~gG~l~~~~~~~ 146 (223)
T TIGR01934 82 KKSELPLNIEFIQADAEALPFEDNSFDAVTIAFGLRNVTD---IQKALREMYRVLKPGGRLVILEFSK 146 (223)
T ss_pred HHhccCCCceEEecchhcCCCCCCcEEEEEEeeeeCCccc---HHHHHHHHHHHcCCCcEEEEEEecC
Confidence 75 478999999998887789999999999999988 7899999999999999999987643
|
Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. |
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=99.49 E-value=6.2e-14 Score=134.24 Aligned_cols=97 Identities=15% Similarity=0.189 Sum_probs=82.1
Q ss_pred CCCCEEEEEcCccCcc-------c-ccC-----CCcEEEEEeCCHHHHHHHHHc--------------------------
Q 016157 121 PSGSLVLDAGCGNGKY-------L-GLN-----PDCFFVGCDISPSLIKICVDR-------------------------- 161 (394)
Q Consensus 121 ~~g~~VLDvGCG~G~~-------l-~~~-----~~~~v~gvD~S~~~l~~a~~~-------------------------- 161 (394)
.++.+|||+|||+|.- + ... ++..|+|+|+|+.|++.|++.
T Consensus 98 ~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~ 177 (264)
T smart00138 98 GRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKY 177 (264)
T ss_pred CCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeE
Confidence 3457999999999962 1 111 257999999999999999873
Q ss_pred --------CCeEEEeecCCCCCCCCCccEEEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEE
Q 016157 162 --------GHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLIT 218 (394)
Q Consensus 162 --------~i~~~~~D~~~lp~~~~~fD~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~ 218 (394)
.+.|.++|+.+.+++.+.||+|+|..+++|++.+. +.+++++++++|+|||.+++.
T Consensus 178 ~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~-~~~~l~~l~~~L~pGG~L~lg 241 (264)
T smart00138 178 RVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPT-QRKLLNRFAEALKPGGYLFLG 241 (264)
T ss_pred EEChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHH-HHHHHHHHHHHhCCCeEEEEE
Confidence 46889999999887788999999999999997644 689999999999999999986
|
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >COG4106 Tam Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.47 E-value=9.6e-14 Score=125.67 Aligned_cols=119 Identities=22% Similarity=0.258 Sum_probs=99.3
Q ss_pred cccccccchHHHHHHHcCCCCCCEEEEEcCccCccc----ccCCCcEEEEEeCCHHHHHHHHHc--CCeEEEeecCCCCC
Q 016157 102 FSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGKYL----GLNPDCFFVGCDISPSLIKICVDR--GHEVLVADAVNLPY 175 (394)
Q Consensus 102 y~~~~~~~~~~l~~~l~~l~~g~~VLDvGCG~G~~l----~~~~~~~v~gvD~S~~~l~~a~~~--~i~~~~~D~~~lp~ 175 (394)
|...|.++..++...+... +..+|.|+|||+|..+ +..|+..++|+|-|+.|++.|+++ +.+|..+|+.++..
T Consensus 11 F~~eRtRPa~dLla~Vp~~-~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rlp~~~f~~aDl~~w~p 89 (257)
T COG4106 11 FEDERTRPARDLLARVPLE-RPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRLPDATFEEADLRTWKP 89 (257)
T ss_pred HHHhccCcHHHHHhhCCcc-ccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhCCCCceecccHhhcCC
Confidence 4556667776666655433 3458999999999864 348999999999999999999988 78999999999853
Q ss_pred CCCCccEEEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCccch
Q 016157 176 RSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQE 225 (394)
Q Consensus 176 ~~~~fD~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~~~~ 225 (394)
...+|+++++++++++++ -.+.|..+...|.|||.+.+..+...++
T Consensus 90 -~~~~dllfaNAvlqWlpd---H~~ll~rL~~~L~Pgg~LAVQmPdN~de 135 (257)
T COG4106 90 -EQPTDLLFANAVLQWLPD---HPELLPRLVSQLAPGGVLAVQMPDNLDE 135 (257)
T ss_pred -CCccchhhhhhhhhhccc---cHHHHHHHHHhhCCCceEEEECCCccCc
Confidence 567899999999999999 6789999999999999999998765444
|
|
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=3.4e-13 Score=125.52 Aligned_cols=100 Identities=32% Similarity=0.482 Sum_probs=88.1
Q ss_pred CCCCCCEEEEEcCccCccccc-----CCCcEEEEEeCCHHHHHHHHHc------CCeEEEeecCCCCCCCCCccEEEehh
Q 016157 119 SLPSGSLVLDAGCGNGKYLGL-----NPDCFFVGCDISPSLIKICVDR------GHEVLVADAVNLPYRSDFGDAAISIA 187 (394)
Q Consensus 119 ~l~~g~~VLDvGCG~G~~l~~-----~~~~~v~gvD~S~~~l~~a~~~------~i~~~~~D~~~lp~~~~~fD~Vi~~~ 187 (394)
.+.++.+|||+|||+|.++.. .+...++|+|+++.+++.++++ ++.+..+|+..+++.++.||+|++..
T Consensus 16 ~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~ 95 (241)
T PRK08317 16 AVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLPFPDGSFDAVRSDR 95 (241)
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCCCCCCCceEEEEec
Confidence 466788999999999997532 2567999999999999999876 47889999998888889999999999
Q ss_pred hhhhcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 016157 188 VLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 221 (394)
Q Consensus 188 vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~ 221 (394)
+++|+.+ +..+++++.++|||||.+++..+.
T Consensus 96 ~~~~~~~---~~~~l~~~~~~L~~gG~l~~~~~~ 126 (241)
T PRK08317 96 VLQHLED---PARALAEIARVLRPGGRVVVLDTD 126 (241)
T ss_pred hhhccCC---HHHHHHHHHHHhcCCcEEEEEecC
Confidence 9999998 788999999999999999998754
|
|
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.5e-13 Score=141.90 Aligned_cols=107 Identities=25% Similarity=0.387 Sum_probs=88.3
Q ss_pred HcCCCCCCEEEEEcCccCcccc----cCCCcEEEEEeCCHHHHHHHHHc------CCeEEEeecCCCC--CCCCCccEEE
Q 016157 117 LNSLPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR------GHEVLVADAVNLP--YRSDFGDAAI 184 (394)
Q Consensus 117 l~~l~~g~~VLDvGCG~G~~l~----~~~~~~v~gvD~S~~~l~~a~~~------~i~~~~~D~~~lp--~~~~~fD~Vi 184 (394)
+....++.+|||||||+|.++. ..++..++|+|+|+.|++.|+++ ++.++++|+.++| +++++||+|+
T Consensus 413 i~d~~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVV 492 (677)
T PRK06922 413 ILDYIKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIV 492 (677)
T ss_pred HhhhcCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEE
Confidence 3344567899999999998642 36788999999999999999875 3577889999887 7789999999
Q ss_pred ehhhhhhcCC----------hhHHHHHHHHHHhccccCcEEEEEEcCcc
Q 016157 185 SIAVLHHLST----------ESRRKKAIEELVRVVKKGSLVLITVWAVE 223 (394)
Q Consensus 185 ~~~vl~hl~~----------~~~~~~~L~ei~r~LkpGG~lli~~~~~~ 223 (394)
++.++||+.. .+.+..+|+++.++|||||++++......
T Consensus 493 sn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~v~~ 541 (677)
T PRK06922 493 YSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDGIMT 541 (677)
T ss_pred EchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeCccC
Confidence 9999998631 23478999999999999999999875443
|
|
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.46 E-value=5.6e-13 Score=124.07 Aligned_cols=132 Identities=19% Similarity=0.224 Sum_probs=98.0
Q ss_pred HHHHHHHHHhhccccccccccchHHHHHHHc--CCCCCCEEEEEcCccCcccc--cCCCcEEEEEeCCHHHHHHHHH-c-
Q 016157 88 KKYVHRVYDAIAPHFSSTRFAKWPKVATFLN--SLPSGSLVLDAGCGNGKYLG--LNPDCFFVGCDISPSLIKICVD-R- 161 (394)
Q Consensus 88 ~~~v~~~Yd~~a~~y~~~~~~~~~~l~~~l~--~l~~g~~VLDvGCG~G~~l~--~~~~~~v~gvD~S~~~l~~a~~-~- 161 (394)
.+.+.+.|+.-...|.. ..+-+.+..++. .++++.+|||+|||.|..+. +..|..|+|+|+|+.+++.+.+ +
T Consensus 3 ~~~Wd~rw~~~~~~~~~--~~p~~~L~~~~~~~~~~~~~rvL~~gCG~G~da~~LA~~G~~V~avD~s~~Ai~~~~~~~~ 80 (218)
T PRK13255 3 PDFWHEKWAENQIGFHQ--EEVNPLLQKYWPALALPAGSRVLVPLCGKSLDMLWLAEQGHEVLGVELSELAVEQFFAENG 80 (218)
T ss_pred HhHHHHHHcCCCCCCCC--CCCCHHHHHHHHhhCCCCCCeEEEeCCCChHhHHHHHhCCCeEEEEccCHHHHHHHHHHcC
Confidence 34566777654333432 234455556554 34567899999999999754 3678899999999999998643 2
Q ss_pred -----------------CCeEEEeecCCCCCC-CCCccEEEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCc
Q 016157 162 -----------------GHEVLVADAVNLPYR-SDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAV 222 (394)
Q Consensus 162 -----------------~i~~~~~D~~~lp~~-~~~fD~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~ 222 (394)
.+++.++|+.+++.. ...||+|+...+++|++... +..+++.+.++|||||++++.+...
T Consensus 81 l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~~~fd~v~D~~~~~~l~~~~-R~~~~~~l~~lL~pgG~~~l~~~~~ 158 (218)
T PRK13255 81 LTPQTRQSGEFEHYQAGEITIYCGDFFALTAADLADVDAVYDRAALIALPEEM-RERYVQQLAALLPAGCRGLLVTLDY 158 (218)
T ss_pred CCccccccccccccccCceEEEECcccCCCcccCCCeeEEEehHhHhhCCHHH-HHHHHHHHHHHcCCCCeEEEEEEEe
Confidence 356789999988643 25899999999999997654 7999999999999999866655443
|
|
| >TIGR03438 probable methyltransferase | Back alignment and domain information |
|---|
Probab=99.45 E-value=9.5e-13 Score=128.41 Aligned_cols=108 Identities=16% Similarity=0.170 Sum_probs=80.4
Q ss_pred HHcCCCCCCEEEEEcCccCcccc----cCC-CcEEEEEeCCHHHHHHHHHc------C--CeEEEeecCC-CCCCCC---
Q 016157 116 FLNSLPSGSLVLDAGCGNGKYLG----LNP-DCFFVGCDISPSLIKICVDR------G--HEVLVADAVN-LPYRSD--- 178 (394)
Q Consensus 116 ~l~~l~~g~~VLDvGCG~G~~l~----~~~-~~~v~gvD~S~~~l~~a~~~------~--i~~~~~D~~~-lp~~~~--- 178 (394)
+...++++.+|||+|||+|..+. ..+ +..|+|+|+|+.|++.|+++ + +.++++|+.+ +++...
T Consensus 57 ia~~~~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~ 136 (301)
T TIGR03438 57 IAAATGAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAA 136 (301)
T ss_pred HHHhhCCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhccccc
Confidence 33445677899999999999643 233 67999999999999998775 2 3567899876 344332
Q ss_pred -CccEEEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCccc
Q 016157 179 -FGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQ 224 (394)
Q Consensus 179 -~fD~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~~~ 224 (394)
...++++...++|++..+ ...+|++++++|+|||.|+|.+-...+
T Consensus 137 ~~~~~~~~gs~~~~~~~~e-~~~~L~~i~~~L~pgG~~lig~d~~~~ 182 (301)
T TIGR03438 137 GRRLGFFPGSTIGNFTPEE-AVAFLRRIRQLLGPGGGLLIGVDLVKD 182 (301)
T ss_pred CCeEEEEecccccCCCHHH-HHHHHHHHHHhcCCCCEEEEeccCCCC
Confidence 233455557888887544 789999999999999999998754433
|
This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases |
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=99.45 E-value=3.6e-13 Score=125.28 Aligned_cols=93 Identities=26% Similarity=0.460 Sum_probs=81.0
Q ss_pred EEEEEcCccCcccc----cCCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeecCCCCCCCCCccEEEehhhhhhc
Q 016157 125 LVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISIAVLHHL 192 (394)
Q Consensus 125 ~VLDvGCG~G~~l~----~~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~lp~~~~~fD~Vi~~~vl~hl 192 (394)
+|||||||+|.++. ..++..++|+|+|+.+++.|+++ .++++.+|+...|++ ++||+|+++.+++|+
T Consensus 2 ~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~-~~fD~I~~~~~l~~~ 80 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFP-DTYDLVFGFEVIHHI 80 (224)
T ss_pred eEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCC-CCCCEeehHHHHHhC
Confidence 79999999999643 24568999999999999999875 358899999776664 589999999999999
Q ss_pred CChhHHHHHHHHHHhccccCcEEEEEEcC
Q 016157 193 STESRRKKAIEELVRVVKKGSLVLITVWA 221 (394)
Q Consensus 193 ~~~~~~~~~L~ei~r~LkpGG~lli~~~~ 221 (394)
.+ +..+|+++.++|||||++++..+.
T Consensus 81 ~~---~~~~l~~~~~~LkpgG~l~i~~~~ 106 (224)
T smart00828 81 KD---KMDLFSNISRHLKDGGHLVLADFI 106 (224)
T ss_pred CC---HHHHHHHHHHHcCCCCEEEEEEcc
Confidence 88 789999999999999999998864
|
|
| >PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB | Back alignment and domain information |
|---|
Probab=99.44 E-value=4.3e-13 Score=121.77 Aligned_cols=109 Identities=25% Similarity=0.302 Sum_probs=83.8
Q ss_pred hHHHHHHHcCCCCCCEEEEEcCccCcccc--cCCCcEEEEEeCCHHHHHHHHHc------CCeEEEeecCCCCCCCCCcc
Q 016157 110 WPKVATFLNSLPSGSLVLDAGCGNGKYLG--LNPDCFFVGCDISPSLIKICVDR------GHEVLVADAVNLPYRSDFGD 181 (394)
Q Consensus 110 ~~~l~~~l~~l~~g~~VLDvGCG~G~~l~--~~~~~~v~gvD~S~~~l~~a~~~------~i~~~~~D~~~lp~~~~~fD 181 (394)
.+.+...+..+++ .++||+|||.|+.+. +..|..|+++|+|+..++.+++. .++....|+.+..++ +.||
T Consensus 19 hs~v~~a~~~~~~-g~~LDlgcG~GRNalyLA~~G~~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~~~-~~yD 96 (192)
T PF03848_consen 19 HSEVLEAVPLLKP-GKALDLGCGEGRNALYLASQGFDVTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDFDFP-EEYD 96 (192)
T ss_dssp -HHHHHHCTTS-S-SEEEEES-TTSHHHHHHHHTT-EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS-T-TTEE
T ss_pred cHHHHHHHhhcCC-CcEEEcCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHHHhhcCceeEEEEecchhcccc-CCcC
Confidence 4556666666665 599999999999754 36789999999999988776543 467789999888774 6899
Q ss_pred EEEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 016157 182 AAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 221 (394)
Q Consensus 182 ~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~ 221 (394)
+|++..|++|+..+. +..+++.|...++|||++++.++.
T Consensus 97 ~I~st~v~~fL~~~~-~~~i~~~m~~~~~pGG~~li~~~~ 135 (192)
T PF03848_consen 97 FIVSTVVFMFLQREL-RPQIIENMKAATKPGGYNLIVTFM 135 (192)
T ss_dssp EEEEESSGGGS-GGG-HHHHHHHHHHTEEEEEEEEEEEEB
T ss_pred EEEEEEEeccCCHHH-HHHHHHHHHhhcCCcEEEEEEEec
Confidence 999999999998654 789999999999999999997653
|
When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A. |
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.44 E-value=8e-13 Score=126.05 Aligned_cols=102 Identities=22% Similarity=0.326 Sum_probs=87.4
Q ss_pred CCCCCCEEEEEcCccCccccc---CCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeecCCCCCCCCCccEEEehh
Q 016157 119 SLPSGSLVLDAGCGNGKYLGL---NPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISIA 187 (394)
Q Consensus 119 ~l~~g~~VLDvGCG~G~~l~~---~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~lp~~~~~fD~Vi~~~ 187 (394)
.++||.+|||||||.|.++.+ .-+++|+|+++|+++.+.++++ +++++..|..++. +.||-|+++.
T Consensus 69 ~L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~---e~fDrIvSvg 145 (283)
T COG2230 69 GLKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFE---EPFDRIVSVG 145 (283)
T ss_pred CCCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccc---cccceeeehh
Confidence 578999999999999997542 3478999999999999999885 4668888877764 4599999999
Q ss_pred hhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCccc
Q 016157 188 VLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQ 224 (394)
Q Consensus 188 vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~~~ 224 (394)
+++|+.... ...+++.+.++|+|||++++-+.....
T Consensus 146 mfEhvg~~~-~~~ff~~~~~~L~~~G~~llh~I~~~~ 181 (283)
T COG2230 146 MFEHVGKEN-YDDFFKKVYALLKPGGRMLLHSITGPD 181 (283)
T ss_pred hHHHhCccc-HHHHHHHHHhhcCCCceEEEEEecCCC
Confidence 999998744 789999999999999999999876554
|
|
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.6e-13 Score=131.73 Aligned_cols=103 Identities=24% Similarity=0.374 Sum_probs=77.3
Q ss_pred CCCCCCEEEEEcCccCccccc---CCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeecCCCCCCCCCccEEEehh
Q 016157 119 SLPSGSLVLDAGCGNGKYLGL---NPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISIA 187 (394)
Q Consensus 119 ~l~~g~~VLDvGCG~G~~l~~---~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~lp~~~~~fD~Vi~~~ 187 (394)
.++||.+|||||||.|.++.. ..++.|+|+.+|++..+.|+++ .+++..+|..+++. +||.|+++.
T Consensus 59 ~l~~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~~---~fD~IvSi~ 135 (273)
T PF02353_consen 59 GLKPGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLPG---KFDRIVSIE 135 (273)
T ss_dssp T--TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG------S-SEEEEES
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccCC---CCCEEEEEe
Confidence 478999999999999997542 2378999999999999999876 36789999888754 899999999
Q ss_pred hhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCccch
Q 016157 188 VLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQE 225 (394)
Q Consensus 188 vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~~~~ 225 (394)
+++|+.... ...+++.+.++|||||++++..+.....
T Consensus 136 ~~Ehvg~~~-~~~~f~~~~~~LkpgG~~~lq~i~~~~~ 172 (273)
T PF02353_consen 136 MFEHVGRKN-YPAFFRKISRLLKPGGRLVLQTITHRDP 172 (273)
T ss_dssp EGGGTCGGG-HHHHHHHHHHHSETTEEEEEEEEEE--H
T ss_pred chhhcChhH-HHHHHHHHHHhcCCCcEEEEEecccccc
Confidence 999997543 7899999999999999999988776543
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.6e-12 Score=118.24 Aligned_cols=96 Identities=22% Similarity=0.154 Sum_probs=80.8
Q ss_pred cCCCCCCEEEEEcCccCcccc----cCCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeecCCCCCCCCCccEEEeh
Q 016157 118 NSLPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFGDAAISI 186 (394)
Q Consensus 118 ~~l~~g~~VLDvGCG~G~~l~----~~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~lp~~~~~fD~Vi~~ 186 (394)
..++++.+|||+|||+|..+. ..++.+|+|+|+++.|++.|+++ +++++.+|+.+++. .++||+|++.
T Consensus 41 ~~l~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~-~~~fDlV~~~ 119 (187)
T PRK00107 41 PYLPGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQ-EEKFDVVTSR 119 (187)
T ss_pred hhcCCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCC-CCCccEEEEc
Confidence 456678999999999998532 35778999999999999999875 47899999999877 7799999997
Q ss_pred hhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 016157 187 AVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 221 (394)
Q Consensus 187 ~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~ 221 (394)
. +.+ +..+++++.++|||||++++....
T Consensus 120 ~----~~~---~~~~l~~~~~~LkpGG~lv~~~~~ 147 (187)
T PRK00107 120 A----VAS---LSDLVELCLPLLKPGGRFLALKGR 147 (187)
T ss_pred c----ccC---HHHHHHHHHHhcCCCeEEEEEeCC
Confidence 5 233 678999999999999999998644
|
|
| >KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.44 E-value=7.1e-13 Score=120.29 Aligned_cols=103 Identities=27% Similarity=0.536 Sum_probs=85.4
Q ss_pred CCEEEEEcCccCccccc--CCCcEEEEEeCCHHHHHHHHHcCC--eEEEeecCC-CCCCCCCccEEEehhhhhhcCC---
Q 016157 123 GSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDRGH--EVLVADAVN-LPYRSDFGDAAISIAVLHHLST--- 194 (394)
Q Consensus 123 g~~VLDvGCG~G~~l~~--~~~~~v~gvD~S~~~l~~a~~~~i--~~~~~D~~~-lp~~~~~fD~Vi~~~vl~hl~~--- 194 (394)
...|||||||+|.-... .++...+|+|+|+.|++.|.++.+ .++.+|+-. +||+.++||.+|++..++++-+
T Consensus 51 ~~~iLDIGCGsGLSg~vL~~~Gh~wiGvDiSpsML~~a~~~e~egdlil~DMG~GlpfrpGtFDg~ISISAvQWLcnA~~ 130 (270)
T KOG1541|consen 51 SGLILDIGCGSGLSGSVLSDSGHQWIGVDISPSMLEQAVERELEGDLILCDMGEGLPFRPGTFDGVISISAVQWLCNADK 130 (270)
T ss_pred CcEEEEeccCCCcchheeccCCceEEeecCCHHHHHHHHHhhhhcCeeeeecCCCCCCCCCccceEEEeeeeeeecccCc
Confidence 57899999999986543 567899999999999999998743 578888855 8999999999999988877633
Q ss_pred -----hhHHHHHHHHHHhccccCcEEEEEEcCccch
Q 016157 195 -----ESRRKKAIEELVRVVKKGSLVLITVWAVEQE 225 (394)
Q Consensus 195 -----~~~~~~~L~ei~r~LkpGG~lli~~~~~~~~ 225 (394)
..|+..++..++.+|++|++.++..+...+.
T Consensus 131 s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYpen~~ 166 (270)
T KOG1541|consen 131 SLHVPKKRLLRFFGTLYSCLKRGARAVLQFYPENEA 166 (270)
T ss_pred cccChHHHHHHHhhhhhhhhccCceeEEEecccchH
Confidence 2346778889999999999999998865543
|
|
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.43 E-value=9.4e-13 Score=122.31 Aligned_cols=97 Identities=22% Similarity=0.296 Sum_probs=81.2
Q ss_pred CCCEEEEEcCccCccccc--CCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeecCCCCCC-CCCccEEEehhhhhh
Q 016157 122 SGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYR-SDFGDAAISIAVLHH 191 (394)
Q Consensus 122 ~g~~VLDvGCG~G~~l~~--~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~lp~~-~~~fD~Vi~~~vl~h 191 (394)
.+.+|||+|||+|.++.. ..+..++|+|+++.+++.++++ ++.+..+|+.+++.. .++||+|++..+++|
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l~~ 124 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLGANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVLEH 124 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhHHHh
Confidence 467999999999997532 2345799999999999998875 367778888777644 378999999999999
Q ss_pred cCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 016157 192 LSTESRRKKAIEELVRVVKKGSLVLITVWA 221 (394)
Q Consensus 192 l~~~~~~~~~L~ei~r~LkpGG~lli~~~~ 221 (394)
+.+ +..+|+++.++|+|||.+++..+.
T Consensus 125 ~~~---~~~~l~~~~~~L~~gG~l~i~~~~ 151 (224)
T TIGR01983 125 VPD---PQAFIRACAQLLKPGGILFFSTIN 151 (224)
T ss_pred CCC---HHHHHHHHHHhcCCCcEEEEEecC
Confidence 988 788999999999999999988764
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. |
| >TIGR02081 metW methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Probab=99.42 E-value=7.5e-13 Score=120.85 Aligned_cols=101 Identities=29% Similarity=0.491 Sum_probs=82.2
Q ss_pred HHHHHcCCCCCCEEEEEcCccCccccc---CCCcEEEEEeCCHHHHHHHHHcCCeEEEeecCC-C-CCCCCCccEEEehh
Q 016157 113 VATFLNSLPSGSLVLDAGCGNGKYLGL---NPDCFFVGCDISPSLIKICVDRGHEVLVADAVN-L-PYRSDFGDAAISIA 187 (394)
Q Consensus 113 l~~~l~~l~~g~~VLDvGCG~G~~l~~---~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~-l-p~~~~~fD~Vi~~~ 187 (394)
+..+...++++.+|||||||+|.++.. ..+..++|+|+|+.+++.|++++++++++|+.+ + ++.+++||+|+++.
T Consensus 4 ~~~i~~~i~~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~~~~~~~~~d~~~~l~~~~~~sfD~Vi~~~ 83 (194)
T TIGR02081 4 LESILNLIPPGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVARGVNVIQGDLDEGLEAFPDKSFDYVILSQ 83 (194)
T ss_pred HHHHHHhcCCCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHHcCCeEEEEEhhhcccccCCCCcCEEEEhh
Confidence 444455567888999999999997542 345678999999999999998899999999976 4 36778999999999
Q ss_pred hhhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 016157 188 VLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 188 vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~ 219 (394)
++||+.+ +..+|+++.|+++ .+++.+
T Consensus 84 ~l~~~~d---~~~~l~e~~r~~~---~~ii~~ 109 (194)
T TIGR02081 84 TLQATRN---PEEILDEMLRVGR---HAIVSF 109 (194)
T ss_pred HhHcCcC---HHHHHHHHHHhCC---eEEEEc
Confidence 9999988 7889999988765 445554
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. |
| >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.42 E-value=8.8e-13 Score=122.54 Aligned_cols=101 Identities=26% Similarity=0.357 Sum_probs=80.7
Q ss_pred HHHHHcC-CCCCCEEEEEcCccCccccc--CCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeecCCCCCCCCCcc
Q 016157 113 VATFLNS-LPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGD 181 (394)
Q Consensus 113 l~~~l~~-l~~g~~VLDvGCG~G~~l~~--~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~lp~~~~~fD 181 (394)
+...+.. ..++.+|||+|||+|.++.. ..+..++|+|+|+.|+..|+++ ++.+.++|+..++ ++||
T Consensus 45 ~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~fD 121 (219)
T TIGR02021 45 LLDWLPKDPLKGKRVLDAGCGTGLLSIELAKRGAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLC---GEFD 121 (219)
T ss_pred HHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCC---CCcC
Confidence 4444443 45688999999999997542 3456999999999999999875 4678999998875 7899
Q ss_pred EEEehhhhhhcCChhHHHHHHHHHHhccccCcEEEE
Q 016157 182 AAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLI 217 (394)
Q Consensus 182 ~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli 217 (394)
+|++..+++|++... +..+++++.+++++++.+.+
T Consensus 122 ~ii~~~~l~~~~~~~-~~~~l~~i~~~~~~~~~i~~ 156 (219)
T TIGR02021 122 IVVCMDVLIHYPASD-MAKALGHLASLTKERVIFTF 156 (219)
T ss_pred EEEEhhHHHhCCHHH-HHHHHHHHHHHhCCCEEEEE
Confidence 999999999987544 78899999999987655443
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM. |
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=7e-13 Score=133.33 Aligned_cols=101 Identities=26% Similarity=0.374 Sum_probs=84.9
Q ss_pred CCCCCCEEEEEcCccCccccc---CCCcEEEEEeCCHHHHHHHHHc----CCeEEEeecCCCCCCCCCccEEEehhhhhh
Q 016157 119 SLPSGSLVLDAGCGNGKYLGL---NPDCFFVGCDISPSLIKICVDR----GHEVLVADAVNLPYRSDFGDAAISIAVLHH 191 (394)
Q Consensus 119 ~l~~g~~VLDvGCG~G~~l~~---~~~~~v~gvD~S~~~l~~a~~~----~i~~~~~D~~~lp~~~~~fD~Vi~~~vl~h 191 (394)
.++++.+|||||||+|.++.. ..+.+|+|+|+|+.+++.|+++ ++++..+|..++ +++||.|+++.+++|
T Consensus 164 ~l~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~~l~v~~~~~D~~~l---~~~fD~Ivs~~~~eh 240 (383)
T PRK11705 164 QLKPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCAGLPVEIRLQDYRDL---NGQFDRIVSVGMFEH 240 (383)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccCeEEEEECchhhc---CCCCCEEEEeCchhh
Confidence 357889999999999997542 3467999999999999999886 356777787665 478999999999999
Q ss_pred cCChhHHHHHHHHHHhccccCcEEEEEEcCcc
Q 016157 192 LSTESRRKKAIEELVRVVKKGSLVLITVWAVE 223 (394)
Q Consensus 192 l~~~~~~~~~L~ei~r~LkpGG~lli~~~~~~ 223 (394)
+.... +..+++++.++|||||++++.++...
T Consensus 241 vg~~~-~~~~l~~i~r~LkpGG~lvl~~i~~~ 271 (383)
T PRK11705 241 VGPKN-YRTYFEVVRRCLKPDGLFLLHTIGSN 271 (383)
T ss_pred CChHH-HHHHHHHHHHHcCCCcEEEEEEccCC
Confidence 97543 67899999999999999999987654
|
|
| >KOG2361 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.1e-12 Score=120.83 Aligned_cols=136 Identities=23% Similarity=0.305 Sum_probs=99.8
Q ss_pred HHHHHHHHHHhhccccccccccchHHHHHHHcC--CCCCCEEEEEcCccCccc----cc--CCCcEEEEEeCCHHHHHHH
Q 016157 87 EKKYVHRVYDAIAPHFSSTRFAKWPKVATFLNS--LPSGSLVLDAGCGNGKYL----GL--NPDCFFVGCDISPSLIKIC 158 (394)
Q Consensus 87 ~~~~v~~~Yd~~a~~y~~~~~~~~~~l~~~l~~--l~~g~~VLDvGCG~G~~l----~~--~~~~~v~gvD~S~~~l~~a 158 (394)
...++..+|-..-..|-..|+-..++.-.++.. ..++ +|||||||.|..+ +. .++..++++|.|+.+++..
T Consensus 35 ~~k~wD~fy~~~~~rFfkdR~wL~~Efpel~~~~~~~~~-~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~v 113 (264)
T KOG2361|consen 35 ASKYWDTFYKIHENRFFKDRNWLLREFPELLPVDEKSAE-TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELV 113 (264)
T ss_pred hhhhhhhhhhhccccccchhHHHHHhhHHhhCccccChh-hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHH
Confidence 346788888887777765553222333333321 1122 8999999999853 33 3448999999999999999
Q ss_pred HHc------CCeEEEeecCC----CCCCCCCccEEEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCccc
Q 016157 159 VDR------GHEVLVADAVN----LPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQ 224 (394)
Q Consensus 159 ~~~------~i~~~~~D~~~----lp~~~~~fD~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~~~ 224 (394)
+++ .+.....|+.. -|...+++|+|++++||..++... ...+++++.++|||||.+++-.++..+
T Consensus 114 k~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~IFvLSAi~pek-~~~a~~nl~~llKPGG~llfrDYg~~D 188 (264)
T KOG2361|consen 114 KKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLIFVLSAIHPEK-MQSVIKNLRTLLKPGGSLLFRDYGRYD 188 (264)
T ss_pred HhccccchhhhcccceeccchhccCCCCcCccceEEEEEEEeccChHH-HHHHHHHHHHHhCCCcEEEEeecccch
Confidence 887 34445555543 345678999999999999998654 799999999999999999999987644
|
|
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=6.7e-13 Score=127.58 Aligned_cols=91 Identities=35% Similarity=0.469 Sum_probs=75.6
Q ss_pred CCCEEEEEcCccCccccc----CC---CcEEEEEeCCHHHHHHHHHc--CCeEEEeecCCCCCCCCCccEEEehhhhhhc
Q 016157 122 SGSLVLDAGCGNGKYLGL----NP---DCFFVGCDISPSLIKICVDR--GHEVLVADAVNLPYRSDFGDAAISIAVLHHL 192 (394)
Q Consensus 122 ~g~~VLDvGCG~G~~l~~----~~---~~~v~gvD~S~~~l~~a~~~--~i~~~~~D~~~lp~~~~~fD~Vi~~~vl~hl 192 (394)
.+.+|||+|||+|.++.. .+ +..++|+|+|+.|++.|+++ ++.+.++|+.++|+++++||+|+++..
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~~~lp~~~~sfD~I~~~~~---- 160 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCVASSHRLPFADQSLDAIIRIYA---- 160 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCCeEEEeecccCCCcCCceeEEEEecC----
Confidence 446899999999997532 22 34799999999999999877 688999999999999999999998653
Q ss_pred CChhHHHHHHHHHHhccccCcEEEEEEcCc
Q 016157 193 STESRRKKAIEELVRVVKKGSLVLITVWAV 222 (394)
Q Consensus 193 ~~~~~~~~~L~ei~r~LkpGG~lli~~~~~ 222 (394)
+ ..++++.|+|||||+|++..+..
T Consensus 161 ~------~~~~e~~rvLkpgG~li~~~p~~ 184 (272)
T PRK11088 161 P------CKAEELARVVKPGGIVITVTPGP 184 (272)
T ss_pred C------CCHHHHHhhccCCCEEEEEeCCC
Confidence 1 24688999999999999987654
|
|
| >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins | Back alignment and domain information |
|---|
Probab=99.40 E-value=7.9e-13 Score=119.18 Aligned_cols=100 Identities=21% Similarity=0.238 Sum_probs=78.9
Q ss_pred CCCCEEEEEcCccCccccc-CC-CcEEEEEeCCHHHHHHHHHc-----CCeEEEeecCCCCCCCCCccEEEehhhhhhcC
Q 016157 121 PSGSLVLDAGCGNGKYLGL-NP-DCFFVGCDISPSLIKICVDR-----GHEVLVADAVNLPYRSDFGDAAISIAVLHHLS 193 (394)
Q Consensus 121 ~~g~~VLDvGCG~G~~l~~-~~-~~~v~gvD~S~~~l~~a~~~-----~i~~~~~D~~~lp~~~~~fD~Vi~~~vl~hl~ 193 (394)
+...++||+|||+|.++.. .+ .-.++++|+|+.+++.|+++ +++++++|+.+. .+.+.||+|++..+++++.
T Consensus 42 ~ry~~alEvGCs~G~lT~~LA~rCd~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~~-~P~~~FDLIV~SEVlYYL~ 120 (201)
T PF05401_consen 42 RRYRRALEVGCSIGVLTERLAPRCDRLLAVDISPRALARARERLAGLPHVEWIQADVPEF-WPEGRFDLIVLSEVLYYLD 120 (201)
T ss_dssp SSEEEEEEE--TTSHHHHHHGGGEEEEEEEES-HHHHHHHHHHTTT-SSEEEEES-TTT----SS-EEEEEEES-GGGSS
T ss_pred cccceeEecCCCccHHHHHHHHhhCceEEEeCCHHHHHHHHHhcCCCCCeEEEECcCCCC-CCCCCeeEEEEehHhHcCC
Confidence 3447999999999998653 23 23899999999999999998 689999999775 4678999999999999998
Q ss_pred ChhHHHHHHHHHHhccccCcEEEEEEcC
Q 016157 194 TESRRKKAIEELVRVVKKGSLVLITVWA 221 (394)
Q Consensus 194 ~~~~~~~~L~ei~r~LkpGG~lli~~~~ 221 (394)
+.+.+..++..+...|+|||.+++..|.
T Consensus 121 ~~~~L~~~l~~l~~~L~pgG~LV~g~~r 148 (201)
T PF05401_consen 121 DAEDLRAALDRLVAALAPGGHLVFGHAR 148 (201)
T ss_dssp SHHHHHHHHHHHHHTEEEEEEEEEEEE-
T ss_pred CHHHHHHHHHHHHHHhCCCCEEEEEEec
Confidence 7655889999999999999999999874
|
The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. |
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.9e-13 Score=123.45 Aligned_cols=138 Identities=22% Similarity=0.318 Sum_probs=107.9
Q ss_pred HHHHHHHHHHHHhhccccccc-----cccchHHHHHHHcCCCCC--CEEEEEcCccCcccccCCC--cEEEEEeCCHHHH
Q 016157 85 ELEKKYVHRVYDAIAPHFSST-----RFAKWPKVATFLNSLPSG--SLVLDAGCGNGKYLGLNPD--CFFVGCDISPSLI 155 (394)
Q Consensus 85 ~~~~~~v~~~Yd~~a~~y~~~-----~~~~~~~l~~~l~~l~~g--~~VLDvGCG~G~~l~~~~~--~~v~gvD~S~~~l 155 (394)
.....||...||..++.|+.. .|.....+.+.+.....| .++||+|||||..-...+. .+++|+|+|.+|+
T Consensus 81 ~pP~aYVe~LFD~~Ae~Fd~~LVdkL~Y~vP~~l~emI~~~~~g~F~~~lDLGCGTGL~G~~lR~~a~~ltGvDiS~nMl 160 (287)
T COG4976 81 KPPSAYVETLFDQYAERFDHILVDKLGYSVPELLAEMIGKADLGPFRRMLDLGCGTGLTGEALRDMADRLTGVDISENML 160 (287)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHhccCCccceeeecccCcCcccHhHHHHHhhccCCchhHHHH
Confidence 444589999999999999863 344455667777665555 7999999999987543222 3799999999999
Q ss_pred HHHHHcCC--eEEEeecCC-CC-CCCCCccEEEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCccch
Q 016157 156 KICVDRGH--EVLVADAVN-LP-YRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQE 225 (394)
Q Consensus 156 ~~a~~~~i--~~~~~D~~~-lp-~~~~~fD~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~~~~ 225 (394)
++|.++++ .+.++|+.. ++ ..++.||+|++..|+.++.. ...++.-+...|+|||.|.+++-.....
T Consensus 161 ~kA~eKg~YD~L~~Aea~~Fl~~~~~er~DLi~AaDVl~YlG~---Le~~~~~aa~~L~~gGlfaFSvE~l~~~ 231 (287)
T COG4976 161 AKAHEKGLYDTLYVAEAVLFLEDLTQERFDLIVAADVLPYLGA---LEGLFAGAAGLLAPGGLFAFSVETLPDD 231 (287)
T ss_pred HHHHhccchHHHHHHHHHHHhhhccCCcccchhhhhHHHhhcc---hhhHHHHHHHhcCCCceEEEEecccCCC
Confidence 99999964 345555543 22 45688999999999999998 8899999999999999999998655443
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.35 E-value=4.2e-12 Score=131.36 Aligned_cols=100 Identities=23% Similarity=0.281 Sum_probs=84.4
Q ss_pred CCCEEEEEcCccCccccc--CCCcEEEEEeCCHHHHHHHHHc-----CCeEEEeecC--CCCCCCCCccEEEehhhhhhc
Q 016157 122 SGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR-----GHEVLVADAV--NLPYRSDFGDAAISIAVLHHL 192 (394)
Q Consensus 122 ~g~~VLDvGCG~G~~l~~--~~~~~v~gvD~S~~~l~~a~~~-----~i~~~~~D~~--~lp~~~~~fD~Vi~~~vl~hl 192 (394)
++.+|||||||+|.++.. ....+++|+|+|+.|++.+++. ++.++++|+. .+++++++||+|++..+++|+
T Consensus 37 ~~~~vLDlGcG~G~~~~~la~~~~~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~~~~~~~fD~I~~~~~l~~l 116 (475)
T PLN02336 37 EGKSVLELGAGIGRFTGELAKKAGQVIALDFIESVIKKNESINGHYKNVKFMCADVTSPDLNISDGSVDLIFSNWLLMYL 116 (475)
T ss_pred CCCEEEEeCCCcCHHHHHHHhhCCEEEEEeCCHHHHHHHHHHhccCCceEEEEecccccccCCCCCCEEEEehhhhHHhC
Confidence 567999999999997542 2345899999999999988654 5789999996 467778899999999999999
Q ss_pred CChhHHHHHHHHHHhccccCcEEEEEEcCc
Q 016157 193 STESRRKKAIEELVRVVKKGSLVLITVWAV 222 (394)
Q Consensus 193 ~~~~~~~~~L~ei~r~LkpGG~lli~~~~~ 222 (394)
++.+ +..+++++.++|||||++++.....
T Consensus 117 ~~~~-~~~~l~~~~r~Lk~gG~l~~~d~~~ 145 (475)
T PLN02336 117 SDKE-VENLAERMVKWLKVGGYIFFRESCF 145 (475)
T ss_pred CHHH-HHHHHHHHHHhcCCCeEEEEEeccC
Confidence 8754 6899999999999999999986544
|
|
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.3e-11 Score=111.74 Aligned_cols=90 Identities=19% Similarity=0.166 Sum_probs=73.3
Q ss_pred CCCEEEEEcCccCcccc----cCCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeecCCCCCCCCCccEEEehhhhh
Q 016157 122 SGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFGDAAISIAVLH 190 (394)
Q Consensus 122 ~g~~VLDvGCG~G~~l~----~~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~lp~~~~~fD~Vi~~~vl~ 190 (394)
++.+|||+|||+|.... ..+..+|+|+|+|+.|++.++++ +++++++|+.+++. .++||+|++.. ++
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~~-~~~fD~I~s~~-~~ 119 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQH-EEQFDVITSRA-LA 119 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhccc-cCCccEEEehh-hh
Confidence 37899999999998532 35667999999999999887654 47899999998753 67899999976 33
Q ss_pred hcCChhHHHHHHHHHHhccccCcEEEEEE
Q 016157 191 HLSTESRRKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 191 hl~~~~~~~~~L~ei~r~LkpGG~lli~~ 219 (394)
+ ...+++.+.++|+|||++++..
T Consensus 120 ---~---~~~~~~~~~~~LkpgG~lvi~~ 142 (181)
T TIGR00138 120 ---S---LNVLLELTLNLLKVGGYFLAYK 142 (181)
T ss_pred ---C---HHHHHHHHHHhcCCCCEEEEEc
Confidence 3 4568888999999999999874
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=99.34 E-value=9.2e-12 Score=104.14 Aligned_cols=95 Identities=17% Similarity=0.224 Sum_probs=75.6
Q ss_pred CCCCCEEEEEcCccCcccc----cCCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeecCC-CCCCCCCccEEEehh
Q 016157 120 LPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVN-LPYRSDFGDAAISIA 187 (394)
Q Consensus 120 l~~g~~VLDvGCG~G~~l~----~~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~-lp~~~~~fD~Vi~~~ 187 (394)
+.++.+|||+|||+|.++. ..+...++|+|+|+.+++.++++ +++++.+|+.. ++...++||+|++..
T Consensus 17 ~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~ 96 (124)
T TIGR02469 17 LRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEPDRVFIGG 96 (124)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCCCEEEECC
Confidence 4567899999999999743 35668999999999999998764 46777888765 333346899999976
Q ss_pred hhhhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 016157 188 VLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (394)
Q Consensus 188 vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~ 220 (394)
..++ ...+++++.++|||||.+++.+.
T Consensus 97 ~~~~------~~~~l~~~~~~Lk~gG~li~~~~ 123 (124)
T TIGR02469 97 SGGL------LQEILEAIWRRLRPGGRIVLNAI 123 (124)
T ss_pred cchh------HHHHHHHHHHHcCCCCEEEEEec
Confidence 5432 46899999999999999999864
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.32 E-value=8.3e-12 Score=119.41 Aligned_cols=135 Identities=22% Similarity=0.378 Sum_probs=95.4
Q ss_pred cchHHHHHHHcCCCCCCEEEEEcCccCccccc--CCCc-EEEEEeCCHHHHHHHHH--c--C--C--eEEEeecCCCCCC
Q 016157 108 AKWPKVATFLNSLPSGSLVLDAGCGNGKYLGL--NPDC-FFVGCDISPSLIKICVD--R--G--H--EVLVADAVNLPYR 176 (394)
Q Consensus 108 ~~~~~l~~~l~~l~~g~~VLDvGCG~G~~l~~--~~~~-~v~gvD~S~~~l~~a~~--~--~--i--~~~~~D~~~lp~~ 176 (394)
-.|.++...+..+ .|.+|||||||+|+++-. ..|. .|+|+|++....-...- + + . .++..-++++|.
T Consensus 102 ~KW~rl~p~l~~L-~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~- 179 (315)
T PF08003_consen 102 WKWDRLLPHLPDL-KGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPN- 179 (315)
T ss_pred chHHHHHhhhCCc-CCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccc-
Confidence 4566777777654 578999999999998632 3344 79999999875544221 1 1 2 223346777887
Q ss_pred CCCccEEEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCccchhhh----------hccccccchHHHHHhHhC
Q 016157 177 SDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKS----------LVTKWTPLTQKYVEEWIG 246 (394)
Q Consensus 177 ~~~fD~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~~~~~~~----------~~~~~~~~~~~~~~~w~~ 246 (394)
.+.||+|+|.+||.|..+ +...|.++...|+|||.+++.+...+..... ..+.|+--+...+..|+.
T Consensus 180 ~~~FDtVF~MGVLYHrr~---Pl~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P~~rYa~m~nv~FiPs~~~L~~wl~ 256 (315)
T PF08003_consen 180 LGAFDTVFSMGVLYHRRS---PLDHLKQLKDSLRPGGELVLETLVIDGDENTVLVPEDRYAKMRNVWFIPSVAALKNWLE 256 (315)
T ss_pred cCCcCEEEEeeehhccCC---HHHHHHHHHHhhCCCCEEEEEEeeecCCCceEEccCCcccCCCceEEeCCHHHHHHHHH
Confidence 789999999999999999 8999999999999999999887644432221 123343334456777775
Q ss_pred C
Q 016157 247 P 247 (394)
Q Consensus 247 ~ 247 (394)
+
T Consensus 257 r 257 (315)
T PF08003_consen 257 R 257 (315)
T ss_pred H
Confidence 3
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification |
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=7.4e-12 Score=115.87 Aligned_cols=109 Identities=17% Similarity=0.181 Sum_probs=82.0
Q ss_pred HHHHHHcCCCCCCEEEEEcCccCccccc-----CCCcEEEEEeCCHHHHHHHHHcCCeEEEeecCCCC--------CCCC
Q 016157 112 KVATFLNSLPSGSLVLDAGCGNGKYLGL-----NPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLP--------YRSD 178 (394)
Q Consensus 112 ~l~~~l~~l~~g~~VLDvGCG~G~~l~~-----~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~lp--------~~~~ 178 (394)
++......++++.+|||||||+|.++.. .+...|+|+|+++ |.. ..++.++++|+.+.+ +.++
T Consensus 41 ~~~~~~~~~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~~~---~~~v~~i~~D~~~~~~~~~i~~~~~~~ 116 (209)
T PRK11188 41 EIQQSDKLFKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-MDP---IVGVDFLQGDFRDELVLKALLERVGDS 116 (209)
T ss_pred HHHHHhccCCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-ccC---CCCcEEEecCCCChHHHHHHHHHhCCC
Confidence 4444445568899999999999997532 3456999999988 321 237899999999853 5678
Q ss_pred CccEEEehhhhhhcCChh--------HHHHHHHHHHhccccCcEEEEEEcCccc
Q 016157 179 FGDAAISIAVLHHLSTES--------RRKKAIEELVRVVKKGSLVLITVWAVEQ 224 (394)
Q Consensus 179 ~fD~Vi~~~vl~hl~~~~--------~~~~~L~ei~r~LkpGG~lli~~~~~~~ 224 (394)
+||+|++..+.++...+. ....+|+++.++|||||.|++.+|..+.
T Consensus 117 ~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~~~ 170 (209)
T PRK11188 117 KVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQGEG 170 (209)
T ss_pred CCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecCcC
Confidence 999999987666543321 0256899999999999999999887643
|
|
| >PRK13256 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.32 E-value=2e-11 Score=113.78 Aligned_cols=134 Identities=17% Similarity=0.197 Sum_probs=104.1
Q ss_pred HHHHHHHHHHhhccccccccccchHHHHHHHcCC--CCCCEEEEEcCccCcccc--cCCCcEEEEEeCCHHHHHHHHHc-
Q 016157 87 EKKYVHRVYDAIAPHFSSTRFAKWPKVATFLNSL--PSGSLVLDAGCGNGKYLG--LNPDCFFVGCDISPSLIKICVDR- 161 (394)
Q Consensus 87 ~~~~v~~~Yd~~a~~y~~~~~~~~~~l~~~l~~l--~~g~~VLDvGCG~G~~l~--~~~~~~v~gvD~S~~~l~~a~~~- 161 (394)
+.+.+++.|++-...|+... +-+.+...+..+ +++.+||+.|||.|..+. +..|..|+|+|+|+.+++.+.+.
T Consensus 8 ~~~fW~~rw~~~~~~f~~~~--pnp~L~~~~~~l~~~~~~rvLvPgCGkg~D~~~LA~~G~~V~GvDlS~~Ai~~~~~e~ 85 (226)
T PRK13256 8 NNQYWLDRWQNDDVGFCQES--PNEFLVKHFSKLNINDSSVCLIPMCGCSIDMLFFLSKGVKVIGIELSEKAVLSFFSQN 85 (226)
T ss_pred CHHHHHHHHhcCCCCCccCC--CCHHHHHHHHhcCCCCCCeEEEeCCCChHHHHHHHhCCCcEEEEecCHHHHHHHHHHc
Confidence 45678888887666665433 233343444433 456899999999999654 36788999999999999997551
Q ss_pred ------------------CCeEEEeecCCCCCC---CCCccEEEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 016157 162 ------------------GHEVLVADAVNLPYR---SDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (394)
Q Consensus 162 ------------------~i~~~~~D~~~lp~~---~~~fD~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~ 220 (394)
.+++.++|+.+++.. .+.||+|+-.+++++++... +.+..+.+.++|+|||.+++.++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~~~~~fD~VyDra~~~Alpp~~-R~~Y~~~l~~lL~pgg~llll~~ 164 (226)
T PRK13256 86 TINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIANNLPVFDIWYDRGAYIALPNDL-RTNYAKMMLEVCSNNTQILLLVM 164 (226)
T ss_pred CCCcceecccccceeccCceEEEEccCcCCCccccccCCcCeeeeehhHhcCCHHH-HHHHHHHHHHHhCCCcEEEEEEE
Confidence 579999999998642 26899999999999997654 89999999999999999999987
Q ss_pred Ccc
Q 016157 221 AVE 223 (394)
Q Consensus 221 ~~~ 223 (394)
..+
T Consensus 165 ~~~ 167 (226)
T PRK13256 165 EHD 167 (226)
T ss_pred ecC
Confidence 544
|
|
| >PLN02232 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.31 E-value=5.7e-12 Score=111.71 Aligned_cols=76 Identities=29% Similarity=0.356 Sum_probs=69.4
Q ss_pred EEEeCCHHHHHHHHHc----------CCeEEEeecCCCCCCCCCccEEEehhhhhhcCChhHHHHHHHHHHhccccCcEE
Q 016157 146 VGCDISPSLIKICVDR----------GHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLV 215 (394)
Q Consensus 146 ~gvD~S~~~l~~a~~~----------~i~~~~~D~~~lp~~~~~fD~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~l 215 (394)
+|+|+|++|++.|+++ +++++++|+.++|+.+++||+|++..++||+++ +..+|++++|+|||||.+
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d---~~~~l~ei~rvLkpGG~l 77 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVD---RLRAMKEMYRVLKPGSRV 77 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcCCC---HHHHHHHHHHHcCcCeEE
Confidence 5899999999999754 378999999999999999999999999999988 889999999999999999
Q ss_pred EEEEcCccc
Q 016157 216 LITVWAVEQ 224 (394)
Q Consensus 216 li~~~~~~~ 224 (394)
++..|..+.
T Consensus 78 ~i~d~~~~~ 86 (160)
T PLN02232 78 SILDFNKSN 86 (160)
T ss_pred EEEECCCCC
Confidence 999987543
|
|
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.31 E-value=3.1e-12 Score=117.72 Aligned_cols=100 Identities=18% Similarity=0.217 Sum_probs=78.7
Q ss_pred CCCEEEEEcCccCcccc----cCCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeec-CCCC--CCCCCccEEEehh
Q 016157 122 SGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR-------GHEVLVADA-VNLP--YRSDFGDAAISIA 187 (394)
Q Consensus 122 ~g~~VLDvGCG~G~~l~----~~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~-~~lp--~~~~~fD~Vi~~~ 187 (394)
++.+|||+|||+|.++. ..++..++|+|+|+.+++.|+++ ++.++++|+ ..++ +++++||+|++..
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~ 119 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLNF 119 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEEC
Confidence 56799999999998743 35677999999999999999874 578999999 6666 6678999999876
Q ss_pred hhhhcCChh-----HHHHHHHHHHhccccCcEEEEEEcC
Q 016157 188 VLHHLSTES-----RRKKAIEELVRVVKKGSLVLITVWA 221 (394)
Q Consensus 188 vl~hl~~~~-----~~~~~L~ei~r~LkpGG~lli~~~~ 221 (394)
...+..... ....+|+++.++|||||.|++....
T Consensus 120 ~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~ 158 (202)
T PRK00121 120 PDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDW 158 (202)
T ss_pred CCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCC
Confidence 543222100 1367899999999999999998643
|
|
| >KOG3010 consensus Methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.30 E-value=4.2e-12 Score=116.97 Aligned_cols=119 Identities=18% Similarity=0.214 Sum_probs=82.3
Q ss_pred ccccccccccchHHHHHHHcCCCCCC-EEEEEcCccCcccccCC--CcEEEEEeCCHHHHHHHHHc--------CCeEEE
Q 016157 99 APHFSSTRFAKWPKVATFLNSLPSGS-LVLDAGCGNGKYLGLNP--DCFFVGCDISPSLIKICVDR--------GHEVLV 167 (394)
Q Consensus 99 a~~y~~~~~~~~~~l~~~l~~l~~g~-~VLDvGCG~G~~l~~~~--~~~v~gvD~S~~~l~~a~~~--------~i~~~~ 167 (394)
+.+|...|...-......+....++. .++|+|||+|.-+.... --+|+|+|+|+.||+.|++. +..+..
T Consensus 9 a~~Y~~ARP~YPtdw~~~ia~~~~~h~~a~DvG~G~Gqa~~~iae~~k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~ 88 (261)
T KOG3010|consen 9 AADYLNARPSYPTDWFKKIASRTEGHRLAWDVGTGNGQAARGIAEHYKEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSS 88 (261)
T ss_pred HHHHhhcCCCCcHHHHHHHHhhCCCcceEEEeccCCCcchHHHHHhhhhheeecCCHHHHHHhhcCCCcccccCCccccc
Confidence 33343333333233444444444554 88999999996543222 23899999999999999987 233444
Q ss_pred eecCCCCCCCCCccEEEehhhhhhcCChhHHHHHHHHHHhccccCc-EEEEEEcC
Q 016157 168 ADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGS-LVLITVWA 221 (394)
Q Consensus 168 ~D~~~lp~~~~~fD~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG-~lli~~~~ 221 (394)
.++..|--.+++.|+|++..++|++. ..++.+++.|+||+.| .+.+-.+.
T Consensus 89 ~~~v~L~g~e~SVDlI~~Aqa~HWFd----le~fy~~~~rvLRk~Gg~iavW~Y~ 139 (261)
T KOG3010|consen 89 DEMVDLLGGEESVDLITAAQAVHWFD----LERFYKEAYRVLRKDGGLIAVWNYN 139 (261)
T ss_pred cccccccCCCcceeeehhhhhHHhhc----hHHHHHHHHHHcCCCCCEEEEEEcc
Confidence 44455544489999999999999997 5889999999998776 66655554
|
|
| >PLN02585 magnesium protoporphyrin IX methyltransferase | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.7e-11 Score=119.99 Aligned_cols=129 Identities=22% Similarity=0.280 Sum_probs=87.7
Q ss_pred hHHHHHHHHHHHHhhc-----ccccccc-------ccch------HHHHHHHcCC--CCCCEEEEEcCccCccccc--CC
Q 016157 84 PELEKKYVHRVYDAIA-----PHFSSTR-------FAKW------PKVATFLNSL--PSGSLVLDAGCGNGKYLGL--NP 141 (394)
Q Consensus 84 ~~~~~~~v~~~Yd~~a-----~~y~~~~-------~~~~------~~l~~~l~~l--~~g~~VLDvGCG~G~~l~~--~~ 141 (394)
...+++.|.++|++++ ..|+... ...| ..+..++... .++.+|||||||+|.++.. ..
T Consensus 86 ~~~~~~~V~~~Fd~~a~~~w~~iy~~~d~v~~~~l~~~~~~~~~v~~~l~~l~~~~~~~~~~VLDlGcGtG~~a~~la~~ 165 (315)
T PLN02585 86 GGDDKEVVREYFNTTGFERWRKIYGETDEVNKVQLDIRLGHAQTVEKVLLWLAEDGSLAGVTVCDAGCGTGSLAIPLALE 165 (315)
T ss_pred HHHHHHHHHHHhcccchhhHHHhcCCccccCceeeecccChHHHHHHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHC
Confidence 3566788999998763 3344311 1222 2234444322 2578999999999997532 34
Q ss_pred CcEEEEEeCCHHHHHHHHHc------------CCeEEEeecCCCCCCCCCccEEEehhhhhhcCChhHHHHHHHHHHhcc
Q 016157 142 DCFFVGCDISPSLIKICVDR------------GHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVV 209 (394)
Q Consensus 142 ~~~v~gvD~S~~~l~~a~~~------------~i~~~~~D~~~lp~~~~~fD~Vi~~~vl~hl~~~~~~~~~L~ei~r~L 209 (394)
+..|+|+|+|+.|++.|+++ ++.+..+|+..+ +++||+|+|..+++|+++.. ...+++.+.+ +
T Consensus 166 g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l---~~~fD~Vv~~~vL~H~p~~~-~~~ll~~l~~-l 240 (315)
T PLN02585 166 GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL---SGKYDTVTCLDVLIHYPQDK-ADGMIAHLAS-L 240 (315)
T ss_pred CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc---CCCcCEEEEcCEEEecCHHH-HHHHHHHHHh-h
Confidence 67999999999999999876 135667776554 57899999999999988744 4567777775 4
Q ss_pred ccCcEEEEE
Q 016157 210 KKGSLVLIT 218 (394)
Q Consensus 210 kpGG~lli~ 218 (394)
.+||. +|.
T Consensus 241 ~~g~l-iIs 248 (315)
T PLN02585 241 AEKRL-IIS 248 (315)
T ss_pred cCCEE-EEE
Confidence 55555 443
|
|
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.3e-11 Score=118.97 Aligned_cols=96 Identities=21% Similarity=0.188 Sum_probs=81.2
Q ss_pred CCCEEEEEcCccCccc------ccCCCcEEEEEeCCHHHHHHHHHc---------CCeEEEeecCCCCCCCCCccEEEeh
Q 016157 122 SGSLVLDAGCGNGKYL------GLNPDCFFVGCDISPSLIKICVDR---------GHEVLVADAVNLPYRSDFGDAAISI 186 (394)
Q Consensus 122 ~g~~VLDvGCG~G~~l------~~~~~~~v~gvD~S~~~l~~a~~~---------~i~~~~~D~~~lp~~~~~fD~Vi~~ 186 (394)
+..+|||||||.|.+. ...++..++|+|+++.+++.|++. +++|..+|+.+++...+.||+|++.
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~~ 202 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFLA 202 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEEe
Confidence 5679999999998652 246888999999999999998874 4899999998865335789999999
Q ss_pred hhhhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 016157 187 AVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 187 ~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~ 219 (394)
+++++.... +.++|+++++.|+|||.+++-.
T Consensus 203 -ALi~~dk~~-k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 203 -ALVGMDKEE-KVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred -ccccccccc-HHHHHHHHHHhcCCCcEEEEec
Confidence 888885333 7999999999999999999986
|
|
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.7e-11 Score=111.65 Aligned_cols=91 Identities=23% Similarity=0.237 Sum_probs=73.8
Q ss_pred CCCCCEEEEEcCccCccccc-----CCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeecCCCCCCCCCccEEEeh
Q 016157 120 LPSGSLVLDAGCGNGKYLGL-----NPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISI 186 (394)
Q Consensus 120 l~~g~~VLDvGCG~G~~l~~-----~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~lp~~~~~fD~Vi~~ 186 (394)
+.++.+|||||||+|.++.. .+...|+|+|+++.+++.|+++ +++++.+|+.+......+||+|++.
T Consensus 70 ~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~~~~fD~Ii~~ 149 (205)
T PRK13944 70 PRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEKHAPFDAIIVT 149 (205)
T ss_pred CCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCccCCCccEEEEc
Confidence 46788999999999997531 3356999999999999998875 2678999998755456799999999
Q ss_pred hhhhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 016157 187 AVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 187 ~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~ 219 (394)
.+++|++ .++.+.|+|||++++..
T Consensus 150 ~~~~~~~---------~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 150 AAASTIP---------SALVRQLKDGGVLVIPV 173 (205)
T ss_pred cCcchhh---------HHHHHhcCcCcEEEEEE
Confidence 9887764 35778999999998865
|
|
| >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.3e-11 Score=113.34 Aligned_cols=90 Identities=24% Similarity=0.321 Sum_probs=71.3
Q ss_pred CCCCCEEEEEcCccCccccc--CCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeecCCCCCCCCCccEEEehhhh
Q 016157 120 LPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISIAVL 189 (394)
Q Consensus 120 l~~g~~VLDvGCG~G~~l~~--~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~lp~~~~~fD~Vi~~~vl 189 (394)
..++.+|||||||+|.++.. ..+..++|+|+|+.|++.|+++ .+.+..+|+ +..+++||+|++..++
T Consensus 61 ~~~~~~vLDvGcG~G~~~~~l~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~---~~~~~~fD~v~~~~~l 137 (230)
T PRK07580 61 DLTGLRILDAGCGVGSLSIPLARRGAKVVASDISPQMVEEARERAPEAGLAGNITFEVGDL---ESLLGRFDTVVCLDVL 137 (230)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCc---hhccCCcCEEEEcchh
Confidence 45678999999999997532 3456799999999999999876 357788884 3346789999999999
Q ss_pred hhcCChhHHHHHHHHHHhccccCc
Q 016157 190 HHLSTESRRKKAIEELVRVVKKGS 213 (394)
Q Consensus 190 ~hl~~~~~~~~~L~ei~r~LkpGG 213 (394)
+|++++. ...+++++.+.+++++
T Consensus 138 ~~~~~~~-~~~~l~~l~~~~~~~~ 160 (230)
T PRK07580 138 IHYPQED-AARMLAHLASLTRGSL 160 (230)
T ss_pred hcCCHHH-HHHHHHHHHhhcCCeE
Confidence 9988654 6788999998775443
|
|
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Probab=99.25 E-value=3.7e-11 Score=117.41 Aligned_cols=100 Identities=16% Similarity=0.201 Sum_probs=82.8
Q ss_pred CCCCCCEEEEEcCccCccc----ccCCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeecCCCCCCCCCccEEEeh
Q 016157 119 SLPSGSLVLDAGCGNGKYL----GLNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISI 186 (394)
Q Consensus 119 ~l~~g~~VLDvGCG~G~~l----~~~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~lp~~~~~fD~Vi~~ 186 (394)
.+.++.+|||||||+|.++ ...|+.+++++|+ +.+++.++++ +++++.+|+.+.+++. +|+|++.
T Consensus 146 ~~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~~--~D~v~~~ 222 (306)
T TIGR02716 146 KLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYPE--ADAVLFC 222 (306)
T ss_pred CCCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCCCCC--CCEEEeE
Confidence 3567789999999999975 3478889999998 7889888764 3789999998766643 6999999
Q ss_pred hhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCc
Q 016157 187 AVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAV 222 (394)
Q Consensus 187 ~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~ 222 (394)
.++|++.+.. ...+|++++++|||||+++|..+..
T Consensus 223 ~~lh~~~~~~-~~~il~~~~~~L~pgG~l~i~d~~~ 257 (306)
T TIGR02716 223 RILYSANEQL-STIMCKKAFDAMRSGGRLLILDMVI 257 (306)
T ss_pred hhhhcCChHH-HHHHHHHHHHhcCCCCEEEEEEecc
Confidence 9999987643 5789999999999999999997644
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. |
| >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Probab=99.24 E-value=9.9e-12 Score=113.61 Aligned_cols=99 Identities=24% Similarity=0.372 Sum_probs=77.6
Q ss_pred CCCEEEEEcCccCcccc----cCCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeecCCCC---CCCCCccEEEehh
Q 016157 122 SGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLP---YRSDFGDAAISIA 187 (394)
Q Consensus 122 ~g~~VLDvGCG~G~~l~----~~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~lp---~~~~~fD~Vi~~~ 187 (394)
...+|||||||+|.++. ..|...++|+|++..+++.|+++ ++.++++|+.+++ ++++++|.|+++.
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~ 95 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNF 95 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEEC
Confidence 45699999999999753 36788999999999999998765 5789999998754 4556899999876
Q ss_pred hhhhcCChh--H---HHHHHHHHHhccccCcEEEEEEc
Q 016157 188 VLHHLSTES--R---RKKAIEELVRVVKKGSLVLITVW 220 (394)
Q Consensus 188 vl~hl~~~~--~---~~~~L~ei~r~LkpGG~lli~~~ 220 (394)
...+..... + ...+++++.++|||||.|++.+-
T Consensus 96 pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td 133 (194)
T TIGR00091 96 PDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTD 133 (194)
T ss_pred CCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeC
Confidence 544332210 0 15789999999999999998864
|
In E. coli, this protein flanks the DNA repair protein MutY, also called micA. |
| >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=9.2e-11 Score=109.84 Aligned_cols=99 Identities=22% Similarity=0.262 Sum_probs=82.3
Q ss_pred CCCCCEEEEEcCccCccccc--CCCcEEEEEeCCHHHHHHHHHc------CCeEEEeecCCCC-CCCCCccEEEehhhhh
Q 016157 120 LPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR------GHEVLVADAVNLP-YRSDFGDAAISIAVLH 190 (394)
Q Consensus 120 l~~g~~VLDvGCG~G~~l~~--~~~~~v~gvD~S~~~l~~a~~~------~i~~~~~D~~~lp-~~~~~fD~Vi~~~vl~ 190 (394)
..++.+|||||||+|.++.. ..+..++|+|+++.+++.|+++ .+++...|+..++ ...+.||+|++..+++
T Consensus 46 ~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l~ 125 (233)
T PRK05134 46 GLFGKRVLDVGCGGGILSESMARLGADVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEMLE 125 (233)
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHcCCeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhHhh
Confidence 45678999999999987532 3456899999999999998875 3567778877765 3457899999999999
Q ss_pred hcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 016157 191 HLSTESRRKKAIEELVRVVKKGSLVLITVWA 221 (394)
Q Consensus 191 hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~ 221 (394)
|+.+ +..+|+.+.++|+|||.+++..+.
T Consensus 126 ~~~~---~~~~l~~~~~~L~~gG~l~v~~~~ 153 (233)
T PRK05134 126 HVPD---PASFVRACAKLVKPGGLVFFSTLN 153 (233)
T ss_pred ccCC---HHHHHHHHHHHcCCCcEEEEEecC
Confidence 9988 778999999999999999988764
|
|
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.5e-11 Score=110.26 Aligned_cols=107 Identities=18% Similarity=0.221 Sum_probs=78.4
Q ss_pred HHHHHHcCCCCCCEEEEEcCccCcccc-----cCCCcEEEEEeCCHHHHHHHHHcCCeEEEeecCCCC--------CCCC
Q 016157 112 KVATFLNSLPSGSLVLDAGCGNGKYLG-----LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLP--------YRSD 178 (394)
Q Consensus 112 ~l~~~l~~l~~g~~VLDvGCG~G~~l~-----~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~lp--------~~~~ 178 (394)
.+.+....+++|.+|||+|||+|.++. ..+...++|+|+|+.+ ...++.++++|+.+.+ ++.+
T Consensus 22 ~~~~~~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~----~~~~i~~~~~d~~~~~~~~~l~~~~~~~ 97 (188)
T TIGR00438 22 QLNQKFKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK----PIENVDFIRGDFTDEEVLNKIRERVGDD 97 (188)
T ss_pred HHHHHhcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc----cCCCceEEEeeCCChhHHHHHHHHhCCC
Confidence 344445567889999999999998743 1345689999999865 2247889999987643 3467
Q ss_pred CccEEEehhh--------hhhcCChhHHHHHHHHHHhccccCcEEEEEEcCc
Q 016157 179 FGDAAISIAV--------LHHLSTESRRKKAIEELVRVVKKGSLVLITVWAV 222 (394)
Q Consensus 179 ~fD~Vi~~~v--------l~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~ 222 (394)
.||+|++... ++|+...+....+|.++.++|+|||++++..+..
T Consensus 98 ~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~~ 149 (188)
T TIGR00438 98 KVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQG 149 (188)
T ss_pred CccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEccC
Confidence 8999998643 2232222234789999999999999999987554
|
|
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=8e-11 Score=110.17 Aligned_cols=98 Identities=18% Similarity=0.251 Sum_probs=72.7
Q ss_pred cCCCCCCEEEEEcCccCcccc----cCCCcEEEEEeCCHHHHHHHH----Hc-CCeEEEeecCCC----CCCCCCccEEE
Q 016157 118 NSLPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICV----DR-GHEVLVADAVNL----PYRSDFGDAAI 184 (394)
Q Consensus 118 ~~l~~g~~VLDvGCG~G~~l~----~~~~~~v~gvD~S~~~l~~a~----~~-~i~~~~~D~~~l----p~~~~~fD~Vi 184 (394)
..+.+|.+|||+|||+|.++. ..+...|+|+|+++.|++.+. ++ ++.++.+|+... ++ .++||+|+
T Consensus 68 l~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l-~~~~D~i~ 146 (226)
T PRK04266 68 FPIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHV-VEKVDVIY 146 (226)
T ss_pred CCCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhc-cccCCEEE
Confidence 346789999999999999643 233568999999998887543 32 788999998752 22 35699998
Q ss_pred ehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 016157 185 SIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 221 (394)
Q Consensus 185 ~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~ 221 (394)
+. ++++.....+|+++.++|||||+++|.+..
T Consensus 147 ~d-----~~~p~~~~~~L~~~~r~LKpGG~lvI~v~~ 178 (226)
T PRK04266 147 QD-----VAQPNQAEIAIDNAEFFLKDGGYLLLAIKA 178 (226)
T ss_pred EC-----CCChhHHHHHHHHHHHhcCCCcEEEEEEec
Confidence 53 333222456799999999999999997543
|
|
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=99.22 E-value=4.8e-11 Score=107.47 Aligned_cols=100 Identities=19% Similarity=0.199 Sum_probs=78.2
Q ss_pred CCCEEEEEcCccCccccc--CCCcEEEEEeCCHHHHHHHHHc------CCeEEEeecCCCCCCCCCccEEEehhhhhhcC
Q 016157 122 SGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR------GHEVLVADAVNLPYRSDFGDAAISIAVLHHLS 193 (394)
Q Consensus 122 ~g~~VLDvGCG~G~~l~~--~~~~~v~gvD~S~~~l~~a~~~------~i~~~~~D~~~lp~~~~~fD~Vi~~~vl~hl~ 193 (394)
++.+|||+|||+|.++.. ..+..++|+|+|+.+++.++++ +++++.+|+...+ .++||+|+++..+++..
T Consensus 19 ~~~~vLdlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~--~~~fD~Vi~n~p~~~~~ 96 (179)
T TIGR00537 19 KPDDVLEIGAGTGLVAIRLKGKGKCILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGV--RGKFDVILFNPPYLPLE 96 (179)
T ss_pred CCCeEEEeCCChhHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHcCCceEEEEccccccc--CCcccEEEECCCCCCCc
Confidence 456899999999997532 2233899999999999998875 4677888887654 45899999998877665
Q ss_pred Chh------------------HHHHHHHHHHhccccCcEEEEEEcCcc
Q 016157 194 TES------------------RRKKAIEELVRVVKKGSLVLITVWAVE 223 (394)
Q Consensus 194 ~~~------------------~~~~~L~ei~r~LkpGG~lli~~~~~~ 223 (394)
... ....+|+++.++|||||++++......
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~ 144 (179)
T TIGR00537 97 DDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLN 144 (179)
T ss_pred chhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccC
Confidence 321 135789999999999999999876554
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=99.21 E-value=3.7e-11 Score=111.76 Aligned_cols=133 Identities=22% Similarity=0.335 Sum_probs=97.6
Q ss_pred HHHHHHHHHHHhhccccccccccchHHHHHHHcC--CCCCCEEEEEcCccCcccc--cCCCcEEEEEeCCHHHHHHHHHc
Q 016157 86 LEKKYVHRVYDAIAPHFSSTRFAKWPKVATFLNS--LPSGSLVLDAGCGNGKYLG--LNPDCFFVGCDISPSLIKICVDR 161 (394)
Q Consensus 86 ~~~~~v~~~Yd~~a~~y~~~~~~~~~~l~~~l~~--l~~g~~VLDvGCG~G~~l~--~~~~~~v~gvD~S~~~l~~a~~~ 161 (394)
++.+++++.|.+-...|+.... -+.+..++.. .+++.+||..|||.|..+. +..|.+|+|+|+|+.+++.+.+.
T Consensus 1 m~~~~W~~~w~~~~~~w~~~~~--~p~L~~~~~~l~~~~~~rvLvPgCG~g~D~~~La~~G~~VvGvDls~~Ai~~~~~e 78 (218)
T PF05724_consen 1 MDPEFWEERWQEGQTPWDQGEP--NPALVEYLDSLALKPGGRVLVPGCGKGYDMLWLAEQGHDVVGVDLSPTAIEQAFEE 78 (218)
T ss_dssp -HHHHHHHHHHTT--TT--TTS--THHHHHHHHHHTTSTSEEEEETTTTTSCHHHHHHHTTEEEEEEES-HHHHHHHHHH
T ss_pred CCHHHHHHHHhcCCCCCCCCCC--CHHHHHHHHhcCCCCCCeEEEeCCCChHHHHHHHHCCCeEEEEecCHHHHHHHHHH
Confidence 3567888888887766764433 3445555554 6777899999999998643 25688999999999999998432
Q ss_pred -------------------CCeEEEeecCCCCCCC-CCccEEEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 016157 162 -------------------GHEVLVADAVNLPYRS-DFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 221 (394)
Q Consensus 162 -------------------~i~~~~~D~~~lp~~~-~~fD~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~ 221 (394)
++++.++|+.+++... ++||+|+-..+++.++... +.+..+.+.++|+|||.+++.+..
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~~g~fD~iyDr~~l~Alpp~~-R~~Ya~~l~~ll~p~g~~lLi~l~ 157 (218)
T PF05724_consen 79 NNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPEDVGKFDLIYDRTFLCALPPEM-RERYAQQLASLLKPGGRGLLITLE 157 (218)
T ss_dssp CTTEEECTTCTTEEEETTSSEEEEES-TTTGGGSCHHSEEEEEECSSTTTS-GGG-HHHHHHHHHHCEEEEEEEEEEEEE
T ss_pred hccCCCcccccceeeecCCceEEEEcccccCChhhcCCceEEEEecccccCCHHH-HHHHHHHHHHHhCCCCcEEEEEEE
Confidence 2578899999987543 5899999999999998654 899999999999999995555443
|
Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B. |
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=9e-11 Score=108.82 Aligned_cols=92 Identities=23% Similarity=0.253 Sum_probs=74.7
Q ss_pred CCCCCCEEEEEcCccCccccc-----CCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeecCCCCCCCCCccEEEeh
Q 016157 119 SLPSGSLVLDAGCGNGKYLGL-----NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFGDAAISI 186 (394)
Q Consensus 119 ~l~~g~~VLDvGCG~G~~l~~-----~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~lp~~~~~fD~Vi~~ 186 (394)
.+.++.+|||||||+|.++.. .+..+|+|+|+++.+++.|+++ +++++.+|+.......+.||+|++.
T Consensus 73 ~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~~~~~fD~I~~~ 152 (212)
T PRK13942 73 DLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYEENAPYDRIYVT 152 (212)
T ss_pred CCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCcCCCcCEEEEC
Confidence 457889999999999997531 3457999999999999999876 4789999998766567899999998
Q ss_pred hhhhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 016157 187 AVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 187 ~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~ 219 (394)
..+++++ ..+.+.|||||++++..
T Consensus 153 ~~~~~~~---------~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 153 AAGPDIP---------KPLIEQLKDGGIMVIPV 176 (212)
T ss_pred CCcccch---------HHHHHhhCCCcEEEEEE
Confidence 7765542 34667899999998875
|
|
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.4e-10 Score=105.25 Aligned_cols=96 Identities=14% Similarity=0.173 Sum_probs=75.4
Q ss_pred CCCCCCEEEEEcCccCcccc----cCCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeecCCCCCCCCCccEEEehh
Q 016157 119 SLPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFGDAAISIA 187 (394)
Q Consensus 119 ~l~~g~~VLDvGCG~G~~l~----~~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~lp~~~~~fD~Vi~~~ 187 (394)
.+.++.+|||+|||+|.++. ..+..+++|+|+++.+++.|+++ +++++.+|+.. ++ .+.||+|++..
T Consensus 28 ~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~-~~-~~~~D~v~~~~ 105 (187)
T PRK08287 28 ELHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPI-EL-PGKADAIFIGG 105 (187)
T ss_pred CCCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchh-hc-CcCCCEEEECC
Confidence 45678899999999999742 35678999999999999999864 46788888742 33 36799999976
Q ss_pred hhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCc
Q 016157 188 VLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAV 222 (394)
Q Consensus 188 vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~ 222 (394)
..++ ...+++.+.+.|+|||++++.....
T Consensus 106 ~~~~------~~~~l~~~~~~Lk~gG~lv~~~~~~ 134 (187)
T PRK08287 106 SGGN------LTAIIDWSLAHLHPGGRLVLTFILL 134 (187)
T ss_pred CccC------HHHHHHHHHHhcCCCeEEEEEEecH
Confidence 5443 4568899999999999998876543
|
|
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.3e-10 Score=107.94 Aligned_cols=92 Identities=24% Similarity=0.271 Sum_probs=73.5
Q ss_pred CCCCCCEEEEEcCccCccccc-----CCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeecCCCCCCCCCccEEEeh
Q 016157 119 SLPSGSLVLDAGCGNGKYLGL-----NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFGDAAISI 186 (394)
Q Consensus 119 ~l~~g~~VLDvGCG~G~~l~~-----~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~lp~~~~~fD~Vi~~ 186 (394)
.+.++.+|||||||+|.++.. .+...|+|+|+++.+++.|+++ +++++.+|+.........||+|++.
T Consensus 74 ~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~~~~fD~Ii~~ 153 (215)
T TIGR00080 74 ELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEPLAPYDRIYVT 153 (215)
T ss_pred CCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCcccCCCCEEEEc
Confidence 357889999999999997532 3345799999999999999876 5788999998755445789999988
Q ss_pred hhhhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 016157 187 AVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 187 ~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~ 219 (394)
....++ ...+.+.|||||++++..
T Consensus 154 ~~~~~~---------~~~~~~~L~~gG~lv~~~ 177 (215)
T TIGR00080 154 AAGPKI---------PEALIDQLKEGGILVMPV 177 (215)
T ss_pred CCcccc---------cHHHHHhcCcCcEEEEEE
Confidence 765554 345778999999999875
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.3e-10 Score=114.37 Aligned_cols=102 Identities=25% Similarity=0.304 Sum_probs=76.3
Q ss_pred CCCEEEEEcCccCccccc---CCCcEEEEEeCCHHHHHHHHHc-----------------CCeEEEeecCCCC----CC-
Q 016157 122 SGSLVLDAGCGNGKYLGL---NPDCFFVGCDISPSLIKICVDR-----------------GHEVLVADAVNLP----YR- 176 (394)
Q Consensus 122 ~g~~VLDvGCG~G~~l~~---~~~~~v~gvD~S~~~l~~a~~~-----------------~i~~~~~D~~~lp----~~- 176 (394)
++.+|||+|||-|..+.. ..-..++|+|+|...|+.|++| ...++.+|..... +.
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~ 141 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPP 141 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSS
T ss_pred CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccc
Confidence 788999999999987642 3445899999999999999876 1256777775421 23
Q ss_pred -CCCccEEEehhhhhh-cCChhHHHHHHHHHHhccccCcEEEEEEcCcc
Q 016157 177 -SDFGDAAISIAVLHH-LSTESRRKKAIEELVRVVKKGSLVLITVWAVE 223 (394)
Q Consensus 177 -~~~fD~Vi~~~vl~h-l~~~~~~~~~L~ei~r~LkpGG~lli~~~~~~ 223 (394)
...||+|-|..+||+ +.+.+....+|+.+.+.|||||+|+.+++..+
T Consensus 142 ~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d~~ 190 (331)
T PF03291_consen 142 RSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPDSD 190 (331)
T ss_dssp TTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HH
T ss_pred cCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecCHH
Confidence 359999999999998 56667778899999999999999999987643
|
The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A. |
| >KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.5e-10 Score=110.57 Aligned_cols=117 Identities=24% Similarity=0.343 Sum_probs=91.6
Q ss_pred ccchHHHHHHHcCCCCCCEEEEEcCccCccccc--CCC-cEEEEEeCCHHHHHHHHHc-------------CCeEEEeec
Q 016157 107 FAKWPKVATFLNSLPSGSLVLDAGCGNGKYLGL--NPD-CFFVGCDISPSLIKICVDR-------------GHEVLVADA 170 (394)
Q Consensus 107 ~~~~~~l~~~l~~l~~g~~VLDvGCG~G~~l~~--~~~-~~v~gvD~S~~~l~~a~~~-------------~i~~~~~D~ 170 (394)
...|-+-..+-...+++..+||+|||-|.-|.. ..+ ..++|+||+.-.++.|+++ ...|+.+|.
T Consensus 102 fNNwIKs~LI~~y~~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc 181 (389)
T KOG1975|consen 102 FNNWIKSVLINLYTKRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADC 181 (389)
T ss_pred hhHHHHHHHHHHHhccccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEecc
Confidence 344544443444567889999999999986643 233 3899999999999999987 257888987
Q ss_pred CC------CCCCCCCccEEEehhhhhh-cCChhHHHHHHHHHHhccccCcEEEEEEcCcc
Q 016157 171 VN------LPYRSDFGDAAISIAVLHH-LSTESRRKKAIEELVRVVKKGSLVLITVWAVE 223 (394)
Q Consensus 171 ~~------lp~~~~~fD~Vi~~~vl~h-l~~~~~~~~~L~ei~r~LkpGG~lli~~~~~~ 223 (394)
.. +++++.+||+|-|-+++|+ +.+.++...+|+++.+.|||||.|+-+.+..+
T Consensus 182 ~~~~l~d~~e~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPdsd 241 (389)
T KOG1975|consen 182 FKERLMDLLEFKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPDSD 241 (389)
T ss_pred chhHHHHhccCCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCcHH
Confidence 53 4455666999999999997 67777789999999999999999999987543
|
|
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=3e-10 Score=113.59 Aligned_cols=97 Identities=21% Similarity=0.202 Sum_probs=75.9
Q ss_pred CCEEEEEcCccCccc----ccCCCcEEEEEeCCHHHHHHHHHc----------CCeEEEeecCCCCCCCCCccEEEehhh
Q 016157 123 GSLVLDAGCGNGKYL----GLNPDCFFVGCDISPSLIKICVDR----------GHEVLVADAVNLPYRSDFGDAAISIAV 188 (394)
Q Consensus 123 g~~VLDvGCG~G~~l----~~~~~~~v~gvD~S~~~l~~a~~~----------~i~~~~~D~~~lp~~~~~fD~Vi~~~v 188 (394)
+.+|||+|||+|.+. ...|...|+++|+|+.+++.|+++ +++++..|+... +...+||+|+|+-.
T Consensus 229 ~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~-~~~~~fDlIlsNPP 307 (378)
T PRK15001 229 EGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSG-VEPFRFNAVLCNPP 307 (378)
T ss_pred CCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEcccccc-CCCCCEEEEEECcC
Confidence 469999999999964 346788999999999999999875 246777777543 23468999999877
Q ss_pred hhhcC--ChhHHHHHHHHHHhccccCcEEEEEEc
Q 016157 189 LHHLS--TESRRKKAIEELVRVVKKGSLVLITVW 220 (394)
Q Consensus 189 l~hl~--~~~~~~~~L~ei~r~LkpGG~lli~~~ 220 (394)
+|... +.....++++.+.++|+|||.|++...
T Consensus 308 fh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~n 341 (378)
T PRK15001 308 FHQQHALTDNVAWEMFHHARRCLKINGELYIVAN 341 (378)
T ss_pred cccCccCCHHHHHHHHHHHHHhcccCCEEEEEEe
Confidence 76432 222257899999999999999999863
|
|
| >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A | Back alignment and domain information |
|---|
Probab=99.14 E-value=5.6e-11 Score=98.85 Aligned_cols=97 Identities=27% Similarity=0.416 Sum_probs=76.3
Q ss_pred CCEEEEEcCccCcccc----cCCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeecCCCC--CCCCCccEEEehhh
Q 016157 123 GSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLP--YRSDFGDAAISIAV 188 (394)
Q Consensus 123 g~~VLDvGCG~G~~l~----~~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~lp--~~~~~fD~Vi~~~v 188 (394)
|.+|||+|||+|.++. .. ...++|+|+++..++.++.+ .++++++|+.+.. +.+++||+|+++-.
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~-~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP 79 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRG-AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPP 79 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHC-TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--S
T ss_pred CCEEEEcCcchHHHHHHHHHHC-CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCC
Confidence 5689999999999753 23 58999999999999999986 3689999998875 67899999999876
Q ss_pred hhhcCCh-----hHHHHHHHHHHhccccCcEEEEEEc
Q 016157 189 LHHLSTE-----SRRKKAIEELVRVVKKGSLVLITVW 220 (394)
Q Consensus 189 l~hl~~~-----~~~~~~L~ei~r~LkpGG~lli~~~ 220 (394)
....... .....+++++.++|||||.+++.++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 80 YGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITP 116 (117)
T ss_dssp TTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 6533211 1146889999999999999999875
|
... |
| >TIGR01177 conserved hypothetical protein TIGR01177 | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.6e-10 Score=112.64 Aligned_cols=105 Identities=26% Similarity=0.292 Sum_probs=82.7
Q ss_pred cCCCCCCEEEEEcCccCcccc--cCCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeecCCCCCCCCCccEEEehhh
Q 016157 118 NSLPSGSLVLDAGCGNGKYLG--LNPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFGDAAISIAV 188 (394)
Q Consensus 118 ~~l~~g~~VLDvGCG~G~~l~--~~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~lp~~~~~fD~Vi~~~v 188 (394)
..+++|.+|||+|||+|.++. ...+..++|+|+++.|++.|+.+ ++.++.+|+.++|+++++||+|++..-
T Consensus 178 ~~~~~g~~vLDp~cGtG~~lieaa~~~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~~~~~D~Iv~dPP 257 (329)
T TIGR01177 178 ARVTEGDRVLDPFCGTGGFLIEAGLMGAKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLSSESVDAIATDPP 257 (329)
T ss_pred hCCCCcCEEEECCCCCCHHHHHHHHhCCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcccCCCCEEEECCC
Confidence 356788999999999999753 24567999999999999988875 357899999999988889999999632
Q ss_pred hhh---cC---ChhHHHHHHHHHHhccccCcEEEEEEcCc
Q 016157 189 LHH---LS---TESRRKKAIEELVRVVKKGSLVLITVWAV 222 (394)
Q Consensus 189 l~h---l~---~~~~~~~~L~ei~r~LkpGG~lli~~~~~ 222 (394)
... .. .......+|+++.++|||||++++.....
T Consensus 258 yg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~ 297 (329)
T TIGR01177 258 YGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTR 297 (329)
T ss_pred CcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCC
Confidence 110 10 11225789999999999999999987654
|
This family is found exclusively in the Archaea. |
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=3.5e-10 Score=103.61 Aligned_cols=98 Identities=19% Similarity=0.234 Sum_probs=76.1
Q ss_pred CCCCCCEEEEEcCccCcccc----c-CCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeecCCC-CCCCCCccEEE
Q 016157 119 SLPSGSLVLDAGCGNGKYLG----L-NPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNL-PYRSDFGDAAI 184 (394)
Q Consensus 119 ~l~~g~~VLDvGCG~G~~l~----~-~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~l-p~~~~~fD~Vi 184 (394)
.+.++.+|||+|||+|.++. . .+..+|+++|+++.+++.++++ ++.++.+|+.+. +...+.||+|+
T Consensus 37 ~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~ 116 (198)
T PRK00377 37 RLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKFDRIF 116 (198)
T ss_pred CCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCCCEEE
Confidence 46788999999999998742 2 3557999999999999988765 357788888763 33346899999
Q ss_pred ehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCc
Q 016157 185 SIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAV 222 (394)
Q Consensus 185 ~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~ 222 (394)
+... ... +..+++++.++|||||++++.....
T Consensus 117 ~~~~---~~~---~~~~l~~~~~~LkpgG~lv~~~~~~ 148 (198)
T PRK00377 117 IGGG---SEK---LKEIISASWEIIKKGGRIVIDAILL 148 (198)
T ss_pred ECCC---ccc---HHHHHHHHHHHcCCCcEEEEEeecH
Confidence 8542 222 6789999999999999999866543
|
|
| >PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.3e-10 Score=115.95 Aligned_cols=98 Identities=20% Similarity=0.297 Sum_probs=78.1
Q ss_pred CCCEEEEEcCccCcccc----cCCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeecCCC--CCCCCCccEEEehhh
Q 016157 122 SGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNL--PYRSDFGDAAISIAV 188 (394)
Q Consensus 122 ~g~~VLDvGCG~G~~l~----~~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~l--p~~~~~fD~Vi~~~v 188 (394)
.+..+||||||+|.++. ..|+..++|+|++..+++.|.++ ++.++++|+..+ .++++++|.|+++..
T Consensus 122 ~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~lnFP 201 (390)
T PRK14121 122 QEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSNSVEKIFVHFP 201 (390)
T ss_pred CCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCceeEEEEeCC
Confidence 45689999999999753 36888999999999999888765 678999998764 467899999998655
Q ss_pred hhhcCChhH---HHHHHHHHHhccccCcEEEEEE
Q 016157 189 LHHLSTESR---RKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 189 l~hl~~~~~---~~~~L~ei~r~LkpGG~lli~~ 219 (394)
..|.....| ...+|.++.|+|+|||.+.+.+
T Consensus 202 dPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~T 235 (390)
T PRK14121 202 VPWDKKPHRRVISEDFLNEALRVLKPGGTLELRT 235 (390)
T ss_pred CCccccchhhccHHHHHHHHHHHcCCCcEEEEEE
Confidence 443322111 1589999999999999999986
|
|
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=6e-10 Score=110.49 Aligned_cols=97 Identities=24% Similarity=0.255 Sum_probs=76.7
Q ss_pred CCEEEEEcCccCcccc----cCCCcEEEEEeCCHHHHHHHHHc----C--CeEEEeecCCCCCCCCCccEEEehhhhhhc
Q 016157 123 GSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR----G--HEVLVADAVNLPYRSDFGDAAISIAVLHHL 192 (394)
Q Consensus 123 g~~VLDvGCG~G~~l~----~~~~~~v~gvD~S~~~l~~a~~~----~--i~~~~~D~~~lp~~~~~fD~Vi~~~vl~hl 192 (394)
..+|||+|||+|.+.. ..+...++++|+|+.+++.|+++ + .+++.+|+... ..+.||+|+++..+|+.
T Consensus 197 ~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~~--~~~~fDlIvsNPPFH~g 274 (342)
T PRK09489 197 KGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLEGEVFASNVFSD--IKGRFDMIISNPPFHDG 274 (342)
T ss_pred CCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEcccccc--cCCCccEEEECCCccCC
Confidence 4589999999998742 35778999999999999999875 3 45677777652 25789999999988863
Q ss_pred CC--hhHHHHHHHHHHhccccCcEEEEEEcC
Q 016157 193 ST--ESRRKKAIEELVRVVKKGSLVLITVWA 221 (394)
Q Consensus 193 ~~--~~~~~~~L~ei~r~LkpGG~lli~~~~ 221 (394)
.. ......+|+++.++|||||.++|..-.
T Consensus 275 ~~~~~~~~~~~i~~a~~~LkpgG~L~iVan~ 305 (342)
T PRK09489 275 IQTSLDAAQTLIRGAVRHLNSGGELRIVANA 305 (342)
T ss_pred ccccHHHHHHHHHHHHHhcCcCCEEEEEEeC
Confidence 22 223688999999999999999998643
|
|
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=99.11 E-value=3.4e-10 Score=109.80 Aligned_cols=97 Identities=20% Similarity=0.191 Sum_probs=72.9
Q ss_pred CCCCCEEEEEcCccCcccc---cCCCcEEEEEeCCHHHHHHHHHc----C----CeEEEeecCCCCCCCCCccEEEehhh
Q 016157 120 LPSGSLVLDAGCGNGKYLG---LNPDCFFVGCDISPSLIKICVDR----G----HEVLVADAVNLPYRSDFGDAAISIAV 188 (394)
Q Consensus 120 l~~g~~VLDvGCG~G~~l~---~~~~~~v~gvD~S~~~l~~a~~~----~----i~~~~~D~~~lp~~~~~fD~Vi~~~v 188 (394)
..++.+|||+|||+|.++. ......|+|+|+++.+++.|+++ + +.+...+.. +..++.||+|+++..
T Consensus 157 ~~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~--~~~~~~fDlVvan~~ 234 (288)
T TIGR00406 157 DLKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLE--QPIEGKADVIVANIL 234 (288)
T ss_pred cCCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccc--cccCCCceEEEEecC
Confidence 4578899999999998642 23334899999999999999886 2 234444422 334678999999865
Q ss_pred hhhcCChhHHHHHHHHHHhccccCcEEEEEEcCccc
Q 016157 189 LHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQ 224 (394)
Q Consensus 189 l~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~~~ 224 (394)
.++ ...++.++.++|||||.++++.+..++
T Consensus 235 ~~~------l~~ll~~~~~~LkpgG~li~sgi~~~~ 264 (288)
T TIGR00406 235 AEV------IKELYPQFSRLVKPGGWLILSGILETQ 264 (288)
T ss_pred HHH------HHHHHHHHHHHcCCCcEEEEEeCcHhH
Confidence 433 467899999999999999998765443
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >PHA03411 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=5.7e-10 Score=106.28 Aligned_cols=132 Identities=15% Similarity=0.083 Sum_probs=92.6
Q ss_pred HHHHHHHHHHhhccccccccccchHHHHHHHcCCCCCCEEEEEcCccCcccc----cCCCcEEEEEeCCHHHHHHHHHc-
Q 016157 87 EKKYVHRVYDAIAPHFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR- 161 (394)
Q Consensus 87 ~~~~v~~~Yd~~a~~y~~~~~~~~~~l~~~l~~l~~g~~VLDvGCG~G~~l~----~~~~~~v~gvD~S~~~l~~a~~~- 161 (394)
+++.|.+.|....-+-...-+.+..-+..++....++.+|||+|||+|.+.. ..++.+++|+|+++.|++.|+++
T Consensus 29 ~~~~v~~~~~g~~~~~~G~FfTP~~i~~~f~~~~~~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~ 108 (279)
T PHA03411 29 EKEFCYNNYHGDGLGGSGAFFTPEGLAWDFTIDAHCTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL 108 (279)
T ss_pred cHHHHHHhcccccccCceeEcCCHHHHHHHHhccccCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC
Confidence 5666666665542111111123333333444444456799999999998743 23457999999999999999987
Q ss_pred -CCeEEEeecCCCCCCCCCccEEEehhhhhhcCChhH-----------------HHHHHHHHHhccccCcEEEEEE
Q 016157 162 -GHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESR-----------------RKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 162 -~i~~~~~D~~~lp~~~~~fD~Vi~~~vl~hl~~~~~-----------------~~~~L~ei~r~LkpGG~lli~~ 219 (394)
+++++++|+.++.. ..+||+|+++-.++|+...++ ..+.+....++|+|+|.+++..
T Consensus 109 ~~v~~v~~D~~e~~~-~~kFDlIIsNPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~y 183 (279)
T PHA03411 109 PEAEWITSDVFEFES-NEKFDVVISNPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAY 183 (279)
T ss_pred cCCEEEECchhhhcc-cCCCcEEEEcCCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEE
Confidence 68999999998753 568999999988888654321 2467788889999999887774
|
|
| >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases | Back alignment and domain information |
|---|
Probab=99.09 E-value=3.8e-10 Score=100.98 Aligned_cols=99 Identities=24% Similarity=0.342 Sum_probs=75.7
Q ss_pred CCCEEEEEcCccCccc----ccCCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeecCCCCCCCCCccEEEehhhhh
Q 016157 122 SGSLVLDAGCGNGKYL----GLNPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFGDAAISIAVLH 190 (394)
Q Consensus 122 ~g~~VLDvGCG~G~~l----~~~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~lp~~~~~fD~Vi~~~vl~ 190 (394)
++.+|||+|||+|.+. ...+...|+++|+++.+++.++++ +++++..|+.+. ...+.||+|+++--++
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~-~~~~~fD~Iv~NPP~~ 109 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEA-LPDGKFDLIVSNPPFH 109 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTT-CCTTCEEEEEE---SB
T ss_pred cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCcccccccccccccc-ccccceeEEEEccchh
Confidence 5679999999999863 346777899999999999999876 267888898763 3378999999987655
Q ss_pred hcCC--hhHHHHHHHHHHhccccCcEEEEEEcC
Q 016157 191 HLST--ESRRKKAIEELVRVVKKGSLVLITVWA 221 (394)
Q Consensus 191 hl~~--~~~~~~~L~ei~r~LkpGG~lli~~~~ 221 (394)
.-.. ..-...++++..++|||||.+++..-.
T Consensus 110 ~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~~ 142 (170)
T PF05175_consen 110 AGGDDGLDLLRDFIEQARRYLKPGGRLFLVINS 142 (170)
T ss_dssp TTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEET
T ss_pred cccccchhhHHHHHHHHHHhccCCCEEEEEeec
Confidence 4332 122688999999999999999876543
|
; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A .... |
| >KOG1271 consensus Methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.07 E-value=2.7e-10 Score=100.85 Aligned_cols=139 Identities=19% Similarity=0.285 Sum_probs=97.8
Q ss_pred HHHHHHHHHHHhhccccccccc--cch------HHHHHHHc------CCCCCC-EEEEEcCccCccccc--CCC--cEEE
Q 016157 86 LEKKYVHRVYDAIAPHFSSTRF--AKW------PKVATFLN------SLPSGS-LVLDAGCGNGKYLGL--NPD--CFFV 146 (394)
Q Consensus 86 ~~~~~v~~~Yd~~a~~y~~~~~--~~~------~~l~~~l~------~l~~g~-~VLDvGCG~G~~l~~--~~~--~~v~ 146 (394)
..++|+.+.|+.--..|..... ..| .++..++. .+...+ +|||+|||+|.++.. ..+ ...+
T Consensus 16 GtK~yWD~~Y~~El~Nfr~hgd~GEvWFg~~ae~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~ 95 (227)
T KOG1271|consen 16 GTKSYWDAAYELELTNFREHGDEGEVWFGEDAEERIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGFQSKLT 95 (227)
T ss_pred chHHHHHHHHHHHHhhcccCCCccceecCCcHHHHHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhcCCCCcc
Confidence 3577888888886666653221 111 12222222 123333 999999999998742 222 2589
Q ss_pred EEeCCHHHHHHHHHc--------CCeEEEeecCCCCCCCCCccEEEehhhhhhcC-----ChhHHHHHHHHHHhccccCc
Q 016157 147 GCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISIAVLHHLS-----TESRRKKAIEELVRVVKKGS 213 (394)
Q Consensus 147 gvD~S~~~l~~a~~~--------~i~~~~~D~~~lp~~~~~fD~Vi~~~vl~hl~-----~~~~~~~~L~ei~r~LkpGG 213 (394)
|+|.|+.+++.|+.. .|+|.+.|+....+..+.||+|+--..+..++ ...|+...+..+.+.|+|||
T Consensus 96 GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~g 175 (227)
T KOG1271|consen 96 GVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKGTLDAISLSPDGPVGRLVVYLDSVEKLLSPGG 175 (227)
T ss_pred ccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEeecCceeeeecCCCCcccceeeehhhHhhccCCCc
Confidence 999999999998764 28999999999878889999998876665542 12345778999999999999
Q ss_pred EEEEEEcCccc
Q 016157 214 LVLITVWAVEQ 224 (394)
Q Consensus 214 ~lli~~~~~~~ 224 (394)
+|+|+..+..+
T Consensus 176 ifvItSCN~T~ 186 (227)
T KOG1271|consen 176 IFVITSCNFTK 186 (227)
T ss_pred EEEEEecCccH
Confidence 99999765543
|
|
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=9.6e-10 Score=100.49 Aligned_cols=98 Identities=18% Similarity=0.221 Sum_probs=74.0
Q ss_pred CCCCCCEEEEEcCccCcccc----cCCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeecCC-CCCCCCCccEEEeh
Q 016157 119 SLPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVN-LPYRSDFGDAAISI 186 (394)
Q Consensus 119 ~l~~g~~VLDvGCG~G~~l~----~~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~-lp~~~~~fD~Vi~~ 186 (394)
.+.++.+|||+|||+|.++. ..++..++|+|+++.+++.++++ +++++.+|+.+ ++.....+|.++..
T Consensus 37 ~~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~d~v~~~ 116 (196)
T PRK07402 37 RLEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAPAPDRVCIE 116 (196)
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCCCCCCEEEEE
Confidence 35678899999999999732 35678999999999999998875 46888888864 22222345776553
Q ss_pred hhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCcc
Q 016157 187 AVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVE 223 (394)
Q Consensus 187 ~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~~ 223 (394)
. ... ...+++++.++|+|||++++..+..+
T Consensus 117 ~----~~~---~~~~l~~~~~~LkpgG~li~~~~~~~ 146 (196)
T PRK07402 117 G----GRP---IKEILQAVWQYLKPGGRLVATASSLE 146 (196)
T ss_pred C----CcC---HHHHHHHHHHhcCCCeEEEEEeecHH
Confidence 2 112 57899999999999999999987643
|
|
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.3e-09 Score=97.97 Aligned_cols=101 Identities=22% Similarity=0.264 Sum_probs=75.7
Q ss_pred CCCCEEEEEcCccCccccc--CCCcEEEEEeCCHHHHHHHHHc-------C--CeEEEeecCCCCCCCCCccEEEehhhh
Q 016157 121 PSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR-------G--HEVLVADAVNLPYRSDFGDAAISIAVL 189 (394)
Q Consensus 121 ~~g~~VLDvGCG~G~~l~~--~~~~~v~gvD~S~~~l~~a~~~-------~--i~~~~~D~~~lp~~~~~fD~Vi~~~vl 189 (394)
.++.+|||+|||+|.++.. ..+.+++|+|+|+.+++.++++ + +.++.+|+.+. +.+..||+|+++..+
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~d~vi~n~p~ 100 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKNGKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEP-FRGDKFDVILFNPPY 100 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhhcceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEecccccc-ccccCceEEEECCCc
Confidence 5678999999999997432 2367999999999999998664 1 77888888763 445689999986543
Q ss_pred hhcC------------------ChhHHHHHHHHHHhccccCcEEEEEEcCc
Q 016157 190 HHLS------------------TESRRKKAIEELVRVVKKGSLVLITVWAV 222 (394)
Q Consensus 190 ~hl~------------------~~~~~~~~L~ei~r~LkpGG~lli~~~~~ 222 (394)
.+.. .......+++++.++|||||.+++.....
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~ 151 (188)
T PRK14968 101 LPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSL 151 (188)
T ss_pred CCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEccc
Confidence 2211 11224678999999999999998876543
|
|
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.5e-09 Score=102.38 Aligned_cols=97 Identities=27% Similarity=0.374 Sum_probs=73.8
Q ss_pred CCCEEEEEcCccCcccc----cCCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeecCCCCCCCCCccEEEehhh--
Q 016157 122 SGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFGDAAISIAV-- 188 (394)
Q Consensus 122 ~g~~VLDvGCG~G~~l~----~~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~lp~~~~~fD~Vi~~~v-- 188 (394)
.+.+|||+|||+|.++. ..+...++|+|+++.+++.|+++ ++.++.+|+.+ ++.+++||+|+++-.
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~-~~~~~~fD~Vi~npPy~ 165 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFE-PLPGGKFDLIVSNPPYI 165 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhc-cCcCCceeEEEECCCCC
Confidence 34589999999999743 35677999999999999999875 37889999876 455789999998532
Q ss_pred ----hhhcCChhH-----------------HHHHHHHHHhccccCcEEEEEE
Q 016157 189 ----LHHLSTESR-----------------RKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 189 ----l~hl~~~~~-----------------~~~~L~ei~r~LkpGG~lli~~ 219 (394)
++++....+ ...+++++.++|+|||.+++..
T Consensus 166 ~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~ 217 (251)
T TIGR03534 166 PEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEI 217 (251)
T ss_pred chhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 222222110 2467899999999999999864
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. |
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.1e-09 Score=86.71 Aligned_cols=92 Identities=36% Similarity=0.509 Sum_probs=75.4
Q ss_pred EEEEEcCccCccccc---CCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeecCCCCC-CCCCccEEEehhhhhhcC
Q 016157 125 LVLDAGCGNGKYLGL---NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPY-RSDFGDAAISIAVLHHLS 193 (394)
Q Consensus 125 ~VLDvGCG~G~~l~~---~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~lp~-~~~~fD~Vi~~~vl~hl~ 193 (394)
+|||+|||+|.++.. .....++++|+++.++..+++. .+.++..|+.+... ..+.||+|++..+++++
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~- 79 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHHL- 79 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceeeh-
Confidence 489999999997532 3567999999999999888722 46888899888654 56789999999999884
Q ss_pred ChhHHHHHHHHHHhccccCcEEEEE
Q 016157 194 TESRRKKAIEELVRVVKKGSLVLIT 218 (394)
Q Consensus 194 ~~~~~~~~L~ei~r~LkpGG~lli~ 218 (394)
......+++.+.+.|+|||.+++.
T Consensus 80 -~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 80 -VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred -hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 222789999999999999999886
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.6e-09 Score=100.18 Aligned_cols=93 Identities=18% Similarity=0.115 Sum_probs=72.2
Q ss_pred CCCCCCEEEEEcCccCccccc--CCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeecCCCCCCCCCccEEEehhhh
Q 016157 119 SLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFGDAAISIAVL 189 (394)
Q Consensus 119 ~l~~g~~VLDvGCG~G~~l~~--~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~lp~~~~~fD~Vi~~~vl 189 (394)
.+.++.+|||+|||+|.++.. .....++++|+++.+++.|+++ ++++..+|........+.||+|++...+
T Consensus 75 ~~~~~~~VLeiG~GsG~~t~~la~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~~~~~~ 154 (212)
T PRK00312 75 ELKPGDRVLEIGTGSGYQAAVLAHLVRRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWPAYAPFDRILVTAAA 154 (212)
T ss_pred CCCCCCEEEEECCCccHHHHHHHHHhCEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCCcCCCcCEEEEccCc
Confidence 456788999999999986432 1124899999999999999875 4788899986533334789999998876
Q ss_pred hhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 016157 190 HHLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (394)
Q Consensus 190 ~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~ 220 (394)
+++ .+.+.+.|+|||++++...
T Consensus 155 ~~~---------~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 155 PEI---------PRALLEQLKEGGILVAPVG 176 (212)
T ss_pred hhh---------hHHHHHhcCCCcEEEEEEc
Confidence 655 2346789999999999875
|
|
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=9.8e-10 Score=102.54 Aligned_cols=101 Identities=16% Similarity=0.079 Sum_probs=73.8
Q ss_pred CCCCCEEEEEcCccCccccc---CCCcEEEEEeCCHHHHHHHHHc------CCeEEEeecCCCCCCCCCccEEEehhhhh
Q 016157 120 LPSGSLVLDAGCGNGKYLGL---NPDCFFVGCDISPSLIKICVDR------GHEVLVADAVNLPYRSDFGDAAISIAVLH 190 (394)
Q Consensus 120 l~~g~~VLDvGCG~G~~l~~---~~~~~v~gvD~S~~~l~~a~~~------~i~~~~~D~~~lp~~~~~fD~Vi~~~vl~ 190 (394)
+.++.+|||+|||+|.++.. ....+++|+|+++.+++.++++ ++.++.+|+... ++++.||+|+++....
T Consensus 34 ~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~-~~~~~fD~Vi~npPy~ 112 (223)
T PRK14967 34 LGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARA-VEFRPFDVVVSNPPYV 112 (223)
T ss_pred cCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhh-ccCCCeeEEEECCCCC
Confidence 46778999999999997432 2224899999999999988775 356788888763 4567899999974322
Q ss_pred hcCC------------------hhHHHHHHHHHHhccccCcEEEEEEcC
Q 016157 191 HLST------------------ESRRKKAIEELVRVVKKGSLVLITVWA 221 (394)
Q Consensus 191 hl~~------------------~~~~~~~L~ei~r~LkpGG~lli~~~~ 221 (394)
.-.. ......+++++.++|||||++++..-.
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~ 161 (223)
T PRK14967 113 PAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSE 161 (223)
T ss_pred CCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEec
Confidence 1110 011456888999999999999987543
|
|
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.00 E-value=6.6e-10 Score=105.58 Aligned_cols=94 Identities=23% Similarity=0.313 Sum_probs=67.5
Q ss_pred CCCCCEEEEEcCccCccccc---CCCcEEEEEeCCHHHHHHHHHc----CCeEEEeecCCCCCCCCCccEEEehhhhhhc
Q 016157 120 LPSGSLVLDAGCGNGKYLGL---NPDCFFVGCDISPSLIKICVDR----GHEVLVADAVNLPYRSDFGDAAISIAVLHHL 192 (394)
Q Consensus 120 l~~g~~VLDvGCG~G~~l~~---~~~~~v~gvD~S~~~l~~a~~~----~i~~~~~D~~~lp~~~~~fD~Vi~~~vl~hl 192 (394)
+.++.+|||+|||+|.++.. .....++|+|+|+.+++.|+++ ++. +...++..+.+||+|+++...+.
T Consensus 117 ~~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~~~----~~~~~~~~~~~fD~Vvani~~~~- 191 (250)
T PRK00517 117 VLPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGVE----LNVYLPQGDLKADVIVANILANP- 191 (250)
T ss_pred cCCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCC----ceEEEccCCCCcCEEEEcCcHHH-
Confidence 45788999999999986421 2223699999999999999876 331 11112222237999998754322
Q ss_pred CChhHHHHHHHHHHhccccCcEEEEEEcCcc
Q 016157 193 STESRRKKAIEELVRVVKKGSLVLITVWAVE 223 (394)
Q Consensus 193 ~~~~~~~~~L~ei~r~LkpGG~lli~~~~~~ 223 (394)
...++.++.++|||||+++++.+..+
T Consensus 192 -----~~~l~~~~~~~LkpgG~lilsgi~~~ 217 (250)
T PRK00517 192 -----LLELAPDLARLLKPGGRLILSGILEE 217 (250)
T ss_pred -----HHHHHHHHHHhcCCCcEEEEEECcHh
Confidence 46789999999999999999876543
|
|
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.4e-09 Score=103.08 Aligned_cols=96 Identities=17% Similarity=0.223 Sum_probs=73.1
Q ss_pred CCCCCCEEEEEcCccCccccc-----CCCcEEEEEeCCHH----HHHHHHHc-CCeEEEeecCCC---CCCCCCccEEEe
Q 016157 119 SLPSGSLVLDAGCGNGKYLGL-----NPDCFFVGCDISPS----LIKICVDR-GHEVLVADAVNL---PYRSDFGDAAIS 185 (394)
Q Consensus 119 ~l~~g~~VLDvGCG~G~~l~~-----~~~~~v~gvD~S~~----~l~~a~~~-~i~~~~~D~~~l---p~~~~~fD~Vi~ 185 (394)
.+.++.+|||+|||+|.++.. .+...|+++|+++. |++.++++ ++.++.+|+... ....++||+|++
T Consensus 129 ~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~~p~~y~~~~~~vDvV~~ 208 (293)
T PTZ00146 129 PIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDARYPQKYRMLVPMVDVIFA 208 (293)
T ss_pred ccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCCEEEECCccChhhhhcccCCCCEEEE
Confidence 367899999999999997542 34568999999986 56766654 899999998642 223458999998
Q ss_pred hhhhhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 016157 186 IAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 186 ~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~ 219 (394)
... .++ +...++.++.++|||||.|+|..
T Consensus 209 Dva---~pd--q~~il~~na~r~LKpGG~~vI~i 237 (293)
T PTZ00146 209 DVA---QPD--QARIVALNAQYFLKNGGHFIISI 237 (293)
T ss_pred eCC---Ccc--hHHHHHHHHHHhccCCCEEEEEE
Confidence 764 122 25577789999999999999953
|
|
| >PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.97 E-value=9.1e-10 Score=101.78 Aligned_cols=92 Identities=25% Similarity=0.283 Sum_probs=70.0
Q ss_pred CCCCCEEEEEcCccCccccc-----CCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeecCCCCCCCCCccEEEehh
Q 016157 120 LPSGSLVLDAGCGNGKYLGL-----NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFGDAAISIA 187 (394)
Q Consensus 120 l~~g~~VLDvGCG~G~~l~~-----~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~lp~~~~~fD~Vi~~~ 187 (394)
++||.+|||||||+|+++.. .+...|+++|+.+.+++.|+++ ++.++.+|..........||.|++.+
T Consensus 70 l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~~~apfD~I~v~~ 149 (209)
T PF01135_consen 70 LKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGWPEEAPFDRIIVTA 149 (209)
T ss_dssp C-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTGGG-SEEEEEESS
T ss_pred cCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhccccCCCcCEEEEee
Confidence 78999999999999997542 4556899999999999999887 67899999876444467899999998
Q ss_pred hhhhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 016157 188 VLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (394)
Q Consensus 188 vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~ 220 (394)
....++ ..+.+.||+||++++-.-
T Consensus 150 a~~~ip---------~~l~~qL~~gGrLV~pi~ 173 (209)
T PF01135_consen 150 AVPEIP---------EALLEQLKPGGRLVAPIG 173 (209)
T ss_dssp BBSS-----------HHHHHTEEEEEEEEEEES
T ss_pred ccchHH---------HHHHHhcCCCcEEEEEEc
Confidence 776553 236677999999999764
|
1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A .... |
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Probab=98.93 E-value=3.9e-09 Score=102.18 Aligned_cols=98 Identities=15% Similarity=0.164 Sum_probs=73.0
Q ss_pred CCCEEEEEcCccCcccc----cCCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeecCCCCCCCCCccEEEehh--
Q 016157 122 SGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISIA-- 187 (394)
Q Consensus 122 ~g~~VLDvGCG~G~~l~----~~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~lp~~~~~fD~Vi~~~-- 187 (394)
++.+|||+|||+|.++. ..++..++|+|+|+.+++.|+++ ++.++.+|+.+. +++++||+|+++-
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~-~~~~~fD~Iv~NPPy 199 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAA-LPGRKYDLIVSNPPY 199 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhc-cCCCCccEEEECCCC
Confidence 45689999999998742 35678999999999999999876 267899998652 3456899999961
Q ss_pred ----hhhhcCC-----h-----------hHHHHHHHHHHhccccCcEEEEEEc
Q 016157 188 ----VLHHLST-----E-----------SRRKKAIEELVRVVKKGSLVLITVW 220 (394)
Q Consensus 188 ----vl~hl~~-----~-----------~~~~~~L~ei~r~LkpGG~lli~~~ 220 (394)
.+.++.. + +....+++++.++|+|||++++...
T Consensus 200 ~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g 252 (284)
T TIGR03533 200 VDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVG 252 (284)
T ss_pred CCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 1111110 0 1136778999999999999998764
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. |
| >PRK14904 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=5.4e-09 Score=107.44 Aligned_cols=111 Identities=20% Similarity=0.223 Sum_probs=81.3
Q ss_pred HHcCCCCCCEEEEEcCccCccc----cc-CCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeecCCCCCCCCCccEE
Q 016157 116 FLNSLPSGSLVLDAGCGNGKYL----GL-NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFGDAA 183 (394)
Q Consensus 116 ~l~~l~~g~~VLDvGCG~G~~l----~~-~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~lp~~~~~fD~V 183 (394)
.+..+.+|.+|||+|||+|..+ .. ..+..|+|+|+|+.+++.++++ +++++.+|+..++ ++++||+|
T Consensus 244 ~~l~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~-~~~~fD~V 322 (445)
T PRK14904 244 LLLNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFS-PEEQPDAI 322 (445)
T ss_pred HhcCCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccc-cCCCCCEE
Confidence 3345668899999999999743 22 3456999999999999998876 3678899998875 45789999
Q ss_pred Eeh------hhhhh------cCChh-------HHHHHHHHHHhccccCcEEEEEEcCccchhh
Q 016157 184 ISI------AVLHH------LSTES-------RRKKAIEELVRVVKKGSLVLITVWAVEQEDK 227 (394)
Q Consensus 184 i~~------~vl~h------l~~~~-------~~~~~L~ei~r~LkpGG~lli~~~~~~~~~~ 227 (394)
++- .++.. ..+.+ ....+|.++.++|||||++++.+.+...+++
T Consensus 323 l~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~~~En 385 (445)
T PRK14904 323 LLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIEPEEN 385 (445)
T ss_pred EEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhH
Confidence 962 12211 11111 1346899999999999999999988765543
|
|
| >TIGR00536 hemK_fam HemK family putative methylases | Back alignment and domain information |
|---|
Probab=98.92 E-value=5.5e-09 Score=101.16 Aligned_cols=97 Identities=19% Similarity=0.226 Sum_probs=73.5
Q ss_pred CEEEEEcCccCcccc----cCCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeecCCCCCCCCCccEEEeh-----
Q 016157 124 SLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISI----- 186 (394)
Q Consensus 124 ~~VLDvGCG~G~~l~----~~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~lp~~~~~fD~Vi~~----- 186 (394)
.+|||+|||+|.++. ..++..++|+|+|+.+++.|+++ .++++++|+.+ ++....||+|+++
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~-~~~~~~fDlIvsNPPyi~ 194 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFE-PLAGQKIDIIVSNPPYID 194 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhc-cCcCCCccEEEECCCCCC
Confidence 689999999998642 35678999999999999999886 27889999876 3444589999996
Q ss_pred --------hhhhhcCC---------hhHHHHHHHHHHhccccCcEEEEEEcC
Q 016157 187 --------AVLHHLST---------ESRRKKAIEELVRVVKKGSLVLITVWA 221 (394)
Q Consensus 187 --------~vl~hl~~---------~~~~~~~L~ei~r~LkpGG~lli~~~~ 221 (394)
.++.|-+. ......++.++.++|+|||.+++....
T Consensus 195 ~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~ 246 (284)
T TIGR00536 195 EEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGN 246 (284)
T ss_pred cchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECc
Confidence 12233221 012567899999999999999887643
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. |
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=4.1e-09 Score=100.92 Aligned_cols=104 Identities=15% Similarity=0.289 Sum_probs=77.8
Q ss_pred CCCCCEEEEEcCccCcccc----cCCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeecCCC-CCCCCCccEEEeh
Q 016157 120 LPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNL-PYRSDFGDAAISI 186 (394)
Q Consensus 120 l~~g~~VLDvGCG~G~~l~----~~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~l-p~~~~~fD~Vi~~ 186 (394)
.+++.+|||||||+|.++. ..++..++++|+++.+++.|++. +++++.+|+.+. .-..++||+|++.
T Consensus 64 ~~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D 143 (262)
T PRK04457 64 NPRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVD 143 (262)
T ss_pred CCCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEe
Confidence 4456799999999999753 46788999999999999999975 367889998653 2224689999975
Q ss_pred hhh-hhcCChhHHHHHHHHHHhccccCcEEEEEEcCcc
Q 016157 187 AVL-HHLSTESRRKKAIEELVRVVKKGSLVLITVWAVE 223 (394)
Q Consensus 187 ~vl-~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~~ 223 (394)
..- ...+.......+++++.++|+|||++++..|...
T Consensus 144 ~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~~~~ 181 (262)
T PRK04457 144 GFDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLWSRD 181 (262)
T ss_pred CCCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcCCCc
Confidence 311 1111111136899999999999999999887654
|
|
| >PRK10901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=8.8e-09 Score=105.31 Aligned_cols=108 Identities=22% Similarity=0.295 Sum_probs=79.8
Q ss_pred CCCCCCEEEEEcCccCcccc----cCCCcEEEEEeCCHHHHHHHHHc------CCeEEEeecCCCC--CCCCCccEEEeh
Q 016157 119 SLPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR------GHEVLVADAVNLP--YRSDFGDAAISI 186 (394)
Q Consensus 119 ~l~~g~~VLDvGCG~G~~l~----~~~~~~v~gvD~S~~~l~~a~~~------~i~~~~~D~~~lp--~~~~~fD~Vi~~ 186 (394)
.+.+|.+|||+|||+|..+. ..++..|+|+|+++.+++.++++ ++.++.+|+..++ +..++||.|++.
T Consensus 241 ~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D 320 (427)
T PRK10901 241 APQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQPFDRILLD 320 (427)
T ss_pred CCCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccCCCCEEEEC
Confidence 46788999999999998642 24447999999999999999876 3578899998764 345789999953
Q ss_pred h------hhh------hcCChhH-------HHHHHHHHHhccccCcEEEEEEcCccchh
Q 016157 187 A------VLH------HLSTESR-------RKKAIEELVRVVKKGSLVLITVWAVEQED 226 (394)
Q Consensus 187 ~------vl~------hl~~~~~-------~~~~L~ei~r~LkpGG~lli~~~~~~~~~ 226 (394)
. ++. +....+. ...+|..+.++|||||++++++.+....+
T Consensus 321 ~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~E 379 (427)
T PRK10901 321 APCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSILPEE 379 (427)
T ss_pred CCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhh
Confidence 2 221 1111111 24789999999999999999987665443
|
|
| >PRK14903 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=5.2e-09 Score=107.04 Aligned_cols=114 Identities=22% Similarity=0.294 Sum_probs=84.1
Q ss_pred HHHHcCCCCCCEEEEEcCccCccc----cc-CCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeecCCCC-CCCCCc
Q 016157 114 ATFLNSLPSGSLVLDAGCGNGKYL----GL-NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLP-YRSDFG 180 (394)
Q Consensus 114 ~~~l~~l~~g~~VLDvGCG~G~~l----~~-~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~lp-~~~~~f 180 (394)
...+..+.+|.+|||+|||+|..+ .. .++..|+++|+++.+++.++++ +++++++|+..++ +..++|
T Consensus 229 ~~~~l~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~~~~f 308 (431)
T PRK14903 229 VPLLMELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYVQDTF 308 (431)
T ss_pred HHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhhhccC
Confidence 333446778899999999999753 22 3567999999999999999876 3578889988776 446789
Q ss_pred cEEEeh------hhhhhcCCh-------------hHHHHHHHHHHhccccCcEEEEEEcCccchhh
Q 016157 181 DAAISI------AVLHHLSTE-------------SRRKKAIEELVRVVKKGSLVLITVWAVEQEDK 227 (394)
Q Consensus 181 D~Vi~~------~vl~hl~~~-------------~~~~~~L~ei~r~LkpGG~lli~~~~~~~~~~ 227 (394)
|.|++. +++..-++. ....++|.++.+.|||||.++.++.+...+++
T Consensus 309 D~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~eEn 374 (431)
T PRK14903 309 DRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVTKEEN 374 (431)
T ss_pred CEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCChhhC
Confidence 999862 222211110 01367799999999999999999988766554
|
|
| >PRK14901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=7.4e-09 Score=106.09 Aligned_cols=109 Identities=20% Similarity=0.237 Sum_probs=82.8
Q ss_pred cCCCCCCEEEEEcCccCcccc----c-CCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeecCCCC----CCCCCcc
Q 016157 118 NSLPSGSLVLDAGCGNGKYLG----L-NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLP----YRSDFGD 181 (394)
Q Consensus 118 ~~l~~g~~VLDvGCG~G~~l~----~-~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~lp----~~~~~fD 181 (394)
..+.+|.+|||+|||+|..+. . .....|+++|+++.+++.++++ ++.++.+|+..++ +..++||
T Consensus 248 l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~~fD 327 (434)
T PRK14901 248 LDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQWRGYFD 327 (434)
T ss_pred hCCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccccccccCC
Confidence 356788999999999998642 2 3446999999999999988776 4678889998875 4467899
Q ss_pred EEEeh------hhhhhcCCh------h-------HHHHHHHHHHhccccCcEEEEEEcCccchh
Q 016157 182 AAISI------AVLHHLSTE------S-------RRKKAIEELVRVVKKGSLVLITVWAVEQED 226 (394)
Q Consensus 182 ~Vi~~------~vl~hl~~~------~-------~~~~~L~ei~r~LkpGG~lli~~~~~~~~~ 226 (394)
.|++. +++++-++. + ...++|.++.++|||||+++.++.+...++
T Consensus 328 ~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~~E 391 (434)
T PRK14901 328 RILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLHPAE 391 (434)
T ss_pred EEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhh
Confidence 99973 355544331 1 136889999999999999999987765443
|
|
| >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=8.7e-09 Score=103.68 Aligned_cols=104 Identities=22% Similarity=0.257 Sum_probs=75.5
Q ss_pred HHcCCCCCCEEEEEcCccCcccc----cCCCcEEEEEeCCHHHHHHHHHc------CCeEEEeecCCCCC-CCCCccEEE
Q 016157 116 FLNSLPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR------GHEVLVADAVNLPY-RSDFGDAAI 184 (394)
Q Consensus 116 ~l~~l~~g~~VLDvGCG~G~~l~----~~~~~~v~gvD~S~~~l~~a~~~------~i~~~~~D~~~lp~-~~~~fD~Vi 184 (394)
.+..++++.+|||+|||+|.++. ..++..++|+|+|+.+++.|+++ +++++++|+.+..+ ..++||+|+
T Consensus 245 aL~~l~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l~~~~~FDLIV 324 (423)
T PRK14966 245 VLARLPENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGARVEFAHGSWFDTDMPSEGKWDIIV 324 (423)
T ss_pred hhhccCCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhccccccCCCccEEE
Confidence 33455667799999999998642 35778999999999999999886 47889999876433 245799999
Q ss_pred ehhhhh-----hcCCh-----------------hHHHHHHHHHHhccccCcEEEEEE
Q 016157 185 SIAVLH-----HLSTE-----------------SRRKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 185 ~~~vl~-----hl~~~-----------------~~~~~~L~ei~r~LkpGG~lli~~ 219 (394)
++--.. ++... +-..++++.+.+.|+|||.+++..
T Consensus 325 SNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEi 381 (423)
T PRK14966 325 SNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEH 381 (423)
T ss_pred ECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 954210 11000 113467778889999999988765
|
|
| >PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=98.90 E-value=6.9e-09 Score=94.70 Aligned_cols=138 Identities=18% Similarity=0.201 Sum_probs=98.1
Q ss_pred CCCCCE-EEEEcCccCcc----cccCCCcEEEEEeCCHHHHHHHHHc-------CC-eEEEeecCCCCC--------CCC
Q 016157 120 LPSGSL-VLDAGCGNGKY----LGLNPDCFFVGCDISPSLIKICVDR-------GH-EVLVADAVNLPY--------RSD 178 (394)
Q Consensus 120 l~~g~~-VLDvGCG~G~~----l~~~~~~~v~gvD~S~~~l~~a~~~-------~i-~~~~~D~~~lp~--------~~~ 178 (394)
+++... |||||||||.. +...|.....-.|+.+..+...... ++ .-+..|+..-+. ..+
T Consensus 22 l~~~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~ 101 (204)
T PF06080_consen 22 LPDSGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPE 101 (204)
T ss_pred hCccCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCC
Confidence 455554 99999999984 4558888888999998875333322 22 235667766432 245
Q ss_pred CccEEEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCccchhhhhccccccchHHHHHhHhCCCCCCccCCCcc
Q 016157 179 FGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGPGSPRVRSPSAR 258 (394)
Q Consensus 179 ~fD~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 258 (394)
.||+|+++.++|-.+... ...+++.+.++|+|||.|+++-+...+ ..+..-+..-++.|+....|........
T Consensus 102 ~~D~i~~~N~lHI~p~~~-~~~lf~~a~~~L~~gG~L~~YGPF~~~------G~~ts~SN~~FD~sLr~rdp~~GiRD~e 174 (204)
T PF06080_consen 102 SFDAIFCINMLHISPWSA-VEGLFAGAARLLKPGGLLFLYGPFNRD------GKFTSESNAAFDASLRSRDPEWGIRDIE 174 (204)
T ss_pred CcceeeehhHHHhcCHHH-HHHHHHHHHHhCCCCCEEEEeCCcccC------CEeCCcHHHHHHHHHhcCCCCcCccCHH
Confidence 899999999999887655 799999999999999999999765433 2233344556778887777776666555
Q ss_pred cccccc
Q 016157 259 TLESIP 264 (394)
Q Consensus 259 ~le~i~ 264 (394)
.++.++
T Consensus 175 ~v~~lA 180 (204)
T PF06080_consen 175 DVEALA 180 (204)
T ss_pred HHHHHH
Confidence 555444
|
The function of this family is unknown. |
| >PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.90 E-value=5.4e-09 Score=98.50 Aligned_cols=101 Identities=23% Similarity=0.301 Sum_probs=82.8
Q ss_pred CCCCCCEEEEEcCccCccc----ccCCCcEEEEEeCCHHHHHHHHHc-CCeEEEeecCCCCCCCCCccEEEehhhhhhcC
Q 016157 119 SLPSGSLVLDAGCGNGKYL----GLNPDCFFVGCDISPSLIKICVDR-GHEVLVADAVNLPYRSDFGDAAISIAVLHHLS 193 (394)
Q Consensus 119 ~l~~g~~VLDvGCG~G~~l----~~~~~~~v~gvD~S~~~l~~a~~~-~i~~~~~D~~~lp~~~~~fD~Vi~~~vl~hl~ 193 (394)
.+....+|||||+|+|.++ ...|+.+++..|+ +..++.+++. +++++.+|+. -+++. +|+++...+||+++
T Consensus 97 d~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~~~rv~~~~gd~f-~~~P~--~D~~~l~~vLh~~~ 172 (241)
T PF00891_consen 97 DFSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKEADRVEFVPGDFF-DPLPV--ADVYLLRHVLHDWS 172 (241)
T ss_dssp TTTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHHTTTEEEEES-TT-TCCSS--ESEEEEESSGGGS-
T ss_pred cccCccEEEeccCcchHHHHHHHHHCCCCcceeecc-HhhhhccccccccccccccHH-hhhcc--ccceeeehhhhhcc
Confidence 4556679999999999975 3589999999999 7788887776 7999999998 56655 99999999999999
Q ss_pred ChhHHHHHHHHHHhccccC--cEEEEEEcCccc
Q 016157 194 TESRRKKAIEELVRVVKKG--SLVLITVWAVEQ 224 (394)
Q Consensus 194 ~~~~~~~~L~ei~r~LkpG--G~lli~~~~~~~ 224 (394)
+++ ...+|+++++.|+|| |+|+|..+-.+.
T Consensus 173 d~~-~~~iL~~~~~al~pg~~g~llI~e~~~~~ 204 (241)
T PF00891_consen 173 DED-CVKILRNAAAALKPGKDGRLLIIEMVLPD 204 (241)
T ss_dssp HHH-HHHHHHHHHHHSEECTTEEEEEEEEEECS
T ss_pred hHH-HHHHHHHHHHHhCCCCCCeEEEEeeccCC
Confidence 865 899999999999999 999999875443
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A .... |
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Probab=98.89 E-value=9.9e-09 Score=104.94 Aligned_cols=109 Identities=17% Similarity=0.205 Sum_probs=80.4
Q ss_pred CCCCCCEEEEEcCccCccc----ccCCCcEEEEEeCCHHHHHHHHHc----CCe--E--EEeecCCCCC--CCCCccEEE
Q 016157 119 SLPSGSLVLDAGCGNGKYL----GLNPDCFFVGCDISPSLIKICVDR----GHE--V--LVADAVNLPY--RSDFGDAAI 184 (394)
Q Consensus 119 ~l~~g~~VLDvGCG~G~~l----~~~~~~~v~gvD~S~~~l~~a~~~----~i~--~--~~~D~~~lp~--~~~~fD~Vi 184 (394)
.+.+|.+|||+|||+|..+ ...+...++|+|+++.+++.++++ ++. + ..+|....+. ..++||.|+
T Consensus 235 ~~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~~fD~Vl 314 (426)
T TIGR00563 235 APQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENEQFDRIL 314 (426)
T ss_pred CCCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccccccCEEE
Confidence 4567899999999999753 224467999999999999998776 442 3 4556655443 467899998
Q ss_pred e------hhhhhhcCCh------h-------HHHHHHHHHHhccccCcEEEEEEcCccchhh
Q 016157 185 S------IAVLHHLSTE------S-------RRKKAIEELVRVVKKGSLVLITVWAVEQEDK 227 (394)
Q Consensus 185 ~------~~vl~hl~~~------~-------~~~~~L~ei~r~LkpGG~lli~~~~~~~~~~ 227 (394)
+ .+++++.++. + ...++|.++.++|||||++++++.+...+++
T Consensus 315 lDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~~~En 376 (426)
T TIGR00563 315 LDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVLPEEN 376 (426)
T ss_pred EcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhC
Confidence 5 3456655431 0 1367999999999999999999988865443
|
The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. |
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=9e-09 Score=101.15 Aligned_cols=91 Identities=18% Similarity=0.196 Sum_probs=71.1
Q ss_pred CCCCCEEEEEcCccCccccc----C-CCcEEEEEeCCHHHHHHHHHc-------CCeEEEeecCCCCCCCCCccEEEehh
Q 016157 120 LPSGSLVLDAGCGNGKYLGL----N-PDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFGDAAISIA 187 (394)
Q Consensus 120 l~~g~~VLDvGCG~G~~l~~----~-~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~lp~~~~~fD~Vi~~~ 187 (394)
++++.+|||||||+|.++.. . ....|+|+|+++.+++.|+++ ++.++++|+...+.....||+|++..
T Consensus 78 i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~~~~fD~Ii~~~ 157 (322)
T PRK13943 78 LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPEFAPYDVIFVTV 157 (322)
T ss_pred CCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcccccCCccEEEECC
Confidence 56788999999999997532 2 234799999999999998874 46788999877655557899999987
Q ss_pred hhhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 016157 188 VLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 188 vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~ 219 (394)
.+.+++ ..+.+.|+|||++++..
T Consensus 158 g~~~ip---------~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 158 GVDEVP---------ETWFTQLKEGGRVIVPI 180 (322)
T ss_pred chHHhH---------HHHHHhcCCCCEEEEEe
Confidence 666543 23567899999988865
|
|
| >PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases | Back alignment and domain information |
|---|
Probab=98.88 E-value=7.1e-09 Score=94.40 Aligned_cols=99 Identities=23% Similarity=0.317 Sum_probs=68.2
Q ss_pred hHHHHHHHcCCCCCCEEEEEcCccCcccccCC-CcEEEEEeCCHHHHHHHHHcCCeEEEeecCCCCCCCCCccEEEehhh
Q 016157 110 WPKVATFLNSLPSGSLVLDAGCGNGKYLGLNP-DCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAV 188 (394)
Q Consensus 110 ~~~l~~~l~~l~~g~~VLDvGCG~G~~l~~~~-~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~lp~~~~~fD~Vi~~~v 188 (394)
...+...+...+++..|.|+|||.+.++...+ +..|.-.|+-+. +-.++.+|+.++|+.+++.|++|.+-.
T Consensus 60 vd~iI~~l~~~~~~~viaD~GCGdA~la~~~~~~~~V~SfDLva~--------n~~Vtacdia~vPL~~~svDv~VfcLS 131 (219)
T PF05148_consen 60 VDVIIEWLKKRPKSLVIADFGCGDAKLAKAVPNKHKVHSFDLVAP--------NPRVTACDIANVPLEDESVDVAVFCLS 131 (219)
T ss_dssp HHHHHHHHCTS-TTS-EEEES-TT-HHHHH--S---EEEEESS-S--------STTEEES-TTS-S--TT-EEEEEEES-
T ss_pred HHHHHHHHHhcCCCEEEEECCCchHHHHHhcccCceEEEeeccCC--------CCCEEEecCccCcCCCCceeEEEEEhh
Confidence 34567777777778899999999999986544 468999998643 346899999999999999999999887
Q ss_pred hhhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 016157 189 LHHLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (394)
Q Consensus 189 l~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~ 220 (394)
|.... ...+|.|+.|+|||||.|.|...
T Consensus 132 LMGTn----~~~fi~EA~RvLK~~G~L~IAEV 159 (219)
T PF05148_consen 132 LMGTN----WPDFIREANRVLKPGGILKIAEV 159 (219)
T ss_dssp --SS-----HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hhCCC----cHHHHHHHHheeccCcEEEEEEe
Confidence 76543 68999999999999999999964
|
; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B. |
| >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Probab=98.88 E-value=8.4e-09 Score=98.85 Aligned_cols=115 Identities=19% Similarity=0.189 Sum_probs=83.0
Q ss_pred HHHHHcCCCCCCEEEEEcCccCcccc----c-CCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeecCCCCCCCCCc
Q 016157 113 VATFLNSLPSGSLVLDAGCGNGKYLG----L-NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFG 180 (394)
Q Consensus 113 l~~~l~~l~~g~~VLDvGCG~G~~l~----~-~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~lp~~~~~f 180 (394)
+...+..+.+|.+|||+|||+|..+. . .....|+++|+++.+++.++++ ++.++..|+..++...+.|
T Consensus 62 ~~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~f 141 (264)
T TIGR00446 62 IPPLALEPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKF 141 (264)
T ss_pred HHHHHhCCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCC
Confidence 33344466788999999999999642 2 2345899999999999988876 4678888987766555679
Q ss_pred cEEEehh------hhhhcCC------h-------hHHHHHHHHHHhccccCcEEEEEEcCccchhh
Q 016157 181 DAAISIA------VLHHLST------E-------SRRKKAIEELVRVVKKGSLVLITVWAVEQEDK 227 (394)
Q Consensus 181 D~Vi~~~------vl~hl~~------~-------~~~~~~L~ei~r~LkpGG~lli~~~~~~~~~~ 227 (394)
|.|++.. ++.+-++ . .....+|..+.++|||||+++.++.+...+++
T Consensus 142 D~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~~~En 207 (264)
T TIGR00446 142 DAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSLEPEEN 207 (264)
T ss_pred CEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChHHH
Confidence 9998632 2222111 0 01356999999999999999999877765543
|
|
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.4e-08 Score=91.01 Aligned_cols=100 Identities=16% Similarity=0.133 Sum_probs=82.2
Q ss_pred CCCCCCEEEEEcCccCccc----ccCCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeecCCCCCCCCCccEEEehh
Q 016157 119 SLPSGSLVLDAGCGNGKYL----GLNPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFGDAAISIA 187 (394)
Q Consensus 119 ~l~~g~~VLDvGCG~G~~l----~~~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~lp~~~~~fD~Vi~~~ 187 (394)
.+.+|.+++|||||+|... ...|..+++++|.++++++..+++ +++++.+++.+.-....+||.|+...
T Consensus 31 ~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~~~daiFIGG 110 (187)
T COG2242 31 RPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDLPSPDAIFIGG 110 (187)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCCCCCCEEEECC
Confidence 5678999999999999963 347889999999999999887776 68899999876422223799999988
Q ss_pred hhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCccch
Q 016157 188 VLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQE 225 (394)
Q Consensus 188 vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~~~~ 225 (394)
. .. ...+|+.+...|||||++++..-..+..
T Consensus 111 g-~~------i~~ile~~~~~l~~ggrlV~naitlE~~ 141 (187)
T COG2242 111 G-GN------IEEILEAAWERLKPGGRLVANAITLETL 141 (187)
T ss_pred C-CC------HHHHHHHHHHHcCcCCeEEEEeecHHHH
Confidence 7 22 6789999999999999999998766543
|
|
| >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.8e-08 Score=95.90 Aligned_cols=98 Identities=17% Similarity=0.193 Sum_probs=72.1
Q ss_pred CCEEEEEcCccCcccc----cCCCcEEEEEeCCHHHHHHHHHc----CCeEEEeecCCC-CC-CCCCccEEEehhh----
Q 016157 123 GSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR----GHEVLVADAVNL-PY-RSDFGDAAISIAV---- 188 (394)
Q Consensus 123 g~~VLDvGCG~G~~l~----~~~~~~v~gvD~S~~~l~~a~~~----~i~~~~~D~~~l-p~-~~~~fD~Vi~~~v---- 188 (394)
+.+|||+|||+|.++. ..++..++|+|+|+.+++.|+++ +++++++|+.+. +. ..+.||+|+++--
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~~~ 166 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAGGTVHEGDLYDALPTALRGRVDILAANAPYVPT 166 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCEEEEeechhhcchhcCCCEeEEEECCCCCCc
Confidence 4589999999998642 35677999999999999999876 578999998763 21 1357999998642
Q ss_pred --hhhcCChh-----------------HHHHHHHHHHhccccCcEEEEEEc
Q 016157 189 --LHHLSTES-----------------RRKKAIEELVRVVKKGSLVLITVW 220 (394)
Q Consensus 189 --l~hl~~~~-----------------~~~~~L~ei~r~LkpGG~lli~~~ 220 (394)
+..++... -...+++.+.++|||||++++..-
T Consensus 167 ~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~ 217 (251)
T TIGR03704 167 DAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETS 217 (251)
T ss_pred hhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 22221110 134778888899999999998764
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. |
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=8.5e-09 Score=100.91 Aligned_cols=96 Identities=17% Similarity=0.171 Sum_probs=72.2
Q ss_pred CEEEEEcCccCcccc----cCCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeecCCCCCCCCCccEEEehh----
Q 016157 124 SLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISIA---- 187 (394)
Q Consensus 124 ~~VLDvGCG~G~~l~----~~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~lp~~~~~fD~Vi~~~---- 187 (394)
.+|||+|||+|.++. ..++..++|+|+|+.+++.|+++ +++++++|+.+. ++.++||+|+++-
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~-l~~~~fDlIvsNPPyi~ 213 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAA-LPGRRYDLIVSNPPYVD 213 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhh-CCCCCccEEEECCCCCC
Confidence 689999999999743 35678999999999999999876 267899998652 3356899999862
Q ss_pred --hh-------hhcCC---------hhHHHHHHHHHHhccccCcEEEEEEc
Q 016157 188 --VL-------HHLST---------ESRRKKAIEELVRVVKKGSLVLITVW 220 (394)
Q Consensus 188 --vl-------~hl~~---------~~~~~~~L~ei~r~LkpGG~lli~~~ 220 (394)
.+ +|-+. .+-...+++++.++|+|||++++...
T Consensus 214 ~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g 264 (307)
T PRK11805 214 AEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVG 264 (307)
T ss_pred ccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 11 11111 01135788999999999999998754
|
|
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.86 E-value=8.6e-09 Score=99.35 Aligned_cols=100 Identities=23% Similarity=0.321 Sum_probs=73.6
Q ss_pred CCCCCCEEEEEcCccCcccc--cCCC-cEEEEEeCCHHHHHHHHHc----CCe----EEEeecCCCCCCCCCccEEEehh
Q 016157 119 SLPSGSLVLDAGCGNGKYLG--LNPD-CFFVGCDISPSLIKICVDR----GHE----VLVADAVNLPYRSDFGDAAISIA 187 (394)
Q Consensus 119 ~l~~g~~VLDvGCG~G~~l~--~~~~-~~v~gvD~S~~~l~~a~~~----~i~----~~~~D~~~lp~~~~~fD~Vi~~~ 187 (394)
...+|.+|||+|||+|.++- ..-| ..++|+|+.+-+++.|+++ ++. ....+....+ ..+.||+|+++-
T Consensus 159 ~~~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~-~~~~~DvIVANI 237 (300)
T COG2264 159 LLKKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVP-ENGPFDVIVANI 237 (300)
T ss_pred hhcCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhc-ccCcccEEEehh
Confidence 34588999999999999743 2333 4799999999999999887 444 2222222222 236999999986
Q ss_pred hhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCccch
Q 016157 188 VLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQE 225 (394)
Q Consensus 188 vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~~~~ 225 (394)
|-.+ ...+...+.++|||||+++++-.-.++.
T Consensus 238 -LA~v-----l~~La~~~~~~lkpgg~lIlSGIl~~q~ 269 (300)
T COG2264 238 -LAEV-----LVELAPDIKRLLKPGGRLILSGILEDQA 269 (300)
T ss_pred -hHHH-----HHHHHHHHHHHcCCCceEEEEeehHhHH
Confidence 3333 5788999999999999999998765553
|
|
| >PHA03412 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.5e-08 Score=93.12 Aligned_cols=129 Identities=19% Similarity=0.149 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHHhhcccccc--cc-ccchHHHHHHHcCCCCCCEEEEEcCccCccccc-------CCCcEEEEEeCCHHH
Q 016157 85 ELEKKYVHRVYDAIAPHFSS--TR-FAKWPKVATFLNSLPSGSLVLDAGCGNGKYLGL-------NPDCFFVGCDISPSL 154 (394)
Q Consensus 85 ~~~~~~v~~~Yd~~a~~y~~--~~-~~~~~~l~~~l~~l~~g~~VLDvGCG~G~~l~~-------~~~~~v~gvD~S~~~ 154 (394)
..+++.+.+-|..-+-.-.. .. +.+..-...+......+.+|||+|||+|.++.. .+...|+|+|+++.+
T Consensus 9 ~~~~~f~~~n~~~~~~~~~~~~GqFfTP~~iAr~~~i~~~~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~A 88 (241)
T PHA03412 9 YEEKLFIIENFHEGAFTNNSELGAFFTPIGLARDFTIDACTSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTY 88 (241)
T ss_pred HHHHHHHHhhcccccccccccCCccCCCHHHHHHHHHhccCCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHH
Confidence 45667777766653221111 11 122222122222223467999999999997531 245699999999999
Q ss_pred HHHHHHc--CCeEEEeecCCCCCCCCCccEEEehhhhhhcCCh---------hHHHHHHHHHHhccccCcE
Q 016157 155 IKICVDR--GHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTE---------SRRKKAIEELVRVVKKGSL 214 (394)
Q Consensus 155 l~~a~~~--~i~~~~~D~~~lp~~~~~fD~Vi~~~vl~hl~~~---------~~~~~~L~ei~r~LkpGG~ 214 (394)
++.|+++ ++.++.+|+...++ +++||+||++--..-+... .-...++..+.++++||+.
T Consensus 89 l~~Ar~n~~~~~~~~~D~~~~~~-~~~FDlIIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ 158 (241)
T PHA03412 89 YKLGKRIVPEATWINADALTTEF-DTLFDMAISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF 158 (241)
T ss_pred HHHHHhhccCCEEEEcchhcccc-cCCccEEEECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence 9999987 58899999987665 5689999997544322111 1145688899997777764
|
|
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.9e-08 Score=96.42 Aligned_cols=99 Identities=27% Similarity=0.325 Sum_probs=73.6
Q ss_pred CCCCCEEEEEcCccCcccc----cCCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeecCCCCCCCCCccEEEehhh
Q 016157 120 LPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFGDAAISIAV 188 (394)
Q Consensus 120 l~~g~~VLDvGCG~G~~l~----~~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~lp~~~~~fD~Vi~~~v 188 (394)
..++.+|||+|||+|.++. ..+...++|+|+|+.+++.|+++ ++.++.+|+... +..++||+|+++--
T Consensus 106 ~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~-~~~~~fD~Iv~npP 184 (275)
T PRK09328 106 LKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEP-LPGGRFDLIVSNPP 184 (275)
T ss_pred ccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCc-CCCCceeEEEECCC
Confidence 3466799999999998642 35678999999999999999875 478889998653 33578999998521
Q ss_pred ------hhhcCCh-----------------hHHHHHHHHHHhccccCcEEEEEE
Q 016157 189 ------LHHLSTE-----------------SRRKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 189 ------l~hl~~~-----------------~~~~~~L~ei~r~LkpGG~lli~~ 219 (394)
++.+... +....+++++.++|+|||.+++..
T Consensus 185 y~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~ 238 (275)
T PRK09328 185 YIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEI 238 (275)
T ss_pred cCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 1111111 113678889999999999999854
|
|
| >COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.82 E-value=8.5e-09 Score=94.29 Aligned_cols=93 Identities=20% Similarity=0.143 Sum_probs=75.6
Q ss_pred CCCCCCEEEEEcCccCccccc--CCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeecCCCCCCCCCccEEEehhhh
Q 016157 119 SLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFGDAAISIAVL 189 (394)
Q Consensus 119 ~l~~g~~VLDvGCG~G~~l~~--~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~lp~~~~~fD~Vi~~~vl 189 (394)
.+.++.+|||||||+|+.+.. .-..+|+.+|+.+.+.+.|+++ ++.++++|...---....||.|+..+..
T Consensus 69 ~~~~g~~VLEIGtGsGY~aAvla~l~~~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~~~aPyD~I~Vtaaa 148 (209)
T COG2518 69 ELKPGDRVLEIGTGSGYQAAVLARLVGRVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWPEEAPYDRIIVTAAA 148 (209)
T ss_pred CCCCCCeEEEECCCchHHHHHHHHHhCeEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCCCCCCcCEEEEeecc
Confidence 468899999999999997543 1122999999999999999986 6889999987743345889999999988
Q ss_pred hhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 016157 190 HHLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (394)
Q Consensus 190 ~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~ 220 (394)
..+|. .+.+.|||||++++-+-
T Consensus 149 ~~vP~---------~Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 149 PEVPE---------ALLDQLKPGGRLVIPVG 170 (209)
T ss_pred CCCCH---------HHHHhcccCCEEEEEEc
Confidence 77754 34677999999999875
|
|
| >COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.82 E-value=3.2e-08 Score=94.98 Aligned_cols=120 Identities=22% Similarity=0.239 Sum_probs=83.2
Q ss_pred ccccccccccchHHHHHHHcCCCCCCEEEEEcCccCcc----cccCCCcEEEEEeCCHHHHHHHHHc----C---CeEEE
Q 016157 99 APHFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGKY----LGLNPDCFFVGCDISPSLIKICVDR----G---HEVLV 167 (394)
Q Consensus 99 a~~y~~~~~~~~~~l~~~l~~l~~g~~VLDvGCG~G~~----l~~~~~~~v~gvD~S~~~l~~a~~~----~---i~~~~ 167 (394)
...|+..+...-.+++.--.....+.+|||+|||.|.+ +...|...++-+|++..+++.|+++ + ..++.
T Consensus 135 pGVFS~~~lD~GS~lLl~~l~~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~ 214 (300)
T COG2813 135 PGVFSRDKLDKGSRLLLETLPPDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWA 214 (300)
T ss_pred CCCCcCCCcChHHHHHHHhCCccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEE
Confidence 34455444433333322222223445999999999986 3457888999999999999999987 2 24566
Q ss_pred eecCCCCCCCCCccEEEehhhhhhcCChh--HHHHHHHHHHhccccCcEEEEEEc
Q 016157 168 ADAVNLPYRSDFGDAAISIAVLHHLSTES--RRKKAIEELVRVVKKGSLVLITVW 220 (394)
Q Consensus 168 ~D~~~lp~~~~~fD~Vi~~~vl~hl~~~~--~~~~~L~ei~r~LkpGG~lli~~~ 220 (394)
.|..+ +..+ +||+|+|+--||-=.... -..+++.+..+.|++||.|.|..-
T Consensus 215 s~~~~-~v~~-kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan 267 (300)
T COG2813 215 SNLYE-PVEG-KFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVAN 267 (300)
T ss_pred ecccc-cccc-cccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEc
Confidence 66555 3333 999999998887432211 134899999999999999999875
|
|
| >PRK10611 chemotaxis methyltransferase CheR; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=3.2e-08 Score=95.62 Aligned_cols=108 Identities=13% Similarity=0.155 Sum_probs=80.9
Q ss_pred hHHHHHHHcCCCCCCEEEEEcCccCcc-------c-cc----CCCcEEEEEeCCHHHHHHHHHc----------------
Q 016157 110 WPKVATFLNSLPSGSLVLDAGCGNGKY-------L-GL----NPDCFFVGCDISPSLIKICVDR---------------- 161 (394)
Q Consensus 110 ~~~l~~~l~~l~~g~~VLDvGCG~G~~-------l-~~----~~~~~v~gvD~S~~~l~~a~~~---------------- 161 (394)
|..+...+......-+|+..||+||.- + .. ...+.|+|+|+|..+++.|++-
T Consensus 103 f~~L~~~~~~~~~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ 182 (287)
T PRK10611 103 FPILAEHARRRSGEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQ 182 (287)
T ss_pred HHHHHHHHHhcCCCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHH
Confidence 444444332222236999999999972 1 11 1246899999999999999853
Q ss_pred ----------------------CCeEEEeecCCCCCC-CCCccEEEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEE
Q 016157 162 ----------------------GHEVLVADAVNLPYR-SDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLIT 218 (394)
Q Consensus 162 ----------------------~i~~~~~D~~~lp~~-~~~fD~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~ 218 (394)
.+.|.+.|+.+.+++ .+.||+|+|.+++.|+..+. +.++++.+.+.|+|||.|++-
T Consensus 183 ryF~~~~~~~~~~~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~-~~~vl~~l~~~L~pgG~L~lG 261 (287)
T PRK10611 183 RYFMRGTGPHEGLVRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTT-QERILRRFVPLLKPDGLLFAG 261 (287)
T ss_pred HHcccccCCCCceEEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHH-HHHHHHHHHHHhCCCcEEEEe
Confidence 246777787775543 57899999999999997755 799999999999999988775
|
|
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.80 E-value=2.5e-08 Score=93.82 Aligned_cols=102 Identities=18% Similarity=0.200 Sum_probs=78.1
Q ss_pred CCCCCCEEEEEcCccCccc---c-cCCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeecCCCC--CCCCCccEEE
Q 016157 119 SLPSGSLVLDAGCGNGKYL---G-LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLP--YRSDFGDAAI 184 (394)
Q Consensus 119 ~l~~g~~VLDvGCG~G~~l---~-~~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~lp--~~~~~fD~Vi 184 (394)
..+...+|||+|||+|... . ..+.+.++|+|+.+.|.+.|++. .++++++|+.++. ....+||+|+
T Consensus 41 ~~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii 120 (248)
T COG4123 41 PVPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLII 120 (248)
T ss_pred ccccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEE
Confidence 3444779999999999852 2 23458999999999999999987 5899999998865 3345799999
Q ss_pred ehhhhhhcCCh---------------hHHHHHHHHHHhccccCcEEEEEEc
Q 016157 185 SIAVLHHLSTE---------------SRRKKAIEELVRVVKKGSLVLITVW 220 (394)
Q Consensus 185 ~~~vl~hl~~~---------------~~~~~~L~ei~r~LkpGG~lli~~~ 220 (394)
|+--..-.... -..+.+++...++|||||.+.+...
T Consensus 121 ~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r 171 (248)
T COG4123 121 CNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHR 171 (248)
T ss_pred eCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEec
Confidence 96433222111 0168899999999999999999864
|
|
| >PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.4e-08 Score=92.93 Aligned_cols=95 Identities=19% Similarity=0.193 Sum_probs=67.9
Q ss_pred CCEEEEEcCccCcc--c------c---c--CCCcEEEEEeCCHHHHHHHHHc----------------------------
Q 016157 123 GSLVLDAGCGNGKY--L------G---L--NPDCFFVGCDISPSLIKICVDR---------------------------- 161 (394)
Q Consensus 123 g~~VLDvGCG~G~~--l------~---~--~~~~~v~gvD~S~~~l~~a~~~---------------------------- 161 (394)
.-+|+.+||++|.- . . . .....++|+|+|+.+++.|++-
T Consensus 32 ~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~~ 111 (196)
T PF01739_consen 32 PLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGYR 111 (196)
T ss_dssp -EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCTT
T ss_pred CeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCcee
Confidence 36899999999982 1 1 1 1247999999999999999862
Q ss_pred -------CCeEEEeecCCCCCCCCCccEEEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEE
Q 016157 162 -------GHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLIT 218 (394)
Q Consensus 162 -------~i~~~~~D~~~lp~~~~~fD~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~ 218 (394)
.+.|.+.|+.+.+...+.||+|+|-+||-++..+. ..++++.+++.|+|||.|++.
T Consensus 112 v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~-~~~vl~~l~~~L~pgG~L~lG 174 (196)
T PF01739_consen 112 VKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPET-QQRVLRRLHRSLKPGGYLFLG 174 (196)
T ss_dssp E-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHH-HHHHHHHHGGGEEEEEEEEE-
T ss_pred EChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHH-HHHHHHHHHHHcCCCCEEEEe
Confidence 47899999998444568899999999999998765 799999999999999999986
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A. |
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.6e-08 Score=98.13 Aligned_cols=99 Identities=20% Similarity=0.270 Sum_probs=71.2
Q ss_pred CCCCCCEEEEEcCccCcccc--cCCC-cEEEEEeCCHHHHHHHHHc----C--CeEEEeecCCCCCCCCCccEEEehhhh
Q 016157 119 SLPSGSLVLDAGCGNGKYLG--LNPD-CFFVGCDISPSLIKICVDR----G--HEVLVADAVNLPYRSDFGDAAISIAVL 189 (394)
Q Consensus 119 ~l~~g~~VLDvGCG~G~~l~--~~~~-~~v~gvD~S~~~l~~a~~~----~--i~~~~~D~~~lp~~~~~fD~Vi~~~vl 189 (394)
...+|.+|||+|||+|.++- ..-| ..|+|+|+++.+++.|+++ + ..+......+ .....||+|+++-..
T Consensus 158 ~~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~~~~~--~~~~~~dlvvANI~~ 235 (295)
T PF06325_consen 158 YVKPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVEDRIEVSLSED--LVEGKFDLVVANILA 235 (295)
T ss_dssp HSSTTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEESCTSC--TCCS-EEEEEEES-H
T ss_pred hccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEEEecc--cccccCCEEEECCCH
Confidence 35678899999999999742 2233 3899999999999999987 2 2333322222 335899999997654
Q ss_pred hhcCChhHHHHHHHHHHhccccCcEEEEEEcCccch
Q 016157 190 HHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQE 225 (394)
Q Consensus 190 ~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~~~~ 225 (394)
+- ...++..+.++|+|||+++++-.-.++.
T Consensus 236 ~v------L~~l~~~~~~~l~~~G~lIlSGIl~~~~ 265 (295)
T PF06325_consen 236 DV------LLELAPDIASLLKPGGYLILSGILEEQE 265 (295)
T ss_dssp HH------HHHHHHHCHHHEEEEEEEEEEEEEGGGH
T ss_pred HH------HHHHHHHHHHhhCCCCEEEEccccHHHH
Confidence 42 4678888999999999999998766554
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.77 E-value=5.3e-08 Score=90.82 Aligned_cols=98 Identities=21% Similarity=0.297 Sum_probs=77.9
Q ss_pred HHHHHHHcCCCCCCEEEEEcCccCcccccCCCcEEEEEeCCHHHHHHHHHcCCeEEEeecCCCCCCCCCccEEEehhhhh
Q 016157 111 PKVATFLNSLPSGSLVLDAGCGNGKYLGLNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLH 190 (394)
Q Consensus 111 ~~l~~~l~~l~~g~~VLDvGCG~G~~l~~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~lp~~~~~fD~Vi~~~vl~ 190 (394)
..+...+...+....|.|+|||.+.++. .....|+..|+-+ -+-+++.+|+.++|+.+++.|+++.+-.|.
T Consensus 169 d~ii~~ik~r~~~~vIaD~GCGEakiA~-~~~~kV~SfDL~a--------~~~~V~~cDm~~vPl~d~svDvaV~CLSLM 239 (325)
T KOG3045|consen 169 DVIIRKIKRRPKNIVIADFGCGEAKIAS-SERHKVHSFDLVA--------VNERVIACDMRNVPLEDESVDVAVFCLSLM 239 (325)
T ss_pred HHHHHHHHhCcCceEEEecccchhhhhh-ccccceeeeeeec--------CCCceeeccccCCcCccCcccEEEeeHhhh
Confidence 3455666666667789999999999875 2334788888743 245789999999999999999999887765
Q ss_pred hcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 016157 191 HLSTESRRKKAIEELVRVVKKGSLVLITVWA 221 (394)
Q Consensus 191 hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~ 221 (394)
.- + ...++.|+.|+|||||.++|....
T Consensus 240 gt-n---~~df~kEa~RiLk~gG~l~IAEv~ 266 (325)
T KOG3045|consen 240 GT-N---LADFIKEANRILKPGGLLYIAEVK 266 (325)
T ss_pred cc-c---HHHHHHHHHHHhccCceEEEEehh
Confidence 43 2 789999999999999999999643
|
|
| >PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes | Back alignment and domain information |
|---|
Probab=98.77 E-value=2.5e-08 Score=93.74 Aligned_cols=93 Identities=19% Similarity=0.229 Sum_probs=77.6
Q ss_pred CCEEEEEcCccCccccc-CCCc-EEEEEeCCHHHHHHHHHcCCeEEEeecCCCCCCCCCccEEEehhhhhhcCChhHHHH
Q 016157 123 GSLVLDAGCGNGKYLGL-NPDC-FFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKK 200 (394)
Q Consensus 123 g~~VLDvGCG~G~~l~~-~~~~-~v~gvD~S~~~l~~a~~~~i~~~~~D~~~lp~~~~~fD~Vi~~~vl~hl~~~~~~~~ 200 (394)
..++||||.|.|..+.. .+-. +|++++.|+.|....+++|++++..| ++.-.+.+||+|.|.++|..-.. |..
T Consensus 95 ~~~lLDlGAGdG~VT~~l~~~f~~v~aTE~S~~Mr~rL~~kg~~vl~~~--~w~~~~~~fDvIscLNvLDRc~~---P~~ 169 (265)
T PF05219_consen 95 DKSLLDLGAGDGEVTERLAPLFKEVYATEASPPMRWRLSKKGFTVLDID--DWQQTDFKFDVISCLNVLDRCDR---PLT 169 (265)
T ss_pred CCceEEecCCCcHHHHHHHhhcceEEeecCCHHHHHHHHhCCCeEEehh--hhhccCCceEEEeehhhhhccCC---HHH
Confidence 46899999999998654 2322 79999999999999999998876443 34434568999999999998877 899
Q ss_pred HHHHHHhccccCcEEEEEEc
Q 016157 201 AIEELVRVVKKGSLVLITVW 220 (394)
Q Consensus 201 ~L~ei~r~LkpGG~lli~~~ 220 (394)
+|+.|++.|+|+|++++.+-
T Consensus 170 LL~~i~~~l~p~G~lilAvV 189 (265)
T PF05219_consen 170 LLRDIRRALKPNGRLILAVV 189 (265)
T ss_pred HHHHHHHHhCCCCEEEEEEE
Confidence 99999999999999999873
|
The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases. |
| >PRK14902 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=4.9e-08 Score=100.37 Aligned_cols=105 Identities=20% Similarity=0.253 Sum_probs=77.1
Q ss_pred CCCCCCEEEEEcCccCcccc----c-CCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeecCCCC--CCCCCccEEE
Q 016157 119 SLPSGSLVLDAGCGNGKYLG----L-NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLP--YRSDFGDAAI 184 (394)
Q Consensus 119 ~l~~g~~VLDvGCG~G~~l~----~-~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~lp--~~~~~fD~Vi 184 (394)
.+.++.+|||+|||+|..+. . .+...++|+|+++.+++.++++ +++++.+|+..++ +. ++||+|+
T Consensus 247 ~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~-~~fD~Vl 325 (444)
T PRK14902 247 DPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFA-EKFDKIL 325 (444)
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhc-ccCCEEE
Confidence 45678899999999998642 2 3567999999999999998875 3688899998764 32 7899999
Q ss_pred ehhh------hhhcCC------hh-------HHHHHHHHHHhccccCcEEEEEEcCccc
Q 016157 185 SIAV------LHHLST------ES-------RRKKAIEELVRVVKKGSLVLITVWAVEQ 224 (394)
Q Consensus 185 ~~~v------l~hl~~------~~-------~~~~~L~ei~r~LkpGG~lli~~~~~~~ 224 (394)
+..- +.+-++ .. ....+|..+.++|||||+++.++.+...
T Consensus 326 ~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~ 384 (444)
T PRK14902 326 VDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTIEK 384 (444)
T ss_pred EcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCCCh
Confidence 7431 221111 01 1246899999999999999987765533
|
|
| >smart00650 rADc Ribosomal RNA adenine dimethylases | Back alignment and domain information |
|---|
Probab=98.72 E-value=2.4e-08 Score=89.09 Aligned_cols=93 Identities=16% Similarity=0.228 Sum_probs=69.4
Q ss_pred CCCCCEEEEEcCccCccccc--CCCcEEEEEeCCHHHHHHHHHc-----CCeEEEeecCCCCCCCCCccEEEehhhhhhc
Q 016157 120 LPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR-----GHEVLVADAVNLPYRSDFGDAAISIAVLHHL 192 (394)
Q Consensus 120 l~~g~~VLDvGCG~G~~l~~--~~~~~v~gvD~S~~~l~~a~~~-----~i~~~~~D~~~lp~~~~~fD~Vi~~~vl~hl 192 (394)
+.++.+|||+|||+|.++.. ..+..++|+|+++.+++.++++ +++++.+|+.++++++..||.|+++--.+ +
T Consensus 11 ~~~~~~vLEiG~G~G~lt~~l~~~~~~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~~~~~~~d~vi~n~Py~-~ 89 (169)
T smart00650 11 LRPGDTVLEIGPGKGALTEELLERAARVTAIEIDPRLAPRLREKFAAADNLTVIHGDALKFDLPKLQPYKVVGNLPYN-I 89 (169)
T ss_pred CCCcCEEEEECCCccHHHHHHHhcCCeEEEEECCHHHHHHHHHHhccCCCEEEEECchhcCCccccCCCEEEECCCcc-c
Confidence 45678999999999998542 2356899999999999999876 58899999999988777799999875443 3
Q ss_pred CChhHHHHHHHHHHhc--cccCcEEEEE
Q 016157 193 STESRRKKAIEELVRV--VKKGSLVLIT 218 (394)
Q Consensus 193 ~~~~~~~~~L~ei~r~--LkpGG~lli~ 218 (394)
. ...+..+.+. +.++|.+++.
T Consensus 90 ~-----~~~i~~~l~~~~~~~~~~l~~q 112 (169)
T smart00650 90 S-----TPILFKLLEEPPAFRDAVLMVQ 112 (169)
T ss_pred H-----HHHHHHHHhcCCCcceEEEEEE
Confidence 2 2333333332 4477777665
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.69 E-value=5.8e-08 Score=101.25 Aligned_cols=97 Identities=13% Similarity=0.117 Sum_probs=71.0
Q ss_pred CCCEEEEEcCccCcccc----cCCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeecCCCCCCCCCccEEEehh--
Q 016157 122 SGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISIA-- 187 (394)
Q Consensus 122 ~g~~VLDvGCG~G~~l~----~~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~lp~~~~~fD~Vi~~~-- 187 (394)
++.+|||+|||+|.++. ..++..++|+|+|+.+++.|+++ .+.++.+|+... +..++||+|+++-
T Consensus 138 ~~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~-~~~~~fDlIvsNPPY 216 (506)
T PRK01544 138 KFLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFEN-IEKQKFDFIVSNPPY 216 (506)
T ss_pred CCCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhh-CcCCCccEEEECCCC
Confidence 34689999999998642 35778999999999999999876 367888887642 3356899999942
Q ss_pred ------------hhhhcCC---------hhHHHHHHHHHHhccccCcEEEEEE
Q 016157 188 ------------VLHHLST---------ESRRKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 188 ------------vl~hl~~---------~~~~~~~L~ei~r~LkpGG~lli~~ 219 (394)
++.|-+. -+....+++++.++|+|||.+++..
T Consensus 217 i~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEi 269 (506)
T PRK01544 217 ISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEI 269 (506)
T ss_pred CCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence 1111110 0123567888999999999998864
|
|
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=5.7e-08 Score=94.05 Aligned_cols=99 Identities=18% Similarity=0.204 Sum_probs=73.0
Q ss_pred CCCCEEEEEcCccCccccc---C-CCcEEEEEeCCHHHHHHHHHc------------CCeEEEeecCCC-CCCCCCccEE
Q 016157 121 PSGSLVLDAGCGNGKYLGL---N-PDCFFVGCDISPSLIKICVDR------------GHEVLVADAVNL-PYRSDFGDAA 183 (394)
Q Consensus 121 ~~g~~VLDvGCG~G~~l~~---~-~~~~v~gvD~S~~~l~~a~~~------------~i~~~~~D~~~l-p~~~~~fD~V 183 (394)
+...+||+||||+|..+.. . ...+|+++|+++.+++.|++. +++++.+|+... ....++||+|
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI 154 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVI 154 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEE
Confidence 3456999999999987542 3 335899999999999999874 357888998763 2346789999
Q ss_pred EehhhhhhcCChh-HHHHHHHHHHhccccCcEEEEEE
Q 016157 184 ISIAVLHHLSTES-RRKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 184 i~~~vl~hl~~~~-~~~~~L~ei~r~LkpGG~lli~~ 219 (394)
++...-.+.+... ....+++.+.+.|+|||++++..
T Consensus 155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~ 191 (283)
T PRK00811 155 IVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQS 191 (283)
T ss_pred EECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeC
Confidence 9965433222110 12678999999999999988764
|
|
| >PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.68 E-value=5.6e-08 Score=88.99 Aligned_cols=95 Identities=25% Similarity=0.378 Sum_probs=71.7
Q ss_pred EEEEEcCccCcccc----cCCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeecCC-CC--CCCCCccEEEehhhhh
Q 016157 125 LVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVN-LP--YRSDFGDAAISIAVLH 190 (394)
Q Consensus 125 ~VLDvGCG~G~~l~----~~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~-lp--~~~~~fD~Vi~~~vl~ 190 (394)
.+||||||.|.++. ..|+..++|+|+....+..+.++ |+.++++|+.. ++ ++++++|.|...+---
T Consensus 20 l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FPDP 99 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINFPDP 99 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES---
T ss_pred eEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeCCCC
Confidence 89999999999853 48999999999999988887765 78999999987 32 5578999999876554
Q ss_pred hcCChhH-----HHHHHHHHHhccccCcEEEEEE
Q 016157 191 HLSTESR-----RKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 191 hl~~~~~-----~~~~L~ei~r~LkpGG~lli~~ 219 (394)
|...... -..+|..++++|+|||.+.+.+
T Consensus 100 WpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~T 133 (195)
T PF02390_consen 100 WPKKRHHKRRLVNPEFLELLARVLKPGGELYFAT 133 (195)
T ss_dssp --SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred CcccchhhhhcCCchHHHHHHHHcCCCCEEEEEe
Confidence 4432210 3689999999999999999886
|
1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B .... |
| >TIGR03439 methyl_EasF probable methyltransferase domain, EasF family | Back alignment and domain information |
|---|
Probab=98.66 E-value=6.3e-07 Score=87.93 Aligned_cols=105 Identities=16% Similarity=0.219 Sum_probs=77.6
Q ss_pred HHHcCCCCCCEEEEEcCccCcc----cc----cCCCcEEEEEeCCHHHHHHHHHc-------CCeE--EEeecCC----C
Q 016157 115 TFLNSLPSGSLVLDAGCGNGKY----LG----LNPDCFFVGCDISPSLIKICVDR-------GHEV--LVADAVN----L 173 (394)
Q Consensus 115 ~~l~~l~~g~~VLDvGCG~G~~----l~----~~~~~~v~gvD~S~~~l~~a~~~-------~i~~--~~~D~~~----l 173 (394)
.+...++++..|+|+|||+|.= +. ......++++|+|..+|+.+.++ .+++ +.+|+.+ +
T Consensus 69 ~Ia~~i~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l 148 (319)
T TIGR03439 69 DIAASIPSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWL 148 (319)
T ss_pred HHHHhcCCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhc
Confidence 4445677888999999999983 22 23457899999999999888765 2444 7777755 2
Q ss_pred CC--CCCCccEEEeh-hhhhhcCChhHHHHHHHHHHh-ccccCcEEEEEEc
Q 016157 174 PY--RSDFGDAAISI-AVLHHLSTESRRKKAIEELVR-VVKKGSLVLITVW 220 (394)
Q Consensus 174 p~--~~~~fD~Vi~~-~vl~hl~~~~~~~~~L~ei~r-~LkpGG~lli~~~ 220 (394)
+- ......+++.. ..|.++...+ ...+|+++.+ .|+|||.|+|.+-
T Consensus 149 ~~~~~~~~~r~~~flGSsiGNf~~~e-a~~fL~~~~~~~l~~~d~lLiG~D 198 (319)
T TIGR03439 149 KRPENRSRPTTILWLGSSIGNFSRPE-AAAFLAGFLATALSPSDSFLIGLD 198 (319)
T ss_pred ccccccCCccEEEEeCccccCCCHHH-HHHHHHHHHHhhCCCCCEEEEecC
Confidence 21 12335666655 4899998766 7899999999 9999999999763
|
This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781). |
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.64 E-value=7e-08 Score=90.89 Aligned_cols=102 Identities=17% Similarity=0.102 Sum_probs=76.9
Q ss_pred HHHHHHcCCCCCCEEEEEcCccCcc----ccc-CCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeecCCC-C---
Q 016157 112 KVATFLNSLPSGSLVLDAGCGNGKY----LGL-NPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNL-P--- 174 (394)
Q Consensus 112 ~l~~~l~~l~~g~~VLDvGCG~G~~----l~~-~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~l-p--- 174 (394)
.+..++....+..+|||+|||+|.- +.. .+..+++++|+++.+++.|+++ .++++.+|+.+. +
T Consensus 58 ~~L~~l~~~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~ 137 (234)
T PLN02781 58 LFLSMLVKIMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLL 137 (234)
T ss_pred HHHHHHHHHhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHH
Confidence 3455555566678999999999983 222 4467999999999999999876 368899998763 2
Q ss_pred --CCCCCccEEEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 016157 175 --YRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 175 --~~~~~fD~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~ 219 (394)
...++||+|++-..- .....++..+.++|||||.+++..
T Consensus 138 ~~~~~~~fD~VfiDa~k------~~y~~~~~~~~~ll~~GG~ii~dn 178 (234)
T PLN02781 138 NNDPKPEFDFAFVDADK------PNYVHFHEQLLKLVKVGGIIAFDN 178 (234)
T ss_pred hCCCCCCCCEEEECCCH------HHHHHHHHHHHHhcCCCeEEEEEc
Confidence 114689999986431 124678999999999999988864
|
|
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.2e-08 Score=103.33 Aligned_cols=98 Identities=18% Similarity=0.242 Sum_probs=76.4
Q ss_pred CEEEEEcCccCcccccCCCcEEEEE-----eCCHHHHHHHHHcCCeEEEeec--CCCCCCCCCccEEEehhhhhhcCChh
Q 016157 124 SLVLDAGCGNGKYLGLNPDCFFVGC-----DISPSLIKICVDRGHEVLVADA--VNLPYRSDFGDAAISIAVLHHLSTES 196 (394)
Q Consensus 124 ~~VLDvGCG~G~~l~~~~~~~v~gv-----D~S~~~l~~a~~~~i~~~~~D~--~~lp~~~~~fD~Vi~~~vl~hl~~~~ 196 (394)
..+||||||+|.|..+.....|+.+ |..+..++.|.++|+..+.+-+ ..|||++++||+|.|..++..+....
T Consensus 119 R~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfaleRGvpa~~~~~~s~rLPfp~~~fDmvHcsrc~i~W~~~~ 198 (506)
T PF03141_consen 119 RTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALERGVPAMIGVLGSQRLPFPSNAFDMVHCSRCLIPWHPND 198 (506)
T ss_pred EEEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhhcCcchhhhhhccccccCCccchhhhhcccccccchhcc
Confidence 4689999999999775333333333 4455688999999988776664 57999999999999998877665432
Q ss_pred HHHHHHHHHHhccccCcEEEEEEcCcc
Q 016157 197 RRKKAIEELVRVVKKGSLVLITVWAVE 223 (394)
Q Consensus 197 ~~~~~L~ei~r~LkpGG~lli~~~~~~ 223 (394)
..+|-++-|+|||||+++.+.+...
T Consensus 199 --g~~l~evdRvLRpGGyfv~S~ppv~ 223 (506)
T PF03141_consen 199 --GFLLFEVDRVLRPGGYFVLSGPPVY 223 (506)
T ss_pred --cceeehhhhhhccCceEEecCCccc
Confidence 4689999999999999999876544
|
; GO: 0008168 methyltransferase activity |
| >COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.60 E-value=2.4e-07 Score=86.79 Aligned_cols=102 Identities=23% Similarity=0.281 Sum_probs=86.5
Q ss_pred cCCCCCCEEEEEcCccCcccc-----cCCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeecCCCCCCCCCccEEE
Q 016157 118 NSLPSGSLVLDAGCGNGKYLG-----LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAI 184 (394)
Q Consensus 118 ~~l~~g~~VLDvGCG~G~~l~-----~~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~lp~~~~~fD~Vi 184 (394)
..+.||++|||.|.|+|.++. ..+..+|+..|+-+..++.|+++ .+.+..+|+.+.-+.+ .||+|+
T Consensus 90 ~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~~-~vDav~ 168 (256)
T COG2519 90 LGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDEE-DVDAVF 168 (256)
T ss_pred cCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEecccccccccc-ccCEEE
Confidence 467899999999999999753 25778999999999999999987 3778889988866544 899998
Q ss_pred ehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCccchhhh
Q 016157 185 SIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKS 228 (394)
Q Consensus 185 ~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~~~~~~~ 228 (394)
.- +++ +.++|..+.++|||||.++++.+..+|-...
T Consensus 169 LD-----mp~---PW~~le~~~~~Lkpgg~~~~y~P~veQv~kt 204 (256)
T COG2519 169 LD-----LPD---PWNVLEHVSDALKPGGVVVVYSPTVEQVEKT 204 (256)
T ss_pred Ec-----CCC---hHHHHHHHHHHhCCCcEEEEEcCCHHHHHHH
Confidence 73 555 8999999999999999999999998886543
|
|
| >KOG2940 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.55 E-value=4.7e-08 Score=89.64 Aligned_cols=98 Identities=20% Similarity=0.243 Sum_probs=84.5
Q ss_pred CCEEEEEcCccCccccc--CCCc-EEEEEeCCHHHHHHHHHc---C--CeEEEeecCCCCCCCCCccEEEehhhhhhcCC
Q 016157 123 GSLVLDAGCGNGKYLGL--NPDC-FFVGCDISPSLIKICVDR---G--HEVLVADAVNLPYRSDFGDAAISIAVLHHLST 194 (394)
Q Consensus 123 g~~VLDvGCG~G~~l~~--~~~~-~v~gvD~S~~~l~~a~~~---~--i~~~~~D~~~lp~~~~~fD~Vi~~~vl~hl~~ 194 (394)
...++|||||-|...+. ..++ +++-+|.|..|++.|+.. + ...+.+|-+.|+|.++++|+|+++..+|++.+
T Consensus 73 fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~Ldf~ens~DLiisSlslHW~Nd 152 (325)
T KOG2940|consen 73 FPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDAQDPSIETSYFVGDEEFLDFKENSVDLIISSLSLHWTND 152 (325)
T ss_pred CcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhccCCCceEEEEEecchhcccccccchhhhhhhhhhhhhcc
Confidence 45789999999998654 2233 789999999999999876 2 45688999999999999999999999999988
Q ss_pred hhHHHHHHHHHHhccccCcEEEEEEcCcc
Q 016157 195 ESRRKKAIEELVRVVKKGSLVLITVWAVE 223 (394)
Q Consensus 195 ~~~~~~~L~ei~r~LkpGG~lli~~~~~~ 223 (394)
+...+..+...|||+|.|+-+.++.+
T Consensus 153 ---LPg~m~~ck~~lKPDg~Fiasmlggd 178 (325)
T KOG2940|consen 153 ---LPGSMIQCKLALKPDGLFIASMLGGD 178 (325)
T ss_pred ---CchHHHHHHHhcCCCccchhHHhccc
Confidence 78899999999999999998877654
|
|
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=98.55 E-value=2.1e-07 Score=92.11 Aligned_cols=99 Identities=18% Similarity=0.114 Sum_probs=72.5
Q ss_pred CCCCEEEEEcCccCcccc----cCCCcEEEEEeCCHHHHHHHHHc--------------CCeEEEeecCC-CCCCCCCcc
Q 016157 121 PSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR--------------GHEVLVADAVN-LPYRSDFGD 181 (394)
Q Consensus 121 ~~g~~VLDvGCG~G~~l~----~~~~~~v~gvD~S~~~l~~a~~~--------------~i~~~~~D~~~-lp~~~~~fD 181 (394)
+...+||+||||+|..++ ..+..+|+++|+++.+++.|++. +++++.+|+.+ +....+.||
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YD 228 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYD 228 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCcc
Confidence 334599999999998643 23446999999999999999961 56788899876 334457899
Q ss_pred EEEehhhhh--hcCChhHHHHHHHHHHhccccCcEEEEEE
Q 016157 182 AAISIAVLH--HLSTESRRKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 182 ~Vi~~~vl~--hl~~~~~~~~~L~ei~r~LkpGG~lli~~ 219 (394)
+|++...-. .......-..+++.+.+.|+|||++++..
T Consensus 229 VIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs 268 (374)
T PRK01581 229 VIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQS 268 (374)
T ss_pred EEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEec
Confidence 999974211 10111113678999999999999988764
|
|
| >PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.54 E-value=2.3e-07 Score=93.78 Aligned_cols=104 Identities=16% Similarity=0.149 Sum_probs=73.3
Q ss_pred HcCCCCCCEEEEEcCccCcccc--cCCC-cEEEEEeCCHHHHHHHHHc----C-----CeEEEeecCCCC--C--CCCCc
Q 016157 117 LNSLPSGSLVLDAGCGNGKYLG--LNPD-CFFVGCDISPSLIKICVDR----G-----HEVLVADAVNLP--Y--RSDFG 180 (394)
Q Consensus 117 l~~l~~g~~VLDvGCG~G~~l~--~~~~-~~v~gvD~S~~~l~~a~~~----~-----i~~~~~D~~~lp--~--~~~~f 180 (394)
+..+.+|.+|||+|||+|.+.- ...+ ..|+++|+|+.+++.|+++ + ++++++|+.+.. + ..++|
T Consensus 215 ~~~~~~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~f 294 (396)
T PRK15128 215 TRRYVENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKF 294 (396)
T ss_pred HHHhcCCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCC
Confidence 3344568899999999999742 2333 4899999999999999876 2 468899987642 1 24689
Q ss_pred cEEEehhhhhhcCCh-------hHHHHHHHHHHhccccCcEEEEEEcC
Q 016157 181 DAAISIAVLHHLSTE-------SRRKKAIEELVRVVKKGSLVLITVWA 221 (394)
Q Consensus 181 D~Vi~~~vl~hl~~~-------~~~~~~L~ei~r~LkpGG~lli~~~~ 221 (394)
|+|++.---. ..+. .....++..+.++|+|||.++.+..+
T Consensus 295 DlVilDPP~f-~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs 341 (396)
T PRK15128 295 DVIVMDPPKF-VENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCS 341 (396)
T ss_pred CEEEECCCCC-CCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 9999863210 1110 01345566788999999999987644
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.52 E-value=2.1e-07 Score=100.73 Aligned_cols=102 Identities=12% Similarity=0.090 Sum_probs=74.4
Q ss_pred HHHcCCCCCCEEEEEcCccCccccc--CCCc-EEEEEeCCHHHHHHHHHc---------CCeEEEeecCCCC-CCCCCcc
Q 016157 115 TFLNSLPSGSLVLDAGCGNGKYLGL--NPDC-FFVGCDISPSLIKICVDR---------GHEVLVADAVNLP-YRSDFGD 181 (394)
Q Consensus 115 ~~l~~l~~g~~VLDvGCG~G~~l~~--~~~~-~v~gvD~S~~~l~~a~~~---------~i~~~~~D~~~lp-~~~~~fD 181 (394)
.++..+..|.+|||+|||+|.+.-. ..+. .|+++|+|+.+++.|+++ .++++++|+.+.. -..++||
T Consensus 531 ~~~~~~~~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fD 610 (702)
T PRK11783 531 RMIGQMAKGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFD 610 (702)
T ss_pred HHHHHhcCCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcC
Confidence 4444555688999999999997432 2344 799999999999999886 2578999986532 1146899
Q ss_pred EEEehhh-----------hhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 016157 182 AAISIAV-----------LHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 182 ~Vi~~~v-----------l~hl~~~~~~~~~L~ei~r~LkpGG~lli~~ 219 (394)
+|++.-- ..... ....++..+.++|+|||.+++..
T Consensus 611 lIilDPP~f~~~~~~~~~~~~~~---~y~~l~~~a~~lL~~gG~l~~~~ 656 (702)
T PRK11783 611 LIFIDPPTFSNSKRMEDSFDVQR---DHVALIKDAKRLLRPGGTLYFSN 656 (702)
T ss_pred EEEECCCCCCCCCccchhhhHHH---HHHHHHHHHHHHcCCCCEEEEEe
Confidence 9998521 11111 14678888999999999998875
|
|
| >COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.51 E-value=4.1e-07 Score=89.03 Aligned_cols=109 Identities=27% Similarity=0.326 Sum_probs=84.8
Q ss_pred HHHHHHcCCCCCCEEEEEcCccCcccc--cCCCcEEEEEeCCHHHHHHHHHc----C---CeEEEe-ecCCCCCCCCCcc
Q 016157 112 KVATFLNSLPSGSLVLDAGCGNGKYLG--LNPDCFFVGCDISPSLIKICVDR----G---HEVLVA-DAVNLPYRSDFGD 181 (394)
Q Consensus 112 ~l~~~l~~l~~g~~VLDvGCG~G~~l~--~~~~~~v~gvD~S~~~l~~a~~~----~---i~~~~~-D~~~lp~~~~~fD 181 (394)
++..-++.+.+|..|||-=||||.++- ..-|+.++|+|++..|++-|+.+ + ..+... |+..+|++++++|
T Consensus 187 R~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lpl~~~~vd 266 (347)
T COG1041 187 RAMVNLARVKRGELVLDPFCGTGGILIEAGLMGARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLPLRDNSVD 266 (347)
T ss_pred HHHHHHhccccCCEeecCcCCccHHHHhhhhcCceEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCCCCCCccc
Confidence 344455678899999999999999864 36788999999999999999887 2 344555 9999999988999
Q ss_pred EEEehhh------hhhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 016157 182 AAISIAV------LHHLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (394)
Q Consensus 182 ~Vi~~~v------l~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~ 220 (394)
.|++--- +.-..-.+...++|+.+.++||+||++++..+
T Consensus 267 aIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 267 AIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred eEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 9988221 11111123368899999999999999999876
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.49 E-value=2.7e-07 Score=96.71 Aligned_cols=99 Identities=19% Similarity=0.126 Sum_probs=73.7
Q ss_pred CCCCEEEEEcCccCcccc---cCCC-cEEEEEeCCHHHHHHHHHc--------------CCeEEEeecCCC-CCCCCCcc
Q 016157 121 PSGSLVLDAGCGNGKYLG---LNPD-CFFVGCDISPSLIKICVDR--------------GHEVLVADAVNL-PYRSDFGD 181 (394)
Q Consensus 121 ~~g~~VLDvGCG~G~~l~---~~~~-~~v~gvD~S~~~l~~a~~~--------------~i~~~~~D~~~l-p~~~~~fD 181 (394)
++..+|||||||+|..+. ..+. .+++++|+++++++.|+++ +++++.+|+.+. ...+++||
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fD 375 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFD 375 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCC
Confidence 455799999999998753 2344 6999999999999999982 467888998763 23357899
Q ss_pred EEEehhhhhhcCChh--HHHHHHHHHHhccccCcEEEEEE
Q 016157 182 AAISIAVLHHLSTES--RRKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 182 ~Vi~~~vl~hl~~~~--~~~~~L~ei~r~LkpGG~lli~~ 219 (394)
+|++.......+... -..++++.+.+.|||||.+++..
T Consensus 376 vIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~ 415 (521)
T PRK03612 376 VIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQS 415 (521)
T ss_pred EEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEec
Confidence 999975432221100 02468999999999999999875
|
|
| >PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like | Back alignment and domain information |
|---|
Probab=98.49 E-value=3.1e-07 Score=84.42 Aligned_cols=96 Identities=15% Similarity=0.108 Sum_probs=71.1
Q ss_pred CCEEEEEcCccCcccc--cCCCc-EEEEEeCCHHHHHHHHHc------C-CeEEEeecCCCCCCCCCccEEEehhhhhhc
Q 016157 123 GSLVLDAGCGNGKYLG--LNPDC-FFVGCDISPSLIKICVDR------G-HEVLVADAVNLPYRSDFGDAAISIAVLHHL 192 (394)
Q Consensus 123 g~~VLDvGCG~G~~l~--~~~~~-~v~gvD~S~~~l~~a~~~------~-i~~~~~D~~~lp~~~~~fD~Vi~~~vl~hl 192 (394)
..+.||.|+|-|+.+. +.+-+ .|-.+|+.+..++.|++. + .++.+..+.++....++||+|.+-+++-|+
T Consensus 56 ~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lghL 135 (218)
T PF05891_consen 56 FNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCLGHL 135 (218)
T ss_dssp -SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-GGGS
T ss_pred cceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhhccC
Confidence 3589999999999764 23333 899999999999999954 1 356777777765556799999999999999
Q ss_pred CChhHHHHHHHHHHhccccCcEEEEEE
Q 016157 193 STESRRKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 193 ~~~~~~~~~L~ei~r~LkpGG~lli~~ 219 (394)
.+.+ ..++|+++...|+|+|.+++-.
T Consensus 136 TD~d-lv~fL~RCk~~L~~~G~IvvKE 161 (218)
T PF05891_consen 136 TDED-LVAFLKRCKQALKPNGVIVVKE 161 (218)
T ss_dssp -HHH-HHHHHHHHHHHEEEEEEEEEEE
T ss_pred CHHH-HHHHHHHHHHhCcCCcEEEEEe
Confidence 9866 8999999999999999998864
|
; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B. |
| >PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA [] | Back alignment and domain information |
|---|
Probab=98.49 E-value=4.7e-07 Score=85.64 Aligned_cols=106 Identities=21% Similarity=0.182 Sum_probs=81.0
Q ss_pred HHHHcCCCCCCEEEEEcCccCcccc-----cCCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeecCCCCCC---C
Q 016157 114 ATFLNSLPSGSLVLDAGCGNGKYLG-----LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYR---S 177 (394)
Q Consensus 114 ~~~l~~l~~g~~VLDvGCG~G~~l~-----~~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~lp~~---~ 177 (394)
......+.||++|||.|.|+|.++. ..+...|+..|+.+...+.|++. ++++.+.|+..-.|. +
T Consensus 32 I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~~~ 111 (247)
T PF08704_consen 32 ILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDEELE 111 (247)
T ss_dssp HHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--STT-T
T ss_pred HHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceeccccccccc
Confidence 3344568999999999999999743 36888999999999999999987 478999999754442 3
Q ss_pred CCccEEEehhhhhhcCChhHHHHHHHHHHhcc-ccCcEEEEEEcCccchhh
Q 016157 178 DFGDAAISIAVLHHLSTESRRKKAIEELVRVV-KKGSLVLITVWAVEQEDK 227 (394)
Q Consensus 178 ~~fD~Vi~~~vl~hl~~~~~~~~~L~ei~r~L-kpGG~lli~~~~~~~~~~ 227 (394)
..+|.|+.- +++ +..+|..+.++| ||||+++++.++.+|...
T Consensus 112 ~~~DavfLD-----lp~---Pw~~i~~~~~~L~~~gG~i~~fsP~ieQv~~ 154 (247)
T PF08704_consen 112 SDFDAVFLD-----LPD---PWEAIPHAKRALKKPGGRICCFSPCIEQVQK 154 (247)
T ss_dssp TSEEEEEEE-----SSS---GGGGHHHHHHHE-EEEEEEEEEESSHHHHHH
T ss_pred CcccEEEEe-----CCC---HHHHHHHHHHHHhcCCceEEEECCCHHHHHH
Confidence 679999873 556 788999999999 999999999999998643
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A. |
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=98.47 E-value=4.5e-07 Score=87.18 Aligned_cols=97 Identities=18% Similarity=0.119 Sum_probs=69.3
Q ss_pred CCEEEEEcCccCcccc----cCCCcEEEEEeCCHHHHHHHHHc-----------CCeEEEeecCC-CCCCCCCccEEEeh
Q 016157 123 GSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR-----------GHEVLVADAVN-LPYRSDFGDAAISI 186 (394)
Q Consensus 123 g~~VLDvGCG~G~~l~----~~~~~~v~gvD~S~~~l~~a~~~-----------~i~~~~~D~~~-lp~~~~~fD~Vi~~ 186 (394)
..+||+||||+|..+. ..+...++++|+++.+++.|++. +++++.+|... +....++||+|++.
T Consensus 73 p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi~D 152 (270)
T TIGR00417 73 PKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVIIVD 152 (270)
T ss_pred CCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEEEe
Confidence 3599999999998653 23345899999999999999874 35666777654 22225789999986
Q ss_pred hhhhhcCChh-HHHHHHHHHHhccccCcEEEEEE
Q 016157 187 AVLHHLSTES-RRKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 187 ~vl~hl~~~~-~~~~~L~ei~r~LkpGG~lli~~ 219 (394)
.....-+... -..++++.+.+.|+|||.+++..
T Consensus 153 ~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~ 186 (270)
T TIGR00417 153 STDPVGPAETLFTKEFYELLKKALNEDGIFVAQS 186 (270)
T ss_pred CCCCCCcccchhHHHHHHHHHHHhCCCcEEEEcC
Confidence 5422111100 03688999999999999999873
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=98.44 E-value=5.9e-07 Score=87.89 Aligned_cols=99 Identities=20% Similarity=0.200 Sum_probs=72.5
Q ss_pred CCCCEEEEEcCccCccccc---CCC-cEEEEEeCCHHHHHHHHHc-----------CCeEEEeecCCCC--CCCCCccEE
Q 016157 121 PSGSLVLDAGCGNGKYLGL---NPD-CFFVGCDISPSLIKICVDR-----------GHEVLVADAVNLP--YRSDFGDAA 183 (394)
Q Consensus 121 ~~g~~VLDvGCG~G~~l~~---~~~-~~v~gvD~S~~~l~~a~~~-----------~i~~~~~D~~~lp--~~~~~fD~V 183 (394)
+...+||+||||.|..++. .++ ..|+.+|+++.+++.|++. +++++.+|+...- .+++.||+|
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvI 169 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAI 169 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEE
Confidence 4567999999999997532 344 5899999999999999884 4788899975421 225689999
Q ss_pred EehhhhhhcCCh-hHHHHHHHHHHhccccCcEEEEEE
Q 016157 184 ISIAVLHHLSTE-SRRKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 184 i~~~vl~hl~~~-~~~~~~L~ei~r~LkpGG~lli~~ 219 (394)
++-..-.+.+.. ---..+++.+.++|+|||.+++..
T Consensus 170 i~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~ 206 (308)
T PLN02366 170 IVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQA 206 (308)
T ss_pred EEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECc
Confidence 986543322211 013578999999999999987653
|
|
| >KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=98.44 E-value=2e-07 Score=92.76 Aligned_cols=108 Identities=25% Similarity=0.308 Sum_probs=92.0
Q ss_pred HHHHHcCCCCCCEEEEEcCccCcccc---cCCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeecCCCCCCCCCcc
Q 016157 113 VATFLNSLPSGSLVLDAGCGNGKYLG---LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGD 181 (394)
Q Consensus 113 l~~~l~~l~~g~~VLDvGCG~G~~l~---~~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~lp~~~~~fD 181 (394)
+..+...+.++..++|+|||-|.... ......++|+|.++..+..+... ...++.+|+...|+.++.||
T Consensus 101 ~~~l~~~~~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd 180 (364)
T KOG1269|consen 101 IVALRESCFPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFD 180 (364)
T ss_pred hHHHhhcCcccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccC
Confidence 34455567888899999999998754 36778999999999877766544 34568899999999999999
Q ss_pred EEEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCcc
Q 016157 182 AAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVE 223 (394)
Q Consensus 182 ~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~~ 223 (394)
.+-++.+..|.++ ...+++|+.|+++|||++++..|...
T Consensus 181 ~v~~ld~~~~~~~---~~~~y~Ei~rv~kpGG~~i~~e~i~~ 219 (364)
T KOG1269|consen 181 GVRFLEVVCHAPD---LEKVYAEIYRVLKPGGLFIVKEWIKT 219 (364)
T ss_pred cEEEEeecccCCc---HHHHHHHHhcccCCCceEEeHHHHHh
Confidence 9999999999999 88999999999999999999988653
|
|
| >KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.43 E-value=3.2e-07 Score=83.28 Aligned_cols=94 Identities=23% Similarity=0.242 Sum_probs=77.0
Q ss_pred cCCCCCCEEEEEcCccCccccc------CCCcEEEEEeCCHHHHHHHHHc-----------------CCeEEEeecCCCC
Q 016157 118 NSLPSGSLVLDAGCGNGKYLGL------NPDCFFVGCDISPSLIKICVDR-----------------GHEVLVADAVNLP 174 (394)
Q Consensus 118 ~~l~~g~~VLDvGCG~G~~l~~------~~~~~v~gvD~S~~~l~~a~~~-----------------~i~~~~~D~~~lp 174 (394)
.++.||.+.||+|.|+|++... .++...+|||.-+++++.++++ .+.++.+|....-
T Consensus 78 ~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~ 157 (237)
T KOG1661|consen 78 DHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGY 157 (237)
T ss_pred HhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccC
Confidence 3578999999999999997532 4566679999999999999876 3578899998877
Q ss_pred CCCCCccEEEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 016157 175 YRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (394)
Q Consensus 175 ~~~~~fD~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~ 220 (394)
.....||.|.+.+. .....+++...|+|||++++-.-
T Consensus 158 ~e~a~YDaIhvGAa---------a~~~pq~l~dqL~~gGrllip~~ 194 (237)
T KOG1661|consen 158 AEQAPYDAIHVGAA---------ASELPQELLDQLKPGGRLLIPVG 194 (237)
T ss_pred CccCCcceEEEccC---------ccccHHHHHHhhccCCeEEEeec
Confidence 67789999999864 34566778888999999999864
|
|
| >COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.7e-06 Score=71.75 Aligned_cols=95 Identities=34% Similarity=0.597 Sum_probs=73.1
Q ss_pred EEEEcCccCc--ccc-cCCC-cEEEEEeCCHHHHHHHHHcC-------CeEEEeecCC--CCCCC-CCccEEEehhhhhh
Q 016157 126 VLDAGCGNGK--YLG-LNPD-CFFVGCDISPSLIKICVDRG-------HEVLVADAVN--LPYRS-DFGDAAISIAVLHH 191 (394)
Q Consensus 126 VLDvGCG~G~--~l~-~~~~-~~v~gvD~S~~~l~~a~~~~-------i~~~~~D~~~--lp~~~-~~fD~Vi~~~vl~h 191 (394)
+||+|||+|. ++. .... ..++|+|+++.++..++... +.+..+|... +++.. ..||++ +.....+
T Consensus 52 ~ld~~~g~g~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~~~ 130 (257)
T COG0500 52 VLDIGCGTGRLALLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLV-ISLLVLH 130 (257)
T ss_pred eEEecCCcCHHHHHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEE-eeeeehh
Confidence 9999999997 333 2232 58999999999998866553 5788888876 77766 489999 5554444
Q ss_pred cCChhHHHHHHHHHHhccccCcEEEEEEcCccc
Q 016157 192 LSTESRRKKAIEELVRVVKKGSLVLITVWAVEQ 224 (394)
Q Consensus 192 l~~~~~~~~~L~ei~r~LkpGG~lli~~~~~~~ 224 (394)
... ....+.++.+.|+|+|.+++.......
T Consensus 131 ~~~---~~~~~~~~~~~l~~~g~~~~~~~~~~~ 160 (257)
T COG0500 131 LLP---PAKALRELLRVLKPGGRLVLSDLLRDG 160 (257)
T ss_pred cCC---HHHHHHHHHHhcCCCcEEEEEeccCCC
Confidence 433 578999999999999999999876543
|
|
| >COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.41 E-value=7e-07 Score=85.36 Aligned_cols=95 Identities=14% Similarity=0.115 Sum_probs=78.5
Q ss_pred CCEEEEEcCccCcc--c------ccC-----CCcEEEEEeCCHHHHHHHHHc----------------------------
Q 016157 123 GSLVLDAGCGNGKY--L------GLN-----PDCFFVGCDISPSLIKICVDR---------------------------- 161 (394)
Q Consensus 123 g~~VLDvGCG~G~~--l------~~~-----~~~~v~gvD~S~~~l~~a~~~---------------------------- 161 (394)
.-+|+-+||+||.- . ... ..+.|+|+|++..+|+.|+.-
T Consensus 97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y 176 (268)
T COG1352 97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSY 176 (268)
T ss_pred ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcE
Confidence 46899999999982 1 112 357999999999999999842
Q ss_pred --------CCeEEEeecCCCCCCCCCccEEEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEE
Q 016157 162 --------GHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLIT 218 (394)
Q Consensus 162 --------~i~~~~~D~~~lp~~~~~fD~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~ 218 (394)
.+.|.+.|+..-++..+.||+|+|-.||-++..+. ..+++..++..|+|||.|++-
T Consensus 177 ~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~-q~~il~~f~~~L~~gG~LflG 240 (268)
T COG1352 177 RVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEET-QERILRRFADSLKPGGLLFLG 240 (268)
T ss_pred EEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHH-HHHHHHHHHHHhCCCCEEEEc
Confidence 36777888877664567899999999999998766 689999999999999999986
|
|
| >KOG2899 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.39 E-value=8.2e-07 Score=82.29 Aligned_cols=99 Identities=18% Similarity=0.270 Sum_probs=68.9
Q ss_pred cCCCCCCEEEEEcCccCcccc----cCCCcEEEEEeCCHHHHHHHHHc-----CCeE-----------------------
Q 016157 118 NSLPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR-----GHEV----------------------- 165 (394)
Q Consensus 118 ~~l~~g~~VLDvGCG~G~~l~----~~~~~~v~gvD~S~~~l~~a~~~-----~i~~----------------------- 165 (394)
...-.+..+|||||-+|.+.. ......|+|+||.+.+++.|++. ..+.
T Consensus 54 ~~~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a 133 (288)
T KOG2899|consen 54 KDWFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEA 133 (288)
T ss_pred ccccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccc
Confidence 334456789999999999753 23344799999999999999986 0000
Q ss_pred ---------------------EEeecCCCCCCCCCccEEEehhhhh--hcCC-hhHHHHHHHHHHhccccCcEEEEE
Q 016157 166 ---------------------LVADAVNLPYRSDFGDAAISIAVLH--HLST-ESRRKKAIEELVRVVKKGSLVLIT 218 (394)
Q Consensus 166 ---------------------~~~D~~~lp~~~~~fD~Vi~~~vl~--hl~~-~~~~~~~L~ei~r~LkpGG~lli~ 218 (394)
...|+. .+....||+|+|..+-- |+.. ++-+.++++.+.++|.|||+|++-
T Consensus 134 ~~a~t~~~p~n~~f~~~n~vle~~dfl--~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvE 208 (288)
T KOG2899|consen 134 DRAFTTDFPDNVWFQKENYVLESDDFL--DMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVE 208 (288)
T ss_pred cccccccCCcchhcccccEEEecchhh--hhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEc
Confidence 011111 23456899999865433 3332 233889999999999999999885
|
|
| >KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.37 E-value=4.9e-07 Score=88.09 Aligned_cols=97 Identities=19% Similarity=0.141 Sum_probs=73.2
Q ss_pred CCCCCCEEEEEcCccCcccc--cCC-CcEEEEEeCCHHHHHHHHHc--------CCeEEEeecCCCCCCCCCccEEEehh
Q 016157 119 SLPSGSLVLDAGCGNGKYLG--LNP-DCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISIA 187 (394)
Q Consensus 119 ~l~~g~~VLDvGCG~G~~l~--~~~-~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~lp~~~~~fD~Vi~~~ 187 (394)
.+-.+..|||||||+|.+.- +.. ...|+|+|.|.-+ +.|++- -++++++.++++.++....|+|++-+
T Consensus 57 ~lf~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia-~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEW 135 (346)
T KOG1499|consen 57 HLFKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIA-DFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEW 135 (346)
T ss_pred hhcCCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHH-HHHHHHHHhcCccceEEEeecceEEEecCccceeEEeehh
Confidence 35678999999999999742 233 3489999988654 555543 26889999988766678999999977
Q ss_pred hhhhcCChhHHHHHHHHHHhccccCcEEE
Q 016157 188 VLHHLSTESRRKKAIEELVRVVKKGSLVL 216 (394)
Q Consensus 188 vl~hl~~~~~~~~~L~ei~r~LkpGG~ll 216 (394)
.=+.+.-+.....+|-.=-+.|+|||.++
T Consensus 136 MGy~Ll~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 136 MGYFLLYESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred hhHHHHHhhhhhhhhhhhhhccCCCceEc
Confidence 66665544446777777778999999876
|
|
| >COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.1e-06 Score=82.12 Aligned_cols=96 Identities=21% Similarity=0.291 Sum_probs=75.0
Q ss_pred CEEEEEcCccCccc----ccCCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeecCCCC---CCCCCccEEEehhhh
Q 016157 124 SLVLDAGCGNGKYL----GLNPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLP---YRSDFGDAAISIAVL 189 (394)
Q Consensus 124 ~~VLDvGCG~G~~l----~~~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~lp---~~~~~fD~Vi~~~vl 189 (394)
..+||||||.|.++ ...|...++|||+....+..|.++ |+.++..|+..+- +++++.|-|..++--
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FPD 129 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFPD 129 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECCC
Confidence 48999999999975 358999999999999887776655 5678888887632 445699999987765
Q ss_pred hhcCChh--H---HHHHHHHHHhccccCcEEEEEE
Q 016157 190 HHLSTES--R---RKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 190 ~hl~~~~--~---~~~~L~ei~r~LkpGG~lli~~ 219 (394)
-|..... | -..+|+.+.++|||||.|.+.+
T Consensus 130 PWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aT 164 (227)
T COG0220 130 PWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFAT 164 (227)
T ss_pred CCCCccccccccCCHHHHHHHHHHccCCCEEEEEe
Confidence 4443321 1 2679999999999999999987
|
|
| >PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.33 E-value=1.3e-06 Score=85.83 Aligned_cols=92 Identities=13% Similarity=0.160 Sum_probs=65.0
Q ss_pred CCCEEEEEcCccCcccc--cCCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeecCCCCC-CCCCccEEEehhhhhh
Q 016157 122 SGSLVLDAGCGNGKYLG--LNPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPY-RSDFGDAAISIAVLHH 191 (394)
Q Consensus 122 ~g~~VLDvGCG~G~~l~--~~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~lp~-~~~~fD~Vi~~~vl~h 191 (394)
++.+|||+|||+|.++. ..++..|+|+|+++.+++.|+++ +++++++|+.++.. ..+.||+|++.---..
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~~~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~dPPr~G 252 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCATPGMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQGEVPDLVLVNPPRRG 252 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEECCCCCC
Confidence 45799999999999753 24557999999999999999876 47899999987542 2357999998732111
Q ss_pred cCChhHHHHHHHHHHhccccCcEEEEEE
Q 016157 192 LSTESRRKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 192 l~~~~~~~~~L~ei~r~LkpGG~lli~~ 219 (394)
....+.++...++|++.++++.
T Consensus 253 ------~~~~~~~~l~~~~~~~ivyvsc 274 (315)
T PRK03522 253 ------IGKELCDYLSQMAPRFILYSSC 274 (315)
T ss_pred ------ccHHHHHHHHHcCCCeEEEEEC
Confidence 1222333344467887777765
|
|
| >PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.32 E-value=2.4e-06 Score=87.87 Aligned_cols=93 Identities=15% Similarity=0.190 Sum_probs=68.1
Q ss_pred CCCCCEEEEEcCccCccccc--CCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeecCC----CCCCCCCccEEEeh
Q 016157 120 LPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVN----LPYRSDFGDAAISI 186 (394)
Q Consensus 120 l~~g~~VLDvGCG~G~~l~~--~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~----lp~~~~~fD~Vi~~ 186 (394)
+.++.+|||+|||+|.++.. .....|+|+|+|+.|++.|+++ +++++.+|+.+ +++.+++||+|++.
T Consensus 295 ~~~~~~VLDlgcGtG~~sl~la~~~~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~~~~~~fD~Vi~d 374 (443)
T PRK13168 295 PQPGDRVLDLFCGLGNFTLPLARQAAEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQPWALGGFDKVLLD 374 (443)
T ss_pred CCCCCEEEEEeccCCHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhhhhcCCCCEEEEC
Confidence 45778999999999997432 2346899999999999999875 47899999865 23445789999985
Q ss_pred hhhhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 016157 187 AVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 187 ~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~ 219 (394)
---. . ....++.+.+ ++|++.++++.
T Consensus 375 PPr~-----g-~~~~~~~l~~-~~~~~ivyvSC 400 (443)
T PRK13168 375 PPRA-----G-AAEVMQALAK-LGPKRIVYVSC 400 (443)
T ss_pred cCCc-----C-hHHHHHHHHh-cCCCeEEEEEe
Confidence 3211 1 2345555555 68999888885
|
|
| >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.30 E-value=2.6e-06 Score=82.31 Aligned_cols=93 Identities=23% Similarity=0.341 Sum_probs=66.7
Q ss_pred EEEEEcCccCccc----ccCCCcEEEEEeCCHHHHHHHHHc----C---CeEEEeecCCCCCCCCCccEEEehhh-----
Q 016157 125 LVLDAGCGNGKYL----GLNPDCFFVGCDISPSLIKICVDR----G---HEVLVADAVNLPYRSDFGDAAISIAV----- 188 (394)
Q Consensus 125 ~VLDvGCG~G~~l----~~~~~~~v~gvD~S~~~l~~a~~~----~---i~~~~~D~~~lp~~~~~fD~Vi~~~v----- 188 (394)
+|||+|||+|..+ ...+...|+|+|+|+.+++.|+++ + +.++++|...- . .++||+|+++--
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~~-~-~~~fDlIVsNPPYip~~ 190 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFEP-L-RGKFDLIVSNPPYIPAE 190 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeecccc-c-CCceeEEEeCCCCCCCc
Confidence 7999999999964 236667999999999999999887 4 34555554442 2 348999999531
Q ss_pred hhhcCCh-----------------hHHHHHHHHHHhccccCcEEEEEE
Q 016157 189 LHHLSTE-----------------SRRKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 189 l~hl~~~-----------------~~~~~~L~ei~r~LkpGG~lli~~ 219 (394)
..+.... +-..+++.++.+.|+|||.+++..
T Consensus 191 ~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~ 238 (280)
T COG2890 191 DPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEI 238 (280)
T ss_pred ccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEE
Confidence 1111110 114678889999999999988875
|
|
| >PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein | Back alignment and domain information |
|---|
Probab=98.30 E-value=1.8e-06 Score=79.18 Aligned_cols=90 Identities=14% Similarity=0.124 Sum_probs=75.4
Q ss_pred CEEEEEcCccCcc-cccCCCcEEEEEeCCHHHHHHHHHcCCeEEEeecCCCCCC---CCCccEEEehhhhhhcCChhHHH
Q 016157 124 SLVLDAGCGNGKY-LGLNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYR---SDFGDAAISIAVLHHLSTESRRK 199 (394)
Q Consensus 124 ~~VLDvGCG~G~~-l~~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~lp~~---~~~fD~Vi~~~vl~hl~~~~~~~ 199 (394)
.++|||||=+... .....-.+|+.||+++. .-.+.+.|+.+.|.+ ++.||+|.++-||.+++++..+-
T Consensus 53 lrlLEVGals~~N~~s~~~~fdvt~IDLns~--------~~~I~qqDFm~rplp~~~~e~FdvIs~SLVLNfVP~p~~RG 124 (219)
T PF11968_consen 53 LRLLEVGALSTDNACSTSGWFDVTRIDLNSQ--------HPGILQQDFMERPLPKNESEKFDVISLSLVLNFVPDPKQRG 124 (219)
T ss_pred ceEEeecccCCCCcccccCceeeEEeecCCC--------CCCceeeccccCCCCCCcccceeEEEEEEEEeeCCCHHHHH
Confidence 5899999986554 33345568999999872 345789999998764 67999999999999999999999
Q ss_pred HHHHHHHhccccCcE-----EEEEEcC
Q 016157 200 KAIEELVRVVKKGSL-----VLITVWA 221 (394)
Q Consensus 200 ~~L~ei~r~LkpGG~-----lli~~~~ 221 (394)
+.++.+.+.|+|+|. |++..+.
T Consensus 125 ~Ml~r~~~fL~~~g~~~~~~LFlVlP~ 151 (219)
T PF11968_consen 125 EMLRRAHKFLKPPGLSLFPSLFLVLPL 151 (219)
T ss_pred HHHHHHHHHhCCCCccCcceEEEEeCc
Confidence 999999999999999 8887754
|
|
| >PLN02476 O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.29 E-value=2.3e-06 Score=82.31 Aligned_cols=102 Identities=14% Similarity=0.151 Sum_probs=77.7
Q ss_pred HHHHHHcCCCCCCEEEEEcCccCccc----cc-CCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeecCCC-C-C-
Q 016157 112 KVATFLNSLPSGSLVLDAGCGNGKYL----GL-NPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNL-P-Y- 175 (394)
Q Consensus 112 ~l~~~l~~l~~g~~VLDvGCG~G~~l----~~-~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~l-p-~- 175 (394)
.+..++.......+|||||+|+|..+ .. .++..++++|.+++.++.|++. .++++.+|+.+. + +
T Consensus 108 ~lL~~L~~~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~ 187 (278)
T PLN02476 108 QLLAMLVQILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMI 187 (278)
T ss_pred HHHHHHHHhcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHH
Confidence 34555555666789999999999853 22 3466899999999999999876 478899998662 2 1
Q ss_pred ---CCCCccEEEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 016157 176 ---RSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 176 ---~~~~fD~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~ 219 (394)
..++||+|+.-+- ......+++.+.++|+|||.+++..
T Consensus 188 ~~~~~~~FD~VFIDa~------K~~Y~~y~e~~l~lL~~GGvIV~DN 228 (278)
T PLN02476 188 QNGEGSSYDFAFVDAD------KRMYQDYFELLLQLVRVGGVIVMDN 228 (278)
T ss_pred hcccCCCCCEEEECCC------HHHHHHHHHHHHHhcCCCcEEEEec
Confidence 1368999998653 2225788999999999999999874
|
|
| >PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.28 E-value=3.8e-06 Score=77.16 Aligned_cols=97 Identities=10% Similarity=0.049 Sum_probs=68.8
Q ss_pred CCCCEEEEEcCccCcccc--c-CCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeecCCC-CCCCCCccEEEehhhh
Q 016157 121 PSGSLVLDAGCGNGKYLG--L-NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNL-PYRSDFGDAAISIAVL 189 (394)
Q Consensus 121 ~~g~~VLDvGCG~G~~l~--~-~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~l-p~~~~~fD~Vi~~~vl 189 (394)
.++.+|||+|||+|.+.- . .....|+++|+++.+++.++++ +++++.+|+.+. +.....||+|++.--.
T Consensus 52 ~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~~~~fDlV~~DPPy 131 (199)
T PRK10909 52 IVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQPGTPHNVVFVDPPF 131 (199)
T ss_pred cCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhcCCCceEEEECCCC
Confidence 356799999999998752 2 2235899999999999988876 367889998763 2224579999997653
Q ss_pred hhcCChhHHHHHHHHHHh--ccccCcEEEEEEcC
Q 016157 190 HHLSTESRRKKAIEELVR--VVKKGSLVLITVWA 221 (394)
Q Consensus 190 ~hl~~~~~~~~~L~ei~r--~LkpGG~lli~~~~ 221 (394)
.. . ....+++.+.. +|+|+|.+++....
T Consensus 132 ~~--g--~~~~~l~~l~~~~~l~~~~iv~ve~~~ 161 (199)
T PRK10909 132 RK--G--LLEETINLLEDNGWLADEALIYVESEV 161 (199)
T ss_pred CC--C--hHHHHHHHHHHCCCcCCCcEEEEEecC
Confidence 21 1 13445555554 37999988888654
|
|
| >COG4122 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.28 E-value=2.5e-06 Score=79.06 Aligned_cols=106 Identities=16% Similarity=0.161 Sum_probs=79.5
Q ss_pred HHHHHHcCCCCCCEEEEEcCccCccc----ccCC-CcEEEEEeCCHHHHHHHHHc--------CCeEEE-eecCCCC--C
Q 016157 112 KVATFLNSLPSGSLVLDAGCGNGKYL----GLNP-DCFFVGCDISPSLIKICVDR--------GHEVLV-ADAVNLP--Y 175 (394)
Q Consensus 112 ~l~~~l~~l~~g~~VLDvGCG~G~~l----~~~~-~~~v~gvD~S~~~l~~a~~~--------~i~~~~-~D~~~lp--~ 175 (394)
.+..++..+....+|||||.+.|+-+ ...+ ..+++.+|+++++.+.|++. .++++. +|..+.- .
T Consensus 49 ~~L~~L~~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~ 128 (219)
T COG4122 49 ALLRLLARLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRL 128 (219)
T ss_pred HHHHHHHHhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhc
Confidence 34555556667789999999999842 3334 67999999999999999987 256666 4765532 3
Q ss_pred CCCCccEEEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCcc
Q 016157 176 RSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVE 223 (394)
Q Consensus 176 ~~~~fD~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~~ 223 (394)
..++||+|+.-+. ...-..++..+.++|+|||.+++......
T Consensus 129 ~~~~fDliFIDad------K~~yp~~le~~~~lLr~GGliv~DNvl~~ 170 (219)
T COG4122 129 LDGSFDLVFIDAD------KADYPEYLERALPLLRPGGLIVADNVLFG 170 (219)
T ss_pred cCCCccEEEEeCC------hhhCHHHHHHHHHHhCCCcEEEEeecccC
Confidence 4689999998653 22257899999999999999999875443
|
|
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.26 E-value=6.9e-06 Score=70.36 Aligned_cols=95 Identities=16% Similarity=0.100 Sum_probs=71.7
Q ss_pred CCCEEEEEcCccCc-ccc--cCCCcEEEEEeCCHHHHHHHHHcCCeEEEeecCCCCCC-CCCccEEEehhhhhhcCChhH
Q 016157 122 SGSLVLDAGCGNGK-YLG--LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYR-SDFGDAAISIAVLHHLSTESR 197 (394)
Q Consensus 122 ~g~~VLDvGCG~G~-~l~--~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~lp~~-~~~fD~Vi~~~vl~hl~~~~~ 197 (394)
.+.++||||||+|. .+. ...+.+|+|+|+++..++.+++.++.++.+|+.+.++. -..+|+|.++-. .++
T Consensus 16 ~~~kileIG~GfG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~~~~~v~dDlf~p~~~~y~~a~liysirp-----p~e- 89 (134)
T PRK04148 16 KNKKIVELGIGFYFKVAKKLKESGFDVIVIDINEKAVEKAKKLGLNAFVDDLFNPNLEIYKNAKLIYSIRP-----PRD- 89 (134)
T ss_pred cCCEEEEEEecCCHHHHHHHHHCCCEEEEEECCHHHHHHHHHhCCeEEECcCCCCCHHHHhcCCEEEEeCC-----CHH-
Confidence 35789999999996 432 24578999999999999999999999999999986643 366899998753 222
Q ss_pred HHHHHHHHHhccccCcEEEEEEcCccc
Q 016157 198 RKKAIEELVRVVKKGSLVLITVWAVEQ 224 (394)
Q Consensus 198 ~~~~L~ei~r~LkpGG~lli~~~~~~~ 224 (394)
....+.++++. -|.-++|...+.+.
T Consensus 90 l~~~~~~la~~--~~~~~~i~~l~~e~ 114 (134)
T PRK04148 90 LQPFILELAKK--INVPLIIKPLSGEE 114 (134)
T ss_pred HHHHHHHHHHH--cCCCEEEEcCCCCC
Confidence 55666666664 45667777766654
|
|
| >COG3963 Phospholipid N-methyltransferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=98.25 E-value=4.2e-06 Score=73.59 Aligned_cols=102 Identities=22% Similarity=0.245 Sum_probs=86.9
Q ss_pred CCCCCEEEEEcCccCccccc-----CCCcEEEEEeCCHHHHHHHHHc--CCeEEEeecCCCC-----CCCCCccEEEehh
Q 016157 120 LPSGSLVLDAGCGNGKYLGL-----NPDCFFVGCDISPSLIKICVDR--GHEVLVADAVNLP-----YRSDFGDAAISIA 187 (394)
Q Consensus 120 l~~g~~VLDvGCG~G~~l~~-----~~~~~v~gvD~S~~~l~~a~~~--~i~~~~~D~~~lp-----~~~~~fD~Vi~~~ 187 (394)
...|.-|||+|.|||.+.++ .+...+++++.|+.......++ +..++.+|+.++. +.+..||.|+|.-
T Consensus 46 pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~~~ii~gda~~l~~~l~e~~gq~~D~viS~l 125 (194)
T COG3963 46 PESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPGVNIINGDAFDLRTTLGEHKGQFFDSVISGL 125 (194)
T ss_pred cccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCCccccccchhhHHHHHhhcCCCeeeeEEecc
Confidence 45677999999999998653 4556899999999999998887 7889999998875 5567899999999
Q ss_pred hhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCc
Q 016157 188 VLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAV 222 (394)
Q Consensus 188 vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~ 222 (394)
-+-.++... +.+.|+.+...|.+||.++-..++.
T Consensus 126 Pll~~P~~~-~iaile~~~~rl~~gg~lvqftYgp 159 (194)
T COG3963 126 PLLNFPMHR-RIAILESLLYRLPAGGPLVQFTYGP 159 (194)
T ss_pred ccccCcHHH-HHHHHHHHHHhcCCCCeEEEEEecC
Confidence 888888755 7899999999999999999988873
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=98.22 E-value=3.1e-06 Score=94.31 Aligned_cols=98 Identities=20% Similarity=0.179 Sum_probs=70.0
Q ss_pred CCEEEEEcCccCcccc----cCCCcEEEEEeCCHHHHHHHHHc-----------------------CCeEEEeecCCCCC
Q 016157 123 GSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR-----------------------GHEVLVADAVNLPY 175 (394)
Q Consensus 123 g~~VLDvGCG~G~~l~----~~~~~~v~gvD~S~~~l~~a~~~-----------------------~i~~~~~D~~~lp~ 175 (394)
+.+|||+|||+|.+.. ..+...++|+|+|+.+++.|+++ +++++++|+.+...
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~ 198 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR 198 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence 4689999999999642 35667999999999999998654 26789999876432
Q ss_pred C-CCCccEEEehhh------hhhcCCh-----------------------------hHHHHHHHHHHhccccCcEEEEEE
Q 016157 176 R-SDFGDAAISIAV------LHHLSTE-----------------------------SRRKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 176 ~-~~~fD~Vi~~~v------l~hl~~~-----------------------------~~~~~~L~ei~r~LkpGG~lli~~ 219 (394)
. ...||+|+++-- +..+... .-..+++.++.++|+|||.+++-.
T Consensus 199 ~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lEi 278 (1082)
T PLN02672 199 DNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFNM 278 (1082)
T ss_pred ccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence 1 236999999532 1111100 012677888999999999988876
Q ss_pred c
Q 016157 220 W 220 (394)
Q Consensus 220 ~ 220 (394)
-
T Consensus 279 G 279 (1082)
T PLN02672 279 G 279 (1082)
T ss_pred C
Confidence 4
|
|
| >COG2521 Predicted archaeal methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.21 E-value=1.4e-06 Score=80.38 Aligned_cols=114 Identities=18% Similarity=0.230 Sum_probs=86.4
Q ss_pred ccchHHHHHHHcCC--CCCCEEEEEcCccCcccc--cCCCc-EEEEEeCCHHHHHHHHHc---------CCeEEEeecCC
Q 016157 107 FAKWPKVATFLNSL--PSGSLVLDAGCGNGKYLG--LNPDC-FFVGCDISPSLIKICVDR---------GHEVLVADAVN 172 (394)
Q Consensus 107 ~~~~~~l~~~l~~l--~~g~~VLDvGCG~G~~l~--~~~~~-~v~gvD~S~~~l~~a~~~---------~i~~~~~D~~~ 172 (394)
..+|.....-+... +.|.+|||.+.|-|+.+. ...|+ .|+-++-++..++.|.-+ +++++.+|+.+
T Consensus 117 tdP~~Dt~~Kv~~V~~~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e 196 (287)
T COG2521 117 TDPLEDTLAKVELVKVKRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYE 196 (287)
T ss_pred cCcHHHHHhhhheeccccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHH
Confidence 35565555444443 458999999999999753 46676 999999999999988765 57999999987
Q ss_pred C--CCCCCCccEEEehhh-hh---hcCChhHHHHHHHHHHhccccCcEEEEEEcCccc
Q 016157 173 L--PYRSDFGDAAISIAV-LH---HLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQ 224 (394)
Q Consensus 173 l--p~~~~~fD~Vi~~~v-l~---hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~~~ 224 (394)
+ .|++++||+||---- +. ++- -.++-++++|+|||||+++-++-+..+
T Consensus 197 ~V~~~~D~sfDaIiHDPPRfS~AgeLY----seefY~El~RiLkrgGrlFHYvG~Pg~ 250 (287)
T COG2521 197 VVKDFDDESFDAIIHDPPRFSLAGELY----SEEFYRELYRILKRGGRLFHYVGNPGK 250 (287)
T ss_pred HHhcCCccccceEeeCCCccchhhhHh----HHHHHHHHHHHcCcCCcEEEEeCCCCc
Confidence 4 378999999986211 11 232 478899999999999999999866543
|
|
| >COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.21 E-value=4.1e-06 Score=75.21 Aligned_cols=81 Identities=23% Similarity=0.290 Sum_probs=60.5
Q ss_pred CCCCEEEEEcCccCcccc---cCCCcEEEEEeCCHHHHHHHHHc------CCeEEEeecCCCCCCCCCccEEEehhh---
Q 016157 121 PSGSLVLDAGCGNGKYLG---LNPDCFFVGCDISPSLIKICVDR------GHEVLVADAVNLPYRSDFGDAAISIAV--- 188 (394)
Q Consensus 121 ~~g~~VLDvGCG~G~~l~---~~~~~~v~gvD~S~~~l~~a~~~------~i~~~~~D~~~lp~~~~~fD~Vi~~~v--- 188 (394)
-.|..|+|+|||||.+.- +..-..|+|+|+.++++++++++ +++|+.+|+.+. ...||.++++--
T Consensus 44 l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~~~---~~~~dtvimNPPFG~ 120 (198)
T COG2263 44 LEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEELLGDVEFVVADVSDF---RGKFDTVIMNPPFGS 120 (198)
T ss_pred cCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhhCCceEEEEcchhhc---CCccceEEECCCCcc
Confidence 357789999999999742 23446899999999999999987 489999999987 466888888643
Q ss_pred -hhhcCChhHHHHHHHHHHhcc
Q 016157 189 -LHHLSTESRRKKAIEELVRVV 209 (394)
Q Consensus 189 -l~hl~~~~~~~~~L~ei~r~L 209 (394)
..| .+ ..+|..+.++-
T Consensus 121 ~~rh-aD----r~Fl~~Ale~s 137 (198)
T COG2263 121 QRRH-AD----RPFLLKALEIS 137 (198)
T ss_pred cccc-CC----HHHHHHHHHhh
Confidence 344 33 34555555543
|
|
| >PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases | Back alignment and domain information |
|---|
Probab=98.20 E-value=3.9e-06 Score=77.45 Aligned_cols=100 Identities=19% Similarity=0.179 Sum_probs=73.8
Q ss_pred HHHcCCCCCCEEEEEcCccCccc----cc-CCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeecCCC-C-----C
Q 016157 115 TFLNSLPSGSLVLDAGCGNGKYL----GL-NPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNL-P-----Y 175 (394)
Q Consensus 115 ~~l~~l~~g~~VLDvGCG~G~~l----~~-~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~l-p-----~ 175 (394)
.++.......+||||||++|+-+ .. .++.+++.+|+++...+.|++. .++++.+|+.+. + .
T Consensus 38 ~~l~~~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~ 117 (205)
T PF01596_consen 38 QMLVRLTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDG 117 (205)
T ss_dssp HHHHHHHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTT
T ss_pred HHHHHhcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhcc
Confidence 33333334569999999999842 22 3568999999999999999875 478999998762 2 1
Q ss_pred CCCCccEEEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 016157 176 RSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (394)
Q Consensus 176 ~~~~fD~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~ 220 (394)
..+.||+|+.-+-- ..-...+..+.++|+|||.+++..-
T Consensus 118 ~~~~fD~VFiDa~K------~~y~~y~~~~~~ll~~ggvii~DN~ 156 (205)
T PF01596_consen 118 EEGQFDFVFIDADK------RNYLEYFEKALPLLRPGGVIIADNV 156 (205)
T ss_dssp TTTSEEEEEEESTG------GGHHHHHHHHHHHEEEEEEEEEETT
T ss_pred CCCceeEEEEcccc------cchhhHHHHHhhhccCCeEEEEccc
Confidence 13589999987632 2256788899999999999999853
|
The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A .... |
| >TIGR00478 tly hemolysin TlyA family protein | Back alignment and domain information |
|---|
Probab=98.14 E-value=8.5e-06 Score=76.34 Aligned_cols=87 Identities=11% Similarity=0.095 Sum_probs=57.3
Q ss_pred CCCCEEEEEcCccCccccc--CCC-cEEEEEeCCHHHHHHHHHcCCe---EEEeecCCCCC-----CCCCccEEEehhhh
Q 016157 121 PSGSLVLDAGCGNGKYLGL--NPD-CFFVGCDISPSLIKICVDRGHE---VLVADAVNLPY-----RSDFGDAAISIAVL 189 (394)
Q Consensus 121 ~~g~~VLDvGCG~G~~l~~--~~~-~~v~gvD~S~~~l~~a~~~~i~---~~~~D~~~lp~-----~~~~fD~Vi~~~vl 189 (394)
.++..|||+|||||.++.. ..+ ..|+|+|+++.|+....+.+.. +...|+..+.. .-..+|+++++.
T Consensus 74 ~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l~~~~~v~~~~~~ni~~~~~~~~~~d~~~~DvsfiS~-- 151 (228)
T TIGR00478 74 VKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLRQDERVKVLERTNIRYVTPADIFPDFATFDVSFISL-- 151 (228)
T ss_pred CCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHhcCCCeeEeecCCcccCCHhHcCCCceeeeEEEeeh--
Confidence 4678999999999998542 233 4899999999888763333222 33445553321 113567666543
Q ss_pred hhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 016157 190 HHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 190 ~hl~~~~~~~~~L~ei~r~LkpGG~lli~~ 219 (394)
...|..+.++|+| |.+++.+
T Consensus 152 ---------~~~l~~i~~~l~~-~~~~~L~ 171 (228)
T TIGR00478 152 ---------ISILPELDLLLNP-NDLTLLF 171 (228)
T ss_pred ---------HhHHHHHHHHhCc-CeEEEEc
Confidence 3357889999999 7776665
|
Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479). |
| >PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional | Back alignment and domain information |
|---|
Probab=98.14 E-value=4e-06 Score=80.04 Aligned_cols=68 Identities=19% Similarity=0.218 Sum_probs=55.8
Q ss_pred CCCCCEEEEEcCccCccccc--CCCcEEEEEeCCHHHHHHHHHc-----CCeEEEeecCCCCCCCCCccEEEehhhh
Q 016157 120 LPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR-----GHEVLVADAVNLPYRSDFGDAAISIAVL 189 (394)
Q Consensus 120 l~~g~~VLDvGCG~G~~l~~--~~~~~v~gvD~S~~~l~~a~~~-----~i~~~~~D~~~lp~~~~~fD~Vi~~~vl 189 (394)
+.++.+|||||||+|.++.. ..+..++|+|+++.|++.++++ +++++.+|+..++++ .||.|+++--.
T Consensus 27 ~~~~~~VLEIG~G~G~lt~~L~~~~~~v~~vEid~~~~~~l~~~~~~~~~v~ii~~D~~~~~~~--~~d~Vv~NlPy 101 (258)
T PRK14896 27 DTDGDPVLEIGPGKGALTDELAKRAKKVYAIELDPRLAEFLRDDEIAAGNVEIIEGDALKVDLP--EFNKVVSNLPY 101 (258)
T ss_pred CCCcCeEEEEeCccCHHHHHHHHhCCEEEEEECCHHHHHHHHHHhccCCCEEEEEeccccCCch--hceEEEEcCCc
Confidence 45788999999999997542 2356899999999999999875 588999999998764 48999987654
|
|
| >PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.13 E-value=2.8e-06 Score=81.83 Aligned_cols=69 Identities=16% Similarity=0.156 Sum_probs=54.4
Q ss_pred CCCCCEEEEEcCccCccccc--CCCcEEEEEeCCHHHHHHHHHc----CCeEEEeecCCCCCCCCCccEEEehhh
Q 016157 120 LPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR----GHEVLVADAVNLPYRSDFGDAAISIAV 188 (394)
Q Consensus 120 l~~g~~VLDvGCG~G~~l~~--~~~~~v~gvD~S~~~l~~a~~~----~i~~~~~D~~~lp~~~~~fD~Vi~~~v 188 (394)
+.++.+|||||||+|.++.. ..+..++|+|+++.|++.++++ +++++++|+..+++.+-.+|.|+++--
T Consensus 40 ~~~~~~VLEiG~G~G~lt~~L~~~~~~v~avE~d~~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~vv~NlP 114 (272)
T PRK00274 40 PQPGDNVLEIGPGLGALTEPLLERAAKVTAVEIDRDLAPILAETFAEDNLTIIEGDALKVDLSELQPLKVVANLP 114 (272)
T ss_pred CCCcCeEEEeCCCccHHHHHHHHhCCcEEEEECCHHHHHHHHHhhccCceEEEEChhhcCCHHHcCcceEEEeCC
Confidence 45778999999999997542 2234899999999999999875 688999999998865422578877643
|
|
| >PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=98.10 E-value=3e-05 Score=74.12 Aligned_cols=98 Identities=17% Similarity=0.202 Sum_probs=79.5
Q ss_pred CCCEEEEEcCccCcccc----cCCC--cEEEEEeCCHHHHHHHHHc-------CC-eEEEeecCCCC---CCCCCccEEE
Q 016157 122 SGSLVLDAGCGNGKYLG----LNPD--CFFVGCDISPSLIKICVDR-------GH-EVLVADAVNLP---YRSDFGDAAI 184 (394)
Q Consensus 122 ~g~~VLDvGCG~G~~l~----~~~~--~~v~gvD~S~~~l~~a~~~-------~i-~~~~~D~~~lp---~~~~~fD~Vi 184 (394)
..-+||||.||.|.|+- ..+. ..+.-.|.|+..++..++. ++ +|.++|+.+.. --+-..++++
T Consensus 135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~i 214 (311)
T PF12147_consen 135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLAI 214 (311)
T ss_pred CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEEE
Confidence 44699999999999842 2333 5899999999999887764 34 89999988732 1134569999
Q ss_pred ehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 016157 185 SIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 185 ~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~ 219 (394)
.++.++.+++.+.....|+-+.+++.|||.++.+.
T Consensus 215 VsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTg 249 (311)
T PF12147_consen 215 VSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTG 249 (311)
T ss_pred EecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcC
Confidence 99999999998877889999999999999988875
|
It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily. |
| >PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.09 E-value=2.6e-05 Score=74.12 Aligned_cols=101 Identities=18% Similarity=0.119 Sum_probs=70.1
Q ss_pred CCCCEEEEEcCccCcccc--cCCCc-EEEEEeCCHHHHHHHHHc-----------------------------------C
Q 016157 121 PSGSLVLDAGCGNGKYLG--LNPDC-FFVGCDISPSLIKICVDR-----------------------------------G 162 (394)
Q Consensus 121 ~~g~~VLDvGCG~G~~l~--~~~~~-~v~gvD~S~~~l~~a~~~-----------------------------------~ 162 (394)
..|.++||||||+-.+-. +.+.+ +|+..|.++.-++..++. .
T Consensus 55 ~~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~~ 134 (256)
T PF01234_consen 55 VKGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRRA 134 (256)
T ss_dssp S-EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHHh
Confidence 356799999999977632 23333 799999988776644431 1
Q ss_pred C-eEEEeecCCCC-CCC-----CCccEEEehhhhhhcC-ChhHHHHHHHHHHhccccCcEEEEEEcC
Q 016157 163 H-EVLVADAVNLP-YRS-----DFGDAAISIAVLHHLS-TESRRKKAIEELVRVVKKGSLVLITVWA 221 (394)
Q Consensus 163 i-~~~~~D~~~lp-~~~-----~~fD~Vi~~~vl~hl~-~~~~~~~~L~ei~r~LkpGG~lli~~~~ 221 (394)
+ .++.+|+...+ +.. ..||+|++..+++... +.+.-.++++++.++|||||.|++....
T Consensus 135 Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l 201 (256)
T PF01234_consen 135 VKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVL 201 (256)
T ss_dssp EEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEES
T ss_pred hceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEc
Confidence 2 47889998754 222 3599999999999876 4456789999999999999999998764
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A .... |
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.09 E-value=4.3e-06 Score=87.31 Aligned_cols=98 Identities=13% Similarity=0.212 Sum_probs=74.4
Q ss_pred CCCEEEEEcCccCcccc----cCCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeecCCCC--CCCCCccEEEehhh
Q 016157 122 SGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLP--YRSDFGDAAISIAV 188 (394)
Q Consensus 122 ~g~~VLDvGCG~G~~l~----~~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~lp--~~~~~fD~Vi~~~v 188 (394)
.+..+||||||.|.++. ..|...++|+|+....+..+.++ |+.++..|+..+. ++++++|.|+.++-
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~FP 426 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYILFP 426 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEECC
Confidence 35689999999999753 48999999999999877665544 5667777765332 66788999998776
Q ss_pred hhhcCChh--H---HHHHHHHHHhccccCcEEEEEE
Q 016157 189 LHHLSTES--R---RKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 189 l~hl~~~~--~---~~~~L~ei~r~LkpGG~lli~~ 219 (394)
--|..... | -..+|+.++++|||||.+.+.+
T Consensus 427 DPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~T 462 (506)
T PRK01544 427 DPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFAS 462 (506)
T ss_pred CCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEc
Confidence 54433211 1 2678999999999999999886
|
|
| >TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA | Back alignment and domain information |
|---|
Probab=98.08 E-value=7.4e-06 Score=83.92 Aligned_cols=93 Identities=18% Similarity=0.318 Sum_probs=66.4
Q ss_pred CCCCCEEEEEcCccCccccc--CCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeecCCC----CCCCCCccEEEeh
Q 016157 120 LPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNL----PYRSDFGDAAISI 186 (394)
Q Consensus 120 l~~g~~VLDvGCG~G~~l~~--~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~l----p~~~~~fD~Vi~~ 186 (394)
+.++.+|||+|||+|.++.. .....|+|+|+++.+++.|+++ +++++.+|+.+. ++.+++||+|++.
T Consensus 290 ~~~~~~vLDl~cG~G~~sl~la~~~~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi~d 369 (431)
T TIGR00479 290 LQGEELVVDAYCGVGTFTLPLAKQAKSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLLLD 369 (431)
T ss_pred cCCCCEEEEcCCCcCHHHHHHHHhCCEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEEEC
Confidence 45678999999999997532 2235899999999999999875 578999998652 2335679999974
Q ss_pred hhhhhcCChhHHHHHHHHHHhccccCcEEEEE
Q 016157 187 AVLHHLSTESRRKKAIEELVRVVKKGSLVLIT 218 (394)
Q Consensus 187 ~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~ 218 (394)
-.=..+ ...+++.+.+ ++|++.++++
T Consensus 370 PPr~G~-----~~~~l~~l~~-l~~~~ivyvs 395 (431)
T TIGR00479 370 PPRKGC-----AAEVLRTIIE-LKPERIVYVS 395 (431)
T ss_pred cCCCCC-----CHHHHHHHHh-cCCCEEEEEc
Confidence 321111 2455665554 8898877765
|
This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. |
| >PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase [] | Back alignment and domain information |
|---|
Probab=98.08 E-value=6.3e-06 Score=84.59 Aligned_cols=92 Identities=15% Similarity=0.208 Sum_probs=64.9
Q ss_pred CCEEEEEcCccCcccc----c----CCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeecCCCCCCCCCccEEEeh
Q 016157 123 GSLVLDAGCGNGKYLG----L----NPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISI 186 (394)
Q Consensus 123 g~~VLDvGCG~G~~l~----~----~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~lp~~~~~fD~Vi~~ 186 (394)
+..|||||||+|.+.. + ....+|++++-|+.++...+++ .++++.+|++++..+ ..+|+||+=
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lp-ekvDIIVSE 265 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVELP-EKVDIIVSE 265 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCHS-S-EEEEEE-
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCC-CceeEEEEe
Confidence 5689999999999742 1 2346999999999877655332 589999999998764 489999984
Q ss_pred hhhhhcCChhHHHHHHHHHHhccccCcEEE
Q 016157 187 AVLHHLSTESRRKKAIEELVRVVKKGSLVL 216 (394)
Q Consensus 187 ~vl~hl~~~~~~~~~L~ei~r~LkpGG~ll 216 (394)
..= .+.+.|...+.|....|.|||||.++
T Consensus 266 lLG-sfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 266 LLG-SFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp --B-TTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred ccC-CccccccCHHHHHHHHhhcCCCCEEe
Confidence 432 23333446778999999999999876
|
These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B .... |
| >PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase | Back alignment and domain information |
|---|
Probab=98.06 E-value=1.2e-05 Score=72.59 Aligned_cols=101 Identities=28% Similarity=0.410 Sum_probs=67.3
Q ss_pred HcCCCCCCEEEEEcCccCcccc----cCCCc---------EEEEEeCCHHHHHHHHHc--------CCeEEEeecCCCCC
Q 016157 117 LNSLPSGSLVLDAGCGNGKYLG----LNPDC---------FFVGCDISPSLIKICVDR--------GHEVLVADAVNLPY 175 (394)
Q Consensus 117 l~~l~~g~~VLDvGCG~G~~l~----~~~~~---------~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~lp~ 175 (394)
+....++..|||--||+|.++- ..... .++|+|+++.+++.|+++ .+.+.+.|+.++++
T Consensus 23 la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~~l~~ 102 (179)
T PF01170_consen 23 LAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDARELPL 102 (179)
T ss_dssp HTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--GGGGGG
T ss_pred HhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecchhhccc
Confidence 3456788999999999999752 12222 399999999999999887 25789999999997
Q ss_pred CCCCccEEEehhhhhh-cCC----hhHHHHHHHHHHhccccCcEEEEE
Q 016157 176 RSDFGDAAISIAVLHH-LST----ESRRKKAIEELVRVVKKGSLVLIT 218 (394)
Q Consensus 176 ~~~~fD~Vi~~~vl~h-l~~----~~~~~~~L~ei~r~LkpGG~lli~ 218 (394)
.++++|+|+++--.-. +.. ..--..+++++.++|++ ..++++
T Consensus 103 ~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~-~~v~l~ 149 (179)
T PF01170_consen 103 PDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKP-RAVFLT 149 (179)
T ss_dssp TTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTT-CEEEEE
T ss_pred ccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCC-CEEEEE
Confidence 7889999999643221 111 11135678999999999 444443
|
It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A. |
| >PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases | Back alignment and domain information |
|---|
Probab=98.05 E-value=9.8e-06 Score=72.74 Aligned_cols=98 Identities=21% Similarity=0.158 Sum_probs=61.2
Q ss_pred CCCCCEEEEEcCccCccc---c-cCCCcEEEEEeCCHHHHHHHHHc----------CCeEEEeecCC-C--C-CCCCCcc
Q 016157 120 LPSGSLVLDAGCGNGKYL---G-LNPDCFFVGCDISPSLIKICVDR----------GHEVLVADAVN-L--P-YRSDFGD 181 (394)
Q Consensus 120 l~~g~~VLDvGCG~G~~l---~-~~~~~~v~gvD~S~~~l~~a~~~----------~i~~~~~D~~~-l--p-~~~~~fD 181 (394)
...+.+|||+|||+|... . ......|+.+|..+ .++.++.+ .+.+...|-.+ . . .....||
T Consensus 43 ~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D 121 (173)
T PF10294_consen 43 LFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFD 121 (173)
T ss_dssp GTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBS
T ss_pred hcCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCcccccccccccCC
Confidence 456789999999999741 2 23567999999998 77766654 23444444322 1 1 2346899
Q ss_pred EEEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 016157 182 AAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 221 (394)
Q Consensus 182 ~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~ 221 (394)
+|++..+++.-.. ...+++-+.++|+|+|.+++....
T Consensus 122 ~IlasDv~Y~~~~---~~~L~~tl~~ll~~~~~vl~~~~~ 158 (173)
T PF10294_consen 122 VILASDVLYDEEL---FEPLVRTLKRLLKPNGKVLLAYKR 158 (173)
T ss_dssp EEEEES--S-GGG---HHHHHHHHHHHBTT-TTEEEEEE-
T ss_pred EEEEecccchHHH---HHHHHHHHHHHhCCCCEEEEEeCE
Confidence 9999999986443 788999999999999997777643
|
They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A. |
| >TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB | Back alignment and domain information |
|---|
Probab=98.03 E-value=1.1e-05 Score=81.09 Aligned_cols=92 Identities=13% Similarity=0.151 Sum_probs=66.3
Q ss_pred CCCEEEEEcCccCcccc--cCCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeecCCCCC-CCCCccEEEehhhhhh
Q 016157 122 SGSLVLDAGCGNGKYLG--LNPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPY-RSDFGDAAISIAVLHH 191 (394)
Q Consensus 122 ~g~~VLDvGCG~G~~l~--~~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~lp~-~~~~fD~Vi~~~vl~h 191 (394)
++.+|||+|||+|.+.. ..++..|+|+|+++.+++.|+++ +++++.+|+.+... ....||+|++.---..
T Consensus 233 ~~~~vLDL~cG~G~~~l~la~~~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~DPPr~G 312 (374)
T TIGR02085 233 PVTQMWDLFCGVGGFGLHCAGPDTQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVNPPRRG 312 (374)
T ss_pred CCCEEEEccCCccHHHHHHhhcCCeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEECCCCCC
Confidence 45799999999998732 24557899999999999999876 46899999876431 1246999988643221
Q ss_pred cCChhHHHHHHHHHHhccccCcEEEEEE
Q 016157 192 LSTESRRKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 192 l~~~~~~~~~L~ei~r~LkpGG~lli~~ 219 (394)
+ ...+++.+. .++|++.++++.
T Consensus 313 ~-----~~~~l~~l~-~~~p~~ivyvsc 334 (374)
T TIGR02085 313 I-----GKELCDYLS-QMAPKFILYSSC 334 (374)
T ss_pred C-----cHHHHHHHH-hcCCCeEEEEEe
Confidence 1 234555554 479999888875
|
This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA. |
| >PLN02823 spermine synthase | Back alignment and domain information |
|---|
Probab=98.02 E-value=1.9e-05 Score=78.18 Aligned_cols=94 Identities=21% Similarity=0.234 Sum_probs=70.1
Q ss_pred CCCEEEEEcCccCcccc----cCCCcEEEEEeCCHHHHHHHHHc-----------CCeEEEeecCCC-CCCCCCccEEEe
Q 016157 122 SGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR-----------GHEVLVADAVNL-PYRSDFGDAAIS 185 (394)
Q Consensus 122 ~g~~VLDvGCG~G~~l~----~~~~~~v~gvD~S~~~l~~a~~~-----------~i~~~~~D~~~l-p~~~~~fD~Vi~ 185 (394)
...+||.||+|.|..++ ..+..+++.+|+++.+++.|++. +++++.+|+... ....++||+|++
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi~ 182 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVIIG 182 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEEe
Confidence 34689999999998654 23445899999999999999975 367888888763 334578999998
Q ss_pred hhh-------hhhcCChhHHHHHHH-HHHhccccCcEEEEEE
Q 016157 186 IAV-------LHHLSTESRRKKAIE-ELVRVVKKGSLVLITV 219 (394)
Q Consensus 186 ~~v-------l~hl~~~~~~~~~L~-ei~r~LkpGG~lli~~ 219 (394)
-.. ..++-+ .++++ .+.+.|+|||.+++..
T Consensus 183 D~~dp~~~~~~~~Lyt----~eF~~~~~~~~L~p~Gvlv~q~ 220 (336)
T PLN02823 183 DLADPVEGGPCYQLYT----KSFYERIVKPKLNPGGIFVTQA 220 (336)
T ss_pred cCCCccccCcchhhcc----HHHHHHHHHHhcCCCcEEEEec
Confidence 632 122222 46787 8999999999987753
|
|
| >KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.02 E-value=5.6e-06 Score=71.09 Aligned_cols=68 Identities=25% Similarity=0.400 Sum_probs=57.4
Q ss_pred CCCEEEEEcCccCcccc--cCC-CcEEEEEeCCHHHHHHHHHc------CCeEEEeecCCCCCCCCCccEEEehhhh
Q 016157 122 SGSLVLDAGCGNGKYLG--LNP-DCFFVGCDISPSLIKICVDR------GHEVLVADAVNLPYRSDFGDAAISIAVL 189 (394)
Q Consensus 122 ~g~~VLDvGCG~G~~l~--~~~-~~~v~gvD~S~~~l~~a~~~------~i~~~~~D~~~lp~~~~~fD~Vi~~~vl 189 (394)
.|..++|+|||.|.+.- ..+ ...|+|+|+.+.+++++.++ +++++++|+.++.+..+.||.++.+.-+
T Consensus 48 Egkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEvqidlLqcdildle~~~g~fDtaviNppF 124 (185)
T KOG3420|consen 48 EGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEVQIDLLQCDILDLELKGGIFDTAVINPPF 124 (185)
T ss_pred cCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhhhhheeeeeccchhccCCeEeeEEecCCC
Confidence 57899999999999752 233 34799999999999999987 6789999999998888999999997654
|
|
| >PLN02589 caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=97.98 E-value=1.7e-05 Score=75.29 Aligned_cols=101 Identities=16% Similarity=0.082 Sum_probs=74.9
Q ss_pred HHHHHcCCCCCCEEEEEcCccCccc----c-cCCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeecCCC-C-C--
Q 016157 113 VATFLNSLPSGSLVLDAGCGNGKYL----G-LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNL-P-Y-- 175 (394)
Q Consensus 113 l~~~l~~l~~g~~VLDvGCG~G~~l----~-~~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~l-p-~-- 175 (394)
+..++.......+|||||+++|.-+ . ..++.+++.+|+++...+.|++. .++++.+|+.+. + +
T Consensus 70 lL~~l~~~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~ 149 (247)
T PLN02589 70 FLNMLLKLINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIE 149 (247)
T ss_pred HHHHHHHHhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHh
Confidence 3444444444569999999999842 2 24577999999999999999876 478999998763 2 1
Q ss_pred ---CCCCccEEEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 016157 176 ---RSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 176 ---~~~~fD~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~ 219 (394)
..++||+|+.-+- ...-...+..+.++|+|||.+++..
T Consensus 150 ~~~~~~~fD~iFiDad------K~~Y~~y~~~~l~ll~~GGviv~DN 190 (247)
T PLN02589 150 DGKYHGTFDFIFVDAD------KDNYINYHKRLIDLVKVGGVIGYDN 190 (247)
T ss_pred ccccCCcccEEEecCC------HHHhHHHHHHHHHhcCCCeEEEEcC
Confidence 1368999998654 2225678888899999999988864
|
|
| >PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G | Back alignment and domain information |
|---|
Probab=97.97 E-value=4.2e-05 Score=69.38 Aligned_cols=92 Identities=24% Similarity=0.179 Sum_probs=69.2
Q ss_pred CCCCC-EEEEEcCccCcc----cccCCCcEEEEEeCCHHHHHHHH---Hc----CCeEEEeecCCCCCCCCCccEEEehh
Q 016157 120 LPSGS-LVLDAGCGNGKY----LGLNPDCFFVGCDISPSLIKICV---DR----GHEVLVADAVNLPYRSDFGDAAISIA 187 (394)
Q Consensus 120 l~~g~-~VLDvGCG~G~~----l~~~~~~~v~gvD~S~~~l~~a~---~~----~i~~~~~D~~~lp~~~~~fD~Vi~~~ 187 (394)
++... +++|||+|.|.- +-..|..+++.+|....-+...+ .. |++++.+.+++ +.....||+|++-+
T Consensus 45 ~~~~~~~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~-~~~~~~fd~v~aRA 123 (184)
T PF02527_consen 45 LPDFGKKVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEE-PEYRESFDVVTARA 123 (184)
T ss_dssp S-CCCSEEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHH-TTTTT-EEEEEEES
T ss_pred hccCCceEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecc-cccCCCccEEEeeh
Confidence 44444 899999999973 23478899999999987544433 33 68899999998 44578999999988
Q ss_pred hhhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 016157 188 VLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 188 vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~ 219 (394)
+- + ...++.-+...|++||++++.-
T Consensus 124 v~----~---l~~l~~~~~~~l~~~G~~l~~K 148 (184)
T PF02527_consen 124 VA----P---LDKLLELARPLLKPGGRLLAYK 148 (184)
T ss_dssp SS----S---HHHHHHHHGGGEEEEEEEEEEE
T ss_pred hc----C---HHHHHHHHHHhcCCCCEEEEEc
Confidence 63 3 6788999999999999998874
|
Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A. |
| >KOG2904 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.95 E-value=4.8e-05 Score=71.94 Aligned_cols=101 Identities=20% Similarity=0.209 Sum_probs=70.6
Q ss_pred CCCEEEEEcCccCccc----ccCCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeecCC-----CCCCCCCccEEE
Q 016157 122 SGSLVLDAGCGNGKYL----GLNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVN-----LPYRSDFGDAAI 184 (394)
Q Consensus 122 ~g~~VLDvGCG~G~~l----~~~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~-----lp~~~~~fD~Vi 184 (394)
.+..|||+|||+|..+ ...+.+.++++|.|+.++..|.++ ++.++..+++. .+...+.+|+++
T Consensus 148 ~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dllv 227 (328)
T KOG2904|consen 148 KHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDLLV 227 (328)
T ss_pred ccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccccccccCceeEEe
Confidence 3458999999999863 346788999999999999999887 35555443332 335568999999
Q ss_pred ehhhh------hhcCChh-----------------HHHHHHHHHHhccccCcEEEEEEcCc
Q 016157 185 SIAVL------HHLSTES-----------------RRKKAIEELVRVVKKGSLVLITVWAV 222 (394)
Q Consensus 185 ~~~vl------~hl~~~~-----------------~~~~~L~ei~r~LkpGG~lli~~~~~ 222 (394)
++--. ..+..+. -...++.-+.|.|+|||.+.+..-..
T Consensus 228 sNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~~~ 288 (328)
T KOG2904|consen 228 SNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELVER 288 (328)
T ss_pred cCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEeccc
Confidence 96421 1111000 13556777889999999999987533
|
|
| >COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.94 E-value=4.4e-05 Score=69.91 Aligned_cols=133 Identities=20% Similarity=0.156 Sum_probs=86.2
Q ss_pred HHHHHHHHHhhccccccccccchHHHHHHHc---CCCCCCEEEEEcCccCccccc-----CCCcEEEEEeCCHHHHHHHH
Q 016157 88 KKYVHRVYDAIAPHFSSTRFAKWPKVATFLN---SLPSGSLVLDAGCGNGKYLGL-----NPDCFFVGCDISPSLIKICV 159 (394)
Q Consensus 88 ~~~v~~~Yd~~a~~y~~~~~~~~~~l~~~l~---~l~~g~~VLDvGCG~G~~l~~-----~~~~~v~gvD~S~~~l~~a~ 159 (394)
.++..+.|...|.. ..-|-+.+.++.++.. -+.++..|+|+|+.+|.+++. .++..|+|+|+-+--.
T Consensus 9 ~~~~~D~Y~~~Ak~-~gyRSRAa~KL~el~~k~~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~---- 83 (205)
T COG0293 9 AEHLRDPYYKKAKK-EGYRSRAAYKLLELNEKFKLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKP---- 83 (205)
T ss_pred HHhhcCHHHHHHhh-ccccchHHHHHHHHHHhcCeecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccccc----
Confidence 34444555554432 1122333444444443 467899999999999998653 4556799999965321
Q ss_pred HcCCeEEEeecCCCC--------CCCCCccEEEehh--------hhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCcc
Q 016157 160 DRGHEVLVADAVNLP--------YRSDFGDAAISIA--------VLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVE 223 (394)
Q Consensus 160 ~~~i~~~~~D~~~lp--------~~~~~fD~Vi~~~--------vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~~ 223 (394)
-.++.++++|+..-+ +....+|+|++-. ..+|......-..++.-+..+|+|||.+++-+|..+
T Consensus 84 ~~~V~~iq~d~~~~~~~~~l~~~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~ 163 (205)
T COG0293 84 IPGVIFLQGDITDEDTLEKLLEALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQGE 163 (205)
T ss_pred CCCceEEeeeccCccHHHHHHHHcCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeCC
Confidence 126999999998743 3345579999733 234443333345667777889999999999998765
Q ss_pred ch
Q 016157 224 QE 225 (394)
Q Consensus 224 ~~ 225 (394)
..
T Consensus 164 ~~ 165 (205)
T COG0293 164 DF 165 (205)
T ss_pred CH
Confidence 43
|
|
| >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.94 E-value=2.2e-05 Score=79.78 Aligned_cols=116 Identities=17% Similarity=0.225 Sum_probs=90.3
Q ss_pred cccchHHHHHHH-cCCCCCC-EEEEEcCccCccccc---CCCcEEEEEeCCHHHHHHHHHcC------CeEEEeecCCCC
Q 016157 106 RFAKWPKVATFL-NSLPSGS-LVLDAGCGNGKYLGL---NPDCFFVGCDISPSLIKICVDRG------HEVLVADAVNLP 174 (394)
Q Consensus 106 ~~~~~~~l~~~l-~~l~~g~-~VLDvGCG~G~~l~~---~~~~~v~gvD~S~~~l~~a~~~~------i~~~~~D~~~lp 174 (394)
++..|..+...+ ..+.+-. ++|-+|||+-.+... .....|+-+|+|+-.++.+..++ ..+...|+..+.
T Consensus 30 wY~~~l~l~~~i~~~~~p~~~~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~~~~~~~~~~~d~~~l~ 109 (482)
T KOG2352|consen 30 WYGALLSLSGSIMKYLSPSDFKILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAKERPEMQMVEMDMDQLV 109 (482)
T ss_pred HHHHHHHHHHHHHHhhchhhceeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccccCCcceEEEEecchhcc
Confidence 444554444433 3345555 999999999987542 33348999999999998887763 678999999999
Q ss_pred CCCCCccEEEehhhhhhcCChh-------HHHHHHHHHHhccccCcEEEEEEcC
Q 016157 175 YRSDFGDAAISIAVLHHLSTES-------RRKKAIEELVRVVKKGSLVLITVWA 221 (394)
Q Consensus 175 ~~~~~fD~Vi~~~vl~hl~~~~-------~~~~~L~ei~r~LkpGG~lli~~~~ 221 (394)
|++++||+|+..+.++++-..+ ++...+.+++|+|+|||+++..+..
T Consensus 110 fedESFdiVIdkGtlDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl~ 163 (482)
T KOG2352|consen 110 FEDESFDIVIDKGTLDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTLV 163 (482)
T ss_pred CCCcceeEEEecCccccccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEee
Confidence 9999999999999999976543 2456789999999999998888763
|
|
| >TIGR00755 ksgA dimethyladenosine transferase | Back alignment and domain information |
|---|
Probab=97.93 E-value=2.3e-05 Score=74.52 Aligned_cols=91 Identities=21% Similarity=0.191 Sum_probs=62.4
Q ss_pred CCCCCEEEEEcCccCccccc--CCCcEEEEEeCCHHHHHHHHHc-----CCeEEEeecCCCCCCCCCcc---EEEehhhh
Q 016157 120 LPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR-----GHEVLVADAVNLPYRSDFGD---AAISIAVL 189 (394)
Q Consensus 120 l~~g~~VLDvGCG~G~~l~~--~~~~~v~gvD~S~~~l~~a~~~-----~i~~~~~D~~~lp~~~~~fD---~Vi~~~vl 189 (394)
+.++.+|||||||+|.++.. .....++++|+++.+++.++++ +++++.+|+..+++. .|| +|+++-..
T Consensus 27 ~~~~~~VLEiG~G~G~lt~~L~~~~~~v~~iE~d~~~~~~l~~~~~~~~~v~v~~~D~~~~~~~--~~d~~~~vvsNlPy 104 (253)
T TIGR00755 27 VLEGDVVLEIGPGLGALTEPLLKRAKKVTAIEIDPRLAEILRKLLSLYERLEVIEGDALKVDLP--DFPKQLKVVSNLPY 104 (253)
T ss_pred CCCcCEEEEeCCCCCHHHHHHHHhCCcEEEEECCHHHHHHHHHHhCcCCcEEEEECchhcCChh--HcCCcceEEEcCCh
Confidence 45678999999999998642 2234699999999999999875 578999999998864 466 66665432
Q ss_pred hhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 016157 190 HHLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (394)
Q Consensus 190 ~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~ 220 (394)
|+. ...+..+.. .+|+..++...
T Consensus 105 -~i~-----~~il~~ll~--~~~~~~~~~~~ 127 (253)
T TIGR00755 105 -NIS-----SPLIFKLLE--KPKFRLAVLMV 127 (253)
T ss_pred -hhH-----HHHHHHHhc--cCCCceEEEEe
Confidence 232 334444443 55555444443
|
Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase |
| >PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=97.93 E-value=3e-05 Score=74.19 Aligned_cols=124 Identities=14% Similarity=0.074 Sum_probs=86.1
Q ss_pred HHHHHHHhhccccccccccchHHHHHHHcCCCC-------CCEEEEEcCccCcccc--cCCCcEEEEEeCCHHHHHHHHH
Q 016157 90 YVHRVYDAIAPHFSSTRFAKWPKVATFLNSLPS-------GSLVLDAGCGNGKYLG--LNPDCFFVGCDISPSLIKICVD 160 (394)
Q Consensus 90 ~v~~~Yd~~a~~y~~~~~~~~~~l~~~l~~l~~-------g~~VLDvGCG~G~~l~--~~~~~~v~gvD~S~~~l~~a~~ 160 (394)
-+.+++..++......|...+..+...|..+-| ..+||--|||-|+++- +..|..+.|.|.|--|+-...-
T Consensus 17 ~L~q~~RDWS~eg~~ER~~~~~~I~~~L~~~~p~~~~~~~~~~VLVPGsGLGRLa~Eia~~G~~~~gnE~S~~Mll~s~f 96 (270)
T PF07942_consen 17 TLKQFVRDWSSEGEEERDPCYSPILDELESLFPPAGSDRSKIRVLVPGSGLGRLAWEIAKLGYAVQGNEFSYFMLLASNF 96 (270)
T ss_pred HHHHHHhhCchhhHHHHHHHHHHHHHHHHHhhcccccCCCccEEEEcCCCcchHHHHHhhccceEEEEEchHHHHHHHHH
Confidence 344455555555555666666666665554322 4699999999999853 3458899999999988643221
Q ss_pred -------c----------------------------------------CCeEEEeecCCCCCCC---CCccEEEehhhhh
Q 016157 161 -------R----------------------------------------GHEVLVADAVNLPYRS---DFGDAAISIAVLH 190 (394)
Q Consensus 161 -------~----------------------------------------~i~~~~~D~~~lp~~~---~~fD~Vi~~~vl~ 190 (394)
. ++....+|+.++-..+ ++||+|+..+.|.
T Consensus 97 iLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPDv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFID 176 (270)
T PF07942_consen 97 ILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPDVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFID 176 (270)
T ss_pred HHcccCCCCcEEEecceecccCCCCHHHhCCceEeCCcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEee
Confidence 0 2345666776654444 7999999997776
Q ss_pred hcCChhHHHHHHHHHHhccccCcEEE
Q 016157 191 HLSTESRRKKAIEELVRVVKKGSLVL 216 (394)
Q Consensus 191 hl~~~~~~~~~L~ei~r~LkpGG~ll 216 (394)
-..+ ....|+.|.++|||||..+
T Consensus 177 TA~N---i~~Yi~tI~~lLkpgG~WI 199 (270)
T PF07942_consen 177 TAEN---IIEYIETIEHLLKPGGYWI 199 (270)
T ss_pred chHH---HHHHHHHHHHHhccCCEEE
Confidence 5555 8999999999999999544
|
This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions []. |
| >PTZ00338 dimethyladenosine transferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=97.89 E-value=2e-05 Score=76.67 Aligned_cols=68 Identities=19% Similarity=0.303 Sum_probs=54.4
Q ss_pred CCCCCCEEEEEcCccCccccc--CCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeecCCCCCCCCCccEEEehhh
Q 016157 119 SLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISIAV 188 (394)
Q Consensus 119 ~l~~g~~VLDvGCG~G~~l~~--~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~lp~~~~~fD~Vi~~~v 188 (394)
.+.++.+|||||||+|.++.. ..+..++|+|+++.|++.++++ +++++.+|+...++ ..||.|+++--
T Consensus 33 ~~~~~~~VLEIG~G~G~LT~~Ll~~~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~--~~~d~VvaNlP 110 (294)
T PTZ00338 33 AIKPTDTVLEIGPGTGNLTEKLLQLAKKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEF--PYFDVCVANVP 110 (294)
T ss_pred CCCCcCEEEEecCchHHHHHHHHHhCCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhcc--cccCEEEecCC
Confidence 456788999999999998542 3345899999999999998864 47899999988765 36898887644
|
|
| >PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed | Back alignment and domain information |
|---|
Probab=97.88 E-value=6.8e-05 Score=77.44 Aligned_cols=110 Identities=16% Similarity=0.173 Sum_probs=77.6
Q ss_pred CCCCCCEEEEEcCccCccc----cc-CCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeecCCCC-CCCCCccEEEe
Q 016157 119 SLPSGSLVLDAGCGNGKYL----GL-NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLP-YRSDFGDAAIS 185 (394)
Q Consensus 119 ~l~~g~~VLDvGCG~G~~l----~~-~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~lp-~~~~~fD~Vi~ 185 (394)
...+|.+|||+++|+|.=+ .. .....+++.|+++.-++..+++ ++.+...|...++ ...+.||.|+.
T Consensus 110 ~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILv 189 (470)
T PRK11933 110 DDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETFDAILL 189 (470)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEE
Confidence 5578999999999999732 22 3445899999999988887765 3466777877653 23467999994
Q ss_pred ----hh--hhhhcCCh-------------hHHHHHHHHHHhccccCcEEEEEEcCccchhhh
Q 016157 186 ----IA--VLHHLSTE-------------SRRKKAIEELVRVVKKGSLVLITVWAVEQEDKS 228 (394)
Q Consensus 186 ----~~--vl~hl~~~-------------~~~~~~L~ei~r~LkpGG~lli~~~~~~~~~~~ 228 (394)
++ ++..-++. ....++|..+.+.|||||+++-++.+...+++.
T Consensus 190 DaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~~~eENE 251 (470)
T PRK11933 190 DAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTLNREENQ 251 (470)
T ss_pred cCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCHHHHH
Confidence 32 22221110 113788999999999999999998877655443
|
|
| >COG1092 Predicted SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.80 E-value=4.4e-05 Score=76.78 Aligned_cols=110 Identities=17% Similarity=0.177 Sum_probs=80.4
Q ss_pred HHHHHcCCCCCCEEEEEcCccCcccc--cCCCc-EEEEEeCCHHHHHHHHHc----C-----CeEEEeecCCCC----CC
Q 016157 113 VATFLNSLPSGSLVLDAGCGNGKYLG--LNPDC-FFVGCDISPSLIKICVDR----G-----HEVLVADAVNLP----YR 176 (394)
Q Consensus 113 l~~~l~~l~~g~~VLDvGCG~G~~l~--~~~~~-~v~gvD~S~~~l~~a~~~----~-----i~~~~~D~~~lp----~~ 176 (394)
....+...-.|.+|||+=|=||.+.- +..|+ +|++||+|...++.|+++ + +.++++|+..+- -.
T Consensus 208 ~R~~l~~~~~GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~ 287 (393)
T COG1092 208 NRRALGELAAGKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERR 287 (393)
T ss_pred HHHHHhhhccCCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhc
Confidence 34445554459999999999999853 35666 999999999999999987 2 579999987642 23
Q ss_pred CCCccEEEehh-hhhh-----cCChhHHHHHHHHHHhccccCcEEEEEEcCc
Q 016157 177 SDFGDAAISIA-VLHH-----LSTESRRKKAIEELVRVVKKGSLVLITVWAV 222 (394)
Q Consensus 177 ~~~fD~Vi~~~-vl~h-----l~~~~~~~~~L~ei~r~LkpGG~lli~~~~~ 222 (394)
..+||+|++-- .+-- +.-......++..+.++|+|||.+++++-..
T Consensus 288 g~~fDlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~ 339 (393)
T COG1092 288 GEKFDLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSR 339 (393)
T ss_pred CCcccEEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCC
Confidence 45999999821 0000 1111125778899999999999999997543
|
|
| >KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.77 E-value=6.4e-05 Score=73.62 Aligned_cols=91 Identities=20% Similarity=0.291 Sum_probs=72.7
Q ss_pred CEEEEEcCccCccccc----CCCcEEEEEeCCHHHHHHHHHc---CCeEEEeecCCCCCCCCCccEEEehhhhhhcCChh
Q 016157 124 SLVLDAGCGNGKYLGL----NPDCFFVGCDISPSLIKICVDR---GHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTES 196 (394)
Q Consensus 124 ~~VLDvGCG~G~~l~~----~~~~~v~gvD~S~~~l~~a~~~---~i~~~~~D~~~lp~~~~~fD~Vi~~~vl~hl~~~~ 196 (394)
...+|+|.|.|..++. .| .+-|+++....+-.++.. +++.+.+|+..- .|. -|+|++-+++||+.+.+
T Consensus 179 ~~avDvGgGiG~v~k~ll~~fp--~ik~infdlp~v~~~a~~~~~gV~~v~gdmfq~-~P~--~daI~mkWiLhdwtDed 253 (342)
T KOG3178|consen 179 NVAVDVGGGIGRVLKNLLSKYP--HIKGINFDLPFVLAAAPYLAPGVEHVAGDMFQD-TPK--GDAIWMKWILHDWTDED 253 (342)
T ss_pred ceEEEcCCcHhHHHHHHHHhCC--CCceeecCHHHHHhhhhhhcCCcceeccccccc-CCC--cCeEEEEeecccCChHH
Confidence 6899999999997642 34 366777777766555444 588888888764 333 36999999999999866
Q ss_pred HHHHHHHHHHhccccCcEEEEEEc
Q 016157 197 RRKKAIEELVRVVKKGSLVLITVW 220 (394)
Q Consensus 197 ~~~~~L~ei~r~LkpGG~lli~~~ 220 (394)
..++|+++...|+|||.+++...
T Consensus 254 -cvkiLknC~~sL~~~GkIiv~E~ 276 (342)
T KOG3178|consen 254 -CVKILKNCKKSLPPGGKIIVVEN 276 (342)
T ss_pred -HHHHHHHHHHhCCCCCEEEEEec
Confidence 89999999999999999999875
|
|
| >PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes | Back alignment and domain information |
|---|
Probab=97.77 E-value=1.5e-05 Score=71.71 Aligned_cols=99 Identities=18% Similarity=0.165 Sum_probs=61.0
Q ss_pred CCCEEEEEcCccCccccc----C-CCcEEEEEeCCHHHHHHHHHcCCeEEEeecCCC------C--CC--CCCccEEEeh
Q 016157 122 SGSLVLDAGCGNGKYLGL----N-PDCFFVGCDISPSLIKICVDRGHEVLVADAVNL------P--YR--SDFGDAAISI 186 (394)
Q Consensus 122 ~g~~VLDvGCG~G~~l~~----~-~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~l------p--~~--~~~fD~Vi~~ 186 (394)
.+.++||+||++|.++.. . +...|+|+|+.+..- -.++.++++|+.+. . +. ...||+|+|-
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~~----~~~~~~i~~d~~~~~~~~~i~~~~~~~~~~~dlv~~D 98 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMDP----LQNVSFIQGDITNPENIKDIRKLLPESGEKFDLVLSD 98 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTGS-----TTEEBTTGGGEEEEHSHHGGGSHGTTTCSESEEEE-
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEecccccc----ccceeeeecccchhhHHHhhhhhccccccCcceeccc
Confidence 348999999999998642 2 457999999987610 03455556665431 1 11 2689999997
Q ss_pred hhhhhc--------CChhHHHHHHHHHHhccccCcEEEEEEcCccc
Q 016157 187 AVLHHL--------STESRRKKAIEELVRVVKKGSLVLITVWAVEQ 224 (394)
Q Consensus 187 ~vl~hl--------~~~~~~~~~L~ei~r~LkpGG~lli~~~~~~~ 224 (394)
.....- .........|.-+...|+|||.+++-++....
T Consensus 99 ~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~~~ 144 (181)
T PF01728_consen 99 MAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKGPE 144 (181)
T ss_dssp ------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSSTT
T ss_pred cccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccCcc
Confidence 722211 11112455666677889999999999887433
|
RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A .... |
| >PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2 | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.0001 Score=72.09 Aligned_cols=103 Identities=18% Similarity=0.240 Sum_probs=69.3
Q ss_pred CCCCCCEEEEEcCccCccccc-----------CCCcEEEEEeCCHHHHHHHHHc---------CCeEEEeecCCCCCC--
Q 016157 119 SLPSGSLVLDAGCGNGKYLGL-----------NPDCFFVGCDISPSLIKICVDR---------GHEVLVADAVNLPYR-- 176 (394)
Q Consensus 119 ~l~~g~~VLDvGCG~G~~l~~-----------~~~~~v~gvD~S~~~l~~a~~~---------~i~~~~~D~~~lp~~-- 176 (394)
...++.+|||.+||+|.++.. .....++|+|+++.++..|+-+ ...+..+|....+..
T Consensus 43 ~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~~~~~ 122 (311)
T PF02384_consen 43 NPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLENDKFIK 122 (311)
T ss_dssp TT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSHSCTS
T ss_pred hccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcccccccccccccccccccccc
Confidence 456677899999999998632 2567999999999999888754 235788888765543
Q ss_pred CCCccEEEehhhhhhc--CC----------------hhHHHHHHHHHHhccccCcEEEEEEcC
Q 016157 177 SDFGDAAISIAVLHHL--ST----------------ESRRKKAIEELVRVVKKGSLVLITVWA 221 (394)
Q Consensus 177 ~~~fD~Vi~~~vl~hl--~~----------------~~~~~~~L~ei~r~LkpGG~lli~~~~ 221 (394)
...||+|+++--+--. .. ...-..++..+.+.||+||++.+.++.
T Consensus 123 ~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp~ 185 (311)
T PF02384_consen 123 NQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILPN 185 (311)
T ss_dssp T--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEEH
T ss_pred ccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEecc
Confidence 4789999996433222 00 011235889999999999999888753
|
1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B. |
| >PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ] | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00022 Score=65.92 Aligned_cols=97 Identities=20% Similarity=0.295 Sum_probs=71.8
Q ss_pred CCCCCCEEEEEcCccCccccc-----CCCcEEEEEeCCH----HHHHHHHHc-CCeEEEeecCCCC---CCCCCccEEEe
Q 016157 119 SLPSGSLVLDAGCGNGKYLGL-----NPDCFFVGCDISP----SLIKICVDR-GHEVLVADAVNLP---YRSDFGDAAIS 185 (394)
Q Consensus 119 ~l~~g~~VLDvGCG~G~~l~~-----~~~~~v~gvD~S~----~~l~~a~~~-~i~~~~~D~~~lp---~~~~~fD~Vi~ 185 (394)
.+.+|++||-+|.++|..... .+...|+|+++|+ .++..|++| |+--+..|+.... .--+..|+|++
T Consensus 70 ~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~NIiPIl~DAr~P~~Y~~lv~~VDvI~~ 149 (229)
T PF01269_consen 70 PIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRPNIIPILEDARHPEKYRMLVEMVDVIFQ 149 (229)
T ss_dssp S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHSTTEEEEES-TTSGGGGTTTS--EEEEEE
T ss_pred CCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCCceeeeeccCCChHHhhcccccccEEEe
Confidence 467899999999999997543 6688999999999 567888888 7777889987632 11358899987
Q ss_pred hhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 016157 186 IAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (394)
Q Consensus 186 ~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~ 220 (394)
-- ..+.+..-++.++...||+||.+++..-
T Consensus 150 DV-----aQp~Qa~I~~~Na~~fLk~gG~~~i~iK 179 (229)
T PF01269_consen 150 DV-----AQPDQARIAALNARHFLKPGGHLIISIK 179 (229)
T ss_dssp E------SSTTHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cC-----CChHHHHHHHHHHHhhccCCcEEEEEEe
Confidence 53 3344577889999999999999999874
|
It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A .... |
| >PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family | Back alignment and domain information |
|---|
Probab=97.70 E-value=6.1e-05 Score=69.17 Aligned_cols=93 Identities=18% Similarity=0.211 Sum_probs=63.6
Q ss_pred HHcCCCCCCEEEEEcCccCcccc----cCCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeecCCCCCCCCCccEE
Q 016157 116 FLNSLPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAA 183 (394)
Q Consensus 116 ~l~~l~~g~~VLDvGCG~G~~l~----~~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~lp~~~~~fD~V 183 (394)
+.....+|..|||+-||-|.|+- ..+...|+++|+++.+++.+++. .+..+.+|+..++. ...||-|
T Consensus 95 i~~~v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~-~~~~drv 173 (200)
T PF02475_consen 95 IANLVKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLP-EGKFDRV 173 (200)
T ss_dssp HHTC--TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG----TT-EEEE
T ss_pred HHhcCCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcC-ccccCEE
Confidence 34456789999999999999842 24677899999999999888775 36789999998765 7899999
Q ss_pred EehhhhhhcCChhHHHHHHHHHHhccccCcEEE
Q 016157 184 ISIAVLHHLSTESRRKKAIEELVRVVKKGSLVL 216 (394)
Q Consensus 184 i~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~ll 216 (394)
++... .. ...+|..+.+++|+||.+-
T Consensus 174 im~lp-----~~--~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 174 IMNLP-----ES--SLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp EE--T-----SS--GGGGHHHHHHHEEEEEEEE
T ss_pred EECCh-----HH--HHHHHHHHHHHhcCCcEEE
Confidence 98542 11 3468888999999998764
|
Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A. |
| >KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.69 E-value=7e-05 Score=67.09 Aligned_cols=105 Identities=18% Similarity=0.265 Sum_probs=71.0
Q ss_pred cCCCCCCEEEEEcCccCcccc-----cCCCcEEEEEeCCHHHHHHHHHcCCeEEEe-ecCCC--------CCCCCCccEE
Q 016157 118 NSLPSGSLVLDAGCGNGKYLG-----LNPDCFFVGCDISPSLIKICVDRGHEVLVA-DAVNL--------PYRSDFGDAA 183 (394)
Q Consensus 118 ~~l~~g~~VLDvGCG~G~~l~-----~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~-D~~~l--------p~~~~~fD~V 183 (394)
.-+.|+.+|||+||.+|.++. ..|...|.|+|+-. +.--.|..++++ |+.+. .+++...|+|
T Consensus 65 ~~l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh----~~p~~Ga~~i~~~dvtdp~~~~ki~e~lp~r~VdvV 140 (232)
T KOG4589|consen 65 RFLRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLH----IEPPEGATIIQGNDVTDPETYRKIFEALPNRPVDVV 140 (232)
T ss_pred cccCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeee----ccCCCCcccccccccCCHHHHHHHHHhCCCCcccEE
Confidence 346789999999999999864 26888999999732 222236677776 66552 1356788999
Q ss_pred Eehhh--------hhhcCChhHHHHHHHHHHhccccCcEEEEEEcCccchh
Q 016157 184 ISIAV--------LHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQED 226 (394)
Q Consensus 184 i~~~v--------l~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~~~~~ 226 (394)
++-.. ..|...-+.-..+|.-....++|+|.+++-+|...+..
T Consensus 141 lSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g~e~~ 191 (232)
T KOG4589|consen 141 LSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDGSEEA 191 (232)
T ss_pred EeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecCCchH
Confidence 98432 22222111123455556677899999999999876643
|
|
| >PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00012 Score=73.83 Aligned_cols=89 Identities=21% Similarity=0.140 Sum_probs=67.9
Q ss_pred CCEEEEEcCccCcccc----cCCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeecCCCCCCCCCccEEEehhhhhh
Q 016157 123 GSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFGDAAISIAVLHH 191 (394)
Q Consensus 123 g~~VLDvGCG~G~~l~----~~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~lp~~~~~fD~Vi~~~vl~h 191 (394)
+.+|||++||+|.+.- ..+...|+++|+++.+++.++++ ++.+..+|+..+....+.||+|++.-.
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lDP~--- 134 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHEERKFDVVDIDPF--- 134 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEECCC---
Confidence 4689999999999742 12334899999999999999876 245888888664221467999998642
Q ss_pred cCChhHHHHHHHHHHhccccCcEEEEE
Q 016157 192 LSTESRRKKAIEELVRVVKKGSLVLIT 218 (394)
Q Consensus 192 l~~~~~~~~~L~ei~r~LkpGG~lli~ 218 (394)
.. +..+|..+.+.+++||.++++
T Consensus 135 -Gs---~~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 135 -GS---PAPFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred -CC---cHHHHHHHHHHhcCCCEEEEE
Confidence 22 467888878889999999999
|
|
| >PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00015 Score=69.93 Aligned_cols=96 Identities=20% Similarity=0.196 Sum_probs=66.9
Q ss_pred CEEEEEcCccCccccc----C-CCcEEEEEeCCHHHHHHHHHc--CCeE-----EEeecC--CCCCCCCCccEEEehhhh
Q 016157 124 SLVLDAGCGNGKYLGL----N-PDCFFVGCDISPSLIKICVDR--GHEV-----LVADAV--NLPYRSDFGDAAISIAVL 189 (394)
Q Consensus 124 ~~VLDvGCG~G~~l~~----~-~~~~v~gvD~S~~~l~~a~~~--~i~~-----~~~D~~--~lp~~~~~fD~Vi~~~vl 189 (394)
.+|||+|||+|.-+-. . .-..++++|.|+.|++.++.- +..- ...+.. ..++ ...|+|++.++|
T Consensus 35 ~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~DLvi~s~~L 112 (274)
T PF09243_consen 35 RSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFLPF--PPDDLVIASYVL 112 (274)
T ss_pred ceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhcccccC--CCCcEEEEehhh
Confidence 4899999999985321 2 234899999999999988765 1100 011111 1122 234999999999
Q ss_pred hhcCChhHHHHHHHHHHhccccCcEEEEEEcCccc
Q 016157 190 HHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQ 224 (394)
Q Consensus 190 ~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~~~ 224 (394)
..+++ +.+..+++.+.+.+.+ .|+|...+...
T Consensus 113 ~EL~~-~~r~~lv~~LW~~~~~--~LVlVEpGt~~ 144 (274)
T PF09243_consen 113 NELPS-AARAELVRSLWNKTAP--VLVLVEPGTPA 144 (274)
T ss_pred hcCCc-hHHHHHHHHHHHhccC--cEEEEcCCChH
Confidence 99999 5589999999888876 77777765443
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation |
| >PRK11727 23S rRNA mA1618 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00011 Score=72.31 Aligned_cols=70 Identities=21% Similarity=0.236 Sum_probs=49.6
Q ss_pred CCCEEEEEcCccCccc----ccCCCcEEEEEeCCHHHHHHHHHc---C------CeEEE-eecCCCC----CCCCCccEE
Q 016157 122 SGSLVLDAGCGNGKYL----GLNPDCFFVGCDISPSLIKICVDR---G------HEVLV-ADAVNLP----YRSDFGDAA 183 (394)
Q Consensus 122 ~g~~VLDvGCG~G~~l----~~~~~~~v~gvD~S~~~l~~a~~~---~------i~~~~-~D~~~lp----~~~~~fD~V 183 (394)
++.++||||||+|... ...++..++|+|+++.+++.|++. + +++.. .|...+. ...+.||+|
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDli 193 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDAT 193 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEE
Confidence 4579999999998642 235678999999999999999876 2 33432 3333221 235789999
Q ss_pred Eehhhhhh
Q 016157 184 ISIAVLHH 191 (394)
Q Consensus 184 i~~~vl~h 191 (394)
+|+--++-
T Consensus 194 vcNPPf~~ 201 (321)
T PRK11727 194 LCNPPFHA 201 (321)
T ss_pred EeCCCCcC
Confidence 99876553
|
|
| >KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription] | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00012 Score=70.95 Aligned_cols=95 Identities=17% Similarity=0.147 Sum_probs=68.8
Q ss_pred CCCEEEEEcCccCccc--ccCCC-cEEEEEeCCHHHHHHHHHc--------CCeEEEeecCCCCCCCCCccEEEehhhhh
Q 016157 122 SGSLVLDAGCGNGKYL--GLNPD-CFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISIAVLH 190 (394)
Q Consensus 122 ~g~~VLDvGCG~G~~l--~~~~~-~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~lp~~~~~fD~Vi~~~vl~ 190 (394)
.|..|||||||+|.+. ....| .+|++++.| +|.+.|++. .|.++.+-++++.++ +..|+||+--.-.
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS-~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLP-Ek~DviISEPMG~ 254 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQAGAKKVYAVEAS-EMAQYARKLVASNNLADRITVIPGKIEDIELP-EKVDVIISEPMGY 254 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHhCcceEEEEehh-HHHHHHHHHHhcCCccceEEEccCccccccCc-hhccEEEeccchh
Confidence 4678999999999863 33444 489999976 688888875 478899999988774 5789999854433
Q ss_pred hcCChhHHHHHHHHHHhccccCcEEEEEE
Q 016157 191 HLSTESRRKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 191 hl~~~~~~~~~L~ei~r~LkpGG~lli~~ 219 (394)
-+-+ +|..+.--.+.+.|||.|.++=++
T Consensus 255 mL~N-ERMLEsYl~Ark~l~P~GkMfPT~ 282 (517)
T KOG1500|consen 255 MLVN-ERMLESYLHARKWLKPNGKMFPTV 282 (517)
T ss_pred hhhh-HHHHHHHHHHHhhcCCCCcccCcc
Confidence 3433 444455555679999999876543
|
|
| >TIGR00095 RNA methyltransferase, RsmD family | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00031 Score=63.99 Aligned_cols=96 Identities=13% Similarity=0.104 Sum_probs=63.7
Q ss_pred CCCEEEEEcCccCcccc--cCCCc-EEEEEeCCHHHHHHHHHc--------CCeEEEeecCCC-C-C-CC-CCccEEEeh
Q 016157 122 SGSLVLDAGCGNGKYLG--LNPDC-FFVGCDISPSLIKICVDR--------GHEVLVADAVNL-P-Y-RS-DFGDAAISI 186 (394)
Q Consensus 122 ~g~~VLDvGCG~G~~l~--~~~~~-~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~l-p-~-~~-~~fD~Vi~~ 186 (394)
+|.++||++||+|.+.- ...+. .|+++|.++.+++.++++ +++++.+|+... . + .. ..||+|+.-
T Consensus 49 ~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~D 128 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYLD 128 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEEC
Confidence 57899999999998732 23343 899999999999988876 257888998542 2 1 12 247888874
Q ss_pred hhhhhcCChhHHHHHHHHHH--hccccCcEEEEEEcC
Q 016157 187 AVLHHLSTESRRKKAIEELV--RVVKKGSLVLITVWA 221 (394)
Q Consensus 187 ~vl~hl~~~~~~~~~L~ei~--r~LkpGG~lli~~~~ 221 (394)
--... .. ...++..+. .+|+++|.+++....
T Consensus 129 PPy~~-~~---~~~~l~~l~~~~~l~~~~iiv~E~~~ 161 (189)
T TIGR00095 129 PPFFN-GA---LQALLELCENNWILEDTVLIVVEEDR 161 (189)
T ss_pred cCCCC-Cc---HHHHHHHHHHCCCCCCCeEEEEEecC
Confidence 43321 11 234444443 468899987776543
|
This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases. |
| >KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00039 Score=62.17 Aligned_cols=100 Identities=14% Similarity=0.345 Sum_probs=68.8
Q ss_pred CCEEEEEcCccCcccc-----cCCCcEEEEEeCCHHHHHHHHH----c--CCeEEEeecCCCCCCCCCccEEEehhhh--
Q 016157 123 GSLVLDAGCGNGKYLG-----LNPDCFFVGCDISPSLIKICVD----R--GHEVLVADAVNLPYRSDFGDAAISIAVL-- 189 (394)
Q Consensus 123 g~~VLDvGCG~G~~l~-----~~~~~~v~gvD~S~~~l~~a~~----~--~i~~~~~D~~~lp~~~~~fD~Vi~~~vl-- 189 (394)
...+||||||+|.... ..++..+.++|+++.+++.-.+ + +++.++.|+..-- ..++.|+++.+--.
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~l-~~~~VDvLvfNPPYVp 122 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTDLLSGL-RNESVDVLVFNPPYVP 122 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHhhh-ccCCccEEEECCCcCc
Confidence 4589999999998532 3678899999999998877443 3 4678888887632 33778887764221
Q ss_pred --------h-----hcC-ChhH--HHHHHHHHHhccccCcEEEEEEcCcc
Q 016157 190 --------H-----HLS-TESR--RKKAIEELVRVVKKGSLVLITVWAVE 223 (394)
Q Consensus 190 --------~-----hl~-~~~~--~~~~L~ei~r~LkpGG~lli~~~~~~ 223 (394)
+ +.. ...+ ..+++..+-.+|.|.|.+++.....+
T Consensus 123 t~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N 172 (209)
T KOG3191|consen 123 TSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRAN 172 (209)
T ss_pred CCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhc
Confidence 1 110 0011 46777778888999999999876543
|
|
| >COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00029 Score=68.09 Aligned_cols=96 Identities=20% Similarity=0.185 Sum_probs=73.3
Q ss_pred cCCCCCCEEEEEcCccCcccc----cCCCcEEEEEeCCHHHHHHHHHc-----------CCeEEEeecCCCC-CCCCCcc
Q 016157 118 NSLPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR-----------GHEVLVADAVNLP-YRSDFGD 181 (394)
Q Consensus 118 ~~l~~g~~VLDvGCG~G~~l~----~~~~~~v~gvD~S~~~l~~a~~~-----------~i~~~~~D~~~lp-~~~~~fD 181 (394)
.+..| .+||-||-|.|..++ ..+-.+++.+|+.+..++.|++. .++++.+|....- -...+||
T Consensus 73 ah~~p-k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fD 151 (282)
T COG0421 73 AHPNP-KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFD 151 (282)
T ss_pred hCCCC-CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCC
Confidence 34445 599999999999865 34556899999999999999987 3567788876642 2234899
Q ss_pred EEEehhhhh-----hcCChhHHHHHHHHHHhccccCcEEEEE
Q 016157 182 AAISIAVLH-----HLSTESRRKKAIEELVRVVKKGSLVLIT 218 (394)
Q Consensus 182 ~Vi~~~vl~-----hl~~~~~~~~~L~ei~r~LkpGG~lli~ 218 (394)
+||+-..-. .+- -..+++.+.++|+++|.++..
T Consensus 152 vIi~D~tdp~gp~~~Lf----t~eFy~~~~~~L~~~Gi~v~q 189 (282)
T COG0421 152 VIIVDSTDPVGPAEALF----TEEFYEGCRRALKEDGIFVAQ 189 (282)
T ss_pred EEEEcCCCCCCcccccC----CHHHHHHHHHhcCCCcEEEEe
Confidence 999855432 111 278999999999999999988
|
|
| >PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 [] | Back alignment and domain information |
|---|
Probab=97.52 E-value=7.9e-05 Score=68.76 Aligned_cols=94 Identities=21% Similarity=0.331 Sum_probs=57.1
Q ss_pred CCCCCCEEEEEcCccCcccc---cCCCc-EEEEEeCCHHHHHHHHHc----------------CCeEEEeecCCCCCCC-
Q 016157 119 SLPSGSLVLDAGCGNGKYLG---LNPDC-FFVGCDISPSLIKICVDR----------------GHEVLVADAVNLPYRS- 177 (394)
Q Consensus 119 ~l~~g~~VLDvGCG~G~~l~---~~~~~-~v~gvD~S~~~l~~a~~~----------------~i~~~~~D~~~lp~~~- 177 (394)
.+.++...+|||||.|..+- ...++ ..+||++.+...+.|... .+++..+|+.+.++..
T Consensus 39 ~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~~~~~~ 118 (205)
T PF08123_consen 39 NLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDPDFVKD 118 (205)
T ss_dssp T--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTHHHHHH
T ss_pred CCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccccHhHhh
Confidence 35678899999999999632 23344 599999999988777542 2467788887654221
Q ss_pred --CCccEEEehhhhhhcCChhHHHHHHHHHHhccccCcEEE
Q 016157 178 --DFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVL 216 (394)
Q Consensus 178 --~~fD~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~ll 216 (394)
...|+|+++... + +++ ....|.++..-||+|-+++
T Consensus 119 ~~s~AdvVf~Nn~~--F-~~~-l~~~L~~~~~~lk~G~~II 155 (205)
T PF08123_consen 119 IWSDADVVFVNNTC--F-DPD-LNLALAELLLELKPGARII 155 (205)
T ss_dssp HGHC-SEEEE--TT--T--HH-HHHHHHHHHTTS-TT-EEE
T ss_pred hhcCCCEEEEeccc--c-CHH-HHHHHHHHHhcCCCCCEEE
Confidence 346999998764 2 222 6778888889999987754
|
H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A .... |
| >COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0013 Score=65.89 Aligned_cols=116 Identities=20% Similarity=0.277 Sum_probs=81.2
Q ss_pred HHHHHcCCCCCCEEEEEcCccCcc----ccc--CCCcEEEEEeCCHHHHHHHHHc----C---CeEEEeecCCCC---CC
Q 016157 113 VATFLNSLPSGSLVLDAGCGNGKY----LGL--NPDCFFVGCDISPSLIKICVDR----G---HEVLVADAVNLP---YR 176 (394)
Q Consensus 113 l~~~l~~l~~g~~VLDvGCG~G~~----l~~--~~~~~v~gvD~S~~~l~~a~~~----~---i~~~~~D~~~lp---~~ 176 (394)
+...+....||.+|||+.++.|.= +.+ ..+..|+++|+++.-++..+++ | +.++..|...++ ..
T Consensus 147 l~a~~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~ 226 (355)
T COG0144 147 LPALVLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLPG 226 (355)
T ss_pred HHHHHcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccccccccc
Confidence 444556778999999999999972 233 3356789999999877776665 3 457788876654 22
Q ss_pred CCCccEEEe------hhhhhhcCCh-------------hHHHHHHHHHHhccccCcEEEEEEcCccchhhh
Q 016157 177 SDFGDAAIS------IAVLHHLSTE-------------SRRKKAIEELVRVVKKGSLVLITVWAVEQEDKS 228 (394)
Q Consensus 177 ~~~fD~Vi~------~~vl~hl~~~-------------~~~~~~L~ei~r~LkpGG~lli~~~~~~~~~~~ 228 (394)
.+.||.|+. .++++-=++. ....++|..+.++|||||.|+.++-+...+++.
T Consensus 227 ~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~eENE 297 (355)
T COG0144 227 GEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLTPEENE 297 (355)
T ss_pred cCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCchhcCH
Confidence 235999987 3344221110 014688999999999999999999887766544
|
|
| >COG4627 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0001 Score=64.15 Aligned_cols=86 Identities=20% Similarity=0.306 Sum_probs=60.8
Q ss_pred EEEEEcCccCcccccCCCcEEEEEeCCHHHHHHHHHcCCeEEEeecCCCCCCCCCccEEEehhhhhhcCChhHHHHHHHH
Q 016157 125 LVLDAGCGNGKYLGLNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEE 204 (394)
Q Consensus 125 ~VLDvGCG~G~~l~~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~lp~~~~~fD~Vi~~~vl~hl~~~~~~~~~L~e 204 (394)
-.+-||||.=.+ .|+...+-+.-.+ -+.++.--....+|.+++.|+|.+-+|++|+.-.+ -..++++
T Consensus 5 ~kv~ig~G~~r~---npgWi~~d~ed~~---------~vdlvc~As~e~~F~dns~d~iyaeHvlEHlt~~E-g~~alke 71 (185)
T COG4627 5 EKVKIGAGGKRV---NPGWIITDVEDRP---------EVDLVCRASNESMFEDNSVDAIYAEHVLEHLTYDE-GTSALKE 71 (185)
T ss_pred eEEEEecccccc---CCCceeeehhccc---------ccchhhhhhhhccCCCcchHHHHHHHHHHHHhHHH-HHHHHHH
Confidence 357789987433 4555433222111 12222222234578899999999999999998766 7899999
Q ss_pred HHhccccCcEEEEEEcCcc
Q 016157 205 LVRVVKKGSLVLITVWAVE 223 (394)
Q Consensus 205 i~r~LkpGG~lli~~~~~~ 223 (394)
++|.|||||.|-|.++...
T Consensus 72 chr~Lrp~G~LriAvPdl~ 90 (185)
T COG4627 72 CHRFLRPGGKLRIAVPDLK 90 (185)
T ss_pred HHHHhCcCcEEEEEcCCcc
Confidence 9999999999999997654
|
|
| >KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown] | Back alignment and domain information |
|---|
Probab=97.42 E-value=7e-05 Score=68.08 Aligned_cols=92 Identities=16% Similarity=0.186 Sum_probs=72.1
Q ss_pred CCEEEEEcCccCccccc-CCCc-EEEEEeCCHHHHHHHHHcCCeEEEeecCCCCCCCCCccEEEehhhhhhcCChhHHHH
Q 016157 123 GSLVLDAGCGNGKYLGL-NPDC-FFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKK 200 (394)
Q Consensus 123 g~~VLDvGCG~G~~l~~-~~~~-~v~gvD~S~~~l~~a~~~~i~~~~~D~~~lp~~~~~fD~Vi~~~vl~hl~~~~~~~~ 200 (394)
..++||+|.|.|..... .|.. +|++.++|..|....++++..++-. .+..-.+-.||+|.|..++.--.+ +-+
T Consensus 113 ~~~lLDlGAGdGeit~~m~p~feevyATElS~tMr~rL~kk~ynVl~~--~ew~~t~~k~dli~clNlLDRc~~---p~k 187 (288)
T KOG3987|consen 113 PVTLLDLGAGDGEITLRMAPTFEEVYATELSWTMRDRLKKKNYNVLTE--IEWLQTDVKLDLILCLNLLDRCFD---PFK 187 (288)
T ss_pred CeeEEeccCCCcchhhhhcchHHHHHHHHhhHHHHHHHhhcCCceeee--hhhhhcCceeehHHHHHHHHhhcC---hHH
Confidence 36899999999998765 3443 7999999999999999987655432 122222346999999999887666 789
Q ss_pred HHHHHHhcccc-CcEEEEEE
Q 016157 201 AIEELVRVVKK-GSLVLITV 219 (394)
Q Consensus 201 ~L~ei~r~Lkp-GG~lli~~ 219 (394)
.|+.|+.+|+| .|++++..
T Consensus 188 LL~Di~~vl~psngrvivaL 207 (288)
T KOG3987|consen 188 LLEDIHLVLAPSNGRVIVAL 207 (288)
T ss_pred HHHHHHHHhccCCCcEEEEE
Confidence 99999999999 89888774
|
|
| >PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2 | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.00063 Score=64.56 Aligned_cols=94 Identities=15% Similarity=0.160 Sum_probs=68.7
Q ss_pred CCCEEEEEcCccCcccc----cCCCcEEEEEeCCHHHHHHHHHc-----------CCeEEEeecCCCC-CCCC-CccEEE
Q 016157 122 SGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR-----------GHEVLVADAVNLP-YRSD-FGDAAI 184 (394)
Q Consensus 122 ~g~~VLDvGCG~G~~l~----~~~~~~v~gvD~S~~~l~~a~~~-----------~i~~~~~D~~~lp-~~~~-~fD~Vi 184 (394)
...+||=||-|.|..++ ..+...++.+|+++.+++.|++. +++++.+|+...- -..+ .||+|+
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvIi 155 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVII 155 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEEE
T ss_pred CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEEE
Confidence 45799999999998653 23346899999999999999875 4688999986532 2234 899999
Q ss_pred ehhhh-----hhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 016157 185 SIAVL-----HHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 185 ~~~vl-----~hl~~~~~~~~~L~ei~r~LkpGG~lli~~ 219 (394)
.-..- .++- -..+++.+.+.|+|||.+++..
T Consensus 156 ~D~~dp~~~~~~l~----t~ef~~~~~~~L~~~Gv~v~~~ 191 (246)
T PF01564_consen 156 VDLTDPDGPAPNLF----TREFYQLCKRRLKPDGVLVLQA 191 (246)
T ss_dssp EESSSTTSCGGGGS----SHHHHHHHHHHEEEEEEEEEEE
T ss_pred EeCCCCCCCccccc----CHHHHHHHHhhcCCCcEEEEEc
Confidence 84332 1122 2689999999999999999886
|
5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B .... |
| >KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.00034 Score=66.27 Aligned_cols=67 Identities=22% Similarity=0.254 Sum_probs=56.6
Q ss_pred CCCCCCEEEEEcCccCccccc--CCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeecCCCCCCCCCccEEEehh
Q 016157 119 SLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISIA 187 (394)
Q Consensus 119 ~l~~g~~VLDvGCG~G~~l~~--~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~lp~~~~~fD~Vi~~~ 187 (394)
.++++..|||||.|||.++.. ..+..|+++++.+.|+....++ .++++++|+...+++ .||.+|++-
T Consensus 55 ~~k~tD~VLEvGPGTGnLT~~lLe~~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~P--~fd~cVsNl 131 (315)
T KOG0820|consen 55 DLKPTDVVLEVGPGTGNLTVKLLEAGKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDLP--RFDGCVSNL 131 (315)
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHhcCeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCCc--ccceeeccC
Confidence 467889999999999998653 6778999999999999998887 378999999987653 589999853
|
|
| >PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.00021 Score=69.10 Aligned_cols=102 Identities=18% Similarity=0.185 Sum_probs=68.6
Q ss_pred CCCCEEEEEcCccCcccc--cCCCc-EEEEEeCCHHHHHHHHHc---------CCeEEEeecCCC-C--CCCCCccEEEe
Q 016157 121 PSGSLVLDAGCGNGKYLG--LNPDC-FFVGCDISPSLIKICVDR---------GHEVLVADAVNL-P--YRSDFGDAAIS 185 (394)
Q Consensus 121 ~~g~~VLDvGCG~G~~l~--~~~~~-~v~gvD~S~~~l~~a~~~---------~i~~~~~D~~~l-p--~~~~~fD~Vi~ 185 (394)
..|.+|||+=|=||.+.- ...|+ .|+.+|.|..+++.|+++ .++++.+|+... . -..++||+||+
T Consensus 122 ~~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIl 201 (286)
T PF10672_consen 122 AKGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIIL 201 (286)
T ss_dssp CTTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE
T ss_pred cCCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEEE
Confidence 457899999999999753 24454 899999999999999987 357899998762 2 13468999998
Q ss_pred hhh-hh--hcCChhHHHHHHHHHHhccccCcEEEEEEcCc
Q 016157 186 IAV-LH--HLSTESRRKKAIEELVRVVKKGSLVLITVWAV 222 (394)
Q Consensus 186 ~~v-l~--hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~ 222 (394)
--- +. .+.-......++..+.++|+|||.++++.-+.
T Consensus 202 DPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs~ 241 (286)
T PF10672_consen 202 DPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCSH 241 (286)
T ss_dssp --SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--T
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCc
Confidence 210 00 00001124678899999999999998876543
|
The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A. |
| >TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0002 Score=71.55 Aligned_cols=88 Identities=10% Similarity=0.076 Sum_probs=58.3
Q ss_pred CEEEEEcCccCccccc--CCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeecCCCCCC----------C------C
Q 016157 124 SLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYR----------S------D 178 (394)
Q Consensus 124 ~~VLDvGCG~G~~l~~--~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~lp~~----------~------~ 178 (394)
.+|||+|||+|.+... .....|+|+|+++.+++.|+++ +++++.+|+.++.-. . .
T Consensus 199 ~~vlDl~~G~G~~sl~la~~~~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQNFRRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFTQAMNGVREFRRLKGIDLKSY 278 (353)
T ss_pred CcEEEEeccccHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHHHHHHhhccccccccccccccC
Confidence 4799999999987432 1124899999999999999886 467899998763210 1 1
Q ss_pred CccEEEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 016157 179 FGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 179 ~fD~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~ 219 (394)
.||+|+.---=.-+ ...+++.+. +|++.++++.
T Consensus 279 ~~d~v~lDPPR~G~-----~~~~l~~l~---~~~~ivYvsC 311 (353)
T TIGR02143 279 NCSTIFVDPPRAGL-----DPDTCKLVQ---AYERILYISC 311 (353)
T ss_pred CCCEEEECCCCCCC-----cHHHHHHHH---cCCcEEEEEc
Confidence 37988874220000 234445444 4788888775
|
This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA. |
| >COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.00057 Score=65.00 Aligned_cols=68 Identities=19% Similarity=0.244 Sum_probs=56.0
Q ss_pred CCCCCEEEEEcCccCccccc--CCCcEEEEEeCCHHHHHHHHHc-----CCeEEEeecCCCCCCCC-CccEEEehh
Q 016157 120 LPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR-----GHEVLVADAVNLPYRSD-FGDAAISIA 187 (394)
Q Consensus 120 l~~g~~VLDvGCG~G~~l~~--~~~~~v~gvD~S~~~l~~a~~~-----~i~~~~~D~~~lp~~~~-~fD~Vi~~~ 187 (394)
+.++..|||||+|.|.++.. ..+..|+++++.+.++...+++ +++++.+|+...+++.- .++.|+++-
T Consensus 28 ~~~~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD~~l~~~L~~~~~~~~n~~vi~~DaLk~d~~~l~~~~~vVaNl 103 (259)
T COG0030 28 ISPGDNVLEIGPGLGALTEPLLERAARVTAIEIDRRLAEVLKERFAPYDNLTVINGDALKFDFPSLAQPYKVVANL 103 (259)
T ss_pred CCCCCeEEEECCCCCHHHHHHHhhcCeEEEEEeCHHHHHHHHHhcccccceEEEeCchhcCcchhhcCCCEEEEcC
Confidence 45588999999999998753 4566899999999999998887 58999999999887643 567787754
|
|
| >COG2520 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0015 Score=64.51 Aligned_cols=104 Identities=17% Similarity=0.207 Sum_probs=82.1
Q ss_pred HHHcCCCCCCEEEEEcCccCccccc---CCCcEEEEEeCCHHHHHHHHHc-------C-CeEEEeecCCCCCCCCCccEE
Q 016157 115 TFLNSLPSGSLVLDAGCGNGKYLGL---NPDCFFVGCDISPSLIKICVDR-------G-HEVLVADAVNLPYRSDFGDAA 183 (394)
Q Consensus 115 ~~l~~l~~g~~VLDvGCG~G~~l~~---~~~~~v~gvD~S~~~l~~a~~~-------~-i~~~~~D~~~lp~~~~~fD~V 183 (394)
..+....+|.+|||+=+|-|.|+-. .....|+++|+++.+++..+++ + +..+++|+...+...+.||-|
T Consensus 181 Rva~~v~~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrI 260 (341)
T COG2520 181 RVAELVKEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADRI 260 (341)
T ss_pred HHHhhhcCCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCCEE
Confidence 3444556799999999999998532 2223499999999999998876 3 678999999987655889999
Q ss_pred EehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCccch
Q 016157 184 ISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQE 225 (394)
Q Consensus 184 i~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~~~~ 225 (394)
++...- + ...++..+.+.+++||.+.++.+..+..
T Consensus 261 im~~p~----~---a~~fl~~A~~~~k~~g~iHyy~~~~e~~ 295 (341)
T COG2520 261 IMGLPK----S---AHEFLPLALELLKDGGIIHYYEFVPEDD 295 (341)
T ss_pred EeCCCC----c---chhhHHHHHHHhhcCcEEEEEeccchhh
Confidence 987542 2 4678888999999999999998876553
|
|
| >PRK00536 speE spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0014 Score=62.63 Aligned_cols=87 Identities=9% Similarity=-0.006 Sum_probs=64.8
Q ss_pred CCCCEEEEEcCccCccccc---CCCcEEEEEeCCHHHHHHHHHc-----------CCeEEEeecCCCCCCCCCccEEEeh
Q 016157 121 PSGSLVLDAGCGNGKYLGL---NPDCFFVGCDISPSLIKICVDR-----------GHEVLVADAVNLPYRSDFGDAAISI 186 (394)
Q Consensus 121 ~~g~~VLDvGCG~G~~l~~---~~~~~v~gvD~S~~~l~~a~~~-----------~i~~~~~D~~~lp~~~~~fD~Vi~~ 186 (394)
+...+||=||.|.|..++. .+. +|+-+|+.+.+++.|++. +++++. .+.+ ...++||+||+-
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh~~-~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~-~~~~--~~~~~fDVIIvD 146 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKYDT-HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAK-QLLD--LDIKKYDLIICL 146 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCcCC-eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEee-hhhh--ccCCcCCEEEEc
Confidence 3347999999999997652 333 999999999999999984 344443 1111 123689999986
Q ss_pred hhhhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 016157 187 AVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 187 ~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~ 219 (394)
.. . ...+.+.+.+.|+|||.++...
T Consensus 147 s~----~----~~~fy~~~~~~L~~~Gi~v~Qs 171 (262)
T PRK00536 147 QE----P----DIHKIDGLKRMLKEDGVFISVA 171 (262)
T ss_pred CC----C----ChHHHHHHHHhcCCCcEEEECC
Confidence 42 2 3578899999999999999864
|
|
| >PRK05031 tRNA (uracil-5-)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.00041 Score=69.60 Aligned_cols=88 Identities=13% Similarity=0.102 Sum_probs=59.2
Q ss_pred CEEEEEcCccCccccc--CCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeecCCC-C-CC--------------CC
Q 016157 124 SLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNL-P-YR--------------SD 178 (394)
Q Consensus 124 ~~VLDvGCG~G~~l~~--~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~l-p-~~--------------~~ 178 (394)
.+|||++||+|.+... .....|+|+|+++.+++.|+++ +++++.+|+.+. + +. ..
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~ 287 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNFRRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFTQAMNGVREFNRLKGIDLKSY 287 (362)
T ss_pred CeEEEEeccccHHHHHHHhhCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcccccccccccccCC
Confidence 5799999999987432 2224899999999999999876 467899998662 1 10 12
Q ss_pred CccEEEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 016157 179 FGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 179 ~fD~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~ 219 (394)
.||+|+.---=.-+ ...+++.+.+ |++.++++.
T Consensus 288 ~~D~v~lDPPR~G~-----~~~~l~~l~~---~~~ivyvSC 320 (362)
T PRK05031 288 NFSTIFVDPPRAGL-----DDETLKLVQA---YERILYISC 320 (362)
T ss_pred CCCEEEECCCCCCC-----cHHHHHHHHc---cCCEEEEEe
Confidence 58999874321111 2344455543 778777775
|
|
| >COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0028 Score=58.72 Aligned_cols=91 Identities=22% Similarity=0.131 Sum_probs=68.3
Q ss_pred CCEEEEEcCccCcc---cc-cCCCcEEEEEeCCHHHH---HHHHHc----CCeEEEeecCCCCCCCCCccEEEehhhhhh
Q 016157 123 GSLVLDAGCGNGKY---LG-LNPDCFFVGCDISPSLI---KICVDR----GHEVLVADAVNLPYRSDFGDAAISIAVLHH 191 (394)
Q Consensus 123 g~~VLDvGCG~G~~---l~-~~~~~~v~gvD~S~~~l---~~a~~~----~i~~~~~D~~~lp~~~~~fD~Vi~~~vl~h 191 (394)
+.+++|||+|.|.- +. ..|...++-+|....-+ +.+.+. |++++++-+++..-....||+|++-++-
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~~~~~D~vtsRAva-- 145 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQEKKQYDVVTSRAVA-- 145 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcccccccCcEEEeehcc--
Confidence 57999999999973 22 47888899999987644 444433 6889999999876322229999998763
Q ss_pred cCChhHHHHHHHHHHhccccCcEEEEEEc
Q 016157 192 LSTESRRKKAIEELVRVVKKGSLVLITVW 220 (394)
Q Consensus 192 l~~~~~~~~~L~ei~r~LkpGG~lli~~~ 220 (394)
+ ....+.-+..++|+||.++..-+
T Consensus 146 --~---L~~l~e~~~pllk~~g~~~~~k~ 169 (215)
T COG0357 146 --S---LNVLLELCLPLLKVGGGFLAYKG 169 (215)
T ss_pred --c---hHHHHHHHHHhcccCCcchhhhH
Confidence 2 66778888899999999876654
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0021 Score=69.97 Aligned_cols=78 Identities=19% Similarity=0.154 Sum_probs=53.5
Q ss_pred EEEEEeCCHHHHHHHHHc----C----CeEEEeecCCCCCC--CCCccEEEehhhhh-hcCChhHHHHH---HHHHHhcc
Q 016157 144 FFVGCDISPSLIKICVDR----G----HEVLVADAVNLPYR--SDFGDAAISIAVLH-HLSTESRRKKA---IEELVRVV 209 (394)
Q Consensus 144 ~v~gvD~S~~~l~~a~~~----~----i~~~~~D~~~lp~~--~~~fD~Vi~~~vl~-hl~~~~~~~~~---L~ei~r~L 209 (394)
.++|+|+++.+++.|+++ + +.+.++|+.+++.+ .++||+|+++--.- -+.+......+ |.+..+..
T Consensus 258 ~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk~~ 337 (702)
T PRK11783 258 KFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLKQQ 337 (702)
T ss_pred eEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHHHh
Confidence 699999999999999987 3 57889999887644 35799999984322 22222222333 44444444
Q ss_pred ccCcEEEEEEcC
Q 016157 210 KKGSLVLITVWA 221 (394)
Q Consensus 210 kpGG~lli~~~~ 221 (394)
.+|+.+++.+..
T Consensus 338 ~~g~~~~llt~~ 349 (702)
T PRK11783 338 FGGWNAALFSSS 349 (702)
T ss_pred CCCCeEEEEeCC
Confidence 599998887643
|
|
| >PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0013 Score=62.83 Aligned_cols=100 Identities=21% Similarity=0.220 Sum_probs=66.1
Q ss_pred CEEEEEcCccCcc--c-----ccCCCcEEEEEeCCHHHHHHHHHc-----C--CeEEEeecCCCC-----------CCCC
Q 016157 124 SLVLDAGCGNGKY--L-----GLNPDCFFVGCDISPSLIKICVDR-----G--HEVLVADAVNLP-----------YRSD 178 (394)
Q Consensus 124 ~~VLDvGCG~G~~--l-----~~~~~~~v~gvD~S~~~l~~a~~~-----~--i~~~~~D~~~lp-----------~~~~ 178 (394)
...||||||-=.- . ...|..+|+-+|..+-.+..++.. + ..++++|+.+.. +.-+
T Consensus 70 rQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~p~~~~~lD~~ 149 (267)
T PF04672_consen 70 RQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEAILAHPEVRGLLDFD 149 (267)
T ss_dssp -EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCSHHHHCC--TT
T ss_pred ceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcCHHHHhcCCCC
Confidence 5899999994321 1 137899999999999998887765 3 578999998632 1112
Q ss_pred CccEEEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCcc
Q 016157 179 FGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVE 223 (394)
Q Consensus 179 ~fD~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~~ 223 (394)
..=.++++.+|||+++.+.+..+++.+...|.||..|.|+....+
T Consensus 150 rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d 194 (267)
T PF04672_consen 150 RPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATDD 194 (267)
T ss_dssp S--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-T
T ss_pred CCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCCC
Confidence 334788899999999977799999999999999999999987654
|
; PDB: 3GIW_A 3GO4_A 2QE6_A. |
| >PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.00057 Score=66.46 Aligned_cols=75 Identities=19% Similarity=0.208 Sum_probs=55.4
Q ss_pred HHHHHHcCCCCCCEEEEEcCccCcccc----cC-CCcEEEEEeCCHHHHHHHHHc-----CCeEEEeecCCCC--CCC--
Q 016157 112 KVATFLNSLPSGSLVLDAGCGNGKYLG----LN-PDCFFVGCDISPSLIKICVDR-----GHEVLVADAVNLP--YRS-- 177 (394)
Q Consensus 112 ~l~~~l~~l~~g~~VLDvGCG~G~~l~----~~-~~~~v~gvD~S~~~l~~a~~~-----~i~~~~~D~~~lp--~~~-- 177 (394)
++...+. +.++..+||.+||.|..+. .. +...|+|+|.++.+++.|+++ ++.++++|+.++. ...
T Consensus 10 Evl~~L~-~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~~~ri~~i~~~f~~l~~~l~~~~ 88 (296)
T PRK00050 10 EVVDALA-IKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKPFGRFTLVHGNFSNLKEVLAEGL 88 (296)
T ss_pred HHHHhhC-CCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhccCCcEEEEeCCHHHHHHHHHcCC
Confidence 3444443 3577899999999999743 33 367999999999999999875 5788888887754 111
Q ss_pred CCccEEEehh
Q 016157 178 DFGDAAISIA 187 (394)
Q Consensus 178 ~~fD~Vi~~~ 187 (394)
.++|.|++..
T Consensus 89 ~~vDgIl~DL 98 (296)
T PRK00050 89 GKVDGILLDL 98 (296)
T ss_pred CccCEEEECC
Confidence 2688888754
|
|
| >PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0013 Score=64.83 Aligned_cols=92 Identities=17% Similarity=0.181 Sum_probs=65.4
Q ss_pred CCCCCEEEEEcCccCccccc--CCCcEEEEEeCCHHHHHH-HHHcCCeEEEeecCCCCCCCCCccEEEehhhhhhcCChh
Q 016157 120 LPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKI-CVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTES 196 (394)
Q Consensus 120 l~~g~~VLDvGCG~G~~l~~--~~~~~v~gvD~S~~~l~~-a~~~~i~~~~~D~~~lp~~~~~fD~Vi~~~vl~hl~~~~ 196 (394)
+.+|.++|||||++|.++.. ..+..|+|||.++ |-.. ....++.....|........+.+|+++|-.+..
T Consensus 209 ~~~g~~vlDLGAsPGGWT~~L~~rG~~V~AVD~g~-l~~~L~~~~~V~h~~~d~fr~~p~~~~vDwvVcDmve~------ 281 (357)
T PRK11760 209 LAPGMRAVDLGAAPGGWTYQLVRRGMFVTAVDNGP-MAQSLMDTGQVEHLRADGFKFRPPRKNVDWLVCDMVEK------ 281 (357)
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHcCCEEEEEechh-cCHhhhCCCCEEEEeccCcccCCCCCCCCEEEEecccC------
Confidence 56899999999999998653 5577999999654 3332 223368888888766543367899999976632
Q ss_pred HHHHHHHHHHhccccC--cEEEEEE
Q 016157 197 RRKKAIEELVRVVKKG--SLVLITV 219 (394)
Q Consensus 197 ~~~~~L~ei~r~LkpG--G~lli~~ 219 (394)
+.++.+-|.+.|..| ..+++..
T Consensus 282 -P~rva~lm~~Wl~~g~cr~aIfnL 305 (357)
T PRK11760 282 -PARVAELMAQWLVNGWCREAIFNL 305 (357)
T ss_pred -HHHHHHHHHHHHhcCcccEEEEEE
Confidence 677888888888766 3444443
|
|
| >KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0044 Score=57.86 Aligned_cols=98 Identities=18% Similarity=0.250 Sum_probs=72.7
Q ss_pred CCCCCCEEEEEcCccCccccc-----CCCcEEEEEeCCH----HHHHHHHHc-CCeEEEeecCCCC---CCCCCccEEEe
Q 016157 119 SLPSGSLVLDAGCGNGKYLGL-----NPDCFFVGCDISP----SLIKICVDR-GHEVLVADAVNLP---YRSDFGDAAIS 185 (394)
Q Consensus 119 ~l~~g~~VLDvGCG~G~~l~~-----~~~~~v~gvD~S~----~~l~~a~~~-~i~~~~~D~~~lp---~~~~~fD~Vi~ 185 (394)
+++||++||-+|.++|..... .|..-|++++.|. .++..|+++ |+--+.-|+.... ..-...|+|++
T Consensus 153 hikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkRtNiiPIiEDArhP~KYRmlVgmVDvIFa 232 (317)
T KOG1596|consen 153 HIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKRTNIIPIIEDARHPAKYRMLVGMVDVIFA 232 (317)
T ss_pred eecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhccCCceeeeccCCCchheeeeeeeEEEEec
Confidence 578999999999999997543 6778999999987 477888887 7766777877632 11246677776
Q ss_pred hhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 016157 186 IAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 221 (394)
Q Consensus 186 ~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~ 221 (394)
- ++.+++...+.-++.-.||+||.|+|+.-+
T Consensus 233 D-----vaqpdq~RivaLNA~~FLk~gGhfvisika 263 (317)
T KOG1596|consen 233 D-----VAQPDQARIVALNAQYFLKNGGHFVISIKA 263 (317)
T ss_pred c-----CCCchhhhhhhhhhhhhhccCCeEEEEEec
Confidence 3 344444455566778889999999999754
|
|
| >KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0051 Score=57.11 Aligned_cols=94 Identities=20% Similarity=0.192 Sum_probs=71.1
Q ss_pred CCCCCEEEEEcCccCccc-----ccCCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeecCC-CC-----CCCCCc
Q 016157 120 LPSGSLVLDAGCGNGKYL-----GLNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVN-LP-----YRSDFG 180 (394)
Q Consensus 120 l~~g~~VLDvGCG~G~~l-----~~~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~-lp-----~~~~~f 180 (394)
+-..+++||||.=||+-+ ....+..|+++|+++...+++.+. .++++++++.+ |+ ...++|
T Consensus 71 ~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tf 150 (237)
T KOG1663|consen 71 LLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTF 150 (237)
T ss_pred HhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCce
Confidence 334569999999898843 235678999999999988887654 47889998765 21 346899
Q ss_pred cEEEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 016157 181 DAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 181 D~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~ 219 (394)
|+++.-+ ..+ .-.....++.++||+||.+++..
T Consensus 151 DfaFvDa----dK~--nY~~y~e~~l~Llr~GGvi~~DN 183 (237)
T KOG1663|consen 151 DFAFVDA----DKD--NYSNYYERLLRLLRVGGVIVVDN 183 (237)
T ss_pred eEEEEcc----chH--HHHHHHHHHHhhcccccEEEEec
Confidence 9998743 222 24578899999999999999875
|
|
| >TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0022 Score=67.43 Aligned_cols=65 Identities=20% Similarity=0.292 Sum_probs=45.1
Q ss_pred CCEEEEEcCccCccccc----C------C--CcEEEEEeCCHHHHHHHHHc-------CCeEEEeecCCCC-----CCCC
Q 016157 123 GSLVLDAGCGNGKYLGL----N------P--DCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLP-----YRSD 178 (394)
Q Consensus 123 g~~VLDvGCG~G~~l~~----~------~--~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~lp-----~~~~ 178 (394)
..+|||.|||+|.++.. . . ...++|+|+++.++..|+.+ ++.+...|..... -..+
T Consensus 32 ~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~~~ 111 (524)
T TIGR02987 32 KTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESYLD 111 (524)
T ss_pred ceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeecccccccccccccccC
Confidence 45899999999998531 1 1 25799999999999988765 2345555543211 1125
Q ss_pred CccEEEehh
Q 016157 179 FGDAAISIA 187 (394)
Q Consensus 179 ~fD~Vi~~~ 187 (394)
.||+|+.+-
T Consensus 112 ~fD~IIgNP 120 (524)
T TIGR02987 112 LFDIVITNP 120 (524)
T ss_pred cccEEEeCC
Confidence 799999964
|
Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted. |
| >PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.00052 Score=62.23 Aligned_cols=99 Identities=21% Similarity=0.169 Sum_probs=66.0
Q ss_pred CCCCEEEEEcCccCccc-c-cCCCc-EEEEEeCCHHHHHHHHHc----C----CeEEEeecCC-CC---CCCCCccEEEe
Q 016157 121 PSGSLVLDAGCGNGKYL-G-LNPDC-FFVGCDISPSLIKICVDR----G----HEVLVADAVN-LP---YRSDFGDAAIS 185 (394)
Q Consensus 121 ~~g~~VLDvGCG~G~~l-~-~~~~~-~v~gvD~S~~~l~~a~~~----~----i~~~~~D~~~-lp---~~~~~fD~Vi~ 185 (394)
-+|.++||+-||+|.+. . ..+|+ .|+.+|.++..++..+++ + +.++.+|+.. ++ .....||+|++
T Consensus 41 ~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIfl 120 (183)
T PF03602_consen 41 LEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFL 120 (183)
T ss_dssp HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE
T ss_pred cCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEE
Confidence 36889999999999873 2 34554 899999999999998877 2 5778888643 22 24688999998
Q ss_pred hhhhhhcCChhHHHHHHHHHH--hccccCcEEEEEEcCc
Q 016157 186 IAVLHHLSTESRRKKAIEELV--RVVKKGSLVLITVWAV 222 (394)
Q Consensus 186 ~~vl~hl~~~~~~~~~L~ei~--r~LkpGG~lli~~~~~ 222 (394)
---...-.. ...++..+. .+|+++|.+++-....
T Consensus 121 DPPY~~~~~---~~~~l~~l~~~~~l~~~~~ii~E~~~~ 156 (183)
T PF03602_consen 121 DPPYAKGLY---YEELLELLAENNLLNEDGLIIIEHSKK 156 (183)
T ss_dssp --STTSCHH---HHHHHHHHHHTTSEEEEEEEEEEEETT
T ss_pred CCCcccchH---HHHHHHHHHHCCCCCCCEEEEEEecCC
Confidence 543221100 256777776 7899999998886443
|
They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A. |
| >COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.0054 Score=55.91 Aligned_cols=97 Identities=20% Similarity=0.226 Sum_probs=74.0
Q ss_pred CCCCCEEEEEcCccCccccc----CCCcEEEEEeCCHH----HHHHHHHc-CCeEEEeecCCCC---CCCCCccEEEehh
Q 016157 120 LPSGSLVLDAGCGNGKYLGL----NPDCFFVGCDISPS----LIKICVDR-GHEVLVADAVNLP---YRSDFGDAAISIA 187 (394)
Q Consensus 120 l~~g~~VLDvGCG~G~~l~~----~~~~~v~gvD~S~~----~l~~a~~~-~i~~~~~D~~~lp---~~~~~fD~Vi~~~ 187 (394)
+.+|++||-+|..+|..... .+...++|+++|+. ++..|+++ |+--+..|+.... .--+..|+|+.-
T Consensus 74 i~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R~Ni~PIL~DA~~P~~Y~~~Ve~VDviy~D- 152 (231)
T COG1889 74 IKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKRPNIIPILEDARKPEKYRHLVEKVDVIYQD- 152 (231)
T ss_pred cCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhCCCceeeecccCCcHHhhhhcccccEEEEe-
Confidence 56899999999999997543 44678999999996 56677777 6766788887532 123568888763
Q ss_pred hhhhcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 016157 188 VLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 221 (394)
Q Consensus 188 vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~ 221 (394)
+..+.+..-+..++...||+||.+++..-+
T Consensus 153 ----VAQp~Qa~I~~~Na~~FLk~~G~~~i~iKA 182 (231)
T COG1889 153 ----VAQPNQAEILADNAEFFLKKGGYVVIAIKA 182 (231)
T ss_pred ----cCCchHHHHHHHHHHHhcccCCeEEEEEEe
Confidence 445555788899999999999998888643
|
|
| >TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.0031 Score=63.45 Aligned_cols=90 Identities=18% Similarity=0.093 Sum_probs=68.7
Q ss_pred CCEEEEEcCccCccc-c---cCCC-cEEEEEeCCHHHHHHHHHc-------CCeEEEeecCCCCC-CCCCccEEEehhhh
Q 016157 123 GSLVLDAGCGNGKYL-G---LNPD-CFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPY-RSDFGDAAISIAVL 189 (394)
Q Consensus 123 g~~VLDvGCG~G~~l-~---~~~~-~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~lp~-~~~~fD~Vi~~~vl 189 (394)
+-+|||+.||+|... + ..++ ..|+++|+++.+++.++++ +++++.+|+..+-. ....||+|..-- .
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDP-f 123 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDP-F 123 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCC-C
Confidence 358999999999963 2 2224 4899999999999998876 25788888876432 235799998854 2
Q ss_pred hhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 016157 190 HHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 190 ~hl~~~~~~~~~L~ei~r~LkpGG~lli~~ 219 (394)
.. +..++..+.+.+++||.++++.
T Consensus 124 ---Gs---~~~fld~al~~~~~~glL~vTa 147 (374)
T TIGR00308 124 ---GT---PAPFVDSAIQASAERGLLLVTA 147 (374)
T ss_pred ---CC---cHHHHHHHHHhcccCCEEEEEe
Confidence 22 4579999999999999999983
|
This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes. |
| >COG4076 Predicted RNA methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.0017 Score=58.38 Aligned_cols=91 Identities=16% Similarity=0.258 Sum_probs=71.4
Q ss_pred CEEEEEcCccCcccc--cCCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeecCCCCCCCCCccEEEehhhhhhcCC
Q 016157 124 SLVLDAGCGNGKYLG--LNPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFGDAAISIAVLHHLST 194 (394)
Q Consensus 124 ~~VLDvGCG~G~~l~--~~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~lp~~~~~fD~Vi~~~vl~hl~~ 194 (394)
..+.|+|.|+|.+.- ....-+|++++..+...+.|.++ +++++.+|+.+..| +..|+|+|-..-..+-.
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~f--e~ADvvicEmlDTaLi~ 111 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHAAERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDF--ENADVVICEMLDTALIE 111 (252)
T ss_pred hceeeccCCcchHHHHHHhhhceEEEEecCcHHHHHhhhcCCCCCCcceEEEecccccccc--cccceeHHHHhhHHhhc
Confidence 589999999999753 22334899999999999999887 67999999999888 55799998655444444
Q ss_pred hhHHHHHHHHHHhccccCcEEEE
Q 016157 195 ESRRKKAIEELVRVVKKGSLVLI 217 (394)
Q Consensus 195 ~~~~~~~L~ei~r~LkpGG~lli 217 (394)
++ ...++..+...||-.|.++=
T Consensus 112 E~-qVpV~n~vleFLr~d~tiiP 133 (252)
T COG4076 112 EK-QVPVINAVLEFLRYDPTIIP 133 (252)
T ss_pred cc-ccHHHHHHHHHhhcCCcccc
Confidence 33 56788888889998888753
|
|
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.0078 Score=57.92 Aligned_cols=93 Identities=17% Similarity=0.217 Sum_probs=60.0
Q ss_pred CEEEEEcCccCcccc------cCCCcEEEEEeCCHHHHHHHHHc---------CCeEEEeecCCCCCCCCCccEEEehhh
Q 016157 124 SLVLDAGCGNGKYLG------LNPDCFFVGCDISPSLIKICVDR---------GHEVLVADAVNLPYRSDFGDAAISIAV 188 (394)
Q Consensus 124 ~~VLDvGCG~G~~l~------~~~~~~v~gvD~S~~~l~~a~~~---------~i~~~~~D~~~lp~~~~~fD~Vi~~~v 188 (394)
.+|+=||||+=-++. ..++..++++|+++.+++.+++- ++.|+.+|..+.+..-..||+|+..+.
T Consensus 122 ~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lAal 201 (276)
T PF03059_consen 122 SRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLAAL 201 (276)
T ss_dssp -EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-TT
T ss_pred ceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEhhh
Confidence 599999999866532 25677899999999999988653 578999999887654568999998775
Q ss_pred hhhcCChhHHHHHHHHHHhccccCcEEEEE
Q 016157 189 LHHLSTESRRKKAIEELVRVVKKGSLVLIT 218 (394)
Q Consensus 189 l~hl~~~~~~~~~L~ei~r~LkpGG~lli~ 218 (394)
..--.. ...++|..+.+.++||.++++-
T Consensus 202 Vg~~~e--~K~~Il~~l~~~m~~ga~l~~R 229 (276)
T PF03059_consen 202 VGMDAE--PKEEILEHLAKHMAPGARLVVR 229 (276)
T ss_dssp -S------SHHHHHHHHHHHS-TTSEEEEE
T ss_pred cccccc--hHHHHHHHHHhhCCCCcEEEEe
Confidence 542221 2689999999999999988876
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.0044 Score=60.04 Aligned_cols=113 Identities=19% Similarity=0.227 Sum_probs=78.6
Q ss_pred HHcCCCCCCEEEEEcCccCccc----cc-CCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeecCCCC--CCCCCcc
Q 016157 116 FLNSLPSGSLVLDAGCGNGKYL----GL-NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLP--YRSDFGD 181 (394)
Q Consensus 116 ~l~~l~~g~~VLDvGCG~G~~l----~~-~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~lp--~~~~~fD 181 (394)
.+....+|..|||+++|+|.=+ .. .....+++.|++..-+...+++ ++.....|..... .....||
T Consensus 79 ~~L~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~~~~fd 158 (283)
T PF01189_consen 79 LALDPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKPESKFD 158 (283)
T ss_dssp HHHTTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHHTTTEE
T ss_pred ccccccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccccccccccc
Confidence 3345678899999999999732 22 3367999999999887776654 3455666776652 2234699
Q ss_pred EEEe------hhhhhhcCChh-------------HHHHHHHHHHhcc----ccCcEEEEEEcCccchhhh
Q 016157 182 AAIS------IAVLHHLSTES-------------RRKKAIEELVRVV----KKGSLVLITVWAVEQEDKS 228 (394)
Q Consensus 182 ~Vi~------~~vl~hl~~~~-------------~~~~~L~ei~r~L----kpGG~lli~~~~~~~~~~~ 228 (394)
.|+. .+++..-++.. ...+.|+.+.+.+ ||||+++.++-+...+++.
T Consensus 159 ~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~~~eENE 228 (283)
T PF01189_consen 159 RVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSLSPEENE 228 (283)
T ss_dssp EEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHHHGGGTH
T ss_pred hhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccHHHHHHH
Confidence 9987 23333322211 1367899999999 9999999999877665543
|
In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A .... |
| >PF13679 Methyltransf_32: Methyltransferase domain | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.005 Score=53.20 Aligned_cols=93 Identities=23% Similarity=0.290 Sum_probs=60.0
Q ss_pred CCCCEEEEEcCccCcccc---c-----CCCcEEEEEeCCHHHHHHHHHc----------CCeEEEeecCCCCCCCCCccE
Q 016157 121 PSGSLVLDAGCGNGKYLG---L-----NPDCFFVGCDISPSLIKICVDR----------GHEVLVADAVNLPYRSDFGDA 182 (394)
Q Consensus 121 ~~g~~VLDvGCG~G~~l~---~-----~~~~~v~gvD~S~~~l~~a~~~----------~i~~~~~D~~~lp~~~~~fD~ 182 (394)
.+...|+|+|||.|++.. . .++..|+|+|.++.+++.+.++ .+.+..++....+. ....++
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 102 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADESS-SDPPDI 102 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhcc-cCCCeE
Confidence 566799999999999642 3 4788999999999998888776 23344444433221 445577
Q ss_pred EEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCc
Q 016157 183 AISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAV 222 (394)
Q Consensus 183 Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~ 222 (394)
++..+.---+. ..+|+...+ |+-.+++.++.-
T Consensus 103 ~vgLHaCG~Ls-----~~~l~~~~~---~~~~~l~~vpCC 134 (141)
T PF13679_consen 103 LVGLHACGDLS-----DRALRLFIR---PNARFLVLVPCC 134 (141)
T ss_pred EEEeecccchH-----HHHHHHHHH---cCCCEEEEcCCc
Confidence 77654433332 455665555 666666666543
|
|
| >KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.016 Score=55.06 Aligned_cols=103 Identities=18% Similarity=0.212 Sum_probs=79.4
Q ss_pred HHcCCCCCCEEEEEcCccCcccc-----cCCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeecCCCCCC--CCCc
Q 016157 116 FLNSLPSGSLVLDAGCGNGKYLG-----LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYR--SDFG 180 (394)
Q Consensus 116 ~l~~l~~g~~VLDvGCG~G~~l~-----~~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~lp~~--~~~f 180 (394)
.+..+.||++|||-|.|+|.+.- ..|..+++-.|+-....+.|++. ++++.+-|+...-|. +..+
T Consensus 99 ~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~~ks~~a 178 (314)
T KOG2915|consen 99 SMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFLIKSLKA 178 (314)
T ss_pred HHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCcccccccc
Confidence 33467899999999999999742 36778999999988777777654 578999999876553 5678
Q ss_pred cEEEehhhhhhcCChhHHHHHHHHHHhccccCc-EEEEEEcCccchh
Q 016157 181 DAAISIAVLHHLSTESRRKKAIEELVRVVKKGS-LVLITVWAVEQED 226 (394)
Q Consensus 181 D~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG-~lli~~~~~~~~~ 226 (394)
|+|+.- ++. +..++-.+..+||.+| +|+...+..||-.
T Consensus 179 DaVFLD-----lPa---Pw~AiPha~~~lk~~g~r~csFSPCIEQvq 217 (314)
T KOG2915|consen 179 DAVFLD-----LPA---PWEAIPHAAKILKDEGGRLCSFSPCIEQVQ 217 (314)
T ss_pred ceEEEc-----CCC---hhhhhhhhHHHhhhcCceEEeccHHHHHHH
Confidence 888763 455 7888899999999877 6666667777754
|
|
| >TIGR00006 S-adenosyl-methyltransferase MraW | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.016 Score=56.64 Aligned_cols=72 Identities=18% Similarity=0.158 Sum_probs=51.0
Q ss_pred HHHHHcCCCCCCEEEEEcCccCcccc----cCCCcEEEEEeCCHHHHHHHHHc------CCeEEEeecCCCC-----CCC
Q 016157 113 VATFLNSLPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR------GHEVLVADAVNLP-----YRS 177 (394)
Q Consensus 113 l~~~l~~l~~g~~VLDvGCG~G~~l~----~~~~~~v~gvD~S~~~l~~a~~~------~i~~~~~D~~~lp-----~~~ 177 (394)
+...+. +.+|..++|.=+|.|..+. ..+...|+|+|.++.+++.++++ .+.++++++.+++ ...
T Consensus 12 vl~~L~-~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~~R~~~i~~nF~~l~~~l~~~~~ 90 (305)
T TIGR00006 12 VVEGLN-IKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFEGRVVLIHDNFANFFEHLDELLV 90 (305)
T ss_pred HHHhcC-cCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcCCcEEEEeCCHHHHHHHHHhcCC
Confidence 344443 4577899999999998643 33458999999999999999875 4677777776543 122
Q ss_pred CCccEEEe
Q 016157 178 DFGDAAIS 185 (394)
Q Consensus 178 ~~fD~Vi~ 185 (394)
.++|.|+.
T Consensus 91 ~~vDgIl~ 98 (305)
T TIGR00006 91 TKIDGILV 98 (305)
T ss_pred CcccEEEE
Confidence 45777755
|
Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn. |
| >KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.011 Score=54.54 Aligned_cols=96 Identities=17% Similarity=0.121 Sum_probs=69.9
Q ss_pred CCCCEEEEEcCccCcc---cccCCCcEEEEEeCCHHHHHHHHHc------CCeEEEeecCC-C-CCCCCCccEEEehhhh
Q 016157 121 PSGSLVLDAGCGNGKY---LGLNPDCFFVGCDISPSLIKICVDR------GHEVLVADAVN-L-PYRSDFGDAAISIAVL 189 (394)
Q Consensus 121 ~~g~~VLDvGCG~G~~---l~~~~~~~v~gvD~S~~~l~~a~~~------~i~~~~~D~~~-l-p~~~~~fD~Vi~~~vl 189 (394)
..|++||.||-|-|.. ++..+-..=+-|+..+..++..+.. ++-...+--++ + .++++.||-|.--..-
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~ek~nViil~g~WeDvl~~L~d~~FDGI~yDTy~ 179 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWREKENVIILEGRWEDVLNTLPDKHFDGIYYDTYS 179 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccccccceEEEecchHhhhccccccCcceeEeechh
Confidence 5688999999999985 3344555667789999999998876 34444432222 1 1557889999876554
Q ss_pred hhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 016157 190 HHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 190 ~hl~~~~~~~~~L~ei~r~LkpGG~lli~~ 219 (394)
+|-.+ ...+.+.+.|+|||+|++-...
T Consensus 180 e~yEd---l~~~hqh~~rLLkP~gv~SyfN 206 (271)
T KOG1709|consen 180 ELYED---LRHFHQHVVRLLKPEGVFSYFN 206 (271)
T ss_pred hHHHH---HHHHHHHHhhhcCCCceEEEec
Confidence 55544 7888899999999999987664
|
|
| >PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.02 Score=54.06 Aligned_cols=101 Identities=23% Similarity=0.368 Sum_probs=63.7
Q ss_pred cCCCCCCEEEEEcCccCccc----ccCCCcEEEEEeCCHHHHHHHHHc------CCeEEEeecCCCCCCCCCccEEEehh
Q 016157 118 NSLPSGSLVLDAGCGNGKYL----GLNPDCFFVGCDISPSLIKICVDR------GHEVLVADAVNLPYRSDFGDAAISIA 187 (394)
Q Consensus 118 ~~l~~g~~VLDvGCG~G~~l----~~~~~~~v~gvD~S~~~l~~a~~~------~i~~~~~D~~~lp~~~~~fD~Vi~~~ 187 (394)
..+++..+|+|||||.=-++ ...++..++|+||+..+++..... ..++...|+..-+. ....|+.+..=
T Consensus 101 ~~~~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~~~~~v~Dl~~~~~-~~~~DlaLllK 179 (251)
T PF07091_consen 101 GRIPPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVPHDARVRDLLSDPP-KEPADLALLLK 179 (251)
T ss_dssp CCS---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-CEEEEEE-TTTSHT-TSEESEEEEET
T ss_pred hcCCCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCCcceeEeeeeccCC-CCCcchhhHHH
Confidence 34566789999999987653 346678999999999999887765 45778888877543 56789999988
Q ss_pred hhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCc
Q 016157 188 VLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAV 222 (394)
Q Consensus 188 vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~ 222 (394)
+++-+.... +...++ +...++-. .++++.+..
T Consensus 180 ~lp~le~q~-~g~g~~-ll~~~~~~-~~vVSfPtr 211 (251)
T PF07091_consen 180 TLPCLERQR-RGAGLE-LLDALRSP-HVVVSFPTR 211 (251)
T ss_dssp -HHHHHHHS-TTHHHH-HHHHSCES-EEEEEEES-
T ss_pred HHHHHHHHh-cchHHH-HHHHhCCC-eEEEecccc
Confidence 888775432 233333 33333322 666666543
|
|
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.0053 Score=63.02 Aligned_cols=96 Identities=17% Similarity=0.158 Sum_probs=70.2
Q ss_pred CEEEEEcCccCcccccCCCcEEEEEe----CCHHHHHHHHHcCCe-EEEeecCCCCCCCCCccEEEehhhhhhcCChhHH
Q 016157 124 SLVLDAGCGNGKYLGLNPDCFFVGCD----ISPSLIKICVDRGHE-VLVADAVNLPYRSDFGDAAISIAVLHHLSTESRR 198 (394)
Q Consensus 124 ~~VLDvGCG~G~~l~~~~~~~v~gvD----~S~~~l~~a~~~~i~-~~~~D~~~lp~~~~~fD~Vi~~~vl~hl~~~~~~ 198 (394)
..|+|...|.|.|+.+.....|+.+. ..+..+...-+||+- ..+.=.+.++.-+.+||++.+..++.+..+.-..
T Consensus 367 RNVMDMnAg~GGFAAAL~~~~VWVMNVVP~~~~ntL~vIydRGLIG~yhDWCE~fsTYPRTYDLlHA~~lfs~~~~rC~~ 446 (506)
T PF03141_consen 367 RNVMDMNAGYGGFAAALIDDPVWVMNVVPVSGPNTLPVIYDRGLIGVYHDWCEAFSTYPRTYDLLHADGLFSLYKDRCEM 446 (506)
T ss_pred eeeeeecccccHHHHHhccCCceEEEecccCCCCcchhhhhcccchhccchhhccCCCCcchhheehhhhhhhhcccccH
Confidence 57999999999997653332222222 344556666677643 2333345566667999999999999988776558
Q ss_pred HHHHHHHHhccccCcEEEEEE
Q 016157 199 KKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 199 ~~~L~ei~r~LkpGG~lli~~ 219 (394)
..+|-||-|+|||||.++|-.
T Consensus 447 ~~illEmDRILRP~G~~iiRD 467 (506)
T PF03141_consen 447 EDILLEMDRILRPGGWVIIRD 467 (506)
T ss_pred HHHHHHhHhhcCCCceEEEec
Confidence 899999999999999999974
|
; GO: 0008168 methyltransferase activity |
| >PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.017 Score=49.95 Aligned_cols=80 Identities=23% Similarity=0.210 Sum_probs=55.3
Q ss_pred EEEEEeCCHHHHHHHHHc--------CCeEEEeecCCCC--CCCCCccEEEehhhhhhcCC--------hhHHHHHHHHH
Q 016157 144 FFVGCDISPSLIKICVDR--------GHEVLVADAVNLP--YRSDFGDAAISIAVLHHLST--------ESRRKKAIEEL 205 (394)
Q Consensus 144 ~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~lp--~~~~~fD~Vi~~~vl~hl~~--------~~~~~~~L~ei 205 (394)
+|+|+|+-+.+++..+++ +++++..+-.++. .+.+.+|+++.+.. ++|. ++--..+|+.+
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLG--YLPggDk~i~T~~~TTl~Al~~a 78 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNLG--YLPGGDKSITTKPETTLKALEAA 78 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEES--B-CTS-TTSB--HHHHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEECC--cCCCCCCCCCcCcHHHHHHHHHH
Confidence 589999999999999887 3778888777765 22347898887543 3332 23367899999
Q ss_pred HhccccCcEEEEEEcCccch
Q 016157 206 VRVVKKGSLVLITVWAVEQE 225 (394)
Q Consensus 206 ~r~LkpGG~lli~~~~~~~~ 225 (394)
.++|+|||++.+..+..+..
T Consensus 79 l~lL~~gG~i~iv~Y~GH~g 98 (140)
T PF06962_consen 79 LELLKPGGIITIVVYPGHPG 98 (140)
T ss_dssp HHHEEEEEEEEEEE--STCH
T ss_pred HHhhccCCEEEEEEeCCCCC
Confidence 99999999999999876543
|
; PDB: 3EEY_H 3LBY_A 3MTI_A. |
| >COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.027 Score=56.32 Aligned_cols=103 Identities=25% Similarity=0.253 Sum_probs=71.6
Q ss_pred HcCCCCCCEEEEEcCccCcccc--------cCCCc-----------------------------------EEEEEeCCHH
Q 016157 117 LNSLPSGSLVLDAGCGNGKYLG--------LNPDC-----------------------------------FFVGCDISPS 153 (394)
Q Consensus 117 l~~l~~g~~VLDvGCG~G~~l~--------~~~~~-----------------------------------~v~gvD~S~~ 153 (394)
+....++..++|--||+|.++- ..||. .++|+|+++.
T Consensus 186 lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r 265 (381)
T COG0116 186 LAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPR 265 (381)
T ss_pred HcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHH
Confidence 3456677899999999999741 12211 3779999999
Q ss_pred HHHHHHHc--------CCeEEEeecCCCCCCCCCccEEEehhhh-hhcCChhH----HHHHHHHHHhccccCcEEEEEE
Q 016157 154 LIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISIAVL-HHLSTESR----RKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 154 ~l~~a~~~--------~i~~~~~D~~~lp~~~~~fD~Vi~~~vl-~hl~~~~~----~~~~L~ei~r~LkpGG~lli~~ 219 (394)
+++.|+.+ -|+|.++|+..++-+-+.+|+|||+--- .-+.+.+. -..+.+.+.+.++--++++++.
T Consensus 266 ~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~~ws~~v~tt 344 (381)
T COG0116 266 HIEGAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLAGWSRYVFTT 344 (381)
T ss_pred HHHHHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhcCCceEEEEc
Confidence 99999987 2789999999987544789999997421 11222211 2344556667777777777775
|
|
| >COG4798 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.02 Score=51.92 Aligned_cols=104 Identities=17% Similarity=0.182 Sum_probs=66.1
Q ss_pred cCCCCCCEEEEEcCccCccccc-----CCCcEEEEEeCCH----------HHHHHHHHc---CCeEEEeecCCCCCCCCC
Q 016157 118 NSLPSGSLVLDAGCGNGKYLGL-----NPDCFFVGCDISP----------SLIKICVDR---GHEVLVADAVNLPYRSDF 179 (394)
Q Consensus 118 ~~l~~g~~VLDvGCG~G~~l~~-----~~~~~v~gvD~S~----------~~l~~a~~~---~i~~~~~D~~~lp~~~~~ 179 (394)
..+++|.+|+|+=-|.|.+.+. .+...|++.=..+ .+-..+++. +.+.+-.+...++ ..+.
T Consensus 44 aGlkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~-~pq~ 122 (238)
T COG4798 44 AGLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALG-APQK 122 (238)
T ss_pred eccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccC-CCCc
Confidence 3578999999999999998764 4444666653332 233333333 5555555555555 3445
Q ss_pred ccEEEehhhhhhcCC----hhHHHHHHHHHHhccccCcEEEEEEcCc
Q 016157 180 GDAAISIAVLHHLST----ESRRKKAIEELVRVVKKGSLVLITVWAV 222 (394)
Q Consensus 180 fD~Vi~~~vl~hl~~----~~~~~~~L~ei~r~LkpGG~lli~~~~~ 222 (394)
.|++.....-|-+.. ..-...+..++++.|||||.+++.....
T Consensus 123 ~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~a 169 (238)
T COG4798 123 LDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHRA 169 (238)
T ss_pred ccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEeccc
Confidence 566655333222111 1226789999999999999999987543
|
|
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.017 Score=56.99 Aligned_cols=97 Identities=22% Similarity=0.245 Sum_probs=72.5
Q ss_pred CCCCCCEEEEEcCccCcccc---cCCC-cEEEEEeCCHHHHHHHHHc--------------CCeEEEeecCCCC-CCCCC
Q 016157 119 SLPSGSLVLDAGCGNGKYLG---LNPD-CFFVGCDISPSLIKICVDR--------------GHEVLVADAVNLP-YRSDF 179 (394)
Q Consensus 119 ~l~~g~~VLDvGCG~G~~l~---~~~~-~~v~gvD~S~~~l~~a~~~--------------~i~~~~~D~~~lp-~~~~~ 179 (394)
.++...++|-+|.|.|.-++ ..|+ .+++-+|+.++|++.+++. .+.++..|+.++- -..+.
T Consensus 286 ~~~~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~ 365 (508)
T COG4262 286 SVRGARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADM 365 (508)
T ss_pred cccccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhccc
Confidence 34556799999999998754 3664 4899999999999999854 3678888887743 23468
Q ss_pred ccEEEeh------hhhhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 016157 180 GDAAISI------AVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 180 fD~Vi~~------~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~ 219 (394)
||+||.- .++--+-+ .++-.-+.|.|+++|.+++..
T Consensus 366 fD~vIVDl~DP~tps~~rlYS----~eFY~ll~~~l~e~Gl~VvQa 407 (508)
T COG4262 366 FDVVIVDLPDPSTPSIGRLYS----VEFYRLLSRHLAETGLMVVQA 407 (508)
T ss_pred ccEEEEeCCCCCCcchhhhhh----HHHHHHHHHhcCcCceEEEec
Confidence 9999873 22322322 567778899999999999985
|
|
| >PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.026 Score=53.94 Aligned_cols=86 Identities=19% Similarity=0.250 Sum_probs=61.7
Q ss_pred CCCCCEEEEEcCccCccccc--CCCcEEEEEeCCHHHHHHHHHc-----CCeEEEeecCCCCCCC---CCccEEEehhhh
Q 016157 120 LPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR-----GHEVLVADAVNLPYRS---DFGDAAISIAVL 189 (394)
Q Consensus 120 l~~g~~VLDvGCG~G~~l~~--~~~~~v~gvD~S~~~l~~a~~~-----~i~~~~~D~~~lp~~~---~~fD~Vi~~~vl 189 (394)
+.++..|||||.|+|.++.. ..+..++++|+++.+++..+++ +++++.+|+..+.... +....|+++--.
T Consensus 28 ~~~~~~VlEiGpG~G~lT~~L~~~~~~v~~vE~d~~~~~~L~~~~~~~~~~~vi~~D~l~~~~~~~~~~~~~~vv~NlPy 107 (262)
T PF00398_consen 28 LSEGDTVLEIGPGPGALTRELLKRGKRVIAVEIDPDLAKHLKERFASNPNVEVINGDFLKWDLYDLLKNQPLLVVGNLPY 107 (262)
T ss_dssp CGTTSEEEEESSTTSCCHHHHHHHSSEEEEEESSHHHHHHHHHHCTTCSSEEEEES-TTTSCGGGHCSSSEEEEEEEETG
T ss_pred CCCCCEEEEeCCCCccchhhHhcccCcceeecCcHhHHHHHHHHhhhcccceeeecchhccccHHhhcCCceEEEEEecc
Confidence 44788999999999998653 2337999999999999999884 6899999999987654 344566665332
Q ss_pred hhcCChhHHHHHHHHHHhcccc
Q 016157 190 HHLSTESRRKKAIEELVRVVKK 211 (394)
Q Consensus 190 ~hl~~~~~~~~~L~ei~r~Lkp 211 (394)
++ -..+|..+...-+.
T Consensus 108 -~i-----s~~il~~ll~~~~~ 123 (262)
T PF00398_consen 108 -NI-----SSPILRKLLELYRF 123 (262)
T ss_dssp -TG-----HHHHHHHHHHHGGG
T ss_pred -cc-----hHHHHHHHhhcccc
Confidence 33 24566666664344
|
g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A .... |
| >KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.011 Score=57.15 Aligned_cols=127 Identities=13% Similarity=0.135 Sum_probs=80.0
Q ss_pred HHHHHHHhhccccccccccchHHHHHHHcCCCC-------CCEEEEEcCccCcccc--cCCCcEEEEEeCCHHHHH----
Q 016157 90 YVHRVYDAIAPHFSSTRFAKWPKVATFLNSLPS-------GSLVLDAGCGNGKYLG--LNPDCFFVGCDISPSLIK---- 156 (394)
Q Consensus 90 ~v~~~Yd~~a~~y~~~~~~~~~~l~~~l~~l~~-------g~~VLDvGCG~G~~l~--~~~~~~v~gvD~S~~~l~---- 156 (394)
.+.+++.++...+...|...++.+...+..+-| ..+||--|||.|+++- .--|..+-|-++|--|+-
T Consensus 111 ~l~~i~RdwssE~~~ERd~~ykpii~~l~~lfp~~~~~r~ki~iLvPGaGlGRLa~dla~~G~~~qGNEfSy~Mli~S~F 190 (369)
T KOG2798|consen 111 TLKQICRDWSSEGQRERDQLYKPIIEELNSLFPSRGKERTKIRILVPGAGLGRLAYDLACLGFKCQGNEFSYFMLICSSF 190 (369)
T ss_pred HHHHHHHHhhhccchhhhhhhhhHHHHHHhhCCCccccccCceEEecCCCchhHHHHHHHhcccccccHHHHHHHHHHHH
Confidence 566666667776667777777777777765433 3589999999999752 122334444455544431
Q ss_pred ---HHHHc----------------------------------------CCeEEEeecCCCC---CCCCCccEEEehhhhh
Q 016157 157 ---ICVDR----------------------------------------GHEVLVADAVNLP---YRSDFGDAAISIAVLH 190 (394)
Q Consensus 157 ---~a~~~----------------------------------------~i~~~~~D~~~lp---~~~~~fD~Vi~~~vl~ 190 (394)
.++.. ....-.||+.+.- -..+.||+|+.++.|.
T Consensus 191 iLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFID 270 (369)
T KOG2798|consen 191 ILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPDIHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFID 270 (369)
T ss_pred HHHhhccCCcEEEEeeeeccccccccccccccccCccccccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEee
Confidence 11111 1222345555421 1224799999987665
Q ss_pred hcCChhHHHHHHHHHHhccccCcEEEEEE
Q 016157 191 HLSTESRRKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 191 hl~~~~~~~~~L~ei~r~LkpGG~lli~~ 219 (394)
-..+ ....|..|..+|||||..+=..
T Consensus 271 Ta~N---ileYi~tI~~iLk~GGvWiNlG 296 (369)
T KOG2798|consen 271 TAHN---ILEYIDTIYKILKPGGVWINLG 296 (369)
T ss_pred chHH---HHHHHHHHHHhccCCcEEEecc
Confidence 5444 8899999999999999876543
|
|
| >COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.039 Score=49.98 Aligned_cols=96 Identities=21% Similarity=0.139 Sum_probs=67.2
Q ss_pred CCCEEEEEcCccCccc-c-cCCCc-EEEEEeCCHHHHHHHHHc--------CCeEEEeecCCC-CCCC--CCccEEEehh
Q 016157 122 SGSLVLDAGCGNGKYL-G-LNPDC-FFVGCDISPSLIKICVDR--------GHEVLVADAVNL-PYRS--DFGDAAISIA 187 (394)
Q Consensus 122 ~g~~VLDvGCG~G~~l-~-~~~~~-~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~l-p~~~--~~fD~Vi~~~ 187 (394)
.|.++||+=+|+|.+. . +.+|+ .++.+|.+...+...+++ ...++..|+... +... +.||+|+.--
T Consensus 43 ~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVflDP 122 (187)
T COG0742 43 EGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLVFLDP 122 (187)
T ss_pred CCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCCCcccEEEeCC
Confidence 5889999999999973 2 34544 899999999999998887 357788888743 1122 2599999865
Q ss_pred hhhh-cCChhHHHHHHHH--HHhccccCcEEEEEEc
Q 016157 188 VLHH-LSTESRRKKAIEE--LVRVVKKGSLVLITVW 220 (394)
Q Consensus 188 vl~h-l~~~~~~~~~L~e--i~r~LkpGG~lli~~~ 220 (394)
-.+. +.+ ....+.. -...|+|+|.+++-.-
T Consensus 123 Py~~~l~~---~~~~~~~~~~~~~L~~~~~iv~E~~ 155 (187)
T COG0742 123 PYAKGLLD---KELALLLLEENGWLKPGALIVVEHD 155 (187)
T ss_pred CCccchhh---HHHHHHHHHhcCCcCCCcEEEEEeC
Confidence 5441 111 2333333 4577999999998753
|
|
| >PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.026 Score=52.16 Aligned_cols=89 Identities=15% Similarity=0.121 Sum_probs=57.9
Q ss_pred EEEEcCccCcccc----cCCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeecCCCCCCCCCccEEEehhhhhhcC
Q 016157 126 VLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISIAVLHHLS 193 (394)
Q Consensus 126 VLDvGCG~G~~l~----~~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~lp~~~~~fD~Vi~~~vl~hl~ 193 (394)
|.||||-.|.+.. ...--.++++|+++..++.|++. .+++..+|.+..--+.+..|.|+..++=-.+
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~~e~~d~ivIAGMGG~l- 79 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKPGEDVDTIVIAGMGGEL- 79 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--GGG---EEEEEEE-HHH-
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCCCCCCCEEEEecCCHHH-
Confidence 6899999998632 23334899999999999999887 4789999977632222336888876653333
Q ss_pred ChhHHHHHHHHHHhccccCcEEEEEE
Q 016157 194 TESRRKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 194 ~~~~~~~~L~ei~r~LkpGG~lli~~ 219 (394)
....|.+....++..-.|++.-
T Consensus 80 ----I~~ILe~~~~~~~~~~~lILqP 101 (205)
T PF04816_consen 80 ----IIEILEAGPEKLSSAKRLILQP 101 (205)
T ss_dssp ----HHHHHHHTGGGGTT--EEEEEE
T ss_pred ----HHHHHHhhHHHhccCCeEEEeC
Confidence 5677887777777666776653
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B. |
| >PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ] | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.0054 Score=54.46 Aligned_cols=61 Identities=23% Similarity=0.230 Sum_probs=41.6
Q ss_pred EEEEEcCccCccccc--CCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeecCCCC--CCCCC-ccEEEe
Q 016157 125 LVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLP--YRSDF-GDAAIS 185 (394)
Q Consensus 125 ~VLDvGCG~G~~l~~--~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~lp--~~~~~-fD~Vi~ 185 (394)
.|+|+.||.|..+-. .....|+++|+++..++.|+.+ +++++++|+.++. +.... ||+|++
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFl 75 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTFDRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFL 75 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT-EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE
T ss_pred EEEEeccCcCHHHHHHHHhCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEE
Confidence 699999999986432 2345899999999999999987 4799999988753 22122 788886
|
Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A. |
| >PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.0039 Score=50.71 Aligned_cols=89 Identities=15% Similarity=0.118 Sum_probs=41.8
Q ss_pred EEEcCccCcccc----c-CCC--cEEEEEeCCH---HHHHHHHHc----CCeEEEeecCCC-C-CCCCCccEEEehhhhh
Q 016157 127 LDAGCGNGKYLG----L-NPD--CFFVGCDISP---SLIKICVDR----GHEVLVADAVNL-P-YRSDFGDAAISIAVLH 190 (394)
Q Consensus 127 LDvGCG~G~~l~----~-~~~--~~v~gvD~S~---~~l~~a~~~----~i~~~~~D~~~l-p-~~~~~fD~Vi~~~vl~ 190 (394)
||||+..|..+. . .+. ..++++|..+ ...+..++. +++++.++..+. + +..++||+++.-+.
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg~-- 78 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDGD-- 78 (106)
T ss_dssp --------------------------EEEESS------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES---
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECCC--
Confidence 689988888532 1 222 3799999999 444555432 578899988653 1 33578999998653
Q ss_pred hcCChhHHHHHHHHHHhccccCcEEEEEE
Q 016157 191 HLSTESRRKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 191 hl~~~~~~~~~L~ei~r~LkpGG~lli~~ 219 (394)
|- .+.....+..+.+.|+|||.+++-.
T Consensus 79 H~--~~~~~~dl~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 79 HS--YEAVLRDLENALPRLAPGGVIVFDD 105 (106)
T ss_dssp ----HHHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred CC--HHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 21 1226778999999999999998754
|
|
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.037 Score=54.73 Aligned_cols=93 Identities=14% Similarity=0.217 Sum_probs=67.0
Q ss_pred cCCCCCCEEEEEcCccCcc--c---ccCCCcEEEEEeCCHHHHHHHHHcCCeEEEeecC--CCCCCCCCccEEEehhhhh
Q 016157 118 NSLPSGSLVLDAGCGNGKY--L---GLNPDCFFVGCDISPSLIKICVDRGHEVLVADAV--NLPYRSDFGDAAISIAVLH 190 (394)
Q Consensus 118 ~~l~~g~~VLDvGCG~G~~--l---~~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~--~lp~~~~~fD~Vi~~~vl~ 190 (394)
..++||.+|+=+|+| |.- + ...-+++|+++|+|++-++.|++.+.+.+..... ....-.+.||+|+.... .
T Consensus 162 ~~~~pG~~V~I~G~G-GlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv~-~ 239 (339)
T COG1064 162 ANVKPGKWVAVVGAG-GLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTVG-P 239 (339)
T ss_pred cCCCCCCEEEEECCc-HHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECCC-h
Confidence 467899999999999 752 1 1234599999999999999999997655443221 11111234999998765 2
Q ss_pred hcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 016157 191 HLSTESRRKKAIEELVRVVKKGSLVLITVWA 221 (394)
Q Consensus 191 hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~ 221 (394)
..+....+.||+||++++.-..
T Consensus 240 ---------~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 240 ---------ATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred ---------hhHHHHHHHHhcCCEEEEECCC
Confidence 4567778999999999998644
|
|
| >PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria | Back alignment and domain information |
|---|
Probab=95.45 E-value=0.053 Score=53.04 Aligned_cols=74 Identities=20% Similarity=0.249 Sum_probs=48.0
Q ss_pred HHHHHHHcCCCCCCEEEEEcCccCccc----ccCCCcEEEEEeCCHHHHHHHHHc------CCeEEEeecCCCC-----C
Q 016157 111 PKVATFLNSLPSGSLVLDAGCGNGKYL----GLNPDCFFVGCDISPSLIKICVDR------GHEVLVADAVNLP-----Y 175 (394)
Q Consensus 111 ~~l~~~l~~l~~g~~VLDvGCG~G~~l----~~~~~~~v~gvD~S~~~l~~a~~~------~i~~~~~D~~~lp-----~ 175 (394)
.++...+. ..++...+|.=-|.|..+ ...++..++|+|..+.+++.|+++ ++.++++++.++. .
T Consensus 10 ~Evl~~L~-~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~~~r~~~~~~~F~~l~~~l~~~ 88 (310)
T PF01795_consen 10 KEVLEALN-PKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKFDDRFIFIHGNFSNLDEYLKEL 88 (310)
T ss_dssp HHHHHHHT---TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCCCTTEEEEES-GGGHHHHHHHT
T ss_pred HHHHHhhC-cCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhccceEEEEeccHHHHHHHHHHc
Confidence 45555555 456779999999999864 345669999999999999999876 4677888877653 2
Q ss_pred -CCCCccEEEe
Q 016157 176 -RSDFGDAAIS 185 (394)
Q Consensus 176 -~~~~fD~Vi~ 185 (394)
....+|.|+.
T Consensus 89 ~~~~~~dgiL~ 99 (310)
T PF01795_consen 89 NGINKVDGILF 99 (310)
T ss_dssp TTTS-EEEEEE
T ss_pred cCCCccCEEEE
Confidence 2346777765
|
The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A. |
| >COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.03 Score=55.09 Aligned_cols=102 Identities=25% Similarity=0.277 Sum_probs=62.0
Q ss_pred CCCCCCEEEEEcCccCccccc----CCCc-EEEEEeCCHHHHHHHHHc--CC-----eE----EEeecCCCCCCCCCccE
Q 016157 119 SLPSGSLVLDAGCGNGKYLGL----NPDC-FFVGCDISPSLIKICVDR--GH-----EV----LVADAVNLPYRSDFGDA 182 (394)
Q Consensus 119 ~l~~g~~VLDvGCG~G~~l~~----~~~~-~v~gvD~S~~~l~~a~~~--~i-----~~----~~~D~~~lp~~~~~fD~ 182 (394)
...|. +|||+|.|+|.-+.+ .|.. .++-++.|+.+-++...- ++ .+ ++.|-..+|. .+.|++
T Consensus 111 dfapq-siLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~-ad~ytl 188 (484)
T COG5459 111 DFAPQ-SILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPA-ADLYTL 188 (484)
T ss_pred CcCcc-hhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCCc-cceeeh
Confidence 34444 699999999986532 3443 566677887765554332 11 22 2233333433 234555
Q ss_pred EEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCc
Q 016157 183 AISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAV 222 (394)
Q Consensus 183 Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~ 222 (394)
++...-|-|...+..+...|+.+..++.|||.|+|...+.
T Consensus 189 ~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGt 228 (484)
T COG5459 189 AIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGT 228 (484)
T ss_pred hhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCC
Confidence 5555444444443335568999999999999999997554
|
|
| >COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.33 E-value=0.087 Score=49.38 Aligned_cols=93 Identities=16% Similarity=0.234 Sum_probs=66.0
Q ss_pred CCCCCEEEEEcCccCccccc--CCCc-EEEEEeCCHHHHHHHHHcCCeE---EEeecCCCC---CCCCCccEEEehhhhh
Q 016157 120 LPSGSLVLDAGCGNGKYLGL--NPDC-FFVGCDISPSLIKICVDRGHEV---LVADAVNLP---YRSDFGDAAISIAVLH 190 (394)
Q Consensus 120 l~~g~~VLDvGCG~G~~l~~--~~~~-~v~gvD~S~~~l~~a~~~~i~~---~~~D~~~lp---~~~~~fD~Vi~~~vl~ 190 (394)
..+|..+||||+.||.|+.. ..++ .|+|+|.....+..--+.+.++ ...|+..+. + .+..|++++--.+-
T Consensus 77 ~~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kLR~d~rV~~~E~tN~r~l~~~~~-~~~~d~~v~DvSFI 155 (245)
T COG1189 77 DVKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKLRNDPRVIVLERTNVRYLTPEDF-TEKPDLIVIDVSFI 155 (245)
T ss_pred CCCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhHhcCCcEEEEecCChhhCCHHHc-ccCCCeEEEEeehh
Confidence 35788999999999999753 4444 8999999987766544443333 334444443 2 23668888865443
Q ss_pred hcCChhHHHHHHHHHHhccccCcEEEEEE
Q 016157 191 HLSTESRRKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 191 hl~~~~~~~~~L~ei~r~LkpGG~lli~~ 219 (394)
- ...+|..+..+|+|+|.++..+
T Consensus 156 S------L~~iLp~l~~l~~~~~~~v~Lv 178 (245)
T COG1189 156 S------LKLILPALLLLLKDGGDLVLLV 178 (245)
T ss_pred h------HHHHHHHHHHhcCCCceEEEEe
Confidence 2 5789999999999999988876
|
|
| >KOG3115 consensus Methyltransferase-like protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.28 E-value=0.061 Score=49.19 Aligned_cols=99 Identities=20% Similarity=0.341 Sum_probs=58.2
Q ss_pred CCCCEEEEEcCccCcccc----cCCCcEEEEEeCCHHHHHHHHHc--------------CCeEEEeecCC-CC--CCCCC
Q 016157 121 PSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR--------------GHEVLVADAVN-LP--YRSDF 179 (394)
Q Consensus 121 ~~g~~VLDvGCG~G~~l~----~~~~~~v~gvD~S~~~l~~a~~~--------------~i~~~~~D~~~-lp--~~~~~ 179 (394)
....-+.|||||-|.++- ..|.--++|++|-...-++.+++ ++.+...++.. +| |..++
T Consensus 59 ~~kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgq 138 (249)
T KOG3115|consen 59 NKKVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQ 138 (249)
T ss_pred cccceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhcc
Confidence 344578999999998753 47888999999987776665554 34445444432 22 11121
Q ss_pred ccEEEehhhhhhcCChhH-----HHHHHHHHHhccccCcEEEEEE
Q 016157 180 GDAAISIAVLHHLSTESR-----RKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 180 fD~Vi~~~vl~hl~~~~~-----~~~~L~ei~r~LkpGG~lli~~ 219 (394)
.+=.+...---|+..... -...+.+..-+|++||.++..+
T Consensus 139 Lskmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytit 183 (249)
T KOG3115|consen 139 LSKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTIT 183 (249)
T ss_pred cccceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEe
Confidence 111111111112211000 2457888889999999998876
|
|
| >KOG3201 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.22 E-value=0.0087 Score=52.71 Aligned_cols=100 Identities=11% Similarity=0.076 Sum_probs=68.0
Q ss_pred CCCEEEEEcCccCccc----c-cCCCcEEEEEeCCHHHHHHHHHc---C--CeEEEeecCCC-------CCCCCCccEEE
Q 016157 122 SGSLVLDAGCGNGKYL----G-LNPDCFFVGCDISPSLIKICVDR---G--HEVLVADAVNL-------PYRSDFGDAAI 184 (394)
Q Consensus 122 ~g~~VLDvGCG~G~~l----~-~~~~~~v~gvD~S~~~l~~a~~~---~--i~~~~~D~~~l-------p~~~~~fD~Vi 184 (394)
.|.+|||+|.|--.++ . ..+...|.-.|-+...++-.++- + ...-.+-+..+ .....+||+|+
T Consensus 29 rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiIl 108 (201)
T KOG3201|consen 29 RGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDIIL 108 (201)
T ss_pred hHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEEE
Confidence 3578999999854332 2 36778999999999888776653 2 11111111111 12346899999
Q ss_pred ehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCccc
Q 016157 185 SIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQ 224 (394)
Q Consensus 185 ~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~~~ 224 (394)
+..++..- +.+..+++.|.++|+|.|+.++..+-..+
T Consensus 109 aADClFfd---E~h~sLvdtIk~lL~p~g~Al~fsPRRg~ 145 (201)
T KOG3201|consen 109 AADCLFFD---EHHESLVDTIKSLLRPSGRALLFSPRRGQ 145 (201)
T ss_pred eccchhHH---HHHHHHHHHHHHHhCcccceeEecCcccc
Confidence 99877543 33788999999999999998887765444
|
|
| >PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2 | Back alignment and domain information |
|---|
Probab=95.11 E-value=0.051 Score=54.33 Aligned_cols=49 Identities=22% Similarity=0.304 Sum_probs=36.3
Q ss_pred EEEEEcCccCccccc--CCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeecCCC
Q 016157 125 LVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNL 173 (394)
Q Consensus 125 ~VLDvGCG~G~~l~~--~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~l 173 (394)
.|||+-||.|.+.-. .....|+|+|+++.+++.|+++ +++|+.+++.++
T Consensus 199 ~vlDlycG~G~fsl~la~~~~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~~~~ 256 (352)
T PF05958_consen 199 DVLDLYCGVGTFSLPLAKKAKKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDAEDF 256 (352)
T ss_dssp EEEEES-TTTCCHHHHHCCSSEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--SHHC
T ss_pred cEEEEeecCCHHHHHHHhhCCeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeeccch
Confidence 899999999998532 3445899999999999999876 578888876543
|
1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B. |
| >TIGR01444 fkbM_fam methyltransferase, FkbM family | Back alignment and domain information |
|---|
Probab=94.95 E-value=0.034 Score=47.48 Aligned_cols=37 Identities=16% Similarity=0.250 Sum_probs=30.7
Q ss_pred EEEEEcCccCccc----ccCCCcEEEEEeCCHHHHHHHHHc
Q 016157 125 LVLDAGCGNGKYL----GLNPDCFFVGCDISPSLIKICVDR 161 (394)
Q Consensus 125 ~VLDvGCG~G~~l----~~~~~~~v~gvD~S~~~l~~a~~~ 161 (394)
.+||||||.|.+. ...+..+++++|+++.+.+.++++
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~ 41 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEEN 41 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHH
Confidence 4899999999874 235666999999999999888775
|
Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548. |
| >KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=94.93 E-value=0.16 Score=49.63 Aligned_cols=100 Identities=15% Similarity=0.124 Sum_probs=72.6
Q ss_pred HcCCCCCCEEEEEcCccCc-----ccccCCCcEEEEEeCCHHHHHHHHHcCCeEEEeecCCC-----------CCCCCCc
Q 016157 117 LNSLPSGSLVLDAGCGNGK-----YLGLNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNL-----------PYRSDFG 180 (394)
Q Consensus 117 l~~l~~g~~VLDvGCG~G~-----~l~~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~l-----------p~~~~~f 180 (394)
...+++|++||=+|+|+=. .++...-.+|+.+|+++.-++.|++.|.+.+.-+.... .+....+
T Consensus 164 ~~~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~~Ga~~~~~~~~~~~~~~~~~~v~~~~g~~~~ 243 (354)
T KOG0024|consen 164 RAGVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKKFGATVTDPSSHKSSPQELAELVEKALGKKQP 243 (354)
T ss_pred hcCcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHHhCCeEEeeccccccHHHHHHHHHhhccccCC
Confidence 3457899999999999633 23345556999999999999999998876654443321 1223458
Q ss_pred cEEEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCccch
Q 016157 181 DAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQE 225 (394)
Q Consensus 181 D~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~~~~ 225 (394)
|+.+....+ ...++.....||+||.+++..|..+..
T Consensus 244 d~~~dCsG~---------~~~~~aai~a~r~gGt~vlvg~g~~~~ 279 (354)
T KOG0024|consen 244 DVTFDCSGA---------EVTIRAAIKATRSGGTVVLVGMGAEEI 279 (354)
T ss_pred CeEEEccCc---------hHHHHHHHHHhccCCEEEEeccCCCcc
Confidence 998887653 456667788999999988888876543
|
|
| >COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=94.93 E-value=0.059 Score=55.32 Aligned_cols=93 Identities=20% Similarity=0.290 Sum_probs=66.4
Q ss_pred CCCCEEEEEcCccCcccc-c-CCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeecCCCCCC---CCCccEEEehhh
Q 016157 121 PSGSLVLDAGCGNGKYLG-L-NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYR---SDFGDAAISIAV 188 (394)
Q Consensus 121 ~~g~~VLDvGCG~G~~l~-~-~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~lp~~---~~~fD~Vi~~~v 188 (394)
.++.++||+=||.|.+.- . ....+|+|+|+++++++.|+++ |+.|..+++++.... ...+|.|+.---
T Consensus 292 ~~~~~vlDlYCGvG~f~l~lA~~~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~~~~~~d~VvvDPP 371 (432)
T COG2265 292 AGGERVLDLYCGVGTFGLPLAKRVKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWWEGYKPDVVVVDPP 371 (432)
T ss_pred cCCCEEEEeccCCChhhhhhcccCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhccccCCCCEEEECCC
Confidence 456799999999999854 2 3556999999999999999887 578899999886533 247899987321
Q ss_pred hhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 016157 189 LHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 189 l~hl~~~~~~~~~L~ei~r~LkpGG~lli~~ 219 (394)
=.-+ -..+++.+.+ ++|-..++++.
T Consensus 372 R~G~-----~~~~lk~l~~-~~p~~IvYVSC 396 (432)
T COG2265 372 RAGA-----DREVLKQLAK-LKPKRIVYVSC 396 (432)
T ss_pred CCCC-----CHHHHHHHHh-cCCCcEEEEeC
Confidence 0000 1355555555 56777777775
|
|
| >KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=94.86 E-value=0.041 Score=56.67 Aligned_cols=55 Identities=25% Similarity=0.397 Sum_probs=44.6
Q ss_pred cCCCCCCEEEEEcCccCcccc-c-CCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeecCC
Q 016157 118 NSLPSGSLVLDAGCGNGKYLG-L-NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVN 172 (394)
Q Consensus 118 ~~l~~g~~VLDvGCG~G~~l~-~-~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~ 172 (394)
..++.+..+||+-||||.+-. . .+-..|+|+++++..++-|+++ |.+|+++-+++
T Consensus 379 ~~l~~~k~llDv~CGTG~iglala~~~~~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gqaE~ 442 (534)
T KOG2187|consen 379 AGLPADKTLLDVCCGTGTIGLALARGVKRVIGVEISPDAVEDAEKNAQINGISNATFIVGQAED 442 (534)
T ss_pred hCCCCCcEEEEEeecCCceehhhhccccceeeeecChhhcchhhhcchhcCccceeeeecchhh
Confidence 357888999999999999743 2 3445899999999999999887 57899995555
|
|
| >PLN02668 indole-3-acetate carboxyl methyltransferase | Back alignment and domain information |
|---|
Probab=94.66 E-value=0.071 Score=53.77 Aligned_cols=56 Identities=14% Similarity=0.091 Sum_probs=39.9
Q ss_pred ecCCCCCCCCCccEEEehhhhhhcCChh-----------------------------------HHHHHHHHHHhccccCc
Q 016157 169 DAVNLPYRSDFGDAAISIAVLHHLSTES-----------------------------------RRKKAIEELVRVVKKGS 213 (394)
Q Consensus 169 D~~~lp~~~~~fD~Vi~~~vl~hl~~~~-----------------------------------~~~~~L~ei~r~LkpGG 213 (394)
.+..--|+.++.+++++.+.+||++... ....+|+.=++-|.|||
T Consensus 152 SFY~RLfP~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~Ra~ELvpGG 231 (386)
T PLN02668 152 SFYRRLFPARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRARAQEMKRGG 231 (386)
T ss_pred cccccccCCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCc
Confidence 3334447899999999999999987410 02334444556689999
Q ss_pred EEEEEEcCccc
Q 016157 214 LVLITVWAVEQ 224 (394)
Q Consensus 214 ~lli~~~~~~~ 224 (394)
+++++..+...
T Consensus 232 ~mvl~~~Gr~~ 242 (386)
T PLN02668 232 AMFLVCLGRTS 242 (386)
T ss_pred EEEEEEecCCC
Confidence 99999877643
|
|
| >KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.28 E-value=0.24 Score=49.98 Aligned_cols=107 Identities=16% Similarity=0.196 Sum_probs=71.7
Q ss_pred CCCCCCEEEEEcCccCccc----cc-CCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeecCCCC---CCCCCccEE
Q 016157 119 SLPSGSLVLDAGCGNGKYL----GL-NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLP---YRSDFGDAA 183 (394)
Q Consensus 119 ~l~~g~~VLDvGCG~G~~l----~~-~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~lp---~~~~~fD~V 183 (394)
.+.||.+|||+.+.+|.=. .. .....|++.|.+..-+...+.+ +..+...|...+| ++. +||-|
T Consensus 238 ~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~~~~~~~-~fDRV 316 (460)
T KOG1122|consen 238 DPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFPEKEFPG-SFDRV 316 (460)
T ss_pred CCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCceEEEccCcccccccccCc-cccee
Confidence 3568899999999999732 22 3445899999999887776655 3445666776655 333 88988
Q ss_pred Eehh------hhhh------cC-------ChhHHHHHHHHHHhccccCcEEEEEEcCccchh
Q 016157 184 ISIA------VLHH------LS-------TESRRKKAIEELVRVVKKGSLVLITVWAVEQED 226 (394)
Q Consensus 184 i~~~------vl~h------l~-------~~~~~~~~L~ei~r~LkpGG~lli~~~~~~~~~ 226 (394)
+.-+ ++.- .. -....+++|-.+..++++||+|+-++-+..-++
T Consensus 317 LLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI~~~E 378 (460)
T KOG1122|consen 317 LLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSITVEE 378 (460)
T ss_pred eecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeecchhh
Confidence 7522 1110 00 000146788889999999999999987665443
|
|
| >COG2384 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.23 E-value=0.17 Score=46.86 Aligned_cols=101 Identities=17% Similarity=0.181 Sum_probs=68.5
Q ss_pred HHHHHcCCCCCCEEEEEcCccCcccc----cCCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeecCCCCCCCCCc
Q 016157 113 VATFLNSLPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFG 180 (394)
Q Consensus 113 l~~~l~~l~~g~~VLDvGCG~G~~l~----~~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~lp~~~~~f 180 (394)
+......++.+.++.||||-.|++.. ..+...+++.|++++.++.|.+. .+++..+|....--.++.+
T Consensus 7 L~~va~~V~~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~~d~~ 86 (226)
T COG2384 7 LTTVANLVKQGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLELEDEI 86 (226)
T ss_pred HHHHHHHHHcCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCccCCc
Confidence 33334445667779999999998633 36667899999999999999876 3566777775432335578
Q ss_pred cEEEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEE
Q 016157 181 DAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLIT 218 (394)
Q Consensus 181 D~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~ 218 (394)
|+|+..++=--+ ....|++-..-|+.==++++.
T Consensus 87 d~ivIAGMGG~l-----I~~ILee~~~~l~~~~rlILQ 119 (226)
T COG2384 87 DVIVIAGMGGTL-----IREILEEGKEKLKGVERLILQ 119 (226)
T ss_pred CEEEEeCCcHHH-----HHHHHHHhhhhhcCcceEEEC
Confidence 999887653322 566777777777633344443
|
|
| >COG3897 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.18 E-value=0.068 Score=48.64 Aligned_cols=92 Identities=22% Similarity=0.187 Sum_probs=59.8
Q ss_pred CCCCEEEEEcCccCcccc--cCCC-cEEEEEeCCHHHHHHHHHc------CCeEEEeecCCCCCCCCCccEEEehhhhhh
Q 016157 121 PSGSLVLDAGCGNGKYLG--LNPD-CFFVGCDISPSLIKICVDR------GHEVLVADAVNLPYRSDFGDAAISIAVLHH 191 (394)
Q Consensus 121 ~~g~~VLDvGCG~G~~l~--~~~~-~~v~gvD~S~~~l~~a~~~------~i~~~~~D~~~lp~~~~~fD~Vi~~~vl~h 191 (394)
-.|.+|||+|.|+|.-.- ...| ..|+..|+.+..+...+-+ ++.+...|... .+..||+++...++..
T Consensus 78 VrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~~g---~~~~~Dl~LagDlfy~ 154 (218)
T COG3897 78 VRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGVSILFTHADLIG---SPPAFDLLLAGDLFYN 154 (218)
T ss_pred cccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhccceeEEeeccccC---CCcceeEEEeeceecC
Confidence 357899999999998532 2333 3788899987766554433 35566666655 4678999999987764
Q ss_pred cCChhHHHHHHHHHHhccccCcEEEEE
Q 016157 192 LSTESRRKKAIEELVRVVKKGSLVLIT 218 (394)
Q Consensus 192 l~~~~~~~~~L~ei~r~LkpGG~lli~ 218 (394)
-+. ..+++.-..++...|-.+++-
T Consensus 155 ~~~---a~~l~~~~~~l~~~g~~vlvg 178 (218)
T COG3897 155 HTE---ADRLIPWKDRLAEAGAAVLVG 178 (218)
T ss_pred chH---HHHHHHHHHHHHhCCCEEEEe
Confidence 433 466777444444444444433
|
|
| >PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=93.70 E-value=0.12 Score=50.30 Aligned_cols=81 Identities=20% Similarity=0.166 Sum_probs=42.5
Q ss_pred HHHHHcCCCC----CCEEEEEcCccCcc---cc-cCCCcEEEEEeCCHHHHHHHHHc---C------CeEEEeecCC---
Q 016157 113 VATFLNSLPS----GSLVLDAGCGNGKY---LG-LNPDCFFVGCDISPSLIKICVDR---G------HEVLVADAVN--- 172 (394)
Q Consensus 113 l~~~l~~l~~----g~~VLDvGCG~G~~---l~-~~~~~~v~gvD~S~~~l~~a~~~---~------i~~~~~D~~~--- 172 (394)
+.+++....+ .-++||||+|.... +. ...++.++|+|+++..++.|++. + |+++...-..
T Consensus 89 i~DlL~~~~~~~~~~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~ 168 (299)
T PF05971_consen 89 IADLLASSNPGIPEKVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIF 168 (299)
T ss_dssp HHHHHT--TCGCS---EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SST
T ss_pred HHHHhhccccccccceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccc
Confidence 4555554332 45899999998753 22 23478999999999999999876 3 5665443221
Q ss_pred --CCCCCCCccEEEehhhhhhcC
Q 016157 173 --LPYRSDFGDAAISIAVLHHLS 193 (394)
Q Consensus 173 --lp~~~~~fD~Vi~~~vl~hl~ 193 (394)
+....+.||+.+|+--++--.
T Consensus 169 ~~i~~~~e~~dftmCNPPFy~s~ 191 (299)
T PF05971_consen 169 DGIIQPNERFDFTMCNPPFYSSQ 191 (299)
T ss_dssp TTSTT--S-EEEEEE-----SS-
T ss_pred hhhhcccceeeEEecCCccccCh
Confidence 222346899999988776543
|
The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A. |
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=93.34 E-value=0.33 Score=50.88 Aligned_cols=97 Identities=20% Similarity=0.191 Sum_probs=68.7
Q ss_pred CCCCEEEEEcCccCcccc----cCCCcEEEEEeCCHHHHHHHHHcCCeEEEeecCC-----------CC----------C
Q 016157 121 PSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVN-----------LP----------Y 175 (394)
Q Consensus 121 ~~g~~VLDvGCG~G~~l~----~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~-----------lp----------~ 175 (394)
.++.+||=+|||.=.+.. ...|..|+++|.+++-++.+++.|.++...|..+ +. +
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~~~ 242 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMALF 242 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEEeccccccccccchhhhcchhHHHHHHHHH
Confidence 468899999999755422 2456689999999999999999988866444322 10 0
Q ss_pred CC--CCccEEEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 016157 176 RS--DFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (394)
Q Consensus 176 ~~--~~fD~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~ 220 (394)
.+ ..+|+||.......-+. +..+.+++.+.+||||+++....
T Consensus 243 ~~~~~gaDVVIetag~pg~~a---P~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 243 AEQAKEVDIIITTALIPGKPA---PKLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred HhccCCCCEEEECCCCCcccC---cchHHHHHHHhcCCCCEEEEEcc
Confidence 11 35899999876543333 33445999999999999877653
|
|
| >PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine | Back alignment and domain information |
|---|
Probab=93.34 E-value=0.22 Score=49.46 Aligned_cols=102 Identities=14% Similarity=0.085 Sum_probs=57.3
Q ss_pred CCEEEEEcCccCcccc--------------------cCCCcEEEEEeCCHHH-------HHHH----HHcCC---eEEEe
Q 016157 123 GSLVLDAGCGNGKYLG--------------------LNPDCFFVGCDISPSL-------IKIC----VDRGH---EVLVA 168 (394)
Q Consensus 123 g~~VLDvGCG~G~~l~--------------------~~~~~~v~gvD~S~~~-------l~~a----~~~~i---~~~~~ 168 (394)
.-+|+|+||..|..+- ..|...|+--|+-.+= +..- ...+- ..+-+
T Consensus 17 ~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~gvpg 96 (334)
T PF03492_consen 17 PFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSGVPG 96 (334)
T ss_dssp EEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEEEES
T ss_pred ceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEecCc
Confidence 3589999999998521 0234688888875431 1111 11121 22445
Q ss_pred ecCCCCCCCCCccEEEehhhhhhcCChh------------------------------------HHHHHHHHHHhccccC
Q 016157 169 DAVNLPYRSDFGDAAISIAVLHHLSTES------------------------------------RRKKAIEELVRVVKKG 212 (394)
Q Consensus 169 D~~~lp~~~~~fD~Vi~~~vl~hl~~~~------------------------------------~~~~~L~ei~r~LkpG 212 (394)
.+..--+++++.|++++...|||++... +...+|+.=++-|+||
T Consensus 97 SFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~G 176 (334)
T PF03492_consen 97 SFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAEELVPG 176 (334)
T ss_dssp -TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHHHEEEE
T ss_pred hhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhheeccC
Confidence 5666558899999999999999986410 1234455555668999
Q ss_pred cEEEEEEcCccc
Q 016157 213 SLVLITVWAVEQ 224 (394)
Q Consensus 213 G~lli~~~~~~~ 224 (394)
|++++...+...
T Consensus 177 G~mvl~~~gr~~ 188 (334)
T PF03492_consen 177 GRMVLTFLGRDE 188 (334)
T ss_dssp EEEEEEEEE-ST
T ss_pred cEEEEEEeeccc
Confidence 999999987665
|
Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B. |
| >KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=93.34 E-value=0.12 Score=53.53 Aligned_cols=94 Identities=12% Similarity=0.248 Sum_probs=74.2
Q ss_pred CEEEEEcCccCcccc--------cCCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeecCCCCCCCCCccEEEehhh
Q 016157 124 SLVLDAGCGNGKYLG--------LNPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFGDAAISIAV 188 (394)
Q Consensus 124 ~~VLDvGCG~G~~l~--------~~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~lp~~~~~fD~Vi~~~v 188 (394)
..|+=+|.|.|-+.. ..+..++++++-++.++-..+.+ .++++..|+..++.+....|++++ ..
T Consensus 369 tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~~W~~~Vtii~~DMR~w~ap~eq~DI~VS-EL 447 (649)
T KOG0822|consen 369 TVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFECWDNRVTIISSDMRKWNAPREQADIIVS-EL 447 (649)
T ss_pred EEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchhhhcCeeEEEeccccccCCchhhccchHH-Hh
Confidence 367899999998743 25678999999999988776655 578999999999865688898876 44
Q ss_pred hhhcCChhHHHHHHHHHHhccccCcEEEEE
Q 016157 189 LHHLSTESRRKKAIEELVRVVKKGSLVLIT 218 (394)
Q Consensus 189 l~hl~~~~~~~~~L~ei~r~LkpGG~lli~ 218 (394)
|--+.+.|.-.+.|.-+.+.|||.|+.+=.
T Consensus 448 LGSFGDNELSPECLDG~q~fLkpdgIsIP~ 477 (649)
T KOG0822|consen 448 LGSFGDNELSPECLDGAQKFLKPDGISIPS 477 (649)
T ss_pred hccccCccCCHHHHHHHHhhcCCCceEccc
Confidence 555556555678999999999999876644
|
|
| >KOG2730 consensus Methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.25 E-value=0.1 Score=48.28 Aligned_cols=65 Identities=18% Similarity=0.198 Sum_probs=48.8
Q ss_pred CCEEEEEcCccCcccc--cCCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeecCCC----CCCCCCccEEEehh
Q 016157 123 GSLVLDAGCGNGKYLG--LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNL----PYRSDFGDAAISIA 187 (394)
Q Consensus 123 g~~VLDvGCG~G~~l~--~~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~l----p~~~~~fD~Vi~~~ 187 (394)
...|+|.-||-|...- ...+..|+++|+++.-+..|+.+ .++|+++|++++ .+....+|+|+.+.
T Consensus 95 ~~~iidaf~g~gGntiqfa~~~~~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~K~~~~~vf~sp 173 (263)
T KOG2730|consen 95 AEVIVDAFCGVGGNTIQFALQGPYVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKLKADKIKYDCVFLSP 173 (263)
T ss_pred cchhhhhhhcCCchHHHHHHhCCeEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHHHHhhhhheeeeeecCC
Confidence 3579999998887542 35677999999999999999887 478999999874 24444556666543
|
|
| >PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) [] | Back alignment and domain information |
|---|
Probab=93.24 E-value=0.099 Score=48.16 Aligned_cols=104 Identities=16% Similarity=0.210 Sum_probs=54.3
Q ss_pred HHHHHcCCCCCCEEEEEcCccCccc-------cc-CCCcEEEEEeCCHHHHH-HHHH-----cCCeEEEeecCCCC----
Q 016157 113 VATFLNSLPSGSLVLDAGCGNGKYL-------GL-NPDCFFVGCDISPSLIK-ICVD-----RGHEVLVADAVNLP---- 174 (394)
Q Consensus 113 l~~~l~~l~~g~~VLDvGCG~G~~l-------~~-~~~~~v~gvD~S~~~l~-~a~~-----~~i~~~~~D~~~lp---- 174 (394)
+.+++-.++|. .|+|+|.-.|.-+ .. ....+|+|+|+...... .+.+ .+++++++|..+..
T Consensus 24 ~qeli~~~kPd-~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~~~rI~~i~Gds~d~~~~~~ 102 (206)
T PF04989_consen 24 YQELIWELKPD-LIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPMSPRITFIQGDSIDPEIVDQ 102 (206)
T ss_dssp HHHHHHHH--S-EEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG----TTEEEEES-SSSTHHHHT
T ss_pred HHHHHHHhCCC-eEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccccCceEEEECCCCCHHHHHH
Confidence 34455556675 8999999998743 22 47789999999544332 2222 37999999987642
Q ss_pred CC----CCCccEEEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 016157 175 YR----SDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 221 (394)
Q Consensus 175 ~~----~~~fD~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~ 221 (394)
.. .....+|+.- . +|.... ..+.|+....+++||+++++....
T Consensus 103 v~~~~~~~~~vlVilD-s-~H~~~h--vl~eL~~y~plv~~G~Y~IVeDt~ 149 (206)
T PF04989_consen 103 VRELASPPHPVLVILD-S-SHTHEH--VLAELEAYAPLVSPGSYLIVEDTI 149 (206)
T ss_dssp SGSS----SSEEEEES-S-----SS--HHHHHHHHHHT--TT-EEEETSHH
T ss_pred HHHhhccCCceEEEEC-C-CccHHH--HHHHHHHhCccCCCCCEEEEEecc
Confidence 11 1222344432 2 233221 577888899999999999887643
|
Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E. |
| >cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1 | Back alignment and domain information |
|---|
Probab=93.06 E-value=0.35 Score=48.58 Aligned_cols=99 Identities=22% Similarity=0.335 Sum_probs=65.6
Q ss_pred cCCCCCCEEEEEcCcc-Ccccc---cCCCc-EEEEEeCCHHHHHHHHHc-CCeEEEeecCC-C-----CC-CCCCccEEE
Q 016157 118 NSLPSGSLVLDAGCGN-GKYLG---LNPDC-FFVGCDISPSLIKICVDR-GHEVLVADAVN-L-----PY-RSDFGDAAI 184 (394)
Q Consensus 118 ~~l~~g~~VLDvGCG~-G~~l~---~~~~~-~v~gvD~S~~~l~~a~~~-~i~~~~~D~~~-l-----p~-~~~~fD~Vi 184 (394)
..+.++.+||.+|||. |..+. ...+. .++++|.++..++.+++. +..++...-.+ + .+ ....+|+|+
T Consensus 180 ~~~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~~D~vl 259 (386)
T cd08283 180 AEVKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHLGAETINFEEVDDVVEALRELTGGRGPDVCI 259 (386)
T ss_pred ccCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCcEEEcCCcchHHHHHHHHHcCCCCCCEEE
Confidence 4567889999999986 65532 23444 699999999999999887 55443222111 1 11 123689998
Q ss_pred ehhhh-----------hhc----CChhHHHHHHHHHHhccccCcEEEEEE
Q 016157 185 SIAVL-----------HHL----STESRRKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 185 ~~~vl-----------~hl----~~~~~~~~~L~ei~r~LkpGG~lli~~ 219 (394)
..-.- .|. .+ ....+.++.++|+|+|++++..
T Consensus 260 d~vg~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~G~iv~~g 306 (386)
T cd08283 260 DAVGMEAHGSPLHKAEQALLKLETD---RPDALREAIQAVRKGGTVSIIG 306 (386)
T ss_pred ECCCCcccccccccccccccccccC---chHHHHHHHHHhccCCEEEEEc
Confidence 75321 111 12 3568899999999999998874
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T |
| >COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=92.97 E-value=0.49 Score=45.97 Aligned_cols=59 Identities=20% Similarity=0.253 Sum_probs=42.6
Q ss_pred HHHHHcCCCCCCEEEEEcCccCcccc----c-CCCcEEEEEeCCHHHHHHHHHc------CCeEEEeecCC
Q 016157 113 VATFLNSLPSGSLVLDAGCGNGKYLG----L-NPDCFFVGCDISPSLIKICVDR------GHEVLVADAVN 172 (394)
Q Consensus 113 l~~~l~~l~~g~~VLDvGCG~G~~l~----~-~~~~~v~gvD~S~~~l~~a~~~------~i~~~~~D~~~ 172 (394)
+...+. ..+++..+|.--|.|..++ . .+...++|+|..+.+++.|+++ ++.+++.++.+
T Consensus 15 ~i~~L~-~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~~r~~~v~~~F~~ 84 (314)
T COG0275 15 VVELLA-PKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFDGRVTLVHGNFAN 84 (314)
T ss_pred HHHhcc-cCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccCCcEEEEeCcHHH
Confidence 333343 4566799999999998654 2 3346799999999999999986 35666665544
|
|
| >cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members | Back alignment and domain information |
|---|
Probab=92.87 E-value=0.48 Score=45.92 Aligned_cols=95 Identities=15% Similarity=0.190 Sum_probs=64.2
Q ss_pred cCCCCCCEEEEEcCcc-Cccc---ccCCCcEEEEEeCCHHHHHHHHHcCCeEEEeecCCC------CCCCCCccEEEehh
Q 016157 118 NSLPSGSLVLDAGCGN-GKYL---GLNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNL------PYRSDFGDAAISIA 187 (394)
Q Consensus 118 ~~l~~g~~VLDvGCG~-G~~l---~~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~l------p~~~~~fD~Vi~~~ 187 (394)
..+.++.+||..|+|. |..+ ....+..+++++.++...+.+++.++..+..+-... ......+|+++...
T Consensus 161 ~~~~~~~~vli~g~g~vG~~~~~la~~~G~~V~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~D~vid~~ 240 (338)
T cd08254 161 GEVKPGETVLVIGLGGLGLNAVQIAKAMGAAVIAVDIKEEKLELAKELGADEVLNSLDDSPKDKKAAGLGGGFDVIFDFV 240 (338)
T ss_pred cCCCCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhCCCEEEcCCCcCHHHHHHHhcCCCceEEEECC
Confidence 3467888999988763 4443 224567899999999999998877765443322111 12345689887643
Q ss_pred hhhhcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 016157 188 VLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 221 (394)
Q Consensus 188 vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~ 221 (394)
. ....+.++.+.|+++|+++...+.
T Consensus 241 g---------~~~~~~~~~~~l~~~G~~v~~g~~ 265 (338)
T cd08254 241 G---------TQPTFEDAQKAVKPGGRIVVVGLG 265 (338)
T ss_pred C---------CHHHHHHHHHHhhcCCEEEEECCC
Confidence 2 135678889999999999987543
|
This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio |
| >PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3) | Back alignment and domain information |
|---|
Probab=92.68 E-value=0.071 Score=44.00 Aligned_cols=41 Identities=10% Similarity=0.288 Sum_probs=30.3
Q ss_pred CccEEEehhhhhhcC---ChhHHHHHHHHHHhccccCcEEEEEE
Q 016157 179 FGDAAISIAVLHHLS---TESRRKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 179 ~fD~Vi~~~vl~hl~---~~~~~~~~L~ei~r~LkpGG~lli~~ 219 (394)
.||+|+|..|.-++. .++-...+++.+++.|+|||.|++--
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEp 44 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEP 44 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE-
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeC
Confidence 489999988755432 12337899999999999999999863
|
Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B. |
| >PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species | Back alignment and domain information |
|---|
Probab=92.49 E-value=0.099 Score=46.15 Aligned_cols=48 Identities=21% Similarity=0.241 Sum_probs=38.5
Q ss_pred CCCccEEEehhhhhhcC--------ChhHHHHHHHHHHhccccCcEEEEEEcCccc
Q 016157 177 SDFGDAAISIAVLHHLS--------TESRRKKAIEELVRVVKKGSLVLITVWAVEQ 224 (394)
Q Consensus 177 ~~~fD~Vi~~~vl~hl~--------~~~~~~~~L~ei~r~LkpGG~lli~~~~~~~ 224 (394)
.++||++.|..+|+|+- ++..-.+++.++.++|||||.+++.++-..+
T Consensus 61 ~~~fD~~as~~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPvG~d 116 (177)
T PF03269_consen 61 AGSFDFAASFSSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPVGTD 116 (177)
T ss_pred hccchhhheechhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEeecCCc
Confidence 47899999999999973 1112367889999999999999999986643
|
|
| >COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=91.79 E-value=0.61 Score=48.79 Aligned_cols=132 Identities=17% Similarity=0.247 Sum_probs=81.7
Q ss_pred HHHHHHHhhcccccccc------ccchHHHHHHHc---CCCCCCEEEEEcCccCccccc-------CC-CcEEEEEeCCH
Q 016157 90 YVHRVYDAIAPHFSSTR------FAKWPKVATFLN---SLPSGSLVLDAGCGNGKYLGL-------NP-DCFFVGCDISP 152 (394)
Q Consensus 90 ~v~~~Yd~~a~~y~~~~------~~~~~~l~~~l~---~l~~g~~VLDvGCG~G~~l~~-------~~-~~~v~gvD~S~ 152 (394)
.+..+|+.....|.... +-..+.+..++. .+.+..+|+|-.||+|.++.. .. ...++|.|++.
T Consensus 145 ~~G~~yE~ll~~fa~~~~k~~GEfyTP~~v~~liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~ 224 (489)
T COG0286 145 LFGDAYEYLLRKFAEAEGKEAGEFYTPREVSELIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEIND 224 (489)
T ss_pred chhHHHHHHHHHHHHhcCCCCCccCChHHHHHHHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCH
Confidence 44555555555554322 222233333332 224677999999999987531 11 36799999999
Q ss_pred HHHHHHHHc----CCe----EEEeecCCCCC-----CCCCccEEEehhhhh---hcC------------------C-hhH
Q 016157 153 SLIKICVDR----GHE----VLVADAVNLPY-----RSDFGDAAISIAVLH---HLS------------------T-ESR 197 (394)
Q Consensus 153 ~~l~~a~~~----~i~----~~~~D~~~lp~-----~~~~fD~Vi~~~vl~---hl~------------------~-~~~ 197 (394)
.....|+-+ ++. ...+|-..-|. ..+.||+|+++--+. +.. . ...
T Consensus 225 ~t~~l~~mN~~lhgi~~~~~i~~~dtl~~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (489)
T COG0286 225 TTYRLAKMNLILHGIEGDANIRHGDTLSNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSA 304 (489)
T ss_pred HHHHHHHHHHHHhCCCccccccccccccCCcccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCch
Confidence 999999876 443 34455444442 236799998854332 111 0 111
Q ss_pred HHHHHHHHHhccccCcEEEEEEcC
Q 016157 198 RKKAIEELVRVVKKGSLVLITVWA 221 (394)
Q Consensus 198 ~~~~L~ei~r~LkpGG~lli~~~~ 221 (394)
-..+++.+...|+|||+..|..+.
T Consensus 305 ~~af~~h~~~~l~~~g~aaivl~~ 328 (489)
T COG0286 305 DLAFLQHILYKLKPGGRAAIVLPD 328 (489)
T ss_pred HHHHHHHHHHhcCCCceEEEEecC
Confidence 278899999999999987777654
|
|
| >KOG4058 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.59 E-value=1.2 Score=38.96 Aligned_cols=103 Identities=14% Similarity=0.176 Sum_probs=64.2
Q ss_pred HHHHHHHcCCCCCCEEEEEcCccCcccc--cCCC-cEEEEEeCCHHHHHHHHHc--------CCeEEEeecCCCCCCCCC
Q 016157 111 PKVATFLNSLPSGSLVLDAGCGNGKYLG--LNPD-CFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDF 179 (394)
Q Consensus 111 ~~l~~~l~~l~~g~~VLDvGCG~G~~l~--~~~~-~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~lp~~~~~ 179 (394)
..+..++.. .+.++.+|+|+|.|+..- ..-+ ...+|+++++-++.+++-+ ...|..-|+....+.+
T Consensus 62 ~nVLSll~~-n~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~dl~d-- 138 (199)
T KOG4058|consen 62 ENVLSLLRG-NPKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVDLRD-- 138 (199)
T ss_pred HHHHHHccC-CCCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhccccc--
Confidence 344555554 344589999999999743 2223 4689999999999887754 3567778887766654
Q ss_pred ccEEEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCc
Q 016157 180 GDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAV 222 (394)
Q Consensus 180 fD~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~ 222 (394)
|..++.+.+=.-+++ .-..+..-+..+.+++-.-|..
T Consensus 139 y~~vviFgaes~m~d------Le~KL~~E~p~nt~vvacRFPL 175 (199)
T KOG4058|consen 139 YRNVVIFGAESVMPD------LEDKLRTELPANTRVVACRFPL 175 (199)
T ss_pred cceEEEeehHHHHhh------hHHHHHhhCcCCCeEEEEecCC
Confidence 344444443333332 2334444566777777766544
|
|
| >KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.38 E-value=0.85 Score=44.21 Aligned_cols=100 Identities=17% Similarity=0.146 Sum_probs=70.1
Q ss_pred CCCCCEEEEEcCccCccccc---CCCc-EEEEEeCCHHHHHHHHHc-----------CCeEEEeecCCCC--CCCCCccE
Q 016157 120 LPSGSLVLDAGCGNGKYLGL---NPDC-FFVGCDISPSLIKICVDR-----------GHEVLVADAVNLP--YRSDFGDA 182 (394)
Q Consensus 120 l~~g~~VLDvGCG~G~~l~~---~~~~-~v~gvD~S~~~l~~a~~~-----------~i~~~~~D~~~lp--~~~~~fD~ 182 (394)
++...++|=||-|.|.+++. .+.. +++-+|+....++..++. .+.+..+|...+- ...+.||+
T Consensus 119 ~~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dV 198 (337)
T KOG1562|consen 119 HPNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDV 198 (337)
T ss_pred CCCCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCceE
Confidence 34456999999999999863 2333 788899999988887765 4677788765432 34689999
Q ss_pred EEehhhhhhcCCh-hHHHHHHHHHHhccccCcEEEEEE
Q 016157 183 AISIAVLHHLSTE-SRRKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 183 Vi~~~vl~hl~~~-~~~~~~L~ei~r~LkpGG~lli~~ 219 (394)
|+.-..---.+.. --.+...+.+.+.||+||++++..
T Consensus 199 ii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ 236 (337)
T KOG1562|consen 199 IITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQG 236 (337)
T ss_pred EEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEec
Confidence 9873211111100 014678899999999999999875
|
|
| >KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=89.70 E-value=0.22 Score=46.43 Aligned_cols=95 Identities=18% Similarity=0.222 Sum_probs=65.4
Q ss_pred CEEEEEcCccCccccc---------C-CC---cEEEEEeCCHHHHHHHHHcCCeEEEeecCCCC--------CCCCCccE
Q 016157 124 SLVLDAGCGNGKYLGL---------N-PD---CFFVGCDISPSLIKICVDRGHEVLVADAVNLP--------YRSDFGDA 182 (394)
Q Consensus 124 ~~VLDvGCG~G~~l~~---------~-~~---~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~lp--------~~~~~fD~ 182 (394)
.+++|+...+|.+... . .+ ..++++|+-+ | |--.|+--+++|+.... |..+..|+
T Consensus 43 ~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~-M---aPI~GV~qlq~DIT~~stae~Ii~hfggekAdl 118 (294)
T KOG1099|consen 43 KRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQP-M---APIEGVIQLQGDITSASTAEAIIEHFGGEKADL 118 (294)
T ss_pred hHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEeccc-C---CccCceEEeecccCCHhHHHHHHHHhCCCCccE
Confidence 6899999999987431 1 11 2499999853 1 11237788899998743 55678999
Q ss_pred EEehh-----hhhhcCC---hhHHHHHHHHHHhccccCcEEEEEEcCc
Q 016157 183 AISIA-----VLHHLST---ESRRKKAIEELVRVVKKGSLVLITVWAV 222 (394)
Q Consensus 183 Vi~~~-----vl~hl~~---~~~~~~~L~ei~r~LkpGG~lli~~~~~ 222 (394)
|+|-+ .||-+.. .+.+..+|.-...+|||||.|+--.|-.
T Consensus 119 VvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKifRg 166 (294)
T KOG1099|consen 119 VVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAKIFRG 166 (294)
T ss_pred EEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehhhhcc
Confidence 99944 3444432 1235677888889999999998776543
|
|
| >KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=89.56 E-value=1.3 Score=44.12 Aligned_cols=111 Identities=17% Similarity=0.202 Sum_probs=68.4
Q ss_pred HHcCCCCCCEEEEEcCccCccc----cc--C--CCcEEEEEeCCHHHHHHHH---Hc----CCeEEEeecCCCC------
Q 016157 116 FLNSLPSGSLVLDAGCGNGKYL----GL--N--PDCFFVGCDISPSLIKICV---DR----GHEVLVADAVNLP------ 174 (394)
Q Consensus 116 ~l~~l~~g~~VLDvGCG~G~~l----~~--~--~~~~v~gvD~S~~~l~~a~---~~----~i~~~~~D~~~lp------ 174 (394)
++..+.||.+|||+...+|.=. .. . ....|++=|.+..-+.... ++ ++.+...|+...|
T Consensus 149 L~L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~~~v~~~~~~~~p~~~~~~ 228 (375)
T KOG2198|consen 149 LALGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPNLLVTNHDASLFPNIYLKD 228 (375)
T ss_pred hhcccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCcceeeecccceecccccccc
Confidence 3456789999999999999732 22 1 1348999999886444333 22 2333333433332
Q ss_pred ---CCCCCccEEEeh------hhhhhcCCh--------------hHHHHHHHHHHhccccCcEEEEEEcCccchh
Q 016157 175 ---YRSDFGDAAISI------AVLHHLSTE--------------SRRKKAIEELVRVVKKGSLVLITVWAVEQED 226 (394)
Q Consensus 175 ---~~~~~fD~Vi~~------~vl~hl~~~--------------~~~~~~L~ei~r~LkpGG~lli~~~~~~~~~ 226 (394)
.....||-|++- .++.+-++- .-...+|.+-.++||+||+++-++-+.....
T Consensus 229 ~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSLnpie 303 (375)
T KOG2198|consen 229 GNDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSLNPIE 303 (375)
T ss_pred CchhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCCCchh
Confidence 223468888761 122221111 1135788999999999999999998776543
|
|
| >COG4301 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=89.14 E-value=2.2 Score=40.45 Aligned_cols=99 Identities=20% Similarity=0.243 Sum_probs=68.2
Q ss_pred CCCCCEEEEEcCccCcccc----c----CCCcEEEEEeCCHHHHHHHHHc------CCe--EEEeecCC----CCCCCCC
Q 016157 120 LPSGSLVLDAGCGNGKYLG----L----NPDCFFVGCDISPSLIKICVDR------GHE--VLVADAVN----LPYRSDF 179 (394)
Q Consensus 120 l~~g~~VLDvGCG~G~~l~----~----~~~~~v~gvD~S~~~l~~a~~~------~i~--~~~~D~~~----lp~~~~~ 179 (394)
.-.+..++|+|+|+..-.+ . ..-..++.+|+|...++.-.+. +++ -+.+|.+. +| ..++
T Consensus 76 ~~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~~~-~~~~ 154 (321)
T COG4301 76 ITGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELALAELP-RGGR 154 (321)
T ss_pred hhCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHhccc-CCCe
Confidence 3346789999999987322 1 2235899999999988654332 443 35556542 33 2333
Q ss_pred ccEEEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 016157 180 GDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (394)
Q Consensus 180 fD~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~ 220 (394)
==.++....|-.+...+ ...+|..+...|+||-.+++-+-
T Consensus 155 Rl~~flGStlGN~tp~e-~~~Fl~~l~~a~~pGd~~LlGvD 194 (321)
T COG4301 155 RLFVFLGSTLGNLTPGE-CAVFLTQLRGALRPGDYFLLGVD 194 (321)
T ss_pred EEEEEecccccCCChHH-HHHHHHHHHhcCCCcceEEEecc
Confidence 33455566788887655 78999999999999999999874
|
|
| >TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit | Back alignment and domain information |
|---|
Probab=89.00 E-value=0.67 Score=48.56 Aligned_cols=92 Identities=22% Similarity=0.237 Sum_probs=66.4
Q ss_pred CCCEEEEEcCccCcccc----cCCCcEEEEEeCCHHHHHHHHHcCCeEEEeecCC-----------------------CC
Q 016157 122 SGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVN-----------------------LP 174 (394)
Q Consensus 122 ~g~~VLDvGCG~G~~l~----~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~-----------------------lp 174 (394)
++.++|=+|+|.=.... ...+..|+++|.++.-++.++..+.+++..|..+ ++
T Consensus 163 p~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~~~ 242 (511)
T TIGR00561 163 PPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAEFLELDFKEEGGSGDGYAKVMSEEFIAAEMELFA 242 (511)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeccccccccccccceeecCHHHHHHHHHHHH
Confidence 46799999999754321 2456789999999999999988887776666421 11
Q ss_pred CCCCCccEEEehhhhhhcCChhHHHHHHHHHHhccccCcEEE
Q 016157 175 YRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVL 216 (394)
Q Consensus 175 ~~~~~fD~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~ll 216 (394)
-.-..+|+|+....+..-+. +.-..+++.+.+|||+.++
T Consensus 243 e~~~~~DIVI~TalipG~~a---P~Lit~emv~~MKpGsvIV 281 (511)
T TIGR00561 243 AQAKEVDIIITTALIPGKPA---PKLITEEMVDSMKAGSVIV 281 (511)
T ss_pred HHhCCCCEEEECcccCCCCC---CeeehHHHHhhCCCCCEEE
Confidence 11246899988876655444 5567889999999998865
|
In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff. |
| >PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [] | Back alignment and domain information |
|---|
Probab=88.93 E-value=0.19 Score=41.34 Aligned_cols=28 Identities=29% Similarity=0.259 Sum_probs=20.2
Q ss_pred CCEEEEEcCccCcccc--cCCCcEEEEEeC
Q 016157 123 GSLVLDAGCGNGKYLG--LNPDCFFVGCDI 150 (394)
Q Consensus 123 g~~VLDvGCG~G~~l~--~~~~~~v~gvD~ 150 (394)
....+|||||+|.+.- ..-|..=.|+|.
T Consensus 59 ~~~FVDlGCGNGLLV~IL~~EGy~G~GiD~ 88 (112)
T PF07757_consen 59 FQGFVDLGCGNGLLVYILNSEGYPGWGIDA 88 (112)
T ss_pred CCceEEccCCchHHHHHHHhCCCCcccccc
Confidence 4579999999998643 245556678875
|
; GO: 0008168 methyltransferase activity |
| >KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=88.90 E-value=0.89 Score=43.16 Aligned_cols=100 Identities=18% Similarity=0.183 Sum_probs=63.1
Q ss_pred CCCEEEEEcCccCcc---cccCCCcEEEEEeCCHHHHHH--HHHc--------CCeEEEeec-----CCCCCCCCC-ccE
Q 016157 122 SGSLVLDAGCGNGKY---LGLNPDCFFVGCDISPSLIKI--CVDR--------GHEVLVADA-----VNLPYRSDF-GDA 182 (394)
Q Consensus 122 ~g~~VLDvGCG~G~~---l~~~~~~~v~gvD~S~~~l~~--a~~~--------~i~~~~~D~-----~~lp~~~~~-fD~ 182 (394)
....||++|.|+|.- +....+..|+-.|+..-+... .+++ +..+....+ ....+.... ||+
T Consensus 86 ~~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~Dl 165 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAALLLGAEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFDL 165 (248)
T ss_pred cceeEEEecCCccHHHHHHHHHhcceeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCcccE
Confidence 355799999999953 223467788888876654332 2222 212222221 111122234 999
Q ss_pred EEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCccc
Q 016157 183 AISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQ 224 (394)
Q Consensus 183 Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~~~ 224 (394)
|++.-++.+-.. ...++.-++..|-.+|.+++...-.+.
T Consensus 166 ilasDvvy~~~~---~e~Lv~tla~ll~~~~~i~l~~~lr~~ 204 (248)
T KOG2793|consen 166 ILASDVVYEEES---FEGLVKTLAFLLAKDGTIFLAYPLRRD 204 (248)
T ss_pred EEEeeeeecCCc---chhHHHHHHHHHhcCCeEEEEEecccc
Confidence 999999988877 567788888888888876666654443
|
|
| >PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown | Back alignment and domain information |
|---|
Probab=87.63 E-value=0.75 Score=39.03 Aligned_cols=104 Identities=19% Similarity=0.214 Sum_probs=56.4
Q ss_pred hHHHHHHHcCCCCCCEEEEEcCccCcccc---cCCCcEEEEEeCCHHHHHHHHHcCCeEEEeecCCCCCC-CCCccEEEe
Q 016157 110 WPKVATFLNSLPSGSLVLDAGCGNGKYLG---LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYR-SDFGDAAIS 185 (394)
Q Consensus 110 ~~~l~~~l~~l~~g~~VLDvGCG~G~~l~---~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~lp~~-~~~fD~Vi~ 185 (394)
|.++..++.......+|+|||-|.=.-.. ...|..|+++|+.+. .+. .++.++..|+.+..+. -...|+|.+
T Consensus 1 ~~~~a~~ia~~~~~~kiVEVGiG~~~~vA~~L~~~G~dV~~tDi~~~---~a~-~g~~~v~DDif~P~l~iY~~a~lIYS 76 (127)
T PF03686_consen 1 MVDFAEYIARLNNYGKIVEVGIGFNPEVAKKLKERGFDVIATDINPR---KAP-EGVNFVVDDIFNPNLEIYEGADLIYS 76 (127)
T ss_dssp HHHHHHHHHHHS-SSEEEEET-TT--HHHHHHHHHS-EEEEE-SS-S--------STTEE---SSS--HHHHTTEEEEEE
T ss_pred CchHHHHHHHhCCCCcEEEECcCCCHHHHHHHHHcCCcEEEEECccc---ccc-cCcceeeecccCCCHHHhcCCcEEEE
Confidence 44566666654555699999987644321 145689999999988 333 5899999999984321 145788888
Q ss_pred hhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCccch
Q 016157 186 IAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQE 225 (394)
Q Consensus 186 ~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~~~~ 225 (394)
+-. .++ ....|-++++. -|.-++|...+.+..
T Consensus 77 iRP-----P~E-l~~~il~lA~~--v~adlii~pL~~e~~ 108 (127)
T PF03686_consen 77 IRP-----PPE-LQPPILELAKK--VGADLIIRPLGGESP 108 (127)
T ss_dssp ES-------TT-SHHHHHHHHHH--HT-EEEEE-BTTB--
T ss_pred eCC-----ChH-HhHHHHHHHHH--hCCCEEEECCCCCCC
Confidence 653 222 56667777764 466788887776653
|
; PDB: 2K4M_A. |
| >KOG2920 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.58 E-value=0.31 Score=46.83 Aligned_cols=96 Identities=14% Similarity=0.144 Sum_probs=57.5
Q ss_pred CCCCEEEEEcCccCccc---ccCCCcEEEEEeCCHHHHHHHHHc--------------C---CeEEEeecCCCCC-CCC-
Q 016157 121 PSGSLVLDAGCGNGKYL---GLNPDCFFVGCDISPSLIKICVDR--------------G---HEVLVADAVNLPY-RSD- 178 (394)
Q Consensus 121 ~~g~~VLDvGCG~G~~l---~~~~~~~v~gvD~S~~~l~~a~~~--------------~---i~~~~~D~~~lp~-~~~- 178 (394)
-.|.+|||+|||.|.-- .......+...|.|...++.-.-- . ..+...++.++-+ ..+
T Consensus 115 ~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~~~t~pn~~~~~~~~~~~~e~~~~~~i~~s~l~dg~~~~t~~ 194 (282)
T KOG2920|consen 115 FSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLRLVTLPNILVNSHAGVEEKENHKVDEILNSLLSDGVFNHTER 194 (282)
T ss_pred ecCceeEecCCcccccchhhhhhccceeeeEecchhheeeecccceecchhhhhhhhhcccceeccccccccchhhhccc
Confidence 46789999999998742 222225677777777765321110 0 1112221111111 113
Q ss_pred -CccEEEehhhhhhcCChhHHHHH-HHHHHhccccCcEEEEEE
Q 016157 179 -FGDAAISIAVLHHLSTESRRKKA-IEELVRVVKKGSLVLITV 219 (394)
Q Consensus 179 -~fD~Vi~~~vl~hl~~~~~~~~~-L~ei~r~LkpGG~lli~~ 219 (394)
.||+|.+...+...... ... +.....+++++|++++..
T Consensus 195 ~~ydlIlsSetiy~~~~~---~~~~~~~r~~l~~~D~~~~~aA 234 (282)
T KOG2920|consen 195 THYDLILSSETIYSIDSL---AVLYLLHRPCLLKTDGVFYVAA 234 (282)
T ss_pred cchhhhhhhhhhhCcchh---hhhHhhhhhhcCCccchhhhhh
Confidence 79999999998877662 233 667778889999887763
|
|
| >TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=87.19 E-value=2.7 Score=41.22 Aligned_cols=91 Identities=16% Similarity=0.149 Sum_probs=61.3
Q ss_pred cCCCCCCEEEEEcCccCc-cc---ccCCCcEEEEEeCCHHHHHHHHHcCCeEEEeecCCCCCCCCCccEEEehhhhhhcC
Q 016157 118 NSLPSGSLVLDAGCGNGK-YL---GLNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLS 193 (394)
Q Consensus 118 ~~l~~g~~VLDvGCG~G~-~l---~~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~lp~~~~~fD~Vi~~~vl~hl~ 193 (394)
..+.+|.+||=.|+|.-. ++ ....+..+++++.++.-++.+++.|...+. |..+. ..+.+|+++.....
T Consensus 161 ~~~~~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~~Ga~~vi-~~~~~--~~~~~d~~i~~~~~---- 233 (329)
T TIGR02822 161 ASLPPGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLALALGAASAG-GAYDT--PPEPLDAAILFAPA---- 233 (329)
T ss_pred cCCCCCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHhCCceec-ccccc--CcccceEEEECCCc----
Confidence 356789999999975322 21 124567899999999999999988765432 11111 12357876643321
Q ss_pred ChhHHHHHHHHHHhccccCcEEEEEEc
Q 016157 194 TESRRKKAIEELVRVVKKGSLVLITVW 220 (394)
Q Consensus 194 ~~~~~~~~L~ei~r~LkpGG~lli~~~ 220 (394)
...+....+.|++||++++.-.
T Consensus 234 -----~~~~~~~~~~l~~~G~~v~~G~ 255 (329)
T TIGR02822 234 -----GGLVPPALEALDRGGVLAVAGI 255 (329)
T ss_pred -----HHHHHHHHHhhCCCcEEEEEec
Confidence 2467888899999999988754
|
Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized. |
| >KOG2671 consensus Putative RNA methylase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=87.04 E-value=0.56 Score=46.30 Aligned_cols=75 Identities=27% Similarity=0.326 Sum_probs=58.3
Q ss_pred HHHHHHHcCCCCCCEEEEEcCccCcccc--cCCCcEEEEEeCCHHHHHHHHHc-----------C-----CeEEEeecCC
Q 016157 111 PKVATFLNSLPSGSLVLDAGCGNGKYLG--LNPDCFFVGCDISPSLIKICVDR-----------G-----HEVLVADAVN 172 (394)
Q Consensus 111 ~~l~~~l~~l~~g~~VLDvGCG~G~~l~--~~~~~~v~gvD~S~~~l~~a~~~-----------~-----i~~~~~D~~~ 172 (394)
.-+..-++...||..|+|-=.|||.++- ..-|+.|+|.||.-.+++..+.. + +.++.+|..+
T Consensus 197 Sli~AN~Amv~pGdivyDPFVGTGslLvsaa~FGa~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn 276 (421)
T KOG2671|consen 197 SLIMANQAMVKPGDIVYDPFVGTGSLLVSAAHFGAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSN 276 (421)
T ss_pred HHHHhhhhccCCCCEEecCccccCceeeehhhhcceeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeecccC
Confidence 3445555678999999999999999864 35678999999999988843322 2 5788899998
Q ss_pred CCCCC-CCccEEEe
Q 016157 173 LPYRS-DFGDAAIS 185 (394)
Q Consensus 173 lp~~~-~~fD~Vi~ 185 (394)
-|+.. ..||+|+|
T Consensus 277 ~~~rsn~~fDaIvc 290 (421)
T KOG2671|consen 277 PPLRSNLKFDAIVC 290 (421)
T ss_pred cchhhcceeeEEEe
Confidence 88654 58999998
|
|
| >PRK09880 L-idonate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=86.69 E-value=2.1 Score=42.12 Aligned_cols=91 Identities=18% Similarity=0.254 Sum_probs=59.5
Q ss_pred CCCCEEEEEcCcc-Cccc---ccCCCc-EEEEEeCCHHHHHHHHHcCCeEEEe----ecCCCCCCCCCccEEEehhhhhh
Q 016157 121 PSGSLVLDAGCGN-GKYL---GLNPDC-FFVGCDISPSLIKICVDRGHEVLVA----DAVNLPYRSDFGDAAISIAVLHH 191 (394)
Q Consensus 121 ~~g~~VLDvGCG~-G~~l---~~~~~~-~v~gvD~S~~~l~~a~~~~i~~~~~----D~~~lp~~~~~fD~Vi~~~vl~h 191 (394)
.+|.+||=+|||. |.++ ....+. .|+++|.+++-++.+++.|...+.. ++.++....+.+|+|+....
T Consensus 168 ~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~g~~D~vid~~G--- 244 (343)
T PRK09880 168 LQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGADKLVNPQNDDLDHYKAEKGYFDVSFEVSG--- 244 (343)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCCcEEecCCcccHHHHhccCCCCCEEEECCC---
Confidence 4688999898752 2221 124465 7999999999999999887654321 11111111235898876533
Q ss_pred cCChhHHHHHHHHHHhccccCcEEEEEEc
Q 016157 192 LSTESRRKKAIEELVRVVKKGSLVLITVW 220 (394)
Q Consensus 192 l~~~~~~~~~L~ei~r~LkpGG~lli~~~ 220 (394)
. ...+..+.++|++||++++...
T Consensus 245 --~----~~~~~~~~~~l~~~G~iv~~G~ 267 (343)
T PRK09880 245 --H----PSSINTCLEVTRAKGVMVQVGM 267 (343)
T ss_pred --C----HHHHHHHHHHhhcCCEEEEEcc
Confidence 1 3467788899999999988754
|
|
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=85.77 E-value=0.64 Score=44.97 Aligned_cols=57 Identities=19% Similarity=0.166 Sum_probs=37.4
Q ss_pred CeEEEeecCCC--CCCCCCccEEEehh--hh--h--h----cCCh---hHHHHHHHHHHhccccCcEEEEEE
Q 016157 163 HEVLVADAVNL--PYRSDFGDAAISIA--VL--H--H----LSTE---SRRKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 163 i~~~~~D~~~l--p~~~~~fD~Vi~~~--vl--~--h----l~~~---~~~~~~L~ei~r~LkpGG~lli~~ 219 (394)
..++++|+.+. .+++++||+|++.- .+ . . .... .-....|.++.++|||||.+++..
T Consensus 9 ~~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~ 80 (284)
T PRK11524 9 KTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMN 80 (284)
T ss_pred CEEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEc
Confidence 46777887763 35678899998842 11 0 0 0000 013578999999999999999863
|
|
| >cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=85.76 E-value=3.5 Score=38.09 Aligned_cols=92 Identities=16% Similarity=0.225 Sum_probs=60.4
Q ss_pred CCCCCCEEEEEcCcc-Ccccc---cCCCcEEEEEeCCHHHHHHHHHcCCeEEEeecCCCC-------CCCCCccEEEehh
Q 016157 119 SLPSGSLVLDAGCGN-GKYLG---LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLP-------YRSDFGDAAISIA 187 (394)
Q Consensus 119 ~l~~g~~VLDvGCG~-G~~l~---~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~lp-------~~~~~fD~Vi~~~ 187 (394)
.+.++.+||-.|+|. |..+. ...+..+++++.++...+.+++.+...+. +..... .....+|+++...
T Consensus 131 ~~~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~d~vi~~~ 209 (271)
T cd05188 131 VLKPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKELGADHVI-DYKEEDLEEELRLTGGGGADVVIDAV 209 (271)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhCCceec-cCCcCCHHHHHHHhcCCCCCEEEECC
Confidence 346789999999986 43321 24568999999999888888766532221 211111 1235689998653
Q ss_pred hhhhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 016157 188 VLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (394)
Q Consensus 188 vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~ 220 (394)
. . ...+..+.+.|+++|+++....
T Consensus 210 ~-----~----~~~~~~~~~~l~~~G~~v~~~~ 233 (271)
T cd05188 210 G-----G----PETLAQALRLLRPGGRIVVVGG 233 (271)
T ss_pred C-----C----HHHHHHHHHhcccCCEEEEEcc
Confidence 2 1 1456777889999999887654
|
The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro |
| >PHA01634 hypothetical protein | Back alignment and domain information |
|---|
Probab=84.04 E-value=4.3 Score=34.69 Aligned_cols=77 Identities=13% Similarity=0.032 Sum_probs=47.0
Q ss_pred cchHHHHHHHcCC-CCCCEEEEEcCccCccccc--CCCc-EEEEEeCCHHHHHHHHHcCCe-EEEeec----CCCCCCCC
Q 016157 108 AKWPKVATFLNSL-PSGSLVLDAGCGNGKYLGL--NPDC-FFVGCDISPSLIKICVDRGHE-VLVADA----VNLPYRSD 178 (394)
Q Consensus 108 ~~~~~l~~~l~~l-~~g~~VLDvGCG~G~~l~~--~~~~-~v~gvD~S~~~l~~a~~~~i~-~~~~D~----~~lp~~~~ 178 (394)
..|+....-...+ -.+.+|+|||.+-|.-+-+ ..|+ .|+++++++.+.+..++. +. +...|- .+++-.-+
T Consensus 13 ~ywrey~~~Y~~idvk~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een-~k~nnI~DK~v~~~eW~~~Y~ 91 (156)
T PHA01634 13 DYWREYPHAYGMLNVYQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEV-CAYFNICDKAVMKGEWNGEYE 91 (156)
T ss_pred hHHHHHHHHhhheeecCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHH-hhhheeeeceeecccccccCC
Confidence 3455544333332 2467999999999985432 3444 899999999999998875 21 122221 13333335
Q ss_pred CccEEEe
Q 016157 179 FGDAAIS 185 (394)
Q Consensus 179 ~fD~Vi~ 185 (394)
.||+.++
T Consensus 92 ~~Di~~i 98 (156)
T PHA01634 92 DVDIFVM 98 (156)
T ss_pred CcceEEE
Confidence 6787765
|
|
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=83.45 E-value=0.84 Score=42.75 Aligned_cols=55 Identities=15% Similarity=0.293 Sum_probs=35.5
Q ss_pred eEEEeecCCC--CCCCCCccEEEehh--hh--hhcCC--------hhHHHHHHHHHHhccccCcEEEEE
Q 016157 164 EVLVADAVNL--PYRSDFGDAAISIA--VL--HHLST--------ESRRKKAIEELVRVVKKGSLVLIT 218 (394)
Q Consensus 164 ~~~~~D~~~l--p~~~~~fD~Vi~~~--vl--~hl~~--------~~~~~~~L~ei~r~LkpGG~lli~ 218 (394)
+++.+|+.++ .++++++|+|+..- .+ .+-.. .+-....+.++.|+|||||.+++.
T Consensus 3 ~l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if 71 (227)
T PRK13699 3 RFILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSF 71 (227)
T ss_pred eEEechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 5667777664 46678888888751 11 10000 011357899999999999988763
|
|
| >COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=83.45 E-value=3.6 Score=37.57 Aligned_cols=108 Identities=12% Similarity=0.190 Sum_probs=73.4
Q ss_pred HHHHHcCCCCCCEEEEEcCccCcccc--------cCCCcEEEEEeCCHHHHHHHHH--cCCeEEEeecCCCC-------C
Q 016157 113 VATFLNSLPSGSLVLDAGCGNGKYLG--------LNPDCFFVGCDISPSLIKICVD--RGHEVLVADAVNLP-------Y 175 (394)
Q Consensus 113 l~~~l~~l~~g~~VLDvGCG~G~~l~--------~~~~~~v~gvD~S~~~l~~a~~--~~i~~~~~D~~~lp-------~ 175 (394)
+.+++-.++|. .|+|+|.-.|.-+- .....+|+++|++-..++-+.. .++.|++++-.+.. .
T Consensus 61 yQellw~~~P~-lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e~p~i~f~egss~dpai~eqi~~~ 139 (237)
T COG3510 61 YQELLWELQPS-LVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAAREVPDILFIEGSSTDPAIAEQIRRL 139 (237)
T ss_pred HHHHHHhcCCc-eeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhcCCCeEEEeCCCCCHHHHHHHHHH
Confidence 34555566665 89999999887432 2344799999999877654433 38999999887643 2
Q ss_pred CCCCccEEEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCccc
Q 016157 176 RSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQ 224 (394)
Q Consensus 176 ~~~~fD~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~~~ 224 (394)
..+.--+.++-...||... ..+.|+-..++|.-|-++++..-..++
T Consensus 140 ~~~y~kIfvilDsdHs~~h---vLAel~~~~pllsaG~Y~vVeDs~v~d 185 (237)
T COG3510 140 KNEYPKIFVILDSDHSMEH---VLAELKLLAPLLSAGDYLVVEDSNVND 185 (237)
T ss_pred hcCCCcEEEEecCCchHHH---HHHHHHHhhhHhhcCceEEEecccccC
Confidence 2233345555566666654 677788888999999888877544433
|
|
| >cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins | Back alignment and domain information |
|---|
Probab=83.25 E-value=5.8 Score=38.31 Aligned_cols=94 Identities=16% Similarity=0.109 Sum_probs=60.7
Q ss_pred cCCCCCCEEEEEcCc-cCcccc---cCCCcEEEEEeCCHHHHHHHHHcCCeEEEeecC-CCC-CCCCCccEEEehhhhhh
Q 016157 118 NSLPSGSLVLDAGCG-NGKYLG---LNPDCFFVGCDISPSLIKICVDRGHEVLVADAV-NLP-YRSDFGDAAISIAVLHH 191 (394)
Q Consensus 118 ~~l~~g~~VLDvGCG-~G~~l~---~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~-~lp-~~~~~fD~Vi~~~vl~h 191 (394)
..+.++.+||-+|+| .|..+. ...+..+++++.+...++.+++.+...+..+.. ... -..+.+|+++....
T Consensus 158 ~~~~~~~~vlI~g~g~iG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~vi~~~~--- 234 (330)
T cd08245 158 AGPRPGERVAVLGIGGLGHLAVQYARAMGFETVAITRSPDKRELARKLGADEVVDSGAELDEQAAAGGADVILVTVV--- 234 (330)
T ss_pred hCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhCCcEEeccCCcchHHhccCCCCEEEECCC---
Confidence 356788899999886 444321 245678999999999988887666433222111 110 01245888876422
Q ss_pred cCChhHHHHHHHHHHhccccCcEEEEEEc
Q 016157 192 LSTESRRKKAIEELVRVVKKGSLVLITVW 220 (394)
Q Consensus 192 l~~~~~~~~~L~ei~r~LkpGG~lli~~~ 220 (394)
....+..+.+.|+++|+++....
T Consensus 235 ------~~~~~~~~~~~l~~~G~~i~~~~ 257 (330)
T cd08245 235 ------SGAAAEAALGGLRRGGRIVLVGL 257 (330)
T ss_pred ------cHHHHHHHHHhcccCCEEEEECC
Confidence 13467788899999999988753
|
Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an |
| >PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=83.19 E-value=3.3 Score=34.25 Aligned_cols=72 Identities=11% Similarity=0.150 Sum_probs=52.5
Q ss_pred CCcEEEEEeCCHHHHHHHHHcCCeEEEeecCCC-------C-CCCCCccEEEehhhhhhcCChhHHHHHHHHHHhccccC
Q 016157 141 PDCFFVGCDISPSLIKICVDRGHEVLVADAVNL-------P-YRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKG 212 (394)
Q Consensus 141 ~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~l-------p-~~~~~fD~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpG 212 (394)
.+.+|+++|.++.-++.+++.+...+. |..+. . .....+|+|+-... . ...++....+|+|+
T Consensus 13 ~G~~vi~~~~~~~k~~~~~~~Ga~~~~-~~~~~~~~~~i~~~~~~~~~d~vid~~g-----~----~~~~~~~~~~l~~~ 82 (130)
T PF00107_consen 13 MGAKVIATDRSEEKLELAKELGADHVI-DYSDDDFVEQIRELTGGRGVDVVIDCVG-----S----GDTLQEAIKLLRPG 82 (130)
T ss_dssp TTSEEEEEESSHHHHHHHHHTTESEEE-ETTTSSHHHHHHHHTTTSSEEEEEESSS-----S----HHHHHHHHHHEEEE
T ss_pred cCCEEEEEECCHHHHHHHHhhcccccc-cccccccccccccccccccceEEEEecC-----c----HHHHHHHHHHhccC
Confidence 348999999999999999998754432 22221 1 22347999987643 1 46888999999999
Q ss_pred cEEEEEEcCc
Q 016157 213 SLVLITVWAV 222 (394)
Q Consensus 213 G~lli~~~~~ 222 (394)
|++++.....
T Consensus 83 G~~v~vg~~~ 92 (130)
T PF00107_consen 83 GRIVVVGVYG 92 (130)
T ss_dssp EEEEEESSTS
T ss_pred CEEEEEEccC
Confidence 9999987654
|
1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: |
| >cd08232 idonate-5-DH L-idonate 5-dehydrogenase | Back alignment and domain information |
|---|
Probab=83.08 E-value=4.4 Score=39.43 Aligned_cols=90 Identities=18% Similarity=0.199 Sum_probs=58.0
Q ss_pred CCCEEEEEcCcc-Ccccc---cCCCc-EEEEEeCCHHHHHHHHHcCCeE-EEee---cCCCCCCCCCccEEEehhhhhhc
Q 016157 122 SGSLVLDAGCGN-GKYLG---LNPDC-FFVGCDISPSLIKICVDRGHEV-LVAD---AVNLPYRSDFGDAAISIAVLHHL 192 (394)
Q Consensus 122 ~g~~VLDvGCG~-G~~l~---~~~~~-~v~gvD~S~~~l~~a~~~~i~~-~~~D---~~~lp~~~~~fD~Vi~~~vl~hl 192 (394)
++.+||-.|||. |..+. ...+. .+++++.++...+.+++.+... +..+ +..+....+.+|+++.....
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~~g~~~vi~~~~~~~~~~~~~~~~vd~vld~~g~--- 241 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARAMGADETVNLARDPLAAYAADKGDFDVVFEASGA--- 241 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHcCCCEEEcCCchhhhhhhccCCCccEEEECCCC---
Confidence 788899888764 44331 24466 7999999999888877766432 2111 11121122348998865331
Q ss_pred CChhHHHHHHHHHHhccccCcEEEEEEc
Q 016157 193 STESRRKKAIEELVRVVKKGSLVLITVW 220 (394)
Q Consensus 193 ~~~~~~~~~L~ei~r~LkpGG~lli~~~ 220 (394)
...++.+.+.|+++|+++....
T Consensus 242 ------~~~~~~~~~~L~~~G~~v~~g~ 263 (339)
T cd08232 242 ------PAALASALRVVRPGGTVVQVGM 263 (339)
T ss_pred ------HHHHHHHHHHHhcCCEEEEEec
Confidence 2457788999999999987653
|
L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai |
| >PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised | Back alignment and domain information |
|---|
Probab=82.95 E-value=1.5 Score=44.37 Aligned_cols=61 Identities=16% Similarity=0.124 Sum_probs=51.3
Q ss_pred CCeEEEeecCCCC--CCCCCccEEEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCcc
Q 016157 162 GHEVLVADAVNLP--YRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVE 223 (394)
Q Consensus 162 ~i~~~~~D~~~lp--~~~~~fD~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~~ 223 (394)
++++..+++.+.. .+++++|.++....+.++++.. ..+.++++.+.++|||++++-..+..
T Consensus 276 rv~i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm~~~~-~~~~~~~l~~~~~pgaRV~~Rsa~~~ 338 (380)
T PF11899_consen 276 RVRIHTDSIEEVLRRLPPGSFDRFVLSDHMDWMDPEQ-LNEEWQELARTARPGARVLWRSAAVP 338 (380)
T ss_pred eEEEEeccHHHHHHhCCCCCeeEEEecchhhhCCHHH-HHHHHHHHHHHhCCCCEEEEeeCCCC
Confidence 5788888887642 4578999999999999998755 89999999999999999999876543
|
This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length. |
| >KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=82.88 E-value=1.6 Score=44.88 Aligned_cols=96 Identities=23% Similarity=0.224 Sum_probs=63.5
Q ss_pred CEEEEEcCccCccccc------CCCcEEEEEeCCHHHHHHHHHc-------CCeEEEe-ecC--CCCCC-CCCccEEEeh
Q 016157 124 SLVLDAGCGNGKYLGL------NPDCFFVGCDISPSLIKICVDR-------GHEVLVA-DAV--NLPYR-SDFGDAAISI 186 (394)
Q Consensus 124 ~~VLDvGCG~G~~l~~------~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~-D~~--~lp~~-~~~fD~Vi~~ 186 (394)
..++|+|.|.|.-..+ ...-.++-||.|..|+...... +-.++.. -+. .+|.. .+.||+|++.
T Consensus 202 d~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~~~v~~~~~~r~~~pi~~~~~yDlvi~a 281 (491)
T KOG2539|consen 202 DLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGSHIGEPIVRKLVFHRQRLPIDIKNGYDLVICA 281 (491)
T ss_pred HHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChhhcCchhccccchhcccCCCCcccceeeEEee
Confidence 4688899987764321 2234789999999998877654 1112222 111 24433 3459999999
Q ss_pred hhhhhcCChhHHHHHHHHHHhc-cccCcEEEEEE
Q 016157 187 AVLHHLSTESRRKKAIEELVRV-VKKGSLVLITV 219 (394)
Q Consensus 187 ~vl~hl~~~~~~~~~L~ei~r~-LkpGG~lli~~ 219 (394)
+.++++.+...+....++..+. .++||.+++..
T Consensus 282 h~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe 315 (491)
T KOG2539|consen 282 HKLHELGSKFSRLDVPESLWRKTDRSGYFLVIIE 315 (491)
T ss_pred eeeeccCCchhhhhhhHHHHHhccCCCceEEEEe
Confidence 9999998876666666666554 57777777764
|
|
| >cd08234 threonine_DH_like L-threonine dehydrogenase | Back alignment and domain information |
|---|
Probab=82.80 E-value=5.4 Score=38.58 Aligned_cols=95 Identities=17% Similarity=0.107 Sum_probs=61.3
Q ss_pred cCCCCCCEEEEEcCcc-Cccc---ccCCCcE-EEEEeCCHHHHHHHHHcCCeEEEeecCC-C----CCCCCCccEEEehh
Q 016157 118 NSLPSGSLVLDAGCGN-GKYL---GLNPDCF-FVGCDISPSLIKICVDRGHEVLVADAVN-L----PYRSDFGDAAISIA 187 (394)
Q Consensus 118 ~~l~~g~~VLDvGCG~-G~~l---~~~~~~~-v~gvD~S~~~l~~a~~~~i~~~~~D~~~-l----p~~~~~fD~Vi~~~ 187 (394)
..+.++.+||-+|+|. |..+ ....+.. +++++.+++..+.+++.++..+...... . ......+|+++...
T Consensus 155 ~~~~~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~vd~v~~~~ 234 (334)
T cd08234 155 LGIKPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKKLGATETVDPSREDPEAQKEDNPYGFDVVIEAT 234 (334)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCeEEecCCCCCHHHHHHhcCCCCcEEEECC
Confidence 4567888999998642 3332 1245565 8999999999888877776532222111 1 01235689998642
Q ss_pred hhhhcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 016157 188 VLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 221 (394)
Q Consensus 188 vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~ 221 (394)
. ....+.++.++|+++|+++...+.
T Consensus 235 ~---------~~~~~~~~~~~l~~~G~~v~~g~~ 259 (334)
T cd08234 235 G---------VPKTLEQAIEYARRGGTVLVFGVY 259 (334)
T ss_pred C---------ChHHHHHHHHHHhcCCEEEEEecC
Confidence 1 135678888999999999877543
|
L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. |
| >PRK10742 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=82.27 E-value=2.9 Score=39.71 Aligned_cols=73 Identities=14% Similarity=0.112 Sum_probs=49.6
Q ss_pred CCCCCC--EEEEEcCccCccc--ccCCCcEEEEEeCCHHHHHHHHHc----------------CCeEEEeecCCC-CCCC
Q 016157 119 SLPSGS--LVLDAGCGNGKYL--GLNPDCFFVGCDISPSLIKICVDR----------------GHEVLVADAVNL-PYRS 177 (394)
Q Consensus 119 ~l~~g~--~VLDvGCG~G~~l--~~~~~~~v~gvD~S~~~l~~a~~~----------------~i~~~~~D~~~l-p~~~ 177 (394)
.+++|. +|||+=+|.|... ....|+.|+++|.++.+....++. +++++.+|..+. .-..
T Consensus 83 glk~g~~p~VLD~TAGlG~Da~~las~G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~~~ 162 (250)
T PRK10742 83 GIKGDYLPDVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDIT 162 (250)
T ss_pred CCCCCCCCEEEECCCCccHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhhCC
Confidence 456666 8999999999963 235688899999999765443321 355666776553 2123
Q ss_pred CCccEEEehhhhhh
Q 016157 178 DFGDAAISIAVLHH 191 (394)
Q Consensus 178 ~~fD~Vi~~~vl~h 191 (394)
.+||+|+.--.+.|
T Consensus 163 ~~fDVVYlDPMfp~ 176 (250)
T PRK10742 163 PRPQVVYLDPMFPH 176 (250)
T ss_pred CCCcEEEECCCCCC
Confidence 47999988665555
|
|
| >COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=82.02 E-value=8.3 Score=38.37 Aligned_cols=94 Identities=18% Similarity=0.258 Sum_probs=65.5
Q ss_pred CCCCEEEEEcCcc-Cccc----ccCCCcEEEEEeCCHHHHHHHHHc-CCeEEEeecCC-C-----CCC-CCCccEEEehh
Q 016157 121 PSGSLVLDAGCGN-GKYL----GLNPDCFFVGCDISPSLIKICVDR-GHEVLVADAVN-L-----PYR-SDFGDAAISIA 187 (394)
Q Consensus 121 ~~g~~VLDvGCG~-G~~l----~~~~~~~v~gvD~S~~~l~~a~~~-~i~~~~~D~~~-l-----p~~-~~~fD~Vi~~~ 187 (394)
.++.+|+=+|||+ |.++ +......|+.+|+++.-++.|++. +...+.....+ . ... ...+|+++-..
T Consensus 167 ~~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~ 246 (350)
T COG1063 167 RPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAV 246 (350)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECC
Confidence 4455999999997 4432 224456899999999999999984 54444333221 0 111 23689998876
Q ss_pred hhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCcc
Q 016157 188 VLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVE 223 (394)
Q Consensus 188 vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~~ 223 (394)
. . ..++..+.++++|||++.+.-....
T Consensus 247 G-----~----~~~~~~ai~~~r~gG~v~~vGv~~~ 273 (350)
T COG1063 247 G-----S----PPALDQALEALRPGGTVVVVGVYGG 273 (350)
T ss_pred C-----C----HHHHHHHHHHhcCCCEEEEEeccCC
Confidence 5 1 3588999999999999998876543
|
|
| >COG3129 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=81.95 E-value=2.7 Score=39.51 Aligned_cols=70 Identities=17% Similarity=0.174 Sum_probs=47.8
Q ss_pred CCCEEEEEcCccCcccc----cCCCcEEEEEeCCHHHHHHHHHc---------CCeEEEe-ecCC----CCCCCCCccEE
Q 016157 122 SGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR---------GHEVLVA-DAVN----LPYRSDFGDAA 183 (394)
Q Consensus 122 ~g~~VLDvGCG~G~~l~----~~~~~~v~gvD~S~~~l~~a~~~---------~i~~~~~-D~~~----lp~~~~~fD~V 183 (394)
++.++||||.|.--.-. ..-+++.+|.|+++..++.|+.. .+++... |-.. +--..+.||+.
T Consensus 78 ~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~~~~if~giig~nE~yd~t 157 (292)
T COG3129 78 KNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKDSDAIFNGIIGKNERYDAT 157 (292)
T ss_pred CceEEEeeccCcccccccccceeecceeecCccCHHHHHHHHHHHHcCcchhhheeEEeccCccccccccccccceeeeE
Confidence 55789999988765322 25678999999999999988764 2444322 2211 11235789999
Q ss_pred Eehhhhhh
Q 016157 184 ISIAVLHH 191 (394)
Q Consensus 184 i~~~vl~h 191 (394)
+|+--+|-
T Consensus 158 lCNPPFh~ 165 (292)
T COG3129 158 LCNPPFHD 165 (292)
T ss_pred ecCCCcch
Confidence 99988774
|
|
| >cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy) | Back alignment and domain information |
|---|
Probab=81.43 E-value=4.7 Score=41.27 Aligned_cols=98 Identities=17% Similarity=0.175 Sum_probs=65.2
Q ss_pred cchHHHHHHHcCCCCCCEEEEEcCcc-Cccc---ccCCCcEEEEEeCCHHHHHHHHHcCCeEEEeecCCCCCCCCCccEE
Q 016157 108 AKWPKVATFLNSLPSGSLVLDAGCGN-GKYL---GLNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAA 183 (394)
Q Consensus 108 ~~~~~l~~~l~~l~~g~~VLDvGCG~-G~~l---~~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~lp~~~~~fD~V 183 (394)
..|..+.......-+|.+|+=+|+|. |... ....|..|+.+|+++.-+..|+..|...... .+. . ..+|+|
T Consensus 187 s~~~~i~r~t~~~l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~~G~~~~~~--~e~-v--~~aDVV 261 (413)
T cd00401 187 SLIDGIKRATDVMIAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAMEGYEVMTM--EEA-V--KEGDIF 261 (413)
T ss_pred hhHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHhcCCEEccH--HHH-H--cCCCEE
Confidence 34555555555556799999999996 3322 1245678999999998888888877754422 111 1 347999
Q ss_pred EehhhhhhcCChhHHHHHHHH-HHhccccCcEEEEEE
Q 016157 184 ISIAVLHHLSTESRRKKAIEE-LVRVVKKGSLVLITV 219 (394)
Q Consensus 184 i~~~vl~hl~~~~~~~~~L~e-i~r~LkpGG~lli~~ 219 (394)
+.... . ..++.. ..+.+|+||+++...
T Consensus 262 I~atG-----~----~~~i~~~~l~~mk~GgilvnvG 289 (413)
T cd00401 262 VTTTG-----N----KDIITGEHFEQMKDGAIVCNIG 289 (413)
T ss_pred EECCC-----C----HHHHHHHHHhcCCCCcEEEEeC
Confidence 87532 2 234444 588999999987765
|
The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+. |
| >COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=81.42 E-value=3.1 Score=41.61 Aligned_cols=90 Identities=24% Similarity=0.221 Sum_probs=64.4
Q ss_pred CCEEEEEcCccCc----ccccCCCcEEEEEeCCHHHHHHHHHc---C----CeEEEeecCCCCCC-CCCccEEEehhhhh
Q 016157 123 GSLVLDAGCGNGK----YLGLNPDCFFVGCDISPSLIKICVDR---G----HEVLVADAVNLPYR-SDFGDAAISIAVLH 190 (394)
Q Consensus 123 g~~VLDvGCG~G~----~l~~~~~~~v~gvD~S~~~l~~a~~~---~----i~~~~~D~~~lp~~-~~~fD~Vi~~~vl~ 190 (394)
..+|||.=+|+|. ++...+...++.-|+|+.+++.++++ | ...+..|+..+-.. ...||+|=.-
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~~~~~v~n~DAN~lm~~~~~~fd~IDiD---- 128 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSGEDAEVINKDANALLHELHRAFDVIDID---- 128 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCcccceeecchHHHHHHhcCCCccEEecC----
Confidence 4689999999997 33334444899999999999999887 2 34455565443221 3677777431
Q ss_pred hcCChhHHHHHHHHHHhccccCcEEEEEE
Q 016157 191 HLSTESRRKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 191 hl~~~~~~~~~L~ei~r~LkpGG~lli~~ 219 (394)
-+.+ +..++..+.+.++.||.+.++.
T Consensus 129 PFGS---PaPFlDaA~~s~~~~G~l~vTA 154 (380)
T COG1867 129 PFGS---PAPFLDAALRSVRRGGLLCVTA 154 (380)
T ss_pred CCCC---CchHHHHHHHHhhcCCEEEEEe
Confidence 2233 6788999999999999999985
|
|
| >PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2 | Back alignment and domain information |
|---|
Probab=80.91 E-value=2 Score=43.46 Aligned_cols=91 Identities=24% Similarity=0.195 Sum_probs=62.7
Q ss_pred CCCEEEEEcCccCc----ccccCCC-cEEEEEeCCHHHHHHHHHc---------CCeEEEeecCCCC-CCCCCccEEEeh
Q 016157 122 SGSLVLDAGCGNGK----YLGLNPD-CFFVGCDISPSLIKICVDR---------GHEVLVADAVNLP-YRSDFGDAAISI 186 (394)
Q Consensus 122 ~g~~VLDvGCG~G~----~l~~~~~-~~v~gvD~S~~~l~~a~~~---------~i~~~~~D~~~lp-~~~~~fD~Vi~~ 186 (394)
...+|||.=+|+|. |+...++ ..|+.-|+|+.+++..+++ .+++...|+..+- .....||+|=.-
T Consensus 49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~~~~~fD~IDlD 128 (377)
T PF02005_consen 49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLYSRQERFDVIDLD 128 (377)
T ss_dssp S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHCHSTT-EEEEEE-
T ss_pred CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhhhccccCCEEEeC
Confidence 34689999999997 3333233 4899999999999998887 1456677776542 246789998642
Q ss_pred hhhhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 016157 187 AVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 187 ~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~ 219 (394)
- +.+ +..+|..+.+.+|.||.|.++.
T Consensus 129 P----fGS---p~pfldsA~~~v~~gGll~vTa 154 (377)
T PF02005_consen 129 P----FGS---PAPFLDSALQAVKDGGLLCVTA 154 (377)
T ss_dssp -----SS-----HHHHHHHHHHEEEEEEEEEEE
T ss_pred C----CCC---ccHhHHHHHHHhhcCCEEEEec
Confidence 1 223 6789999999999999999985
|
1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: |
| >cd08230 glucose_DH Glucose dehydrogenase | Back alignment and domain information |
|---|
Probab=80.51 E-value=6.8 Score=38.60 Aligned_cols=91 Identities=12% Similarity=-0.028 Sum_probs=60.0
Q ss_pred CCCCCEEEEEcCcc-Cccc---ccCCCcEEEEEeC---CHHHHHHHHHcCCeEEEeecCCCC----CCCCCccEEEehhh
Q 016157 120 LPSGSLVLDAGCGN-GKYL---GLNPDCFFVGCDI---SPSLIKICVDRGHEVLVADAVNLP----YRSDFGDAAISIAV 188 (394)
Q Consensus 120 l~~g~~VLDvGCG~-G~~l---~~~~~~~v~gvD~---S~~~l~~a~~~~i~~~~~D~~~lp----~~~~~fD~Vi~~~v 188 (394)
..+|.+||=+|+|. |.++ ....+..+++++. ++.-++.+++.+...+ +..+.. .....+|+|+-...
T Consensus 170 ~~~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~Ga~~v--~~~~~~~~~~~~~~~~d~vid~~g 247 (355)
T cd08230 170 TWNPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEELGATYV--NSSKTPVAEVKLVGEFDLIIEATG 247 (355)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEe--cCCccchhhhhhcCCCCEEEECcC
Confidence 35788999999863 2222 1245668999987 6788888888877653 222111 01245888887643
Q ss_pred hhhcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 016157 189 LHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 221 (394)
Q Consensus 189 l~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~ 221 (394)
. ...+.+..++|++||++++.-..
T Consensus 248 -----~----~~~~~~~~~~l~~~G~~v~~G~~ 271 (355)
T cd08230 248 -----V----PPLAFEALPALAPNGVVILFGVP 271 (355)
T ss_pred -----C----HHHHHHHHHHccCCcEEEEEecC
Confidence 1 24678889999999998876543
|
Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai |
| >cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members | Back alignment and domain information |
|---|
Probab=80.29 E-value=5.6 Score=37.38 Aligned_cols=92 Identities=16% Similarity=0.151 Sum_probs=57.6
Q ss_pred cCCCCCCEEEEEcCcc-Ccccc---cCCCcE-EEEEeCCHHHHHHHHHcC-CeEEEeecCCCCCCCCCccEEEehhhhhh
Q 016157 118 NSLPSGSLVLDAGCGN-GKYLG---LNPDCF-FVGCDISPSLIKICVDRG-HEVLVADAVNLPYRSDFGDAAISIAVLHH 191 (394)
Q Consensus 118 ~~l~~g~~VLDvGCG~-G~~l~---~~~~~~-v~gvD~S~~~l~~a~~~~-i~~~~~D~~~lp~~~~~fD~Vi~~~vl~h 191 (394)
..+.++.+||=.|+|. |..+. ...+.. +++++.+++.++.+++.+ ..-+. +...-......+|+++....
T Consensus 93 ~~~~~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~d~vl~~~~--- 168 (277)
T cd08255 93 AEPRLGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEALGPADPVA-ADTADEIGGRGADVVIEASG--- 168 (277)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHHHcCCCcccc-ccchhhhcCCCCCEEEEccC---
Confidence 4567888899888764 33321 234556 999999999888888776 11110 00100012345898886422
Q ss_pred cCChhHHHHHHHHHHhccccCcEEEEEE
Q 016157 192 LSTESRRKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 192 l~~~~~~~~~L~ei~r~LkpGG~lli~~ 219 (394)
....+..+.+.|+++|+++...
T Consensus 169 ------~~~~~~~~~~~l~~~g~~~~~g 190 (277)
T cd08255 169 ------SPSALETALRLLRDRGRVVLVG 190 (277)
T ss_pred ------ChHHHHHHHHHhcCCcEEEEEe
Confidence 1246777888999999998764
|
This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 394 | ||||
| 3ege_A | 261 | Crystal Structure Of Putative Methyltransferase Fro | 1e-07 |
| >pdb|3EGE|A Chain A, Crystal Structure Of Putative Methyltransferase From Antibiotic Biosynthesis Pathway (Yp_324569.1) From Anabaena Variabilis Atcc 29413 At 2.40 A Resolution Length = 261 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} Length = 261 | Back alignment and structure |
|---|
Score = 139 bits (351), Expect = 6e-39
Identities = 41/178 (23%), Positives = 72/178 (40%), Gaps = 11/178 (6%)
Query: 94 VYDAIAPHFSSTRFAKWPKVATFLNSL--PSGSLVLDAGCGNGKYLGL--NPDCFFVGCD 149
+Y++I +S TR V +N L P GS++ D G G G Y N F +
Sbjct: 4 IYNSIGKQYSQTRVPDIRIVNAIINLLNLPKGSVIADIGAGTGGYSVALANQGLFVYAVE 63
Query: 150 ISPSLIKICVDR-GHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRV 208
S + + V E A NL D ISI +HH S + + +E+ R+
Sbjct: 64 PSIVMRQQAVVHPQVEWFTGYAENLALPDKSVDGVISILAIHHFSHLEK---SFQEMQRI 120
Query: 209 VKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGPGSPRVRSPSA--RTLESIP 264
++ G++VL+ + + + + + P + ++ R +E+IP
Sbjct: 121 IRDGTIVLL-TFDIRLAQRIWLYDYFPFLWEDALRFLPLDEQINLLQENTKRRVEAIP 177
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 Length = 219 | Back alignment and structure |
|---|
Score = 89.1 bits (221), Expect = 9e-21
Identities = 34/184 (18%), Positives = 72/184 (39%), Gaps = 21/184 (11%)
Query: 85 ELEKKYVHRVYDAIAP----HFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGKYLGLN 140
++ +++ F RFA ++ LP G ++ G G G++
Sbjct: 7 HHHHHHMWHIFERFVNEYERWFLVHRFAYLSELQAVKCLLPEGR-GVEIGVGTGRFAVPL 65
Query: 141 PDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKK 200
+G + S + +I RG VL A NLP + + D A+ + + + ++
Sbjct: 66 KIK--IGVEPSERMAEIARKRGVFVLKGTAENLPLKDESFDFALMVTTICFV---DDPER 120
Query: 201 AIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGPGSPR-VRSPSART 259
A++E R++KKG +++ + + + L ++Y + + R S
Sbjct: 121 ALKEAYRILKKGGYLIVGIVD----------RESFLGREYEKNKEKSVFYKNARFFSTEE 170
Query: 260 LESI 263
L +
Sbjct: 171 LMDL 174
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} Length = 209 | Back alignment and structure |
|---|
Score = 88.0 bits (218), Expect = 2e-20
Identities = 30/159 (18%), Positives = 54/159 (33%), Gaps = 12/159 (7%)
Query: 102 FSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGK---YLGLNPDCFFVGCDISPSLIKIC 158
+ R + + + N VLD G G + + G +IS +K
Sbjct: 3 KTIIRQPQLYRFLKYCNESNLDKTVLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKA 62
Query: 159 VDRGHE------VLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKG 212
+ E + D LP++ + S + H+ K+AI+E+ RV+K G
Sbjct: 63 ENFSRENNFKLNISKGDIRKLPFKDESMSFVYSYGTIFHMRKND-VKEAIDEIKRVLKPG 121
Query: 213 SLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGPGSPR 251
L I + E + K +++ G
Sbjct: 122 GLACINFLTTKDERYNKGEKIGEGE--FLQLERGEKVIH 158
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} Length = 211 | Back alignment and structure |
|---|
Score = 86.0 bits (213), Expect = 9e-20
Identities = 25/136 (18%), Positives = 52/136 (38%), Gaps = 11/136 (8%)
Query: 94 VYDAIAPHF------SSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGKYLGLNPDCFFVG 147
+ ++A + + + LP G +L+ G G G +L P VG
Sbjct: 2 PFASLAEAYEAWYGTPLGAYVIAEEERALKGLLPPGESLLEVGAGTGYWLRRLPYPQKVG 61
Query: 148 CDISPSLIKICVDRGHEV--LVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEEL 205
+ S +++ + R E + A LP+ + D + L + ++ + E
Sbjct: 62 VEPSEAMLAVGRRRAPEATWVRAWGEALPFPGESFDVVLLFTTLEFV---EDVERVLLEA 118
Query: 206 VRVVKKGSLVLITVWA 221
RV++ G +++ V
Sbjct: 119 RRVLRPGGALVVGVLE 134
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} Length = 211 | Back alignment and structure |
|---|
Score = 82.2 bits (203), Expect = 2e-18
Identities = 34/140 (24%), Positives = 54/140 (38%), Gaps = 14/140 (10%)
Query: 93 RVYDAIAPHFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNG---KYL---GLNPDCFFV 146
R Y A ++ R + + FL LP+G+ +L+ GCG G + + G +
Sbjct: 15 RFYRGNATAYAE-RQPRSATLTKFLGELPAGAKILELGCGAGYQAEAMLAAGFDV----D 69
Query: 147 GCDISPSLIKICVDR-GHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEEL 205
D SP L R G V L + DA + A L H+ ++ +
Sbjct: 70 ATDGSPELAAEASRRLGRPVRTMLFHQLDAIDAY-DAVWAHACLLHVP-RDELADVLKLI 127
Query: 206 VRVVKKGSLVLITVWAVEQE 225
R +K G L + + E E
Sbjct: 128 WRALKPGGLFYASYKSGEGE 147
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 Length = 260 | Back alignment and structure |
|---|
Score = 80.3 bits (198), Expect = 2e-17
Identities = 39/154 (25%), Positives = 69/154 (44%), Gaps = 13/154 (8%)
Query: 76 SSSSIKSTPELEKKYVHRVYDAIAPH----FSSTRFAKWPKV--ATFLNSLPSGSLVLDA 129
S I K YD IA + + ++ + ++ + L + VLD
Sbjct: 2 GSDKIHHHHHHMKLRSWEFYDRIARAYDSMYETPKWKLYHRLIGSFLEEYLKNPCRVLDL 61
Query: 130 GCGNGKY-LGLNPDCFFV-GCDISPSLIKICVDRG-HEVLVADAVNLPYRSDFGDAAISI 186
G G GK+ L L F V D S ++++ ++G V+ A A +LP+ S +A +++
Sbjct: 62 GGGTGKWSLFLQERGFEVVLVDPSKEMLEVAREKGVKNVVEAKAEDLPFPSGAFEAVLAL 121
Query: 187 A-VLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219
VL ++ + KA E+ RV+ L++ TV
Sbjct: 122 GDVLSYVE---NKDKAFSEIRRVLVPDGLLIATV 152
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Length = 276 | Back alignment and structure |
|---|
Score = 80.3 bits (198), Expect = 2e-17
Identities = 41/167 (24%), Positives = 63/167 (37%), Gaps = 21/167 (12%)
Query: 89 KYVHRVYDAIAPHFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGKYL----GLNPDCF 144
+YVH Y S + K+ P G+ VL+AGCG G NPD
Sbjct: 5 EYVHG-YSEREALRLSEQAETLEKLLHHDTVYPPGAKVLEAGCGIGAQTVILAKNNPDAE 63
Query: 145 FVGCDISPSLIKI----CVDRGH---EVLVADAVNLPYRSDFGDAAISIAVLHHLSTESR 197
DISP ++ G + L A+ +LP+ D VL HL
Sbjct: 64 ITSIDISPESLEKARENTEKNGIKNVKFLQANIFSLPFEDSSFDHIFVCFVLEHL---QS 120
Query: 198 RKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEW 244
++A++ L +V+K G + + + P +K +E W
Sbjct: 121 PEEALKSLKKVLKPGGTITVIEGDHGS------CYFHPEGKKAIEAW 161
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.70A {Bacillus thuringiensis} Length = 242 | Back alignment and structure |
|---|
Score = 79.5 bits (196), Expect = 3e-17
Identities = 31/146 (21%), Positives = 59/146 (40%), Gaps = 15/146 (10%)
Query: 88 KKYVHRVYDAIAPHFSSTRFAKWPK------VATFLNSLPSGSLVLDAGCGNGKY-LGLN 140
+ + +D+ A ++ W + F + + VLD GCG+G L+
Sbjct: 13 HESAEKKWDSSAEFWNQNSQEMWDSGSRSTIIPFFEQYVKKEAEVLDVGCGDGYGTYKLS 72
Query: 141 PDCFFV-GCDISPSLIKICVDRGH----EVLVADAVNLPYRSDFGDAAISIAVLHHLSTE 195
+ G DIS +I+ +RG + D +LP+ ++ +A ++I L
Sbjct: 73 RTGYKAVGVDISEVMIQKGKERGEGPDLSFIKGDLSSLPFENEQFEAIMAINSLEWT--- 129
Query: 196 SRRKKAIEELVRVVKKGSLVLITVWA 221
+A+ E+ RV+K I +
Sbjct: 130 EEPLRALNEIKRVLKSDGYACIAILG 155
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} Length = 220 | Back alignment and structure |
|---|
Score = 77.2 bits (190), Expect = 1e-16
Identities = 25/142 (17%), Positives = 52/142 (36%), Gaps = 18/142 (12%)
Query: 91 VHRVYDAIAPHFSSTR----------FAKWPKVATFLNSLPSGSLVLDAGCGNGKYLGL- 139
+ ++D A + S FA + + + + G+ VL+ G G G
Sbjct: 5 FNGLFDEWAHTYDSFVQGEDIQYKEVFAHYEDILEDVVNKSFGN-VLEFGVGTGNLTNKL 63
Query: 140 -NPDCFFVGCDISPSLIKICVDRGH---EVLVADAVNLPYRSDFGDAAISIAVLHHLSTE 195
G + S + I ++ + D ++ + D +S HHL T+
Sbjct: 64 LLAGRTVYGIEPSREMRMIAKEKLPKEFSITEGDFLSFEVPTSI-DTIVSTYAFHHL-TD 121
Query: 196 SRRKKAIEELVRVVKKGSLVLI 217
+ AI + +++ KG ++
Sbjct: 122 DEKNVAIAKYSQLLNKGGKIVF 143
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 227 | Back alignment and structure |
|---|
Score = 76.9 bits (189), Expect = 2e-16
Identities = 34/169 (20%), Positives = 56/169 (33%), Gaps = 18/169 (10%)
Query: 95 YDAIAPHFSSTRFAKWPKVATFLNS-----LPSGSLVLDAGCGNGKYLGL--NPDCFFVG 147
Y + P ++ ++ L + VLD CG G + L + VG
Sbjct: 6 YYRVFPTYTDINSQEYRSRIETLEPLLMKYMKKRGKVLDLACGVGGFSFLLEDYGFEVVG 65
Query: 148 CDISPSLIKI----CVDRGHEV--LVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKA 201
DIS +I+ R V +V DA L + D I I + H +
Sbjct: 66 VDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIVHF-EPLELNQV 124
Query: 202 IEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGPGSP 250
+E+ RV+K ++ + + L + WI P
Sbjct: 125 FKEVRRVLKPSGKFIMYFTDLRELLPRLKESLV----VGQKYWISKVIP 169
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} Length = 234 | Back alignment and structure |
|---|
Score = 76.0 bits (187), Expect = 4e-16
Identities = 24/134 (17%), Positives = 49/134 (36%), Gaps = 11/134 (8%)
Query: 93 RVYDAIAPHFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNG----KYLGLNPDCFFVGC 148
YD F + + + +LD G G G + P+ F
Sbjct: 15 GKYDEQRRKFIPCFDDFYGVSVSIASVDTENPDILDLGAGTGLLSAFLMEKYPEATFTLV 74
Query: 149 DISPSLIKICVDRGH-----EVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIE 203
D+S +++I +R + + AD + + D +S +HHL E +K+ +
Sbjct: 75 DMSEKMLEIAKNRFRGNLKVKYIEADYSKYDFEEKY-DMVVSALSIHHLEDE-DKKELYK 132
Query: 204 ELVRVVKKGSLVLI 217
++K+ + +
Sbjct: 133 RSYSILKESGIFIN 146
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 203 | Back alignment and structure |
|---|
Score = 75.6 bits (186), Expect = 4e-16
Identities = 20/149 (13%), Positives = 45/149 (30%), Gaps = 18/149 (12%)
Query: 91 VHRVYDAIAPHFS---STRFAKWPKVATFLNSLP--SGSLVLDAGCGNGKY------LGL 139
V + Y + T + + ++LD G G G++ LG
Sbjct: 5 VSKAYSSPTFDAEALLGTVISAEDPDRVLIEPWATGVDGVILDVGSGTGRWTGHLASLGH 64
Query: 140 NPDCFFVGCDISPSLIKICVDR--GHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESR 197
G + + L+++ +L ++ L H+
Sbjct: 65 QI----EGLEPATRLVELARQTHPSVTFHHGTITDLSDSPKRWAGLLAWYSLIHM-GPGE 119
Query: 198 RKKAIEELVRVVKKGSLVLITVWAVEQED 226
A+ L V+ G +L++ ++ +
Sbjct: 120 LPDALVALRMAVEDGGGLLMSFFSGPSLE 148
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* Length = 218 | Back alignment and structure |
|---|
Score = 74.9 bits (184), Expect = 7e-16
Identities = 27/138 (19%), Positives = 42/138 (30%), Gaps = 11/138 (7%)
Query: 93 RVYDAIAPHFSSTR----FAKWPKVATFLNSLPSGSLVLDAGCGNGKYLG-LNPDCFFV- 146
Y A A + +T + P L + VL+ G G + L+ V
Sbjct: 13 SYYRARASEYDATFVPYMDSAAPAALERLRAGNIRGDVLELASGTGYWTRHLSGLADRVT 72
Query: 147 GCDISPSLIKICVDRGH---EVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIE 203
D S +I G E D + + DA L H+ + R + E
Sbjct: 73 ALDGSAEMIAEAGRHGLDNVEFRQQDLFDWTPDRQW-DAVFFAHWLAHV-PDDRFEAFWE 130
Query: 204 ELVRVVKKGSLVLITVWA 221
+ V G +V
Sbjct: 131 SVRSAVAPGGVVEFVDVT 148
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A Length = 263 | Back alignment and structure |
|---|
Score = 75.8 bits (186), Expect = 9e-16
Identities = 34/179 (18%), Positives = 67/179 (37%), Gaps = 17/179 (9%)
Query: 95 YDAIAPHFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISP 152
YD + H +A+ ++ + L+ G G G+ ++ D
Sbjct: 12 YDRLRAHPPEVAGQIATAMASAVHPKGEEPVFLELGVGTGRIALPLIARGYRYIALDADA 71
Query: 153 SLIKI------CVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELV 206
+++++ VDR +V+ ADA +P + I + + H + K + E +
Sbjct: 72 AMLEVFRQKIAGVDRKVQVVQADARAIPLPDESVHGVIVVHLWHLV---PDWPKVLAEAI 128
Query: 207 RVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGPGSPRVRSPSARTLESIPE 265
RV+K G +L W + L +++ G P R A+ L+ + E
Sbjct: 129 RVLKPGGALLE-GWDQAEASPEWT-----LQERWRAFAAEEGFPVERGLHAKRLKEVEE 181
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 195 | Back alignment and structure |
|---|
Score = 72.9 bits (179), Expect = 3e-15
Identities = 30/148 (20%), Positives = 48/148 (32%), Gaps = 17/148 (11%)
Query: 82 STPELEKKYVHRVYDAIAPHFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGKY----- 136
+ P + Y R + A A+ P G+ +LDAGCG G+
Sbjct: 11 NNPAHSENYAQRWRNLAAAGNDIYGEARL-----IDAMAPRGAKILDAGCGQGRIGGYLS 65
Query: 137 -LGLNPDCFFVGCDISPSLIKICVDR--GHEVLVADAVNLPYRSDFGDAAISIAVLHHLS 193
G + +G D+ P LI +V D D +S +
Sbjct: 66 KQGHDV----LGTDLDPILIDYAKQDFPEARWVVGDLSVDQISETDFDLIVSAGNVMGFL 121
Query: 194 TESRRKKAIEELVRVVKKGSLVLITVWA 221
E R+ A+ + R + +I A
Sbjct: 122 AEDGREPALANIHRALGADGRAVIGFGA 149
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} Length = 219 | Back alignment and structure |
|---|
Score = 71.0 bits (174), Expect = 2e-14
Identities = 28/186 (15%), Positives = 59/186 (31%), Gaps = 18/186 (9%)
Query: 89 KYVHRVYDAIAPHFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGK---YLGLNPDCFF 145
K + D I+ + + + + +G+ +D G G G L D
Sbjct: 11 KKGAKNMDEISKTLFAPIYPIIAENIINRFGITAGT-CIDIGSGPGALSIALAKQSDFSI 69
Query: 146 VGCDISPSLIKI----CVDRGH----EVLVADAVNLPYRSDFGDAAISIAVLHHLSTESR 197
D S + +I D +++ D N+P ++ D +S +
Sbjct: 70 RALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIPIEDNYADLIVSRGSVFFW---ED 126
Query: 198 RKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGPGSPRVRSPSA 257
A E+ R++K G I +E L + + +W + +
Sbjct: 127 VATAFREIYRILKSGGKTYIGGGFGNKE---LRDSISAEMIRKNPDWKEFNRKNISQENV 183
Query: 258 RTLESI 263
+++
Sbjct: 184 ERFQNV 189
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* Length = 267 | Back alignment and structure |
|---|
Score = 69.5 bits (170), Expect = 1e-13
Identities = 32/167 (19%), Positives = 62/167 (37%), Gaps = 24/167 (14%)
Query: 87 EKKYVHRVYDAIAPHF--SSTRF-----AKWPKVATFLNSLPSGSLVLDAGCGNGK---Y 136
E K +H + F + R K +F+++L SL+ D GCG G
Sbjct: 4 ENKTIHDFELNLICDFFSNMERQGPGSPEVTLKALSFIDNLTEKSLIADIGCGTGGQTMV 63
Query: 137 LGLNPDCFFVGCDISPSLIKICVDRGHE--------VLVADAVNLPYRSDFGDAAISIAV 188
L + G D I I + +V +LP+R++ D S
Sbjct: 64 LAGHVTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLPFRNEELDLIWSEGA 123
Query: 189 LHHLSTESRRKKAIEELVRVVKKGSLVLIT--VWAVEQEDKSLVTKW 233
++++ ++ + E + +KKG + ++ W ++ + W
Sbjct: 124 IYNIG----FERGLNEWRKYLKKGGYLAVSECSWFTDERPAEINDFW 166
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* Length = 257 | Back alignment and structure |
|---|
Score = 69.1 bits (169), Expect = 1e-13
Identities = 29/170 (17%), Positives = 66/170 (38%), Gaps = 18/170 (10%)
Query: 77 SSSIKSTPELEKKYVHRVYDAIAPHFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNG-- 134
S++ S + + ++ + + + A K +F+N L + + D GCG G
Sbjct: 2 SNNNTSIHDFDFSFICNYFKLLKRQGPGSPEA-TRKAVSFINELTDDAKIADIGCGTGGQ 60
Query: 135 -KYLGLNPDCFFVGCDISPSLIKICVDRGHE--------VLVADAVNLPYRSDFGDAAIS 185
+L G D+ P I+I + + + NLP++++ D S
Sbjct: 61 TLFLADYVKGQITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLPFQNEELDLIWS 120
Query: 186 IAVLHHLSTESRRKKAIEELVRVVKKGSLVLIT--VWAVEQEDKSLVTKW 233
++++ ++ + E + +KKG + ++ W + + W
Sbjct: 121 EGAIYNIG----FERGMNEWSKYLKKGGFIAVSEASWFTSERPAEIEDFW 166
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} PDB: 2gh1_A Length = 284 | Back alignment and structure |
|---|
Score = 69.2 bits (169), Expect = 2e-13
Identities = 21/110 (19%), Positives = 42/110 (38%), Gaps = 15/110 (13%)
Query: 120 LPSGSLVLDAGCGNGKYLGL-----NPDCFFVGCDISPSLIKI----CVDRGHEV--LVA 168
+ ++D GCG G + + G D +L+ ++ L
Sbjct: 20 ITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEG 79
Query: 169 DAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLIT 218
DA + + D AI A L H+ + + +++++ VKKG ++
Sbjct: 80 DATEIELNDKY-DIAICHAFLLHM---TTPETMLQKMIHSVKKGGKIICF 125
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} Length = 243 | Back alignment and structure |
|---|
Score = 68.3 bits (167), Expect = 2e-13
Identities = 25/122 (20%), Positives = 46/122 (37%), Gaps = 11/122 (9%)
Query: 106 RFAKWPKVATFLNSLPSGSLVLDAGCGNG---KYLGLNPDCFFVGCDISPSLI----KIC 158
A+WP + L + G ++D GCG G ++ + + +G D+S ++
Sbjct: 28 GAAEWPALRAMLPEVG-GLRIVDLGCGFGWFCRWAHEHGASYVLGLDLSEKMLARARAAG 86
Query: 159 VDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLIT 218
D G AD L D D A S LH++ + + + + G + +
Sbjct: 87 PDTGITYERADLDKLHLPQDSFDLAYSSLALHYV---EDVARLFRTVHQALSPGGHFVFS 143
Query: 219 VW 220
Sbjct: 144 TE 145
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} Length = 243 | Back alignment and structure |
|---|
Score = 68.2 bits (167), Expect = 2e-13
Identities = 34/142 (23%), Positives = 57/142 (40%), Gaps = 12/142 (8%)
Query: 93 RVYDAIAPHFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGKYLGLNPDCFFV-GCDIS 151
VYD + + +W VA L + G + D GCG G L D + V G D+S
Sbjct: 9 YVYDEL---MQDVPYPEW--VAWVLEQVEPGKRIADIGCGTGTATLLLADHYEVTGVDLS 63
Query: 152 PSLIKICVDRGHE------VLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEEL 205
+++I ++ E V D L I L++L TE+ K+ +
Sbjct: 64 EEMLEIAQEKAMETNRHVDFWVQDMRELELPEPVDAITILCDSLNYLQTEADVKQTFDSA 123
Query: 206 VRVVKKGSLVLITVWAVEQEDK 227
R++ G +L V + + +
Sbjct: 124 ARLLTDGGKLLFDVHSPYKMET 145
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} Length = 305 | Back alignment and structure |
|---|
Score = 68.2 bits (166), Expect = 5e-13
Identities = 25/152 (16%), Positives = 47/152 (30%), Gaps = 19/152 (12%)
Query: 82 STPELEKKYVHRVYDAIAPHFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGKYL---- 137
+ LE+ + R+ +A R + + L G +V CG L
Sbjct: 83 ALAPLERVFYERLPAVLATR---ERHGHFRRAL--QRHLRPGCVVASVPCGWMSELLALD 137
Query: 138 -GLNPDCFFVGCDISPSLIKIC--------VDRGHEVLVADAVNLPYRSDFGDAAISIAV 188
P VG D P + + + DA L R + D S +
Sbjct: 138 YSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDTREGY-DLLTSNGL 196
Query: 189 LHHLSTESRRKKAIEELVRVVKKGSLVLITVW 220
+ ++R + + +K G ++ +
Sbjct: 197 NIYEPDDARVTELYRRFWQALKPGGALVTSFL 228
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} Length = 170 | Back alignment and structure |
|---|
Score = 65.5 bits (160), Expect = 7e-13
Identities = 26/124 (20%), Positives = 49/124 (39%), Gaps = 14/124 (11%)
Query: 110 WPKVATFLNSLP--SGSLVLDAGCGNGKY----LGLNPDCFFVGCDISPSLIKICVDRGH 163
+ +L ++ +++D GCGNG Y L DI+ +K ++
Sbjct: 3 LERPEEYLPNIFEGKKGVIVDYGCGNGFYCKYLLEFATKL--YCIDINVIALKEVKEKFD 60
Query: 164 EVL-VADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAV 222
V+ ++D +P S D + H + ++ I E+ R++K V+I W
Sbjct: 61 SVITLSDPKEIPDNS-V-DFILFANSFHDMD---DKQHVISEVKRILKDDGRVIIIDWRK 115
Query: 223 EQED 226
E
Sbjct: 116 ENTG 119
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} Length = 279 | Back alignment and structure |
|---|
Score = 65.2 bits (159), Expect = 3e-12
Identities = 39/200 (19%), Positives = 68/200 (34%), Gaps = 21/200 (10%)
Query: 60 GESSIHSVSTGEDQRCSSSSIKSTPELEKKYVHRVYDAIAPHFSSTRFAKWPKVATFLNS 119
G IH E+ + + + + +Y S + + LN
Sbjct: 2 GSDKIHHHHHHENLYFQG--MTNLGTAKNFWDATLYQ----DKHSFVWQYGEDLLQLLNP 55
Query: 120 LPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR--GHEVLVADAVNLPY 175
P G +LD GCG G+ +G D + ++I+ VADA N
Sbjct: 56 QP-GEFILDLGCGTGQLTEKIAQSGAEVLGTDNAATMIEKARQNYPHLHFDVADARNFRV 114
Query: 176 RSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTP 235
DA S A+LH + + AI + + +K G + + K ++
Sbjct: 115 DKPL-DAVFSNAMLHWV---KEPEAAIASIHQALKSGGRFVAEFGG-KGNIKYILEAL-- 167
Query: 236 LTQKYVEEWIGPGSPRVRSP 255
E +G +P+ +P
Sbjct: 168 ---YNALETLGIHNPQALNP 184
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* Length = 263 | Back alignment and structure |
|---|
Score = 64.9 bits (158), Expect = 4e-12
Identities = 29/155 (18%), Positives = 56/155 (36%), Gaps = 16/155 (10%)
Query: 76 SSSSIKSTPELEKKYVHRVYDAIAPHFSSTRFAKWPKVATFLNSL-----PSGSLVLDAG 130
SS++ + + +YD + + + A L +L P + +LD
Sbjct: 4 SSATAGPQADYSGEIAE-LYDLVHQG-KGKDYHRE---AADLAALVRRHSPKAASLLDVA 58
Query: 131 CGNGKY-LGLNPDCFFV-GCDISPSLIKICVDRGHEV--LVADAVNLPYRSDFGDAAISI 186
CG G + L V G ++S ++ I R + D + F A +
Sbjct: 59 CGTGMHLRHLADSFGTVEGLELSADMLAIARRRNPDAVLHHGDMRDFSLGRRF-SAVTCM 117
Query: 187 A-VLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 220
+ HL+ ++ A+E V +V++ W
Sbjct: 118 FSSIGHLAGQAELDAALERFAAHVLPDGVVVVEPW 152
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} Length = 253 | Back alignment and structure |
|---|
Score = 64.6 bits (157), Expect = 5e-12
Identities = 20/133 (15%), Positives = 44/133 (33%), Gaps = 12/133 (9%)
Query: 95 YDAIAPHFSSTR-FAKWPKVATFLNSLPSGSLVLDAGCGNG---KYLGLNPDCFFVGCDI 150
Y + + +W ++ L VLD GCG G Y + +G D+
Sbjct: 17 YSQMPRSKEGLKAAGEWHELKKMLPDFN-QKTVLDLGCGFGWHCIYAAEHGAKKVLGIDL 75
Query: 151 SPSLIKI----CVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELV 206
S ++ ++ D + +S LH++++ +++
Sbjct: 76 SERMLTEAKRKTTSPVVCYEQKAIEDIAIEPDAYNVVLSSLALHYIAS---FDDICKKVY 132
Query: 207 RVVKKGSLVLITV 219
+K + +V
Sbjct: 133 INLKSSGSFIFSV 145
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* Length = 266 | Back alignment and structure |
|---|
Score = 64.0 bits (156), Expect = 8e-12
Identities = 24/109 (22%), Positives = 42/109 (38%), Gaps = 9/109 (8%)
Query: 120 LPSGSLVLDAGCGNG---KYLGLNPDCFFVGCDISPSLIKICVDRGH-----EVLVADAV 171
L S VLD G G G Y+ G DI +++ + +R D +
Sbjct: 53 LNENSKVLDIGSGLGGGCMYINEKYGAHTHGIDICSNIVNMANERVSGNNKIIFEANDIL 112
Query: 172 NLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 220
+ + D S + LS E+ + K ++ + +K +LIT +
Sbjct: 113 TKEFPENNFDLIYSRDAILALSLEN-KNKLFQKCYKWLKPTGTLLITDY 160
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 65.6 bits (159), Expect = 1e-11
Identities = 58/380 (15%), Positives = 105/380 (27%), Gaps = 100/380 (26%)
Query: 84 PELEKK----YVHRVY---DAIAPHFSSTRFAKWPKVATFLNSL-PSGSLVLDAGCGNGK 135
P + + R+Y A + +R + K+ L L P+ ++++D G+GK
Sbjct: 105 PSMMTRMYIEQRDRLYNDNQVFAKYNV-SRLQPYLKLRQALLELRPAKNVLIDGVLGSGK 163
Query: 136 ------------YLGLNPDCFF---VGCDISPSLI-----KIC--VDRGHEVLVADAVNL 173
F + SP + K+ +D + N+
Sbjct: 164 TWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNI 223
Query: 174 PYRSDFGDAAISIAVLHHLSTESRRKKAIEELV-------RVVKK---GSLVLIT----- 218
R A + L + + LV + +L+T
Sbjct: 224 KLRIHSIQAELR-----RLLKSKPYENCL--LVLLNVQNAKAWNAFNLSCKILLTTRFKQ 276
Query: 219 ----VWAVEQEDKSLVTKWTPLTQKYVEE----WIG------P-----GSPRVRSPSART 259
+ A SL LT V+ ++ P +PR S A +
Sbjct: 277 VTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAES 336
Query: 260 LESIPETEDNGSEEQGKEPKQSVPDKLWESI--SLTSQSEDD--------SVISQDVKII 309
+ T DN K DKL I SL + SV I
Sbjct: 337 IRDGLATWDNW--------KHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIP 388
Query: 310 TNQQEYFVPWH-LPYHRAEVSGASACALAN-GLAKKDDKKGAVVYNRYYHVFCDGELERL 367
T W + L L +K K+ + ++ + +++
Sbjct: 389 TILLSLI--WFDVIK---SDVMVVVNKLHKYSLVEKQPKESTI---SIPSIYLELKVKLE 440
Query: 368 ASDIDNAVVVDRFFDKSNWC 387
+ +VD + +
Sbjct: 441 NEYALHRSIVDHYNIPKTFD 460
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 59.1 bits (142), Expect = 1e-09
Identities = 67/440 (15%), Positives = 130/440 (29%), Gaps = 128/440 (29%)
Query: 6 VFDVLRATR-----CFHKFWEPFSVPITCGNCVFHPGISGTMREVKVKGASDFCTLGADG 60
DV + + F FW + NC + ++++ + ++ +
Sbjct: 167 ALDVCLSYKVQCKMDFKIFW------LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHS 220
Query: 61 ESSIHSVSTGEDQRCSSSSIKSTPELEKKYVHR------VYDA-IAPHFS-------STR 106
+ + + + + K Y + V +A F+ +TR
Sbjct: 221 SNIKLRIHSIQAE-------LRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTR 273
Query: 107 FAKWPKVATFLNSLPSGSLVLDAGCGN----------GKYLGLNPDCF-FVGCDISPSLI 155
F + V FL++ + + LD KYL P +P +
Sbjct: 274 FKQ---VTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRL 330
Query: 156 KICVDRGHEVLVADAVNL--PYRSDFGDA---AISIAVLHHLSTESRRKK----AI-EEL 205
I + + D + ++ D I + L+ L RK ++
Sbjct: 331 SIIAE-----SIRDGLATWDNWKHVNCDKLTTIIESS-LNVLEPAEYRKMFDRLSVFPPS 384
Query: 206 VRVVKKGSLVLITVWA--VEQEDKSLVTKWTPLTQK-YVEEWIGPGSPRVRSPSARTLES 262
+ +L +W ++ + +V K L + VE+ P + PS LE
Sbjct: 385 AHIPTI---LLSLIWFDVIKSDVMVVVNK---LHKYSLVEKQ--PKESTISIPS-IYLEL 435
Query: 263 IPETEDNGSEEQGKEPKQSVPDKLWES--ISLTSQSEDDSVISQDVKIITNQQEYFVPWH 320
+ E+ + ++ + + I T S+D D +YF H
Sbjct: 436 KVKLEN----------EYALHRSIVDHYNIPKTFDSDDLIPPYLD--------QYFY-SH 476
Query: 321 LPYH-----RAE--------------------VSGASACALANGLAKKDDKKGAVVYNRY 355
+ +H E + A + L K Y Y
Sbjct: 477 IGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLK---FYKPY 533
Query: 356 YHVFCD--GELERLASDIDN 373
CD + ERL + I +
Sbjct: 534 ---ICDNDPKYERLVNAILD 550
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} Length = 240 | Back alignment and structure |
|---|
Score = 63.0 bits (153), Expect = 1e-11
Identities = 29/129 (22%), Positives = 52/129 (40%), Gaps = 6/129 (4%)
Query: 95 YDAIAPHFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISP 152
Y F +R ++ ++ VLD GCG G++L L +G DI+
Sbjct: 14 YFLFEEKFRGSRELVKARLRRYIPYFKGCRRVLDIGCGRGEFLELCKEEGIESIGVDINE 73
Query: 153 SLIKICVDRGHEVLVADAVN--LPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVK 210
+IK C + + V+ +DA+ + D + + HL E R + + +K
Sbjct: 74 DMIKFCEGKFN-VVKSDAIEYLKSLPDKYLDGVMISHFVEHLDPE-RLFELLSLCYSKMK 131
Query: 211 KGSLVLITV 219
S ++I
Sbjct: 132 YSSYIVIES 140
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* Length = 199 | Back alignment and structure |
|---|
Score = 62.1 bits (151), Expect = 2e-11
Identities = 33/152 (21%), Positives = 48/152 (31%), Gaps = 29/152 (19%)
Query: 87 EKKYVHRVYDAIAPHFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNG---KYL---GLN 140
++ Y Y+ H +V + + G LD GCGNG YL G +
Sbjct: 7 DENYFTDKYELTRTH---------SEVLEAVKVVKPGK-TLDLGCGNGRNSLYLAANGYD 56
Query: 141 PDCFFVGCDISPSLI----KICVDRGH---EVLVADAVNLPYRSDFGDAAISIAVLHHLS 193
D + I +I V D NL + + D +S VL L
Sbjct: 57 ----VDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTFDRQY-DFILSTVVLMFLE 111
Query: 194 TESRRKKAIEELVRVVKKGSLVLITVWAVEQE 225
+ I + R K G LI +
Sbjct: 112 AK-TIPGLIANMQRCTKPGGYNLIVAAMDTAD 142
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} Length = 239 | Back alignment and structure |
|---|
Score = 62.5 bits (152), Expect = 2e-11
Identities = 27/161 (16%), Positives = 52/161 (32%), Gaps = 18/161 (11%)
Query: 93 RVYDAIAPHFSSTRFAKWPKVATFLNSL-----PSGSLVLDAGCGNGKY-LGLNPDCFFV 146
VYD R + A+ + L P S +LD CG G + +
Sbjct: 10 DVYDLFYLG----RGKDYAAEASDIADLVRSRTPEASSLLDVACGTGTHLEHFTKEFGDT 65
Query: 147 -GCDISPSLIKICVDRGHEV--LVADAVNLPYRSDFGDAAISIA-VLHHLSTESRRKKAI 202
G ++S ++ R + D + F A +S+ + +L T A+
Sbjct: 66 AGLELSEDMLTHARKRLPDATLHQGDMRDFRLGRKF-SAVVSMFSSVGYLKTTEELGAAV 124
Query: 203 EELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEE 243
++ G +V++ W ++ W +
Sbjct: 125 ASFAEHLEPGGVVVVEPWWF---PETFADGWVSADVVRRDG 162
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} Length = 273 | Back alignment and structure |
|---|
Score = 62.1 bits (151), Expect = 4e-11
Identities = 38/150 (25%), Positives = 58/150 (38%), Gaps = 22/150 (14%)
Query: 120 LPSGSLVLDAGCGNGK---YLGLNPDCFFVGCDISPSLIKICVDRGHE--------VLVA 168
+ SG VLD GCG GK L D G IS + R A
Sbjct: 59 VRSGDRVLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANARATAAGLANRVTFSYA 118
Query: 169 DAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKS 228
DA++LP+ DA ++ LHH+ R +A+ E+ RV++ G V I +
Sbjct: 119 DAMDLPFEDASFDAVWALESLHHM---PDRGRALREMARVLRPGGTVAIADFV------- 168
Query: 229 LVTKWTPLTQKYVEEWI-GPGSPRVRSPSA 257
L+ ++ V+ + G G +
Sbjct: 169 LLAPVEGAKKEAVDAFRAGGGVLSLGGIDE 198
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} Length = 215 | Back alignment and structure |
|---|
Score = 60.8 bits (147), Expect = 5e-11
Identities = 28/138 (20%), Positives = 50/138 (36%), Gaps = 17/138 (12%)
Query: 80 IKSTPELEKKYVHRVYDAIAPHFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGKYLGL 139
+ PE Y HR + + + ++A L P+ +V D GCG+ +
Sbjct: 29 FQEDPEAFLLY-HRGFQSQVKKWPLQP---VDRIARDLRQRPASLVVADFGCGDCRLASS 84
Query: 140 NPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRK 199
+ D++ V V D +P + D A+ L + +
Sbjct: 85 IRN-PVHCFDLAS--------LDPRVTVCDMAQVPLEDESVDVAVFCLSLMG----TNIR 131
Query: 200 KAIEELVRVVKKGSLVLI 217
+EE RV+K G L+ +
Sbjct: 132 DFLEEANRVLKPGGLLKV 149
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 Length = 260 | Back alignment and structure |
|---|
Score = 61.4 bits (149), Expect = 7e-11
Identities = 28/146 (19%), Positives = 51/146 (34%), Gaps = 19/146 (13%)
Query: 90 YVHRVYDAIAPHF-SSTRFAKWPKVATFLN--SLPSGSLVLDAGCGNG----KYLGLNPD 142
+++ + +S AK +A + +L VLD G G +
Sbjct: 2 GSDKIHHHHHHMYVTSQIHAKGSDLAKLMQIAALKGNEEVLDVATGGGHVANAFAPFVKK 61
Query: 143 CFFVGCDISPSLIKI----CVDRGH---EVLVADAVNLPYRSDFGDAAISIAVLHHLSTE 195
V D++ ++K+ GH E + DA +P+ + HH
Sbjct: 62 V--VAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTDERFHIVTCRIAAHHF--- 116
Query: 196 SRRKKAIEELVRVVKKGSLVLITVWA 221
+ E RV+KKG +L+ +
Sbjct: 117 PNPASFVSEAYRVLKKGGQLLLVDNS 142
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} Length = 215 | Back alignment and structure |
|---|
Score = 60.4 bits (146), Expect = 8e-11
Identities = 28/167 (16%), Positives = 42/167 (25%), Gaps = 21/167 (12%)
Query: 87 EKKYVHRVYDAIAPHFSSTRFAKWPKVATFLNS-LPSGSLVLDAGCGNGK---YLGLNPD 142
E +Y + Y A F + L L +L GCGN L L
Sbjct: 6 EVEYWDQRYQGAADSAPYDWFGDFSSFRALLEPELRPEDRILVLGCGNSALSYELFLGGF 65
Query: 143 CFFVGCDISPSLIKICVDR-----GHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESR 197
D S ++ D L + S D + L L R
Sbjct: 66 PNVTSVDYSSVVVAAMQACYAHVPQLRWETMDVRKLDFPSASFDVVLEKGTLDALLAGER 125
Query: 198 ------------RKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTK 232
+ + E+ RV+ G + A +
Sbjct: 126 DPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSAAPHFRTRHYAQ 172
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 Length = 297 | Back alignment and structure |
|---|
Score = 61.4 bits (149), Expect = 9e-11
Identities = 22/112 (19%), Positives = 37/112 (33%), Gaps = 14/112 (12%)
Query: 120 LPSGSLVLDAGCGNGK---YLGLNPDCFFVGCDISPSLIKICVDRGHE--------VLVA 168
L + LD G G G +L +I+P K + ++ V
Sbjct: 80 LQRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYG 139
Query: 169 DAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 220
+ +P + D S H + K +E RV+K ++ IT
Sbjct: 140 SFLEIPCEDNSYDFIWSQDAFLHS---PDKLKVFQECARVLKPRGVMAITDP 188
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 Length = 269 | Back alignment and structure |
|---|
Score = 61.1 bits (148), Expect = 1e-10
Identities = 33/107 (30%), Positives = 40/107 (37%), Gaps = 16/107 (14%)
Query: 121 PSGSLVLDAGCGNGKYLGL----NPDCFFVGCDISPSLIKICVDRGHEV--LVADAVNLP 174
+ VLD GCG G Y P+ G D+S IK R +V VA + LP
Sbjct: 84 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLP 143
Query: 175 YRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 221
+ DA I I EEL RVVK G V+
Sbjct: 144 FSDTSMDAIIRIYAPCKA----------EELARVVKPGGWVITATPG 180
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 Length = 246 | Back alignment and structure |
|---|
Score = 60.5 bits (147), Expect = 1e-10
Identities = 24/151 (15%), Positives = 49/151 (32%), Gaps = 20/151 (13%)
Query: 93 RVYDAIAPHFSSTRFAKWPKVATFLNSL-----PSGSLVLDAGCGNGKY-LGLNPDCFFV 146
+YD + + + KW + F+ LD CG G L P
Sbjct: 8 HIYDKL--IRADVDYKKW---SDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPKFKNT 62
Query: 147 -GCDISPSLIKICVDRGHE------VLVADAVNLPYRSDFGDAAISIA-VLHHLSTESRR 198
D+S ++ ++ + D NL F D +++
Sbjct: 63 WAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNINRKF-DLITCCLDSTNYIIDSDDL 121
Query: 199 KKAIEELVRVVKKGSLVLITVWAVEQEDKSL 229
KK + + +K+G + + + + + + L
Sbjct: 122 KKYFKAVSNHLKEGGVFIFDINSYYKLSQVL 152
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} Length = 219 | Back alignment and structure |
|---|
Score = 59.7 bits (145), Expect = 2e-10
Identities = 34/170 (20%), Positives = 52/170 (30%), Gaps = 23/170 (13%)
Query: 91 VHRVYDA-IAPHFSSTRFAKWPKVATFLNSLP--SGSLVLDAGCGNGKYLGL-----NPD 142
+ +D + L G VLD G G G YL
Sbjct: 3 LAHKFDPSKIKKLDDPSRLELFDPEKVLKEFGLKEGMTVLDVGTGAGFYLPYLSKMVGEK 62
Query: 143 CFFVGCDISPSLIKICVDRGH-------EVLVADAVNLPYRSDFGDAAISIAVLHHLSTE 195
D+ ++ ++ + EVL ++ +P + D H L
Sbjct: 63 GKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENKIPLPDNTVDFIFMAFTFHEL--- 119
Query: 196 SRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWI 245
S K +EEL RV K + + I W K K P + Y E +
Sbjct: 120 SEPLKFLEELKRVAKPFAYLAIIDW-----KKEERDKGPPPEEVYSEWEV 164
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 252 | Back alignment and structure |
|---|
Score = 59.8 bits (145), Expect = 2e-10
Identities = 27/162 (16%), Positives = 58/162 (35%), Gaps = 20/162 (12%)
Query: 91 VHRVYDAIAPH---FSSTRFAKWPKVATFLNSL------PSGSLVLDAGCGNGKY-LGLN 140
++ +Y +A + R + F+ + VLD CG G L L
Sbjct: 1 MYELYTLLAEYYDTIYRRRIERVKAEIDFVEEIFKEDAKREVRRVLDLACGTGIPTLELA 60
Query: 141 PDCFFV-GCDISPSLIKI----CVDRGHEV--LVADAVNLPYRSDFGDAAISIA-VLHHL 192
+ V G D+ ++++ +R ++ L D + + ++++F DA + +
Sbjct: 61 ERGYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFKNEF-DAVTMFFSTIMYF 119
Query: 193 STESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWT 234
E R K ++ +K G + + + W
Sbjct: 120 DEEDLR-KLFSKVAEALKPGGVFITDFPCWFYGGRDGPVVWN 160
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} Length = 259 | Back alignment and structure |
|---|
Score = 59.5 bits (144), Expect = 3e-10
Identities = 26/170 (15%), Positives = 47/170 (27%), Gaps = 15/170 (8%)
Query: 95 YDAIAPHFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGKY----LGLNPDCFFVGCDI 150
Y F R + + + D GCG G G D
Sbjct: 11 YLK----FEDERTRPARDLLAQVPLERVLN-GYDLGCGPGNSTELLTDRYGVNVITGIDS 65
Query: 151 SPSLIKICVDRG--HEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRV 208
+++ DR AD D + AV + + +L+
Sbjct: 66 DDDMLEKAADRLPNTNFGKADLATWKPAQKA-DLLYANAVFQWV---PDHLAVLSQLMDQ 121
Query: 209 VKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGPGSPRVRSPSAR 258
++ G ++ + + QE + T + + + G G R P
Sbjct: 122 LESGGVLAVQMPDNLQEPTHIAMHETADGGPWKDAFSGGGLRRKPLPPPS 171
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} Length = 245 | Back alignment and structure |
|---|
Score = 58.1 bits (140), Expect = 8e-10
Identities = 24/120 (20%), Positives = 40/120 (33%), Gaps = 12/120 (10%)
Query: 113 VATFLNSLPSGSLVLDAGCGNGKY-LGLNPDCFFV-GCDISPSLIKI----CVDRGHEVL 166
+ F ++D CGNG L+ V G D+S S ++I
Sbjct: 47 LPRFELLFNPELPLIDFACGNGTQTKFLSQFFPRVIGLDVSKSALEIAAKENTAANISYR 106
Query: 167 VADAVNLPYRSDF----GDAAI-SIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 221
+ D + + GDA I HH+ E R + L ++ K + +
Sbjct: 107 LLDGLVPEQAAQIHSEIGDANIYMRTGFHHIPVEKRE-LLGQSLRILLGKQGAMYLIELG 165
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A Length = 219 | Back alignment and structure |
|---|
Score = 56.9 bits (137), Expect = 1e-09
Identities = 30/122 (24%), Positives = 48/122 (39%), Gaps = 18/122 (14%)
Query: 113 VATFLNSLPSGSLVLDAGCGNGKYLGL----NPDCFFVGCDISPSLIKICVDRGH----- 163
V L S+ + V+D GCG G L L G D+S S+++ DR
Sbjct: 21 VVAVLKSVNAKK-VIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLP 79
Query: 164 -------EVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVL 216
+ + V R DAA I V+ HL E+R + + L + ++++
Sbjct: 80 EMQRKRISLFQSSLVYRDKRFSGYDAATVIEVIEHLD-ENRLQAFEKVLFEFTRPQTVIV 138
Query: 217 IT 218
T
Sbjct: 139 ST 140
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} Length = 227 | Back alignment and structure |
|---|
Score = 56.7 bits (137), Expect = 2e-09
Identities = 23/145 (15%), Positives = 42/145 (28%), Gaps = 29/145 (20%)
Query: 95 YDAIAPHF------SSTRFAKWPKVATFLNSLP--SGSLVLDAGCGNGKYL------GLN 140
+ A + + + L ++ VLD GCG G L G+
Sbjct: 17 WHQNAQAWIDAVRHGAIESRRQVTDQAILLAILGRQPERVLDLGCGEGWLLRALADRGIE 76
Query: 141 PDCFFVGCDISPSLIKICVDRGHE------VLVADAVNLPYRSDFGDAAISIAVLHHLST 194
VG D +L+ G +P D+ D + L H
Sbjct: 77 A----VGVDGDRTLVDAARAAGAGEVHLASYAQLAEAKVPVGKDY-DLICANFALLHQDI 131
Query: 195 ESRRKKAIEELVRVVKKGSLVLITV 219
+ + + ++ G ++I
Sbjct: 132 I----ELLSAMRTLLVPGGALVIQT 152
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* Length = 239 | Back alignment and structure |
|---|
Score = 56.7 bits (137), Expect = 2e-09
Identities = 31/153 (20%), Positives = 56/153 (36%), Gaps = 32/153 (20%)
Query: 120 LPSGSLVLDAGCGNGKYLGLNPDCFF--------VGCDISPSLIKI----CVDRGH---E 164
+ VLD G G G +G D + ++++ ++G
Sbjct: 19 CRAEHRVLDIGAGAGH------TALAFSPYVQECIGVDATKEMVEVASSFAQEKGVENVR 72
Query: 165 VLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKK-GSLVLITVWAVE 223
A +LP+ D D HH S +KA+ E+ RV+K+ G +L+ +A E
Sbjct: 73 FQQGTAESLPFPDDSFDIITCRYAAHHF---SDVRKAVREVARVLKQDGRFLLVDHYAPE 129
Query: 224 QEDKSLVTKWTPLTQKYVEEWIGPGSPRVRSPS 256
++ ++ ++ P R S S
Sbjct: 130 DP---VLDEF----VNHLNRLRDPSHVRESSLS 155
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* Length = 299 | Back alignment and structure |
|---|
Score = 57.2 bits (138), Expect = 2e-09
Identities = 21/166 (12%), Positives = 48/166 (28%), Gaps = 19/166 (11%)
Query: 93 RVYDAIAPHFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGKY-LGLNPDCFFV-GCDI 150
Y + T A + P VL+ G G+ + V ++
Sbjct: 57 DTYRDLIQDADGTSEA----REFATRTGPVSGPVLELAAGMGRLTFPFLDLGWEVTALEL 112
Query: 151 SPSLIKIC----------VDRGHEVLVADAVNLPYRSDFGDAAISIA-VLHHLSTESRRK 199
S S++ V ++ D F + + ++ L RR
Sbjct: 113 STSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFALDKRF-GTVVISSGSINELDEADRR- 170
Query: 200 KAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWI 245
+ ++ G L+++ E + + + L + ++
Sbjct: 171 GLYASVREHLEPGGKFLLSLAMSEAAESEPLERKQELPGRSGRRYV 216
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} Length = 230 | Back alignment and structure |
|---|
Score = 55.5 bits (134), Expect = 4e-09
Identities = 22/105 (20%), Positives = 41/105 (39%), Gaps = 11/105 (10%)
Query: 121 PSGSLVLDAGCGNGKYL----GLNPDCFFVGCDISPSLIKICVDRGHEVLVAD--AVNLP 174
VLD GC +G G + P + ++ V++ D +++P
Sbjct: 31 KEWKEVLDIGCSSGALGAAIKENGTRV--SGIEAFPEAAEQAKEKLDHVVLGDIETMDMP 88
Query: 175 YRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219
Y + D I VL HL IE++ +K+ ++L ++
Sbjct: 89 YEEEQFDCVIFGDVLEHL---FDPWAVIEKVKPYIKQNGVILASI 130
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* Length = 216 | Back alignment and structure |
|---|
Score = 54.1 bits (130), Expect = 1e-08
Identities = 28/139 (20%), Positives = 49/139 (35%), Gaps = 11/139 (7%)
Query: 92 HRVYDAIAP-HFSSTRFAKWPKVATFLNSLPSGSL--VLDAGCGNGKYL-GLNPDCFFV- 146
R P F + SL SG++ L+ GC G + L P C +
Sbjct: 18 ERELANDDPWRLDDNPFERERHTQLLRLSLSSGAVSNGLEIGCAAGAFTEKLAPHCKRLT 77
Query: 147 GCDISPSLIKI----CVDRGH-EVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKA 201
D+ P I H D + F D + VL++L ++ + A
Sbjct: 78 VIDVMPRAIGRACQRTKRWSHISWAATDILQFSTAELF-DLIVVAEVLYYLEDMTQMRTA 136
Query: 202 IEELVRVVKKGSLVLITVW 220
I+ +V+++ G ++
Sbjct: 137 IDNMVKMLAPGGHLVFGSA 155
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} Length = 235 | Back alignment and structure |
|---|
Score = 54.0 bits (130), Expect = 1e-08
Identities = 26/118 (22%), Positives = 44/118 (37%), Gaps = 18/118 (15%)
Query: 116 FLNSLPSGSLVLDAGCGNG----KYLGLNPDCFFVGCDISPSLIKICVDRGHEV------ 165
N L +LD GCG+G + G DI+ I++
Sbjct: 24 IHNYLQEDDEILDIGCGSGKISLELASKGYSV--TGIDINSEAIRLAETAARSPGLNQKT 81
Query: 166 ------LVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLI 217
V +A +L + D A+ A L + R + I+E+ RV+K G+ + +
Sbjct: 82 GGKAEFKVENASSLSFHDSSFDFAVMQAFLTSVPDPKERSRIIKEVFRVLKPGAYLYL 139
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} Length = 286 | Back alignment and structure |
|---|
Score = 53.8 bits (129), Expect = 2e-08
Identities = 33/193 (17%), Positives = 54/193 (27%), Gaps = 25/193 (12%)
Query: 47 VKGASDFCTLGADGESSIHSVSTGEDQRCSS------SSIKSTPELEKKYVHRVYDAIAP 100
+KG F L +G+ + T E + +LE
Sbjct: 40 LKGKLKFYELTENGDVIAEHIFTPESHIPFVEPQAWHRVEALSDDLECTLGFYCKKEDYF 99
Query: 101 HFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGKY------LGLNPDCFFVGCDISPSL 154
A V + VLD GCG G+ LG + D + +
Sbjct: 100 SKKYNTTAIHGDVVDAAKIISPCK-VLDLGCGQGRNSLYLSLLGYD----VTSWDHNENS 154
Query: 155 I----KICVDRGHEV--LVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRV 208
I + + + D + ++ D +S V L+ E R I+ +
Sbjct: 155 IAFLNETKEKENLNISTALYDINAANIQENY-DFIVSTVVFMFLNRE-RVPSIIKNMKEH 212
Query: 209 VKKGSLVLITVWA 221
G LI
Sbjct: 213 TNVGGYNLIVAAM 225
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} Length = 226 | Back alignment and structure |
|---|
Score = 51.6 bits (123), Expect = 9e-08
Identities = 26/135 (19%), Positives = 38/135 (28%), Gaps = 22/135 (16%)
Query: 90 YVHRVYDAIAPHFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGKY-LGLNPDCFFV-G 147
Y H ++ F W L + VL+AGCG+G P
Sbjct: 21 YRHPWARVLSGPDPELTFDLW-----LSRLLTPQTRVLEAGCGHGPDAARFGPQAARWAA 75
Query: 148 CDISPSLIKICVDR--GHEVLVADAV-NLPYRSD--FGDAAISIAVLHHLSTESRRKKAI 202
D SP L+K+ +V + LP F +S I
Sbjct: 76 YDFSPELLKLARANAPHADVYEWNGKGELPAGLGAPF-GLIVSRRGPTS---------VI 125
Query: 203 EELVRVVKKGSLVLI 217
L + + L
Sbjct: 126 LRLPELAAPDAHFLY 140
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* Length = 312 | Back alignment and structure |
|---|
Score = 51.8 bits (124), Expect = 1e-07
Identities = 23/152 (15%), Positives = 42/152 (27%), Gaps = 18/152 (11%)
Query: 108 AKWPKVATFLNSLPSGSLVLDAGCGNG---KYLGLNPDCFFVGCDISPSLIKICVDRGHE 164
A+ + L ++DAGCG G G +S + R E
Sbjct: 103 AQAEFLMDHLGQAGPDDTLVDAGCGRGGSMVMAHRRFGSRVEGVTLSAAQADFGNRRARE 162
Query: 165 --------VLVADAVNLPYRSDFGDAAISI-AVLHHLSTESRRKKAIEELVRVVKKGSLV 215
V + ++ P+ A+ + + ++ E R +K G
Sbjct: 163 LRIDDHVRSRVCNMLDTPFDKGAVTASWNNESTMY-----VDLHDLFSEHSRFLKVGGRY 217
Query: 216 LITVWAVEQEDKSLVTKWTPLTQKYVEEWIGP 247
+ +KW + E I
Sbjct: 218 VTITGCWNPRYGQ-PSKWVSQINAHFECNIHS 248
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} Length = 218 | Back alignment and structure |
|---|
Score = 50.5 bits (120), Expect = 2e-07
Identities = 28/144 (19%), Positives = 50/144 (34%), Gaps = 21/144 (14%)
Query: 123 GSLVLDAGCGNGKYL----GLNPDCFFVGCDISPSLIKICVDRGHE-----------VLV 167
+VLD G G+GK+ NP V D S ++ + L
Sbjct: 28 DDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLW 87
Query: 168 ADAVNLPYRSDFGDAAISI---AVLHHLSTESRRKKAIEELVRVVKK-GSLVLITVWAVE 223
A A LP S G+ + + ++L + S + + + V + S ++
Sbjct: 88 ATAERLPPLSGVGELHVLMPWGSLLRGVLGSSP--EMLRGMAAVCRPGASFLVALNLHAW 145
Query: 224 QEDKSLVTKWTPLTQKYVEEWIGP 247
+ V + T +EW+ P
Sbjct: 146 RPSVPEVGEHPEPTPDSADEWLAP 169
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A Length = 217 | Back alignment and structure |
|---|
Score = 50.3 bits (120), Expect = 2e-07
Identities = 24/109 (22%), Positives = 39/109 (35%), Gaps = 17/109 (15%)
Query: 126 VLDAGCGNGKYLGL----NPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFG- 180
V+D GCG G L + + G D+S ++I +R + + + G
Sbjct: 33 VIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGA 92
Query: 181 -----------DAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLIT 218
DAA I V+ HL SR L + +++ T
Sbjct: 93 LTYQDKRFHGYDAATVIEVIEHLD-LSRLGAFERVLFEFAQPKIVIVTT 140
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* Length = 293 | Back alignment and structure |
|---|
Score = 50.8 bits (121), Expect = 3e-07
Identities = 38/182 (20%), Positives = 61/182 (33%), Gaps = 25/182 (13%)
Query: 84 PELEKKYVHRVYDAIAPHFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGKY-LGLNPD 142
+ RV+ S R A++ L VLD CG G + L +
Sbjct: 20 DQYADGEAARVWQLYIGDTRS-RTAEYKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEE 78
Query: 143 CFFV-GCDISPSLIKI----CVDRGHEVLV-------ADAVNLPYRSDFG---DAAISIA 187
F V D S ++K +R E A+ + L G DA I +
Sbjct: 79 GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAVICLG 138
Query: 188 -VLHHLST----ESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVE 242
HL +S + A++ + +V+ G L++I D L T P +
Sbjct: 139 NSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHR---NYDYILSTGCAPPGKNIYY 195
Query: 243 EW 244
+
Sbjct: 196 KS 197
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A Length = 383 | Back alignment and structure |
|---|
Score = 50.9 bits (121), Expect = 3e-07
Identities = 30/180 (16%), Positives = 59/180 (32%), Gaps = 35/180 (19%)
Query: 68 STGEDQRCSSSSIKSTPELEKKYVHRVYDAIAPHFSSTRFAKWPKVATFLNSLPSGSLVL 127
S+ + + + + PE +K + + D + +F SL G+ VL
Sbjct: 35 SSADLKTSACKLAAAVPESHRKILADIADEVL-----EKFYGCGSTLPADGSLE-GATVL 88
Query: 128 DAGCGNGKYLGL-----NPDCFFVGCDISPSLIKICVDR--------------------- 161
D GCG G+ + L +G D+ + +++
Sbjct: 89 DLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLK 148
Query: 162 GHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 221
G +A A D IS V + + + +E+ RV++ G + +
Sbjct: 149 GFIENLATAEPEGVPDSSVDIVISNCVCNLS---TNKLALFKEIHRVLRDGGELYFSDVY 205
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* Length = 298 | Back alignment and structure |
|---|
Score = 50.5 bits (120), Expect = 3e-07
Identities = 30/174 (17%), Positives = 47/174 (27%), Gaps = 30/174 (17%)
Query: 77 SSSIKSTPELEKKYVHRVYDAIAPHFSST-----------------RFAKWPKVATFLNS 119
SS + + + + I H++S + K
Sbjct: 2 DSSSPLKTFRKDQAMEGKKEEIREHYNSIRERGRESRQRSKTINIRNANNFIKACLIRLY 61
Query: 120 LPSGSLVLDAGCGNGKYLGL---NPDCFFVGCDISPSLIKICVDR--------GHEVLVA 168
G VLD GCG G L + G DI+ I R
Sbjct: 62 TKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQ 121
Query: 169 DAVNLPYRSDFGDAAISI--AVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 220
D+ IS + + ST A + R ++ G ++TV
Sbjct: 122 DSYGRHMDLGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVP 175
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} Length = 275 | Back alignment and structure |
|---|
Score = 49.3 bits (117), Expect = 8e-07
Identities = 31/237 (13%), Positives = 62/237 (26%), Gaps = 36/237 (15%)
Query: 96 DAIAPHFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNG-------KYLGLNPDCFFVGC 148
A A + A +A + G +L+ GCG G +G G
Sbjct: 18 TANARTIQRRQTAHRLAIAEAWQ-VKPGEKILEIGCGQGDLSAVLADQVG--SSGHVTGI 74
Query: 149 DISPSLIKICVDRGH--------------EVLVADAVN---LPYRSDFGDAAISIAVLHH 191
DI+ + G V ++ P D + L +
Sbjct: 75 DIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNLSDDLGPIADQHFDRVVLAHSLWY 134
Query: 192 LSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTP-LTQKYVEEWIGPGSP 250
+ + V + W+++ + + Q +
Sbjct: 135 F---ASANALALLFKNMAAVCDHVDVAEWSMQPTALDQIGHLQAAMIQGLLYAIAPSDVA 191
Query: 251 RVRS-PSARTLESIPETEDNG--SEEQGKEPKQSVPDKLWESISLTSQSEDDSVISQ 304
+R+ + TL I DN ++ D WE + + + + +
Sbjct: 192 NIRTLITPDTLAQI--AHDNTWTYTAGTIVEDPTLDDAHWEIATTNALLTELKLSTD 246
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 Length = 256 | Back alignment and structure |
|---|
Score = 48.2 bits (115), Expect = 1e-06
Identities = 21/110 (19%), Positives = 34/110 (30%), Gaps = 15/110 (13%)
Query: 120 LPSGSLVLDAGCGNG---KYLGLNPDCFFVGCDISPSLIKI----CVDRGH----EVLVA 168
+ G+ +LD G G+G + G D+S + G +
Sbjct: 34 MKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHN 93
Query: 169 DAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLIT 218
DA D A + A E L + +K G ++LI
Sbjct: 94 DAAGYVANEKC-DVAACVGATWIA---GGFAGAEELLAQSLKPGGIMLIG 139
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A Length = 202 | Back alignment and structure |
|---|
Score = 47.6 bits (113), Expect = 2e-06
Identities = 21/126 (16%), Positives = 44/126 (34%), Gaps = 20/126 (15%)
Query: 113 VATFLNSLPSGSLVLDAGCGNGKY------LGLNPDCFFVGCDISPSLIKICVDRGHE-- 164
+ + N +P G +L G G+ LG D S + E
Sbjct: 21 LVSVANQIPQGK-ILCLAEGEGRNACFLASLGYEV----TAVDQSSVGLAKAKQLAQEKG 75
Query: 165 ----VLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 220
+ ++ + +D + +SI S R++ ++ + +K G + ++ +
Sbjct: 76 VKITTVQSNLADFDIVADAWEGIVSI---FCHLPSSLRQQLYPKVYQGLKPGGVFILEGF 132
Query: 221 AVEQED 226
A EQ
Sbjct: 133 APEQLQ 138
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 Length = 241 | Back alignment and structure |
|---|
Score = 47.4 bits (112), Expect = 3e-06
Identities = 23/134 (17%), Positives = 41/134 (30%), Gaps = 13/134 (9%)
Query: 103 SSTRFAKWPKVATFLNSLPSGSLVLDAGCGNG---KYLGLNPDCFFVGCDISPSLIKIC- 158
SS +F + + S LD G G G K L L DI+ +
Sbjct: 62 SSRKF--LQRFLREGPNKTGTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAK 119
Query: 159 ---VDRGHEV---LVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKG 212
+ G V + D D V+ HL T+ + + ++
Sbjct: 120 TYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVIGHL-TDQHLAEFLRRCKGSLRPN 178
Query: 213 SLVLITVWAVEQED 226
+++I ++
Sbjct: 179 GIIVIKDNMAQEGV 192
|
| >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} Length = 200 | Back alignment and structure |
|---|
Score = 46.4 bits (109), Expect = 3e-06
Identities = 22/132 (16%), Positives = 45/132 (34%), Gaps = 16/132 (12%)
Query: 96 DAIAPHFSST-RFAKWPKVATFL-NSLPSGSLVLDAGCGNG----KYLGLNPDCFFVGCD 149
D + H S+ R A T++ ++ S +LD GCG N + D
Sbjct: 21 DLLKIHSSTNERVATLNDFYTYVFGNIKHVSSILDFGCGFNPLALYQWNENEKIIYHAYD 80
Query: 150 ISPSLIKICVDR------GHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIE 203
I + I + + + Y+ + D + +L L ++ I
Sbjct: 81 IDRAEIAFLSSIIGKLKTTIKYRFLNKESDVYKGTY-DVVFLLKMLPVL---KQQDVNIL 136
Query: 204 ELVRVVKKGSLV 215
+ +++ + V
Sbjct: 137 DFLQLFHTQNFV 148
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 Length = 254 | Back alignment and structure |
|---|
Score = 47.0 bits (111), Expect = 3e-06
Identities = 16/123 (13%), Positives = 33/123 (26%), Gaps = 11/123 (8%)
Query: 114 ATFLNSLPS--GSLVLDAGCGNG---KYLGLNPDCFFVGCDISPSLIKIC-----VDRGH 163
F+ SLP S LD G G G K L + +++
Sbjct: 83 RNFIASLPGHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGMPVG 142
Query: 164 EVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVE 223
+ ++A + D + +L+ K + + + +
Sbjct: 143 KFILASMETATLPPNTYDLIVIQWTAIYLTDA-DFVKFFKHCQQALTPNGYIFFKENCST 201
Query: 224 QED 226
+
Sbjct: 202 GDR 204
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* Length = 225 | Back alignment and structure |
|---|
Score = 46.7 bits (110), Expect = 4e-06
Identities = 24/163 (14%), Positives = 59/163 (36%), Gaps = 30/163 (18%)
Query: 108 AKWPKVATFLNSLPSGSLVLDAGCGNGKYL----GLNPDCFFVGCDISPSLIKICVDRGH 163
+ ++ + +D G G+G+ + + + F++G D + +
Sbjct: 15 DELTEI--IGQFDR---VHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKII 69
Query: 164 E-----------VLVADAVNLPYRSDFGDAAISI-----AVLHHLSTESRRKKAIEELVR 207
+ ++A A +LP+ +ISI +L ++ +R + +
Sbjct: 70 KKPSKGGLSNVVFVIAAAESLPFELKNIADSISILFPWGTLLEYVIKPNR--DILSNVAD 127
Query: 208 VVKK-GSLVLITVWAVEQEDKSLVTKWTPLTQK--YVEEWIGP 247
+ KK +T ++ E+ + + PL K ++ E
Sbjct: 128 LAKKEAHFEFVTTYSDSYEEAEIKKRGLPLLSKAYFLSEQYKA 170
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} Length = 299 | Back alignment and structure |
|---|
Score = 47.3 bits (112), Expect = 4e-06
Identities = 24/161 (14%), Positives = 48/161 (29%), Gaps = 30/161 (18%)
Query: 111 PKVATFLNSL--PSGSLVLDAGCGNGKYLG-----LNPDCFFVGCDISPSLIKICVDRGH 163
++ L++D GCG G L P +G D+S ++IK
Sbjct: 23 SDFYKMIDEYHDGERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKE 82
Query: 164 ---------EVLVADAVNLPYRSDFG------DAAISIAVLHHLSTESRRKKAIEELVRV 208
++ + + + D ++ H E K
Sbjct: 83 GSPDTYKNVSFKISSSDDFKFLGADSVDKQKIDMITAVECAHWFDFE----KFQRSAYAN 138
Query: 209 VKKGSLVLITVWAVEQEDKSLVTKWTPLTQK--YVEEWIGP 247
++K + I W ++ L + Y ++ +GP
Sbjct: 139 LRKDGTIAI--WGYADPIFPDYPEFDDLMIEVPYGKQGLGP 177
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} Length = 950 | Back alignment and structure |
|---|
Score = 46.8 bits (110), Expect = 1e-05
Identities = 21/111 (18%), Positives = 39/111 (35%), Gaps = 19/111 (17%)
Query: 126 VLDAGCGNGKYLGL---NPDCF--FVGCDISPSLIKICVDRGH-------------EVLV 167
++D GCG+G L P +G DISP + H +
Sbjct: 725 LVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYD 784
Query: 168 ADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLIT 218
+ R D + V+ H+ E + + E+++ + L++ T
Sbjct: 785 GSILEFDSRLHDVDIGTCLEVIEHME-EDQACEFGEKVLSLFHPKLLIVST 834
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} Length = 197 | Back alignment and structure |
|---|
Score = 44.5 bits (105), Expect = 1e-05
Identities = 19/122 (15%), Positives = 41/122 (33%), Gaps = 24/122 (19%)
Query: 120 LPSGSLVLDAGCGNG-------KYLGLNPDCFFVGCDISPSLIKICVDRGH--------E 164
+ G V+DA CGNG +G + G DI I +
Sbjct: 20 VKEGDTVVDATCGNGNDTAFLASLVG--ENGRVFGFDIQDKAIANTTKKLTDLNLIDRVT 77
Query: 165 VLVADAVNLPYRSDFGDAAISIAVLHHLSTE-------SRRKKAIEELVRVVKKGSLVLI 217
++ N+ D A+ + + S + +A+ + + ++ G ++ +
Sbjct: 78 LIKDGHQNMDKYIDCPVKAVMFNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITV 137
Query: 218 TV 219
+
Sbjct: 138 VI 139
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* Length = 185 | Back alignment and structure |
|---|
Score = 43.3 bits (102), Expect = 3e-05
Identities = 23/121 (19%), Positives = 44/121 (36%), Gaps = 20/121 (16%)
Query: 118 NSLPSGSLVLDAGCGNG---KYLGLNPDCFFVGCDISPSLIKICVDRGH-------EVLV 167
L S+V+DA GNG +L D+ + R E+++
Sbjct: 18 EVLDDESIVVDATMGNGNDTAFL-AGLSKKVYAFDVQEQALGKTSQRLSDLGIENTELIL 76
Query: 168 ADAVNLPYRSDFGDAAISIAVLHHLSTESRRK--------KAIEELVRVVKKGSLVLITV 219
NL + A I L +L + + +AIE+++ ++ G + I +
Sbjct: 77 DGHENLDHYVREPIRAA-IFNLGYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMI 135
Query: 220 W 220
+
Sbjct: 136 Y 136
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* Length = 292 | Back alignment and structure |
|---|
Score = 43.9 bits (103), Expect = 4e-05
Identities = 39/298 (13%), Positives = 78/298 (26%), Gaps = 69/298 (23%)
Query: 78 SSIKSTPELEKKYVHRVYDAIAPHFSSTRFA------KWPKVATFLNSLPSGSLVLDAGC 131
SS++S KYV + H + + K P + + S +L G
Sbjct: 3 SSMRSLFSDHGKYVES-FRRFLNHSTEHQCMQEFMDKKLPGIIGRIGDTKSEIKILSIGG 61
Query: 132 GNG--------KYLGLNPDCF--FVGCDISPSLI----------------KICVDRGHEV 165
G G K P + S I K +
Sbjct: 62 GAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSS 121
Query: 166 LVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQE 225
+ D I +L+++ ++ ++ + +LI V +
Sbjct: 122 EYQSRMLEKKELQKWDFIHMIQMLYYV---KDIPATLKFFHSLLGTNAKMLIIVVSGSS- 177
Query: 226 DKSLVTKWTPLTQKYVEEWIGPGSPRVRSPSA--RTLES---------------IPETED 268
W L +KY + + + + L++ I +
Sbjct: 178 ------GWDKLWKKYGSRFPQDDLCQYITSDDLTQMLDNLGLKYECYDLLSTMDISDCFI 231
Query: 269 NGSEE---------QGKEPKQSVPDKLWESISLTSQSEDDSVISQDVKIITNQQEYFV 317
+G+E + + P L + Q + S + + N + V
Sbjct: 232 DGNENGDLLWDFLTETCNFNATAPPDLRAELGKDLQEPEFSAKKEGKVLFNNTLSFIV 289
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* Length = 298 | Back alignment and structure |
|---|
Score = 43.6 bits (102), Expect = 6e-05
Identities = 18/123 (14%), Positives = 35/123 (28%), Gaps = 19/123 (15%)
Query: 106 RFAKWPKVATFLNSLPSGSLVLDAGCGNGKY----LGLNPDCFFVGCDISPSLI----KI 157
R+ + K L G + G G L +I P + K+
Sbjct: 106 RYLELLKNEAALGRFRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKV 165
Query: 158 CVDRGH---EVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSL 214
G V+ D + +F D + A +++ + R V +
Sbjct: 166 IEGLGVDGVNVITGDETVIDGL-EF-DVLMVAA------LAEPKRRVFRNIHRYVDTETR 217
Query: 215 VLI 217
++
Sbjct: 218 IIY 220
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* Length = 313 | Back alignment and structure |
|---|
Score = 42.6 bits (99), Expect = 1e-04
Identities = 25/157 (15%), Positives = 41/157 (26%), Gaps = 26/157 (16%)
Query: 113 VATFLNSLPSGSLVLDAGCGNG----KYLGLNPDCFFVGCDISPSLIKICVDRGH----- 163
+ VLD GCG G K+ + V DI+ +K C R
Sbjct: 25 LEKVRQKKKRDITVLDLGCGKGGDLLKWKKGRIN-KLVCTDIADVSVKQCQQRYEDMKNR 83
Query: 164 ---------EVLVADAVNLPYRSDFG------DAAISIAVLHH-LSTESRRKKAIEELVR 207
E + AD+ F D V H+ + + +
Sbjct: 84 RDSEYIFSAEFITADSSKELLIDKFRDPQMCFDICSCQFVCHYSFESYEQADMMLRNACE 143
Query: 208 VVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEW 244
+ G + T + + L T +
Sbjct: 144 RLSPGGYFIGTTPNSFELIRRLEASETESFGNEIYTV 180
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A Length = 250 | Back alignment and structure |
|---|
Score = 42.5 bits (100), Expect = 1e-04
Identities = 18/139 (12%), Positives = 42/139 (30%), Gaps = 12/139 (8%)
Query: 87 EKKYVHRVYDAIAPHFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGKYLGLNPDCFF- 145
+++ A +F + V F G+ +L+ G G + + F
Sbjct: 9 DQEIKDTAGHKYAYNFDFDVMHPF-MVRAFTPFFRPGN-LLELGSFKGDFTSRLQEHFND 66
Query: 146 -VGCDISPSLIKICVDR---GHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKA 201
+ S I R G + + + + D + VL H+
Sbjct: 67 ITCVEASEEAISHAQGRLKDGITYIHSRFEDAQLPRRY-DNIVLTHVLEHI---DDPVAL 122
Query: 202 IEELV-RVVKKGSLVLITV 219
++ + + +G + +
Sbjct: 123 LKRINDDWLAEGGRLFLVC 141
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} Length = 235 | Back alignment and structure |
|---|
Score = 41.9 bits (98), Expect = 1e-04
Identities = 22/121 (18%), Positives = 39/121 (32%), Gaps = 15/121 (12%)
Query: 118 NSLPSGSLVLDAGCGNG---KYLGLNPDCFFVGCDISPSLIKICVDR--------GHEVL 166
+SLP G L GCG G + +P+ F VG DIS S + + +
Sbjct: 63 SSLPLGR-ALVPGCGGGHDVVAM-ASPERFVVGLDISESALAKANETYGSSPKAEYFSFV 120
Query: 167 VADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQED 226
D F D + R + + ++K ++ ++ +
Sbjct: 121 KEDVFTWRPTELF-DLIFDYVFFCAIE-PEMRPAWAKSMYELLKPDGELITLMYPITDHV 178
Query: 227 K 227
Sbjct: 179 G 179
|
| >3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* Length = 253 | Back alignment and structure |
|---|
Score = 42.1 bits (98), Expect = 2e-04
Identities = 34/169 (20%), Positives = 58/169 (34%), Gaps = 13/169 (7%)
Query: 84 PELEKKYVHRVYDAIAPHFSST-RFAKWPKVATFLNSLPSGSLVLDAGCG-NGKYLGLNP 141
L V + A++ H S+ R A+ + F+ S + VLD CG N L
Sbjct: 69 AALSAGDVKK---ALSLHASTKERLAELDTLYDFIFSAETPRRVLDIACGLNPLALYERG 125
Query: 142 DCFFVGCDISPSLIKIC------VDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTE 195
GCDI L + D + D + P ++ GD A+ +L L E
Sbjct: 126 IASVWGCDIHQGLGDVITPFAREKDWDFTFALQDVLCAP-PAEAGDLALIFKLLPLLERE 184
Query: 196 SRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEW 244
+ A+ L + V ++ K + + + +
Sbjct: 185 -QAGSAMALLQSLNTPRMAVSFPTRSLGGRGKGMEANYAAWFEGGLPAE 232
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} Length = 302 | Back alignment and structure |
|---|
Score = 41.3 bits (96), Expect = 3e-04
Identities = 25/154 (16%), Positives = 42/154 (27%), Gaps = 32/154 (20%)
Query: 121 PSGSLVLDAGCGNG----KYLGLNPDCFFVGCDISPSLIKICVDR--------------- 161
+ VL GNG KY V D I +R
Sbjct: 47 SNKRKVLAIDFGNGADLEKYFYGEIA-LLVATDPDADAIARGNERYNKLNSGIKTKYYKF 105
Query: 162 --GHEVLVADAVNLPYRSDFG----DAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLV 215
E + +D R F + +H+ + L + G V
Sbjct: 106 DYIQETIRSDTFVSSVREVFYFGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKV 165
Query: 216 LIT------VWAVEQEDKSLVTKWTPLTQKYVEE 243
LIT + + + ++ K P ++ Y+
Sbjct: 166 LITTMDGDKLSKLTDKKTFIIHKNLPSSENYMSV 199
|
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} Length = 235 | Back alignment and structure |
|---|
Score = 40.8 bits (96), Expect = 3e-04
Identities = 25/133 (18%), Positives = 36/133 (27%), Gaps = 31/133 (23%)
Query: 92 HRVYDAIAPHFSSTRFAKWPKV------ATFLNSLPSGSLVLDAGCGNGKYL----GLNP 141
+ + P F + + D GCG G L L P
Sbjct: 13 EMDWSELYPEFFAPLTQNQSHDDPKDKKEKRAQAQV---EFADIGCGYGGLLVELSPLFP 69
Query: 142 DCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKA 201
D +G +I + DR + A A +IA L A
Sbjct: 70 DTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQ----------NIACLRS--------NA 111
Query: 202 IEELVRVVKKGSL 214
++ L KG L
Sbjct: 112 MKHLPNFFYKGQL 124
|
| >1im8_A YECO; methyltransferase, adenosylhomocysteine, structural genomics hypothetical protein, structure 2 function project, S2F, TR; HET: SAI; 2.20A {Haemophilus influenzae RD} SCOP: c.66.1.14 Length = 244 | Back alignment and structure |
|---|
Score = 41.0 bits (95), Expect = 3e-04
Identities = 22/167 (13%), Positives = 45/167 (26%), Gaps = 15/167 (8%)
Query: 91 VHRVYDAIAPHFSSTRFAKWPKVATFLNS-LPSGSLVLDAGCGNGK------YLGLNPDC 143
V V+ + + + + S V D GC G P+
Sbjct: 26 VAEVFPDMIQRSVPGYSNIITAIGMLAERFVTADSNVYDLGCSRGAATLSARRNINQPNV 85
Query: 144 FFVGCDISPSLIKICVDR------GHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESR 197
+G D S +++ C V + I L L E
Sbjct: 86 KIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILNFTLQFLPPE-D 144
Query: 198 RKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEW 244
R + ++ + +++++ ED + L ++
Sbjct: 145 RIALLTKIYEGLNPNGVLVLSEK-FRFEDTKINHLLIDLHHQFKRAN 190
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 Length = 214 | Back alignment and structure |
|---|
Score = 40.3 bits (95), Expect = 4e-04
Identities = 23/88 (26%), Positives = 37/88 (42%), Gaps = 18/88 (20%)
Query: 109 KWPKVATFLNSLPSGSLVLDAGCGNGKYL----GLNPDCFFVGCDISPSLIKICVDRGHE 164
KW + F N P + ++ G G G ++ NPD ++G DI S++ +D+ E
Sbjct: 33 KWRDL--FGNDNP---IHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLE 87
Query: 165 -------VLVADAVNLPYRSDFGDAAIS 185
+L D +L F D I
Sbjct: 88 VGVPNIKLLWVDGSDLTDY--FEDGEID 113
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 Length = 213 | Back alignment and structure |
|---|
Score = 39.1 bits (92), Expect = 9e-04
Identities = 21/88 (23%), Positives = 36/88 (40%), Gaps = 18/88 (20%)
Query: 109 KWPKVATFLNSLPSGSLVLDAGCGNGKYL----GLNPDCFFVGCDISPSLIKICVDRGHE 164
KW V F N P + ++ G G G+++ NPD ++G ++ S+I V + +
Sbjct: 30 KWNTV--FGNDNP---IHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKD 84
Query: 165 -------VLVADAVNLPYRSDFGDAAIS 185
+L DA L F +
Sbjct: 85 SEAQNVKLLNIDADTLTDV--FEPGEVK 110
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 394 | |||
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 99.81 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 99.81 | |
| 4hg2_A | 257 | Methyltransferase type 11; structural genomics, PS | 99.8 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 99.79 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 99.79 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 99.78 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 99.78 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 99.78 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 99.77 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 99.77 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 99.76 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 99.75 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 99.73 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 99.73 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 99.73 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 99.73 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 99.73 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 99.72 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 99.72 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 99.71 | |
| 2a14_A | 263 | Indolethylamine N-methyltransferase; SGC,INMT, str | 99.7 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 99.7 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 99.69 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 99.69 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 99.69 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 99.69 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 99.67 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 99.67 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 99.67 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 99.66 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 99.66 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 99.66 | |
| 2i62_A | 265 | Nicotinamide N-methyltransferase; structural genom | 99.66 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 99.66 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 99.66 | |
| 4htf_A | 285 | S-adenosylmethionine-dependent methyltransferase; | 99.65 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 99.65 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 99.64 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 99.64 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 99.64 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 99.64 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 99.64 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 99.63 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 99.63 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 99.63 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 99.62 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 99.62 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 99.62 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 99.62 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 99.62 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 99.62 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 99.61 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 99.61 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 99.61 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 99.61 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 99.61 | |
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 99.61 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 99.6 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 99.6 | |
| 2vdw_A | 302 | Vaccinia virus capping enzyme D1 subunit; nucleoti | 99.6 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 99.6 | |
| 2g72_A | 289 | Phenylethanolamine N-methyltransferase; HET: SAM F | 99.6 | |
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 99.59 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 99.59 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 99.59 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 99.58 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 99.58 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 99.57 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 99.57 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 99.57 | |
| 2qe6_A | 274 | Uncharacterized protein TFU_2867; putative methylt | 99.55 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 99.55 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 99.54 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 99.54 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 99.53 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 99.53 | |
| 3bgv_A | 313 | MRNA CAP guanine-N7 methyltransferase; alternative | 99.53 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 99.52 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 99.51 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 99.5 | |
| 1zx0_A | 236 | Guanidinoacetate N-methyltransferase; structural g | 99.5 | |
| 3mcz_A | 352 | O-methyltransferase; adomet_mtases, S-adenosylmeth | 99.49 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 99.48 | |
| 2r3s_A | 335 | Uncharacterized protein; methyltransferase domain, | 99.48 | |
| 3htx_A | 950 | HEN1; HEN1, small RNA methyltransferase, protein-R | 99.47 | |
| 3gwz_A | 369 | MMCR; methyltransferase, mitomycin, S-adenosyl met | 99.45 | |
| 3bkx_A | 275 | SAM-dependent methyltransferase; YP_807781.1, cycl | 99.45 | |
| 1af7_A | 274 | Chemotaxis receptor methyltransferase CHER; chemot | 99.43 | |
| 1nt2_A | 210 | Fibrillarin-like PRE-rRNA processing protein; adeM | 99.43 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 99.42 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 99.42 | |
| 3uwp_A | 438 | Histone-lysine N-methyltransferase, H3 lysine-79; | 99.42 | |
| 2ip2_A | 334 | Probable phenazine-specific methyltransferase; pyo | 99.42 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 99.42 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 99.41 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 99.41 | |
| 3p9n_A | 189 | Possible methyltransferase (methylase); RV2966C, a | 99.41 | |
| 3dxy_A | 218 | TRNA (guanine-N(7)-)-methyltransferase; rossmann f | 99.41 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 99.41 | |
| 1xdz_A | 240 | Methyltransferase GIDB; MCSG, protein structure in | 99.41 | |
| 1yzh_A | 214 | TRNA (guanine-N(7)-)-methyltransferase; alpha-beta | 99.4 | |
| 3dp7_A | 363 | SAM-dependent methyltransferase; structural genomi | 99.4 | |
| 2ld4_A | 176 | Anamorsin; methyltransferase-like fold, alpha/beta | 99.4 | |
| 3mq2_A | 218 | 16S rRNA methyltransferase; methyltranferase, ribo | 99.39 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 99.39 | |
| 3fzg_A | 200 | 16S rRNA methylase; methyltransferase, plasmid, tr | 99.39 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.39 | |
| 2fca_A | 213 | TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac | 99.39 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 99.38 | |
| 3i53_A | 332 | O-methyltransferase; CO-complex, rossmann-like fol | 99.38 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 99.37 | |
| 1x19_A | 359 | CRTF-related protein; methyltransferase, bacterioc | 99.36 | |
| 3reo_A | 368 | (ISO)eugenol O-methyltransferase; directed evoluti | 99.36 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 99.36 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 99.36 | |
| 3p9c_A | 364 | Caffeic acid O-methyltransferase; S-adenosylmethio | 99.36 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 99.36 | |
| 3ckk_A | 235 | TRNA (guanine-N(7)-)-methyltransferase; mettl1, S- | 99.36 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 99.36 | |
| 1qzz_A | 374 | RDMB, aclacinomycin-10-hydroxylase; anthracycline, | 99.35 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 99.35 | |
| 4a6d_A | 353 | Hydroxyindole O-methyltransferase; melatonin, circ | 99.35 | |
| 1fp1_D | 372 | Isoliquiritigenin 2'-O-methyltransferase; protein- | 99.35 | |
| 3giw_A | 277 | Protein of unknown function DUF574; rossmann-fold | 99.35 | |
| 3q87_B | 170 | N6 adenine specific DNA methylase; SAM-methyltrans | 99.34 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 99.34 | |
| 3p2e_A | 225 | 16S rRNA methylase; methyltransferase, transferase | 99.33 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 99.33 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 99.33 | |
| 4dzr_A | 215 | Protein-(glutamine-N5) methyltransferase, release | 99.32 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 99.32 | |
| 3sso_A | 419 | Methyltransferase; macrolide, natural product, ros | 99.32 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 99.31 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 99.31 | |
| 1fp2_A | 352 | Isoflavone O-methyltransferase; protein-product co | 99.3 | |
| 1tw3_A | 360 | COMT, carminomycin 4-O-methyltransferase; anthracy | 99.3 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 99.3 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 99.3 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 99.29 | |
| 2ipx_A | 233 | RRNA 2'-O-methyltransferase fibrillarin; FBL, stru | 99.29 | |
| 1jsx_A | 207 | Glucose-inhibited division protein B; methyltransf | 99.29 | |
| 2plw_A | 201 | Ribosomal RNA methyltransferase, putative; malaria | 99.29 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 99.29 | |
| 3u81_A | 221 | Catechol O-methyltransferase; neurotransmitter deg | 99.29 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 99.28 | |
| 3lst_A | 348 | CALO1 methyltransferase; calicheamicin, enediyne, | 99.27 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 99.27 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 99.27 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 99.27 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 99.26 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 99.26 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 99.26 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 99.25 | |
| 4azs_A | 569 | Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15 | 99.25 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 99.25 | |
| 1ws6_A | 171 | Methyltransferase; structural genomics, riken stru | 99.24 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 99.24 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 99.24 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 99.24 | |
| 3id6_C | 232 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.24 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 99.24 | |
| 3ntv_A | 232 | MW1564 protein; rossmann fold, putative methyltran | 99.23 | |
| 2vdv_E | 246 | TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl | 99.23 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 99.22 | |
| 2fpo_A | 202 | Methylase YHHF; structural genomics, putative meth | 99.22 | |
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 99.21 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 99.21 | |
| 3dou_A | 191 | Ribosomal RNA large subunit methyltransferase J; c | 99.21 | |
| 2b3t_A | 276 | Protein methyltransferase HEMK; translation termin | 99.21 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 99.21 | |
| 1o9g_A | 250 | RRNA methyltransferase; antibiotic resistance, Se- | 99.21 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 99.2 | |
| 1zg3_A | 358 | Isoflavanone 4'-O-methyltransferase; rossman fold, | 99.2 | |
| 1r18_A | 227 | Protein-L-isoaspartate(D-aspartate)-O-methyltrans; | 99.2 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 99.19 | |
| 2bm8_A | 236 | Cephalosporin hydroxylase CMCI; cephamycin biosynt | 99.18 | |
| 2oxt_A | 265 | Nucleoside-2'-O-methyltransferase; flavivirus, vir | 99.18 | |
| 2frn_A | 278 | Hypothetical protein PH0793; structural genomics, | 99.18 | |
| 3c3p_A | 210 | Methyltransferase; NP_951602.1, structural genomic | 99.18 | |
| 2wa2_A | 276 | Non-structural protein 5; transferase, S-adenosyl- | 99.17 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 99.17 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 99.17 | |
| 2b25_A | 336 | Hypothetical protein; structural genomics, methyl | 99.16 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 99.16 | |
| 3lec_A | 230 | NADB-rossmann superfamily protein; PSI, MCSG, stru | 99.16 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 99.15 | |
| 3hp7_A | 291 | Hemolysin, putative; structural genomics, APC64019 | 99.14 | |
| 1u2z_A | 433 | Histone-lysine N-methyltransferase, H3 lysine-79 s | 99.14 | |
| 3gnl_A | 244 | Uncharacterized protein, DUF633, LMOF2365_1472; st | 99.14 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 99.13 | |
| 3a27_A | 272 | TYW2, uncharacterized protein MJ1557; wybutosine m | 99.13 | |
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 99.13 | |
| 3ajd_A | 274 | Putative methyltransferase MJ0026; tRNA, M5C, ross | 99.13 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 99.13 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 99.13 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 99.13 | |
| 3tma_A | 354 | Methyltransferase; thump domain; 2.05A {Thermus th | 99.12 | |
| 1ne2_A | 200 | Hypothetical protein TA1320; structural genomics, | 99.11 | |
| 3kr9_A | 225 | SAM-dependent methyltransferase; class I rossmann- | 99.11 | |
| 2xyq_A | 290 | Putative 2'-O-methyl transferase; transferase-vira | 99.09 | |
| 2yxl_A | 450 | PH0851 protein, 450AA long hypothetical FMU protei | 99.09 | |
| 3r3h_A | 242 | O-methyltransferase, SAM-dependent; structural gen | 99.09 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 99.08 | |
| 2igt_A | 332 | SAM dependent methyltransferase; alpha-beta sandwi | 99.08 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 99.07 | |
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 99.06 | |
| 2h00_A | 254 | Methyltransferase 10 domain containing protein; st | 99.06 | |
| 3opn_A | 232 | Putative hemolysin; structural genomics, PSI-2, pr | 99.06 | |
| 3lcv_B | 281 | Sisomicin-gentamicin resistance methylase SGM; ant | 99.05 | |
| 4hc4_A | 376 | Protein arginine N-methyltransferase 6; HRMT1L6, S | 99.04 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 99.04 | |
| 3gjy_A | 317 | Spermidine synthase; APC62791, structural genomics | 99.03 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 99.03 | |
| 1sqg_A | 429 | SUN protein, FMU protein; rossmann-fold, mixed bet | 99.03 | |
| 2p41_A | 305 | Type II methyltransferase; vizier, viral enzymes i | 99.03 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 99.0 | |
| 1xj5_A | 334 | Spermidine synthase 1; structural genomics, protei | 99.0 | |
| 3frh_A | 253 | 16S rRNA methylase; methyltransferase domain, heli | 99.0 | |
| 1uir_A | 314 | Polyamine aminopropyltransferase; spermidien synth | 98.99 | |
| 2frx_A | 479 | Hypothetical protein YEBU; rossmann-type S-adenosy | 98.98 | |
| 2o07_A | 304 | Spermidine synthase; structural genomics, structur | 98.98 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 98.98 | |
| 2qm3_A | 373 | Predicted methyltransferase; putative methyltransf | 98.97 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 98.97 | |
| 1zq9_A | 285 | Probable dimethyladenosine transferase; SGC, struc | 98.96 | |
| 2i7c_A | 283 | Spermidine synthase; transferase, structural genom | 98.96 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 98.95 | |
| 2pt6_A | 321 | Spermidine synthase; transferase, structural genom | 98.94 | |
| 3m6w_A | 464 | RRNA methylase; rRNA methyltransferase, 5-methylcy | 98.94 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 98.93 | |
| 2b2c_A | 314 | Spermidine synthase; beta-alpha, transferase; 2.50 | 98.93 | |
| 2f8l_A | 344 | Hypothetical protein LMO1582; structural genomics, | 98.92 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 98.92 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 98.88 | |
| 1wxx_A | 382 | TT1595, hypothetical protein TTHA1280; thermus the | 98.87 | |
| 2as0_A | 396 | Hypothetical protein PH1915; RNA methyltransferase | 98.87 | |
| 2cmg_A | 262 | Spermidine synthase; transferase, putrescine amino | 98.87 | |
| 4dmg_A | 393 | Putative uncharacterized protein TTHA1493; rRNA, m | 98.87 | |
| 3tm4_A | 373 | TRNA (guanine N2-)-methyltransferase TRM14; rossma | 98.87 | |
| 3m4x_A | 456 | NOL1/NOP2/SUN family protein; mtase domain, PUA do | 98.85 | |
| 2yx1_A | 336 | Hypothetical protein MJ0883; methyl transferase, t | 98.83 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 98.81 | |
| 2b78_A | 385 | Hypothetical protein SMU.776; structure genomics, | 98.8 | |
| 3k6r_A | 278 | Putative transferase PH0793; structural genomics, | 98.8 | |
| 3c0k_A | 396 | UPF0064 protein YCCW; PUA domain, adoMet dependent | 98.79 | |
| 1qam_A | 244 | ERMC' methyltransferase; rRNA methyltransferase ER | 98.76 | |
| 1yub_A | 245 | Ermam, rRNA methyltransferase; MLS antibiotics; NM | 98.75 | |
| 2h1r_A | 299 | Dimethyladenosine transferase, putative; SGC toron | 98.72 | |
| 2ih2_A | 421 | Modification methylase TAQI; DNA, DNA methyltransf | 98.67 | |
| 2jjq_A | 425 | Uncharacterized RNA methyltransferase pyrab10780; | 98.65 | |
| 2okc_A | 445 | Type I restriction enzyme stysji M protein; NP_813 | 98.63 | |
| 2b9e_A | 309 | NOL1/NOP2/SUN domain family, member 5 isoform 2; m | 98.58 | |
| 1uwv_A | 433 | 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m | 98.57 | |
| 3gru_A | 295 | Dimethyladenosine transferase; rossman fold, ribos | 98.54 | |
| 3k0b_A | 393 | Predicted N6-adenine-specific DNA methylase; methy | 98.52 | |
| 3ldg_A | 384 | Putative uncharacterized protein SMU.472; YPSC, me | 98.5 | |
| 3ldu_A | 385 | Putative methylase; structural genomics, PSI-2, pr | 98.47 | |
| 3tqs_A | 255 | Ribosomal RNA small subunit methyltransferase A; p | 98.43 | |
| 2qfm_A | 364 | Spermine synthase; spermidine aminopropyltransfera | 98.43 | |
| 3evf_A | 277 | RNA-directed RNA polymerase NS5; NS5 methyltransfe | 98.37 | |
| 3fut_A | 271 | Dimethyladenosine transferase; methyltransferase, | 98.34 | |
| 3b5i_A | 374 | S-adenosyl-L-methionine:salicylic acid carboxyl me | 98.29 | |
| 2ar0_A | 541 | M.ecoki, type I restriction enzyme ecoki M protein | 98.27 | |
| 3ftd_A | 249 | Dimethyladenosine transferase; KSGA, rossmann-like | 98.26 | |
| 3bt7_A | 369 | TRNA (uracil-5-)-methyltransferase; methyluridine, | 98.24 | |
| 2dul_A | 378 | N(2),N(2)-dimethylguanosine tRNA methyltransferas; | 98.19 | |
| 2r6z_A | 258 | UPF0341 protein in RSP 3' region; alpha-beta prote | 98.17 | |
| 2efj_A | 384 | 3,7-dimethylxanthine methyltransferase; SAM-depend | 98.14 | |
| 3lkd_A | 542 | Type I restriction-modification system methyltrans | 98.13 | |
| 3axs_A | 392 | Probable N(2),N(2)-dimethylguanosine tRNA methylt | 98.13 | |
| 1qyr_A | 252 | KSGA, high level kasugamycin resistance protein, S | 98.13 | |
| 3uzu_A | 279 | Ribosomal RNA small subunit methyltransferase A; s | 98.11 | |
| 1m6y_A | 301 | S-adenosyl-methyltransferase MRAW; SAM-dependent m | 98.11 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 98.09 | |
| 1m6e_X | 359 | S-adenosyl-L-methionnine:salicylic acid carboxyl m | 98.09 | |
| 3ua3_A | 745 | Protein arginine N-methyltransferase 5; TIM-barrel | 98.06 | |
| 4gqb_A | 637 | Protein arginine N-methyltransferase 5; TIM barrel | 98.04 | |
| 3khk_A | 544 | Type I restriction-modification system methylation | 97.98 | |
| 3gcz_A | 282 | Polyprotein; flavivirus, RNA capping, methyltransf | 97.92 | |
| 3o4f_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 97.92 | |
| 2k4m_A | 153 | TR8_protein, UPF0146 protein MTH_1000; alpha+beta, | 97.86 | |
| 3cvo_A | 202 | Methyltransferase-like protein of unknown functio; | 97.81 | |
| 3ll7_A | 410 | Putative methyltransferase; methytransferase, stru | 97.8 | |
| 4fzv_A | 359 | Putative methyltransferase NSUN4; mterf fold, meth | 97.74 | |
| 3eld_A | 300 | Methyltransferase; flavivirus, RNA capping, guanyl | 97.68 | |
| 3s1s_A | 878 | Restriction endonuclease bpusi; PD--(D/E)XK cataly | 97.65 | |
| 2px2_A | 269 | Genome polyprotein [contains: capsid protein C (co | 97.65 | |
| 2oyr_A | 258 | UPF0341 protein YHIQ; alpha-beta protein, structur | 97.62 | |
| 4auk_A | 375 | Ribosomal RNA large subunit methyltransferase M; Y | 97.61 | |
| 2qy6_A | 257 | UPF0209 protein YFCK; structural genomics, unknown | 97.56 | |
| 3lkz_A | 321 | Non-structural protein 5; flavivirus, methyltransf | 97.37 | |
| 3ufb_A | 530 | Type I restriction-modification system methyltran | 97.22 | |
| 3c6k_A | 381 | Spermine synthase; spermidine aminopropyltransfera | 97.2 | |
| 3p8z_A | 267 | Mtase, non-structural protein 5; methyltransferase | 97.02 | |
| 3tka_A | 347 | Ribosomal RNA small subunit methyltransferase H; H | 96.85 | |
| 2wk1_A | 282 | NOVP; transferase, O-methyltransferase, novobiocin | 96.83 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 96.79 | |
| 1wg8_A | 285 | Predicted S-adenosylmethionine-dependent methyltra | 96.77 | |
| 3r24_A | 344 | NSP16, 2'-O-methyl transferase; methyltransferase, | 96.53 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 96.15 | |
| 1rjd_A | 334 | PPM1P, carboxy methyl transferase for protein phos | 94.79 | |
| 2dph_A | 398 | Formaldehyde dismutase; dismutation of aldehydes, | 94.77 | |
| 1kol_A | 398 | Formaldehyde dehydrogenase; oxidoreductase; HET: N | 94.11 | |
| 1f8f_A | 371 | Benzyl alcohol dehydrogenase; rossmann fold, oxido | 93.91 | |
| 1pqw_A | 198 | Polyketide synthase; rossmann fold, dimer, structu | 93.76 | |
| 3two_A | 348 | Mannitol dehydrogenase; cinnamyl-alcohol dehydroge | 93.61 | |
| 1e3j_A | 352 | NADP(H)-dependent ketose reductase; oxidoreductase | 93.1 | |
| 1pl8_A | 356 | Human sorbitol dehydrogenase; NAD, oxidoreductase; | 92.85 | |
| 3s2e_A | 340 | Zinc-containing alcohol dehydrogenase superfamily; | 92.84 | |
| 3jv7_A | 345 | ADH-A; dehydrogenase, nucleotide binding, rossmann | 92.81 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 92.75 | |
| 4ej6_A | 370 | Putative zinc-binding dehydrogenase; structural ge | 92.68 | |
| 1v3u_A | 333 | Leukotriene B4 12- hydroxydehydrogenase/prostaglan | 92.34 | |
| 1rjw_A | 339 | ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD | 92.32 | |
| 1jvb_A | 347 | NAD(H)-dependent alcohol dehydrogenase; archaeon, | 92.01 | |
| 1i4w_A | 353 | Mitochondrial replication protein MTF1; mitochondr | 91.79 | |
| 2hcy_A | 347 | Alcohol dehydrogenase 1; tetramer of asymmetric di | 91.72 | |
| 2uyo_A | 310 | Hypothetical protein ML2640; putative methyltransf | 91.66 | |
| 3fpc_A | 352 | NADP-dependent alcohol dehydrogenase; oxydoreducta | 91.51 | |
| 1uuf_A | 369 | YAHK, zinc-type alcohol dehydrogenase-like protein | 91.29 | |
| 1cdo_A | 374 | Alcohol dehydrogenase; oxidoreductase, oxidoreduct | 90.85 | |
| 3goh_A | 315 | Alcohol dehydrogenase, zinc-containing; NP_718042. | 90.81 | |
| 2jhf_A | 374 | Alcohol dehydrogenase E chain; oxidoreductase, met | 90.51 | |
| 3uog_A | 363 | Alcohol dehydrogenase; structural genomics, protei | 90.5 | |
| 3vyw_A | 308 | MNMC2; tRNA wobble uridine, modification enzyme, g | 89.98 | |
| 1p0f_A | 373 | NADP-dependent alcohol dehydrogenase; ADH topology | 89.93 | |
| 2h6e_A | 344 | ADH-4, D-arabinose 1-dehydrogenase; rossman fold, | 89.91 | |
| 2j3h_A | 345 | NADP-dependent oxidoreductase P1; double bond redu | 89.64 | |
| 1e3i_A | 376 | Alcohol dehydrogenase, class II; HET: NAD; 2.08A { | 89.49 | |
| 2fzw_A | 373 | Alcohol dehydrogenase class III CHI chain; S-nitro | 89.22 | |
| 1yb5_A | 351 | Quinone oxidoreductase; medium-chain dehydrogenase | 89.11 | |
| 4eez_A | 348 | Alcohol dehydrogenase 1; site-saturation mutagenes | 89.09 | |
| 3gms_A | 340 | Putative NADPH:quinone reductase; structural genom | 88.96 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 88.95 | |
| 4b7c_A | 336 | Probable oxidoreductase; NADP cofactor, rossmann f | 88.7 | |
| 4dvj_A | 363 | Putative zinc-dependent alcohol dehydrogenase Pro; | 88.69 | |
| 2eih_A | 343 | Alcohol dehydrogenase; zinc ION binding protein, s | 88.24 | |
| 3uko_A | 378 | Alcohol dehydrogenase class-3; alcohol dehydrogena | 88.07 | |
| 2b5w_A | 357 | Glucose dehydrogenase; nucleotide binding motif, o | 87.83 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 87.36 | |
| 2d8a_A | 348 | PH0655, probable L-threonine 3-dehydrogenase; pyro | 87.36 | |
| 3m6i_A | 363 | L-arabinitol 4-dehydrogenase; medium chain dehydro | 87.23 | |
| 2cdc_A | 366 | Glucose dehydrogenase glucose 1-dehydrogenase, DHG | 87.16 | |
| 1piw_A | 360 | Hypothetical zinc-type alcohol dehydrogenase- like | 86.28 | |
| 1qor_A | 327 | Quinone oxidoreductase; HET: NAP; 2.20A {Escherich | 85.65 | |
| 4eye_A | 342 | Probable oxidoreductase; structural genomics, niai | 85.19 | |
| 1wly_A | 333 | CAAR, 2-haloacrylate reductase; NADPH-dependent ox | 85.08 | |
| 3ip1_A | 404 | Alcohol dehydrogenase, zinc-containing; structural | 85.04 | |
| 2c0c_A | 362 | Zinc binding alcohol dehydrogenase, domain contain | 84.91 | |
| 1iz0_A | 302 | Quinone oxidoreductase; APO-enzyme, riken structur | 84.83 | |
| 3qwb_A | 334 | Probable quinone oxidoreductase; rossmann fold, qu | 84.59 | |
| 3fbg_A | 346 | Putative arginate lyase; structural genomics, unkn | 84.48 | |
| 2j8z_A | 354 | Quinone oxidoreductase; medium-chain dehydrogenase | 84.34 | |
| 3jyn_A | 325 | Quinone oxidoreductase; rossmann fold, protein-NAD | 84.32 | |
| 4a2c_A | 346 | Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc | 83.68 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 83.66 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 80.9 | |
| 3gaz_A | 343 | Alcohol dehydrogenase superfamily protein; oxidore | 80.81 | |
| 2zb4_A | 357 | Prostaglandin reductase 2; rossmann fold, alternat | 80.68 | |
| 3krt_A | 456 | Crotonyl COA reductase; structural genomics, prote | 80.27 |
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=4e-20 Score=175.27 Aligned_cols=101 Identities=18% Similarity=0.332 Sum_probs=87.8
Q ss_pred CCCCCCEEEEEcCccCcccc----c--CCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeecCCCCCCCCCccEEE
Q 016157 119 SLPSGSLVLDAGCGNGKYLG----L--NPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAI 184 (394)
Q Consensus 119 ~l~~g~~VLDvGCG~G~~l~----~--~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~lp~~~~~fD~Vi 184 (394)
.+++|.+|||||||+|.++. . .++++|+|+|+|+.|++.|+++ +++++++|+.++|+ +.||+|+
T Consensus 67 ~~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~~--~~~d~v~ 144 (261)
T 4gek_A 67 FVQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAI--ENASMVV 144 (261)
T ss_dssp HCCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCCC--CSEEEEE
T ss_pred hCCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeecccccccc--cccccce
Confidence 37899999999999998642 2 4678999999999999999986 47899999999987 4599999
Q ss_pred ehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCc
Q 016157 185 SIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAV 222 (394)
Q Consensus 185 ~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~ 222 (394)
++.++||++..+ +..+|++++++|||||+|++.....
T Consensus 145 ~~~~l~~~~~~~-~~~~l~~i~~~LkpGG~lii~e~~~ 181 (261)
T 4gek_A 145 LNFTLQFLEPSE-RQALLDKIYQGLNPGGALVLSEKFS 181 (261)
T ss_dssp EESCGGGSCHHH-HHHHHHHHHHHEEEEEEEEEEEEBC
T ss_pred eeeeeeecCchh-HhHHHHHHHHHcCCCcEEEEEeccC
Confidence 999999998655 6789999999999999999987544
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.81 E-value=8.3e-20 Score=165.96 Aligned_cols=129 Identities=24% Similarity=0.295 Sum_probs=110.2
Q ss_pred HHHHHHHHhhccccccccccchHHHHHHHcCCCCCCEEEEEcCccCccccc--CCCcEEEEEeCCHHHHHHHHHc-CCeE
Q 016157 89 KYVHRVYDAIAPHFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR-GHEV 165 (394)
Q Consensus 89 ~~v~~~Yd~~a~~y~~~~~~~~~~l~~~l~~l~~g~~VLDvGCG~G~~l~~--~~~~~v~gvD~S~~~l~~a~~~-~i~~ 165 (394)
....++|+..+..|+..... ...+..++..++++.+|||||||+|.++.. ..+..++|+|+|+.+++.|+++ ++.+
T Consensus 11 ~~~~~~~~~~~~~y~~~~~~-~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~ 89 (211)
T 3e23_A 11 DDTLRFYRGNATAYAERQPR-SATLTKFLGELPAGAKILELGCGAGYQAEAMLAAGFDVDATDGSPELAAEASRRLGRPV 89 (211)
T ss_dssp HHHHHHHHHSHHHHTTCCCC-CHHHHHHHTTSCTTCEEEESSCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHHHHHhhccch-hHHHHHHHHhcCCCCcEEEECCCCCHHHHHHHHcCCeEEEECCCHHHHHHHHHhcCCce
Confidence 45667788888877765443 667788888888999999999999997542 3367999999999999999998 8999
Q ss_pred EEeecCCCCCCCCCccEEEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 016157 166 LVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (394)
Q Consensus 166 ~~~D~~~lp~~~~~fD~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~ 220 (394)
+.+|+..++ .+++||+|++..+++|++... +..+|+++.++|||||++++.++
T Consensus 90 ~~~d~~~~~-~~~~fD~v~~~~~l~~~~~~~-~~~~l~~~~~~LkpgG~l~~~~~ 142 (211)
T 3e23_A 90 RTMLFHQLD-AIDAYDAVWAHACLLHVPRDE-LADVLKLIWRALKPGGLFYASYK 142 (211)
T ss_dssp EECCGGGCC-CCSCEEEEEECSCGGGSCHHH-HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EEeeeccCC-CCCcEEEEEecCchhhcCHHH-HHHHHHHHHHhcCCCcEEEEEEc
Confidence 999999998 688999999999999998433 78999999999999999999864
|
| >4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} | Back alignment and structure |
|---|
Probab=99.80 E-value=4.9e-20 Score=174.31 Aligned_cols=129 Identities=19% Similarity=0.209 Sum_probs=97.5
Q ss_pred HHHHHhhccccccccccchHHHHHHHcC-CCCCCEEEEEcCccCccccc--CCCcEEEEEeCCHHHHHHHHHc-CCeEEE
Q 016157 92 HRVYDAIAPHFSSTRFAKWPKVATFLNS-LPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR-GHEVLV 167 (394)
Q Consensus 92 ~~~Yd~~a~~y~~~~~~~~~~l~~~l~~-l~~g~~VLDvGCG~G~~l~~--~~~~~v~gvD~S~~~l~~a~~~-~i~~~~ 167 (394)
.+.|+..+..|+..|....+.+.+++.. .+.+.+|||||||+|.++.. ..+.+|+|+|+|+.|++.|+++ ++.+++
T Consensus 8 ~d~F~~~a~~Y~~~Rp~yp~~l~~~l~~~~~~~~~vLDvGcGtG~~~~~l~~~~~~v~gvD~s~~ml~~a~~~~~v~~~~ 87 (257)
T 4hg2_A 8 KDHFTPVADAYRAFRPRYPRALFRWLGEVAPARGDALDCGCGSGQASLGLAEFFERVHAVDPGEAQIRQALRHPRVTYAV 87 (257)
T ss_dssp ------------CCCCCCCHHHHHHHHHHSSCSSEEEEESCTTTTTHHHHHTTCSEEEEEESCHHHHHTCCCCTTEEEEE
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhcCCCCCEEEEcCCCCHHHHHHHHhCCEEEEEeCcHHhhhhhhhcCCceeeh
Confidence 4567788888886664444556555543 45567999999999997643 4567999999999999998776 899999
Q ss_pred eecCCCCCCCCCccEEEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCccc
Q 016157 168 ADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQ 224 (394)
Q Consensus 168 ~D~~~lp~~~~~fD~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~~~ 224 (394)
+|++++|+++++||+|++..++||+. +.++++++.|+|||||+|++..+....
T Consensus 88 ~~~e~~~~~~~sfD~v~~~~~~h~~~----~~~~~~e~~rvLkpgG~l~~~~~~~~~ 140 (257)
T 4hg2_A 88 APAEDTGLPPASVDVAIAAQAMHWFD----LDRFWAELRRVARPGAVFAAVTYGLTR 140 (257)
T ss_dssp CCTTCCCCCSSCEEEEEECSCCTTCC----HHHHHHHHHHHEEEEEEEEEEEECCCB
T ss_pred hhhhhhcccCCcccEEEEeeehhHhh----HHHHHHHHHHHcCCCCEEEEEECCCCC
Confidence 99999999999999999999998884 578999999999999999998876543
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=1.3e-18 Score=157.90 Aligned_cols=134 Identities=17% Similarity=0.058 Sum_probs=111.4
Q ss_pred HHHHHHHHHHhhcccccccc----ccchHHHHHHHcCCCCCCEEEEEcCccCccccc--CCCcEEEEEeCCHHHHHHHHH
Q 016157 87 EKKYVHRVYDAIAPHFSSTR----FAKWPKVATFLNSLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVD 160 (394)
Q Consensus 87 ~~~~v~~~Yd~~a~~y~~~~----~~~~~~l~~~l~~l~~g~~VLDvGCG~G~~l~~--~~~~~v~gvD~S~~~l~~a~~ 160 (394)
..+...++|+..+..|+... ......+...+..++++.+|||||||+|.++.. ..+..++|+|+|+.+++.|++
T Consensus 7 ~~~~~~~~~~~~a~~y~~~~~~~~~~~~~~~~~~l~~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~ 86 (218)
T 3ou2_A 7 LIESQLSYYRARASEYDATFVPYMDSAAPAALERLRAGNIRGDVLELASGTGYWTRHLSGLADRVTALDGSAEMIAEAGR 86 (218)
T ss_dssp HHHHHHHHHHHHGGGHHHHHHHHHTTTHHHHHHHHTTTTSCSEEEEESCTTSHHHHHHHHHSSEEEEEESCHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhcCCCCCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHh
Confidence 34567788999888887521 223456777777788889999999999997542 226799999999999999988
Q ss_pred c---CCeEEEeecCCCCCCCCCccEEEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCc
Q 016157 161 R---GHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAV 222 (394)
Q Consensus 161 ~---~i~~~~~D~~~lp~~~~~fD~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~ 222 (394)
. +++++.+|+.++ +.+++||+|++..+++|++++. ...+|+++.++|||||.+++.++..
T Consensus 87 ~~~~~~~~~~~d~~~~-~~~~~~D~v~~~~~l~~~~~~~-~~~~l~~~~~~L~pgG~l~~~~~~~ 149 (218)
T 3ou2_A 87 HGLDNVEFRQQDLFDW-TPDRQWDAVFFAHWLAHVPDDR-FEAFWESVRSAVAPGGVVEFVDVTD 149 (218)
T ss_dssp GCCTTEEEEECCTTSC-CCSSCEEEEEEESCGGGSCHHH-HHHHHHHHHHHEEEEEEEEEEEECC
T ss_pred cCCCCeEEEecccccC-CCCCceeEEEEechhhcCCHHH-HHHHHHHHHHHcCCCeEEEEEeCCC
Confidence 6 478999999998 7789999999999999998743 5899999999999999999998765
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.79 E-value=8.3e-19 Score=161.69 Aligned_cols=113 Identities=19% Similarity=0.296 Sum_probs=95.8
Q ss_pred hHHHHHHHcCCCCCCEEEEEcCccCcccc----cCCCcEEEEEeCCHHHHHHHHHc-----CCeEEEeecCCCCCCCCCc
Q 016157 110 WPKVATFLNSLPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR-----GHEVLVADAVNLPYRSDFG 180 (394)
Q Consensus 110 ~~~l~~~l~~l~~g~~VLDvGCG~G~~l~----~~~~~~v~gvD~S~~~l~~a~~~-----~i~~~~~D~~~lp~~~~~f 180 (394)
+..+..++....++.+|||||||+|.++. ..++..++|+|+|+.+++.|+++ +++++++|+.++++. ++|
T Consensus 32 ~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~-~~f 110 (234)
T 3dtn_A 32 YGVSVSIASVDTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNLKVKYIEADYSKYDFE-EKY 110 (234)
T ss_dssp HHHHHHTCCCSCSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSCTTEEEEESCTTTCCCC-SCE
T ss_pred HHHHHHHhhcCCCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccCCCEEEEeCchhccCCC-CCc
Confidence 34455555556678999999999999753 35688999999999999999987 689999999999886 899
Q ss_pred cEEEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCccc
Q 016157 181 DAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQ 224 (394)
Q Consensus 181 D~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~~~ 224 (394)
|+|++..+++|+++.+ ...+|+++.++|||||++++.++....
T Consensus 111 D~v~~~~~l~~~~~~~-~~~~l~~~~~~LkpgG~l~~~~~~~~~ 153 (234)
T 3dtn_A 111 DMVVSALSIHHLEDED-KKELYKRSYSILKESGIFINADLVHGE 153 (234)
T ss_dssp EEEEEESCGGGSCHHH-HHHHHHHHHHHEEEEEEEEEEEECBCS
T ss_pred eEEEEeCccccCCHHH-HHHHHHHHHHhcCCCcEEEEEEecCCC
Confidence 9999999999997643 457999999999999999999876543
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=99.78 E-value=7.5e-19 Score=160.29 Aligned_cols=130 Identities=18% Similarity=0.260 Sum_probs=92.9
Q ss_pred HHHHHHhhcccccccc----------ccchHHHHHHHcCCCCCCEEEEEcCccCccccc--CCCcEEEEEeCCHHHHHHH
Q 016157 91 VHRVYDAIAPHFSSTR----------FAKWPKVATFLNSLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKIC 158 (394)
Q Consensus 91 v~~~Yd~~a~~y~~~~----------~~~~~~l~~~l~~l~~g~~VLDvGCG~G~~l~~--~~~~~v~gvD~S~~~l~~a 158 (394)
+.++|+.++..|+... ...+..+...+.. .++.+|||||||+|.++.. ..+..++|+|+|+.+++.|
T Consensus 5 ~~~~f~~~a~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a 83 (220)
T 3hnr_A 5 FNGLFDEWAHTYDSFVQGEDIQYKEVFAHYEDILEDVVN-KSFGNVLEFGVGTGNLTNKLLLAGRTVYGIEPSREMRMIA 83 (220)
T ss_dssp -------------------CCTTTTTTTTHHHHHHHHHH-TCCSEEEEECCTTSHHHHHHHHTTCEEEEECSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcchHhHHHHHHHHHHHHHHhhc-cCCCeEEEeCCCCCHHHHHHHhCCCeEEEEeCCHHHHHHH
Confidence 3456777777776532 1223344444432 3678999999999997542 2367999999999999999
Q ss_pred HHc---CCeEEEeecCCCCCCCCCccEEEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCcc
Q 016157 159 VDR---GHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVE 223 (394)
Q Consensus 159 ~~~---~i~~~~~D~~~lp~~~~~fD~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~~ 223 (394)
+++ +++++.+|+.++++. ++||+|++..+++|+++.. ...+|+++.++|||||.+++.++...
T Consensus 84 ~~~~~~~~~~~~~d~~~~~~~-~~fD~v~~~~~l~~~~~~~-~~~~l~~~~~~LkpgG~l~i~~~~~~ 149 (220)
T 3hnr_A 84 KEKLPKEFSITEGDFLSFEVP-TSIDTIVSTYAFHHLTDDE-KNVAIAKYSQLLNKGGKIVFADTIFA 149 (220)
T ss_dssp HHHSCTTCCEESCCSSSCCCC-SCCSEEEEESCGGGSCHHH-HHHHHHHHHHHSCTTCEEEEEEECBS
T ss_pred HHhCCCceEEEeCChhhcCCC-CCeEEEEECcchhcCChHH-HHHHHHHHHHhcCCCCEEEEEecccc
Confidence 988 789999999999987 8999999999999998743 34599999999999999999986543
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=1.7e-18 Score=162.67 Aligned_cols=103 Identities=19% Similarity=0.304 Sum_probs=90.6
Q ss_pred CCCCCCEEEEEcCccCccccc--CCCcEEEEEeCCHHHHHHHHHc--CCeEEEeecCCCCCCCCCccEEEehh-hhhhcC
Q 016157 119 SLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR--GHEVLVADAVNLPYRSDFGDAAISIA-VLHHLS 193 (394)
Q Consensus 119 ~l~~g~~VLDvGCG~G~~l~~--~~~~~v~gvD~S~~~l~~a~~~--~i~~~~~D~~~lp~~~~~fD~Vi~~~-vl~hl~ 193 (394)
.++++.+|||||||+|.++.. ..+..++|+|+|+.+++.|+++ +++++++|+.++++ +++||+|++.. +++|++
T Consensus 47 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~-~~~fD~v~~~~~~l~~~~ 125 (263)
T 3pfg_A 47 HSPKAASLLDVACGTGMHLRHLADSFGTVEGLELSADMLAIARRRNPDAVLHHGDMRDFSL-GRRFSAVTCMFSSIGHLA 125 (263)
T ss_dssp HCTTCCEEEEETCTTSHHHHHHTTTSSEEEEEESCHHHHHHHHHHCTTSEEEECCTTTCCC-SCCEEEEEECTTGGGGSC
T ss_pred hCCCCCcEEEeCCcCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhCCCCEEEECChHHCCc-cCCcCEEEEcCchhhhcC
Confidence 356778999999999998542 3456999999999999999988 79999999999988 78999999998 999998
Q ss_pred ChhHHHHHHHHHHhccccCcEEEEEEcCc
Q 016157 194 TESRRKKAIEELVRVVKKGSLVLITVWAV 222 (394)
Q Consensus 194 ~~~~~~~~L~ei~r~LkpGG~lli~~~~~ 222 (394)
+.+.+..+|+++.++|||||++++..|..
T Consensus 126 ~~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 154 (263)
T 3pfg_A 126 GQAELDAALERFAAHVLPDGVVVVEPWWF 154 (263)
T ss_dssp HHHHHHHHHHHHHHTEEEEEEEEECCCCC
T ss_pred CHHHHHHHHHHHHHhcCCCcEEEEEeccC
Confidence 76668899999999999999999987644
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.78 E-value=2.4e-19 Score=162.54 Aligned_cols=99 Identities=20% Similarity=0.307 Sum_probs=87.6
Q ss_pred CCCCCEEEEEcCccCccccc---CCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeecCCCCCCCCCccEEEehhh
Q 016157 120 LPSGSLVLDAGCGNGKYLGL---NPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISIAV 188 (394)
Q Consensus 120 l~~g~~VLDvGCG~G~~l~~---~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~lp~~~~~fD~Vi~~~v 188 (394)
++++ +|||||||+|.++.. .++..++|+|+|+.+++.|+++ +++++++|+.++++++++||+|++..+
T Consensus 42 ~~~~-~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~ 120 (219)
T 3dlc_A 42 ITAG-TCIDIGSGPGALSIALAKQSDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIPIEDNYADLIVSRGS 120 (219)
T ss_dssp CCEE-EEEEETCTTSHHHHHHHHHSEEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBCSSCTTCEEEEEEESC
T ss_pred CCCC-EEEEECCCCCHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHCCCCcccccEEEECch
Confidence 3455 999999999987532 3677999999999999999887 578999999999998999999999999
Q ss_pred hhhcCChhHHHHHHHHHHhccccCcEEEEEEcCc
Q 016157 189 LHHLSTESRRKKAIEELVRVVKKGSLVLITVWAV 222 (394)
Q Consensus 189 l~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~ 222 (394)
++|+.+ +..+|+++.++|||||++++..+..
T Consensus 121 l~~~~~---~~~~l~~~~~~L~pgG~l~~~~~~~ 151 (219)
T 3dlc_A 121 VFFWED---VATAFREIYRILKSGGKTYIGGGFG 151 (219)
T ss_dssp GGGCSC---HHHHHHHHHHHEEEEEEEEEEECCS
T ss_pred HhhccC---HHHHHHHHHHhCCCCCEEEEEeccC
Confidence 999987 7899999999999999999987543
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.77 E-value=4e-18 Score=155.32 Aligned_cols=106 Identities=28% Similarity=0.383 Sum_probs=91.9
Q ss_pred HHHHHHcCCCCCCEEEEEcCccCccccc-----CCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeecCCCCCCCCC
Q 016157 112 KVATFLNSLPSGSLVLDAGCGNGKYLGL-----NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDF 179 (394)
Q Consensus 112 ~l~~~l~~l~~g~~VLDvGCG~G~~l~~-----~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~lp~~~~~ 179 (394)
.+...+ .+.++.+|||+|||+|.++.. .+...++|+|+|+.+++.|+++ +++++.+|+.++++.+++
T Consensus 28 ~~~~~~-~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 106 (219)
T 3dh0_A 28 KVLKEF-GLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENKIPLPDNT 106 (219)
T ss_dssp HHHHHH-TCCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTTBCSSCSSC
T ss_pred HHHHHh-CCCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCcEEEEecccccCCCCCCC
Confidence 344444 356788999999999997532 3667999999999999999876 488999999999988899
Q ss_pred ccEEEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 016157 180 GDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 221 (394)
Q Consensus 180 fD~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~ 221 (394)
||+|++..+++|+++ +..+|+++.++|||||++++..|.
T Consensus 107 fD~v~~~~~l~~~~~---~~~~l~~~~~~LkpgG~l~i~~~~ 145 (219)
T 3dh0_A 107 VDFIFMAFTFHELSE---PLKFLEELKRVAKPFAYLAIIDWK 145 (219)
T ss_dssp EEEEEEESCGGGCSS---HHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred eeEEEeehhhhhcCC---HHHHHHHHHHHhCCCeEEEEEEec
Confidence 999999999999987 789999999999999999998754
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.77 E-value=3.4e-18 Score=157.83 Aligned_cols=109 Identities=14% Similarity=0.085 Sum_probs=91.7
Q ss_pred HHHHHcCC-CCCCEEEEEcCccCccccc--CCCcEEEEEeCCHHHHHHHHHc------CCeEEEeecCCCCCCCCCccEE
Q 016157 113 VATFLNSL-PSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR------GHEVLVADAVNLPYRSDFGDAA 183 (394)
Q Consensus 113 l~~~l~~l-~~g~~VLDvGCG~G~~l~~--~~~~~v~gvD~S~~~l~~a~~~------~i~~~~~D~~~lp~~~~~fD~V 183 (394)
+..++... +++.+|||||||+|.++.. ..+..++|+|+|+.|++.|+++ ++.++++|+.+++++ ++||+|
T Consensus 27 ~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~-~~fD~v 105 (246)
T 1y8c_A 27 IIEKCVENNLVFDDYLDLACGTGNLTENLCPKFKNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNIN-RKFDLI 105 (246)
T ss_dssp HHHHHHTTTCCTTEEEEETCTTSTTHHHHGGGSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCCS-CCEEEE
T ss_pred HHHHHHHhCCCCCeEEEeCCCCCHHHHHHHHCCCcEEEEECCHHHHHHHHHHHhhcCCCeEEEecccccCCcc-CCceEE
Confidence 34444432 4778999999999997532 3367999999999999999887 689999999998876 889999
Q ss_pred Eehh-hhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCc
Q 016157 184 ISIA-VLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAV 222 (394)
Q Consensus 184 i~~~-vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~ 222 (394)
++.. +++|+++...+..+|+++.++|||||++++.++..
T Consensus 106 ~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 145 (246)
T 1y8c_A 106 TCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFDINSY 145 (246)
T ss_dssp EECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEEEECH
T ss_pred EEcCccccccCCHHHHHHHHHHHHHhcCCCcEEEEEecCH
Confidence 9998 99999775568999999999999999999987654
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} | Back alignment and structure |
|---|
Probab=99.76 E-value=7.9e-18 Score=155.44 Aligned_cols=127 Identities=23% Similarity=0.371 Sum_probs=96.7
Q ss_pred HHhhcccccccc-ccchHHHHH-HHcCCCCCCEEEEEcCccCccccc-CCCcEEEEEeCCHHHHHHHHHc------CCeE
Q 016157 95 YDAIAPHFSSTR-FAKWPKVAT-FLNSLPSGSLVLDAGCGNGKYLGL-NPDCFFVGCDISPSLIKICVDR------GHEV 165 (394)
Q Consensus 95 Yd~~a~~y~~~~-~~~~~~l~~-~l~~l~~g~~VLDvGCG~G~~l~~-~~~~~v~gvD~S~~~l~~a~~~------~i~~ 165 (394)
|+.++..|+... ...+..+.. ++..++++.+|||+|||+|.++.. .....++|+|+|+.+++.|+++ ++++
T Consensus 4 y~~~a~~yd~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~ 83 (243)
T 3d2l_A 4 YEQFAYVYDELMQDVPYPEWVAWVLEQVEPGKRIADIGCGTGTATLLLADHYEVTGVDLSEEMLEIAQEKAMETNRHVDF 83 (243)
T ss_dssp --CTTHHHHHHTTTCCHHHHHHHHHHHSCTTCEEEEESCTTCHHHHHHTTTSEEEEEESCHHHHHHHHHHHHHTTCCCEE
T ss_pred HHHHHHHHHHhhhcccHHHHHHHHHHHcCCCCeEEEecCCCCHHHHHHhhCCeEEEEECCHHHHHHHHHhhhhcCCceEE
Confidence 455555554421 122233322 334567789999999999997532 1117999999999999999876 5899
Q ss_pred EEeecCCCCCCCCCccEEEehh-hhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCc
Q 016157 166 LVADAVNLPYRSDFGDAAISIA-VLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAV 222 (394)
Q Consensus 166 ~~~D~~~lp~~~~~fD~Vi~~~-vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~ 222 (394)
+.+|+.+++++ ++||+|++.. +++|+.+.+.+..+|+++.++|||||++++.++..
T Consensus 84 ~~~d~~~~~~~-~~fD~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 140 (243)
T 3d2l_A 84 WVQDMRELELP-EPVDAITILCDSLNYLQTEADVKQTFDSAARLLTDGGKLLFDVHSP 140 (243)
T ss_dssp EECCGGGCCCS-SCEEEEEECTTGGGGCCSHHHHHHHHHHHHHHEEEEEEEEEEEECH
T ss_pred EEcChhhcCCC-CCcCEEEEeCCchhhcCCHHHHHHHHHHHHHhcCCCeEEEEEcCCH
Confidence 99999998875 7899999987 99999776668899999999999999999988654
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.75 E-value=7.9e-18 Score=154.11 Aligned_cols=106 Identities=22% Similarity=0.327 Sum_probs=90.4
Q ss_pred HHHHHHcCCCCCCEEEEEcCccCcccccCCCcEEEEEeCCHHHHHHHHHcCCeEEEeecCCCCCCCCCccEEEehhhhhh
Q 016157 112 KVATFLNSLPSGSLVLDAGCGNGKYLGLNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHH 191 (394)
Q Consensus 112 ~l~~~l~~l~~g~~VLDvGCG~G~~l~~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~lp~~~~~fD~Vi~~~vl~h 191 (394)
....++..+.++.+|||||||+|.++...... +|+|+|+.+++.|++++++++.+|+.++++.+++||+|++..+++|
T Consensus 37 ~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~--~~vD~s~~~~~~a~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 114 (219)
T 1vlm_A 37 SELQAVKCLLPEGRGVEIGVGTGRFAVPLKIK--IGVEPSERMAEIARKRGVFVLKGTAENLPLKDESFDFALMVTTICF 114 (219)
T ss_dssp HHHHHHHHHCCSSCEEEETCTTSTTHHHHTCC--EEEESCHHHHHHHHHTTCEEEECBTTBCCSCTTCEEEEEEESCGGG
T ss_pred HHHHHHHHhCCCCcEEEeCCCCCHHHHHHHHH--hccCCCHHHHHHHHhcCCEEEEcccccCCCCCCCeeEEEEcchHhh
Confidence 33344444445889999999999986532222 9999999999999999999999999999988889999999999999
Q ss_pred cCChhHHHHHHHHHHhccccCcEEEEEEcCc
Q 016157 192 LSTESRRKKAIEELVRVVKKGSLVLITVWAV 222 (394)
Q Consensus 192 l~~~~~~~~~L~ei~r~LkpGG~lli~~~~~ 222 (394)
+++ +..+|+++.++|||||.+++.++..
T Consensus 115 ~~~---~~~~l~~~~~~L~pgG~l~i~~~~~ 142 (219)
T 1vlm_A 115 VDD---PERALKEAYRILKKGGYLIVGIVDR 142 (219)
T ss_dssp SSC---HHHHHHHHHHHEEEEEEEEEEEECS
T ss_pred ccC---HHHHHHHHHHHcCCCcEEEEEEeCC
Confidence 988 7899999999999999999998754
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.2e-17 Score=160.99 Aligned_cols=105 Identities=19% Similarity=0.174 Sum_probs=91.4
Q ss_pred HcCCCCCCEEEEEcCccCcccc-----cCCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeecCCCCCCCCCccEE
Q 016157 117 LNSLPSGSLVLDAGCGNGKYLG-----LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAA 183 (394)
Q Consensus 117 l~~l~~g~~VLDvGCG~G~~l~-----~~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~lp~~~~~fD~V 183 (394)
...++++.+|||||||+|.++. ..++..|+|+|+|+.+++.|+++ +++++++|+.+++++ ++||+|
T Consensus 113 ~~~l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~v 191 (305)
T 3ocj_A 113 QRHLRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDTR-EGYDLL 191 (305)
T ss_dssp HHHCCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCCCC-SCEEEE
T ss_pred HhhCCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCCcc-CCeEEE
Confidence 3456788999999999999642 35678999999999999999986 278999999999987 999999
Q ss_pred EehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCc
Q 016157 184 ISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAV 222 (394)
Q Consensus 184 i~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~ 222 (394)
+++.+++|+++......+++++.++|||||++++..+..
T Consensus 192 ~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 230 (305)
T 3ocj_A 192 TSNGLNIYEPDDARVTELYRRFWQALKPGGALVTSFLTP 230 (305)
T ss_dssp ECCSSGGGCCCHHHHHHHHHHHHHHEEEEEEEEEECCCC
T ss_pred EECChhhhcCCHHHHHHHHHHHHHhcCCCeEEEEEecCC
Confidence 999999999986655678999999999999999987654
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.73 E-value=7.3e-18 Score=152.87 Aligned_cols=127 Identities=19% Similarity=0.289 Sum_probs=102.8
Q ss_pred HHHhhccccccccccc---h--HHHHHHHc-CCCCCCEEEEEcCccCcccccCCCc-EEEEEeCCHHHHHHHHHc--CCe
Q 016157 94 VYDAIAPHFSSTRFAK---W--PKVATFLN-SLPSGSLVLDAGCGNGKYLGLNPDC-FFVGCDISPSLIKICVDR--GHE 164 (394)
Q Consensus 94 ~Yd~~a~~y~~~~~~~---~--~~l~~~l~-~l~~g~~VLDvGCG~G~~l~~~~~~-~v~gvD~S~~~l~~a~~~--~i~ 164 (394)
+|+.++..|+.-.... + .....++. .++++.+|||||||+|.++... +. .++|+|+|+.+++.|+++ ++.
T Consensus 2 ~fd~~a~~y~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l-~~~~v~~vD~s~~~~~~a~~~~~~~~ 80 (211)
T 2gs9_A 2 PFASLAEAYEAWYGTPLGAYVIAEEERALKGLLPPGESLLEVGAGTGYWLRRL-PYPQKVGVEPSEAMLAVGRRRAPEAT 80 (211)
T ss_dssp TTTTTTTTTTGGGGSHHHHHHHHHHHHHHHTTCCCCSEEEEETCTTCHHHHHC-CCSEEEEECCCHHHHHHHHHHCTTSE
T ss_pred chhhHHHHHHHHhcccchhhhHHHHHHHHHHhcCCCCeEEEECCCCCHhHHhC-CCCeEEEEeCCHHHHHHHHHhCCCcE
Confidence 4666777776532211 1 12223333 3457889999999999986655 66 999999999999999987 799
Q ss_pred EEEeecCCCCCCCCCccEEEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCccc
Q 016157 165 VLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQ 224 (394)
Q Consensus 165 ~~~~D~~~lp~~~~~fD~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~~~ 224 (394)
++++|+.++|+++++||+|++..+++|+++ +..+|+++.++|||||++++.++....
T Consensus 81 ~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~---~~~~l~~~~~~L~pgG~l~i~~~~~~~ 137 (211)
T 2gs9_A 81 WVRAWGEALPFPGESFDVVLLFTTLEFVED---VERVLLEARRVLRPGGALVVGVLEALS 137 (211)
T ss_dssp EECCCTTSCCSCSSCEEEEEEESCTTTCSC---HHHHHHHHHHHEEEEEEEEEEEECTTS
T ss_pred EEEcccccCCCCCCcEEEEEEcChhhhcCC---HHHHHHHHHHHcCCCCEEEEEecCCcC
Confidence 999999999998899999999999999987 789999999999999999999987543
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.73 E-value=2.6e-18 Score=154.87 Aligned_cols=131 Identities=14% Similarity=0.185 Sum_probs=106.1
Q ss_pred HHHHHHHhhcccccccc------ccchHHH-HHHHcCCCCCCEEEEEcCccCccccc--CCCcEEEEEeCCHHHHHHHHH
Q 016157 90 YVHRVYDAIAPHFSSTR------FAKWPKV-ATFLNSLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVD 160 (394)
Q Consensus 90 ~v~~~Yd~~a~~y~~~~------~~~~~~l-~~~l~~l~~g~~VLDvGCG~G~~l~~--~~~~~v~gvD~S~~~l~~a~~ 160 (394)
.+.++|+.++..|+... ...|..+ ..++... +.+|||||||+|.++.. ..+..++|+|+|+.|++.|++
T Consensus 4 ~~~~~y~~~a~~y~~~~~~~~~~~~~~~~~l~~~~~~~--~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~ 81 (203)
T 3h2b_A 4 DVSKAYSSPTFDAEALLGTVISAEDPDRVLIEPWATGV--DGVILDVGSGTGRWTGHLASLGHQIEGLEPATRLVELARQ 81 (203)
T ss_dssp HHHHHHHCTTTCHHHHTCSSCCTTCTTHHHHHHHHHHC--CSCEEEETCTTCHHHHHHHHTTCCEEEECCCHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHhhhhccccHHHHHHHHHHhccC--CCeEEEecCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHH
Confidence 57788999998886431 1223333 3333322 77999999999997542 236699999999999999998
Q ss_pred c--CCeEEEeecCCCCCCCCCccEEEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCcc
Q 016157 161 R--GHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVE 223 (394)
Q Consensus 161 ~--~i~~~~~D~~~lp~~~~~fD~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~~ 223 (394)
+ +++++++|+.++++++++||+|++..+++|++... +..+|+++.++|||||++++.++...
T Consensus 82 ~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~-~~~~l~~~~~~L~pgG~l~i~~~~~~ 145 (203)
T 3h2b_A 82 THPSVTFHHGTITDLSDSPKRWAGLLAWYSLIHMGPGE-LPDALVALRMAVEDGGGLLMSFFSGP 145 (203)
T ss_dssp HCTTSEEECCCGGGGGGSCCCEEEEEEESSSTTCCTTT-HHHHHHHHHHTEEEEEEEEEEEECCS
T ss_pred hCCCCeEEeCcccccccCCCCeEEEEehhhHhcCCHHH-HHHHHHHHHHHcCCCcEEEEEEccCC
Confidence 7 79999999999998889999999999999997433 79999999999999999999987654
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=99.73 E-value=6.4e-18 Score=156.14 Aligned_cols=132 Identities=23% Similarity=0.354 Sum_probs=95.6
Q ss_pred HHHHHHHHhhccccccccccchH------HHHHHHcCCCCCCEEEEEcCccCccccc--CCCcEEEEEeCCHHHHHHHHH
Q 016157 89 KYVHRVYDAIAPHFSSTRFAKWP------KVATFLNSLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVD 160 (394)
Q Consensus 89 ~~v~~~Yd~~a~~y~~~~~~~~~------~l~~~l~~l~~g~~VLDvGCG~G~~l~~--~~~~~v~gvD~S~~~l~~a~~ 160 (394)
+.+.+.|+..+..|+......|. .+..+...++++.+|||||||+|.++.. ..+..++|+|+|+.+++.|++
T Consensus 14 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~ 93 (242)
T 3l8d_A 14 ESAEKKWDSSAEFWNQNSQEMWDSGSRSTIIPFFEQYVKKEAEVLDVGCGDGYGTYKLSRTGYKAVGVDISEVMIQKGKE 93 (242)
T ss_dssp ------------------CHHHHTSTTTTHHHHHHHHSCTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHT
T ss_pred HHHHHHHHhHHHHhhhhhhhccCcccHHHHHHHHHHHcCCCCeEEEEcCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHh
Confidence 45677788888888765443332 2233334467889999999999997542 336799999999999999998
Q ss_pred c----CCeEEEeecCCCCCCCCCccEEEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCcc
Q 016157 161 R----GHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVE 223 (394)
Q Consensus 161 ~----~i~~~~~D~~~lp~~~~~fD~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~~ 223 (394)
+ +++++++|+.++++++++||+|++..+++|+++ +..+|+++.++|||||++++.++...
T Consensus 94 ~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~---~~~~l~~~~~~L~pgG~l~i~~~~~~ 157 (242)
T 3l8d_A 94 RGEGPDLSFIKGDLSSLPFENEQFEAIMAINSLEWTEE---PLRALNEIKRVLKSDGYACIAILGPT 157 (242)
T ss_dssp TTCBTTEEEEECBTTBCSSCTTCEEEEEEESCTTSSSC---HHHHHHHHHHHEEEEEEEEEEEECTT
T ss_pred hcccCCceEEEcchhcCCCCCCCccEEEEcChHhhccC---HHHHHHHHHHHhCCCeEEEEEEcCCc
Confidence 7 689999999999988999999999999999988 78999999999999999999987654
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A | Back alignment and structure |
|---|
Probab=99.73 E-value=6.8e-18 Score=155.78 Aligned_cols=131 Identities=11% Similarity=0.108 Sum_probs=95.1
Q ss_pred HHHHHHHHhhccccccc--cccchHHHHHHHcCCCCCCEEEEEcCccCccccc--CCCcEEEEEeCCHHHHHHHHHc---
Q 016157 89 KYVHRVYDAIAPHFSST--RFAKWPKVATFLNSLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR--- 161 (394)
Q Consensus 89 ~~v~~~Yd~~a~~y~~~--~~~~~~~l~~~l~~l~~g~~VLDvGCG~G~~l~~--~~~~~v~gvD~S~~~l~~a~~~--- 161 (394)
.+..++|+..+..|... ....+..+...+....++.+|||||||+|.++.. ..+..++|+|+|+.+++.|+++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~ 86 (250)
T 2p7i_A 7 NYDQEIKDTAGHKYAYNFDFDVMHPFMVRAFTPFFRPGNLLELGSFKGDFTSRLQEHFNDITCVEASEEAISHAQGRLKD 86 (250)
T ss_dssp ----------------CHHHHTHHHHHHHHHGGGCCSSCEEEESCTTSHHHHHHTTTCSCEEEEESCHHHHHHHHHHSCS
T ss_pred CCCHHHHhhHHHHhcCccchhhHHHHHHHHHHhhcCCCcEEEECCCCCHHHHHHHHhCCcEEEEeCCHHHHHHHHHhhhC
Confidence 34456666666666431 1223445566666556778999999999997542 3345899999999999999987
Q ss_pred CCeEEEeecCCCCCCCCCccEEEehhhhhhcCChhHHHHHHHHHH-hccccCcEEEEEEcCcc
Q 016157 162 GHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELV-RVVKKGSLVLITVWAVE 223 (394)
Q Consensus 162 ~i~~~~~D~~~lp~~~~~fD~Vi~~~vl~hl~~~~~~~~~L~ei~-r~LkpGG~lli~~~~~~ 223 (394)
+++++++|+.++ +.+++||+|++..+++|+++ +..+|+++. ++|||||++++.++...
T Consensus 87 ~v~~~~~d~~~~-~~~~~fD~v~~~~~l~~~~~---~~~~l~~~~~~~LkpgG~l~i~~~~~~ 145 (250)
T 2p7i_A 87 GITYIHSRFEDA-QLPRRYDNIVLTHVLEHIDD---PVALLKRINDDWLAEGGRLFLVCPNAN 145 (250)
T ss_dssp CEEEEESCGGGC-CCSSCEEEEEEESCGGGCSS---HHHHHHHHHHTTEEEEEEEEEEEECTT
T ss_pred CeEEEEccHHHc-CcCCcccEEEEhhHHHhhcC---HHHHHHHHHHHhcCCCCEEEEEcCChH
Confidence 789999999988 46789999999999999998 789999999 99999999999987653
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.72 E-value=2.9e-17 Score=151.30 Aligned_cols=103 Identities=19% Similarity=0.292 Sum_probs=88.0
Q ss_pred CCCCCEEEEEcCccCccccc--CCCcEEEEEeCCHHHHHHHHHc--CCeEEEeecCCCCCCCCCccEEEe-hhhhhhcCC
Q 016157 120 LPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR--GHEVLVADAVNLPYRSDFGDAAIS-IAVLHHLST 194 (394)
Q Consensus 120 l~~g~~VLDvGCG~G~~l~~--~~~~~v~gvD~S~~~l~~a~~~--~i~~~~~D~~~lp~~~~~fD~Vi~-~~vl~hl~~ 194 (394)
++++.+|||||||+|.++.. ..+..++|+|+|+.|++.|+++ ++.++.+|+.++++ +++||+|+| ..+++|+.+
T Consensus 38 ~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~~-~~~~D~v~~~~~~~~~~~~ 116 (239)
T 3bxo_A 38 TPEASSLLDVACGTGTHLEHFTKEFGDTAGLELSEDMLTHARKRLPDATLHQGDMRDFRL-GRKFSAVVSMFSSVGYLKT 116 (239)
T ss_dssp CTTCCEEEEETCTTSHHHHHHHHHHSEEEEEESCHHHHHHHHHHCTTCEEEECCTTTCCC-SSCEEEEEECTTGGGGCCS
T ss_pred cCCCCeEEEecccCCHHHHHHHHhCCcEEEEeCCHHHHHHHHHhCCCCEEEECCHHHccc-CCCCcEEEEcCchHhhcCC
Confidence 46788999999999997542 1223899999999999999987 68999999999887 789999995 559999987
Q ss_pred hhHHHHHHHHHHhccccCcEEEEEEcCcc
Q 016157 195 ESRRKKAIEELVRVVKKGSLVLITVWAVE 223 (394)
Q Consensus 195 ~~~~~~~L~ei~r~LkpGG~lli~~~~~~ 223 (394)
.+.+..+|+++.++|||||++++.++...
T Consensus 117 ~~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 145 (239)
T 3bxo_A 117 TEELGAAVASFAEHLEPGGVVVVEPWWFP 145 (239)
T ss_dssp HHHHHHHHHHHHHTEEEEEEEEECCCCCT
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEEeccCc
Confidence 66688999999999999999999876543
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.72 E-value=8e-18 Score=158.46 Aligned_cols=126 Identities=27% Similarity=0.452 Sum_probs=97.1
Q ss_pred HHHhhccccccccccchHHHHHHHc--CCCCCCEEEEEcCccCccccc--CCCcEEEEEeCCHHHHHHHHHc-CCeEEEe
Q 016157 94 VYDAIAPHFSSTRFAKWPKVATFLN--SLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR-GHEVLVA 168 (394)
Q Consensus 94 ~Yd~~a~~y~~~~~~~~~~l~~~l~--~l~~g~~VLDvGCG~G~~l~~--~~~~~v~gvD~S~~~l~~a~~~-~i~~~~~ 168 (394)
+|+.++..|+..+.........++. .+.++.+|||||||+|.++.. .++..|+|+|+|+.|++.|+++ +++++++
T Consensus 4 ~y~~~a~~y~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~ 83 (261)
T 3ege_A 4 IYNSIGKQYSQTRVPDIRIVNAIINLLNLPKGSVIADIGAGTGGYSVALANQGLFVYAVEPSIVMRQQAVVHPQVEWFTG 83 (261)
T ss_dssp ---------CCSBCCCHHHHHHHHHHHCCCTTCEEEEETCTTSHHHHHHHTTTCEEEEECSCHHHHHSSCCCTTEEEECC
T ss_pred HHHHHHHHHhhcccccHHHHHHHHHHhCCCCCCEEEEEcCcccHHHHHHHhCCCEEEEEeCCHHHHHHHHhccCCEEEEC
Confidence 6888888888765433322222222 346788999999999998642 4778999999999999988877 8899999
Q ss_pred ecCCCCCCCCCccEEEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCcc
Q 016157 169 DAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVE 223 (394)
Q Consensus 169 D~~~lp~~~~~fD~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~~ 223 (394)
|+.++|+++++||+|++..+++|+++ +..+|+++.++|| ||++++.++...
T Consensus 84 d~~~~~~~~~~fD~v~~~~~l~~~~~---~~~~l~~~~~~Lk-gG~~~~~~~~~~ 134 (261)
T 3ege_A 84 YAENLALPDKSVDGVISILAIHHFSH---LEKSFQEMQRIIR-DGTIVLLTFDIR 134 (261)
T ss_dssp CTTSCCSCTTCBSEEEEESCGGGCSS---HHHHHHHHHHHBC-SSCEEEEEECGG
T ss_pred chhhCCCCCCCEeEEEEcchHhhccC---HHHHHHHHHHHhC-CcEEEEEEcCCc
Confidence 99999998999999999999999988 8899999999999 999999988654
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=99.71 E-value=5e-18 Score=154.35 Aligned_cols=101 Identities=19% Similarity=0.293 Sum_probs=85.6
Q ss_pred CCCCCEEEEEcCccCccccc--CCCcEEEEEeCCHHHHHHHHHc-------------------CCeEEEeecCCCCCCC-
Q 016157 120 LPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR-------------------GHEVLVADAVNLPYRS- 177 (394)
Q Consensus 120 l~~g~~VLDvGCG~G~~l~~--~~~~~v~gvD~S~~~l~~a~~~-------------------~i~~~~~D~~~lp~~~- 177 (394)
++++.+|||+|||+|.++.. ..+..|+|+|+|+.|++.|+++ +++++++|+.++++.+
T Consensus 20 ~~~~~~vLD~GCG~G~~~~~la~~g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~~~~ 99 (203)
T 1pjz_A 20 VVPGARVLVPLCGKSQDMSWLSGQGYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARDI 99 (203)
T ss_dssp CCTTCEEEETTTCCSHHHHHHHHHCCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHHHH
T ss_pred cCCCCEEEEeCCCCcHhHHHHHHCCCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccCCcccC
Confidence 46788999999999997542 3467999999999999999875 4789999999999765
Q ss_pred CCccEEEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 016157 178 DFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 221 (394)
Q Consensus 178 ~~fD~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~ 221 (394)
++||+|++..+++|++... +..+++++.|+|||||++++.+..
T Consensus 100 ~~fD~v~~~~~l~~l~~~~-~~~~l~~~~r~LkpgG~~~l~~~~ 142 (203)
T 1pjz_A 100 GHCAAFYDRAAMIALPADM-RERYVQHLEALMPQACSGLLITLE 142 (203)
T ss_dssp HSEEEEEEESCGGGSCHHH-HHHHHHHHHHHSCSEEEEEEEEES
T ss_pred CCEEEEEECcchhhCCHHH-HHHHHHHHHHHcCCCcEEEEEEEe
Confidence 7999999999999997544 678999999999999995555543
|
| >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 | Back alignment and structure |
|---|
Probab=99.70 E-value=1.3e-16 Score=150.57 Aligned_cols=101 Identities=18% Similarity=0.163 Sum_probs=81.0
Q ss_pred CCCCCEEEEEcCccCccccc--CCCc-EEEEEeCCHHHHHHHHHc-----------------------------------
Q 016157 120 LPSGSLVLDAGCGNGKYLGL--NPDC-FFVGCDISPSLIKICVDR----------------------------------- 161 (394)
Q Consensus 120 l~~g~~VLDvGCG~G~~l~~--~~~~-~v~gvD~S~~~l~~a~~~----------------------------------- 161 (394)
..+|.+|||||||+|.+... ..+. .|+|+|+|+.|++.|+++
T Consensus 53 ~~~g~~vLDiGCG~G~~~~~~~~~~~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~~ 132 (263)
T 2a14_A 53 GLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLR 132 (263)
T ss_dssp SCCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred CCCCceEEEeCCCccHHHHHHHHhhhcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHHH
Confidence 45678999999999987542 3454 699999999999988763
Q ss_pred -CC-eEEEeecCCC-CC---CCCCccEEEehhhhhhc-CChhHHHHHHHHHHhccccCcEEEEEEc
Q 016157 162 -GH-EVLVADAVNL-PY---RSDFGDAAISIAVLHHL-STESRRKKAIEELVRVVKKGSLVLITVW 220 (394)
Q Consensus 162 -~i-~~~~~D~~~l-p~---~~~~fD~Vi~~~vl~hl-~~~~~~~~~L~ei~r~LkpGG~lli~~~ 220 (394)
++ .++++|+... |+ ..++||+|+++.++||+ ++.+....+|+++.++|||||+|++..+
T Consensus 133 ~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~~~ 198 (263)
T 2a14_A 133 AAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVT 198 (263)
T ss_dssp HHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred hhhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 12 2889999883 43 25789999999999997 3434478999999999999999999863
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=2.6e-17 Score=155.14 Aligned_cols=133 Identities=15% Similarity=0.152 Sum_probs=101.8
Q ss_pred HHHHHHHHHHHhhccccccccccchHHHHHHHc---CCCCCCEEEEEcCccCccccc--CCCcEEEEEeCCHHHHHHHHH
Q 016157 86 LEKKYVHRVYDAIAPHFSSTRFAKWPKVATFLN---SLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVD 160 (394)
Q Consensus 86 ~~~~~v~~~Yd~~a~~y~~~~~~~~~~l~~~l~---~l~~g~~VLDvGCG~G~~l~~--~~~~~v~gvD~S~~~l~~a~~ 160 (394)
++.+++.+.|..-...|.... .-+.+..++. ...++.+|||+|||+|..+.. ..+..|+|+|+|+.|++.|++
T Consensus 31 ~~~~~Wd~~y~~~~~~~~~~~--~~~~l~~~~~~~~~~~~~~~vLD~GCG~G~~~~~La~~G~~V~gvD~S~~~i~~a~~ 108 (252)
T 2gb4_A 31 LTLEDWKEKWVTRHISFHQEQ--GHQLLKKHLDTFLKGQSGLRVFFPLCGKAIEMKWFADRGHTVVGVEISEIGIREFFA 108 (252)
T ss_dssp CCHHHHHHHHHHTCCTTCCTT--CCHHHHHHHHHHHTTCCSCEEEETTCTTCTHHHHHHHTTCEEEEECSCHHHHHHHHH
T ss_pred CCHHHHHHHHhcCCCCcccCC--CCHHHHHHHHHhccCCCCCeEEEeCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHH
Confidence 346788888887544453322 2223333332 235788999999999997542 347799999999999999975
Q ss_pred c------------------------CCeEEEeecCCCCCCC-CCccEEEehhhhhhcCChhHHHHHHHHHHhccccCcEE
Q 016157 161 R------------------------GHEVLVADAVNLPYRS-DFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLV 215 (394)
Q Consensus 161 ~------------------------~i~~~~~D~~~lp~~~-~~fD~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~l 215 (394)
+ +++++++|+.++++.+ ++||+|++..+++|++... +..+++++.++|||||++
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~l~~~~~~~FD~V~~~~~l~~l~~~~-~~~~l~~~~~~LkpGG~l 187 (252)
T 2gb4_A 109 EQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFDLPRANIGKFDRIWDRGALVAINPGD-HDRYADIILSLLRKEFQY 187 (252)
T ss_dssp HTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTTGGGGCCCCEEEEEESSSTTTSCGGG-HHHHHHHHHHTEEEEEEE
T ss_pred hcccccccccccccccccccccCCCceEEEECccccCCcccCCCEEEEEEhhhhhhCCHHH-HHHHHHHHHHHcCCCeEE
Confidence 3 3689999999998764 8999999999999997644 688999999999999999
Q ss_pred EEEEcC
Q 016157 216 LITVWA 221 (394)
Q Consensus 216 li~~~~ 221 (394)
++.++.
T Consensus 188 ~l~~~~ 193 (252)
T 2gb4_A 188 LVAVLS 193 (252)
T ss_dssp EEEEEE
T ss_pred EEEEEe
Confidence 766543
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.69 E-value=9e-18 Score=155.76 Aligned_cols=128 Identities=22% Similarity=0.358 Sum_probs=100.9
Q ss_pred HHHhhccccccccccchHHHHHHHcCCCCCCEEEEEcCccCccccc--CCCcEEEEEeCCHHHHHHHHHcCCeEEEeecC
Q 016157 94 VYDAIAPHFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDRGHEVLVADAV 171 (394)
Q Consensus 94 ~Yd~~a~~y~~~~~~~~~~l~~~l~~l~~g~~VLDvGCG~G~~l~~--~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~ 171 (394)
+|......|..........+..++..++++.+|||||||+|.++.. ..+..|+|+|+|+.+++.|+++ ++++.+|+.
T Consensus 13 ~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~-~~~~~~d~~ 91 (240)
T 3dli_A 13 YYFLFEEKFRGSRELVKARLRRYIPYFKGCRRVLDIGCGRGEFLELCKEEGIESIGVDINEDMIKFCEGK-FNVVKSDAI 91 (240)
T ss_dssp HHHHHHHHHTCCHHHHHHHHGGGGGGTTTCSCEEEETCTTTHHHHHHHHHTCCEEEECSCHHHHHHHHTT-SEEECSCHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhhhcCCCeEEEEeCCCCHHHHHHHhCCCcEEEEECCHHHHHHHHhh-cceeeccHH
Confidence 3444444444333333334445556677889999999999998642 2366899999999999999988 999999998
Q ss_pred CC--CCCCCCccEEEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCcc
Q 016157 172 NL--PYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVE 223 (394)
Q Consensus 172 ~l--p~~~~~fD~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~~ 223 (394)
++ ++++++||+|++..+++|++++. ...+|+++.++|||||++++.++...
T Consensus 92 ~~~~~~~~~~fD~i~~~~~l~~~~~~~-~~~~l~~~~~~LkpgG~l~~~~~~~~ 144 (240)
T 3dli_A 92 EYLKSLPDKYLDGVMISHFVEHLDPER-LFELLSLCYSKMKYSSYIVIESPNPT 144 (240)
T ss_dssp HHHHTSCTTCBSEEEEESCGGGSCGGG-HHHHHHHHHHHBCTTCCEEEEEECTT
T ss_pred HHhhhcCCCCeeEEEECCchhhCCcHH-HHHHHHHHHHHcCCCcEEEEEeCCcc
Confidence 85 78889999999999999998533 68999999999999999999988643
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.69 E-value=9.6e-17 Score=140.52 Aligned_cols=96 Identities=21% Similarity=0.313 Sum_probs=84.2
Q ss_pred CCCCCEEEEEcCccCccccc--CCCcEEEEEeCCHHHHHHHHHc--CCeEEEeecCCCCCCCCCccEEEehhhhhhcCCh
Q 016157 120 LPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR--GHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTE 195 (394)
Q Consensus 120 l~~g~~VLDvGCG~G~~l~~--~~~~~v~gvD~S~~~l~~a~~~--~i~~~~~D~~~lp~~~~~fD~Vi~~~vl~hl~~~ 195 (394)
+.++.+|||+|||+|.++.. ..+..++|+|+++.+++.|+++ +++++.+| +++.+++||+|++..+++|+++
T Consensus 15 ~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~v~~~~~d---~~~~~~~~D~v~~~~~l~~~~~- 90 (170)
T 3i9f_A 15 EGKKGVIVDYGCGNGFYCKYLLEFATKLYCIDINVIALKEVKEKFDSVITLSDP---KEIPDNSVDFILFANSFHDMDD- 90 (170)
T ss_dssp SSCCEEEEEETCTTCTTHHHHHTTEEEEEEECSCHHHHHHHHHHCTTSEEESSG---GGSCTTCEEEEEEESCSTTCSC-
T ss_pred cCCCCeEEEECCCCCHHHHHHHhhcCeEEEEeCCHHHHHHHHHhCCCcEEEeCC---CCCCCCceEEEEEccchhcccC-
Confidence 46778999999999998542 2224999999999999999987 78999998 6777899999999999999987
Q ss_pred hHHHHHHHHHHhccccCcEEEEEEcC
Q 016157 196 SRRKKAIEELVRVVKKGSLVLITVWA 221 (394)
Q Consensus 196 ~~~~~~L~ei~r~LkpGG~lli~~~~ 221 (394)
+..+++++.++|||||++++..+.
T Consensus 91 --~~~~l~~~~~~L~pgG~l~~~~~~ 114 (170)
T 3i9f_A 91 --KQHVISEVKRILKDDGRVIIIDWR 114 (170)
T ss_dssp --HHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred --HHHHHHHHHHhcCCCCEEEEEEcC
Confidence 789999999999999999998754
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=1.5e-16 Score=152.57 Aligned_cols=101 Identities=13% Similarity=0.160 Sum_probs=84.4
Q ss_pred CCCEEEEEcCccCccccc--CCCcEEEEEeCCHHHHHHHHHc----------CCeEEEeecCCCCCCCCCccEEEeh-hh
Q 016157 122 SGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR----------GHEVLVADAVNLPYRSDFGDAAISI-AV 188 (394)
Q Consensus 122 ~g~~VLDvGCG~G~~l~~--~~~~~v~gvD~S~~~l~~a~~~----------~i~~~~~D~~~lp~~~~~fD~Vi~~-~v 188 (394)
++.+|||||||+|.++.. ..+..|+|+|+|+.|++.|+++ +++++++|+.++++ +++||+|++. .+
T Consensus 82 ~~~~vLDlGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~fD~v~~~~~~ 160 (299)
T 3g2m_A 82 VSGPVLELAAGMGRLTFPFLDLGWEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFAL-DKRFGTVVISSGS 160 (299)
T ss_dssp CCSCEEEETCTTTTTHHHHHTTTCCEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBCCC-SCCEEEEEECHHH
T ss_pred CCCcEEEEeccCCHHHHHHHHcCCeEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcCCc-CCCcCEEEECCcc
Confidence 345999999999998642 3467999999999999999875 37899999999988 7899998865 56
Q ss_pred hhhcCChhHHHHHHHHHHhccccCcEEEEEEcCccc
Q 016157 189 LHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQ 224 (394)
Q Consensus 189 l~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~~~ 224 (394)
++|++. +.+..+|+++.++|||||+|++.++....
T Consensus 161 ~~~~~~-~~~~~~l~~~~~~L~pgG~l~~~~~~~~~ 195 (299)
T 3g2m_A 161 INELDE-ADRRGLYASVREHLEPGGKFLLSLAMSEA 195 (299)
T ss_dssp HTTSCH-HHHHHHHHHHHHHEEEEEEEEEEEECCHH
T ss_pred cccCCH-HHHHHHHHHHHHHcCCCcEEEEEeecCcc
Confidence 666653 44789999999999999999999987654
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A | Back alignment and structure |
|---|
Probab=99.69 E-value=4.8e-17 Score=151.97 Aligned_cols=97 Identities=20% Similarity=0.334 Sum_probs=87.6
Q ss_pred CCCCCCEEEEEcCccCccccc--CCCcEEEEEeCCHHHHHHHHHc------CCeEEEeecCCCCCCCCCccEEEehhhhh
Q 016157 119 SLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR------GHEVLVADAVNLPYRSDFGDAAISIAVLH 190 (394)
Q Consensus 119 ~l~~g~~VLDvGCG~G~~l~~--~~~~~v~gvD~S~~~l~~a~~~------~i~~~~~D~~~lp~~~~~fD~Vi~~~vl~ 190 (394)
.+.++.+|||||||+|.++.. ..+..++|+|+|+.|++.|+++ ++.++.+|+.++++++++||+|++..++|
T Consensus 36 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~ 115 (263)
T 2yqz_A 36 PKGEEPVFLELGVGTGRIALPLIARGYRYIALDADAAMLEVFRQKIAGVDRKVQVVQADARAIPLPDESVHGVIVVHLWH 115 (263)
T ss_dssp CSSSCCEEEEETCTTSTTHHHHHTTTCEEEEEESCHHHHHHHHHHTTTSCTTEEEEESCTTSCCSCTTCEEEEEEESCGG
T ss_pred CCCCCCEEEEeCCcCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhccCCceEEEEcccccCCCCCCCeeEEEECCchh
Confidence 467889999999999997532 3467999999999999999886 68999999999998889999999999999
Q ss_pred hcCChhHHHHHHHHHHhccccCcEEEEE
Q 016157 191 HLSTESRRKKAIEELVRVVKKGSLVLIT 218 (394)
Q Consensus 191 hl~~~~~~~~~L~ei~r~LkpGG~lli~ 218 (394)
|+++ +..+|+++.++|||||.+++.
T Consensus 116 ~~~~---~~~~l~~~~~~L~pgG~l~~~ 140 (263)
T 2yqz_A 116 LVPD---WPKVLAEAIRVLKPGGALLEG 140 (263)
T ss_dssp GCTT---HHHHHHHHHHHEEEEEEEEEE
T ss_pred hcCC---HHHHHHHHHHHCCCCcEEEEE
Confidence 9987 789999999999999999998
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.67 E-value=3.4e-16 Score=143.37 Aligned_cols=104 Identities=27% Similarity=0.417 Sum_probs=90.9
Q ss_pred CCCCCCEEEEEcCccCccccc--CCCcEEEEEeCCHHHHHHHHHc----C--------CeEEEeecCCCCCCCCCccEEE
Q 016157 119 SLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR----G--------HEVLVADAVNLPYRSDFGDAAI 184 (394)
Q Consensus 119 ~l~~g~~VLDvGCG~G~~l~~--~~~~~v~gvD~S~~~l~~a~~~----~--------i~~~~~D~~~lp~~~~~fD~Vi 184 (394)
.++++.+|||+|||+|.++.. ..+..++|+|+|+.+++.|+++ + +.++.+|+..+++.+++||+|+
T Consensus 27 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~ 106 (235)
T 3sm3_A 27 YLQEDDEILDIGCGSGKISLELASKGYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFAV 106 (235)
T ss_dssp HCCTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSCTTCEEEEE
T ss_pred hCCCCCeEEEECCCCCHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCCCCCceeEEE
Confidence 356889999999999997532 2367999999999999999985 2 4889999999998899999999
Q ss_pred ehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCc
Q 016157 185 SIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAV 222 (394)
Q Consensus 185 ~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~ 222 (394)
+..+++|+++.+....+|+++.++|||||++++.++..
T Consensus 107 ~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 144 (235)
T 3sm3_A 107 MQAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEFGQ 144 (235)
T ss_dssp EESCGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEEEBC
T ss_pred EcchhhcCCCHHHHHHHHHHHHHHcCCCeEEEEEECCc
Confidence 99999999986555699999999999999999998765
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=99.67 E-value=4e-16 Score=141.90 Aligned_cols=130 Identities=16% Similarity=0.133 Sum_probs=98.9
Q ss_pred HHHHHHHHHhhcccccccc----c-----cchHHHHHHHcCCCCCCEEEEEcCccCccccc--CCCcEEEEEeCCHHHHH
Q 016157 88 KKYVHRVYDAIAPHFSSTR----F-----AKWPKVATFLNSLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIK 156 (394)
Q Consensus 88 ~~~v~~~Yd~~a~~y~~~~----~-----~~~~~l~~~l~~l~~g~~VLDvGCG~G~~l~~--~~~~~v~gvD~S~~~l~ 156 (394)
.+.+.+.|+..+..|+... . .....+...+.. .++.+|||||||+|.++.. ..+..++|+|+|+.+++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~ 88 (227)
T 3e8s_A 10 EDALLDSWHQNAQAWIDAVRHGAIESRRQVTDQAILLAILG-RQPERVLDLGCGEGWLLRALADRGIEAVGVDGDRTLVD 88 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCHHHHHTHHHHHHHHHHH-TCCSEEEEETCTTCHHHHHHHTTTCEEEEEESCHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHhcccccccccccccHHHHHHhhc-CCCCEEEEeCCCCCHHHHHHHHCCCEEEEEcCCHHHHH
Confidence 3556777887777776421 1 111234444443 3457999999999997542 34779999999999999
Q ss_pred HHHHc-CCeEEEeecCCC---CCCC-CCccEEEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCc
Q 016157 157 ICVDR-GHEVLVADAVNL---PYRS-DFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAV 222 (394)
Q Consensus 157 ~a~~~-~i~~~~~D~~~l---p~~~-~~fD~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~ 222 (394)
.|+++ ++.+..+|+.++ ++.. .+||+|++..+++ ..+ +..+|+++.++|||||++++.++..
T Consensus 89 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~~~l~-~~~---~~~~l~~~~~~L~pgG~l~~~~~~~ 155 (227)
T 3e8s_A 89 AARAAGAGEVHLASYAQLAEAKVPVGKDYDLICANFALL-HQD---IIELLSAMRTLLVPGGALVIQTLHP 155 (227)
T ss_dssp HHHHTCSSCEEECCHHHHHTTCSCCCCCEEEEEEESCCC-SSC---CHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred HHHHhcccccchhhHHhhcccccccCCCccEEEECchhh-hhh---HHHHHHHHHHHhCCCeEEEEEecCc
Confidence 99988 678899988876 5444 4599999999999 555 6899999999999999999998754
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.8e-16 Score=143.16 Aligned_cols=112 Identities=22% Similarity=0.295 Sum_probs=95.3
Q ss_pred HHHHHHHcCCCCCCEEEEEcCccCccc-c--cCCCcEEEEEeCCHHHHHHHHHc------CCeEEEeecCCCCCCCCCcc
Q 016157 111 PKVATFLNSLPSGSLVLDAGCGNGKYL-G--LNPDCFFVGCDISPSLIKICVDR------GHEVLVADAVNLPYRSDFGD 181 (394)
Q Consensus 111 ~~l~~~l~~l~~g~~VLDvGCG~G~~l-~--~~~~~~v~gvD~S~~~l~~a~~~------~i~~~~~D~~~lp~~~~~fD 181 (394)
..+..++..++++.+|||+|||+|.++ . ..++..++|+|+|+.|++.|+++ ++.++++|+.++++++++||
T Consensus 12 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD 91 (209)
T 2p8j_A 12 YRFLKYCNESNLDKTVLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAENFSRENNFKLNISKGDIRKLPFKDESMS 91 (209)
T ss_dssp HHHHHHHHHSSSCSEEEEESCCSSSCTHHHHHHTTCEEEEEECCHHHHHHHHHHHHHHTCCCCEEECCTTSCCSCTTCEE
T ss_pred HHHHHHHhccCCCCEEEEECCCCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEECchhhCCCCCCcee
Confidence 344555666778899999999999873 2 24677999999999999999876 58899999999998889999
Q ss_pred EEEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCcc
Q 016157 182 AAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVE 223 (394)
Q Consensus 182 ~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~~ 223 (394)
+|++..+++|++. ..+..+++++.++|||||++++.++...
T Consensus 92 ~v~~~~~l~~~~~-~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 132 (209)
T 2p8j_A 92 FVYSYGTIFHMRK-NDVKEAIDEIKRVLKPGGLACINFLTTK 132 (209)
T ss_dssp EEEECSCGGGSCH-HHHHHHHHHHHHHEEEEEEEEEEEEETT
T ss_pred EEEEcChHHhCCH-HHHHHHHHHHHHHcCCCcEEEEEEeccc
Confidence 9999999999963 3389999999999999999999987653
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=3.1e-16 Score=147.65 Aligned_cols=102 Identities=23% Similarity=0.349 Sum_probs=89.4
Q ss_pred HHcCCCCCCEEEEEcCccCcccc---cCCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeecCCCCCCCCCccEEE
Q 016157 116 FLNSLPSGSLVLDAGCGNGKYLG---LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAI 184 (394)
Q Consensus 116 ~l~~l~~g~~VLDvGCG~G~~l~---~~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~lp~~~~~fD~Vi 184 (394)
++..++++.+|||||||+|.++. ..+...|+|+|+|+.+++.|+++ +++++++|+.++|+++++||+|+
T Consensus 40 ~l~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~i~ 119 (267)
T 3kkz_A 40 FIDNLTEKSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLPFRNEELDLIW 119 (267)
T ss_dssp TCCCCCTTCEEEEETCTTCHHHHHHHTTCSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTTCEEEEE
T ss_pred hcccCCCCCEEEEeCCCCCHHHHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhCCCCCCCEEEEE
Confidence 33345788999999999999753 24566999999999999999876 38999999999998889999999
Q ss_pred ehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 016157 185 SIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 221 (394)
Q Consensus 185 ~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~ 221 (394)
+..+++|+ + +..+|+++.++|||||++++.++.
T Consensus 120 ~~~~~~~~-~---~~~~l~~~~~~LkpgG~l~~~~~~ 152 (267)
T 3kkz_A 120 SEGAIYNI-G---FERGLNEWRKYLKKGGYLAVSECS 152 (267)
T ss_dssp ESSCGGGT-C---HHHHHHHHGGGEEEEEEEEEEEEE
T ss_pred EcCCceec-C---HHHHHHHHHHHcCCCCEEEEEEee
Confidence 99999999 5 789999999999999999999754
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=99.66 E-value=2.4e-16 Score=150.57 Aligned_cols=102 Identities=22% Similarity=0.164 Sum_probs=90.4
Q ss_pred CCCCCCEEEEEcCccCccccc---CCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeecCCCCCCCCCccEEEehh
Q 016157 119 SLPSGSLVLDAGCGNGKYLGL---NPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISIA 187 (394)
Q Consensus 119 ~l~~g~~VLDvGCG~G~~l~~---~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~lp~~~~~fD~Vi~~~ 187 (394)
.+.++.+|||||||+|.++.. ..+..++|+|+|+.+++.|+++ +++++.+|+.++|+++++||+|++..
T Consensus 79 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~ 158 (297)
T 2o57_A 79 VLQRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCEDNSYDFIWSQD 158 (297)
T ss_dssp CCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSCTTCEEEEEEES
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccCCCCCCCEeEEEecc
Confidence 567889999999999997542 1256999999999999999875 47899999999999899999999999
Q ss_pred hhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCcc
Q 016157 188 VLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVE 223 (394)
Q Consensus 188 vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~~ 223 (394)
+++|+++ +..+|+++.++|||||++++.++...
T Consensus 159 ~l~~~~~---~~~~l~~~~~~LkpgG~l~~~~~~~~ 191 (297)
T 2o57_A 159 AFLHSPD---KLKVFQECARVLKPRGVMAITDPMKE 191 (297)
T ss_dssp CGGGCSC---HHHHHHHHHHHEEEEEEEEEEEEEEC
T ss_pred hhhhcCC---HHHHHHHHHHHcCCCeEEEEEEeccC
Confidence 9999998 78999999999999999999987543
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.66 E-value=2.6e-16 Score=147.42 Aligned_cols=109 Identities=21% Similarity=0.264 Sum_probs=91.2
Q ss_pred hHHHHHHHcCCCCCCEEEEEcCccCccccc--CCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeecCCCCCCCCCc
Q 016157 110 WPKVATFLNSLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFG 180 (394)
Q Consensus 110 ~~~l~~~l~~l~~g~~VLDvGCG~G~~l~~--~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~lp~~~~~f 180 (394)
+..+...+. +.++.+|||||||+|.++.. ..+..++|+|+|+.|++.|+++ ++.++++|+.++|+++++|
T Consensus 26 ~~~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~~f 104 (260)
T 1vl5_A 26 LAKLMQIAA-LKGNEEVLDVATGGGHVANAFAPFVKKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTDERF 104 (260)
T ss_dssp HHHHHHHHT-CCSCCEEEEETCTTCHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCTTCE
T ss_pred HHHHHHHhC-CCCCCEEEEEeCCCCHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecHHhCCCCCCCE
Confidence 344555553 45788999999999997532 2234999999999999999875 4789999999999989999
Q ss_pred cEEEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCc
Q 016157 181 DAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAV 222 (394)
Q Consensus 181 D~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~ 222 (394)
|+|++..++||+++ +..+|+++.++|||||++++..+..
T Consensus 105 D~V~~~~~l~~~~d---~~~~l~~~~r~LkpgG~l~~~~~~~ 143 (260)
T 1vl5_A 105 HIVTCRIAAHHFPN---PASFVSEAYRVLKKGGQLLLVDNSA 143 (260)
T ss_dssp EEEEEESCGGGCSC---HHHHHHHHHHHEEEEEEEEEEEEEB
T ss_pred EEEEEhhhhHhcCC---HHHHHHHHHHHcCCCCEEEEEEcCC
Confidence 99999999999998 7899999999999999999987543
|
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=4.8e-16 Score=145.28 Aligned_cols=100 Identities=18% Similarity=0.189 Sum_probs=82.8
Q ss_pred CCCCEEEEEcCccCccccc--CCCc-EEEEEeCCHHHHHHHHHc----C-------------------------------
Q 016157 121 PSGSLVLDAGCGNGKYLGL--NPDC-FFVGCDISPSLIKICVDR----G------------------------------- 162 (394)
Q Consensus 121 ~~g~~VLDvGCG~G~~l~~--~~~~-~v~gvD~S~~~l~~a~~~----~------------------------------- 162 (394)
.++.+|||||||+|.++.. ..+. .|+|+|+|+.|++.|+++ +
T Consensus 55 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 134 (265)
T 2i62_A 55 VKGELLIDIGSGPTIYQLLSACESFTEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLRR 134 (265)
T ss_dssp CCEEEEEEESCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHHHH
T ss_pred cCCCEEEEECCCccHHHHHHhhcccCeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHhhh
Confidence 4668999999999997543 3344 899999999999999875 2
Q ss_pred -C-eEEEeecCCCCC-CC---CCccEEEehhhhhhcCCh-hHHHHHHHHHHhccccCcEEEEEEc
Q 016157 163 -H-EVLVADAVNLPY-RS---DFGDAAISIAVLHHLSTE-SRRKKAIEELVRVVKKGSLVLITVW 220 (394)
Q Consensus 163 -i-~~~~~D~~~lp~-~~---~~fD~Vi~~~vl~hl~~~-~~~~~~L~ei~r~LkpGG~lli~~~ 220 (394)
+ .++++|+.+++. .+ ++||+|++..+++|+... ..+..+|+++.++|||||+|++..+
T Consensus 135 ~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~ 199 (265)
T 2i62_A 135 AIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVDA 199 (265)
T ss_dssp HEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred hheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEec
Confidence 6 899999988643 55 899999999999966543 2378999999999999999999873
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.9e-16 Score=149.18 Aligned_cols=100 Identities=33% Similarity=0.490 Sum_probs=89.1
Q ss_pred CCCCCEEEEEcCccCccccc---CCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeecCCCCCCCCCccEEEehhh
Q 016157 120 LPSGSLVLDAGCGNGKYLGL---NPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISIAV 188 (394)
Q Consensus 120 l~~g~~VLDvGCG~G~~l~~---~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~lp~~~~~fD~Vi~~~v 188 (394)
+.++.+|||||||+|.++.. ..+..|+|+|+|+.+++.|+++ ++.++.+|+.++|+++++||+|++..+
T Consensus 59 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~ 138 (273)
T 3bus_A 59 VRSGDRVLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLPFEDASFDAVWALES 138 (273)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHSCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCTTCEEEEEEESC
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccCCCCCCCccEEEEech
Confidence 46788999999999997532 2367999999999999999876 478999999999998899999999999
Q ss_pred hhhcCChhHHHHHHHHHHhccccCcEEEEEEcCc
Q 016157 189 LHHLSTESRRKKAIEELVRVVKKGSLVLITVWAV 222 (394)
Q Consensus 189 l~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~ 222 (394)
++|+++ +..+|+++.++|||||++++.++..
T Consensus 139 l~~~~~---~~~~l~~~~~~L~pgG~l~i~~~~~ 169 (273)
T 3bus_A 139 LHHMPD---RGRALREMARVLRPGGTVAIADFVL 169 (273)
T ss_dssp TTTSSC---HHHHHHHHHTTEEEEEEEEEEEEEE
T ss_pred hhhCCC---HHHHHHHHHHHcCCCeEEEEEEeec
Confidence 999988 7899999999999999999998754
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=2.6e-16 Score=143.13 Aligned_cols=104 Identities=18% Similarity=0.207 Sum_probs=89.7
Q ss_pred cCCCCCCEEEEEcCccCccccc--CCCcEEEEEeCCHHHHHHHHHc-----CCeEEEeecCCCCCCCCCccEEEehhhhh
Q 016157 118 NSLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR-----GHEVLVADAVNLPYRSDFGDAAISIAVLH 190 (394)
Q Consensus 118 ~~l~~g~~VLDvGCG~G~~l~~--~~~~~v~gvD~S~~~l~~a~~~-----~i~~~~~D~~~lp~~~~~fD~Vi~~~vl~ 190 (394)
....++.+|||||||+|.++.. ..+..++|+|+|+.+++.|+++ +++++++|+.+++ .+++||+|++..+++
T Consensus 47 ~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~-~~~~fD~v~~~~~l~ 125 (216)
T 3ofk_A 47 LSSGAVSNGLEIGCAAGAFTEKLAPHCKRLTVIDVMPRAIGRACQRTKRWSHISWAATDILQFS-TAELFDLIVVAEVLY 125 (216)
T ss_dssp TTTSSEEEEEEECCTTSHHHHHHGGGEEEEEEEESCHHHHHHHHHHTTTCSSEEEEECCTTTCC-CSCCEEEEEEESCGG
T ss_pred cccCCCCcEEEEcCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHhcccCCCeEEEEcchhhCC-CCCCccEEEEccHHH
Confidence 3455678999999999997542 3346999999999999999987 4799999999988 578999999999999
Q ss_pred hcCChhHHHHHHHHHHhccccCcEEEEEEcCc
Q 016157 191 HLSTESRRKKAIEELVRVVKKGSLVLITVWAV 222 (394)
Q Consensus 191 hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~ 222 (394)
|+++.+....+|+++.++|||||.+++.++..
T Consensus 126 ~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 157 (216)
T 3ofk_A 126 YLEDMTQMRTAIDNMVKMLAPGGHLVFGSARD 157 (216)
T ss_dssp GSSSHHHHHHHHHHHHHTEEEEEEEEEEEECH
T ss_pred hCCCHHHHHHHHHHHHHHcCCCCEEEEEecCC
Confidence 99986556789999999999999999988654
|
| >4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.2e-16 Score=152.02 Aligned_cols=128 Identities=21% Similarity=0.334 Sum_probs=98.8
Q ss_pred HHHHhhccccccccc----------cchHHHHHHHcCCC-CCCEEEEEcCccCccccc--CCCcEEEEEeCCHHHHHHHH
Q 016157 93 RVYDAIAPHFSSTRF----------AKWPKVATFLNSLP-SGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICV 159 (394)
Q Consensus 93 ~~Yd~~a~~y~~~~~----------~~~~~l~~~l~~l~-~g~~VLDvGCG~G~~l~~--~~~~~v~gvD~S~~~l~~a~ 159 (394)
+.|+.++..|+...+ ..|+.+..++..+. ++.+|||||||+|.++.. ..+..++|+|+|+.+++.|+
T Consensus 28 ~~fd~~a~~y~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~ 107 (285)
T 4htf_A 28 RNFDDIAEKFSRNIYGTTKGQLRQAILWQDLDRVLAEMGPQKLRVLDAGGGEGQTAIKMAERGHQVILCDLSAQMIDRAK 107 (285)
T ss_dssp ----CHHHHHHSCTTSCHHHHHHHHHHHHHHHHHHHHTCSSCCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred cchhhHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhcCCCCCEEEEeCCcchHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence 445555555553221 22344555555443 457999999999997542 23779999999999999998
Q ss_pred Hc--------CCeEEEeecCCCC-CCCCCccEEEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCcc
Q 016157 160 DR--------GHEVLVADAVNLP-YRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVE 223 (394)
Q Consensus 160 ~~--------~i~~~~~D~~~lp-~~~~~fD~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~~ 223 (394)
++ +++++++|+.+++ +.+++||+|++..+++|+++ +..+|+++.++|||||++++.++...
T Consensus 108 ~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~~~---~~~~l~~~~~~LkpgG~l~~~~~~~~ 177 (285)
T 4htf_A 108 QAAEAKGVSDNMQFIHCAAQDVASHLETPVDLILFHAVLEWVAD---PRSVLQTLWSVLRPGGVLSLMFYNAH 177 (285)
T ss_dssp HHHHC-CCGGGEEEEESCGGGTGGGCSSCEEEEEEESCGGGCSC---HHHHHHHHHHTEEEEEEEEEEEEBHH
T ss_pred HHHHhcCCCcceEEEEcCHHHhhhhcCCCceEEEECchhhcccC---HHHHHHHHHHHcCCCeEEEEEEeCCc
Confidence 75 4789999999988 77899999999999999988 78999999999999999999987653
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.65 E-value=6e-16 Score=139.76 Aligned_cols=137 Identities=18% Similarity=0.191 Sum_probs=106.2
Q ss_pred HHHHHHHHHHhhccccccccccchHHHHHHHc-CCCCCCEEEEEcCccCccccc--CCCc-EEEEEeCCHHHHHHHHHc-
Q 016157 87 EKKYVHRVYDAIAPHFSSTRFAKWPKVATFLN-SLPSGSLVLDAGCGNGKYLGL--NPDC-FFVGCDISPSLIKICVDR- 161 (394)
Q Consensus 87 ~~~~v~~~Yd~~a~~y~~~~~~~~~~l~~~l~-~l~~g~~VLDvGCG~G~~l~~--~~~~-~v~gvD~S~~~l~~a~~~- 161 (394)
+.+++.+.|...........+..+..+..++. .+.++.+|||+|||+|.++.. ..+. .++|+|+|+.+++.|+++
T Consensus 6 ~~~~W~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~ 85 (215)
T 2pxx_A 6 EVEYWDQRYQGAADSAPYDWFGDFSSFRALLEPELRPEDRILVLGCGNSALSYELFLGGFPNVTSVDYSSVVVAAMQACY 85 (215)
T ss_dssp CHHHHHHHTTTTTTSCCCCTTCCHHHHHHHHGGGCCTTCCEEEETCTTCSHHHHHHHTTCCCEEEEESCHHHHHHHHHHT
T ss_pred chhHHHHHhccCCCCCCcccccCHHHHHHHHHHhcCCCCeEEEECCCCcHHHHHHHHcCCCcEEEEeCCHHHHHHHHHhc
Confidence 35677777766543222223444556666664 467888999999999997532 1222 899999999999999986
Q ss_pred ----CCeEEEeecCCCCCCCCCccEEEehhhhhhcCC------------hhHHHHHHHHHHhccccCcEEEEEEcCcc
Q 016157 162 ----GHEVLVADAVNLPYRSDFGDAAISIAVLHHLST------------ESRRKKAIEELVRVVKKGSLVLITVWAVE 223 (394)
Q Consensus 162 ----~i~~~~~D~~~lp~~~~~fD~Vi~~~vl~hl~~------------~~~~~~~L~ei~r~LkpGG~lli~~~~~~ 223 (394)
++.++++|+.++++++++||+|++..+++|+.. ...+..+|+++.++|||||++++.++...
T Consensus 86 ~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~ 163 (215)
T 2pxx_A 86 AHVPQLRWETMDVRKLDFPSASFDVVLEKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSAAP 163 (215)
T ss_dssp TTCTTCEEEECCTTSCCSCSSCEEEEEEESHHHHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCH
T ss_pred ccCCCcEEEEcchhcCCCCCCcccEEEECcchhhhccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeCCCc
Confidence 589999999999988899999999999988861 22368999999999999999999998754
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=99.64 E-value=6.1e-16 Score=142.71 Aligned_cols=110 Identities=22% Similarity=0.334 Sum_probs=92.8
Q ss_pred cchHHHHHHHcCCCCCCEEEEEcCccCccccc--CCCc-EEEEEeCCHHHHHHHHHc----CCeEEEeecCCCCCCCCCc
Q 016157 108 AKWPKVATFLNSLPSGSLVLDAGCGNGKYLGL--NPDC-FFVGCDISPSLIKICVDR----GHEVLVADAVNLPYRSDFG 180 (394)
Q Consensus 108 ~~~~~l~~~l~~l~~g~~VLDvGCG~G~~l~~--~~~~-~v~gvD~S~~~l~~a~~~----~i~~~~~D~~~lp~~~~~f 180 (394)
..|..+..++. ..++.+|||||||+|.++.. ..+. .++|+|+|+.+++.|+++ +++++.+|+..+++++++|
T Consensus 30 ~~~~~l~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~f 108 (243)
T 3bkw_A 30 AEWPALRAMLP-EVGGLRIVDLGCGFGWFCRWAHEHGASYVLGLDLSEKMLARARAAGPDTGITYERADLDKLHLPQDSF 108 (243)
T ss_dssp TTHHHHHHHSC-CCTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHTSCSSSEEEEECCGGGCCCCTTCE
T ss_pred HhHHHHHHhcc-ccCCCEEEEEcCcCCHHHHHHHHCCCCeEEEEcCCHHHHHHHHHhcccCCceEEEcChhhccCCCCCc
Confidence 33445555554 34678999999999997532 2245 999999999999999987 4789999999998888999
Q ss_pred cEEEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 016157 181 DAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 221 (394)
Q Consensus 181 D~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~ 221 (394)
|+|++..+++|+++ +..+|+++.++|||||++++.++.
T Consensus 109 D~v~~~~~l~~~~~---~~~~l~~~~~~L~pgG~l~~~~~~ 146 (243)
T 3bkw_A 109 DLAYSSLALHYVED---VARLFRTVHQALSPGGHFVFSTEH 146 (243)
T ss_dssp EEEEEESCGGGCSC---HHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred eEEEEeccccccch---HHHHHHHHHHhcCcCcEEEEEeCC
Confidence 99999999999987 789999999999999999998864
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.64 E-value=4.3e-16 Score=145.24 Aligned_cols=97 Identities=16% Similarity=0.174 Sum_probs=86.9
Q ss_pred CCCEEEEEcCccCccccc--CCCc-EEEEEeCCHHHHHHHHHc----CCeEEEeecCCCCCCCCCccEEEehhhhhhcCC
Q 016157 122 SGSLVLDAGCGNGKYLGL--NPDC-FFVGCDISPSLIKICVDR----GHEVLVADAVNLPYRSDFGDAAISIAVLHHLST 194 (394)
Q Consensus 122 ~g~~VLDvGCG~G~~l~~--~~~~-~v~gvD~S~~~l~~a~~~----~i~~~~~D~~~lp~~~~~fD~Vi~~~vl~hl~~ 194 (394)
++.+|||||||+|.++.. ..+. .++|+|+|+.+++.|+++ +++++.+|+.++++++++||+|++..+++|+.+
T Consensus 44 ~~~~vLD~GcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~ 123 (253)
T 3g5l_A 44 NQKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLSERMLTEAKRKTTSPVVCYEQKAIEDIAIEPDAYNVVLSSLALHYIAS 123 (253)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHCCCTTEEEEECCGGGCCCCTTCEEEEEEESCGGGCSC
T ss_pred CCCEEEEECCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHhhccCCeEEEEcchhhCCCCCCCeEEEEEchhhhhhhh
Confidence 678999999999987532 2233 999999999999999987 589999999999988899999999999999987
Q ss_pred hhHHHHHHHHHHhccccCcEEEEEEcC
Q 016157 195 ESRRKKAIEELVRVVKKGSLVLITVWA 221 (394)
Q Consensus 195 ~~~~~~~L~ei~r~LkpGG~lli~~~~ 221 (394)
+..+|+++.++|||||++++.++.
T Consensus 124 ---~~~~l~~~~~~LkpgG~l~~~~~~ 147 (253)
T 3g5l_A 124 ---FDDICKKVYINLKSSGSFIFSVEH 147 (253)
T ss_dssp ---HHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred ---HHHHHHHHHHHcCCCcEEEEEeCC
Confidence 889999999999999999998765
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A | Back alignment and structure |
|---|
Probab=99.64 E-value=4.2e-16 Score=155.21 Aligned_cols=101 Identities=22% Similarity=0.280 Sum_probs=89.3
Q ss_pred CCCCCEEEEEcCccCcccc----c-CCCcEEEEEeCCHHHHHHHHHc---------------CCeEEEeecCCC------
Q 016157 120 LPSGSLVLDAGCGNGKYLG----L-NPDCFFVGCDISPSLIKICVDR---------------GHEVLVADAVNL------ 173 (394)
Q Consensus 120 l~~g~~VLDvGCG~G~~l~----~-~~~~~v~gvD~S~~~l~~a~~~---------------~i~~~~~D~~~l------ 173 (394)
+.++.+|||||||+|.++. . .++..|+|+|+|+.+++.|+++ +++++++|+.++
T Consensus 81 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~ 160 (383)
T 4fsd_A 81 SLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPE 160 (383)
T ss_dssp GGTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSC
T ss_pred CCCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccC
Confidence 4578899999999998643 2 3778999999999999999874 678999999987
Q ss_pred CCCCCCccEEEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCcc
Q 016157 174 PYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVE 223 (394)
Q Consensus 174 p~~~~~fD~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~~ 223 (394)
++++++||+|++..+++|+++ +..+|+++.++|||||+|++..+...
T Consensus 161 ~~~~~~fD~V~~~~~l~~~~d---~~~~l~~~~r~LkpgG~l~i~~~~~~ 207 (383)
T 4fsd_A 161 GVPDSSVDIVISNCVCNLSTN---KLALFKEIHRVLRDGGELYFSDVYAD 207 (383)
T ss_dssp CCCTTCEEEEEEESCGGGCSC---HHHHHHHHHHHEEEEEEEEEEEEEES
T ss_pred CCCCCCEEEEEEccchhcCCC---HHHHHHHHHHHcCCCCEEEEEEeccc
Confidence 888899999999999999988 78999999999999999999876543
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.64 E-value=7.4e-16 Score=142.19 Aligned_cols=134 Identities=15% Similarity=0.249 Sum_probs=103.0
Q ss_pred HHHHHHHHHHHhhccccccccccchHHHHHHHcCC-CCCCEEEEEcCccCcccc--cCCCcEEEEEeCCHHHHHHHHHc-
Q 016157 86 LEKKYVHRVYDAIAPHFSSTRFAKWPKVATFLNSL-PSGSLVLDAGCGNGKYLG--LNPDCFFVGCDISPSLIKICVDR- 161 (394)
Q Consensus 86 ~~~~~v~~~Yd~~a~~y~~~~~~~~~~l~~~l~~l-~~g~~VLDvGCG~G~~l~--~~~~~~v~gvD~S~~~l~~a~~~- 161 (394)
.+.+++.+.|......|... ...+.+..++... .++.+|||||||+|.++. ..++..|+|+|+|+.+++.|+++
T Consensus 31 ~~~~~w~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~ 108 (235)
T 3lcc_A 31 VEEGGWEKCWEEEITPWDQG--RATPLIVHLVDTSSLPLGRALVPGCGGGHDVVAMASPERFVVGLDISESALAKANETY 108 (235)
T ss_dssp HHHHHHHHHHHTTCCTTCCS--SCCHHHHHHHHTTCSCCEEEEEETCTTCHHHHHHCBTTEEEEEECSCHHHHHHHHHHH
T ss_pred cCHHHHHHHHhcCCCCcccC--CCCHHHHHHHHhcCCCCCCEEEeCCCCCHHHHHHHhCCCeEEEEECCHHHHHHHHHHh
Confidence 34456777777654444422 2234455555432 234599999999999754 24677999999999999999887
Q ss_pred -------CCeEEEeecCCCCCCCCCccEEEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCcc
Q 016157 162 -------GHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVE 223 (394)
Q Consensus 162 -------~i~~~~~D~~~lp~~~~~fD~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~~ 223 (394)
+++++++|+.+++. +++||+|++..+++|++... +..+|+++.++|||||++++..+...
T Consensus 109 ~~~~~~~~v~~~~~d~~~~~~-~~~fD~v~~~~~l~~~~~~~-~~~~l~~~~~~LkpgG~l~~~~~~~~ 175 (235)
T 3lcc_A 109 GSSPKAEYFSFVKEDVFTWRP-TELFDLIFDYVFFCAIEPEM-RPAWAKSMYELLKPDGELITLMYPIT 175 (235)
T ss_dssp TTSGGGGGEEEECCCTTTCCC-SSCEEEEEEESSTTTSCGGG-HHHHHHHHHHHEEEEEEEEEEECCCS
T ss_pred hccCCCcceEEEECchhcCCC-CCCeeEEEEChhhhcCCHHH-HHHHHHHHHHHCCCCcEEEEEEeccc
Confidence 27899999999874 56999999999999998433 78999999999999999999988654
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=5.5e-16 Score=147.36 Aligned_cols=135 Identities=22% Similarity=0.177 Sum_probs=89.9
Q ss_pred HHHHHHHHHhhcccccccccc----------chHHHHHHHcCCCCCCEEEEEcCccCccccc---CCCcEEEEEeCCHHH
Q 016157 88 KKYVHRVYDAIAPHFSSTRFA----------KWPKVATFLNSLPSGSLVLDAGCGNGKYLGL---NPDCFFVGCDISPSL 154 (394)
Q Consensus 88 ~~~v~~~Yd~~a~~y~~~~~~----------~~~~l~~~l~~l~~g~~VLDvGCG~G~~l~~---~~~~~v~gvD~S~~~ 154 (394)
.+.+.++|+..+..|...+.. .|..-......++++.+|||||||+|.++.. .+...++|+|+|+.+
T Consensus 20 ~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~ 99 (298)
T 1ri5_A 20 KEEIREHYNSIRERGRESRQRSKTINIRNANNFIKACLIRLYTKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVS 99 (298)
T ss_dssp ---------------------CCSHHHHHHHHHHHHHHHHHHCCTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHH
T ss_pred HHHHHHHHHHhhcccccccccchhhhHHHHHHHHHHHHHHHhCCCCCeEEEECCCCCHHHHHHHHCCCCEEEEEECCHHH
Confidence 346777788877766554322 1211111112357889999999999987532 234599999999999
Q ss_pred HHHHHHc--------CCeEEEeecCCCCC-CCCCccEEEehhhhhhc-CChhHHHHHHHHHHhccccCcEEEEEEcCc
Q 016157 155 IKICVDR--------GHEVLVADAVNLPY-RSDFGDAAISIAVLHHL-STESRRKKAIEELVRVVKKGSLVLITVWAV 222 (394)
Q Consensus 155 l~~a~~~--------~i~~~~~D~~~lp~-~~~~fD~Vi~~~vl~hl-~~~~~~~~~L~ei~r~LkpGG~lli~~~~~ 222 (394)
++.|+++ ++.++++|+.++++ .+++||+|++..++||+ .+...+..+|+++.++|||||++++.++..
T Consensus 100 ~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 177 (298)
T 1ri5_A 100 INDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSR 177 (298)
T ss_dssp HHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEECH
T ss_pred HHHHHHHHHhcCCCccEEEEECCccccccCCCCCcCEEEECchhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEECCH
Confidence 9999886 26899999999887 57899999999999984 344447899999999999999999998764
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.63 E-value=7e-16 Score=143.83 Aligned_cols=105 Identities=17% Similarity=0.216 Sum_probs=91.2
Q ss_pred HHHHcC--CCCCCEEEEEcCccCcccc----cCCCcEEEEEeCCHHHHHHHHHc--CCeEEEeecCCCCCCCCCccEEEe
Q 016157 114 ATFLNS--LPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR--GHEVLVADAVNLPYRSDFGDAAIS 185 (394)
Q Consensus 114 ~~~l~~--l~~g~~VLDvGCG~G~~l~----~~~~~~v~gvD~S~~~l~~a~~~--~i~~~~~D~~~lp~~~~~fD~Vi~ 185 (394)
..++.. +.++.+|||||||+|.++. ..++..++|+|+|+.|++.|+++ ++.++.+|+.+++ .+++||+|++
T Consensus 23 ~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~-~~~~fD~v~~ 101 (259)
T 2p35_A 23 RDLLAQVPLERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRLPNTNFGKADLATWK-PAQKADLLYA 101 (259)
T ss_dssp HHHHTTCCCSCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHHSTTSEEEECCTTTCC-CSSCEEEEEE
T ss_pred HHHHHhcCCCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCCCcEEEECChhhcC-ccCCcCEEEE
Confidence 344443 3567899999999999753 24578999999999999999987 7899999999988 7889999999
Q ss_pred hhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCc
Q 016157 186 IAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAV 222 (394)
Q Consensus 186 ~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~ 222 (394)
..+++|+++ +..+|+++.++|||||++++.++..
T Consensus 102 ~~~l~~~~~---~~~~l~~~~~~L~pgG~l~~~~~~~ 135 (259)
T 2p35_A 102 NAVFQWVPD---HLAVLSQLMDQLESGGVLAVQMPDN 135 (259)
T ss_dssp ESCGGGSTT---HHHHHHHHGGGEEEEEEEEEEEECC
T ss_pred eCchhhCCC---HHHHHHHHHHhcCCCeEEEEEeCCC
Confidence 999999987 7899999999999999999998754
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.63 E-value=8.9e-16 Score=144.20 Aligned_cols=100 Identities=27% Similarity=0.378 Sum_probs=86.2
Q ss_pred CCCCCEEEEEcCccCccccc--CCCcEEEEEeCCHHHHHHHHHcC-CeEEEeecCCCCCCCCCccEEEehhhhhhc-CCh
Q 016157 120 LPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDRG-HEVLVADAVNLPYRSDFGDAAISIAVLHHL-STE 195 (394)
Q Consensus 120 l~~g~~VLDvGCG~G~~l~~--~~~~~v~gvD~S~~~l~~a~~~~-i~~~~~D~~~lp~~~~~fD~Vi~~~vl~hl-~~~ 195 (394)
++++.+|||||||+|.++.. ..+..++|+|+|+.|++.|+++. ..++++|+.++++++++||+|++..+++|+ .+
T Consensus 52 ~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~~~- 130 (260)
T 2avn_A 52 LKNPCRVLDLGGGTGKWSLFLQERGFEVVLVDPSKEMLEVAREKGVKNVVEAKAEDLPFPSGAFEAVLALGDVLSYVEN- 130 (260)
T ss_dssp CCSCCEEEEETCTTCHHHHHHHTTTCEEEEEESCHHHHHHHHHHTCSCEEECCTTSCCSCTTCEEEEEECSSHHHHCSC-
T ss_pred cCCCCeEEEeCCCcCHHHHHHHHcCCeEEEEeCCHHHHHHHHhhcCCCEEECcHHHCCCCCCCEEEEEEcchhhhcccc-
Confidence 45788999999999997542 34679999999999999999873 248999999999888999999999877776 55
Q ss_pred hHHHHHHHHHHhccccCcEEEEEEcCc
Q 016157 196 SRRKKAIEELVRVVKKGSLVLITVWAV 222 (394)
Q Consensus 196 ~~~~~~L~ei~r~LkpGG~lli~~~~~ 222 (394)
+..+|+++.++|||||++++.+++.
T Consensus 131 --~~~~l~~~~~~LkpgG~l~~~~~~~ 155 (260)
T 2avn_A 131 --KDKAFSEIRRVLVPDGLLIATVDNF 155 (260)
T ss_dssp --HHHHHHHHHHHEEEEEEEEEEEEBH
T ss_pred --HHHHHHHHHHHcCCCeEEEEEeCCh
Confidence 7899999999999999999998764
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=99.63 E-value=9.4e-16 Score=142.88 Aligned_cols=98 Identities=22% Similarity=0.239 Sum_probs=86.4
Q ss_pred CCCCCCEEEEEcCccCccccc---CCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeecCCCCCCCCCccEEEehh
Q 016157 119 SLPSGSLVLDAGCGNGKYLGL---NPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISIA 187 (394)
Q Consensus 119 ~l~~g~~VLDvGCG~G~~l~~---~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~lp~~~~~fD~Vi~~~ 187 (394)
.+.++.+|||||||+|.++.. ..+..++|+|+|+.|++.|+++ +++++++|+.++++ +++||+|++..
T Consensus 33 ~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~-~~~fD~V~~~~ 111 (256)
T 1nkv_A 33 RMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVA-NEKCDVAACVG 111 (256)
T ss_dssp CCCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCC-SSCEEEEEEES
T ss_pred CCCCCCEEEEECCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHhCCc-CCCCCEEEECC
Confidence 467889999999999997532 2267999999999999999875 47899999999988 88999999999
Q ss_pred hhhhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 016157 188 VLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (394)
Q Consensus 188 vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~ 220 (394)
+++|+++ +..+|+++.++|||||++++...
T Consensus 112 ~~~~~~~---~~~~l~~~~r~LkpgG~l~~~~~ 141 (256)
T 1nkv_A 112 ATWIAGG---FAGAEELLAQSLKPGGIMLIGEP 141 (256)
T ss_dssp CGGGTSS---SHHHHHHHTTSEEEEEEEEEEEE
T ss_pred ChHhcCC---HHHHHHHHHHHcCCCeEEEEecC
Confidence 9999987 78999999999999999999864
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=8.7e-16 Score=143.18 Aligned_cols=104 Identities=21% Similarity=0.378 Sum_probs=89.3
Q ss_pred HHHHHcCCCCCCEEEEEcCccCccccc----CCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeecCCCCCCCCCc
Q 016157 113 VATFLNSLPSGSLVLDAGCGNGKYLGL----NPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFG 180 (394)
Q Consensus 113 l~~~l~~l~~g~~VLDvGCG~G~~l~~----~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~lp~~~~~f 180 (394)
+..++..++++.+|||||||+|.++.. .+ ..|+|+|+|+.+++.|+++ +++++++|+.++|+++++|
T Consensus 37 ~l~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~f 115 (257)
T 3f4k_A 37 AVSFINELTDDAKIADIGCGTGGQTLFLADYVK-GQITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLPFQNEEL 115 (257)
T ss_dssp HHTTSCCCCTTCEEEEETCTTSHHHHHHHHHCC-SEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCSSCTTCE
T ss_pred HHHHHhcCCCCCeEEEeCCCCCHHHHHHHHhCC-CeEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCCCCCCCE
Confidence 334444567889999999999997532 33 3999999999999999876 2889999999999988999
Q ss_pred cEEEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 016157 181 DAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 221 (394)
Q Consensus 181 D~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~ 221 (394)
|+|++..+++|+ + +..+|+++.++|||||++++.++.
T Consensus 116 D~v~~~~~l~~~-~---~~~~l~~~~~~L~pgG~l~~~~~~ 152 (257)
T 3f4k_A 116 DLIWSEGAIYNI-G---FERGMNEWSKYLKKGGFIAVSEAS 152 (257)
T ss_dssp EEEEEESCSCCC-C---HHHHHHHHHTTEEEEEEEEEEEEE
T ss_pred EEEEecChHhhc-C---HHHHHHHHHHHcCCCcEEEEEEee
Confidence 999999999999 5 789999999999999999999743
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A | Back alignment and structure |
|---|
Probab=99.62 E-value=1.7e-15 Score=138.10 Aligned_cols=98 Identities=24% Similarity=0.293 Sum_probs=84.3
Q ss_pred CCCCEEEEEcCccCcccc----cCCCcEEEEEeCCHHHHHHHHHc------------CCeEEEeecCCCCCCCCCccEEE
Q 016157 121 PSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR------------GHEVLVADAVNLPYRSDFGDAAI 184 (394)
Q Consensus 121 ~~g~~VLDvGCG~G~~l~----~~~~~~v~gvD~S~~~l~~a~~~------------~i~~~~~D~~~lp~~~~~fD~Vi 184 (394)
.++.+|||||||+|.++. ..+...++|+|+|+.+++.|+++ +++++++|+..+++.+++||+|+
T Consensus 28 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~ 107 (219)
T 3jwg_A 28 VNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVYRDKRFSGYDAAT 107 (219)
T ss_dssp TTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSSCCGGGTTCSEEE
T ss_pred cCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCcccccccccCCCCEEE
Confidence 456799999999999753 24457999999999999999986 68999999988888889999999
Q ss_pred ehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 016157 185 SIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 185 ~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~ 219 (394)
+..+++|++++. ...+|+++.++|||||.+++..
T Consensus 108 ~~~~l~~~~~~~-~~~~l~~~~~~LkpgG~~i~~~ 141 (219)
T 3jwg_A 108 VIEVIEHLDENR-LQAFEKVLFEFTRPQTVIVSTP 141 (219)
T ss_dssp EESCGGGCCHHH-HHHHHHHHHTTTCCSEEEEEEE
T ss_pred EHHHHHhCCHHH-HHHHHHHHHHhhCCCEEEEEcc
Confidence 999999997643 5799999999999999665554
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.62 E-value=4.3e-16 Score=149.31 Aligned_cols=97 Identities=19% Similarity=0.244 Sum_probs=86.6
Q ss_pred CCCCEEEEEcCccCcccc----c-CCCcEEEEEeCCHHHHHHHHHc---------CCeEEEeecCCCCCCC------CCc
Q 016157 121 PSGSLVLDAGCGNGKYLG----L-NPDCFFVGCDISPSLIKICVDR---------GHEVLVADAVNLPYRS------DFG 180 (394)
Q Consensus 121 ~~g~~VLDvGCG~G~~l~----~-~~~~~v~gvD~S~~~l~~a~~~---------~i~~~~~D~~~lp~~~------~~f 180 (394)
.++.+|||||||+|.++. . .++..|+|+|+|+.+++.|+++ +++++++|+.++++.+ ++|
T Consensus 35 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~f 114 (299)
T 3g5t_A 35 GERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFKFLGADSVDKQKI 114 (299)
T ss_dssp SCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCGGGCTTTTTSSCE
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCCccccccccCCCe
Confidence 578899999999999753 1 4778999999999999999875 6899999999998877 899
Q ss_pred cEEEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 016157 181 DAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 221 (394)
Q Consensus 181 D~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~ 221 (394)
|+|++..++||+ + +..+++++.++|||||.|++..+.
T Consensus 115 D~V~~~~~l~~~-~---~~~~l~~~~~~LkpgG~l~i~~~~ 151 (299)
T 3g5t_A 115 DMITAVECAHWF-D---FEKFQRSAYANLRKDGTIAIWGYA 151 (299)
T ss_dssp EEEEEESCGGGS-C---HHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred eEEeHhhHHHHh-C---HHHHHHHHHHhcCCCcEEEEEecC
Confidence 999999999999 6 889999999999999999996654
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.62 E-value=8.6e-16 Score=142.41 Aligned_cols=99 Identities=14% Similarity=0.090 Sum_probs=85.7
Q ss_pred CCCEEEEEcCccCccccc---CCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeecCCCCCCCCCccEEEehhhhhh
Q 016157 122 SGSLVLDAGCGNGKYLGL---NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFGDAAISIAVLHH 191 (394)
Q Consensus 122 ~g~~VLDvGCG~G~~l~~---~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~lp~~~~~fD~Vi~~~vl~h 191 (394)
++.+|||||||+|.++.. .....++|+|+|+.+++.|+++ ++.++.+|+.++++.+++||+|++..+++|
T Consensus 79 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 158 (241)
T 2ex4_A 79 GTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVIGH 158 (241)
T ss_dssp CCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESCGGG
T ss_pred CCCEEEEECCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhhcCCCCCCEEEEEEcchhhh
Confidence 578999999999997542 2245999999999999999886 267999999999888889999999999999
Q ss_pred cCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 016157 192 LSTESRRKKAIEELVRVVKKGSLVLITVWA 221 (394)
Q Consensus 192 l~~~~~~~~~L~ei~r~LkpGG~lli~~~~ 221 (394)
++++. ...+|+++.++|||||++++.++.
T Consensus 159 ~~~~~-~~~~l~~~~~~LkpgG~l~i~~~~ 187 (241)
T 2ex4_A 159 LTDQH-LAEFLRRCKGSLRPNGIIVIKDNM 187 (241)
T ss_dssp SCHHH-HHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred CCHHH-HHHHHHHHHHhcCCCeEEEEEEcc
Confidence 98744 568999999999999999998754
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=1.3e-15 Score=141.37 Aligned_cols=102 Identities=23% Similarity=0.260 Sum_probs=89.4
Q ss_pred CCCCCCEEEEEcCccCccccc--CCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeecCCCCCCCCCccEEEehhhh
Q 016157 119 SLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFGDAAISIAVL 189 (394)
Q Consensus 119 ~l~~g~~VLDvGCG~G~~l~~--~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~lp~~~~~fD~Vi~~~vl 189 (394)
.+.++.+|||||||+|.++.. ..+..++|+|+|+.+++.|+++ ++.++++|+.++|+.+++||+|++..++
T Consensus 18 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l 97 (239)
T 1xxl_A 18 ECRAEHRVLDIGAGAGHTALAFSPYVQECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDDSFDIITCRYAA 97 (239)
T ss_dssp TCCTTCEEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTTCEEEEEEESCG
T ss_pred CcCCCCEEEEEccCcCHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEecccccCCCCCCcEEEEEECCch
Confidence 467889999999999997532 2345999999999999998875 4789999999999988999999999999
Q ss_pred hhcCChhHHHHHHHHHHhccccCcEEEEEEcCcc
Q 016157 190 HHLSTESRRKKAIEELVRVVKKGSLVLITVWAVE 223 (394)
Q Consensus 190 ~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~~ 223 (394)
+|+++ +..+|+++.++|||||++++..+...
T Consensus 98 ~~~~~---~~~~l~~~~~~LkpgG~l~~~~~~~~ 128 (239)
T 1xxl_A 98 HHFSD---VRKAVREVARVLKQDGRFLLVDHYAP 128 (239)
T ss_dssp GGCSC---HHHHHHHHHHHEEEEEEEEEEEECBC
T ss_pred hhccC---HHHHHHHHHHHcCCCcEEEEEEcCCC
Confidence 99988 78999999999999999999876543
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A | Back alignment and structure |
|---|
Probab=99.62 E-value=1.6e-15 Score=138.23 Aligned_cols=99 Identities=22% Similarity=0.247 Sum_probs=84.9
Q ss_pred CCCCEEEEEcCccCccccc----CCCcEEEEEeCCHHHHHHHHHc------------CCeEEEeecCCCCCCCCCccEEE
Q 016157 121 PSGSLVLDAGCGNGKYLGL----NPDCFFVGCDISPSLIKICVDR------------GHEVLVADAVNLPYRSDFGDAAI 184 (394)
Q Consensus 121 ~~g~~VLDvGCG~G~~l~~----~~~~~v~gvD~S~~~l~~a~~~------------~i~~~~~D~~~lp~~~~~fD~Vi 184 (394)
.++.+|||||||+|.++.. .+...++|+|+|+.+++.|+++ +++++++|+..++...++||+|+
T Consensus 28 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~ 107 (217)
T 3jwh_A 28 SNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQDKRFHGYDAAT 107 (217)
T ss_dssp TTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSCCGGGCSCSEEE
T ss_pred cCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCcccccccCCCcCEEe
Confidence 4567999999999997542 4557999999999999999987 68999999988887778999999
Q ss_pred ehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 016157 185 SIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (394)
Q Consensus 185 ~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~ 220 (394)
+..+++|++++. ...+|+++.++|||||.+++...
T Consensus 108 ~~~~l~~~~~~~-~~~~l~~~~~~LkpgG~li~~~~ 142 (217)
T 3jwh_A 108 VIEVIEHLDLSR-LGAFERVLFEFAQPKIVIVTTPN 142 (217)
T ss_dssp EESCGGGCCHHH-HHHHHHHHHTTTCCSEEEEEEEB
T ss_pred eHHHHHcCCHHH-HHHHHHHHHHHcCCCEEEEEccC
Confidence 999999997633 58999999999999997766543
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=8.8e-16 Score=146.23 Aligned_cols=103 Identities=22% Similarity=0.293 Sum_probs=88.7
Q ss_pred CCCCCEEEEEcCccCccccc--CCCcEEEEEeCCHHHHHHHHHc-----------CCeEEEeecCCCC---CCCCCccEE
Q 016157 120 LPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR-----------GHEVLVADAVNLP---YRSDFGDAA 183 (394)
Q Consensus 120 l~~g~~VLDvGCG~G~~l~~--~~~~~v~gvD~S~~~l~~a~~~-----------~i~~~~~D~~~lp---~~~~~fD~V 183 (394)
..++.+|||||||+|.++.. ..+..|+|+|+|+.|++.|+++ ++.+..+|+..++ +.+++||+|
T Consensus 55 ~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~V 134 (293)
T 3thr_A 55 QHGCHRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAV 134 (293)
T ss_dssp HTTCCEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCCTTCEEEE
T ss_pred ccCCCEEEEecCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCccccccCCCeEEE
Confidence 34678999999999997542 3356999999999999999763 5788999999988 788999999
Q ss_pred Eeh-hhhhhcCC----hhHHHHHHHHHHhccccCcEEEEEEcCc
Q 016157 184 ISI-AVLHHLST----ESRRKKAIEELVRVVKKGSLVLITVWAV 222 (394)
Q Consensus 184 i~~-~vl~hl~~----~~~~~~~L~ei~r~LkpGG~lli~~~~~ 222 (394)
++. .+++|+++ .+.+..+|+++.++|||||++++.++..
T Consensus 135 ~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 178 (293)
T 3thr_A 135 ICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRNY 178 (293)
T ss_dssp EECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEEECH
T ss_pred EEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEeCCH
Confidence 998 89999998 4457899999999999999999998764
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.2e-15 Score=138.69 Aligned_cols=96 Identities=24% Similarity=0.312 Sum_probs=82.8
Q ss_pred HHHHHHcCCCCCCEEEEEcCccCcccccCCCcEEEEEeCCHHHHHHHHHcCCeEEEeecCCCCCCCCCccEEEehhhhhh
Q 016157 112 KVATFLNSLPSGSLVLDAGCGNGKYLGLNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHH 191 (394)
Q Consensus 112 ~l~~~l~~l~~g~~VLDvGCG~G~~l~~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~lp~~~~~fD~Vi~~~vl~h 191 (394)
.+...+....++.+|||||||+|.++... ...++|+|+|+. ++.++++|+.++++++++||+|++..++||
T Consensus 57 ~~~~~l~~~~~~~~vLDiG~G~G~~~~~l-~~~v~~~D~s~~--------~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 127 (215)
T 2zfu_A 57 RIARDLRQRPASLVVADFGCGDCRLASSI-RNPVHCFDLASL--------DPRVTVCDMAQVPLEDESVDVAVFCLSLMG 127 (215)
T ss_dssp HHHHHHHTSCTTSCEEEETCTTCHHHHHC-CSCEEEEESSCS--------STTEEESCTTSCSCCTTCEEEEEEESCCCS
T ss_pred HHHHHHhccCCCCeEEEECCcCCHHHHHh-hccEEEEeCCCC--------CceEEEeccccCCCCCCCEeEEEEehhccc
Confidence 36666666677889999999999986544 368999999988 688999999999988899999999999974
Q ss_pred cCChhHHHHHHHHHHhccccCcEEEEEEc
Q 016157 192 LSTESRRKKAIEELVRVVKKGSLVLITVW 220 (394)
Q Consensus 192 l~~~~~~~~~L~ei~r~LkpGG~lli~~~ 220 (394)
.+ +..+|+++.++|||||++++..+
T Consensus 128 -~~---~~~~l~~~~~~L~~gG~l~i~~~ 152 (215)
T 2zfu_A 128 -TN---IRDFLEEANRVLKPGGLLKVAEV 152 (215)
T ss_dssp -SC---HHHHHHHHHHHEEEEEEEEEEEC
T ss_pred -cC---HHHHHHHHHHhCCCCeEEEEEEc
Confidence 55 78999999999999999999864
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.2e-15 Score=144.68 Aligned_cols=107 Identities=25% Similarity=0.346 Sum_probs=92.7
Q ss_pred HHHHHHcCCCCCCEEEEEcCccCccccc--CCCcEEEEEeCCHHHHHHHHHc--CCeEEEeecCCCCCCCCCccEEEehh
Q 016157 112 KVATFLNSLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR--GHEVLVADAVNLPYRSDFGDAAISIA 187 (394)
Q Consensus 112 ~l~~~l~~l~~g~~VLDvGCG~G~~l~~--~~~~~v~gvD~S~~~l~~a~~~--~i~~~~~D~~~lp~~~~~fD~Vi~~~ 187 (394)
.+...+. +.++.+|||||||+|.++.. .++..|+|+|+|+.|++.|+++ ++.++.+|+.++|+ +++||+|++..
T Consensus 48 ~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~-~~~fD~v~~~~ 125 (279)
T 3ccf_A 48 DLLQLLN-PQPGEFILDLGCGTGQLTEKIAQSGAEVLGTDNAATMIEKARQNYPHLHFDVADARNFRV-DKPLDAVFSNA 125 (279)
T ss_dssp HHHHHHC-CCTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHCTTSCEEECCTTTCCC-SSCEEEEEEES
T ss_pred HHHHHhC-CCCCCEEEEecCCCCHHHHHHHhCCCeEEEEECCHHHHHHHHhhCCCCEEEECChhhCCc-CCCcCEEEEcc
Confidence 3444443 56778999999999997532 3778999999999999999987 79999999999987 68999999999
Q ss_pred hhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCcc
Q 016157 188 VLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVE 223 (394)
Q Consensus 188 vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~~ 223 (394)
+++|+++ +..+|+++.++|||||++++.++...
T Consensus 126 ~l~~~~d---~~~~l~~~~~~LkpgG~l~~~~~~~~ 158 (279)
T 3ccf_A 126 MLHWVKE---PEAAIASIHQALKSGGRFVAEFGGKG 158 (279)
T ss_dssp CGGGCSC---HHHHHHHHHHHEEEEEEEEEEEECTT
T ss_pred hhhhCcC---HHHHHHHHHHhcCCCcEEEEEecCCc
Confidence 9999998 78999999999999999999987643
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=2.2e-15 Score=134.55 Aligned_cols=109 Identities=23% Similarity=0.204 Sum_probs=90.3
Q ss_pred hHHHHHHHcCCCCCCEEEEEcCccCccccc--CCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeecCCCCCCCCCc
Q 016157 110 WPKVATFLNSLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFG 180 (394)
Q Consensus 110 ~~~l~~~l~~l~~g~~VLDvGCG~G~~l~~--~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~lp~~~~~f 180 (394)
+..+...+.. .++.+|||+|||+|.++.. ..+..++|+|+|+.+++.|+++ +++++.+|+.++++ +++|
T Consensus 21 ~~~l~~~~~~-~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~-~~~~ 98 (199)
T 2xvm_A 21 HSEVLEAVKV-VKPGKTLDLGCGNGRNSLYLAANGYDVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTF-DRQY 98 (199)
T ss_dssp CHHHHHHTTT-SCSCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGGGCCC-CCCE
T ss_pred cHHHHHHhhc-cCCCeEEEEcCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchhhCCC-CCCc
Confidence 4455565554 3567999999999997532 2367999999999999999875 57899999999888 8899
Q ss_pred cEEEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 016157 181 DAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 221 (394)
Q Consensus 181 D~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~ 221 (394)
|+|++..+++|++... +..+|+++.++|||||++++..+.
T Consensus 99 D~v~~~~~l~~~~~~~-~~~~l~~~~~~L~~gG~l~~~~~~ 138 (199)
T 2xvm_A 99 DFILSTVVLMFLEAKT-IPGLIANMQRCTKPGGYNLIVAAM 138 (199)
T ss_dssp EEEEEESCGGGSCGGG-HHHHHHHHHHTEEEEEEEEEEEEB
T ss_pred eEEEEcchhhhCCHHH-HHHHHHHHHHhcCCCeEEEEEEee
Confidence 9999999999998433 789999999999999998887654
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.2e-15 Score=143.93 Aligned_cols=102 Identities=29% Similarity=0.447 Sum_probs=91.3
Q ss_pred cCCCCCCEEEEEcCccCcccc----cCCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeecCCCCCCCCCccEEEeh
Q 016157 118 NSLPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFGDAAISI 186 (394)
Q Consensus 118 ~~l~~g~~VLDvGCG~G~~l~----~~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~lp~~~~~fD~Vi~~ 186 (394)
..++++.+|||||||+|.++. ..++..++|+|+|+.+++.|+++ +++++.+|+..+++++++||+|++.
T Consensus 33 ~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~ 112 (276)
T 3mgg_A 33 TVYPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKNVKFLQANIFSLPFEDSSFDHIFVC 112 (276)
T ss_dssp CCCCTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGCCSCTTCEEEEEEE
T ss_pred ccCCCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEcccccCCCCCCCeeEEEEe
Confidence 345788999999999999753 36688999999999999999876 5789999999999989999999999
Q ss_pred hhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCc
Q 016157 187 AVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAV 222 (394)
Q Consensus 187 ~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~ 222 (394)
.+++|+++ +..+|+++.++|||||.+++..+..
T Consensus 113 ~~l~~~~~---~~~~l~~~~~~L~pgG~l~~~~~~~ 145 (276)
T 3mgg_A 113 FVLEHLQS---PEEALKSLKKVLKPGGTITVIEGDH 145 (276)
T ss_dssp SCGGGCSC---HHHHHHHHHHHEEEEEEEEEEEECG
T ss_pred chhhhcCC---HHHHHHHHHHHcCCCcEEEEEEcCC
Confidence 99999998 7799999999999999999988654
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=1.7e-16 Score=159.29 Aligned_cols=99 Identities=13% Similarity=0.213 Sum_probs=84.3
Q ss_pred CCCCCEEEEEcCccCccccc--CCCcEEEEEeCCHHHHHHHHHcCCeEEE-----eecCCCCCCCCCccEEEehhhhhhc
Q 016157 120 LPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDRGHEVLV-----ADAVNLPYRSDFGDAAISIAVLHHL 192 (394)
Q Consensus 120 l~~g~~VLDvGCG~G~~l~~--~~~~~v~gvD~S~~~l~~a~~~~i~~~~-----~D~~~lp~~~~~fD~Vi~~~vl~hl 192 (394)
+.++.+|||||||+|.++.. ..+..++|+|+|+.|++.|+++++.... .+...+++.+++||+|++..+++|+
T Consensus 105 ~~~~~~VLDiGcG~G~~~~~l~~~g~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~fD~I~~~~vl~h~ 184 (416)
T 4e2x_A 105 TGPDPFIVEIGCNDGIMLRTIQEAGVRHLGFEPSSGVAAKAREKGIRVRTDFFEKATADDVRRTEGPANVIYAANTLCHI 184 (416)
T ss_dssp CSSSCEEEEETCTTTTTHHHHHHTTCEEEEECCCHHHHHHHHTTTCCEECSCCSHHHHHHHHHHHCCEEEEEEESCGGGC
T ss_pred CCCCCEEEEecCCCCHHHHHHHHcCCcEEEECCCHHHHHHHHHcCCCcceeeechhhHhhcccCCCCEEEEEECChHHhc
Confidence 45788999999999998653 3466999999999999999998766544 3444566777999999999999999
Q ss_pred CChhHHHHHHHHHHhccccCcEEEEEEcC
Q 016157 193 STESRRKKAIEELVRVVKKGSLVLITVWA 221 (394)
Q Consensus 193 ~~~~~~~~~L~ei~r~LkpGG~lli~~~~ 221 (394)
++ +..+|+++.++|||||++++.++.
T Consensus 185 ~d---~~~~l~~~~r~LkpgG~l~i~~~~ 210 (416)
T 4e2x_A 185 PY---VQSVLEGVDALLAPDGVFVFEDPY 210 (416)
T ss_dssp TT---HHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred CC---HHHHHHHHHHHcCCCeEEEEEeCC
Confidence 97 899999999999999999998765
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=5.2e-16 Score=148.47 Aligned_cols=99 Identities=14% Similarity=0.037 Sum_probs=78.8
Q ss_pred CCCCEEEEEcCccCccc--------ccCCCcE--EEEEeCCHHHHHHHHHc--------CCe--EEEeecCCCC------
Q 016157 121 PSGSLVLDAGCGNGKYL--------GLNPDCF--FVGCDISPSLIKICVDR--------GHE--VLVADAVNLP------ 174 (394)
Q Consensus 121 ~~g~~VLDvGCG~G~~l--------~~~~~~~--v~gvD~S~~~l~~a~~~--------~i~--~~~~D~~~lp------ 174 (394)
.++.+|||||||+|.+. ...++.. ++|+|+|++|++.|+++ ++. +..+++.+++
T Consensus 51 ~~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 130 (292)
T 2aot_A 51 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEK 130 (292)
T ss_dssp CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHTT
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhccc
Confidence 46679999999999632 1235664 49999999999999876 223 3445555443
Q ss_pred CCCCCccEEEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCc
Q 016157 175 YRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAV 222 (394)
Q Consensus 175 ~~~~~fD~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~ 222 (394)
+.+++||+|++..++||+++ +..+|+++.|+|||||++++.....
T Consensus 131 ~~~~~fD~V~~~~~l~~~~d---~~~~l~~~~r~LkpgG~l~i~~~~~ 175 (292)
T 2aot_A 131 KELQKWDFIHMIQMLYYVKD---IPATLKFFHSLLGTNAKMLIIVVSG 175 (292)
T ss_dssp TCCCCEEEEEEESCGGGCSC---HHHHHHHHHHTEEEEEEEEEEEECT
T ss_pred cCCCceeEEEEeeeeeecCC---HHHHHHHHHHHcCCCcEEEEEEecC
Confidence 55789999999999999999 8899999999999999999997654
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.60 E-value=1.3e-15 Score=141.63 Aligned_cols=130 Identities=11% Similarity=0.034 Sum_probs=99.2
Q ss_pred HHHHHHHhhcccccccc-------ccchHHHHHHHcCC--CCCCEEEEEcCccCccccc---CCCcEEEEEeCCHHHHHH
Q 016157 90 YVHRVYDAIAPHFSSTR-------FAKWPKVATFLNSL--PSGSLVLDAGCGNGKYLGL---NPDCFFVGCDISPSLIKI 157 (394)
Q Consensus 90 ~v~~~Yd~~a~~y~~~~-------~~~~~~l~~~l~~l--~~g~~VLDvGCG~G~~l~~---~~~~~v~gvD~S~~~l~~ 157 (394)
...++|+..+..|+... ......+..++..+ .++.+|||||||+|.++.. .....++|+|+|+.+++.
T Consensus 52 ~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~ 131 (254)
T 1xtp_A 52 KALEYWRTVPATVSGVLGGMDHVHDVDIEGSRNFIASLPGHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEE 131 (254)
T ss_dssp HHHHHHHTSCSSHHHHTTTCGGGHHHHHHHHHHHHHTSTTCCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHH
T ss_pred hhhhHHhcCCccccceecCcCccCHHHHHHHHHHHHhhcccCCCEEEEECCCcCHHHHHHHHhhcCEEEEEeCCHHHHHH
Confidence 45566776555443211 11111223444433 4678999999999997542 114579999999999999
Q ss_pred HHHc-----CCeEEEeecCCCCCCCCCccEEEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 016157 158 CVDR-----GHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (394)
Q Consensus 158 a~~~-----~i~~~~~D~~~lp~~~~~fD~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~ 220 (394)
|+++ ++.++++|+..+++++++||+|++..+++|+++.. +..+|+++.++|||||++++.++
T Consensus 132 a~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~-~~~~l~~~~~~LkpgG~l~i~~~ 198 (254)
T 1xtp_A 132 AKRELAGMPVGKFILASMETATLPPNTYDLIVIQWTAIYLTDAD-FVKFFKHCQQALTPNGYIFFKEN 198 (254)
T ss_dssp HHHHTTTSSEEEEEESCGGGCCCCSSCEEEEEEESCGGGSCHHH-HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred HHHHhccCCceEEEEccHHHCCCCCCCeEEEEEcchhhhCCHHH-HHHHHHHHHHhcCCCeEEEEEec
Confidence 9987 47899999999998889999999999999997533 78999999999999999999875
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=99.60 E-value=9e-16 Score=148.29 Aligned_cols=102 Identities=17% Similarity=0.125 Sum_probs=82.0
Q ss_pred CCCCEEEEEcCccCcccc---cCCCcEEEEEeCCHHHHHHHHHc----C---------CeEEEeec------CCC--CCC
Q 016157 121 PSGSLVLDAGCGNGKYLG---LNPDCFFVGCDISPSLIKICVDR----G---------HEVLVADA------VNL--PYR 176 (394)
Q Consensus 121 ~~g~~VLDvGCG~G~~l~---~~~~~~v~gvD~S~~~l~~a~~~----~---------i~~~~~D~------~~l--p~~ 176 (394)
+++.+|||||||+|..+. ...+..|+|+|+|+.|++.|+++ + +++.+.|+ .++ +++
T Consensus 47 ~~~~~VLDlGCG~G~~l~~~~~~~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~ 126 (302)
T 2vdw_A 47 SNKRKVLAIDFGNGADLEKYFYGEIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFY 126 (302)
T ss_dssp CSCCEEEETTCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTCC
T ss_pred CCCCeEEEEecCCcHhHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhcccc
Confidence 467899999999997543 23456999999999999999986 3 35778887 333 355
Q ss_pred CCCccEEEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCc
Q 016157 177 SDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAV 222 (394)
Q Consensus 177 ~~~fD~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~ 222 (394)
+++||+|+|..++||+.+.+....+|++++++|||||+|++.++..
T Consensus 127 ~~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~~i~~~~~~ 172 (302)
T 2vdw_A 127 FGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVLITTMDG 172 (302)
T ss_dssp SSCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEEEEEEEECH
T ss_pred CCCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCEEEEEeCCH
Confidence 7899999999999986443336899999999999999999998754
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=9.4e-16 Score=143.19 Aligned_cols=103 Identities=22% Similarity=0.241 Sum_probs=90.0
Q ss_pred CCCCCEEEEEcCccCccccc---CCCcEEEEEeCCHHHHHHHHHc-----CCeEEEeecCCCCCCCCCccEEEehhhhhh
Q 016157 120 LPSGSLVLDAGCGNGKYLGL---NPDCFFVGCDISPSLIKICVDR-----GHEVLVADAVNLPYRSDFGDAAISIAVLHH 191 (394)
Q Consensus 120 l~~g~~VLDvGCG~G~~l~~---~~~~~v~gvD~S~~~l~~a~~~-----~i~~~~~D~~~lp~~~~~fD~Vi~~~vl~h 191 (394)
+.++.+|||||||+|.++.. ..+..|+|+|+|+.+++.|+++ +++++++|+.++|+++++||+|++..+++|
T Consensus 53 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 132 (266)
T 3ujc_A 53 LNENSKVLDIGSGLGGGCMYINEKYGAHTHGIDICSNIVNMANERVSGNNKIIFEANDILTKEFPENNFDLIYSRDAILA 132 (266)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHTCCSCTTEEEEECCTTTCCCCTTCEEEEEEESCGGG
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEECccccCCCCCCcEEEEeHHHHHHh
Confidence 46788999999999997532 1167999999999999999987 578999999999998999999999999999
Q ss_pred cCChhHHHHHHHHHHhccccCcEEEEEEcCcc
Q 016157 192 LSTESRRKKAIEELVRVVKKGSLVLITVWAVE 223 (394)
Q Consensus 192 l~~~~~~~~~L~ei~r~LkpGG~lli~~~~~~ 223 (394)
++... +..+|+++.++|||||++++.++...
T Consensus 133 ~~~~~-~~~~l~~~~~~L~pgG~l~~~~~~~~ 163 (266)
T 3ujc_A 133 LSLEN-KNKLFQKCYKWLKPTGTLLITDYCAT 163 (266)
T ss_dssp SCHHH-HHHHHHHHHHHEEEEEEEEEEEEEES
T ss_pred cChHH-HHHHHHHHHHHcCCCCEEEEEEeccC
Confidence 95433 89999999999999999999987544
|
| >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... | Back alignment and structure |
|---|
Probab=99.60 E-value=1.8e-15 Score=144.30 Aligned_cols=99 Identities=21% Similarity=0.218 Sum_probs=79.6
Q ss_pred CCCCEEEEEcCccCccccc---CCCcEEEEEeCCHHHHHHHHHc---------------------C--------------
Q 016157 121 PSGSLVLDAGCGNGKYLGL---NPDCFFVGCDISPSLIKICVDR---------------------G-------------- 162 (394)
Q Consensus 121 ~~g~~VLDvGCG~G~~l~~---~~~~~v~gvD~S~~~l~~a~~~---------------------~-------------- 162 (394)
.++.+|||||||+|.+... .++..|+|+|+|+.|++.|+++ +
T Consensus 70 ~~~~~vLDiGcG~G~~~~l~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 149 (289)
T 2g72_A 70 VSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRA 149 (289)
T ss_dssp SCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHH
T ss_pred CCCCeEEEECCCcChHHHHhhccCCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHHh
Confidence 3678999999999995432 2466999999999999988772 1
Q ss_pred --CeEEEeecCC-CCC-----CCCCccEEEehhhhhhcCCh-hHHHHHHHHHHhccccCcEEEEEE
Q 016157 163 --HEVLVADAVN-LPY-----RSDFGDAAISIAVLHHLSTE-SRRKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 163 --i~~~~~D~~~-lp~-----~~~~fD~Vi~~~vl~hl~~~-~~~~~~L~ei~r~LkpGG~lli~~ 219 (394)
++++.+|+.+ +|+ ++++||+|+++.+++|+... ..+..+|+++.++|||||+|++..
T Consensus 150 ~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~~ 215 (289)
T 2g72_A 150 RVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIG 215 (289)
T ss_dssp HEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred hhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 3466779987 664 34679999999999996543 238899999999999999999974
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=2.6e-15 Score=144.02 Aligned_cols=102 Identities=18% Similarity=0.278 Sum_probs=87.4
Q ss_pred CCCCCEEEEEcCccCccccc---CCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeecCCCCCCCCCccEEEehhh
Q 016157 120 LPSGSLVLDAGCGNGKYLGL---NPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISIAV 188 (394)
Q Consensus 120 l~~g~~VLDvGCG~G~~l~~---~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~lp~~~~~fD~Vi~~~v 188 (394)
+.++.+|||||||+|.++.. ..+..|+|+|+|+.+++.|+++ +++++.+|+.++ +++||+|++..+
T Consensus 70 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---~~~fD~v~~~~~ 146 (302)
T 3hem_A 70 LEPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF---DEPVDRIVSLGA 146 (302)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC---CCCCSEEEEESC
T ss_pred CCCcCEEEEeeccCcHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHc---CCCccEEEEcch
Confidence 57889999999999997532 2147999999999999999887 478999999876 689999999999
Q ss_pred hhhcCCh------hHHHHHHHHHHhccccCcEEEEEEcCccc
Q 016157 189 LHHLSTE------SRRKKAIEELVRVVKKGSLVLITVWAVEQ 224 (394)
Q Consensus 189 l~hl~~~------~~~~~~L~ei~r~LkpGG~lli~~~~~~~ 224 (394)
++|++++ +....+|+++.++|||||++++.++....
T Consensus 147 ~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~ 188 (302)
T 3hem_A 147 FEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIPD 188 (302)
T ss_dssp GGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEEECCC
T ss_pred HHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEEEeccC
Confidence 9999763 33689999999999999999999886654
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.59 E-value=2.7e-15 Score=142.00 Aligned_cols=126 Identities=14% Similarity=0.154 Sum_probs=93.8
Q ss_pred HHHHhhcccccccccc----chHHHHHHHcCCCCCCEEEEEcCccCccccc--CCCcEEEEEeCCHHHHHHHHHcC-CeE
Q 016157 93 RVYDAIAPHFSSTRFA----KWPKVATFLNSLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDRG-HEV 165 (394)
Q Consensus 93 ~~Yd~~a~~y~~~~~~----~~~~l~~~l~~l~~g~~VLDvGCG~G~~l~~--~~~~~v~gvD~S~~~l~~a~~~~-i~~ 165 (394)
+.|+.++..|...... .|.........+.++.+|||||||+|.++.. ..+..|+|+|+|+.|++.|+++. ..+
T Consensus 12 ~~wd~~a~~f~~~~~~~~~~~~~~~il~~l~l~~g~~VLDlGcGtG~~a~~La~~g~~V~gvD~S~~ml~~Ar~~~~~~~ 91 (261)
T 3iv6_A 12 EAWELIGNQFWTIGRVAARPSDRENDIFLENIVPGSTVAVIGASTRFLIEKALERGASVTVFDFSQRMCDDLAEALADRC 91 (261)
T ss_dssp HHHHTTTTHHHHTSCGGGSCCHHHHHHHTTTCCTTCEEEEECTTCHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTSSSC
T ss_pred hHHHHHHHHHHHHhhccccHHHHHHHHHhcCCCCcCEEEEEeCcchHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcc
Confidence 5577777766554332 2332222223467889999999999997532 34679999999999999999872 224
Q ss_pred EEeecCCCCC-----CCCCccEEEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 016157 166 LVADAVNLPY-----RSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (394)
Q Consensus 166 ~~~D~~~lp~-----~~~~fD~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~ 220 (394)
+..++.+++. .+++||+|++..++||+...+ ...+++++.++| |||+++++..
T Consensus 92 v~~~~~~~~~~~~~~~~~~fD~Vv~~~~l~~~~~~~-~~~~l~~l~~lL-PGG~l~lS~~ 149 (261)
T 3iv6_A 92 VTIDLLDITAEIPKELAGHFDFVLNDRLINRFTTEE-ARRACLGMLSLV-GSGTVRASVK 149 (261)
T ss_dssp CEEEECCTTSCCCGGGTTCCSEEEEESCGGGSCHHH-HHHHHHHHHHHH-TTSEEEEEEE
T ss_pred ceeeeeecccccccccCCCccEEEEhhhhHhCCHHH-HHHHHHHHHHhC-cCcEEEEEec
Confidence 5666665543 257899999999999997654 788999999999 9999999874
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=1.7e-15 Score=146.32 Aligned_cols=103 Identities=16% Similarity=0.178 Sum_probs=90.1
Q ss_pred cCCCCCCEEEEEcCccCccccc---CCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeecCCCCCCCCCccEEEeh
Q 016157 118 NSLPSGSLVLDAGCGNGKYLGL---NPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISI 186 (394)
Q Consensus 118 ~~l~~g~~VLDvGCG~G~~l~~---~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~lp~~~~~fD~Vi~~ 186 (394)
..+.++.+|||||||+|.++.. ..+..|+|+|+|+.+++.|+++ +++++.+|+.++|+++++||+|++.
T Consensus 113 ~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~ 192 (312)
T 3vc1_A 113 GQAGPDDTLVDAGCGRGGSMVMAHRRFGSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDTPFDKGAVTASWNN 192 (312)
T ss_dssp CCCCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTTCEEEEEEE
T ss_pred ccCCCCCEEEEecCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhcCCCCCCCEeEEEEC
Confidence 3366889999999999997542 2267999999999999999875 4899999999999988999999999
Q ss_pred hhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCccc
Q 016157 187 AVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQ 224 (394)
Q Consensus 187 ~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~~~ 224 (394)
.+++|+ + +..+|+++.++|||||++++.++....
T Consensus 193 ~~l~~~-~---~~~~l~~~~~~LkpgG~l~~~~~~~~~ 226 (312)
T 3vc1_A 193 ESTMYV-D---LHDLFSEHSRFLKVGGRYVTITGCWNP 226 (312)
T ss_dssp SCGGGS-C---HHHHHHHHHHHEEEEEEEEEEEEEECT
T ss_pred CchhhC-C---HHHHHHHHHHHcCCCcEEEEEEccccc
Confidence 999999 4 789999999999999999999876544
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.58 E-value=4.3e-15 Score=141.18 Aligned_cols=109 Identities=19% Similarity=0.156 Sum_probs=90.8
Q ss_pred hHHHHHHHcCCCCCCEEEEEcCccCccccc--CCCcEEEEEeCCHHHHHHHHHc------CCeEEEeecCCCCCCCCCcc
Q 016157 110 WPKVATFLNSLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR------GHEVLVADAVNLPYRSDFGD 181 (394)
Q Consensus 110 ~~~l~~~l~~l~~g~~VLDvGCG~G~~l~~--~~~~~v~gvD~S~~~l~~a~~~------~i~~~~~D~~~lp~~~~~fD 181 (394)
...+...+... ++.+|||+|||+|.++.. ..+..|+|+|+|+.+++.|+++ +++++.+|+.++++ +++||
T Consensus 109 ~~~~~~~~~~~-~~~~vLD~GcG~G~~~~~l~~~g~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~-~~~fD 186 (286)
T 3m70_A 109 HGDVVDAAKII-SPCKVLDLGCGQGRNSLYLSLLGYDVTSWDHNENSIAFLNETKEKENLNISTALYDINAANI-QENYD 186 (286)
T ss_dssp CHHHHHHHHHS-CSCEEEEESCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCGGGCCC-CSCEE
T ss_pred HHHHHHHhhcc-CCCcEEEECCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEEeccccccc-cCCcc
Confidence 34555555444 678999999999997542 3367999999999999999886 57899999999887 78999
Q ss_pred EEEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 016157 182 AAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 221 (394)
Q Consensus 182 ~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~ 221 (394)
+|++..+++|++.+. ...+|+++.++|||||.+++..+.
T Consensus 187 ~i~~~~~~~~~~~~~-~~~~l~~~~~~LkpgG~l~i~~~~ 225 (286)
T 3m70_A 187 FIVSTVVFMFLNRER-VPSIIKNMKEHTNVGGYNLIVAAM 225 (286)
T ss_dssp EEEECSSGGGSCGGG-HHHHHHHHHHTEEEEEEEEEEEEB
T ss_pred EEEEccchhhCCHHH-HHHHHHHHHHhcCCCcEEEEEEec
Confidence 999999999997654 689999999999999998887653
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A | Back alignment and structure |
|---|
Probab=99.58 E-value=6.4e-15 Score=140.29 Aligned_cols=101 Identities=26% Similarity=0.355 Sum_probs=88.9
Q ss_pred HcCCCCCCEEEEEcCccCcccc----cCC-CcEEEEEeCCHHHHHHHHHc------CCeEEEeecCCCCCCCCCccEEEe
Q 016157 117 LNSLPSGSLVLDAGCGNGKYLG----LNP-DCFFVGCDISPSLIKICVDR------GHEVLVADAVNLPYRSDFGDAAIS 185 (394)
Q Consensus 117 l~~l~~g~~VLDvGCG~G~~l~----~~~-~~~v~gvD~S~~~l~~a~~~------~i~~~~~D~~~lp~~~~~fD~Vi~ 185 (394)
+..+.++.+|||||||+|.++. ..+ +..|+|+|+|+.+++.|+++ +++++++|+.++++ +++||+|++
T Consensus 17 ~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~-~~~fD~v~~ 95 (284)
T 3gu3_A 17 VWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIEL-NDKYDIAIC 95 (284)
T ss_dssp TSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSSEEEEEESCTTTCCC-SSCEEEEEE
T ss_pred HhccCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEEcchhhcCc-CCCeeEEEE
Confidence 3456778899999999999743 334 57999999999999999886 57899999999988 569999999
Q ss_pred hhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 016157 186 IAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 221 (394)
Q Consensus 186 ~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~ 221 (394)
..+++|+++ +..+|+++.++|||||++++..+.
T Consensus 96 ~~~l~~~~~---~~~~l~~~~~~LkpgG~l~~~~~~ 128 (284)
T 3gu3_A 96 HAFLLHMTT---PETMLQKMIHSVKKGGKIICFEPH 128 (284)
T ss_dssp ESCGGGCSS---HHHHHHHHHHTEEEEEEEEEEECC
T ss_pred CChhhcCCC---HHHHHHHHHHHcCCCCEEEEEecc
Confidence 999999998 789999999999999999999876
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.57 E-value=2.2e-15 Score=139.67 Aligned_cols=112 Identities=16% Similarity=0.145 Sum_probs=91.3
Q ss_pred HHHHHHcCCCCCCEEEEEcCccCccccc--CCCcEEEEEeCCHHHHHHHHHc----CCeEEEeecCCCCCCC-----CCc
Q 016157 112 KVATFLNSLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR----GHEVLVADAVNLPYRS-----DFG 180 (394)
Q Consensus 112 ~l~~~l~~l~~g~~VLDvGCG~G~~l~~--~~~~~v~gvD~S~~~l~~a~~~----~i~~~~~D~~~lp~~~-----~~f 180 (394)
.+..++..+.++.+|||||||+|.++.. ..+..|+|+|+|+.|++.|+++ +++++++|+.++++.. ..|
T Consensus 46 ~~~~~~~~~~~~~~vLD~GcG~G~~~~~la~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 125 (245)
T 3ggd_A 46 DLPRFELLFNPELPLIDFACGNGTQTKFLSQFFPRVIGLDVSKSALEIAAKENTAANISYRLLDGLVPEQAAQIHSEIGD 125 (245)
T ss_dssp HHHHHTTTSCTTSCEEEETCTTSHHHHHHHHHSSCEEEEESCHHHHHHHHHHSCCTTEEEEECCTTCHHHHHHHHHHHCS
T ss_pred HHHHHhhccCCCCeEEEEcCCCCHHHHHHHHhCCCEEEEECCHHHHHHHHHhCcccCceEEECcccccccccccccccCc
Confidence 3444555678889999999999997542 1223899999999999999887 6899999999876432 349
Q ss_pred cEEEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCccc
Q 016157 181 DAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQ 224 (394)
Q Consensus 181 D~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~~~ 224 (394)
|+|++..++||++... +..+|+++.++|||||++++..+....
T Consensus 126 d~v~~~~~~~~~~~~~-~~~~l~~~~~~LkpgG~l~i~~~~~~~ 168 (245)
T 3ggd_A 126 ANIYMRTGFHHIPVEK-RELLGQSLRILLGKQGAMYLIELGTGC 168 (245)
T ss_dssp CEEEEESSSTTSCGGG-HHHHHHHHHHHHTTTCEEEEEEECTTH
T ss_pred cEEEEcchhhcCCHHH-HHHHHHHHHHHcCCCCEEEEEeCCccc
Confidence 9999999999998433 789999999999999999999886543
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A | Back alignment and structure |
|---|
Probab=99.57 E-value=1.2e-14 Score=130.60 Aligned_cols=108 Identities=19% Similarity=0.256 Sum_probs=89.1
Q ss_pred HHHHHcCCCCCCEEEEEcCccCccccc--CCCcEEEEEeCCHHHHHHHHHc------CCeEEEeecCCCCCCCCCccEEE
Q 016157 113 VATFLNSLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR------GHEVLVADAVNLPYRSDFGDAAI 184 (394)
Q Consensus 113 l~~~l~~l~~g~~VLDvGCG~G~~l~~--~~~~~v~gvD~S~~~l~~a~~~------~i~~~~~D~~~lp~~~~~fD~Vi 184 (394)
+..++..++++ +|||||||+|.++.. ..+..++|+|+|+.+++.|+++ ++.++.+|+.++++++++||+|+
T Consensus 21 l~~~~~~~~~~-~vLdiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~ 99 (202)
T 2kw5_A 21 LVSVANQIPQG-KILCLAEGEGRNACFLASLGYEVTAVDQSSVGLAKAKQLAQEKGVKITTVQSNLADFDIVADAWEGIV 99 (202)
T ss_dssp HHHHHHHSCSS-EEEECCCSCTHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHTCCEEEECCBTTTBSCCTTTCSEEE
T ss_pred HHHHHHhCCCC-CEEEECCCCCHhHHHHHhCCCeEEEEECCHHHHHHHHHHHHhcCCceEEEEcChhhcCCCcCCccEEE
Confidence 44555566788 999999999997532 3467999999999999999876 57899999999988889999999
Q ss_pred ehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCccc
Q 016157 185 SIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQ 224 (394)
Q Consensus 185 ~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~~~ 224 (394)
+. +.|+. ...+..+|+++.++|||||++++.++....
T Consensus 100 ~~--~~~~~-~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~ 136 (202)
T 2kw5_A 100 SI--FCHLP-SSLRQQLYPKVYQGLKPGGVFILEGFAPEQ 136 (202)
T ss_dssp EE--CCCCC-HHHHHHHHHHHHTTCCSSEEEEEEEECTTT
T ss_pred EE--hhcCC-HHHHHHHHHHHHHhcCCCcEEEEEEecccc
Confidence 95 34553 334789999999999999999999987654
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=99.57 E-value=6.1e-15 Score=134.32 Aligned_cols=99 Identities=23% Similarity=0.313 Sum_probs=87.5
Q ss_pred CCCCEEEEEcCccCccccc--CCCcEEEEEeCCHHHHHHHHHcCCeEEEeecCC--CCCCCCCccEEEehhhhhhcCChh
Q 016157 121 PSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDRGHEVLVADAVN--LPYRSDFGDAAISIAVLHHLSTES 196 (394)
Q Consensus 121 ~~g~~VLDvGCG~G~~l~~--~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~--lp~~~~~fD~Vi~~~vl~hl~~~~ 196 (394)
.++.+|||+|||+|.++.. ..+..++|+|+|+.+++.++++..+++.+|+.+ +++.+++||+|++..+++|+++
T Consensus 31 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~v~~~~~l~~~~~-- 108 (230)
T 3cc8_A 31 KEWKEVLDIGCSSGALGAAIKENGTRVSGIEAFPEAAEQAKEKLDHVVLGDIETMDMPYEEEQFDCVIFGDVLEHLFD-- 108 (230)
T ss_dssp TTCSEEEEETCTTSHHHHHHHTTTCEEEEEESSHHHHHHHHTTSSEEEESCTTTCCCCSCTTCEEEEEEESCGGGSSC--
T ss_pred cCCCcEEEeCCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHhCCcEEEcchhhcCCCCCCCccCEEEECChhhhcCC--
Confidence 5778999999999997532 225899999999999999998878999999987 6677789999999999999998
Q ss_pred HHHHHHHHHHhccccCcEEEEEEcCc
Q 016157 197 RRKKAIEELVRVVKKGSLVLITVWAV 222 (394)
Q Consensus 197 ~~~~~L~ei~r~LkpGG~lli~~~~~ 222 (394)
+..+|+++.++|||||.+++.++..
T Consensus 109 -~~~~l~~~~~~L~~gG~l~~~~~~~ 133 (230)
T 3cc8_A 109 -PWAVIEKVKPYIKQNGVILASIPNV 133 (230)
T ss_dssp -HHHHHHHTGGGEEEEEEEEEEEECT
T ss_pred -HHHHHHHHHHHcCCCCEEEEEeCCc
Confidence 7899999999999999999998664
|
| >2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} | Back alignment and structure |
|---|
Probab=99.55 E-value=2.7e-14 Score=135.96 Aligned_cols=133 Identities=20% Similarity=0.187 Sum_probs=98.0
Q ss_pred HHHHHHHhhcccccccc---ccchHHHHHHHcCCCCCCEEEEEcCcc---Ccccc----cCCCcEEEEEeCCHHHHHHHH
Q 016157 90 YVHRVYDAIAPHFSSTR---FAKWPKVATFLNSLPSGSLVLDAGCGN---GKYLG----LNPDCFFVGCDISPSLIKICV 159 (394)
Q Consensus 90 ~v~~~Yd~~a~~y~~~~---~~~~~~l~~~l~~l~~g~~VLDvGCG~---G~~l~----~~~~~~v~gvD~S~~~l~~a~ 159 (394)
.+.+.|.+..+.|.... .....++...+.......+|||||||+ |.++. ..++.+|+|+|+|+.|++.|+
T Consensus 42 ~~~~~~~~~~p~~~~~a~~~~~~~~~~~~~l~~~~~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar 121 (274)
T 2qe6_A 42 ALADYACKHIPGLKESAIENRKVLVRGVRFLAGEAGISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGR 121 (274)
T ss_dssp HHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHTTTCCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHH
T ss_pred HHHHHHHHhcchhHHHHHHHhHHHHHHHHHHhhccCCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHH
Confidence 34455666655554211 111123333443223447999999999 97643 357889999999999999999
Q ss_pred Hc-----CCeEEEeecCCCC-----------CCCCCccEEEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCcc
Q 016157 160 DR-----GHEVLVADAVNLP-----------YRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVE 223 (394)
Q Consensus 160 ~~-----~i~~~~~D~~~lp-----------~~~~~fD~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~~ 223 (394)
++ +++++++|+.+.+ ++.++||+|++..++||+++.+ +..+|+++.++|||||+|++..+..+
T Consensus 122 ~~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~~d~~~~d~v~~~~vlh~~~d~~-~~~~l~~~~~~L~pGG~l~i~~~~~~ 200 (274)
T 2qe6_A 122 ALLAKDPNTAVFTADVRDPEYILNHPDVRRMIDFSRPAAIMLVGMLHYLSPDV-VDRVVGAYRDALAPGSYLFMTSLVDT 200 (274)
T ss_dssp HHHTTCTTEEEEECCTTCHHHHHHSHHHHHHCCTTSCCEEEETTTGGGSCTTT-HHHHHHHHHHHSCTTCEEEEEEEBCS
T ss_pred HhcCCCCCeEEEEeeCCCchhhhccchhhccCCCCCCEEEEEechhhhCCcHH-HHHHHHHHHHhCCCCcEEEEEEecCc
Confidence 86 5889999997632 2235899999999999999864 78999999999999999999987653
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=7.8e-15 Score=139.34 Aligned_cols=101 Identities=22% Similarity=0.275 Sum_probs=86.4
Q ss_pred CCCCCEEEEEcCccCccccc---CCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeecCCCCCCCCCccEEEehhh
Q 016157 120 LPSGSLVLDAGCGNGKYLGL---NPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISIAV 188 (394)
Q Consensus 120 l~~g~~VLDvGCG~G~~l~~---~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~lp~~~~~fD~Vi~~~v 188 (394)
+.++.+|||||||+|.++.. ..+..|+|+|+|+.+++.|+++ +++++.+|+.++| ++||+|++..+
T Consensus 62 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~---~~fD~v~~~~~ 138 (287)
T 1kpg_A 62 LQPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFD---EPVDRIVSIGA 138 (287)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCC---CCCSEEEEESC
T ss_pred CCCcCEEEEECCcccHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhhCC---CCeeEEEEeCc
Confidence 46788999999999987532 2256999999999999999886 5789999998876 78999999999
Q ss_pred hhhcCChhHHHHHHHHHHhccccCcEEEEEEcCccc
Q 016157 189 LHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQ 224 (394)
Q Consensus 189 l~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~~~ 224 (394)
++|++... +..+|+++.++|||||++++.++....
T Consensus 139 l~~~~~~~-~~~~l~~~~~~LkpgG~l~~~~~~~~~ 173 (287)
T 1kpg_A 139 FEHFGHER-YDAFFSLAHRLLPADGVMLLHTITGLH 173 (287)
T ss_dssp GGGTCTTT-HHHHHHHHHHHSCTTCEEEEEEEEECC
T ss_pred hhhcChHH-HHHHHHHHHHhcCCCCEEEEEEecCCC
Confidence 99995433 789999999999999999999876544
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.54 E-value=1.6e-14 Score=131.76 Aligned_cols=105 Identities=25% Similarity=0.344 Sum_probs=86.9
Q ss_pred HcCCCCCCEEEEEcCccCccccc--CCCcEEEEEeCCHHHHHHHHHc------CCeEEEeecCCCCCCCCCccEEEehhh
Q 016157 117 LNSLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR------GHEVLVADAVNLPYRSDFGDAAISIAV 188 (394)
Q Consensus 117 l~~l~~g~~VLDvGCG~G~~l~~--~~~~~v~gvD~S~~~l~~a~~~------~i~~~~~D~~~lp~~~~~fD~Vi~~~v 188 (394)
+..++++.+|||+|||+|.++.. ..+..++|+|+|+.+++.|+++ +++++.+|+.++++++++||+|++..+
T Consensus 33 ~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~ 112 (227)
T 1ve3_A 33 MKYMKKRGKVLDLACGVGGFSFLLEDYGFEVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDS 112 (227)
T ss_dssp HHSCCSCCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCEEEEEEESC
T ss_pred HHhcCCCCeEEEEeccCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCCceEEECchhcCCCCCCcEEEEEEcCc
Confidence 34566788999999999987532 2233999999999999999875 589999999998888889999999999
Q ss_pred hhhcCChhHHHHHHHHHHhccccCcEEEEEEcCc
Q 016157 189 LHHLSTESRRKKAIEELVRVVKKGSLVLITVWAV 222 (394)
Q Consensus 189 l~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~ 222 (394)
+++..... +..+|+++.++|||||++++..+..
T Consensus 113 ~~~~~~~~-~~~~l~~~~~~L~~gG~l~~~~~~~ 145 (227)
T 1ve3_A 113 IVHFEPLE-LNQVFKEVRRVLKPSGKFIMYFTDL 145 (227)
T ss_dssp GGGCCHHH-HHHHHHHHHHHEEEEEEEEEEEECH
T ss_pred hHhCCHHH-HHHHHHHHHHHcCCCcEEEEEecCh
Confidence 55554322 7899999999999999999987653
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.54 E-value=4.8e-15 Score=142.07 Aligned_cols=99 Identities=18% Similarity=0.239 Sum_probs=83.7
Q ss_pred CCCCEEEEEcCccCcccc----cCCCcEEEEEeCCHHHHHHHHHc-----------------------------------
Q 016157 121 PSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR----------------------------------- 161 (394)
Q Consensus 121 ~~g~~VLDvGCG~G~~l~----~~~~~~v~gvD~S~~~l~~a~~~----------------------------------- 161 (394)
.++.+|||||||+|.++. ..+...|+|+|+|+.|++.|+++
T Consensus 45 ~~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (292)
T 3g07_A 45 FRGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRS 124 (292)
T ss_dssp TTTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC----------------------------------
T ss_pred cCCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhccccccccccccccccccccccccccc
Confidence 467899999999999753 35678999999999999999875
Q ss_pred ------------------------------CCeEEEeecCCCC-----CCCCCccEEEehhhhhhcC---ChhHHHHHHH
Q 016157 162 ------------------------------GHEVLVADAVNLP-----YRSDFGDAAISIAVLHHLS---TESRRKKAIE 203 (394)
Q Consensus 162 ------------------------------~i~~~~~D~~~lp-----~~~~~fD~Vi~~~vl~hl~---~~~~~~~~L~ 203 (394)
+++++++|+...+ +..++||+|+|..+++|+. ..+.+.++|+
T Consensus 125 ~~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~~l~ 204 (292)
T 3g07_A 125 CFPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRMFR 204 (292)
T ss_dssp -----------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHHHHHHHHH
Confidence 4788899988654 5678999999999998884 3334889999
Q ss_pred HHHhccccCcEEEEEE
Q 016157 204 ELVRVVKKGSLVLITV 219 (394)
Q Consensus 204 ei~r~LkpGG~lli~~ 219 (394)
++.++|||||+|++..
T Consensus 205 ~~~~~LkpGG~lil~~ 220 (292)
T 3g07_A 205 RIYRHLRPGGILVLEP 220 (292)
T ss_dssp HHHHHEEEEEEEEEEC
T ss_pred HHHHHhCCCcEEEEec
Confidence 9999999999999974
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.53 E-value=3e-14 Score=126.21 Aligned_cols=102 Identities=25% Similarity=0.358 Sum_probs=88.2
Q ss_pred CCCCCEEEEEcCccCccccc--CCCcEEEEEeCCHHHHHHHHHc--CCeEEEeecCCCCCCCCCccEEEeh-hhhhhcCC
Q 016157 120 LPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR--GHEVLVADAVNLPYRSDFGDAAISI-AVLHHLST 194 (394)
Q Consensus 120 l~~g~~VLDvGCG~G~~l~~--~~~~~v~gvD~S~~~l~~a~~~--~i~~~~~D~~~lp~~~~~fD~Vi~~-~vl~hl~~ 194 (394)
++++.+|||+|||+|.++.. ..+..++|+|+++.+++.++++ ++.++.+|+.++++++++||+|++. .+++|+..
T Consensus 44 ~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~~~~~~~~~ 123 (195)
T 3cgg_A 44 APRGAKILDAGCGQGRIGGYLSKQGHDVLGTDLDPILIDYAKQDFPEARWVVGDLSVDQISETDFDLIVSAGNVMGFLAE 123 (195)
T ss_dssp SCTTCEEEEETCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHCTTSEEEECCTTTSCCCCCCEEEEEECCCCGGGSCH
T ss_pred ccCCCeEEEECCCCCHHHHHHHHCCCcEEEEcCCHHHHHHHHHhCCCCcEEEcccccCCCCCCceeEEEECCcHHhhcCh
Confidence 56888999999999997532 2367999999999999999987 6899999999988888899999998 78888864
Q ss_pred hhHHHHHHHHHHhccccCcEEEEEEcCc
Q 016157 195 ESRRKKAIEELVRVVKKGSLVLITVWAV 222 (394)
Q Consensus 195 ~~~~~~~L~ei~r~LkpGG~lli~~~~~ 222 (394)
.. ...+|+++.++|||||.+++.....
T Consensus 124 ~~-~~~~l~~~~~~l~~~G~l~~~~~~~ 150 (195)
T 3cgg_A 124 DG-REPALANIHRALGADGRAVIGFGAG 150 (195)
T ss_dssp HH-HHHHHHHHHHHEEEEEEEEEEEETT
T ss_pred HH-HHHHHHHHHHHhCCCCEEEEEeCCC
Confidence 33 6899999999999999999987653
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.53 E-value=1.6e-14 Score=134.37 Aligned_cols=98 Identities=18% Similarity=0.281 Sum_probs=81.4
Q ss_pred CCCCEEEEEcCccCccccc--CCCcEEEEEeCCHHHHHHHHHc------CCeEEEeecCCCCCCCCCccEEEehh-hhhh
Q 016157 121 PSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR------GHEVLVADAVNLPYRSDFGDAAISIA-VLHH 191 (394)
Q Consensus 121 ~~g~~VLDvGCG~G~~l~~--~~~~~v~gvD~S~~~l~~a~~~------~i~~~~~D~~~lp~~~~~fD~Vi~~~-vl~h 191 (394)
+++.+|||+|||+|.++.. ..+..++|+|+|+.|++.|+++ ++.++++|+.+++++ ++||+|++.. .++|
T Consensus 40 ~~~~~vLDlGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~v~~~~~~~~~ 118 (252)
T 1wzn_A 40 REVRRVLDLACGTGIPTLELAERGYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFK-NEFDAVTMFFSTIMY 118 (252)
T ss_dssp SCCCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCC-SCEEEEEECSSGGGG
T ss_pred cCCCEEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHhcCCceEEEECChhhcccC-CCccEEEEcCCchhc
Confidence 4678999999999997532 3467999999999999999876 489999999998864 6899999874 5555
Q ss_pred cCChhHHHHHHHHHHhccccCcEEEEEEc
Q 016157 192 LSTESRRKKAIEELVRVVKKGSLVLITVW 220 (394)
Q Consensus 192 l~~~~~~~~~L~ei~r~LkpGG~lli~~~ 220 (394)
+. .+....+|+++.++|||||.+++.+.
T Consensus 119 ~~-~~~~~~~l~~~~~~L~pgG~li~~~~ 146 (252)
T 1wzn_A 119 FD-EEDLRKLFSKVAEALKPGGVFITDFP 146 (252)
T ss_dssp SC-HHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CC-HHHHHHHHHHHHHHcCCCeEEEEecc
Confidence 54 34478999999999999999998764
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=2.6e-14 Score=137.90 Aligned_cols=103 Identities=22% Similarity=0.212 Sum_probs=86.3
Q ss_pred CCCCCEEEEEcCccCccccc---CCCcEEEEEeCCHHHHHHHHHc--------------CCeEEEeecCCCC----CC--
Q 016157 120 LPSGSLVLDAGCGNGKYLGL---NPDCFFVGCDISPSLIKICVDR--------------GHEVLVADAVNLP----YR-- 176 (394)
Q Consensus 120 l~~g~~VLDvGCG~G~~l~~---~~~~~v~gvD~S~~~l~~a~~~--------------~i~~~~~D~~~lp----~~-- 176 (394)
++++.+|||||||+|.++.. .+...++|+|+|+.|++.|+++ +++++++|+..++ +.
T Consensus 32 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 111 (313)
T 3bgv_A 32 KKRDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDP 111 (313)
T ss_dssp C--CCEEEEETCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSST
T ss_pred cCCCCEEEEECCCCcHHHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccC
Confidence 35778999999999997542 4567999999999999999875 3689999999876 53
Q ss_pred CCCccEEEehhhhhhc-CChhHHHHHHHHHHhccccCcEEEEEEcCc
Q 016157 177 SDFGDAAISIAVLHHL-STESRRKKAIEELVRVVKKGSLVLITVWAV 222 (394)
Q Consensus 177 ~~~fD~Vi~~~vl~hl-~~~~~~~~~L~ei~r~LkpGG~lli~~~~~ 222 (394)
+++||+|++..++||+ .+.+.+..+|+++.++|||||.+++.++..
T Consensus 112 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~ 158 (313)
T 3bgv_A 112 QMCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTPNS 158 (313)
T ss_dssp TCCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEECH
T ss_pred CCCEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEEEecCCh
Confidence 4589999999999998 565557899999999999999999998764
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=2.6e-14 Score=126.80 Aligned_cols=105 Identities=22% Similarity=0.263 Sum_probs=78.9
Q ss_pred CCCCCCEEEEEcCccCccccc--CCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeecCCCC-CCCCCccEEEeh-h
Q 016157 119 SLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLP-YRSDFGDAAISI-A 187 (394)
Q Consensus 119 ~l~~g~~VLDvGCG~G~~l~~--~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~lp-~~~~~fD~Vi~~-~ 187 (394)
.++++.+|||+|||+|.++.. ..+..|+|+|+|+.|++.|+++ ++++++.+...++ +.+++||+|++. .
T Consensus 19 ~~~~~~~vLDiGcG~G~~~~~la~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~~~~~~~fD~v~~~~~ 98 (185)
T 3mti_A 19 VLDDESIVVDATMGNGNDTAFLAGLSKKVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLDHYVREPIRAAIFNLG 98 (185)
T ss_dssp TCCTTCEEEESCCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGGGTCCSCEEEEEEEEC
T ss_pred hCCCCCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHhhccCCcCEEEEeCC
Confidence 467889999999999997532 2378999999999999999876 4788888887754 447889999987 3
Q ss_pred hhhh-----cCChhHHHHHHHHHHhccccCcEEEEEEcCcc
Q 016157 188 VLHH-----LSTESRRKKAIEELVRVVKKGSLVLITVWAVE 223 (394)
Q Consensus 188 vl~h-----l~~~~~~~~~L~ei~r~LkpGG~lli~~~~~~ 223 (394)
.+++ ....+....+|+++.++|||||++++.+|...
T Consensus 99 ~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~ 139 (185)
T 3mti_A 99 YLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIYYGH 139 (185)
T ss_dssp -----------CHHHHHHHHHHHHHHEEEEEEEEEEEC---
T ss_pred CCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEeCCC
Confidence 3332 11223367889999999999999999988643
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=5.5e-14 Score=134.84 Aligned_cols=98 Identities=13% Similarity=0.166 Sum_probs=83.6
Q ss_pred HHcCCCCCCEEEEEcCccCccc----ccCCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeecCCCCCCCCCccEEE
Q 016157 116 FLNSLPSGSLVLDAGCGNGKYL----GLNPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFGDAAI 184 (394)
Q Consensus 116 ~l~~l~~g~~VLDvGCG~G~~l----~~~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~lp~~~~~fD~Vi 184 (394)
.+..++++.+|||||||+|.++ ...++.+|+|+|+|+.|++.|+++ +++++++|+.+++ +++||+|+
T Consensus 116 ~la~l~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa~~l~--d~~FDvV~ 193 (298)
T 3fpf_A 116 ALGRFRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDETVID--GLEFDVLM 193 (298)
T ss_dssp HHTTCCTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTCCSEEEEESCGGGGG--GCCCSEEE
T ss_pred HHcCCCCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEECchhhCC--CCCcCEEE
Confidence 3567889999999999999753 235788999999999999999986 4789999999876 68999999
Q ss_pred ehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 016157 185 SIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 221 (394)
Q Consensus 185 ~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~ 221 (394)
+... .++ ..++++++.++|||||+|++..+.
T Consensus 194 ~~a~---~~d---~~~~l~el~r~LkPGG~Lvv~~~~ 224 (298)
T 3fpf_A 194 VAAL---AEP---KRRVFRNIHRYVDTETRIIYRTYT 224 (298)
T ss_dssp ECTT---CSC---HHHHHHHHHHHCCTTCEEEEEECC
T ss_pred ECCC---ccC---HHHHHHHHHHHcCCCcEEEEEcCc
Confidence 8665 445 789999999999999999998753
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=3e-14 Score=137.47 Aligned_cols=101 Identities=19% Similarity=0.291 Sum_probs=86.6
Q ss_pred CCCCCEEEEEcCccCccccc---CCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeecCCCCCCCCCccEEEehhh
Q 016157 120 LPSGSLVLDAGCGNGKYLGL---NPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISIAV 188 (394)
Q Consensus 120 l~~g~~VLDvGCG~G~~l~~---~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~lp~~~~~fD~Vi~~~v 188 (394)
+.++.+|||||||+|.++.. ..+..|+|+|+|+.+++.|+++ +++++.+|+.++| ++||+|++..+
T Consensus 88 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---~~fD~v~~~~~ 164 (318)
T 2fk8_A 88 LKPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFA---EPVDRIVSIEA 164 (318)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCC---CCCSEEEEESC
T ss_pred CCCcCEEEEEcccchHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHCC---CCcCEEEEeCh
Confidence 46788999999999987532 1167999999999999999886 3789999998875 78999999999
Q ss_pred hhhcCChhHHHHHHHHHHhccccCcEEEEEEcCccc
Q 016157 189 LHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQ 224 (394)
Q Consensus 189 l~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~~~ 224 (394)
++|++... +..+|+++.++|||||++++.++....
T Consensus 165 l~~~~~~~-~~~~l~~~~~~LkpgG~l~~~~~~~~~ 199 (318)
T 2fk8_A 165 FEHFGHEN-YDDFFKRCFNIMPADGRMTVQSSVSYH 199 (318)
T ss_dssp GGGTCGGG-HHHHHHHHHHHSCTTCEEEEEEEECCC
T ss_pred HHhcCHHH-HHHHHHHHHHhcCCCcEEEEEEeccCC
Confidence 99996433 789999999999999999999887654
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=6.2e-15 Score=136.40 Aligned_cols=101 Identities=13% Similarity=0.023 Sum_probs=80.3
Q ss_pred CCCCCEEEEEcCccCccccc---CCCcEEEEEeCCHHHHHHHHHc------CCeEEEeecCCC--CCCCCCccEEEe-hh
Q 016157 120 LPSGSLVLDAGCGNGKYLGL---NPDCFFVGCDISPSLIKICVDR------GHEVLVADAVNL--PYRSDFGDAAIS-IA 187 (394)
Q Consensus 120 l~~g~~VLDvGCG~G~~l~~---~~~~~v~gvD~S~~~l~~a~~~------~i~~~~~D~~~l--p~~~~~fD~Vi~-~~ 187 (394)
..++.+|||||||+|.++.. .....|+|+|+|+.|++.|+++ +++++++|+.++ ++++++||+|++ ..
T Consensus 58 ~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~d~~ 137 (236)
T 1zx0_A 58 SSKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTY 137 (236)
T ss_dssp TTTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCC
T ss_pred CCCCCeEEEEeccCCHHHHHHHhcCCCeEEEEcCCHHHHHHHHHHHHhcCCCeEEEecCHHHhhcccCCCceEEEEECCc
Confidence 35788999999999997542 2334899999999999999986 378899999988 888899999999 44
Q ss_pred hh--hhcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 016157 188 VL--HHLSTESRRKKAIEELVRVVKKGSLVLITVWA 221 (394)
Q Consensus 188 vl--~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~ 221 (394)
.+ +.+. ...+..+++++.|+|||||+|++..+.
T Consensus 138 ~~~~~~~~-~~~~~~~l~~~~r~LkpgG~l~~~~~~ 172 (236)
T 1zx0_A 138 PLSEETWH-THQFNFIKNHAFRLLKPGGVLTYCNLT 172 (236)
T ss_dssp CCBGGGTT-THHHHHHHHTHHHHEEEEEEEEECCHH
T ss_pred ccchhhhh-hhhHHHHHHHHHHhcCCCeEEEEEecC
Confidence 42 2222 233668899999999999999987643
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.5e-13 Score=134.56 Aligned_cols=99 Identities=19% Similarity=0.295 Sum_probs=84.3
Q ss_pred CCEEEEEcCccCcccc----cCCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeecCCCC-CCCCCccEEEehhhh
Q 016157 123 GSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLP-YRSDFGDAAISIAVL 189 (394)
Q Consensus 123 g~~VLDvGCG~G~~l~----~~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~lp-~~~~~fD~Vi~~~vl 189 (394)
+.+|||||||+|.++. ..++..++++|+ +.+++.|+++ +++++.+|+.+.+ +..+.||+|++..++
T Consensus 180 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~vl 258 (352)
T 3mcz_A 180 ARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDL-PTTRDAARKTIHAHDLGGRVEFFEKNLLDARNFEGGAADVVMLNDCL 258 (352)
T ss_dssp CCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCGGGEEEEECCTTCGGGGTTCCEEEEEEESCG
T ss_pred CCEEEEeCCCcCHHHHHHHHhCCCCeEEEEEC-HHHHHHHHHHHHhcCCCCceEEEeCCcccCcccCCCCccEEEEeccc
Confidence 7899999999999753 467889999999 8899988875 4899999999876 134669999999999
Q ss_pred hhcCChhHHHHHHHHHHhccccCcEEEEEEcCcc
Q 016157 190 HHLSTESRRKKAIEELVRVVKKGSLVLITVWAVE 223 (394)
Q Consensus 190 ~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~~ 223 (394)
||++++. ...+|+++.++|||||++++..+...
T Consensus 259 h~~~~~~-~~~~l~~~~~~L~pgG~l~i~e~~~~ 291 (352)
T 3mcz_A 259 HYFDARE-AREVIGHAAGLVKPGGALLILTMTMN 291 (352)
T ss_dssp GGSCHHH-HHHHHHHHHHTEEEEEEEEEEEECCC
T ss_pred ccCCHHH-HHHHHHHHHHHcCCCCEEEEEEeccC
Confidence 9998644 68999999999999999999876543
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=1.2e-14 Score=135.19 Aligned_cols=97 Identities=13% Similarity=0.021 Sum_probs=78.2
Q ss_pred CCCCCEEEEEcCccCccccc---CCCcEEEEEeCCHHHHHHHHHc------CCeEEEeecCCC--CCCCCCccEEEe---
Q 016157 120 LPSGSLVLDAGCGNGKYLGL---NPDCFFVGCDISPSLIKICVDR------GHEVLVADAVNL--PYRSDFGDAAIS--- 185 (394)
Q Consensus 120 l~~g~~VLDvGCG~G~~l~~---~~~~~v~gvD~S~~~l~~a~~~------~i~~~~~D~~~l--p~~~~~fD~Vi~--- 185 (394)
.++|.+|||||||+|..+.. .....++|||+|+.+++.|+++ ++.++.+|+..+ ++++++||.|+.
T Consensus 58 ~~~G~rVLdiG~G~G~~~~~~~~~~~~~v~~id~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~FD~i~~D~~ 137 (236)
T 3orh_A 58 SSKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTY 137 (236)
T ss_dssp TTTCEEEEEECCTTSHHHHHHTTSCEEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCC
T ss_pred ccCCCeEEEECCCccHHHHHHHHhCCcEEEEEeCCHHHHHHHHHHHhhCCCceEEEeehHHhhcccccccCCceEEEeee
Confidence 36788999999999986532 3335899999999999999986 357788887653 467889999974
Q ss_pred --hhhhhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 016157 186 --IAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 186 --~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~ 219 (394)
...++|+.+ +..+++++.|+|||||+|++..
T Consensus 138 ~~~~~~~~~~~---~~~~~~e~~rvLkPGG~l~f~~ 170 (236)
T 3orh_A 138 PLSEETWHTHQ---FNFIKNHAFRLLKPGGVLTYCN 170 (236)
T ss_dssp CCBGGGTTTHH---HHHHHHTHHHHEEEEEEEEECC
T ss_pred ecccchhhhcc---hhhhhhhhhheeCCCCEEEEEe
Confidence 556677766 7899999999999999998754
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.48 E-value=2.3e-13 Score=132.06 Aligned_cols=100 Identities=17% Similarity=0.277 Sum_probs=86.0
Q ss_pred CCCCEEEEEcCccCcccc----cCCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeecCCCCCCCCCccEEEehhh
Q 016157 121 PSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISIAV 188 (394)
Q Consensus 121 ~~g~~VLDvGCG~G~~l~----~~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~lp~~~~~fD~Vi~~~v 188 (394)
.++.+|||||||+|.++. ..++.+++|+|++ .+++.|+++ +++++.+|+.+.+++.+ ||+|++..+
T Consensus 164 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~-~D~v~~~~~ 241 (335)
T 2r3s_A 164 IEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWA-SVLEVAKENARIQGVASRYHTIAGSAFEVDYGND-YDLVLLPNF 241 (335)
T ss_dssp CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECH-HHHHHHHHHHHHHTCGGGEEEEESCTTTSCCCSC-EEEEEEESC
T ss_pred CCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecH-HHHHHHHHHHHhcCCCcceEEEecccccCCCCCC-CcEEEEcch
Confidence 567899999999999753 3578899999999 999999875 48999999998777554 999999999
Q ss_pred hhhcCChhHHHHHHHHHHhccccCcEEEEEEcCcc
Q 016157 189 LHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVE 223 (394)
Q Consensus 189 l~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~~ 223 (394)
+||++++. ...+|+++.++|||||++++..+...
T Consensus 242 l~~~~~~~-~~~~l~~~~~~L~pgG~l~i~e~~~~ 275 (335)
T 2r3s_A 242 LHHFDVAT-CEQLLRKIKTALAVEGKVIVFDFIPN 275 (335)
T ss_dssp GGGSCHHH-HHHHHHHHHHHEEEEEEEEEEECCCC
T ss_pred hccCCHHH-HHHHHHHHHHhCCCCcEEEEEeecCC
Confidence 99997644 68999999999999999999886543
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.1e-13 Score=147.38 Aligned_cols=100 Identities=19% Similarity=0.300 Sum_probs=86.3
Q ss_pred CCCCEEEEEcCccCcccc----cC-CCcEEEEEeCCHHHHHHHHHc-------------CCeEEEeecCCCCCCCCCccE
Q 016157 121 PSGSLVLDAGCGNGKYLG----LN-PDCFFVGCDISPSLIKICVDR-------------GHEVLVADAVNLPYRSDFGDA 182 (394)
Q Consensus 121 ~~g~~VLDvGCG~G~~l~----~~-~~~~v~gvD~S~~~l~~a~~~-------------~i~~~~~D~~~lp~~~~~fD~ 182 (394)
.++.+|||||||+|.++. .. +...|+|+|+|+.|++.|+++ +++++++|+.++++.+++||+
T Consensus 720 ~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~dLp~~d~sFDl 799 (950)
T 3htx_A 720 SSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSILEFDSRLHDVDI 799 (950)
T ss_dssp SCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTTSCCTTSCSCCE
T ss_pred cCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECchHhCCcccCCeeE
Confidence 367899999999999753 22 347999999999999999871 478999999999998899999
Q ss_pred EEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCc
Q 016157 183 AISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAV 222 (394)
Q Consensus 183 Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~ 222 (394)
|++..+++|++++. ...+++++.++|||| .+++.++..
T Consensus 800 VV~~eVLeHL~dp~-l~~~L~eI~RvLKPG-~LIISTPN~ 837 (950)
T 3htx_A 800 GTCLEVIEHMEEDQ-ACEFGEKVLSLFHPK-LLIVSTPNY 837 (950)
T ss_dssp EEEESCGGGSCHHH-HHHHHHHHHHTTCCS-EEEEEECBG
T ss_pred EEEeCchhhCChHH-HHHHHHHHHHHcCCC-EEEEEecCc
Confidence 99999999998744 567999999999999 888887654
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=6.9e-13 Score=131.21 Aligned_cols=99 Identities=16% Similarity=0.190 Sum_probs=84.8
Q ss_pred CCCCCEEEEEcCccCcccc----cCCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeecCCCCCCCCCccEEEehh
Q 016157 120 LPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISIA 187 (394)
Q Consensus 120 l~~g~~VLDvGCG~G~~l~----~~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~lp~~~~~fD~Vi~~~ 187 (394)
+.++.+|||||||+|.++. ..++..++++|+ +.+++.|+++ +++++.+|+. .+++. .||+|++..
T Consensus 200 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~l~~~v~~~~~d~~-~~~p~-~~D~v~~~~ 276 (369)
T 3gwz_A 200 FSGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLER-PPVAEEARELLTGRGLADRCEILPGDFF-ETIPD-GADVYLIKH 276 (369)
T ss_dssp CTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTT-TCCCS-SCSEEEEES
T ss_pred CccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcC-HHHHHHHHHhhhhcCcCCceEEeccCCC-CCCCC-CceEEEhhh
Confidence 4567899999999999753 468889999999 9999999874 4899999998 45555 899999999
Q ss_pred hhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCc
Q 016157 188 VLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAV 222 (394)
Q Consensus 188 vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~ 222 (394)
++|+++++. ..++|+++.++|||||+++|..+..
T Consensus 277 vlh~~~d~~-~~~~L~~~~~~L~pgG~l~i~e~~~ 310 (369)
T 3gwz_A 277 VLHDWDDDD-VVRILRRIATAMKPDSRLLVIDNLI 310 (369)
T ss_dssp CGGGSCHHH-HHHHHHHHHTTCCTTCEEEEEEEBC
T ss_pred hhccCCHHH-HHHHHHHHHHHcCCCCEEEEEEecc
Confidence 999998744 5689999999999999999987644
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.3e-13 Score=129.83 Aligned_cols=103 Identities=15% Similarity=0.216 Sum_probs=85.1
Q ss_pred CCCCCCEEEEEcCccCcccc----c-CCCcEEEEEeCCHH------HHHHHHHc--------CCeEEEee---cCCCCCC
Q 016157 119 SLPSGSLVLDAGCGNGKYLG----L-NPDCFFVGCDISPS------LIKICVDR--------GHEVLVAD---AVNLPYR 176 (394)
Q Consensus 119 ~l~~g~~VLDvGCG~G~~l~----~-~~~~~v~gvD~S~~------~l~~a~~~--------~i~~~~~D---~~~lp~~ 176 (394)
.+.++.+|||||||+|.++. . .+...++|+|+|+. +++.|+++ +++++.+| ...+|+.
T Consensus 40 ~~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 119 (275)
T 3bkx_A 40 QVKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNLSDDLGPIA 119 (275)
T ss_dssp TCCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCCTTTCCGGGT
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECChhhhccCCCC
Confidence 35788999999999999753 2 35589999999997 89988875 47889998 4566777
Q ss_pred CCCccEEEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCccc
Q 016157 177 SDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQ 224 (394)
Q Consensus 177 ~~~fD~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~~~ 224 (394)
+++||+|++..+++|+++ +..+++.+.++++|||++++..+....
T Consensus 120 ~~~fD~v~~~~~l~~~~~---~~~~~~~~~~l~~~gG~l~~~~~~~~~ 164 (275)
T 3bkx_A 120 DQHFDRVVLAHSLWYFAS---ANALALLFKNMAAVCDHVDVAEWSMQP 164 (275)
T ss_dssp TCCCSEEEEESCGGGSSC---HHHHHHHHHHHTTTCSEEEEEEECSSC
T ss_pred CCCEEEEEEccchhhCCC---HHHHHHHHHHHhCCCCEEEEEEecCCC
Confidence 899999999999999998 556777777777789999999987654
|
| >1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=1.7e-13 Score=130.58 Aligned_cols=96 Identities=14% Similarity=0.134 Sum_probs=79.4
Q ss_pred CCCEEEEEcCccCcc----c----ccCC----CcEEEEEeCCHHHHHHHHHc----------------------------
Q 016157 122 SGSLVLDAGCGNGKY----L----GLNP----DCFFVGCDISPSLIKICVDR---------------------------- 161 (394)
Q Consensus 122 ~g~~VLDvGCG~G~~----l----~~~~----~~~v~gvD~S~~~l~~a~~~---------------------------- 161 (394)
++.+|||+|||||.. + ...+ +..|+|+|+|+.|++.|++.
T Consensus 105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~ 184 (274)
T 1af7_A 105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG 184 (274)
T ss_dssp SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence 457999999999972 1 1112 57999999999999999874
Q ss_pred ----------CCeEEEeecCCCCCC-CCCccEEEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEE
Q 016157 162 ----------GHEVLVADAVNLPYR-SDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLIT 218 (394)
Q Consensus 162 ----------~i~~~~~D~~~lp~~-~~~fD~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~ 218 (394)
.+.|.++|+.+.|++ .+.||+|+|..+++|+.++. ..+++++++++|||||.|++.
T Consensus 185 ~~~v~~~lr~~V~F~~~dl~~~~~~~~~~fDlI~crnvliyf~~~~-~~~vl~~~~~~L~pgG~L~lg 251 (274)
T 1af7_A 185 LVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTT-QEDILRRFVPLLKPDGLLFAG 251 (274)
T ss_dssp EEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHH-HHHHHHHHGGGEEEEEEEEEC
T ss_pred ceeechhhcccCeEEecccCCCCCCcCCCeeEEEECCchHhCCHHH-HHHHHHHHHHHhCCCcEEEEE
Confidence 267888999887665 57899999999999997644 689999999999999999874
|
| >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 | Back alignment and structure |
|---|
Probab=99.43 E-value=3.1e-13 Score=123.52 Aligned_cols=94 Identities=16% Similarity=0.122 Sum_probs=72.4
Q ss_pred CCCCCEEEEEcCccCcccc----cCCCcEEEEEeCCHHHH----HHHHHc-CCeEEEeecCCC----CCCCCCccEEEeh
Q 016157 120 LPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLI----KICVDR-GHEVLVADAVNL----PYRSDFGDAAISI 186 (394)
Q Consensus 120 l~~g~~VLDvGCG~G~~l~----~~~~~~v~gvD~S~~~l----~~a~~~-~i~~~~~D~~~l----p~~~~~fD~Vi~~ 186 (394)
+++|.+|||+|||+|.++. ..+...|+|+|+|+.|+ +.|+++ ++.++.+|+... ++. ++||+|++.
T Consensus 55 ~~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~-~~fD~V~~~ 133 (210)
T 1nt2_A 55 LRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIV-EKVDLIYQD 133 (210)
T ss_dssp CCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTC-CCEEEEEEC
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcCCCeEEEEcCCCCchhhcccc-cceeEEEEe
Confidence 5688999999999999753 23456999999999865 445444 678888998773 444 789999997
Q ss_pred hhhhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 016157 187 AVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 187 ~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~ 219 (394)
. ........+++++.++|||||+|++..
T Consensus 134 ~-----~~~~~~~~~l~~~~r~LkpgG~l~i~~ 161 (210)
T 1nt2_A 134 I-----AQKNQIEILKANAEFFLKEKGEVVIMV 161 (210)
T ss_dssp C-----CSTTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred c-----cChhHHHHHHHHHHHHhCCCCEEEEEE
Confidence 2 222324567999999999999999985
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.42 E-value=3e-13 Score=118.57 Aligned_cols=97 Identities=15% Similarity=0.081 Sum_probs=78.3
Q ss_pred CCCCCCEEEEEcCccCcccc----cCCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeecCC-CCCCCCCccEEEe
Q 016157 119 SLPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVN-LPYRSDFGDAAIS 185 (394)
Q Consensus 119 ~l~~g~~VLDvGCG~G~~l~----~~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~-lp~~~~~fD~Vi~ 185 (394)
.+.++.+|||+|||+|.++. ..++..++|+|+|+.+++.|+++ ++ ++.+|+.+ ++...++||+|++
T Consensus 22 ~~~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~~~~~~~~~~~D~i~~ 100 (178)
T 3hm2_A 22 APKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRI-AVQQGAPRAFDDVPDNPDVIFI 100 (178)
T ss_dssp CCCTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCTTGGGGGCCSCCSEEEE
T ss_pred cccCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecchHhhhhccCCCCCEEEE
Confidence 45678899999999999743 34678999999999999999876 34 77788754 3332388999999
Q ss_pred hhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCcc
Q 016157 186 IAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVE 223 (394)
Q Consensus 186 ~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~~ 223 (394)
..+++| ..+++++.++|||||++++.....+
T Consensus 101 ~~~~~~-------~~~l~~~~~~L~~gG~l~~~~~~~~ 131 (178)
T 3hm2_A 101 GGGLTA-------PGVFAAAWKRLPVGGRLVANAVTVE 131 (178)
T ss_dssp CC-TTC-------TTHHHHHHHTCCTTCEEEEEECSHH
T ss_pred CCcccH-------HHHHHHHHHhcCCCCEEEEEeeccc
Confidence 999887 3689999999999999999887654
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.42 E-value=1.1e-12 Score=118.29 Aligned_cols=98 Identities=14% Similarity=0.109 Sum_probs=82.4
Q ss_pred CCCCCCEEEEEcCccCcccc----cCCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeecCCCCCCCCCccEEEehh
Q 016157 119 SLPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFGDAAISIA 187 (394)
Q Consensus 119 ~l~~g~~VLDvGCG~G~~l~----~~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~lp~~~~~fD~Vi~~~ 187 (394)
.+.++.+|||+|||+|.++. ..+...++|+|+|+.+++.|+++ +++++.+|+.+.....+.||+|++..
T Consensus 37 ~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~i~~~~ 116 (204)
T 3e05_A 37 RLQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEGLDDLPDPDRVFIGG 116 (204)
T ss_dssp TCCTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTTCTTSCCCSEEEESC
T ss_pred CCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhhhhcCCCCCEEEECC
Confidence 45678899999999999743 35678999999999999999875 57899999976544447899999988
Q ss_pred hhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCc
Q 016157 188 VLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAV 222 (394)
Q Consensus 188 vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~ 222 (394)
+++ . ...+++++.++|||||++++.....
T Consensus 117 ~~~---~---~~~~l~~~~~~LkpgG~l~~~~~~~ 145 (204)
T 3e05_A 117 SGG---M---LEEIIDAVDRRLKSEGVIVLNAVTL 145 (204)
T ss_dssp CTT---C---HHHHHHHHHHHCCTTCEEEEEECBH
T ss_pred CCc---C---HHHHHHHHHHhcCCCeEEEEEeccc
Confidence 775 3 6899999999999999999987654
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=4.1e-13 Score=133.76 Aligned_cols=135 Identities=13% Similarity=0.137 Sum_probs=97.5
Q ss_pred hHHHHHHHHHHHHhhcccccccc-ccc----------hHHHHHHHc--CCCCCCEEEEEcCccCcccc----cCCCcEEE
Q 016157 84 PELEKKYVHRVYDAIAPHFSSTR-FAK----------WPKVATFLN--SLPSGSLVLDAGCGNGKYLG----LNPDCFFV 146 (394)
Q Consensus 84 ~~~~~~~v~~~Yd~~a~~y~~~~-~~~----------~~~l~~~l~--~l~~g~~VLDvGCG~G~~l~----~~~~~~v~ 146 (394)
...-..-+.++|++.....+..+ +.. ...+..++. .+.++.+|||||||+|..+. ..+...++
T Consensus 122 ~~~~~~Il~~~Y~r~V~~~~~L~~Ye~Fs~~vYGEt~~~~i~~il~~l~l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVv 201 (438)
T 3uwp_A 122 TGLLRHILQQVYNHSVTDPEKLNNYEPFSPEVYGETSFDLVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHY 201 (438)
T ss_dssp HHHHHHHHHHHHHHHCSCGGGSCCCSSSCGGGGGGTHHHHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHHHCCCSEEE
T ss_pred HHHHHHHHHHHHhhcCCCHHHhcCcccCCCcccCCCCHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEE
Confidence 45566778888997665433322 221 122333333 46789999999999999743 23334699
Q ss_pred EEeCCHHHHHHHHHc----------------CCeEEEeecCCCCCCC--CCccEEEehhhhhhcCChhHHHHHHHHHHhc
Q 016157 147 GCDISPSLIKICVDR----------------GHEVLVADAVNLPYRS--DFGDAAISIAVLHHLSTESRRKKAIEELVRV 208 (394)
Q Consensus 147 gvD~S~~~l~~a~~~----------------~i~~~~~D~~~lp~~~--~~fD~Vi~~~vl~hl~~~~~~~~~L~ei~r~ 208 (394)
|||+|+.+++.|++. +++++++|+.++|+.+ ..||+|+++.+++ .++ ....|.++.++
T Consensus 202 GIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~GD~~~lp~~d~~~~aDVVf~Nn~~F-~pd---l~~aL~Ei~Rv 277 (438)
T 3uwp_A 202 GVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSEEWRERIANTSVIFVNNFAF-GPE---VDHQLKERFAN 277 (438)
T ss_dssp EEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEECCTTSHHHHHHHHTCSEEEECCTTC-CHH---HHHHHHHHHTT
T ss_pred EEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEECcccCCccccccCCccEEEEccccc-Cch---HHHHHHHHHHc
Confidence 999999999888751 4789999999988754 4799999987653 222 78889999999
Q ss_pred cccCcEEEEEEcCc
Q 016157 209 VKKGSLVLITVWAV 222 (394)
Q Consensus 209 LkpGG~lli~~~~~ 222 (394)
|||||+|++.....
T Consensus 278 LKPGGrIVssE~f~ 291 (438)
T 3uwp_A 278 MKEGGRIVSSKPFA 291 (438)
T ss_dssp SCTTCEEEESSCSS
T ss_pred CCCCcEEEEeeccc
Confidence 99999999885433
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.42 E-value=9.6e-13 Score=127.89 Aligned_cols=98 Identities=13% Similarity=0.179 Sum_probs=83.5
Q ss_pred CCCCCEEEEEcCccCcccc----cCCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeecCCCCCCCCCccEEEehh
Q 016157 120 LPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISIA 187 (394)
Q Consensus 120 l~~g~~VLDvGCG~G~~l~----~~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~lp~~~~~fD~Vi~~~ 187 (394)
+.+ .+|||||||+|.++. ..++..++++|+ +.+++.|+++ +++++.+|+.+ +++ +.||+|++..
T Consensus 166 ~~~-~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~-~~~D~v~~~~ 241 (334)
T 2ip2_A 166 FRG-RSFVDVGGGSGELTKAILQAEPSARGVMLDR-EGSLGVARDNLSSLLAGERVSLVGGDMLQ-EVP-SNGDIYLLSR 241 (334)
T ss_dssp CTT-CEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-TTCTHHHHHHTHHHHHTTSEEEEESCTTT-CCC-SSCSEEEEES
T ss_pred CCC-CEEEEeCCCchHHHHHHHHHCCCCEEEEeCc-HHHHHHHHHHHhhcCCCCcEEEecCCCCC-CCC-CCCCEEEEch
Confidence 344 899999999999743 367889999999 9999998875 48999999987 554 6799999999
Q ss_pred hhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCc
Q 016157 188 VLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAV 222 (394)
Q Consensus 188 vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~ 222 (394)
++||+++.. ...+|+++.++|||||++++..+..
T Consensus 242 vl~~~~~~~-~~~~l~~~~~~L~pgG~l~i~e~~~ 275 (334)
T 2ip2_A 242 IIGDLDEAA-SLRLLGNCREAMAGDGRVVVIERTI 275 (334)
T ss_dssp CGGGCCHHH-HHHHHHHHHHHSCTTCEEEEEECCB
T ss_pred hccCCCHHH-HHHHHHHHHHhcCCCCEEEEEEecc
Confidence 999997644 5699999999999999999997654
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=9.9e-14 Score=120.48 Aligned_cols=109 Identities=18% Similarity=0.199 Sum_probs=86.3
Q ss_pred HHHHHHcCCCCCCEEEEEcCccCcccc----c-CCCcEEEEEeCCHHHHHHHHHcCCeEEEeecCCCC--------CCCC
Q 016157 112 KVATFLNSLPSGSLVLDAGCGNGKYLG----L-NPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLP--------YRSD 178 (394)
Q Consensus 112 ~l~~~l~~l~~g~~VLDvGCG~G~~l~----~-~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~lp--------~~~~ 178 (394)
.+...+..+.++.+|||+|||+|.++. . .++..++|+|+++ +++. .+++++.+|+.+.+ ++++
T Consensus 12 ~~~~~~~~~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~~---~~~~~~~~d~~~~~~~~~~~~~~~~~ 87 (180)
T 1ej0_A 12 EIQQSDKLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDPI---VGVDFLQGDFRDELVMKALLERVGDS 87 (180)
T ss_dssp HHHHHHCCCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCCC---TTEEEEESCTTSHHHHHHHHHHHTTC
T ss_pred HHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-cccc---CcEEEEEcccccchhhhhhhccCCCC
Confidence 334444456788999999999999753 2 4568999999999 7654 46889999999876 6678
Q ss_pred CccEEEehhhhhhcCChhH--------HHHHHHHHHhccccCcEEEEEEcCccc
Q 016157 179 FGDAAISIAVLHHLSTESR--------RKKAIEELVRVVKKGSLVLITVWAVEQ 224 (394)
Q Consensus 179 ~fD~Vi~~~vl~hl~~~~~--------~~~~L~ei~r~LkpGG~lli~~~~~~~ 224 (394)
+||+|++..+++++..... ...+++++.++|||||.+++.++..+.
T Consensus 88 ~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~ 141 (180)
T 1ej0_A 88 KVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGEG 141 (180)
T ss_dssp CEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESSTT
T ss_pred ceeEEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEecCCc
Confidence 9999999988887765310 168999999999999999998876543
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.41 E-value=2.8e-13 Score=124.48 Aligned_cols=88 Identities=23% Similarity=0.282 Sum_probs=76.5
Q ss_pred CCCCCEEEEEcCccCccccc--CCCcEEEEEeCCHHHHHHHHHc--CCeEEEeec-CCCCCC-CCCccEEEehhhhhhcC
Q 016157 120 LPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR--GHEVLVADA-VNLPYR-SDFGDAAISIAVLHHLS 193 (394)
Q Consensus 120 l~~g~~VLDvGCG~G~~l~~--~~~~~v~gvD~S~~~l~~a~~~--~i~~~~~D~-~~lp~~-~~~fD~Vi~~~vl~hl~ 193 (394)
++++.+|||||||+|.++.. ..+..|+|+|+|+.+++.|+++ +++++++|+ ..+|+. +++||+|++. .
T Consensus 46 ~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~~fD~v~~~------~ 119 (226)
T 3m33_A 46 LTPQTRVLEAGCGHGPDAARFGPQAARWAAYDFSPELLKLARANAPHADVYEWNGKGELPAGLGAPFGLIVSR------R 119 (226)
T ss_dssp CCTTCEEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHCTTSEEEECCSCSSCCTTCCCCEEEEEEE------S
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHhCCCceEEEcchhhccCCcCCCCEEEEEeC------C
Confidence 57889999999999997532 2367999999999999999987 789999999 568887 8899999997 2
Q ss_pred ChhHHHHHHHHHHhccccCcEEE
Q 016157 194 TESRRKKAIEELVRVVKKGSLVL 216 (394)
Q Consensus 194 ~~~~~~~~L~ei~r~LkpGG~ll 216 (394)
+ +..+|+++.++|||||+++
T Consensus 120 ~---~~~~l~~~~~~LkpgG~l~ 139 (226)
T 3m33_A 120 G---PTSVILRLPELAAPDAHFL 139 (226)
T ss_dssp C---CSGGGGGHHHHEEEEEEEE
T ss_pred C---HHHHHHHHHHHcCCCcEEE
Confidence 3 5688999999999999999
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 | Back alignment and structure |
|---|
Probab=99.41 E-value=4.6e-13 Score=118.36 Aligned_cols=101 Identities=17% Similarity=0.160 Sum_probs=83.0
Q ss_pred CCCCCEEEEEcCccCccccc--CCCcEEEEEeCCHHHHHHHHHc-------C--CeEEEeecCCCCCCCCCccEEEehhh
Q 016157 120 LPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR-------G--HEVLVADAVNLPYRSDFGDAAISIAV 188 (394)
Q Consensus 120 l~~g~~VLDvGCG~G~~l~~--~~~~~v~gvD~S~~~l~~a~~~-------~--i~~~~~D~~~lp~~~~~fD~Vi~~~v 188 (394)
..++.+|||+|||+|.++.. ..+..++|+|+++.+++.|+++ + ++++.+|+.+. +.+++||+|++..+
T Consensus 50 ~~~~~~vLdiG~G~G~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~D~v~~~~~ 128 (194)
T 1dus_A 50 VDKDDDILDLGCGYGVIGIALADEVKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYEN-VKDRKYNKIITNPP 128 (194)
T ss_dssp CCTTCEEEEETCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTT-CTTSCEEEEEECCC
T ss_pred cCCCCeEEEeCCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhcc-cccCCceEEEECCC
Confidence 45788999999999987431 2277999999999999999876 2 78999999873 44678999999988
Q ss_pred hhhcCChhHHHHHHHHHHhccccCcEEEEEEcCcc
Q 016157 189 LHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVE 223 (394)
Q Consensus 189 l~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~~ 223 (394)
++|. ......+++++.++|||||.+++..+...
T Consensus 129 ~~~~--~~~~~~~l~~~~~~L~~gG~l~~~~~~~~ 161 (194)
T 1dus_A 129 IRAG--KEVLHRIIEEGKELLKDNGEIWVVIQTKQ 161 (194)
T ss_dssp STTC--HHHHHHHHHHHHHHEEEEEEEEEEEESTH
T ss_pred cccc--hhHHHHHHHHHHHHcCCCCEEEEEECCCC
Confidence 8762 22268999999999999999999988753
|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.41 E-value=2.6e-13 Score=121.11 Aligned_cols=100 Identities=11% Similarity=0.041 Sum_probs=82.0
Q ss_pred CCCCEEEEEcCccCcccc---cCCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeecCCCC--CCCCCccEEEehhh
Q 016157 121 PSGSLVLDAGCGNGKYLG---LNPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLP--YRSDFGDAAISIAV 188 (394)
Q Consensus 121 ~~g~~VLDvGCG~G~~l~---~~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~lp--~~~~~fD~Vi~~~v 188 (394)
.++.+|||+|||+|.++. ..+...|+|+|+|+.|++.|+++ +++++++|+.+++ +.+++||+|++...
T Consensus 43 ~~~~~vLDlgcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~i~~~~p 122 (189)
T 3p9n_A 43 LTGLAVLDLYAGSGALGLEALSRGAASVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVVAAGTTSPVDLVLADPP 122 (189)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHTTCSEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHHHHCCSSCCSEEEECCC
T ss_pred CCCCEEEEeCCCcCHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHHhhccCCCccEEEECCC
Confidence 467899999999999743 23445899999999999999886 4789999998864 34689999999988
Q ss_pred hhhcCChhHHHHHHHHHHh--ccccCcEEEEEEcCc
Q 016157 189 LHHLSTESRRKKAIEELVR--VVKKGSLVLITVWAV 222 (394)
Q Consensus 189 l~hl~~~~~~~~~L~ei~r--~LkpGG~lli~~~~~ 222 (394)
+++.. +....+++++.+ +|||||++++.....
T Consensus 123 ~~~~~--~~~~~~l~~~~~~~~L~pgG~l~~~~~~~ 156 (189)
T 3p9n_A 123 YNVDS--ADVDAILAALGTNGWTREGTVAVVERATT 156 (189)
T ss_dssp TTSCH--HHHHHHHHHHHHSSSCCTTCEEEEEEETT
T ss_pred CCcch--hhHHHHHHHHHhcCccCCCeEEEEEecCC
Confidence 77641 227889999999 999999999987654
|
| >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=8.3e-14 Score=128.13 Aligned_cols=99 Identities=15% Similarity=0.173 Sum_probs=78.8
Q ss_pred CCCEEEEEcCccCcccc----cCCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeecCCC-C--CCCCCccEEEehh
Q 016157 122 SGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNL-P--YRSDFGDAAISIA 187 (394)
Q Consensus 122 ~g~~VLDvGCG~G~~l~----~~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~l-p--~~~~~fD~Vi~~~ 187 (394)
++.+|||||||+|.++. ..++..|+|+|+|+.+++.|+++ ++.++++|+.++ + +++++||.|++.+
T Consensus 34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l~~~~~~~~~d~v~~~~ 113 (218)
T 3dxy_A 34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEVLHKMIPDNSLRMVQLFF 113 (218)
T ss_dssp CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHHHHHSCTTCEEEEEEES
T ss_pred CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHcCCCChheEEEeC
Confidence 56799999999999753 36788999999999999998876 578999999874 3 6789999999875
Q ss_pred hhhhcCChhH-----HHHHHHHHHhccccCcEEEEEEc
Q 016157 188 VLHHLSTESR-----RKKAIEELVRVVKKGSLVLITVW 220 (394)
Q Consensus 188 vl~hl~~~~~-----~~~~L~ei~r~LkpGG~lli~~~ 220 (394)
...+...... ...+++++.++|||||.|++.+-
T Consensus 114 ~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~td 151 (218)
T 3dxy_A 114 PDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMATD 151 (218)
T ss_dssp CCCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEES
T ss_pred CCCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEeC
Confidence 4433222110 12599999999999999999873
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=99.41 E-value=3.1e-13 Score=121.00 Aligned_cols=105 Identities=17% Similarity=0.248 Sum_probs=84.0
Q ss_pred CCCCCCEEEEEcCccCccccc-----CCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeecCCCC-CCCCCccEEE
Q 016157 119 SLPSGSLVLDAGCGNGKYLGL-----NPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLP-YRSDFGDAAI 184 (394)
Q Consensus 119 ~l~~g~~VLDvGCG~G~~l~~-----~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~lp-~~~~~fD~Vi 184 (394)
.++++.+|||+|||+|.++.. .+...++|+|+++.+++.|+++ +++++++|+.+++ +.+++||+|+
T Consensus 19 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~ 98 (197)
T 3eey_A 19 FVKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDCPVKAVM 98 (197)
T ss_dssp HCCTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTCCSCEEEEE
T ss_pred cCCCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhccCCceEEE
Confidence 467889999999999986432 3567999999999999999876 4789999998876 5668999999
Q ss_pred ehhhh-----h-hcCChhHHHHHHHHHHhccccCcEEEEEEcCcc
Q 016157 185 SIAVL-----H-HLSTESRRKKAIEELVRVVKKGSLVLITVWAVE 223 (394)
Q Consensus 185 ~~~vl-----~-hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~~ 223 (394)
+...+ + +....+....+++++.++|||||++++..|...
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~ 143 (197)
T 3eey_A 99 FNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIYYGG 143 (197)
T ss_dssp EEESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEECCBT
T ss_pred EcCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEccCC
Confidence 98655 1 122222356899999999999999999987653
|
| >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.41 E-value=5e-13 Score=124.04 Aligned_cols=92 Identities=18% Similarity=0.064 Sum_probs=78.0
Q ss_pred CCCCEEEEEcCccCcccc----cCCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeecCCCCCC---CCCccEEEeh
Q 016157 121 PSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYR---SDFGDAAISI 186 (394)
Q Consensus 121 ~~g~~VLDvGCG~G~~l~----~~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~lp~~---~~~fD~Vi~~ 186 (394)
+++.+|||||||+|.++. ..++..|+|+|+|+.|++.|+++ +++++++|+.++++. +++||+|++.
T Consensus 69 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~ 148 (240)
T 1xdz_A 69 NQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTAR 148 (240)
T ss_dssp GGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEEE
T ss_pred CCCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEeccHHHhcccccccCCccEEEEe
Confidence 467899999999998632 25778999999999999999875 578999999887754 5789999997
Q ss_pred hhhhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 016157 187 AVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 187 ~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~ 219 (394)
.+ .+ +..+++++.++|||||++++..
T Consensus 149 ~~----~~---~~~~l~~~~~~LkpgG~l~~~~ 174 (240)
T 1xdz_A 149 AV----AR---LSVLSELCLPLVKKNGLFVALK 174 (240)
T ss_dssp CC----SC---HHHHHHHHGGGEEEEEEEEEEE
T ss_pred cc----CC---HHHHHHHHHHhcCCCCEEEEEe
Confidence 73 44 7899999999999999998864
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.40 E-value=5.4e-13 Score=121.48 Aligned_cols=100 Identities=17% Similarity=0.297 Sum_probs=80.7
Q ss_pred CCCCEEEEEcCccCcccc----cCCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeecCCCC--CCCCCccEEEehh
Q 016157 121 PSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLP--YRSDFGDAAISIA 187 (394)
Q Consensus 121 ~~g~~VLDvGCG~G~~l~----~~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~lp--~~~~~fD~Vi~~~ 187 (394)
.++.+|||||||+|.++. ..++..++|+|+|+.+++.|+++ ++.++++|+.+++ +++++||+|+++.
T Consensus 40 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~D~i~~~~ 119 (214)
T 1yzh_A 40 NDNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNF 119 (214)
T ss_dssp SCCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEES
T ss_pred CCCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCCCCCCEEEEEC
Confidence 457899999999999753 36788999999999999999875 5789999999887 7778999999986
Q ss_pred hhhhcCChh-----HHHHHHHHHHhccccCcEEEEEEc
Q 016157 188 VLHHLSTES-----RRKKAIEELVRVVKKGSLVLITVW 220 (394)
Q Consensus 188 vl~hl~~~~-----~~~~~L~ei~r~LkpGG~lli~~~ 220 (394)
...+..... ....+++++.++|||||.+++.+.
T Consensus 120 ~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 157 (214)
T 1yzh_A 120 SDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTD 157 (214)
T ss_dssp CCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEES
T ss_pred CCCccccchhhhccCCHHHHHHHHHHcCCCcEEEEEeC
Confidence 543322110 025799999999999999999763
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.40 E-value=5.5e-13 Score=131.66 Aligned_cols=100 Identities=19% Similarity=0.180 Sum_probs=85.9
Q ss_pred CCCCEEEEEcCccCcccc----cCCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeecCCC--CCCCCCccEEEeh
Q 016157 121 PSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNL--PYRSDFGDAAISI 186 (394)
Q Consensus 121 ~~g~~VLDvGCG~G~~l~----~~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~l--p~~~~~fD~Vi~~ 186 (394)
....+|||||||+|.++. ..|+..++++|+ +.+++.|+++ +++++.+|+.+. |++ +.||+|++.
T Consensus 178 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~p-~~~D~v~~~ 255 (363)
T 3dp7_A 178 HHPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDL-PQQLEMMRKQTAGLSGSERIHGHGANLLDRDVPFP-TGFDAVWMS 255 (363)
T ss_dssp GCCSEEEEESCTTCHHHHHHHHHSTTCEEEEEEC-HHHHHHHHHHHTTCTTGGGEEEEECCCCSSSCCCC-CCCSEEEEE
T ss_pred cCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeC-HHHHHHHHHHHHhcCcccceEEEEccccccCCCCC-CCcCEEEEe
Confidence 355799999999999753 368889999999 9999999875 489999999985 465 789999999
Q ss_pred hhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCcc
Q 016157 187 AVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVE 223 (394)
Q Consensus 187 ~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~~ 223 (394)
.++||+++++ ...+|+++.++|||||+++|..+..+
T Consensus 256 ~vlh~~~~~~-~~~~l~~~~~~L~pgG~l~i~e~~~~ 291 (363)
T 3dp7_A 256 QFLDCFSEEE-VISILTRVAQSIGKDSKVYIMETLWD 291 (363)
T ss_dssp SCSTTSCHHH-HHHHHHHHHHHCCTTCEEEEEECCTT
T ss_pred chhhhCCHHH-HHHHHHHHHHhcCCCcEEEEEeeccC
Confidence 9999998754 67899999999999999999876543
|
| >2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A | Back alignment and structure |
|---|
Probab=99.40 E-value=1.2e-13 Score=121.66 Aligned_cols=87 Identities=14% Similarity=0.100 Sum_probs=78.0
Q ss_pred CCCCCCEEEEEcCccCcccccCCCcEEEEEeCCHHHHHHHHHc---CCeEEEeecCCCCC---CCCCccEEEehhhhhhc
Q 016157 119 SLPSGSLVLDAGCGNGKYLGLNPDCFFVGCDISPSLIKICVDR---GHEVLVADAVNLPY---RSDFGDAAISIAVLHHL 192 (394)
Q Consensus 119 ~l~~g~~VLDvGCG~G~~l~~~~~~~v~gvD~S~~~l~~a~~~---~i~~~~~D~~~lp~---~~~~fD~Vi~~~vl~hl 192 (394)
.+++|.+|||||||. +++|+|+.|++.|+++ ++++.++|+.++++ ++++||+|++..++||+
T Consensus 9 g~~~g~~vL~~~~g~------------v~vD~s~~ml~~a~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~V~~~~~l~~~ 76 (176)
T 2ld4_A 9 GISAGQFVAVVWDKS------------SPVEALKGLVDKLQALTGNEGRVSVENIKQLLQSAHKESSFDIILSGLVPGST 76 (176)
T ss_dssp TCCTTSEEEEEECTT------------SCHHHHHHHHHHHHHHTTTTSEEEEEEGGGGGGGCCCSSCEEEEEECCSTTCC
T ss_pred CCCCCCEEEEecCCc------------eeeeCCHHHHHHHHHhcccCcEEEEechhcCccccCCCCCEeEEEECChhhhc
Confidence 367899999999996 2399999999999987 58999999999887 78999999999999999
Q ss_pred -CChhHHHHHHHHHHhccccCcEEEEEEc
Q 016157 193 -STESRRKKAIEELVRVVKKGSLVLITVW 220 (394)
Q Consensus 193 -~~~~~~~~~L~ei~r~LkpGG~lli~~~ 220 (394)
++ +..+|++++|+|||||+|++..+
T Consensus 77 ~~~---~~~~l~~~~r~LkpgG~l~~~~~ 102 (176)
T 2ld4_A 77 TLH---SAEILAEIARILRPGGCLFLKEP 102 (176)
T ss_dssp CCC---CHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccC---HHHHHHHHHHHCCCCEEEEEEcc
Confidence 76 68999999999999999999643
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=99.39 E-value=2.2e-13 Score=124.09 Aligned_cols=96 Identities=24% Similarity=0.279 Sum_probs=76.7
Q ss_pred CCCCCEEEEEcCccCcccc----cCCCcEEEEEeCCHHHHHHH----HHc-------CCeEEEeecCCCCCCCCCccEEE
Q 016157 120 LPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKIC----VDR-------GHEVLVADAVNLPYRSDFGDAAI 184 (394)
Q Consensus 120 l~~g~~VLDvGCG~G~~l~----~~~~~~v~gvD~S~~~l~~a----~~~-------~i~~~~~D~~~lp~~~~~fD~Vi 184 (394)
+.++.+|||||||+|.++. ..++..|+|+|+|+.|++.+ +++ +++++++|+.++|+.+++ |.|+
T Consensus 25 ~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~~-d~v~ 103 (218)
T 3mq2_A 25 SQYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAERLPPLSGV-GELH 103 (218)
T ss_dssp TTSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTTCCSCCCE-EEEE
T ss_pred ccCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhhCCCCCCC-CEEE
Confidence 5678899999999999753 36688999999999988853 221 578999999999987655 5554
Q ss_pred ---ehhhhh--hcCChhHHHHHHHHHHhccccCcEEEEEE
Q 016157 185 ---SIAVLH--HLSTESRRKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 185 ---~~~vl~--hl~~~~~~~~~L~ei~r~LkpGG~lli~~ 219 (394)
+...++ |+++ +..+|+++.++|||||++++..
T Consensus 104 ~~~~~~~~~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~ 140 (218)
T 3mq2_A 104 VLMPWGSLLRGVLGS---SPEMLRGMAAVCRPGASFLVAL 140 (218)
T ss_dssp EESCCHHHHHHHHTS---SSHHHHHHHHTEEEEEEEEEEE
T ss_pred EEccchhhhhhhhcc---HHHHHHHHHHHcCCCcEEEEEe
Confidence 444553 7777 5789999999999999999965
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=99.39 E-value=4.7e-13 Score=125.78 Aligned_cols=92 Identities=35% Similarity=0.440 Sum_probs=79.7
Q ss_pred CCCCEEEEEcCccCcccc----cCCCcEEEEEeCCHHHHHHHHHc--CCeEEEeecCCCCCCCCCccEEEehhhhhhcCC
Q 016157 121 PSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR--GHEVLVADAVNLPYRSDFGDAAISIAVLHHLST 194 (394)
Q Consensus 121 ~~g~~VLDvGCG~G~~l~----~~~~~~v~gvD~S~~~l~~a~~~--~i~~~~~D~~~lp~~~~~fD~Vi~~~vl~hl~~ 194 (394)
.++.+|||||||+|.++. ..++..++|+|+|+.+++.|+++ ++.+..+|+.++|+.+++||+|++..+.
T Consensus 84 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~~----- 158 (269)
T 1p91_A 84 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYAP----- 158 (269)
T ss_dssp TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEEEEESCC-----
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhCCCcEEEEcchhhCCCCCCceeEEEEeCCh-----
Confidence 578899999999999753 24578999999999999999987 5889999999999888999999986541
Q ss_pred hhHHHHHHHHHHhccccCcEEEEEEcCc
Q 016157 195 ESRRKKAIEELVRVVKKGSLVLITVWAV 222 (394)
Q Consensus 195 ~~~~~~~L~ei~r~LkpGG~lli~~~~~ 222 (394)
.+++++.++|||||++++.++..
T Consensus 159 -----~~l~~~~~~L~pgG~l~~~~~~~ 181 (269)
T 1p91_A 159 -----CKAEELARVVKPGGWVITATPGP 181 (269)
T ss_dssp -----CCHHHHHHHEEEEEEEEEEEECT
T ss_pred -----hhHHHHHHhcCCCcEEEEEEcCH
Confidence 35889999999999999998764
|
| >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.39 E-value=1.9e-13 Score=122.71 Aligned_cols=96 Identities=16% Similarity=0.185 Sum_probs=78.0
Q ss_pred CCCCCCEEEEEcCccCccc----ccCCCcEEEEEeCCHHHHHHHHHc----CC--eEEEeecCCCCCCCCCccEEEehhh
Q 016157 119 SLPSGSLVLDAGCGNGKYL----GLNPDCFFVGCDISPSLIKICVDR----GH--EVLVADAVNLPYRSDFGDAAISIAV 188 (394)
Q Consensus 119 ~l~~g~~VLDvGCG~G~~l----~~~~~~~v~gvD~S~~~l~~a~~~----~i--~~~~~D~~~lp~~~~~fD~Vi~~~v 188 (394)
.+++..+|||+|||+|.++ ...|+..|+|+|+|+.|++.++++ ++ .+..+|.... .+.+.||+|++..+
T Consensus 46 ~l~~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g~~~~v~~~d~~~~-~~~~~~DvVLa~k~ 124 (200)
T 3fzg_A 46 NIKHVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRFLNKESD-VYKGTYDVVFLLKM 124 (200)
T ss_dssp HSCCCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSCCSSEEEEECCHHH-HTTSEEEEEEEETC
T ss_pred hcCCCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCccEEEeccccc-CCCCCcChhhHhhH
Confidence 3577789999999999974 237788999999999999999987 33 4666777654 34688999999999
Q ss_pred hhhcCChhHHHHHHHHHHhccccCcEEEEE
Q 016157 189 LHHLSTESRRKKAIEELVRVVKKGSLVLIT 218 (394)
Q Consensus 189 l~hl~~~~~~~~~L~ei~r~LkpGG~lli~ 218 (394)
|||+.+ ++.++.++++.|||||.|+-.
T Consensus 125 LHlL~~---~~~al~~v~~~L~pggvfISf 151 (200)
T 3fzg_A 125 LPVLKQ---QDVNILDFLQLFHTQNFVISF 151 (200)
T ss_dssp HHHHHH---TTCCHHHHHHTCEEEEEEEEE
T ss_pred HHhhhh---hHHHHHHHHHHhCCCCEEEEe
Confidence 999932 567788999999999886554
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.39 E-value=7.3e-13 Score=123.08 Aligned_cols=98 Identities=13% Similarity=0.169 Sum_probs=79.7
Q ss_pred CCCCCCEEEEEcCccCccccc-----CCCcEEEEEeCCHHHHHHHHHc-----CCeEEEeecCC---CCCCCCCccEEEe
Q 016157 119 SLPSGSLVLDAGCGNGKYLGL-----NPDCFFVGCDISPSLIKICVDR-----GHEVLVADAVN---LPYRSDFGDAAIS 185 (394)
Q Consensus 119 ~l~~g~~VLDvGCG~G~~l~~-----~~~~~v~gvD~S~~~l~~a~~~-----~i~~~~~D~~~---lp~~~~~fD~Vi~ 185 (394)
.++||.+|||+|||+|.++.. .+...|+|+|+++.|++.++++ |+..+.+|... .++..+++|+|++
T Consensus 74 ~ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~~ni~~V~~d~~~p~~~~~~~~~vDvVf~ 153 (233)
T 4df3_A 74 PVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDRRNIFPILGDARFPEKYRHLVEGVDGLYA 153 (233)
T ss_dssp CCCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTCTTEEEEESCTTCGGGGTTTCCCEEEEEE
T ss_pred CCCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhhcCeeEEEEeccCccccccccceEEEEEE
Confidence 368999999999999997542 6888999999999999998876 67888888865 3456788999886
Q ss_pred hhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 016157 186 IAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 221 (394)
Q Consensus 186 ~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~ 221 (394)
. +.|.. ....++.++.++|||||++++....
T Consensus 154 d--~~~~~---~~~~~l~~~~r~LKpGG~lvI~ik~ 184 (233)
T 4df3_A 154 D--VAQPE---QAAIVVRNARFFLRDGGYMLMAIKA 184 (233)
T ss_dssp C--CCCTT---HHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred e--ccCCh---hHHHHHHHHHHhccCCCEEEEEEec
Confidence 4 23322 2678999999999999999998654
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.39 E-value=3.9e-13 Score=122.89 Aligned_cols=100 Identities=18% Similarity=0.280 Sum_probs=79.3
Q ss_pred CCCCEEEEEcCccCcccc----cCCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeecCCCC--CCCCCccEEEehh
Q 016157 121 PSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLP--YRSDFGDAAISIA 187 (394)
Q Consensus 121 ~~g~~VLDvGCG~G~~l~----~~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~lp--~~~~~fD~Vi~~~ 187 (394)
.++.+|||||||+|.++. ..++..++|+|+|+.+++.|+++ ++.++++|+.+++ +++++||.|++..
T Consensus 37 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~l~~~~~~~~~d~v~~~~ 116 (213)
T 2fca_A 37 NDNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNF 116 (213)
T ss_dssp SCCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEES
T ss_pred CCCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCcCCcCEEEEEC
Confidence 357799999999999753 36788999999999999999875 5789999999876 6778999998765
Q ss_pred hhhhcCChh--H---HHHHHHHHHhccccCcEEEEEEc
Q 016157 188 VLHHLSTES--R---RKKAIEELVRVVKKGSLVLITVW 220 (394)
Q Consensus 188 vl~hl~~~~--~---~~~~L~ei~r~LkpGG~lli~~~ 220 (394)
...+..... + ...+|+++.++|||||.|++.+.
T Consensus 117 ~~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~td 154 (213)
T 2fca_A 117 SDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTD 154 (213)
T ss_dssp CCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEES
T ss_pred CCCCcCccccccccCcHHHHHHHHHHcCCCCEEEEEeC
Confidence 432221100 0 25789999999999999999873
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=2.1e-13 Score=134.18 Aligned_cols=98 Identities=18% Similarity=0.120 Sum_probs=79.9
Q ss_pred CCCCCEEEEEcCccCcccc---cCCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeecCCCCCCCCCccEEEehhh
Q 016157 120 LPSGSLVLDAGCGNGKYLG---LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISIAV 188 (394)
Q Consensus 120 l~~g~~VLDvGCG~G~~l~---~~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~lp~~~~~fD~Vi~~~v 188 (394)
+.++.+|||||||+|.++. ..+...|+|+|+| +|++.|+++ .++++++|+.++++++++||+|++..+
T Consensus 64 ~~~~~~VLDvGcG~G~~~~~la~~g~~~v~gvD~s-~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iis~~~ 142 (349)
T 3q7e_A 64 LFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECS-SISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWM 142 (349)
T ss_dssp HHTTCEEEEESCTTSHHHHHHHHTTCSEEEEEECS-THHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCC
T ss_pred cCCCCEEEEEeccchHHHHHHHHCCCCEEEEECcH-HHHHHHHHHHHHcCCCCcEEEEECcHHHccCCCCceEEEEEccc
Confidence 4578899999999999753 2344599999999 599998875 279999999999988899999999776
Q ss_pred hhhcCChhHHHHHHHHHHhccccCcEEEEE
Q 016157 189 LHHLSTESRRKKAIEELVRVVKKGSLVLIT 218 (394)
Q Consensus 189 l~hl~~~~~~~~~L~ei~r~LkpGG~lli~ 218 (394)
.+++.....+..++.++.++|||||+++..
T Consensus 143 ~~~l~~~~~~~~~l~~~~r~LkpgG~li~~ 172 (349)
T 3q7e_A 143 GYCLFYESMLNTVLHARDKWLAPDGLIFPD 172 (349)
T ss_dssp BBTBTBTCCHHHHHHHHHHHEEEEEEEESC
T ss_pred cccccCchhHHHHHHHHHHhCCCCCEEccc
Confidence 555533333889999999999999998744
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=8.3e-13 Score=128.42 Aligned_cols=99 Identities=20% Similarity=0.185 Sum_probs=84.6
Q ss_pred CCCCEEEEEcCccCcccc----cCCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeecCCCCCCCCCccEEEehhh
Q 016157 121 PSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISIAV 188 (394)
Q Consensus 121 ~~g~~VLDvGCG~G~~l~----~~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~lp~~~~~fD~Vi~~~v 188 (394)
.++.+|||||||+|.++. ..|+..++++|+ +.+++.|+++ ++++..+|+. .+++. .||+|++..+
T Consensus 168 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~-~~~p~-~~D~v~~~~v 244 (332)
T 3i53_A 168 AALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDL-QGPASAAHRRFLDTGLSGRAQVVVGSFF-DPLPA-GAGGYVLSAV 244 (332)
T ss_dssp GGGSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTT-SCCCC-SCSEEEEESC
T ss_pred CCCCEEEEeCCChhHHHHHHHHHCCCCeEEEecC-HHHHHHHHHhhhhcCcCcCeEEecCCCC-CCCCC-CCcEEEEehh
Confidence 346799999999999753 368889999999 9999999864 4899999997 45544 8999999999
Q ss_pred hhhcCChhHHHHHHHHHHhccccCcEEEEEEcCcc
Q 016157 189 LHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVE 223 (394)
Q Consensus 189 l~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~~ 223 (394)
+||+++++ ..++|+++.++|||||+++|..+...
T Consensus 245 lh~~~~~~-~~~~l~~~~~~L~pgG~l~i~e~~~~ 278 (332)
T 3i53_A 245 LHDWDDLS-AVAILRRCAEAAGSGGVVLVIEAVAG 278 (332)
T ss_dssp GGGSCHHH-HHHHHHHHHHHHTTTCEEEEEECCCC
T ss_pred hccCCHHH-HHHHHHHHHHhcCCCCEEEEEeecCC
Confidence 99998754 68999999999999999999986554
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=6.6e-13 Score=130.18 Aligned_cols=97 Identities=21% Similarity=0.177 Sum_probs=78.1
Q ss_pred CCCCCCEEEEEcCccCcccc---cCCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeecCCCCCCCCCccEEEehh
Q 016157 119 SLPSGSLVLDAGCGNGKYLG---LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISIA 187 (394)
Q Consensus 119 ~l~~g~~VLDvGCG~G~~l~---~~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~lp~~~~~fD~Vi~~~ 187 (394)
.+.++.+|||||||+|.++. ......|+|+|+|+ |++.|+++ +++++.+|+.++++++++||+|++..
T Consensus 61 ~~~~~~~VLDiGcGtG~ls~~la~~g~~~v~gvD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~~ 139 (340)
T 2fyt_A 61 HIFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSE-ILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEW 139 (340)
T ss_dssp GGTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSCEEEEEECC
T ss_pred hhcCCCEEEEeeccCcHHHHHHHHcCCCEEEEEChHH-HHHHHHHHHHHcCCCCcEEEEEeeHHHhcCCCCcEEEEEEcC
Confidence 35678899999999999743 23334999999996 99998875 47899999999988888999999876
Q ss_pred hhhhcCChhHHHHHHHHHHhccccCcEEE
Q 016157 188 VLHHLSTESRRKKAIEELVRVVKKGSLVL 216 (394)
Q Consensus 188 vl~hl~~~~~~~~~L~ei~r~LkpGG~ll 216 (394)
+.+++.....+..+|.++.++|||||+++
T Consensus 140 ~~~~l~~~~~~~~~l~~~~~~LkpgG~li 168 (340)
T 2fyt_A 140 MGYFLLFESMLDSVLYAKNKYLAKGGSVY 168 (340)
T ss_dssp CBTTBTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred chhhccCHHHHHHHHHHHHhhcCCCcEEE
Confidence 43333333337889999999999999998
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=2e-12 Score=127.13 Aligned_cols=100 Identities=16% Similarity=0.213 Sum_probs=86.1
Q ss_pred CCCCCEEEEEcCccCcccc----cCCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeecCCCCCCCCCccEEEehh
Q 016157 120 LPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISIA 187 (394)
Q Consensus 120 l~~g~~VLDvGCG~G~~l~----~~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~lp~~~~~fD~Vi~~~ 187 (394)
+.++.+|||||||+|.++. ..++.+++|+|+ +.+++.|+++ +++++.+|+.+.++++. |+|++..
T Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~--D~v~~~~ 264 (359)
T 1x19_A 188 LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYPEA--DAVLFCR 264 (359)
T ss_dssp CTTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCTTTEEEEECCTTTSCCCCC--SEEEEES
T ss_pred CCCCCEEEEECCcccHHHHHHHHHCCCCeEEEEec-HHHHHHHHHHHHhcCCCCCEEEEeCccccCCCCCC--CEEEEec
Confidence 4677899999999999753 367889999999 9999999875 38999999998877543 9999999
Q ss_pred hhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCcc
Q 016157 188 VLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVE 223 (394)
Q Consensus 188 vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~~ 223 (394)
++||++++. ...+|+++.++|||||++++..+...
T Consensus 265 vlh~~~d~~-~~~~l~~~~~~L~pgG~l~i~e~~~~ 299 (359)
T 1x19_A 265 ILYSANEQL-STIMCKKAFDAMRSGGRLLILDMVID 299 (359)
T ss_dssp CGGGSCHHH-HHHHHHHHHTTCCTTCEEEEEEECCC
T ss_pred hhccCCHHH-HHHHHHHHHHhcCCCCEEEEEecccC
Confidence 999998644 78999999999999999999887654
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=7.1e-13 Score=131.21 Aligned_cols=99 Identities=19% Similarity=0.242 Sum_probs=85.0
Q ss_pred CCCCCEEEEEcCccCcccc----cCCCcEEEEEeCCHHHHHHHHHc-CCeEEEeecCCCCCCCCCccEEEehhhhhhcCC
Q 016157 120 LPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR-GHEVLVADAVNLPYRSDFGDAAISIAVLHHLST 194 (394)
Q Consensus 120 l~~g~~VLDvGCG~G~~l~----~~~~~~v~gvD~S~~~l~~a~~~-~i~~~~~D~~~lp~~~~~fD~Vi~~~vl~hl~~ 194 (394)
+.++.+|||||||+|.++. ..|+..++++|+ +.+++.|++. +++++.+|+.+ |++.+ |+|++..++||+++
T Consensus 201 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~~~-~~p~~--D~v~~~~vlh~~~~ 276 (368)
T 3reo_A 201 FEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDL-PHVIQDAPAFSGVEHLGGDMFD-GVPKG--DAIFIKWICHDWSD 276 (368)
T ss_dssp TTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCCTTEEEEECCTTT-CCCCC--SEEEEESCGGGBCH
T ss_pred ccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeh-HHHHHhhhhcCCCEEEecCCCC-CCCCC--CEEEEechhhcCCH
Confidence 4567899999999999753 468889999999 9999888765 79999999987 66654 99999999999987
Q ss_pred hhHHHHHHHHHHhccccCcEEEEEEcCcc
Q 016157 195 ESRRKKAIEELVRVVKKGSLVLITVWAVE 223 (394)
Q Consensus 195 ~~~~~~~L~ei~r~LkpGG~lli~~~~~~ 223 (394)
++ ..++|++++++|||||+++|..+..+
T Consensus 277 ~~-~~~~l~~~~~~L~pgG~l~i~e~~~~ 304 (368)
T 3reo_A 277 EH-CLKLLKNCYAALPDHGKVIVAEYILP 304 (368)
T ss_dssp HH-HHHHHHHHHHHSCTTCEEEEEECCCC
T ss_pred HH-HHHHHHHHHHHcCCCCEEEEEEeccC
Confidence 54 67899999999999999999987654
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.36 E-value=8.7e-13 Score=119.25 Aligned_cols=94 Identities=19% Similarity=0.134 Sum_probs=80.4
Q ss_pred CCCCCCEEEEEcCccCccccc--CCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeecCCCCCCCCCccEEEehhhh
Q 016157 119 SLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFGDAAISIAVL 189 (394)
Q Consensus 119 ~l~~g~~VLDvGCG~G~~l~~--~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~lp~~~~~fD~Vi~~~vl 189 (394)
.+.++.+|||||||+|.++.. ..+..|+|+|+|+.+++.|+++ +++++.+|+...+..+++||+|++..++
T Consensus 74 ~~~~~~~vLdiG~G~G~~~~~la~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~i~~~~~~ 153 (210)
T 3lbf_A 74 ELTPQSRVLEIGTGSGYQTAILAHLVQHVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGWQARAPFDAIIVTAAP 153 (210)
T ss_dssp TCCTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEEEEEESSBC
T ss_pred CCCCCCEEEEEcCCCCHHHHHHHHhCCEEEEEecCHHHHHHHHHHHHHcCCCceEEEECCcccCCccCCCccEEEEccch
Confidence 456788999999999997532 2267999999999999999876 4789999998877667899999999999
Q ss_pred hhcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 016157 190 HHLSTESRRKKAIEELVRVVKKGSLVLITVWA 221 (394)
Q Consensus 190 ~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~ 221 (394)
+|+++ ++.++|||||++++.+..
T Consensus 154 ~~~~~---------~~~~~L~pgG~lv~~~~~ 176 (210)
T 3lbf_A 154 PEIPT---------ALMTQLDEGGILVLPVGE 176 (210)
T ss_dssp SSCCT---------HHHHTEEEEEEEEEEECS
T ss_pred hhhhH---------HHHHhcccCcEEEEEEcC
Confidence 99875 478999999999999876
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=99.36 E-value=2.3e-12 Score=116.97 Aligned_cols=97 Identities=12% Similarity=0.052 Sum_probs=78.7
Q ss_pred CCCCCCEEEEEcCccCccccc--CCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeecCCCCCCCCCccEEEehhh
Q 016157 119 SLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISIAV 188 (394)
Q Consensus 119 ~l~~g~~VLDvGCG~G~~l~~--~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~lp~~~~~fD~Vi~~~v 188 (394)
.+.++.+|||+|||+|.++.. ..+..|+|+|+|+.+++.|+++ +++++.+|+.+.......||+|++...
T Consensus 52 ~~~~~~~vLDlGcG~G~~~~~la~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~D~v~~~~~ 131 (204)
T 3njr_A 52 APRRGELLWDIGGGSGSVSVEWCLAGGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALADLPLPEAVFIGGG 131 (204)
T ss_dssp CCCTTCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGTTSCCCSEEEECSC
T ss_pred CCCCCCEEEEecCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhcccCCCCCEEEECCc
Confidence 456788999999999987421 2278999999999999999876 478999999884333467999998774
Q ss_pred hhhcCChhHHHHHHHHHHhccccCcEEEEEEcCcc
Q 016157 189 LHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVE 223 (394)
Q Consensus 189 l~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~~ 223 (394)
+ + .. +++++.++|||||++++.....+
T Consensus 132 ~----~---~~-~l~~~~~~LkpgG~lv~~~~~~~ 158 (204)
T 3njr_A 132 G----S---QA-LYDRLWEWLAPGTRIVANAVTLE 158 (204)
T ss_dssp C----C---HH-HHHHHHHHSCTTCEEEEEECSHH
T ss_pred c----c---HH-HHHHHHHhcCCCcEEEEEecCcc
Confidence 3 2 55 99999999999999999987654
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=1e-12 Score=129.99 Aligned_cols=100 Identities=17% Similarity=0.196 Sum_probs=86.0
Q ss_pred CCCCCCEEEEEcCccCcccc----cCCCcEEEEEeCCHHHHHHHHHc-CCeEEEeecCCCCCCCCCccEEEehhhhhhcC
Q 016157 119 SLPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR-GHEVLVADAVNLPYRSDFGDAAISIAVLHHLS 193 (394)
Q Consensus 119 ~l~~g~~VLDvGCG~G~~l~----~~~~~~v~gvD~S~~~l~~a~~~-~i~~~~~D~~~lp~~~~~fD~Vi~~~vl~hl~ 193 (394)
.+.++.+|||||||+|.++. ..|+..++++|+ +.+++.|++. +++++.+|+.+ |++.+ |+|++..++||++
T Consensus 198 ~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~-~~p~~--D~v~~~~vlh~~~ 273 (364)
T 3p9c_A 198 GFEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDL-PHVISEAPQFPGVTHVGGDMFK-EVPSG--DTILMKWILHDWS 273 (364)
T ss_dssp TTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCCTTEEEEECCTTT-CCCCC--SEEEEESCGGGSC
T ss_pred cccCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecC-HHHHHhhhhcCCeEEEeCCcCC-CCCCC--CEEEehHHhccCC
Confidence 35677899999999999753 468889999999 8899888765 79999999988 77654 9999999999998
Q ss_pred ChhHHHHHHHHHHhccccCcEEEEEEcCcc
Q 016157 194 TESRRKKAIEELVRVVKKGSLVLITVWAVE 223 (394)
Q Consensus 194 ~~~~~~~~L~ei~r~LkpGG~lli~~~~~~ 223 (394)
+++ ..++|++++++|||||+++|..+..+
T Consensus 274 d~~-~~~~L~~~~~~L~pgG~l~i~e~~~~ 302 (364)
T 3p9c_A 274 DQH-CATLLKNCYDALPAHGKVVLVQCILP 302 (364)
T ss_dssp HHH-HHHHHHHHHHHSCTTCEEEEEECCBC
T ss_pred HHH-HHHHHHHHHHHcCCCCEEEEEEeccC
Confidence 754 68999999999999999999987654
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A | Back alignment and structure |
|---|
Probab=99.36 E-value=1.7e-12 Score=119.73 Aligned_cols=93 Identities=15% Similarity=0.211 Sum_probs=77.3
Q ss_pred CCCCCEEEEEcCccCcccc----cCCCcEEEEEeCCHHHHHHHHHc-----CCeEEEeecCC----CCCCCCCccEEEeh
Q 016157 120 LPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR-----GHEVLVADAVN----LPYRSDFGDAAISI 186 (394)
Q Consensus 120 l~~g~~VLDvGCG~G~~l~----~~~~~~v~gvD~S~~~l~~a~~~-----~i~~~~~D~~~----lp~~~~~fD~Vi~~ 186 (394)
+.++.+|||+|||+|.++. ..+...|+|+|+|+.+++.|+++ ++.++.+|+.. +++. ++||+|+
T Consensus 72 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~-~~~D~v~-- 148 (230)
T 1fbn_A 72 IKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIV-EKVDVIY-- 148 (230)
T ss_dssp CCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTS-CCEEEEE--
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcCCCeEEEECCCCCcccccccC-ccEEEEE--
Confidence 4578899999999999743 23457999999999999998775 57899999988 7765 7899999
Q ss_pred hhhhhcCChhHHHHHHHHHHhccccCcEEEEE
Q 016157 187 AVLHHLSTESRRKKAIEELVRVVKKGSLVLIT 218 (394)
Q Consensus 187 ~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~ 218 (394)
++++.......+++++.++|||||++++.
T Consensus 149 ---~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 177 (230)
T 1fbn_A 149 ---EDVAQPNQAEILIKNAKWFLKKGGYGMIA 177 (230)
T ss_dssp ---ECCCSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ---EecCChhHHHHHHHHHHHhCCCCcEEEEE
Confidence 55666443478899999999999999998
|
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.36 E-value=8.5e-13 Score=122.77 Aligned_cols=101 Identities=24% Similarity=0.328 Sum_probs=76.3
Q ss_pred CCCCEEEEEcCccCcccc----cCCCcEEEEEeCCHHHHHHHHHc-------------CCeEEEeecCC-CC--CCCCCc
Q 016157 121 PSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR-------------GHEVLVADAVN-LP--YRSDFG 180 (394)
Q Consensus 121 ~~g~~VLDvGCG~G~~l~----~~~~~~v~gvD~S~~~l~~a~~~-------------~i~~~~~D~~~-lp--~~~~~f 180 (394)
.++.+|||||||+|.++. ..++..++|+|+|+.|++.|+++ ++.++++|+.. ++ +++++|
T Consensus 45 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~~~ 124 (235)
T 3ckk_A 45 QAQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQL 124 (235)
T ss_dssp -CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTTCE
T ss_pred CCCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCcCe
Confidence 456799999999999743 36788999999999999988632 57899999987 66 778999
Q ss_pred cEEEehhhhhhcCCh--hHH---HHHHHHHHhccccCcEEEEEEcC
Q 016157 181 DAAISIAVLHHLSTE--SRR---KKAIEELVRVVKKGSLVLITVWA 221 (394)
Q Consensus 181 D~Vi~~~vl~hl~~~--~~~---~~~L~ei~r~LkpGG~lli~~~~ 221 (394)
|.|++.....|.... .++ ..+|+++.++|||||.|++.+..
T Consensus 125 D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~td~ 170 (235)
T 3ckk_A 125 TKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTITDV 170 (235)
T ss_dssp EEEEEESCC-----------CCCHHHHHHHHHHEEEEEEEEEEESC
T ss_pred eEEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEeCC
Confidence 999876543332211 001 47999999999999999998643
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=99.36 E-value=1e-12 Score=118.50 Aligned_cols=96 Identities=14% Similarity=0.038 Sum_probs=80.5
Q ss_pred CCCCCEEEEEcCccCcccc---cCCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeecCCCCCCCCCccEEEehhhh
Q 016157 120 LPSGSLVLDAGCGNGKYLG---LNPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFGDAAISIAVL 189 (394)
Q Consensus 120 l~~g~~VLDvGCG~G~~l~---~~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~lp~~~~~fD~Vi~~~vl 189 (394)
++++.+|||+|||+|.++. ..+...++|+|+|+.+++.|+++ +++++.+|+.+.+ +++||+|++..++
T Consensus 58 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~--~~~fD~i~~~~~~ 135 (205)
T 3grz_A 58 MVKPLTVADVGTGSGILAIAAHKLGAKSVLATDISDESMTAAEENAALNGIYDIALQKTSLLADV--DGKFDLIVANILA 135 (205)
T ss_dssp CSSCCEEEEETCTTSHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCCCEEEESSTTTTC--CSCEEEEEEESCH
T ss_pred ccCCCEEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEeccccccC--CCCceEEEECCcH
Confidence 4678899999999998753 24455999999999999999886 3889999998753 5899999999888
Q ss_pred hhcCChhHHHHHHHHHHhccccCcEEEEEEcCcc
Q 016157 190 HHLSTESRRKKAIEELVRVVKKGSLVLITVWAVE 223 (394)
Q Consensus 190 ~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~~ 223 (394)
+++ ..+++++.++|||||++++..+...
T Consensus 136 ~~~------~~~l~~~~~~L~~gG~l~~~~~~~~ 163 (205)
T 3grz_A 136 EIL------LDLIPQLDSHLNEDGQVIFSGIDYL 163 (205)
T ss_dssp HHH------HHHGGGSGGGEEEEEEEEEEEEEGG
T ss_pred HHH------HHHHHHHHHhcCCCCEEEEEecCcc
Confidence 764 6789999999999999999866543
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=1.6e-12 Score=128.22 Aligned_cols=97 Identities=23% Similarity=0.219 Sum_probs=82.7
Q ss_pred CCCCCEEEEEcCccCcccc----cCCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeecCCCCCCCCCccEEEehh
Q 016157 120 LPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISIA 187 (394)
Q Consensus 120 l~~g~~VLDvGCG~G~~l~----~~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~lp~~~~~fD~Vi~~~ 187 (394)
+.++.+|||||||+|.++. ..++..++++|+ +.+++.|+++ +++++.+|+.+ +++. .||+|++..
T Consensus 180 ~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~-~~D~v~~~~ 256 (374)
T 1qzz_A 180 WSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFK-PLPV-TADVVLLSF 256 (374)
T ss_dssp CTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTS-CCSC-CEEEEEEES
T ss_pred CCCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeC-HHHHHHHHHHHHhcCCCCceEEEeCCCCC-cCCC-CCCEEEEec
Confidence 4677899999999998753 367889999999 9999999875 58999999976 3433 499999999
Q ss_pred hhhhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 016157 188 VLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (394)
Q Consensus 188 vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~ 220 (394)
++||+++.. ...+|+++.++|||||++++..+
T Consensus 257 vl~~~~~~~-~~~~l~~~~~~L~pgG~l~i~e~ 288 (374)
T 1qzz_A 257 VLLNWSDED-ALTILRGCVRALEPGGRLLVLDR 288 (374)
T ss_dssp CGGGSCHHH-HHHHHHHHHHHEEEEEEEEEEEC
T ss_pred cccCCCHHH-HHHHHHHHHHhcCCCcEEEEEec
Confidence 999998743 46899999999999999999887
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.35 E-value=5.1e-13 Score=132.71 Aligned_cols=99 Identities=18% Similarity=0.102 Sum_probs=81.3
Q ss_pred CCCCCCEEEEEcCccCccccc--CCCc-EEEEEeCCHHHHHHHHHc--------CCeEEEeecCCCCCCCCCccEEEehh
Q 016157 119 SLPSGSLVLDAGCGNGKYLGL--NPDC-FFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISIA 187 (394)
Q Consensus 119 ~l~~g~~VLDvGCG~G~~l~~--~~~~-~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~lp~~~~~fD~Vi~~~ 187 (394)
.+.++.+|||||||+|.++.. ..+. +|+|+|+| .|++.|+++ .++++++|+.+++++ ++||+|++..
T Consensus 60 ~~~~~~~VLDlGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~Iv~~~ 137 (376)
T 3r0q_C 60 HHFEGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMADHARALVKANNLDHIVEVIEGSVEDISLP-EKVDVIISEW 137 (376)
T ss_dssp TTTTTCEEEEESCTTTHHHHHHHHTTCSEEEEEESS-TTHHHHHHHHHHTTCTTTEEEEESCGGGCCCS-SCEEEEEECC
T ss_pred ccCCCCEEEEeccCcCHHHHHHHhcCCCEEEEEccH-HHHHHHHHHHHHcCCCCeEEEEECchhhcCcC-CcceEEEEcC
Confidence 456789999999999987432 2244 99999999 999999876 279999999998876 8999999977
Q ss_pred hhhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 016157 188 VLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 188 vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~ 219 (394)
+.+++.....+..+++++.++|||||.+++..
T Consensus 138 ~~~~l~~e~~~~~~l~~~~~~LkpgG~li~~~ 169 (376)
T 3r0q_C 138 MGYFLLRESMFDSVISARDRWLKPTGVMYPSH 169 (376)
T ss_dssp CBTTBTTTCTHHHHHHHHHHHEEEEEEEESSE
T ss_pred hhhcccchHHHHHHHHHHHhhCCCCeEEEEec
Confidence 66666544447889999999999999998754
|
| >4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=3.8e-12 Score=125.27 Aligned_cols=99 Identities=23% Similarity=0.293 Sum_probs=84.6
Q ss_pred CCCCCEEEEEcCccCccc----ccCCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeecCCCCCCCCCccEEEehhh
Q 016157 120 LPSGSLVLDAGCGNGKYL----GLNPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFGDAAISIAV 188 (394)
Q Consensus 120 l~~g~~VLDvGCG~G~~l----~~~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~lp~~~~~fD~Vi~~~v 188 (394)
+.+..+|||||||+|.++ +..|+.+++..|+ +.+++.|+++ +++++.+|+...|.+ .+|++++..+
T Consensus 177 ~~~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dl-p~v~~~a~~~~~~~~~~rv~~~~gD~~~~~~~--~~D~~~~~~v 253 (353)
T 4a6d_A 177 LSVFPLMCDLGGGAGALAKECMSLYPGCKITVFDI-PEVVWTAKQHFSFQEEEQIDFQEGDFFKDPLP--EADLYILARV 253 (353)
T ss_dssp GGGCSEEEEETCTTSHHHHHHHHHCSSCEEEEEEC-HHHHHHHHHHSCC--CCSEEEEESCTTTSCCC--CCSEEEEESS
T ss_pred cccCCeEEeeCCCCCHHHHHHHHhCCCceeEeccC-HHHHHHHHHhhhhcccCceeeecCccccCCCC--CceEEEeeee
Confidence 455679999999999975 3488999999998 7899998875 589999999876654 4799999999
Q ss_pred hhhcCChhHHHHHHHHHHhccccCcEEEEEEcCc
Q 016157 189 LHHLSTESRRKKAIEELVRVVKKGSLVLITVWAV 222 (394)
Q Consensus 189 l~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~ 222 (394)
||++++++ ..++|++++++|+|||+++|.....
T Consensus 254 lh~~~d~~-~~~iL~~~~~al~pgg~lli~e~~~ 286 (353)
T 4a6d_A 254 LHDWADGK-CSHLLERIYHTCKPGGGILVIESLL 286 (353)
T ss_dssp GGGSCHHH-HHHHHHHHHHHCCTTCEEEEEECCC
T ss_pred cccCCHHH-HHHHHHHHHhhCCCCCEEEEEEeee
Confidence 99998755 6789999999999999999997654
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=7.4e-13 Score=131.03 Aligned_cols=98 Identities=24% Similarity=0.294 Sum_probs=83.7
Q ss_pred CCCCCEEEEEcCccCcccc----cCCCcEEEEEeCCHHHHHHHHHc-CCeEEEeecCCCCCCCCCccEEEehhhhhhcCC
Q 016157 120 LPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR-GHEVLVADAVNLPYRSDFGDAAISIAVLHHLST 194 (394)
Q Consensus 120 l~~g~~VLDvGCG~G~~l~----~~~~~~v~gvD~S~~~l~~a~~~-~i~~~~~D~~~lp~~~~~fD~Vi~~~vl~hl~~ 194 (394)
++++.+|||||||+|.++. ..+...++++|+ +.+++.|++. +++++.+|+.+ +++. ||+|++..++||+++
T Consensus 207 ~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~~~-~~~~--~D~v~~~~~lh~~~d 282 (372)
T 1fp1_D 207 FEGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENAPPLSGIEHVGGDMFA-SVPQ--GDAMILKAVCHNWSD 282 (372)
T ss_dssp TTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCCTTEEEEECCTTT-CCCC--EEEEEEESSGGGSCH
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeCh-HHHHHhhhhcCCCEEEeCCccc-CCCC--CCEEEEecccccCCH
Confidence 5567899999999999753 367889999999 9999888764 78999999988 6654 999999999999987
Q ss_pred hhHHHHHHHHHHhccccCcEEEEEEcCc
Q 016157 195 ESRRKKAIEELVRVVKKGSLVLITVWAV 222 (394)
Q Consensus 195 ~~~~~~~L~ei~r~LkpGG~lli~~~~~ 222 (394)
.. ...+|+++.++|||||+++|..+..
T Consensus 283 ~~-~~~~l~~~~~~L~pgG~l~i~e~~~ 309 (372)
T 1fp1_D 283 EK-CIEFLSNCHKALSPNGKVIIVEFIL 309 (372)
T ss_dssp HH-HHHHHHHHHHHEEEEEEEEEEEEEE
T ss_pred HH-HHHHHHHHHHhcCCCCEEEEEEecc
Confidence 43 4599999999999999999987543
|
| >3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=1.2e-12 Score=124.14 Aligned_cols=100 Identities=21% Similarity=0.262 Sum_probs=82.2
Q ss_pred CEEEEEcCccCc--c-c----ccCCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeecCCCC------CCCCCcc--
Q 016157 124 SLVLDAGCGNGK--Y-L----GLNPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLP------YRSDFGD-- 181 (394)
Q Consensus 124 ~~VLDvGCG~G~--~-l----~~~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~lp------~~~~~fD-- 181 (394)
.+|||||||++. + . ...|+..|+++|.|+.|++.|+++ ++.++++|+.+++ ...+.||
T Consensus 80 ~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~~~~~~~v~aD~~~~~~~l~~~~~~~~~D~~ 159 (277)
T 3giw_A 80 RQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTPEGRTAYVEADMLDPASILDAPELRDTLDLT 159 (277)
T ss_dssp CEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCSSSEEEEEECCTTCHHHHHTCHHHHTTCCTT
T ss_pred CEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCCCCcEEEEEecccChhhhhcccccccccCcC
Confidence 689999999732 2 2 136889999999999999999886 2789999998852 1134565
Q ss_pred ---EEEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCcc
Q 016157 182 ---AAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVE 223 (394)
Q Consensus 182 ---~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~~ 223 (394)
.|+++.+|||+++.+++..+|+++.+.|+|||+|+++.+..+
T Consensus 160 ~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~PGG~Lvls~~~~d 204 (277)
T 3giw_A 160 RPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPSGSYLAMSIGTAE 204 (277)
T ss_dssp SCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCTTCEEEEEEECCT
T ss_pred CcchHHhhhhHhcCCchhhHHHHHHHHHHhCCCCcEEEEEeccCC
Confidence 688999999999876678999999999999999999987754
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.34 E-value=1.1e-12 Score=115.63 Aligned_cols=98 Identities=16% Similarity=0.205 Sum_probs=79.4
Q ss_pred CCCCEEEEEcCccCccccc--CCCcEEEEEeCCHHHHHHHHHcCCeEEEeecCCCCCCCCCccEEEehhhhhhcCCh---
Q 016157 121 PSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTE--- 195 (394)
Q Consensus 121 ~~g~~VLDvGCG~G~~l~~--~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~lp~~~~~fD~Vi~~~vl~hl~~~--- 195 (394)
.++.+|||+|||+|.++.. ..+ .|+|+|+|+.|++. ..+++++++|+.+ ++.+++||+|+++..+++..+.
T Consensus 22 ~~~~~vLD~GcG~G~~~~~l~~~~-~v~gvD~s~~~~~~--~~~~~~~~~d~~~-~~~~~~fD~i~~n~~~~~~~~~~~~ 97 (170)
T 3q87_B 22 LEMKIVLDLGTSTGVITEQLRKRN-TVVSTDLNIRALES--HRGGNLVRADLLC-SINQESVDVVVFNPPYVPDTDDPII 97 (170)
T ss_dssp CCSCEEEEETCTTCHHHHHHTTTS-EEEEEESCHHHHHT--CSSSCEEECSTTT-TBCGGGCSEEEECCCCBTTCCCTTT
T ss_pred CCCCeEEEeccCccHHHHHHHhcC-cEEEEECCHHHHhc--ccCCeEEECChhh-hcccCCCCEEEECCCCccCCccccc
Confidence 4567999999999997532 333 99999999999998 5579999999988 6667899999999888876553
Q ss_pred ---hHHHHHHHHHHhccccCcEEEEEEcCcc
Q 016157 196 ---SRRKKAIEELVRVVKKGSLVLITVWAVE 223 (394)
Q Consensus 196 ---~~~~~~L~ei~r~LkpGG~lli~~~~~~ 223 (394)
.....+++++.+.| |||++++..+...
T Consensus 98 ~~~~~~~~~~~~~~~~l-pgG~l~~~~~~~~ 127 (170)
T 3q87_B 98 GGGYLGREVIDRFVDAV-TVGMLYLLVIEAN 127 (170)
T ss_dssp BCCGGGCHHHHHHHHHC-CSSEEEEEEEGGG
T ss_pred cCCcchHHHHHHHHhhC-CCCEEEEEEecCC
Confidence 11357889999999 9999999886543
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.34 E-value=5.4e-12 Score=115.62 Aligned_cols=106 Identities=12% Similarity=0.102 Sum_probs=81.0
Q ss_pred HcCCCCCCEEEEEcCc-cCccccc---CCCcEEEEEeCCHHHHHHHHHc------CCeEEEeecCCC-CCCCCCccEEEe
Q 016157 117 LNSLPSGSLVLDAGCG-NGKYLGL---NPDCFFVGCDISPSLIKICVDR------GHEVLVADAVNL-PYRSDFGDAAIS 185 (394)
Q Consensus 117 l~~l~~g~~VLDvGCG-~G~~l~~---~~~~~v~gvD~S~~~l~~a~~~------~i~~~~~D~~~l-p~~~~~fD~Vi~ 185 (394)
...++++.+|||+||| +|.++.. ..+..|+|+|+|+.+++.|+++ +++++++|+..+ ++.+++||+|++
T Consensus 50 ~~~~~~~~~vLDlG~G~~G~~~~~la~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~I~~ 129 (230)
T 3evz_A 50 KTFLRGGEVALEIGTGHTAMMALMAEKFFNCKVTATEVDEEFFEYARRNIERNNSNVRLVKSNGGIIKGVVEGTFDVIFS 129 (230)
T ss_dssp HTTCCSSCEEEEECCTTTCHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHTTCCCEEEECSSCSSTTTCCSCEEEEEE
T ss_pred HhhcCCCCEEEEcCCCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEeCCchhhhhcccCceeEEEE
Confidence 3456788999999999 9997532 1267999999999999999876 489999997543 355689999999
Q ss_pred hhhhhhcCCh----------------hHHHHHHHHHHhccccCcEEEEEEcCc
Q 016157 186 IAVLHHLSTE----------------SRRKKAIEELVRVVKKGSLVLITVWAV 222 (394)
Q Consensus 186 ~~vl~hl~~~----------------~~~~~~L~ei~r~LkpGG~lli~~~~~ 222 (394)
+..+++.... +....+++++.++|||||++++.....
T Consensus 130 npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 182 (230)
T 3evz_A 130 APPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPDK 182 (230)
T ss_dssp CCCCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEESC
T ss_pred CCCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEeccc
Confidence 8666554331 113789999999999999999987543
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=9.4e-13 Score=121.64 Aligned_cols=96 Identities=17% Similarity=0.356 Sum_probs=71.2
Q ss_pred CCCCEEEEEcCccCcccc----cCCCcEEEEEeCC-HHHHHHH---HHc-------CCeEEEeecCCCCCC-CCCccEEE
Q 016157 121 PSGSLVLDAGCGNGKYLG----LNPDCFFVGCDIS-PSLIKIC---VDR-------GHEVLVADAVNLPYR-SDFGDAAI 184 (394)
Q Consensus 121 ~~g~~VLDvGCG~G~~l~----~~~~~~v~gvD~S-~~~l~~a---~~~-------~i~~~~~D~~~lp~~-~~~fD~Vi 184 (394)
.++.+|||||||+|.++. ..++..|+|+|+| +.|++.| +++ ++.++++|+.++|.. .+.+|.|.
T Consensus 23 ~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~l~~~~~d~v~~i~ 102 (225)
T 3p2e_A 23 QFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAESLPFELKNIADSIS 102 (225)
T ss_dssp TCSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTTBCCGGGTTCEEEEE
T ss_pred CCCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCHHHhhhhccCeEEEEE
Confidence 577899999999999753 2678899999999 7787776 543 578999999998632 24555555
Q ss_pred ehhhh----hhc-CChhHHHHHHHHHHhccccCcEEEEEE
Q 016157 185 SIAVL----HHL-STESRRKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 185 ~~~vl----~hl-~~~~~~~~~L~ei~r~LkpGG~lli~~ 219 (394)
++... +|. .+ ...+|+++.|+|||||++++..
T Consensus 103 ~~~~~~~~~~~~~~~---~~~~l~~~~r~LkpGG~l~i~~ 139 (225)
T 3p2e_A 103 ILFPWGTLLEYVIKP---NRDILSNVADLAKKEAHFEFVT 139 (225)
T ss_dssp EESCCHHHHHHHHTT---CHHHHHHHHTTEEEEEEEEEEE
T ss_pred EeCCCcHHhhhhhcc---hHHHHHHHHHhcCCCcEEEEEE
Confidence 54322 121 12 3578999999999999999944
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=2.6e-12 Score=127.85 Aligned_cols=102 Identities=14% Similarity=0.083 Sum_probs=85.0
Q ss_pred CCCCEEEEEcCccCccccc--CCCcEEEEEeCCHHHHHHHHHc------CCeEEEeecCCCCCCCCCccEEEehhhhhhc
Q 016157 121 PSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR------GHEVLVADAVNLPYRSDFGDAAISIAVLHHL 192 (394)
Q Consensus 121 ~~g~~VLDvGCG~G~~l~~--~~~~~v~gvD~S~~~l~~a~~~------~i~~~~~D~~~lp~~~~~fD~Vi~~~vl~hl 192 (394)
.++.+|||+|||+|.++.. ..+..|+|+|+|+.+++.|+++ .++++.+|+.+.+..+++||+|+++..+|+.
T Consensus 232 ~~~~~VLDlGcG~G~~~~~la~~g~~V~gvDis~~al~~A~~n~~~~~~~v~~~~~D~~~~~~~~~~fD~Ii~npp~~~~ 311 (381)
T 3dmg_A 232 VRGRQVLDLGAGYGALTLPLARMGAEVVGVEDDLASVLSLQKGLEANALKAQALHSDVDEALTEEARFDIIVTNPPFHVG 311 (381)
T ss_dssp TTTCEEEEETCTTSTTHHHHHHTTCEEEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTSCTTCCEEEEEECCCCCTT
T ss_pred CCCCEEEEEeeeCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEcchhhccccCCCeEEEEECCchhhc
Confidence 3678999999999997532 2367999999999999999886 4789999999987767899999999998882
Q ss_pred CC--hhHHHHHHHHHHhccccCcEEEEEEcCc
Q 016157 193 ST--ESRRKKAIEELVRVVKKGSLVLITVWAV 222 (394)
Q Consensus 193 ~~--~~~~~~~L~ei~r~LkpGG~lli~~~~~ 222 (394)
.. ......+++++.++|||||++++.....
T Consensus 312 ~~~~~~~~~~~l~~~~~~LkpGG~l~iv~n~~ 343 (381)
T 3dmg_A 312 GAVILDVAQAFVNVAAARLRPGGVFFLVSNPF 343 (381)
T ss_dssp CSSCCHHHHHHHHHHHHHEEEEEEEEEEECTT
T ss_pred ccccHHHHHHHHHHHHHhcCcCcEEEEEEcCC
Confidence 21 2337899999999999999999987544
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.33 E-value=1.3e-12 Score=114.84 Aligned_cols=108 Identities=16% Similarity=0.059 Sum_probs=81.7
Q ss_pred HHHHHHcCCCCCCEEEEEcCccCcccc---cCCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeecCC-CCCCCCC
Q 016157 112 KVATFLNSLPSGSLVLDAGCGNGKYLG---LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVN-LPYRSDF 179 (394)
Q Consensus 112 ~l~~~l~~l~~g~~VLDvGCG~G~~l~---~~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~-lp~~~~~ 179 (394)
.+...+....++.+|||+|||+|.++. ..+...++|+|+|+.+++.|+++ +++++.+|+.+ ++..++.
T Consensus 21 ~~~~~l~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 100 (177)
T 2esr_A 21 AIFNMIGPYFNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGR 100 (177)
T ss_dssp HHHHHHCSCCCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSC
T ss_pred HHHHHHHhhcCCCeEEEeCCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHhhcCC
Confidence 344555545678899999999999743 23446999999999999999875 36889999877 4444567
Q ss_pred ccEEEehhhhhhcCChhHHHHHHHHHH--hccccCcEEEEEEcCcc
Q 016157 180 GDAAISIAVLHHLSTESRRKKAIEELV--RVVKKGSLVLITVWAVE 223 (394)
Q Consensus 180 fD~Vi~~~vl~hl~~~~~~~~~L~ei~--r~LkpGG~lli~~~~~~ 223 (394)
||+|++...++.. . ....++.+. ++|||||.+++......
T Consensus 101 fD~i~~~~~~~~~-~---~~~~~~~l~~~~~L~~gG~l~~~~~~~~ 142 (177)
T 2esr_A 101 FDLVFLDPPYAKE-T---IVATIEALAAKNLLSEQVMVVCETDKTV 142 (177)
T ss_dssp EEEEEECCSSHHH-H---HHHHHHHHHHTTCEEEEEEEEEEEETTC
T ss_pred CCEEEECCCCCcc-h---HHHHHHHHHhCCCcCCCcEEEEEECCcc
Confidence 9999998665421 1 456677776 99999999999886543
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=99.32 E-value=2.8e-13 Score=121.92 Aligned_cols=105 Identities=20% Similarity=0.232 Sum_probs=64.2
Q ss_pred HHcCCCCCCEEEEEcCccCcccc----cCCCcEEEEEeCCHHHHHHHHHc------CCeEEEeecCCCCCCC-----CCc
Q 016157 116 FLNSLPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR------GHEVLVADAVNLPYRS-----DFG 180 (394)
Q Consensus 116 ~l~~l~~g~~VLDvGCG~G~~l~----~~~~~~v~gvD~S~~~l~~a~~~------~i~~~~~D~~~lp~~~-----~~f 180 (394)
.+....++.+|||+|||+|.++. ..++..++|+|+|+.+++.|+++ +++++++|+.+ ++.+ ++|
T Consensus 24 ~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~-~~~~~~~~~~~f 102 (215)
T 4dzr_A 24 FLKRMPSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGAVVDWAAADGIE-WLIERAERGRPW 102 (215)
T ss_dssp HHTTCCTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC-------------------CCHHHHHH-HHHHHHHTTCCB
T ss_pred HhhhcCCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhCCceEEEEcchHh-hhhhhhhccCcc
Confidence 33333678899999999999743 35678999999999999999877 46788888877 5555 899
Q ss_pred cEEEeh------hhhhhcCChhH-----------------HHHHHHHHHhccccCcEEEEEEcC
Q 016157 181 DAAISI------AVLHHLSTESR-----------------RKKAIEELVRVVKKGSLVLITVWA 221 (394)
Q Consensus 181 D~Vi~~------~vl~hl~~~~~-----------------~~~~L~ei~r~LkpGG~lli~~~~ 221 (394)
|+|+++ ..++|+....+ ...+++++.++|||||++++....
T Consensus 103 D~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 166 (215)
T 4dzr_A 103 HAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLEVG 166 (215)
T ss_dssp SEEEECCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEECT
T ss_pred cEEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEEEC
Confidence 999995 34444433221 178899999999999995555443
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.32 E-value=2.5e-12 Score=117.98 Aligned_cols=95 Identities=18% Similarity=0.199 Sum_probs=78.9
Q ss_pred CCCCCCEEEEEcCccCccccc--CCCcEEEEEeCCHHHHHHHHHc-----CCeEEEeecCCCCCCCCCccEEEehhhhhh
Q 016157 119 SLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR-----GHEVLVADAVNLPYRSDFGDAAISIAVLHH 191 (394)
Q Consensus 119 ~l~~g~~VLDvGCG~G~~l~~--~~~~~v~gvD~S~~~l~~a~~~-----~i~~~~~D~~~lp~~~~~fD~Vi~~~vl~h 191 (394)
.+.++.+|||||||+|.++.. ..+..++|+|+++.+++.|+++ +++++.+|+......+++||+|++..+++|
T Consensus 67 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~~~~ 146 (231)
T 1vbf_A 67 DLHKGQKVLEIGTGIGYYTALIAEIVDKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYEEEKPYDRVVVWATAPT 146 (231)
T ss_dssp TCCTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCGGGCCEEEEEESSBBSS
T ss_pred CCCCCCEEEEEcCCCCHHHHHHHHHcCEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCcccccccCCCccEEEECCcHHH
Confidence 456788999999999997532 1237999999999999999987 688999999873334678999999999999
Q ss_pred cCChhHHHHHHHHHHhccccCcEEEEEEcCc
Q 016157 192 LSTESRRKKAIEELVRVVKKGSLVLITVWAV 222 (394)
Q Consensus 192 l~~~~~~~~~L~ei~r~LkpGG~lli~~~~~ 222 (394)
+.. ++.++|||||++++.+...
T Consensus 147 ~~~---------~~~~~L~pgG~l~~~~~~~ 168 (231)
T 1vbf_A 147 LLC---------KPYEQLKEGGIMILPIGVG 168 (231)
T ss_dssp CCH---------HHHHTEEEEEEEEEEECSS
T ss_pred HHH---------HHHHHcCCCcEEEEEEcCC
Confidence 852 5789999999999997643
|
| >3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=4.2e-13 Score=133.31 Aligned_cols=121 Identities=17% Similarity=0.198 Sum_probs=88.5
Q ss_pred HHhhcccccccccc---ch-HHHHHHHcCC-CCCCEEEEEcCc------cCcc-c---c-cCCCcEEEEEeCCHHHHHHH
Q 016157 95 YDAIAPHFSSTRFA---KW-PKVATFLNSL-PSGSLVLDAGCG------NGKY-L---G-LNPDCFFVGCDISPSLIKIC 158 (394)
Q Consensus 95 Yd~~a~~y~~~~~~---~~-~~l~~~l~~l-~~g~~VLDvGCG------~G~~-l---~-~~~~~~v~gvD~S~~~l~~a 158 (394)
|++++..|...... .+ ..+..++..+ .++.+||||||| +|.. + . +.++..|+|+|+|+.|. .
T Consensus 184 fd~lA~~Y~tDK~~~~h~y~~~Ye~lL~~l~~~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~--~ 261 (419)
T 3sso_A 184 LSELSSRYFTPKFGFLHWFTPHYDRHFRDYRNQQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH--V 261 (419)
T ss_dssp HHHHHHHTTCTTBSSSCBCHHHHHHHHGGGTTSCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG--G
T ss_pred HHHHHHHhCCCcccccchHHHHHHHHHHhhcCCCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh--h
Confidence 55666666543333 12 3444445433 456799999999 5543 2 1 25788999999999984 2
Q ss_pred HHcCCeEEEeecCCCCCC------CCCccEEEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 016157 159 VDRGHEVLVADAVNLPYR------SDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 221 (394)
Q Consensus 159 ~~~~i~~~~~D~~~lp~~------~~~fD~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~ 221 (394)
...+++++++|+.++++. +++||+|++... |++.+ ...+|+++.++|||||++++..+.
T Consensus 262 ~~~rI~fv~GDa~dlpf~~~l~~~d~sFDlVisdgs-H~~~d---~~~aL~el~rvLKPGGvlVi~Dl~ 326 (419)
T 3sso_A 262 DELRIRTIQGDQNDAEFLDRIARRYGPFDIVIDDGS-HINAH---VRTSFAALFPHVRPGGLYVIEDMW 326 (419)
T ss_dssp CBTTEEEEECCTTCHHHHHHHHHHHCCEEEEEECSC-CCHHH---HHHHHHHHGGGEEEEEEEEEECGG
T ss_pred cCCCcEEEEecccccchhhhhhcccCCccEEEECCc-ccchh---HHHHHHHHHHhcCCCeEEEEEecc
Confidence 223799999999998876 689999999754 55543 789999999999999999998754
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 | Back alignment and structure |
|---|
Probab=99.31 E-value=1.6e-12 Score=126.72 Aligned_cols=97 Identities=23% Similarity=0.227 Sum_probs=78.1
Q ss_pred CCCCCEEEEEcCccCcccc---cCCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeecCCCCCCCCCccEEEehhh
Q 016157 120 LPSGSLVLDAGCGNGKYLG---LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISIAV 188 (394)
Q Consensus 120 l~~g~~VLDvGCG~G~~l~---~~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~lp~~~~~fD~Vi~~~v 188 (394)
+.++.+|||||||+|.++. ..+..+|+|+|+| .|++.|+++ +++++.+|+.++++++++||+|++..+
T Consensus 36 ~~~~~~VLDiGcGtG~ls~~la~~g~~~v~~vD~s-~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~~~ 114 (328)
T 1g6q_1 36 LFKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMS-SIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWM 114 (328)
T ss_dssp HHTTCEEEEETCTTSHHHHHHHHTCCSEEEEEESS-THHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCC
T ss_pred hcCCCEEEEecCccHHHHHHHHHCCCCEEEEEChH-HHHHHHHHHHHHcCCCCCEEEEECchhhccCCCCcccEEEEeCc
Confidence 3467899999999998743 2333499999999 689888875 378999999999887789999999865
Q ss_pred hhhcCChhHHHHHHHHHHhccccCcEEEE
Q 016157 189 LHHLSTESRRKKAIEELVRVVKKGSLVLI 217 (394)
Q Consensus 189 l~hl~~~~~~~~~L~ei~r~LkpGG~lli 217 (394)
.+++.....+..++.++.++|||||+++.
T Consensus 115 ~~~l~~~~~~~~~l~~~~~~LkpgG~li~ 143 (328)
T 1g6q_1 115 GYFLLYESMMDTVLYARDHYLVEGGLIFP 143 (328)
T ss_dssp BTTBSTTCCHHHHHHHHHHHEEEEEEEES
T ss_pred hhhcccHHHHHHHHHHHHhhcCCCeEEEE
Confidence 55554433378899999999999999974
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.31 E-value=2.2e-12 Score=113.88 Aligned_cols=101 Identities=12% Similarity=0.011 Sum_probs=78.4
Q ss_pred CCCCCCEEEEEcCccCcccc---cCCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeecCCCC----CCCCCccEE
Q 016157 119 SLPSGSLVLDAGCGNGKYLG---LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLP----YRSDFGDAA 183 (394)
Q Consensus 119 ~l~~g~~VLDvGCG~G~~l~---~~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~lp----~~~~~fD~V 183 (394)
...++.+|||+|||+|.++. ..+...|+|+|+++.+++.|+++ +++++++|+.+.. +.+++||+|
T Consensus 41 ~~~~~~~vLD~GcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i 120 (187)
T 2fhp_A 41 PYFDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLV 120 (187)
T ss_dssp SCCSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred hhcCCCCEEEeCCccCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHhcCCCCCEE
Confidence 34567899999999999743 23446999999999999999875 3789999987732 226789999
Q ss_pred EehhhhhhcCChhHHHHHHHHH--HhccccCcEEEEEEcCcc
Q 016157 184 ISIAVLHHLSTESRRKKAIEEL--VRVVKKGSLVLITVWAVE 223 (394)
Q Consensus 184 i~~~vl~hl~~~~~~~~~L~ei--~r~LkpGG~lli~~~~~~ 223 (394)
++...++ ... ....++.+ .++|||||.+++......
T Consensus 121 ~~~~~~~-~~~---~~~~~~~l~~~~~L~~gG~l~~~~~~~~ 158 (187)
T 2fhp_A 121 LLDPPYA-KQE---IVSQLEKMLERQLLTNEAVIVCETDKTV 158 (187)
T ss_dssp EECCCGG-GCC---HHHHHHHHHHTTCEEEEEEEEEEEETTC
T ss_pred EECCCCC-chh---HHHHHHHHHHhcccCCCCEEEEEeCCcc
Confidence 9987754 333 45667777 899999999999876543
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=2e-12 Score=126.91 Aligned_cols=98 Identities=15% Similarity=0.190 Sum_probs=83.2
Q ss_pred CCCCCEEEEEcCccCcccc----cCCCcEEEEEeCCHHHHHHHHHc-CCeEEEeecCCCCCCCCCccEEEehhhhhhcCC
Q 016157 120 LPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR-GHEVLVADAVNLPYRSDFGDAAISIAVLHHLST 194 (394)
Q Consensus 120 l~~g~~VLDvGCG~G~~l~----~~~~~~v~gvD~S~~~l~~a~~~-~i~~~~~D~~~lp~~~~~fD~Vi~~~vl~hl~~ 194 (394)
++++.+|||||||+|.++. ..|+.+++|+|+ +.+++.|++. +++++.+|+.+ +++. ||+|++..++||+++
T Consensus 186 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~~~-~~p~--~D~v~~~~~lh~~~d 261 (352)
T 1fp2_A 186 FDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLSGSNNLTYVGGDMFT-SIPN--ADAVLLKYILHNWTD 261 (352)
T ss_dssp HTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCBTTEEEEECCTTT-CCCC--CSEEEEESCGGGSCH
T ss_pred cccCceEEEeCCCccHHHHHHHHHCCCCeEEEeeC-HHHHhhcccCCCcEEEeccccC-CCCC--ccEEEeehhhccCCH
Confidence 3466899999999999753 367889999999 9999988764 68999999976 5543 999999999999987
Q ss_pred hhHHHHHHHHHHhcccc---CcEEEEEEcCc
Q 016157 195 ESRRKKAIEELVRVVKK---GSLVLITVWAV 222 (394)
Q Consensus 195 ~~~~~~~L~ei~r~Lkp---GG~lli~~~~~ 222 (394)
.+ ...+|+++.++||| ||+++|..+..
T Consensus 262 ~~-~~~~l~~~~~~L~p~~~gG~l~i~e~~~ 291 (352)
T 1fp2_A 262 KD-CLRILKKCKEAVTNDGKRGKVTIIDMVI 291 (352)
T ss_dssp HH-HHHHHHHHHHHHSGGGCCCEEEEEECEE
T ss_pred HH-HHHHHHHHHHhCCCCCCCcEEEEEEeec
Confidence 43 45999999999999 99999997654
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=3.9e-12 Score=124.84 Aligned_cols=98 Identities=18% Similarity=0.231 Sum_probs=83.1
Q ss_pred CCCCCEEEEEcCccCcccc----cCCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeecCCCCCCCCCccEEEehh
Q 016157 120 LPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISIA 187 (394)
Q Consensus 120 l~~g~~VLDvGCG~G~~l~----~~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~lp~~~~~fD~Vi~~~ 187 (394)
+.++.+|||||||+|.++. ..++..++++|+ +.+++.|+++ +++++.+|+.+ +++. .||+|++..
T Consensus 181 ~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~-~~D~v~~~~ 257 (360)
T 1tw3_A 181 WTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFE-PLPR-KADAIILSF 257 (360)
T ss_dssp CTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTS-CCSS-CEEEEEEES
T ss_pred CccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecC-HHHHHHHHHHHHhcCCCCceEEEeCCCCC-CCCC-CccEEEEcc
Confidence 5677899999999999753 367789999999 9999999875 58899999876 3433 499999999
Q ss_pred hhhhcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 016157 188 VLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 221 (394)
Q Consensus 188 vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~ 221 (394)
++||+++.. ...+|+++.++|||||++++..+.
T Consensus 258 vl~~~~~~~-~~~~l~~~~~~L~pgG~l~i~e~~ 290 (360)
T 1tw3_A 258 VLLNWPDHD-AVRILTRCAEALEPGGRILIHERD 290 (360)
T ss_dssp CGGGSCHHH-HHHHHHHHHHTEEEEEEEEEEECC
T ss_pred cccCCCHHH-HHHHHHHHHHhcCCCcEEEEEEEe
Confidence 999998744 468999999999999999999876
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A | Back alignment and structure |
|---|
Probab=99.30 E-value=2.8e-12 Score=126.04 Aligned_cols=97 Identities=16% Similarity=0.093 Sum_probs=79.9
Q ss_pred CCCCCEEEEEcCccCcccc---cCCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeecCCCCCCCCCccEEEehhh
Q 016157 120 LPSGSLVLDAGCGNGKYLG---LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISIAV 188 (394)
Q Consensus 120 l~~g~~VLDvGCG~G~~l~---~~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~lp~~~~~fD~Vi~~~v 188 (394)
+.++.+|||||||+|.++. ..+..+|+|+|+|+ +++.|+++ +++++.+|+.+++++ ++||+|++..+
T Consensus 48 ~~~~~~VLDiGcGtG~ls~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~-~~~D~Ivs~~~ 125 (348)
T 2y1w_A 48 DFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVSLP-EQVDIIISEPM 125 (348)
T ss_dssp GTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-HHHHHHHHHHHTTCTTTEEEEESCTTTCCCS-SCEEEEEECCC
T ss_pred cCCcCEEEEcCCCccHHHHHHHhCCCCEEEEECCHH-HHHHHHHHHHHcCCCCcEEEEEcchhhCCCC-CceeEEEEeCc
Confidence 4578899999999999743 23445999999996 88888764 478999999998765 68999999999
Q ss_pred hhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 016157 189 LHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 189 l~hl~~~~~~~~~L~ei~r~LkpGG~lli~~ 219 (394)
++|+..+. ....+.++.++|||||++++..
T Consensus 126 ~~~~~~~~-~~~~l~~~~~~LkpgG~li~~~ 155 (348)
T 2y1w_A 126 GYMLFNER-MLESYLHAKKYLKPSGNMFPTI 155 (348)
T ss_dssp BTTBTTTS-HHHHHHHGGGGEEEEEEEESCE
T ss_pred hhcCChHH-HHHHHHHHHhhcCCCeEEEEec
Confidence 99887644 5778889999999999998664
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=3.5e-12 Score=119.64 Aligned_cols=93 Identities=20% Similarity=0.124 Sum_probs=78.1
Q ss_pred CCCCEEEEEcCccCccc----ccCCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeecCCCCCC---CCCccEEEeh
Q 016157 121 PSGSLVLDAGCGNGKYL----GLNPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYR---SDFGDAAISI 186 (394)
Q Consensus 121 ~~g~~VLDvGCG~G~~l----~~~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~lp~~---~~~fD~Vi~~ 186 (394)
.++.+|||||||+|... ...++..|+|+|+|+.+++.|+++ +++++++|+.+++.. +++||+|++.
T Consensus 79 ~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~~d~~~~~~~~~~~~~fD~I~s~ 158 (249)
T 3g89_A 79 QGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLKGARALWGRAEVLAREAGHREAYARAVAR 158 (249)
T ss_dssp CSSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEECCHHHHTTSTTTTTCEEEEEEE
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCceEEEECcHHHhhcccccCCCceEEEEC
Confidence 46789999999999863 236788999999999999999876 478999999987653 4799999997
Q ss_pred hhhhhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 016157 187 AVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (394)
Q Consensus 187 ~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~ 220 (394)
++ .+ ...+++.+.++|||||++++..-
T Consensus 159 a~----~~---~~~ll~~~~~~LkpgG~l~~~~g 185 (249)
T 3g89_A 159 AV----AP---LCVLSELLLPFLEVGGAAVAMKG 185 (249)
T ss_dssp SS----CC---HHHHHHHHGGGEEEEEEEEEEEC
T ss_pred Cc----CC---HHHHHHHHHHHcCCCeEEEEEeC
Confidence 54 34 67899999999999999998753
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.29 E-value=8.3e-12 Score=123.99 Aligned_cols=100 Identities=19% Similarity=0.155 Sum_probs=79.6
Q ss_pred CCCCEEEEEcCccCcccc----cCCCcEEEEEeCCHHHHHHHHHc----C------CeEEEeecCCCCCCCCCccEEEeh
Q 016157 121 PSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR----G------HEVLVADAVNLPYRSDFGDAAISI 186 (394)
Q Consensus 121 ~~g~~VLDvGCG~G~~l~----~~~~~~v~gvD~S~~~l~~a~~~----~------i~~~~~D~~~lp~~~~~fD~Vi~~ 186 (394)
.++.+|||+|||+|.++. ..++..|+|+|+|+.+++.|+++ + ++++.+|+.+ ++++++||+|+++
T Consensus 221 ~~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~-~~~~~~fD~Ii~n 299 (375)
T 4dcm_A 221 NLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALS-GVEPFRFNAVLCN 299 (375)
T ss_dssp SCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTT-TCCTTCEEEEEEC
T ss_pred cCCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhc-cCCCCCeeEEEEC
Confidence 345799999999999743 36788999999999999999876 2 6679999988 5667899999999
Q ss_pred hhhhhc---CChhHHHHHHHHHHhccccCcEEEEEEcCc
Q 016157 187 AVLHHL---STESRRKKAIEELVRVVKKGSLVLITVWAV 222 (394)
Q Consensus 187 ~vl~hl---~~~~~~~~~L~ei~r~LkpGG~lli~~~~~ 222 (394)
..+|+. .... ...+|+++.++|||||++++.....
T Consensus 300 ppfh~~~~~~~~~-~~~~l~~~~~~LkpgG~l~iv~n~~ 337 (375)
T 4dcm_A 300 PPFHQQHALTDNV-AWEMFHHARRCLKINGELYIVANRH 337 (375)
T ss_dssp CCC-------CCH-HHHHHHHHHHHEEEEEEEEEEEETT
T ss_pred CCcccCcccCHHH-HHHHHHHHHHhCCCCcEEEEEEECC
Confidence 888863 2222 4578999999999999999986443
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.29 E-value=5.7e-12 Score=116.16 Aligned_cols=96 Identities=15% Similarity=0.228 Sum_probs=74.7
Q ss_pred CCCCCEEEEEcCccCcccc----c-CCCcEEEEEeCCHHH----HHHHHH-cCCeEEEeecCC---CCCCCCCccEEEeh
Q 016157 120 LPSGSLVLDAGCGNGKYLG----L-NPDCFFVGCDISPSL----IKICVD-RGHEVLVADAVN---LPYRSDFGDAAISI 186 (394)
Q Consensus 120 l~~g~~VLDvGCG~G~~l~----~-~~~~~v~gvD~S~~~----l~~a~~-~~i~~~~~D~~~---lp~~~~~fD~Vi~~ 186 (394)
+.++.+|||+|||+|.++. . .+...|+|+|+|+.+ ++.|++ .+++++.+|+.+ +++.+++||+|++.
T Consensus 75 ~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~~D~V~~~ 154 (233)
T 2ipx_A 75 IKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKRTNIIPVIEDARHPHKYRMLIAMVDVIFAD 154 (233)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHCTTEEEECSCTTCGGGGGGGCCCEEEEEEC
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhccCCeEEEEcccCChhhhcccCCcEEEEEEc
Confidence 5678899999999998753 2 356799999999765 455555 378999999987 45557899999995
Q ss_pred hhhhhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 016157 187 AVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (394)
Q Consensus 187 ~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~ 220 (394)
.. .......++.++.++|||||++++...
T Consensus 155 ~~-----~~~~~~~~~~~~~~~LkpgG~l~i~~~ 183 (233)
T 2ipx_A 155 VA-----QPDQTRIVALNAHTFLRNGGHFVISIK 183 (233)
T ss_dssp CC-----CTTHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CC-----CccHHHHHHHHHHHHcCCCeEEEEEEc
Confidence 44 323245678999999999999999754
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.29 E-value=5.8e-12 Score=113.40 Aligned_cols=91 Identities=15% Similarity=0.106 Sum_probs=76.4
Q ss_pred CCCEEEEEcCccCcccc----cCCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeecCCCCCCCCCccEEEehhhhh
Q 016157 122 SGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFGDAAISIAVLH 190 (394)
Q Consensus 122 ~g~~VLDvGCG~G~~l~----~~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~lp~~~~~fD~Vi~~~vl~ 190 (394)
++.+|||+|||+|.++. ..++..++|+|+|+.+++.|+++ +++++.+|+.+++ +.++||+|++..+
T Consensus 65 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-~~~~~D~i~~~~~-- 141 (207)
T 1jsx_A 65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFP-SEPPFDGVISRAF-- 141 (207)
T ss_dssp CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSC-CCSCEEEEECSCS--
T ss_pred CCCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEecchhhCC-ccCCcCEEEEecc--
Confidence 47899999999999743 35778999999999999999875 4789999999876 4578999998642
Q ss_pred hcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 016157 191 HLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (394)
Q Consensus 191 hl~~~~~~~~~L~ei~r~LkpGG~lli~~~ 220 (394)
.+ ...+++++.++|+|||.+++...
T Consensus 142 --~~---~~~~l~~~~~~L~~gG~l~~~~~ 166 (207)
T 1jsx_A 142 --AS---LNDMVSWCHHLPGEQGRFYALKG 166 (207)
T ss_dssp --SS---HHHHHHHHTTSEEEEEEEEEEES
T ss_pred --CC---HHHHHHHHHHhcCCCcEEEEEeC
Confidence 33 67899999999999999999853
|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.29 E-value=2.4e-12 Score=115.41 Aligned_cols=100 Identities=12% Similarity=0.096 Sum_probs=76.7
Q ss_pred CCCCCCEEEEEcCccCcccc----cCC--CcEEEEEeCCHHHHHHHHHcCCeEEEeecCCCC------------------
Q 016157 119 SLPSGSLVLDAGCGNGKYLG----LNP--DCFFVGCDISPSLIKICVDRGHEVLVADAVNLP------------------ 174 (394)
Q Consensus 119 ~l~~g~~VLDvGCG~G~~l~----~~~--~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~lp------------------ 174 (394)
.++++.+|||+|||+|.++. ..+ +..|+|+|+|+.. ...++.++++|+.+.+
T Consensus 19 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~----~~~~v~~~~~d~~~~~~~~~~~~~~i~~~~~~~~ 94 (201)
T 2plw_A 19 FLKKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD----PIPNVYFIQGEIGKDNMNNIKNINYIDNMNNNSV 94 (201)
T ss_dssp CCCTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC----CCTTCEEEECCTTTTSSCCC-----------CHH
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC----CCCCceEEEccccchhhhhhccccccccccchhh
Confidence 46788999999999999743 244 6899999999832 1236899999999876
Q ss_pred -------CCCCCccEEEehhhhhhcCC----hh----HHHHHHHHHHhccccCcEEEEEEcCc
Q 016157 175 -------YRSDFGDAAISIAVLHHLST----ES----RRKKAIEELVRVVKKGSLVLITVWAV 222 (394)
Q Consensus 175 -------~~~~~fD~Vi~~~vl~hl~~----~~----~~~~~L~ei~r~LkpGG~lli~~~~~ 222 (394)
+++++||+|++..++++... .. ....+|+++.++|||||.|++.++..
T Consensus 95 ~~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~ 157 (201)
T 2plw_A 95 DYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKMYLG 157 (201)
T ss_dssp HHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECS
T ss_pred HHHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEeCC
Confidence 56679999999877665321 11 01348999999999999999988764
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.29 E-value=7.5e-12 Score=113.47 Aligned_cols=95 Identities=24% Similarity=0.233 Sum_probs=78.1
Q ss_pred CCCCCCEEEEEcCccCccccc-----CCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeecCCCCCCCCCccEEEeh
Q 016157 119 SLPSGSLVLDAGCGNGKYLGL-----NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFGDAAISI 186 (394)
Q Consensus 119 ~l~~g~~VLDvGCG~G~~l~~-----~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~lp~~~~~fD~Vi~~ 186 (394)
.+.++.+|||||||+|.++.. .+...++|+|+++.+++.|+++ ++++..+|+.......++||+|++.
T Consensus 74 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~ 153 (215)
T 2yxe_A 74 DLKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNVIVIVGDGTLGYEPLAPYDRIYTT 153 (215)
T ss_dssp TCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEESCGGGCCGGGCCEEEEEES
T ss_pred CCCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCCCCCeeEEEEC
Confidence 456788999999999997532 3457999999999999999875 4788999986533336789999999
Q ss_pred hhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCc
Q 016157 187 AVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAV 222 (394)
Q Consensus 187 ~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~ 222 (394)
.+++|++ .++.++|||||++++.+...
T Consensus 154 ~~~~~~~---------~~~~~~L~pgG~lv~~~~~~ 180 (215)
T 2yxe_A 154 AAGPKIP---------EPLIRQLKDGGKLLMPVGRY 180 (215)
T ss_dssp SBBSSCC---------HHHHHTEEEEEEEEEEESSS
T ss_pred CchHHHH---------HHHHHHcCCCcEEEEEECCC
Confidence 9999885 37889999999999998654
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... | Back alignment and structure |
|---|
Probab=99.29 E-value=2.5e-12 Score=117.72 Aligned_cols=98 Identities=20% Similarity=0.194 Sum_probs=77.6
Q ss_pred CCCCCEEEEEcCccCcccc----c-CCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeecCC-CCCCC-----CCc
Q 016157 120 LPSGSLVLDAGCGNGKYLG----L-NPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVN-LPYRS-----DFG 180 (394)
Q Consensus 120 l~~g~~VLDvGCG~G~~l~----~-~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~-lp~~~-----~~f 180 (394)
..++.+|||||||+|..+. . .++..|+|+|+++.+++.|+++ +++++++|+.+ ++... ++|
T Consensus 56 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~f 135 (221)
T 3u81_A 56 EYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTL 135 (221)
T ss_dssp HHCCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCCC
T ss_pred hcCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCce
Confidence 3466799999999998642 2 3478999999999999999885 37899999865 33222 689
Q ss_pred cEEEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 016157 181 DAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 221 (394)
Q Consensus 181 D~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~ 221 (394)
|+|++....++... ...++..+ ++|||||++++....
T Consensus 136 D~V~~d~~~~~~~~---~~~~~~~~-~~LkpgG~lv~~~~~ 172 (221)
T 3u81_A 136 DMVFLDHWKDRYLP---DTLLLEKC-GLLRKGTVLLADNVI 172 (221)
T ss_dssp SEEEECSCGGGHHH---HHHHHHHT-TCCCTTCEEEESCCC
T ss_pred EEEEEcCCcccchH---HHHHHHhc-cccCCCeEEEEeCCC
Confidence 99999987777644 45677777 999999999987654
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.28 E-value=1.5e-12 Score=117.76 Aligned_cols=97 Identities=15% Similarity=0.101 Sum_probs=76.3
Q ss_pred CCCEEEEEcCccCcccc--cCCC-cEEEEEeCCHHHHHHHHHc---------CCeEEEeecCCCCC--CCCC-ccEEEeh
Q 016157 122 SGSLVLDAGCGNGKYLG--LNPD-CFFVGCDISPSLIKICVDR---------GHEVLVADAVNLPY--RSDF-GDAAISI 186 (394)
Q Consensus 122 ~g~~VLDvGCG~G~~l~--~~~~-~~v~gvD~S~~~l~~a~~~---------~i~~~~~D~~~lp~--~~~~-fD~Vi~~ 186 (394)
++.+|||+|||+|.++. ...+ ..|+|+|+|+.|++.|+++ +++++.+|+.++.. .+++ ||+|++.
T Consensus 53 ~~~~vLDlGcGtG~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~ 132 (201)
T 2ift_A 53 HQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFLD 132 (201)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEEC
T ss_pred CCCeEEEcCCccCHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhhccCCCCCEEEEC
Confidence 56799999999999743 2223 5899999999999999875 46889999877532 3578 9999998
Q ss_pred hhhhhcCChhHHHHHHHHH--HhccccCcEEEEEEcCc
Q 016157 187 AVLHHLSTESRRKKAIEEL--VRVVKKGSLVLITVWAV 222 (394)
Q Consensus 187 ~vl~hl~~~~~~~~~L~ei--~r~LkpGG~lli~~~~~ 222 (394)
..++ ... ...+++.+ .++|||||.+++.....
T Consensus 133 ~~~~-~~~---~~~~l~~~~~~~~LkpgG~l~i~~~~~ 166 (201)
T 2ift_A 133 PPFH-FNL---AEQAISLLCENNWLKPNALIYVETEKD 166 (201)
T ss_dssp CCSS-SCH---HHHHHHHHHHTTCEEEEEEEEEEEESS
T ss_pred CCCC-Ccc---HHHHHHHHHhcCccCCCcEEEEEECCC
Confidence 7743 322 67888888 67899999999987554
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=99.27 E-value=5.8e-12 Score=123.42 Aligned_cols=99 Identities=21% Similarity=0.219 Sum_probs=79.0
Q ss_pred CCCCCEEEEEcCccCcccc----cCCCcEEEEEeCCHHHHHHHHH------cCCeEEEeecCCCCCCCCCccEEEehhhh
Q 016157 120 LPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVD------RGHEVLVADAVNLPYRSDFGDAAISIAVL 189 (394)
Q Consensus 120 l~~g~~VLDvGCG~G~~l~----~~~~~~v~gvD~S~~~l~~a~~------~~i~~~~~D~~~lp~~~~~fD~Vi~~~vl 189 (394)
++++.+|||||||+|.++. ..++..++++|++ .++..++. .+++++.+|+. .+++ .||+|++..++
T Consensus 182 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~~~~~~~~~~~~v~~~~~d~~-~~~p--~~D~v~~~~vl 257 (348)
T 3lst_A 182 FPATGTVADVGGGRGGFLLTVLREHPGLQGVLLDRA-EVVARHRLDAPDVAGRWKVVEGDFL-REVP--HADVHVLKRIL 257 (348)
T ss_dssp CCSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEECH-HHHTTCCCCCGGGTTSEEEEECCTT-TCCC--CCSEEEEESCG
T ss_pred ccCCceEEEECCccCHHHHHHHHHCCCCEEEEecCH-HHhhcccccccCCCCCeEEEecCCC-CCCC--CCcEEEEehhc
Confidence 5677899999999999753 3688899999994 44442111 14899999997 3444 89999999999
Q ss_pred hhcCChhHHHHHHHHHHhccccCcEEEEEEcCcc
Q 016157 190 HHLSTESRRKKAIEELVRVVKKGSLVLITVWAVE 223 (394)
Q Consensus 190 ~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~~ 223 (394)
||+++.+ ...+|+++.++|||||+++|..+...
T Consensus 258 h~~~d~~-~~~~L~~~~~~LkpgG~l~i~e~~~~ 290 (348)
T 3lst_A 258 HNWGDED-SVRILTNCRRVMPAHGRVLVIDAVVP 290 (348)
T ss_dssp GGSCHHH-HHHHHHHHHHTCCTTCEEEEEECCBC
T ss_pred cCCCHHH-HHHHHHHHHHhcCCCCEEEEEEeccC
Confidence 9998744 57999999999999999999886543
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=6.8e-14 Score=129.44 Aligned_cols=100 Identities=14% Similarity=0.102 Sum_probs=81.6
Q ss_pred HHcCCCCCCEEEEEcCccCccccc--CCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeecCCCCCCCCCccEEEe
Q 016157 116 FLNSLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAIS 185 (394)
Q Consensus 116 ~l~~l~~g~~VLDvGCG~G~~l~~--~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~lp~~~~~fD~Vi~ 185 (394)
.+....++.+|||+|||+|.++.. ..+..|+|+|+|+.+++.|+++ +++++++|+.+++ .+++||+|++
T Consensus 72 ~~~~~~~~~~vLD~gcG~G~~~~~la~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~D~v~~ 150 (241)
T 3gdh_A 72 RVSQSFKCDVVVDAFCGVGGNTIQFALTGMRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLA-SFLKADVVFL 150 (241)
T ss_dssp HHHHHSCCSEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHG-GGCCCSEEEE
T ss_pred HhhhccCCCEEEECccccCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhc-ccCCCCEEEE
Confidence 333344788999999999997532 3458999999999999999875 4789999999877 5689999999
Q ss_pred hhhhhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 016157 186 IAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 186 ~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~ 219 (394)
..+++|+.. ....+.++.++|+|||.+++..
T Consensus 151 ~~~~~~~~~---~~~~~~~~~~~L~pgG~~i~~~ 181 (241)
T 3gdh_A 151 SPPWGGPDY---ATAETFDIRTMMSPDGFEIFRL 181 (241)
T ss_dssp CCCCSSGGG---GGSSSBCTTTSCSSCHHHHHHH
T ss_pred CCCcCCcch---hhhHHHHHHhhcCCcceeHHHH
Confidence 999999876 3457889999999999966653
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=9.2e-12 Score=113.87 Aligned_cols=95 Identities=21% Similarity=0.204 Sum_probs=78.2
Q ss_pred CCCCCCEEEEEcCccCccccc-----CCCcEEEEEeCCHHHHHHHHHc------------CCeEEEeecCCCCCCCCCcc
Q 016157 119 SLPSGSLVLDAGCGNGKYLGL-----NPDCFFVGCDISPSLIKICVDR------------GHEVLVADAVNLPYRSDFGD 181 (394)
Q Consensus 119 ~l~~g~~VLDvGCG~G~~l~~-----~~~~~v~gvD~S~~~l~~a~~~------------~i~~~~~D~~~lp~~~~~fD 181 (394)
.+.++.+|||||||+|.++.. .+...|+|+|+++.+++.|+++ ++.++.+|+...+...+.||
T Consensus 74 ~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD 153 (226)
T 1i1n_A 74 QLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYD 153 (226)
T ss_dssp TSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCEE
T ss_pred hCCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCcccCCCcC
Confidence 467889999999999997532 3457999999999999998764 47889999987666678899
Q ss_pred EEEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCc
Q 016157 182 AAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAV 222 (394)
Q Consensus 182 ~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~ 222 (394)
+|++..+++++. +++.++|||||++++.+...
T Consensus 154 ~i~~~~~~~~~~---------~~~~~~LkpgG~lv~~~~~~ 185 (226)
T 1i1n_A 154 AIHVGAAAPVVP---------QALIDQLKPGGRLILPVGPA 185 (226)
T ss_dssp EEEECSBBSSCC---------HHHHHTEEEEEEEEEEESCT
T ss_pred EEEECCchHHHH---------HHHHHhcCCCcEEEEEEecC
Confidence 999998887663 46789999999999988654
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.27 E-value=1.2e-11 Score=108.19 Aligned_cols=95 Identities=19% Similarity=0.191 Sum_probs=79.7
Q ss_pred CCCCCCEEEEEcCccCccccc--CCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeecCCCCCCCCCccEEEehhhh
Q 016157 119 SLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFGDAAISIAVL 189 (394)
Q Consensus 119 ~l~~g~~VLDvGCG~G~~l~~--~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~lp~~~~~fD~Vi~~~vl 189 (394)
.+.++.+|||+|||+|.++.. .++..++|+|+|+.+++.|+++ +++++.+|+.+ ++++++||+|++..+
T Consensus 32 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~-~~~~~~~D~i~~~~~- 109 (183)
T 2yxd_A 32 NLNKDDVVVDVGCGSGGMTVEIAKRCKFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAED-VLDKLEFNKAFIGGT- 109 (183)
T ss_dssp CCCTTCEEEEESCCCSHHHHHHHTTSSEEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHH-HGGGCCCSEEEECSC-
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCccc-cccCCCCcEEEECCc-
Confidence 356778999999999997431 3778999999999999999886 47899999987 666789999999988
Q ss_pred hhcCChhHHHHHHHHHHhccccCcEEEEEEcCcc
Q 016157 190 HHLSTESRRKKAIEELVRVVKKGSLVLITVWAVE 223 (394)
Q Consensus 190 ~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~~ 223 (394)
.. ...+++++.++ |||.+++..+..+
T Consensus 110 ---~~---~~~~l~~~~~~--~gG~l~~~~~~~~ 135 (183)
T 2yxd_A 110 ---KN---IEKIIEILDKK--KINHIVANTIVLE 135 (183)
T ss_dssp ---SC---HHHHHHHHHHT--TCCEEEEEESCHH
T ss_pred ---cc---HHHHHHHHhhC--CCCEEEEEecccc
Confidence 33 67899999998 9999999986543
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.26 E-value=1.5e-11 Score=114.45 Aligned_cols=96 Identities=15% Similarity=0.151 Sum_probs=81.8
Q ss_pred CCCCCCEEEEEcCccCcccc----c-CCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeecCCCCCCCCCccEEEe
Q 016157 119 SLPSGSLVLDAGCGNGKYLG----L-NPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAIS 185 (394)
Q Consensus 119 ~l~~g~~VLDvGCG~G~~l~----~-~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~lp~~~~~fD~Vi~ 185 (394)
.+.++.+|||+|||+|.++. . .++..++|+|+++.+++.|+++ ++++..+|+.+.++++++||+|++
T Consensus 93 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~~~~~D~v~~ 172 (258)
T 2pwy_A 93 DLAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEAELEEAAYDGVAL 172 (258)
T ss_dssp TCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGCCCCTTCEEEEEE
T ss_pred CCCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhcCCCCCCcCEEEE
Confidence 46788999999999998743 2 4578999999999999999875 478999999988787789999998
Q ss_pred hhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCc
Q 016157 186 IAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAV 222 (394)
Q Consensus 186 ~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~ 222 (394)
++++ +..+|+++.++|||||++++..+..
T Consensus 173 -----~~~~---~~~~l~~~~~~L~~gG~l~~~~~~~ 201 (258)
T 2pwy_A 173 -----DLME---PWKVLEKAALALKPDRFLVAYLPNI 201 (258)
T ss_dssp -----ESSC---GGGGHHHHHHHEEEEEEEEEEESCH
T ss_pred -----CCcC---HHHHHHHHHHhCCCCCEEEEEeCCH
Confidence 4555 5689999999999999999998764
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=1e-11 Score=109.48 Aligned_cols=97 Identities=15% Similarity=0.132 Sum_probs=78.6
Q ss_pred CCCCCCEEEEEcCccCccccc--CCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeecCCCCCCC-CCccEEEehh
Q 016157 119 SLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRS-DFGDAAISIA 187 (394)
Q Consensus 119 ~l~~g~~VLDvGCG~G~~l~~--~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~lp~~~-~~fD~Vi~~~ 187 (394)
.+.++.+|||+|||+|.++.. .....++|+|+|+.+++.|+++ ++.++.+|+.+ +++. +.||+|++..
T Consensus 30 ~~~~~~~vldiG~G~G~~~~~l~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~D~v~~~~ 108 (192)
T 1l3i_A 30 EPGKNDVAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPE-ALCKIPDIDIAVVGG 108 (192)
T ss_dssp CCCTTCEEEEESCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHH-HHTTSCCEEEEEESC
T ss_pred CCCCCCEEEEECCCCCHHHHHHHHhcCEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHH-hcccCCCCCEEEECC
Confidence 467788999999999997432 2237999999999999999874 56888999876 2233 5899999988
Q ss_pred hhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCc
Q 016157 188 VLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAV 222 (394)
Q Consensus 188 vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~ 222 (394)
+++| ...+++++.++|+|||.+++..+..
T Consensus 109 ~~~~------~~~~l~~~~~~l~~gG~l~~~~~~~ 137 (192)
T 1l3i_A 109 SGGE------LQEILRIIKDKLKPGGRIIVTAILL 137 (192)
T ss_dssp CTTC------HHHHHHHHHHTEEEEEEEEEEECBH
T ss_pred chHH------HHHHHHHHHHhcCCCcEEEEEecCc
Confidence 7754 4789999999999999999988653
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.26 E-value=6.1e-12 Score=118.07 Aligned_cols=103 Identities=16% Similarity=0.176 Sum_probs=78.3
Q ss_pred cCCC-CCCEEEEEcCccCcccc---cCCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeecCCCC--CCCCCccEE
Q 016157 118 NSLP-SGSLVLDAGCGNGKYLG---LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLP--YRSDFGDAA 183 (394)
Q Consensus 118 ~~l~-~g~~VLDvGCG~G~~l~---~~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~lp--~~~~~fD~V 183 (394)
..++ ++.+|||+|||+|.++. ......|+|+|+++.+++.|+++ +++++++|+.+++ ++.++||+|
T Consensus 44 ~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~~~~~~fD~I 123 (259)
T 3lpm_A 44 SYLPIRKGKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDLIPKERADIV 123 (259)
T ss_dssp CCCCSSCCEEEETTCTTTHHHHHHHTTCCCEEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGTSCTTCEEEE
T ss_pred hcCCCCCCEEEEcCCchhHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhhhccCCccEE
Confidence 3456 78899999999999743 12233999999999999999886 3789999999876 457899999
Q ss_pred Eehhhhhhc-----CCh------------hHHHHHHHHHHhccccCcEEEEEEc
Q 016157 184 ISIAVLHHL-----STE------------SRRKKAIEELVRVVKKGSLVLITVW 220 (394)
Q Consensus 184 i~~~vl~hl-----~~~------------~~~~~~L~ei~r~LkpGG~lli~~~ 220 (394)
+++..+.+. .+. .....+++.+.++|||||++++...
T Consensus 124 i~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 177 (259)
T 3lpm_A 124 TCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVHR 177 (259)
T ss_dssp EECCCC-----------------------HHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred EECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEEc
Confidence 996443322 110 1246799999999999999999653
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.25 E-value=8.1e-12 Score=114.33 Aligned_cols=94 Identities=19% Similarity=0.298 Sum_probs=78.3
Q ss_pred CCCCCCEEEEEcCccCccccc-----C----CCcEEEEEeCCHHHHHHHHHc------------CCeEEEeecCCCC---
Q 016157 119 SLPSGSLVLDAGCGNGKYLGL-----N----PDCFFVGCDISPSLIKICVDR------------GHEVLVADAVNLP--- 174 (394)
Q Consensus 119 ~l~~g~~VLDvGCG~G~~l~~-----~----~~~~v~gvD~S~~~l~~a~~~------------~i~~~~~D~~~lp--- 174 (394)
.+.++.+|||||||+|.++.. . +...|+|+|+++.+++.|+++ +++++.+|+....
T Consensus 77 ~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~ 156 (227)
T 2pbf_A 77 VLKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEE 156 (227)
T ss_dssp TSCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHH
T ss_pred hCCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhccccc
Confidence 567889999999999986431 2 456999999999999999875 3789999998865
Q ss_pred -CCCCCccEEEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 016157 175 -YRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 221 (394)
Q Consensus 175 -~~~~~fD~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~ 221 (394)
...+.||+|++..+++++. +++.++|||||++++.++.
T Consensus 157 ~~~~~~fD~I~~~~~~~~~~---------~~~~~~LkpgG~lv~~~~~ 195 (227)
T 2pbf_A 157 KKELGLFDAIHVGASASELP---------EILVDLLAENGKLIIPIEE 195 (227)
T ss_dssp HHHHCCEEEEEECSBBSSCC---------HHHHHHEEEEEEEEEEEEE
T ss_pred CccCCCcCEEEECCchHHHH---------HHHHHhcCCCcEEEEEEcc
Confidence 5568899999999888763 5678999999999999864
|
| >4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=1.8e-12 Score=135.42 Aligned_cols=101 Identities=23% Similarity=0.291 Sum_probs=82.1
Q ss_pred CCCCEEEEEcCccCcccc--cCCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeecCCC--CCCCCCccEEEehhhh
Q 016157 121 PSGSLVLDAGCGNGKYLG--LNPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNL--PYRSDFGDAAISIAVL 189 (394)
Q Consensus 121 ~~g~~VLDvGCG~G~~l~--~~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~l--p~~~~~fD~Vi~~~vl 189 (394)
..+.+|||||||.|.++. +..|+.|+|+|+|+.+++.|+.+ ++++.+++++++ ++.+++||+|+|..+|
T Consensus 65 ~~~~~vLDvGCG~G~~~~~la~~ga~V~giD~~~~~i~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~e~~ 144 (569)
T 4azs_A 65 GRPLNVLDLGCAQGFFSLSLASKGATIVGIDFQQENINVCRALAEENPDFAAEFRVGRIEEVIAALEEGEFDLAIGLSVF 144 (569)
T ss_dssp TSCCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTSTTSEEEEEECCHHHHHHHCCTTSCSEEEEESCH
T ss_pred CCCCeEEEECCCCcHHHHHHHhCCCEEEEECCCHHHHHHHHHHHHhcCCCceEEEECCHHHHhhhccCCCccEEEECcch
Confidence 456799999999999754 25688999999999999999865 368999999987 4567899999999999
Q ss_pred hhcCChhHHHHHHHHHHhccccCcEEEEEEcCc
Q 016157 190 HHLSTESRRKKAIEELVRVVKKGSLVLITVWAV 222 (394)
Q Consensus 190 ~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~ 222 (394)
||++++. ....+..+.+.|+++|..++..+..
T Consensus 145 ehv~~~~-~~~~~~~~~~tl~~~~~~~~~~~~~ 176 (569)
T 4azs_A 145 HHIVHLH-GIDEVKRLLSRLADVTQAVILELAV 176 (569)
T ss_dssp HHHHHHH-CHHHHHHHHHHHHHHSSEEEEECCC
T ss_pred hcCCCHH-HHHHHHHHHHHhccccceeeEEecc
Confidence 9998754 2344566888899998888777654
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 | Back alignment and structure |
|---|
Probab=99.25 E-value=9.8e-12 Score=120.40 Aligned_cols=95 Identities=17% Similarity=0.166 Sum_probs=79.0
Q ss_pred CCCCCCEEEEEcCccCcccc----cCC-CcEEEEEeCCHHHHHHHHHc-------CCeEEEeecCCCCCCCCCccEEEeh
Q 016157 119 SLPSGSLVLDAGCGNGKYLG----LNP-DCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFGDAAISI 186 (394)
Q Consensus 119 ~l~~g~~VLDvGCG~G~~l~----~~~-~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~lp~~~~~fD~Vi~~ 186 (394)
.+.++.+|||||||+|.++. ..+ ...|+|+|+|+.+++.|+++ +++++.+|+.+.+..+++||+|++.
T Consensus 72 ~~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~~~~~~~~~~fD~Iv~~ 151 (317)
T 1dl5_A 72 GLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEFSPYDVIFVT 151 (317)
T ss_dssp TCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEEEEEEC
T ss_pred CCCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEECChhhccccCCCeEEEEEc
Confidence 45788999999999999753 223 46799999999999999876 4789999998865556889999999
Q ss_pred hhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCc
Q 016157 187 AVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAV 222 (394)
Q Consensus 187 ~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~ 222 (394)
.+++|+. +++.++|||||++++.+...
T Consensus 152 ~~~~~~~---------~~~~~~LkpgG~lvi~~~~~ 178 (317)
T 1dl5_A 152 VGVDEVP---------ETWFTQLKEGGRVIVPINLK 178 (317)
T ss_dssp SBBSCCC---------HHHHHHEEEEEEEEEEBCBG
T ss_pred CCHHHHH---------HHHHHhcCCCcEEEEEECCC
Confidence 9999986 35788999999999986543
|
| >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.24 E-value=2e-12 Score=112.37 Aligned_cols=100 Identities=16% Similarity=0.124 Sum_probs=76.0
Q ss_pred CCCCCEEEEEcCccCccccc--CCCcEEEEEeCCHHHHHHHHHc------CCeEEEeecCCC-C-CC--CCCccEEEehh
Q 016157 120 LPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR------GHEVLVADAVNL-P-YR--SDFGDAAISIA 187 (394)
Q Consensus 120 l~~g~~VLDvGCG~G~~l~~--~~~~~v~gvD~S~~~l~~a~~~------~i~~~~~D~~~l-p-~~--~~~fD~Vi~~~ 187 (394)
++++.+|||+|||+|.++.. ..+..++|+|+|+.+++.|+++ +++++++|+.+. + .. .++||+|++..
T Consensus 39 ~~~~~~vLD~GcG~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~i~~~~ 118 (171)
T 1ws6_A 39 YPRRGRFLDPFAGSGAVGLEAASEGWEAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMAP 118 (171)
T ss_dssp CTTCCEEEEETCSSCHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEECC
T ss_pred ccCCCeEEEeCCCcCHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHcCCceEEEeccHHHHHHhhhccCCceEEEEECC
Confidence 34678999999999997532 2344599999999999999876 588999998773 2 11 24899999987
Q ss_pred hhhhcCChhHHHHHHHHHH--hccccCcEEEEEEcCccc
Q 016157 188 VLHHLSTESRRKKAIEELV--RVVKKGSLVLITVWAVEQ 224 (394)
Q Consensus 188 vl~hl~~~~~~~~~L~ei~--r~LkpGG~lli~~~~~~~ 224 (394)
.++ .. ...+++.+. ++|||||.+++.......
T Consensus 119 ~~~--~~---~~~~~~~~~~~~~L~~gG~~~~~~~~~~~ 152 (171)
T 1ws6_A 119 PYA--MD---LAALFGELLASGLVEAGGLYVLQHPKDLY 152 (171)
T ss_dssp CTT--SC---TTHHHHHHHHHTCEEEEEEEEEEEETTSC
T ss_pred CCc--hh---HHHHHHHHHhhcccCCCcEEEEEeCCccC
Confidence 765 33 345566666 999999999998876543
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=99.24 E-value=1e-11 Score=115.68 Aligned_cols=97 Identities=18% Similarity=0.322 Sum_probs=81.3
Q ss_pred CCCCCCEEEEEcCccCcccc----c-CCCcEEEEEeCCHHHHHHHHHc-------C-CeEEEeecCCCCCCCCCccEEEe
Q 016157 119 SLPSGSLVLDAGCGNGKYLG----L-NPDCFFVGCDISPSLIKICVDR-------G-HEVLVADAVNLPYRSDFGDAAIS 185 (394)
Q Consensus 119 ~l~~g~~VLDvGCG~G~~l~----~-~~~~~v~gvD~S~~~l~~a~~~-------~-i~~~~~D~~~lp~~~~~fD~Vi~ 185 (394)
.+.++.+|||+|||+|.++. . .++..++|+|+++.+++.|+++ + ++++.+|+.+. +++++||+|++
T Consensus 90 ~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~~D~v~~ 168 (255)
T 3mb5_A 90 GISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEG-IEEENVDHVIL 168 (255)
T ss_dssp TCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGC-CCCCSEEEEEE
T ss_pred CCCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhc-cCCCCcCEEEE
Confidence 46788999999999999753 2 5688999999999999999876 3 78999999864 66788999998
Q ss_pred hhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCccc
Q 016157 186 IAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQ 224 (394)
Q Consensus 186 ~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~~~ 224 (394)
++++ +..+++++.++|||||++++.....++
T Consensus 169 -----~~~~---~~~~l~~~~~~L~~gG~l~~~~~~~~~ 199 (255)
T 3mb5_A 169 -----DLPQ---PERVVEHAAKALKPGGFFVAYTPCSNQ 199 (255)
T ss_dssp -----CSSC---GGGGHHHHHHHEEEEEEEEEEESSHHH
T ss_pred -----CCCC---HHHHHHHHHHHcCCCCEEEEEECCHHH
Confidence 3555 568999999999999999998866543
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.24 E-value=4.3e-12 Score=124.31 Aligned_cols=100 Identities=23% Similarity=0.264 Sum_probs=80.6
Q ss_pred CCCCEEEEEcCccCcccc----cCCCcEEEEEeCCHHHHHHHHHc------CCeEEEeecCCCCCCCCCccEEEehhhhh
Q 016157 121 PSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR------GHEVLVADAVNLPYRSDFGDAAISIAVLH 190 (394)
Q Consensus 121 ~~g~~VLDvGCG~G~~l~----~~~~~~v~gvD~S~~~l~~a~~~------~i~~~~~D~~~lp~~~~~fD~Vi~~~vl~ 190 (394)
.++.+|||+|||+|.++. ..+...++|+|+|+.+++.|+++ ..+++.+|+...+ +++||+|+++.++|
T Consensus 195 ~~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~d~~~~~--~~~fD~Iv~~~~~~ 272 (343)
T 2pjd_A 195 HTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVEGEVFASNVFSEV--KGRFDMIISNPPFH 272 (343)
T ss_dssp TCCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTC--CSCEEEEEECCCCC
T ss_pred CCCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCEEEEccccccc--cCCeeEEEECCCcc
Confidence 356799999999999753 35667999999999999999886 3578888887654 67899999999887
Q ss_pred hcC--ChhHHHHHHHHHHhccccCcEEEEEEcCc
Q 016157 191 HLS--TESRRKKAIEELVRVVKKGSLVLITVWAV 222 (394)
Q Consensus 191 hl~--~~~~~~~~L~ei~r~LkpGG~lli~~~~~ 222 (394)
+.. .......+|+++.++|||||.+++.....
T Consensus 273 ~g~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 306 (343)
T 2pjd_A 273 DGMQTSLDAAQTLIRGAVRHLNSGGELRIVANAF 306 (343)
T ss_dssp SSSHHHHHHHHHHHHHHGGGEEEEEEEEEEEETT
T ss_pred cCccCCHHHHHHHHHHHHHhCCCCcEEEEEEcCC
Confidence 521 11226899999999999999999987543
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.24 E-value=1e-11 Score=117.23 Aligned_cols=98 Identities=17% Similarity=0.280 Sum_probs=82.5
Q ss_pred CCCCCCEEEEEcCccCcccc-----cCCCcEEEEEeCCHHHHHHHHHc----------CCeEEEeecCCCCCCCCCccEE
Q 016157 119 SLPSGSLVLDAGCGNGKYLG-----LNPDCFFVGCDISPSLIKICVDR----------GHEVLVADAVNLPYRSDFGDAA 183 (394)
Q Consensus 119 ~l~~g~~VLDvGCG~G~~l~-----~~~~~~v~gvD~S~~~l~~a~~~----------~i~~~~~D~~~lp~~~~~fD~V 183 (394)
.+.++.+|||+|||+|.++. ..++..++|+|+++.+++.|+++ +++++.+|+.+.++.++.||+|
T Consensus 96 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~~~~~~~~D~v 175 (280)
T 1i9g_A 96 DIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSELPDGSVDRA 175 (280)
T ss_dssp TCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCCCTTCEEEE
T ss_pred CCCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhcCCCCCceeEE
Confidence 46788999999999998743 24678999999999999998764 3688999999988778899999
Q ss_pred EehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCccc
Q 016157 184 ISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQ 224 (394)
Q Consensus 184 i~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~~~ 224 (394)
++ ++++ +..+|+++.++|||||++++.++..++
T Consensus 176 ~~-----~~~~---~~~~l~~~~~~L~pgG~l~~~~~~~~~ 208 (280)
T 1i9g_A 176 VL-----DMLA---PWEVLDAVSRLLVAGGVLMVYVATVTQ 208 (280)
T ss_dssp EE-----ESSC---GGGGHHHHHHHEEEEEEEEEEESSHHH
T ss_pred EE-----CCcC---HHHHHHHHHHhCCCCCEEEEEeCCHHH
Confidence 98 4455 568999999999999999999876543
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* | Back alignment and structure |
|---|
Probab=99.24 E-value=2e-11 Score=113.34 Aligned_cols=96 Identities=19% Similarity=0.162 Sum_probs=72.8
Q ss_pred CCCCCEEEEEcCccCcccc-----cCCCcEEEEEeCCHHHH----HHHHHc-CCeEEEeecCCCC---CCCCCccEEEeh
Q 016157 120 LPSGSLVLDAGCGNGKYLG-----LNPDCFFVGCDISPSLI----KICVDR-GHEVLVADAVNLP---YRSDFGDAAISI 186 (394)
Q Consensus 120 l~~g~~VLDvGCG~G~~l~-----~~~~~~v~gvD~S~~~l----~~a~~~-~i~~~~~D~~~lp---~~~~~fD~Vi~~ 186 (394)
+.+|.+|||+|||+|.++. ..+...|+|+|+|+.|+ +.|+++ ++.++++|+.... ...++||+|++.
T Consensus 74 l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r~nv~~i~~Da~~~~~~~~~~~~~D~I~~d 153 (232)
T 3id6_C 74 IRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRRPNIFPLLADARFPQSYKSVVENVDVLYVD 153 (232)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHCTTEEEEECCTTCGGGTTTTCCCEEEEEEC
T ss_pred CCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCeEEEEcccccchhhhccccceEEEEec
Confidence 6789999999999999753 25677999999999875 445554 8999999998643 124689999987
Q ss_pred hhhhhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 016157 187 AVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (394)
Q Consensus 187 ~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~ 220 (394)
... ++ +...++..+.++|||||+|++...
T Consensus 154 ~a~---~~--~~~il~~~~~~~LkpGG~lvisik 182 (232)
T 3id6_C 154 IAQ---PD--QTDIAIYNAKFFLKVNGDMLLVIK 182 (232)
T ss_dssp CCC---TT--HHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred CCC---hh--HHHHHHHHHHHhCCCCeEEEEEEc
Confidence 543 23 234455666679999999999864
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.24 E-value=1e-11 Score=117.68 Aligned_cols=95 Identities=17% Similarity=0.236 Sum_probs=80.4
Q ss_pred CCCCCCEEEEEcCccCcccc----c-CCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeecCCCCCCCCCccEEEe
Q 016157 119 SLPSGSLVLDAGCGNGKYLG----L-NPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAIS 185 (394)
Q Consensus 119 ~l~~g~~VLDvGCG~G~~l~----~-~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~lp~~~~~fD~Vi~ 185 (394)
.+.++.+|||+|||+|.++. . .++..++|+|+++.+++.|+++ +++++.+|+.+ ++++++||+|++
T Consensus 107 ~~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~-~~~~~~fD~Vi~ 185 (275)
T 1yb2_A 107 GLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIAD-FISDQMYDAVIA 185 (275)
T ss_dssp CCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTT-CCCSCCEEEEEE
T ss_pred CCCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECchhc-cCcCCCccEEEE
Confidence 46788999999999998643 2 4678999999999999998875 36889999988 566788999998
Q ss_pred hhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCc
Q 016157 186 IAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAV 222 (394)
Q Consensus 186 ~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~ 222 (394)
|+++ +..+|+++.++|||||++++.+...
T Consensus 186 -----~~~~---~~~~l~~~~~~LkpgG~l~i~~~~~ 214 (275)
T 1yb2_A 186 -----DIPD---PWNHVQKIASMMKPGSVATFYLPNF 214 (275)
T ss_dssp -----CCSC---GGGSHHHHHHTEEEEEEEEEEESSH
T ss_pred -----cCcC---HHHHHHHHHHHcCCCCEEEEEeCCH
Confidence 5666 5789999999999999999998764
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.23 E-value=1.1e-11 Score=114.45 Aligned_cols=95 Identities=15% Similarity=0.145 Sum_probs=77.1
Q ss_pred CCCCCEEEEEcCccCcccc----cCCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeecCCC-C-CCCCCccEEEe
Q 016157 120 LPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNL-P-YRSDFGDAAIS 185 (394)
Q Consensus 120 l~~g~~VLDvGCG~G~~l~----~~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~l-p-~~~~~fD~Vi~ 185 (394)
+.++.+|||||||+|..+. ..++..|+|+|+++.+++.|+++ +++++.+|+.+. + ..+++||+|++
T Consensus 69 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~ 148 (232)
T 3ntv_A 69 MNNVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVNDKVYDMIFI 148 (232)
T ss_dssp HHTCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHTTSCEEEEEE
T ss_pred hcCCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhccCCccEEEE
Confidence 4467899999999998643 34678999999999999999875 478999999774 3 33689999997
Q ss_pred hhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 016157 186 IAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (394)
Q Consensus 186 ~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~ 220 (394)
... ... ...+++++.++|||||++++...
T Consensus 149 ~~~---~~~---~~~~l~~~~~~LkpgG~lv~d~~ 177 (232)
T 3ntv_A 149 DAA---KAQ---SKKFFEIYTPLLKHQGLVITDNV 177 (232)
T ss_dssp ETT---SSS---HHHHHHHHGGGEEEEEEEEEECT
T ss_pred cCc---HHH---HHHHHHHHHHhcCCCeEEEEeeC
Confidence 643 222 67899999999999999988654
|
| >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E | Back alignment and structure |
|---|
Probab=99.23 E-value=1.4e-11 Score=114.70 Aligned_cols=95 Identities=21% Similarity=0.338 Sum_probs=75.5
Q ss_pred CCCCCEEEEEcCccCcccc----cCCCcEEEEEeCCHHHHHHHHHc---------------CCeEEEeecCC-CC--CCC
Q 016157 120 LPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR---------------GHEVLVADAVN-LP--YRS 177 (394)
Q Consensus 120 l~~g~~VLDvGCG~G~~l~----~~~~~~v~gvD~S~~~l~~a~~~---------------~i~~~~~D~~~-lp--~~~ 177 (394)
++++.+|||||||+|.++. ..+...++|+|+|+.+++.|+++ ++.++.+|+.+ ++ +..
T Consensus 47 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~~ 126 (246)
T 2vdv_E 47 MTKKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFEK 126 (246)
T ss_dssp BSCCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSCT
T ss_pred CCCCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhccc
Confidence 4567899999999999753 35677999999999999988652 57899999987 66 667
Q ss_pred CCccEEEehhhhhhcCChhH----------HHHHHHHHHhccccCcEEEEEE
Q 016157 178 DFGDAAISIAVLHHLSTESR----------RKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 178 ~~fD~Vi~~~vl~hl~~~~~----------~~~~L~ei~r~LkpGG~lli~~ 219 (394)
+++|.|+... +++.. ...++.++.++|||||.|++.+
T Consensus 127 ~~~d~v~~~~-----p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~t 173 (246)
T 2vdv_E 127 GQLSKMFFCF-----PDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTIT 173 (246)
T ss_dssp TCEEEEEEES-----CCCC------CSSCCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccCEEEEEC-----CCcccccchhHHhhccHHHHHHHHHHcCCCCEEEEEe
Confidence 8999998542 33210 0489999999999999999965
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.22 E-value=1.5e-11 Score=114.94 Aligned_cols=101 Identities=14% Similarity=0.085 Sum_probs=78.1
Q ss_pred HHHcCCCCCCEEEEEcCccCccc----ccCC-CcEEEEEeCCHHHHHHHHHc--------CCeEEEeecCC-CCCC--CC
Q 016157 115 TFLNSLPSGSLVLDAGCGNGKYL----GLNP-DCFFVGCDISPSLIKICVDR--------GHEVLVADAVN-LPYR--SD 178 (394)
Q Consensus 115 ~~l~~l~~g~~VLDvGCG~G~~l----~~~~-~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~-lp~~--~~ 178 (394)
..+..+.++.+|||||||+|..+ ...+ +..|+|+|+++.+++.|+++ +++++.+|+.+ ++.. .+
T Consensus 56 ~~l~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~~~ 135 (248)
T 3tfw_A 56 ALLVRLTQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGECP 135 (248)
T ss_dssp HHHHHHHTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCSCC
T ss_pred HHHHhhcCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCCCC
Confidence 33333456789999999999864 2344 78999999999999999876 47899999876 3332 34
Q ss_pred CccEEEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 016157 179 FGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 221 (394)
Q Consensus 179 ~fD~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~ 221 (394)
+||+|++.... .....+++++.++|||||++++....
T Consensus 136 ~fD~V~~d~~~------~~~~~~l~~~~~~LkpGG~lv~~~~~ 172 (248)
T 3tfw_A 136 AFDLIFIDADK------PNNPHYLRWALRYSRPGTLIIGDNVV 172 (248)
T ss_dssp CCSEEEECSCG------GGHHHHHHHHHHTCCTTCEEEEECCS
T ss_pred CeEEEEECCch------HHHHHHHHHHHHhcCCCeEEEEeCCC
Confidence 89999986532 12567999999999999999987654
|
| >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.22 E-value=7.3e-12 Score=113.35 Aligned_cols=96 Identities=11% Similarity=0.076 Sum_probs=76.0
Q ss_pred CCCEEEEEcCccCcccc--cCCC-cEEEEEeCCHHHHHHHHHc-------CCeEEEeecCC-CCCCCCCccEEEehhhhh
Q 016157 122 SGSLVLDAGCGNGKYLG--LNPD-CFFVGCDISPSLIKICVDR-------GHEVLVADAVN-LPYRSDFGDAAISIAVLH 190 (394)
Q Consensus 122 ~g~~VLDvGCG~G~~l~--~~~~-~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~-lp~~~~~fD~Vi~~~vl~ 190 (394)
++.+|||+|||+|.++. ...+ ..|+|+|+|+.|++.|+++ +++++++|+.+ ++...++||+|++...++
T Consensus 54 ~~~~vLDlgcG~G~~~~~l~~~~~~~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~~~~~~~fD~V~~~~p~~ 133 (202)
T 2fpo_A 54 VDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPPFR 133 (202)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCSSS
T ss_pred CCCeEEEeCCCcCHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHhhcCCCCCEEEECCCCC
Confidence 56799999999999743 2233 4899999999999999876 47899999877 555567899999987643
Q ss_pred hcCChhHHHHHHHHHHh--ccccCcEEEEEEcC
Q 016157 191 HLSTESRRKKAIEELVR--VVKKGSLVLITVWA 221 (394)
Q Consensus 191 hl~~~~~~~~~L~ei~r--~LkpGG~lli~~~~ 221 (394)
... ...+++.+.+ +|||||++++....
T Consensus 134 -~~~---~~~~l~~l~~~~~L~pgG~l~i~~~~ 162 (202)
T 2fpo_A 134 -RGL---LEETINLLEDNGWLADEALIYVESEV 162 (202)
T ss_dssp -TTT---HHHHHHHHHHTTCEEEEEEEEEEEEG
T ss_pred -CCc---HHHHHHHHHhcCccCCCcEEEEEECC
Confidence 333 5678888865 59999999998754
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=99.21 E-value=2.1e-11 Score=118.19 Aligned_cols=109 Identities=14% Similarity=0.168 Sum_probs=82.4
Q ss_pred HcCCCCCCEEEEEcCccCcccc----c-CCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeecCCCCCCCCCccEEE
Q 016157 117 LNSLPSGSLVLDAGCGNGKYLG----L-NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFGDAAI 184 (394)
Q Consensus 117 l~~l~~g~~VLDvGCG~G~~l~----~-~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~lp~~~~~fD~Vi 184 (394)
+..+.++.+|||+|||+|..+. . .+...|+|+|+|+.+++.++++ ++.++++|+..++..++.||+|+
T Consensus 113 ~l~~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~D~~~~~~~~~~fD~Il 192 (315)
T 1ixk_A 113 ALDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEFDKIL 192 (315)
T ss_dssp HHCCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCCEEEEE
T ss_pred HhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCCeEEEEECChhhcccccccCCEEE
Confidence 3457788999999999998643 2 3457999999999999999876 46889999988775567899999
Q ss_pred eh------hhhhhcCCh------h-------HHHHHHHHHHhccccCcEEEEEEcCccch
Q 016157 185 SI------AVLHHLSTE------S-------RRKKAIEELVRVVKKGSLVLITVWAVEQE 225 (394)
Q Consensus 185 ~~------~vl~hl~~~------~-------~~~~~L~ei~r~LkpGG~lli~~~~~~~~ 225 (394)
+. .++++.++. + ....+|+++.++|||||++++++.+....
T Consensus 193 ~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs~~~~ 252 (315)
T 1ixk_A 193 LDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEPE 252 (315)
T ss_dssp EECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCCGG
T ss_pred EeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCCCChH
Confidence 83 334433220 0 12589999999999999999998766443
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.21 E-value=2.5e-11 Score=114.35 Aligned_cols=101 Identities=13% Similarity=0.018 Sum_probs=78.0
Q ss_pred CCCCCCEEEEEcCccCcccc----cCCCcEEEEEeCCHHHHHHHHHc--C---------CeEEEeecCCC-------CCC
Q 016157 119 SLPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR--G---------HEVLVADAVNL-------PYR 176 (394)
Q Consensus 119 ~l~~g~~VLDvGCG~G~~l~----~~~~~~v~gvD~S~~~l~~a~~~--~---------i~~~~~D~~~l-------p~~ 176 (394)
...++.+|||+|||+|.++. ..++..++|+|+++.+++.|+++ . ++++++|+.++ ++.
T Consensus 33 ~~~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~~~~ 112 (260)
T 2ozv_A 33 ADDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEAGLP 112 (260)
T ss_dssp CCCSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHTTCC
T ss_pred cccCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhhccC
Confidence 35577899999999999742 35678999999999999999875 2 67899999887 256
Q ss_pred CCCccEEEehhhhh----------------hcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 016157 177 SDFGDAAISIAVLH----------------HLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (394)
Q Consensus 177 ~~~fD~Vi~~~vl~----------------hl~~~~~~~~~L~ei~r~LkpGG~lli~~~ 220 (394)
+++||+|+++-.+. |..... ...+++.+.++|||||+|++...
T Consensus 113 ~~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~-~~~~l~~~~~~LkpgG~l~~~~~ 171 (260)
T 2ozv_A 113 DEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGL-FEDWIRTASAIMVSGGQLSLISR 171 (260)
T ss_dssp TTCEEEEEECCCC---------------------CC-HHHHHHHHHHHEEEEEEEEEEEC
T ss_pred CCCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCC-HHHHHHHHHHHcCCCCEEEEEEc
Confidence 78999999973222 111111 57899999999999999998753
|
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.21 E-value=9.4e-12 Score=112.01 Aligned_cols=103 Identities=17% Similarity=0.209 Sum_probs=75.4
Q ss_pred cCCCCCCEEEEEcCccCccccc--CCCcEEEEEeCCHHHHHHHHHcCCeEEEeecCCCCCC-------C----CCccEEE
Q 016157 118 NSLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYR-------S----DFGDAAI 184 (394)
Q Consensus 118 ~~l~~g~~VLDvGCG~G~~l~~--~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~lp~~-------~----~~fD~Vi 184 (394)
..++++.+|||+|||+|.++.. ..+..|+|+|+++.. ...+++++++|+.+.+.. . ++||+|+
T Consensus 21 ~~~~~g~~VLDlG~G~G~~s~~la~~~~~V~gvD~~~~~----~~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~D~Vl 96 (191)
T 3dou_A 21 RVVRKGDAVIEIGSSPGGWTQVLNSLARKIISIDLQEME----EIAGVRFIRCDIFKETIFDDIDRALREEGIEKVDDVV 96 (191)
T ss_dssp CCSCTTCEEEEESCTTCHHHHHHTTTCSEEEEEESSCCC----CCTTCEEEECCTTSSSHHHHHHHHHHHHTCSSEEEEE
T ss_pred CCCCCCCEEEEEeecCCHHHHHHHHcCCcEEEEeccccc----cCCCeEEEEccccCHHHHHHHHHHhhcccCCcceEEe
Confidence 3467899999999999987532 237799999999752 113799999999886521 1 4899999
Q ss_pred ehhh--------hhhcCChhHHHHHHHHHHhccccCcEEEEEEcCccc
Q 016157 185 SIAV--------LHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQ 224 (394)
Q Consensus 185 ~~~v--------l~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~~~ 224 (394)
+... ..|.........+|+.+.++|||||.|++.+|..+.
T Consensus 97 sd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~~~~~ 144 (191)
T 3dou_A 97 SDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQFQGDM 144 (191)
T ss_dssp ECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECSTH
T ss_pred cCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEcCCCC
Confidence 9542 222221122467899999999999999999986543
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=2.9e-11 Score=114.46 Aligned_cols=98 Identities=17% Similarity=0.234 Sum_probs=78.2
Q ss_pred CCCCEEEEEcCccCcccc----cCCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeecCCCCCCCCCccEEEeh---
Q 016157 121 PSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFGDAAISI--- 186 (394)
Q Consensus 121 ~~g~~VLDvGCG~G~~l~----~~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~lp~~~~~fD~Vi~~--- 186 (394)
.++.+|||+|||+|.++. ..++..++|+|+|+.+++.|+++ +++++++|+.+. +++++||+|+++
T Consensus 108 ~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~v~~~~~d~~~~-~~~~~fD~Iv~npPy 186 (276)
T 2b3t_A 108 EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSA-LAGQQFAMIVSNPPY 186 (276)
T ss_dssp SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGG-GTTCCEEEEEECCCC
T ss_pred cCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEcchhhh-cccCCccEEEECCCC
Confidence 567899999999999643 35778999999999999999876 478999998873 346789999997
Q ss_pred ----------hhhhhcCCh---------hHHHHHHHHHHhccccCcEEEEEE
Q 016157 187 ----------AVLHHLSTE---------SRRKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 187 ----------~vl~hl~~~---------~~~~~~L~ei~r~LkpGG~lli~~ 219 (394)
.+++|-+.. .....+++++.++|||||++++..
T Consensus 187 ~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~ 238 (276)
T 2b3t_A 187 IDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEH 238 (276)
T ss_dssp BCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred CCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 344444321 125789999999999999999874
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.21 E-value=1.7e-11 Score=112.87 Aligned_cols=95 Identities=17% Similarity=0.150 Sum_probs=78.3
Q ss_pred CCCCCEEEEEcCccCcccc----cCCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeecCCC-CCC--CCCccEEE
Q 016157 120 LPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNL-PYR--SDFGDAAI 184 (394)
Q Consensus 120 l~~g~~VLDvGCG~G~~l~----~~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~l-p~~--~~~fD~Vi 184 (394)
+.++.+|||||||+|..+. ..++..|+|+|+++.+++.|+++ ++.++.+|+.+. +.. ++.||+|+
T Consensus 52 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~ 131 (233)
T 2gpy_A 52 MAAPARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLELYPLFDVLF 131 (233)
T ss_dssp HHCCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHTTSCCEEEEE
T ss_pred ccCCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhcccCCCccEEE
Confidence 4567899999999998643 35678999999999999999876 378899998874 433 57899999
Q ss_pred ehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 016157 185 SIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (394)
Q Consensus 185 ~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~ 220 (394)
+....+ . ...+++++.++|||||++++..+
T Consensus 132 ~~~~~~---~---~~~~l~~~~~~L~pgG~lv~~~~ 161 (233)
T 2gpy_A 132 IDAAKG---Q---YRRFFDMYSPMVRPGGLILSDNV 161 (233)
T ss_dssp EEGGGS---C---HHHHHHHHGGGEEEEEEEEEETT
T ss_pred ECCCHH---H---HHHHHHHHHHHcCCCeEEEEEcC
Confidence 987753 3 67899999999999999999754
|
| >1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A | Back alignment and structure |
|---|
Probab=99.21 E-value=2.5e-11 Score=113.15 Aligned_cols=98 Identities=13% Similarity=0.184 Sum_probs=76.8
Q ss_pred CCCEEEEEcCccCcccc----c--CCCcEEEEEeCCHHHHHHHHHc---C------------------------------
Q 016157 122 SGSLVLDAGCGNGKYLG----L--NPDCFFVGCDISPSLIKICVDR---G------------------------------ 162 (394)
Q Consensus 122 ~g~~VLDvGCG~G~~l~----~--~~~~~v~gvD~S~~~l~~a~~~---~------------------------------ 162 (394)
++.+|||+|||+|.++. . .++..|+|+|+|+.+++.|+++ .
T Consensus 51 ~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (250)
T 1o9g_A 51 GPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQA 130 (250)
T ss_dssp SCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhhhcccccchhhhhh
Confidence 46799999999998743 2 3467999999999999999854 2
Q ss_pred ---Ce-------------EEEeecCCCCC-----CCCCccEEEehhhhhhcCC------hhHHHHHHHHHHhccccCcEE
Q 016157 163 ---HE-------------VLVADAVNLPY-----RSDFGDAAISIAVLHHLST------ESRRKKAIEELVRVVKKGSLV 215 (394)
Q Consensus 163 ---i~-------------~~~~D~~~lp~-----~~~~fD~Vi~~~vl~hl~~------~~~~~~~L~ei~r~LkpGG~l 215 (394)
++ +.++|+.+... ..+.||+|+++..+.+... .+....+++++.++|||||++
T Consensus 131 ~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l 210 (250)
T 1o9g_A 131 ARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPAHAVI 210 (250)
T ss_dssp HHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCTTCEE
T ss_pred hhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHHHHHHHHHhcCCCcEE
Confidence 45 99999987431 3458999999877666543 233678999999999999999
Q ss_pred EEEE
Q 016157 216 LITV 219 (394)
Q Consensus 216 li~~ 219 (394)
++..
T Consensus 211 ~~~~ 214 (250)
T 1o9g_A 211 AVTD 214 (250)
T ss_dssp EEEE
T ss_pred EEeC
Confidence 9843
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=99.20 E-value=4.4e-11 Score=109.50 Aligned_cols=94 Identities=18% Similarity=0.200 Sum_probs=73.8
Q ss_pred CCCCCEEEEEcCccCcccc----c-CCCcEEEEEeCCHHHHHHHHHc-----CCeEEEeecCCCC---CCCCCccEEEeh
Q 016157 120 LPSGSLVLDAGCGNGKYLG----L-NPDCFFVGCDISPSLIKICVDR-----GHEVLVADAVNLP---YRSDFGDAAISI 186 (394)
Q Consensus 120 l~~g~~VLDvGCG~G~~l~----~-~~~~~v~gvD~S~~~l~~a~~~-----~i~~~~~D~~~lp---~~~~~fD~Vi~~ 186 (394)
+.++.+|||+|||+|.++. . .+...|+|+|+|+.+++.++++ +++++.+|+.+.. ...++||+|++.
T Consensus 71 ~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~~~ 150 (227)
T 1g8a_A 71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIFED 150 (227)
T ss_dssp CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEEEEC
T ss_pred CCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhccCCCEEEEccCCCcchhhcccCCceEEEEC
Confidence 4678899999999998743 2 3557999999999988887664 6889999998732 124689999976
Q ss_pred hhhhhcCChhHHHHHHHHHHhccccCcEEEEE
Q 016157 187 AVLHHLSTESRRKKAIEELVRVVKKGSLVLIT 218 (394)
Q Consensus 187 ~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~ 218 (394)
.. .......++.++.++|||||++++.
T Consensus 151 ~~-----~~~~~~~~l~~~~~~LkpgG~l~~~ 177 (227)
T 1g8a_A 151 VA-----QPTQAKILIDNAEVYLKRGGYGMIA 177 (227)
T ss_dssp CC-----STTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CC-----CHhHHHHHHHHHHHhcCCCCEEEEE
Confidence 54 2222445699999999999999998
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=1.3e-11 Score=121.35 Aligned_cols=97 Identities=18% Similarity=0.198 Sum_probs=82.3
Q ss_pred CCCCEEEEEcCccCcccc----cCCCcEEEEEeCCHHHHHHHHHc-CCeEEEeecCCCCCCCCCccEEEehhhhhhcCCh
Q 016157 121 PSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR-GHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTE 195 (394)
Q Consensus 121 ~~g~~VLDvGCG~G~~l~----~~~~~~v~gvD~S~~~l~~a~~~-~i~~~~~D~~~lp~~~~~fD~Vi~~~vl~hl~~~ 195 (394)
.++.+|||||||+|.++. ..++..++++|+ +.+++.|++. +++++.+|+.+ +++ .||+|++..++||+++.
T Consensus 192 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~~~-~~~--~~D~v~~~~vlh~~~d~ 267 (358)
T 1zg3_A 192 EGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQ-PQVVGNLTGNENLNFVGGDMFK-SIP--SADAVLLKWVLHDWNDE 267 (358)
T ss_dssp HTCSEEEEETCTTSHHHHHHHHHCTTSEEEEEEC-HHHHSSCCCCSSEEEEECCTTT-CCC--CCSEEEEESCGGGSCHH
T ss_pred cCCCEEEEECCCcCHHHHHHHHHCCCCeEEEecc-HHHHhhcccCCCcEEEeCccCC-CCC--CceEEEEcccccCCCHH
Confidence 456799999999999753 367889999999 7898887753 68999999988 665 49999999999999874
Q ss_pred hHHHHHHHHHHhcccc---CcEEEEEEcCc
Q 016157 196 SRRKKAIEELVRVVKK---GSLVLITVWAV 222 (394)
Q Consensus 196 ~~~~~~L~ei~r~Lkp---GG~lli~~~~~ 222 (394)
+ ...+|+++.++||| ||+++|..+..
T Consensus 268 ~-~~~~l~~~~~~L~p~~~gG~l~i~e~~~ 296 (358)
T 1zg3_A 268 Q-SLKILKNSKEAISHKGKDGKVIIIDISI 296 (358)
T ss_dssp H-HHHHHHHHHHHTGGGGGGCEEEEEECEE
T ss_pred H-HHHHHHHHHHhCCCCCCCcEEEEEEecc
Confidence 4 45999999999999 99999987654
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.20 E-value=2e-11 Score=112.07 Aligned_cols=98 Identities=20% Similarity=0.268 Sum_probs=78.5
Q ss_pred HHHHc-CCCCCCEEEEEcCccCccccc----CC------CcEEEEEeCCHHHHHHHHHc------------CCeEEEeec
Q 016157 114 ATFLN-SLPSGSLVLDAGCGNGKYLGL----NP------DCFFVGCDISPSLIKICVDR------------GHEVLVADA 170 (394)
Q Consensus 114 ~~~l~-~l~~g~~VLDvGCG~G~~l~~----~~------~~~v~gvD~S~~~l~~a~~~------------~i~~~~~D~ 170 (394)
...+. .+.++.+|||||||+|.++.. .. ...|+|+|+++.+++.|+++ ++.++.+|+
T Consensus 75 ~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~ 154 (227)
T 1r18_A 75 LEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDG 154 (227)
T ss_dssp HHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCG
T ss_pred HHHHHhhCCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCc
Confidence 34443 467889999999999997532 11 25999999999999998764 478999999
Q ss_pred CCCCCCC-CCccEEEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 016157 171 VNLPYRS-DFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 221 (394)
Q Consensus 171 ~~lp~~~-~~fD~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~ 221 (394)
.. ++++ +.||+|++..+++|+. +++.++|||||++++.+..
T Consensus 155 ~~-~~~~~~~fD~I~~~~~~~~~~---------~~~~~~LkpgG~lvi~~~~ 196 (227)
T 1r18_A 155 RK-GYPPNAPYNAIHVGAAAPDTP---------TELINQLASGGRLIVPVGP 196 (227)
T ss_dssp GG-CCGGGCSEEEEEECSCBSSCC---------HHHHHTEEEEEEEEEEESC
T ss_pred cc-CCCcCCCccEEEECCchHHHH---------HHHHHHhcCCCEEEEEEec
Confidence 87 4444 7899999999988874 5688999999999999864
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=1.7e-11 Score=115.14 Aligned_cols=96 Identities=19% Similarity=0.138 Sum_probs=77.6
Q ss_pred CCCCCEEEEEcCccCccccc--CCCcEEEEEeCCHHHHHHHHHc----C--CeEEEeecCCCCCCCCCccEEEehhhhhh
Q 016157 120 LPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR----G--HEVLVADAVNLPYRSDFGDAAISIAVLHH 191 (394)
Q Consensus 120 l~~g~~VLDvGCG~G~~l~~--~~~~~v~gvD~S~~~l~~a~~~----~--i~~~~~D~~~lp~~~~~fD~Vi~~~vl~h 191 (394)
+.++.+|||+|||+|.++.. ..+..|+|+|+++.+++.|+++ + +++..+|+.+. +++++||+|+++...++
T Consensus 118 ~~~~~~VLDiGcG~G~l~~~la~~g~~v~gvDi~~~~v~~a~~n~~~~~~~v~~~~~d~~~~-~~~~~fD~Vv~n~~~~~ 196 (254)
T 2nxc_A 118 LRPGDKVLDLGTGSGVLAIAAEKLGGKALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAA-LPFGPFDLLVANLYAEL 196 (254)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHHH-GGGCCEEEEEEECCHHH
T ss_pred cCCCCEEEEecCCCcHHHHHHHHhCCeEEEEECCHHHHHHHHHHHHHcCCcEEEEECChhhc-CcCCCCCEEEECCcHHH
Confidence 56788999999999997431 2234999999999999999886 3 78888888763 44678999999866554
Q ss_pred cCChhHHHHHHHHHHhccccCcEEEEEEcCc
Q 016157 192 LSTESRRKKAIEELVRVVKKGSLVLITVWAV 222 (394)
Q Consensus 192 l~~~~~~~~~L~ei~r~LkpGG~lli~~~~~ 222 (394)
...++.++.++|||||+++++.+..
T Consensus 197 ------~~~~l~~~~~~LkpgG~lils~~~~ 221 (254)
T 2nxc_A 197 ------HAALAPRYREALVPGGRALLTGILK 221 (254)
T ss_dssp ------HHHHHHHHHHHEEEEEEEEEEEEEG
T ss_pred ------HHHHHHHHHHHcCCCCEEEEEeecc
Confidence 4678999999999999999986543
|
| >2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=1e-11 Score=115.47 Aligned_cols=93 Identities=18% Similarity=0.185 Sum_probs=75.3
Q ss_pred CCCEEEEEcCccCcccc----c----CCCcEEEEEeCCHHHHHHHHHc--CCeEEEeecCCC---CCCC-CCccEEEehh
Q 016157 122 SGSLVLDAGCGNGKYLG----L----NPDCFFVGCDISPSLIKICVDR--GHEVLVADAVNL---PYRS-DFGDAAISIA 187 (394)
Q Consensus 122 ~g~~VLDvGCG~G~~l~----~----~~~~~v~gvD~S~~~l~~a~~~--~i~~~~~D~~~l---p~~~-~~fD~Vi~~~ 187 (394)
++.+|||||||+|..+. . .++.+|+|+|+|+.|++.|+.. +++++++|+.++ +... .+||+|++..
T Consensus 81 ~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~~~~~v~~~~gD~~~~~~l~~~~~~~fD~I~~d~ 160 (236)
T 2bm8_A 81 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASDMENITLHQGDCSDLTTFEHLREMAHPLIFIDN 160 (236)
T ss_dssp CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGGGCTTEEEEECCSSCSGGGGGGSSSCSSEEEEES
T ss_pred CCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhccCCceEEEECcchhHHHHHhhccCCCCEEEECC
Confidence 35799999999999643 2 4678999999999999888753 689999999884 5434 4799999876
Q ss_pred hhhhcCChhHHHHHHHHHHh-ccccCcEEEEEEc
Q 016157 188 VLHHLSTESRRKKAIEELVR-VVKKGSLVLITVW 220 (394)
Q Consensus 188 vl~hl~~~~~~~~~L~ei~r-~LkpGG~lli~~~ 220 (394)
. |. + ...+|.++.+ +|||||++++..+
T Consensus 161 ~--~~-~---~~~~l~~~~r~~LkpGG~lv~~d~ 188 (236)
T 2bm8_A 161 A--HA-N---TFNIMKWAVDHLLEEGDYFIIEDM 188 (236)
T ss_dssp S--CS-S---HHHHHHHHHHHTCCTTCEEEECSC
T ss_pred c--hH-h---HHHHHHHHHHhhCCCCCEEEEEeC
Confidence 5 42 3 6789999997 9999999999764
|
| >2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} | Back alignment and structure |
|---|
Probab=99.18 E-value=5.5e-12 Score=119.51 Aligned_cols=99 Identities=18% Similarity=0.121 Sum_probs=74.3
Q ss_pred cCCCCCCEEEEEcCccCccccc--CCCcEEEEEeCCHHHHHHHHHc---------CCeEE--EeecCCCCCCCCCccEEE
Q 016157 118 NSLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR---------GHEVL--VADAVNLPYRSDFGDAAI 184 (394)
Q Consensus 118 ~~l~~g~~VLDvGCG~G~~l~~--~~~~~v~gvD~S~~~l~~a~~~---------~i~~~--~~D~~~lp~~~~~fD~Vi 184 (394)
..+.++.+|||||||+|.++.. .. ..|+|+|+++ |+..+++. ++.++ ++|+.+++ +++||+|+
T Consensus 70 ~~~~~g~~VLDlGcGtG~~s~~la~~-~~V~gvD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~--~~~fD~V~ 145 (265)
T 2oxt_A 70 GYVELTGRVVDLGCGRGGWSYYAASR-PHVMDVRAYT-LGVGGHEVPRITESYGWNIVKFKSRVDIHTLP--VERTDVIM 145 (265)
T ss_dssp TSCCCCEEEEEESCTTSHHHHHHHTS-TTEEEEEEEC-CCCSSCCCCCCCCBTTGGGEEEECSCCTTTSC--CCCCSEEE
T ss_pred CCCCCCCEEEEeCcCCCHHHHHHHHc-CcEEEEECch-hhhhhhhhhhhhhccCCCeEEEecccCHhHCC--CCCCcEEE
Confidence 3467889999999999997542 22 6899999998 54333221 46888 89999876 67899999
Q ss_pred ehhhhhhcCChh----HHHHHHHHHHhccccCc--EEEEEEcC
Q 016157 185 SIAVLHHLSTES----RRKKAIEELVRVVKKGS--LVLITVWA 221 (394)
Q Consensus 185 ~~~vl~hl~~~~----~~~~~L~ei~r~LkpGG--~lli~~~~ 221 (394)
|..+ ++..... +...+|.++.++||||| .|++.++.
T Consensus 146 sd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv~~ 187 (265)
T 2oxt_A 146 CDVG-ESSPKWSVESERTIKILELLEKWKVKNPSADFVVKVLC 187 (265)
T ss_dssp ECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEESC
T ss_pred EeCc-ccCCccchhHHHHHHHHHHHHHHhccCCCeEEEEEeCC
Confidence 9876 4443321 11248999999999999 99998887
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=2.4e-11 Score=115.65 Aligned_cols=96 Identities=16% Similarity=0.139 Sum_probs=78.0
Q ss_pred CCCCCCEEEEEcCccCccccc--CCCc-EEEEEeCCHHHHHHHHHc--------CCeEEEeecCCCCCCCCCccEEEehh
Q 016157 119 SLPSGSLVLDAGCGNGKYLGL--NPDC-FFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISIA 187 (394)
Q Consensus 119 ~l~~g~~VLDvGCG~G~~l~~--~~~~-~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~lp~~~~~fD~Vi~~~ 187 (394)
.+++|.+|||+|||+|.++.. ..+. .|+|+|+|+.+++.|+++ .++++++|+.+++. +++||+|++..
T Consensus 122 ~~~~~~~VLDlgcG~G~~~~~la~~~~~~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~-~~~fD~Vi~~~ 200 (278)
T 2frn_A 122 VAKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG-ENIADRILMGY 200 (278)
T ss_dssp HCCTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC-CSCEEEEEECC
T ss_pred hCCCCCEEEEecccCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcc-cCCccEEEECC
Confidence 356789999999999997532 1122 799999999999999876 26799999999876 78999999853
Q ss_pred hhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCc
Q 016157 188 VLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAV 222 (394)
Q Consensus 188 vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~ 222 (394)
. .. ...++.++.++|||||.+++..+..
T Consensus 201 p----~~---~~~~l~~~~~~LkpgG~l~~~~~~~ 228 (278)
T 2frn_A 201 V----VR---THEFIPKALSIAKDGAIIHYHNTVP 228 (278)
T ss_dssp C----SS---GGGGHHHHHHHEEEEEEEEEEEEEE
T ss_pred c----hh---HHHHHHHHHHHCCCCeEEEEEEeec
Confidence 2 22 4678999999999999999998764
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
Probab=99.18 E-value=2.5e-11 Score=109.89 Aligned_cols=92 Identities=17% Similarity=0.107 Sum_probs=73.7
Q ss_pred CCCCEEEEEcCccCcccc----cCC-CcEEEEEeCCHHHHHHHHHc--------CCeEEEeecCCC-CCCCCCccEEEeh
Q 016157 121 PSGSLVLDAGCGNGKYLG----LNP-DCFFVGCDISPSLIKICVDR--------GHEVLVADAVNL-PYRSDFGDAAISI 186 (394)
Q Consensus 121 ~~g~~VLDvGCG~G~~l~----~~~-~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~l-p~~~~~fD~Vi~~ 186 (394)
.++.+|||||||+|..+. ..+ +..|+|+|+++.+++.|+++ .++++.+|+.+. +..++ ||+|++.
T Consensus 55 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~-fD~v~~~ 133 (210)
T 3c3p_A 55 KQPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAGQRD-IDILFMD 133 (210)
T ss_dssp HCCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTTCCS-EEEEEEE
T ss_pred hCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhccCCC-CCEEEEc
Confidence 456799999999998642 334 78999999999999999875 378999998763 54456 9999987
Q ss_pred hhhhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 016157 187 AVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 187 ~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~ 219 (394)
.. ... ...+++++.++|||||++++..
T Consensus 134 ~~---~~~---~~~~l~~~~~~LkpgG~lv~~~ 160 (210)
T 3c3p_A 134 CD---VFN---GADVLERMNRCLAKNALLIAVN 160 (210)
T ss_dssp TT---TSC---HHHHHHHHGGGEEEEEEEEEES
T ss_pred CC---hhh---hHHHHHHHHHhcCCCeEEEEEC
Confidence 43 223 6789999999999999999864
|
| >2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=4.1e-12 Score=121.10 Aligned_cols=99 Identities=13% Similarity=0.111 Sum_probs=74.4
Q ss_pred CCCCCCEEEEEcCccCccccc--CCCcEEEEEeCCHHHHHHHHHc---------CCeEE--EeecCCCCCCCCCccEEEe
Q 016157 119 SLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR---------GHEVL--VADAVNLPYRSDFGDAAIS 185 (394)
Q Consensus 119 ~l~~g~~VLDvGCG~G~~l~~--~~~~~v~gvD~S~~~l~~a~~~---------~i~~~--~~D~~~lp~~~~~fD~Vi~ 185 (394)
.+.++.+|||+|||+|.++.. .. ..|+|+|+|+ |+..++++ ++.++ ++|+.++| +++||+|+|
T Consensus 79 ~~~~g~~VLDlGcGtG~~s~~la~~-~~V~gVD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~--~~~fD~Vvs 154 (276)
T 2wa2_A 79 GVELKGTVVDLGCGRGSWSYYAASQ-PNVREVKAYT-LGTSGHEKPRLVETFGWNLITFKSKVDVTKME--PFQADTVLC 154 (276)
T ss_dssp SCCCCEEEEEESCTTCHHHHHHHTS-TTEEEEEEEC-CCCTTSCCCCCCCCTTGGGEEEECSCCGGGCC--CCCCSEEEE
T ss_pred CCCCCCEEEEeccCCCHHHHHHHHc-CCEEEEECch-hhhhhhhchhhhhhcCCCeEEEeccCcHhhCC--CCCcCEEEE
Confidence 456889999999999997542 22 6899999998 64433322 46888 89999876 678999999
Q ss_pred hhhhhhcCChh----HHHHHHHHHHhccccCc--EEEEEEcCc
Q 016157 186 IAVLHHLSTES----RRKKAIEELVRVVKKGS--LVLITVWAV 222 (394)
Q Consensus 186 ~~vl~hl~~~~----~~~~~L~ei~r~LkpGG--~lli~~~~~ 222 (394)
..+ ++..... +...+|+++.++||||| .|++.++..
T Consensus 155 d~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~~~~ 196 (276)
T 2wa2_A 155 DIG-ESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVKVLNP 196 (276)
T ss_dssp CCC-CCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEESCC
T ss_pred CCC-cCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEEeCCC
Confidence 877 4433321 11247999999999999 999988873
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.17 E-value=1.8e-11 Score=109.02 Aligned_cols=104 Identities=19% Similarity=0.190 Sum_probs=74.6
Q ss_pred HHcCCCCCCEEEEEcCccCcccc----cCCC---------cEEEEEeCCHHHHHHHHHcCCeEE-EeecCCCC-------
Q 016157 116 FLNSLPSGSLVLDAGCGNGKYLG----LNPD---------CFFVGCDISPSLIKICVDRGHEVL-VADAVNLP------- 174 (394)
Q Consensus 116 ~l~~l~~g~~VLDvGCG~G~~l~----~~~~---------~~v~gvD~S~~~l~~a~~~~i~~~-~~D~~~lp------- 174 (394)
....+.++.+|||+|||+|.++. ..+. ..|+|+|+|+.+. ..+++++ .+|+...+
T Consensus 16 ~~~~~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~~----~~~~~~~~~~d~~~~~~~~~~~~ 91 (196)
T 2nyu_A 16 RHQILRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIFP----LEGATFLCPADVTDPRTSQRILE 91 (196)
T ss_dssp HHCCCCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCCC----CTTCEEECSCCTTSHHHHHHHHH
T ss_pred hcCCCCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhccc----CCCCeEEEeccCCCHHHHHHHHH
Confidence 33456789999999999999743 2232 7999999998431 1267888 88987653
Q ss_pred -CCCCCccEEEehhhhhh----cCChh----HHHHHHHHHHhccccCcEEEEEEcCcc
Q 016157 175 -YRSDFGDAAISIAVLHH----LSTES----RRKKAIEELVRVVKKGSLVLITVWAVE 223 (394)
Q Consensus 175 -~~~~~fD~Vi~~~vl~h----l~~~~----~~~~~L~ei~r~LkpGG~lli~~~~~~ 223 (394)
+++++||+|++...++. ..+.. ....+++++.++|||||+|++.++..+
T Consensus 92 ~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~ 149 (196)
T 2nyu_A 92 VLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTWAGS 149 (196)
T ss_dssp HSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCSG
T ss_pred hcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEecCCc
Confidence 33568999998654432 22211 014889999999999999999988653
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=2.9e-11 Score=111.59 Aligned_cols=93 Identities=20% Similarity=0.264 Sum_probs=75.4
Q ss_pred CCCCCCEEEEEcCccCccccc----CCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeecCCCCCCC-CCccEEEeh
Q 016157 119 SLPSGSLVLDAGCGNGKYLGL----NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRS-DFGDAAISI 186 (394)
Q Consensus 119 ~l~~g~~VLDvGCG~G~~l~~----~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~lp~~~-~~fD~Vi~~ 186 (394)
.+.++.+|||||||+|.++.. .+ ..|+|+|+++.+++.|+++ +++++.+|+ ..++++ ..||+|++.
T Consensus 88 ~~~~~~~vLdiG~G~G~~~~~la~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~-~~~~~~~~~fD~Ii~~ 165 (235)
T 1jg1_A 88 NLKPGMNILEVGTGSGWNAALISEIVK-TDVYTIERIPELVEFAKRNLERAGVKNVHVILGDG-SKGFPPKAPYDVIIVT 165 (235)
T ss_dssp TCCTTCCEEEECCTTSHHHHHHHHHHC-SCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCG-GGCCGGGCCEEEEEEC
T ss_pred CCCCCCEEEEEeCCcCHHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEECCc-ccCCCCCCCccEEEEC
Confidence 466788999999999997532 33 7899999999999999875 478899997 444444 359999999
Q ss_pred hhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCc
Q 016157 187 AVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAV 222 (394)
Q Consensus 187 ~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~ 222 (394)
.+++++.. ++.++|||||++++.+...
T Consensus 166 ~~~~~~~~---------~~~~~L~pgG~lvi~~~~~ 192 (235)
T 1jg1_A 166 AGAPKIPE---------PLIEQLKIGGKLIIPVGSY 192 (235)
T ss_dssp SBBSSCCH---------HHHHTEEEEEEEEEEECSS
T ss_pred CcHHHHHH---------HHHHhcCCCcEEEEEEecC
Confidence 99988752 5789999999999998653
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.16 E-value=4.1e-11 Score=116.72 Aligned_cols=98 Identities=15% Similarity=0.166 Sum_probs=76.1
Q ss_pred CCCCCCEEEEEcCccCcccc----c-CCCcEEEEEeCCHHHHHHHHHc------------------CCeEEEeecCCC--
Q 016157 119 SLPSGSLVLDAGCGNGKYLG----L-NPDCFFVGCDISPSLIKICVDR------------------GHEVLVADAVNL-- 173 (394)
Q Consensus 119 ~l~~g~~VLDvGCG~G~~l~----~-~~~~~v~gvD~S~~~l~~a~~~------------------~i~~~~~D~~~l-- 173 (394)
.+.++.+|||+|||+|.++. . .+...|+|+|+++.+++.|+++ +++++.+|+.++
T Consensus 102 ~~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~d~~~~~~ 181 (336)
T 2b25_A 102 DINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATE 181 (336)
T ss_dssp TCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC-
T ss_pred CCCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEECChHHccc
Confidence 46788999999999999743 2 4558999999999999999874 478999999886
Q ss_pred CCCCCCccEEEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCccc
Q 016157 174 PYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQ 224 (394)
Q Consensus 174 p~~~~~fD~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~~~ 224 (394)
++++++||+|++.. +. +..++.++.++|||||++++..+..++
T Consensus 182 ~~~~~~fD~V~~~~-----~~---~~~~l~~~~~~LkpgG~lv~~~~~~~~ 224 (336)
T 2b25_A 182 DIKSLTFDAVALDM-----LN---PHVTLPVFYPHLKHGGVCAVYVVNITQ 224 (336)
T ss_dssp ------EEEEEECS-----SS---TTTTHHHHGGGEEEEEEEEEEESSHHH
T ss_pred ccCCCCeeEEEECC-----CC---HHHHHHHHHHhcCCCcEEEEEeCCHHH
Confidence 45667899999843 33 345899999999999999999876544
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.16 E-value=3e-11 Score=123.67 Aligned_cols=96 Identities=17% Similarity=0.108 Sum_probs=79.5
Q ss_pred CCCCEEEEEcCccCcccc---cCCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeecCCCCCCCCCccEEEehhhh
Q 016157 121 PSGSLVLDAGCGNGKYLG---LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISIAVL 189 (394)
Q Consensus 121 ~~g~~VLDvGCG~G~~l~---~~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~lp~~~~~fD~Vi~~~vl 189 (394)
.++.+|||||||+|.++. ..+..+|+|+|+|+ +++.|+++ +++++.+|+.+++++ ++||+|++..++
T Consensus 157 ~~~~~VLDiGcGtG~la~~la~~~~~~V~gvD~s~-~l~~A~~~~~~~gl~~~v~~~~~d~~~~~~~-~~fD~Ivs~~~~ 234 (480)
T 3b3j_A 157 FKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVSLP-EQVDIIISEPMG 234 (480)
T ss_dssp TTTCEEEEESCSTTHHHHHHHHTTCSEEEEEECHH-HHHHHHHHHHHTTCTTTEEEEESCTTTCCCS-SCEEEEECCCCH
T ss_pred cCCCEEEEecCcccHHHHHHHHcCCCEEEEEEcHH-HHHHHHHHHHHcCCCCcEEEEECchhhCccC-CCeEEEEEeCch
Confidence 467899999999998643 24556999999998 88888764 478999999998764 589999999888
Q ss_pred hhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 016157 190 HHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 190 ~hl~~~~~~~~~L~ei~r~LkpGG~lli~~ 219 (394)
+|+..+. ....+.++.++|||||++++..
T Consensus 235 ~~~~~e~-~~~~l~~~~~~LkpgG~li~~~ 263 (480)
T 3b3j_A 235 YMLFNER-MLESYLHAKKYLKPSGNMFPTI 263 (480)
T ss_dssp HHHTCHH-HHHHHHHGGGGEEEEEEEESCE
T ss_pred HhcCcHH-HHHHHHHHHHhcCCCCEEEEEe
Confidence 9987654 5677889999999999998644
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=99.16 E-value=7e-11 Score=109.41 Aligned_cols=105 Identities=11% Similarity=0.116 Sum_probs=85.3
Q ss_pred HHHHHHHcCCCCCCEEEEEcCccCcccc----cCCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeecCCCCCCCC
Q 016157 111 PKVATFLNSLPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSD 178 (394)
Q Consensus 111 ~~l~~~l~~l~~g~~VLDvGCG~G~~l~----~~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~lp~~~~ 178 (394)
+++......+++|.+|||||||+|.+.- ..+...|+|+|+++.+++.|+++ .+++..+|..+...+.+
T Consensus 10 ~RL~~i~~~v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~~~~~ 89 (230)
T 3lec_A 10 KRLQKVANYVPKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAFEEAD 89 (230)
T ss_dssp HHHHHHHTTSCTTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGG
T ss_pred HHHHHHHHhCCCCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhcccccc
Confidence 5666777778899999999999999742 34556899999999999999987 37999999998765555
Q ss_pred CccEEEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 016157 179 FGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (394)
Q Consensus 179 ~fD~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~ 220 (394)
.||+|++.+..-.+ ...+|.+..+.|+++|+|++.-.
T Consensus 90 ~~D~IviaGmGg~l-----I~~IL~~~~~~l~~~~~lIlqp~ 126 (230)
T 3lec_A 90 NIDTITICGMGGRL-----IADILNNDIDKLQHVKTLVLQPN 126 (230)
T ss_dssp CCCEEEEEEECHHH-----HHHHHHHTGGGGTTCCEEEEEES
T ss_pred ccCEEEEeCCchHH-----HHHHHHHHHHHhCcCCEEEEECC
Confidence 79998876654433 67888999999999999999863
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=3.7e-11 Score=109.56 Aligned_cols=100 Identities=14% Similarity=0.025 Sum_probs=76.9
Q ss_pred HHcCCCCCCEEEEEcCccCcccc----cCC-CcEEEEEeCCHHHHHHHHHc--------CCeEEEeecCCC-C-CC---C
Q 016157 116 FLNSLPSGSLVLDAGCGNGKYLG----LNP-DCFFVGCDISPSLIKICVDR--------GHEVLVADAVNL-P-YR---S 177 (394)
Q Consensus 116 ~l~~l~~g~~VLDvGCG~G~~l~----~~~-~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~l-p-~~---~ 177 (394)
.+....++.+|||||||+|..+. ..+ +..++|+|+++.+++.|+++ .++++.+|+.+. + +. .
T Consensus 52 ~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~ 131 (223)
T 3duw_A 52 LLVQIQGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKY 131 (223)
T ss_dssp HHHHHHTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTC
T ss_pred HHHHhhCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCC
Confidence 33334567899999999998643 334 78999999999999999875 378999998653 1 11 2
Q ss_pred CCccEEEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 016157 178 DFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 221 (394)
Q Consensus 178 ~~fD~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~ 221 (394)
++||+|++.....+ ...+++++.++|||||.+++....
T Consensus 132 ~~fD~v~~d~~~~~------~~~~l~~~~~~L~pgG~lv~~~~~ 169 (223)
T 3duw_A 132 EPFDFIFIDADKQN------NPAYFEWALKLSRPGTVIIGDNVV 169 (223)
T ss_dssp CCCSEEEECSCGGG------HHHHHHHHHHTCCTTCEEEEESCS
T ss_pred CCcCEEEEcCCcHH------HHHHHHHHHHhcCCCcEEEEeCCC
Confidence 67999998765321 568999999999999998887544
|
| >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.14 E-value=3.5e-11 Score=115.28 Aligned_cols=93 Identities=13% Similarity=0.184 Sum_probs=69.7
Q ss_pred CCCCEEEEEcCccCccccc---CCCcEEEEEeCCHHHHHHHHHcCCeEE---EeecCCCC---CCCCCccEEEehhhhhh
Q 016157 121 PSGSLVLDAGCGNGKYLGL---NPDCFFVGCDISPSLIKICVDRGHEVL---VADAVNLP---YRSDFGDAAISIAVLHH 191 (394)
Q Consensus 121 ~~g~~VLDvGCG~G~~l~~---~~~~~v~gvD~S~~~l~~a~~~~i~~~---~~D~~~lp---~~~~~fD~Vi~~~vl~h 191 (394)
.+|.+|||||||||.++.. .....|+|+|+|+.|++.+.++.-.+. ..|+..++ ++..+||+|++..++++
T Consensus 84 ~~g~~vLDiGcGTG~~t~~L~~~ga~~V~aVDvs~~mL~~a~r~~~rv~~~~~~ni~~l~~~~l~~~~fD~v~~d~sf~s 163 (291)
T 3hp7_A 84 VEDMITIDIGASTGGFTDVMLQNGAKLVYAVDVGTNQLVWKLRQDDRVRSMEQYNFRYAEPVDFTEGLPSFASIDVSFIS 163 (291)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSSSCSCHHHHTCTTEEEECSCCGGGCCGGGCTTCCCSEEEECCSSSC
T ss_pred ccccEEEecCCCccHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCcccceecccCceecchhhCCCCCCCEEEEEeeHhh
Confidence 3578999999999998642 333599999999999998665432222 23444443 23446999999888765
Q ss_pred cCChhHHHHHHHHHHhccccCcEEEEEE
Q 016157 192 LSTESRRKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 192 l~~~~~~~~~L~ei~r~LkpGG~lli~~ 219 (394)
+ ..+|.++.|+|||||++++.+
T Consensus 164 l------~~vL~e~~rvLkpGG~lv~lv 185 (291)
T 3hp7_A 164 L------NLILPALAKILVDGGQVVALV 185 (291)
T ss_dssp G------GGTHHHHHHHSCTTCEEEEEE
T ss_pred H------HHHHHHHHHHcCcCCEEEEEE
Confidence 4 578999999999999999974
|
| >1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 | Back alignment and structure |
|---|
Probab=99.14 E-value=9.6e-11 Score=118.13 Aligned_cols=97 Identities=18% Similarity=0.214 Sum_probs=73.3
Q ss_pred CCCCCCEEEEEcCccCccccc----CCCcEEEEEeCCHHHHHHH-------HHc---------CCeEEEeecCCC--CC-
Q 016157 119 SLPSGSLVLDAGCGNGKYLGL----NPDCFFVGCDISPSLIKIC-------VDR---------GHEVLVADAVNL--PY- 175 (394)
Q Consensus 119 ~l~~g~~VLDvGCG~G~~l~~----~~~~~v~gvD~S~~~l~~a-------~~~---------~i~~~~~D~~~l--p~- 175 (394)
.+.++.+|||||||+|.++.. .+...|+|+|+++.+++.| +++ +++++++|.... ++
T Consensus 239 ~l~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~gD~~~~~~~~~ 318 (433)
T 1u2z_A 239 QLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVDNNRVA 318 (433)
T ss_dssp TCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCSTTCHHHH
T ss_pred CCCCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEEcCccccccccc
Confidence 456889999999999997532 3445899999999998888 543 356777765432 22
Q ss_pred -CCCCccEEEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 016157 176 -RSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 176 -~~~~fD~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~ 219 (394)
..+.||+|+++.++ +.++ +..+|+++.++|||||++++..
T Consensus 319 ~~~~~FDvIvvn~~l-~~~d---~~~~L~el~r~LKpGG~lVi~d 359 (433)
T 1u2z_A 319 ELIPQCDVILVNNFL-FDED---LNKKVEKILQTAKVGCKIISLK 359 (433)
T ss_dssp HHGGGCSEEEECCTT-CCHH---HHHHHHHHHTTCCTTCEEEESS
T ss_pred cccCCCCEEEEeCcc-cccc---HHHHHHHHHHhCCCCeEEEEee
Confidence 24789999987666 2222 6788999999999999999874
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.14 E-value=9.4e-11 Score=109.44 Aligned_cols=105 Identities=9% Similarity=0.086 Sum_probs=84.4
Q ss_pred HHHHHHHcCCCCCCEEEEEcCccCcccc----cCCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeecCCCCCCCC
Q 016157 111 PKVATFLNSLPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSD 178 (394)
Q Consensus 111 ~~l~~~l~~l~~g~~VLDvGCG~G~~l~----~~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~lp~~~~ 178 (394)
+++..+...+++|.+|||||||+|.+.- ..+...|+|+|+++.+++.|+++ .+++..+|..+...+++
T Consensus 10 ~RL~~i~~~v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~~~~~ 89 (244)
T 3gnl_A 10 KRLEKVASYITKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIEKKD 89 (244)
T ss_dssp HHHHHHHTTCCSSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGG
T ss_pred HHHHHHHHhCCCCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhccCccc
Confidence 5666777788899999999999999742 34556899999999999999987 27899999988665444
Q ss_pred CccEEEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 016157 179 FGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (394)
Q Consensus 179 ~fD~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~ 220 (394)
.||+|++....-.+ ...+|.+..+.|+++|+|++.-.
T Consensus 90 ~~D~IviagmGg~l-----I~~IL~~~~~~L~~~~~lIlq~~ 126 (244)
T 3gnl_A 90 AIDTIVIAGMGGTL-----IRTILEEGAAKLAGVTKLILQPN 126 (244)
T ss_dssp CCCEEEEEEECHHH-----HHHHHHHTGGGGTTCCEEEEEES
T ss_pred cccEEEEeCCchHH-----HHHHHHHHHHHhCCCCEEEEEcC
Confidence 69999876543332 67788999999999999999863
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.13 E-value=9.4e-11 Score=108.28 Aligned_cols=96 Identities=15% Similarity=0.128 Sum_probs=78.2
Q ss_pred CCCCCCEEEEEcCccCccccc--CCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeecCCCCCCCCCccEEEehhh
Q 016157 119 SLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISIAV 188 (394)
Q Consensus 119 ~l~~g~~VLDvGCG~G~~l~~--~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~lp~~~~~fD~Vi~~~v 188 (394)
.+.++.+|||+|||+|.++.. ..+..++++|+++.+++.|+++ +++++.+|+.+..+.++.||+|++
T Consensus 88 ~~~~~~~vldiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~--- 164 (248)
T 2yvl_A 88 NLNKEKRVLEFGTGSGALLAVLSEVAGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEVPEGIFHAAFV--- 164 (248)
T ss_dssp TCCTTCEEEEECCTTSHHHHHHHHHSSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSCCCTTCBSEEEE---
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHhCCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhcccCCCcccEEEE---
Confidence 456889999999999986431 1167999999999999999875 467888999885435678999998
Q ss_pred hhhcCChhHHHHHHHHHHhccccCcEEEEEEcCc
Q 016157 189 LHHLSTESRRKKAIEELVRVVKKGSLVLITVWAV 222 (394)
Q Consensus 189 l~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~ 222 (394)
+.++ +..+++++.++|||||++++.....
T Consensus 165 --~~~~---~~~~l~~~~~~L~~gG~l~~~~~~~ 193 (248)
T 2yvl_A 165 --DVRE---PWHYLEKVHKSLMEGAPVGFLLPTA 193 (248)
T ss_dssp --CSSC---GGGGHHHHHHHBCTTCEEEEEESSH
T ss_pred --CCcC---HHHHHHHHHHHcCCCCEEEEEeCCH
Confidence 3444 5688999999999999999998754
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.13 E-value=7.8e-11 Score=111.72 Aligned_cols=99 Identities=14% Similarity=0.135 Sum_probs=81.7
Q ss_pred HcCCCCCCEEEEEcCccCcccc----cCCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeecCCCCCCCCCccEEEe
Q 016157 117 LNSLPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFGDAAIS 185 (394)
Q Consensus 117 l~~l~~g~~VLDvGCG~G~~l~----~~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~lp~~~~~fD~Vi~ 185 (394)
+..+.++.+|||+|||+|.++. ..+...|+|+|+++.+++.|+++ ++.++.+|+.+++. .+.||+|++
T Consensus 114 ~~~~~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~l~~~~~~~~d~~~~~~-~~~~D~Vi~ 192 (272)
T 3a27_A 114 AFISNENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKLNNVIPILADNRDVEL-KDVADRVIM 192 (272)
T ss_dssp HTSCCTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTTCSSEEEEESCGGGCCC-TTCEEEEEE
T ss_pred HHhcCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEECChHHcCc-cCCceEEEE
Confidence 4557788999999999999743 23466999999999999999875 46899999998844 678999998
Q ss_pred hhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCcc
Q 016157 186 IAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVE 223 (394)
Q Consensus 186 ~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~~ 223 (394)
.... . ...++.++.+.|||||+++++.+...
T Consensus 193 d~p~----~---~~~~l~~~~~~LkpgG~l~~s~~~~~ 223 (272)
T 3a27_A 193 GYVH----K---THKFLDKTFEFLKDRGVIHYHETVAE 223 (272)
T ss_dssp CCCS----S---GGGGHHHHHHHEEEEEEEEEEEEEEG
T ss_pred CCcc----c---HHHHHHHHHHHcCCCCEEEEEEcCcc
Confidence 7543 2 56789999999999999999987653
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.13 E-value=2.7e-11 Score=111.44 Aligned_cols=92 Identities=8% Similarity=0.027 Sum_probs=73.1
Q ss_pred CCEEEEEcCccCcccc-----cCCCcEEEEEeCCHHHHHHHHHc---------CCeEEEeecCCC-C-CCCCCccEEEeh
Q 016157 123 GSLVLDAGCGNGKYLG-----LNPDCFFVGCDISPSLIKICVDR---------GHEVLVADAVNL-P-YRSDFGDAAISI 186 (394)
Q Consensus 123 g~~VLDvGCG~G~~l~-----~~~~~~v~gvD~S~~~l~~a~~~---------~i~~~~~D~~~l-p-~~~~~fD~Vi~~ 186 (394)
+.+|||||||+|..+. ..++..|+++|+++.+++.|+++ +++++.+|+.+. + +.+++||+|++.
T Consensus 57 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~~~~~fD~V~~d 136 (221)
T 3dr5_A 57 STGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRLANDSYQLVFGQ 136 (221)
T ss_dssp CCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGSCTTCEEEEEEC
T ss_pred CCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHHhcCCCcCeEEEc
Confidence 4499999999998632 23578999999999999999875 377889998764 2 336899999987
Q ss_pred hhhhhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 016157 187 AVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (394)
Q Consensus 187 ~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~ 220 (394)
.... . ...+++++.++|||||++++...
T Consensus 137 ~~~~---~---~~~~l~~~~~~LkpGG~lv~dn~ 164 (221)
T 3dr5_A 137 VSPM---D---LKALVDAAWPLLRRGGALVLADA 164 (221)
T ss_dssp CCTT---T---HHHHHHHHHHHEEEEEEEEETTT
T ss_pred CcHH---H---HHHHHHHHHHHcCCCcEEEEeCC
Confidence 5422 2 56799999999999999998653
|
| >3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A | Back alignment and structure |
|---|
Probab=99.13 E-value=6.9e-11 Score=112.13 Aligned_cols=109 Identities=17% Similarity=0.149 Sum_probs=81.0
Q ss_pred HcCCCCCCEEEEEcCccCcccc----cCCC-cEEEEEeCCHHHHHHHHHc-------CCeEEEeecCCCCC----CCCCc
Q 016157 117 LNSLPSGSLVLDAGCGNGKYLG----LNPD-CFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPY----RSDFG 180 (394)
Q Consensus 117 l~~l~~g~~VLDvGCG~G~~l~----~~~~-~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~lp~----~~~~f 180 (394)
+..+.+|.+|||+|||+|..+. ..++ ..|+|+|+++.+++.++++ +++++.+|+..++. ..+.|
T Consensus 78 ~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~~f 157 (274)
T 3ajd_A 78 VLNPREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVLNTIIINADMRKYKDYLLKNEIFF 157 (274)
T ss_dssp HHCCCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHHTTCCE
T ss_pred HhCCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCChHhcchhhhhccccC
Confidence 3356788999999999999742 2344 7999999999999998876 57889999987754 26789
Q ss_pred cEEEeh------hhhhhcC--------C-hhHHHHHHHHHHhccccCcEEEEEEcCccch
Q 016157 181 DAAISI------AVLHHLS--------T-ESRRKKAIEELVRVVKKGSLVLITVWAVEQE 225 (394)
Q Consensus 181 D~Vi~~------~vl~hl~--------~-~~~~~~~L~ei~r~LkpGG~lli~~~~~~~~ 225 (394)
|+|++. .++++-+ . ......+|+++.++|||||++++++.+....
T Consensus 158 D~Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stcs~~~~ 217 (274)
T 3ajd_A 158 DKILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCSMEVE 217 (274)
T ss_dssp EEEEEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEESCCCTT
T ss_pred CEEEEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCChH
Confidence 999986 2322110 0 0114789999999999999999998766443
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.13 E-value=6.6e-11 Score=111.98 Aligned_cols=96 Identities=14% Similarity=0.162 Sum_probs=79.7
Q ss_pred CCCCCCEEEEEcCccCcccc----c-CCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeecCCCCCCCCCccEEEe
Q 016157 119 SLPSGSLVLDAGCGNGKYLG----L-NPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAIS 185 (394)
Q Consensus 119 ~l~~g~~VLDvGCG~G~~l~----~-~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~lp~~~~~fD~Vi~ 185 (394)
.+.++.+|||+|||+|.++. . .++..++++|+++.+++.|+++ +++++.+|+.+. ++++.||+|++
T Consensus 109 ~~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~~D~V~~ 187 (277)
T 1o54_A 109 DVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEG-FDEKDVDALFL 187 (277)
T ss_dssp TCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGC-CSCCSEEEEEE
T ss_pred CCCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHc-ccCCccCEEEE
Confidence 46788999999999998642 2 4578999999999999999876 367889998876 56678999998
Q ss_pred hhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCcc
Q 016157 186 IAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVE 223 (394)
Q Consensus 186 ~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~~ 223 (394)
+.++ +..+|+++.++|+|||++++..+..+
T Consensus 188 -----~~~~---~~~~l~~~~~~L~pgG~l~~~~~~~~ 217 (277)
T 1o54_A 188 -----DVPD---PWNYIDKCWEALKGGGRFATVCPTTN 217 (277)
T ss_dssp -----CCSC---GGGTHHHHHHHEEEEEEEEEEESSHH
T ss_pred -----CCcC---HHHHHHHHHHHcCCCCEEEEEeCCHH
Confidence 3455 56899999999999999999987543
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=5.8e-11 Score=114.51 Aligned_cols=100 Identities=16% Similarity=0.103 Sum_probs=76.2
Q ss_pred CCCCEEEEEcCccCcccc----cCCCcEEEEEeCCHHHHHHHHHc-----------CCeEEEeecCCCCC--CCCCccEE
Q 016157 121 PSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR-----------GHEVLVADAVNLPY--RSDFGDAA 183 (394)
Q Consensus 121 ~~g~~VLDvGCG~G~~l~----~~~~~~v~gvD~S~~~l~~a~~~-----------~i~~~~~D~~~lp~--~~~~fD~V 183 (394)
+++.+|||||||+|.++. ..+...|+++|+++.+++.|+++ +++++.+|+..++. .+++||+|
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDvI 173 (304)
T 3bwc_A 94 PKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDVV 173 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEEE
T ss_pred CCCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeEE
Confidence 556899999999999753 23457999999999999999874 37899999987653 36899999
Q ss_pred EehhhhhhcCChhHH--HHHHHHHHhccccCcEEEEEEcC
Q 016157 184 ISIAVLHHLSTESRR--KKAIEELVRVVKKGSLVLITVWA 221 (394)
Q Consensus 184 i~~~vl~hl~~~~~~--~~~L~ei~r~LkpGG~lli~~~~ 221 (394)
++....++.+... . ..+++++.++|||||++++....
T Consensus 174 i~d~~~~~~~~~~-l~~~~~l~~~~~~LkpgG~lv~~~~~ 212 (304)
T 3bwc_A 174 IIDTTDPAGPASK-LFGEAFYKDVLRILKPDGICCNQGES 212 (304)
T ss_dssp EEECC----------CCHHHHHHHHHHEEEEEEEEEEECC
T ss_pred EECCCCccccchh-hhHHHHHHHHHHhcCCCcEEEEecCC
Confidence 9977665543211 1 68999999999999999998643
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.13 E-value=3.4e-11 Score=109.88 Aligned_cols=100 Identities=17% Similarity=0.129 Sum_probs=76.8
Q ss_pred HcCCCCCCEEEEEcCccCcccc----cCC-CcEEEEEeCCHHHHHHHHHc--------CCeEEEeecCCC-C-CCC----
Q 016157 117 LNSLPSGSLVLDAGCGNGKYLG----LNP-DCFFVGCDISPSLIKICVDR--------GHEVLVADAVNL-P-YRS---- 177 (394)
Q Consensus 117 l~~l~~g~~VLDvGCG~G~~l~----~~~-~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~l-p-~~~---- 177 (394)
+....++.+|||||||+|..+. ..+ +..|+|+|+++.+++.|+++ .++++++|+.+. + +..
T Consensus 59 l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~ 138 (225)
T 3tr6_A 59 LVKLMQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQA 138 (225)
T ss_dssp HHHHHTCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCT
T ss_pred HHHhhCCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCC
Confidence 3334567799999999998642 233 78999999999999999876 378999998653 2 111
Q ss_pred CCccEEEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCc
Q 016157 178 DFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAV 222 (394)
Q Consensus 178 ~~fD~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~ 222 (394)
++||+|++.... .....+++++.++|||||++++.....
T Consensus 139 ~~fD~v~~~~~~------~~~~~~l~~~~~~L~pgG~lv~~~~~~ 177 (225)
T 3tr6_A 139 WQYDLIYIDADK------ANTDLYYEESLKLLREGGLIAVDNVLR 177 (225)
T ss_dssp TCEEEEEECSCG------GGHHHHHHHHHHHEEEEEEEEEECSSG
T ss_pred CCccEEEECCCH------HHHHHHHHHHHHhcCCCcEEEEeCCCc
Confidence 789999975532 226789999999999999999976543
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.12 E-value=1e-10 Score=114.94 Aligned_cols=105 Identities=16% Similarity=0.057 Sum_probs=82.8
Q ss_pred cCCCCCCEEEEEcCccCccccc----C-CCcEEEEEeCCHHHHHHHHHc-------CCeEEEeecCCCCCCCCCccEEEe
Q 016157 118 NSLPSGSLVLDAGCGNGKYLGL----N-PDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFGDAAIS 185 (394)
Q Consensus 118 ~~l~~g~~VLDvGCG~G~~l~~----~-~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~lp~~~~~fD~Vi~ 185 (394)
....++.+|||+|||+|.++.. . +...++|+|+++.+++.|+++ ++++.++|+.+++.+.+.||+|++
T Consensus 199 ~~~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~~i~~~~~D~~~~~~~~~~~D~Ii~ 278 (354)
T 3tma_A 199 ADARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLSWIRFLRADARHLPRFFPEVDRILA 278 (354)
T ss_dssp TTCCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCTTCEEEECCGGGGGGTCCCCSEEEE
T ss_pred hCCCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCCceEEEeCChhhCccccCCCCEEEE
Confidence 3457788999999999997531 3 668999999999999999987 489999999999877778999999
Q ss_pred hhhhhhcCC-h----hHHHHHHHHHHhccccCcEEEEEEcCc
Q 016157 186 IAVLHHLST-E----SRRKKAIEELVRVVKKGSLVLITVWAV 222 (394)
Q Consensus 186 ~~vl~hl~~-~----~~~~~~L~ei~r~LkpGG~lli~~~~~ 222 (394)
+........ . .....+++++.++|||||++++.++..
T Consensus 279 npPyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t~~~ 320 (354)
T 3tma_A 279 NPPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLTLRP 320 (354)
T ss_dssp CCCSCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEEESCH
T ss_pred CCCCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEeCCH
Confidence 643322111 0 113688999999999999999998653
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.11 E-value=1.2e-10 Score=104.50 Aligned_cols=86 Identities=23% Similarity=0.231 Sum_probs=67.3
Q ss_pred CCCCCEEEEEcCccCccccc---CCCcEEEEEeCCHHHHHHHHHc--CCeEEEeecCCCCCCCCCccEEEehhhhhhcCC
Q 016157 120 LPSGSLVLDAGCGNGKYLGL---NPDCFFVGCDISPSLIKICVDR--GHEVLVADAVNLPYRSDFGDAAISIAVLHHLST 194 (394)
Q Consensus 120 l~~g~~VLDvGCG~G~~l~~---~~~~~v~gvD~S~~~l~~a~~~--~i~~~~~D~~~lp~~~~~fD~Vi~~~vl~hl~~ 194 (394)
..++.+|||+|||+|.++.. .+...++|+|+|+.+++.|+++ +++++++|+.+++ ++||+|+++..++|+..
T Consensus 49 ~~~~~~vlD~gcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~d~~~~~---~~~D~v~~~~p~~~~~~ 125 (200)
T 1ne2_A 49 NIGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCGGVNFMVADVSEIS---GKYDTWIMNPPFGSVVK 125 (200)
T ss_dssp SSBTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCTTSEEEECCGGGCC---CCEEEEEECCCC-----
T ss_pred CCCCCEEEEEeCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHhcCCCEEEECcHHHCC---CCeeEEEECCCchhccC
Confidence 44678999999999997532 3334799999999999999988 7999999999875 68999999999999875
Q ss_pred hhHHHHHHHHHHhcc
Q 016157 195 ESRRKKAIEELVRVV 209 (394)
Q Consensus 195 ~~~~~~~L~ei~r~L 209 (394)
.. ...+++++.++|
T Consensus 126 ~~-~~~~l~~~~~~~ 139 (200)
T 1ne2_A 126 HS-DRAFIDKAFETS 139 (200)
T ss_dssp ---CHHHHHHHHHHE
T ss_pred ch-hHHHHHHHHHhc
Confidence 32 357899999998
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=1.6e-10 Score=106.80 Aligned_cols=104 Identities=11% Similarity=0.091 Sum_probs=81.0
Q ss_pred HHHHHHHcCCCCCCEEEEEcCccCccc----ccCCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeecCC-CCCCC
Q 016157 111 PKVATFLNSLPSGSLVLDAGCGNGKYL----GLNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVN-LPYRS 177 (394)
Q Consensus 111 ~~l~~~l~~l~~g~~VLDvGCG~G~~l----~~~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~-lp~~~ 177 (394)
+++..+...+++|.+|||||||+|.+. ...+...|+|+|+++.+++.|+++ .+++..+|..+ ++. .
T Consensus 4 ~RL~~l~~~v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~l~~-~ 82 (225)
T 3kr9_A 4 KRLELVASFVSQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAAFEE-T 82 (225)
T ss_dssp HHHHHHHTTSCTTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCG-G
T ss_pred HHHHHHHHhCCCCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhhccc-C
Confidence 355666677889999999999999973 234567899999999999999986 37899999865 332 2
Q ss_pred CCccEEEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 016157 178 DFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (394)
Q Consensus 178 ~~fD~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~ 220 (394)
+.||+|+..+.--.+ ...+|.+....|+|+|+|++.--
T Consensus 83 ~~~D~IviaG~Gg~~-----i~~Il~~~~~~L~~~~~lVlq~~ 120 (225)
T 3kr9_A 83 DQVSVITIAGMGGRL-----IARILEEGLGKLANVERLILQPN 120 (225)
T ss_dssp GCCCEEEEEEECHHH-----HHHHHHHTGGGCTTCCEEEEEES
T ss_pred cCCCEEEEcCCChHH-----HHHHHHHHHHHhCCCCEEEEECC
Confidence 369999876543222 57889999999999999998754
|
| >2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=2.2e-10 Score=109.72 Aligned_cols=98 Identities=17% Similarity=0.184 Sum_probs=72.8
Q ss_pred CCCCCCEEEEEcCcc------Cc-cc-ccCC-CcEEEEEeCCHHHHHHHHHcCCeE-EEeecCCCCCCCCCccEEEehhh
Q 016157 119 SLPSGSLVLDAGCGN------GK-YL-GLNP-DCFFVGCDISPSLIKICVDRGHEV-LVADAVNLPYRSDFGDAAISIAV 188 (394)
Q Consensus 119 ~l~~g~~VLDvGCG~------G~-~l-~~~~-~~~v~gvD~S~~~l~~a~~~~i~~-~~~D~~~lp~~~~~fD~Vi~~~v 188 (394)
.++++.+|||+|||+ |. .+ ...+ +..|+|+|+|+. + .++++ +++|+.++++. ++||+|++...
T Consensus 60 ~l~~g~~VLDLGcGsg~~~GpGs~~~a~~~~~~~~V~gvDis~~-v-----~~v~~~i~gD~~~~~~~-~~fD~Vvsn~~ 132 (290)
T 2xyq_A 60 AVPYNMRVIHFGAGSDKGVAPGTAVLRQWLPTGTLLVDSDLNDF-V-----SDADSTLIGDCATVHTA-NKWDLIISDMY 132 (290)
T ss_dssp CCCTTCEEEEESCCCTTSBCHHHHHHHHHSCTTCEEEEEESSCC-B-----CSSSEEEESCGGGCCCS-SCEEEEEECCC
T ss_pred CCCCCCEEEEeCCCCCCCCCcHHHHHHHHcCCCCEEEEEECCCC-C-----CCCEEEEECccccCCcc-CcccEEEEcCC
Confidence 467899999999954 54 12 1233 679999999998 2 37899 99999998764 68999999643
Q ss_pred hh--------hcCChhHHHHHHHHHHhccccCcEEEEEEcCcc
Q 016157 189 LH--------HLSTESRRKKAIEELVRVVKKGSLVLITVWAVE 223 (394)
Q Consensus 189 l~--------hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~~ 223 (394)
.+ +.........+|+++.++|||||+|++.++...
T Consensus 133 ~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~~~~ 175 (290)
T 2xyq_A 133 DPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHS 175 (290)
T ss_dssp CCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSS
T ss_pred ccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEeccC
Confidence 21 111112245899999999999999999887653
|
| >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.09 E-value=2.8e-10 Score=115.52 Aligned_cols=110 Identities=20% Similarity=0.228 Sum_probs=85.0
Q ss_pred HcCCCCCCEEEEEcCccCcccc----cCCC-cEEEEEeCCHHHHHHHHHc-------CCeEEEeecCCCC--CCCCCccE
Q 016157 117 LNSLPSGSLVLDAGCGNGKYLG----LNPD-CFFVGCDISPSLIKICVDR-------GHEVLVADAVNLP--YRSDFGDA 182 (394)
Q Consensus 117 l~~l~~g~~VLDvGCG~G~~l~----~~~~-~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~lp--~~~~~fD~ 182 (394)
+..+.+|.+|||+|||+|..+. ..++ ..++|+|+++.+++.++++ ++.++.+|+..++ +.++.||+
T Consensus 254 ~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~fD~ 333 (450)
T 2yxl_A 254 VLDPKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKDARKAPEIIGEEVADK 333 (450)
T ss_dssp HHCCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCTTCCSSSSCSSCEEE
T ss_pred hcCCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEEEcChhhcchhhccCCCCE
Confidence 3457788999999999998642 2344 7999999999999998876 4688899998876 55578999
Q ss_pred EEe------hhhhhhcCChh------H-------HHHHHHHHHhccccCcEEEEEEcCccchh
Q 016157 183 AIS------IAVLHHLSTES------R-------RKKAIEELVRVVKKGSLVLITVWAVEQED 226 (394)
Q Consensus 183 Vi~------~~vl~hl~~~~------~-------~~~~L~ei~r~LkpGG~lli~~~~~~~~~ 226 (394)
|++ .+++++.++.. . ...+|.++.++|||||++++++.+.....
T Consensus 334 Vl~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs~~~~e 396 (450)
T 2yxl_A 334 VLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCSIFKEE 396 (450)
T ss_dssp EEEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCCGGG
T ss_pred EEEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhh
Confidence 996 44555544311 0 15789999999999999999988765443
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.09 E-value=9.5e-12 Score=116.07 Aligned_cols=97 Identities=18% Similarity=0.057 Sum_probs=75.7
Q ss_pred CCCCCCEEEEEcCccCcccc----cC-CCcEEEEEeCCHHHHHHHHHc--------CCeEEEeecCCCC-CC-----CCC
Q 016157 119 SLPSGSLVLDAGCGNGKYLG----LN-PDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLP-YR-----SDF 179 (394)
Q Consensus 119 ~l~~g~~VLDvGCG~G~~l~----~~-~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~lp-~~-----~~~ 179 (394)
...++.+|||||||+|..+. .. ++..|+|+|+++.+++.|+++ +++++.+|+.+.. .. .++
T Consensus 57 ~~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~~~~~~~~~~ 136 (242)
T 3r3h_A 57 RLTRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLLNEGGEHQ 136 (242)
T ss_dssp HHHTCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHHHHHHHHHCSSC
T ss_pred hhcCcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHhhccCCCC
Confidence 34456799999999998642 23 478999999999998887765 4789999997643 21 478
Q ss_pred ccEEEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 016157 180 GDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 221 (394)
Q Consensus 180 fD~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~ 221 (394)
||+|++.... .....+++++.++|||||++++....
T Consensus 137 fD~V~~d~~~------~~~~~~l~~~~~~LkpGG~lv~d~~~ 172 (242)
T 3r3h_A 137 FDFIFIDADK------TNYLNYYELALKLVTPKGLIAIDNIF 172 (242)
T ss_dssp EEEEEEESCG------GGHHHHHHHHHHHEEEEEEEEEECSS
T ss_pred EeEEEEcCCh------HHhHHHHHHHHHhcCCCeEEEEECCc
Confidence 9999987642 12577999999999999999997543
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=7e-11 Score=110.50 Aligned_cols=96 Identities=16% Similarity=0.062 Sum_probs=75.5
Q ss_pred CCCCCCEEEEEcCccCcccc----cCC-CcEEEEEeCCHHHHHHHHHc--------CCeEEEeecCCC-CC------CCC
Q 016157 119 SLPSGSLVLDAGCGNGKYLG----LNP-DCFFVGCDISPSLIKICVDR--------GHEVLVADAVNL-PY------RSD 178 (394)
Q Consensus 119 ~l~~g~~VLDvGCG~G~~l~----~~~-~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~l-p~------~~~ 178 (394)
...++.+|||||||+|..+. ..+ +..++++|+++.+++.|+++ +++++.+|+.+. +. ..+
T Consensus 76 ~~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~ 155 (247)
T 1sui_A 76 KLINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHG 155 (247)
T ss_dssp HHTTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTT
T ss_pred HhhCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCC
Confidence 34456799999999998642 234 78999999999999999875 368999998763 32 157
Q ss_pred CccEEEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 016157 179 FGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (394)
Q Consensus 179 ~fD~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~ 220 (394)
+||+|++.... .. ...+++++.++|||||++++...
T Consensus 156 ~fD~V~~d~~~---~~---~~~~l~~~~~~LkpGG~lv~d~~ 191 (247)
T 1sui_A 156 SYDFIFVDADK---DN---YLNYHKRLIDLVKVGGVIGYDNT 191 (247)
T ss_dssp CBSEEEECSCS---TT---HHHHHHHHHHHBCTTCCEEEECT
T ss_pred CEEEEEEcCch---HH---HHHHHHHHHHhCCCCeEEEEecC
Confidence 89999987541 22 67899999999999999998753
|
| >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 | Back alignment and structure |
|---|
Probab=99.08 E-value=4.6e-11 Score=116.76 Aligned_cols=106 Identities=12% Similarity=0.030 Sum_probs=77.9
Q ss_pred HHHHHcCCCCCCEEEEEcCccCccccc--CCCcEEEEEeCCHHHHHHHHHc----C-----CeEEEeecCCCCCC----C
Q 016157 113 VATFLNSLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR----G-----HEVLVADAVNLPYR----S 177 (394)
Q Consensus 113 l~~~l~~l~~g~~VLDvGCG~G~~l~~--~~~~~v~gvD~S~~~l~~a~~~----~-----i~~~~~D~~~lp~~----~ 177 (394)
+...+....++.+|||+|||+|.++.. ..+..|+|+|+|+.+++.|+++ + ++++++|+.++... .
T Consensus 144 l~~~~~~~~~~~~VLDlgcGtG~~sl~la~~ga~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~~ 223 (332)
T 2igt_A 144 LKNAVETADRPLKVLNLFGYTGVASLVAAAAGAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRG 223 (332)
T ss_dssp HHHHHHHSSSCCEEEEETCTTCHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHT
T ss_pred HHHHHHhcCCCCcEEEcccccCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHhcC
Confidence 333333235678999999999997432 3455999999999999999876 2 78999998875321 5
Q ss_pred CCccEEEehhh----------hhhcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 016157 178 DFGDAAISIAV----------LHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 221 (394)
Q Consensus 178 ~~fD~Vi~~~v----------l~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~ 221 (394)
++||+|++.-. +++.. ....+++++.++|||||.+++....
T Consensus 224 ~~fD~Ii~dPP~~~~~~~~~~~~~~~---~~~~ll~~~~~~LkpgG~lli~~~~ 274 (332)
T 2igt_A 224 STYDIILTDPPKFGRGTHGEVWQLFD---HLPLMLDICREILSPKALGLVLTAY 274 (332)
T ss_dssp CCBSEEEECCCSEEECTTCCEEEHHH---HHHHHHHHHHHTBCTTCCEEEEEEC
T ss_pred CCceEEEECCccccCCchHHHHHHHH---HHHHHHHHHHHhcCcCcEEEEEECC
Confidence 68999999422 12222 2678999999999999998777644
|
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=99.06 E-value=2.6e-10 Score=108.52 Aligned_cols=96 Identities=15% Similarity=0.158 Sum_probs=74.0
Q ss_pred CCCCEEEEEcCccCcccc---cCCCcEEEEEeC-CHHHHHHHHHc-----------------CCeEEEeecCCCC--C--
Q 016157 121 PSGSLVLDAGCGNGKYLG---LNPDCFFVGCDI-SPSLIKICVDR-----------------GHEVLVADAVNLP--Y-- 175 (394)
Q Consensus 121 ~~g~~VLDvGCG~G~~l~---~~~~~~v~gvD~-S~~~l~~a~~~-----------------~i~~~~~D~~~lp--~-- 175 (394)
.++.+|||||||+|.++. ......|+|+|+ |+.+++.|+++ ++++...|..+.. +
T Consensus 78 ~~~~~vLDlG~G~G~~~~~~a~~~~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 157 (281)
T 3bzb_A 78 IAGKTVCELGAGAGLVSIVAFLAGADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDSLQR 157 (281)
T ss_dssp TTTCEEEETTCTTSHHHHHHHHTTCSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCTHHHHH
T ss_pred cCCCeEEEecccccHHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccHHHHh
Confidence 467899999999998642 222238999999 89999998764 2445555544321 1
Q ss_pred --CCCCccEEEehhhhhhcCChhHHHHHHHHHHhccc---c--CcEEEEEE
Q 016157 176 --RSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVK---K--GSLVLITV 219 (394)
Q Consensus 176 --~~~~fD~Vi~~~vl~hl~~~~~~~~~L~ei~r~Lk---p--GG~lli~~ 219 (394)
.+++||+|++..+++|.+. ...+++.+.++|| | ||++++..
T Consensus 158 ~~~~~~fD~Ii~~dvl~~~~~---~~~ll~~l~~~Lk~~~p~~gG~l~v~~ 205 (281)
T 3bzb_A 158 CTGLQRFQVVLLADLLSFHQA---HDALLRSVKMLLALPANDPTAVALVTF 205 (281)
T ss_dssp HHSCSSBSEEEEESCCSCGGG---HHHHHHHHHHHBCCTTTCTTCEEEEEE
T ss_pred hccCCCCCEEEEeCcccChHH---HHHHHHHHHHHhcccCCCCCCEEEEEE
Confidence 3578999999999999776 7899999999999 9 99987754
|
| >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 | Back alignment and structure |
|---|
Probab=99.06 E-value=2.8e-11 Score=112.81 Aligned_cols=97 Identities=8% Similarity=0.069 Sum_probs=67.9
Q ss_pred CCCEEEEEcCccCcccc----cCCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeecCCC---CCC---CCCccEE
Q 016157 122 SGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNL---PYR---SDFGDAA 183 (394)
Q Consensus 122 ~g~~VLDvGCG~G~~l~----~~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~l---p~~---~~~fD~V 183 (394)
++.+|||+|||+|.++. ..++..|+|+|+|+.|++.|+++ +++++++|+.+. +++ +++||+|
T Consensus 65 ~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~i 144 (254)
T 2h00_A 65 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFC 144 (254)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEE
T ss_pred CCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhhhhhhhcccCCcccEE
Confidence 56799999999998642 23568999999999999999876 278999998762 344 2689999
Q ss_pred EehhhhhhcCC------------hhHHHHHHHHHHhccccCcEEEEE
Q 016157 184 ISIAVLHHLST------------ESRRKKAIEELVRVVKKGSLVLIT 218 (394)
Q Consensus 184 i~~~vl~hl~~------------~~~~~~~L~ei~r~LkpGG~lli~ 218 (394)
+++-..++... .+....++.++.++|||||.+.+.
T Consensus 145 ~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG~l~~~ 191 (254)
T 2h00_A 145 MCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFV 191 (254)
T ss_dssp EECCCCC-------------------------CTTTTHHHHTHHHHH
T ss_pred EECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecCCEEEEE
Confidence 99855444320 011235678999999999998765
|
| >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=99.06 E-value=1.5e-10 Score=107.50 Aligned_cols=93 Identities=14% Similarity=0.186 Sum_probs=62.4
Q ss_pred CCCCEEEEEcCccCccccc--CCC-cEEEEEeCCHHHHHHHHHcCCeEEEe---ecCCCC---CCCCCccEEEehhhhhh
Q 016157 121 PSGSLVLDAGCGNGKYLGL--NPD-CFFVGCDISPSLIKICVDRGHEVLVA---DAVNLP---YRSDFGDAAISIAVLHH 191 (394)
Q Consensus 121 ~~g~~VLDvGCG~G~~l~~--~~~-~~v~gvD~S~~~l~~a~~~~i~~~~~---D~~~lp---~~~~~fD~Vi~~~vl~h 191 (394)
.++.+|||||||+|.++.. ..+ ..|+|+|+|+.|++.|+++.-.+... ++..+. +....||.+.+..++.+
T Consensus 36 ~~g~~VLDiGcGtG~~t~~la~~g~~~V~gvDis~~ml~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~D~v~~~ 115 (232)
T 3opn_A 36 INGKTCLDIGSSTGGFTDVMLQNGAKLVYALDVGTNQLAWKIRSDERVVVMEQFNFRNAVLADFEQGRPSFTSIDVSFIS 115 (232)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSCCCCCHHHHTCTTEEEECSCCGGGCCGGGCCSCCCSEEEECCSSSC
T ss_pred CCCCEEEEEccCCCHHHHHHHhcCCCEEEEEcCCHHHHHHHHHhCccccccccceEEEeCHhHcCcCCCCEEEEEEEhhh
Confidence 4567999999999997632 224 49999999999999988763332221 221111 11112455444444433
Q ss_pred cCChhHHHHHHHHHHhccccCcEEEEEE
Q 016157 192 LSTESRRKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 192 l~~~~~~~~~L~ei~r~LkpGG~lli~~ 219 (394)
+ ..+|+++.|+|||||++++.+
T Consensus 116 l------~~~l~~i~rvLkpgG~lv~~~ 137 (232)
T 3opn_A 116 L------DLILPPLYEILEKNGEVAALI 137 (232)
T ss_dssp G------GGTHHHHHHHSCTTCEEEEEE
T ss_pred H------HHHHHHHHHhccCCCEEEEEE
Confidence 3 468999999999999999975
|
| >3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=5.8e-10 Score=104.52 Aligned_cols=97 Identities=21% Similarity=0.340 Sum_probs=78.4
Q ss_pred CCCCCCEEEEEcCccCccccc----CCCcEEEEEeCCHHHHHHHHHc------CCeEEEeecCCCCCCCCCccEEEehhh
Q 016157 119 SLPSGSLVLDAGCGNGKYLGL----NPDCFFVGCDISPSLIKICVDR------GHEVLVADAVNLPYRSDFGDAAISIAV 188 (394)
Q Consensus 119 ~l~~g~~VLDvGCG~G~~l~~----~~~~~v~gvD~S~~~l~~a~~~------~i~~~~~D~~~lp~~~~~fD~Vi~~~v 188 (394)
.+++..+|||||||+|.++.. .+...|+|+|+++.|++.++++ +..+.+.|...-+ +.+.||++++.-+
T Consensus 129 ~i~~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g~~~~~~v~D~~~~~-p~~~~DvaL~lkt 207 (281)
T 3lcv_B 129 HLPRPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNVPHRTNVADLLEDR-LDEPADVTLLLKT 207 (281)
T ss_dssp GSCCCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTTCCEEEEECCTTTSC-CCSCCSEEEETTC
T ss_pred ccCCCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEeeecccC-CCCCcchHHHHHH
Confidence 456567999999999998542 4778999999999999999887 3567788887655 3678999999999
Q ss_pred hhhcCChhHHHHHHHHHHhccccCcEEEEE
Q 016157 189 LHHLSTESRRKKAIEELVRVVKKGSLVLIT 218 (394)
Q Consensus 189 l~hl~~~~~~~~~L~ei~r~LkpGG~lli~ 218 (394)
+||+.+.. ....+ ++...|+|+|.++-.
T Consensus 208 i~~Le~q~-kg~g~-~ll~aL~~~~vvVSf 235 (281)
T 3lcv_B 208 LPCLETQQ-RGSGW-EVIDIVNSPNIVVTF 235 (281)
T ss_dssp HHHHHHHS-TTHHH-HHHHHSSCSEEEEEE
T ss_pred HHHhhhhh-hHHHH-HHHHHhCCCCEEEec
Confidence 99997644 34555 999999999886654
|
| >4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.04 E-value=1.1e-10 Score=115.63 Aligned_cols=96 Identities=21% Similarity=0.172 Sum_probs=73.6
Q ss_pred CCCCEEEEEcCccCcccc--cCCC-cEEEEEeCCHHHHHHHHHc--------CCeEEEeecCCCCCCCCCccEEEehhhh
Q 016157 121 PSGSLVLDAGCGNGKYLG--LNPD-CFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISIAVL 189 (394)
Q Consensus 121 ~~g~~VLDvGCG~G~~l~--~~~~-~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~lp~~~~~fD~Vi~~~vl 189 (394)
-+|.+|||||||+|.+.- +..| .+|+|||.|+ |++.|++. .++++.+|++++.++ +.||+|++-..-
T Consensus 82 ~~~k~VLDvG~GtGiLs~~Aa~aGA~~V~ave~s~-~~~~a~~~~~~n~~~~~i~~i~~~~~~~~lp-e~~DvivsE~~~ 159 (376)
T 4hc4_A 82 LRGKTVLDVGAGTGILSIFCAQAGARRVYAVEASA-IWQQAREVVRFNGLEDRVHVLPGPVETVELP-EQVDAIVSEWMG 159 (376)
T ss_dssp HTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-THHHHHHHHHHTTCTTTEEEEESCTTTCCCS-SCEEEEECCCCB
T ss_pred cCCCEEEEeCCCccHHHHHHHHhCCCEEEEEeChH-HHHHHHHHHHHcCCCceEEEEeeeeeeecCC-ccccEEEeeccc
Confidence 368899999999998632 2334 4899999985 78887764 478999999998875 689999995443
Q ss_pred hhcCChhHHHHHHHHHHhccccCcEEEEE
Q 016157 190 HHLSTESRRKKAIEELVRVVKKGSLVLIT 218 (394)
Q Consensus 190 ~hl~~~~~~~~~L~ei~r~LkpGG~lli~ 218 (394)
..+..+.....++....|+|||||.++-.
T Consensus 160 ~~l~~e~~l~~~l~a~~r~Lkp~G~~iP~ 188 (376)
T 4hc4_A 160 YGLLHESMLSSVLHARTKWLKEGGLLLPA 188 (376)
T ss_dssp TTBTTTCSHHHHHHHHHHHEEEEEEEESC
T ss_pred ccccccchhhhHHHHHHhhCCCCceECCc
Confidence 44433333788899999999999998743
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.04 E-value=1.3e-10 Score=107.42 Aligned_cols=97 Identities=13% Similarity=0.124 Sum_probs=75.9
Q ss_pred CCCCCCEEEEEcCccCcccc----cCC-CcEEEEEeCCHHHHHHHHHc--------CCeEEEeecCCC-C----------
Q 016157 119 SLPSGSLVLDAGCGNGKYLG----LNP-DCFFVGCDISPSLIKICVDR--------GHEVLVADAVNL-P---------- 174 (394)
Q Consensus 119 ~l~~g~~VLDvGCG~G~~l~----~~~-~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~l-p---------- 174 (394)
.+.++.+|||||||+|..+. ..+ +..++++|+++.+++.|+++ .++++.+|+.+. +
T Consensus 57 ~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~ 136 (239)
T 2hnk_A 57 KISGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPS 136 (239)
T ss_dssp HHHTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCG
T ss_pred HhhCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhccccc
Confidence 34567899999999998643 233 67999999999999999876 278899987652 2
Q ss_pred ----CCC--CCccEEEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 016157 175 ----YRS--DFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 221 (394)
Q Consensus 175 ----~~~--~~fD~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~ 221 (394)
|++ ++||+|++.....+ ...+++++.++|||||++++....
T Consensus 137 ~~~~f~~~~~~fD~I~~~~~~~~------~~~~l~~~~~~L~pgG~lv~~~~~ 183 (239)
T 2hnk_A 137 WASDFAFGPSSIDLFFLDADKEN------YPNYYPLILKLLKPGGLLIADNVL 183 (239)
T ss_dssp GGTTTCCSTTCEEEEEECSCGGG------HHHHHHHHHHHEEEEEEEEEECSS
T ss_pred ccccccCCCCCcCEEEEeCCHHH------HHHHHHHHHHHcCCCeEEEEEccc
Confidence 222 78999999865332 568899999999999999997643
|
| >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.03 E-value=2e-10 Score=111.23 Aligned_cols=98 Identities=13% Similarity=0.142 Sum_probs=76.5
Q ss_pred CEEEEEcCccCcccc----cCCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeecCCC--CCCCCCccEEEehhhhh
Q 016157 124 SLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNL--PYRSDFGDAAISIAVLH 190 (394)
Q Consensus 124 ~~VLDvGCG~G~~l~----~~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~l--p~~~~~fD~Vi~~~vl~ 190 (394)
.+|||||||+|.++. ..++.+++++|+++.+++.|+++ +++++.+|+... .+.+++||+|++....+
T Consensus 91 ~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~~~ 170 (317)
T 3gjy_A 91 LRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAESFTPASRDVIIRDVFAG 170 (317)
T ss_dssp CEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHTCCTTCEEEEEECCSTT
T ss_pred CEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHHhhccCCCCCEEEECCCCc
Confidence 499999999999754 26788999999999999999986 478999998764 23467899999964433
Q ss_pred hcCChh-HHHHHHHHHHhccccCcEEEEEEcC
Q 016157 191 HLSTES-RRKKAIEELVRVVKKGSLVLITVWA 221 (394)
Q Consensus 191 hl~~~~-~~~~~L~ei~r~LkpGG~lli~~~~ 221 (394)
.-.... ....+++++.++|||||+|++....
T Consensus 171 ~~~~~~L~t~efl~~~~r~LkpgGvlv~~~~~ 202 (317)
T 3gjy_A 171 AITPQNFTTVEFFEHCHRGLAPGGLYVANCGD 202 (317)
T ss_dssp SCCCGGGSBHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred cccchhhhHHHHHHHHHHhcCCCcEEEEEecC
Confidence 211110 0268999999999999999998763
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=99.03 E-value=2.3e-10 Score=105.67 Aligned_cols=97 Identities=20% Similarity=0.160 Sum_probs=75.4
Q ss_pred CCCCCEEEEEcCccCcccc----cCC-CcEEEEEeCCHHHHHHHHHc--------CCeEEEeecCC----CCCCC--CCc
Q 016157 120 LPSGSLVLDAGCGNGKYLG----LNP-DCFFVGCDISPSLIKICVDR--------GHEVLVADAVN----LPYRS--DFG 180 (394)
Q Consensus 120 l~~g~~VLDvGCG~G~~l~----~~~-~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~----lp~~~--~~f 180 (394)
..++.+|||||||+|..+. ..+ +..++++|+++.+++.|+++ .++++.+|+.+ ++..+ ++|
T Consensus 70 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~f 149 (232)
T 3cbg_A 70 LTGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEF 149 (232)
T ss_dssp HHTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCE
T ss_pred hcCCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCc
Confidence 3456799999999998642 233 67999999999999999875 37889999754 23333 789
Q ss_pred cEEEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCc
Q 016157 181 DAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAV 222 (394)
Q Consensus 181 D~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~ 222 (394)
|+|++.... .....+++++.++|||||++++.....
T Consensus 150 D~V~~d~~~------~~~~~~l~~~~~~LkpgG~lv~~~~~~ 185 (232)
T 3cbg_A 150 DLIFIDADK------RNYPRYYEIGLNLLRRGGLMVIDNVLW 185 (232)
T ss_dssp EEEEECSCG------GGHHHHHHHHHHTEEEEEEEEEECTTG
T ss_pred CEEEECCCH------HHHHHHHHHHHHHcCCCeEEEEeCCCc
Confidence 999987542 126789999999999999999976543
|
| >1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A | Back alignment and structure |
|---|
Probab=99.03 E-value=6.2e-10 Score=112.29 Aligned_cols=108 Identities=16% Similarity=0.175 Sum_probs=84.0
Q ss_pred cCCCCCCEEEEEcCccCcccc----cCCCcEEEEEeCCHHHHHHHHHc------CCeEEEeecCCCC--CCCCCccEEEe
Q 016157 118 NSLPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR------GHEVLVADAVNLP--YRSDFGDAAIS 185 (394)
Q Consensus 118 ~~l~~g~~VLDvGCG~G~~l~----~~~~~~v~gvD~S~~~l~~a~~~------~i~~~~~D~~~lp--~~~~~fD~Vi~ 185 (394)
....+|.+|||+|||+|..+. ..++..|+|+|+++.+++.++++ ++.++.+|+..++ +.++.||+|++
T Consensus 242 l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~ 321 (429)
T 1sqg_A 242 LAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFDRILL 321 (429)
T ss_dssp HCCCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHTTCCEEEEEE
T ss_pred cCCCCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCCCeEEEeCchhhchhhcccCCCCEEEE
Confidence 356788999999999998642 34558999999999999998876 4788999998876 55678999996
Q ss_pred ------hhhhhhcCChh------H-------HHHHHHHHHhccccCcEEEEEEcCccch
Q 016157 186 ------IAVLHHLSTES------R-------RKKAIEELVRVVKKGSLVLITVWAVEQE 225 (394)
Q Consensus 186 ------~~vl~hl~~~~------~-------~~~~L~ei~r~LkpGG~lli~~~~~~~~ 225 (394)
.+++++.++.. . ...+|.++.++|||||++++++.+....
T Consensus 322 D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystcs~~~~ 380 (429)
T 1sqg_A 322 DAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLPE 380 (429)
T ss_dssp ECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCCGG
T ss_pred eCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCChh
Confidence 34555544310 0 1588999999999999999998766443
|
| >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=4.2e-11 Score=115.64 Aligned_cols=102 Identities=12% Similarity=0.080 Sum_probs=72.7
Q ss_pred CCCCCCEEEEEcCccCccccc--CCCcEEEEEeC----CHHHHHHHH-H----cCCeEEEe-ecCCCCCCCCCccEEEeh
Q 016157 119 SLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDI----SPSLIKICV-D----RGHEVLVA-DAVNLPYRSDFGDAAISI 186 (394)
Q Consensus 119 ~l~~g~~VLDvGCG~G~~l~~--~~~~~v~gvD~----S~~~l~~a~-~----~~i~~~~~-D~~~lp~~~~~fD~Vi~~ 186 (394)
.++++.+|||||||+|.++.. .. ..|+|+|+ ++.+++.+. + .++.++++ |+..++ .++||+|+|.
T Consensus 79 ~~~~g~~VLDlGcG~G~~s~~la~~-~~V~gvD~~~~~~~~~~~~~~~~~~~~~~v~~~~~~D~~~l~--~~~fD~V~sd 155 (305)
T 2p41_A 79 LVTPEGKVVDLGCGRGGWSYYCGGL-KNVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSGVDVFFIP--PERCDTLLCD 155 (305)
T ss_dssp SSCCCEEEEEETCTTSHHHHHHHTS-TTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCTTTSC--CCCCSEEEEC
T ss_pred CCCCCCEEEEEcCCCCHHHHHHHhc-CCEEEEeccccCchhHHHHHHhhhcCCCCeEEEeccccccCC--cCCCCEEEEC
Confidence 357889999999999997542 22 57999999 565443221 1 25788888 888775 4689999997
Q ss_pred hhhh---hcCChhHHHHHHHHHHhccccCcEEEEEEcCcc
Q 016157 187 AVLH---HLSTESRRKKAIEELVRVVKKGSLVLITVWAVE 223 (394)
Q Consensus 187 ~vl~---hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~~ 223 (394)
..++ +..+..+...+|..+.++|||||.|++.++..+
T Consensus 156 ~~~~~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~kv~~~~ 195 (305)
T 2p41_A 156 IGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLNPY 195 (305)
T ss_dssp CCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESCCC
T ss_pred CccccCcchhhHHHHHHHHHHHHHHhCCCCEEEEEeCCCC
Confidence 6542 222222122589999999999999999888654
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=99.00 E-value=2.5e-10 Score=104.30 Aligned_cols=97 Identities=15% Similarity=0.116 Sum_probs=75.1
Q ss_pred cCCCCCCEEEEEcCccCcccc----cCC-CcEEEEEeCCHHHHHHHHHc--------CCeEEEeecCCC-C-CCC----C
Q 016157 118 NSLPSGSLVLDAGCGNGKYLG----LNP-DCFFVGCDISPSLIKICVDR--------GHEVLVADAVNL-P-YRS----D 178 (394)
Q Consensus 118 ~~l~~g~~VLDvGCG~G~~l~----~~~-~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~l-p-~~~----~ 178 (394)
..+.++.+|||||||+|..+. ..+ +..++++|+++.+++.|+++ +++++.+|+.+. + +.. +
T Consensus 65 ~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~ 144 (229)
T 2avd_A 65 ARLIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAG 144 (229)
T ss_dssp HHHTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTT
T ss_pred HHhcCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCC
Confidence 344567899999999998642 233 67999999999999999875 478899998653 1 211 6
Q ss_pred CccEEEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 016157 179 FGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (394)
Q Consensus 179 ~fD~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~ 220 (394)
+||+|++... ... ...+++++.++|||||.+++...
T Consensus 145 ~~D~v~~d~~---~~~---~~~~l~~~~~~L~pgG~lv~~~~ 180 (229)
T 2avd_A 145 TFDVAVVDAD---KEN---CSAYYERCLQLLRPGGILAVLRV 180 (229)
T ss_dssp CEEEEEECSC---STT---HHHHHHHHHHHEEEEEEEEEECC
T ss_pred CccEEEECCC---HHH---HHHHHHHHHHHcCCCeEEEEECC
Confidence 8999998654 112 57899999999999999999754
|
| >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A | Back alignment and structure |
|---|
Probab=99.00 E-value=4.9e-10 Score=109.51 Aligned_cols=100 Identities=19% Similarity=0.213 Sum_probs=75.0
Q ss_pred CCCCCEEEEEcCccCcccc----cCCCcEEEEEeCCHHHHHHHHHc-----------CCeEEEeecCCC-C-CCCCCccE
Q 016157 120 LPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR-----------GHEVLVADAVNL-P-YRSDFGDA 182 (394)
Q Consensus 120 l~~g~~VLDvGCG~G~~l~----~~~~~~v~gvD~S~~~l~~a~~~-----------~i~~~~~D~~~l-p-~~~~~fD~ 182 (394)
.+.+.+|||||||+|..+. ..+..+|+++|+|+.+++.|+++ +++++.+|+.+. + +.+++||+
T Consensus 118 ~~~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fDl 197 (334)
T 1xj5_A 118 IPNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDA 197 (334)
T ss_dssp SSCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEE
T ss_pred CCCCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCccE
Confidence 3456799999999998643 34567999999999999999864 478899998764 2 34578999
Q ss_pred EEehhhhhh-cCChhHHHHHHHHHHhccccCcEEEEEE
Q 016157 183 AISIAVLHH-LSTESRRKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 183 Vi~~~vl~h-l~~~~~~~~~L~ei~r~LkpGG~lli~~ 219 (394)
|++.....+ .........+++++.++|||||+|++..
T Consensus 198 Ii~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 235 (334)
T 1xj5_A 198 VIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQA 235 (334)
T ss_dssp EEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEEC
T ss_pred EEECCCCccCcchhhhHHHHHHHHHHhcCCCcEEEEec
Confidence 998653211 1110003689999999999999999974
|
| >3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=6.5e-10 Score=103.14 Aligned_cols=96 Identities=21% Similarity=0.267 Sum_probs=76.8
Q ss_pred CCCCEEEEEcCccCcccc-cCCCcEEEEEeCCHHHHHHHHHc----C--CeEEEeecCCCCCCCCCccEEEehhhhhhcC
Q 016157 121 PSGSLVLDAGCGNGKYLG-LNPDCFFVGCDISPSLIKICVDR----G--HEVLVADAVNLPYRSDFGDAAISIAVLHHLS 193 (394)
Q Consensus 121 ~~g~~VLDvGCG~G~~l~-~~~~~~v~gvD~S~~~l~~a~~~----~--i~~~~~D~~~lp~~~~~fD~Vi~~~vl~hl~ 193 (394)
.+..+|||||||+|.++. ..+...|+|+|+++.|++.+++. + ..+..+|....+++ ++||+|++.-++||+.
T Consensus 104 ~~p~~VLDlGCG~gpLal~~~~~~~y~a~DId~~~i~~ar~~~~~~g~~~~~~v~D~~~~~~~-~~~DvvLllk~lh~LE 182 (253)
T 3frh_A 104 ETPRRVLDIACGLNPLALYERGIASVWGCDIHQGLGDVITPFAREKDWDFTFALQDVLCAPPA-EAGDLALIFKLLPLLE 182 (253)
T ss_dssp CCCSEEEEETCTTTHHHHHHTTCSEEEEEESBHHHHHHHHHHHHHTTCEEEEEECCTTTSCCC-CBCSEEEEESCHHHHH
T ss_pred CCCCeEEEecCCccHHHHHhccCCeEEEEeCCHHHHHHHHHHHHhcCCCceEEEeecccCCCC-CCcchHHHHHHHHHhh
Confidence 566799999999999853 24788999999999999999887 3 46788899887764 4899999999999997
Q ss_pred ChhHHHHHHHHHHhccccCcEEEEEEc
Q 016157 194 TESRRKKAIEELVRVVKKGSLVLITVW 220 (394)
Q Consensus 194 ~~~~~~~~L~ei~r~LkpGG~lli~~~ 220 (394)
+.+ +...+ ++...|+++|.+ |+++
T Consensus 183 ~q~-~~~~~-~ll~aL~~~~vv-VsfP 206 (253)
T 3frh_A 183 REQ-AGSAM-ALLQSLNTPRMA-VSFP 206 (253)
T ss_dssp HHS-TTHHH-HHHHHCBCSEEE-EEEE
T ss_pred hhc-hhhHH-HHHHHhcCCCEE-EEcC
Confidence 654 33444 888899998654 4554
|
| >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=3.5e-10 Score=109.57 Aligned_cols=100 Identities=17% Similarity=0.084 Sum_probs=76.5
Q ss_pred CCCCEEEEEcCccCcccc----cCCCcEEEEEeCCHHHHHHHHHc------------CCeEEEeecCC-CCCCCCCccEE
Q 016157 121 PSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR------------GHEVLVADAVN-LPYRSDFGDAA 183 (394)
Q Consensus 121 ~~g~~VLDvGCG~G~~l~----~~~~~~v~gvD~S~~~l~~a~~~------------~i~~~~~D~~~-lp~~~~~fD~V 183 (394)
+.+.+|||||||+|..+. ..+..+++++|+++.+++.|+++ +++++.+|+.+ ++..+++||+|
T Consensus 76 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~I 155 (314)
T 1uir_A 76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVV 155 (314)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEE
T ss_pred CCCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccEE
Confidence 455799999999999753 23567999999999999999864 36889999876 34446789999
Q ss_pred Eehhhhhh-c-CChhH--HHHHHHHHHhccccCcEEEEEEc
Q 016157 184 ISIAVLHH-L-STESR--RKKAIEELVRVVKKGSLVLITVW 220 (394)
Q Consensus 184 i~~~vl~h-l-~~~~~--~~~~L~ei~r~LkpGG~lli~~~ 220 (394)
++....++ . ..... ...+++++.++|||||++++...
T Consensus 156 i~d~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~ 196 (314)
T 1uir_A 156 IIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTG 196 (314)
T ss_dssp EEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEE
T ss_pred EECCCCcccccCcchhccHHHHHHHHHHhcCCCcEEEEEcc
Confidence 99765543 0 10111 26899999999999999999753
|
| >2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.98 E-value=8.8e-10 Score=112.73 Aligned_cols=104 Identities=14% Similarity=0.181 Sum_probs=80.0
Q ss_pred CCCEEEEEcCccCcccc----c-CCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeecCCCCC-CCCCccEEEeh--
Q 016157 122 SGSLVLDAGCGNGKYLG----L-NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPY-RSDFGDAAISI-- 186 (394)
Q Consensus 122 ~g~~VLDvGCG~G~~l~----~-~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~lp~-~~~~fD~Vi~~-- 186 (394)
+|.+|||+|||+|..+. . .....|+|+|+|+.+++.++++ ++.++++|+..++. .+++||.|++.
T Consensus 117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~nv~~~~~D~~~~~~~~~~~fD~Il~D~P 196 (479)
T 2frx_A 117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAILLDAP 196 (479)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCCSTTHHHHSTTCEEEEEEECC
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCCHHHhhhhccccCCEEEECCC
Confidence 88999999999998642 2 3457999999999999998876 46788999988763 46789999972
Q ss_pred ----hhhhhcCCh-------------hHHHHHHHHHHhccccCcEEEEEEcCccch
Q 016157 187 ----AVLHHLSTE-------------SRRKKAIEELVRVVKKGSLVLITVWAVEQE 225 (394)
Q Consensus 187 ----~vl~hl~~~-------------~~~~~~L~ei~r~LkpGG~lli~~~~~~~~ 225 (394)
.++.+-++. .....+|.++.++|||||+|++++.+....
T Consensus 197 cSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTcs~~~~ 252 (479)
T 2frx_A 197 CSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCTLNQE 252 (479)
T ss_dssp CCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCSST
T ss_pred cCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEecccCCcc
Confidence 344443321 113578999999999999999998766443
|
| >2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=5.5e-10 Score=107.72 Aligned_cols=100 Identities=18% Similarity=0.152 Sum_probs=74.1
Q ss_pred CCCCEEEEEcCccCcccc----cCCCcEEEEEeCCHHHHHHHHHc-----------CCeEEEeecCC-CCCCCCCccEEE
Q 016157 121 PSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR-----------GHEVLVADAVN-LPYRSDFGDAAI 184 (394)
Q Consensus 121 ~~g~~VLDvGCG~G~~l~----~~~~~~v~gvD~S~~~l~~a~~~-----------~i~~~~~D~~~-lp~~~~~fD~Vi 184 (394)
+.+.+|||||||+|..+. ..+..+++++|+++.+++.|+++ +++++.+|+.+ ++..+++||+|+
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD~Ii 173 (304)
T 2o07_A 94 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVII 173 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEE
T ss_pred CCCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCceEEE
Confidence 456799999999999743 23457999999999999999864 36889999876 344467899999
Q ss_pred ehhhhhhcCCh-hHHHHHHHHHHhccccCcEEEEEEc
Q 016157 185 SIAVLHHLSTE-SRRKKAIEELVRVVKKGSLVLITVW 220 (394)
Q Consensus 185 ~~~vl~hl~~~-~~~~~~L~ei~r~LkpGG~lli~~~ 220 (394)
+....+..+.. .....+++++.++|||||++++...
T Consensus 174 ~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~ 210 (304)
T 2o07_A 174 TDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQGE 210 (304)
T ss_dssp EECC-----------CHHHHHHHHHEEEEEEEEEEEE
T ss_pred ECCCCCCCcchhhhHHHHHHHHHhccCCCeEEEEecC
Confidence 86544322110 0135789999999999999999863
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=6.3e-10 Score=106.85 Aligned_cols=101 Identities=14% Similarity=0.103 Sum_probs=73.5
Q ss_pred CCCCEEEEEcCccCcccc----cCCCcEEEEEeCCHHHHHHHHHc-----------CCeEEEeecCC-CCCCCCCccEEE
Q 016157 121 PSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR-----------GHEVLVADAVN-LPYRSDFGDAAI 184 (394)
Q Consensus 121 ~~g~~VLDvGCG~G~~l~----~~~~~~v~gvD~S~~~l~~a~~~-----------~i~~~~~D~~~-lp~~~~~fD~Vi 184 (394)
+.+.+|||||||+|..+. ..+..+|+++|+++.+++.|+++ +++++.+|+.. ++..+++||+|+
T Consensus 89 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii 168 (296)
T 1inl_A 89 PNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVII 168 (296)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEE
T ss_pred CCCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEEE
Confidence 345799999999999743 23557999999999999999864 46889999866 344467899999
Q ss_pred ehhhhhhcCChh--HHHHHHHHHHhccccCcEEEEEEcC
Q 016157 185 SIAVLHHLSTES--RRKKAIEELVRVVKKGSLVLITVWA 221 (394)
Q Consensus 185 ~~~vl~hl~~~~--~~~~~L~ei~r~LkpGG~lli~~~~ 221 (394)
+...-+++.... ....+++++.++|||||++++...+
T Consensus 169 ~d~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~ 207 (296)
T 1inl_A 169 IDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETED 207 (296)
T ss_dssp EEC----------CCSHHHHHHHHHHEEEEEEEEEECCC
T ss_pred EcCCCcccCchhhhhHHHHHHHHHHhcCCCcEEEEEccC
Confidence 854322121110 0268999999999999999997543
|
| >2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} | Back alignment and structure |
|---|
Probab=98.97 E-value=8.7e-10 Score=109.18 Aligned_cols=95 Identities=13% Similarity=-0.025 Sum_probs=75.8
Q ss_pred CCCCEEEEEcCccCcccc----cCCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeecCC-CCC-CCCCccEEEehh
Q 016157 121 PSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVN-LPY-RSDFGDAAISIA 187 (394)
Q Consensus 121 ~~g~~VLDvGCG~G~~l~----~~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~-lp~-~~~~fD~Vi~~~ 187 (394)
.++.+|||+| |+|.++. ..+...|+|+|+++.|++.|+++ +++++++|+.+ +|. .+++||+|++..
T Consensus 171 ~~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~~~v~~~~~D~~~~l~~~~~~~fD~Vi~~~ 249 (373)
T 2qm3_A 171 LENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGYEDIEIFTFDLRKPLPDYALHKFDTFITDP 249 (373)
T ss_dssp STTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTCCCEEEECCCTTSCCCTTTSSCBSEEEECC
T ss_pred CCCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEEChhhhhchhhccCCccEEEECC
Confidence 3678999999 9999753 24557999999999999999886 47899999998 764 356899999986
Q ss_pred hhhhcCChhHHHHHHHHHHhccccCcEE-EEEEc
Q 016157 188 VLHHLSTESRRKKAIEELVRVVKKGSLV-LITVW 220 (394)
Q Consensus 188 vl~hl~~~~~~~~~L~ei~r~LkpGG~l-li~~~ 220 (394)
.+++. . ...+++++.++|||||++ ++.+.
T Consensus 250 p~~~~---~-~~~~l~~~~~~LkpgG~~~~~~~~ 279 (373)
T 2qm3_A 250 PETLE---A-IRAFVGRGIATLKGPRCAGYFGIT 279 (373)
T ss_dssp CSSHH---H-HHHHHHHHHHTBCSTTCEEEEEEC
T ss_pred CCchH---H-HHHHHHHHHHHcccCCeEEEEEEe
Confidence 55443 1 478999999999999955 44443
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=98.97 E-value=4.5e-10 Score=104.11 Aligned_cols=100 Identities=20% Similarity=0.133 Sum_probs=76.3
Q ss_pred HHHcCCCCCCEEEEEcCccCcccc----cCC-CcEEEEEeCCHHHHHHHHHc--------CCeEEEeecCCC-C-C----
Q 016157 115 TFLNSLPSGSLVLDAGCGNGKYLG----LNP-DCFFVGCDISPSLIKICVDR--------GHEVLVADAVNL-P-Y---- 175 (394)
Q Consensus 115 ~~l~~l~~g~~VLDvGCG~G~~l~----~~~-~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~l-p-~---- 175 (394)
..+....++.+|||||||+|..+. ..+ +..++++|+++.+++.|+++ .++++.+|+.+. + +
T Consensus 63 ~~l~~~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~ 142 (237)
T 3c3y_A 63 SFVLKLVNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQ 142 (237)
T ss_dssp HHHHHHTTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHST
T ss_pred HHHHHhhCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcc
Confidence 333334556799999999998642 234 78999999999999999875 368899998763 2 2
Q ss_pred -CCCCccEEEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 016157 176 -RSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (394)
Q Consensus 176 -~~~~fD~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~ 220 (394)
..++||+|++.... .....+++++.++|||||++++...
T Consensus 143 ~~~~~fD~I~~d~~~------~~~~~~l~~~~~~L~pGG~lv~d~~ 182 (237)
T 3c3y_A 143 ESEGSYDFGFVDADK------PNYIKYHERLMKLVKVGGIVAYDNT 182 (237)
T ss_dssp TCTTCEEEEEECSCG------GGHHHHHHHHHHHEEEEEEEEEECT
T ss_pred CCCCCcCEEEECCch------HHHHHHHHHHHHhcCCCeEEEEecC
Confidence 15789999986432 2267899999999999999988753
|
| >1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=98.96 E-value=1.6e-10 Score=110.36 Aligned_cols=92 Identities=27% Similarity=0.352 Sum_probs=68.0
Q ss_pred CCCCCEEEEEcCccCccccc--CCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeecCCCCCCCCCccEEEehh--
Q 016157 120 LPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISIA-- 187 (394)
Q Consensus 120 l~~g~~VLDvGCG~G~~l~~--~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~lp~~~~~fD~Vi~~~-- 187 (394)
+.++.+|||||||+|.++.. ..+..|+|+|+++.|++.++++ +++++++|+..++++ .||+|+++.
T Consensus 26 ~~~~~~VLDiG~G~G~lt~~L~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~~~~~~--~fD~vv~nlpy 103 (285)
T 1zq9_A 26 LRPTDVVLEVGPGTGNMTVKLLEKAKKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLP--FFDTCVANLPY 103 (285)
T ss_dssp CCTTCEEEEECCTTSTTHHHHHHHSSEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCCC--CCSEEEEECCG
T ss_pred CCCCCEEEEEcCcccHHHHHHHhhCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcceecccch--hhcEEEEecCc
Confidence 46788999999999998642 2356999999999999999875 468999999988764 799999963
Q ss_pred ---------hhhhcCChhHHHHHH----HHH--HhccccCcEEE
Q 016157 188 ---------VLHHLSTESRRKKAI----EEL--VRVVKKGSLVL 216 (394)
Q Consensus 188 ---------vl~hl~~~~~~~~~L----~ei--~r~LkpGG~ll 216 (394)
+++|.+... .++ +|+ .++|+|||.++
T Consensus 104 ~~~~~~~~~~l~~~~~~~---~~~~m~qkEva~r~vlkPGg~~y 144 (285)
T 1zq9_A 104 QISSPFVFKLLLHRPFFR---CAILMFQREFALRLVAKPGDKLY 144 (285)
T ss_dssp GGHHHHHHHHHHCSSCCS---EEEEEEEHHHHHHHHCCTTCTTC
T ss_pred ccchHHHHHHHhcCcchh---hhhhhhhHHHHHHHhcCCCCccc
Confidence 444443311 111 233 36899999863
|
| >2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=5.9e-10 Score=106.31 Aligned_cols=99 Identities=15% Similarity=0.122 Sum_probs=75.8
Q ss_pred CCCCEEEEEcCccCcccc----cCCCcEEEEEeCCHHHHHHHHHc-----------CCeEEEeecCCC-CCCCCCccEEE
Q 016157 121 PSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR-----------GHEVLVADAVNL-PYRSDFGDAAI 184 (394)
Q Consensus 121 ~~g~~VLDvGCG~G~~l~----~~~~~~v~gvD~S~~~l~~a~~~-----------~i~~~~~D~~~l-p~~~~~fD~Vi 184 (394)
+++.+|||||||+|..+. ..+..+++++|+++.+++.|+++ +++++.+|+.+. +...++||+|+
T Consensus 77 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii 156 (283)
T 2i7c_A 77 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII 156 (283)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred CCCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCceEEE
Confidence 456799999999999753 34567999999999999999875 357899998763 22367899999
Q ss_pred ehhhhhhcCChhHH--HHHHHHHHhccccCcEEEEEEc
Q 016157 185 SIAVLHHLSTESRR--KKAIEELVRVVKKGSLVLITVW 220 (394)
Q Consensus 185 ~~~vl~hl~~~~~~--~~~L~ei~r~LkpGG~lli~~~ 220 (394)
+....++.+. ... ..+++++.++|||||++++...
T Consensus 157 ~d~~~~~~~~-~~l~~~~~l~~~~~~L~pgG~lv~~~~ 193 (283)
T 2i7c_A 157 VDSSDPIGPA-ETLFNQNFYEKIYNALKPNGYCVAQCE 193 (283)
T ss_dssp EECCCTTTGG-GGGSSHHHHHHHHHHEEEEEEEEEECC
T ss_pred EcCCCCCCcc-hhhhHHHHHHHHHHhcCCCcEEEEECC
Confidence 9654332221 112 6899999999999999998854
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=98.95 E-value=2.7e-09 Score=95.82 Aligned_cols=92 Identities=12% Similarity=0.137 Sum_probs=72.2
Q ss_pred CCCCCEEEEEcCccCccccc---CCCcEEEEEeCCHHHHHHHHHc------CCeEEEeecCCCCCCCCCccEEEehhhhh
Q 016157 120 LPSGSLVLDAGCGNGKYLGL---NPDCFFVGCDISPSLIKICVDR------GHEVLVADAVNLPYRSDFGDAAISIAVLH 190 (394)
Q Consensus 120 l~~g~~VLDvGCG~G~~l~~---~~~~~v~gvD~S~~~l~~a~~~------~i~~~~~D~~~lp~~~~~fD~Vi~~~vl~ 190 (394)
..++.+|||+|||+|.++.. .....++|+|+|+.+++.|+++ +++++++|+.+++ ++||+|++...++
T Consensus 47 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~---~~~D~v~~~~p~~ 123 (207)
T 1wy7_A 47 DIEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSEFN---SRVDIVIMNPPFG 123 (207)
T ss_dssp SSTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGGCC---CCCSEEEECCCCS
T ss_pred CCCcCEEEEeeCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCCCEEEEECchHHcC---CCCCEEEEcCCCc
Confidence 44678999999999997532 2234899999999999999987 4789999999875 4899999998877
Q ss_pred hcCChhHHHHHHHHHHhccccCcEEEE
Q 016157 191 HLSTESRRKKAIEELVRVVKKGSLVLI 217 (394)
Q Consensus 191 hl~~~~~~~~~L~ei~r~LkpGG~lli 217 (394)
+..... ...+++++.++| ||.+++
T Consensus 124 ~~~~~~-~~~~l~~~~~~l--~~~~~~ 147 (207)
T 1wy7_A 124 SQRKHA-DRPFLLKAFEIS--DVVYSI 147 (207)
T ss_dssp SSSTTT-THHHHHHHHHHC--SEEEEE
T ss_pred cccCCc-hHHHHHHHHHhc--CcEEEE
Confidence 765332 467899999998 554433
|
| >2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=6.9e-10 Score=107.86 Aligned_cols=100 Identities=15% Similarity=0.154 Sum_probs=75.2
Q ss_pred CCCCEEEEEcCccCcccc----cCCCcEEEEEeCCHHHHHHHHHc-----------CCeEEEeecCCC-CCCCCCccEEE
Q 016157 121 PSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR-----------GHEVLVADAVNL-PYRSDFGDAAI 184 (394)
Q Consensus 121 ~~g~~VLDvGCG~G~~l~----~~~~~~v~gvD~S~~~l~~a~~~-----------~i~~~~~D~~~l-p~~~~~fD~Vi 184 (394)
+.+.+|||||||+|..+. ..+..+++++|+++.+++.|+++ +++++.+|+.+. +..+++||+|+
T Consensus 115 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDvIi 194 (321)
T 2pt6_A 115 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII 194 (321)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred CCCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceEEE
Confidence 455799999999999743 23567999999999999999875 367899998763 33357899999
Q ss_pred ehhhhhhcCChhHH--HHHHHHHHhccccCcEEEEEEcC
Q 016157 185 SIAVLHHLSTESRR--KKAIEELVRVVKKGSLVLITVWA 221 (394)
Q Consensus 185 ~~~vl~hl~~~~~~--~~~L~ei~r~LkpGG~lli~~~~ 221 (394)
+.... ++...... ..+++++.++|||||++++...+
T Consensus 195 ~d~~~-p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~ 232 (321)
T 2pt6_A 195 VDSSD-PIGPAETLFNQNFYEKIYNALKPNGYCVAQCES 232 (321)
T ss_dssp EECCC-SSSGGGGGSSHHHHHHHHHHEEEEEEEEEEECC
T ss_pred ECCcC-CCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCC
Confidence 86531 11111111 68999999999999999997643
|
| >3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=8e-10 Score=112.39 Aligned_cols=110 Identities=13% Similarity=0.164 Sum_probs=82.1
Q ss_pred HcCCCCCCEEEEEcCccCcccc----cC-CCcEEEEEeCCHHHHHHHHHc----C--CeEEEeecCCCC-CCCCCccEEE
Q 016157 117 LNSLPSGSLVLDAGCGNGKYLG----LN-PDCFFVGCDISPSLIKICVDR----G--HEVLVADAVNLP-YRSDFGDAAI 184 (394)
Q Consensus 117 l~~l~~g~~VLDvGCG~G~~l~----~~-~~~~v~gvD~S~~~l~~a~~~----~--i~~~~~D~~~lp-~~~~~fD~Vi 184 (394)
+..+.+|.+|||+|||+|..+. .. ....|+|+|+|+.+++.++++ + +.++.+|+.+++ +..++||+|+
T Consensus 96 ~L~~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~v~~~~~Da~~l~~~~~~~FD~Il 175 (464)
T 3m6w_A 96 LLDPKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAPLAVTQAPPRALAEAFGTYFHRVL 175 (464)
T ss_dssp HHCCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCCCEEECSCHHHHHHHHCSCEEEEE
T ss_pred hcCcCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCeEEEEECCHHHhhhhccccCCEEE
Confidence 3356789999999999998632 23 346999999999999999876 3 678888888765 3467899999
Q ss_pred e------hhhhhhcCChh-------------HHHHHHHHHHhccccCcEEEEEEcCccchh
Q 016157 185 S------IAVLHHLSTES-------------RRKKAIEELVRVVKKGSLVLITVWAVEQED 226 (394)
Q Consensus 185 ~------~~vl~hl~~~~-------------~~~~~L~ei~r~LkpGG~lli~~~~~~~~~ 226 (394)
+ ..++.+-++.. ...++|.++.++|||||+|++++.+...++
T Consensus 176 ~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTCs~~~eE 236 (464)
T 3m6w_A 176 LDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCTFAPEE 236 (464)
T ss_dssp EECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCCGGG
T ss_pred ECCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeccCchhc
Confidence 5 23343333210 127899999999999999999887665443
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=1.2e-09 Score=104.15 Aligned_cols=94 Identities=20% Similarity=0.264 Sum_probs=72.1
Q ss_pred CCCEEEEEcCccCccc----ccCCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeecCCCCCCCCCc---cEEEeh
Q 016157 122 SGSLVLDAGCGNGKYL----GLNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFG---DAAISI 186 (394)
Q Consensus 122 ~g~~VLDvGCG~G~~l----~~~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~lp~~~~~f---D~Vi~~ 186 (394)
++.+|||+|||+|.++ .. ++..|+|+|+|+.+++.|+++ .++++++|+.+. +. ++| |+|+++
T Consensus 123 ~~~~vLDlG~GsG~~~~~la~~-~~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~~-~~-~~f~~~D~Ivsn 199 (284)
T 1nv8_A 123 GIKTVADIGTGSGAIGVSVAKF-SDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEP-FK-EKFASIEMILSN 199 (284)
T ss_dssp TCCEEEEESCTTSHHHHHHHHH-SSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGG-GG-GGTTTCCEEEEC
T ss_pred CCCEEEEEeCchhHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcchhh-cc-cccCCCCEEEEc
Confidence 5679999999999974 23 788999999999999999876 278999999873 22 578 999997
Q ss_pred h------------hhhhcCCh-----hHHHHHHHHHH-hccccCcEEEEEE
Q 016157 187 A------------VLHHLSTE-----SRRKKAIEELV-RVVKKGSLVLITV 219 (394)
Q Consensus 187 ~------------vl~hl~~~-----~~~~~~L~ei~-r~LkpGG~lli~~ 219 (394)
- +. |-+.. .....+++++. +.|+|||.+++..
T Consensus 200 PPyi~~~~~l~~~v~-~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~e~ 249 (284)
T 1nv8_A 200 PPYVKSSAHLPKDVL-FEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEI 249 (284)
T ss_dssp CCCBCGGGSCTTSCC-CSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEEC
T ss_pred CCCCCcccccChhhc-cCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEEEE
Confidence 1 21 21110 00137899999 9999999999864
|
| >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=98.93 E-value=6.9e-10 Score=107.54 Aligned_cols=98 Identities=17% Similarity=0.171 Sum_probs=71.5
Q ss_pred CCCCEEEEEcCccCcccc----cCCCcEEEEEeCCHHHHHHHHHc-----------CCeEEEeecCC-CCCCCCCccEEE
Q 016157 121 PSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR-----------GHEVLVADAVN-LPYRSDFGDAAI 184 (394)
Q Consensus 121 ~~g~~VLDvGCG~G~~l~----~~~~~~v~gvD~S~~~l~~a~~~-----------~i~~~~~D~~~-lp~~~~~fD~Vi 184 (394)
+.+.+|||||||+|..+. ..+...|+++|+++.+++.|+++ +++++.+|+.. ++..+++||+|+
T Consensus 107 ~~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii 186 (314)
T 2b2c_A 107 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVII 186 (314)
T ss_dssp SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEE
T ss_pred CCCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCceEEE
Confidence 445799999999998643 34567999999999999999875 25788888876 333467899999
Q ss_pred ehhhhhhcCChhHH--HHHHHHHHhccccCcEEEEEE
Q 016157 185 SIAVLHHLSTESRR--KKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 185 ~~~vl~hl~~~~~~--~~~L~ei~r~LkpGG~lli~~ 219 (394)
+.... ++...... ..+++++.++|||||++++..
T Consensus 187 ~d~~~-~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~~ 222 (314)
T 2b2c_A 187 TDSSD-PVGPAESLFGQSYYELLRDALKEDGILSSQG 222 (314)
T ss_dssp ECCC--------------HHHHHHHHEEEEEEEEEEC
T ss_pred EcCCC-CCCcchhhhHHHHHHHHHhhcCCCeEEEEEC
Confidence 86543 33221111 689999999999999999975
|
| >2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=98.92 E-value=1.5e-09 Score=106.14 Aligned_cols=101 Identities=22% Similarity=0.217 Sum_probs=79.6
Q ss_pred CCCCCEEEEEcCccCccccc----CC-----CcEEEEEeCCHHHHHHHHHc------CCeEEEeecCCCCCCCCCccEEE
Q 016157 120 LPSGSLVLDAGCGNGKYLGL----NP-----DCFFVGCDISPSLIKICVDR------GHEVLVADAVNLPYRSDFGDAAI 184 (394)
Q Consensus 120 l~~g~~VLDvGCG~G~~l~~----~~-----~~~v~gvD~S~~~l~~a~~~------~i~~~~~D~~~lp~~~~~fD~Vi 184 (394)
..++.+|||+|||+|.++.. .+ ...++|+|+++.+++.|+.+ .+.++++|..... ..+.||+|+
T Consensus 128 ~~~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~~~~i~~~D~l~~~-~~~~fD~Ii 206 (344)
T 2f8l_A 128 KKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDGLANL-LVDPVDVVI 206 (344)
T ss_dssp TCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCTTSCC-CCCCEEEEE
T ss_pred CCCCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCCCceEEECCCCCcc-ccCCccEEE
Confidence 34567999999999998531 22 27899999999999999876 4788999987743 457899999
Q ss_pred ehhhhhhcCChhH---------------HHHHHHHHHhccccCcEEEEEEcC
Q 016157 185 SIAVLHHLSTESR---------------RKKAIEELVRVVKKGSLVLITVWA 221 (394)
Q Consensus 185 ~~~vl~hl~~~~~---------------~~~~L~ei~r~LkpGG~lli~~~~ 221 (394)
++-.+++++..+. ...+++.+.+.|||||++++.++.
T Consensus 207 ~NPPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~p~ 258 (344)
T 2f8l_A 207 SDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPD 258 (344)
T ss_dssp EECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEG
T ss_pred ECCCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEECc
Confidence 9988777654321 126899999999999999998853
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=98.92 E-value=1e-09 Score=104.32 Aligned_cols=100 Identities=15% Similarity=0.082 Sum_probs=75.3
Q ss_pred CCCCEEEEEcCccCcccc----cCCCcEEEEEeCCHHHHHHHHHc-----------CCeEEEeecCC-CCCCCCCccEEE
Q 016157 121 PSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR-----------GHEVLVADAVN-LPYRSDFGDAAI 184 (394)
Q Consensus 121 ~~g~~VLDvGCG~G~~l~----~~~~~~v~gvD~S~~~l~~a~~~-----------~i~~~~~D~~~-lp~~~~~fD~Vi 184 (394)
+.+.+|||||||+|..+. ..+..+|+++|+++.+++.|+++ +++++.+|+.. ++..+++||+|+
T Consensus 74 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~Ii 153 (275)
T 1iy9_A 74 PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIM 153 (275)
T ss_dssp SSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEE
T ss_pred CCCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEEE
Confidence 345799999999998753 22456999999999999999874 46889999876 333467899999
Q ss_pred ehhhhhhcCChh-HHHHHHHHHHhccccCcEEEEEEc
Q 016157 185 SIAVLHHLSTES-RRKKAIEELVRVVKKGSLVLITVW 220 (394)
Q Consensus 185 ~~~vl~hl~~~~-~~~~~L~ei~r~LkpGG~lli~~~ 220 (394)
+....++.+... ....+++++.++|||||++++...
T Consensus 154 ~d~~~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~~~ 190 (275)
T 1iy9_A 154 VDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTD 190 (275)
T ss_dssp ESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECC
T ss_pred ECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcC
Confidence 965432221100 025799999999999999999854
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=1.1e-09 Score=104.25 Aligned_cols=97 Identities=12% Similarity=0.118 Sum_probs=72.4
Q ss_pred CCCCEEEEEcCccCcccc---cCCCcEEEEEeCCHHHHHHHHHc-----------------CCeEEEeecCCC-CCCCCC
Q 016157 121 PSGSLVLDAGCGNGKYLG---LNPDCFFVGCDISPSLIKICVDR-----------------GHEVLVADAVNL-PYRSDF 179 (394)
Q Consensus 121 ~~g~~VLDvGCG~G~~l~---~~~~~~v~gvD~S~~~l~~a~~~-----------------~i~~~~~D~~~l-p~~~~~ 179 (394)
+.+.+|||||||+|..+. ..+...++++|+++.+++.|+++ +++++.+|+.+. +. +++
T Consensus 74 ~~~~~VLdiG~G~G~~~~~l~~~~~~~v~~vDid~~~i~~ar~~~~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~-~~~ 152 (281)
T 1mjf_A 74 PKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN-NRG 152 (281)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHH-CCC
T ss_pred CCCCeEEEEcCCcCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHhhccccccccccCCCCcEEEEECchHHHhcc-cCC
Confidence 456799999999998643 13556999999999999999864 357888887653 23 578
Q ss_pred ccEEEehhhhhhcCChhH--HHHHHHHHHhccccCcEEEEEE
Q 016157 180 GDAAISIAVLHHLSTESR--RKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 180 fD~Vi~~~vl~hl~~~~~--~~~~L~ei~r~LkpGG~lli~~ 219 (394)
||+|++....+ +..... ...+++++.++|+|||++++..
T Consensus 153 fD~Ii~d~~~~-~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~ 193 (281)
T 1mjf_A 153 FDVIIADSTDP-VGPAKVLFSEEFYRYVYDALNNPGIYVTQA 193 (281)
T ss_dssp EEEEEEECCCC-C-----TTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred eeEEEECCCCC-CCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 99999865532 211111 2678999999999999999975
|
| >1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=9.1e-10 Score=109.36 Aligned_cols=106 Identities=15% Similarity=0.114 Sum_probs=80.1
Q ss_pred HHHHcCCCCCCEEEEEcCccCccccc--CCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeecCCCCC----CCCCc
Q 016157 114 ATFLNSLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPY----RSDFG 180 (394)
Q Consensus 114 ~~~l~~l~~g~~VLDvGCG~G~~l~~--~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~lp~----~~~~f 180 (394)
..++..+ ++.+|||+|||+|.++.. .....|+|+|+|+.+++.|+++ +++++++|+.++.. ..++|
T Consensus 202 ~~~~~~~-~~~~VLDlg~G~G~~~~~la~~~~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~~~~~~~~~~~f 280 (382)
T 1wxx_A 202 RLYMERF-RGERALDVFSYAGGFALHLALGFREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERF 280 (382)
T ss_dssp HHHGGGC-CEEEEEEETCTTTHHHHHHHHHEEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCE
T ss_pred HHHHHhc-CCCeEEEeeeccCHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEECCHHHHHHHHHhcCCCe
Confidence 3445556 788999999999997432 1256899999999999999886 37899999877532 15789
Q ss_pred cEEEehhh---------hhhcCChhHHHHHHHHHHhccccCcEEEEEEcCcc
Q 016157 181 DAAISIAV---------LHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVE 223 (394)
Q Consensus 181 D~Vi~~~v---------l~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~~ 223 (394)
|+|++... ..+.. ....++.++.++|+|||.++++.....
T Consensus 281 D~Ii~dpP~~~~~~~~~~~~~~---~~~~~l~~~~~~LkpgG~l~~~~~~~~ 329 (382)
T 1wxx_A 281 DLVVLDPPAFAKGKKDVERAYR---AYKEVNLRAIKLLKEGGILATASCSHH 329 (382)
T ss_dssp EEEEECCCCSCCSTTSHHHHHH---HHHHHHHHHHHTEEEEEEEEEEECCTT
T ss_pred eEEEECCCCCCCChhHHHHHHH---HHHHHHHHHHHhcCCCCEEEEEECCCC
Confidence 99998431 12221 257789999999999999999986543
|
| >2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 | Back alignment and structure |
|---|
Probab=98.87 E-value=1.4e-09 Score=108.35 Aligned_cols=100 Identities=17% Similarity=0.123 Sum_probs=77.0
Q ss_pred CCCCEEEEEcCccCccccc---CCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeecCCCCC----CCCCccEEEe
Q 016157 121 PSGSLVLDAGCGNGKYLGL---NPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPY----RSDFGDAAIS 185 (394)
Q Consensus 121 ~~g~~VLDvGCG~G~~l~~---~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~lp~----~~~~fD~Vi~ 185 (394)
.++.+|||+|||+|.++.. .....|+|+|+|+.+++.|+++ +++++.+|+.++.. ..++||+|++
T Consensus 216 ~~~~~VLDl~~G~G~~~~~la~~g~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~~~~~fD~Vi~ 295 (396)
T 2as0_A 216 QPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVL 295 (396)
T ss_dssp CTTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred hCCCeEEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHHHHHhhCCCCCEEEE
Confidence 3788999999999997432 2234899999999999999876 46899999877532 2568999999
Q ss_pred hh---------hhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCcc
Q 016157 186 IA---------VLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVE 223 (394)
Q Consensus 186 ~~---------vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~~ 223 (394)
.. +.++... ...++.++.++|+|||.++++.....
T Consensus 296 dpP~~~~~~~~~~~~~~~---~~~~l~~~~~~LkpgG~lv~~~~~~~ 339 (396)
T 2as0_A 296 DPPAFVQHEKDLKAGLRA---YFNVNFAGLNLVKDGGILVTCSCSQH 339 (396)
T ss_dssp CCCCSCSSGGGHHHHHHH---HHHHHHHHHTTEEEEEEEEEEECCTT
T ss_pred CCCCCCCCHHHHHHHHHH---HHHHHHHHHHhcCCCcEEEEEECCCC
Confidence 42 2222222 67899999999999999999886543
|
| >2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A | Back alignment and structure |
|---|
Probab=98.87 E-value=2.1e-09 Score=101.52 Aligned_cols=87 Identities=8% Similarity=-0.091 Sum_probs=70.8
Q ss_pred CCCCEEEEEcCccCcccc---cCCCcEEEEEeCCHHHHHHHHHc-----------CCeEEEeecCCCCCCCCCccEEEeh
Q 016157 121 PSGSLVLDAGCGNGKYLG---LNPDCFFVGCDISPSLIKICVDR-----------GHEVLVADAVNLPYRSDFGDAAISI 186 (394)
Q Consensus 121 ~~g~~VLDvGCG~G~~l~---~~~~~~v~gvD~S~~~l~~a~~~-----------~i~~~~~D~~~lp~~~~~fD~Vi~~ 186 (394)
+.+.+|||||||+|..+. ..+ .+++++|+++.+++.|+++ +++++.+|+.... ++||+|++.
T Consensus 71 ~~~~~VL~iG~G~G~~~~~ll~~~-~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~---~~fD~Ii~d 146 (262)
T 2cmg_A 71 KELKEVLIVDGFDLELAHQLFKYD-THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDI---KKYDLIFCL 146 (262)
T ss_dssp SCCCEEEEESSCCHHHHHHHTTSS-CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCC---CCEEEEEES
T ss_pred CCCCEEEEEeCCcCHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHH---hhCCEEEEC
Confidence 345799999999998643 134 8999999999999998764 3678888988764 789999986
Q ss_pred hhhhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 016157 187 AVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 187 ~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~ 219 (394)
..+ +..+++++.++|||||++++..
T Consensus 147 -----~~d---p~~~~~~~~~~L~pgG~lv~~~ 171 (262)
T 2cmg_A 147 -----QEP---DIHRIDGLKRMLKEDGVFISVA 171 (262)
T ss_dssp -----SCC---CHHHHHHHHTTEEEEEEEEEEE
T ss_pred -----CCC---hHHHHHHHHHhcCCCcEEEEEc
Confidence 334 3459999999999999999975
|
| >4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.87 E-value=4.1e-09 Score=105.17 Aligned_cols=104 Identities=10% Similarity=0.059 Sum_probs=74.9
Q ss_pred CCCCCEEEEEcCccCccccc--CCCcEEEEEeCCHHHHHHHHHc----C--CeEEEeecCCCC-CCCCCccEEEehhhhh
Q 016157 120 LPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR----G--HEVLVADAVNLP-YRSDFGDAAISIAVLH 190 (394)
Q Consensus 120 l~~g~~VLDvGCG~G~~l~~--~~~~~v~gvD~S~~~l~~a~~~----~--i~~~~~D~~~lp-~~~~~fD~Vi~~~vl~ 190 (394)
.++|.+|||+|||+|.++.. ..+..|+|+|+|+.+++.|+++ + ..+.++|+.++. ...+.||+|++.....
T Consensus 212 ~~~g~~VLDlg~GtG~~sl~~a~~ga~V~avDis~~al~~a~~n~~~ng~~~~~~~~D~~~~l~~~~~~fD~Ii~dpP~f 291 (393)
T 4dmg_A 212 VRPGERVLDVYSYVGGFALRAARKGAYALAVDKDLEALGVLDQAALRLGLRVDIRHGEALPTLRGLEGPFHHVLLDPPTL 291 (393)
T ss_dssp CCTTCEEEEESCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCHHHHHHTCCCCEEEEEECCCCC
T ss_pred hcCCCeEEEcccchhHHHHHHHHcCCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEccHHHHHHHhcCCCCEEEECCCcC
Confidence 34689999999999997532 2356699999999999999886 3 357888887642 2134499999853211
Q ss_pred hcCC------hhHHHHHHHHHHhccccCcEEEEEEcCcc
Q 016157 191 HLST------ESRRKKAIEELVRVVKKGSLVLITVWAVE 223 (394)
Q Consensus 191 hl~~------~~~~~~~L~ei~r~LkpGG~lli~~~~~~ 223 (394)
.-.. ......++..+.++|||||.+++.+.+..
T Consensus 292 ~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s~~ 330 (393)
T 4dmg_A 292 VKRPEELPAMKRHLVDLVREALRLLAEEGFLWLSSCSYH 330 (393)
T ss_dssp CSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCC
Confidence 0000 01146889999999999999998876654
|
| >3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=3.9e-09 Score=104.50 Aligned_cols=100 Identities=21% Similarity=0.095 Sum_probs=75.3
Q ss_pred CCCCCEEEEEcCccCcccc----cCCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeecCCCCCCCCCccEEEehh
Q 016157 120 LPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISIA 187 (394)
Q Consensus 120 l~~g~~VLDvGCG~G~~l~----~~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~lp~~~~~fD~Vi~~~ 187 (394)
..++.+|||+|||+|.++. ..+...++|+|+|+.|++.|+++ ++++.++|+.++++++++||+|+++-
T Consensus 215 ~~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~~~~~~~~fD~Ii~np 294 (373)
T 3tm4_A 215 ELDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQLSQYVDSVDFAISNL 294 (373)
T ss_dssp TCCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGGGGGTCSCEEEEEEEC
T ss_pred cCCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhhCCcccCCcCEEEECC
Confidence 6788899999999999753 23334899999999999999986 46999999999998788999999965
Q ss_pred hhhhcC----Ch-hHHHHHHHHHHhccccCcEEEEEEcC
Q 016157 188 VLHHLS----TE-SRRKKAIEELVRVVKKGSLVLITVWA 221 (394)
Q Consensus 188 vl~hl~----~~-~~~~~~L~ei~r~LkpGG~lli~~~~ 221 (394)
...... .. .....+++++.++| ||.+++.+..
T Consensus 295 Pyg~r~~~~~~~~~ly~~~~~~l~r~l--~g~~~~i~~~ 331 (373)
T 3tm4_A 295 PYGLKIGKKSMIPDLYMKFFNELAKVL--EKRGVFITTE 331 (373)
T ss_dssp CCC------CCHHHHHHHHHHHHHHHE--EEEEEEEESC
T ss_pred CCCcccCcchhHHHHHHHHHHHHHHHc--CCeEEEEECC
Confidence 432211 11 11267888999988 5666666543
|
| >3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} | Back alignment and structure |
|---|
Probab=98.85 E-value=3e-09 Score=108.02 Aligned_cols=110 Identities=18% Similarity=0.209 Sum_probs=80.7
Q ss_pred HcCCCCCCEEEEEcCccCcccc----c-CCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeecCCCC-CCCCCccEE
Q 016157 117 LNSLPSGSLVLDAGCGNGKYLG----L-NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLP-YRSDFGDAA 183 (394)
Q Consensus 117 l~~l~~g~~VLDvGCG~G~~l~----~-~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~lp-~~~~~fD~V 183 (394)
+..+.+|.+|||+|||+|..+. . .....|+|+|+++.+++.++++ ++.++.+|+..++ ..+++||+|
T Consensus 100 ~L~~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~nv~v~~~Da~~l~~~~~~~FD~I 179 (456)
T 3m4x_A 100 AAAAKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVSNAIVTNHAPAELVPHFSGFFDRI 179 (456)
T ss_dssp HHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCSSEEEECCCHHHHHHHHTTCEEEE
T ss_pred HcCCCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhhhccccCCEE
Confidence 3356789999999999997532 2 3457999999999999998876 4678888988765 246789999
Q ss_pred Eehh------hhhhcCC-------h------hHHHHHHHHHHhccccCcEEEEEEcCccchh
Q 016157 184 ISIA------VLHHLST-------E------SRRKKAIEELVRVVKKGSLVLITVWAVEQED 226 (394)
Q Consensus 184 i~~~------vl~hl~~-------~------~~~~~~L~ei~r~LkpGG~lli~~~~~~~~~ 226 (394)
++.. ++.+-++ . .....+|.++.++|||||+|+.++.+...++
T Consensus 180 l~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~eE 241 (456)
T 3m4x_A 180 VVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCTFAPEE 241 (456)
T ss_dssp EEECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESCCCGGG
T ss_pred EECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEeeccccc
Confidence 9732 2222111 0 0123789999999999999999887765443
|
| >2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* | Back alignment and structure |
|---|
Probab=98.83 E-value=5e-09 Score=102.29 Aligned_cols=96 Identities=16% Similarity=0.190 Sum_probs=77.2
Q ss_pred cCCCCCCEEEEEcCccCcccc-cCCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeecCCCCCCCCCccEEEehhh
Q 016157 118 NSLPSGSLVLDAGCGNGKYLG-LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISIAV 188 (394)
Q Consensus 118 ~~l~~g~~VLDvGCG~G~~l~-~~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~lp~~~~~fD~Vi~~~v 188 (394)
..+.++.+|||+|||+|.++. ......|+|+|+|+.+++.|+++ +++++.+|+.+.. +.||+|++...
T Consensus 191 ~~~~~~~~VLDlg~G~G~~~l~a~~~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~---~~fD~Vi~dpP 267 (336)
T 2yx1_A 191 KKVSLNDVVVDMFAGVGPFSIACKNAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVD---VKGNRVIMNLP 267 (336)
T ss_dssp HHCCTTCEEEETTCTTSHHHHHTTTSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCC---CCEEEEEECCT
T ss_pred HhcCCCCEEEEccCccCHHHHhccCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhc---CCCcEEEECCc
Confidence 345688999999999999732 33456999999999999999876 4789999998875 78999998532
Q ss_pred hhhcCChhHHHHHHHHHHhccccCcEEEEEEcCcc
Q 016157 189 LHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVE 223 (394)
Q Consensus 189 l~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~~ 223 (394)
-. ...++..+.++|+|||.+++..+...
T Consensus 268 ~~-------~~~~l~~~~~~L~~gG~l~~~~~~~~ 295 (336)
T 2yx1_A 268 KF-------AHKFIDKALDIVEEGGVIHYYTIGKD 295 (336)
T ss_dssp TT-------GGGGHHHHHHHEEEEEEEEEEEEESS
T ss_pred Hh-------HHHHHHHHHHHcCCCCEEEEEEeecC
Confidence 11 24788999999999999999887654
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=98.81 E-value=2.4e-09 Score=114.35 Aligned_cols=105 Identities=13% Similarity=0.122 Sum_probs=79.0
Q ss_pred HHHHcCCCCCCEEEEEcCccCccccc--CCC-cEEEEEeCCHHHHHHHHHc---------CCeEEEeecCC-CCCCCCCc
Q 016157 114 ATFLNSLPSGSLVLDAGCGNGKYLGL--NPD-CFFVGCDISPSLIKICVDR---------GHEVLVADAVN-LPYRSDFG 180 (394)
Q Consensus 114 ~~~l~~l~~g~~VLDvGCG~G~~l~~--~~~-~~v~gvD~S~~~l~~a~~~---------~i~~~~~D~~~-lp~~~~~f 180 (394)
..++..+.+|.+|||+|||+|.++.. ..+ ..|+++|+|+.+++.|+++ +++++++|+.+ ++...++|
T Consensus 531 r~~l~~~~~g~~VLDlg~GtG~~sl~aa~~ga~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~~~~~f 610 (703)
T 3v97_A 531 RRMLGQMSKGKDFLNLFSYTGSATVHAGLGGARSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLREANEQF 610 (703)
T ss_dssp HHHHHHHCTTCEEEEESCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHHHHCCCCE
T ss_pred HHHHHHhcCCCcEEEeeechhHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHhcCCCc
Confidence 33444445788999999999997432 233 3799999999999999886 26789999987 34446789
Q ss_pred cEEEehhh-----------hhhcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 016157 181 DAAISIAV-----------LHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 221 (394)
Q Consensus 181 D~Vi~~~v-----------l~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~ 221 (394)
|+|++..- +++.. ....++..+.++|+|||+|+++.-.
T Consensus 611 D~Ii~DPP~f~~~~~~~~~~~~~~---~~~~ll~~a~~~LkpgG~L~~s~~~ 659 (703)
T 3v97_A 611 DLIFIDPPTFSNSKRMEDAFDVQR---DHLALMKDLKRLLRAGGTIMFSNNK 659 (703)
T ss_dssp EEEEECCCSBC-------CCBHHH---HHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred cEEEECCccccCCccchhHHHHHH---HHHHHHHHHHHhcCCCcEEEEEECC
Confidence 99998532 22222 2678899999999999999988744
|
| >2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=2.2e-09 Score=106.81 Aligned_cols=103 Identities=14% Similarity=0.145 Sum_probs=75.4
Q ss_pred CCCCEEEEEcCccCccccc--CCCc-EEEEEeCCHHHHHHHHHc---------CCeEEEeecCCC-CC---CCCCccEEE
Q 016157 121 PSGSLVLDAGCGNGKYLGL--NPDC-FFVGCDISPSLIKICVDR---------GHEVLVADAVNL-PY---RSDFGDAAI 184 (394)
Q Consensus 121 ~~g~~VLDvGCG~G~~l~~--~~~~-~v~gvD~S~~~l~~a~~~---------~i~~~~~D~~~l-p~---~~~~fD~Vi 184 (394)
.++.+|||+|||+|.++.. ..+. .|+|+|+|+.+++.|+++ +++++++|+.+. +. ...+||+|+
T Consensus 211 ~~~~~VLDl~cGtG~~sl~la~~ga~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~~~~~fD~Ii 290 (385)
T 2b78_A 211 AAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDIII 290 (385)
T ss_dssp TBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred cCCCeEEEEeeccCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHHhCCCccEEE
Confidence 5788999999999997432 2244 899999999999999875 357899998763 21 245899999
Q ss_pred ehhhh-----hhcCCh-hHHHHHHHHHHhccccCcEEEEEEcCcc
Q 016157 185 SIAVL-----HHLSTE-SRRKKAIEELVRVVKKGSLVLITVWAVE 223 (394)
Q Consensus 185 ~~~vl-----~hl~~~-~~~~~~L~ei~r~LkpGG~lli~~~~~~ 223 (394)
+.... .++... .....++..+.++|+|||.++++.....
T Consensus 291 ~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~~~~ 335 (385)
T 2b78_A 291 IDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAAN 335 (385)
T ss_dssp ECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCTT
T ss_pred ECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCc
Confidence 84322 223221 1245678888999999999999886543
|
| >3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=4.6e-09 Score=99.99 Aligned_cols=100 Identities=16% Similarity=0.183 Sum_probs=78.3
Q ss_pred HHcCCCCCCEEEEEcCccCcccc---cCCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeecCCCCCCCCCccEEE
Q 016157 116 FLNSLPSGSLVLDAGCGNGKYLG---LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAI 184 (394)
Q Consensus 116 ~l~~l~~g~~VLDvGCG~G~~l~---~~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~lp~~~~~fD~Vi 184 (394)
+...+.+|.+|||+|||+|.++- ......|+++|+++.+++.++++ .++++.+|+.+++. .+.||.|+
T Consensus 119 i~~~~~~g~~VlD~~aG~G~~~i~~a~~g~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~~-~~~~D~Vi 197 (278)
T 3k6r_A 119 MAKVAKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG-ENIADRIL 197 (278)
T ss_dssp HHHHCCTTCEEEETTCTTTTTTHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC-CSCEEEEE
T ss_pred HHHhcCCCCEEEEecCcCcHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhcc-ccCCCEEE
Confidence 34456789999999999999853 23346899999999999999876 36889999998764 57899998
Q ss_pred ehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCcc
Q 016157 185 SIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVE 223 (394)
Q Consensus 185 ~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~~ 223 (394)
+... +. ...+|..+.++|||||.+.+..+..+
T Consensus 198 ~~~p----~~---~~~~l~~a~~~lk~gG~ih~~~~~~e 229 (278)
T 3k6r_A 198 MGYV----VR---THEFIPKALSIAKDGAIIHYHNTVPE 229 (278)
T ss_dssp ECCC----SS---GGGGHHHHHHHEEEEEEEEEEEEEEG
T ss_pred ECCC----Cc---HHHHHHHHHHHcCCCCEEEEEeeecc
Confidence 7632 22 34678888999999999988766543
|
| >3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=98.79 E-value=4.4e-09 Score=104.90 Aligned_cols=102 Identities=16% Similarity=0.077 Sum_probs=75.5
Q ss_pred CCCCEEEEEcCccCccccc--CC-CcEEEEEeCCHHHHHHHHHc----C-----CeEEEeecCCCCC----CCCCccEEE
Q 016157 121 PSGSLVLDAGCGNGKYLGL--NP-DCFFVGCDISPSLIKICVDR----G-----HEVLVADAVNLPY----RSDFGDAAI 184 (394)
Q Consensus 121 ~~g~~VLDvGCG~G~~l~~--~~-~~~v~gvD~S~~~l~~a~~~----~-----i~~~~~D~~~lp~----~~~~fD~Vi 184 (394)
.++.+|||+|||+|.++.. .. ...|+|+|+|+.+++.|+++ + ++++.+|+.++.. ....||+|+
T Consensus 219 ~~~~~VLDl~cG~G~~sl~la~~g~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~~~~fD~Ii 298 (396)
T 3c0k_A 219 VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV 298 (396)
T ss_dssp CTTCEEEEESCTTCSHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred hCCCeEEEeeccCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHhcCCCCCEEE
Confidence 5788999999999997432 22 35899999999999999875 3 4789999877531 146899999
Q ss_pred ehhhhhh-----c-CChhHHHHHHHHHHhccccCcEEEEEEcCc
Q 016157 185 SIAVLHH-----L-STESRRKKAIEELVRVVKKGSLVLITVWAV 222 (394)
Q Consensus 185 ~~~vl~h-----l-~~~~~~~~~L~ei~r~LkpGG~lli~~~~~ 222 (394)
+...... + ........++.++.++|+|||.++++....
T Consensus 299 ~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 342 (396)
T 3c0k_A 299 MDPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTFSCSG 342 (396)
T ss_dssp ECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred ECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 9632110 0 000126788999999999999999987654
|
| >1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A | Back alignment and structure |
|---|
Probab=98.76 E-value=2.1e-09 Score=100.26 Aligned_cols=66 Identities=17% Similarity=0.255 Sum_probs=52.4
Q ss_pred CCCCCEEEEEcCccCccccc--CCCcEEEEEeCCHHHHHHHHHc-----CCeEEEeecCCCCCCC-CCccEEEeh
Q 016157 120 LPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR-----GHEVLVADAVNLPYRS-DFGDAAISI 186 (394)
Q Consensus 120 l~~g~~VLDvGCG~G~~l~~--~~~~~v~gvD~S~~~l~~a~~~-----~i~~~~~D~~~lp~~~-~~fD~Vi~~ 186 (394)
+.++.+|||||||+|.++.. ..+..|+|+|+++.|++.++++ +++++++|+.++++++ ..| .|+++
T Consensus 28 ~~~~~~VLDiG~G~G~lt~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~~~~~~~~-~vv~n 101 (244)
T 1qam_A 28 LNEHDNIFEIGSGKGHFTLELVQRCNFVTAIEIDHKLCKTTENKLVDHDNFQVLNKDILQFKFPKNQSY-KIFGN 101 (244)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHSSEEEEECSCHHHHHHHHHHTTTCCSEEEECCCGGGCCCCSSCCC-EEEEE
T ss_pred CCCCCEEEEEeCCchHHHHHHHHcCCeEEEEECCHHHHHHHHHhhccCCCeEEEEChHHhCCcccCCCe-EEEEe
Confidence 45778999999999997542 2347999999999999999886 5899999999998764 455 34443
|
| >1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=98.75 E-value=8.3e-11 Score=109.60 Aligned_cols=97 Identities=9% Similarity=0.135 Sum_probs=72.9
Q ss_pred CCCCCEEEEEcCccCccccc--CCCcEEEEEeCCHHHHHHHHHc-----CCeEEEeecCCCCCCC-CCccEEEeh-----
Q 016157 120 LPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR-----GHEVLVADAVNLPYRS-DFGDAAISI----- 186 (394)
Q Consensus 120 l~~g~~VLDvGCG~G~~l~~--~~~~~v~gvD~S~~~l~~a~~~-----~i~~~~~D~~~lp~~~-~~fD~Vi~~----- 186 (394)
+.++.+|||||||+|.++.. ..+..++|+|+++.+++.|+++ +++++++|+.+++++. ++| .|+++
T Consensus 27 ~~~~~~VLDiG~G~G~~~~~l~~~~~~v~~id~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~~~~~~~f-~vv~n~Py~~ 105 (245)
T 1yub_A 27 LKETDTVYEIGTGKGHLTTKLAKISKQVTSIELDSHLFNLSSEKLKLNTRVTLIHQDILQFQFPNKQRY-KIVGNIPYHL 105 (245)
T ss_dssp CCSSEEEEECSCCCSSCSHHHHHHSSEEEESSSSCSSSSSSSCTTTTCSEEEECCSCCTTTTCCCSSEE-EEEEECCSSS
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHhCCeEEEEECCHHHHHHHHHHhccCCceEEEECChhhcCcccCCCc-EEEEeCCccc
Confidence 56788999999999998642 2347999999999999988775 4789999999988763 678 56554
Q ss_pred ------hhhhhcCChhHHHHHH----HHHHhccccCcEEEEEEc
Q 016157 187 ------AVLHHLSTESRRKKAI----EELVRVVKKGSLVLITVW 220 (394)
Q Consensus 187 ------~vl~hl~~~~~~~~~L----~ei~r~LkpGG~lli~~~ 220 (394)
.+++|... ...++ +.+.|+|+|||++.+.+.
T Consensus 106 ~~~~~~~~~~~~~~---~~~~lm~q~e~a~rll~~~G~l~v~~~ 146 (245)
T 1yub_A 106 STQIIKKVVFESRA---SDIYLIVEEGFYKRTLDIHRTLGLLLH 146 (245)
T ss_dssp CHHHHHHHHHHCCC---EEEEEEEESSHHHHHHCGGGSHHHHTT
T ss_pred cHHHHHHHHhCCCC---CeEEEEeeHHHHHHHhCCCCchhhhhe
Confidence 22334333 23455 779999999999887654
|
| >2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.72 E-value=2.3e-08 Score=96.06 Aligned_cols=70 Identities=23% Similarity=0.290 Sum_probs=53.3
Q ss_pred CCCCCCEEEEEcCccCccccc--CCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeecCCCCCCCCCccEEEehhhh
Q 016157 119 SLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFGDAAISIAVL 189 (394)
Q Consensus 119 ~l~~g~~VLDvGCG~G~~l~~--~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~lp~~~~~fD~Vi~~~vl 189 (394)
.+.++.+|||||||+|.++.. ..+..|+|+|+++.|++.|+++ +++++.+|+..+++. +||+|+++...
T Consensus 39 ~~~~~~~VLDiG~G~G~lt~~La~~~~~v~~vDi~~~~~~~a~~~~~~~~~~~v~~~~~D~~~~~~~--~~D~Vv~n~py 116 (299)
T 2h1r_A 39 KIKSSDIVLEIGCGTGNLTVKLLPLAKKVITIDIDSRMISEVKKRCLYEGYNNLEVYEGDAIKTVFP--KFDVCTANIPY 116 (299)
T ss_dssp CCCTTCEEEEECCTTSTTHHHHTTTSSEEEEECSCHHHHHHHHHHHHHTTCCCEEC----CCSSCCC--CCSEEEEECCG
T ss_pred CCCCcCEEEEEcCcCcHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEECchhhCCcc--cCCEEEEcCCc
Confidence 356788999999999998542 3356999999999999999875 478899999988763 79999997554
Q ss_pred h
Q 016157 190 H 190 (394)
Q Consensus 190 ~ 190 (394)
+
T Consensus 117 ~ 117 (299)
T 2h1r_A 117 K 117 (299)
T ss_dssp G
T ss_pred c
Confidence 4
|
| >2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A* | Back alignment and structure |
|---|
Probab=98.67 E-value=1.6e-08 Score=100.90 Aligned_cols=98 Identities=23% Similarity=0.347 Sum_probs=74.3
Q ss_pred CCCCEEEEEcCccCccccc-----CCCcEEEEEeCCHHHHHHHHHcCCeEEEeecCCCCCCCCCccEEEehhhhhh----
Q 016157 121 PSGSLVLDAGCGNGKYLGL-----NPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHH---- 191 (394)
Q Consensus 121 ~~g~~VLDvGCG~G~~l~~-----~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~lp~~~~~fD~Vi~~~vl~h---- 191 (394)
.++.+|||+|||+|.++.. .+...++|+|+++.+++.| .+++++++|+.+.+. .+.||+|+++--...
T Consensus 38 ~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a--~~~~~~~~D~~~~~~-~~~fD~Ii~NPPy~~~~~~ 114 (421)
T 2ih2_A 38 PRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP--PWAEGILADFLLWEP-GEAFDLILGNPPYGIVGEA 114 (421)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC--TTEEEEESCGGGCCC-SSCEEEEEECCCCCCBSCT
T ss_pred CCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC--CCCcEEeCChhhcCc-cCCCCEEEECcCccCcccc
Confidence 3467999999999998542 2567999999999999888 568999999988753 468999999522211
Q ss_pred ------cCChhH----------------HHHHHHHHHhccccCcEEEEEEcC
Q 016157 192 ------LSTESR----------------RKKAIEELVRVVKKGSLVLITVWA 221 (394)
Q Consensus 192 ------l~~~~~----------------~~~~L~ei~r~LkpGG~lli~~~~ 221 (394)
+....+ ...+++.+.++|+|||++++.++.
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~p~ 166 (421)
T 2ih2_A 115 SKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPA 166 (421)
T ss_dssp TTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred cccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEECh
Confidence 211111 126799999999999999999864
|
| >2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A* | Back alignment and structure |
|---|
Probab=98.65 E-value=4.3e-08 Score=98.77 Aligned_cols=92 Identities=21% Similarity=0.190 Sum_probs=69.2
Q ss_pred CCCCCEEEEEcCccCccccc--CCCcEEEEEeCCHHHHHHHHHc----C--CeEEEeecCCCCCCCCCccEEEehhhhhh
Q 016157 120 LPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR----G--HEVLVADAVNLPYRSDFGDAAISIAVLHH 191 (394)
Q Consensus 120 l~~g~~VLDvGCG~G~~l~~--~~~~~v~gvD~S~~~l~~a~~~----~--i~~~~~D~~~lp~~~~~fD~Vi~~~vl~h 191 (394)
+.++.+|||+|||+|.++.. ..+..|+|+|+|+.+++.|+++ + ++++.+|+.++... .||+|++.-.-..
T Consensus 288 ~~~~~~VLDlgcG~G~~sl~la~~~~~V~gvD~s~~ai~~A~~n~~~ngl~v~~~~~d~~~~~~~--~fD~Vv~dPPr~g 365 (425)
T 2jjq_A 288 LVEGEKILDMYSGVGTFGIYLAKRGFNVKGFDSNEFAIEMARRNVEINNVDAEFEVASDREVSVK--GFDTVIVDPPRAG 365 (425)
T ss_dssp HCCSSEEEEETCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCCEEEEECCTTTCCCT--TCSEEEECCCTTC
T ss_pred cCCCCEEEEeeccchHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEECChHHcCcc--CCCEEEEcCCccc
Confidence 46778999999999997532 2356999999999999999876 3 68999999987532 8999998543211
Q ss_pred cCChhHHHHHHHHHHhccccCcEEEEEE
Q 016157 192 LSTESRRKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 192 l~~~~~~~~~L~ei~r~LkpGG~lli~~ 219 (394)
+ ...+++.+. .|+|||.++++.
T Consensus 366 ~-----~~~~~~~l~-~l~p~givyvsc 387 (425)
T 2jjq_A 366 L-----HPRLVKRLN-REKPGVIVYVSC 387 (425)
T ss_dssp S-----CHHHHHHHH-HHCCSEEEEEES
T ss_pred h-----HHHHHHHHH-hcCCCcEEEEEC
Confidence 1 124555554 489999998874
|
| >2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=98.63 E-value=2.1e-08 Score=101.54 Aligned_cols=100 Identities=17% Similarity=0.285 Sum_probs=77.6
Q ss_pred CCCCCEEEEEcCccCccccc----C-------------CCcEEEEEeCCHHHHHHHHHc----C-----CeEEEeecCCC
Q 016157 120 LPSGSLVLDAGCGNGKYLGL----N-------------PDCFFVGCDISPSLIKICVDR----G-----HEVLVADAVNL 173 (394)
Q Consensus 120 l~~g~~VLDvGCG~G~~l~~----~-------------~~~~v~gvD~S~~~l~~a~~~----~-----i~~~~~D~~~l 173 (394)
..++.+|||.|||+|.++.. . +...++|+|+++.+++.|+.+ + ..+.++|....
T Consensus 169 ~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~~~~~~i~~gD~l~~ 248 (445)
T 2okc_A 169 PQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSPIVCEDSLEK 248 (445)
T ss_dssp CCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCCSEEECCTTTS
T ss_pred CCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCCcCCCCEeeCCCCCC
Confidence 45678999999999998532 0 346799999999999999865 3 46899999887
Q ss_pred CCCCCCccEEEehhhhhhcCChh--------------HHHHHHHHHHhccccCcEEEEEEc
Q 016157 174 PYRSDFGDAAISIAVLHHLSTES--------------RRKKAIEELVRVVKKGSLVLITVW 220 (394)
Q Consensus 174 p~~~~~fD~Vi~~~vl~hl~~~~--------------~~~~~L~ei~r~LkpGG~lli~~~ 220 (394)
+.. ..||+|+++-.+.+..... .-..+++.+.++|||||++.+.++
T Consensus 249 ~~~-~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~V~p 308 (445)
T 2okc_A 249 EPS-TLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLP 308 (445)
T ss_dssp CCS-SCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccc-CCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEEEEC
Confidence 653 4899999987665543211 024789999999999999999875
|
| >2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=98.58 E-value=2.2e-07 Score=89.65 Aligned_cols=109 Identities=15% Similarity=0.102 Sum_probs=75.8
Q ss_pred HcCCCCCCEEEEEcCccCcccc----c-CCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeecCCCCCCC---CCcc
Q 016157 117 LNSLPSGSLVLDAGCGNGKYLG----L-NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRS---DFGD 181 (394)
Q Consensus 117 l~~l~~g~~VLDvGCG~G~~l~----~-~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~lp~~~---~~fD 181 (394)
+..+.+|.+|||+|||+|..+. . .+...|+|+|+++.+++.++++ +++++.+|+.+++... ..||
T Consensus 97 ~l~~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~fD 176 (309)
T 2b9e_A 97 LLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVH 176 (309)
T ss_dssp HHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCGGGTTEE
T ss_pred HhCCCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCChHhcCccccccCCCC
Confidence 3356789999999999998642 2 3557999999999999998876 4789999998876432 5799
Q ss_pred EEEeh------hhhhhcCCh--------h-------HHHHHHHHHHhccccCcEEEEEEcCccchh
Q 016157 182 AAISI------AVLHHLSTE--------S-------RRKKAIEELVRVVKKGSLVLITVWAVEQED 226 (394)
Q Consensus 182 ~Vi~~------~vl~hl~~~--------~-------~~~~~L~ei~r~LkpGG~lli~~~~~~~~~ 226 (394)
.|++. +++..-++. + ...++|..+.++|+ ||+++.++.+...++
T Consensus 177 ~Vl~D~PcSg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~lvYsTCs~~~~E 241 (309)
T 2b9e_A 177 YILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPS-LQRLVYSTCSLCQEE 241 (309)
T ss_dssp EEEECCCCCC------------------CCHHHHHHHHHHHHHHHTTCTT-CCEEEEEESCCCGGG
T ss_pred EEEEcCCcCCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhccC-CCEEEEECCCCChHH
Confidence 99972 233321110 0 01356888888887 999998887665433
|
| >1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* | Back alignment and structure |
|---|
Probab=98.57 E-value=1.5e-07 Score=94.95 Aligned_cols=93 Identities=14% Similarity=0.214 Sum_probs=68.5
Q ss_pred CCCCCEEEEEcCccCccccc--CCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeecCC----CCCCCCCccEEEeh
Q 016157 120 LPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVN----LPYRSDFGDAAISI 186 (394)
Q Consensus 120 l~~g~~VLDvGCG~G~~l~~--~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~----lp~~~~~fD~Vi~~ 186 (394)
+.++.+|||+|||+|.++.. .....|+|+|+|+.+++.|+++ +++++++|+.+ +++.+++||+|++.
T Consensus 284 ~~~~~~VLDlgcG~G~~~~~la~~~~~V~gvD~s~~al~~A~~n~~~~~~~~v~f~~~d~~~~l~~~~~~~~~fD~Vv~d 363 (433)
T 1uwv_A 284 VQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLD 363 (433)
T ss_dssp CCTTCEEEEESCTTTTTHHHHHTTSSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGGGTTCCSEEEEC
T ss_pred CCCCCEEEECCCCCCHHHHHHHhhCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEECCHHHHhhhhhhhcCCCCEEEEC
Confidence 45678999999999997532 3367999999999999999876 47899999987 34566789999984
Q ss_pred hhhhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 016157 187 AVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 187 ~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~ 219 (394)
---.. ...+++.+.+ ++|++.++++.
T Consensus 364 PPr~g------~~~~~~~l~~-~~p~~ivyvsc 389 (433)
T 1uwv_A 364 PARAG------AAGVMQQIIK-LEPIRIVYVSC 389 (433)
T ss_dssp CCTTC------CHHHHHHHHH-HCCSEEEEEES
T ss_pred CCCcc------HHHHHHHHHh-cCCCeEEEEEC
Confidence 32111 1234444443 78988887764
|
| >3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A* | Back alignment and structure |
|---|
Probab=98.54 E-value=5.8e-08 Score=93.16 Aligned_cols=72 Identities=17% Similarity=0.127 Sum_probs=60.4
Q ss_pred CCCCCCEEEEEcCccCccccc--CCCcEEEEEeCCHHHHHHHHHc-----CCeEEEeecCCCCCCCCCccEEEehhhhh
Q 016157 119 SLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR-----GHEVLVADAVNLPYRSDFGDAAISIAVLH 190 (394)
Q Consensus 119 ~l~~g~~VLDvGCG~G~~l~~--~~~~~v~gvD~S~~~l~~a~~~-----~i~~~~~D~~~lp~~~~~fD~Vi~~~vl~ 190 (394)
.+.++.+|||||||+|.++.. ..+..|+|+|+++.|++.++++ +++++++|+..+++++..||+|+++...+
T Consensus 47 ~~~~~~~VLEIG~G~G~lT~~La~~~~~V~aVEid~~li~~a~~~~~~~~~v~vi~gD~l~~~~~~~~fD~Iv~NlPy~ 125 (295)
T 3gru_A 47 NLTKDDVVLEIGLGKGILTEELAKNAKKVYVIEIDKSLEPYANKLKELYNNIEIIWGDALKVDLNKLDFNKVVANLPYQ 125 (295)
T ss_dssp TCCTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCGGGHHHHHHHHHHCSSEEEEESCTTTSCGGGSCCSEEEEECCGG
T ss_pred CCCCcCEEEEECCCchHHHHHHHhcCCEEEEEECCHHHHHHHHHHhccCCCeEEEECchhhCCcccCCccEEEEeCccc
Confidence 356788999999999997542 2357999999999999999876 68999999999998888899999875443
|
| >3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=98.52 E-value=1.9e-07 Score=93.12 Aligned_cols=104 Identities=18% Similarity=0.170 Sum_probs=74.8
Q ss_pred cCCCCCCEEEEEcCccCcccc--------cCCC----------------------------------cEEEEEeCCHHHH
Q 016157 118 NSLPSGSLVLDAGCGNGKYLG--------LNPD----------------------------------CFFVGCDISPSLI 155 (394)
Q Consensus 118 ~~l~~g~~VLDvGCG~G~~l~--------~~~~----------------------------------~~v~gvD~S~~~l 155 (394)
....++..|||.+||+|.++. ..|| ..|+|+|+++.|+
T Consensus 197 ~~~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~al 276 (393)
T 3k0b_A 197 TSWHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIGGDIDARLI 276 (393)
T ss_dssp SCCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHH
T ss_pred hCCCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEEEEECCHHHH
Confidence 445678899999999998741 1222 4699999999999
Q ss_pred HHHHHc--------CCeEEEeecCCCCCCCCCccEEEehhhhh-hcCChhHHHHHHHHHHhcccc--CcEEEEEEcCc
Q 016157 156 KICVDR--------GHEVLVADAVNLPYRSDFGDAAISIAVLH-HLSTESRRKKAIEELVRVVKK--GSLVLITVWAV 222 (394)
Q Consensus 156 ~~a~~~--------~i~~~~~D~~~lp~~~~~fD~Vi~~~vl~-hl~~~~~~~~~L~ei~r~Lkp--GG~lli~~~~~ 222 (394)
+.|+++ .+++.++|+.+++.+ .+||+|+++--.. .+.+.+....+.+++.+.||+ ||.+++.+...
T Consensus 277 ~~Ar~Na~~~gl~~~I~~~~~D~~~~~~~-~~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~iit~~~ 353 (393)
T 3k0b_A 277 EIAKQNAVEAGLGDLITFRQLQVADFQTE-DEYGVVVANPPYGERLEDEEAVRQLYREMGIVYKRMPTWSVYVLTSYE 353 (393)
T ss_dssp HHHHHHHHHTTCTTCSEEEECCGGGCCCC-CCSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTCTTCEEEEEECCT
T ss_pred HHHHHHHHHcCCCCceEEEECChHhCCCC-CCCCEEEECCCCccccCCchhHHHHHHHHHHHHhcCCCCEEEEEECCH
Confidence 999986 378999999998764 5899999983221 122212244556666666665 99999887543
|
| >3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=98.50 E-value=2.8e-07 Score=91.64 Aligned_cols=104 Identities=13% Similarity=0.131 Sum_probs=78.0
Q ss_pred cCCCCCCEEEEEcCccCcccc--------cCCC----------------------------------cEEEEEeCCHHHH
Q 016157 118 NSLPSGSLVLDAGCGNGKYLG--------LNPD----------------------------------CFFVGCDISPSLI 155 (394)
Q Consensus 118 ~~l~~g~~VLDvGCG~G~~l~--------~~~~----------------------------------~~v~gvD~S~~~l 155 (394)
....++..|||.+||+|.++- ..|| ..++|+|+++.|+
T Consensus 190 ~~~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~GvDid~~al 269 (384)
T 3ldg_A 190 SNWFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDISGFDFDGRMV 269 (384)
T ss_dssp TTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHH
T ss_pred hCCCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEEEEECCHHHH
Confidence 345678899999999998741 1122 4699999999999
Q ss_pred HHHHHc--------CCeEEEeecCCCCCCCCCccEEEehhhhh-hcCChhHHHHHHHHHHhcccc--CcEEEEEEcCc
Q 016157 156 KICVDR--------GHEVLVADAVNLPYRSDFGDAAISIAVLH-HLSTESRRKKAIEELVRVVKK--GSLVLITVWAV 222 (394)
Q Consensus 156 ~~a~~~--------~i~~~~~D~~~lp~~~~~fD~Vi~~~vl~-hl~~~~~~~~~L~ei~r~Lkp--GG~lli~~~~~ 222 (394)
+.|+++ .+++.++|+.+++.+ ..||+|+++--.. -+.+......+.+++.+.||+ ||.+++.+...
T Consensus 270 ~~Ar~Na~~~gl~~~I~~~~~D~~~l~~~-~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~lk~~~g~~~~iit~~~ 346 (384)
T 3ldg_A 270 EIARKNAREVGLEDVVKLKQMRLQDFKTN-KINGVLISNPPYGERLLDDKAVDILYNEMGETFAPLKTWSQFILTNDT 346 (384)
T ss_dssp HHHHHHHHHTTCTTTEEEEECCGGGCCCC-CCSCEEEECCCCTTTTSCHHHHHHHHHHHHHHHTTCTTSEEEEEESCT
T ss_pred HHHHHHHHHcCCCCceEEEECChHHCCcc-CCcCEEEECCchhhccCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCH
Confidence 999986 268999999998764 5899999983322 244434466677777777776 99999988643
|
| >3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=98.47 E-value=2.5e-07 Score=92.03 Aligned_cols=103 Identities=22% Similarity=0.233 Sum_probs=76.2
Q ss_pred CCCCCCEEEEEcCccCcccc--------cCC----------------------------------CcEEEEEeCCHHHHH
Q 016157 119 SLPSGSLVLDAGCGNGKYLG--------LNP----------------------------------DCFFVGCDISPSLIK 156 (394)
Q Consensus 119 ~l~~g~~VLDvGCG~G~~l~--------~~~----------------------------------~~~v~gvD~S~~~l~ 156 (394)
...++..|||+|||+|.++. ..| ...|+|+|+++.+++
T Consensus 192 ~~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~ai~ 271 (385)
T 3ldu_A 192 PWKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYGYDIDEESID 271 (385)
T ss_dssp CCCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEEEEESCHHHHH
T ss_pred CCCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEEEEECCHHHHH
Confidence 45678899999999998742 112 157999999999999
Q ss_pred HHHHc--------CCeEEEeecCCCCCCCCCccEEEehhhhh-hcCChhHHHHHHHHHHhcccc--CcEEEEEEcCc
Q 016157 157 ICVDR--------GHEVLVADAVNLPYRSDFGDAAISIAVLH-HLSTESRRKKAIEELVRVVKK--GSLVLITVWAV 222 (394)
Q Consensus 157 ~a~~~--------~i~~~~~D~~~lp~~~~~fD~Vi~~~vl~-hl~~~~~~~~~L~ei~r~Lkp--GG~lli~~~~~ 222 (394)
.|+++ .+++.++|+.+++.+ ..||+|+++--.. .+.+.+....+.+++.+.||+ ||.+++.+...
T Consensus 272 ~Ar~Na~~~gl~~~i~~~~~D~~~l~~~-~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~iit~~~ 347 (385)
T 3ldu_A 272 IARENAEIAGVDEYIEFNVGDATQFKSE-DEFGFIITNPPYGERLEDKDSVKQLYKELGYAFRKLKNWSYYLITSYE 347 (385)
T ss_dssp HHHHHHHHHTCGGGEEEEECCGGGCCCS-CBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTSBSCEEEEEESCT
T ss_pred HHHHHHHHcCCCCceEEEECChhhcCcC-CCCcEEEECCCCcCccCCHHHHHHHHHHHHHHHhhCCCCEEEEEECCH
Confidence 99986 368999999998764 5899999965432 222223356677777777776 99988887543
|
| >3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.43 E-value=4.4e-07 Score=85.17 Aligned_cols=67 Identities=12% Similarity=0.149 Sum_probs=54.3
Q ss_pred CCCCCCEEEEEcCccCccccc--CCCcEEEEEeCCHHHHHHHHHc-----CCeEEEeecCCCCCCC----CCccEEEeh
Q 016157 119 SLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR-----GHEVLVADAVNLPYRS----DFGDAAISI 186 (394)
Q Consensus 119 ~l~~g~~VLDvGCG~G~~l~~--~~~~~v~gvD~S~~~l~~a~~~-----~i~~~~~D~~~lp~~~----~~fD~Vi~~ 186 (394)
.+.++.+|||||||+|.++.. ..+..|+|+|+++.|++.++++ +++++++|+..+++++ +.|| |+++
T Consensus 26 ~~~~~~~VLEIG~G~G~lt~~La~~~~~V~avEid~~~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~~~~-vv~N 103 (255)
T 3tqs_A 26 HPQKTDTLVEIGPGRGALTDYLLTECDNLALVEIDRDLVAFLQKKYNQQKNITIYQNDALQFDFSSVKTDKPLR-VVGN 103 (255)
T ss_dssp CCCTTCEEEEECCTTTTTHHHHTTTSSEEEEEECCHHHHHHHHHHHTTCTTEEEEESCTTTCCGGGSCCSSCEE-EEEE
T ss_pred CCCCcCEEEEEcccccHHHHHHHHhCCEEEEEECCHHHHHHHHHHHhhCCCcEEEEcchHhCCHHHhccCCCeE-EEec
Confidence 356788999999999998542 3457999999999999999886 6899999999988643 4688 5554
|
| >3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A* | Back alignment and structure |
|---|
Probab=98.37 E-value=1.3e-07 Score=88.94 Aligned_cols=111 Identities=13% Similarity=0.111 Sum_probs=73.4
Q ss_pred HHHHHHHc--CCCCCCEEEEEcCccCccccc---CCC-cEEEEEeCCHHHHHHHHHc-----CCeEEEeecCCCCCCCCC
Q 016157 111 PKVATFLN--SLPSGSLVLDAGCGNGKYLGL---NPD-CFFVGCDISPSLIKICVDR-----GHEVLVADAVNLPYRSDF 179 (394)
Q Consensus 111 ~~l~~~l~--~l~~g~~VLDvGCG~G~~l~~---~~~-~~v~gvD~S~~~l~~a~~~-----~i~~~~~D~~~lp~~~~~ 179 (394)
-++.++.. .+.++.+|||+|||+|.++.. ..+ ..+.|+|++..+....... ++..+..++....+..+.
T Consensus 61 ~KL~ei~ek~~l~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~~~pi~~~~~g~~ii~~~~~~dv~~l~~~~ 140 (277)
T 3evf_A 61 AKLRWFHERGYVKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHEKPMNVQSLGWNIITFKDKTDIHRLEPVK 140 (277)
T ss_dssp HHHHHHHHTTSSCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTCCCCCCCCBTTGGGEEEECSCCTTTSCCCC
T ss_pred HHHHHHHHhCCCCCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCcccccccCcCCCCeEEEeccceehhcCCCC
Confidence 34444433 467888999999999998652 223 3788888885541111110 345566666555667789
Q ss_pred ccEEEehhhhh---hcCChhHHHHHHHHHHhccccC-cEEEEEEcC
Q 016157 180 GDAAISIAVLH---HLSTESRRKKAIEELVRVVKKG-SLVLITVWA 221 (394)
Q Consensus 180 fD~Vi~~~vl~---hl~~~~~~~~~L~ei~r~LkpG-G~lli~~~~ 221 (394)
||+|+|....+ +..+..+...+|+.+.++|||| |.|++-+|.
T Consensus 141 ~DlVlsD~apnsG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~KVf~ 186 (277)
T 3evf_A 141 CDTLLCDIGESSSSSVTEGERTVRVLDTVEKWLACGVDNFCVKVLA 186 (277)
T ss_dssp CSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESC
T ss_pred ccEEEecCccCcCchHHHHHHHHHHHHHHHHHhCCCCCeEEEEecC
Confidence 99999976544 1112122234578889999999 999999998
|
| >3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A* | Back alignment and structure |
|---|
Probab=98.34 E-value=2.6e-07 Score=87.49 Aligned_cols=69 Identities=14% Similarity=0.160 Sum_probs=56.4
Q ss_pred CCCCCCEEEEEcCccCccccc--CCCcEEEEEeCCHHHHHHHHHc----CCeEEEeecCCCCCCCC-CccEEEehhh
Q 016157 119 SLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR----GHEVLVADAVNLPYRSD-FGDAAISIAV 188 (394)
Q Consensus 119 ~l~~g~~VLDvGCG~G~~l~~--~~~~~v~gvD~S~~~l~~a~~~----~i~~~~~D~~~lp~~~~-~fD~Vi~~~v 188 (394)
.+.++ +|||||||+|.++.. ..+..|+|+|+++.|++.++++ +++++++|+..+++++. .+|.|+++--
T Consensus 44 ~~~~~-~VLEIG~G~G~lt~~L~~~~~~V~avEid~~~~~~l~~~~~~~~v~vi~~D~l~~~~~~~~~~~~iv~NlP 119 (271)
T 3fut_A 44 RPFTG-PVFEVGPGLGALTRALLEAGAEVTAIEKDLRLRPVLEETLSGLPVRLVFQDALLYPWEEVPQGSLLVANLP 119 (271)
T ss_dssp CCCCS-CEEEECCTTSHHHHHHHHTTCCEEEEESCGGGHHHHHHHTTTSSEEEEESCGGGSCGGGSCTTEEEEEEEC
T ss_pred CCCCC-eEEEEeCchHHHHHHHHHcCCEEEEEECCHHHHHHHHHhcCCCCEEEEECChhhCChhhccCccEEEecCc
Confidence 35678 999999999997542 3357899999999999999886 58999999999887643 6888887654
|
| >3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.29 E-value=9.6e-07 Score=87.29 Aligned_cols=102 Identities=15% Similarity=0.102 Sum_probs=72.0
Q ss_pred CCEEEEEcCccCccccc-------------------CCCcEEEEEeCCHHHHHHHHHc-------------------CCe
Q 016157 123 GSLVLDAGCGNGKYLGL-------------------NPDCFFVGCDISPSLIKICVDR-------------------GHE 164 (394)
Q Consensus 123 g~~VLDvGCG~G~~l~~-------------------~~~~~v~gvD~S~~~l~~a~~~-------------------~i~ 164 (394)
..+|+|+|||+|..+.. .|...|+..|+........=+. +-.
T Consensus 53 ~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~~ 132 (374)
T 3b5i_A 53 PFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRSY 132 (374)
T ss_dssp CEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBCS
T ss_pred ceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCce
Confidence 47899999999985310 2678999999877653221110 112
Q ss_pred EEEee---cCCCCCCCCCccEEEehhhhhhcCChh-----------------------------------HHHHHHHHHH
Q 016157 165 VLVAD---AVNLPYRSDFGDAAISIAVLHHLSTES-----------------------------------RRKKAIEELV 206 (394)
Q Consensus 165 ~~~~D---~~~lp~~~~~fD~Vi~~~vl~hl~~~~-----------------------------------~~~~~L~ei~ 206 (394)
|+.+. +..-.|++++||+|+++.+|||++... +...+|+..+
T Consensus 133 f~~gvpgSFy~rlfP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~ra 212 (374)
T 3b5i_A 133 FVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRARA 212 (374)
T ss_dssp EEEEEESCTTSCCSCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEecChhhhcccCCCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333 333457899999999999999997421 2445789999
Q ss_pred hccccCcEEEEEEcCccc
Q 016157 207 RVVKKGSLVLITVWAVEQ 224 (394)
Q Consensus 207 r~LkpGG~lli~~~~~~~ 224 (394)
+.|+|||++++...+...
T Consensus 213 ~eL~pGG~mvl~~~gr~~ 230 (374)
T 3b5i_A 213 AEVKRGGAMFLVCLGRTS 230 (374)
T ss_dssp HHEEEEEEEEEEEEECCC
T ss_pred HHhCCCCEEEEEEecCCC
Confidence 999999999999886543
|
| >2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B* | Back alignment and structure |
|---|
Probab=98.27 E-value=4.3e-07 Score=94.15 Aligned_cols=134 Identities=7% Similarity=0.137 Sum_probs=79.1
Q ss_pred HHHHHHHHHHhhccccccc------cccchHHHHHHH---cCCCCCCEEEEEcCccCccccc--------C---------
Q 016157 87 EKKYVHRVYDAIAPHFSST------RFAKWPKVATFL---NSLPSGSLVLDAGCGNGKYLGL--------N--------- 140 (394)
Q Consensus 87 ~~~~v~~~Yd~~a~~y~~~------~~~~~~~l~~~l---~~l~~g~~VLDvGCG~G~~l~~--------~--------- 140 (394)
+.+.+..+|+.....|... .+-..+.+..++ ....++.+|||.|||+|.++.. .
T Consensus 125 ~~d~lG~~YE~ll~~~a~~~~~~~G~fyTP~~iv~~mv~~l~p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~ 204 (541)
T 2ar0_A 125 SRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGD 204 (541)
T ss_dssp -------------------------CCCCCHHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHH
T ss_pred ChhHHHHHHHHHHHHHHHhccccCCeeeCCHHHHHHHHHHhccCCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHH
Confidence 3456677777766655321 111112232222 2345678999999999997521 1
Q ss_pred -----CCcEEEEEeCCHHHHHHHHHc----C--------CeEEEeecCCCC-CCCCCccEEEehhhhhhcCC--------
Q 016157 141 -----PDCFFVGCDISPSLIKICVDR----G--------HEVLVADAVNLP-YRSDFGDAAISIAVLHHLST-------- 194 (394)
Q Consensus 141 -----~~~~v~gvD~S~~~l~~a~~~----~--------i~~~~~D~~~lp-~~~~~fD~Vi~~~vl~hl~~-------- 194 (394)
....++|+|+++.+++.|+.+ + ..+.++|....+ .....||+|+++-.+.....
T Consensus 205 ~~~~~~~~~i~GiEid~~~~~lA~~nl~l~gi~~~~~~~~~I~~gDtL~~~~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~ 284 (541)
T 2ar0_A 205 TQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFV 284 (541)
T ss_dssp HHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCS
T ss_pred HHhhhhcceEEEEcCCHHHHHHHHHHHHHhCCCccccccCCeEeCCCcccccccccCCeEEEECCCcccccchhhHhhcC
Confidence 124799999999999999865 2 568899987754 34578999999755443221
Q ss_pred ---hhHHHHHHHHHHhccccCcEEEEEEc
Q 016157 195 ---ESRRKKAIEELVRVVKKGSLVLITVW 220 (394)
Q Consensus 195 ---~~~~~~~L~ei~r~LkpGG~lli~~~ 220 (394)
...-..++..+.+.|||||++.+.++
T Consensus 285 ~~~~~~~~~Fl~~~l~~Lk~gGr~a~V~p 313 (541)
T 2ar0_A 285 HPTSNKQLCFMQHIIETLHPGGRAAVVVP 313 (541)
T ss_dssp SCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCCCchHHHHHHHHHHHhCCCCEEEEEec
Confidence 11124789999999999999999875
|
| >3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B* | Back alignment and structure |
|---|
Probab=98.26 E-value=2.4e-06 Score=79.76 Aligned_cols=58 Identities=21% Similarity=0.353 Sum_probs=48.6
Q ss_pred CCCCCEEEEEcCccCccccc---CCCcEEEEEeCCHHHHHHHHHc---CCeEEEeecCCCCCCC
Q 016157 120 LPSGSLVLDAGCGNGKYLGL---NPDCFFVGCDISPSLIKICVDR---GHEVLVADAVNLPYRS 177 (394)
Q Consensus 120 l~~g~~VLDvGCG~G~~l~~---~~~~~v~gvD~S~~~l~~a~~~---~i~~~~~D~~~lp~~~ 177 (394)
+.++.+|||||||+|.++.. .+...|+|+|+++.|++.++++ +++++++|+..+++++
T Consensus 29 ~~~~~~VLDiG~G~G~lt~~L~~~~~~~v~avEid~~~~~~~~~~~~~~v~~i~~D~~~~~~~~ 92 (249)
T 3ftd_A 29 IEEGNTVVEVGGGTGNLTKVLLQHPLKKLYVIELDREMVENLKSIGDERLEVINEDASKFPFCS 92 (249)
T ss_dssp CCTTCEEEEEESCHHHHHHHHTTSCCSEEEEECCCHHHHHHHTTSCCTTEEEECSCTTTCCGGG
T ss_pred CCCcCEEEEEcCchHHHHHHHHHcCCCeEEEEECCHHHHHHHHhccCCCeEEEEcchhhCChhH
Confidence 45788999999999997532 2247999999999999999886 5789999999998764
|
| >3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.24 E-value=4.1e-07 Score=89.73 Aligned_cols=91 Identities=12% Similarity=0.084 Sum_probs=66.7
Q ss_pred CCEEEEEcCccCccccc--CCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeecCCCC--CCC--------------
Q 016157 123 GSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLP--YRS-------------- 177 (394)
Q Consensus 123 g~~VLDvGCG~G~~l~~--~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~lp--~~~-------------- 177 (394)
+.+|||+|||+|.++.. .....|+|+|+|+.+++.|+++ +++++.+|+.++. +..
T Consensus 214 ~~~vLDl~cG~G~~~l~la~~~~~V~gvd~~~~ai~~a~~n~~~ng~~~v~~~~~d~~~~~~~~~~~~~~~~l~~~~~~~ 293 (369)
T 3bt7_A 214 KGDLLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKS 293 (369)
T ss_dssp CSEEEEESCTTSHHHHHHGGGSSEEEEECCCHHHHHHHHHHHHHTTCCSEEEECCCSHHHHHHHSSCCCCTTGGGSCGGG
T ss_pred CCEEEEccCCCCHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHHhhcccccccccccccc
Confidence 57899999999997431 2345899999999999999875 4689999987642 111
Q ss_pred CCccEEEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCc
Q 016157 178 DFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAV 222 (394)
Q Consensus 178 ~~fD~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~ 222 (394)
..||+|++.- . +..+..++.+.|+++|++++...+.
T Consensus 294 ~~fD~Vv~dP------P---r~g~~~~~~~~l~~~g~ivyvsc~p 329 (369)
T 3bt7_A 294 YQCETIFVDP------P---RSGLDSETEKMVQAYPRILYISCNP 329 (369)
T ss_dssp CCEEEEEECC------C---TTCCCHHHHHHHTTSSEEEEEESCH
T ss_pred CCCCEEEECc------C---ccccHHHHHHHHhCCCEEEEEECCH
Confidence 3799998642 1 1234566777788999988877654
|
| >2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A* | Back alignment and structure |
|---|
Probab=98.19 E-value=5.1e-07 Score=89.55 Aligned_cols=91 Identities=18% Similarity=0.066 Sum_probs=69.3
Q ss_pred CCCEEEEEcCccCccc----ccCCCcEEEEEeCCHHHHHHHHHc---C-------------------CeEEEeecCCCCC
Q 016157 122 SGSLVLDAGCGNGKYL----GLNPDCFFVGCDISPSLIKICVDR---G-------------------HEVLVADAVNLPY 175 (394)
Q Consensus 122 ~g~~VLDvGCG~G~~l----~~~~~~~v~gvD~S~~~l~~a~~~---~-------------------i~~~~~D~~~lp~ 175 (394)
++.+|||+|||+|... ...+...|+++|+++.+++.++++ + ++++++|+..+..
T Consensus 47 ~~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~~ 126 (378)
T 2dul_A 47 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA 126 (378)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred CCCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHHHH
Confidence 5789999999999863 223556899999999999998864 2 6788888876431
Q ss_pred -CCCCccEEEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 016157 176 -RSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 176 -~~~~fD~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~ 219 (394)
..+.||+|++.-. .. ...++..+.+.|||||.++++.
T Consensus 127 ~~~~~fD~I~lDP~----~~---~~~~l~~a~~~lk~gG~l~vt~ 164 (378)
T 2dul_A 127 ERHRYFHFIDLDPF----GS---PMEFLDTALRSAKRRGILGVTA 164 (378)
T ss_dssp HSTTCEEEEEECCS----SC---CHHHHHHHHHHEEEEEEEEEEE
T ss_pred hccCCCCEEEeCCC----CC---HHHHHHHHHHhcCCCCEEEEEe
Confidence 1357999996431 11 3578999999999999887764
|
| >2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=98.17 E-value=5.1e-07 Score=84.85 Aligned_cols=73 Identities=14% Similarity=0.066 Sum_probs=55.5
Q ss_pred CCCCCCEEEEEcCccCcccc--cCCCcEEEEEeCCH-------HHHHHHHHc-------C-CeEEEeecCCC-C-CCC--
Q 016157 119 SLPSGSLVLDAGCGNGKYLG--LNPDCFFVGCDISP-------SLIKICVDR-------G-HEVLVADAVNL-P-YRS-- 177 (394)
Q Consensus 119 ~l~~g~~VLDvGCG~G~~l~--~~~~~~v~gvD~S~-------~~l~~a~~~-------~-i~~~~~D~~~l-p-~~~-- 177 (394)
.+.++.+|||+|||+|.++. ...+..|+|+|+++ .+++.|+++ + ++++++|+.++ + +++
T Consensus 80 ~~~~~~~VLDlgcG~G~~a~~lA~~g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~~l~~~~~~~ 159 (258)
T 2r6z_A 80 NHTAHPTVWDATAGLGRDSFVLASLGLTVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQMPALVKTQ 159 (258)
T ss_dssp TGGGCCCEEETTCTTCHHHHHHHHTTCCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHHHHHHHHHH
T ss_pred CcCCcCeEEEeeCccCHHHHHHHHhCCEEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHHHHHhhhccC
Confidence 34567899999999999742 12367999999999 999988764 3 89999999874 3 444
Q ss_pred CCccEEEehhhhhh
Q 016157 178 DFGDAAISIAVLHH 191 (394)
Q Consensus 178 ~~fD~Vi~~~vl~h 191 (394)
++||+|++.-.++|
T Consensus 160 ~~fD~V~~dP~~~~ 173 (258)
T 2r6z_A 160 GKPDIVYLDPMYPE 173 (258)
T ss_dssp CCCSEEEECCCC--
T ss_pred CCccEEEECCCCCC
Confidence 78999999765554
|
| >2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A* | Back alignment and structure |
|---|
Probab=98.14 E-value=5.4e-06 Score=82.09 Aligned_cols=103 Identities=19% Similarity=0.121 Sum_probs=74.0
Q ss_pred CCEEEEEcCccCcccc------------c---------CCCcEEEEEeCC-----------HHHHHHHHHc-----CCeE
Q 016157 123 GSLVLDAGCGNGKYLG------------L---------NPDCFFVGCDIS-----------PSLIKICVDR-----GHEV 165 (394)
Q Consensus 123 g~~VLDvGCG~G~~l~------------~---------~~~~~v~gvD~S-----------~~~l~~a~~~-----~i~~ 165 (394)
..+|+|+||++|..+. . .|...|+..|+. +.+.+.+++. +.-|
T Consensus 53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~g~~~~~~f 132 (384)
T 2efj_A 53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKENGRKIGSCL 132 (384)
T ss_dssp EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHTCCCTTSEE
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhhccCCCCceE
Confidence 4689999999998531 0 256789999998 5555544332 2356
Q ss_pred EEeecCC---CCCCCCCccEEEehhhhhhcCChhH------------------------------------HHHHHHHHH
Q 016157 166 LVADAVN---LPYRSDFGDAAISIAVLHHLSTESR------------------------------------RKKAIEELV 206 (394)
Q Consensus 166 ~~~D~~~---lp~~~~~fD~Vi~~~vl~hl~~~~~------------------------------------~~~~L~ei~ 206 (394)
+.+.... -.|++++||+|+++++|||+++... ...+|+..+
T Consensus 133 ~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~FL~~Ra 212 (384)
T 2efj_A 133 IGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFLRIHS 212 (384)
T ss_dssp EEECCSCTTSCCSCTTCEEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEecchhhhhccCCCCceEEEEecceeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6665444 5688999999999999999875320 112377779
Q ss_pred hccccCcEEEEEEcCccch
Q 016157 207 RVVKKGSLVLITVWAVEQE 225 (394)
Q Consensus 207 r~LkpGG~lli~~~~~~~~ 225 (394)
+.|+|||++++...+....
T Consensus 213 ~eL~pGG~mvl~~~gr~~~ 231 (384)
T 2efj_A 213 EELISRGRMLLTFICKEDE 231 (384)
T ss_dssp HHEEEEEEEEEEEECCCTT
T ss_pred HHhccCCeEEEEEecCCCc
Confidence 9999999999999876543
|
| >3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=98.13 E-value=1.6e-05 Score=82.36 Aligned_cols=101 Identities=17% Similarity=0.143 Sum_probs=75.1
Q ss_pred CCCCEEEEEcCccCccccc-------CCCcEEEEEeCCHHHHHHHHHc----CC-----eEEEeecCCC--C-CCCCCcc
Q 016157 121 PSGSLVLDAGCGNGKYLGL-------NPDCFFVGCDISPSLIKICVDR----GH-----EVLVADAVNL--P-YRSDFGD 181 (394)
Q Consensus 121 ~~g~~VLDvGCG~G~~l~~-------~~~~~v~gvD~S~~~l~~a~~~----~i-----~~~~~D~~~l--p-~~~~~fD 181 (394)
.++.+|||.+||+|.++.. .....++|+|+++.++..|+.+ ++ .+.++|.... | .....||
T Consensus 220 ~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~~~~I~~gDtL~~d~p~~~~~~fD 299 (542)
T 3lkd_A 220 KQGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVPIENQFLHNADTLDEDWPTQEPTNFD 299 (542)
T ss_dssp CTTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCTTTSCSCCSSCCCBS
T ss_pred CCCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCCcCccceEecceeccccccccccccc
Confidence 4678999999999998642 2356899999999999999865 43 6889998876 4 3467899
Q ss_pred EEEehhhhhh-------------------cCChh-HHHHHHHHHHhccc-cCcEEEEEEcC
Q 016157 182 AAISIAVLHH-------------------LSTES-RRKKAIEELVRVVK-KGSLVLITVWA 221 (394)
Q Consensus 182 ~Vi~~~vl~h-------------------l~~~~-~~~~~L~ei~r~Lk-pGG~lli~~~~ 221 (394)
+|+++--+.. ++... .-..++..+.+.|| |||++.+.++.
T Consensus 300 ~IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~gGr~a~VlP~ 360 (542)
T 3lkd_A 300 GVLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQDNGVMAIVLPH 360 (542)
T ss_dssp EEEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTTTCEEEEEEET
T ss_pred EEEecCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCCceeEEEEecc
Confidence 9998632210 11100 01358999999999 99999998864
|
| >3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A* | Back alignment and structure |
|---|
Probab=98.13 E-value=1.1e-06 Score=87.49 Aligned_cols=92 Identities=18% Similarity=-0.003 Sum_probs=70.8
Q ss_pred CCCCEEEEEcCccCcccc----cCCC-cEEEEEeCCHHHHHHHHHc-------C--CeEEEeecCCCC--CCCCCccEEE
Q 016157 121 PSGSLVLDAGCGNGKYLG----LNPD-CFFVGCDISPSLIKICVDR-------G--HEVLVADAVNLP--YRSDFGDAAI 184 (394)
Q Consensus 121 ~~g~~VLDvGCG~G~~l~----~~~~-~~v~gvD~S~~~l~~a~~~-------~--i~~~~~D~~~lp--~~~~~fD~Vi 184 (394)
.+|.+|||++||+|.+.- ..++ ..|+++|+++.+++.++++ + ++++.+|+.++. ...+.||+|+
T Consensus 51 ~~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~~~~fD~V~ 130 (392)
T 3axs_A 51 GRPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEWGFGFDYVD 130 (392)
T ss_dssp CSCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSCCSSCEEEEE
T ss_pred CCCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHhhCCCCcEEE
Confidence 467899999999998632 2345 5899999999999999886 2 778889986532 1246799999
Q ss_pred ehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 016157 185 SIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 185 ~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~ 219 (394)
+.- ... ...++..+.+.|+|||.++++.
T Consensus 131 lDP----~g~---~~~~l~~a~~~Lk~gGll~~t~ 158 (392)
T 3axs_A 131 LDP----FGT---PVPFIESVALSMKRGGILSLTA 158 (392)
T ss_dssp ECC----SSC---CHHHHHHHHHHEEEEEEEEEEE
T ss_pred ECC----CcC---HHHHHHHHHHHhCCCCEEEEEe
Confidence 875 112 3568999999999999888775
|
| >1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A | Back alignment and structure |
|---|
Probab=98.13 E-value=9.2e-07 Score=82.83 Aligned_cols=70 Identities=9% Similarity=0.059 Sum_probs=54.0
Q ss_pred CCCCCCEEEEEcCccCcccccCCCcE--EEEEeCCHHHHHHHHHc-----CCeEEEeecCCCCCCC-----CCccEEEeh
Q 016157 119 SLPSGSLVLDAGCGNGKYLGLNPDCF--FVGCDISPSLIKICVDR-----GHEVLVADAVNLPYRS-----DFGDAAISI 186 (394)
Q Consensus 119 ~l~~g~~VLDvGCG~G~~l~~~~~~~--v~gvD~S~~~l~~a~~~-----~i~~~~~D~~~lp~~~-----~~fD~Vi~~ 186 (394)
.+.++.+|||||||+|.++....+.. |+|+|+++.|++.++++ +++++++|+..+++++ +..|.|+++
T Consensus 18 ~~~~~~~VLEIG~G~G~lt~l~~~~~~~v~avEid~~~~~~a~~~~~~~~~v~~i~~D~~~~~~~~~~~~~~~~~~vvsN 97 (252)
T 1qyr_A 18 NPQKGQAMVEIGPGLAALTEPVGERLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTFNFGELAEKMGQPLRVFGN 97 (252)
T ss_dssp CCCTTCCEEEECCTTTTTHHHHHTTCSCEEEECCCHHHHHHHHTCTTTGGGEEEECSCGGGCCHHHHHHHHTSCEEEEEE
T ss_pred CCCCcCEEEEECCCCcHHHHhhhCCCCeEEEEECCHHHHHHHHHHhccCCceEEEECchhhCCHHHhhcccCCceEEEEC
Confidence 35678899999999999865322346 99999999999999986 5899999999987643 234566665
Q ss_pred hh
Q 016157 187 AV 188 (394)
Q Consensus 187 ~v 188 (394)
-.
T Consensus 98 lP 99 (252)
T 1qyr_A 98 LP 99 (252)
T ss_dssp CC
T ss_pred CC
Confidence 43
|
| >3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=98.11 E-value=2.1e-06 Score=81.54 Aligned_cols=59 Identities=20% Similarity=0.266 Sum_probs=48.2
Q ss_pred CCCCCCEEEEEcCccCccccc-----CC-CcEEEEEeCCHHHHHHHHHc---CCeEEEeecCCCCCCC
Q 016157 119 SLPSGSLVLDAGCGNGKYLGL-----NP-DCFFVGCDISPSLIKICVDR---GHEVLVADAVNLPYRS 177 (394)
Q Consensus 119 ~l~~g~~VLDvGCG~G~~l~~-----~~-~~~v~gvD~S~~~l~~a~~~---~i~~~~~D~~~lp~~~ 177 (394)
.+.++.+|||||||+|.++.. .. +..|+|+|+++.|++.++++ +++++++|+..+++++
T Consensus 39 ~~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~~~~v~~i~~D~~~~~~~~ 106 (279)
T 3uzu_A 39 RPERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRFGELLELHAGDALTFDFGS 106 (279)
T ss_dssp CCCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHHGGGEEEEESCGGGCCGGG
T ss_pred CCCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhcCCCcEEEECChhcCChhH
Confidence 356788999999999998642 11 24499999999999999886 6899999999988653
|
| >1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A* | Back alignment and structure |
|---|
Probab=98.11 E-value=2.2e-06 Score=82.41 Aligned_cols=76 Identities=17% Similarity=0.331 Sum_probs=58.8
Q ss_pred HHHHHHHcCCCCCCEEEEEcCccCcccc----cCCCcEEEEEeCCHHHHHHHHHc------CCeEEEeecCCCC--CCC-
Q 016157 111 PKVATFLNSLPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR------GHEVLVADAVNLP--YRS- 177 (394)
Q Consensus 111 ~~l~~~l~~l~~g~~VLDvGCG~G~~l~----~~~~~~v~gvD~S~~~l~~a~~~------~i~~~~~D~~~lp--~~~- 177 (394)
..+...+. +.++.+|||+|||+|.++. ..++..|+|+|+|+.|++.|+++ +++++++|+.+++ +..
T Consensus 16 ~e~l~~L~-~~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g~~v~~v~~d~~~l~~~l~~~ 94 (301)
T 1m6y_A 16 REVIEFLK-PEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFLLKTL 94 (301)
T ss_dssp HHHHHHHC-CCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHHHHHT
T ss_pred HHHHHhcC-CCCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHhc
Confidence 34444443 5678899999999999743 34578999999999999999886 4789999998875 221
Q ss_pred --CCccEEEehh
Q 016157 178 --DFGDAAISIA 187 (394)
Q Consensus 178 --~~fD~Vi~~~ 187 (394)
..||.|++..
T Consensus 95 g~~~~D~Vl~D~ 106 (301)
T 1m6y_A 95 GIEKVDGILMDL 106 (301)
T ss_dssp TCSCEEEEEEEC
T ss_pred CCCCCCEEEEcC
Confidence 5799999754
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=98.09 E-value=8.1e-06 Score=87.16 Aligned_cols=104 Identities=19% Similarity=0.237 Sum_probs=72.8
Q ss_pred CCCCCCEEEEEcCccCcccc--------cCC--------------------------------------CcEEEEEeCCH
Q 016157 119 SLPSGSLVLDAGCGNGKYLG--------LNP--------------------------------------DCFFVGCDISP 152 (394)
Q Consensus 119 ~l~~g~~VLDvGCG~G~~l~--------~~~--------------------------------------~~~v~gvD~S~ 152 (394)
...++..|||.+||+|.++- ..| ...++|+|+++
T Consensus 187 ~~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~~~i~G~Did~ 266 (703)
T 3v97_A 187 GWQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYSSHFYGSDSDA 266 (703)
T ss_dssp TCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEESCH
T ss_pred CCCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCCccEEEEECCH
Confidence 45678899999999999741 112 24799999999
Q ss_pred HHHHHHHHc----C----CeEEEeecCCCC--CCCCCccEEEehhhhh-hcCChhH---HHHHHHHHHhccccCcEEEEE
Q 016157 153 SLIKICVDR----G----HEVLVADAVNLP--YRSDFGDAAISIAVLH-HLSTESR---RKKAIEELVRVVKKGSLVLIT 218 (394)
Q Consensus 153 ~~l~~a~~~----~----i~~~~~D~~~lp--~~~~~fD~Vi~~~vl~-hl~~~~~---~~~~L~ei~r~LkpGG~lli~ 218 (394)
.+++.|+.+ | +++.++|+.++. ...+.||+|+++--.. -+.+... ..+.|.++.+.+.|||++++.
T Consensus 267 ~av~~A~~N~~~agv~~~i~~~~~D~~~~~~~~~~~~~d~Iv~NPPYG~Rlg~~~~l~~ly~~l~~~lk~~~~g~~~~il 346 (703)
T 3v97_A 267 RVIQRARTNARLAGIGELITFEVKDVAQLTNPLPKGPYGTVLSNPPYGERLDSEPALIALHSLLGRIMKNQFGGWNLSLF 346 (703)
T ss_dssp HHHHHHHHHHHHTTCGGGEEEEECCGGGCCCSCTTCCCCEEEECCCCCC---CCHHHHHHHHHHHHHHHHHCTTCEEEEE
T ss_pred HHHHHHHHHHHHcCCCCceEEEECChhhCccccccCCCCEEEeCCCccccccchhHHHHHHHHHHHHHHhhCCCCeEEEE
Confidence 999999987 3 689999999874 3344899999983221 1222111 334455566666789999998
Q ss_pred EcCc
Q 016157 219 VWAV 222 (394)
Q Consensus 219 ~~~~ 222 (394)
+...
T Consensus 347 t~~~ 350 (703)
T 3v97_A 347 SASP 350 (703)
T ss_dssp ESCH
T ss_pred eCCH
Confidence 7543
|
| >1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35 | Back alignment and structure |
|---|
Probab=98.09 E-value=7.1e-06 Score=80.55 Aligned_cols=102 Identities=14% Similarity=0.077 Sum_probs=76.8
Q ss_pred CCEEEEEcCccCcccc--------------------cCCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeecC---
Q 016157 123 GSLVLDAGCGNGKYLG--------------------LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAV--- 171 (394)
Q Consensus 123 g~~VLDvGCG~G~~l~--------------------~~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~--- 171 (394)
.-+|+|+||++|..+- ..|...|+..|+..+.....-+. +.-|+.+...
T Consensus 52 ~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvpgSFy 131 (359)
T 1m6e_X 52 RLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSFY 131 (359)
T ss_dssp EECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCSS
T ss_pred ceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcccCCCEEEEecchhhh
Confidence 3679999999998531 13557899999988877665544 2245555443
Q ss_pred CCCCCCCCccEEEehhhhhhcCChh------------------------------HHHHHHHHHHhccccCcEEEEEEcC
Q 016157 172 NLPYRSDFGDAAISIAVLHHLSTES------------------------------RRKKAIEELVRVVKKGSLVLITVWA 221 (394)
Q Consensus 172 ~lp~~~~~fD~Vi~~~vl~hl~~~~------------------------------~~~~~L~ei~r~LkpGG~lli~~~~ 221 (394)
...|+++++|+|+++++|||++... +...+|+..++.|+|||++++...+
T Consensus 132 ~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~mvl~~~g 211 (359)
T 1m6e_X 132 GRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTILG 211 (359)
T ss_dssp SCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEEEE
T ss_pred hccCCCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEEec
Confidence 4668899999999999999987521 1345589999999999999999886
Q ss_pred ccc
Q 016157 222 VEQ 224 (394)
Q Consensus 222 ~~~ 224 (394)
...
T Consensus 212 r~~ 214 (359)
T 1m6e_X 212 RRS 214 (359)
T ss_dssp CSS
T ss_pred CCC
Confidence 654
|
| >3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A | Back alignment and structure |
|---|
Probab=98.06 E-value=2.4e-06 Score=89.98 Aligned_cols=93 Identities=13% Similarity=0.108 Sum_probs=67.7
Q ss_pred CCEEEEEcCccCccc----cc----C---------CCcEEEEEeCCHHHHHHHHHc-------CCeEEEeecCCCCCC--
Q 016157 123 GSLVLDAGCGNGKYL----GL----N---------PDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYR-- 176 (394)
Q Consensus 123 g~~VLDvGCG~G~~l----~~----~---------~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~lp~~-- 176 (394)
+..|||||||+|.+. .+ . ...+|+|||.|+.++...+.+ .++++.+|++++.++
T Consensus 410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~Ng~~d~VtVI~gd~eev~lp~~ 489 (745)
T 3ua3_A 410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNVRTWKRRVTIIESDMRSLPGIAK 489 (745)
T ss_dssp EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHHHTTTTCSEEEESCGGGHHHHHH
T ss_pred CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHhcCCCCeEEEEeCchhhcccccc
Confidence 458999999999973 11 1 234999999998766544433 489999999998663
Q ss_pred ---CCCccEEEehhhhhhcCChhHHHHHHHHHHhccccCcEEE
Q 016157 177 ---SDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVL 216 (394)
Q Consensus 177 ---~~~fD~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~ll 216 (394)
.+..|+||+-..=. +...|...+.|..+.+.|||||.++
T Consensus 490 ~~~~ekVDIIVSElmGs-fl~nEL~pe~Ld~v~r~Lkp~Gi~i 531 (745)
T 3ua3_A 490 DRGFEQPDIIVSELLGS-FGDNELSPECLDGVTGFLKPTTISI 531 (745)
T ss_dssp HTTCCCCSEEEECCCBT-TBGGGSHHHHHHTTGGGSCTTCEEE
T ss_pred cCCCCcccEEEEecccc-ccchhccHHHHHHHHHhCCCCcEEE
Confidence 57899999954422 2222335668888899999999865
|
| >4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A* | Back alignment and structure |
|---|
Probab=98.04 E-value=3.9e-06 Score=88.10 Aligned_cols=91 Identities=11% Similarity=0.180 Sum_probs=65.5
Q ss_pred CCEEEEEcCccCcccc--------cCCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeecCCCCCCCCCccEEEeh
Q 016157 123 GSLVLDAGCGNGKYLG--------LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISI 186 (394)
Q Consensus 123 g~~VLDvGCG~G~~l~--------~~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~lp~~~~~fD~Vi~~ 186 (394)
+..|||||||+|.+.. .....+|++||-|+. ...|++. .|+++++|++++..+ +.+|+||+=
T Consensus 358 ~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp~-A~~a~~~v~~N~~~dkVtVI~gd~eev~LP-EKVDIIVSE 435 (637)
T 4gqb_A 358 VQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNPN-AVVTLENWQFEEWGSQVTVVSSDMREWVAP-EKADIIVSE 435 (637)
T ss_dssp EEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCHH-HHHHHHHHHHHTTGGGEEEEESCTTTCCCS-SCEEEEECC
T ss_pred CcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCHH-HHHHHHHHHhccCCCeEEEEeCcceeccCC-cccCEEEEE
Confidence 3579999999998731 133348999999974 4455443 489999999998764 689999994
Q ss_pred hhhhhcCChhHHHHHHHHHHhccccCcEEE
Q 016157 187 AVLHHLSTESRRKKAIEELVRVVKKGSLVL 216 (394)
Q Consensus 187 ~vl~hl~~~~~~~~~L~ei~r~LkpGG~ll 216 (394)
..=..+..+. ....|....|.|||||.++
T Consensus 436 wMG~fLl~E~-mlevL~Ardr~LKPgGimi 464 (637)
T 4gqb_A 436 LLGSFADNEL-SPECLDGAQHFLKDDGVSI 464 (637)
T ss_dssp CCBTTBGGGC-HHHHHHHHGGGEEEEEEEE
T ss_pred cCcccccccC-CHHHHHHHHHhcCCCcEEc
Confidence 3322222222 4478888899999999864
|
| >3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=97.98 E-value=4.5e-06 Score=86.51 Aligned_cols=97 Identities=11% Similarity=0.072 Sum_probs=70.5
Q ss_pred EEEEEcCccCcccccC-------------------CCcEEEEEeCCHHHHHHHHHc----CC--eE--EEeecCCCC-CC
Q 016157 125 LVLDAGCGNGKYLGLN-------------------PDCFFVGCDISPSLIKICVDR----GH--EV--LVADAVNLP-YR 176 (394)
Q Consensus 125 ~VLDvGCG~G~~l~~~-------------------~~~~v~gvD~S~~~l~~a~~~----~i--~~--~~~D~~~lp-~~ 176 (394)
+|||.+||+|.++... ....++|+|+++.++++|+.+ ++ .+ .++|....+ +.
T Consensus 247 ~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~i~i~~gDtL~~~~~~ 326 (544)
T 3khk_A 247 RVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRGIDFNFGKKNADSFLDDQHP 326 (544)
T ss_dssp EEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTTCCCBCCSSSCCTTTSCSCT
T ss_pred eEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhCCCcccceeccchhcCcccc
Confidence 9999999999975320 146899999999999999875 32 23 677876655 45
Q ss_pred CCCccEEEehhhhhh-------------------------cCCh-hHHHHHHHHHHhccccCcEEEEEEcC
Q 016157 177 SDFGDAAISIAVLHH-------------------------LSTE-SRRKKAIEELVRVVKKGSLVLITVWA 221 (394)
Q Consensus 177 ~~~fD~Vi~~~vl~h-------------------------l~~~-~~~~~~L~ei~r~LkpGG~lli~~~~ 221 (394)
...||+|+++--+.. ++.. ..-..+|+.+.+.|||||++.+.++.
T Consensus 327 ~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~aiVlP~ 397 (544)
T 3khk_A 327 DLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLHMLYHLAPTGSMALLLAN 397 (544)
T ss_dssp TCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHHHHHTEEEEEEEEEEEET
T ss_pred cccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHHHHHHhccCceEEEEecc
Confidence 678999999643321 1110 00136899999999999999998854
|
| >3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus} | Back alignment and structure |
|---|
Probab=97.92 E-value=2.1e-06 Score=80.93 Aligned_cols=102 Identities=13% Similarity=0.091 Sum_probs=67.4
Q ss_pred CCCCCCEEEEEcCccCccccc----CCCcEEEEEeCCHHHHHHHHH-----cCCeEEEeecCCCCCCCCCccEEEehhhh
Q 016157 119 SLPSGSLVLDAGCGNGKYLGL----NPDCFFVGCDISPSLIKICVD-----RGHEVLVADAVNLPYRSDFGDAAISIAVL 189 (394)
Q Consensus 119 ~l~~g~~VLDvGCG~G~~l~~----~~~~~v~gvD~S~~~l~~a~~-----~~i~~~~~D~~~lp~~~~~fD~Vi~~~vl 189 (394)
.+.++.+|||+|||+|.++.. .+...++|+|++..+...+.. .++..+..++....+..+.+|+|+|-...
T Consensus 87 ~Lk~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~~~pi~~~~~g~~ii~~~~~~dv~~l~~~~~DvVLSDmAp 166 (282)
T 3gcz_A 87 YVKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKPIMRTTLGWNLIRFKDKTDVFNMEVIPGDTLLCDIGE 166 (282)
T ss_dssp SCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCCCBTTGGGEEEECSCCGGGSCCCCCSEEEECCCC
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCccccccccccCCCceEEeeCCcchhhcCCCCcCEEEecCcc
Confidence 467889999999999998652 333478999998764322221 02333333322233456889999997654
Q ss_pred hhcCC----hhHHHHHHHHHHhccccC--cEEEEEEcC
Q 016157 190 HHLST----ESRRKKAIEELVRVVKKG--SLVLITVWA 221 (394)
Q Consensus 190 ~hl~~----~~~~~~~L~ei~r~LkpG--G~lli~~~~ 221 (394)
+ ... ..+...+|.-+.++|+|| |.|++-+|.
T Consensus 167 n-sG~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~KvF~ 203 (282)
T 3gcz_A 167 S-SPSIAVEEQRTLRVLNCAKQWLQEGNYTEFCIKVLC 203 (282)
T ss_dssp C-CSCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEESC
T ss_pred C-CCChHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEec
Confidence 4 221 112234577788999999 999999998
|
| >3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.92 E-value=2.8e-05 Score=74.20 Aligned_cols=95 Identities=21% Similarity=0.224 Sum_probs=74.0
Q ss_pred CCCCEEEEEcCccCcccc----cCCCcEEEEEeCCHHHHHHHHHc------------CCeEEEeecCCC-CCCCCCccEE
Q 016157 121 PSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR------------GHEVLVADAVNL-PYRSDFGDAA 183 (394)
Q Consensus 121 ~~g~~VLDvGCG~G~~l~----~~~~~~v~gvD~S~~~l~~a~~~------------~i~~~~~D~~~l-p~~~~~fD~V 183 (394)
+...+||=||.|.|..++ ..+...|+.+|+.+.+++.|++. +++++.+|+... .-..++||+|
T Consensus 82 p~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~~~~yDvI 161 (294)
T 3o4f_A 82 GHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDVI 161 (294)
T ss_dssp SCCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCSSCCEEEE
T ss_pred CCCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhccccCCEE
Confidence 344699999999998754 34456899999999999999875 478999998874 3446789999
Q ss_pred Eehhh-----hhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 016157 184 ISIAV-----LHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 184 i~~~v-----l~hl~~~~~~~~~L~ei~r~LkpGG~lli~~ 219 (394)
|.-.. -.++-+ ..+++.+.++|+|||+++...
T Consensus 162 i~D~~dp~~~~~~L~t----~eFy~~~~~~L~p~Gv~v~q~ 198 (294)
T 3o4f_A 162 ISDCTDPIGPGESLFT----SAFYEGCKRCLNPGGIFVAQN 198 (294)
T ss_dssp EESCCCCCCTTCCSSC----CHHHHHHHHTEEEEEEEEEEE
T ss_pred EEeCCCcCCCchhhcC----HHHHHHHHHHhCCCCEEEEec
Confidence 97432 123333 578999999999999999865
|
| >2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str} | Back alignment and structure |
|---|
Probab=97.86 E-value=1.2e-05 Score=68.65 Aligned_cols=100 Identities=17% Similarity=0.184 Sum_probs=68.9
Q ss_pred hHHHHHHHc-CCCCCCEEEEEcCccCc-ccc---cCCCcEEEEEeCCHHHHHHHHHcCCeEEEeecCCCCCCC-CCccEE
Q 016157 110 WPKVATFLN-SLPSGSLVLDAGCGNGK-YLG---LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRS-DFGDAA 183 (394)
Q Consensus 110 ~~~l~~~l~-~l~~g~~VLDvGCG~G~-~l~---~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~lp~~~-~~fD~V 183 (394)
|..+..++. ...++.+|||||||+|. .+. ...++.|+++|+++..++ ++..|+.+....- ..||+|
T Consensus 22 ~e~LaeYI~~~~~~~~rVlEVG~G~g~~vA~~La~~~g~~V~atDInp~Av~--------~v~dDiF~P~~~~Y~~~DLI 93 (153)
T 2k4m_A 22 WNDLAVYIIRCSGPGTRVVEVGAGRFLYVSDYIRKHSKVDLVLTDIKPSHGG--------IVRDDITSPRMEIYRGAALI 93 (153)
T ss_dssp HHHHHHHHHHHSCSSSEEEEETCTTCCHHHHHHHHHSCCEEEEECSSCSSTT--------EECCCSSSCCHHHHTTEEEE
T ss_pred HHHHHHHHHhcCCCCCcEEEEccCCChHHHHHHHHhCCCeEEEEECCccccc--------eEEccCCCCcccccCCcCEE
Confidence 444444433 34556799999999995 433 247889999999998765 8899998843211 489999
Q ss_pred EehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCccch
Q 016157 184 ISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQE 225 (394)
Q Consensus 184 i~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~~~~ 225 (394)
.++.. .++ +...|.++++. -|.-++|.....+..
T Consensus 94 YsirP-----P~E-l~~~i~~lA~~--v~adliI~pL~~E~~ 127 (153)
T 2k4m_A 94 YSIRP-----PAE-IHSSLMRVADA--VGARLIIKPLTGEDI 127 (153)
T ss_dssp EEESC-----CTT-THHHHHHHHHH--HTCEEEEECBTTBCC
T ss_pred EEcCC-----CHH-HHHHHHHHHHH--cCCCEEEEcCCCCcC
Confidence 88652 223 56677777764 467788887766553
|
| >3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=97.81 E-value=7.4e-05 Score=67.49 Aligned_cols=90 Identities=10% Similarity=0.076 Sum_probs=65.9
Q ss_pred CCCEEEEEcCccCcc-cccCCCcEEEEEeCCHHHHHHHHHc----C------CeEEEeecCCC---------------C-
Q 016157 122 SGSLVLDAGCGNGKY-LGLNPDCFFVGCDISPSLIKICVDR----G------HEVLVADAVNL---------------P- 174 (394)
Q Consensus 122 ~g~~VLDvGCG~G~~-l~~~~~~~v~gvD~S~~~l~~a~~~----~------i~~~~~D~~~l---------------p- 174 (394)
...+|||+|||.... +...++.+|+.+|.+++..+.|++. + ++++.+|+... +
T Consensus 30 ~a~~VLEiGtGySTl~lA~~~~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~~~~wg~p~~~~~~~~l~~ 109 (202)
T 3cvo_A 30 EAEVILEYGSGGSTVVAAELPGKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIGPTGDWGHPVSDAKWRSYPD 109 (202)
T ss_dssp HCSEEEEESCSHHHHHHHTSTTCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSSBCGGGCBSSSTTGGGTTH
T ss_pred CCCEEEEECchHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCchhhhcccccccchhhhhHHH
Confidence 457999999974332 2223478999999999999998864 4 57888997542 2
Q ss_pred -------C-CCCCccEEEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 016157 175 -------Y-RSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 175 -------~-~~~~fD~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~ 219 (394)
. ..++||+|+.-+- . +...+..+.+.|+|||++++..
T Consensus 110 ~~~~i~~~~~~~~fDlIfIDg~-----k---~~~~~~~~l~~l~~GG~Iv~DN 154 (202)
T 3cvo_A 110 YPLAVWRTEGFRHPDVVLVDGR-----F---RVGCALATAFSITRPVTLLFDD 154 (202)
T ss_dssp HHHGGGGCTTCCCCSEEEECSS-----S---HHHHHHHHHHHCSSCEEEEETT
T ss_pred HhhhhhccccCCCCCEEEEeCC-----C---chhHHHHHHHhcCCCeEEEEeC
Confidence 1 1378999998763 1 3467777889999999997764
|
| >3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=97.80 E-value=7.8e-06 Score=81.66 Aligned_cols=67 Identities=13% Similarity=0.072 Sum_probs=53.2
Q ss_pred CCCCCEEEEEcCccCcccc--cCCCcEEEEEeCCHHHHHHHHHc------C---CeEEEeecCCC-CC-CCCCccEEEeh
Q 016157 120 LPSGSLVLDAGCGNGKYLG--LNPDCFFVGCDISPSLIKICVDR------G---HEVLVADAVNL-PY-RSDFGDAAISI 186 (394)
Q Consensus 120 l~~g~~VLDvGCG~G~~l~--~~~~~~v~gvD~S~~~l~~a~~~------~---i~~~~~D~~~l-p~-~~~~fD~Vi~~ 186 (394)
+.+|.+|||+|||+|..+. ...+..|+|+|+|+.|++.|+++ + ++++++|+.+. +. .++.||+|++.
T Consensus 91 l~~g~~VLDLgcG~G~~al~LA~~g~~V~~VD~s~~~l~~Ar~N~~~~~~gl~~i~~i~~Da~~~L~~~~~~~fDvV~lD 170 (410)
T 3ll7_A 91 IREGTKVVDLTGGLGIDFIALMSKASQGIYIERNDETAVAARHNIPLLLNEGKDVNILTGDFKEYLPLIKTFHPDYIYVD 170 (410)
T ss_dssp SCTTCEEEESSCSSSHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHSCTTCEEEEEESCGGGSHHHHHHHCCSEEEEC
T ss_pred cCCCCEEEEeCCCchHHHHHHHhcCCEEEEEECCHHHHHHHHHhHHHhccCCCcEEEEECcHHHhhhhccCCCceEEEEC
Confidence 4458999999999999742 23467999999999999999876 2 68999999874 32 24689999984
|
| >4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A* | Back alignment and structure |
|---|
Probab=97.74 E-value=3.9e-05 Score=75.37 Aligned_cols=117 Identities=16% Similarity=0.119 Sum_probs=81.5
Q ss_pred HHHHHHcCCCCCCEEEEEcCccCcc----cccCCCcEEEEEeCCHHHHHHHHHc-------------CCeEEEeecCCCC
Q 016157 112 KVATFLNSLPSGSLVLDAGCGNGKY----LGLNPDCFFVGCDISPSLIKICVDR-------------GHEVLVADAVNLP 174 (394)
Q Consensus 112 ~l~~~l~~l~~g~~VLDvGCG~G~~----l~~~~~~~v~gvD~S~~~l~~a~~~-------------~i~~~~~D~~~lp 174 (394)
.+...+..+.||.+|||+++|+|.= +....+..++++|+++.-++..+++ ++.+...|...++
T Consensus 138 ~l~~~~L~~~pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~ 217 (359)
T 4fzv_A 138 LLPVLALGLQPGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWG 217 (359)
T ss_dssp HHHHHHHCCCTTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGHH
T ss_pred HHHHHHhCCCCCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhcc
Confidence 3445555788999999999999972 3345556899999999877666543 3566777877654
Q ss_pred -CCCCCccEEEeh----h----hhhhcCC------hh-------HHHHHHHHHHhccccCcEEEEEEcCccchhhh
Q 016157 175 -YRSDFGDAAISI----A----VLHHLST------ES-------RRKKAIEELVRVVKKGSLVLITVWAVEQEDKS 228 (394)
Q Consensus 175 -~~~~~fD~Vi~~----~----vl~hl~~------~~-------~~~~~L~ei~r~LkpGG~lli~~~~~~~~~~~ 228 (394)
...+.||.|++- + ++..-++ .+ ...++|..+.+.|||||+|+-++-+...+++.
T Consensus 218 ~~~~~~fD~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVYsTCSl~~~ENE 293 (359)
T 4fzv_A 218 ELEGDTYDRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYSTCSLSHLQNE 293 (359)
T ss_dssp HHSTTCEEEEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEESCCCTTTTH
T ss_pred hhccccCCEEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCchhhCH
Confidence 345789999862 2 1111110 00 12578889999999999999999888766544
|
| >3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A* | Back alignment and structure |
|---|
Probab=97.68 E-value=2.2e-05 Score=74.43 Aligned_cols=103 Identities=17% Similarity=0.117 Sum_probs=65.3
Q ss_pred cCCCCCCEEEEEcCccCccccc----CCCcEEEEEeCCHHHHHHHHH-----cCCeEEEeecCCCCCCCCCccEEEehhh
Q 016157 118 NSLPSGSLVLDAGCGNGKYLGL----NPDCFFVGCDISPSLIKICVD-----RGHEVLVADAVNLPYRSDFGDAAISIAV 188 (394)
Q Consensus 118 ~~l~~g~~VLDvGCG~G~~l~~----~~~~~v~gvD~S~~~l~~a~~-----~~i~~~~~D~~~lp~~~~~fD~Vi~~~v 188 (394)
..+.++.+|||+||++|.++.. .+-..|+|+|++..+...... .++..+..++.-..+..+.+|+|+|-..
T Consensus 77 ~l~~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~~~~~P~~~~~~~~~iv~~~~~~di~~l~~~~~DlVlsD~A 156 (300)
T 3eld_A 77 GYLRITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGHEKPIHMQTLGWNIVKFKDKSNVFTMPTEPSDTLLCDIG 156 (300)
T ss_dssp TSCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCCCBTTGGGEEEECSCCTTTSCCCCCSEEEECCC
T ss_pred CCCCCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEeccccccccccccccCCceEEeecCceeeecCCCCcCEEeecCc
Confidence 5577899999999999998643 233378899997643211100 0122223222222344678999999654
Q ss_pred hhhcCC----hhHHHHHHHHHHhccccC-cEEEEEEcC
Q 016157 189 LHHLST----ESRRKKAIEELVRVVKKG-SLVLITVWA 221 (394)
Q Consensus 189 l~hl~~----~~~~~~~L~ei~r~LkpG-G~lli~~~~ 221 (394)
-+ ... ..+...+|.-+.++|+|| |.|++-+|.
T Consensus 157 Pn-sG~~~~D~~rs~~LL~~A~~~LkpG~G~FV~KvF~ 193 (300)
T 3eld_A 157 ES-SSNPLVERDRTMKVLENFERWKHVNTENFCVKVLA 193 (300)
T ss_dssp CC-CSSHHHHHHHHHHHHHHHHHHCCTTCCEEEEEESS
T ss_pred CC-CCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEecc
Confidence 43 211 112234577778999999 999999987
|
| >3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus} | Back alignment and structure |
|---|
Probab=97.65 E-value=5.9e-05 Score=80.62 Aligned_cols=101 Identities=11% Similarity=0.096 Sum_probs=69.1
Q ss_pred CCCCEEEEEcCccCccccc----CC---CcEEEEEeCCHHHHHHH--HHc--------C---CeEEEeecCCCC-CCCCC
Q 016157 121 PSGSLVLDAGCGNGKYLGL----NP---DCFFVGCDISPSLIKIC--VDR--------G---HEVLVADAVNLP-YRSDF 179 (394)
Q Consensus 121 ~~g~~VLDvGCG~G~~l~~----~~---~~~v~gvD~S~~~l~~a--~~~--------~---i~~~~~D~~~lp-~~~~~ 179 (394)
+++.+|||.|||+|.++.. .+ ...++|+|+++.+++.| +.. + ..+...|+.... .....
T Consensus 320 ~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~L~~~~~~~~k 399 (878)
T 3s1s_A 320 TEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSLNPEDFAN 399 (878)
T ss_dssp CTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEECCCGGGCCGGGGTT
T ss_pred CCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCCCcceEEecchhcccccccCC
Confidence 4678999999999997532 22 35799999999999999 322 1 244455555532 34578
Q ss_pred ccEEEehhhhhh-cCChh-------------------------HHHHHHHHHHhccccCcEEEEEEcC
Q 016157 180 GDAAISIAVLHH-LSTES-------------------------RRKKAIEELVRVVKKGSLVLITVWA 221 (394)
Q Consensus 180 fD~Vi~~~vl~h-l~~~~-------------------------~~~~~L~ei~r~LkpGG~lli~~~~ 221 (394)
||+|+++--.-. ..... --..+++.+.+.|+|||++.+.++.
T Consensus 400 FDVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKpGGrLAfIlP~ 467 (878)
T 3s1s_A 400 VSVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQDGTVISAIMPK 467 (878)
T ss_dssp EEEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCTTCEEEEEEET
T ss_pred CCEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcCCCcEEEEEECh
Confidence 999999643311 11100 0235788999999999999999864
|
| >2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A* | Back alignment and structure |
|---|
Probab=97.65 E-value=1.3e-05 Score=74.47 Aligned_cols=102 Identities=17% Similarity=0.186 Sum_probs=62.0
Q ss_pred CCCCCCEEEEEcCccCccccc---CCCc-EEEEEeCCHH--HHHHHHH-cCC---eEEEe-ecCCCCCCCCCccEEEehh
Q 016157 119 SLPSGSLVLDAGCGNGKYLGL---NPDC-FFVGCDISPS--LIKICVD-RGH---EVLVA-DAVNLPYRSDFGDAAISIA 187 (394)
Q Consensus 119 ~l~~g~~VLDvGCG~G~~l~~---~~~~-~v~gvD~S~~--~l~~a~~-~~i---~~~~~-D~~~lp~~~~~fD~Vi~~~ 187 (394)
.++||.+|||+||++|.++.+ ..+. .|.|.++... +...... .++ .+.++ |+.+++ ...+|+|+|-.
T Consensus 70 likpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~~~~P~~~~~~Gv~~i~~~~G~Df~~~~--~~~~DvVLSDM 147 (269)
T 2px2_A 70 FVQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPGHEEPMLMQSYGWNIVTMKSGVDVFYKP--SEISDTLLCDI 147 (269)
T ss_dssp SCCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCGGGSC--CCCCSEEEECC
T ss_pred CCCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEccccccCCCcccCCCceEEEeeccCCccCCC--CCCCCEEEeCC
Confidence 578999999999999997643 2112 3344444332 1111101 244 34446 998754 45799999944
Q ss_pred hhh---hcCChhHHHHHHHHHHhccccCc-EEEEEEcCc
Q 016157 188 VLH---HLSTESRRKKAIEELVRVVKKGS-LVLITVWAV 222 (394)
Q Consensus 188 vl~---hl~~~~~~~~~L~ei~r~LkpGG-~lli~~~~~ 222 (394)
.=. ...+..+...+|.-+.++|+||| .|++-+|..
T Consensus 148 APnSG~~~vD~~Rs~~aL~~A~~~Lk~gG~~FvvKVFqg 186 (269)
T 2px2_A 148 GESSPSAEIEEQRTLRILEMVSDWLSRGPKEFCIKILCP 186 (269)
T ss_dssp CCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESCT
T ss_pred CCCCCccHHHHHHHHHHHHHHHHHhhcCCcEEEEEECCC
Confidence 211 01111122236777779999999 999999984
|
| >2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A | Back alignment and structure |
|---|
Probab=97.62 E-value=1.3e-05 Score=75.21 Aligned_cols=91 Identities=13% Similarity=0.120 Sum_probs=60.0
Q ss_pred CCCCC--CEEEEEcCccCcccc--cCCCcEEEEEeCCHHH-------HHHHHH---------cCCeEEEeecCC-CCCCC
Q 016157 119 SLPSG--SLVLDAGCGNGKYLG--LNPDCFFVGCDISPSL-------IKICVD---------RGHEVLVADAVN-LPYRS 177 (394)
Q Consensus 119 ~l~~g--~~VLDvGCG~G~~l~--~~~~~~v~gvD~S~~~-------l~~a~~---------~~i~~~~~D~~~-lp~~~ 177 (394)
.+.++ .+|||+|||+|.... ...+..|+++|+++.+ ++.+++ .+++++++|+.+ ++...
T Consensus 83 ~l~~g~~~~VLDl~~G~G~dal~lA~~g~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~~~~L~~~~ 162 (258)
T 2oyr_A 83 GIKGDYLPDVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDIT 162 (258)
T ss_dssp TCBTTBCCCEEETTCTTCHHHHHHHHHTCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTCS
T ss_pred cccCCCCCEEEEcCCcCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCHHHHHHhCc
Confidence 34566 899999999999632 1235689999999976 333321 247899999877 34223
Q ss_pred CCccEEEehhhhhhcCChhHHHHHHHHHHhccccCc
Q 016157 178 DFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGS 213 (394)
Q Consensus 178 ~~fD~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG 213 (394)
+.||+|++.-.+.+-.. ..++++..++|++.+
T Consensus 163 ~~fDvV~lDP~y~~~~~----saavkk~~~~lr~l~ 194 (258)
T 2oyr_A 163 PRPQVVYLDPMFPHKQK----SALVKKEMRVFQSLV 194 (258)
T ss_dssp SCCSEEEECCCCCCCCC---------HHHHHHHHHS
T ss_pred ccCCEEEEcCCCCCccc----chHHHHHHHHHHHhh
Confidence 47999999877655322 356777777887755
|
| >4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A* | Back alignment and structure |
|---|
Probab=97.61 E-value=6.8e-05 Score=73.60 Aligned_cols=86 Identities=15% Similarity=0.148 Sum_probs=62.3
Q ss_pred CCCCCCEEEEEcCccCccccc--CCCcEEEEEeCCHHHHHHHHH-cCCeEEEeecCCCCCCCCCccEEEehhhhhhcCCh
Q 016157 119 SLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVD-RGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTE 195 (394)
Q Consensus 119 ~l~~g~~VLDvGCG~G~~l~~--~~~~~v~gvD~S~~~l~~a~~-~~i~~~~~D~~~lp~~~~~fD~Vi~~~vl~hl~~~ 195 (394)
.+.+|.++||+||++|.++.. ..+..|+|||+.+ |-..... .+++++++|+.........||+|+|-.+. .
T Consensus 208 ~l~~G~~vlDLGAaPGGWT~~l~~rg~~V~aVD~~~-l~~~l~~~~~V~~~~~d~~~~~~~~~~~D~vvsDm~~----~- 281 (375)
T 4auk_A 208 RLANGMWAVDLGACPGGWTYQLVKRNMWVYSVDNGP-MAQSLMDTGQVTWLREDGFKFRPTRSNISWMVCDMVE----K- 281 (375)
T ss_dssp HSCTTCEEEEETCTTCHHHHHHHHTTCEEEEECSSC-CCHHHHTTTCEEEECSCTTTCCCCSSCEEEEEECCSS----C-
T ss_pred cCCCCCEEEEeCcCCCHHHHHHHHCCCEEEEEEhhh-cChhhccCCCeEEEeCccccccCCCCCcCEEEEcCCC----C-
Confidence 367899999999999998653 4578999999864 3333333 37999999999987777889999997654 2
Q ss_pred hHHHHHHHHHHhccccC
Q 016157 196 SRRKKAIEELVRVVKKG 212 (394)
Q Consensus 196 ~~~~~~L~ei~r~LkpG 212 (394)
+...+.-+.+.|..|
T Consensus 282 --p~~~~~l~~~wl~~~ 296 (375)
T 4auk_A 282 --PAKVAALMAQWLVNG 296 (375)
T ss_dssp --HHHHHHHHHHHHHTT
T ss_pred --hHHhHHHHHHHHhcc
Confidence 344444455544444
|
| >2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.56 E-value=1.6e-05 Score=74.57 Aligned_cols=95 Identities=13% Similarity=0.153 Sum_probs=62.3
Q ss_pred CCCCEEEEEcCccCccccc-----------CC-----CcEEEEEeCCH---HHHH-----------HHHHc---------
Q 016157 121 PSGSLVLDAGCGNGKYLGL-----------NP-----DCFFVGCDISP---SLIK-----------ICVDR--------- 161 (394)
Q Consensus 121 ~~g~~VLDvGCG~G~~l~~-----------~~-----~~~v~gvD~S~---~~l~-----------~a~~~--------- 161 (394)
.++.+|||||+|+|..+.. .| ...++++|..+ +++. .|++.
T Consensus 59 ~~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~ 138 (257)
T 2qy6_A 59 HPLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLP 138 (257)
T ss_dssp SSEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCS
T ss_pred CCCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhcccccc
Confidence 3456999999999995321 34 25899999776 4433 33321
Q ss_pred ------------CCeEEEeecCC-CCCCC----CCccEEEehhh-hhhcCChh-HHHHHHHHHHhccccCcEEEE
Q 016157 162 ------------GHEVLVADAVN-LPYRS----DFGDAAISIAV-LHHLSTES-RRKKAIEELVRVVKKGSLVLI 217 (394)
Q Consensus 162 ------------~i~~~~~D~~~-lp~~~----~~fD~Vi~~~v-l~hl~~~~-~~~~~L~ei~r~LkpGG~lli 217 (394)
+++++.+|+.+ ++..+ ..||+|+.-.. -.. .++ --..+|+.+.++|||||+|+.
T Consensus 139 g~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~fsp~~--~p~lw~~~~l~~l~~~L~pGG~l~t 211 (257)
T 2qy6_A 139 GCHRLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFLDGFAPAK--NPDMWTQNLFNAMARLARPGGTLAT 211 (257)
T ss_dssp EEEEEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEECSSCTTT--CGGGCCHHHHHHHHHHEEEEEEEEE
T ss_pred chhheeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEECCCCccc--ChhhcCHHHHHHHHHHcCCCcEEEE
Confidence 35678888876 44322 27999998531 110 111 025799999999999999884
|
| >3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus} | Back alignment and structure |
|---|
Probab=97.37 E-value=0.0004 Score=65.71 Aligned_cols=101 Identities=16% Similarity=0.131 Sum_probs=71.0
Q ss_pred CCCCCCEEEEEcCccCcccc---cCCCc-EEEEEeCCHHH------HHHHHHcCCeEEEe-ecCCCCCCCCCccEEEehh
Q 016157 119 SLPSGSLVLDAGCGNGKYLG---LNPDC-FFVGCDISPSL------IKICVDRGHEVLVA-DAVNLPYRSDFGDAAISIA 187 (394)
Q Consensus 119 ~l~~g~~VLDvGCG~G~~l~---~~~~~-~v~gvD~S~~~------l~~a~~~~i~~~~~-D~~~lp~~~~~fD~Vi~~~ 187 (394)
.+.++..|||+||++|.+.. ...++ .|+|+|+...- ++...-+.+.++.+ |+..++. ..+|+|+|--
T Consensus 91 ~l~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he~P~~~~ql~w~lV~~~~~~Dv~~l~~--~~~D~ivcDi 168 (321)
T 3lkz_A 91 FLEPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEEPQLVQSYGWNIVTMKSGVDVFYRPS--ECCDTLLCDI 168 (321)
T ss_dssp SCCCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSCCCCCCCBTTGGGEEEECSCCTTSSCC--CCCSEEEECC
T ss_pred CCCCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCccCcchhhhcCCcceEEEeccCHhhCCC--CCCCEEEEEC
Confidence 46788899999999999764 24444 79999998761 11111123677777 8877764 5699999865
Q ss_pred hhhhcCCh----hHHHHHHHHHHhccccC-cEEEEEEcCc
Q 016157 188 VLHHLSTE----SRRKKAIEELVRVVKKG-SLVLITVWAV 222 (394)
Q Consensus 188 vl~hl~~~----~~~~~~L~ei~r~LkpG-G~lli~~~~~ 222 (394)
. +--+++ +|-.++|.-+.+.|++| |-|+|-++..
T Consensus 169 g-eSs~~~~ve~~Rtl~vLel~~~wL~~~~~~f~~KVl~p 207 (321)
T 3lkz_A 169 G-ESSSSAEVEEHRTIRVLEMVEDWLHRGPREFCVKVLCP 207 (321)
T ss_dssp C-CCCSCHHHHHHHHHHHHHHHHHHHTTCCCEEEEEESCT
T ss_pred c-cCCCChhhhhhHHHHHHHHHHHHhccCCCcEEEEEcCC
Confidence 5 443332 23345777778999999 9999999876
|
| >3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=97.22 E-value=0.001 Score=68.54 Aligned_cols=135 Identities=19% Similarity=0.284 Sum_probs=87.9
Q ss_pred HHHHHHHHHHhhccccccc-----cccchHHHHHHHc---CCCCCCEEEEEcCccCccccc--------C---------C
Q 016157 87 EKKYVHRVYDAIAPHFSST-----RFAKWPKVATFLN---SLPSGSLVLDAGCGNGKYLGL--------N---------P 141 (394)
Q Consensus 87 ~~~~v~~~Yd~~a~~y~~~-----~~~~~~~l~~~l~---~l~~g~~VLDvGCG~G~~l~~--------~---------~ 141 (394)
+.+-+.++|+.+-..|... .+-..+.+..++. ...++.+|+|-+||+|.++.. . .
T Consensus 174 ~~d~lG~~yE~ll~~~~~~~g~~GqfyTP~~Vv~lmv~l~~p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~ 253 (530)
T 3ufb_A 174 EMHTLSRLYETMLREMRDAAGDSGEFYTPRPVVRFMVEVMDPQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQ 253 (530)
T ss_dssp HHHHHHHHHHHHHHHHTTSSSSCCCCCCCHHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHhcCcCceECCcHHHHHHHHHhhccCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHh
Confidence 4456777787765555321 1222233433332 346778999999999998631 1 1
Q ss_pred CcEEEEEeCCHHHHHHHHHc----C---CeEEEeecCCCCCC----CCCccEEEehhhhhh-------------cCChhH
Q 016157 142 DCFFVGCDISPSLIKICVDR----G---HEVLVADAVNLPYR----SDFGDAAISIAVLHH-------------LSTESR 197 (394)
Q Consensus 142 ~~~v~gvD~S~~~l~~a~~~----~---i~~~~~D~~~lp~~----~~~fD~Vi~~~vl~h-------------l~~~~~ 197 (394)
...++|+|+++.+..+|+-+ + ..+..+|....|.. ...||+|+++--+.- .+....
T Consensus 254 ~~~i~G~E~~~~~~~la~mNl~lhg~~~~~I~~~dtL~~~~~~~~~~~~fD~Il~NPPf~~~~~~~~~~~~~~~~~~~~~ 333 (530)
T 3ufb_A 254 ESSIFGGEAKSLPYLLVQMNLLLHGLEYPRIDPENSLRFPLREMGDKDRVDVILTNPPFGGEEEKGILGNFPEDMQTAET 333 (530)
T ss_dssp TCCEEEECCSHHHHHHHHHHHHHHTCSCCEEECSCTTCSCGGGCCGGGCBSEEEECCCSSCBCCHHHHTTSCGGGCCCBH
T ss_pred hhhhhhhhccHHHHHHHHHHHHhcCCccccccccccccCchhhhcccccceEEEecCCCCccccccccccCchhcccchh
Confidence 34699999999999999864 3 35778887765532 357999999654321 111111
Q ss_pred HHHHHHHHHhccc-------cCcEEEEEEcC
Q 016157 198 RKKAIEELVRVVK-------KGSLVLITVWA 221 (394)
Q Consensus 198 ~~~~L~ei~r~Lk-------pGG~lli~~~~ 221 (394)
-..+++.+.+.|| |||++.+.++.
T Consensus 334 ~~~Fl~~~l~~Lk~~~~~l~~gGr~avVlP~ 364 (530)
T 3ufb_A 334 AMLFLQLIMRKLKRPGHGSDNGGRAAVVVPN 364 (530)
T ss_dssp HHHHHHHHHHHBCCTTSSSSSCCEEEEEEEH
T ss_pred HHHHHHHHHHHhhhhhhccCCCceEEEEecc
Confidence 2457888888887 79999999863
|
| >3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A* | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00033 Score=68.94 Aligned_cols=98 Identities=19% Similarity=0.133 Sum_probs=69.7
Q ss_pred CCCEEEEEcCccCccccc---CCCcEEEEEeCCHHHHHHHHHc---------------CCeEEEeecCCCC----CCCCC
Q 016157 122 SGSLVLDAGCGNGKYLGL---NPDCFFVGCDISPSLIKICVDR---------------GHEVLVADAVNLP----YRSDF 179 (394)
Q Consensus 122 ~g~~VLDvGCG~G~~l~~---~~~~~v~gvD~S~~~l~~a~~~---------------~i~~~~~D~~~lp----~~~~~ 179 (394)
+..+||=||.|.|..++. .+...|+.+|+.+.+++.|++. +++++.+|+...- -..+.
T Consensus 205 ~pkrVLIIGgGdG~~~revlkh~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~~~~ 284 (381)
T 3c6k_A 205 TGKDVLILGGGDGGILCEIVKLKPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEGRE 284 (381)
T ss_dssp TTCEEEEEECTTCHHHHHHHTTCCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHTCC
T ss_pred CCCeEEEECCCcHHHHHHHHhcCCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhccCc
Confidence 457999999999997542 3446899999999999999974 2567778875421 13468
Q ss_pred ccEEEehhhh-------hhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 016157 180 GDAAISIAVL-------HHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 180 fD~Vi~~~vl-------~hl~~~~~~~~~L~ei~r~LkpGG~lli~~ 219 (394)
||+||.-..- .+.....--..+++.+.++|+|||+++...
T Consensus 285 yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~Q~ 331 (381)
T 3c6k_A 285 FDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQG 331 (381)
T ss_dssp EEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred eeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEEec
Confidence 9999975321 111111113678899999999999998753
|
| >3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A* | Back alignment and structure |
|---|
Probab=97.02 E-value=0.00081 Score=61.73 Aligned_cols=102 Identities=17% Similarity=0.107 Sum_probs=70.1
Q ss_pred CCCCCCEEEEEcCccCcccc---cCCCc-EEEEEeCCHHHHHH---HHH---cCCeEEEe-ecCCCCCCCCCccEEEehh
Q 016157 119 SLPSGSLVLDAGCGNGKYLG---LNPDC-FFVGCDISPSLIKI---CVD---RGHEVLVA-DAVNLPYRSDFGDAAISIA 187 (394)
Q Consensus 119 ~l~~g~~VLDvGCG~G~~l~---~~~~~-~v~gvD~S~~~l~~---a~~---~~i~~~~~-D~~~lp~~~~~fD~Vi~~~ 187 (394)
.+.++.+|||+||++|.+.. ...+. .|+|+|+...-.+. .+. ..+.|..+ |+..++. ..+|.|+|-.
T Consensus 75 ~l~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe~P~~~~s~gwn~v~fk~gvDv~~~~~--~~~DtllcDI 152 (267)
T 3p8z_A 75 MVIPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEEPVPMSTYGWNIVKLMSGKDVFYLPP--EKCDTLLCDI 152 (267)
T ss_dssp SSCCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCCCCCTTTTSEEEECSCCGGGCCC--CCCSEEEECC
T ss_pred CCCCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCccCcchhhhcCcCceEEEeccceeecCC--ccccEEEEec
Confidence 46788999999999999865 23444 79999997642210 001 25788888 9877653 6699999943
Q ss_pred hhhhcCC----hhHHHHHHHHHHhccccCcEEEEEEcCccc
Q 016157 188 VLHHLST----ESRRKKAIEELVRVVKKGSLVLITVWAVEQ 224 (394)
Q Consensus 188 vl~hl~~----~~~~~~~L~ei~r~LkpGG~lli~~~~~~~ 224 (394)
.= --++ .+|-.++|+-+.+.|++ |.|+|-++....
T Consensus 153 ge-Ss~~~~vE~~RtlrvLela~~wL~~-~~fc~KVl~py~ 191 (267)
T 3p8z_A 153 GE-SSPSPTVEESRTIRVLKMVEPWLKN-NQFCIKVLNPYM 191 (267)
T ss_dssp CC-CCSCHHHHHHHHHHHHHHHGGGCSS-CEEEEEESCCCS
T ss_pred CC-CCCChhhhhhHHHHHHHHHHHhccc-CCEEEEEccCCC
Confidence 32 1111 12334578888899999 899999987655
|
| >3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.85 E-value=0.001 Score=64.41 Aligned_cols=75 Identities=13% Similarity=0.118 Sum_probs=54.4
Q ss_pred HHHHHHHcCCCCCCEEEEEcCccCccc----cc-CCCcEEEEEeCCHHHHHHHHHc---CCeEEEeecCCCC--CC----
Q 016157 111 PKVATFLNSLPSGSLVLDAGCGNGKYL----GL-NPDCFFVGCDISPSLIKICVDR---GHEVLVADAVNLP--YR---- 176 (394)
Q Consensus 111 ~~l~~~l~~l~~g~~VLDvGCG~G~~l----~~-~~~~~v~gvD~S~~~l~~a~~~---~i~~~~~D~~~lp--~~---- 176 (394)
.++...+. +.||..++|..||.|..+ .. .+...|+|+|.++.+++.|++. ++.++++++.++. +.
T Consensus 47 ~Evl~~L~-i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~rL~~~Rv~lv~~nF~~l~~~L~~~g~ 125 (347)
T 3tka_A 47 DEAVNGLN-IRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAKTIDDPRFSIIHGPFSALGEYVAERDL 125 (347)
T ss_dssp HHHHHHTC-CCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHTTCCCTTEEEEESCGGGHHHHHHHTTC
T ss_pred HHHHHhhC-CCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHhhcCCcEEEEeCCHHHHHHHHHhcCC
Confidence 44555553 578899999999999863 22 5678999999999999998521 4678888887753 11
Q ss_pred CCCccEEEeh
Q 016157 177 SDFGDAAISI 186 (394)
Q Consensus 177 ~~~fD~Vi~~ 186 (394)
.+++|.|+..
T Consensus 126 ~~~vDgILfD 135 (347)
T 3tka_A 126 IGKIDGILLD 135 (347)
T ss_dssp TTCEEEEEEE
T ss_pred CCcccEEEEC
Confidence 1358888663
|
| >2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus} | Back alignment and structure |
|---|
Probab=96.83 E-value=0.0013 Score=62.28 Aligned_cols=92 Identities=14% Similarity=-0.000 Sum_probs=66.0
Q ss_pred CEEEEEcCccCcccc----c-----CCCcEEEEEeCCHH--------------------------HHHHHHHc-------
Q 016157 124 SLVLDAGCGNGKYLG----L-----NPDCFFVGCDISPS--------------------------LIKICVDR------- 161 (394)
Q Consensus 124 ~~VLDvGCG~G~~l~----~-----~~~~~v~gvD~S~~--------------------------~l~~a~~~------- 161 (394)
..|||+|+..|..+. . .++.+++++|.... .++.++++
T Consensus 108 g~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~gl~ 187 (282)
T 2wk1_A 108 GDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNYDLL 187 (282)
T ss_dssp CEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHTTCC
T ss_pred CcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHcCCC
Confidence 489999999998431 1 14778999996421 23444433
Q ss_pred --CCeEEEeecCC-CC-CCCCCccEEEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 016157 162 --GHEVLVADAVN-LP-YRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (394)
Q Consensus 162 --~i~~~~~D~~~-lp-~~~~~fD~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~ 220 (394)
+++++.+|+.+ +| ++.++||+|+.-.-.. +.....|..+...|+|||.+++..+
T Consensus 188 ~~~I~li~Gda~etL~~~~~~~~d~vfIDaD~y-----~~~~~~Le~~~p~L~pGGiIv~DD~ 245 (282)
T 2wk1_A 188 DEQVRFLPGWFKDTLPTAPIDTLAVLRMDGDLY-----ESTWDTLTNLYPKVSVGGYVIVDDY 245 (282)
T ss_dssp STTEEEEESCHHHHSTTCCCCCEEEEEECCCSH-----HHHHHHHHHHGGGEEEEEEEEESSC
T ss_pred cCceEEEEeCHHHHHhhCCCCCEEEEEEcCCcc-----ccHHHHHHHHHhhcCCCEEEEEcCC
Confidence 47899999865 44 3457899999876321 1146789999999999999999876
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=96.79 E-value=0.00066 Score=81.66 Aligned_cols=96 Identities=18% Similarity=0.250 Sum_probs=49.7
Q ss_pred CCCCEEEEEcCccCccccc-------CC--CcEEEEEeCCHHHHHHHHHc----CCeEEEeecCCC-CCCCCCccEEEeh
Q 016157 121 PSGSLVLDAGCGNGKYLGL-------NP--DCFFVGCDISPSLIKICVDR----GHEVLVADAVNL-PYRSDFGDAAISI 186 (394)
Q Consensus 121 ~~g~~VLDvGCG~G~~l~~-------~~--~~~v~gvD~S~~~l~~a~~~----~i~~~~~D~~~l-p~~~~~fD~Vi~~ 186 (394)
.+..+|||||.|+|..+.. .+ ...++.+|+|+...+.|+++ .++.-..|..+. ++....||+|++.
T Consensus 1239 ~~~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~~di~~~~~d~~~~~~~~~~~ydlvia~ 1318 (2512)
T 2vz8_A 1239 SPKMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQLHVTQGQWDPANPAPGSLGKADLLVCN 1318 (2512)
T ss_dssp SSEEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHHHTEEEECCCSSCCCC-----CCEEEEE
T ss_pred CCCceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhhcccccccccccccccCCCCceeEEEEc
Confidence 4567999999999986432 11 23789999999888776665 222211233332 3345679999999
Q ss_pred hhhhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 016157 187 AVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 187 ~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~ 219 (394)
.++|..++ ....|.++.++|||||.+++..
T Consensus 1319 ~vl~~t~~---~~~~l~~~~~lL~p~G~l~~~e 1348 (2512)
T 2vz8_A 1319 CALATLGD---PAVAVGNMAATLKEGGFLLLHT 1348 (2512)
T ss_dssp CC-----------------------CCEEEEEE
T ss_pred cccccccc---HHHHHHHHHHhcCCCcEEEEEe
Confidence 99987776 6789999999999999998865
|
| >1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23 | Back alignment and structure |
|---|
Probab=96.77 E-value=0.0012 Score=62.30 Aligned_cols=74 Identities=16% Similarity=0.199 Sum_probs=53.3
Q ss_pred HHHHHHHcCCCCCCEEEEEcCccCccccc--CCCcEEEEEeCCHHHHHHHHH---cCCeEEEeecCCCC-----CCCCCc
Q 016157 111 PKVATFLNSLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVD---RGHEVLVADAVNLP-----YRSDFG 180 (394)
Q Consensus 111 ~~l~~~l~~l~~g~~VLDvGCG~G~~l~~--~~~~~v~gvD~S~~~l~~a~~---~~i~~~~~D~~~lp-----~~~~~f 180 (394)
..+...+. +.++..+||.+||.|..+.. ..+..|+|+|.++.+++.|++ .++.++++++.+++ ...+.+
T Consensus 12 ~e~le~L~-~~~gg~~VD~T~G~GGHS~~il~~~g~VigiD~Dp~Ai~~A~~L~~~rv~lv~~~f~~l~~~L~~~g~~~v 90 (285)
T 1wg8_A 12 QEALDLLA-VRPGGVYVDATLGGAGHARGILERGGRVIGLDQDPEAVARAKGLHLPGLTVVQGNFRHLKRHLAALGVERV 90 (285)
T ss_dssp HHHHHHHT-CCTTCEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHTCCTTEEEEESCGGGHHHHHHHTTCSCE
T ss_pred HHHHHhhC-CCCCCEEEEeCCCCcHHHHHHHHCCCEEEEEeCCHHHHHHHHhhccCCEEEEECCcchHHHHHHHcCCCCc
Confidence 34445553 56788999999999997532 126799999999999999987 24677777777653 112457
Q ss_pred cEEEe
Q 016157 181 DAAIS 185 (394)
Q Consensus 181 D~Vi~ 185 (394)
|.|++
T Consensus 91 DgIL~ 95 (285)
T 1wg8_A 91 DGILA 95 (285)
T ss_dssp EEEEE
T ss_pred CEEEe
Confidence 77775
|
| >3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus} | Back alignment and structure |
|---|
Probab=96.53 E-value=0.0011 Score=62.64 Aligned_cols=99 Identities=15% Similarity=0.173 Sum_probs=67.4
Q ss_pred CCCCCEEEEEcC------ccCccc-c-cCCC-cEEEEEeCCHHHHHHHHHcCCeEEEeecCCCCCCCCCccEEEehhh--
Q 016157 120 LPSGSLVLDAGC------GNGKYL-G-LNPD-CFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAV-- 188 (394)
Q Consensus 120 l~~g~~VLDvGC------G~G~~l-~-~~~~-~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~lp~~~~~fD~Vi~~~v-- 188 (394)
+|.|.+|||+|+ .+|.+. + ..+. ..++++|+.+-... .+ .++++|+..+.. .+.||+|+|-..
T Consensus 107 vp~gmrVLDLGA~s~kg~APGS~VLr~~~p~g~~VVavDL~~~~sd----a~-~~IqGD~~~~~~-~~k~DLVISDMAPN 180 (344)
T 3r24_A 107 VPYNMRVIHFGAGSDKGVAPGTAVLRQWLPTGTLLVDSDLNDFVSD----AD-STLIGDCATVHT-ANKWDLIISDMYDP 180 (344)
T ss_dssp CCTTCEEEEESCCCTTSBCHHHHHHHHHSCTTCEEEEEESSCCBCS----SS-EEEESCGGGEEE-SSCEEEEEECCCCT
T ss_pred ecCCCEEEeCCCCCCCCCCCcHHHHHHhCCCCcEEEEeeCcccccC----CC-eEEEcccccccc-CCCCCEEEecCCCC
Confidence 578999999996 566542 2 2554 69999999764311 12 459999876433 478999999321
Q ss_pred -hhhcC-----ChhHHHHHHHHHHhccccCcEEEEEEcCccc
Q 016157 189 -LHHLS-----TESRRKKAIEELVRVVKKGSLVLITVWAVEQ 224 (394)
Q Consensus 189 -l~hl~-----~~~~~~~~L~ei~r~LkpGG~lli~~~~~~~ 224 (394)
--+.. ...-.+.++.-+.++|+|||.|++-+|..+.
T Consensus 181 tTG~~D~d~~Rs~~L~ElALdfA~~~LkpGGsFvVKVFQGsg 222 (344)
T 3r24_A 181 RTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHSW 222 (344)
T ss_dssp TSCSSCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSSC
T ss_pred cCCccccchhHHHHHHHHHHHHHHHhCcCCCEEEEEEecCCC
Confidence 11111 1112567778888899999999999987654
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=96.15 E-value=0.005 Score=58.45 Aligned_cols=41 Identities=24% Similarity=0.324 Sum_probs=35.5
Q ss_pred CCCCEEEEEcCccCcccc--cCCCcEEEEEeCCHHHHHHHHHc
Q 016157 121 PSGSLVLDAGCGNGKYLG--LNPDCFFVGCDISPSLIKICVDR 161 (394)
Q Consensus 121 ~~g~~VLDvGCG~G~~l~--~~~~~~v~gvD~S~~~l~~a~~~ 161 (394)
.+|..|||++||+|..+. ...+..++|+|+++.+++.|+++
T Consensus 234 ~~~~~vlD~f~GsGt~~~~a~~~g~~~~g~e~~~~~~~~a~~r 276 (297)
T 2zig_A 234 FVGDVVLDPFAGTGTTLIAAARWGRRALGVELVPRYAQLAKER 276 (297)
T ss_dssp CTTCEEEETTCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred CCCCEEEECCCCCCHHHHHHHHcCCeEEEEeCCHHHHHHHHHH
Confidence 678899999999999753 24567999999999999999887
|
| >1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A | Back alignment and structure |
|---|
Probab=94.79 E-value=0.083 Score=51.02 Aligned_cols=104 Identities=14% Similarity=0.185 Sum_probs=73.0
Q ss_pred HHHHcCCCCCCEEEEEcCccCcccc----cCCCcEEEEEeCCHHHHHHHHHc----------------------------
Q 016157 114 ATFLNSLPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR---------------------------- 161 (394)
Q Consensus 114 ~~~l~~l~~g~~VLDvGCG~G~~l~----~~~~~~v~gvD~S~~~l~~a~~~---------------------------- 161 (394)
..++.. .+...|+.+|||.....- ..++..++-+|. +.+++.-++.
T Consensus 90 ~~fl~~-~~~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~-P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~ 167 (334)
T 1rjd_A 90 LEFLVA-NEKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDY-NESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQG 167 (334)
T ss_dssp HHHHHH-CSSEEEEEETCTTCCTHHHHHHHCTTEEEEEEEC-HHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECS
T ss_pred HHHHHH-CCCcEEEEeCCCCccHHHHhcCcCCCCEEEECCC-HHHHHHHHHHhhhccchhhhcccccccccccccccCCC
Confidence 344543 455799999999987532 136778999998 6655443321
Q ss_pred CCeEEEeecCCCCC---------CCCCccEEEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 016157 162 GHEVLVADAVNLPY---------RSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 221 (394)
Q Consensus 162 ~i~~~~~D~~~lp~---------~~~~fD~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~ 221 (394)
+..++.+|+.+..+ ..+...++++-.++.+++... ..++|+.+.+.+ |+|.+++....
T Consensus 168 ~~~~v~~DL~d~~w~~~ll~~~~d~~~Ptl~iaEgvL~YL~~~~-~~~ll~~ia~~~-~~~~~v~~e~i 234 (334)
T 1rjd_A 168 RYKLAACDLNDITETTRLLDVCTKREIPTIVISECLLCYMHNNE-SQLLINTIMSKF-SHGLWISYDPI 234 (334)
T ss_dssp SEEEEECCTTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHH-HHHHHHHHHHHC-SSEEEEEEEEC
T ss_pred ceEEEecCCCCcHHHHHHHHhcCCCCCCEEEEEcchhhCCCHHH-HHHHHHHHHhhC-CCcEEEEEecc
Confidence 35678889887421 235678899999999998655 788899888877 78888766543
|
| >2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=94.77 E-value=0.037 Score=54.43 Aligned_cols=97 Identities=23% Similarity=0.254 Sum_probs=66.9
Q ss_pred cCCCCCCEEEEEcCcc-Ccccc---cCCCc-EEEEEeCCHHHHHHHHHcCCeEEEeecCCCCC---------CCCCccEE
Q 016157 118 NSLPSGSLVLDAGCGN-GKYLG---LNPDC-FFVGCDISPSLIKICVDRGHEVLVADAVNLPY---------RSDFGDAA 183 (394)
Q Consensus 118 ~~l~~g~~VLDvGCG~-G~~l~---~~~~~-~v~gvD~S~~~l~~a~~~~i~~~~~D~~~lp~---------~~~~fD~V 183 (394)
..+.+|.+||-+|+|. |.++. ...+. .|+++|.++..++.+++.+.+++ |..+..+ ....+|+|
T Consensus 181 ~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~i--~~~~~~~~~~~~~~~~~g~g~Dvv 258 (398)
T 2dph_A 181 AGVKPGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERLKLLSDAGFETI--DLRNSAPLRDQIDQILGKPEVDCG 258 (398)
T ss_dssp TTCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHTTTCEEE--ETTSSSCHHHHHHHHHSSSCEEEE
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCcEE--cCCCcchHHHHHHHHhCCCCCCEE
Confidence 4678999999999875 55431 23456 89999999999999998887643 3322211 12269999
Q ss_pred Eehhhhh---------hcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 016157 184 ISIAVLH---------HLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (394)
Q Consensus 184 i~~~vl~---------hl~~~~~~~~~L~ei~r~LkpGG~lli~~~ 220 (394)
+-...-. |+. +...+..+.++|+|||++++...
T Consensus 259 id~~g~~~~~~~~~~~~~~----~~~~~~~~~~~l~~gG~iv~~G~ 300 (398)
T 2dph_A 259 VDAVGFEAHGLGDEANTET----PNGALNSLFDVVRAGGAIGIPGI 300 (398)
T ss_dssp EECSCTTCBCSGGGTTSBC----TTHHHHHHHHHEEEEEEEECCSC
T ss_pred EECCCCccccccccccccc----cHHHHHHHHHHHhcCCEEEEecc
Confidence 8765432 111 23468889999999999887643
|
| >1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=94.11 E-value=0.12 Score=50.54 Aligned_cols=97 Identities=18% Similarity=0.182 Sum_probs=66.7
Q ss_pred cCCCCCCEEEEEcCcc-Ccccc---cCCCc-EEEEEeCCHHHHHHHHHcCCeEEEeecCCCC---------CCCCCccEE
Q 016157 118 NSLPSGSLVLDAGCGN-GKYLG---LNPDC-FFVGCDISPSLIKICVDRGHEVLVADAVNLP---------YRSDFGDAA 183 (394)
Q Consensus 118 ~~l~~g~~VLDvGCG~-G~~l~---~~~~~-~v~gvD~S~~~l~~a~~~~i~~~~~D~~~lp---------~~~~~fD~V 183 (394)
..+.+|.+||-+|+|. |.++. ...+. .|+++|.+++-++.+++.|.+.+ |..+-. .....+|+|
T Consensus 181 ~~~~~g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~~~a~~lGa~~i--~~~~~~~~~~~v~~~t~g~g~Dvv 258 (398)
T 1kol_A 181 AGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGFEIA--DLSLDTPLHEQIAALLGEPEVDCA 258 (398)
T ss_dssp TTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCEEE--ETTSSSCHHHHHHHHHSSSCEEEE
T ss_pred cCCCCCCEEEEECCcHHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHcCCcEE--ccCCcchHHHHHHHHhCCCCCCEE
Confidence 4678999999999864 44321 23456 79999999999999998888643 332211 012368999
Q ss_pred Eehhhhh---------hcCChhHHHHHHHHHHhccccCcEEEEEE
Q 016157 184 ISIAVLH---------HLSTESRRKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 184 i~~~vl~---------hl~~~~~~~~~L~ei~r~LkpGG~lli~~ 219 (394)
+-...-. |.+. +...+..+.++|++||++++..
T Consensus 259 id~~G~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~G~iv~~G 300 (398)
T 1kol_A 259 VDAVGFEARGHGHEGAKHEA---PATVLNSLMQVTRVAGKIGIPG 300 (398)
T ss_dssp EECCCTTCBCSSTTGGGSBC---TTHHHHHHHHHEEEEEEEEECS
T ss_pred EECCCCcccccccccccccc---hHHHHHHHHHHHhcCCEEEEec
Confidence 8765421 2222 3457889999999999987764
|
| >1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=93.91 E-value=0.056 Score=52.49 Aligned_cols=92 Identities=11% Similarity=0.070 Sum_probs=63.7
Q ss_pred CCCCCCEEEEEcCcc-Ccccc---cCCCc-EEEEEeCCHHHHHHHHHcCCeEEEeecCCCC-------CCCCCccEEEeh
Q 016157 119 SLPSGSLVLDAGCGN-GKYLG---LNPDC-FFVGCDISPSLIKICVDRGHEVLVADAVNLP-------YRSDFGDAAISI 186 (394)
Q Consensus 119 ~l~~g~~VLDvGCG~-G~~l~---~~~~~-~v~gvD~S~~~l~~a~~~~i~~~~~D~~~lp-------~~~~~fD~Vi~~ 186 (394)
.+.+|.+||-+|+|. |.++. ...+. .|+++|.++.-++.+++.+.+.+. |..+.. ...+.+|+|+..
T Consensus 187 ~~~~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi-~~~~~~~~~~~~~~~~gg~D~vid~ 265 (371)
T 1f8f_A 187 KVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATHVI-NSKTQDPVAAIKEITDGGVNFALES 265 (371)
T ss_dssp CCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCSEEE-ETTTSCHHHHHHHHTTSCEEEEEEC
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCCEEe-cCCccCHHHHHHHhcCCCCcEEEEC
Confidence 577899999999875 54421 23455 799999999999999888765432 222111 112368999865
Q ss_pred hhhhhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 016157 187 AVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (394)
Q Consensus 187 ~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~ 220 (394)
.. . ...+..+.++|+|||++++...
T Consensus 266 ~g-----~----~~~~~~~~~~l~~~G~iv~~G~ 290 (371)
T 1f8f_A 266 TG-----S----PEILKQGVDALGILGKIAVVGA 290 (371)
T ss_dssp SC-----C----HHHHHHHHHTEEEEEEEEECCC
T ss_pred CC-----C----HHHHHHHHHHHhcCCEEEEeCC
Confidence 43 1 3567889999999999887643
|
| >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 | Back alignment and structure |
|---|
Probab=93.76 E-value=0.068 Score=46.75 Aligned_cols=90 Identities=17% Similarity=0.068 Sum_probs=61.4
Q ss_pred CCCCCCEEEEEcC--ccCcccc---cCCCcEEEEEeCCHHHHHHHHHcCCeEEEeecCCCC--------CCCCCccEEEe
Q 016157 119 SLPSGSLVLDAGC--GNGKYLG---LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLP--------YRSDFGDAAIS 185 (394)
Q Consensus 119 ~l~~g~~VLDvGC--G~G~~l~---~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~lp--------~~~~~fD~Vi~ 185 (394)
.+.+|.+||.+|+ |.|..+. ...+.+|+++|.+++.++.+++.+.... .|..+.. .....+|+++.
T Consensus 35 ~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~~~g~~~~-~d~~~~~~~~~~~~~~~~~~~D~vi~ 113 (198)
T 1pqw_A 35 RLSPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSRLGVEYV-GDSRSVDFADEILELTDGYGVDVVLN 113 (198)
T ss_dssp CCCTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHTTCCSEE-EETTCSTHHHHHHHHTTTCCEEEEEE
T ss_pred CCCCCCEEEEeeCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCEE-eeCCcHHHHHHHHHHhCCCCCeEEEE
Confidence 4678999999995 3454322 2346799999999998888877665432 3443221 11236899987
Q ss_pred hhhhhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 016157 186 IAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 186 ~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~ 219 (394)
+.. . ..+..+.++|+|||++++..
T Consensus 114 ~~g-----~-----~~~~~~~~~l~~~G~~v~~g 137 (198)
T 1pqw_A 114 SLA-----G-----EAIQRGVQILAPGGRFIELG 137 (198)
T ss_dssp CCC-----T-----HHHHHHHHTEEEEEEEEECS
T ss_pred CCc-----h-----HHHHHHHHHhccCCEEEEEc
Confidence 643 1 35788899999999988764
|
| >3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=93.61 E-value=0.038 Score=53.19 Aligned_cols=90 Identities=13% Similarity=0.103 Sum_probs=64.3
Q ss_pred CCCCCCEEEEEcCcc-Cccc---ccCCCcEEEEEeCCHHHHHHHHHcCCeEEEeecCCCCCCCCCccEEEehhhhhhcCC
Q 016157 119 SLPSGSLVLDAGCGN-GKYL---GLNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLST 194 (394)
Q Consensus 119 ~l~~g~~VLDvGCG~-G~~l---~~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~lp~~~~~fD~Vi~~~vl~hl~~ 194 (394)
.+.+|.+||-+|+|. |.++ ....+.+|+++|.+++-++.+++.+.+.+..+...+ . ..+|+|+-... .
T Consensus 173 ~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~v~~~~~~~--~-~~~D~vid~~g-----~ 244 (348)
T 3two_A 173 KVTKGTKVGVAGFGGLGSMAVKYAVAMGAEVSVFARNEHKKQDALSMGVKHFYTDPKQC--K-EELDFIISTIP-----T 244 (348)
T ss_dssp TCCTTCEEEEESCSHHHHHHHHHHHHTTCEEEEECSSSTTHHHHHHTTCSEEESSGGGC--C-SCEEEEEECCC-----S
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHhcCCCeecCCHHHH--h-cCCCEEEECCC-----c
Confidence 678899999999864 4432 124567999999999999999988765544333222 2 27899986533 1
Q ss_pred hhHHHHHHHHHHhccccCcEEEEEEc
Q 016157 195 ESRRKKAIEELVRVVKKGSLVLITVW 220 (394)
Q Consensus 195 ~~~~~~~L~ei~r~LkpGG~lli~~~ 220 (394)
...+..+.++|+|||++++...
T Consensus 245 ----~~~~~~~~~~l~~~G~iv~~G~ 266 (348)
T 3two_A 245 ----HYDLKDYLKLLTYNGDLALVGL 266 (348)
T ss_dssp ----CCCHHHHHTTEEEEEEEEECCC
T ss_pred ----HHHHHHHHHHHhcCCEEEEECC
Confidence 1256778899999999998754
|
| >1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=93.10 E-value=0.21 Score=47.89 Aligned_cols=93 Identities=19% Similarity=0.265 Sum_probs=63.6
Q ss_pred cCCCCCCEEEEEcCcc-Cccc---ccCCCcEEEEEeCCHHHHHHHHHcCCeEEEeecCC-CCC--------C---CCCcc
Q 016157 118 NSLPSGSLVLDAGCGN-GKYL---GLNPDCFFVGCDISPSLIKICVDRGHEVLVADAVN-LPY--------R---SDFGD 181 (394)
Q Consensus 118 ~~l~~g~~VLDvGCG~-G~~l---~~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~-lp~--------~---~~~fD 181 (394)
..+.+|.+||-+|+|. |.++ ....+..|+++|.+++-++.+++.+.+.+. |..+ ..+ . ...+|
T Consensus 164 ~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~~-~~~~~~~~~~~i~~~~~~~~g~g~D 242 (352)
T 1e3j_A 164 AGVQLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNCGADVTL-VVDPAKEEESSIIERIRSAIGDLPN 242 (352)
T ss_dssp HTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSEEE-ECCTTTSCHHHHHHHHHHHSSSCCS
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhCCCEEE-cCcccccHHHHHHHHhccccCCCCC
Confidence 3578899999999864 4332 124567899999999999999888765322 2221 111 1 24689
Q ss_pred EEEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 016157 182 AAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (394)
Q Consensus 182 ~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~ 220 (394)
+|+.... . ...+....++|+|||++++...
T Consensus 243 ~vid~~g-----~----~~~~~~~~~~l~~~G~iv~~G~ 272 (352)
T 1e3j_A 243 VTIDCSG-----N----EKCITIGINITRTGGTLMLVGM 272 (352)
T ss_dssp EEEECSC-----C----HHHHHHHHHHSCTTCEEEECSC
T ss_pred EEEECCC-----C----HHHHHHHHHHHhcCCEEEEEec
Confidence 9987543 1 3467888899999999887643
|
| >1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A | Back alignment and structure |
|---|
Probab=92.85 E-value=0.095 Score=50.57 Aligned_cols=93 Identities=14% Similarity=0.173 Sum_probs=63.6
Q ss_pred cCCCCCCEEEEEcCcc-Ccccc---cCCCc-EEEEEeCCHHHHHHHHHcCCeEEEeecC-----CC----C-CCCCCccE
Q 016157 118 NSLPSGSLVLDAGCGN-GKYLG---LNPDC-FFVGCDISPSLIKICVDRGHEVLVADAV-----NL----P-YRSDFGDA 182 (394)
Q Consensus 118 ~~l~~g~~VLDvGCG~-G~~l~---~~~~~-~v~gvD~S~~~l~~a~~~~i~~~~~D~~-----~l----p-~~~~~fD~ 182 (394)
..+.+|.+||-+|+|. |.++. ...+. .|+++|.++.-++.+++.+.+.+. |.. ++ . .....+|+
T Consensus 167 ~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi-~~~~~~~~~~~~~i~~~~~~g~D~ 245 (356)
T 1pl8_A 167 GGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVL-QISKESPQEIARKVEGQLGCKPEV 245 (356)
T ss_dssp HTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEE-ECSSCCHHHHHHHHHHHHTSCCSE
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEE-cCcccccchHHHHHHHHhCCCCCE
Confidence 3578899999999874 44321 23566 899999999999999988764322 222 10 0 00146899
Q ss_pred EEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 016157 183 AISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (394)
Q Consensus 183 Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~ 220 (394)
|+.... . ...+....++|+|||++++...
T Consensus 246 vid~~g-----~----~~~~~~~~~~l~~~G~iv~~G~ 274 (356)
T 1pl8_A 246 TIECTG-----A----EASIQAGIYATRSGGTLVLVGL 274 (356)
T ss_dssp EEECSC-----C----HHHHHHHHHHSCTTCEEEECSC
T ss_pred EEECCC-----C----hHHHHHHHHHhcCCCEEEEEec
Confidence 987543 2 3467888899999999987643
|
| >3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* | Back alignment and structure |
|---|
Probab=92.84 E-value=0.1 Score=49.84 Aligned_cols=92 Identities=20% Similarity=0.258 Sum_probs=64.1
Q ss_pred CCCCCCEEEEEcCcc-Cccc---ccCCCcEEEEEeCCHHHHHHHHHcCCeEEEeecCCCCC------CCCCccEEEehhh
Q 016157 119 SLPSGSLVLDAGCGN-GKYL---GLNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPY------RSDFGDAAISIAV 188 (394)
Q Consensus 119 ~l~~g~~VLDvGCG~-G~~l---~~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~lp~------~~~~fD~Vi~~~v 188 (394)
.+.+|.+||-+|+|. |.++ ....+.+|+++|.+++-++.+++.+.+.+. |..+..+ ..+.+|+|+....
T Consensus 163 ~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~i-~~~~~~~~~~~~~~~g~~d~vid~~g 241 (340)
T 3s2e_A 163 DTRPGQWVVISGIGGLGHVAVQYARAMGLRVAAVDIDDAKLNLARRLGAEVAV-NARDTDPAAWLQKEIGGAHGVLVTAV 241 (340)
T ss_dssp TCCTTSEEEEECCSTTHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSEEE-ETTTSCHHHHHHHHHSSEEEEEESSC
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCCEEE-eCCCcCHHHHHHHhCCCCCEEEEeCC
Confidence 577899999999864 4432 124577999999999999999988765432 2222111 0136888876532
Q ss_pred hhhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 016157 189 LHHLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (394)
Q Consensus 189 l~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~ 220 (394)
. ...++.+.++|+|||++++...
T Consensus 242 -----~----~~~~~~~~~~l~~~G~iv~~G~ 264 (340)
T 3s2e_A 242 -----S----PKAFSQAIGMVRRGGTIALNGL 264 (340)
T ss_dssp -----C----HHHHHHHHHHEEEEEEEEECSC
T ss_pred -----C----HHHHHHHHHHhccCCEEEEeCC
Confidence 1 4578888999999999987643
|
| >3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A* | Back alignment and structure |
|---|
Probab=92.81 E-value=0.1 Score=49.92 Aligned_cols=94 Identities=14% Similarity=0.167 Sum_probs=65.1
Q ss_pred cCCCCCCEEEEEcCcc-Cccc----ccCCCcEEEEEeCCHHHHHHHHHcCCeEEEeecCCCC-----C-CCCCccEEEeh
Q 016157 118 NSLPSGSLVLDAGCGN-GKYL----GLNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLP-----Y-RSDFGDAAISI 186 (394)
Q Consensus 118 ~~l~~g~~VLDvGCG~-G~~l----~~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~lp-----~-~~~~fD~Vi~~ 186 (394)
..+.+|.+||=+|+|. |.++ +...+..|+++|.+++-++.+++.+.+.+...-.++. . ....+|+|+-.
T Consensus 167 ~~~~~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~v~~~t~g~g~d~v~d~ 246 (345)
T 3jv7_A 167 PLLGPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALAREVGADAAVKSGAGAADAIRELTGGQGATAVFDF 246 (345)
T ss_dssp GGCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHTTCSEEEECSTTHHHHHHHHHGGGCEEEEEES
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCCEEEcCCCcHHHHHHHHhCCCCCeEEEEC
Confidence 3578899999999864 4332 2234679999999999999999887654332211110 0 12368998875
Q ss_pred hhhhhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 016157 187 AVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (394)
Q Consensus 187 ~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~ 220 (394)
.. . ...+..+.++|+|||++++...
T Consensus 247 ~G-----~----~~~~~~~~~~l~~~G~iv~~G~ 271 (345)
T 3jv7_A 247 VG-----A----QSTIDTAQQVVAVDGHISVVGI 271 (345)
T ss_dssp SC-----C----HHHHHHHHHHEEEEEEEEECSC
T ss_pred CC-----C----HHHHHHHHHHHhcCCEEEEECC
Confidence 32 2 3578889999999999988753
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=92.75 E-value=0.057 Score=49.96 Aligned_cols=42 Identities=24% Similarity=0.297 Sum_probs=35.8
Q ss_pred CCCCCEEEEEcCccCcccc--cCCCcEEEEEeCCHHHHHHHHHc
Q 016157 120 LPSGSLVLDAGCGNGKYLG--LNPDCFFVGCDISPSLIKICVDR 161 (394)
Q Consensus 120 l~~g~~VLDvGCG~G~~l~--~~~~~~v~gvD~S~~~l~~a~~~ 161 (394)
..+|..|||..||+|..+. ...+..++|+|+++..++.|+++
T Consensus 210 ~~~~~~vlD~f~GsGtt~~~a~~~gr~~ig~e~~~~~~~~~~~r 253 (260)
T 1g60_A 210 SNPNDLVLDCFMGSGTTAIVAKKLGRNFIGCDMNAEYVNQANFV 253 (260)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHHHHHcCCeEEEEeCCHHHHHHHHHH
Confidence 3688999999999999753 24567999999999999999876
|
| >4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* | Back alignment and structure |
|---|
Probab=92.68 E-value=0.16 Score=49.39 Aligned_cols=93 Identities=18% Similarity=0.147 Sum_probs=64.8
Q ss_pred cCCCCCCEEEEEcCcc-Cccc---ccCCCc-EEEEEeCCHHHHHHHHHcCCeEEEeecCCCC----------CCCCCccE
Q 016157 118 NSLPSGSLVLDAGCGN-GKYL---GLNPDC-FFVGCDISPSLIKICVDRGHEVLVADAVNLP----------YRSDFGDA 182 (394)
Q Consensus 118 ~~l~~g~~VLDvGCG~-G~~l---~~~~~~-~v~gvD~S~~~l~~a~~~~i~~~~~D~~~lp----------~~~~~fD~ 182 (394)
..+.+|.+||=+|+|. |.++ ....++ .|+++|.++.-++.+++.|..... |..... ...+.+|+
T Consensus 178 ~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi-~~~~~~~~~~i~~~~~~~~gg~Dv 256 (370)
T 4ej6_A 178 SGIKAGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEEVGATATV-DPSAGDVVEAIAGPVGLVPGGVDV 256 (370)
T ss_dssp HTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTCSEEE-CTTSSCHHHHHHSTTSSSTTCEEE
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCCEEE-CCCCcCHHHHHHhhhhccCCCCCE
Confidence 4578899999999864 3332 124566 899999999999999988765432 221111 22347999
Q ss_pred EEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 016157 183 AISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (394)
Q Consensus 183 Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~ 220 (394)
|+-... . ...+..+.++|++||++++...
T Consensus 257 vid~~G-----~----~~~~~~~~~~l~~~G~vv~~G~ 285 (370)
T 4ej6_A 257 VIECAG-----V----AETVKQSTRLAKAGGTVVILGV 285 (370)
T ss_dssp EEECSC-----C----HHHHHHHHHHEEEEEEEEECSC
T ss_pred EEECCC-----C----HHHHHHHHHHhccCCEEEEEec
Confidence 987532 1 3578889999999999988643
|
| >1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A* | Back alignment and structure |
|---|
Probab=92.34 E-value=0.16 Score=48.23 Aligned_cols=90 Identities=17% Similarity=0.103 Sum_probs=62.4
Q ss_pred CCCCCCEEEEEcCc--cCcccc---cCCCcEEEEEeCCHHHHHHHHHcCCeEEEeecCC-CC-------CCCCCccEEEe
Q 016157 119 SLPSGSLVLDAGCG--NGKYLG---LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVN-LP-------YRSDFGDAAIS 185 (394)
Q Consensus 119 ~l~~g~~VLDvGCG--~G~~l~---~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~-lp-------~~~~~fD~Vi~ 185 (394)
.+.+|.+||-.|++ .|..+. ...+.+|+++|.+++.++.+++.+.... .|..+ -. ...+.+|+++.
T Consensus 142 ~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~~~g~~~~-~d~~~~~~~~~~~~~~~~~~~d~vi~ 220 (333)
T 1v3u_A 142 GVKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQIGFDAA-FNYKTVNSLEEALKKASPDGYDCYFD 220 (333)
T ss_dssp CCCSSCEEEEESTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEE-EETTSCSCHHHHHHHHCTTCEEEEEE
T ss_pred CCCCCCEEEEecCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcCCcEE-EecCCHHHHHHHHHHHhCCCCeEEEE
Confidence 56789999999984 444321 2457799999999998888876665432 34433 11 11246899987
Q ss_pred hhhhhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 016157 186 IAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 186 ~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~ 219 (394)
+..- ..+..+.++|+|||++++..
T Consensus 221 ~~g~----------~~~~~~~~~l~~~G~~v~~g 244 (333)
T 1v3u_A 221 NVGG----------EFLNTVLSQMKDFGKIAICG 244 (333)
T ss_dssp SSCH----------HHHHHHHTTEEEEEEEEECC
T ss_pred CCCh----------HHHHHHHHHHhcCCEEEEEe
Confidence 7642 24778889999999988764
|
| >1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A | Back alignment and structure |
|---|
Probab=92.32 E-value=0.22 Score=47.54 Aligned_cols=92 Identities=17% Similarity=0.226 Sum_probs=63.4
Q ss_pred CCCCCCEEEEEcCcc-Cccc---ccCCCcEEEEEeCCHHHHHHHHHcCCeEEEeecCCCCCC------CCCccEEEehhh
Q 016157 119 SLPSGSLVLDAGCGN-GKYL---GLNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYR------SDFGDAAISIAV 188 (394)
Q Consensus 119 ~l~~g~~VLDvGCG~-G~~l---~~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~lp~~------~~~fD~Vi~~~v 188 (394)
.+.+|.+||-+|+|. |..+ ....+.+|+++|.++.-++.+++.+...+ .|..+..+. .+.+|+|+....
T Consensus 161 ~~~~g~~VlV~GaG~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~-~d~~~~~~~~~~~~~~~~~d~vid~~g 239 (339)
T 1rjw_A 161 GAKPGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKELGADLV-VNPLKEDAAKFMKEKVGGVHAAVVTAV 239 (339)
T ss_dssp TCCTTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCSEE-ECTTTSCHHHHHHHHHSSEEEEEESSC
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHCCCCEE-ecCCCccHHHHHHHHhCCCCEEEECCC
Confidence 578899999999953 3322 12456799999999999999988776533 233321110 036899887543
Q ss_pred hhhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 016157 189 LHHLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (394)
Q Consensus 189 l~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~ 220 (394)
. ...++.+.++|++||++++...
T Consensus 240 -----~----~~~~~~~~~~l~~~G~~v~~g~ 262 (339)
T 1rjw_A 240 -----S----KPAFQSAYNSIRRGGACVLVGL 262 (339)
T ss_dssp -----C----HHHHHHHHHHEEEEEEEEECCC
T ss_pred -----C----HHHHHHHHHHhhcCCEEEEecc
Confidence 1 3567888999999999887643
|
| >1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A* | Back alignment and structure |
|---|
Probab=92.01 E-value=0.22 Score=47.72 Aligned_cols=93 Identities=16% Similarity=0.206 Sum_probs=64.0
Q ss_pred cCCCCCCEEEEEcCccCc--ccc---cCC-CcEEEEEeCCHHHHHHHHHcCCeEEEeecCCCC-------CCC-CCccEE
Q 016157 118 NSLPSGSLVLDAGCGNGK--YLG---LNP-DCFFVGCDISPSLIKICVDRGHEVLVADAVNLP-------YRS-DFGDAA 183 (394)
Q Consensus 118 ~~l~~g~~VLDvGCG~G~--~l~---~~~-~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~lp-------~~~-~~fD~V 183 (394)
..+.+|.+||-+|+|.|. .+. ... +.+|+++|.+++.++.+++.+...+. |..+.. ... +.+|++
T Consensus 166 ~~~~~g~~vlV~Gagg~iG~~~~~~a~~~~Ga~Vi~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~d~v 244 (347)
T 1jvb_A 166 ASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGADYVI-NASMQDPLAEIRRITESKGVDAV 244 (347)
T ss_dssp TTCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTCSEEE-ETTTSCHHHHHHHHTTTSCEEEE
T ss_pred cCCCCCCEEEEECCCccHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCCEEe-cCCCccHHHHHHHHhcCCCceEE
Confidence 457889999999998553 221 133 78999999999999988877654322 332211 111 478999
Q ss_pred EehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 016157 184 ISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (394)
Q Consensus 184 i~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~ 220 (394)
+.... . ...++.+.++|+|+|++++...
T Consensus 245 i~~~g-----~----~~~~~~~~~~l~~~G~iv~~g~ 272 (347)
T 1jvb_A 245 IDLNN-----S----EKTLSVYPKALAKQGKYVMVGL 272 (347)
T ss_dssp EESCC-----C----HHHHTTGGGGEEEEEEEEECCS
T ss_pred EECCC-----C----HHHHHHHHHHHhcCCEEEEECC
Confidence 87653 1 3467788899999999887643
|
| >1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=91.79 E-value=0.15 Score=49.53 Aligned_cols=53 Identities=19% Similarity=0.088 Sum_probs=43.1
Q ss_pred CCCEEEEEcCccCccccc----CCCcEEEEEeCCHHHHHHHHHc----CCeEEEeecCCCC
Q 016157 122 SGSLVLDAGCGNGKYLGL----NPDCFFVGCDISPSLIKICVDR----GHEVLVADAVNLP 174 (394)
Q Consensus 122 ~g~~VLDvGCG~G~~l~~----~~~~~v~gvD~S~~~l~~a~~~----~i~~~~~D~~~lp 174 (394)
++..|||||.|.|.++.. ....+++++++.+.++...++. +++++.+|+..+.
T Consensus 58 ~~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~~~~~l~ii~~D~l~~~ 118 (353)
T 1i4w_A 58 EELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFEGSPLQILKRDPYDWS 118 (353)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTTTSSCEEECSCTTCHH
T ss_pred CCCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhccCCCEEEEECCccchh
Confidence 458999999999998653 2245899999999999888763 6899999997653
|
| >2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.72 E-value=0.16 Score=48.64 Aligned_cols=92 Identities=20% Similarity=0.181 Sum_probs=63.6
Q ss_pred CCCCCCEEEEEcCc--cCcccc---cCCCcEEEEEeCCHHHHHHHHHcCCeEEEeecCC-CCC-------CCCCccEEEe
Q 016157 119 SLPSGSLVLDAGCG--NGKYLG---LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVN-LPY-------RSDFGDAAIS 185 (394)
Q Consensus 119 ~l~~g~~VLDvGCG--~G~~l~---~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~-lp~-------~~~~fD~Vi~ 185 (394)
.+.+|.+||-+|++ .|..+. ...+.+|+++|.++..++.+++.+.... .|..+ -.+ ..+.+|+++.
T Consensus 166 ~~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~V~~~~~~~~~~~~~~~~g~~~~-~d~~~~~~~~~~~~~~~~~~~D~vi~ 244 (347)
T 2hcy_A 166 NLMAGHWVAISGAAGGLGSLAVQYAKAMGYRVLGIDGGEGKEELFRSIGGEVF-IDFTKEKDIVGAVLKATDGGAHGVIN 244 (347)
T ss_dssp TCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSTTHHHHHHHTTCCEE-EETTTCSCHHHHHHHHHTSCEEEEEE
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCCCcEEEEcCCHHHHHHHHHcCCceE-EecCccHhHHHHHHHHhCCCCCEEEE
Confidence 56789999999983 454431 2456799999999988888887766533 24431 110 1126899987
Q ss_pred hhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 016157 186 IAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (394)
Q Consensus 186 ~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~ 220 (394)
... ....++.+.+.|++||++++...
T Consensus 245 ~~g---------~~~~~~~~~~~l~~~G~iv~~g~ 270 (347)
T 2hcy_A 245 VSV---------SEAAIEASTRYVRANGTTVLVGM 270 (347)
T ss_dssp CSS---------CHHHHHHHTTSEEEEEEEEECCC
T ss_pred CCC---------cHHHHHHHHHHHhcCCEEEEEeC
Confidence 653 13578889999999999887643
|
| >2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A* | Back alignment and structure |
|---|
Probab=91.66 E-value=0.85 Score=43.36 Aligned_cols=96 Identities=13% Similarity=0.129 Sum_probs=69.9
Q ss_pred CEEEEEcCccCccc-ccC-C-CcEEEEEeCCHHHHHHHHHc----------CCeEEEeecCCCC---------CCCCCcc
Q 016157 124 SLVLDAGCGNGKYL-GLN-P-DCFFVGCDISPSLIKICVDR----------GHEVLVADAVNLP---------YRSDFGD 181 (394)
Q Consensus 124 ~~VLDvGCG~G~~l-~~~-~-~~~v~gvD~S~~~l~~a~~~----------~i~~~~~D~~~lp---------~~~~~fD 181 (394)
..|+++|||-=... +.. + +..++=+|. +..++..++. +..++.+|+.+ . +..+..=
T Consensus 104 ~QvV~LGaGlDTra~Rl~~~~~~~v~evD~-P~vi~~k~~lL~~~~~~~~~~~~~v~~Dl~d-~~~~~l~~~g~d~~~Pt 181 (310)
T 2uyo_A 104 RQFVILASGLDSRAYRLDWPTGTTVYEIDQ-PKVLAYKSTTLAEHGVTPTADRREVPIDLRQ-DWPPALRSAGFDPSART 181 (310)
T ss_dssp CEEEEETCTTCCHHHHSCCCTTCEEEEEEC-HHHHHHHHHHHHHTTCCCSSEEEEEECCTTS-CHHHHHHHTTCCTTSCE
T ss_pred CeEEEeCCCCCchhhhccCCCCcEEEEcCC-HHHHHHHHHHHHhcCCCCCCCeEEEecchHh-hHHHHHHhccCCCCCCE
Confidence 47999999976542 222 3 478999994 7777665443 34678889876 2 2223456
Q ss_pred EEEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCc
Q 016157 182 AAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAV 222 (394)
Q Consensus 182 ~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~ 222 (394)
++++-+++++++..+ ...+|+.+...+.||+.+++.....
T Consensus 182 ~~i~Egvl~Yl~~~~-~~~ll~~l~~~~~~gs~l~~d~~~~ 221 (310)
T 2uyo_A 182 AWLAEGLLMYLPATA-QDGLFTEIGGLSAVGSRIAVETSPL 221 (310)
T ss_dssp EEEECSCGGGSCHHH-HHHHHHHHHHTCCTTCEEEEECCCT
T ss_pred EEEEechHhhCCHHH-HHHHHHHHHHhCCCCeEEEEEecCC
Confidence 788889999998754 7899999999999999988886554
|
| >3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A | Back alignment and structure |
|---|
Probab=91.51 E-value=0.18 Score=48.38 Aligned_cols=93 Identities=14% Similarity=0.113 Sum_probs=64.3
Q ss_pred cCCCCCCEEEEEcCcc-Cccc---ccCCCc-EEEEEeCCHHHHHHHHHcCCeEEEeecCCCC--------CCCCCccEEE
Q 016157 118 NSLPSGSLVLDAGCGN-GKYL---GLNPDC-FFVGCDISPSLIKICVDRGHEVLVADAVNLP--------YRSDFGDAAI 184 (394)
Q Consensus 118 ~~l~~g~~VLDvGCG~-G~~l---~~~~~~-~v~gvD~S~~~l~~a~~~~i~~~~~D~~~lp--------~~~~~fD~Vi 184 (394)
..+.+|.+||=+|+|. |.++ ....+. .|+++|.++.-++.+++.+...+. |..+.. .....+|+|+
T Consensus 162 ~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi-~~~~~~~~~~v~~~t~g~g~D~v~ 240 (352)
T 3fpc_A 162 ANIKLGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALEYGATDII-NYKNGDIVEQILKATDGKGVDKVV 240 (352)
T ss_dssp TTCCTTCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHHHHHHHHHHTCCEEE-CGGGSCHHHHHHHHTTTCCEEEEE
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCceEE-cCCCcCHHHHHHHHcCCCCCCEEE
Confidence 4578899999999864 3332 225566 899999999999999988765432 221111 1123699998
Q ss_pred ehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 016157 185 SIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (394)
Q Consensus 185 ~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~ 220 (394)
-... . ...+..+.++|+|||++++...
T Consensus 241 d~~g-----~----~~~~~~~~~~l~~~G~~v~~G~ 267 (352)
T 3fpc_A 241 IAGG-----D----VHTFAQAVKMIKPGSDIGNVNY 267 (352)
T ss_dssp ECSS-----C----TTHHHHHHHHEEEEEEEEECCC
T ss_pred ECCC-----C----hHHHHHHHHHHhcCCEEEEecc
Confidence 7432 1 2467888999999999987754
|
| >1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=91.29 E-value=0.1 Score=50.76 Aligned_cols=91 Identities=13% Similarity=0.112 Sum_probs=61.8
Q ss_pred CCCCCCEEEEEcCcc-Cccc---ccCCCcEEEEEeCCHHHHHHHHHcCCeEEEeecCCC----CCCCCCccEEEehhhhh
Q 016157 119 SLPSGSLVLDAGCGN-GKYL---GLNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNL----PYRSDFGDAAISIAVLH 190 (394)
Q Consensus 119 ~l~~g~~VLDvGCG~-G~~l---~~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~l----p~~~~~fD~Vi~~~vl~ 190 (394)
.+.+|.+||-+|+|. |.++ ....++.|+++|.+++-++.+++.+...+. |..+. ... +.+|+|+....-
T Consensus 191 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~Vi~~~~~~~~~~~a~~lGa~~vi-~~~~~~~~~~~~-~g~Dvvid~~g~- 267 (369)
T 1uuf_A 191 QAGPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKALGADEVV-NSRNADEMAAHL-KSFDFILNTVAA- 267 (369)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTCSEEE-ETTCHHHHHTTT-TCEEEEEECCSS-
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCcEEe-ccccHHHHHHhh-cCCCEEEECCCC-
Confidence 578899999999874 4432 124577899999999999999887754332 22110 011 468999875431
Q ss_pred hcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 016157 191 HLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (394)
Q Consensus 191 hl~~~~~~~~~L~ei~r~LkpGG~lli~~~ 220 (394)
...++.+.++|+|+|++++...
T Consensus 268 --------~~~~~~~~~~l~~~G~iv~~G~ 289 (369)
T 1uuf_A 268 --------PHNLDDFTTLLKRDGTMTLVGA 289 (369)
T ss_dssp --------CCCHHHHHTTEEEEEEEEECCC
T ss_pred --------HHHHHHHHHHhccCCEEEEecc
Confidence 1246677899999999887643
|
| >1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=90.85 E-value=0.28 Score=47.49 Aligned_cols=92 Identities=14% Similarity=0.205 Sum_probs=63.0
Q ss_pred CCCCCCEEEEEcCcc-Cccc---ccCCCc-EEEEEeCCHHHHHHHHHcCCeEEEeecCC----CC-----CCCCCccEEE
Q 016157 119 SLPSGSLVLDAGCGN-GKYL---GLNPDC-FFVGCDISPSLIKICVDRGHEVLVADAVN----LP-----YRSDFGDAAI 184 (394)
Q Consensus 119 ~l~~g~~VLDvGCG~-G~~l---~~~~~~-~v~gvD~S~~~l~~a~~~~i~~~~~D~~~----lp-----~~~~~fD~Vi 184 (394)
.+.+|.+||-+|+|. |.++ ....+. .|+++|.+++-++.+++.+...+. |..+ +. ...+.+|+|+
T Consensus 189 ~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi-~~~~~~~~~~~~~~~~~~~g~D~vi 267 (374)
T 1cdo_A 189 KVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGATDFV-NPNDHSEPISQVLSKMTNGGVDFSL 267 (374)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCCEEE-CGGGCSSCHHHHHHHHHTSCBSEEE
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhCCceEE-eccccchhHHHHHHHHhCCCCCEEE
Confidence 567899999999763 3332 123566 899999999999999988765432 2221 10 1123689998
Q ss_pred ehhhhhhcCChhHHHHHHHHHHhccccC-cEEEEEEc
Q 016157 185 SIAVLHHLSTESRRKKAIEELVRVVKKG-SLVLITVW 220 (394)
Q Consensus 185 ~~~vl~hl~~~~~~~~~L~ei~r~LkpG-G~lli~~~ 220 (394)
.... . ...+..+.++|+|| |++++...
T Consensus 268 d~~g-----~----~~~~~~~~~~l~~~~G~iv~~G~ 295 (374)
T 1cdo_A 268 ECVG-----N----VGVMRNALESCLKGWGVSVLVGW 295 (374)
T ss_dssp ECSC-----C----HHHHHHHHHTBCTTTCEEEECSC
T ss_pred ECCC-----C----HHHHHHHHHHhhcCCcEEEEEcC
Confidence 6542 1 35678889999999 99887643
|
| >3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=90.81 E-value=0.11 Score=49.13 Aligned_cols=87 Identities=16% Similarity=0.100 Sum_probs=59.3
Q ss_pred CCCCCCEEEEEcCcc-Cccc---ccCCCcEEEEEeCCHHHHHHHHHcCCeEEEeecCCCCCCCCCccEEEehhhhhhcCC
Q 016157 119 SLPSGSLVLDAGCGN-GKYL---GLNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLST 194 (394)
Q Consensus 119 ~l~~g~~VLDvGCG~-G~~l---~~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~lp~~~~~fD~Vi~~~vl~hl~~ 194 (394)
.+++|.+||=+|+|. |.++ ....+++|++++ +++-++.+++.+.+.+..|...+ .+.+|+|+-...-
T Consensus 139 ~~~~g~~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~-~~~~~~~~~~lGa~~v~~d~~~v---~~g~Dvv~d~~g~----- 209 (315)
T 3goh_A 139 PLTKQREVLIVGFGAVNNLLTQMLNNAGYVVDLVS-ASLSQALAAKRGVRHLYREPSQV---TQKYFAIFDAVNS----- 209 (315)
T ss_dssp CCCSCCEEEEECCSHHHHHHHHHHHHHTCEEEEEC-SSCCHHHHHHHTEEEEESSGGGC---CSCEEEEECC--------
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEE-ChhhHHHHHHcCCCEEEcCHHHh---CCCccEEEECCCc-----
Confidence 567899999999953 4332 124567999999 99989999888876554342222 5679999875431
Q ss_pred hhHHHHHHHHHHhccccCcEEEEEE
Q 016157 195 ESRRKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 195 ~~~~~~~L~ei~r~LkpGG~lli~~ 219 (394)
..+....++|+|||++++..
T Consensus 210 -----~~~~~~~~~l~~~G~~v~~g 229 (315)
T 3goh_A 210 -----QNAAALVPSLKANGHIICIQ 229 (315)
T ss_dssp ---------TTGGGEEEEEEEEEEC
T ss_pred -----hhHHHHHHHhcCCCEEEEEe
Confidence 12356789999999998874
|
| >2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ... | Back alignment and structure |
|---|
Probab=90.51 E-value=0.33 Score=46.96 Aligned_cols=92 Identities=13% Similarity=0.149 Sum_probs=62.8
Q ss_pred CCCCCCEEEEEcCcc-Cccc---ccCCCc-EEEEEeCCHHHHHHHHHcCCeEEEeecCC----CC-----CCCCCccEEE
Q 016157 119 SLPSGSLVLDAGCGN-GKYL---GLNPDC-FFVGCDISPSLIKICVDRGHEVLVADAVN----LP-----YRSDFGDAAI 184 (394)
Q Consensus 119 ~l~~g~~VLDvGCG~-G~~l---~~~~~~-~v~gvD~S~~~l~~a~~~~i~~~~~D~~~----lp-----~~~~~fD~Vi 184 (394)
.+.+|.+||-+|+|. |.++ ....+. .|+++|.+++-++.+++.+...+. |..+ +. ...+.+|+|+
T Consensus 188 ~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi-~~~~~~~~~~~~~~~~~~~g~D~vi 266 (374)
T 2jhf_A 188 KVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECV-NPQDYKKPIQEVLTEMSNGGVDFSF 266 (374)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEE-CGGGCSSCHHHHHHHHTTSCBSEEE
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCceEe-cccccchhHHHHHHHHhCCCCcEEE
Confidence 577899999999764 4332 123566 899999999999999888765332 2221 10 1123689998
Q ss_pred ehhhhhhcCChhHHHHHHHHHHhccccC-cEEEEEEc
Q 016157 185 SIAVLHHLSTESRRKKAIEELVRVVKKG-SLVLITVW 220 (394)
Q Consensus 185 ~~~vl~hl~~~~~~~~~L~ei~r~LkpG-G~lli~~~ 220 (394)
.... . ...+..+.++|++| |++++...
T Consensus 267 d~~g-----~----~~~~~~~~~~l~~~~G~iv~~G~ 294 (374)
T 2jhf_A 267 EVIG-----R----LDTMVTALSCCQEAYGVSVIVGV 294 (374)
T ss_dssp ECSC-----C----HHHHHHHHHHBCTTTCEEEECSC
T ss_pred ECCC-----C----HHHHHHHHHHhhcCCcEEEEecc
Confidence 6542 1 35678889999999 99887643
|
| >3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} | Back alignment and structure |
|---|
Probab=90.50 E-value=0.16 Score=49.09 Aligned_cols=94 Identities=12% Similarity=0.074 Sum_probs=64.0
Q ss_pred cCCCCCCEEEEEcCcc-Cccc---ccCCCcEEEEEeCCHHHHHHHHHcCCeEEEeec-CCCC------CCCCCccEEEeh
Q 016157 118 NSLPSGSLVLDAGCGN-GKYL---GLNPDCFFVGCDISPSLIKICVDRGHEVLVADA-VNLP------YRSDFGDAAISI 186 (394)
Q Consensus 118 ~~l~~g~~VLDvGCG~-G~~l---~~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~-~~lp------~~~~~fD~Vi~~ 186 (394)
..+.+|.+||=+|+|. |.++ ....+++|+++|.++.-++.+++.+...+...- .++. .....+|+|+..
T Consensus 185 ~~~~~g~~VlV~G~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~v~~~~~g~g~D~vid~ 264 (363)
T 3uog_A 185 GHLRAGDRVVVQGTGGVALFGLQIAKATGAEVIVTSSSREKLDRAFALGADHGINRLEEDWVERVYALTGDRGADHILEI 264 (363)
T ss_dssp TCCCTTCEEEEESSBHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHHTTCCEEEEEEE
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCchhHHHHHHcCCCEEEcCCcccHHHHHHHHhCCCCceEEEEC
Confidence 3577899999999764 3332 124577999999999999999888765433211 1110 112369999876
Q ss_pred hhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 016157 187 AVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 221 (394)
Q Consensus 187 ~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~ 221 (394)
.. . ..+..+.++|+|||++++....
T Consensus 265 ~g-----~-----~~~~~~~~~l~~~G~iv~~G~~ 289 (363)
T 3uog_A 265 AG-----G-----AGLGQSLKAVAPDGRISVIGVL 289 (363)
T ss_dssp TT-----S-----SCHHHHHHHEEEEEEEEEECCC
T ss_pred CC-----h-----HHHHHHHHHhhcCCEEEEEecC
Confidence 54 1 2466778899999999987543
|
| >3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A* | Back alignment and structure |
|---|
Probab=89.98 E-value=0.28 Score=46.78 Aligned_cols=94 Identities=17% Similarity=0.203 Sum_probs=56.1
Q ss_pred CEEEEEcCccCcccc--------cCCCc--EEEEEeCC------------HHHHHHHHHc---------CCeEEEeecCC
Q 016157 124 SLVLDAGCGNGKYLG--------LNPDC--FFVGCDIS------------PSLIKICVDR---------GHEVLVADAVN 172 (394)
Q Consensus 124 ~~VLDvGCG~G~~l~--------~~~~~--~v~gvD~S------------~~~l~~a~~~---------~i~~~~~D~~~ 172 (394)
-+|||+|=|+|..+. ..+.. +++.+|.. ..+.+..... .+.+..+|+.+
T Consensus 98 ~~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek~pl~~~~~~~~~~~~l~~~l~~~~p~~~~~~v~L~l~~GDa~~ 177 (308)
T 3vyw_A 98 IRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEKELLKEFPILPEPYREIHEFLLERVPEYEGERLSLKVLLGDARK 177 (308)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEESSCCSCCCCCCTTSHHHHHHHHHHCSEEECSSEEEEEEESCHHH
T ss_pred cEEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecHHHHHhhHhchHhHHHHHHHHHHhCccccCCcEEEEEEechHHH
Confidence 479999999998521 14443 56777741 1122222221 24567788755
Q ss_pred -CC-CCCCCccEEEehhhhhhcCChhH-HHHHHHHHHhccccCcEEEEE
Q 016157 173 -LP-YRSDFGDAAISIAVLHHLSTESR-RKKAIEELVRVVKKGSLVLIT 218 (394)
Q Consensus 173 -lp-~~~~~fD~Vi~~~vl~hl~~~~~-~~~~L~ei~r~LkpGG~lli~ 218 (394)
++ +....||+++.-+. .--.+++. -..+++.|+++++|||+|.-+
T Consensus 178 ~l~~l~~~~~Da~flDgF-sP~kNPeLWs~e~f~~l~~~~~pgg~laTY 225 (308)
T 3vyw_A 178 RIKEVENFKADAVFHDAF-SPYKNPELWTLDFLSLIKERIDEKGYWVSY 225 (308)
T ss_dssp HGGGCCSCCEEEEEECCS-CTTTSGGGGSHHHHHHHHTTEEEEEEEEES
T ss_pred HHhhhcccceeEEEeCCC-CcccCcccCCHHHHHHHHHHhCCCcEEEEE
Confidence 33 33457999988542 11111110 258999999999999987643
|
| >1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* | Back alignment and structure |
|---|
Probab=89.93 E-value=0.33 Score=46.93 Aligned_cols=92 Identities=12% Similarity=0.104 Sum_probs=62.9
Q ss_pred CCCCCCEEEEEcCcc-Cccc---ccCCCc-EEEEEeCCHHHHHHHHHcCCeEEEeecCC----CC-----CCCCCccEEE
Q 016157 119 SLPSGSLVLDAGCGN-GKYL---GLNPDC-FFVGCDISPSLIKICVDRGHEVLVADAVN----LP-----YRSDFGDAAI 184 (394)
Q Consensus 119 ~l~~g~~VLDvGCG~-G~~l---~~~~~~-~v~gvD~S~~~l~~a~~~~i~~~~~D~~~----lp-----~~~~~fD~Vi 184 (394)
.+.+|.+||-+|+|. |.++ ....+. .|+++|.++.-++.+++.+.+.+. |..+ +. ...+.+|+|+
T Consensus 188 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi-~~~~~~~~~~~~i~~~t~gg~Dvvi 266 (373)
T 1p0f_A 188 KVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGATECL-NPKDYDKPIYEVICEKTNGGVDYAV 266 (373)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTCSEEE-CGGGCSSCHHHHHHHHTTSCBSEEE
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCcEEE-ecccccchHHHHHHHHhCCCCCEEE
Confidence 577899999999864 3332 123456 899999999999999988765332 2221 10 1123689998
Q ss_pred ehhhhhhcCChhHHHHHHHHHHhccccC-cEEEEEEc
Q 016157 185 SIAVLHHLSTESRRKKAIEELVRVVKKG-SLVLITVW 220 (394)
Q Consensus 185 ~~~vl~hl~~~~~~~~~L~ei~r~LkpG-G~lli~~~ 220 (394)
-... . ...+..+.++|+++ |++++...
T Consensus 267 d~~g-----~----~~~~~~~~~~l~~~~G~iv~~G~ 294 (373)
T 1p0f_A 267 ECAG-----R----IETMMNALQSTYCGSGVTVVLGL 294 (373)
T ss_dssp ECSC-----C----HHHHHHHHHTBCTTTCEEEECCC
T ss_pred ECCC-----C----HHHHHHHHHHHhcCCCEEEEEcc
Confidence 7542 1 35678889999999 99887653
|
| >2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=89.91 E-value=0.14 Score=49.03 Aligned_cols=91 Identities=14% Similarity=0.202 Sum_probs=61.9
Q ss_pred CCCCCCEEEEEcCcc-Cccc----cc-CCCcEEEEEeCCHHHHHHHHHcCCeEEEeecCC---C--CCC-CCCccEEEeh
Q 016157 119 SLPSGSLVLDAGCGN-GKYL----GL-NPDCFFVGCDISPSLIKICVDRGHEVLVADAVN---L--PYR-SDFGDAAISI 186 (394)
Q Consensus 119 ~l~~g~~VLDvGCG~-G~~l----~~-~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~---l--p~~-~~~fD~Vi~~ 186 (394)
.+ +|.+||-+|+|. |.++ +. .++.+|+++|.+++-++.+++.+.+.+. |..+ . ... ...+|+|+..
T Consensus 168 ~~-~g~~VlV~GaG~vG~~aiqlak~~~~Ga~Vi~~~~~~~~~~~~~~lGa~~vi-~~~~~~~~~~~~~~g~g~D~vid~ 245 (344)
T 2h6e_A 168 KF-AEPVVIVNGIGGLAVYTIQILKALMKNITIVGISRSKKHRDFALELGADYVS-EMKDAESLINKLTDGLGASIAIDL 245 (344)
T ss_dssp TC-SSCEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHTCSEEE-CHHHHHHHHHHHHTTCCEEEEEES
T ss_pred CC-CCCEEEEECCCHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHHhCCCEEe-ccccchHHHHHhhcCCCccEEEEC
Confidence 56 899999999863 3332 11 2378999999999999999887754332 1111 0 011 2368999876
Q ss_pred hhhhhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 016157 187 AVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (394)
Q Consensus 187 ~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~ 220 (394)
.. . ...++.+.++|+|||++++...
T Consensus 246 ~g-----~----~~~~~~~~~~l~~~G~iv~~g~ 270 (344)
T 2h6e_A 246 VG-----T----EETTYNLGKLLAQEGAIILVGM 270 (344)
T ss_dssp SC-----C----HHHHHHHHHHEEEEEEEEECCC
T ss_pred CC-----C----hHHHHHHHHHhhcCCEEEEeCC
Confidence 43 2 3467888999999999887643
|
| >2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A* | Back alignment and structure |
|---|
Probab=89.64 E-value=0.37 Score=45.95 Aligned_cols=90 Identities=13% Similarity=0.108 Sum_probs=61.7
Q ss_pred CCCCCCEEEEEcC--ccCcccc---cCCCcEEEEEeCCHHHHHHHH-HcCCeEEEeecCCC-CC-------CCCCccEEE
Q 016157 119 SLPSGSLVLDAGC--GNGKYLG---LNPDCFFVGCDISPSLIKICV-DRGHEVLVADAVNL-PY-------RSDFGDAAI 184 (394)
Q Consensus 119 ~l~~g~~VLDvGC--G~G~~l~---~~~~~~v~gvD~S~~~l~~a~-~~~i~~~~~D~~~l-p~-------~~~~fD~Vi 184 (394)
.+.+|.+||-+|+ |.|..+. ...+++|+++|.++..++.++ +.+.... .|..+. .+ ..+.+|+++
T Consensus 152 ~~~~g~~vlI~Ga~g~iG~~~~~~a~~~G~~V~~~~~~~~~~~~~~~~~g~~~~-~d~~~~~~~~~~~~~~~~~~~d~vi 230 (345)
T 2j3h_A 152 SPKEGETVYVSAASGAVGQLVGQLAKMMGCYVVGSAGSKEKVDLLKTKFGFDDA-FNYKEESDLTAALKRCFPNGIDIYF 230 (345)
T ss_dssp CCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTSCCSEE-EETTSCSCSHHHHHHHCTTCEEEEE
T ss_pred CCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCCceE-EecCCHHHHHHHHHHHhCCCCcEEE
Confidence 5678999999998 3454421 245679999999999999887 4565432 243321 11 124689998
Q ss_pred ehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 016157 185 SIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 185 ~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~ 219 (394)
.+.. - ..+....++|++||++++..
T Consensus 231 ~~~g---------~-~~~~~~~~~l~~~G~~v~~G 255 (345)
T 2j3h_A 231 ENVG---------G-KMLDAVLVNMNMHGRIAVCG 255 (345)
T ss_dssp ESSC---------H-HHHHHHHTTEEEEEEEEECC
T ss_pred ECCC---------H-HHHHHHHHHHhcCCEEEEEc
Confidence 7653 1 36788889999999988764
|
| >1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* | Back alignment and structure |
|---|
Probab=89.49 E-value=0.41 Score=46.33 Aligned_cols=92 Identities=15% Similarity=0.087 Sum_probs=62.9
Q ss_pred CCCCCCEEEEEcCcc-Cccc---ccCCCc-EEEEEeCCHHHHHHHHHcCCeEEEeecCC--CC-------CCCCCccEEE
Q 016157 119 SLPSGSLVLDAGCGN-GKYL---GLNPDC-FFVGCDISPSLIKICVDRGHEVLVADAVN--LP-------YRSDFGDAAI 184 (394)
Q Consensus 119 ~l~~g~~VLDvGCG~-G~~l---~~~~~~-~v~gvD~S~~~l~~a~~~~i~~~~~D~~~--lp-------~~~~~fD~Vi 184 (394)
.+.+|.+||-+|+|. |.++ ....+. .|+++|.+++-++.+++.+...+. |..+ -. ...+.+|+|+
T Consensus 192 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi-~~~~~~~~~~~~v~~~~~~g~Dvvi 270 (376)
T 1e3i_A 192 KVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATDCL-NPRELDKPVQDVITELTAGGVDYSL 270 (376)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEE-CGGGCSSCHHHHHHHHHTSCBSEEE
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCcEEE-ccccccchHHHHHHHHhCCCccEEE
Confidence 567899999999763 3332 123466 899999999999999888765432 2221 01 1123689998
Q ss_pred ehhhhhhcCChhHHHHHHHHHHhccccC-cEEEEEEc
Q 016157 185 SIAVLHHLSTESRRKKAIEELVRVVKKG-SLVLITVW 220 (394)
Q Consensus 185 ~~~vl~hl~~~~~~~~~L~ei~r~LkpG-G~lli~~~ 220 (394)
-... . ...+..+.++|++| |++++...
T Consensus 271 d~~G-----~----~~~~~~~~~~l~~~~G~iv~~G~ 298 (376)
T 1e3i_A 271 DCAG-----T----AQTLKAAVDCTVLGWGSCTVVGA 298 (376)
T ss_dssp ESSC-----C----HHHHHHHHHTBCTTTCEEEECCC
T ss_pred ECCC-----C----HHHHHHHHHHhhcCCCEEEEECC
Confidence 6542 1 35678889999999 99887644
|
| >2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A* | Back alignment and structure |
|---|
Probab=89.22 E-value=0.38 Score=46.46 Aligned_cols=92 Identities=15% Similarity=0.182 Sum_probs=62.5
Q ss_pred CCCCCCEEEEEcCcc-Cccc---ccCCCc-EEEEEeCCHHHHHHHHHcCCeEEEeecCC----CC-----CCCCCccEEE
Q 016157 119 SLPSGSLVLDAGCGN-GKYL---GLNPDC-FFVGCDISPSLIKICVDRGHEVLVADAVN----LP-----YRSDFGDAAI 184 (394)
Q Consensus 119 ~l~~g~~VLDvGCG~-G~~l---~~~~~~-~v~gvD~S~~~l~~a~~~~i~~~~~D~~~----lp-----~~~~~fD~Vi 184 (394)
.+.+|.+||-+|+|. |.++ ....+. .|+++|.+++-++.+++.+...+. |..+ +. ...+.+|+|+
T Consensus 187 ~~~~g~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi-~~~~~~~~~~~~v~~~~~~g~D~vi 265 (373)
T 2fzw_A 187 KLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATECI-NPQDFSKPIQEVLIEMTDGGVDYSF 265 (373)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCSEEE-CGGGCSSCHHHHHHHHTTSCBSEEE
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEe-ccccccccHHHHHHHHhCCCCCEEE
Confidence 567899999999763 3332 123456 899999999999999888765332 2221 10 1123689998
Q ss_pred ehhhhhhcCChhHHHHHHHHHHhccccC-cEEEEEEc
Q 016157 185 SIAVLHHLSTESRRKKAIEELVRVVKKG-SLVLITVW 220 (394)
Q Consensus 185 ~~~vl~hl~~~~~~~~~L~ei~r~LkpG-G~lli~~~ 220 (394)
.... . ...+..+.++|+|+ |++++...
T Consensus 266 d~~g-----~----~~~~~~~~~~l~~~~G~iv~~G~ 293 (373)
T 2fzw_A 266 ECIG-----N----VKVMRAALEACHKGWGVSVVVGV 293 (373)
T ss_dssp ECSC-----C----HHHHHHHHHTBCTTTCEEEECSC
T ss_pred ECCC-----c----HHHHHHHHHhhccCCcEEEEEec
Confidence 6543 1 35678889999999 99887643
|
| >1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=89.11 E-value=0.42 Score=45.95 Aligned_cols=90 Identities=16% Similarity=0.141 Sum_probs=62.5
Q ss_pred CCCCCCEEEEEcCc--cCcccc---cCCCcEEEEEeCCHHHHHHHHHcCCeEEEeecCCCCC--------CCCCccEEEe
Q 016157 119 SLPSGSLVLDAGCG--NGKYLG---LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPY--------RSDFGDAAIS 185 (394)
Q Consensus 119 ~l~~g~~VLDvGCG--~G~~l~---~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~lp~--------~~~~fD~Vi~ 185 (394)
.+.+|.+||-.|++ .|..+. ...+++|+++|.+++-++.+++.+.... .|..+..+ ....+|+++.
T Consensus 167 ~~~~g~~vlV~GasggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga~~~-~d~~~~~~~~~~~~~~~~~~~D~vi~ 245 (351)
T 1yb5_A 167 CVKAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQNGAHEV-FNHREVNYIDKIKKYVGEKGIDIIIE 245 (351)
T ss_dssp CCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEE-EETTSTTHHHHHHHHHCTTCEEEEEE
T ss_pred CCCCcCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChhHHHHHHHcCCCEE-EeCCCchHHHHHHHHcCCCCcEEEEE
Confidence 57789999999973 344321 2456799999999999888887765433 23332111 1236899988
Q ss_pred hhhhhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 016157 186 IAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 186 ~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~ 219 (394)
+..- ..+....++|+|||++++..
T Consensus 246 ~~G~----------~~~~~~~~~l~~~G~iv~~g 269 (351)
T 1yb5_A 246 MLAN----------VNLSKDLSLLSHGGRVIVVG 269 (351)
T ss_dssp SCHH----------HHHHHHHHHEEEEEEEEECC
T ss_pred CCCh----------HHHHHHHHhccCCCEEEEEe
Confidence 7542 24667889999999988765
|
| >4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A* | Back alignment and structure |
|---|
Probab=89.09 E-value=0.87 Score=43.27 Aligned_cols=93 Identities=17% Similarity=0.143 Sum_probs=63.4
Q ss_pred cCCCCCCEEEEEcCccCccc-----ccCCCcEEEEEeCCHHHHHHHHHcCCeEEEeecCCCC--------CCCCCccEEE
Q 016157 118 NSLPSGSLVLDAGCGNGKYL-----GLNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLP--------YRSDFGDAAI 184 (394)
Q Consensus 118 ~~l~~g~~VLDvGCG~G~~l-----~~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~lp--------~~~~~fD~Vi 184 (394)
..+.+|.+||=+|+|.+..+ +...+.+|+++|.+++-++.+++.+..... |..+.. .....+|.++
T Consensus 159 ~~~~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~~~r~~~~~~~Ga~~~i-~~~~~~~~~~v~~~t~g~g~d~~~ 237 (348)
T 4eez_A 159 SGVKPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDINQDKLNLAKKIGADVTI-NSGDVNPVDEIKKITGGLGVQSAI 237 (348)
T ss_dssp HTCCTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHHHTTCSEEE-EC-CCCHHHHHHHHTTSSCEEEEE
T ss_pred cCCCCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECcHHHhhhhhhcCCeEEE-eCCCCCHHHHhhhhcCCCCceEEE
Confidence 35788999999999876432 235678999999999999999888654332 221111 1123456665
Q ss_pred ehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 016157 185 SIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (394)
Q Consensus 185 ~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~ 220 (394)
...+ -...+....+.|+++|++++...
T Consensus 238 ~~~~---------~~~~~~~~~~~l~~~G~~v~~g~ 264 (348)
T 4eez_A 238 VCAV---------ARIAFEQAVASLKPMGKMVAVAV 264 (348)
T ss_dssp ECCS---------CHHHHHHHHHTEEEEEEEEECCC
T ss_pred Eecc---------CcchhheeheeecCCceEEEEec
Confidence 5432 24678888999999999887653
|
| >3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=88.96 E-value=0.27 Score=46.91 Aligned_cols=91 Identities=15% Similarity=0.135 Sum_probs=61.8
Q ss_pred CCCCCCEEEEEcCccC--ccc---ccCCCcEEEEEeCCHHHHHHHHHcCCeEEEeecCCCC--------CCCCCccEEEe
Q 016157 119 SLPSGSLVLDAGCGNG--KYL---GLNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLP--------YRSDFGDAAIS 185 (394)
Q Consensus 119 ~l~~g~~VLDvGCG~G--~~l---~~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~lp--------~~~~~fD~Vi~ 185 (394)
.+.+|.+||-+|+|.| ..+ ....+++|+++|.++.-++.+++.+...+. |..+.. .....+|+++.
T Consensus 141 ~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~lga~~~~-~~~~~~~~~~~~~~~~~~g~Dvvid 219 (340)
T 3gms_A 141 NLQRNDVLLVNACGSAIGHLFAQLSQILNFRLIAVTRNNKHTEELLRLGAAYVI-DTSTAPLYETVMELTNGIGADAAID 219 (340)
T ss_dssp CCCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTCSEEE-ETTTSCHHHHHHHHTTTSCEEEEEE
T ss_pred ccCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhCCCcEEE-eCCcccHHHHHHHHhCCCCCcEEEE
Confidence 5788999999999854 332 124567999999999999999888765432 322211 11246999987
Q ss_pred hhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 016157 186 IAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (394)
Q Consensus 186 ~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~ 220 (394)
...-. .+.+..++|+|||++++...
T Consensus 220 ~~g~~----------~~~~~~~~l~~~G~iv~~G~ 244 (340)
T 3gms_A 220 SIGGP----------DGNELAFSLRPNGHFLTIGL 244 (340)
T ss_dssp SSCHH----------HHHHHHHTEEEEEEEEECCC
T ss_pred CCCCh----------hHHHHHHHhcCCCEEEEEee
Confidence 65422 22344589999999988754
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=88.95 E-value=1 Score=36.93 Aligned_cols=91 Identities=19% Similarity=0.190 Sum_probs=62.6
Q ss_pred CEEEEEcCcc-Ccccc---cCCCcEEEEEeCCHHHHHHHHHcCCeEEEeecCCCC----CCCCCccEEEehhhhhhcCCh
Q 016157 124 SLVLDAGCGN-GKYLG---LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLP----YRSDFGDAAISIAVLHHLSTE 195 (394)
Q Consensus 124 ~~VLDvGCG~-G~~l~---~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~lp----~~~~~fD~Vi~~~vl~hl~~~ 195 (394)
.+|+=+|||. |..+. ...+..|+++|.+++.++.+++.++.++.+|..+.. ..-..+|++++.. ++.
T Consensus 8 ~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~~~~~g~~~i~gd~~~~~~l~~a~i~~ad~vi~~~-----~~~ 82 (140)
T 3fwz_A 8 NHALLVGYGRVGSLLGEKLLASDIPLVVIETSRTRVDELRERGVRAVLGNAANEEIMQLAHLECAKWLILTI-----PNG 82 (140)
T ss_dssp SCEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTTCEEEESCTTSHHHHHHTTGGGCSEEEECC-----SCH
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHcCCCEEECCCCCHHHHHhcCcccCCEEEEEC-----CCh
Confidence 5789999975 44322 145779999999999999998889999999987632 1124678887642 222
Q ss_pred hHHHHHHHHHHhccccCcEEEEEEc
Q 016157 196 SRRKKAIEELVRVVKKGSLVLITVW 220 (394)
Q Consensus 196 ~~~~~~L~ei~r~LkpGG~lli~~~ 220 (394)
. ....+-...+.+.|+..++....
T Consensus 83 ~-~n~~~~~~a~~~~~~~~iiar~~ 106 (140)
T 3fwz_A 83 Y-EAGEIVASARAKNPDIEIIARAH 106 (140)
T ss_dssp H-HHHHHHHHHHHHCSSSEEEEEES
T ss_pred H-HHHHHHHHHHHHCCCCeEEEEEC
Confidence 2 22334456677788888776654
|
| >4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A* | Back alignment and structure |
|---|
Probab=88.70 E-value=0.39 Score=45.65 Aligned_cols=92 Identities=13% Similarity=0.067 Sum_probs=63.1
Q ss_pred cCCCCCCEEEEEcCc--cCcccc---cCCCcEEEEEeCCHHHHHHH-HHcCCeEEEeecCCCC-------CCCCCccEEE
Q 016157 118 NSLPSGSLVLDAGCG--NGKYLG---LNPDCFFVGCDISPSLIKIC-VDRGHEVLVADAVNLP-------YRSDFGDAAI 184 (394)
Q Consensus 118 ~~l~~g~~VLDvGCG--~G~~l~---~~~~~~v~gvD~S~~~l~~a-~~~~i~~~~~D~~~lp-------~~~~~fD~Vi 184 (394)
..+.+|.+||-+|++ .|..+. ...+++|+++|.+++-++.+ ++.+...+ .|..+.. ...+.+|+++
T Consensus 145 ~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~d~vi 223 (336)
T 4b7c_A 145 GQPKNGETVVISGAAGAVGSVAGQIARLKGCRVVGIAGGAEKCRFLVEELGFDGA-IDYKNEDLAAGLKRECPKGIDVFF 223 (336)
T ss_dssp TCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCCSEE-EETTTSCHHHHHHHHCTTCEEEEE
T ss_pred cCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCCCEE-EECCCHHHHHHHHHhcCCCceEEE
Confidence 357889999999984 344321 24577999999999999888 66665432 2322211 1124699998
Q ss_pred ehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 016157 185 SIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (394)
Q Consensus 185 ~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~ 220 (394)
.+..- ..+..+.+.|++||++++...
T Consensus 224 ~~~g~----------~~~~~~~~~l~~~G~iv~~G~ 249 (336)
T 4b7c_A 224 DNVGG----------EILDTVLTRIAFKARIVLCGA 249 (336)
T ss_dssp ESSCH----------HHHHHHHTTEEEEEEEEECCC
T ss_pred ECCCc----------chHHHHHHHHhhCCEEEEEee
Confidence 76541 367888899999999887643
|
| >4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=88.69 E-value=0.75 Score=44.39 Aligned_cols=88 Identities=13% Similarity=0.133 Sum_probs=61.1
Q ss_pred CCCEEEEEc-Cc-cCccc----ccCCCcEEEEEeCCHHHHHHHHHcCCeEEEeecCCC-----CCCCCCccEEEehhhhh
Q 016157 122 SGSLVLDAG-CG-NGKYL----GLNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNL-----PYRSDFGDAAISIAVLH 190 (394)
Q Consensus 122 ~g~~VLDvG-CG-~G~~l----~~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~l-----p~~~~~fD~Vi~~~vl~ 190 (394)
+|.+||=+| +| .|.++ +...+.+|+++|.+++-++.+++.+.+.+...-.++ ....+.+|+|+....
T Consensus 171 ~g~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~~~~~~~~~~lGad~vi~~~~~~~~~v~~~~~~g~Dvvid~~g-- 248 (363)
T 4dvj_A 171 AAPAILIVGGAGGVGSIAVQIARQRTDLTVIATASRPETQEWVKSLGAHHVIDHSKPLAAEVAALGLGAPAFVFSTTH-- 248 (363)
T ss_dssp SEEEEEEESTTSHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHTTCSEEECTTSCHHHHHHTTCSCCEEEEEECSC--
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHhcCCCceEEEECCC--
Confidence 788999998 44 34432 223578999999999999999888765443211111 012357999987543
Q ss_pred hcCChhHHHHHHHHHHhccccCcEEEEE
Q 016157 191 HLSTESRRKKAIEELVRVVKKGSLVLIT 218 (394)
Q Consensus 191 hl~~~~~~~~~L~ei~r~LkpGG~lli~ 218 (394)
-...+..+.++|+|||++++.
T Consensus 249 -------~~~~~~~~~~~l~~~G~iv~~ 269 (363)
T 4dvj_A 249 -------TDKHAAEIADLIAPQGRFCLI 269 (363)
T ss_dssp -------HHHHHHHHHHHSCTTCEEEEC
T ss_pred -------chhhHHHHHHHhcCCCEEEEE
Confidence 245788899999999999876
|
| >2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=88.24 E-value=0.3 Score=46.71 Aligned_cols=90 Identities=11% Similarity=0.025 Sum_probs=61.8
Q ss_pred CCCCCCEEEEEcCc--cCcccc---cCCCcEEEEEeCCHHHHHHHHHcCCeEEEeecCCCC--------CCCCCccEEEe
Q 016157 119 SLPSGSLVLDAGCG--NGKYLG---LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLP--------YRSDFGDAAIS 185 (394)
Q Consensus 119 ~l~~g~~VLDvGCG--~G~~l~---~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~lp--------~~~~~fD~Vi~ 185 (394)
.+.+|.+||-+|++ .|..+. ...+.+|+++|.+++.++.+++.+...+ .|..+.. .....+|+++.
T Consensus 163 ~~~~g~~vlV~Gasg~iG~~~~~~a~~~G~~Vi~~~~~~~~~~~~~~~ga~~~-~d~~~~~~~~~~~~~~~~~~~d~vi~ 241 (343)
T 2eih_A 163 GVRPGDDVLVMAAGSGVSVAAIQIAKLFGARVIATAGSEDKLRRAKALGADET-VNYTHPDWPKEVRRLTGGKGADKVVD 241 (343)
T ss_dssp CCCTTCEEEECSTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHTCSEE-EETTSTTHHHHHHHHTTTTCEEEEEE
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcCCCEE-EcCCcccHHHHHHHHhCCCCceEEEE
Confidence 46789999999983 444321 2456799999999999998887765433 2443221 11246899987
Q ss_pred hhhhhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 016157 186 IAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 186 ~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~ 219 (394)
... . ..++.+.++|+++|++++..
T Consensus 242 ~~g-~---------~~~~~~~~~l~~~G~~v~~g 265 (343)
T 2eih_A 242 HTG-A---------LYFEGVIKATANGGRIAIAG 265 (343)
T ss_dssp SSC-S---------SSHHHHHHHEEEEEEEEESS
T ss_pred CCC-H---------HHHHHHHHhhccCCEEEEEe
Confidence 654 1 24567788999999987764
|
| >3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=88.07 E-value=0.51 Score=45.74 Aligned_cols=92 Identities=17% Similarity=0.183 Sum_probs=63.5
Q ss_pred CCCCCCEEEEEcCcc-Cccc---ccCCCc-EEEEEeCCHHHHHHHHHcCCeEEEeecC--CCC-------CCCCCccEEE
Q 016157 119 SLPSGSLVLDAGCGN-GKYL---GLNPDC-FFVGCDISPSLIKICVDRGHEVLVADAV--NLP-------YRSDFGDAAI 184 (394)
Q Consensus 119 ~l~~g~~VLDvGCG~-G~~l---~~~~~~-~v~gvD~S~~~l~~a~~~~i~~~~~D~~--~lp-------~~~~~fD~Vi 184 (394)
.+.+|.+||=+|+|. |.++ ....++ .|+++|.+++-++.+++.+...+. |.. ... ...+.+|+|+
T Consensus 190 ~~~~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi-~~~~~~~~~~~~i~~~~~gg~D~vi 268 (378)
T 3uko_A 190 KVEPGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAKKFGVNEFV-NPKDHDKPIQEVIVDLTDGGVDYSF 268 (378)
T ss_dssp CCCTTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHHHHHTTTCCEEE-CGGGCSSCHHHHHHHHTTSCBSEEE
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCcEEE-ccccCchhHHHHHHHhcCCCCCEEE
Confidence 567899999999863 3332 123455 899999999999999988765432 221 111 1123799998
Q ss_pred ehhhhhhcCChhHHHHHHHHHHhccccC-cEEEEEEc
Q 016157 185 SIAVLHHLSTESRRKKAIEELVRVVKKG-SLVLITVW 220 (394)
Q Consensus 185 ~~~vl~hl~~~~~~~~~L~ei~r~LkpG-G~lli~~~ 220 (394)
-... . ...+..+.++|++| |++++...
T Consensus 269 d~~g-----~----~~~~~~~~~~l~~g~G~iv~~G~ 296 (378)
T 3uko_A 269 ECIG-----N----VSVMRAALECCHKGWGTSVIVGV 296 (378)
T ss_dssp ECSC-----C----HHHHHHHHHTBCTTTCEEEECSC
T ss_pred ECCC-----C----HHHHHHHHHHhhccCCEEEEEcc
Confidence 7543 2 35788899999997 99888754
|
| >2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A* | Back alignment and structure |
|---|
Probab=87.83 E-value=0.68 Score=44.46 Aligned_cols=91 Identities=12% Similarity=0.001 Sum_probs=63.4
Q ss_pred CCCCC------CEEEEEcCcc-Cccc----c-cCCCcE-EEEEeCCHH---HHHHHHHcCCeEEEeecCCCCCC-----C
Q 016157 119 SLPSG------SLVLDAGCGN-GKYL----G-LNPDCF-FVGCDISPS---LIKICVDRGHEVLVADAVNLPYR-----S 177 (394)
Q Consensus 119 ~l~~g------~~VLDvGCG~-G~~l----~-~~~~~~-v~gvD~S~~---~l~~a~~~~i~~~~~D~~~lp~~-----~ 177 (394)
.+.+| .+||=+|+|. |.++ . ...+.. |+++|.+++ -++.+++.+.+.+ |..+-.+. .
T Consensus 163 ~~~~g~~~~~~~~VlV~GaG~vG~~a~iqla~k~~Ga~~Vi~~~~~~~~~~~~~~~~~lGa~~v--~~~~~~~~~i~~~~ 240 (357)
T 2b5w_A 163 YASRSAFDWDPSSAFVLGNGSLGLLTLAMLKVDDKGYENLYCLGRRDRPDPTIDIIEELDATYV--DSRQTPVEDVPDVY 240 (357)
T ss_dssp HHTTTTSCCCCCEEEEECCSHHHHHHHHHHHHCTTCCCEEEEEECCCSSCHHHHHHHHTTCEEE--ETTTSCGGGHHHHS
T ss_pred CCCCCcccCCCCEEEEECCCHHHHHHHHHHHHHHcCCcEEEEEeCCcccHHHHHHHHHcCCccc--CCCccCHHHHHHhC
Confidence 35677 8999999853 4333 1 345665 999999988 8899988887765 54432211 1
Q ss_pred CCccEEEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 016157 178 DFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (394)
Q Consensus 178 ~~fD~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~ 220 (394)
+.+|+|+-... . ...+..+.++|+|||++++...
T Consensus 241 gg~Dvvid~~g-----~----~~~~~~~~~~l~~~G~iv~~g~ 274 (357)
T 2b5w_A 241 EQMDFIYEATG-----F----PKHAIQSVQALAPNGVGALLGV 274 (357)
T ss_dssp CCEEEEEECSC-----C----HHHHHHHHHHEEEEEEEEECCC
T ss_pred CCCCEEEECCC-----C----hHHHHHHHHHHhcCCEEEEEeC
Confidence 36899886532 2 3467888999999999887654
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=87.36 E-value=0.17 Score=47.63 Aligned_cols=59 Identities=19% Similarity=0.226 Sum_probs=39.6
Q ss_pred CCeEEEeecCC-CC-CCCCCccEEEehhhhhhcCC-----------------hhHHHHHHHHHHhccccCcEEEEEEc
Q 016157 162 GHEVLVADAVN-LP-YRSDFGDAAISIAVLHHLST-----------------ESRRKKAIEELVRVVKKGSLVLITVW 220 (394)
Q Consensus 162 ~i~~~~~D~~~-lp-~~~~~fD~Vi~~~vl~hl~~-----------------~~~~~~~L~ei~r~LkpGG~lli~~~ 220 (394)
.+.++++|+.+ ++ +++++||+|++.--.....+ ......+++++.++|||||.+++..-
T Consensus 21 ~~~i~~gD~~~~l~~l~~~s~DlIvtdPPY~~~~~y~~~~~~~~~~~~~~~~l~~l~~~~~~~~rvLk~~G~l~i~~~ 98 (297)
T 2zig_A 21 VHRLHVGDAREVLASFPEASVHLVVTSPPYWTLKRYEDTPGQLGHIEDYEAFLDELDRVWREVFRLLVPGGRLVIVVG 98 (297)
T ss_dssp CEEEEESCHHHHHTTSCTTCEEEEEECCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred CCEEEECcHHHHHhhCCCCceeEEEECCCCCCccccCCChhhhcccccHHHHHHHHHHHHHHHHHHcCCCcEEEEEEC
Confidence 35788898876 33 45688999998532211100 00135678899999999999988764
|
| >2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* | Back alignment and structure |
|---|
Probab=87.36 E-value=0.58 Score=44.73 Aligned_cols=91 Identities=16% Similarity=0.150 Sum_probs=61.7
Q ss_pred CCCCCCEEEEEcCcc-Cccc---ccCCCc-EEEEEeCCHHHHHHHHHcCCeEEEeecCCCCC--------CCCCccEEEe
Q 016157 119 SLPSGSLVLDAGCGN-GKYL---GLNPDC-FFVGCDISPSLIKICVDRGHEVLVADAVNLPY--------RSDFGDAAIS 185 (394)
Q Consensus 119 ~l~~g~~VLDvGCG~-G~~l---~~~~~~-~v~gvD~S~~~l~~a~~~~i~~~~~D~~~lp~--------~~~~fD~Vi~ 185 (394)
.+ +|.+||-+|+|. |.++ ....+. +|+++|.+++-++.+++.+...+. |..+..+ ....+|+|+.
T Consensus 165 ~~-~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~~Ga~~~~-~~~~~~~~~~v~~~~~g~g~D~vid 242 (348)
T 2d8a_A 165 PI-SGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKKVGADYVI-NPFEEDVVKEVMDITDGNGVDVFLE 242 (348)
T ss_dssp CC-TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHHTCSEEE-CTTTSCHHHHHHHHTTTSCEEEEEE
T ss_pred CC-CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEE-CCCCcCHHHHHHHHcCCCCCCEEEE
Confidence 46 889999999953 3332 123566 899999999999999887765332 2222110 1236899987
Q ss_pred hhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 016157 186 IAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (394)
Q Consensus 186 ~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~ 220 (394)
... . ...++.+.++|+++|++++...
T Consensus 243 ~~g-----~----~~~~~~~~~~l~~~G~iv~~g~ 268 (348)
T 2d8a_A 243 FSG-----A----PKALEQGLQAVTPAGRVSLLGL 268 (348)
T ss_dssp CSC-----C----HHHHHHHHHHEEEEEEEEECCC
T ss_pred CCC-----C----HHHHHHHHHHHhcCCEEEEEcc
Confidence 643 1 3567888999999999887643
|
| >3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=87.23 E-value=1.1 Score=43.05 Aligned_cols=94 Identities=19% Similarity=0.183 Sum_probs=62.1
Q ss_pred cCCCCCCEEEEEcCcc-Cccc---ccCCCcE-EEEEeCCHHHHHHHHHcCCeEEEeecC-----CCC------CCCCCcc
Q 016157 118 NSLPSGSLVLDAGCGN-GKYL---GLNPDCF-FVGCDISPSLIKICVDRGHEVLVADAV-----NLP------YRSDFGD 181 (394)
Q Consensus 118 ~~l~~g~~VLDvGCG~-G~~l---~~~~~~~-v~gvD~S~~~l~~a~~~~i~~~~~D~~-----~lp------~~~~~fD 181 (394)
..+.+|.+||=+|+|. |.++ ....+.. |+++|.+++-++.+++..-.++..... ++. .....+|
T Consensus 175 ~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~v~~~t~g~g~D 254 (363)
T 3m6i_A 175 AGVRLGDPVLICGAGPIGLITMLCAKAAGACPLVITDIDEGRLKFAKEICPEVVTHKVERLSAEESAKKIVESFGGIEPA 254 (363)
T ss_dssp HTCCTTCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHHCTTCEEEECCSCCHHHHHHHHHHHTSSCCCS
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhchhcccccccccchHHHHHHHHHHhCCCCCC
Confidence 4578899999999854 3332 1245665 999999999999998763122211111 000 1234689
Q ss_pred EEEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 016157 182 AAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (394)
Q Consensus 182 ~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~ 220 (394)
+|+-... . ...+..+.++|++||++++...
T Consensus 255 vvid~~g-----~----~~~~~~~~~~l~~~G~iv~~G~ 284 (363)
T 3m6i_A 255 VALECTG-----V----ESSIAAAIWAVKFGGKVFVIGV 284 (363)
T ss_dssp EEEECSC-----C----HHHHHHHHHHSCTTCEEEECCC
T ss_pred EEEECCC-----C----hHHHHHHHHHhcCCCEEEEEcc
Confidence 9987543 2 3567888999999999988754
|
| >2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A* | Back alignment and structure |
|---|
Probab=87.16 E-value=0.34 Score=46.75 Aligned_cols=85 Identities=9% Similarity=-0.016 Sum_probs=59.0
Q ss_pred CCEEEEEcCcc-Cccc---ccCCCcEEEEEeCCH---HHHHHHHHcCCeEEEeecCCCCCC------CCCccEEEehhhh
Q 016157 123 GSLVLDAGCGN-GKYL---GLNPDCFFVGCDISP---SLIKICVDRGHEVLVADAVNLPYR------SDFGDAAISIAVL 189 (394)
Q Consensus 123 g~~VLDvGCG~-G~~l---~~~~~~~v~gvD~S~---~~l~~a~~~~i~~~~~D~~~lp~~------~~~fD~Vi~~~vl 189 (394)
|.+||-+|+|. |.++ ....+++|+++|.++ +-++.+++.+.+.+ | .+ .+. .+.+|+|+.....
T Consensus 181 g~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~~~ga~~v--~-~~-~~~~~~~~~~~~~d~vid~~g~ 256 (366)
T 2cdc_A 181 CRKVLVVGTGPIGVLFTLLFRTYGLEVWMANRREPTEVEQTVIEETKTNYY--N-SS-NGYDKLKDSVGKFDVIIDATGA 256 (366)
T ss_dssp TCEEEEESCHHHHHHHHHHHHHHTCEEEEEESSCCCHHHHHHHHHHTCEEE--E-CT-TCSHHHHHHHCCEEEEEECCCC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCccchHHHHHHHHhCCcee--c-hH-HHHHHHHHhCCCCCEEEECCCC
Confidence 89999999842 3222 123466999999998 77788887787765 4 43 321 1468999876531
Q ss_pred hhcCChhHHHHHH-HHHHhccccCcEEEEEEc
Q 016157 190 HHLSTESRRKKAI-EELVRVVKKGSLVLITVW 220 (394)
Q Consensus 190 ~hl~~~~~~~~~L-~ei~r~LkpGG~lli~~~ 220 (394)
...+ +.+.++|++||++++...
T Consensus 257 ---------~~~~~~~~~~~l~~~G~iv~~g~ 279 (366)
T 2cdc_A 257 ---------DVNILGNVIPLLGRNGVLGLFGF 279 (366)
T ss_dssp ---------CTHHHHHHGGGEEEEEEEEECSC
T ss_pred ---------hHHHHHHHHHHHhcCCEEEEEec
Confidence 1245 788999999999887644
|
| >1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A | Back alignment and structure |
|---|
Probab=86.28 E-value=0.14 Score=49.43 Aligned_cols=94 Identities=15% Similarity=0.062 Sum_probs=61.4
Q ss_pred cCCCCCCEEEEEcCcc-Cccc---ccCCCcEEEEEeCCHHHHHHHHHcCCeEEEeecCCC-C----CCCCCccEEEehhh
Q 016157 118 NSLPSGSLVLDAGCGN-GKYL---GLNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNL-P----YRSDFGDAAISIAV 188 (394)
Q Consensus 118 ~~l~~g~~VLDvGCG~-G~~l---~~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~l-p----~~~~~fD~Vi~~~v 188 (394)
..+.+|.+||-+|+|. |.++ ....+.+|+++|.++.-++.+++.+...+. |..+. . .. +.+|+|+....
T Consensus 175 ~~~~~g~~VlV~GaG~vG~~~~qlak~~Ga~Vi~~~~~~~~~~~~~~lGa~~v~-~~~~~~~~~~~~~-~~~D~vid~~g 252 (360)
T 1piw_A 175 NGCGPGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMKMGADHYI-ATLEEGDWGEKYF-DTFDLIVVCAS 252 (360)
T ss_dssp TTCSTTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTCSEEE-EGGGTSCHHHHSC-SCEEEEEECCS
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcCCCEEE-cCcCchHHHHHhh-cCCCEEEECCC
Confidence 3578899999999853 3332 123467899999999989999887765332 22111 1 11 46999987643
Q ss_pred hhhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 016157 189 LHHLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (394)
Q Consensus 189 l~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~ 220 (394)
-. . ...++.+.++|+|||++++...
T Consensus 253 ~~--~-----~~~~~~~~~~l~~~G~iv~~g~ 277 (360)
T 1piw_A 253 SL--T-----DIDFNIMPKAMKVGGRIVSISI 277 (360)
T ss_dssp CS--T-----TCCTTTGGGGEEEEEEEEECCC
T ss_pred CC--c-----HHHHHHHHHHhcCCCEEEEecC
Confidence 20 0 1234566789999999887643
|
| >1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=85.65 E-value=0.7 Score=43.62 Aligned_cols=91 Identities=8% Similarity=-0.021 Sum_probs=61.8
Q ss_pred CCCCCCEEEEEcC--ccCcccc---cCCCcEEEEEeCCHHHHHHHHHcCCeEEEeecCCCC--------CCCCCccEEEe
Q 016157 119 SLPSGSLVLDAGC--GNGKYLG---LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLP--------YRSDFGDAAIS 185 (394)
Q Consensus 119 ~l~~g~~VLDvGC--G~G~~l~---~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~lp--------~~~~~fD~Vi~ 185 (394)
.+.+|.+||-.|+ |.|..+. ...+.+|+++|.+++.++.+++.+.... .|..+.. .....+|+++.
T Consensus 137 ~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~~V~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~D~vi~ 215 (327)
T 1qor_A 137 EIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALKAGAWQV-INYREEDLVERLKEITGGKKVRVVYD 215 (327)
T ss_dssp CCCTTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHTCSEE-EETTTSCHHHHHHHHTTTCCEEEEEE
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCEE-EECCCccHHHHHHHHhCCCCceEEEE
Confidence 5678999999994 3444321 2346799999999998888887765433 2333211 11236899987
Q ss_pred hhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 016157 186 IAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (394)
Q Consensus 186 ~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~ 220 (394)
+.. ...++.+.++|++||++++...
T Consensus 216 ~~g----------~~~~~~~~~~l~~~G~iv~~g~ 240 (327)
T 1qor_A 216 SVG----------RDTWERSLDCLQRRGLMVSFGN 240 (327)
T ss_dssp CSC----------GGGHHHHHHTEEEEEEEEECCC
T ss_pred CCc----------hHHHHHHHHHhcCCCEEEEEec
Confidence 754 1346778899999999887643
|
| >4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=85.19 E-value=0.59 Score=44.64 Aligned_cols=92 Identities=13% Similarity=0.108 Sum_probs=61.4
Q ss_pred CCCCCCEEEEEcCc--cCccc---ccCCCcEEEEEeCCHHHHHHHHHcCCeEEEeecCCCC------CCCCCccEEEehh
Q 016157 119 SLPSGSLVLDAGCG--NGKYL---GLNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLP------YRSDFGDAAISIA 187 (394)
Q Consensus 119 ~l~~g~~VLDvGCG--~G~~l---~~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~lp------~~~~~fD~Vi~~~ 187 (394)
.+.+|.+||=+|++ .|..+ ....+++|++++.+++-++.+++.+...+...-.++. .....+|+|+...
T Consensus 156 ~~~~g~~VlV~Gasg~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga~~v~~~~~~~~~~v~~~~~~~g~Dvvid~~ 235 (342)
T 4eye_A 156 QLRAGETVLVLGAAGGIGTAAIQIAKGMGAKVIAVVNRTAATEFVKSVGADIVLPLEEGWAKAVREATGGAGVDMVVDPI 235 (342)
T ss_dssp CCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTCSEEEESSTTHHHHHHHHTTTSCEEEEEESC
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCcEEecCchhHHHHHHHHhCCCCceEEEECC
Confidence 56789999999983 34432 1245779999999999999998887654321112211 1123699998765
Q ss_pred hhhhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 016157 188 VLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (394)
Q Consensus 188 vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~ 220 (394)
.- ..+..+.++|++||++++...
T Consensus 236 g~----------~~~~~~~~~l~~~G~iv~~G~ 258 (342)
T 4eye_A 236 GG----------PAFDDAVRTLASEGRLLVVGF 258 (342)
T ss_dssp C------------CHHHHHHTEEEEEEEEEC--
T ss_pred ch----------hHHHHHHHhhcCCCEEEEEEc
Confidence 42 246778899999999988753
|
| >1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP} | Back alignment and structure |
|---|
Probab=85.08 E-value=0.89 Score=43.07 Aligned_cols=91 Identities=8% Similarity=0.034 Sum_probs=61.8
Q ss_pred CCCCCCEEEEEcCc--cCcccc---cCCCcEEEEEeCCHHHHHHHHHcCCeEEEeecCCCCC--------CCCCccEEEe
Q 016157 119 SLPSGSLVLDAGCG--NGKYLG---LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPY--------RSDFGDAAIS 185 (394)
Q Consensus 119 ~l~~g~~VLDvGCG--~G~~l~---~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~lp~--------~~~~fD~Vi~ 185 (394)
.+.+|.+||-.|++ .|..+. ...+.+|+++|.+++.++.+++.+.... .|..+..+ ....+|+++.
T Consensus 142 ~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~~Vi~~~~~~~~~~~~~~~g~~~~-~d~~~~~~~~~i~~~~~~~~~d~vi~ 220 (333)
T 1wly_A 142 KVKPGDYVLIHAAAGGMGHIMVPWARHLGATVIGTVSTEEKAETARKLGCHHT-INYSTQDFAEVVREITGGKGVDVVYD 220 (333)
T ss_dssp CCCTTCEEEETTTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHTCSEE-EETTTSCHHHHHHHHHTTCCEEEEEE
T ss_pred CCCCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCCEE-EECCCHHHHHHHHHHhCCCCCeEEEE
Confidence 56789999999963 444321 2456799999999988888877665433 24332211 1236899987
Q ss_pred hhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 016157 186 IAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (394)
Q Consensus 186 ~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~ 220 (394)
+..- ..++.+.++|++||++++...
T Consensus 221 ~~g~----------~~~~~~~~~l~~~G~iv~~g~ 245 (333)
T 1wly_A 221 SIGK----------DTLQKSLDCLRPRGMCAAYGH 245 (333)
T ss_dssp CSCT----------TTHHHHHHTEEEEEEEEECCC
T ss_pred CCcH----------HHHHHHHHhhccCCEEEEEec
Confidence 6542 346778899999999887643
|
| >3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=85.04 E-value=1.6 Score=42.71 Aligned_cols=98 Identities=13% Similarity=0.041 Sum_probs=60.1
Q ss_pred CCCCCCEEEEEcCcc-Cccc---ccCCCc-EEEEEeCCHHHHHHHHHcCCeEEEeecCCCC--------CCCCCccEEEe
Q 016157 119 SLPSGSLVLDAGCGN-GKYL---GLNPDC-FFVGCDISPSLIKICVDRGHEVLVADAVNLP--------YRSDFGDAAIS 185 (394)
Q Consensus 119 ~l~~g~~VLDvGCG~-G~~l---~~~~~~-~v~gvD~S~~~l~~a~~~~i~~~~~D~~~lp--------~~~~~fD~Vi~ 185 (394)
.+.+|.+||=+|+|. |.++ ....+. .|+++|.++.-++.+++.|.+.+. |..... .....+|+|+-
T Consensus 210 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi-~~~~~~~~~~i~~~t~g~g~D~vid 288 (404)
T 3ip1_A 210 GIRPGDNVVILGGGPIGLAAVAILKHAGASKVILSEPSEVRRNLAKELGADHVI-DPTKENFVEAVLDYTNGLGAKLFLE 288 (404)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTCSEEE-CTTTSCHHHHHHHHTTTCCCSEEEE
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCCEEE-cCCCCCHHHHHHHHhCCCCCCEEEE
Confidence 478899999999853 3322 124566 899999999999999988765432 222111 11236899987
Q ss_pred hhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 016157 186 IAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 221 (394)
Q Consensus 186 ~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~ 221 (394)
...-.. .-...+++-+.+.+++||++++....
T Consensus 289 ~~g~~~----~~~~~~~~~l~~~~~~~G~iv~~G~~ 320 (404)
T 3ip1_A 289 ATGVPQ----LVWPQIEEVIWRARGINATVAIVARA 320 (404)
T ss_dssp CSSCHH----HHHHHHHHHHHHCSCCCCEEEECSCC
T ss_pred CCCCcH----HHHHHHHHHHHhccCCCcEEEEeCCC
Confidence 543110 00122333333555999999887543
|
| >2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* | Back alignment and structure |
|---|
Probab=84.91 E-value=0.93 Score=43.66 Aligned_cols=92 Identities=14% Similarity=0.172 Sum_probs=62.6
Q ss_pred cCCCCCCEEEEEcC--ccCcccc---cCCCcEEEEEeCCHHHHHHHHHcCCeEEEeecCCCC-------CCCCCccEEEe
Q 016157 118 NSLPSGSLVLDAGC--GNGKYLG---LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLP-------YRSDFGDAAIS 185 (394)
Q Consensus 118 ~~l~~g~~VLDvGC--G~G~~l~---~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~lp-------~~~~~fD~Vi~ 185 (394)
..+.+|.+||-+|+ |.|..+. ...+++|+++|.+++-++.+++.+...+. |..+.. .....+|+|+.
T Consensus 159 ~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~Ga~~~~-~~~~~~~~~~~~~~~~~g~D~vid 237 (362)
T 2c0c_A 159 GGLSEGKKVLVTAAAGGTGQFAMQLSKKAKCHVIGTCSSDEKSAFLKSLGCDRPI-NYKTEPVGTVLKQEYPEGVDVVYE 237 (362)
T ss_dssp TCCCTTCEEEETTTTBTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEE-ETTTSCHHHHHHHHCTTCEEEEEE
T ss_pred cCCCCCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCCcEEE-ecCChhHHHHHHHhcCCCCCEEEE
Confidence 35788999999994 3444321 24577999999999999999887765432 222111 11246899987
Q ss_pred hhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 016157 186 IAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (394)
Q Consensus 186 ~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~ 220 (394)
... . ..++.+.++|+++|++++...
T Consensus 238 ~~g-----~-----~~~~~~~~~l~~~G~iv~~g~ 262 (362)
T 2c0c_A 238 SVG-----G-----AMFDLAVDALATKGRLIVIGF 262 (362)
T ss_dssp CSC-----T-----HHHHHHHHHEEEEEEEEECCC
T ss_pred CCC-----H-----HHHHHHHHHHhcCCEEEEEeC
Confidence 643 1 367788899999999887643
|
| >1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D | Back alignment and structure |
|---|
Probab=84.83 E-value=0.24 Score=46.43 Aligned_cols=89 Identities=13% Similarity=0.044 Sum_probs=59.2
Q ss_pred CCCCCEEEEEcC--ccCcccc---cCCCcEEEEEeCCHHHHHHHHHcCCeEEEeecCC-CCCCC--CCccEEEehhhhhh
Q 016157 120 LPSGSLVLDAGC--GNGKYLG---LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVN-LPYRS--DFGDAAISIAVLHH 191 (394)
Q Consensus 120 l~~g~~VLDvGC--G~G~~l~---~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~-lp~~~--~~fD~Vi~~~vl~h 191 (394)
+.+|.+||-+|+ |.|..+. ...+.+|+++|.+++-++.+++.+...+. |..+ ..+.+ +.+|+|+. ..-
T Consensus 123 ~~~g~~vlV~Ga~G~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga~~~~-~~~~~~~~~~~~~~~d~vid-~g~-- 198 (302)
T 1iz0_A 123 ARPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLALGAEEAA-TYAEVPERAKAWGGLDLVLE-VRG-- 198 (302)
T ss_dssp CCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHHTTCSEEE-EGGGHHHHHHHTTSEEEEEE-CSC--
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcCCCEEE-ECCcchhHHHHhcCceEEEE-CCH--
Confidence 778999999998 3444421 24567999999999988888877754332 2221 11000 46899987 431
Q ss_pred cCChhHHHHHHHHHHhccccCcEEEEEEc
Q 016157 192 LSTESRRKKAIEELVRVVKKGSLVLITVW 220 (394)
Q Consensus 192 l~~~~~~~~~L~ei~r~LkpGG~lli~~~ 220 (394)
..++.+.++|+++|++++...
T Consensus 199 --------~~~~~~~~~l~~~G~~v~~g~ 219 (302)
T 1iz0_A 199 --------KEVEESLGLLAHGGRLVYIGA 219 (302)
T ss_dssp --------TTHHHHHTTEEEEEEEEEC--
T ss_pred --------HHHHHHHHhhccCCEEEEEeC
Confidence 246778899999999887643
|
| >3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* | Back alignment and structure |
|---|
Probab=84.59 E-value=1.2 Score=42.21 Aligned_cols=91 Identities=16% Similarity=0.111 Sum_probs=62.3
Q ss_pred CCCCCCEEEEEcCcc--Cccc---ccCCCcEEEEEeCCHHHHHHHHHcCCeEEEeecCCCC--------CCCCCccEEEe
Q 016157 119 SLPSGSLVLDAGCGN--GKYL---GLNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLP--------YRSDFGDAAIS 185 (394)
Q Consensus 119 ~l~~g~~VLDvGCG~--G~~l---~~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~lp--------~~~~~fD~Vi~ 185 (394)
.+.+|.+||-+|++. |..+ ....+.+|+++|.+++-++.+++.+..... |..+.. .....+|+++.
T Consensus 145 ~~~~g~~vlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga~~~~-~~~~~~~~~~~~~~~~~~g~D~vid 223 (334)
T 3qwb_A 145 HVKKGDYVLLFAAAGGVGLILNQLLKMKGAHTIAVASTDEKLKIAKEYGAEYLI-NASKEDILRQVLKFTNGKGVDASFD 223 (334)
T ss_dssp CCCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEE-ETTTSCHHHHHHHHTTTSCEEEEEE
T ss_pred cCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCcEEE-eCCCchHHHHHHHHhCCCCceEEEE
Confidence 568899999999533 3332 124577999999999999999888754332 222211 11346999997
Q ss_pred hhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 016157 186 IAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (394)
Q Consensus 186 ~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~ 220 (394)
...- ..+..+.++|+|||++++...
T Consensus 224 ~~g~----------~~~~~~~~~l~~~G~iv~~G~ 248 (334)
T 3qwb_A 224 SVGK----------DTFEISLAALKRKGVFVSFGN 248 (334)
T ss_dssp CCGG----------GGHHHHHHHEEEEEEEEECCC
T ss_pred CCCh----------HHHHHHHHHhccCCEEEEEcC
Confidence 6542 246677889999999988643
|
| >3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus} | Back alignment and structure |
|---|
Probab=84.48 E-value=1.4 Score=42.04 Aligned_cols=88 Identities=11% Similarity=0.118 Sum_probs=59.3
Q ss_pred CCCEEEEEc-Cc-cCccc---ccCCCcEEEEEeCCHHHHHHHHHcCCeEEEeecCCCC-----CCCCCccEEEehhhhhh
Q 016157 122 SGSLVLDAG-CG-NGKYL---GLNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLP-----YRSDFGDAAISIAVLHH 191 (394)
Q Consensus 122 ~g~~VLDvG-CG-~G~~l---~~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~lp-----~~~~~fD~Vi~~~vl~h 191 (394)
+|.+||=+| +| .|.++ ....+++|+++|.+++-++.+++.+...+...-.++. ...+.+|+|+....
T Consensus 150 ~g~~VlV~gg~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~g~Dvv~d~~g--- 226 (346)
T 3fbg_A 150 EGKTLLIINGAGGVGSIATQIAKAYGLRVITTASRNETIEWTKKMGADIVLNHKESLLNQFKTQGIELVDYVFCTFN--- 226 (346)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEECCSHHHHHHHHHHTCSEEECTTSCHHHHHHHHTCCCEEEEEESSC---
T ss_pred CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCcEEEECCccHHHHHHHhCCCCccEEEECCC---
Confidence 789999995 44 23332 1245679999999999999999887654332111110 12346899987532
Q ss_pred cCChhHHHHHHHHHHhccccCcEEEEE
Q 016157 192 LSTESRRKKAIEELVRVVKKGSLVLIT 218 (394)
Q Consensus 192 l~~~~~~~~~L~ei~r~LkpGG~lli~ 218 (394)
-...+..+.++|+++|+++..
T Consensus 227 ------~~~~~~~~~~~l~~~G~iv~~ 247 (346)
T 3fbg_A 227 ------TDMYYDDMIQLVKPRGHIATI 247 (346)
T ss_dssp ------HHHHHHHHHHHEEEEEEEEES
T ss_pred ------chHHHHHHHHHhccCCEEEEE
Confidence 245678889999999998754
|
| >2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A* | Back alignment and structure |
|---|
Probab=84.34 E-value=1 Score=43.11 Aligned_cols=91 Identities=10% Similarity=-0.062 Sum_probs=61.5
Q ss_pred CCCCCCEEEEEcC--ccCcccc---cCCCcEEEEEeCCHHHHHHHHHcCCeEEEeecCCCC--------CCCCCccEEEe
Q 016157 119 SLPSGSLVLDAGC--GNGKYLG---LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLP--------YRSDFGDAAIS 185 (394)
Q Consensus 119 ~l~~g~~VLDvGC--G~G~~l~---~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~lp--------~~~~~fD~Vi~ 185 (394)
.+.+|.+||-.|+ |.|..+. ...+++|+++|.+++.++.+++.+.... .|..+.. .....+|+++.
T Consensus 159 ~~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~d~vi~ 237 (354)
T 2j8z_A 159 NVQAGDYVLIHAGLSGVGTAAIQLTRMAGAIPLVTAGSQKKLQMAEKLGAAAG-FNYKKEDFSEATLKFTKGAGVNLILD 237 (354)
T ss_dssp CCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTCSEE-EETTTSCHHHHHHHHTTTSCEEEEEE
T ss_pred CCCCCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCcEE-EecCChHHHHHHHHHhcCCCceEEEE
Confidence 5678999999985 3444321 2456799999999999888877665432 2333211 11246899987
Q ss_pred hhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 016157 186 IAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (394)
Q Consensus 186 ~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~ 220 (394)
+..- ..+....++|++||++++...
T Consensus 238 ~~G~----------~~~~~~~~~l~~~G~iv~~G~ 262 (354)
T 2j8z_A 238 CIGG----------SYWEKNVNCLALDGRWVLYGL 262 (354)
T ss_dssp SSCG----------GGHHHHHHHEEEEEEEEECCC
T ss_pred CCCc----------hHHHHHHHhccCCCEEEEEec
Confidence 6642 135667889999999887653
|
| >3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* | Back alignment and structure |
|---|
Probab=84.32 E-value=0.7 Score=43.69 Aligned_cols=91 Identities=13% Similarity=0.006 Sum_probs=62.3
Q ss_pred CCCCCCEEEEEcC--ccCcccc---cCCCcEEEEEeCCHHHHHHHHHcCCeEEEeecCCCC--------CCCCCccEEEe
Q 016157 119 SLPSGSLVLDAGC--GNGKYLG---LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLP--------YRSDFGDAAIS 185 (394)
Q Consensus 119 ~l~~g~~VLDvGC--G~G~~l~---~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~lp--------~~~~~fD~Vi~ 185 (394)
.+.+|.+||-+|+ |.|..+. ...+.+|+++|.+++-++.+++.+..... |..+.. .....+|+++.
T Consensus 137 ~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~Ga~~~~-~~~~~~~~~~~~~~~~~~g~Dvvid 215 (325)
T 3jyn_A 137 QVKPGEIILFHAAAGGVGSLACQWAKALGAKLIGTVSSPEKAAHAKALGAWETI-DYSHEDVAKRVLELTDGKKCPVVYD 215 (325)
T ss_dssp CCCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHTCSEEE-ETTTSCHHHHHHHHTTTCCEEEEEE
T ss_pred CCCCCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCCEEE-eCCCccHHHHHHHHhCCCCceEEEE
Confidence 5678999999984 2344321 24567999999999999999887754332 222211 11246999987
Q ss_pred hhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 016157 186 IAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (394)
Q Consensus 186 ~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~ 220 (394)
...- ..+..+.++|++||++++...
T Consensus 216 ~~g~----------~~~~~~~~~l~~~G~iv~~g~ 240 (325)
T 3jyn_A 216 GVGQ----------DTWLTSLDSVAPRGLVVSFGN 240 (325)
T ss_dssp SSCG----------GGHHHHHTTEEEEEEEEECCC
T ss_pred CCCh----------HHHHHHHHHhcCCCEEEEEec
Confidence 6542 246677899999999988754
|
| >4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli} | Back alignment and structure |
|---|
Probab=83.68 E-value=3.7 Score=38.79 Aligned_cols=94 Identities=13% Similarity=0.045 Sum_probs=63.1
Q ss_pred cCCCCCCEEEEEcCccCccc-----ccCCCcEEEEEeCCHHHHHHHHHcCCeEEEeecCCCC--------CCCCCccEEE
Q 016157 118 NSLPSGSLVLDAGCGNGKYL-----GLNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLP--------YRSDFGDAAI 184 (394)
Q Consensus 118 ~~l~~g~~VLDvGCG~G~~l-----~~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~lp--------~~~~~fD~Vi 184 (394)
..+.+|.+||=.|+|....+ +......++++|.+++-++.+++.|..... |..+.. -....+|+|+
T Consensus 156 ~~~~~g~~VlV~GaG~vG~~aiq~ak~~G~~~vi~~~~~~~k~~~a~~lGa~~~i-~~~~~~~~~~~~~~~~~~g~d~v~ 234 (346)
T 4a2c_A 156 AQGCENKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDISSEKLALAKSFGAMQTF-NSSEMSAPQMQSVLRELRFNQLIL 234 (346)
T ss_dssp TTCCTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEE-ETTTSCHHHHHHHHGGGCSSEEEE
T ss_pred hccCCCCEEEEECCCCcchHHHHHHHHcCCcEEEEEechHHHHHHHHHcCCeEEE-eCCCCCHHHHHHhhcccCCccccc
Confidence 45678999999998764432 223334678999999999999998754432 222211 1124578777
Q ss_pred ehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 016157 185 SIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 221 (394)
Q Consensus 185 ~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~ 221 (394)
.... -...+....++|++||++++....
T Consensus 235 d~~G---------~~~~~~~~~~~l~~~G~~v~~g~~ 262 (346)
T 4a2c_A 235 ETAG---------VPQTVELAVEIAGPHAQLALVGTL 262 (346)
T ss_dssp ECSC---------SHHHHHHHHHHCCTTCEEEECCCC
T ss_pred cccc---------ccchhhhhhheecCCeEEEEEecc
Confidence 6432 245678888999999999887543
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=83.66 E-value=2.2 Score=36.42 Aligned_cols=92 Identities=13% Similarity=0.076 Sum_probs=60.8
Q ss_pred CCEEEEEcCcc-Ccccc---cCC-CcEEEEEeCCHHHHHHHHHcCCeEEEeecCCCC----C-CCCCccEEEehhhhhhc
Q 016157 123 GSLVLDAGCGN-GKYLG---LNP-DCFFVGCDISPSLIKICVDRGHEVLVADAVNLP----Y-RSDFGDAAISIAVLHHL 192 (394)
Q Consensus 123 g~~VLDvGCG~-G~~l~---~~~-~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~lp----~-~~~~fD~Vi~~~vl~hl 192 (394)
+.+|+=+|+|. |..+. ... +..|+++|.+++.++.+++.++.++.+|..+.. . .-..+|+|+...
T Consensus 39 ~~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~~~~~~~~~~g~~~~~gd~~~~~~l~~~~~~~~ad~vi~~~----- 113 (183)
T 3c85_A 39 HAQVLILGMGRIGTGAYDELRARYGKISLGIEIREEAAQQHRSEGRNVISGDATDPDFWERILDTGHVKLVLLAM----- 113 (183)
T ss_dssp TCSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCHHHHHHHHHTTCCEEECCTTCHHHHHTBCSCCCCCEEEECC-----
T ss_pred CCcEEEECCCHHHHHHHHHHHhccCCeEEEEECCHHHHHHHHHCCCCEEEcCCCCHHHHHhccCCCCCCEEEEeC-----
Confidence 56899999874 43321 134 779999999999998888888888888876521 1 134589888742
Q ss_pred CChhHHHHHHHHHHhccccCcEEEEEEc
Q 016157 193 STESRRKKAIEELVRVVKKGSLVLITVW 220 (394)
Q Consensus 193 ~~~~~~~~~L~ei~r~LkpGG~lli~~~ 220 (394)
++.. ....+-.+.+.+.|++.++...-
T Consensus 114 ~~~~-~~~~~~~~~~~~~~~~~ii~~~~ 140 (183)
T 3c85_A 114 PHHQ-GNQTALEQLQRRNYKGQIAAIAE 140 (183)
T ss_dssp SSHH-HHHHHHHHHHHTTCCSEEEEEES
T ss_pred CChH-HHHHHHHHHHHHCCCCEEEEEEC
Confidence 2222 23334445666777778777653
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=80.90 E-value=4.4 Score=32.76 Aligned_cols=91 Identities=16% Similarity=0.134 Sum_probs=59.4
Q ss_pred CCEEEEEcCcc-Ccccc---cCCCcEEEEEeCCHHHHHHHHHcCCeEEEeecCCCC----CCCCCccEEEehhhhhhcCC
Q 016157 123 GSLVLDAGCGN-GKYLG---LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLP----YRSDFGDAAISIAVLHHLST 194 (394)
Q Consensus 123 g~~VLDvGCG~-G~~l~---~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~lp----~~~~~fD~Vi~~~vl~hl~~ 194 (394)
..+|+=+|||. |..+. ...+..|+++|.+++.++.+++.+..++.+|..+.. ..-..+|+|+.... +
T Consensus 6 ~~~v~I~G~G~iG~~la~~L~~~g~~V~~id~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~~d~vi~~~~-----~ 80 (141)
T 3llv_A 6 RYEYIVIGSEAAGVGLVRELTAAGKKVLAVDKSKEKIELLEDEGFDAVIADPTDESFYRSLDLEGVSAVLITGS-----D 80 (141)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTTCEEEECCTTCHHHHHHSCCTTCSEEEECCS-----C
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHCCCcEEECCCCCHHHHHhCCcccCCEEEEecC-----C
Confidence 35789999964 32221 145789999999999999888889999999987632 12246788886433 2
Q ss_pred hhHHHHHHHHHHhccccCcEEEEEEc
Q 016157 195 ESRRKKAIEELVRVVKKGSLVLITVW 220 (394)
Q Consensus 195 ~~~~~~~L~ei~r~LkpGG~lli~~~ 220 (394)
.+ ....+....+.+. .+.++...-
T Consensus 81 ~~-~n~~~~~~a~~~~-~~~iia~~~ 104 (141)
T 3llv_A 81 DE-FNLKILKALRSVS-DVYAIVRVS 104 (141)
T ss_dssp HH-HHHHHHHHHHHHC-CCCEEEEES
T ss_pred HH-HHHHHHHHHHHhC-CceEEEEEc
Confidence 22 3344445555555 556655543
|
| >3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=80.81 E-value=1.4 Score=41.96 Aligned_cols=89 Identities=16% Similarity=0.084 Sum_probs=60.9
Q ss_pred CCCCCCEEEEEcCc--cCccc---ccCCCcEEEEEeCCHHHHHHHHHcCCeEEEeecCCCC------CCCCCccEEEehh
Q 016157 119 SLPSGSLVLDAGCG--NGKYL---GLNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLP------YRSDFGDAAISIA 187 (394)
Q Consensus 119 ~l~~g~~VLDvGCG--~G~~l---~~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~lp------~~~~~fD~Vi~~~ 187 (394)
.+.+|.+||=+|++ .|.++ ....+++|+++ .+++-++.+++.+...+. +-.++. .....+|+|+...
T Consensus 147 ~~~~g~~VlV~Ga~g~iG~~~~q~a~~~Ga~Vi~~-~~~~~~~~~~~lGa~~i~-~~~~~~~~~~~~~~~~g~D~vid~~ 224 (343)
T 3gaz_A 147 QVQDGQTVLIQGGGGGVGHVAIQIALARGARVFAT-ARGSDLEYVRDLGATPID-ASREPEDYAAEHTAGQGFDLVYDTL 224 (343)
T ss_dssp CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEE-ECHHHHHHHHHHTSEEEE-TTSCHHHHHHHHHTTSCEEEEEESS
T ss_pred CCCCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEE-eCHHHHHHHHHcCCCEec-cCCCHHHHHHHHhcCCCceEEEECC
Confidence 56789999999953 34432 12457799999 888889999888877632 211111 1124689998754
Q ss_pred hhhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 016157 188 VLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 188 vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~ 219 (394)
. . ..+....++|+++|++++..
T Consensus 225 g-----~-----~~~~~~~~~l~~~G~iv~~g 246 (343)
T 3gaz_A 225 G-----G-----PVLDASFSAVKRFGHVVSCL 246 (343)
T ss_dssp C-----T-----HHHHHHHHHEEEEEEEEESC
T ss_pred C-----c-----HHHHHHHHHHhcCCeEEEEc
Confidence 3 1 35778888999999988764
|
| >2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A* | Back alignment and structure |
|---|
Probab=80.68 E-value=2.6 Score=40.15 Aligned_cols=91 Identities=11% Similarity=0.103 Sum_probs=62.0
Q ss_pred cCCCCC--CEEEEEcCcc--Ccccc---cCCCc-EEEEEeCCHHHHHHHHH-cCCeEEEeecCCCCC-------CCCCcc
Q 016157 118 NSLPSG--SLVLDAGCGN--GKYLG---LNPDC-FFVGCDISPSLIKICVD-RGHEVLVADAVNLPY-------RSDFGD 181 (394)
Q Consensus 118 ~~l~~g--~~VLDvGCG~--G~~l~---~~~~~-~v~gvD~S~~~l~~a~~-~~i~~~~~D~~~lp~-------~~~~fD 181 (394)
..+.+| .+||-.|++. |..+. ...+. +|+++|.+++-++.+++ .+.... .|..+..+ ..+.+|
T Consensus 154 ~~~~~g~~~~vlI~GasggiG~~~~~~a~~~Ga~~Vi~~~~~~~~~~~~~~~~g~~~~-~d~~~~~~~~~~~~~~~~~~d 232 (357)
T 2zb4_A 154 GHITAGSNKTMVVSGAAGACGSVAGQIGHFLGCSRVVGICGTHEKCILLTSELGFDAA-INYKKDNVAEQLRESCPAGVD 232 (357)
T ss_dssp SCCCTTSCCEEEESSTTBHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTSCCSEE-EETTTSCHHHHHHHHCTTCEE
T ss_pred cCCCCCCccEEEEECCCcHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCCceE-EecCchHHHHHHHHhcCCCCC
Confidence 357788 9999999843 43321 24577 99999999988888876 565432 34332110 112689
Q ss_pred EEEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 016157 182 AAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 182 ~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~ 219 (394)
+++.+.. ...+..+.++|++||++++..
T Consensus 233 ~vi~~~G----------~~~~~~~~~~l~~~G~iv~~G 260 (357)
T 2zb4_A 233 VYFDNVG----------GNISDTVISQMNENSHIILCG 260 (357)
T ss_dssp EEEESCC----------HHHHHHHHHTEEEEEEEEECC
T ss_pred EEEECCC----------HHHHHHHHHHhccCcEEEEEC
Confidence 9987654 145778889999999988764
|
| >3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A | Back alignment and structure |
|---|
Probab=80.27 E-value=2.5 Score=41.99 Aligned_cols=92 Identities=23% Similarity=0.262 Sum_probs=63.2
Q ss_pred cCCCCCCEEEEEcC-c-cCccc---ccCCCcEEEEEeCCHHHHHHHHHcCCeEEEeecCCCCC-----------------
Q 016157 118 NSLPSGSLVLDAGC-G-NGKYL---GLNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPY----------------- 175 (394)
Q Consensus 118 ~~l~~g~~VLDvGC-G-~G~~l---~~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~lp~----------------- 175 (394)
..+.+|.+||=+|+ | .|.++ ....++.+++++.++.-++.+++.|...+. |.....+
T Consensus 224 ~~~~~g~~VlV~GasG~vG~~avqlak~~Ga~vi~~~~~~~~~~~~~~lGa~~vi-~~~~~d~~~~~~~~~~~~~~~~~~ 302 (456)
T 3krt_A 224 AGMKQGDNVLIWGASGGLGSYATQFALAGGANPICVVSSPQKAEICRAMGAEAII-DRNAEGYRFWKDENTQDPKEWKRF 302 (456)
T ss_dssp TCCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHTCCEEE-ETTTTTCCSEEETTEECHHHHHHH
T ss_pred cCCCCCCEEEEECCCCHHHHHHHHHHHHcCCeEEEEECCHHHHHHHHhhCCcEEE-ecCcCcccccccccccchHHHHHH
Confidence 35688999999997 3 34332 224678999999999999999888765432 2221111
Q ss_pred --------CCCCccEEEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 016157 176 --------RSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (394)
Q Consensus 176 --------~~~~fD~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~ 220 (394)
....+|+|+-... ...+....++|++||++++...
T Consensus 303 ~~~i~~~t~g~g~Dvvid~~G----------~~~~~~~~~~l~~~G~iv~~G~ 345 (456)
T 3krt_A 303 GKRIRELTGGEDIDIVFEHPG----------RETFGASVFVTRKGGTITTCAS 345 (456)
T ss_dssp HHHHHHHHTSCCEEEEEECSC----------HHHHHHHHHHEEEEEEEEESCC
T ss_pred HHHHHHHhCCCCCcEEEEcCC----------chhHHHHHHHhhCCcEEEEEec
Confidence 1247899887543 1467788899999999988653
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 394 | ||||
| d1ve3a1 | 226 | c.66.1.43 (A:2-227) Hypothetical protein PH0226 {A | 1e-07 | |
| d1nw3a_ | 328 | c.66.1.31 (A:) Catalytic, N-terminal domain of his | 1e-07 | |
| d2i6ga1 | 198 | c.66.1.44 (A:1-198) Putative methyltransferase Teh | 2e-07 | |
| d1l3ia_ | 186 | c.66.1.22 (A:) Precorrin-6Y methyltransferase (Cbi | 2e-07 | |
| d2avna1 | 246 | c.66.1.41 (A:1-246) Hypothetical methyltransferase | 5e-06 | |
| d1nkva_ | 245 | c.66.1.21 (A:) Hypothetical Protein YjhP {Escheric | 8e-06 | |
| d1ri5a_ | 252 | c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransf | 1e-05 | |
| d1xvaa_ | 292 | c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Ra | 2e-05 | |
| d2gh1a1 | 281 | c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bac | 3e-05 | |
| d1wzna1 | 251 | c.66.1.43 (A:1-251) Hypothetical methyltransferase | 3e-05 | |
| d1pjza_ | 201 | c.66.1.36 (A:) Thiopurine S-methyltransferase {Pse | 5e-05 | |
| d1y8ca_ | 246 | c.66.1.43 (A:) Putative methyltransferase CAC2371 | 5e-05 | |
| d1u2za_ | 406 | c.66.1.31 (A:) Catalytic, N-terminal domain of his | 2e-04 | |
| d1o54a_ | 266 | c.66.1.13 (A:) Hypothetical protein TM0748 {Thermo | 4e-04 | |
| d1oria_ | 316 | c.66.1.6 (A:) Protein arginine N-methyltransferase | 8e-04 | |
| d1xxla_ | 234 | c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus | 9e-04 | |
| d1nt2a_ | 209 | c.66.1.3 (A:) Fibrillarin homologue {Archaeon Arch | 0.001 | |
| d2a14a1 | 257 | c.66.1.15 (A:5-261) Indolethylamine N-methyltransf | 0.001 | |
| d2b25a1 | 324 | c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 | 0.002 | |
| d1yzha1 | 204 | c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltra | 0.002 | |
| d1p91a_ | 268 | c.66.1.33 (A:) rRNA methyltransferase RlmA {Escher | 0.002 | |
| d2fcaa1 | 204 | c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltr | 0.004 |
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 226 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 50.1 bits (118), Expect = 1e-07
Identities = 35/215 (16%), Positives = 65/215 (30%), Gaps = 13/215 (6%)
Query: 88 KKYVHRVYDAIAPHFSSTRFAKWPKVATFLNS-LPSGSLVLDAGCGNGKYLGLNPD---- 142
K+Y +RV+ S ++ + L + VLD CG G + L D
Sbjct: 3 KEY-YRVFPTYTDINSQEYRSRIETLEPLLMKYMKKRGKVLDLACGVGGFSFLLEDYGFE 61
Query: 143 ----CFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRR 198
+ E +V DA L + D I I + H
Sbjct: 62 VVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIVHFEPL-EL 120
Query: 199 KKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGPGSPRVRSPSAR 258
+ +E+ RV+K ++ + + L + ++ + I R +
Sbjct: 121 NQVFKEVRRVLKPSGKFIMYFTDLRELLPRLKESLVVGQKYWISKVIPDQEERTVVIEFK 180
Query: 259 TLESIPETEDNGSEEQGKE--PKQSVPDKLWESIS 291
+ + N + G E K + E +
Sbjct: 181 SEQDSFRVRFNVWGKTGVELLAKLYFTKEAEEKVG 215
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} Length = 328 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.6 bits (120), Expect = 1e-07
Identities = 17/160 (10%), Positives = 44/160 (27%), Gaps = 34/160 (21%)
Query: 108 AKWPKVATFLN--SLPSGSLVLDAGCGNGKYL----GLNPDCFFVGCDISPSLIKICVDR 161
+ VA ++ + L +D G G G+ + G + + K
Sbjct: 135 TSFDLVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETM 194
Query: 162 GHE----------------VLVADAVNLPYRSDFGDAA-ISIAVLHHLSTESRRKKAIEE 204
E + D ++ +R + + I + ++E
Sbjct: 195 DREFRKWMKWYGKKHAEYTLERGDFLSEEWRERIANTSVIFVNNFAF---GPEVDHQLKE 251
Query: 205 LVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEW 244
+K+G ++ + K + + + +
Sbjct: 252 RFANMKEGGRIVSS--------KPFAPLNFRINSRNLSDI 283
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} Length = 198 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Score = 49.2 bits (116), Expect = 2e-07
Identities = 24/143 (16%), Positives = 40/143 (27%), Gaps = 21/143 (14%)
Query: 87 EKKYVHRVYDAIAPHFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGKYLGLNPDCFFV 146
++ Y Y H V + G LD GCGNG+ +
Sbjct: 5 DENYFTEKYGLTRTH---------SDVLAAAKVVAPGR-TLDLGCGNGRNSLYLAANGYD 54
Query: 147 GCDISPS---------LIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESR 197
+ + + + D L + ++ D +S V+ L +
Sbjct: 55 VTAWDKNPASMANLERIKAAEGLDNLQTDLVDLNTLTFDGEY-DFILSTVVMMFLEAQ-T 112
Query: 198 RKKAIEELVRVVKKGSLVLITVW 220
I + R K G LI
Sbjct: 113 IPGLIANMQRCTKPGGYNLIVAA 135
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Score = 48.3 bits (114), Expect = 2e-07
Identities = 17/120 (14%), Positives = 38/120 (31%), Gaps = 16/120 (13%)
Query: 120 LPSGSLVLDAGCGNGKYLGLNPDCFF--VGCDISPSLIKIC--------VDRGHEVLVAD 169
+ +D GCG G D +P I + ++ D
Sbjct: 31 PGKNDVAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGD 90
Query: 170 AVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSL 229
A + D A+ L ++ + + +K G +++T +E + +++
Sbjct: 91 APEALCKIPDIDIAVVGGSGGEL------QEILRIIKDKLKPGGRIIVTAILLETKFEAM 144
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} Length = 246 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Score = 45.1 bits (105), Expect = 5e-06
Identities = 33/140 (23%), Positives = 52/140 (37%), Gaps = 7/140 (5%)
Query: 88 KKYVHRVYDAIAPH----FSSTRFAKWPK-VATFLNS-LPSGSLVLDAGCGNGKY-LGLN 140
K YD IA + + ++ + + + +FL L + VLD G G GK+ L L
Sbjct: 2 KLRSWEFYDRIARAYDSMYETPKWKLYHRLIGSFLEEYLKNPCRVLDLGGGTGKWSLFLQ 61
Query: 141 PDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKK 200
F V + V +A G +A+ LS + K
Sbjct: 62 ERGFEVVLVDPSKEMLEVAREKGVKNVVEAKAEDLPFPSGAFEAVLALGDVLSYVENKDK 121
Query: 201 AIEELVRVVKKGSLVLITVW 220
A E+ RV+ L++ TV
Sbjct: 122 AFSEIRRVLVPDGLLIATVD 141
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} Length = 245 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Score = 44.6 bits (104), Expect = 8e-06
Identities = 27/138 (19%), Positives = 48/138 (34%), Gaps = 21/138 (15%)
Query: 92 HRVYDAIAPHFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNG---KYLGLNPDCFFVGC 148
HR+++ K+ + L + G+ +LD G G+G + G
Sbjct: 11 HRIHNPFTEE-------KYATLGRVLR-MKPGTRILDLGSGSGEMLCTWARDHGITGTGI 62
Query: 149 DISPSLIKICVDRGHEVLVADAVNLPYRSDFG-------DAAISIAVLHHLSTESRRKKA 201
D+S R E+ V++ V+ + G D A + A
Sbjct: 63 DMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVANEKCDVAACVGATWIA---GGFAGA 119
Query: 202 IEELVRVVKKGSLVLITV 219
E L + +K G ++LI
Sbjct: 120 EELLAQSLKPGGIMLIGE 137
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} Length = 252 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Score = 44.2 bits (103), Expect = 1e-05
Identities = 24/128 (18%), Positives = 34/128 (26%), Gaps = 13/128 (10%)
Query: 106 RFAKWPKVATFLNSLPSGSLVLDAGCGNG---KYLGLNPDCFFVGCDISPSLIKICVDRG 162
+ K G VLD GCG G + G DI+ I R
Sbjct: 8 NANNFIKACLIRLYTKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRA 67
Query: 163 HE--------VLVADAVNLPYRSDFGDAAISIA--VLHHLSTESRRKKAIEELVRVVKKG 212
D+ IS + ST A + R ++ G
Sbjct: 68 RNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPG 127
Query: 213 SLVLITVW 220
++TV
Sbjct: 128 GYFIMTVP 135
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 292 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 43.4 bits (101), Expect = 2e-05
Identities = 29/153 (18%), Positives = 48/153 (31%), Gaps = 22/153 (14%)
Query: 89 KYVHRVYDAIAPHFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGKY-LGLNPDCFFV- 146
RV+ S R A++ L VLD CG G + L + F V
Sbjct: 24 GEAARVWQLYIGDTRS-RTAEYKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEEGFSVT 82
Query: 147 GCDISPSLIKICVDRGHEVLVADAV---------------NLPYRSDFGDAAISIAVLHH 191
D S ++K + A ++P F H
Sbjct: 83 SVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAVICLGNSFAH 142
Query: 192 L----STESRRKKAIEELVRVVKKGSLVLITVW 220
L +S + A++ + +V+ G L++I
Sbjct: 143 LPDSKGDQSEHRLALKNIASMVRPGGLLVIDHR 175
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Score = 42.9 bits (100), Expect = 3e-05
Identities = 20/113 (17%), Positives = 39/113 (34%), Gaps = 13/113 (11%)
Query: 117 LNSLPSGSLVLDAGCGNGKYLG-----LNPDCFFVGCDISPSLIKICVDRGHEVLVADAV 171
+ + ++D GCG G L + G D +L+ + +
Sbjct: 22 VWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEF 81
Query: 172 NLPYRS-----DFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219
+ D D AI A L H + + +++++ VKKG ++
Sbjct: 82 LEGDATEIELNDKYDIAICHAFLLH---MTTPETMLQKMIHSVKKGGKIICFE 131
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 42.8 bits (99), Expect = 3e-05
Identities = 18/160 (11%), Positives = 42/160 (26%), Gaps = 16/160 (10%)
Query: 91 VHRVYDAIAPHFSSTRFAKWPKVATFLN---------SLPSGSLVLDAGCGNGKYLGLNP 141
++ +Y +A ++ + + +V ++ + VLD CG G
Sbjct: 1 MYELYTLLAEYYDTIYRRRIERVKAEIDFVEEIFKEDAKREVRRVLDLACGTGIPTLELA 60
Query: 142 DCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFG-------DAAISIAVLHHLST 194
+ + + + V R + DA
Sbjct: 61 ERGYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFKNEFDAVTMFFSTIMYFD 120
Query: 195 ESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWT 234
E +K ++ +K G + + + W
Sbjct: 121 EEDLRKLFSKVAEALKPGGVFITDFPCWFYGGRDGPVVWN 160
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} Length = 201 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Score = 41.6 bits (96), Expect = 5e-05
Identities = 25/174 (14%), Positives = 49/174 (28%), Gaps = 23/174 (13%)
Query: 120 LPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR---------------- 161
+ G+ VL CG + + VG ++S + ++
Sbjct: 18 VVPGARVLVPLCGKSQDMSWLSGQGYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVY 77
Query: 162 ---GHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLIT 218
G E+ D L R AA R++ ++ L ++ + L+
Sbjct: 78 AAPGIEIWCGDFFALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLI 137
Query: 219 VWAVEQEDKSLVTKWTPLTQKYVEEWIGPGSPRVRSPSARTLESIPETEDNGSE 272
+Q + Q ++ + + TL S G E
Sbjct: 138 TLEYDQALLE--GPPFSVPQTWLHRVMSGNWEVTKVGGQDTLHSSARGLKAGLE 189
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} Length = 246 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Score = 42.0 bits (97), Expect = 5e-05
Identities = 20/155 (12%), Positives = 45/155 (29%), Gaps = 15/155 (9%)
Query: 94 VYDAIAPHF-----SSTRFAKWPK--VATFLNSLPSGSLVLDAGCGNGKYLG--LNPDCF 144
Y+ A + + + KW + + + LD CG G
Sbjct: 2 CYNKFAHIYDKLIRADVDYKKWSDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPKFKN 61
Query: 145 FVGCDISPSLIKICV------DRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRR 198
D+S ++ + D NL F + +++
Sbjct: 62 TWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNINRKFDLITCCLDSTNYIIDSDDL 121
Query: 199 KKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKW 233
KK + + +K+G + + + + + + L
Sbjct: 122 KKYFKAVSNHLKEGGVFIFDINSYYKLSQVLGNND 156
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 406 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 40.4 bits (94), Expect = 2e-04
Identities = 19/146 (13%), Positives = 39/146 (26%), Gaps = 32/146 (21%)
Query: 120 LPSGSLVLDAGCGNGKYL----GLNPDCFFVGCDISPSLIKICVDR-------------- 161
L G +D G G G + GC+I + + +
Sbjct: 214 LKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMR 273
Query: 162 ----GHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLI 217
+ + N + + + K +E++++ K G ++
Sbjct: 274 LNNVEFSLKKSFVDNNRVAELIPQCDVILVNNFLFDED--LNKKVEKILQTAKVGCKIIS 331
Query: 218 TVWAVEQEDKSLVTKWTPLTQKYVEE 243
KSL + + VE
Sbjct: 332 L--------KSLRSLTYQINFYNVEN 349
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Score = 39.3 bits (91), Expect = 4e-04
Identities = 15/115 (13%), Positives = 32/115 (27%), Gaps = 6/115 (5%)
Query: 120 LPSGSLVLDAGCGNGK-----YLGLNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLP 174
+ G ++D G G+G + + K+ + + + V +
Sbjct: 101 VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIK 160
Query: 175 YRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSL 229
R D + V I++ +K G Q ++L
Sbjct: 161 VR-DISEGFDEKDVDALFLDVPDPWNYIDKCWEALKGGGRFATVCPTTNQVQETL 214
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 316 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 38.6 bits (89), Expect = 8e-04
Identities = 23/152 (15%), Positives = 42/152 (27%), Gaps = 17/152 (11%)
Query: 95 YDAIAPHFS----STRFAKWPKVATFLNSLPSGSLVLDAGCGNG---KYLGLNPDCFFVG 147
Y H R + L +VLD G G G + +G
Sbjct: 2 YAHFGIHEEMLKDEVRTLTYRNSMFHNRHLFKDKVVLDVGSGTGILCMFAAKAGARKVIG 61
Query: 148 CDISPSLIKIC-------VDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKK 200
+ S +D ++ + + D IS + + L ES
Sbjct: 62 IECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGYCLFYESMLNT 121
Query: 201 AIEELVRVVKKGSLVL---ITVWAVEQEDKSL 229
+ + + L+ T++ ED+
Sbjct: 122 VLHARDKWLAPDGLIFPDRATLYVTAIEDRQY 153
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} Length = 234 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Score = 38.4 bits (88), Expect = 9e-04
Identities = 29/154 (18%), Positives = 47/154 (30%), Gaps = 22/154 (14%)
Query: 120 LPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPS-------LIKICVDRGHEVLVADA 170
+ VLD G G G +G D + + A
Sbjct: 14 CRAEHRVLDIGAGAGHTALAFSPYVQECIGVDATKEMVEVASSFAQEKGVENVRFQQGTA 73
Query: 171 VNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLV 230
+LP+ D D HH S +KA+ E+ RV+K+ L+
Sbjct: 74 ESLPFPDDSFDIITCRYAAHHF---SDVRKAVREVARVLKQDGRFLLVDH---------Y 121
Query: 231 TKWTPLTQKYVEEWIGPGSPR-VRSPSARTLESI 263
P+ ++V P VR S +++
Sbjct: 122 APEDPVLDEFVNHLNRLRDPSHVRESSLSEWQAM 155
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 209 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Score = 37.8 bits (87), Expect = 0.001
Identities = 15/111 (13%), Positives = 35/111 (31%), Gaps = 11/111 (9%)
Query: 120 LPSGSLVLDAGCGNGKYL----GLNPDCFFVGCDISPSLIKICVDR-----GHEVLVADA 170
L VL G +G + + + + S + ++ L+ DA
Sbjct: 54 LRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDA 113
Query: 171 VNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 221
S + + ++ +++ + +K+ V+I V A
Sbjct: 114 SKPWKYSGIVEKV--DLIYQDIAQKNQIEILKANAEFFLKEKGEVVIMVKA 162
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} Length = 257 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.1 bits (87), Expect = 0.001
Identities = 22/208 (10%), Positives = 46/208 (22%), Gaps = 50/208 (24%)
Query: 88 KKYVHRVYDAIAPHFSSTRFAKWPK---VATFLNSLPSGSLVLDAGCGNGKY---LGLNP 141
+ Y+ Y K+ TF G ++D G G Y +
Sbjct: 14 RDYLATYYSFDGSPSPEAEMLKFNLECLHKTFGPGGLQGDTLIDIGSGPTIYQVLAACDS 73
Query: 142 DCFFVGCDISPSLIKICVDRGHE------------------------------------- 164
D + + +
Sbjct: 74 FQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRAAVKR 133
Query: 165 ----VLVADAVNLPYRSDFGDAAISIAVLHHLS-TESRRKKAIEELVRVVKKGSLVLITV 219
+ P D +++ + + + A+ L ++K G ++ TV
Sbjct: 134 VLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTV 193
Query: 220 WAVEQE--DKSLVTKWTPLTQKYVEEWI 245
L + VE+ +
Sbjct: 194 TLRLPSYMVGKREFSCVALEKGEVEQAV 221
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} Length = 324 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.8 bits (87), Expect = 0.002
Identities = 34/236 (14%), Positives = 59/236 (25%), Gaps = 28/236 (11%)
Query: 110 WPKVATF---LNSLPSGSLVLDAGCGNGKYL-----GLNPDCFFVGCDISPSLIKICVDR 161
+PK + + G VL+AG G+G + + ++ +
Sbjct: 83 FPKDINMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKN 142
Query: 162 ----GHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRK--------KAIEELVRVV 209
++ P DF IS A S + +
Sbjct: 143 YKHWRDSWKLSHVEEWPDNVDFIHKDISGATEDIKSLTFDAVALDMLNPHVTLPVFYPHL 202
Query: 210 KKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGPGSPRVRSPSARTLESIPETEDN 269
K G + + V + Q + L+ E I R + N
Sbjct: 203 KHGGVCAVYVVNITQVIE-LLDGIRTCELALSCEKISEV-------IVRDWLVCLAKQKN 254
Query: 270 GSEEQGKEPKQSVPDKLWESISLTSQSEDDSVISQDVKIITNQQEYFVPWHLPYHR 325
G Q E K + +L + + E + F P H
Sbjct: 255 GILAQKVESKINTDVQLDSQEKIGVKGELFQEDDHEESHSDFPYGSFPYVARPVHW 310
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} Length = 204 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Score = 36.8 bits (84), Expect = 0.002
Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 9/59 (15%)
Query: 109 KWPKVATFLNSLPSGSLVLDAGCGNGKYL----GLNPDCFFVGCDISPSLIKICVDRGH 163
KW + F N P + ++ G G G ++ NPD ++G DI S++ +D+
Sbjct: 23 KWRDL--FGNDNP---IHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVL 76
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} Length = 268 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Score = 37.2 bits (85), Expect = 0.002
Identities = 31/107 (28%), Positives = 37/107 (34%), Gaps = 16/107 (14%)
Query: 121 PSGSLVLDAGCGNGKYL----GLNPDCFFVGCDISPSLIKI--CVDRGHEVLVADAVNLP 174
+ VLD GCG G Y P+ G D+S IK VA + LP
Sbjct: 83 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLP 142
Query: 175 YRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 221
+ DA I I EEL RVVK G V+
Sbjct: 143 FSDTSMDAIIRIYAPCKA----------EELARVVKPGGWVITATPG 179
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} Length = 204 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Score = 36.0 bits (82), Expect = 0.004
Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 9/60 (15%)
Query: 109 KWPKVATFLNSLPSGSLVLDAGCGNGKYL----GLNPDCFFVGCDISPSLIKICVDRGHE 164
KW V F N P + ++ G G G+++ NPD ++G ++ S+I V + +
Sbjct: 21 KWNTV--FGNDNP---IHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKD 75
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 394 | |||
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 99.9 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 99.82 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 99.82 | |
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 99.81 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 99.8 | |
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 99.8 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 99.78 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 99.76 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 99.76 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 99.72 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 99.72 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 99.71 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 99.7 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 99.7 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 99.68 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 99.68 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 99.67 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 99.65 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 99.64 | |
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 99.64 | |
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 99.63 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 99.59 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 99.56 | |
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.54 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 99.52 | |
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.51 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 99.49 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 99.48 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 99.46 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 99.45 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 99.45 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 99.45 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 99.44 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 99.44 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 99.4 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 99.4 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 99.39 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 99.38 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 99.38 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 99.34 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 99.29 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 99.29 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 99.28 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 99.28 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 99.25 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 99.24 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 99.23 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 99.2 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 99.15 | |
| d1af7a2 | 193 | Chemotaxis receptor methyltransferase CheR, C-term | 99.07 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 99.04 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 99.01 | |
| d1fp1d2 | 244 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 98.94 | |
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 98.88 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 98.85 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 98.78 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 98.78 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 98.76 | |
| d1fp2a2 | 244 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 98.67 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 98.61 | |
| d1kyza2 | 243 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 98.61 | |
| d2igta1 | 309 | Putative methyltransferase Atu0340 {Agrobacterium | 98.59 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 98.58 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 98.54 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 98.44 | |
| d1ws6a1 | 171 | Methyltransferase TTHA0928 {Thermus thermophilus [ | 98.43 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 98.38 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 98.3 | |
| d2f8la1 | 328 | Hypothetical protein Lmo1582 {Listeria monocytogen | 98.28 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 98.13 | |
| d2h00a1 | 250 | Methyltransferase 10 domain containing protein MET | 98.12 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 98.07 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 98.07 | |
| d2fpoa1 | 183 | Methylase YhhF {Escherichia coli [TaxId: 562]} | 98.05 | |
| d2fhpa1 | 182 | Putative methylase EF2452 {Enterococcus faecalis [ | 98.04 | |
| d1ej0a_ | 180 | RNA methyltransferase FtsJ {Escherichia coli [TaxI | 98.02 | |
| d1jsxa_ | 207 | Glucose-inhibited division protein B (GidB) {Esche | 98.01 | |
| d2ih2a1 | 223 | DNA methylase TaqI, N-terminal domain {Thermus aqu | 97.99 | |
| d1wg8a2 | 182 | TM0872, methyltransferase domain {Thermus thermoph | 97.99 | |
| d1susa1 | 227 | Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag | 97.96 | |
| d1qama_ | 235 | rRNA adenine dimethylase {Bacillus subtilis, Ermc' | 97.92 | |
| d1inla_ | 295 | Spermidine synthase {Thermotoga maritima [TaxId: 2 | 97.91 | |
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 97.85 | |
| d1xj5a_ | 290 | Spermidine synthase {Thale cress (Arabidopsis thal | 97.79 | |
| d1yuba_ | 245 | rRNA adenine dimethylase {Streptococcus pneumoniae | 97.73 | |
| d1iy9a_ | 274 | Spermidine synthase {Bacillus subtilis [TaxId: 142 | 97.71 | |
| d1ixka_ | 313 | Hypothetical methyltransferase PH1374 {Archaeon Py | 97.68 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 97.64 | |
| d1xdza_ | 239 | Glucose-inhibited division protein B (GidB) {Bacil | 97.5 | |
| d1sqga2 | 284 | Ribosomal RNA small subunit methyltransferase B, R | 97.49 | |
| d2bm8a1 | 232 | Cephalosporin hydroxylase CmcI {Streptomyces clavu | 97.47 | |
| d2b9ea1 | 293 | NOL1R {Human (Homo sapiens) [TaxId: 9606]} | 97.29 | |
| d2ifta1 | 183 | Putative methylase HI0767 {Haemophilus influenzae | 97.07 | |
| d2okca1 | 425 | Type I restriction enzyme StySJI M protein {Bacter | 97.03 | |
| d1qyra_ | 252 | High level kasugamycin resistance protein KsgA {Es | 96.92 | |
| d1uwva2 | 358 | rRNA (Uracil-5-)-methyltransferase RumA, catalytic | 96.8 | |
| d1zq9a1 | 278 | Probable dimethyladenosine transferase {Human (Hom | 96.77 | |
| d2p41a1 | 257 | An RNA cap (nucleoside-2'-O-)-methyltransferase do | 96.71 | |
| d2dula1 | 375 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 96.43 | |
| d2ar0a1 | 524 | M.EcoKI {Escherichia coli [TaxId: 562]} | 96.32 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 95.96 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 95.94 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 95.88 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 95.57 | |
| d1m6ex_ | 359 | Salicylic acid carboxyl methyltransferase (SAMT) { | 95.56 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 95.55 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 95.27 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 95.14 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 94.91 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 94.72 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 94.6 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 94.57 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 93.79 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 93.39 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 92.09 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 91.62 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 90.94 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 90.09 | |
| d1i4wa_ | 322 | Transcription factor sc-mtTFB {Baker's yeast (Sacc | 89.79 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 89.56 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 88.94 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 88.55 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 88.38 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 86.17 | |
| d2oyra1 | 250 | Hypothetical protein YhiQ {Shigella flexneri [TaxI | 85.24 | |
| d1booa_ | 320 | m.PvuII N4 cytosine-specific DNA methyltransferase | 85.0 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 84.73 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 83.66 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 82.86 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 80.6 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 80.14 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 80.01 |
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=99.90 E-value=3.5e-24 Score=192.88 Aligned_cols=126 Identities=18% Similarity=0.310 Sum_probs=103.7
Q ss_pred HHHHHhhccccccc---cccchHHHHHHHcCCCCCCEEEEEcCccCcccccCCCcEEEEEeCCHHHHHHHHHcCCeEEEe
Q 016157 92 HRVYDAIAPHFSST---RFAKWPKVATFLNSLPSGSLVLDAGCGNGKYLGLNPDCFFVGCDISPSLIKICVDRGHEVLVA 168 (394)
Q Consensus 92 ~~~Yd~~a~~y~~~---~~~~~~~l~~~l~~l~~g~~VLDvGCG~G~~l~~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~ 168 (394)
.++|++++..|+.- ....+......+..+.++++|||||||+|.++.... .++|+|+|+.|++.|+++++.++++
T Consensus 3 ~~~f~~~a~~Yd~w~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~~~--~~~giD~s~~~~~~a~~~~~~~~~~ 80 (208)
T d1vlma_ 3 WHIFERFVNEYERWFLVHRFAYLSELQAVKCLLPEGRGVEIGVGTGRFAVPLK--IKIGVEPSERMAEIARKRGVFVLKG 80 (208)
T ss_dssp THHHHHTHHHHHHHHHHTHHHHHHHHHHHHHHCCSSCEEEETCTTSTTHHHHT--CCEEEESCHHHHHHHHHTTCEEEEC
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhCCCCeEEEECCCCcccccccc--eEEEEeCChhhcccccccccccccc
Confidence 46777777777641 111123334445555667799999999999875432 4689999999999999999999999
Q ss_pred ecCCCCCCCCCccEEEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCc
Q 016157 169 DAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAV 222 (394)
Q Consensus 169 D~~~lp~~~~~fD~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~ 222 (394)
|+.++|+++++||+|+++.+|+|+++ +..+|+++.++|||||.+++.++..
T Consensus 81 d~~~l~~~~~~fD~I~~~~~l~h~~d---~~~~l~~~~~~L~pgG~l~i~~~~~ 131 (208)
T d1vlma_ 81 TAENLPLKDESFDFALMVTTICFVDD---PERALKEAYRILKKGGYLIVGIVDR 131 (208)
T ss_dssp BTTBCCSCTTCEEEEEEESCGGGSSC---HHHHHHHHHHHEEEEEEEEEEEECS
T ss_pred cccccccccccccccccccccccccc---cccchhhhhhcCCCCceEEEEecCC
Confidence 99999999999999999999999998 7899999999999999999998754
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.82 E-value=1.2e-20 Score=170.41 Aligned_cols=113 Identities=24% Similarity=0.328 Sum_probs=96.4
Q ss_pred chHHHHHHHc-CCCCCCEEEEEcCccCccccc--CCCcEEEEEeCCHHHHHHHHHc------CCeEEEeecCCCCCCCCC
Q 016157 109 KWPKVATFLN-SLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR------GHEVLVADAVNLPYRSDF 179 (394)
Q Consensus 109 ~~~~l~~~l~-~l~~g~~VLDvGCG~G~~l~~--~~~~~v~gvD~S~~~l~~a~~~------~i~~~~~D~~~lp~~~~~ 179 (394)
.+..+..++. .++++.+|||||||+|.++.. ..+..|+|+|+|+.|++.|+++ .+.++.+|+.++|+++++
T Consensus 23 ~~~~~~~~~~~~l~~~~~ILDiGcG~G~~~~~la~~~~~v~giD~S~~~i~~ak~~~~~~~~~~~~~~~d~~~l~~~~~~ 102 (226)
T d1ve3a1 23 RIETLEPLLMKYMKKRGKVLDLACGVGGFSFLLEDYGFEVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKT 102 (226)
T ss_dssp HHHHHHHHHHHSCCSCCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTC
T ss_pred HHHHHHHHHHHhcCCCCEEEEECCCcchhhhhHhhhhcccccccccccchhhhhhhhccccccccccccccccccccCcC
Confidence 3455555553 478889999999999997642 4577999999999999999876 478899999999999999
Q ss_pred ccEEEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCc
Q 016157 180 GDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAV 222 (394)
Q Consensus 180 fD~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~ 222 (394)
||+|++..+++|+++.+ +.++|+++.++|||||++++..+..
T Consensus 103 fD~I~~~~~l~~~~~~d-~~~~l~~i~~~LkpgG~lii~~~~~ 144 (226)
T d1ve3a1 103 FDYVIFIDSIVHFEPLE-LNQVFKEVRRVLKPSGKFIMYFTDL 144 (226)
T ss_dssp EEEEEEESCGGGCCHHH-HHHHHHHHHHHEEEEEEEEEEEECH
T ss_pred ceEEEEecchhhCChhH-HHHHHHHHHHHcCcCcEEEEEEcCc
Confidence 99999999999997544 7899999999999999999987654
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=99.82 E-value=2.4e-20 Score=170.58 Aligned_cols=129 Identities=28% Similarity=0.414 Sum_probs=103.2
Q ss_pred HHHHHHhhcccccccc----ccchHHHHH-HH-cCCCCCCEEEEEcCccCccccc--CCCcEEEEEeCCHHHHHHHHHcC
Q 016157 91 VHRVYDAIAPHFSSTR----FAKWPKVAT-FL-NSLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDRG 162 (394)
Q Consensus 91 v~~~Yd~~a~~y~~~~----~~~~~~l~~-~l-~~l~~g~~VLDvGCG~G~~l~~--~~~~~v~gvD~S~~~l~~a~~~~ 162 (394)
..++|++++..|+... ...|..+.. ++ ..++++.+|||+|||+|.++.. ..+.+|+|+|+|+.|++.|++++
T Consensus 5 ~~~~yd~~a~~Yd~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~l~~a~~~~ 84 (246)
T d2avna1 5 SWEFYDRIARAYDSMYETPKWKLYHRLIGSFLEEYLKNPCRVLDLGGGTGKWSLFLQERGFEVVLVDPSKEMLEVAREKG 84 (246)
T ss_dssp HHHHHHHHHHHHGGGGCSHHHHHHHHHHHHHHHHHCCSCCEEEEETCTTCHHHHHHHTTTCEEEEEESCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcCCCCEEEEECCCCchhcccccccceEEEEeeccccccccccccc
Confidence 3467788777776432 223333322 22 3467788999999999998642 55779999999999999999985
Q ss_pred -CeEEEeecCCCCCCCCCccEEEeh-hhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCc
Q 016157 163 -HEVLVADAVNLPYRSDFGDAAISI-AVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAV 222 (394)
Q Consensus 163 -i~~~~~D~~~lp~~~~~fD~Vi~~-~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~ 222 (394)
..++.+|+.++|+++++||+|++. .++||+++ +.++|+++.++|||||.+++.+++.
T Consensus 85 ~~~~~~~~~~~l~~~~~~fD~ii~~~~~~~~~~d---~~~~l~~i~r~Lk~gG~~ii~~~~~ 143 (246)
T d2avna1 85 VKNVVEAKAEDLPFPSGAFEAVLALGDVLSYVEN---KDKAFSEIRRVLVPDGLLIATVDNF 143 (246)
T ss_dssp CSCEEECCTTSCCSCTTCEEEEEECSSHHHHCSC---HHHHHHHHHHHEEEEEEEEEEEEBH
T ss_pred ccccccccccccccccccccceeeecchhhhhhh---HHHHHHHHHhhcCcCcEEEEEECCH
Confidence 467899999999999999999985 69999998 7889999999999999999998643
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=99.81 E-value=3.4e-20 Score=169.83 Aligned_cols=104 Identities=22% Similarity=0.250 Sum_probs=93.0
Q ss_pred HcCCCCCCEEEEEcCccCccccc--CCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeecCCCCCCCCCccEEEehh
Q 016157 117 LNSLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFGDAAISIA 187 (394)
Q Consensus 117 l~~l~~g~~VLDvGCG~G~~l~~--~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~lp~~~~~fD~Vi~~~ 187 (394)
...++||.+|||||||+|.++.. ..+.+|+|+|+|+.|++.|+++ ++.++++|+.++|+++++||+|+|..
T Consensus 11 ~~~~~~~~rILDiGcGtG~~~~~la~~~~~v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~ 90 (234)
T d1xxla_ 11 TAECRAEHRVLDIGAGAGHTALAFSPYVQECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDDSFDIITCRY 90 (234)
T ss_dssp HHTCCTTCEEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTTCEEEEEEES
T ss_pred HhCCCCCCEEEEeCCcCcHHHHHHHHhCCeEEEEeCChhhhhhhhhhhcccccccccccccccccccccccccceeeeec
Confidence 34688999999999999997642 3456999999999999999876 57899999999999999999999999
Q ss_pred hhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCcc
Q 016157 188 VLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVE 223 (394)
Q Consensus 188 vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~~ 223 (394)
+++|+++ +..+|+++.|+|||||++++..+...
T Consensus 91 ~l~~~~d---~~~~l~~~~r~LkpgG~~~~~~~~~~ 123 (234)
T d1xxla_ 91 AAHHFSD---VRKAVREVARVLKQDGRFLLVDHYAP 123 (234)
T ss_dssp CGGGCSC---HHHHHHHHHHHEEEEEEEEEEEECBC
T ss_pred eeecccC---HHHHHHHHHHeeCCCcEEEEEEcCCC
Confidence 9999998 88999999999999999999887654
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=99.80 E-value=7.2e-20 Score=168.77 Aligned_cols=101 Identities=15% Similarity=0.122 Sum_probs=87.6
Q ss_pred CCCCEEEEEcCccCccccc--CCCcEEEEEeCCHHHHHHHHHc------CCeEEEeecCCCCCCCCCccEEEeh-hhhhh
Q 016157 121 PSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR------GHEVLVADAVNLPYRSDFGDAAISI-AVLHH 191 (394)
Q Consensus 121 ~~g~~VLDvGCG~G~~l~~--~~~~~v~gvD~S~~~l~~a~~~------~i~~~~~D~~~lp~~~~~fD~Vi~~-~vl~h 191 (394)
+++.+|||||||+|.++.. ..+.+|+|+|+|+.|++.|+++ +++++++|+.++++ +++||+|+|. .+++|
T Consensus 36 ~~~~~vLDiGCG~G~~~~~l~~~g~~v~GvD~S~~ml~~A~~~~~~~~~~v~~~~~d~~~~~~-~~~fD~i~~~~~~~~~ 114 (246)
T d1y8ca_ 36 LVFDDYLDLACGTGNLTENLCPKFKNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNI-NRKFDLITCCLDSTNY 114 (246)
T ss_dssp CCTTEEEEETCTTSTTHHHHGGGSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCC-SCCEEEEEECTTGGGG
T ss_pred CCCCeEEEEeCcCCHHHHHHHHhCCccEeeccchhhhhhccccccccCccceeeccchhhhcc-cccccccceeeeeeec
Confidence 4567999999999998642 4467999999999999999886 58999999999886 5689999986 68999
Q ss_pred cCChhHHHHHHHHHHhccccCcEEEEEEcCc
Q 016157 192 LSTESRRKKAIEELVRVVKKGSLVLITVWAV 222 (394)
Q Consensus 192 l~~~~~~~~~L~ei~r~LkpGG~lli~~~~~ 222 (394)
+.+.+++.++|++++++|||||.|++.++..
T Consensus 115 ~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~ 145 (246)
T d1y8ca_ 115 IIDSDDLKKYFKAVSNHLKEGGVFIFDINSY 145 (246)
T ss_dssp CCSHHHHHHHHHHHHTTEEEEEEEEEEEECH
T ss_pred cCCHHHHHHHHHHHHHhCCCCeEEEEEeCCH
Confidence 9888778999999999999999999987654
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=99.80 E-value=5.4e-20 Score=167.31 Aligned_cols=110 Identities=21% Similarity=0.267 Sum_probs=93.7
Q ss_pred hHHHHHHHcCCCCCCEEEEEcCccCccccc--CCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeecCCCCCCCCCc
Q 016157 110 WPKVATFLNSLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFG 180 (394)
Q Consensus 110 ~~~l~~~l~~l~~g~~VLDvGCG~G~~l~~--~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~lp~~~~~f 180 (394)
+.++.+. ..++++.+|||||||+|.++.. ..+.+|+|+|+|+.|++.|+++ +++++++|+.++|+++++|
T Consensus 4 ~~~ll~~-~~l~~~~rVLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~~~l~~~~~~f 82 (231)
T d1vl5a_ 4 LAKLMQI-AALKGNEEVLDVATGGGHVANAFAPFVKKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTDERF 82 (231)
T ss_dssp HHHHHHH-HTCCSCCEEEEETCTTCHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCTTCE
T ss_pred HHHHHHh-cCCCCcCEEEEecccCcHHHHHHHHhCCEEEEEECCHHHHhhhhhccccccccccccccccccccccccccc
Confidence 3444444 3578889999999999997532 3456999999999999999875 5789999999999999999
Q ss_pred cEEEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCcc
Q 016157 181 DAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVE 223 (394)
Q Consensus 181 D~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~~ 223 (394)
|+|+|..++||+++ +..+|+++.++|||||++++..+...
T Consensus 83 D~v~~~~~l~~~~d---~~~~l~~~~r~LkpgG~l~i~~~~~~ 122 (231)
T d1vl5a_ 83 HIVTCRIAAHHFPN---PASFVSEAYRVLKKGGQLLLVDNSAP 122 (231)
T ss_dssp EEEEEESCGGGCSC---HHHHHHHHHHHEEEEEEEEEEEEEBC
T ss_pred ccccccccccccCC---HHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence 99999999999998 88999999999999999999876543
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=99.78 E-value=3.1e-19 Score=162.47 Aligned_cols=102 Identities=19% Similarity=0.255 Sum_probs=84.9
Q ss_pred CCCCCCEEEEEcCccCcccc----c--CCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeecCCCCCCCCCccEEE
Q 016157 119 SLPSGSLVLDAGCGNGKYLG----L--NPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAI 184 (394)
Q Consensus 119 ~l~~g~~VLDvGCG~G~~l~----~--~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~lp~~~~~fD~Vi 184 (394)
.++++.+|||||||+|..+. . .++.+|+|+|+|+.|++.|+++ .+.+..+|+.+++ .+.+|+|+
T Consensus 36 ~~~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~~--~~~~d~i~ 113 (225)
T d1im8a_ 36 FVTADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVE--IKNASMVI 113 (225)
T ss_dssp HCCTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTCC--CCSEEEEE
T ss_pred hcCCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhccc--cccceeeE
Confidence 47889999999999998642 2 4788999999999999999986 2456667776655 46789999
Q ss_pred ehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCcc
Q 016157 185 SIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVE 223 (394)
Q Consensus 185 ~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~~ 223 (394)
++.++||++.++ +.++|++++++|||||.+++..+...
T Consensus 114 ~~~~l~~~~~~d-~~~~l~~i~~~LkpgG~li~~~~~~~ 151 (225)
T d1im8a_ 114 LNFTLQFLPPED-RIALLTKIYEGLNPNGVLVLSEKFRF 151 (225)
T ss_dssp EESCGGGSCGGG-HHHHHHHHHHHEEEEEEEEEEEECCC
T ss_pred EeeeccccChhh-HHHHHHHHHHhCCCCceeeccccccc
Confidence 999999997544 78999999999999999999876543
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.76 E-value=4e-19 Score=161.56 Aligned_cols=100 Identities=15% Similarity=0.111 Sum_probs=86.7
Q ss_pred CCCCCEEEEEcCccCccccc--CC-CcEEEEEeCCHHHHHHHHHc-------CCeEEEeecCCCCCCCCCccEEEehhhh
Q 016157 120 LPSGSLVLDAGCGNGKYLGL--NP-DCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFGDAAISIAVL 189 (394)
Q Consensus 120 l~~g~~VLDvGCG~G~~l~~--~~-~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~lp~~~~~fD~Vi~~~vl 189 (394)
..++.+|||||||+|.++.. .+ ..+|+|+|+|+.|++.|+++ +++++++|+.++++.+++||+|++..++
T Consensus 58 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~ak~~~~~~~~~~~~f~~~d~~~~~~~~~~fD~I~~~~~l 137 (222)
T d2ex4a1 58 KTGTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVI 137 (222)
T ss_dssp CCCCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESCG
T ss_pred CCCCCEEEEeccCCCHhhHHHHHhcCCEEEEeecCHHHhhcccccccccccccccccccccccccccccccccccccccc
Confidence 45668999999999987532 23 34899999999999999986 3589999999999889999999999999
Q ss_pred hhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 016157 190 HHLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (394)
Q Consensus 190 ~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~ 220 (394)
||+++++ +.++|+++.++|||||.+++..+
T Consensus 138 ~h~~~~~-~~~~l~~i~~~Lk~~G~~~i~~~ 167 (222)
T d2ex4a1 138 GHLTDQH-LAEFLRRCKGSLRPNGIIVIKDN 167 (222)
T ss_dssp GGSCHHH-HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccchhhh-hhhHHHHHHHhcCCcceEEEEEc
Confidence 9998754 67899999999999999999864
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=99.76 E-value=6e-19 Score=166.08 Aligned_cols=102 Identities=22% Similarity=0.164 Sum_probs=91.5
Q ss_pred CCCCCCEEEEEcCccCccccc---CCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeecCCCCCCCCCccEEEehh
Q 016157 119 SLPSGSLVLDAGCGNGKYLGL---NPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISIA 187 (394)
Q Consensus 119 ~l~~g~~VLDvGCG~G~~l~~---~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~lp~~~~~fD~Vi~~~ 187 (394)
.++++.+|||||||+|.++.. ..+..|+|+|+|+.|++.|+++ +++++++|+.++|+++++||+|++..
T Consensus 64 ~l~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l~~~~~sfD~V~~~~ 143 (282)
T d2o57a1 64 VLQRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCEDNSYDFIWSQD 143 (282)
T ss_dssp CCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSCTTCEEEEEEES
T ss_pred CCCCCCEEEEeCCCCcHHHhhhhccCCcEEEEEeccchhhhhhhcccccccccccccccccccccccccccccchhhccc
Confidence 578999999999999987532 3467999999999999999876 47899999999999999999999999
Q ss_pred hhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCcc
Q 016157 188 VLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVE 223 (394)
Q Consensus 188 vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~~ 223 (394)
+++|+++ +..+|+++.++|||||+|++..+...
T Consensus 144 ~l~h~~d---~~~~l~~~~~~LkpgG~l~~~~~~~~ 176 (282)
T d2o57a1 144 AFLHSPD---KLKVFQECARVLKPRGVMAITDPMKE 176 (282)
T ss_dssp CGGGCSC---HHHHHHHHHHHEEEEEEEEEEEEEEC
T ss_pred hhhhccC---HHHHHHHHHHhcCCCcEEEEEEeecC
Confidence 9999998 78999999999999999999987554
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.72 E-value=3.5e-18 Score=157.02 Aligned_cols=127 Identities=17% Similarity=0.266 Sum_probs=95.7
Q ss_pred HHHHhhccccccccc---cch----HHHHHHHc--CCCCCCEEEEEcCccCccccc--CCCcEEEEEeCCHHHHHHHHHc
Q 016157 93 RVYDAIAPHFSSTRF---AKW----PKVATFLN--SLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR 161 (394)
Q Consensus 93 ~~Yd~~a~~y~~~~~---~~~----~~l~~~l~--~l~~g~~VLDvGCG~G~~l~~--~~~~~v~gvD~S~~~l~~a~~~ 161 (394)
++|+.+++.|+.... ..+ ..+..++. ..+++.+|||||||+|.++.. ..+..|+|+|+|+.|++.|+++
T Consensus 3 ~~~~~~a~~Yd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLDiGcGtG~~~~~l~~~~~~v~gvD~s~~mi~~a~~~ 82 (251)
T d1wzna1 3 ELYTLLAEYYDTIYRRRIERVKAEIDFVEEIFKEDAKREVRRVLDLACGTGIPTLELAERGYEVVGLDLHEEMLRVARRK 82 (251)
T ss_dssp GGGTTTGGGHHHHTHHHHHTHHHHHHHHHHHHHHTCSSCCCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred chhHhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCCccchhhcccceEEEEEeeccccccccccc
Confidence 456666666665311 111 12223332 234567999999999997542 4567999999999999999987
Q ss_pred ------CCeEEEeecCCCCCCCCCccEEEeh-hhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 016157 162 ------GHEVLVADAVNLPYRSDFGDAAISI-AVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 221 (394)
Q Consensus 162 ------~i~~~~~D~~~lp~~~~~fD~Vi~~-~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~ 221 (394)
++++.++|+++++++ +.||+|+|. .+++|+... .+..+|+++.++|||||++++....
T Consensus 83 ~~~~~~~i~~~~~d~~~l~~~-~~fD~I~~~~~~~~~~~~~-~~~~~L~~~~~~LkpgG~lii~~~~ 147 (251)
T d1wzna1 83 AKERNLKIEFLQGDVLEIAFK-NEFDAVTMFFSTIMYFDEE-DLRKLFSKVAEALKPGGVFITDFPC 147 (251)
T ss_dssp HHHTTCCCEEEESCGGGCCCC-SCEEEEEECSSGGGGSCHH-HHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred cccccccchheehhhhhcccc-cccchHhhhhhhhhcCChH-HHHHHHHHHHHHcCCCcEEEEEecc
Confidence 589999999999986 589999996 578887543 4789999999999999999997643
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=99.72 E-value=5e-18 Score=156.34 Aligned_cols=99 Identities=22% Similarity=0.229 Sum_probs=87.5
Q ss_pred cCCCCCCEEEEEcCccCcccc---cCCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeecCCCCCCCCCccEEEeh
Q 016157 118 NSLPSGSLVLDAGCGNGKYLG---LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISI 186 (394)
Q Consensus 118 ~~l~~g~~VLDvGCG~G~~l~---~~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~lp~~~~~fD~Vi~~ 186 (394)
..+.||.+|||||||+|.++. ...+..|+|+|+|+.|++.|+++ +++++++|+.++. .+++||+|++.
T Consensus 29 ~~l~pg~~VLDiGCG~G~~~~~la~~~~~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~~~~-~~~~fD~v~~~ 107 (245)
T d1nkva_ 29 LRMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYV-ANEKCDVAACV 107 (245)
T ss_dssp TCCCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCC-CSSCEEEEEEE
T ss_pred cCCCCCCEEEEEcCCCCHHHHHHHHhcCCEEEEEecccchhhHHHHHHHHhhccccchhhhhHHhhcc-ccCceeEEEEE
Confidence 357899999999999998653 23467999999999999999886 3789999999984 57899999999
Q ss_pred hhhhhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 016157 187 AVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (394)
Q Consensus 187 ~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~ 220 (394)
.+++|+++ +..+++++.++|||||++++...
T Consensus 108 ~~~~~~~d---~~~~l~~~~r~LkPGG~l~i~~~ 138 (245)
T d1nkva_ 108 GATWIAGG---FAGAEELLAQSLKPGGIMLIGEP 138 (245)
T ss_dssp SCGGGTSS---SHHHHHHHTTSEEEEEEEEEEEE
T ss_pred ehhhccCC---HHHHHHHHHHHcCcCcEEEEEec
Confidence 99999998 78999999999999999999865
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.71 E-value=1.8e-17 Score=147.74 Aligned_cols=108 Identities=21% Similarity=0.234 Sum_probs=90.3
Q ss_pred HHHHHHcCCCCCCEEEEEcCccCccccc--CCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeecCCCCCCCCCccE
Q 016157 112 KVATFLNSLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFGDA 182 (394)
Q Consensus 112 ~l~~~l~~l~~g~~VLDvGCG~G~~l~~--~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~lp~~~~~fD~ 182 (394)
.+...+..+.+| +|||||||+|..+.. ..+.+|+|+|+|+.|++.|+++ ++++...|+..+++ +++||+
T Consensus 21 ~~~~~~~~~~~g-rvLDiGcG~G~~~~~la~~g~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~d~~~~~~-~~~fD~ 98 (198)
T d2i6ga1 21 DVLAAAKVVAPG-RTLDLGCGNGRNSLYLAANGYDVTAWDKNPASMANLERIKAAEGLDNLQTDLVDLNTLTF-DGEYDF 98 (198)
T ss_dssp HHHHHHTTSCSC-EEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCTTEEEEECCTTTCCC-CCCEEE
T ss_pred HHHHHcccCCCC-cEEEECCCCCHHHHHHHHHhhhhccccCcHHHHHHHHHHhhhccccchhhhheecccccc-cccccE
Confidence 345555556665 999999999997542 4578999999999999998765 46888999998876 688999
Q ss_pred EEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCc
Q 016157 183 AISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAV 222 (394)
Q Consensus 183 Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~ 222 (394)
|++..++||++..+ +..+|+++.++|+|||++++.++..
T Consensus 99 I~~~~~~~~~~~~~-~~~~l~~~~~~L~pgG~~~~~~~~~ 137 (198)
T d2i6ga1 99 ILSTVVMMFLEAQT-IPGLIANMQRCTKPGGYNLIVAAMD 137 (198)
T ss_dssp EEEESCGGGSCTTH-HHHHHHHHHHTEEEEEEEEEEEEBC
T ss_pred EEEeeeeecCCHHH-HHHHHHHHHHHcCCCcEEEEEEecC
Confidence 99999999998755 7899999999999999999987654
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.70 E-value=2.7e-17 Score=150.18 Aligned_cols=142 Identities=15% Similarity=0.094 Sum_probs=109.3
Q ss_pred CChHHHHHHHHHHHHhhccccccccccc-hHHHHHHHcCCCCCCEEEEEcCccCcccc--cCCCcEEEEEeCCHHHHHHH
Q 016157 82 STPELEKKYVHRVYDAIAPHFSSTRFAK-WPKVATFLNSLPSGSLVLDAGCGNGKYLG--LNPDCFFVGCDISPSLIKIC 158 (394)
Q Consensus 82 ~~~~~~~~~v~~~Yd~~a~~y~~~~~~~-~~~l~~~l~~l~~g~~VLDvGCG~G~~l~--~~~~~~v~gvD~S~~~l~~a 158 (394)
..+.+..+.+.+.|++-.-.|+.....+ ..+...-+..++++.+|||+|||+|..+. +..|++|+|+|+|+.+++.|
T Consensus 4 ~~~~~~~e~W~~~~~~~~~~w~~~~~~~~l~~~~~~~l~~~~~~rvLd~GCG~G~~a~~LA~~G~~V~gvD~S~~ai~~a 83 (229)
T d2bzga1 4 KNQVLTLEEWQDKWVNGKTAFHQEQGHQLLKKHLDTFLKGKSGLRVFFPLCGKAVEMKWFADRGHSVVGVEISELGIQEF 83 (229)
T ss_dssp TTCCCCHHHHHHHHHHTCCTTCCTTCCHHHHHHHHHHHTTCCSCEEEETTCTTCTHHHHHHHTTCEEEEECSCHHHHHHH
T ss_pred ccccCCHHHHHHHHccCCCCCccCCCCHHHHHHHHHhcCCCCCCEEEEeCCCCcHHHHHHHhCCCcEEEEeCCHHHHHHH
Confidence 3344556788999987655555432222 22333333346788999999999999754 25688999999999999998
Q ss_pred HHc------------------------CCeEEEeecCCCC-CCCCCccEEEehhhhhhcCChhHHHHHHHHHHhccccCc
Q 016157 159 VDR------------------------GHEVLVADAVNLP-YRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGS 213 (394)
Q Consensus 159 ~~~------------------------~i~~~~~D~~~lp-~~~~~fD~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG 213 (394)
+++ +++++++|+.+++ ...+.||+|+...+++|++... +..+++++.++|||||
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~~~~~~fd~i~~~~~l~~~~~~~-r~~~~~~~~~~LkpgG 162 (229)
T d2bzga1 84 FTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSIFDLPRTNIGKFDMIWDRGALVAINPGD-RKCYADTMFSLLGKKF 162 (229)
T ss_dssp HHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCGGGGGGSCCCCEEEEEESSSTTTSCGGG-HHHHHHHHHHTEEEEE
T ss_pred HHHhhccccccchhcccccceeeecCCcEEEEEcchhhccccccCceeEEEEEEEEEeccchh-hHHHHHHHHhhcCCcc
Confidence 864 3678999998875 5568999999999999998755 7899999999999999
Q ss_pred EEEEEEcCccc
Q 016157 214 LVLITVWAVEQ 224 (394)
Q Consensus 214 ~lli~~~~~~~ 224 (394)
++++.++...+
T Consensus 163 ~~~l~~~~~~~ 173 (229)
T d2bzga1 163 QYLLCVLSYDP 173 (229)
T ss_dssp EEEEEEEECCT
T ss_pred eEEEEEcccCC
Confidence 99988876554
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=99.70 E-value=1.4e-17 Score=151.51 Aligned_cols=104 Identities=13% Similarity=0.120 Sum_probs=88.8
Q ss_pred HHHcCCCCCCEEEEEcCccCccccc--CCCcEEEEEeCCHHHHHHHHHc---CCeEEEeecCCCCCCCCCccEEEehhhh
Q 016157 115 TFLNSLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR---GHEVLVADAVNLPYRSDFGDAAISIAVL 189 (394)
Q Consensus 115 ~~l~~l~~g~~VLDvGCG~G~~l~~--~~~~~v~gvD~S~~~l~~a~~~---~i~~~~~D~~~lp~~~~~fD~Vi~~~vl 189 (394)
.+....+ +.+|||||||+|.++.. ..+.+|+|+|+|+.+++.|+++ ++.++++|+.++++ +++||+|++..+|
T Consensus 14 ~~~~~~~-~~~VLDiGcG~G~~~~~l~~~g~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~~~~~~-~~~fD~I~~~~vl 91 (225)
T d2p7ia1 14 AFTPFFR-PGNLLELGSFKGDFTSRLQEHFNDITCVEASEEAISHAQGRLKDGITYIHSRFEDAQL-PRRYDNIVLTHVL 91 (225)
T ss_dssp HHGGGCC-SSCEEEESCTTSHHHHHHTTTCSCEEEEESCHHHHHHHHHHSCSCEEEEESCGGGCCC-SSCEEEEEEESCG
T ss_pred HhhhhCC-CCcEEEEeCCCcHHHHHHHHcCCeEEEEeCcHHHhhhhhccccccccccccccccccc-cccccccccccee
Confidence 3444444 55899999999998653 4467899999999999999987 68999999999876 5789999999999
Q ss_pred hhcCChhHHHHHHHHHH-hccccCcEEEEEEcCcc
Q 016157 190 HHLSTESRRKKAIEELV-RVVKKGSLVLITVWAVE 223 (394)
Q Consensus 190 ~hl~~~~~~~~~L~ei~-r~LkpGG~lli~~~~~~ 223 (394)
||+++ +..+|+++. ++|||||.+++.+++..
T Consensus 92 eh~~d---~~~~l~~i~~~~Lk~gG~l~i~~pn~~ 123 (225)
T d2p7ia1 92 EHIDD---PVALLKRINDDWLAEGGRLFLVCPNAN 123 (225)
T ss_dssp GGCSS---HHHHHHHHHHTTEEEEEEEEEEEECTT
T ss_pred EecCC---HHHHHHHHHHHhcCCCceEEEEeCCcc
Confidence 99998 789999998 89999999999987643
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=99.68 E-value=4.6e-17 Score=150.62 Aligned_cols=104 Identities=22% Similarity=0.158 Sum_probs=87.1
Q ss_pred CCCCCCEEEEEcCccCccccc---CCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeecCCCCC-CCCCccEEEeh
Q 016157 119 SLPSGSLVLDAGCGNGKYLGL---NPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPY-RSDFGDAAISI 186 (394)
Q Consensus 119 ~l~~g~~VLDvGCG~G~~l~~---~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~lp~-~~~~fD~Vi~~ 186 (394)
..+++.+|||||||+|..+.. .....|+|+|+|+.|++.|+++ ++.+.++|+...++ ..++||+|+|.
T Consensus 21 ~~~~~~~VLDlGCG~G~~~~~~~~~~~~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~~~fD~V~~~ 100 (252)
T d1ri5a_ 21 YTKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQ 100 (252)
T ss_dssp HCCTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEE
T ss_pred hCCCcCEEEEecccCcHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhcccccccceEEEEc
Confidence 467899999999999987542 2335899999999999999876 36789999987775 46789999999
Q ss_pred hhhhhcCC-hhHHHHHHHHHHhccccCcEEEEEEcCc
Q 016157 187 AVLHHLST-ESRRKKAIEELVRVVKKGSLVLITVWAV 222 (394)
Q Consensus 187 ~vl~hl~~-~~~~~~~L~ei~r~LkpGG~lli~~~~~ 222 (394)
.++||+.. .+....+|+++.++|||||+|+++++..
T Consensus 101 ~~l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~~~~~ 137 (252)
T d1ri5a_ 101 FSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSR 137 (252)
T ss_dssp SCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEECH
T ss_pred ceeeecCCCHHHHHHHHHHHhceeCCCCEEEEEecCH
Confidence 99999754 4557889999999999999999988753
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=99.68 E-value=2.8e-17 Score=144.50 Aligned_cols=105 Identities=18% Similarity=0.275 Sum_probs=89.0
Q ss_pred CCCCCCEEEEEcCccCccccc--CCCcEEEEEeCCHHHHHHHHHc-------------------CCeEEEeecCCCCC-C
Q 016157 119 SLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR-------------------GHEVLVADAVNLPY-R 176 (394)
Q Consensus 119 ~l~~g~~VLDvGCG~G~~l~~--~~~~~v~gvD~S~~~l~~a~~~-------------------~i~~~~~D~~~lp~-~ 176 (394)
.++||.+|||+|||+|..+.. ..|+.|+|+|+|+.|++.|+++ .+.++++|+.+++. .
T Consensus 17 ~~~~~~rvLd~GCG~G~~a~~la~~G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 96 (201)
T d1pjza_ 17 NVVPGARVLVPLCGKSQDMSWLSGQGYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARD 96 (201)
T ss_dssp CCCTTCEEEETTTCCSHHHHHHHHHCCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHHH
T ss_pred CCCCCCEEEEecCcCCHHHHHHHHcCCceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceeccccccccccc
Confidence 478899999999999997542 4688999999999999999985 24788999988873 3
Q ss_pred CCCccEEEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCccc
Q 016157 177 SDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQ 224 (394)
Q Consensus 177 ~~~fD~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~~~ 224 (394)
...||+|++..+++|++... ...+++++.++|||||++++..+....
T Consensus 97 ~~~~D~i~~~~~l~~l~~~~-~~~~~~~i~~~LkpgG~l~l~~~~~~~ 143 (201)
T d1pjza_ 97 IGHCAAFYDRAAMIALPADM-RERYVQHLEALMPQACSGLLITLEYDQ 143 (201)
T ss_dssp HHSEEEEEEESCGGGSCHHH-HHHHHHHHHHHSCSEEEEEEEEESSCS
T ss_pred ccceeEEEEEeeeEecchhh-hHHHHHHHHHhcCCCcEEEEEEccccc
Confidence 57899999999999998754 689999999999999999888765543
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.67 E-value=9e-17 Score=147.99 Aligned_cols=134 Identities=14% Similarity=0.139 Sum_probs=92.4
Q ss_pred HHHHHHHHHhhccccccccccch--HHHHHHHc-CCCCCCEEEEEcCccCcccc--cCCCc-EEEEEeCCHHHHHHHHHc
Q 016157 88 KKYVHRVYDAIAPHFSSTRFAKW--PKVATFLN-SLPSGSLVLDAGCGNGKYLG--LNPDC-FFVGCDISPSLIKICVDR 161 (394)
Q Consensus 88 ~~~v~~~Yd~~a~~y~~~~~~~~--~~l~~~l~-~l~~g~~VLDvGCG~G~~l~--~~~~~-~v~gvD~S~~~l~~a~~~ 161 (394)
.+|+..+|......+.......| +.+.+.+. ...+|.+|||||||+|.+.. ...+. .|+|+|+|+.|++.|+++
T Consensus 14 ~~Y~~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~vLDlGcG~G~~~~~~~~~~~~~v~giD~S~~~i~~a~~~ 93 (257)
T d2a14a1 14 RDYLATYYSFDGSPSPEAEMLKFNLECLHKTFGPGGLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKW 93 (257)
T ss_dssp HHHHHHHCCCCCSCCHHHHHHHHHHHHHHHHHSTTSCCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHH
T ss_pred HHHHHHHhCcCccccHHHHHHHHHHHHHHHHhcccCCCCCEEEEECCCCCHhHHHHhccccCcEEEecCCHHHHHHHHHH
Confidence 46777777665555443322222 22333332 34567899999999998643 23344 799999999999999875
Q ss_pred ----CCe---------------------------------EEEe----ecCCCCCCCCCccEEEehhhhhhcCCh-hHHH
Q 016157 162 ----GHE---------------------------------VLVA----DAVNLPYRSDFGDAAISIAVLHHLSTE-SRRK 199 (394)
Q Consensus 162 ----~i~---------------------------------~~~~----D~~~lp~~~~~fD~Vi~~~vl~hl~~~-~~~~ 199 (394)
... .... +....++..++||+|++..+|||+... +...
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~ 173 (257)
T d2a14a1 94 LKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYR 173 (257)
T ss_dssp HHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHH
T ss_pred HhhccccchhhhHHHHHHHhccccchHHHHHHHHhhhhhcccccccccccccccccCCcccEEeehhhHHHhcccHHHHH
Confidence 111 1111 122245678899999999999999743 3478
Q ss_pred HHHHHHHhccccCcEEEEEEcC
Q 016157 200 KAIEELVRVVKKGSLVLITVWA 221 (394)
Q Consensus 200 ~~L~ei~r~LkpGG~lli~~~~ 221 (394)
.+++++.++|||||.+++..+.
T Consensus 174 ~~l~~i~~~LkpGG~li~~~~~ 195 (257)
T d2a14a1 174 AALCNLASLLKPGGHLVTTVTL 195 (257)
T ss_dssp HHHHHHHTTEEEEEEEEEEEES
T ss_pred HHHHHHHhccCCCcEEEEEEec
Confidence 8999999999999999998753
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=99.65 E-value=1.7e-16 Score=149.37 Aligned_cols=99 Identities=25% Similarity=0.349 Sum_probs=86.1
Q ss_pred CCCCCCEEEEEcCccCccc----ccC-CCcEEEEEeCCHHHHHHHHHc------CCeEEEeecCCCCCCCCCccEEEehh
Q 016157 119 SLPSGSLVLDAGCGNGKYL----GLN-PDCFFVGCDISPSLIKICVDR------GHEVLVADAVNLPYRSDFGDAAISIA 187 (394)
Q Consensus 119 ~l~~g~~VLDvGCG~G~~l----~~~-~~~~v~gvD~S~~~l~~a~~~------~i~~~~~D~~~lp~~~~~fD~Vi~~~ 187 (394)
.+..+.+|||||||+|.++ ... .+..|+|+|+|+.+++.|+++ ++++.++|+.++++. ++||+|++..
T Consensus 24 ~~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~f~~~d~~~~~~~-~~fD~v~~~~ 102 (281)
T d2gh1a1 24 KITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIELN-DKYDIAICHA 102 (281)
T ss_dssp CCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSSEEEEEESCTTTCCCS-SCEEEEEEES
T ss_pred ccCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhccccccccccccccccccccccc-CCceEEEEeh
Confidence 4566789999999999863 223 467999999999999999876 468899999999875 5799999999
Q ss_pred hhhhcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 016157 188 VLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 221 (394)
Q Consensus 188 vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~ 221 (394)
++||+++ +..+|+++.++|||||.+++.++.
T Consensus 103 ~l~~~~d---~~~~l~~~~~~LkpgG~lii~~~~ 133 (281)
T d2gh1a1 103 FLLHMTT---PETMLQKMIHSVKKGGKIICFEPH 133 (281)
T ss_dssp CGGGCSS---HHHHHHHHHHTEEEEEEEEEEECC
T ss_pred hhhcCCC---HHHHHHHHHHHcCcCcEEEEEECC
Confidence 9999998 789999999999999999998854
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.64 E-value=9.3e-16 Score=144.71 Aligned_cols=102 Identities=23% Similarity=0.292 Sum_probs=78.9
Q ss_pred CCCCEEEEEcCccCcccc--cCCCcEEEEEeCCHHHHHHHHHc-----------CCeEEEeecCCCC---CCCCCccEEE
Q 016157 121 PSGSLVLDAGCGNGKYLG--LNPDCFFVGCDISPSLIKICVDR-----------GHEVLVADAVNLP---YRSDFGDAAI 184 (394)
Q Consensus 121 ~~g~~VLDvGCG~G~~l~--~~~~~~v~gvD~S~~~l~~a~~~-----------~i~~~~~D~~~lp---~~~~~fD~Vi 184 (394)
.++.+|||+|||+|.++. +..+.+|+|+|+|+.||+.|+++ ...+..+++..++ ...+.||+|+
T Consensus 55 ~~~~~vLD~GcG~G~~~~~la~~g~~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~v~ 134 (292)
T d1xvaa_ 55 HGCHRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAVI 134 (292)
T ss_dssp TTCCEEEESSCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCCTTCEEEEE
T ss_pred cCCCEEEEecCCCcHHHHHHHHcCCeeeeccCchHHHHHHHHHHHhcccccccceeeeeeccccccccccCCCCCceEEE
Confidence 456799999999999753 24567999999999999999875 2345555554322 1256899998
Q ss_pred eh-hhhhhcCCh----hHHHHHHHHHHhccccCcEEEEEEcCc
Q 016157 185 SI-AVLHHLSTE----SRRKKAIEELVRVVKKGSLVLITVWAV 222 (394)
Q Consensus 185 ~~-~vl~hl~~~----~~~~~~L~ei~r~LkpGG~lli~~~~~ 222 (394)
+. .+++|+++. +.+..+|+++.++|||||+|++..+..
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~ 177 (292)
T d1xvaa_ 135 CLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRNY 177 (292)
T ss_dssp ECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEEEECH
T ss_pred EecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEEeecCH
Confidence 76 589999753 347889999999999999999987653
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=99.64 E-value=1.8e-16 Score=148.31 Aligned_cols=94 Identities=34% Similarity=0.427 Sum_probs=82.6
Q ss_pred CCCCCEEEEEcCccCcccc----cCCCcEEEEEeCCHHHHHHHHHc--CCeEEEeecCCCCCCCCCccEEEehhhhhhcC
Q 016157 120 LPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR--GHEVLVADAVNLPYRSDFGDAAISIAVLHHLS 193 (394)
Q Consensus 120 l~~g~~VLDvGCG~G~~l~----~~~~~~v~gvD~S~~~l~~a~~~--~i~~~~~D~~~lp~~~~~fD~Vi~~~vl~hl~ 193 (394)
..++.+|||||||+|.++. ..++..++|+|+|+.|++.|+++ ++.++++|+.++|+++++||+|++..+++|
T Consensus 82 ~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~-- 159 (268)
T d1p91a_ 82 DDKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYAPCK-- 159 (268)
T ss_dssp CTTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEEEEESCCCC--
T ss_pred CCCCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhcccccccceeeehhhccCCCCCEEEEeecCCHHH--
Confidence 3466799999999999753 46788999999999999999987 789999999999999999999999887765
Q ss_pred ChhHHHHHHHHHHhccccCcEEEEEEcCcc
Q 016157 194 TESRRKKAIEELVRVVKKGSLVLITVWAVE 223 (394)
Q Consensus 194 ~~~~~~~~L~ei~r~LkpGG~lli~~~~~~ 223 (394)
++++.|+|||||++++.++...
T Consensus 160 --------~~e~~rvLkpgG~l~~~~p~~~ 181 (268)
T d1p91a_ 160 --------AEELARVVKPGGWVITATPGPR 181 (268)
T ss_dssp --------HHHHHHHEEEEEEEEEEEECTT
T ss_pred --------HHHHHHHhCCCcEEEEEeeCCc
Confidence 4678999999999999998653
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=99.63 E-value=2.3e-16 Score=146.54 Aligned_cols=107 Identities=13% Similarity=0.083 Sum_probs=90.0
Q ss_pred HHHHHcCCC--CCCEEEEEcCccCccccc--CC-CcEEEEEeCCHHHHHHHHHc-----CCeEEEeecCCCCCCCCCccE
Q 016157 113 VATFLNSLP--SGSLVLDAGCGNGKYLGL--NP-DCFFVGCDISPSLIKICVDR-----GHEVLVADAVNLPYRSDFGDA 182 (394)
Q Consensus 113 l~~~l~~l~--~g~~VLDvGCG~G~~l~~--~~-~~~v~gvD~S~~~l~~a~~~-----~i~~~~~D~~~lp~~~~~fD~ 182 (394)
...++..++ ++.+|||+|||+|.++.. .+ ...|+|+|+|+.|++.|+++ .++++++|+.++++.+++||+
T Consensus 82 s~~fl~~l~~~~~~~vLD~GcG~G~~t~~ll~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD~ 161 (254)
T d1xtpa_ 82 SRNFIASLPGHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTYDL 161 (254)
T ss_dssp HHHHHHTSTTCCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSCEEE
T ss_pred HHHHHhhCCCCCCCeEEEecccCChhhHHHHhhcCceEEEEcCCHHHHHhhhccccccccceeEEccccccccCCCccce
Confidence 345666554 457999999999987542 12 34899999999999999987 368899999999998999999
Q ss_pred EEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 016157 183 AISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (394)
Q Consensus 183 Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~ 220 (394)
|++..+++|+++++ ..++|+++.++|||||.++|...
T Consensus 162 I~~~~vl~hl~d~d-~~~~l~~~~~~LkpgG~iii~e~ 198 (254)
T d1xtpa_ 162 IVIQWTAIYLTDAD-FVKFFKHCQQALTPNGYIFFKEN 198 (254)
T ss_dssp EEEESCGGGSCHHH-HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EEeeccccccchhh-hHHHHHHHHHhcCCCcEEEEEec
Confidence 99999999998754 67899999999999999999764
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.59 E-value=8.2e-15 Score=136.39 Aligned_cols=133 Identities=17% Similarity=0.146 Sum_probs=90.6
Q ss_pred HHHHHHHHHhhcccccccc-ccch--HHHHHHH-cCCCCCCEEEEEcCccCcccc--cCC-CcEEEEEeCCHHHHHHHHH
Q 016157 88 KKYVHRVYDAIAPHFSSTR-FAKW--PKVATFL-NSLPSGSLVLDAGCGNGKYLG--LNP-DCFFVGCDISPSLIKICVD 160 (394)
Q Consensus 88 ~~~v~~~Yd~~a~~y~~~~-~~~~--~~l~~~l-~~l~~g~~VLDvGCG~G~~l~--~~~-~~~v~gvD~S~~~l~~a~~ 160 (394)
.+|+..+|......+...+ ...| +.+.+.+ .....|.+|||||||+|.+.. ..+ ..+|+|+|+|+.|++.+++
T Consensus 16 ~~Y~~~~y~~~~~~~~~~~~~~~~~~~~~~~~f~~g~~~g~~vLDiGcG~g~~~~~~~~~~~~~v~~~D~S~~~i~~~~~ 95 (263)
T d2g72a1 16 RAYLRNNYAPPRGDLCNPNGVGPWKLRCLAQTFATGEVSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGR 95 (263)
T ss_dssp HHHHHHHHSTTTTCCSSTTSHHHHHHHHHHHHHHTSCSCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHH
T ss_pred HHHHHHHhCcCcccchhhhhhhhhHHHHHHHHcCCCCCCCcEEEEeccCCCHHHHHHhcccCCeEEEEeCCHHHHHHHHH
Confidence 3577777765444432221 1122 2223322 234567899999999997632 223 3489999999999999986
Q ss_pred c----C---------------------------------CeEEEeecCC------CCCCCCCccEEEehhhhhhcCC-hh
Q 016157 161 R----G---------------------------------HEVLVADAVN------LPYRSDFGDAAISIAVLHHLST-ES 196 (394)
Q Consensus 161 ~----~---------------------------------i~~~~~D~~~------lp~~~~~fD~Vi~~~vl~hl~~-~~ 196 (394)
+ . ..++.+|+.. .+...++||+|++++++||++. .+
T Consensus 96 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~ 175 (263)
T d2g72a1 96 WLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLA 175 (263)
T ss_dssp HHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHH
T ss_pred HHhcCcccccchhhhhhhhhhccccchhhhhHHHhhhhhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHH
Confidence 4 0 1234456543 2244578999999999999963 34
Q ss_pred HHHHHHHHHHhccccCcEEEEEEc
Q 016157 197 RRKKAIEELVRVVKKGSLVLITVW 220 (394)
Q Consensus 197 ~~~~~L~ei~r~LkpGG~lli~~~ 220 (394)
....+|+++.++|||||.|++..+
T Consensus 176 ~~~~~l~~~~~~LkPGG~li~~~~ 199 (263)
T d2g72a1 176 SFQRALDHITTLLRPGGHLLLIGA 199 (263)
T ss_dssp HHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHcCCCCEEEEecc
Confidence 478999999999999999998764
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.56 E-value=2.8e-15 Score=141.07 Aligned_cols=100 Identities=19% Similarity=0.303 Sum_probs=83.1
Q ss_pred CCCCCCEEEEEcCccCccccc---CCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeecCCCCCCCCCccEEEehh
Q 016157 119 SLPSGSLVLDAGCGNGKYLGL---NPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISIA 187 (394)
Q Consensus 119 ~l~~g~~VLDvGCG~G~~l~~---~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~lp~~~~~fD~Vi~~~ 187 (394)
.++||.+|||||||+|.++.. ..+..|+|+|+|+++++.|+++ .+.+...|..++ +++||.|+++.
T Consensus 49 ~l~~g~~VLDiGCG~G~~a~~~a~~~g~~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~~~---~~~fD~i~si~ 125 (280)
T d2fk8a1 49 DLKPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDF---AEPVDRIVSIE 125 (280)
T ss_dssp CCCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGC---CCCCSEEEEES
T ss_pred CCCCCCEEEEecCCchHHHHHHHHhCceeEEEecchHHHHHHHHHHHHhhccccchhhhhhhhhhh---ccchhhhhHhh
Confidence 468999999999999997642 4478999999999999999886 245566666654 47899999999
Q ss_pred hhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCc
Q 016157 188 VLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAV 222 (394)
Q Consensus 188 vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~ 222 (394)
+++|+.... ...+++++.++|||||++++.....
T Consensus 126 ~~eh~~~~~-~~~~f~~i~~~LkpgG~~~i~~i~~ 159 (280)
T d2fk8a1 126 AFEHFGHEN-YDDFFKRCFNIMPADGRMTVQSSVS 159 (280)
T ss_dssp CGGGTCGGG-HHHHHHHHHHHSCTTCEEEEEEEEC
T ss_pred HHHHhhhhh-HHHHHHHHHhccCCCceEEEEEeec
Confidence 999998643 6899999999999999999986543
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.54 E-value=5.2e-15 Score=139.88 Aligned_cols=103 Identities=17% Similarity=0.260 Sum_probs=84.4
Q ss_pred CCCCCCEEEEEcCccCcccc---cCCCcEEEEEeCCHHHHHHHHHc----C----CeEEEeecCCCCCCCCCccEEEehh
Q 016157 119 SLPSGSLVLDAGCGNGKYLG---LNPDCFFVGCDISPSLIKICVDR----G----HEVLVADAVNLPYRSDFGDAAISIA 187 (394)
Q Consensus 119 ~l~~g~~VLDvGCG~G~~l~---~~~~~~v~gvD~S~~~l~~a~~~----~----i~~~~~D~~~lp~~~~~fD~Vi~~~ 187 (394)
.+++|.+|||||||.|.++. ...++.|+|+++|++.++.|+++ + +.+...|. ++.+++||.|+|+.
T Consensus 58 ~l~~G~~VLDiGCG~G~~~~~~a~~~g~~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~~d~---~~~~~~fD~i~sie 134 (291)
T d1kpia_ 58 NLEPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGW---EEFDEPVDRIVSLG 134 (291)
T ss_dssp CCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHSCCSSCEEEEECCG---GGCCCCCSEEEEES
T ss_pred CCCCCCEEEEecCcchHHHHHHHHhcCcceeeccchHHHHHHHHHHHHhhccchhhhhhhhcc---cccccccceEeech
Confidence 47899999999999998754 24468999999999999988876 2 34445554 45578999999999
Q ss_pred hhhhcCCh------hHHHHHHHHHHhccccCcEEEEEEcCccc
Q 016157 188 VLHHLSTE------SRRKKAIEELVRVVKKGSLVLITVWAVEQ 224 (394)
Q Consensus 188 vl~hl~~~------~~~~~~L~ei~r~LkpGG~lli~~~~~~~ 224 (394)
+++|+.+. +....+++++.++|||||++++.++....
T Consensus 135 ~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~i~~~~ 177 (291)
T d1kpia_ 135 AFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIPD 177 (291)
T ss_dssp CGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEEEEECCC
T ss_pred hHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEEEEeccC
Confidence 99999863 23579999999999999999999887644
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.52 E-value=2.2e-15 Score=140.95 Aligned_cols=100 Identities=14% Similarity=-0.028 Sum_probs=78.2
Q ss_pred CCCCEEEEEcCccCcccc--------cCC--CcEEEEEeCCHHHHHHHHHc-----CC-----eEEEeecC------CCC
Q 016157 121 PSGSLVLDAGCGNGKYLG--------LNP--DCFFVGCDISPSLIKICVDR-----GH-----EVLVADAV------NLP 174 (394)
Q Consensus 121 ~~g~~VLDvGCG~G~~l~--------~~~--~~~v~gvD~S~~~l~~a~~~-----~i-----~~~~~D~~------~lp 174 (394)
++..+|||||||+|.++. ..+ ...++|+|+|+.|++.|+++ ++ .+...++. ..+
T Consensus 39 ~~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (280)
T d1jqea_ 39 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLEK 118 (280)
T ss_dssp CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHHHHTTS
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhhhcchhccc
Confidence 444589999999998632 123 34789999999999999876 22 23333332 134
Q ss_pred CCCCCccEEEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCcc
Q 016157 175 YRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVE 223 (394)
Q Consensus 175 ~~~~~fD~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~~ 223 (394)
..+++||+|++..+|||+++ +..+|+++.++|||||.+++.++...
T Consensus 119 ~~~~~fD~I~~~~~l~~~~d---~~~~l~~l~~~LkpgG~l~i~~~~~~ 164 (280)
T d1jqea_ 119 KELQKWDFIHMIQMLYYVKD---IPATLKFFHSLLGTNAKMLIIVVSGS 164 (280)
T ss_dssp SSCCCEEEEEEESCGGGCSC---HHHHHHHHHHTEEEEEEEEEEEECTT
T ss_pred CCCCceeEEEEccceecCCC---HHHHHHHHHhhCCCCCEEEEEEecCc
Confidence 56789999999999999998 88999999999999999999987654
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.51 E-value=1.2e-14 Score=136.91 Aligned_cols=101 Identities=22% Similarity=0.271 Sum_probs=86.6
Q ss_pred CCCCCCEEEEEcCccCcccc---cCCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeecCCCCCCCCCccEEEehh
Q 016157 119 SLPSGSLVLDAGCGNGKYLG---LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISIA 187 (394)
Q Consensus 119 ~l~~g~~VLDvGCG~G~~l~---~~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~lp~~~~~fD~Vi~~~ 187 (394)
.++||.+|||||||.|.++. ...+++|+|+++|+..++.|+++ .+++..+|..+++ ++||.|+++.
T Consensus 59 ~l~~G~~VLDiGCG~G~~a~~~a~~~g~~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~~~~~---~~fD~i~si~ 135 (285)
T d1kpga_ 59 GLQPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFD---EPVDRIVSIG 135 (285)
T ss_dssp TCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCC---CCCSEEEEES
T ss_pred CCCCCCEEEEecCcchHHHHHHHhcCCcceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhhhccc---ccccceeeeh
Confidence 47899999999999998653 24578999999999999999876 4678888887774 6899999999
Q ss_pred hhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCcc
Q 016157 188 VLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVE 223 (394)
Q Consensus 188 vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~~ 223 (394)
+++|+.... ...+++++.++|||||++++.++...
T Consensus 136 ~~eh~~~~~-~~~~~~~~~r~LkpgG~~~l~~i~~~ 170 (285)
T d1kpga_ 136 AFEHFGHER-YDAFFSLAHRLLPADGVMLLHTITGL 170 (285)
T ss_dssp CGGGTCTTT-HHHHHHHHHHHSCTTCEEEEEEEEEC
T ss_pred hhhhcCchh-HHHHHHHHHhhcCCCCcEEEEEEecc
Confidence 999997643 57899999999999999999887643
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.49 E-value=1.7e-14 Score=134.26 Aligned_cols=104 Identities=16% Similarity=0.248 Sum_probs=90.8
Q ss_pred HHHcCCCCCCEEEEEcCccCcccc-----cCCCcEEEEEeCCHHHHHHHHHc----------CCeEEEeecCCCCCCCCC
Q 016157 115 TFLNSLPSGSLVLDAGCGNGKYLG-----LNPDCFFVGCDISPSLIKICVDR----------GHEVLVADAVNLPYRSDF 179 (394)
Q Consensus 115 ~~l~~l~~g~~VLDvGCG~G~~l~-----~~~~~~v~gvD~S~~~l~~a~~~----------~i~~~~~D~~~lp~~~~~ 179 (394)
.....+.||++|||+|||+|.++. ..+...|+++|+++++++.|+++ ++.+.++|+.+.++++++
T Consensus 89 i~~l~i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~~~~~~~~~ 168 (264)
T d1i9ga_ 89 VHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSELPDGS 168 (264)
T ss_dssp HHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCCCTTC
T ss_pred HHHhCCCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEecccccccccCCC
Confidence 334568999999999999999742 26888999999999999999875 578999999999999999
Q ss_pred ccEEEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCccchh
Q 016157 180 GDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQED 226 (394)
Q Consensus 180 fD~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~~~~~ 226 (394)
||.|++ |+++ +..++.++.++|||||+++++.++.+|..
T Consensus 169 fDaV~l-----dlp~---P~~~l~~~~~~LkpGG~lv~~~P~i~Qv~ 207 (264)
T d1i9ga_ 169 VDRAVL-----DMLA---PWEVLDAVSRLLVAGGVLMVYVATVTQLS 207 (264)
T ss_dssp EEEEEE-----ESSC---GGGGHHHHHHHEEEEEEEEEEESSHHHHH
T ss_pred cceEEE-----ecCC---HHHHHHHHHhccCCCCEEEEEeCccChHH
Confidence 999986 6888 78999999999999999999999888753
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=99.48 E-value=3.8e-14 Score=130.92 Aligned_cols=106 Identities=17% Similarity=0.170 Sum_probs=85.2
Q ss_pred HHHHHHcCCCCCCEEEEEcCccCccc----ccCCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeecCCCCCCCCC
Q 016157 112 KVATFLNSLPSGSLVLDAGCGNGKYL----GLNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDF 179 (394)
Q Consensus 112 ~l~~~l~~l~~g~~VLDvGCG~G~~l----~~~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~lp~~~~~ 179 (394)
.+...+ .+....+|||||||+|.++ ...|+..++++|+ +.+++.++++ +++++.+|+.+. . ...
T Consensus 71 ~~~~~~-d~~~~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~rv~~~~~D~~~~-~-~~~ 146 (253)
T d1tw3a2 71 APAAAY-DWTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFEP-L-PRK 146 (253)
T ss_dssp HHHHHS-CCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTSC-C-SSC
T ss_pred HHHhhc-CCccCCEEEEeCCCCCHHHHHHHHhcceeEEEEccC-HHHHHHHHHHHHHhhcccchhhccccchhh-c-ccc
Confidence 344333 3556689999999999875 3478899999998 5688888765 478999998763 2 356
Q ss_pred ccEEEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCc
Q 016157 180 GDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAV 222 (394)
Q Consensus 180 fD~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~ 222 (394)
||+|++..+|||+++++ ..++|++++++|||||+++|.....
T Consensus 147 ~D~v~~~~vlh~~~d~~-~~~~L~~~~~~LkPGG~l~i~e~~~ 188 (253)
T d1tw3a2 147 ADAIILSFVLLNWPDHD-AVRILTRCAEALEPGGRILIHERDD 188 (253)
T ss_dssp EEEEEEESCGGGSCHHH-HHHHHHHHHHTEEEEEEEEEEECCB
T ss_pred hhheeeccccccCCchh-hHHHHHHHHHhcCCCcEEEEEeccC
Confidence 99999999999998754 6789999999999999999987644
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.46 E-value=3.5e-14 Score=125.24 Aligned_cols=100 Identities=16% Similarity=0.140 Sum_probs=83.9
Q ss_pred cCCCCCCEEEEEcCccCcccc--cCCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeecCCCCCCCCCccEEEehh
Q 016157 118 NSLPSGSLVLDAGCGNGKYLG--LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISIA 187 (394)
Q Consensus 118 ~~l~~g~~VLDvGCG~G~~l~--~~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~lp~~~~~fD~Vi~~~ 187 (394)
..+.+|.+|||+|||+|.++. .....+|+|+|+++.+++.|+++ +++++++|+.+.+.....||+|++..
T Consensus 29 l~~~~g~~VLDiGcGsG~~s~~lA~~~~~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~~~~~~~~~D~v~~~~ 108 (186)
T d1l3ia_ 29 AEPGKNDVAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKIPDIDIAVVGG 108 (186)
T ss_dssp HCCCTTCEEEEESCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTSCCEEEEEESC
T ss_pred cCCCCCCEEEEEECCeEcccccccccceEEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchhhcccccCCcCEEEEeC
Confidence 367899999999999998743 24456999999999999999986 57899999998877778999999987
Q ss_pred hhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCcc
Q 016157 188 VLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVE 223 (394)
Q Consensus 188 vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~~ 223 (394)
..++ ...+++.+.+.|||||++++.....+
T Consensus 109 ~~~~------~~~~~~~~~~~LkpgG~lvi~~~~~e 138 (186)
T d1l3ia_ 109 SGGE------LQEILRIIKDKLKPGGRIIVTAILLE 138 (186)
T ss_dssp CTTC------HHHHHHHHHHTEEEEEEEEEEECBHH
T ss_pred cccc------chHHHHHHHHHhCcCCEEEEEeeccc
Confidence 6554 46789999999999999998875544
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.45 E-value=3e-14 Score=128.32 Aligned_cols=100 Identities=15% Similarity=0.053 Sum_probs=78.4
Q ss_pred CCCCCCEEEEEcCccCcccc----cCCCcEEEEEeCCHHHHHHHHHc-----CCeEEEeecCCCCCCCCCccEEEe-hhh
Q 016157 119 SLPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR-----GHEVLVADAVNLPYRSDFGDAAIS-IAV 188 (394)
Q Consensus 119 ~l~~g~~VLDvGCG~G~~l~----~~~~~~v~gvD~S~~~l~~a~~~-----~i~~~~~D~~~lp~~~~~fD~Vi~-~~v 188 (394)
.++||.+|||+|||+|..+. ..+...|+|+|+|+.|++.|+++ ++.++.+|+...+.....+|.+.. ...
T Consensus 53 ~lkpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~vd~v~~~ 132 (209)
T d1nt2a_ 53 KLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIVEKVDLIYQD 132 (209)
T ss_dssp CCCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTCCCEEEEEEC
T ss_pred CCCCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhccCCceEEEeeccCccccccccceEEEEEec
Confidence 47899999999999998643 35667999999999999988775 788999999887654544444432 234
Q ss_pred hhhcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 016157 189 LHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 221 (394)
Q Consensus 189 l~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~ 221 (394)
+.|... +..+++++.++|||||++++..++
T Consensus 133 ~~~~~~---~~~~l~~~~~~LkpgG~l~i~~~~ 162 (209)
T d1nt2a_ 133 IAQKNQ---IEILKANAEFFLKEKGEVVIMVKA 162 (209)
T ss_dssp CCSTTH---HHHHHHHHHHHEEEEEEEEEEEEH
T ss_pred ccChhh---HHHHHHHHHHHhccCCeEEEEEEc
Confidence 445444 788999999999999999998754
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.45 E-value=4.7e-14 Score=128.83 Aligned_cols=100 Identities=15% Similarity=0.203 Sum_probs=83.6
Q ss_pred CCCCCCEEEEEcCccCcccc----cCCCcEEEEEeCCHHHHHHHHHc-----CCeEEEeecCCCC-CCCCCccEEEehhh
Q 016157 119 SLPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR-----GHEVLVADAVNLP-YRSDFGDAAISIAV 188 (394)
Q Consensus 119 ~l~~g~~VLDvGCG~G~~l~----~~~~~~v~gvD~S~~~l~~a~~~-----~i~~~~~D~~~lp-~~~~~fD~Vi~~~v 188 (394)
.++||.+|||+|||+|..+. ..++..|+|+|+|+.|++.++++ ++..+.+|....+ +.+..+|++++...
T Consensus 71 ~ikpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~v~~i~~~ 150 (230)
T d1g8sa_ 71 PIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIVEKVDVIYED 150 (230)
T ss_dssp CCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTCCCEEEEEEC
T ss_pred CCCCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhhhcccceEEEeeccCcccccccceeEEeecc
Confidence 36799999999999998643 36778999999999999999876 5677888887654 55678888888888
Q ss_pred hhhcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 016157 189 LHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 221 (394)
Q Consensus 189 l~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~ 221 (394)
++|..+ +..++.++.+.|||||.+++..+.
T Consensus 151 ~~~~~~---~~~~l~~~~r~LKpgG~~~i~~k~ 180 (230)
T d1g8sa_ 151 VAQPNQ---AEILIKNAKWFLKKGGYGMIAIKA 180 (230)
T ss_dssp CCSTTH---HHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred ccchHH---HHHHHHHHHHhcccCceEEEEeec
Confidence 887765 788999999999999999998754
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.45 E-value=9.2e-14 Score=123.20 Aligned_cols=100 Identities=17% Similarity=0.160 Sum_probs=81.1
Q ss_pred CCCCCCEEEEEcCccCcccc--cCCCcEEEEEeCCHHHHHHHHHc---------CCeEEEeecCCCCCCCCCccEEEehh
Q 016157 119 SLPSGSLVLDAGCGNGKYLG--LNPDCFFVGCDISPSLIKICVDR---------GHEVLVADAVNLPYRSDFGDAAISIA 187 (394)
Q Consensus 119 ~l~~g~~VLDvGCG~G~~l~--~~~~~~v~gvD~S~~~l~~a~~~---------~i~~~~~D~~~lp~~~~~fD~Vi~~~ 187 (394)
.+.++.+|||+|||+|.++. ......|+|+|+|+.+++.|+++ .+++..+|+.+ ++++++||+|+++.
T Consensus 49 ~~~~~~~VLDiGcG~G~~~~~la~~~~~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~-~~~~~~fD~Ii~~~ 127 (194)
T d1dusa_ 49 VVDKDDDILDLGCGYGVIGIALADEVKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYE-NVKDRKYNKIITNP 127 (194)
T ss_dssp CCCTTCEEEEETCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTT-TCTTSCEEEEEECC
T ss_pred CcCCCCeEEEEeecCChhHHHHHhhccccceeeeccccchhHHHHHHHhCCccceEEEEEcchhh-hhccCCceEEEEcc
Confidence 35678899999999998642 23445899999999999999875 36888999887 56688999999998
Q ss_pred hhhhcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 016157 188 VLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 221 (394)
Q Consensus 188 vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~ 221 (394)
++|+..+ ....+++++.++|||||.+++....
T Consensus 128 p~~~~~~--~~~~~l~~~~~~LkpgG~l~i~~~~ 159 (194)
T d1dusa_ 128 PIRAGKE--VLHRIIEEGKELLKDNGEIWVVIQT 159 (194)
T ss_dssp CSTTCHH--HHHHHHHHHHHHEEEEEEEEEEEES
T ss_pred cEEecch--hhhhHHHHHHHhcCcCcEEEEEEeC
Confidence 8876543 2478899999999999999886543
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=99.44 E-value=3.3e-14 Score=131.72 Aligned_cols=98 Identities=17% Similarity=0.104 Sum_probs=79.1
Q ss_pred cCCCCCCEEEEEcCccCcccc--cCCCcEEEEEeCCHHHHHHHHHc------CCeEEEeecCCCCCCCCCccEEEehhhh
Q 016157 118 NSLPSGSLVLDAGCGNGKYLG--LNPDCFFVGCDISPSLIKICVDR------GHEVLVADAVNLPYRSDFGDAAISIAVL 189 (394)
Q Consensus 118 ~~l~~g~~VLDvGCG~G~~l~--~~~~~~v~gvD~S~~~l~~a~~~------~i~~~~~D~~~lp~~~~~fD~Vi~~~vl 189 (394)
....+|.+|||+|||+|.++. ...+.+|+|+|+|+.|++.|+++ ..+++++|+.+. ++.++||+|+++...
T Consensus 116 ~~~~~g~~VLDiGcGsG~l~i~aa~~g~~V~gvDis~~av~~A~~na~~n~~~~~~~~~d~~~~-~~~~~fD~V~ani~~ 194 (254)
T d2nxca1 116 RHLRPGDKVLDLGTGSGVLAIAAEKLGGKALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAA-LPFGPFDLLVANLYA 194 (254)
T ss_dssp HHCCTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHHH-GGGCCEEEEEEECCH
T ss_pred hhcCccCEEEEcccchhHHHHHHHhcCCEEEEEECChHHHHHHHHHHHHcCCceeEEecccccc-ccccccchhhhcccc
Confidence 346789999999999998743 24567999999999999999976 467888887753 456899999997655
Q ss_pred hhcCChhHHHHHHHHHHhccccCcEEEEEEcCc
Q 016157 190 HHLSTESRRKKAIEELVRVVKKGSLVLITVWAV 222 (394)
Q Consensus 190 ~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~ 222 (394)
+. +..+++++.++|||||+++++.+..
T Consensus 195 ~~------l~~l~~~~~~~LkpGG~lilSgil~ 221 (254)
T d2nxca1 195 EL------HAALAPRYREALVPGGRALLTGILK 221 (254)
T ss_dssp HH------HHHHHHHHHHHEEEEEEEEEEEEEG
T ss_pred cc------HHHHHHHHHHhcCCCcEEEEEecch
Confidence 54 4678899999999999999976543
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.44 E-value=1.6e-14 Score=131.52 Aligned_cols=96 Identities=14% Similarity=0.013 Sum_probs=76.6
Q ss_pred CCCCEEEEEcCccCccccc---CCCcEEEEEeCCHHHHHHHHHc------CCeEEEeecCC--CCCCCCCccEEE-----
Q 016157 121 PSGSLVLDAGCGNGKYLGL---NPDCFFVGCDISPSLIKICVDR------GHEVLVADAVN--LPYRSDFGDAAI----- 184 (394)
Q Consensus 121 ~~g~~VLDvGCG~G~~l~~---~~~~~v~gvD~S~~~l~~a~~~------~i~~~~~D~~~--lp~~~~~fD~Vi----- 184 (394)
.+|.+|||||||+|..+.. .....++|+|+|+.+++.|+++ ++.++..|+.. .++++++||.|+
T Consensus 52 ~~g~~VLdIGcG~G~~a~~~a~~~~~~v~~id~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~fD~~~ 131 (229)
T d1zx0a1 52 SKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTYP 131 (229)
T ss_dssp TTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCCC
T ss_pred cCCCeEEEeeccchHHHHHHHHcCCCeEEEeCCCHHHHHHHHHHhhhcccccccccccccccccccccccccceeecccc
Confidence 6788999999999986542 3345899999999999999987 34566666654 346678888887
Q ss_pred ehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 016157 185 SIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 185 ~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~ 219 (394)
+...++|+.+ +..+++++.|+|||||+|++..
T Consensus 132 ~~~~~~~~~~---~~~~~~~~~r~LkpGG~~~~~~ 163 (229)
T d1zx0a1 132 LSEETWHTHQ---FNFIKNHAFRLLKPGGVLTYCN 163 (229)
T ss_dssp CBGGGTTTHH---HHHHHHTHHHHEEEEEEEEECC
T ss_pred cccccccccC---HHHHHHHHHHHcCCCcEEEEEe
Confidence 5677788776 7899999999999999988743
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=99.40 E-value=2.7e-13 Score=125.56 Aligned_cols=98 Identities=23% Similarity=0.219 Sum_probs=81.8
Q ss_pred CCCCCEEEEEcCccCcccc----cCCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeecCCCCCCCCCccEEEehh
Q 016157 120 LPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISIA 187 (394)
Q Consensus 120 l~~g~~VLDvGCG~G~~l~----~~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~lp~~~~~fD~Vi~~~ 187 (394)
+....+|||||||+|.++. ..|+..++++|+ +.+++.++++ .+.++.+|+.. +.+ ..||+|++..
T Consensus 79 ~~~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~~~~~~~~ri~~~~~d~~~-~~p-~~~D~v~~~~ 155 (256)
T d1qzza2 79 WSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFK-PLP-VTADVVLLSF 155 (256)
T ss_dssp CTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTS-CCS-CCEEEEEEES
T ss_pred CccCCEEEEECCCCCHHHHHHHHhhcCcEEEEecC-hHHHHHHHHHHhhcCCcceeeeeeeeccc-ccc-ccchhhhccc
Confidence 4566899999999999753 478999999998 7788888765 47888888875 443 4599999999
Q ss_pred hhhhcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 016157 188 VLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 221 (394)
Q Consensus 188 vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~ 221 (394)
+|||+++++ ..++|++++++|||||+++|..+.
T Consensus 156 vLh~~~d~~-~~~lL~~i~~~LkpgG~llI~d~~ 188 (256)
T d1qzza2 156 VLLNWSDED-ALTILRGCVRALEPGGRLLVLDRA 188 (256)
T ss_dssp CGGGSCHHH-HHHHHHHHHHHEEEEEEEEEEECC
T ss_pred cccccCcHH-HHHHHHHHHhhcCCcceeEEEEec
Confidence 999998754 678999999999999999998764
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=99.40 E-value=1.6e-13 Score=123.75 Aligned_cols=92 Identities=16% Similarity=0.195 Sum_probs=78.9
Q ss_pred CCCCCCEEEEEcCccCcccc-----cCCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeecCCCCCCCCCccEEEeh
Q 016157 119 SLPSGSLVLDAGCGNGKYLG-----LNPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFGDAAISI 186 (394)
Q Consensus 119 ~l~~g~~VLDvGCG~G~~l~-----~~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~lp~~~~~fD~Vi~~ 186 (394)
.+++|.+|||||||+|.++. ..+...|+++|+++.+++.|+++ ++.++.+|+.+.++.+++||+|++.
T Consensus 72 ~l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~d~~~~~~~~~~fD~I~~~ 151 (213)
T d1dl5a1 72 GLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEFSPYDVIFVT 151 (213)
T ss_dssp TCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEEEEEEC
T ss_pred hccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcccccccccCchHHccccccchhhhhhh
Confidence 47899999999999999743 25678999999999999999986 5678899998877778899999999
Q ss_pred hhhhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 016157 187 AVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 187 ~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~ 219 (394)
++++|+++ ++.+.|||||++++.+
T Consensus 152 ~~~~~~p~---------~l~~~LkpGG~lv~pv 175 (213)
T d1dl5a1 152 VGVDEVPE---------TWFTQLKEGGRVIVPI 175 (213)
T ss_dssp SBBSCCCH---------HHHHHEEEEEEEEEEB
T ss_pred ccHHHhHH---------HHHHhcCCCcEEEEEE
Confidence 99998853 3567899999998865
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=99.39 E-value=1.4e-13 Score=127.02 Aligned_cols=99 Identities=18% Similarity=0.276 Sum_probs=84.5
Q ss_pred cCCCCCCEEEEEcCccCcccc-----cCCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeecCCCCCCCCCccEEE
Q 016157 118 NSLPSGSLVLDAGCGNGKYLG-----LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAI 184 (394)
Q Consensus 118 ~~l~~g~~VLDvGCG~G~~l~-----~~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~lp~~~~~fD~Vi 184 (394)
..+.||.+|||+|||+|.++. ..+...|+++|+++.+++.|+++ ++++..+|+.+. +.++.||+|+
T Consensus 81 l~i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~-~~~~~fD~V~ 159 (250)
T d1yb2a1 81 CGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADF-ISDQMYDAVI 159 (250)
T ss_dssp CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTC-CCSCCEEEEE
T ss_pred cCCCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeecc-cccceeeeee
Confidence 457899999999999998642 26788999999999999999986 578999999876 4578999998
Q ss_pred ehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCccch
Q 016157 185 SIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQE 225 (394)
Q Consensus 185 ~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~~~~ 225 (394)
+ ++++ +..+|.++.++|||||++++++++.+|.
T Consensus 160 l-----d~p~---p~~~l~~~~~~LKpGG~lv~~~P~i~Qv 192 (250)
T d1yb2a1 160 A-----DIPD---PWNHVQKIASMMKPGSVATFYLPNFDQS 192 (250)
T ss_dssp E-----CCSC---GGGSHHHHHHTEEEEEEEEEEESSHHHH
T ss_pred e-----cCCc---hHHHHHHHHHhcCCCceEEEEeCCcChH
Confidence 6 4666 6789999999999999999999887664
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=99.38 E-value=1.9e-13 Score=122.48 Aligned_cols=98 Identities=17% Similarity=0.291 Sum_probs=81.4
Q ss_pred CCCEEEEEcCccCcccc----cCCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeecCCCC--CCCCCccEEEehhh
Q 016157 122 SGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLP--YRSDFGDAAISIAV 188 (394)
Q Consensus 122 ~g~~VLDvGCG~G~~l~----~~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~lp--~~~~~fD~Vi~~~v 188 (394)
++..|||||||+|.++. ..|+..++|+|++..++..|.++ |+.++.+|+..+. ++++++|.|++.+.
T Consensus 29 ~~PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~l~Nv~~~~~Da~~l~~~~~~~~~d~v~i~fp 108 (204)
T d2fcaa1 29 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFS 108 (204)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESC
T ss_pred CCceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHhccCchhcccchhhhhcccCchhhhccccccc
Confidence 34589999999999753 48999999999999999988765 6899999998875 77899999999888
Q ss_pred hhhcCChhH-----HHHHHHHHHhccccCcEEEEEE
Q 016157 189 LHHLSTESR-----RKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 189 l~hl~~~~~-----~~~~L~ei~r~LkpGG~lli~~ 219 (394)
..|...... -..+|+++.|+|||||.|.|.+
T Consensus 109 ~P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~T 144 (204)
T d2fcaa1 109 DPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKT 144 (204)
T ss_dssp CCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEE
T ss_pred cccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEEE
Confidence 776543211 1479999999999999999976
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.38 E-value=3.5e-13 Score=122.43 Aligned_cols=93 Identities=22% Similarity=0.212 Sum_probs=79.4
Q ss_pred CCCCCCEEEEEcCccCcccc-----cCCCcEEEEEeCCHHHHHHHHHc------------CCeEEEeecCCCCCCCCCcc
Q 016157 119 SLPSGSLVLDAGCGNGKYLG-----LNPDCFFVGCDISPSLIKICVDR------------GHEVLVADAVNLPYRSDFGD 181 (394)
Q Consensus 119 ~l~~g~~VLDvGCG~G~~l~-----~~~~~~v~gvD~S~~~l~~a~~~------------~i~~~~~D~~~lp~~~~~fD 181 (394)
.++||.+|||||||+|+.+. ..+...|+|+|+++++++.|+++ ++.+..+|+...+...+.||
T Consensus 73 ~l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~~~~~~~~~fD 152 (224)
T d1i1na_ 73 QLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYD 152 (224)
T ss_dssp TSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCEE
T ss_pred ccCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeecccccchhhhhh
Confidence 57899999999999998642 25678999999999999999765 46789999998888888999
Q ss_pred EEEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 016157 182 AAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (394)
Q Consensus 182 ~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~ 220 (394)
+|++.+++++++. ++.+.|||||++++.+.
T Consensus 153 ~I~~~~~~~~ip~---------~l~~~LkpGG~LV~pv~ 182 (224)
T d1i1na_ 153 AIHVGAAAPVVPQ---------ALIDQLKPGGRLILPVG 182 (224)
T ss_dssp EEEECSBBSSCCH---------HHHHTEEEEEEEEEEES
T ss_pred hhhhhcchhhcCH---------HHHhhcCCCcEEEEEEc
Confidence 9999999988753 36789999999999764
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.34 E-value=1e-12 Score=126.01 Aligned_cols=106 Identities=13% Similarity=0.156 Sum_probs=81.6
Q ss_pred hHHHHHHHc--CCCCCCEEEEEcCccCcccc----cCCCcEEEEEeCCHHHHHHHHHc----------------CCeEEE
Q 016157 110 WPKVATFLN--SLPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR----------------GHEVLV 167 (394)
Q Consensus 110 ~~~l~~~l~--~l~~g~~VLDvGCG~G~~l~----~~~~~~v~gvD~S~~~l~~a~~~----------------~i~~~~ 167 (394)
+..+..++. .++++.+|||||||+|..+. ..+...++|+|+|+.+++.|++. ++++++
T Consensus 137 ~~~~~~~~~~~~l~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~ 216 (328)
T d1nw3a_ 137 FDLVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLER 216 (328)
T ss_dssp HHHHHHHHHHSCCCTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEE
T ss_pred HHHHHHHHHHcCCCCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEE
Confidence 334444444 47889999999999998642 24556899999999999998753 478999
Q ss_pred eecCCCCCCCCCc--cEEEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 016157 168 ADAVNLPYRSDFG--DAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 168 ~D~~~lp~~~~~f--D~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~ 219 (394)
+|+.++++.+..| |+|+++ .+.|.++ +..+|.++.++|||||++++..
T Consensus 217 gd~~~~~~~~~~~~advi~~~-~~~f~~~---~~~~l~e~~r~LKpGg~iv~~~ 266 (328)
T d1nw3a_ 217 GDFLSEEWRERIANTSVIFVN-NFAFGPE---VDHQLKERFANMKEGGRIVSSK 266 (328)
T ss_dssp CCTTSHHHHHHHHHCSEEEEC-CTTTCHH---HHHHHHHHHTTCCTTCEEEESS
T ss_pred CcccccccccccCcceEEEEc-ceecchH---HHHHHHHHHHhCCCCcEEEEec
Confidence 9999998776655 556654 4555544 7899999999999999998753
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.29 E-value=3.1e-12 Score=114.44 Aligned_cols=97 Identities=18% Similarity=0.328 Sum_probs=78.1
Q ss_pred CCEEEEEcCccCcccc----cCCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeecCCCC--CCCCCccEEEehhhh
Q 016157 123 GSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLP--YRSDFGDAAISIAVL 189 (394)
Q Consensus 123 g~~VLDvGCG~G~~l~----~~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~lp--~~~~~fD~Vi~~~vl 189 (394)
...|||||||+|.++. ..|...++|+|+++.++..|.++ ++.++.+|+..+. +++.++|.|++.+..
T Consensus 32 ~plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~l~Ni~~~~~da~~l~~~~~~~~~~~i~i~fPd 111 (204)
T d1yzha1 32 NPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFSD 111 (204)
T ss_dssp CCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEESCC
T ss_pred CCeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhccccceeeecCHHHHhhhccCCceehhcccccc
Confidence 3589999999999753 47899999999999999988765 6899999998875 678899999876654
Q ss_pred hhcCChhH-----HHHHHHHHHhccccCcEEEEEE
Q 016157 190 HHLSTESR-----RKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 190 ~hl~~~~~-----~~~~L~ei~r~LkpGG~lli~~ 219 (394)
.+.....+ ...+|+.+.++|||||.|.+.+
T Consensus 112 Pw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~T 146 (204)
T d1yzha1 112 PWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKT 146 (204)
T ss_dssp CCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEE
T ss_pred cccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEEE
Confidence 33322110 1589999999999999999876
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=99.29 E-value=1.8e-12 Score=120.70 Aligned_cols=101 Identities=14% Similarity=0.181 Sum_probs=81.5
Q ss_pred HHcCCCCCCEEEEEcCccCcccc-----cCCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeecCCCCCCCCCccE
Q 016157 116 FLNSLPSGSLVLDAGCGNGKYLG-----LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDA 182 (394)
Q Consensus 116 ~l~~l~~g~~VLDvGCG~G~~l~-----~~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~lp~~~~~fD~ 182 (394)
....+.||.+|||+|||+|.++. ..++..|+++|+++.+++.|+++ ++.+...|+.. .+....||.
T Consensus 97 ~~l~i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d~~~-~~~~~~~D~ 175 (266)
T d1o54a_ 97 MMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISE-GFDEKDVDA 175 (266)
T ss_dssp HHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGG-CCSCCSEEE
T ss_pred HhhCCCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEeccccc-cccccceee
Confidence 33468999999999999998642 25788999999999999999886 34566666543 355677888
Q ss_pred EEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCccch
Q 016157 183 AISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQE 225 (394)
Q Consensus 183 Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~~~~ 225 (394)
|+ +++++ +..+|+++.++|||||+++++.+..+|.
T Consensus 176 V~-----~d~p~---p~~~l~~~~~~LKpGG~lv~~~P~~~Qv 210 (266)
T d1o54a_ 176 LF-----LDVPD---PWNYIDKCWEALKGGGRFATVCPTTNQV 210 (266)
T ss_dssp EE-----ECCSC---GGGTHHHHHHHEEEEEEEEEEESSHHHH
T ss_pred eE-----ecCCC---HHHHHHHHHhhcCCCCEEEEEeCcccHH
Confidence 76 47787 7789999999999999999999887764
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.28 E-value=1.4e-12 Score=124.72 Aligned_cols=95 Identities=21% Similarity=0.226 Sum_probs=77.9
Q ss_pred CCCCEEEEEcCccCcccc--cCCC-cEEEEEeCCHHHHHHHHHc--------CCeEEEeecCCCCCCCCCccEEEehhhh
Q 016157 121 PSGSLVLDAGCGNGKYLG--LNPD-CFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISIAVL 189 (394)
Q Consensus 121 ~~g~~VLDvGCG~G~~l~--~~~~-~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~lp~~~~~fD~Vi~~~vl 189 (394)
.+|.+|||||||+|.++. +..+ ..|+|+|.|+ ++..|++. .+.++++|+.++++++++||+|++..+.
T Consensus 37 ~~~~~VLDlGcGtG~ls~~aa~~Ga~~V~avd~s~-~~~~a~~~~~~~~~~~~i~~i~~~~~~l~~~~~~~D~i~se~~~ 115 (328)
T d1g6q1_ 37 FKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSS-IIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMG 115 (328)
T ss_dssp HTTCEEEEETCTTSHHHHHHHHTCCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCCB
T ss_pred CCcCEEEEeCCCCCHHHHHHHHhCCCEEEEEeCCH-HHHHHHHHHHHhCccccceEEEeehhhccCcccceeEEEEEecc
Confidence 468899999999998742 2233 4899999996 55666553 4789999999999999999999998888
Q ss_pred hhcCChhHHHHHHHHHHhccccCcEEE
Q 016157 190 HHLSTESRRKKAIEELVRVVKKGSLVL 216 (394)
Q Consensus 190 ~hl~~~~~~~~~L~ei~r~LkpGG~ll 216 (394)
+++........++..+.|+|||||+++
T Consensus 116 ~~~~~e~~~~~~~~a~~r~LkpgG~ii 142 (328)
T d1g6q1_ 116 YFLLYESMMDTVLYARDHYLVEGGLIF 142 (328)
T ss_dssp TTBSTTCCHHHHHHHHHHHEEEEEEEE
T ss_pred eeeccchhHHHHHHHHHhccCCCeEEE
Confidence 777765557889999999999999986
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.28 E-value=3.3e-12 Score=121.93 Aligned_cols=103 Identities=15% Similarity=0.169 Sum_probs=82.8
Q ss_pred HHcCCCCCCEEEEEcCccCcccc-----cCCCcEEEEEeCCHHHHHHHHHc------------------CCeEEEeecCC
Q 016157 116 FLNSLPSGSLVLDAGCGNGKYLG-----LNPDCFFVGCDISPSLIKICVDR------------------GHEVLVADAVN 172 (394)
Q Consensus 116 ~l~~l~~g~~VLDvGCG~G~~l~-----~~~~~~v~gvD~S~~~l~~a~~~------------------~i~~~~~D~~~ 172 (394)
....+.||.+|||+|||+|.++. ..+...|+++|+++.+++.|+++ ++++..+|+..
T Consensus 92 ~~l~i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~~di~~ 171 (324)
T d2b25a1 92 SMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISG 171 (324)
T ss_dssp HHHTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTC
T ss_pred HHhCCCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEEecchhh
Confidence 33468999999999999999743 26788999999999999999874 47889999887
Q ss_pred CC--CCCCCccEEEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCccchh
Q 016157 173 LP--YRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQED 226 (394)
Q Consensus 173 lp--~~~~~fD~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~~~~~ 226 (394)
.. +.+..||.|+. .+++ +..+|.++.++|||||+|++++++.+|..
T Consensus 172 ~~~~~~~~~fD~V~L-----D~p~---P~~~l~~~~~~LKpGG~lv~~~P~i~Qv~ 219 (324)
T d2b25a1 172 ATEDIKSLTFDAVAL-----DMLN---PHVTLPVFYPHLKHGGVCAVYVVNITQVI 219 (324)
T ss_dssp CC-------EEEEEE-----CSSS---TTTTHHHHGGGEEEEEEEEEEESSHHHHH
T ss_pred cccccCCCCcceEee-----cCcC---HHHHHHHHHHhccCCCEEEEEeCCHHHHH
Confidence 54 35678999986 4566 66899999999999999999999988754
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.25 E-value=4.3e-12 Score=120.33 Aligned_cols=99 Identities=20% Similarity=0.132 Sum_probs=79.7
Q ss_pred CCCCCCEEEEEcCccCcccc--cCCC-cEEEEEeCCHHHHHHHHHc-------CCeEEEeecCCCCCCCCCccEEEehhh
Q 016157 119 SLPSGSLVLDAGCGNGKYLG--LNPD-CFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFGDAAISIAV 188 (394)
Q Consensus 119 ~l~~g~~VLDvGCG~G~~l~--~~~~-~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~lp~~~~~fD~Vi~~~v 188 (394)
.+.+|.+|||||||+|.+.. +..| ..|+|+|.|+.+...++.. .+.++.+|+.+++++.++||+|++...
T Consensus 32 ~~~~~~~VLDiGcG~G~lsl~aa~~Ga~~V~aid~s~~~~~a~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~D~Ivse~~ 111 (311)
T d2fyta1 32 HIFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEWM 111 (311)
T ss_dssp GGTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSCEEEEEECCC
T ss_pred ccCCcCEEEEECCCCCHHHHHHHHcCCCEEEEEeCHHHHHHHHHHHHHhCCCccceEEEeeHHHhcCccccceEEEEeee
Confidence 34578899999999998632 2234 4899999999886543322 478999999999998899999999888
Q ss_pred hhhcCChhHHHHHHHHHHhccccCcEEEE
Q 016157 189 LHHLSTESRRKKAIEELVRVVKKGSLVLI 217 (394)
Q Consensus 189 l~hl~~~~~~~~~L~ei~r~LkpGG~lli 217 (394)
.+++.....+..++....++|||||+++-
T Consensus 112 ~~~~~~e~~~~~~~~a~~~~Lkp~G~iip 140 (311)
T d2fyta1 112 GYFLLFESMLDSVLYAKNKYLAKGGSVYP 140 (311)
T ss_dssp BTTBTTTCHHHHHHHHHHHHEEEEEEEES
T ss_pred eeecccccccHHHHHHHHhcCCCCcEEec
Confidence 88877665577888888999999999873
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.24 E-value=6e-12 Score=114.33 Aligned_cols=98 Identities=18% Similarity=0.175 Sum_probs=77.7
Q ss_pred CCCCCCEEEEEcCccCccccc-----CCCcEEEEEeCCHHHHHHHHHc-----CCeEEEeecCCC---CCCCCCccEEEe
Q 016157 119 SLPSGSLVLDAGCGNGKYLGL-----NPDCFFVGCDISPSLIKICVDR-----GHEVLVADAVNL---PYRSDFGDAAIS 185 (394)
Q Consensus 119 ~l~~g~~VLDvGCG~G~~l~~-----~~~~~v~gvD~S~~~l~~a~~~-----~i~~~~~D~~~l---p~~~~~fD~Vi~ 185 (394)
.+.||.+|||+|||+|.++.. .+...|+|+|+|+.|++.++++ ++..+..|.... +.....+|+|++
T Consensus 70 ~i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~~~~~~i~~d~~~~~~~~~~~~~vD~i~~ 149 (227)
T d1g8aa_ 70 PIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIFE 149 (227)
T ss_dssp CCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEEEE
T ss_pred ccCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhcCCceEEEEECCCcccccccccceEEEEE
Confidence 367999999999999997542 5788999999999999998876 567788887653 234467888775
Q ss_pred hhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 016157 186 IAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 221 (394)
Q Consensus 186 ~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~ 221 (394)
. +.|... ...+++++.+.|||||++++..++
T Consensus 150 d--~~~~~~---~~~~l~~~~~~LkpgG~lvi~~ka 180 (227)
T d1g8aa_ 150 D--VAQPTQ---AKILIDNAEVYLKRGGYGMIAVKS 180 (227)
T ss_dssp C--CCSTTH---HHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred E--ccccch---HHHHHHHHHHhcccCCeEEEEEEC
Confidence 3 334333 788999999999999999998764
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.23 E-value=2.4e-12 Score=122.58 Aligned_cols=95 Identities=17% Similarity=0.096 Sum_probs=77.0
Q ss_pred CCCCEEEEEcCccCcccc--cCCC-cEEEEEeCCHHHHHHHHHc--------CCeEEEeecCCCCCCCCCccEEEehhhh
Q 016157 121 PSGSLVLDAGCGNGKYLG--LNPD-CFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISIAVL 189 (394)
Q Consensus 121 ~~g~~VLDvGCG~G~~l~--~~~~-~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~lp~~~~~fD~Vi~~~vl 189 (394)
.+|.+|||||||+|.+.. +..| ..|+|+|.|+.+. .+++. ++.++.+|+.+++++.++||+|++..+.
T Consensus 32 ~~~~~VLDiGcG~G~ls~~aa~~Ga~~V~avd~s~~~~-~a~~~~~~n~~~~~v~~~~~~~~~~~~~~~~~D~ivs~~~~ 110 (316)
T d1oria_ 32 FKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSISD-YAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMG 110 (316)
T ss_dssp HTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTTHH-HHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCCB
T ss_pred CCcCEEEEEecCCcHHHHHHHHhCCCEEEEEcCcHHHh-hhhhHHHHhCCccccceEeccHHHcccccceeEEEeeeeee
Confidence 468899999999998632 2234 4899999997653 33332 4789999999999988999999998888
Q ss_pred hhcCChhHHHHHHHHHHhccccCcEEE
Q 016157 190 HHLSTESRRKKAIEELVRVVKKGSLVL 216 (394)
Q Consensus 190 ~hl~~~~~~~~~L~ei~r~LkpGG~ll 216 (394)
+++..+.....++..+.++|||||+++
T Consensus 111 ~~l~~e~~~~~~l~~~~r~Lkp~G~ii 137 (316)
T d1oria_ 111 YCLFYESMLNTVLHARDKWLAPDGLIF 137 (316)
T ss_dssp BTBTBTCCHHHHHHHHHHHEEEEEEEE
T ss_pred eeeccHHHHHHHHHHHHhcCCCCeEEE
Confidence 777765557899999999999999987
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=99.20 E-value=6.1e-12 Score=114.04 Aligned_cols=92 Identities=18% Similarity=0.231 Sum_probs=76.3
Q ss_pred CCCCCCEEEEEcCccCccccc--CCCcEEEEEeCCHHHHHHHHHc-----CCeEEEeecCCCCCCCCCccEEEehhhhhh
Q 016157 119 SLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR-----GHEVLVADAVNLPYRSDFGDAAISIAVLHH 191 (394)
Q Consensus 119 ~l~~g~~VLDvGCG~G~~l~~--~~~~~v~gvD~S~~~l~~a~~~-----~i~~~~~D~~~lp~~~~~fD~Vi~~~vl~h 191 (394)
.+.+|.+|||||||+|+++.. .....|+++|+++.+++.|+++ ++.++.+|........++||+|++.+++++
T Consensus 67 ~l~~g~~VLdIG~GsGy~ta~La~l~~~V~aiE~~~~~~~~A~~~~~~~~nv~~~~~d~~~g~~~~~pfD~Iiv~~a~~~ 146 (224)
T d1vbfa_ 67 DLHKGQKVLEIGTGIGYYTALIAEIVDKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYEEEKPYDRVVVWATAPT 146 (224)
T ss_dssp TCCTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCGGGCCEEEEEESSBBSS
T ss_pred hhcccceEEEecCCCCHHHHHHHHHhcccccccccHHHHHHHHHHHhcccccccccCchhhcchhhhhHHHHHhhcchhh
Confidence 578999999999999997542 2346899999999999999886 688999998775555688999999999888
Q ss_pred cCChhHHHHHHHHHHhccccCcEEEEEE
Q 016157 192 LSTESRRKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 192 l~~~~~~~~~L~ei~r~LkpGG~lli~~ 219 (394)
++. .+.+.|||||++++-+
T Consensus 147 ip~---------~l~~qLk~GGrLV~pv 165 (224)
T d1vbfa_ 147 LLC---------KPYEQLKEGGIMILPI 165 (224)
T ss_dssp CCH---------HHHHTEEEEEEEEEEE
T ss_pred hhH---------HHHHhcCCCCEEEEEE
Confidence 753 2457899999999865
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.15 E-value=2.7e-11 Score=109.69 Aligned_cols=93 Identities=20% Similarity=0.225 Sum_probs=78.1
Q ss_pred CCCCCCEEEEEcCccCccccc----------CCCcEEEEEeCCHHHHHHHHHc------------CCeEEEeecCCCCCC
Q 016157 119 SLPSGSLVLDAGCGNGKYLGL----------NPDCFFVGCDISPSLIKICVDR------------GHEVLVADAVNLPYR 176 (394)
Q Consensus 119 ~l~~g~~VLDvGCG~G~~l~~----------~~~~~v~gvD~S~~~l~~a~~~------------~i~~~~~D~~~lp~~ 176 (394)
.+.++.+|||||||+|+++.. .++.+|+++|+++++++.|+++ ++.++.+|.......
T Consensus 77 ~l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~~~d~~~~~~~ 156 (223)
T d1r18a_ 77 HLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYPP 156 (223)
T ss_dssp TCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCGG
T ss_pred ccCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEEeccccccccc
Confidence 578999999999999997431 3456899999999999998764 688999999887666
Q ss_pred CCCccEEEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 016157 177 SDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (394)
Q Consensus 177 ~~~fD~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~ 220 (394)
.+.||.|++.+++.+++. .+.+.|||||++++.+.
T Consensus 157 ~~~fD~Iiv~~a~~~~p~---------~l~~~Lk~gG~lV~pvg 191 (223)
T d1r18a_ 157 NAPYNAIHVGAAAPDTPT---------ELINQLASGGRLIVPVG 191 (223)
T ss_dssp GCSEEEEEECSCBSSCCH---------HHHHTEEEEEEEEEEES
T ss_pred ccceeeEEEEeechhchH---------HHHHhcCCCcEEEEEEe
Confidence 789999999999888763 35689999999988764
|
| >d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Chemotaxis receptor methyltransferase CheR, C-terminal domain domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=99.07 E-value=2.1e-10 Score=101.30 Aligned_cols=108 Identities=13% Similarity=0.114 Sum_probs=77.7
Q ss_pred hHHHHHHHcCCCCCCEEEEEcCccCccc--------c----cCCCcEEEEEeCCHHHHHHHHHc----------------
Q 016157 110 WPKVATFLNSLPSGSLVLDAGCGNGKYL--------G----LNPDCFFVGCDISPSLIKICVDR---------------- 161 (394)
Q Consensus 110 ~~~l~~~l~~l~~g~~VLDvGCG~G~~l--------~----~~~~~~v~gvD~S~~~l~~a~~~---------------- 161 (394)
|..+...+..-.+..+|+++|||+|.-. . .....+++|+|+|+.+++.|++.
T Consensus 12 f~~L~~~~~~~~~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~ 91 (193)
T d1af7a2 12 FPILAEHARRRHGEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQ 91 (193)
T ss_dssp HHHHHHHHHHSCSCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHH
T ss_pred HHHHHHHHhccCCCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHh
Confidence 4444444433334469999999999821 1 13346899999999999999853
Q ss_pred ----------------------CCeEEEeecCCCC-CCCCCccEEEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEE
Q 016157 162 ----------------------GHEVLVADAVNLP-YRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLIT 218 (394)
Q Consensus 162 ----------------------~i~~~~~D~~~lp-~~~~~fD~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~ 218 (394)
.+.+...+..... ...+.||+|+|.+||.++..+. ..++++.+++.|+|||.|++-
T Consensus 92 ~yf~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~fDvI~CRNVLiYf~~~~-~~~vl~~l~~~L~pGG~L~lG 170 (193)
T d1af7a2 92 RYFMRGTGPHEGLVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTT-QEDILRRFVPLLKPDGLLFAG 170 (193)
T ss_dssp HHEEECCTTSCSEEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHH-HHHHHHHHGGGEEEEEEEEEC
T ss_pred hceeecCCCccceeehHHHHHHHHHHhhhhccccccCCCCCccEEEeehhHHhcCHHH-HHHHHHHHHHHhCCCcEEEEe
Confidence 1223344444322 3357899999999999998755 689999999999999988765
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.04 E-value=1.5e-10 Score=113.14 Aligned_cols=127 Identities=16% Similarity=0.205 Sum_probs=83.2
Q ss_pred HHHHHHHHHhhcc-cccccc-c----------cchHHHHHHHc--CCCCCCEEEEEcCccCcccc----cCCCcEEEEEe
Q 016157 88 KKYVHRVYDAIAP-HFSSTR-F----------AKWPKVATFLN--SLPSGSLVLDAGCGNGKYLG----LNPDCFFVGCD 149 (394)
Q Consensus 88 ~~~v~~~Yd~~a~-~y~~~~-~----------~~~~~l~~~l~--~l~~g~~VLDvGCG~G~~l~----~~~~~~v~gvD 149 (394)
..-.+++|.+... .....+ | ..++.+..++. .+.+|.++||||||+|..+. ..+...++|||
T Consensus 168 ~~i~~~~y~r~v~p~~~~L~~Y~~fs~~vYGEl~~~~i~~Il~~l~Lkpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GID 247 (406)
T d1u2za_ 168 HDFLHIVYTRSIHPQANKLKHYKAFSNYVYGELLPNFLSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCE 247 (406)
T ss_dssp HHHHHHHHHHHTGGGGGGGCSCCSSGGGCCCCBCHHHHHHHHHHTTCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEE
T ss_pred HHHHHHhhcccccCChHHhcccCCCCCCccccCCHHHHHHHHHHhCCCCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEe
Confidence 3446777877653 222211 1 12344555554 47899999999999999743 23445899999
Q ss_pred CCHHHHHHHHHcC----------------CeE-EEeecCCCCCCC---CCccEEEehhhhhhcCChhHHHHHHHHHHhcc
Q 016157 150 ISPSLIKICVDRG----------------HEV-LVADAVNLPYRS---DFGDAAISIAVLHHLSTESRRKKAIEELVRVV 209 (394)
Q Consensus 150 ~S~~~l~~a~~~~----------------i~~-~~~D~~~lp~~~---~~fD~Vi~~~vl~hl~~~~~~~~~L~ei~r~L 209 (394)
+|+.|++.|+++. ..+ ..+++...+..+ ..+|+|+++. ++|.++ +..+|.++.+.|
T Consensus 248 iS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~~~~f~~~~~~d~~~~~adVV~inn-~~f~~~---l~~~L~ei~r~L 323 (406)
T d1u2za_ 248 IMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVDNNRVAELIPQCDVILVNN-FLFDED---LNKKVEKILQTA 323 (406)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCSTTCHHHHHHGGGCSEEEECC-TTCCHH---HHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHHhhhhhhhccccccceeeeeechhhccccccccccceEEEEec-ccCchH---HHHHHHHHHHhc
Confidence 9999999998751 112 234444333111 3467887654 344444 789999999999
Q ss_pred ccCcEEEEE
Q 016157 210 KKGSLVLIT 218 (394)
Q Consensus 210 kpGG~lli~ 218 (394)
||||++++.
T Consensus 324 KPGGrIVs~ 332 (406)
T d1u2za_ 324 KVGCKIISL 332 (406)
T ss_dssp CTTCEEEES
T ss_pred CCCcEEEEe
Confidence 999998875
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=99.01 E-value=9.2e-11 Score=105.46 Aligned_cols=93 Identities=20% Similarity=0.209 Sum_probs=77.8
Q ss_pred CCCCCCEEEEEcCccCccccc---CCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeecCCCCCCCCCccEEEehhh
Q 016157 119 SLPSGSLVLDAGCGNGKYLGL---NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFGDAAISIAV 188 (394)
Q Consensus 119 ~l~~g~~VLDvGCG~G~~l~~---~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~lp~~~~~fD~Vi~~~v 188 (394)
.+.+|.+|||||||+|+.+.. ..+..|+++|+.+.+++.|+++ ++.++.+|........+.||.|++.+.
T Consensus 75 ~l~~g~~VLeIGsGsGY~taila~l~g~~V~~ie~~~~l~~~a~~~l~~~g~~nv~~~~gd~~~g~~~~~pfD~Iiv~~a 154 (215)
T d1jg1a_ 75 NLKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFPPKAPYDVIIVTAG 154 (215)
T ss_dssp TCCTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEEEEEECSB
T ss_pred ccCccceEEEecCCCChhHHHHHHhhCceeEEEeccHHHHHHHHHHHHHcCCceeEEEECccccCCcccCcceeEEeecc
Confidence 578999999999999997542 3346799999999999999986 689999999886666889999999999
Q ss_pred hhhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 016157 189 LHHLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (394)
Q Consensus 189 l~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~ 220 (394)
+.+++. . +...|||||++++-+-
T Consensus 155 ~~~ip~-----~----l~~qL~~gGrLv~pv~ 177 (215)
T d1jg1a_ 155 APKIPE-----P----LIEQLKIGGKLIIPVG 177 (215)
T ss_dssp BSSCCH-----H----HHHTEEEEEEEEEEEC
T ss_pred cccCCH-----H----HHHhcCCCCEEEEEEc
Confidence 988864 2 4567999999998753
|
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.94 E-value=4e-10 Score=103.15 Aligned_cols=98 Identities=24% Similarity=0.289 Sum_probs=78.7
Q ss_pred CCCCCEEEEEcCccCccc----ccCCCcEEEEEeCCHHHHHHHHHc-CCeEEEeecCCCCCCCCCccEEEehhhhhhcCC
Q 016157 120 LPSGSLVLDAGCGNGKYL----GLNPDCFFVGCDISPSLIKICVDR-GHEVLVADAVNLPYRSDFGDAAISIAVLHHLST 194 (394)
Q Consensus 120 l~~g~~VLDvGCG~G~~l----~~~~~~~v~gvD~S~~~l~~a~~~-~i~~~~~D~~~lp~~~~~fD~Vi~~~vl~hl~~ 194 (394)
.....+|||||||+|.++ +..|+.+++..|+ +..++.+... +++++.+|+.+ +.+ ..|++++..++|++++
T Consensus 79 f~~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~~~~~~ri~~~~gd~~~-~~p--~~D~~~l~~vLh~~~d 154 (244)
T d1fp1d2 79 FEGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENAPPLSGIEHVGGDMFA-SVP--QGDAMILKAVCHNWSD 154 (244)
T ss_dssp TTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCCTTEEEEECCTTT-CCC--CEEEEEEESSGGGSCH
T ss_pred ccCCcEEEEecCCCcHHHHHHHHHCCCCeEEEecc-hhhhhccCCCCCeEEecCCccc-ccc--cceEEEEehhhhhCCH
Confidence 455689999999999975 3589999999998 4444433322 68999999875 333 3599999999999987
Q ss_pred hhHHHHHHHHHHhccccCcEEEEEEcCc
Q 016157 195 ESRRKKAIEELVRVVKKGSLVLITVWAV 222 (394)
Q Consensus 195 ~~~~~~~L~ei~r~LkpGG~lli~~~~~ 222 (394)
++ ..++|+++++.|+|||+++|.....
T Consensus 155 e~-~~~iL~~~~~aL~pgg~llI~e~v~ 181 (244)
T d1fp1d2 155 EK-CIEFLSNCHKALSPNGKVIIVEFIL 181 (244)
T ss_dssp HH-HHHHHHHHHHHEEEEEEEEEEEEEE
T ss_pred HH-HHHHHHHHHHHcCCCcEEEEEEEEe
Confidence 65 7899999999999999999997643
|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=98.88 E-value=1.7e-09 Score=100.39 Aligned_cols=98 Identities=17% Similarity=0.258 Sum_probs=75.9
Q ss_pred CCCCEEEEEcCccCccc----ccCCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeecCCCCCCCCCccEEEehhh-
Q 016157 121 PSGSLVLDAGCGNGKYL----GLNPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFGDAAISIAV- 188 (394)
Q Consensus 121 ~~g~~VLDvGCG~G~~l----~~~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~lp~~~~~fD~Vi~~~v- 188 (394)
..+.+|||+|||+|... ...|...|+|+|+|+.+++.|+++ +++++++|+.+ ++.+++||+|+++--
T Consensus 107 ~~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~~Na~~~~~~~v~~~~~d~~~-~~~~~~fDlIvsNPPY 185 (274)
T d2b3ta1 107 EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFS-ALAGQQFAMIVSNPPY 185 (274)
T ss_dssp SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTG-GGTTCCEEEEEECCCC
T ss_pred ccccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHHHHHHHhCcccceeeeccccc-ccCCCceeEEEecchh
Confidence 44578999999999863 347889999999999999999987 57899999876 455679999999622
Q ss_pred ------------hhhcCCh---------hHHHHHHHHHHhccccCcEEEEEE
Q 016157 189 ------------LHHLSTE---------SRRKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 189 ------------l~hl~~~---------~~~~~~L~ei~r~LkpGG~lli~~ 219 (394)
+.|=+.. .-..+++.++.++|+|||.+++..
T Consensus 186 i~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~lEi 237 (274)
T d2b3ta1 186 IDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEH 237 (274)
T ss_dssp BCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred hhhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEEEE
Confidence 1111110 114678899999999999999854
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.85 E-value=1.4e-09 Score=95.84 Aligned_cols=111 Identities=15% Similarity=0.276 Sum_probs=84.7
Q ss_pred HHHHHHHcCCCCCCEEEEEcCccCccc----ccCCCcEEEEEeCCHHHHHHHHHc------CCeEEEeecCCCC-----C
Q 016157 111 PKVATFLNSLPSGSLVLDAGCGNGKYL----GLNPDCFFVGCDISPSLIKICVDR------GHEVLVADAVNLP-----Y 175 (394)
Q Consensus 111 ~~l~~~l~~l~~g~~VLDvGCG~G~~l----~~~~~~~v~gvD~S~~~l~~a~~~------~i~~~~~D~~~lp-----~ 175 (394)
.++..++. +.++..+||++||+|.++ ...++..++|+|+++.|++.|+++ ++.++++++.++. +
T Consensus 13 ~evi~~l~-~~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~~~r~~~~~~~f~~~~~~~~~~ 91 (192)
T d1m6ya2 13 REVIEFLK-PEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFLLKTL 91 (192)
T ss_dssp HHHHHHHC-CCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHHHHHT
T ss_pred HHHHHhhC-CCCCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhccccccccchhHHHhhHHHHHHHc
Confidence 34555554 577889999999999864 346788999999999999999986 5788999887753 4
Q ss_pred CCCCccEEEehhhh--hhcCCh----hHHHHHHHHHHhccccCcEEEEEEcCc
Q 016157 176 RSDFGDAAISIAVL--HHLSTE----SRRKKAIEELVRVVKKGSLVLITVWAV 222 (394)
Q Consensus 176 ~~~~fD~Vi~~~vl--~hl~~~----~~~~~~L~ei~r~LkpGG~lli~~~~~ 222 (394)
..++||.|+.-..+ +++... ......|..+.++|+|||++++..|..
T Consensus 92 ~~~~vdgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~f~s 144 (192)
T d1m6ya2 92 GIEKVDGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVVISFHS 144 (192)
T ss_dssp TCSCEEEEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEEESSH
T ss_pred CCCCcceeeeccchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeeeecccc
Confidence 45789999765333 122221 126788999999999999999988764
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=98.78 E-value=1.2e-09 Score=103.61 Aligned_cols=102 Identities=16% Similarity=0.071 Sum_probs=75.9
Q ss_pred CCCCEEEEEcCccCccccc--CCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeecCCC----CCCCCCccEEEehh
Q 016157 121 PSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNL----PYRSDFGDAAISIA 187 (394)
Q Consensus 121 ~~g~~VLDvGCG~G~~l~~--~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~l----p~~~~~fD~Vi~~~ 187 (394)
..|.+|||++||+|.++.. ..+..|+++|+|+.+++.|+++ +++++++|+.++ +...++||+|++..
T Consensus 144 ~~g~rVLDl~~gtG~~s~~~a~g~~~V~~vD~s~~al~~a~~n~~~ngl~~~~~i~~d~~~~~~~~~~~~~~fD~Vi~Dp 223 (318)
T d1wxxa2 144 FRGERALDVFSYAGGFALHLALGFREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLDP 223 (318)
T ss_dssp CCEEEEEEETCTTTHHHHHHHHHEEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEECC
T ss_pred hCCCeeeccCCCCcHHHHHHHhcCCcEEeecchHHHHHHHHHHHHHcCCCCcceeeccHHHHhhhhHhhhcCCCEEEEcC
Confidence 3688999999999997532 3445899999999999999976 468899998763 34467899999843
Q ss_pred hhhhcCC------hhHHHHHHHHHHhccccCcEEEEEEcCc
Q 016157 188 VLHHLST------ESRRKKAIEELVRVVKKGSLVLITVWAV 222 (394)
Q Consensus 188 vl~hl~~------~~~~~~~L~ei~r~LkpGG~lli~~~~~ 222 (394)
--..... ......++..+.++|||||.|++++.+.
T Consensus 224 P~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~scs~ 264 (318)
T d1wxxa2 224 PAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSH 264 (318)
T ss_dssp CCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred CccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCc
Confidence 2111000 0113568889999999999999988654
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=98.78 E-value=2.6e-09 Score=98.57 Aligned_cols=98 Identities=15% Similarity=0.181 Sum_probs=76.7
Q ss_pred HHcCCCCCCEEEEEcCccCcccc---cCCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeecCCCCCCCCCccEEE
Q 016157 116 FLNSLPSGSLVLDAGCGNGKYLG---LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAI 184 (394)
Q Consensus 116 ~l~~l~~g~~VLDvGCG~G~~l~---~~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~lp~~~~~fD~Vi 184 (394)
+...+.+|.+|||+|||+|.+.- .....+|+++|+++.+++.++++ .++++++|+..++. .+.||.|+
T Consensus 101 i~~~~~~g~~VlD~~aG~G~~~l~~a~~~~~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~~~~~~-~~~~D~Ii 179 (260)
T d2frna1 101 MAKVAKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG-ENIADRIL 179 (260)
T ss_dssp HHHHCCTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC-CSCEEEEE
T ss_pred HHhhcCCccEEEECcceEcHHHHHHHHhCCcEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcchHHhcc-CCCCCEEE
Confidence 33446789999999999999742 23446999999999999999876 37899999998764 57899998
Q ss_pred ehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 016157 185 SIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 221 (394)
Q Consensus 185 ~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~ 221 (394)
+... +. ...+|.++.++|+|||.+.+..+.
T Consensus 180 ~~~p----~~---~~~~l~~a~~~l~~gG~lh~~~~~ 209 (260)
T d2frna1 180 MGYV----VR---THEFIPKALSIAKDGAIIHYHNTV 209 (260)
T ss_dssp ECCC----SS---GGGGHHHHHHHEEEEEEEEEEEEE
T ss_pred ECCC----Cc---hHHHHHHHHhhcCCCCEEEEEecc
Confidence 7521 22 356788899999999999877654
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.76 E-value=3.2e-09 Score=100.97 Aligned_cols=104 Identities=16% Similarity=0.116 Sum_probs=76.3
Q ss_pred CCCCCCEEEEEcCccCccccc---CCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeecCC----CCCCCCCccEE
Q 016157 119 SLPSGSLVLDAGCGNGKYLGL---NPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVN----LPYRSDFGDAA 183 (394)
Q Consensus 119 ~l~~g~~VLDvGCG~G~~l~~---~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~----lp~~~~~fD~V 183 (394)
.+.+|.+|||+|||+|.++.. .....|+++|+|+.+++.|+++ .++++++|+.+ ++....+||+|
T Consensus 142 ~~~~g~~VLDl~~g~G~~si~~a~~ga~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~~~~~~~~~~~~fD~V 221 (324)
T d2as0a2 142 WVQPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIV 221 (324)
T ss_dssp GCCTTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred hcCCCCeeecccCcccchhhhhhhcCCcEEEeecCCHHHHHHHHHHHHHcCCCccceeeechhhhhhHHHHhccCCCCch
Confidence 357899999999999997531 2234899999999999999886 35789999865 23456789999
Q ss_pred EehhhhhhcCCh------hHHHHHHHHHHhccccCcEEEEEEcCc
Q 016157 184 ISIAVLHHLSTE------SRRKKAIEELVRVVKKGSLVLITVWAV 222 (394)
Q Consensus 184 i~~~vl~hl~~~------~~~~~~L~ei~r~LkpGG~lli~~~~~ 222 (394)
++..--...... ....+++..+.++|||||+|++++.+.
T Consensus 222 i~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~s~ 266 (324)
T d2as0a2 222 VLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQ 266 (324)
T ss_dssp EECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCT
T ss_pred hcCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeCCc
Confidence 984321110000 013567888999999999999988654
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.67 E-value=9.5e-09 Score=93.77 Aligned_cols=96 Identities=16% Similarity=0.171 Sum_probs=77.2
Q ss_pred CCCEEEEEcCccCccc----ccCCCcEEEEEeCCHHHHHHHHHc-CCeEEEeecCCCCCCCCCccEEEehhhhhhcCChh
Q 016157 122 SGSLVLDAGCGNGKYL----GLNPDCFFVGCDISPSLIKICVDR-GHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTES 196 (394)
Q Consensus 122 ~g~~VLDvGCG~G~~l----~~~~~~~v~gvD~S~~~l~~a~~~-~i~~~~~D~~~lp~~~~~fD~Vi~~~vl~hl~~~~ 196 (394)
...+|||||||+|.++ ...|+.+++..|+ +..++.+... +++++.+|+.+- .+ .+|++++..+||++++++
T Consensus 80 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~~~~~~rv~~~~gD~f~~-~p--~aD~~~l~~vLHdw~d~~ 155 (244)
T d1fp2a2 80 GLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLSGSNNLTYVGGDMFTS-IP--NADAVLLKYILHNWTDKD 155 (244)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCBTTEEEEECCTTTC-CC--CCSEEEEESCGGGSCHHH
T ss_pred CceEEEEecCCccHHHHHHHHhCCCCeEEEecC-HHHHHhCcccCceEEEecCcccC-CC--CCcEEEEEeecccCChHH
Confidence 3468999999999975 3589999999998 4455544333 789999999863 32 579999999999998765
Q ss_pred HHHHHHHHHHhccccC---cEEEEEEcCc
Q 016157 197 RRKKAIEELVRVVKKG---SLVLITVWAV 222 (394)
Q Consensus 197 ~~~~~L~ei~r~LkpG---G~lli~~~~~ 222 (394)
..++|+++++.|+|| |+++|.....
T Consensus 156 -~~~iL~~~~~al~pgg~~~~lli~e~~~ 183 (244)
T d1fp2a2 156 -CLRILKKCKEAVTNDGKRGKVTIIDMVI 183 (244)
T ss_dssp -HHHHHHHHHHHHSGGGCCCEEEEEECEE
T ss_pred -HHHHHHHHHHHcCcccCCcEEEEEEeec
Confidence 789999999999999 7888876543
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.61 E-value=2e-08 Score=88.64 Aligned_cols=64 Identities=30% Similarity=0.331 Sum_probs=53.2
Q ss_pred CCCEEEEEcCccCcccc---cCCCcEEEEEeCCHHHHHHHHHc--CCeEEEeecCCCCCCCCCccEEEehhh
Q 016157 122 SGSLVLDAGCGNGKYLG---LNPDCFFVGCDISPSLIKICVDR--GHEVLVADAVNLPYRSDFGDAAISIAV 188 (394)
Q Consensus 122 ~g~~VLDvGCG~G~~l~---~~~~~~v~gvD~S~~~l~~a~~~--~i~~~~~D~~~lp~~~~~fD~Vi~~~v 188 (394)
.|.+|||+|||+|.+.- ......|+|+|+++.+++.|+++ +++++.+|+.+++ +.||+|+++--
T Consensus 48 ~Gk~VLDlGcGtG~l~i~a~~~ga~~V~~vDid~~a~~~ar~N~~~~~~~~~D~~~l~---~~fD~Vi~NPP 116 (197)
T d1ne2a_ 48 GGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCGGVNFMVADVSEIS---GKYDTWIMNPP 116 (197)
T ss_dssp BTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCTTSEEEECCGGGCC---CCEEEEEECCC
T ss_pred CCCEEEEeCCCCcHHHHHHHHcCCCcccccccCHHHHHHHHHccccccEEEEehhhcC---CcceEEEeCcc
Confidence 47899999999998632 23334899999999999999988 6899999998874 67999999743
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.61 E-value=1.1e-08 Score=93.18 Aligned_cols=96 Identities=18% Similarity=0.176 Sum_probs=76.2
Q ss_pred CCCCEEEEEcCccCccc----ccCCCcEEEEEeCCHHHHHHHHHc-CCeEEEeecCCCCCCCCCccEEEehhhhhhcCCh
Q 016157 121 PSGSLVLDAGCGNGKYL----GLNPDCFFVGCDISPSLIKICVDR-GHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTE 195 (394)
Q Consensus 121 ~~g~~VLDvGCG~G~~l----~~~~~~~v~gvD~S~~~l~~a~~~-~i~~~~~D~~~lp~~~~~fD~Vi~~~vl~hl~~~ 195 (394)
....+|||||||+|.++ +..|+.++++.|+... ++.++.. +++++.+|+.+ +.+. .|+++...++|+++++
T Consensus 80 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v-i~~~~~~~r~~~~~~d~~~-~~P~--ad~~~l~~vlh~~~d~ 155 (243)
T d1kyza2 80 EGLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHV-IEDAPSYPGVEHVGGDMFV-SIPK--ADAVFMKWICHDWSDE 155 (243)
T ss_dssp SSCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTTT-TTTCCCCTTEEEEECCTTT-CCCC--CSCEECSSSSTTSCHH
T ss_pred cCCcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHHh-hhhcccCCceEEecccccc-cCCC--cceEEEEEEeecCCHH
Confidence 44578999999999975 3589999999999653 4433333 68899999865 3332 5778889999999875
Q ss_pred hHHHHHHHHHHhccccCcEEEEEEcC
Q 016157 196 SRRKKAIEELVRVVKKGSLVLITVWA 221 (394)
Q Consensus 196 ~~~~~~L~ei~r~LkpGG~lli~~~~ 221 (394)
+ ...+|++++++|+|||+++|....
T Consensus 156 ~-~~~iL~~~~~al~pgg~~li~d~~ 180 (243)
T d1kyza2 156 H-CLKFLKNCYEALPDNGKVIVAECI 180 (243)
T ss_dssp H-HHHHHHHHHHHCCSSSCEEEEECE
T ss_pred H-HHHHHHHHHHhcCCCceEEEEEEE
Confidence 5 789999999999999999998754
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.59 E-value=2.1e-08 Score=94.34 Aligned_cols=111 Identities=12% Similarity=-0.008 Sum_probs=78.2
Q ss_pred hHHHHHHHcCCCCCCEEEEEcCccCcccc--cCCCcEEEEEeCCHHHHHHHHHc---------CCeEEEeecCCCC----
Q 016157 110 WPKVATFLNSLPSGSLVLDAGCGNGKYLG--LNPDCFFVGCDISPSLIKICVDR---------GHEVLVADAVNLP---- 174 (394)
Q Consensus 110 ~~~l~~~l~~l~~g~~VLDvGCG~G~~l~--~~~~~~v~gvD~S~~~l~~a~~~---------~i~~~~~D~~~lp---- 174 (394)
|..+...+.....+.+|||++||+|.+.. ...+++|++||.|+.+++.|+++ .++++++|+...-
T Consensus 120 r~~~~~~~~~~~~~~rVLdlf~~tG~~sl~aa~~GA~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~~~l~~~~ 199 (309)
T d2igta1 120 WEWLKNAVETADRPLKVLNLFGYTGVASLVAAAAGAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREE 199 (309)
T ss_dssp HHHHHHHHHHSSSCCEEEEETCTTCHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHH
T ss_pred HHHHHHHHhhccCCCeEEEecCCCcHHHHHHHhCCCeEEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCHHHhHHHHh
Confidence 34445555556678899999999999743 34567999999999999999986 3689999987632
Q ss_pred CCCCCccEEEehh---hhh----hcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 016157 175 YRSDFGDAAISIA---VLH----HLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (394)
Q Consensus 175 ~~~~~fD~Vi~~~---vl~----hl~~~~~~~~~L~ei~r~LkpGG~lli~~~ 220 (394)
...+.||+||+.- ... ...-.......+..+.++|+|||.+++.+.
T Consensus 200 ~~~~~fD~IilDPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll~t~ 252 (309)
T d2igta1 200 RRGSTYDIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTA 252 (309)
T ss_dssp HHTCCBSEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEE
T ss_pred hcCCCCCEEEECCCcccccccchhHHHHHHHHHHHHHHHHhcCCCCCEEEEec
Confidence 3357899999831 100 000012245677788899999998666653
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=98.58 E-value=2.3e-08 Score=84.40 Aligned_cols=102 Identities=16% Similarity=0.092 Sum_probs=72.4
Q ss_pred HHHHcCCCCCCEEEEEcCccCcccc--cCCCc-EEEEEeCCHHHHHHHHHc--------CCeEEEeecCCC-CCCCCCcc
Q 016157 114 ATFLNSLPSGSLVLDAGCGNGKYLG--LNPDC-FFVGCDISPSLIKICVDR--------GHEVLVADAVNL-PYRSDFGD 181 (394)
Q Consensus 114 ~~~l~~l~~g~~VLDvGCG~G~~l~--~~~~~-~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~l-p~~~~~fD 181 (394)
..++..--.|.+|||+|||+|.+.- +.+++ +|+++|.++.+++.+++. .++++++|+... ....++||
T Consensus 6 fn~l~~~~~g~~vlDl~~GtG~~~iea~~rga~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~l~~~~~~fD 85 (152)
T d2esra1 6 FNMIGPYFNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFD 85 (152)
T ss_dssp HHHHCSCCCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEE
T ss_pred HHHHHhhCCCCeEEEcCCccCHHHHHHHHhCcceeeeehhchhhhhhhhhhhhhcccccchhhhcccccccccccccccc
Confidence 3444444468899999999998742 23443 999999999999998876 378899998763 45568899
Q ss_pred EEEehhhhhhcCChhHHHHHHHHHH--hccccCcEEEEEE
Q 016157 182 AAISIAVLHHLSTESRRKKAIEELV--RVVKKGSLVLITV 219 (394)
Q Consensus 182 ~Vi~~~vl~hl~~~~~~~~~L~ei~--r~LkpGG~lli~~ 219 (394)
+|++.--.. .......|..+. +.|+|||.+++..
T Consensus 86 iIf~DPPy~----~~~~~~~l~~i~~~~~L~~~g~iiiE~ 121 (152)
T d2esra1 86 LVFLDPPYA----KETIVATIEALAAKNLLSEQVMVVCET 121 (152)
T ss_dssp EEEECCSSH----HHHHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred eeEechhhc----cchHHHHHHHHHHCCCcCCCeEEEEEe
Confidence 999853211 111344555543 5799999998864
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=98.54 E-value=2.3e-08 Score=94.58 Aligned_cols=107 Identities=13% Similarity=0.127 Sum_probs=77.9
Q ss_pred HHcCCCCCCEEEEEcCccCcccc--cCCCc-EEEEEeCCHHHHHHHHHc---------CCeEEEeecCCC----CCCCCC
Q 016157 116 FLNSLPSGSLVLDAGCGNGKYLG--LNPDC-FFVGCDISPSLIKICVDR---------GHEVLVADAVNL----PYRSDF 179 (394)
Q Consensus 116 ~l~~l~~g~~VLDvGCG~G~~l~--~~~~~-~v~gvD~S~~~l~~a~~~---------~i~~~~~D~~~l----p~~~~~ 179 (394)
++..+.+|.+|||+.||+|.+.- ...+. .|+++|+|+.+++.|+++ +++++++|+.+. ......
T Consensus 138 l~~~~~~g~~VLdlf~~~G~~sl~aa~~ga~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~~l~~~~~~~~~ 217 (317)
T d2b78a2 138 LINGSAAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLT 217 (317)
T ss_dssp HHHTTTBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCC
T ss_pred HHHHhhCCCceeecCCCCcHHHHHHHhCCCceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHHHHHHHHHhhcCC
Confidence 45667789999999999999843 23344 799999999999999876 357899998653 223568
Q ss_pred ccEEEehhh-----hhhcCCh-hHHHHHHHHHHhccccCcEEEEEEcCc
Q 016157 180 GDAAISIAV-----LHHLSTE-SRRKKAIEELVRVVKKGSLVLITVWAV 222 (394)
Q Consensus 180 fD~Vi~~~v-----l~hl~~~-~~~~~~L~ei~r~LkpGG~lli~~~~~ 222 (394)
||+|++--- -..+... ....++++.+.++|+|||.|++++-+.
T Consensus 218 fD~Ii~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~scs~ 266 (317)
T d2b78a2 218 YDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAA 266 (317)
T ss_dssp EEEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred CCEEEEcChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCc
Confidence 999998421 0111111 114578899999999999999987543
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.44 E-value=7.6e-08 Score=85.87 Aligned_cols=99 Identities=20% Similarity=0.264 Sum_probs=71.7
Q ss_pred HHcCCCCCCEEEEEcCccCccc----cc-CCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeecCCC-C-----CC
Q 016157 116 FLNSLPSGSLVLDAGCGNGKYL----GL-NPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNL-P-----YR 176 (394)
Q Consensus 116 ~l~~l~~g~~VLDvGCG~G~~l----~~-~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~l-p-----~~ 176 (394)
++...+| .+|||+|||+|..+ .. .++.+++++|+++.+++.|++. .++++.+|..+. + +.
T Consensus 51 lv~~~kp-k~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~~e~l~~l~~~~~ 129 (214)
T d2cl5a1 51 VIREYSP-SLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYD 129 (214)
T ss_dssp HHHHHCC-SEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGHHHHSC
T ss_pred HHHhhCC-CEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCCccceeeeccccccccchhhccc
Confidence 3333344 59999999999853 22 4578999999999999999865 478999998763 2 34
Q ss_pred CCCccEEEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 016157 177 SDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 177 ~~~fD~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~ 219 (394)
.+.||+|+.-+.- +.......+.+..++|||||.+++..
T Consensus 130 ~~~~D~ifiD~~~----~~~~~~~~l~~~~~lLkpGGvIv~Dd 168 (214)
T d2cl5a1 130 VDTLDMVFLDHWK----DRYLPDTLLLEKCGLLRKGTVLLADN 168 (214)
T ss_dssp CCCEEEEEECSCG----GGHHHHHHHHHHTTCEEEEEEEEESC
T ss_pred ccccceeeecccc----cccccHHHHHHHhCccCCCcEEEEeC
Confidence 5789999976321 11113446778889999999887754
|
| >d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methyltransferase TTHA0928 species: Thermus thermophilus [TaxId: 274]
Probab=98.43 E-value=1e-07 Score=82.01 Aligned_cols=98 Identities=13% Similarity=0.099 Sum_probs=65.4
Q ss_pred CCCCCCEEEEEcCccCcccc--cCCCcEEEEEeCCHHHHHHHHHc----C--CeEEEeecCC----CCCCCCCccEEEeh
Q 016157 119 SLPSGSLVLDAGCGNGKYLG--LNPDCFFVGCDISPSLIKICVDR----G--HEVLVADAVN----LPYRSDFGDAAISI 186 (394)
Q Consensus 119 ~l~~g~~VLDvGCG~G~~l~--~~~~~~v~gvD~S~~~l~~a~~~----~--i~~~~~D~~~----lp~~~~~fD~Vi~~ 186 (394)
.+..|.+|||+|||+|.+.- ...++.++++|.++.+++.++++ + .++...+... ......+||+|++.
T Consensus 38 ~~~~g~~vLDl~~G~G~~~i~a~~~ga~vv~vD~~~~a~~~~~~N~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~If~D 117 (171)
T d1ws6a1 38 RYPRRGRFLDPFAGSGAVGLEAASEGWEAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMA 117 (171)
T ss_dssp HCTTCCEEEEETCSSCHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEEC
T ss_pred cccCCCeEEEeccccchhhhhhhhccchhhhcccCHHHHhhhhHHHHhhccccceeeeehhcccccccccCCccceeEEc
Confidence 35678899999999998642 35677999999999999999876 2 3455555432 12345789999985
Q ss_pred hhhhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 016157 187 AVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 187 ~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~ 219 (394)
--.+. ...+....++. ..+|+|||.+++..
T Consensus 118 PPY~~-~~~~~l~~l~~--~~ll~~~g~ivie~ 147 (171)
T d1ws6a1 118 PPYAM-DLAALFGELLA--SGLVEAGGLYVLQH 147 (171)
T ss_dssp CCTTS-CTTHHHHHHHH--HTCEEEEEEEEEEE
T ss_pred ccccc-CHHHHHHHHHH--cCCcCCCeEEEEEe
Confidence 43221 11111222222 35799999988754
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.38 E-value=2e-07 Score=82.17 Aligned_cols=66 Identities=17% Similarity=0.255 Sum_probs=52.7
Q ss_pred CCCEEEEEcCccCcccc--cCCC-cEEEEEeCCHHHHHHHHHc------CCeEEEeecCCCCCCCCCccEEEehhhhh
Q 016157 122 SGSLVLDAGCGNGKYLG--LNPD-CFFVGCDISPSLIKICVDR------GHEVLVADAVNLPYRSDFGDAAISIAVLH 190 (394)
Q Consensus 122 ~g~~VLDvGCG~G~~l~--~~~~-~~v~gvD~S~~~l~~a~~~------~i~~~~~D~~~lp~~~~~fD~Vi~~~vl~ 190 (394)
.|.+|||+|||+|.+.. ...+ ..|+|+|+++.+++.|+++ ..+++.+|+..+ ++.||+|+++--..
T Consensus 46 ~g~~vLDlg~GtG~l~i~a~~~g~~~v~~vdi~~~~~~~a~~N~~~~~~~~~~~~~d~~~~---~~~fD~Vi~nPP~~ 120 (201)
T d1wy7a1 46 EGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSEF---NSRVDIVIMNPPFG 120 (201)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGGC---CCCCSEEEECCCCS
T ss_pred CCCEEEECcCcchHHHHHHHHcCCCEEEEEcCcHHHHHHHHHHHHHcCCCceEEECchhhh---CCcCcEEEEcCccc
Confidence 57899999999998742 2333 5899999999999999986 457888888776 46799999976543
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.30 E-value=3.5e-07 Score=81.79 Aligned_cols=102 Identities=15% Similarity=0.102 Sum_probs=76.4
Q ss_pred HHHHHcCCCCCCEEEEEcCccCccc----cc-CCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeecCCC-C----
Q 016157 113 VATFLNSLPSGSLVLDAGCGNGKYL----GL-NPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNL-P---- 174 (394)
Q Consensus 113 l~~~l~~l~~g~~VLDvGCG~G~~l----~~-~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~l-p---- 174 (394)
+...+.......+|||||||+|.-+ .. ..+.+++.+|+++...+.|++. .++++.+|+.+. +
T Consensus 50 lL~~L~~~~~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda~e~l~~~~~ 129 (219)
T d2avda1 50 LLANLARLIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLA 129 (219)
T ss_dssp HHHHHHHHTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHH
T ss_pred HHHHHHHccCCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEEEEeehhhcchhhhh
Confidence 3444444444569999999999843 22 3467999999999999999876 478999997652 2
Q ss_pred -CCCCCccEEEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 016157 175 -YRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (394)
Q Consensus 175 -~~~~~fD~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~ 220 (394)
...++||+|+.-+- . +.....+..+.++|+|||.+++...
T Consensus 130 ~~~~~~fD~ifiD~d----k--~~y~~~~~~~~~lL~~GGvii~Dn~ 170 (219)
T d2avda1 130 AGEAGTFDVAVVDAD----K--ENCSAYYERCLQLLRPGGILAVLRV 170 (219)
T ss_dssp TTCTTCEEEEEECSC----S--TTHHHHHHHHHHHEEEEEEEEEECC
T ss_pred hcccCCccEEEEeCC----H--HHHHHHHHHHHHHhcCCcEEEEeCC
Confidence 23578999998642 1 1256788999999999999999764
|
| >d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Hypothetical protein Lmo1582 species: Listeria monocytogenes [TaxId: 1639]
Probab=98.28 E-value=4.6e-07 Score=85.39 Aligned_cols=102 Identities=22% Similarity=0.228 Sum_probs=75.1
Q ss_pred CCCCCCEEEEEcCccCccccc---------CCCcEEEEEeCCHHHHHHHHHc------CCeEEEeecCCCCCCCCCccEE
Q 016157 119 SLPSGSLVLDAGCGNGKYLGL---------NPDCFFVGCDISPSLIKICVDR------GHEVLVADAVNLPYRSDFGDAA 183 (394)
Q Consensus 119 ~l~~g~~VLDvGCG~G~~l~~---------~~~~~v~gvD~S~~~l~~a~~~------~i~~~~~D~~~lp~~~~~fD~V 183 (394)
...++.+|||.|||+|.++.. .....++|+|+++.+++.|+.. ...+..+|..... ....||+|
T Consensus 114 ~~~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~-~~~~fD~v 192 (328)
T d2f8la1 114 QKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDGLANL-LVDPVDVV 192 (328)
T ss_dssp TTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCTTSCC-CCCCEEEE
T ss_pred CCCCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhhhhhhhcccccccc-cccccccc
Confidence 345677999999999998631 3445899999999999998765 4677777776543 35789999
Q ss_pred EehhhhhhcCChhH---------------HHHHHHHHHhccccCcEEEEEEcC
Q 016157 184 ISIAVLHHLSTESR---------------RKKAIEELVRVVKKGSLVLITVWA 221 (394)
Q Consensus 184 i~~~vl~hl~~~~~---------------~~~~L~ei~r~LkpGG~lli~~~~ 221 (394)
+++--+......++ -..++..+.+.|+|||++.+.++.
T Consensus 193 i~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~I~p~ 245 (328)
T d2f8la1 193 ISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPD 245 (328)
T ss_dssp EEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEG
T ss_pred ccCCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEEEecC
Confidence 99855432222111 234799999999999999888764
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=98.13 E-value=2e-06 Score=80.68 Aligned_cols=95 Identities=19% Similarity=0.136 Sum_probs=72.9
Q ss_pred CCCCEEEEEcCccCcccc----cCCCcEEEEEeCCHHHHHHHHHc------------CCeEEEeecCCC-CCCCCCccEE
Q 016157 121 PSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR------------GHEVLVADAVNL-PYRSDFGDAA 183 (394)
Q Consensus 121 ~~g~~VLDvGCG~G~~l~----~~~~~~v~gvD~S~~~l~~a~~~------------~i~~~~~D~~~l-p~~~~~fD~V 183 (394)
+...+||.||.|.|..+. ..+..+|+++|+++.+++.|++. +++++.+|+... .-.++.||+|
T Consensus 76 ~~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvI 155 (312)
T d1uira_ 76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVV 155 (312)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEE
T ss_pred CCcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhcCCcccEE
Confidence 344699999999998643 35567999999999999999875 468899998763 2335789999
Q ss_pred Eehhh--------hhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 016157 184 ISIAV--------LHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 184 i~~~v--------l~hl~~~~~~~~~L~ei~r~LkpGG~lli~~ 219 (394)
++-.. ..++-+ .++++.+.+.|+|||.+++..
T Consensus 156 i~D~~dp~~~~~~~~~L~t----~eF~~~~~~~L~p~Gvlv~~~ 195 (312)
T d1uira_ 156 IIDLTDPVGEDNPARLLYT----VEFYRLVKAHLNPGGVMGMQT 195 (312)
T ss_dssp EEECCCCBSTTCGGGGGSS----HHHHHHHHHTEEEEEEEEEEE
T ss_pred EEeCCCcccccchhhhhhh----HHHHHHHHHhcCCCceEEEec
Confidence 96431 122333 679999999999999998864
|
| >d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Methyltransferase 10 domain domain: Methyltransferase 10 domain containing protein METT10D species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.12 E-value=2.7e-06 Score=77.35 Aligned_cols=69 Identities=10% Similarity=0.053 Sum_probs=51.1
Q ss_pred CCCEEEEEcCccCccc----ccCCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeecCCCC------CCCCCccEE
Q 016157 122 SGSLVLDAGCGNGKYL----GLNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLP------YRSDFGDAA 183 (394)
Q Consensus 122 ~g~~VLDvGCG~G~~l----~~~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~lp------~~~~~fD~V 183 (394)
+..++||+|||+|... ...++++++|+|+|+.+++.|+++ .+.++..+..... ..++.||+|
T Consensus 61 ~~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i 140 (250)
T d2h00a1 61 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFC 140 (250)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEE
T ss_pred ccceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHHHHHHhCCCcceeeeeeccHHhhhhhhhhcccCceeEE
Confidence 3468999999999853 236789999999999999999987 2456665543321 235689999
Q ss_pred Eehhhhh
Q 016157 184 ISIAVLH 190 (394)
Q Consensus 184 i~~~vl~ 190 (394)
+|+--.+
T Consensus 141 vsNPPY~ 147 (250)
T d2h00a1 141 MCNPPFF 147 (250)
T ss_dssp EECCCCC
T ss_pred EecCccc
Confidence 9976544
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=98.07 E-value=3e-06 Score=77.86 Aligned_cols=97 Identities=19% Similarity=0.168 Sum_probs=64.8
Q ss_pred CCEEEEEcCccCccc---ccCCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeecCCC-CCCCCCccEEEehhh--
Q 016157 123 GSLVLDAGCGNGKYL---GLNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNL-PYRSDFGDAAISIAV-- 188 (394)
Q Consensus 123 g~~VLDvGCG~G~~l---~~~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~l-p~~~~~fD~Vi~~~v-- 188 (394)
..++||+|||+|..+ ...+...|+|+|+|+.+++.|+++ .+.+..+|..+. +...+.||+|+++--
T Consensus 111 ~~~vld~g~GsG~i~~~la~~~~~~v~a~Dis~~Al~~A~~Na~~~~~~~~~~i~~~~~~~~~~~~~~~fDlIVsNPPYI 190 (271)
T d1nv8a_ 111 IKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFKEKFASIEMILSNPPYV 190 (271)
T ss_dssp CCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGGGGTTTCCEEEECCCCB
T ss_pred ccEEEEeeeeeehhhhhhhhcccceeeechhhhhHHHHHHHHHHHcCCCceeEEeecccccccccccCcccEEEEccccc
Confidence 358999999999853 236788999999999999999987 245667777663 233478999999621
Q ss_pred --hhhcCChh--HHH----------HHH-HHHHhccccCcEEEEEE
Q 016157 189 --LHHLSTES--RRK----------KAI-EELVRVVKKGSLVLITV 219 (394)
Q Consensus 189 --l~hl~~~~--~~~----------~~L-~ei~r~LkpGG~lli~~ 219 (394)
-..++... ++. .++ +-+.++|+|||.+++-.
T Consensus 191 ~~~~~l~~~~~~EP~~AL~gg~dGl~~~r~i~~~~L~~~G~l~~Ei 236 (271)
T d1nv8a_ 191 KSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEI 236 (271)
T ss_dssp CGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEEC
T ss_pred CcccccceeeeeccccccccccchHHHHHHHHHHhcCCCCEEEEEE
Confidence 01111100 011 112 22467899999888765
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.07 E-value=1.7e-06 Score=79.76 Aligned_cols=96 Identities=14% Similarity=0.115 Sum_probs=71.7
Q ss_pred CCCCEEEEEcCccCcccc---cCCCcEEEEEeCCHHHHHHHHHc-----------------CCeEEEeecCCCCCCCCCc
Q 016157 121 PSGSLVLDAGCGNGKYLG---LNPDCFFVGCDISPSLIKICVDR-----------------GHEVLVADAVNLPYRSDFG 180 (394)
Q Consensus 121 ~~g~~VLDvGCG~G~~l~---~~~~~~v~gvD~S~~~l~~a~~~-----------------~i~~~~~D~~~lp~~~~~f 180 (394)
+...+||-||+|.|..+. ..+..+|+++|+++.+++.|++. +++++.+|+...--.+++|
T Consensus 71 ~~p~~vLiiG~G~G~~~~~~l~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~y 150 (276)
T d1mjfa_ 71 PKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRGF 150 (276)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCCE
T ss_pred CCCceEEEecCCchHHHHHHHHhCCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhccCCC
Confidence 445699999999998653 23445899999999999999863 3678999987543345789
Q ss_pred cEEEehhh-----hhhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 016157 181 DAAISIAV-----LHHLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (394)
Q Consensus 181 D~Vi~~~v-----l~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~ 220 (394)
|+|++-.. ..++-+ .++++.+.+.|+|||.+++...
T Consensus 151 DvIi~D~~~~~~~~~~L~t----~eF~~~~~~~L~~~Gv~v~q~~ 191 (276)
T d1mjfa_ 151 DVIIADSTDPVGPAKVLFS----EEFYRYVYDALNNPGIYVTQAG 191 (276)
T ss_dssp EEEEEECCCCC-----TTS----HHHHHHHHHHEEEEEEEEEEEE
T ss_pred CEEEEeCCCCCCCcccccC----HHHHHhhHhhcCCCceEEEecC
Confidence 99997332 122222 6799999999999999988654
|
| >d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methylase YhhF species: Escherichia coli [TaxId: 562]
Probab=98.05 E-value=1.4e-06 Score=75.35 Aligned_cols=94 Identities=11% Similarity=0.095 Sum_probs=69.5
Q ss_pred CCCEEEEEcCccCcccc--cCCCc-EEEEEeCCHHHHHHHHHc-------CCeEEEeecCCC-CCCCCCccEEEehhhhh
Q 016157 122 SGSLVLDAGCGNGKYLG--LNPDC-FFVGCDISPSLIKICVDR-------GHEVLVADAVNL-PYRSDFGDAAISIAVLH 190 (394)
Q Consensus 122 ~g~~VLDvGCG~G~~l~--~~~~~-~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~l-p~~~~~fD~Vi~~~vl~ 190 (394)
.+.+|||++||+|.+.- +..|+ .|+++|.++.+++.++++ +..++.+|+... ......||+|++.--..
T Consensus 43 ~~~~vLDlfaGsG~~giealsrGa~~v~~VE~~~~a~~~~k~N~~~~~~~~~~ii~~d~~~~l~~~~~~fDlIf~DPPY~ 122 (183)
T d2fpoa1 43 VDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPPFR 122 (183)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCSSS
T ss_pred chhhhhhhhccccceeeeEEecCcceeEEEEEeechhhHHHHHHhhccccceeeeeecccccccccccccCEEEEcCccc
Confidence 46799999999999742 33454 899999999999999876 567888887653 34467899999964322
Q ss_pred hcCChhHHHHHHHHHHh--ccccCcEEEEEE
Q 016157 191 HLSTESRRKKAIEELVR--VVKKGSLVLITV 219 (394)
Q Consensus 191 hl~~~~~~~~~L~ei~r--~LkpGG~lli~~ 219 (394)
. .. ....+..+.+ .|+|+|.+++..
T Consensus 123 ~-~~---~~~~l~~l~~~~~L~~~~iIiiE~ 149 (183)
T d2fpoa1 123 R-GL---LEETINLLEDNGWLADEALIYVES 149 (183)
T ss_dssp T-TT---HHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred c-ch---HHHHHHHHHHCCCCCCCeEEEEEe
Confidence 1 11 4556666654 699999988864
|
| >d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase EF2452 species: Enterococcus faecalis [TaxId: 1351]
Probab=98.04 E-value=3.1e-06 Score=73.16 Aligned_cols=99 Identities=12% Similarity=0.089 Sum_probs=71.5
Q ss_pred HcCCCCCCEEEEEcCccCcccc--cCCCc-EEEEEeCCHHHHHHHHHc--------CCeEEEeecCCC----CCCCCCcc
Q 016157 117 LNSLPSGSLVLDAGCGNGKYLG--LNPDC-FFVGCDISPSLIKICVDR--------GHEVLVADAVNL----PYRSDFGD 181 (394)
Q Consensus 117 l~~l~~g~~VLDvGCG~G~~l~--~~~~~-~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~l----p~~~~~fD 181 (394)
+...-.|.+|||++||+|.+.- +..|+ .|+++|.++.+++.++++ +++++.+|+... ......||
T Consensus 36 l~~~~~~~~vLDlfaGsG~~g~ea~srGa~~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D~~~~l~~~~~~~~~fD 115 (182)
T d2fhpa1 36 IGPYFDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFD 115 (182)
T ss_dssp HCSCCSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEE
T ss_pred HHHhcCCCEEEEcccccccccceeeecchhHHHHHHHHHHHHHHHHHHhhhhhcccccccccccchhhhhhhcccCCCcc
Confidence 3434468999999999999742 34444 799999999999999876 478899998652 12346899
Q ss_pred EEEehhhhhhcCChhHHHHHHHHHHh--ccccCcEEEEEE
Q 016157 182 AAISIAVLHHLSTESRRKKAIEELVR--VVKKGSLVLITV 219 (394)
Q Consensus 182 ~Vi~~~vl~hl~~~~~~~~~L~ei~r--~LkpGG~lli~~ 219 (394)
+|++---.. ... ....|..+.. +|+|+|.+++..
T Consensus 116 lIflDPPY~-~~~---~~~~l~~i~~~~~L~~~giIi~E~ 151 (182)
T d2fhpa1 116 LVLLDPPYA-KQE---IVSQLEKMLERQLLTNEAVIVCET 151 (182)
T ss_dssp EEEECCCGG-GCC---HHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred eEEechhhh-hhH---HHHHHHHHHHCCCCCCCEEEEEEc
Confidence 999854321 122 4566777754 699999888764
|
| >d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RNA methyltransferase FtsJ domain: RNA methyltransferase FtsJ species: Escherichia coli [TaxId: 562]
Probab=98.02 E-value=1.9e-06 Score=74.44 Aligned_cols=103 Identities=17% Similarity=0.158 Sum_probs=74.5
Q ss_pred HcCCCCCCEEEEEcCccCccccc-----CCCcEEEEEeCCHHHHHHHHHcCCeEEEeecCCCC--------CCCCCccEE
Q 016157 117 LNSLPSGSLVLDAGCGNGKYLGL-----NPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLP--------YRSDFGDAA 183 (394)
Q Consensus 117 l~~l~~g~~VLDvGCG~G~~l~~-----~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~lp--------~~~~~fD~V 183 (394)
...++++.+|||+||++|.++.. .....++|+|+.+- ..-.+..++++|+.+.. .....||+|
T Consensus 17 ~~l~k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~----~~i~~~~~~~~d~~~~~~~~~~~~~~~~~~~DlV 92 (180)
T d1ej0a_ 17 DKLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPM----DPIVGVDFLQGDFRDELVMKALLERVGDSKVQVV 92 (180)
T ss_dssp HCCCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCC----CCCTTEEEEESCTTSHHHHHHHHHHHTTCCEEEE
T ss_pred hCccCCCCeEEEEeccCCcceEEEEeeccccceEEEeecccc----cccCCceEeecccccchhhhhhhhhccCcceeEE
Confidence 34578999999999999998653 45578999998651 01126789999987632 234689999
Q ss_pred Eehhh--------hhhcCChhHHHHHHHHHHhccccCcEEEEEEcCcc
Q 016157 184 ISIAV--------LHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVE 223 (394)
Q Consensus 184 i~~~v--------l~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~~ 223 (394)
++-.. ..|...-+....+|.-+.++||+||.|++=+|..+
T Consensus 93 lSD~ap~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K~F~g~ 140 (180)
T d1ej0a_ 93 MSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGE 140 (180)
T ss_dssp EECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESST
T ss_pred EecccchhcccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEEEecCc
Confidence 99544 33332222356778888999999999999998643
|
| >d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Escherichia coli [TaxId: 562]
Probab=98.01 E-value=6.3e-06 Score=72.69 Aligned_cols=90 Identities=16% Similarity=0.124 Sum_probs=71.9
Q ss_pred CCCEEEEEcCccCcc----cccCCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeecCCCCCCCCCccEEEehhhhh
Q 016157 122 SGSLVLDAGCGNGKY----LGLNPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFGDAAISIAVLH 190 (394)
Q Consensus 122 ~g~~VLDvGCG~G~~----l~~~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~lp~~~~~fD~Vi~~~vl~ 190 (394)
++.+|||+|+|.|.- +-..|..+++.+|.+..-+...++- +++++...++++.. ..+||+|++-++
T Consensus 65 ~~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~~-~~~fD~V~sRA~-- 141 (207)
T d1jsxa_ 65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFPS-EPPFDGVISRAF-- 141 (207)
T ss_dssp CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSCC-CSCEEEEECSCS--
T ss_pred cCCceeeeeccCCceeeehhhhcccceEEEEecchHHHHHHHHHHHHcCCcceeeeccchhhhcc-ccccceehhhhh--
Confidence 356999999999973 2347899999999999765554432 67889999998753 568999999775
Q ss_pred hcCChhHHHHHHHHHHhccccCcEEEEEE
Q 016157 191 HLSTESRRKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 191 hl~~~~~~~~~L~ei~r~LkpGG~lli~~ 219 (394)
.+ ...++.-+...+++||.+++.-
T Consensus 142 --~~---~~~ll~~~~~~l~~~g~~~~~K 165 (207)
T d1jsxa_ 142 --AS---LNDMVSWCHHLPGEQGRFYALK 165 (207)
T ss_dssp --SS---HHHHHHHHTTSEEEEEEEEEEE
T ss_pred --cC---HHHHHHHHHHhcCCCcEEEEEC
Confidence 33 6789999999999999998885
|
| >d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: DNA methylase TaqI, N-terminal domain domain: DNA methylase TaqI, N-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=97.99 E-value=2.5e-06 Score=74.92 Aligned_cols=100 Identities=23% Similarity=0.330 Sum_probs=71.7
Q ss_pred CCCCCCEEEEEcCccCccccc-----CCCcEEEEEeCCHHHHHHHHHcCCeEEEeecCCCCCCCCCccEEEehhhhhhcC
Q 016157 119 SLPSGSLVLDAGCGNGKYLGL-----NPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLS 193 (394)
Q Consensus 119 ~l~~g~~VLDvGCG~G~~l~~-----~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~lp~~~~~fD~Vi~~~vl~hl~ 193 (394)
..+++.+|||.|||+|.++.. .....++|+|+++.++..+++ ..++.+|....+. ...||+++++.......
T Consensus 16 ~~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~~~~--~~~~~~~~~~~~~-~~~fd~ii~npP~~~~~ 92 (223)
T d2ih2a1 16 EAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLPPW--AEGILADFLLWEP-GEAFDLILGNPPYGIVG 92 (223)
T ss_dssp CCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCCTT--EEEEESCGGGCCC-SSCEEEEEECCCCCCBS
T ss_pred CCCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhhccc--ceeeeeehhcccc-ccccceecccCcccccc
Confidence 356788999999999998532 445689999999987665543 4667888776553 47899999875432211
Q ss_pred Ch--------------------------hHHHHHHHHHHhccccCcEEEEEEcC
Q 016157 194 TE--------------------------SRRKKAIEELVRVVKKGSLVLITVWA 221 (394)
Q Consensus 194 ~~--------------------------~~~~~~L~ei~r~LkpGG~lli~~~~ 221 (394)
.. .--..++..+.+.|||||++.+.++.
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~I~p~ 146 (223)
T d2ih2a1 93 EASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPA 146 (223)
T ss_dssp CTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred ccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEEEEee
Confidence 00 00246688999999999999998753
|
| >d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermus thermophilus [TaxId: 274]
Probab=97.99 E-value=6.5e-06 Score=71.14 Aligned_cols=111 Identities=17% Similarity=0.217 Sum_probs=81.4
Q ss_pred HHHHHHHcCCCCCCEEEEEcCccCccccc--CCCcEEEEEeCCHHHHHHHHHc---CCeEEEeecCCCC-----CCCCCc
Q 016157 111 PKVATFLNSLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR---GHEVLVADAVNLP-----YRSDFG 180 (394)
Q Consensus 111 ~~l~~~l~~l~~g~~VLDvGCG~G~~l~~--~~~~~v~gvD~S~~~l~~a~~~---~i~~~~~D~~~lp-----~~~~~f 180 (394)
.++..++. +.+|..++|..+|.|.++.. ..+.+|+|+|..+.++..|++. ++.+++.++.++. +..+.+
T Consensus 8 ~Evl~~l~-~~~g~~~vD~T~G~GGhs~~iL~~~~~viaiD~D~~ai~~a~~~~~~~~~~~~~~f~~~~~~l~~~~~~~v 86 (182)
T d1wg8a2 8 QEALDLLA-VRPGGVYVDATLGGAGHARGILERGGRVIGLDQDPEAVARAKGLHLPGLTVVQGNFRHLKRHLAALGVERV 86 (182)
T ss_dssp HHHHHHHT-CCTTCEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHTCCTTEEEEESCGGGHHHHHHHTTCSCE
T ss_pred HHHHHhcC-CCCCCEEEEeCCCCcHHHHHHhcccCcEEEEhhhhhHHHHHhhccccceeEeehHHHHHHHHHHHcCCCcc
Confidence 34555553 57888999999999986542 3457999999999999999876 6788888887753 334679
Q ss_pred cEEEehhhh--hhcCChh----HHHHHHHHHHhccccCcEEEEEEcCc
Q 016157 181 DAAISIAVL--HHLSTES----RRKKAIEELVRVVKKGSLVLITVWAV 222 (394)
Q Consensus 181 D~Vi~~~vl--~hl~~~~----~~~~~L~ei~r~LkpGG~lli~~~~~ 222 (394)
|.|+.-..+ .++.+.. .....|......|+|||++++..|..
T Consensus 87 dgIl~DLGvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii~fhs 134 (182)
T d1wg8a2 87 DGILADLGVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVVIAFHS 134 (182)
T ss_dssp EEEEEECSCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEEECSH
T ss_pred CEEEEEccCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEEEeccc
Confidence 999874322 1222211 14568899999999999999998854
|
| >d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Caffeoyl-CoA O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=97.96 E-value=2.5e-06 Score=76.45 Aligned_cols=102 Identities=15% Similarity=0.073 Sum_probs=75.9
Q ss_pred HHHHHcCCCCCCEEEEEcCccCccc----c-cCCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeecCCC-C----
Q 016157 113 VATFLNSLPSGSLVLDAGCGNGKYL----G-LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNL-P---- 174 (394)
Q Consensus 113 l~~~l~~l~~g~~VLDvGCG~G~~l----~-~~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~l-p---- 174 (394)
+..++.......+|||||+++|.-+ . ..++.+++.+|.++...+.|++. .++++.+|+.+. +
T Consensus 50 ~L~~L~~~~~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g~a~~~L~~l~~ 129 (227)
T d1susa1 50 FLSMLLKLINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIK 129 (227)
T ss_dssp HHHHHHHHHTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHH
T ss_pred HHHHHHHhcCCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccccceeeeehHHHHHHHHHHh
Confidence 3333333334569999999999842 2 24568999999999999999876 478899998652 2
Q ss_pred --CCCCCccEEEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 016157 175 --YRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (394)
Q Consensus 175 --~~~~~fD~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~ 220 (394)
...++||+|+.-+- ...-...++.+.++|+|||.+++...
T Consensus 130 ~~~~~~~fD~iFiDa~------k~~y~~~~e~~~~ll~~gGiii~DNv 171 (227)
T d1susa1 130 DEKNHGSYDFIFVDAD------KDNYLNYHKRLIDLVKVGGVIGYDNT 171 (227)
T ss_dssp CGGGTTCBSEEEECSC------STTHHHHHHHHHHHBCTTCCEEEETT
T ss_pred ccccCCceeEEEeccc------hhhhHHHHHHHHhhcCCCcEEEEccC
Confidence 12568999998642 12257889999999999999999853
|
| >d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Bacillus subtilis, Ermc' [TaxId: 1423]
Probab=97.92 E-value=3.8e-06 Score=75.57 Aligned_cols=75 Identities=17% Similarity=0.270 Sum_probs=57.0
Q ss_pred CCCCCCEEEEEcCccCccccc--CCCcEEEEEeCCHHHHHHHHHc-----CCeEEEeecCCCCCCCCCccEEEehhhhhh
Q 016157 119 SLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR-----GHEVLVADAVNLPYRSDFGDAAISIAVLHH 191 (394)
Q Consensus 119 ~l~~g~~VLDvGCG~G~~l~~--~~~~~v~gvD~S~~~l~~a~~~-----~i~~~~~D~~~lp~~~~~fD~Vi~~~vl~h 191 (394)
.+.++.+|||||||+|.++.. ..+..++++|+++.+++.++++ +++++.+|+..++++......|+++ .=.+
T Consensus 18 ~~~~~d~VlEIGpG~G~LT~~Ll~~~~~v~avE~D~~l~~~l~~~~~~~~n~~i~~~D~l~~~~~~~~~~~vv~N-LPYn 96 (235)
T d1qama_ 18 RLNEHDNIFEIGSGKGHFTLELVQRCNFVTAIEIDHKLCKTTENKLVDHDNFQVLNKDILQFKFPKNQSYKIFGN-IPYN 96 (235)
T ss_dssp CCCTTCEEEEECCTTSHHHHHHHHHSSEEEEECSCHHHHHHHHHHTTTCCSEEEECCCGGGCCCCSSCCCEEEEE-CCGG
T ss_pred CCCCCCeEEEECCCchHHHHHHHhCcCceEEEeeccchHHHHHHHhhcccchhhhhhhhhhccccccccceeeee-ehhh
Confidence 356889999999999998653 3456899999999999999876 5899999999988765544445543 3334
Q ss_pred cCC
Q 016157 192 LST 194 (394)
Q Consensus 192 l~~ 194 (394)
+++
T Consensus 97 Iss 99 (235)
T d1qama_ 97 IST 99 (235)
T ss_dssp GHH
T ss_pred hhH
Confidence 443
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Probab=97.91 E-value=1.2e-05 Score=74.65 Aligned_cols=96 Identities=17% Similarity=0.124 Sum_probs=73.1
Q ss_pred CCCEEEEEcCccCcccc----cCCCcEEEEEeCCHHHHHHHHHc-----------CCeEEEeecCCC-CCCCCCccEEEe
Q 016157 122 SGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR-----------GHEVLVADAVNL-PYRSDFGDAAIS 185 (394)
Q Consensus 122 ~g~~VLDvGCG~G~~l~----~~~~~~v~gvD~S~~~l~~a~~~-----------~i~~~~~D~~~l-p~~~~~fD~Vi~ 185 (394)
...+||-||.|.|..++ ..+...|+++|+++.+++.|++. +++++.+|+... .-.++.||+|++
T Consensus 89 ~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi~ 168 (295)
T d1inla_ 89 NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVIII 168 (295)
T ss_dssp SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEEE
T ss_pred CCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhcCCCCCCEEEE
Confidence 34699999999998653 34556899999999999999875 468899998663 233578999997
Q ss_pred hhh------hhhcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 016157 186 IAV------LHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 221 (394)
Q Consensus 186 ~~v------l~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~ 221 (394)
-.. ..++-+ .++++.+.+.|+|||.+++...+
T Consensus 169 D~~dp~~~~~~~L~t----~efy~~~~~~L~~~Gi~v~q~~s 206 (295)
T d1inla_ 169 DSTDPTAGQGGHLFT----EEFYQACYDALKEDGVFSAETED 206 (295)
T ss_dssp EC----------CCS----HHHHHHHHHHEEEEEEEEEECCC
T ss_pred cCCCCCcCchhhhcc----HHHHHHHHhhcCCCcEEEEecCC
Confidence 432 223333 68999999999999999887644
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.85 E-value=1.3e-05 Score=74.14 Aligned_cols=98 Identities=18% Similarity=0.188 Sum_probs=73.2
Q ss_pred CCCCEEEEEcCccCcccc----cCCCcEEEEEeCCHHHHHHHHHc-----------CCeEEEeecCCC-CCCCCCccEEE
Q 016157 121 PSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR-----------GHEVLVADAVNL-PYRSDFGDAAI 184 (394)
Q Consensus 121 ~~g~~VLDvGCG~G~~l~----~~~~~~v~gvD~S~~~l~~a~~~-----------~i~~~~~D~~~l-p~~~~~fD~Vi 184 (394)
+...+||-||-|.|..++ ..+..+++.+|+.+.+++.|++. +++++.+|+... .-..++||+|+
T Consensus 77 ~~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvIi 156 (285)
T d2o07a1 77 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVII 156 (285)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEE
T ss_pred cCcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhcCCCCCCEEE
Confidence 344699999999998753 34556999999999999999874 578899997652 23357899999
Q ss_pred ehhh-----hhhcCChhHHHHHHHHHHhccccCcEEEEEEcCc
Q 016157 185 SIAV-----LHHLSTESRRKKAIEELVRVVKKGSLVLITVWAV 222 (394)
Q Consensus 185 ~~~v-----l~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~ 222 (394)
+-.. ..++- -.++++.+.+.|+|||.+++...+.
T Consensus 157 ~D~~~p~~~~~~L~----t~eF~~~~~~~L~~~Gi~v~q~~s~ 195 (285)
T d2o07a1 157 TDSSDPMGPAESLF----KESYYQLMKTALKEDGVLCCQGECQ 195 (285)
T ss_dssp EECC---------------CHHHHHHHHHEEEEEEEEEEEECT
T ss_pred EcCCCCCCcccccc----cHHHHHHHHHhcCCCCeEEEeccch
Confidence 7432 22333 2578999999999999999887654
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.79 E-value=3.5e-05 Score=71.25 Aligned_cols=98 Identities=19% Similarity=0.230 Sum_probs=74.9
Q ss_pred CCCCEEEEEcCccCcccc----cCCCcEEEEEeCCHHHHHHHHHc-----------CCeEEEeecCCCC--CCCCCccEE
Q 016157 121 PSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR-----------GHEVLVADAVNLP--YRSDFGDAA 183 (394)
Q Consensus 121 ~~g~~VLDvGCG~G~~l~----~~~~~~v~gvD~S~~~l~~a~~~-----------~i~~~~~D~~~lp--~~~~~fD~V 183 (394)
+...+||=||-|.|..++ ..+...++++|+++.+++.|++. +++++.+|+...- ..+++||+|
T Consensus 79 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~~~~~yDvI 158 (290)
T d1xj5a_ 79 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAV 158 (290)
T ss_dssp SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEE
T ss_pred CCCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhccccCccEE
Confidence 344699999999999754 23445899999999999999874 4788999976532 335689999
Q ss_pred Eehh-----hhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCc
Q 016157 184 ISIA-----VLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAV 222 (394)
Q Consensus 184 i~~~-----vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~ 222 (394)
+.-. .-.++-+ .++++.+.+.|+|||.+++...+.
T Consensus 159 i~D~~dp~~~~~~L~t----~eF~~~~~~~L~~~Gi~v~q~~s~ 198 (290)
T d1xj5a_ 159 IVDSSDPIGPAKELFE----KPFFQSVARALRPGGVVCTQAESL 198 (290)
T ss_dssp EECCCCTTSGGGGGGS----HHHHHHHHHHEEEEEEEEEECCCT
T ss_pred EEcCCCCCCcchhhCC----HHHHHHHHHhcCCCcEEEEecCCc
Confidence 9732 2233433 679999999999999999986544
|
| >d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Streptococcus pneumoniae, Ermam [TaxId: 1313]
Probab=97.73 E-value=9.8e-07 Score=80.07 Aligned_cols=75 Identities=15% Similarity=0.234 Sum_probs=59.9
Q ss_pred CCCCCCEEEEEcCccCccccc--CCCcEEEEEeCCHHHHHHHHHc-----CCeEEEeecCCCCCCCCCccEEEehhhhhh
Q 016157 119 SLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR-----GHEVLVADAVNLPYRSDFGDAAISIAVLHH 191 (394)
Q Consensus 119 ~l~~g~~VLDvGCG~G~~l~~--~~~~~v~gvD~S~~~l~~a~~~-----~i~~~~~D~~~lp~~~~~fD~Vi~~~vl~h 191 (394)
.+.++..|||||||+|.++.. ..+..|+++|+++.+++.++++ +++++.+|+++++++...++.|+++-- .|
T Consensus 26 ~~~~~d~VLEIGpG~G~LT~~L~~~~~~v~aIE~D~~l~~~l~~~~~~~~n~~ii~~D~l~~~~~~~~~~~vv~NLP-Y~ 104 (245)
T d1yuba_ 26 NLKETDTVYEIGTGKGHLTTKLAKISKQVTSIELDSHLFNLSSEKLKLNTRVTLIHQDILQFQFPNKQRYKIVGNIP-YH 104 (245)
T ss_dssp CCCSSEEEEECSCCCSSCSHHHHHHSSEEEESSSSCSSSSSSSCTTTTCSEEEECCSCCTTTTCCCSSEEEEEEECC-SS
T ss_pred CCCCCCeEEEECCCccHHHHHHHhhcCceeEeeecccchhhhhhhhhhccchhhhhhhhhccccccceeeeEeeeee-hh
Confidence 356788999999999998753 3456899999999999888765 588999999999887777776766544 46
Q ss_pred cCC
Q 016157 192 LST 194 (394)
Q Consensus 192 l~~ 194 (394)
+++
T Consensus 105 Ist 107 (245)
T d1yuba_ 105 LST 107 (245)
T ss_dssp SCH
T ss_pred hhH
Confidence 665
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Probab=97.71 E-value=3.2e-05 Score=70.94 Aligned_cols=97 Identities=18% Similarity=0.130 Sum_probs=73.7
Q ss_pred CCCCEEEEEcCccCcccc----cCCCcEEEEEeCCHHHHHHHHHc-----------CCeEEEeecCC-CCCCCCCccEEE
Q 016157 121 PSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR-----------GHEVLVADAVN-LPYRSDFGDAAI 184 (394)
Q Consensus 121 ~~g~~VLDvGCG~G~~l~----~~~~~~v~gvD~S~~~l~~a~~~-----------~i~~~~~D~~~-lp~~~~~fD~Vi 184 (394)
+...+||-||-|.|..++ ..+..+++.+|+++.+++.|++. +++++.+|+.. +.-.+++||+|+
T Consensus 74 ~~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~~~~yDvIi 153 (274)
T d1iy9a_ 74 PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIM 153 (274)
T ss_dssp SSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEE
T ss_pred CCcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHhhcCCCCCEEE
Confidence 344699999999999754 24456999999999999999875 46889999865 223457899999
Q ss_pred ehhhh-----hhcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 016157 185 SIAVL-----HHLSTESRRKKAIEELVRVVKKGSLVLITVWA 221 (394)
Q Consensus 185 ~~~vl-----~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~ 221 (394)
.-..- .++-+ .++++.+.+.|+|||.++....+
T Consensus 154 ~D~~~p~~~~~~L~t----~eFy~~~~~~L~~~Gv~v~q~~s 191 (274)
T d1iy9a_ 154 VDSTEPVGPAVNLFT----KGFYAGIAKALKEDGIFVAQTDN 191 (274)
T ss_dssp ESCSSCCSCCCCCST----THHHHHHHHHEEEEEEEEEECCC
T ss_pred EcCCCCCCcchhhcc----HHHHHHHHhhcCCCceEEEecCC
Confidence 74321 12323 58999999999999999887543
|
| >d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Hypothetical methyltransferase PH1374 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=97.68 E-value=4.9e-05 Score=70.98 Aligned_cols=116 Identities=13% Similarity=0.167 Sum_probs=82.6
Q ss_pred HHHHHcCCCCCCEEEEEcCccCcc---c-c-cCCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeecCCCCCCCCCc
Q 016157 113 VATFLNSLPSGSLVLDAGCGNGKY---L-G-LNPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFG 180 (394)
Q Consensus 113 l~~~l~~l~~g~~VLDvGCG~G~~---l-~-~~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~lp~~~~~f 180 (394)
+...+....+|.+|||++||+|.= + . ......++++|+++.-++..+++ ++.+...|...++.....|
T Consensus 107 l~~~~l~~~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~~~i~~~~~d~~~~~~~~~~f 186 (313)
T d1ixka_ 107 YPPVALDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEF 186 (313)
T ss_dssp HHHHHHCCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCCE
T ss_pred chhhcccCCccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHhhccccccccccccccccccc
Confidence 344445678999999999999972 2 2 24567899999999888776654 4566667777777667889
Q ss_pred cEEEeh------hhhhhcCC------h-------hHHHHHHHHHHhccccCcEEEEEEcCccchhhh
Q 016157 181 DAAISI------AVLHHLST------E-------SRRKKAIEELVRVVKKGSLVLITVWAVEQEDKS 228 (394)
Q Consensus 181 D~Vi~~------~vl~hl~~------~-------~~~~~~L~ei~r~LkpGG~lli~~~~~~~~~~~ 228 (394)
|.|++- +++..-++ . ....++|..+.+.|||||+++.++.+...+++.
T Consensus 187 D~ILvDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsTCSl~~eENE 253 (313)
T d1ixka_ 187 DKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEPEENE 253 (313)
T ss_dssp EEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCCGGGTH
T ss_pred cEEEEccccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEeeccCChHhHH
Confidence 999872 22221111 1 114678899999999999999999888766554
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=97.64 E-value=2.4e-05 Score=73.03 Aligned_cols=97 Identities=18% Similarity=0.160 Sum_probs=70.1
Q ss_pred CCCCEEEEEcCccCcccc----cCCCcEEEEEeCCHHHHHHHHHc-----------CCeEEEeecCCC-CCCCCCccEEE
Q 016157 121 PSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR-----------GHEVLVADAVNL-PYRSDFGDAAI 184 (394)
Q Consensus 121 ~~g~~VLDvGCG~G~~l~----~~~~~~v~gvD~S~~~l~~a~~~-----------~i~~~~~D~~~l-p~~~~~fD~Vi 184 (394)
+...+||-||-|.|..++ ..+..+|+.+|+.+.+++.|++. +++++.+|+... .-..++||+|+
T Consensus 105 ~~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~~~~~yDvII 184 (312)
T d2b2ca1 105 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVII 184 (312)
T ss_dssp SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEE
T ss_pred CCCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHhCCCCCCEEE
Confidence 344699999999998754 23446899999999999999985 467888887652 22357899999
Q ss_pred ehhhh-----hhcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 016157 185 SIAVL-----HHLSTESRRKKAIEELVRVVKKGSLVLITVWA 221 (394)
Q Consensus 185 ~~~vl-----~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~ 221 (394)
+-..- .++- -.++++.+.+.|+|||.++...-+
T Consensus 185 ~D~~dp~~~~~~L~----t~eFy~~~~~~L~~~Gi~v~q~~s 222 (312)
T d2b2ca1 185 TDSSDPVGPAESLF----GQSYYELLRDALKEDGILSSQGES 222 (312)
T ss_dssp ECCC-----------------HHHHHHHHEEEEEEEEEECCC
T ss_pred EcCCCCCCcchhhh----hHHHHHHHHhhcCCCcEEEEecCC
Confidence 84322 2222 367899999999999999987543
|
| >d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Bacillus subtilis [TaxId: 1423]
Probab=97.50 E-value=6.5e-05 Score=67.35 Aligned_cols=91 Identities=19% Similarity=0.112 Sum_probs=70.2
Q ss_pred CCCEEEEEcCccCcc---cc-cCCCcEEEEEeCCHHHHHHHH---Hc----CCeEEEeecCCCCCC---CCCccEEEehh
Q 016157 122 SGSLVLDAGCGNGKY---LG-LNPDCFFVGCDISPSLIKICV---DR----GHEVLVADAVNLPYR---SDFGDAAISIA 187 (394)
Q Consensus 122 ~g~~VLDvGCG~G~~---l~-~~~~~~v~gvD~S~~~l~~a~---~~----~i~~~~~D~~~lp~~---~~~fD~Vi~~~ 187 (394)
.+.+++|||+|.|.- +. ..|..+++-+|.+..-+...+ +. ++.++...++++... .+.||+|++-+
T Consensus 70 ~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~FL~~v~~~L~L~n~~i~~~R~E~~~~~~~~~~~~D~v~sRA 149 (239)
T d1xdza_ 70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTARA 149 (239)
T ss_dssp GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEEEC
T ss_pred CCCeEEeecCCCchHHHHHHHhCCCccceeecchHHHHHHHHHHHHHhCCCCcEEEeehhhhccccccccccceEEEEhh
Confidence 567999999999973 23 478999999999987554433 32 567788877765422 36899999976
Q ss_pred hhhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 016157 188 VLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 188 vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~ 219 (394)
+ .. ...++.-....+++||.+++.=
T Consensus 150 v----a~---l~~ll~~~~~~l~~~g~~i~~K 174 (239)
T d1xdza_ 150 V----AR---LSVLSELCLPLVKKNGLFVALK 174 (239)
T ss_dssp C----SC---HHHHHHHHGGGEEEEEEEEEEE
T ss_pred h----hC---HHHHHHHHhhhcccCCEEEEEC
Confidence 5 34 7889999999999999998875
|
| >d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.49 E-value=0.00023 Score=65.28 Aligned_cols=114 Identities=18% Similarity=0.208 Sum_probs=76.8
Q ss_pred HHHcCCCCCCEEEEEcCccCcc----cccCCCcEEEEEeCCHHHHHHHHHc----CCe--EEEeecCCCC--CCCCCccE
Q 016157 115 TFLNSLPSGSLVLDAGCGNGKY----LGLNPDCFFVGCDISPSLIKICVDR----GHE--VLVADAVNLP--YRSDFGDA 182 (394)
Q Consensus 115 ~~l~~l~~g~~VLDvGCG~G~~----l~~~~~~~v~gvD~S~~~l~~a~~~----~i~--~~~~D~~~lp--~~~~~fD~ 182 (394)
..+....+|.+|||+++|+|.= +.......++++|+++.-++..+++ ++. .+..+....+ ...+.||.
T Consensus 95 ~~~L~~~~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g~~~~~~~~~~~~~~~~~~~~~fd~ 174 (284)
T d1sqga2 95 MTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFDR 174 (284)
T ss_dssp HHHHCCCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHTTCCEEE
T ss_pred ccccCccccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHhhhhhcccccceeeeccccccchhcccccccE
Confidence 3344678899999999999972 2345567899999999877666654 443 2222222211 23467999
Q ss_pred EEe------hhhhhhcCChh-------------HHHHHHHHHHhccccCcEEEEEEcCccchhhh
Q 016157 183 AIS------IAVLHHLSTES-------------RRKKAIEELVRVVKKGSLVLITVWAVEQEDKS 228 (394)
Q Consensus 183 Vi~------~~vl~hl~~~~-------------~~~~~L~ei~r~LkpGG~lli~~~~~~~~~~~ 228 (394)
|++ .+++..-++.. ...++|..+.+.|||||+++-++-+...+++.
T Consensus 175 IL~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~~ENE 239 (284)
T d1sqga2 175 ILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLPEENS 239 (284)
T ss_dssp EEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCCGGGTH
T ss_pred EEEeccccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEeeecCchhhCH
Confidence 987 23332222210 14678899999999999999999888776654
|
| >d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CmcI-like domain: Cephalosporin hydroxylase CmcI species: Streptomyces clavuligerus [TaxId: 1901]
Probab=97.47 E-value=4e-05 Score=68.55 Aligned_cols=100 Identities=19% Similarity=0.211 Sum_probs=65.6
Q ss_pred HHHHcCCCCCCEEEEEcCccCcccc--------cCCCcEEEEEeCCHHHHHHHHH--cCCeEEEeecCCCC----CCCCC
Q 016157 114 ATFLNSLPSGSLVLDAGCGNGKYLG--------LNPDCFFVGCDISPSLIKICVD--RGHEVLVADAVNLP----YRSDF 179 (394)
Q Consensus 114 ~~~l~~l~~g~~VLDvGCG~G~~l~--------~~~~~~v~gvD~S~~~l~~a~~--~~i~~~~~D~~~lp----~~~~~ 179 (394)
..++..++|. +|||||++.|.-+. .....+++|+|+.+........ .+++++++|..+.. +....
T Consensus 73 ~eli~~~KPk-~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~~~~~~I~~i~gDs~~~~~~~~l~~~~ 151 (232)
T d2bm8a1 73 HDMLWELRPR-TIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASDMENITLHQGDCSDLTTFEHLREMA 151 (232)
T ss_dssp HHHHHHHCCS-EEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGGGCTTEEEEECCSSCSGGGGGGSSSC
T ss_pred HHHHHHhCCC-EEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhhhccccceeeeecccccHHHHHHHHhcC
Confidence 3444455654 89999999997321 2467899999998765443332 27899999976543 33456
Q ss_pred ccEEEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 016157 180 GDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 180 fD~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~ 219 (394)
+|+|+.-.. | .... ...-+ ++..+|+|||.+++..
T Consensus 152 ~dlIfID~~-H-~~~~--v~~~~-~~~~lLk~GG~iIveD 186 (232)
T d2bm8a1 152 HPLIFIDNA-H-ANTF--NIMKW-AVDHLLEEGDYFIIED 186 (232)
T ss_dssp SSEEEEESS-C-SSHH--HHHHH-HHHHTCCTTCEEEECS
T ss_pred CCEEEEcCC-c-chHH--HHHHH-HHhcccCcCCEEEEEc
Confidence 888776543 3 3221 12223 4568999999999865
|
| >d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: NOL1R species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.29 E-value=0.0008 Score=61.83 Aligned_cols=112 Identities=13% Similarity=0.094 Sum_probs=73.3
Q ss_pred HHcCCCCCCEEEEEcCccCccc----c-cCCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeecCCCCCC---CCCc
Q 016157 116 FLNSLPSGSLVLDAGCGNGKYL----G-LNPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYR---SDFG 180 (394)
Q Consensus 116 ~l~~l~~g~~VLDvGCG~G~~l----~-~~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~lp~~---~~~f 180 (394)
.+....+|.+|||+++|+|.=+ . ......++++|+++.-++..+++ ++.+...|...++.. .+.|
T Consensus 88 ~~L~~~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~~~~~~~~~d~~~~~~~~~~~~~f 167 (293)
T d2b9ea1 88 MLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEV 167 (293)
T ss_dssp HHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCGGGTTE
T ss_pred cccCCCccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCccceeeeehhhhhhccccccccee
Confidence 3445678999999999999832 1 24567999999999887777665 467788888776532 2679
Q ss_pred cEEEeh------hhhhhcCC--------h---h----HHHHHHHHHHhccccCcEEEEEEcCccchhhh
Q 016157 181 DAAISI------AVLHHLST--------E---S----RRKKAIEELVRVVKKGSLVLITVWAVEQEDKS 228 (394)
Q Consensus 181 D~Vi~~------~vl~hl~~--------~---~----~~~~~L~ei~r~LkpGG~lli~~~~~~~~~~~ 228 (394)
|.|++- +++..-++ . . .....|..+. .|+|||.++-++-+...+++.
T Consensus 168 D~VL~DaPCSg~G~~~r~p~~~~~~~~~~~~~~~l~~~Q~~il~~a~-~l~~gG~lvYsTCSl~~~ENe 235 (293)
T d2b9ea1 168 HYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHAL-TFPSLQRLVYSTCSLCQEENE 235 (293)
T ss_dssp EEEEECCCCCC------------------CCHHHHHHHHHHHHHHHT-TCTTCCEEEEEESCCCGGGTH
T ss_pred eEEeecCcccchhhhcccchhhccCCcchhhHHHHhhhhHHhHHHhh-hcccccEEEEeeccCChhHhH
Confidence 999872 23222111 0 0 0133455555 479999999998887765544
|
| >d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase HI0767 species: Haemophilus influenzae [TaxId: 727]
Probab=97.07 E-value=0.00017 Score=61.79 Aligned_cols=94 Identities=17% Similarity=0.180 Sum_probs=65.1
Q ss_pred CCCEEEEEcCccCccc-c-cCCCc-EEEEEeCCHHHHHHHHHc----C-----CeEEEeecCC---CCCCCCCccEEEeh
Q 016157 122 SGSLVLDAGCGNGKYL-G-LNPDC-FFVGCDISPSLIKICVDR----G-----HEVLVADAVN---LPYRSDFGDAAISI 186 (394)
Q Consensus 122 ~g~~VLDvGCG~G~~l-~-~~~~~-~v~gvD~S~~~l~~a~~~----~-----i~~~~~D~~~---lp~~~~~fD~Vi~~ 186 (394)
.+.+|||+-||+|.+. . ..+|+ .|+.+|.+..+++..+++ + ..+...|+.. .......||+|++-
T Consensus 43 ~~~~vLDlFaGsG~~glEalSRGA~~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~~d~~~~l~~~~~~~~fDlIFlD 122 (183)
T d2ifta1 43 HQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFLD 122 (183)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEEC
T ss_pred ccceEeecccCccceeeeeeeecceeeEEeecccchhhhHhhHHhhhcccccccccccccccccccccccCCcccEEEec
Confidence 4679999999999973 2 24455 899999999999988876 2 2444555433 23345679999985
Q ss_pred hhhhhcCChhHHHHHHHHHHh--ccccCcEEEEEE
Q 016157 187 AVLHHLSTESRRKKAIEELVR--VVKKGSLVLITV 219 (394)
Q Consensus 187 ~vl~hl~~~~~~~~~L~ei~r--~LkpGG~lli~~ 219 (394)
--... . .....|..+.. +|+++|.+++-.
T Consensus 123 PPY~~-~---~~~~~l~~l~~~~~L~~~~liiiE~ 153 (183)
T d2ifta1 123 PPFHF-N---LAEQAISLLCENNWLKPNALIYVET 153 (183)
T ss_dssp CCSSS-C---HHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred hhHhh-h---hHHHHHHHHHHhCCcCCCcEEEEEe
Confidence 43221 1 14566666654 699999988865
|
| >d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Type I restriction enzyme StySJI M protein species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=97.03 E-value=0.00032 Score=67.84 Aligned_cols=101 Identities=16% Similarity=0.287 Sum_probs=72.9
Q ss_pred CCCCCEEEEEcCccCccccc--------CC---------CcEEEEEeCCHHHHHHHHHc---------CCeEEEeecCCC
Q 016157 120 LPSGSLVLDAGCGNGKYLGL--------NP---------DCFFVGCDISPSLIKICVDR---------GHEVLVADAVNL 173 (394)
Q Consensus 120 l~~g~~VLDvGCG~G~~l~~--------~~---------~~~v~gvD~S~~~l~~a~~~---------~i~~~~~D~~~l 173 (394)
..++.+|+|.+||+|.++.. .. ...++|+|+++.+...|+-+ ...+...|....
T Consensus 160 ~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~g~~~~~~~i~~~d~l~~ 239 (425)
T d2okca1 160 PQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSPIVCEDSLEK 239 (425)
T ss_dssp CCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCCSEEECCTTTS
T ss_pred CcccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhcCCccccceeecCchhhh
Confidence 45678999999999998631 11 23589999999999998764 245777777764
Q ss_pred CCCCCCccEEEehhhhhhcCC--------------hhHHHHHHHHHHhccccCcEEEEEEcC
Q 016157 174 PYRSDFGDAAISIAVLHHLST--------------ESRRKKAIEELVRVVKKGSLVLITVWA 221 (394)
Q Consensus 174 p~~~~~fD~Vi~~~vl~hl~~--------------~~~~~~~L~ei~r~LkpGG~lli~~~~ 221 (394)
+ ....||+|+++--+..-.. ...-..+|..+.+.|+|||++.+.++.
T Consensus 240 ~-~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~iI~p~ 300 (425)
T d2okca1 240 E-PSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLPD 300 (425)
T ss_dssp C-CSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEH
T ss_pred h-cccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcCCCCeEEEEech
Confidence 3 3578999999765422111 001246899999999999999998863
|
| >d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: High level kasugamycin resistance protein KsgA species: Escherichia coli [TaxId: 562]
Probab=96.92 E-value=0.00027 Score=63.74 Aligned_cols=56 Identities=11% Similarity=0.100 Sum_probs=47.3
Q ss_pred CCCCCEEEEEcCccCccccc--CCCcEEEEEeCCHHHHHHHHHc-----CCeEEEeecCCCCC
Q 016157 120 LPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR-----GHEVLVADAVNLPY 175 (394)
Q Consensus 120 l~~g~~VLDvGCG~G~~l~~--~~~~~v~gvD~S~~~l~~a~~~-----~i~~~~~D~~~lp~ 175 (394)
+.++..|||||||+|.++.. ..+..++++|+++.+++..+++ +++++.+|+..+++
T Consensus 19 ~~~~d~vlEIGpG~G~LT~~Ll~~~~~v~aiEiD~~l~~~L~~~~~~~~~~~ii~~D~l~~~~ 81 (252)
T d1qyra_ 19 PQKGQAMVEIGPGLAALTEPVGERLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTFNF 81 (252)
T ss_dssp CCTTCCEEEECCTTTTTHHHHHTTCSCEEEECCCHHHHHHHHTCTTTGGGEEEECSCGGGCCH
T ss_pred CCCCCEEEEECCCchHHHHHHHccCCceEEEEeccchhHHHHHHhhhccchhHHhhhhhhhcc
Confidence 56788999999999998653 4556899999999999998875 58999999998764
|
| >d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: (Uracil-5-)-methyltransferase domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=96.80 E-value=0.0015 Score=61.18 Aligned_cols=92 Identities=14% Similarity=0.218 Sum_probs=64.7
Q ss_pred CCCCCEEEEEcCccCcccc--cCCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeecCCC----CCCCCCccEEEeh
Q 016157 120 LPSGSLVLDAGCGNGKYLG--LNPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNL----PYRSDFGDAAISI 186 (394)
Q Consensus 120 l~~g~~VLDvGCG~G~~l~--~~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~l----p~~~~~fD~Vi~~ 186 (394)
+.++.+|||+-||+|.+.. ......|+|+|.++.+++.|+++ +++++.+|.... +.....+|+|+..
T Consensus 210 ~~~~~~vlDLycG~G~fsl~La~~~~~V~gvE~~~~ai~~A~~na~~n~i~n~~~~~~~~~~~~~~~~~~~~~~d~vilD 289 (358)
T d1uwva2 210 VQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLD 289 (358)
T ss_dssp CCTTCEEEEESCTTTTTHHHHHTTSSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGGGTTCCSEEEEC
T ss_pred cCCCceEEEecccccccchhccccccEEEeccCcHHHHHHHHHhHHhcccccceeeecchhhhhhhhhhhhccCceEEeC
Confidence 4567899999999999853 24456999999999999999876 578999988763 2334678999874
Q ss_pred hhhhhcCChhHHHHHHHHHHhccccCcEEEEE
Q 016157 187 AVLHHLSTESRRKKAIEELVRVVKKGSLVLIT 218 (394)
Q Consensus 187 ~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~ 218 (394)
--=. - ..+.++.+.+. +|.-.++|+
T Consensus 290 PPR~-----G-~~~~~~~l~~~-~~~~ivYVS 314 (358)
T d1uwva2 290 PARA-----G-AAGVMQQIIKL-EPIRIVYVS 314 (358)
T ss_dssp CCTT-----C-CHHHHHHHHHH-CCSEEEEEE
T ss_pred CCCc-----c-HHHHHHHHHHc-CCCEEEEEe
Confidence 2110 1 23456666553 676555555
|
| >d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Probable dimethyladenosine transferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.77 E-value=0.00082 Score=61.31 Aligned_cols=67 Identities=25% Similarity=0.389 Sum_probs=52.8
Q ss_pred CCCCCCEEEEEcCccCccccc--CCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeecCCCCCCCCCccEEEehh
Q 016157 119 SLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISIA 187 (394)
Q Consensus 119 ~l~~g~~VLDvGCG~G~~l~~--~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~lp~~~~~fD~Vi~~~ 187 (394)
.+.++..|||||+|+|.++.. ..+..++++++++.+++..+++ +++++.+|+...+++ .++.|+++-
T Consensus 18 ~~~~~d~VlEIGPG~G~LT~~Ll~~~~~v~aiE~D~~l~~~L~~~~~~~~~~~~~~~i~~D~l~~~~~--~~~~vV~NL 94 (278)
T d1zq9a1 18 ALRPTDVVLEVGPGTGNMTVKLLEKAKKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLP--FFDTCVANL 94 (278)
T ss_dssp CCCTTCEEEEECCTTSTTHHHHHHHSSEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCCC--CCSEEEEEC
T ss_pred CCCCCCEEEEECCCchHHHHHHHhcCCcEEEEEEccchhHHHHHHHhhhccccchhhhHHHHhhhhhh--hhhhhhcch
Confidence 456788999999999998653 3456999999999999998764 578999999987654 345666653
|
| >d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap methylase domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 species: Dengue virus 2 [TaxId: 11060]
Probab=96.71 E-value=0.00039 Score=62.17 Aligned_cols=102 Identities=11% Similarity=0.063 Sum_probs=63.3
Q ss_pred CCCCCCEEEEEcCccCccccc----CCCcEEEEEeCCHHHHHH--HHHc---CC-eEEE-eecCCCCCCCCCccEEEehh
Q 016157 119 SLPSGSLVLDAGCGNGKYLGL----NPDCFFVGCDISPSLIKI--CVDR---GH-EVLV-ADAVNLPYRSDFGDAAISIA 187 (394)
Q Consensus 119 ~l~~g~~VLDvGCG~G~~l~~----~~~~~v~gvD~S~~~l~~--a~~~---~i-~~~~-~D~~~lp~~~~~fD~Vi~~~ 187 (394)
.+.++.+|+|+|||+|.++.. .+...+.|+|+.-...+. ..+. ++ ++.. .|+..+ .....|+|+|-.
T Consensus 63 ~~~~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG~d~~e~P~~~~~~~~ni~~~~~~~dv~~l--~~~~~D~vlcDm 140 (257)
T d2p41a1 63 LVTPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSGVDVFFI--PPERCDTLLCDI 140 (257)
T ss_dssp SSCCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCTTTS--CCCCCSEEEECC
T ss_pred CccCCCeEEEecCCCChHHHHHHhhcCCCceeEEEecCccccCCccccccccccccchhhhhHHhc--CCCcCCEEEeeC
Confidence 467888999999999997542 334577888874321100 0000 11 2221 223333 357899999965
Q ss_pred hhhhcCC----hhHHHHHHHHHHhccccCcEEEEEEcCcc
Q 016157 188 VLHHLST----ESRRKKAIEELVRVVKKGSLVLITVWAVE 223 (394)
Q Consensus 188 vl~hl~~----~~~~~~~L~ei~r~LkpGG~lli~~~~~~ 223 (394)
+-. -++ ..|..++|.-+.+.|+|||-|++-+++..
T Consensus 141 ~es-s~~~~vd~~Rtl~vLela~~wLk~gg~FvvKVl~py 179 (257)
T d2p41a1 141 GES-SPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLNPY 179 (257)
T ss_dssp CCC-CSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESCCC
T ss_pred CCC-CCCchhhhhhHHHHHHHHHHHcccCCEEEEEECCCC
Confidence 421 221 12345778888899999999999998754
|
| >d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TRM1-like domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=96.43 E-value=0.00094 Score=63.50 Aligned_cols=91 Identities=18% Similarity=0.050 Sum_probs=66.6
Q ss_pred CCCEEEEEcCccCcccc----cCCCcEEEEEeCCHHHHHHHHHc----C------------------CeEEEeecCCCC-
Q 016157 122 SGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR----G------------------HEVLVADAVNLP- 174 (394)
Q Consensus 122 ~g~~VLDvGCG~G~~l~----~~~~~~v~gvD~S~~~l~~a~~~----~------------------i~~~~~D~~~lp- 174 (394)
.+.+|||..||+|...- ..+...|++.|+|+.+++.++++ + +.+...|+..+.
T Consensus 45 ~~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~~ 124 (375)
T d2dula1 45 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA 124 (375)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred CCCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhhhH
Confidence 45699999999998632 23445899999999999999876 1 233444443322
Q ss_pred CCCCCccEEEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 016157 175 YRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 175 ~~~~~fD~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~ 219 (394)
-....||+|..-- +.+ +..+|..+.+.++.||.|.++.
T Consensus 125 ~~~~~fDvIDiDP----fGs---~~pfldsAi~a~~~~Gll~vTa 162 (375)
T d2dula1 125 ERHRYFHFIDLDP----FGS---PMEFLDTALRSAKRRGILGVTA 162 (375)
T ss_dssp HSTTCEEEEEECC----SSC---CHHHHHHHHHHEEEEEEEEEEE
T ss_pred hhcCcCCcccCCC----CCC---cHHHHHHHHHHhccCCEEEEEe
Confidence 1245799988753 334 5789999999999999999985
|
| >d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: M.EcoKI species: Escherichia coli [TaxId: 562]
Probab=96.32 E-value=0.00071 Score=67.18 Aligned_cols=133 Identities=8% Similarity=0.135 Sum_probs=72.2
Q ss_pred HHHHHHHHhhccccccc------cccchHHHHHHHc---CCCCCCEEEEEcCccCccccc--------CC----------
Q 016157 89 KYVHRVYDAIAPHFSST------RFAKWPKVATFLN---SLPSGSLVLDAGCGNGKYLGL--------NP---------- 141 (394)
Q Consensus 89 ~~v~~~Yd~~a~~y~~~------~~~~~~~l~~~l~---~l~~g~~VLDvGCG~G~~l~~--------~~---------- 141 (394)
+.+.++|+.+-..|... .+-..+.+..++. ...++.+|+|-.||+|.++.. ..
T Consensus 122 D~lG~~YE~ll~~~~~~~~~~~GqfyTP~~Iv~~mv~ll~~~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~ 201 (524)
T d2ar0a1 122 DDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQ 201 (524)
T ss_dssp -----------------------CCCCCHHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHH
T ss_pred hHHHHHHHHHHHHHHhhhccccchhccccchhHhhhhcccCccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHH
Confidence 44566676655544321 1222233333332 345678999999999998631 11
Q ss_pred ----CcEEEEEeCCHHHHHHHHHc----C--------CeEEEeecCCCC-CCCCCccEEEehhhhhhcCC----------
Q 016157 142 ----DCFFVGCDISPSLIKICVDR----G--------HEVLVADAVNLP-YRSDFGDAAISIAVLHHLST---------- 194 (394)
Q Consensus 142 ----~~~v~gvD~S~~~l~~a~~~----~--------i~~~~~D~~~lp-~~~~~fD~Vi~~~vl~hl~~---------- 194 (394)
...++|+|+++.+...|+-+ + ..+...+....+ .....||+|+++--+.--..
T Consensus 202 ~~~~~~~~~G~E~~~~~~~la~~nl~l~~~~~~i~~~~~~~~~~~l~~d~~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~ 281 (524)
T d2ar0a1 202 DFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHP 281 (524)
T ss_dssp HHHHHTSEEEEESCHHHHHHHHHHHHTTTCCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSC
T ss_pred HHHHHhhhhhhccCHHHHHHHHHHHHhhcccccccccchhhhhhhhhhcccccccceeEEecCCccccccccchhhhccc
Confidence 12589999999999988754 2 123334433322 23467999999754321110
Q ss_pred -hhHHHHHHHHHHhccccCcEEEEEEcC
Q 016157 195 -ESRRKKAIEELVRVVKKGSLVLITVWA 221 (394)
Q Consensus 195 -~~~~~~~L~ei~r~LkpGG~lli~~~~ 221 (394)
..--..+|..+.+.|||||++.+.++.
T Consensus 282 ~~~~~~~Fi~~~l~~Lk~gGr~aiIlP~ 309 (524)
T d2ar0a1 282 TSNKQLCFMQHIIETLHPGGRAAVVVPD 309 (524)
T ss_dssp CSCHHHHHHHHHHHHEEEEEEEEEEEEH
T ss_pred cccccHHHHHHHHHhccccCcEEEEEeh
Confidence 000245899999999999999998863
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=95.96 E-value=0.0045 Score=53.06 Aligned_cols=101 Identities=18% Similarity=0.183 Sum_probs=69.5
Q ss_pred cCCCCCCEEEEEcCccCc-cc----ccCCCcEEEEEeCCHHHHHHHHHcCCeEEEeecCCCCC--------CCCCccEEE
Q 016157 118 NSLPSGSLVLDAGCGNGK-YL----GLNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPY--------RSDFGDAAI 184 (394)
Q Consensus 118 ~~l~~g~~VLDvGCG~G~-~l----~~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~lp~--------~~~~fD~Vi 184 (394)
..+++|.+||-+|||... ++ .......|+++|.++.-++.|++.+......... .++ ....+|+++
T Consensus 21 a~v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~-~~~~~~i~~~t~g~g~D~vi 99 (195)
T d1kola2 21 AGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGFEIADLSLD-TPLHEQIAALLGEPEVDCAV 99 (195)
T ss_dssp TTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCEEEETTSS-SCHHHHHHHHHSSSCEEEEE
T ss_pred hCCCCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhccccEEEeCCC-cCHHHHHHHHhCCCCcEEEE
Confidence 568899999999999743 32 2244459999999999999999998776543222 111 234589988
Q ss_pred ehhhhh------h-cCChhHHHHHHHHHHhccccCcEEEEEEc
Q 016157 185 SIAVLH------H-LSTESRRKKAIEELVRVVKKGSLVLITVW 220 (394)
Q Consensus 185 ~~~vl~------h-l~~~~~~~~~L~ei~r~LkpGG~lli~~~ 220 (394)
-..... + +.... ....|+.+.++++|||++.+.-.
T Consensus 100 d~vG~~~~~~~~~~~~~~~-~~~~l~~~~~~~r~gG~v~~~G~ 141 (195)
T d1kola2 100 DAVGFEARGHGHEGAKHEA-PATVLNSLMQVTRVAGKIGIPGL 141 (195)
T ss_dssp ECCCTTCBCSSTTGGGSBC-TTHHHHHHHHHEEEEEEEEECSC
T ss_pred ECccccccCCcccceeecC-cHHHHHHHHHHHhcCCEEEEeee
Confidence 643311 1 11111 35789999999999999988753
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=95.94 E-value=0.0083 Score=49.55 Aligned_cols=94 Identities=20% Similarity=0.268 Sum_probs=65.4
Q ss_pred CCCCCCEEEEEcCccC-ccc---ccCCCcEEEEEeCCHHHHHHHHHcCCeE-EEeecCCCC----------CCCCCccEE
Q 016157 119 SLPSGSLVLDAGCGNG-KYL---GLNPDCFFVGCDISPSLIKICVDRGHEV-LVADAVNLP----------YRSDFGDAA 183 (394)
Q Consensus 119 ~l~~g~~VLDvGCG~G-~~l---~~~~~~~v~gvD~S~~~l~~a~~~~i~~-~~~D~~~lp----------~~~~~fD~V 183 (394)
.+++|.+||=+|||.- .++ ....+.+|+++|.++.-++.|++.+... +..+..... .....+|+|
T Consensus 23 ~~~~g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~~r~~~a~~~ga~~~~~~~~~~~~~~~~~~~~~~~~g~g~D~v 102 (170)
T d1e3ja2 23 GVQLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIGDLPNVT 102 (170)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHSSSCCSEE
T ss_pred CCCCCCEEEEEcccccchhhHhhHhhhcccccccchHHHHHHHHHHcCCcEEEeccccccccchhhhhhhcccccCCcee
Confidence 5788999999999843 221 1245679999999999999999986543 333322111 012458988
Q ss_pred EehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 016157 184 ISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 221 (394)
Q Consensus 184 i~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~ 221 (394)
+-... -...+..+.++|+|+|++++....
T Consensus 103 id~~g---------~~~~~~~a~~~~~~~G~iv~~G~~ 131 (170)
T d1e3ja2 103 IDCSG---------NEKCITIGINITRTGGTLMLVGMG 131 (170)
T ss_dssp EECSC---------CHHHHHHHHHHSCTTCEEEECSCC
T ss_pred eecCC---------ChHHHHHHHHHHhcCCceEEEecC
Confidence 86532 246788889999999999887543
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.88 E-value=0.0069 Score=50.30 Aligned_cols=95 Identities=14% Similarity=0.148 Sum_probs=68.0
Q ss_pred CCCCCCEEEEEcCccCcccc----cCCCc-EEEEEeCCHHHHHHHHHcCCeEEEeecCCCC---------CCCCCccEEE
Q 016157 119 SLPSGSLVLDAGCGNGKYLG----LNPDC-FFVGCDISPSLIKICVDRGHEVLVADAVNLP---------YRSDFGDAAI 184 (394)
Q Consensus 119 ~l~~g~~VLDvGCG~G~~l~----~~~~~-~v~gvD~S~~~l~~a~~~~i~~~~~D~~~lp---------~~~~~fD~Vi 184 (394)
.+.+|.+||=+|||....+. ...+. .|+++|.++.-++.|++.|.+.....-.+.+ -....+|+|+
T Consensus 23 ~~~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~~~~~~~~~g~g~Dvvi 102 (171)
T d1pl8a2 23 GVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCKPEVTI 102 (171)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTSCCSEEE
T ss_pred CCCCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHhCCcccccccccccccccccccccCCCCceEEE
Confidence 57889999999998765432 23444 8999999999999999988765444322211 0124689888
Q ss_pred ehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCc
Q 016157 185 SIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAV 222 (394)
Q Consensus 185 ~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~~ 222 (394)
-... -...++.+.+.++|||++++.....
T Consensus 103 d~~G---------~~~~~~~a~~~~~~gG~iv~~G~~~ 131 (171)
T d1pl8a2 103 ECTG---------AEASIQAGIYATRSGGTLVLVGLGS 131 (171)
T ss_dssp ECSC---------CHHHHHHHHHHSCTTCEEEECSCCC
T ss_pred eccC---------CchhHHHHHHHhcCCCEEEEEecCC
Confidence 7543 2467889999999999999876543
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.57 E-value=0.0036 Score=52.03 Aligned_cols=95 Identities=15% Similarity=-0.009 Sum_probs=63.6
Q ss_pred cCCCCCCEEEEEcCcc-Cccc---ccCCCcEEEEEeCCHHHHHHHHHcCCeEEEeecCCCC---CCCCCccEEEehhhhh
Q 016157 118 NSLPSGSLVLDAGCGN-GKYL---GLNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLP---YRSDFGDAAISIAVLH 190 (394)
Q Consensus 118 ~~l~~g~~VLDvGCG~-G~~l---~~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~lp---~~~~~fD~Vi~~~vl~ 190 (394)
..+++|.+||-+|+|. |.++ ....+++++++|.++..++.|++.|.+.......+.. ...+.||+++....-.
T Consensus 23 ~~~~~g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~k~~~a~~lGa~~~i~~~~~~~~~~~~~~~~d~vi~~~~~~ 102 (168)
T d1piwa2 23 NGCGPGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMKMGADHYIATLEEGDWGEKYFDTFDLIVVCASSL 102 (168)
T ss_dssp TTCSTTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTCSEEEEGGGTSCHHHHSCSCEEEEEECCSCS
T ss_pred hCcCCCCEEEEECCCCcchhHHHHhhhccccccccccchhHHHHhhccCCcEEeeccchHHHHHhhhcccceEEEEecCC
Confidence 4678999999999983 3332 1245789999999999999999987654332222211 1235799888753221
Q ss_pred hcCChhHHHHHHHHHHhccccCcEEEEEE
Q 016157 191 HLSTESRRKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 191 hl~~~~~~~~~L~ei~r~LkpGG~lli~~ 219 (394)
+- ..+....++|+|+|++++.-
T Consensus 103 ~~-------~~~~~~~~~l~~~G~iv~~G 124 (168)
T d1piwa2 103 TD-------IDFNIMPKAMKVGGRIVSIS 124 (168)
T ss_dssp TT-------CCTTTGGGGEEEEEEEEECC
T ss_pred cc-------chHHHHHHHhhccceEEEec
Confidence 11 12445788999999998864
|
| >d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Salicylic acid carboxyl methyltransferase (SAMT) domain: Salicylic acid carboxyl methyltransferase (SAMT) species: Clarkia breweri [TaxId: 36903]
Probab=95.56 E-value=0.013 Score=54.94 Aligned_cols=101 Identities=14% Similarity=0.089 Sum_probs=68.6
Q ss_pred CEEEEEcCccCcccc--------------------cCCCcEEEEEeCCHHHHHHHHHc--------C---CeEEEeecCC
Q 016157 124 SLVLDAGCGNGKYLG--------------------LNPDCFFVGCDISPSLIKICVDR--------G---HEVLVADAVN 172 (394)
Q Consensus 124 ~~VLDvGCG~G~~l~--------------------~~~~~~v~gvD~S~~~l~~a~~~--------~---i~~~~~D~~~ 172 (394)
-+|.|+||.+|..+- ..|..+|.--|+-.+=-...=+. + +..+-+.+..
T Consensus 53 ~~IADlGCS~G~Ntl~~v~~iI~~i~~~~~~~~~~~~pe~qvf~nDLP~NDFNtLF~~L~~~~~~~~~~f~~gvpGSFY~ 132 (359)
T d1m6ex_ 53 LAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSFYG 132 (359)
T ss_dssp ECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCSSS
T ss_pred eEEEEeCCCCCccHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCcchHHHHHHhccccccCCCCeEEEecCCchhh
Confidence 468999999998531 13456788888755422211111 1 1224455555
Q ss_pred CCCCCCCccEEEehhhhhhcCCh------------------------------hHHHHHHHHHHhccccCcEEEEEEcCc
Q 016157 173 LPYRSDFGDAAISIAVLHHLSTE------------------------------SRRKKAIEELVRVVKKGSLVLITVWAV 222 (394)
Q Consensus 173 lp~~~~~fD~Vi~~~vl~hl~~~------------------------------~~~~~~L~ei~r~LkpGG~lli~~~~~ 222 (394)
--|++++.+++++...|||++.. .+...+|+.=++-|+|||++++...+.
T Consensus 133 rLfP~~Slh~~~Ss~alHWLS~vP~~l~~n~~~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~GG~mvl~~~gr 212 (359)
T d1m6ex_ 133 RLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTILGR 212 (359)
T ss_dssp CCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEEEEC
T ss_pred hcCCCCceEEeeehhhhhhhhcCCccccCCCCcEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEEEecc
Confidence 55889999999999999998630 024567777788899999999998876
Q ss_pred cc
Q 016157 223 EQ 224 (394)
Q Consensus 223 ~~ 224 (394)
..
T Consensus 213 ~~ 214 (359)
T d1m6ex_ 213 RS 214 (359)
T ss_dssp SS
T ss_pred CC
Confidence 54
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=95.55 E-value=0.0069 Score=50.84 Aligned_cols=92 Identities=14% Similarity=0.171 Sum_probs=63.0
Q ss_pred CCCCCCEEEEEcCcc-Cccc---ccCCCc-EEEEEeCCHHHHHHHHHcCCeEEEeecCCCC-----------CCCCCccE
Q 016157 119 SLPSGSLVLDAGCGN-GKYL---GLNPDC-FFVGCDISPSLIKICVDRGHEVLVADAVNLP-----------YRSDFGDA 182 (394)
Q Consensus 119 ~l~~g~~VLDvGCG~-G~~l---~~~~~~-~v~gvD~S~~~l~~a~~~~i~~~~~D~~~lp-----------~~~~~fD~ 182 (394)
.+++|.+||-+|+|. |.++ ....++ .|+++|.++.-++.|++.|.+... |..+.. .....+|+
T Consensus 25 ~~~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi-~~~~~~~~~~~~~i~~~~~~~g~Dv 103 (182)
T d1vj0a2 25 ESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGADLTL-NRRETSVEERRKAIMDITHGRGADF 103 (182)
T ss_dssp SCCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTCSEEE-ETTTSCHHHHHHHHHHHTTTSCEEE
T ss_pred CCCCCCEEEEECCCccchhheecccccccccccccccccccccccccccceEEE-eccccchHHHHHHHHHhhCCCCceE
Confidence 467899999999873 3332 124455 899999999999999988764332 222211 11235899
Q ss_pred EEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 016157 183 AISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (394)
Q Consensus 183 Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~ 220 (394)
|+-... . ...++...++|+|||++++.-.
T Consensus 104 vid~vG-----~----~~~~~~a~~~l~~~G~iv~~G~ 132 (182)
T d1vj0a2 104 ILEATG-----D----SRALLEGSELLRRGGFYSVAGV 132 (182)
T ss_dssp EEECSS-----C----TTHHHHHHHHEEEEEEEEECCC
T ss_pred EeecCC-----c----hhHHHHHHHHhcCCCEEEEEee
Confidence 886432 1 3467888999999999987754
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=95.27 E-value=0.018 Score=47.70 Aligned_cols=103 Identities=14% Similarity=0.155 Sum_probs=70.1
Q ss_pred chHHHHHHHcCCCCCCEEEEEcCccCccc-----ccCCCcEEEEEeCCHHHHHHHHHcCCe-EEEeecCCCC-----CCC
Q 016157 109 KWPKVATFLNSLPSGSLVLDAGCGNGKYL-----GLNPDCFFVGCDISPSLIKICVDRGHE-VLVADAVNLP-----YRS 177 (394)
Q Consensus 109 ~~~~l~~~l~~l~~g~~VLDvGCG~G~~l-----~~~~~~~v~gvD~S~~~l~~a~~~~i~-~~~~D~~~lp-----~~~ 177 (394)
.|..+......++||..||=+|+|....+ +......++++|.++.-++.+++.+.. ++..+-.... ...
T Consensus 19 a~~al~~~~~~~~~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~~~~~~~ 98 (172)
T d1h2ba2 19 AYRAVKKAARTLYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERLGADHVVDARRDPVKQVMELTRG 98 (172)
T ss_dssp HHHHHHHHHTTCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHTTCSEEEETTSCHHHHHHHHTTT
T ss_pred HHHHHHHhhhccCCCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhhcccceeecCcccHHHHHHHhhCC
Confidence 34555555556789999999999876542 223445899999999999999988654 3322211110 123
Q ss_pred CCccEEEehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 016157 178 DFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (394)
Q Consensus 178 ~~fD~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~ 220 (394)
..+|+|+-... -...++...+.|++||++++.-.
T Consensus 99 ~g~d~vid~~g---------~~~~~~~a~~~l~~~G~iv~~G~ 132 (172)
T d1h2ba2 99 RGVNVAMDFVG---------SQATVDYTPYLLGRMGRLIIVGY 132 (172)
T ss_dssp CCEEEEEESSC---------CHHHHHHGGGGEEEEEEEEECCC
T ss_pred CCceEEEEecC---------cchHHHHHHHHHhCCCEEEEEeC
Confidence 45898886543 24578889999999999998753
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=95.14 E-value=0.012 Score=49.22 Aligned_cols=94 Identities=17% Similarity=0.167 Sum_probs=64.6
Q ss_pred cCCCCCCEEEEEcCcc-Cccc---ccCCCc-EEEEEeCCHHHHHHHHHcCCeEEEeecCCCC--------CCCCCccEEE
Q 016157 118 NSLPSGSLVLDAGCGN-GKYL---GLNPDC-FFVGCDISPSLIKICVDRGHEVLVADAVNLP--------YRSDFGDAAI 184 (394)
Q Consensus 118 ~~l~~g~~VLDvGCG~-G~~l---~~~~~~-~v~gvD~S~~~l~~a~~~~i~~~~~D~~~lp--------~~~~~fD~Vi 184 (394)
..+++|.+||=+|||. |.++ ....+. .|+++|.++.-++.|++.|..... |..+-+ .....+|+|+
T Consensus 23 a~~~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~lGa~~~i-~~~~~~~~~~v~~~t~g~G~D~vi 101 (174)
T d1jqba2 23 ADIEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYGATDIL-NYKNGHIEDQVMKLTNGKGVDRVI 101 (174)
T ss_dssp TTCCTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHHTCSEEE-CGGGSCHHHHHHHHTTTSCEEEEE
T ss_pred hCCCCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHhhCccccc-cccchhHHHHHHHHhhccCcceEE
Confidence 4678999999999985 4432 124454 799999999999999988754322 222111 1124589987
Q ss_pred ehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 016157 185 SIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 221 (394)
Q Consensus 185 ~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~~ 221 (394)
-... . ...+.+..++|+|+|++++.-+.
T Consensus 102 d~~g-----~----~~~~~~a~~~~~~~G~iv~~G~~ 129 (174)
T d1jqba2 102 MAGG-----G----SETLSQAVKMVKPGGIISNINYH 129 (174)
T ss_dssp ECSS-----C----TTHHHHHHHHEEEEEEEEECCCC
T ss_pred EccC-----C----HHHHHHHHHHHhcCCEEEEEeec
Confidence 7543 1 34677888999999999987543
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.91 E-value=0.024 Score=46.93 Aligned_cols=91 Identities=14% Similarity=0.138 Sum_probs=64.5
Q ss_pred cCCCCCCEEEEEcCc--cCccc---ccCCCcEEEEEeCCHHHHHHHHHcCCeEEEeecCCCC--------CCCCCccEEE
Q 016157 118 NSLPSGSLVLDAGCG--NGKYL---GLNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLP--------YRSDFGDAAI 184 (394)
Q Consensus 118 ~~l~~g~~VLDvGCG--~G~~l---~~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~lp--------~~~~~fD~Vi 184 (394)
..+.+|.+||-.|++ .|..+ ....++++++++.+++-++.+++.+...+. |..+.. .....+|+|+
T Consensus 24 ~~~~~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~~~~~~~~~Ga~~vi-~~~~~~~~~~i~~~t~~~g~d~v~ 102 (174)
T d1yb5a2 24 ACVKAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQNGAHEVF-NHREVNYIDKIKKYVGEKGIDIII 102 (174)
T ss_dssp SCCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEE-ETTSTTHHHHHHHHHCTTCEEEEE
T ss_pred hCCCCCCEEEEEeccccccccccccccccCcccccccccccccccccccCccccc-ccccccHHHHhhhhhccCCceEEe
Confidence 357899999999973 33332 235678999999999989999988765432 333322 1245699999
Q ss_pred ehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 016157 185 SIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 185 ~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~ 219 (394)
.... ...+....++|+|+|+++..-
T Consensus 103 d~~g----------~~~~~~~~~~l~~~G~iv~~G 127 (174)
T d1yb5a2 103 EMLA----------NVNLSKDLSLLSHGGRVIVVG 127 (174)
T ss_dssp ESCH----------HHHHHHHHHHEEEEEEEEECC
T ss_pred eccc----------HHHHHHHHhccCCCCEEEEEe
Confidence 7542 245778889999999998863
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.72 E-value=0.025 Score=46.20 Aligned_cols=93 Identities=15% Similarity=0.178 Sum_probs=65.2
Q ss_pred cCCCCCCEEEEEcCccCcccc----cCCCcEEEEEeCCHHHHHHHHHcCCeEEEeecCCCC------CCCCCccEEEehh
Q 016157 118 NSLPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLP------YRSDFGDAAISIA 187 (394)
Q Consensus 118 ~~l~~g~~VLDvGCG~G~~l~----~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~lp------~~~~~fD~Vi~~~ 187 (394)
..+.||.+||=.|+|+-..+. ...+.+|+++|.++.-++.+++.+...+.....+.. ...+.+|+|++.
T Consensus 23 ~~~~~g~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~~r~~~~k~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~v~~~- 101 (168)
T d1rjwa2 23 TGAKPGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKELGADLVVNPLKEDAAKFMKEKVGGVHAAVVTA- 101 (168)
T ss_dssp HTCCTTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCSEEECTTTSCHHHHHHHHHSSEEEEEESS-
T ss_pred hCCCCCCEEEEeecccchhhhhHHHhcCCCeEeccCCCHHHhhhhhhcCcceecccccchhhhhcccccCCCceEEeec-
Confidence 357899999999998765432 256678999999999999999988776654433311 112344444432
Q ss_pred hhhhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 016157 188 VLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (394)
Q Consensus 188 vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~ 220 (394)
+ -...+....++|+|||++++...
T Consensus 102 ~---------~~~~~~~a~~~l~~~G~i~~~g~ 125 (168)
T d1rjwa2 102 V---------SKPAFQSAYNSIRRGGACVLVGL 125 (168)
T ss_dssp C---------CHHHHHHHHHHEEEEEEEEECCC
T ss_pred C---------CHHHHHHHHHHhccCCceEeccc
Confidence 1 14578899999999999988753
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=94.60 E-value=0.04 Score=45.85 Aligned_cols=95 Identities=14% Similarity=0.095 Sum_probs=66.3
Q ss_pred cCCCCCCEEEEEcCcc-Cccc----ccCCCcEEEEEeCCHHHHHHHHHcCCeEEEeec-CCCC-------CCCCCccEEE
Q 016157 118 NSLPSGSLVLDAGCGN-GKYL----GLNPDCFFVGCDISPSLIKICVDRGHEVLVADA-VNLP-------YRSDFGDAAI 184 (394)
Q Consensus 118 ~~l~~g~~VLDvGCG~-G~~l----~~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~-~~lp-------~~~~~fD~Vi 184 (394)
..+++|.+||=+|||. |.++ +......|+.+|+++.-++.|++.+........ .+.. ...+-+|+++
T Consensus 24 a~v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~~G~d~vi 103 (174)
T d1e3ia2 24 AKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATDCLNPRELDKPVQDVITELTAGGVDYSL 103 (174)
T ss_dssp SCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHHTSCBSEEE
T ss_pred hCCCCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHhCCCcccCCccchhhhhhhHhhhhcCCCcEEE
Confidence 4578999999999997 4432 223334899999999999999998765433211 1111 1235689987
Q ss_pred ehhhhhhcCChhHHHHHHHHHHhccccC-cEEEEEEcC
Q 016157 185 SIAVLHHLSTESRRKKAIEELVRVVKKG-SLVLITVWA 221 (394)
Q Consensus 185 ~~~vl~hl~~~~~~~~~L~ei~r~LkpG-G~lli~~~~ 221 (394)
-... -...+.+..+.|+|| |++++.-..
T Consensus 104 e~~G---------~~~~~~~a~~~~~~g~G~~v~vG~~ 132 (174)
T d1e3ia2 104 DCAG---------TAQTLKAAVDCTVLGWGSCTVVGAK 132 (174)
T ss_dssp ESSC---------CHHHHHHHHHTBCTTTCEEEECCCS
T ss_pred Eecc---------cchHHHHHHHHhhcCCeEEEecCCC
Confidence 6543 256889999999997 999887543
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=94.57 E-value=0.021 Score=47.42 Aligned_cols=92 Identities=11% Similarity=0.081 Sum_probs=64.1
Q ss_pred CCCCCCEEEEEcCccCccc-----ccCCCcEEEEEeCCHHHHHHHHHcCC-eEEEeecCCCC-----CCCCCccEEEehh
Q 016157 119 SLPSGSLVLDAGCGNGKYL-----GLNPDCFFVGCDISPSLIKICVDRGH-EVLVADAVNLP-----YRSDFGDAAISIA 187 (394)
Q Consensus 119 ~l~~g~~VLDvGCG~G~~l-----~~~~~~~v~gvD~S~~~l~~a~~~~i-~~~~~D~~~lp-----~~~~~fD~Vi~~~ 187 (394)
.+++|.+||=+|||.-..+ +......++++|.++.-++.+++.+. .++..+-.+.. +.++.||+|+-.-
T Consensus 25 ~~~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~Ga~~~i~~~~~~~~~~i~~~t~gg~D~vid~~ 104 (174)
T d1f8fa2 25 KVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATHVINSKTQDPVAAIKEITDGGVNFALEST 104 (174)
T ss_dssp CCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTSCEEEEEECS
T ss_pred CCCCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHcCCeEEEeCCCcCHHHHHHHHcCCCCcEEEEcC
Confidence 5789999999999854432 22334478899999999999999875 44433222211 2245789988643
Q ss_pred hhhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 016157 188 VLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 188 vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~ 219 (394)
. -...++.+.++++|+|++++.-
T Consensus 105 G---------~~~~~~~~~~~~~~~G~i~~~G 127 (174)
T d1f8fa2 105 G---------SPEILKQGVDALGILGKIAVVG 127 (174)
T ss_dssp C---------CHHHHHHHHHTEEEEEEEEECC
T ss_pred C---------cHHHHHHHHhcccCceEEEEEe
Confidence 2 2467888999999999998764
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=93.79 E-value=0.034 Score=45.62 Aligned_cols=93 Identities=17% Similarity=0.211 Sum_probs=63.9
Q ss_pred CCCCCCEEEEEcCc--cCcc----cccCCCcEEEEEeCCHHHHHHHHHcCCeEEE-eecCCCC------CCCCCccEEEe
Q 016157 119 SLPSGSLVLDAGCG--NGKY----LGLNPDCFFVGCDISPSLIKICVDRGHEVLV-ADAVNLP------YRSDFGDAAIS 185 (394)
Q Consensus 119 ~l~~g~~VLDvGCG--~G~~----l~~~~~~~v~gvD~S~~~l~~a~~~~i~~~~-~D~~~lp------~~~~~fD~Vi~ 185 (394)
.+.++.+||=+||+ .|.+ +.......|+++|.++.-++.+++.+.+... .+-.+.. .....||+++.
T Consensus 24 ~~~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~~d~vid 103 (170)
T d1jvba2 24 SLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGADYVINASMQDPLAEIRRITESKGVDAVID 103 (170)
T ss_dssp TCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTSCEEEEEE
T ss_pred CCCCCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHcCCceeeccCCcCHHHHHHHHhhcccchhhhc
Confidence 57889999999974 2332 2224446999999999999999988764432 2222110 12356899987
Q ss_pred hhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 016157 186 IAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (394)
Q Consensus 186 ~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~ 220 (394)
... -...++.+.+.|+|||++++.-.
T Consensus 104 ~~g---------~~~~~~~a~~~l~~~G~iv~~G~ 129 (170)
T d1jvba2 104 LNN---------SEKTLSVYPKALAKQGKYVMVGL 129 (170)
T ss_dssp SCC---------CHHHHTTGGGGEEEEEEEEECCS
T ss_pred ccc---------cchHHHhhhhhcccCCEEEEecc
Confidence 543 24667788999999999987743
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=93.39 E-value=0.05 Score=44.38 Aligned_cols=91 Identities=12% Similarity=0.152 Sum_probs=60.4
Q ss_pred cCCCCCCEEEEEcCccCccc----ccCCCcEEEEEeCCHHHHHHHHHcCCeEEEeecCCCC-------CCCCCccEEEeh
Q 016157 118 NSLPSGSLVLDAGCGNGKYL----GLNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLP-------YRSDFGDAAISI 186 (394)
Q Consensus 118 ~~l~~g~~VLDvGCG~G~~l----~~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~lp-------~~~~~fD~Vi~~ 186 (394)
..+++|.+||=+|+|.=..+ ....+.+|+++|.++.-++.+++.+.+... |..+-. ...+.+|.|++.
T Consensus 23 ~~~~~g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~~~~~~a~~~Ga~~~i-~~~~~~~~~~~~~~~~g~~~~i~~~ 101 (166)
T d1llua2 23 TNARPGQWVAISGIGGLGHVAVQYARAMGLHVAAIDIDDAKLELARKLGASLTV-NARQEDPVEAIQRDIGGAHGVLVTA 101 (166)
T ss_dssp HTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSEEE-ETTTSCHHHHHHHHHSSEEEEEECC
T ss_pred hCCCCCCEEEEeeccccHHHHHHHHHHcCCccceecchhhHHHhhhccCccccc-cccchhHHHHHHHhhcCCccccccc
Confidence 35788999999999763332 124468999999999999999998764332 222211 112333444432
Q ss_pred hhhhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 016157 187 AVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 187 ~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~ 219 (394)
. -...+....++|+|||++++.-
T Consensus 102 ~----------~~~~~~~~~~~l~~~G~iv~~G 124 (166)
T d1llua2 102 V----------SNSAFGQAIGMARRGGTIALVG 124 (166)
T ss_dssp S----------CHHHHHHHHTTEEEEEEEEECC
T ss_pred c----------cchHHHHHHHHhcCCcEEEEEE
Confidence 2 1356788899999999998864
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=92.09 E-value=0.19 Score=41.47 Aligned_cols=93 Identities=9% Similarity=0.057 Sum_probs=60.4
Q ss_pred CCCCCCEEEEEcCccCccc-----ccCCCcEEEEEeCCHHHHHHHHHcCCeEEEeecCC-CC-------CCCCCccEEEe
Q 016157 119 SLPSGSLVLDAGCGNGKYL-----GLNPDCFFVGCDISPSLIKICVDRGHEVLVADAVN-LP-------YRSDFGDAAIS 185 (394)
Q Consensus 119 ~l~~g~~VLDvGCG~G~~l-----~~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~-lp-------~~~~~fD~Vi~ 185 (394)
.+++|..||=+|||....+ +.....+|+++|++++-++.|++.+.+.....-.. .. .....+|+++-
T Consensus 26 ~~~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~GA~~~in~~~~~~~~~~~~~~~~g~G~d~vi~ 105 (176)
T d1d1ta2 26 KVKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVGATECISPKDSTKPISEVLSEMTGNNVGYTFE 105 (176)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHHTSCCCEEEE
T ss_pred CCCCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhcCCcEEECccccchHHHHHHHHhccccceEEEE
Confidence 4789999999999866543 22344689999999999999999976544322211 11 12346888776
Q ss_pred hhhhhhcCChhHHHHHHHHHHh-ccccCcEEEEEEc
Q 016157 186 IAVLHHLSTESRRKKAIEELVR-VVKKGSLVLITVW 220 (394)
Q Consensus 186 ~~vl~hl~~~~~~~~~L~ei~r-~LkpGG~lli~~~ 220 (394)
... ....+..... +++++|++++.-.
T Consensus 106 ~~g---------~~~~~~~a~~~~~~~~G~~v~vG~ 132 (176)
T d1d1ta2 106 VIG---------HLETMIDALASCHMNYGTSVVVGV 132 (176)
T ss_dssp CSC---------CHHHHHHHHTTSCTTTCEEEECSC
T ss_pred eCC---------chHHHHHHHHHhhcCCeEEEEEEc
Confidence 533 1334444444 4456689888753
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=91.62 E-value=0.18 Score=41.02 Aligned_cols=93 Identities=17% Similarity=0.130 Sum_probs=63.2
Q ss_pred cCCCCCCEEEEEcCccCccc-----ccCCCcEEEEEeCCHHHHHHHHHcCCeEEEeecCC-CC-------CCCCCccEEE
Q 016157 118 NSLPSGSLVLDAGCGNGKYL-----GLNPDCFFVGCDISPSLIKICVDRGHEVLVADAVN-LP-------YRSDFGDAAI 184 (394)
Q Consensus 118 ~~l~~g~~VLDvGCG~G~~l-----~~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~-lp-------~~~~~fD~Vi 184 (394)
..++||.+||=+|||....+ +......|+++|.++.-++.+++.|.+........ .+ ...+.+|+|+
T Consensus 24 ~~~~~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~lGa~~~i~~~~~~~~~~~~~~~~~~~g~D~vi 103 (176)
T d2fzwa2 24 AKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATECINPQDFSKPIQEVLIEMTDGGVDYSF 103 (176)
T ss_dssp TCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHTTSCBSEEE
T ss_pred hCCCCCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHHhCCcEEEeCCchhhHHHHHHHHHcCCCCcEee
Confidence 35789999999999833221 22334589999999999999999876544322211 11 1134689998
Q ss_pred ehhhhhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 016157 185 SIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 185 ~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~ 219 (394)
-... ...+++.+..++++||.+++..
T Consensus 104 d~~G---------~~~~~~~~~~~~~~g~~~~~v~ 129 (176)
T d2fzwa2 104 ECIG---------NVKVMRAALEACHKGWGVSVVV 129 (176)
T ss_dssp ECSC---------CHHHHHHHHHTBCTTTCEEEEC
T ss_pred ecCC---------CHHHHHHHHHhhcCCceeEEEE
Confidence 7543 2467788899999998876654
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=90.94 E-value=0.26 Score=40.49 Aligned_cols=95 Identities=13% Similarity=0.108 Sum_probs=62.0
Q ss_pred cCCCCCCEEEEEcCccCccc-----ccCCCcEEEEEeCCHHHHHHHHHcCCeEEEe-ecCCCC-------CCCCCccEEE
Q 016157 118 NSLPSGSLVLDAGCGNGKYL-----GLNPDCFFVGCDISPSLIKICVDRGHEVLVA-DAVNLP-------YRSDFGDAAI 184 (394)
Q Consensus 118 ~~l~~g~~VLDvGCG~G~~l-----~~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~-D~~~lp-------~~~~~fD~Vi 184 (394)
..+++|.+||=+|||....+ +......|+++|+++.-++.|++.+.+.... .-.+.. ...+-+|+++
T Consensus 23 a~~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~lGa~~~i~~~~~d~~~~~~~~~~~~~G~d~vi 102 (174)
T d1p0fa2 23 AKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGATECLNPKDYDKPIYEVICEKTNGGVDYAV 102 (174)
T ss_dssp TCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEE
T ss_pred hCCCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHHcCCcEEEcCCCchhHHHHHHHHhcCCCCcEEE
Confidence 35789999999999866543 2233458999999999999999997654432 111111 1234578887
Q ss_pred ehhhhhhcCChhHHHHHHHHHHhcccc-CcEEEEEEcC
Q 016157 185 SIAVLHHLSTESRRKKAIEELVRVVKK-GSLVLITVWA 221 (394)
Q Consensus 185 ~~~vl~hl~~~~~~~~~L~ei~r~Lkp-GG~lli~~~~ 221 (394)
-... ....+......+++ +|++++.-..
T Consensus 103 d~~g---------~~~~~~~~~~~~~~~~G~~v~vG~~ 131 (174)
T d1p0fa2 103 ECAG---------RIETMMNALQSTYCGSGVTVVLGLA 131 (174)
T ss_dssp ECSC---------CHHHHHHHHHTBCTTTCEEEECCCC
T ss_pred EcCC---------CchHHHHHHHHHHHhcCceEEEEEe
Confidence 6533 23455666666654 6898887543
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=90.09 E-value=0.26 Score=40.62 Aligned_cols=91 Identities=14% Similarity=0.057 Sum_probs=64.4
Q ss_pred CCCCCCEEEEEcCccCcc-----cccCCCcEEEEEeCCHHHHHHHHHcCCeEEEeecCCCC-------CCCCCccEEEeh
Q 016157 119 SLPSGSLVLDAGCGNGKY-----LGLNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLP-------YRSDFGDAAISI 186 (394)
Q Consensus 119 ~l~~g~~VLDvGCG~G~~-----l~~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~lp-------~~~~~fD~Vi~~ 186 (394)
.+++|.+||=.|++.|.- +....+++|++++.+++-++.+++.+...+...-.... ....-+|+|+-.
T Consensus 26 ~v~~G~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~~~~~~~~~Gvd~v~D~ 105 (182)
T d1v3va2 26 GVKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQIGFDAAFNYKTVNSLEEALKKASPDGYDCYFDN 105 (182)
T ss_dssp CCCSSCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEETTSCSCHHHHHHHHCTTCEEEEEES
T ss_pred CCCCCCEEEEEeCCCchhHHHHHHHHccCCEEEEeCCCHHHHHHHHhhhhhhhcccccccHHHHHHHHhhcCCCceeEEe
Confidence 578999999888866542 12356789999999999999999987654432221111 123568998874
Q ss_pred hhhhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 016157 187 AVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 187 ~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~ 219 (394)
-. ...+++..++|+|||+++++-
T Consensus 106 vG----------~~~~~~~~~~l~~~G~~v~~G 128 (182)
T d1v3va2 106 VG----------GEFLNTVLSQMKDFGKIAICG 128 (182)
T ss_dssp SC----------HHHHHHHGGGEEEEEEEEECC
T ss_pred cC----------chhhhhhhhhccCCCeEEeec
Confidence 32 356788999999999998863
|
| >d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Transcription factor sc-mtTFB species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.79 E-value=0.12 Score=47.38 Aligned_cols=52 Identities=19% Similarity=0.087 Sum_probs=41.9
Q ss_pred CCCEEEEEcCccCccccc----CCCcEEEEEeCCHHHHHHHHHc----CCeEEEeecCCC
Q 016157 122 SGSLVLDAGCGNGKYLGL----NPDCFFVGCDISPSLIKICVDR----GHEVLVADAVNL 173 (394)
Q Consensus 122 ~g~~VLDvGCG~G~~l~~----~~~~~v~gvD~S~~~l~~a~~~----~i~~~~~D~~~l 173 (394)
.+..|||||.|.|.++.. ....+++++|+.+.+++..+++ ++.++.+|+..+
T Consensus 43 ~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~~~~~L~~~~~~~~~~ii~~D~l~~ 102 (322)
T d1i4wa_ 43 EELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFEGSPLQILKRDPYDW 102 (322)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTTTSSCEEECSCTTCH
T ss_pred CCCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhccCCCcEEEeCchhhc
Confidence 457899999999998643 1224899999999999988876 588999998753
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=89.56 E-value=0.48 Score=38.49 Aligned_cols=93 Identities=12% Similarity=0.058 Sum_probs=62.3
Q ss_pred cCCCCCCEEEEEcCccCccc-----ccCCCcEEEEEeCCHHHHHHHHHcCCeEEEeecC--CCC------CCCCCccEEE
Q 016157 118 NSLPSGSLVLDAGCGNGKYL-----GLNPDCFFVGCDISPSLIKICVDRGHEVLVADAV--NLP------YRSDFGDAAI 184 (394)
Q Consensus 118 ~~l~~g~~VLDvGCG~G~~l-----~~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~--~lp------~~~~~fD~Vi 184 (394)
..+++|.+||=+|+|.+..+ .......|+++|.+++-++.+++.+......... +.. ...+.+|+|+
T Consensus 24 ~~vk~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~~G~D~vi 103 (176)
T d2jhfa2 24 AKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVNPQDYKKPIQEVLTEMSNGGVDFSF 103 (176)
T ss_dssp TCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEE
T ss_pred hCCCCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHhCCeeEEecCCchhHHHHHHHHHhcCCCCEEE
Confidence 35889999999999865432 2355569999999999999999987654433221 110 1235689988
Q ss_pred ehhhhhhcCChhHHHHHHHHHHhccccC-cEEEEEE
Q 016157 185 SIAVLHHLSTESRRKKAIEELVRVVKKG-SLVLITV 219 (394)
Q Consensus 185 ~~~vl~hl~~~~~~~~~L~ei~r~LkpG-G~lli~~ 219 (394)
-.... ...+......+++| |.+++..
T Consensus 104 d~~G~---------~~~~~~a~~~~~~~~g~~~~~~ 130 (176)
T d2jhfa2 104 EVIGR---------LDTMVTALSCCQEAYGVSVIVG 130 (176)
T ss_dssp ECSCC---------HHHHHHHHHHBCTTTCEEEECS
T ss_pred ecCCc---------hhHHHHHHHHHhcCCcceEEec
Confidence 76542 34566677778886 5555543
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=88.94 E-value=0.2 Score=40.94 Aligned_cols=91 Identities=7% Similarity=-0.020 Sum_probs=64.0
Q ss_pred CCCCCCEEEEEcCccCc--cc---ccCCCcEEEEEeCCHHHHHHHHHcCCeEEEeecCCCCC--------CCCCccEEEe
Q 016157 119 SLPSGSLVLDAGCGNGK--YL---GLNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPY--------RSDFGDAAIS 185 (394)
Q Consensus 119 ~l~~g~~VLDvGCG~G~--~l---~~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~lp~--------~~~~fD~Vi~ 185 (394)
.++||.+||=.|+|.|. ++ ....+++|++++.|++-++.+++.|.+.+. |..+-++ ....+|+|+.
T Consensus 25 ~l~~g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~k~~~~~~lGa~~vi-~~~~~d~~~~v~~~t~g~g~d~v~d 103 (179)
T d1qora2 25 EIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALKAGAWQVI-NYREEDLVERLKEITGGKKVRVVYD 103 (179)
T ss_dssp CCCTTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHTCSEEE-ETTTSCHHHHHHHHTTTCCEEEEEE
T ss_pred CCCCCCEEEEEccccccchHHHHHHHHhCCeEeecccchHHHHHHHhcCCeEEE-ECCCCCHHHHHHHHhCCCCeEEEEe
Confidence 57889999999777654 32 235678999999999999999988765332 3333221 2356898877
Q ss_pred hhhhhhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 016157 186 IAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (394)
Q Consensus 186 ~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~~~ 220 (394)
...- ..+......|+|+|++++...
T Consensus 104 ~~g~----------~~~~~~~~~l~~~G~~v~~g~ 128 (179)
T d1qora2 104 SVGR----------DTWERSLDCLQRRGLMVSFGN 128 (179)
T ss_dssp CSCG----------GGHHHHHHTEEEEEEEEECCC
T ss_pred CccH----------HHHHHHHHHHhcCCeeeeccc
Confidence 5432 245678889999999877643
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=88.55 E-value=0.099 Score=42.70 Aligned_cols=92 Identities=13% Similarity=0.117 Sum_probs=62.9
Q ss_pred cCCCCCCEEEEEcCcc-Cccc---ccCCCcEEEEEeCCHHHHHHHHHcCCeEEEeecCCCC---CCCCCccEEEehhhhh
Q 016157 118 NSLPSGSLVLDAGCGN-GKYL---GLNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLP---YRSDFGDAAISIAVLH 190 (394)
Q Consensus 118 ~~l~~g~~VLDvGCG~-G~~l---~~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~lp---~~~~~fD~Vi~~~vl~ 190 (394)
..+++|.+||=+|||. |.++ ....++.++++|.+++-++.+++.+..... |..+.. ...+.+|+++....
T Consensus 26 ~~~~~G~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~~~~~a~~lGad~~i-~~~~~~~~~~~~~~~D~vid~~g-- 102 (168)
T d1uufa2 26 WQAGPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKALGADEVV-NSRNADEMAAHLKSFDFILNTVA-- 102 (168)
T ss_dssp TTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTCSEEE-ETTCHHHHHTTTTCEEEEEECCS--
T ss_pred hCCCCCCEEEEeccchHHHHHHHHhhcccccchhhccchhHHHHHhccCCcEEE-ECchhhHHHHhcCCCceeeeeee--
Confidence 4678999999999875 2221 124578889999999999999888765432 222111 12356898886542
Q ss_pred hcCChhHHHHHHHHHHhccccCcEEEEEE
Q 016157 191 HLSTESRRKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 191 hl~~~~~~~~~L~ei~r~LkpGG~lli~~ 219 (394)
. ...+....+.|+|||++++.-
T Consensus 103 ---~----~~~~~~~~~~l~~~G~iv~~G 124 (168)
T d1uufa2 103 ---A----PHNLDDFTTLLKRDGTMTLVG 124 (168)
T ss_dssp ---S----CCCHHHHHTTEEEEEEEEECC
T ss_pred ---c----chhHHHHHHHHhcCCEEEEec
Confidence 1 234667789999999999874
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=88.38 E-value=0.51 Score=38.18 Aligned_cols=92 Identities=14% Similarity=0.078 Sum_probs=60.7
Q ss_pred cCCCCCCEEEEEcCccCccc-----ccCCCcEEEEEeCCHHHHHHHHHcCCeEEEe-ecCCCC-------CCCCCccEEE
Q 016157 118 NSLPSGSLVLDAGCGNGKYL-----GLNPDCFFVGCDISPSLIKICVDRGHEVLVA-DAVNLP-------YRSDFGDAAI 184 (394)
Q Consensus 118 ~~l~~g~~VLDvGCG~G~~l-----~~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~-D~~~lp-------~~~~~fD~Vi 184 (394)
..+++|.+||=+|+|.+..+ .......|+++|.+++-++.|++.|.+.... .-.+.. ....-+|+++
T Consensus 24 a~~k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~~GAd~~in~~~~~~~~~~~~~~~~~~G~d~vi 103 (175)
T d1cdoa2 24 AKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGATDFVNPNDHSEPISQVLSKMTNGGVDFSL 103 (175)
T ss_dssp TCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCCEEECGGGCSSCHHHHHHHHHTSCBSEEE
T ss_pred hCCCCCCEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHHHcCCcEEEcCCCcchhHHHHHHhhccCCcceee
Confidence 35889999999999986643 2355568999999999999999997644332 111111 1124588887
Q ss_pred ehhhhhhcCChhHHHHHHHHHHhccccCcEEEEE
Q 016157 185 SIAVLHHLSTESRRKKAIEELVRVVKKGSLVLIT 218 (394)
Q Consensus 185 ~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~ 218 (394)
-... ...++..+...+++||..++.
T Consensus 104 d~~G---------~~~~~~~a~~~~~~g~~~~~~ 128 (175)
T d1cdoa2 104 ECVG---------NVGVMRNALESCLKGWGVSVL 128 (175)
T ss_dssp ECSC---------CHHHHHHHHHTBCTTTCEEEE
T ss_pred eecC---------CHHHHHHHHHHhhCCCcceeE
Confidence 6543 235566777777666544443
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=86.17 E-value=0.81 Score=36.70 Aligned_cols=86 Identities=17% Similarity=0.143 Sum_probs=56.0
Q ss_pred EEEEEcCcc-Cccc-----ccCCCcEEEEEeCCHHHHHHHHHcCCe-EEEeecCCCCCCCCCccEEEehhhhhhcCChhH
Q 016157 125 LVLDAGCGN-GKYL-----GLNPDCFFVGCDISPSLIKICVDRGHE-VLVADAVNLPYRSDFGDAAISIAVLHHLSTESR 197 (394)
Q Consensus 125 ~VLDvGCG~-G~~l-----~~~~~~~v~gvD~S~~~l~~a~~~~i~-~~~~D~~~lp~~~~~fD~Vi~~~vl~hl~~~~~ 197 (394)
+|+=||||. |.-+ ......+|+|+|.+++.++.|++.++- ....+.... .....|+|+..--.. .
T Consensus 3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~dlIila~p~~------~ 74 (171)
T d2g5ca2 3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKV--EDFSPDFVMLSSPVR------T 74 (171)
T ss_dssp EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCGGGG--GGTCCSEEEECSCHH------H
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhhcchhhhhhhhhh--hccccccccccCCch------h
Confidence 577799986 4422 124456899999999999999998642 222232222 234568888754322 2
Q ss_pred HHHHHHHHHhccccCcEEEEEE
Q 016157 198 RKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 198 ~~~~L~ei~r~LkpGG~lli~~ 219 (394)
....+.++...++++-. ++.+
T Consensus 75 ~~~vl~~l~~~~~~~~i-i~d~ 95 (171)
T d2g5ca2 75 FREIAKKLSYILSEDAT-VTDQ 95 (171)
T ss_dssp HHHHHHHHHHHSCTTCE-EEEC
T ss_pred hhhhhhhhhcccccccc-cccc
Confidence 56788899999988754 4443
|
| >d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhiQ-like domain: Hypothetical protein YhiQ species: Shigella flexneri [TaxId: 623]
Probab=85.24 E-value=0.25 Score=43.46 Aligned_cols=69 Identities=17% Similarity=0.153 Sum_probs=48.7
Q ss_pred CEEEEEcCccCcccc--cCCCcEEEEEeCCHHHHHHHHH---c-------------CCeEEEeecCC-CCCCCCCccEEE
Q 016157 124 SLVLDAGCGNGKYLG--LNPDCFFVGCDISPSLIKICVD---R-------------GHEVLVADAVN-LPYRSDFGDAAI 184 (394)
Q Consensus 124 ~~VLDvGCG~G~~l~--~~~~~~v~gvD~S~~~l~~a~~---~-------------~i~~~~~D~~~-lp~~~~~fD~Vi 184 (394)
.+|||.-||.|..+- ...++.|+++|.++.+....++ + +++++.+|..+ +.-....||+|+
T Consensus 90 ~~VlD~TaGlG~Da~vlA~~G~~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds~~~L~~~~~~~DvIY 169 (250)
T d2oyra1 90 PDVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQVVY 169 (250)
T ss_dssp CCEEETTCTTCHHHHHHHHHTCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTCSSCCSEEE
T ss_pred CEEEECCCcccHHHHHHHhCCCEEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcHHHHHhccCCCCCEEE
Confidence 489999999998532 2346799999999975433221 1 47899999765 332356799999
Q ss_pred ehhhhhhc
Q 016157 185 SIAVLHHL 192 (394)
Q Consensus 185 ~~~vl~hl 192 (394)
.--.+.+-
T Consensus 170 lDPMFp~~ 177 (250)
T d2oyra1 170 LDPMFPHK 177 (250)
T ss_dssp ECCCCCCC
T ss_pred ECCCCccc
Confidence 87666544
|
| >d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.PvuII N4 cytosine-specific DNA methyltransferase species: Proteus vulgaris [TaxId: 585]
Probab=85.00 E-value=0.22 Score=44.10 Aligned_cols=42 Identities=14% Similarity=0.130 Sum_probs=36.8
Q ss_pred CCCCCEEEEEcCccCcccc--cCCCcEEEEEeCCHHHHHHHHHc
Q 016157 120 LPSGSLVLDAGCGNGKYLG--LNPDCFFVGCDISPSLIKICVDR 161 (394)
Q Consensus 120 l~~g~~VLDvGCG~G~~l~--~~~~~~v~gvD~S~~~l~~a~~~ 161 (394)
-++|..|||.=||+|..+. ..-+...+|+|++++.++.|++|
T Consensus 248 s~~gdiVlDpF~GSGTT~~AA~~lgR~~Ig~El~~~y~~~a~~R 291 (320)
T d1booa_ 248 TEPDDLVVDIFGGSNTTGLVAERESRKWISFEMKPEYVAASAFR 291 (320)
T ss_dssp CCTTCEEEETTCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHGG
T ss_pred ccCCCEEEecCCCCcHHHHHHHHcCCcEEEEeCCHHHHHHHHHH
Confidence 4688999999999999754 35678999999999999999987
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=84.73 E-value=0.47 Score=38.62 Aligned_cols=90 Identities=16% Similarity=0.054 Sum_probs=61.8
Q ss_pred cCCCCCCEEEEEcCc--cCccc---ccCCCcEEEEEeCCHHHHHHHHHcCCeEEEeecCCCC--------CCCCCccEEE
Q 016157 118 NSLPSGSLVLDAGCG--NGKYL---GLNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLP--------YRSDFGDAAI 184 (394)
Q Consensus 118 ~~l~~g~~VLDvGCG--~G~~l---~~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~lp--------~~~~~fD~Vi 184 (394)
..+.+|.+||=.|.. .|.++ ....+..+++++.+++-.+.+++.+...+. |..+.. .....||+|+
T Consensus 21 ~~~~~g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~~~~~~l~~~Ga~~vi-~~~~~~~~~~v~~~t~~~g~d~v~ 99 (183)
T d1pqwa_ 21 GRLSPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSRLGVEYVG-DSRSVDFADEILELTDGYGVDVVL 99 (183)
T ss_dssp SCCCTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHTTCCSEEE-ETTCSTHHHHHHHHTTTCCEEEEE
T ss_pred hCCCCCCEEEEECCCCCcccccchhhccccccceeeecccccccccccccccccc-cCCccCHHHHHHHHhCCCCEEEEE
Confidence 357889999988742 23332 124578999999899889999988765443 222222 1235699999
Q ss_pred ehhhhhhcCChhHHHHHHHHHHhccccCcEEEEE
Q 016157 185 SIAVLHHLSTESRRKKAIEELVRVVKKGSLVLIT 218 (394)
Q Consensus 185 ~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~lli~ 218 (394)
.... ...+..+.++|+|+|+++..
T Consensus 100 d~~g----------~~~~~~~~~~l~~~G~~v~~ 123 (183)
T d1pqwa_ 100 NSLA----------GEAIQRGVQILAPGGRFIEL 123 (183)
T ss_dssp ECCC----------THHHHHHHHTEEEEEEEEEC
T ss_pred eccc----------chHHHHHHHHhcCCCEEEEE
Confidence 8543 23567788999999998886
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=83.66 E-value=0.22 Score=40.81 Aligned_cols=90 Identities=14% Similarity=0.143 Sum_probs=60.7
Q ss_pred cCCCCCCEEEEEcC-cc-Cccc---ccCCCcEEEEEeCCHHHHHHHHHcCCeEEEeecCCCC---CCCCCccEEEehhhh
Q 016157 118 NSLPSGSLVLDAGC-GN-GKYL---GLNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLP---YRSDFGDAAISIAVL 189 (394)
Q Consensus 118 ~~l~~g~~VLDvGC-G~-G~~l---~~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~lp---~~~~~fD~Vi~~~vl 189 (394)
..+++|.+||=.|. |. |.++ ....+++|++++.+++-++.+++.+.+... |..+.+ -....+|+|+-...
T Consensus 23 ~~~~~g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~~~~~~~~lGa~~~i-~~~~~~~~~~~~~g~D~v~d~~G- 100 (171)
T d1iz0a2 23 AQARPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLALGAEEAA-TYAEVPERAKAWGGLDLVLEVRG- 100 (171)
T ss_dssp TTCCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHHTTCSEEE-EGGGHHHHHHHTTSEEEEEECSC-
T ss_pred hCCCCCCEEEEEeccccchhhhhhhhcccccccccccccccccccccccccceee-ehhhhhhhhhccccccccccccc-
Confidence 46789999999885 33 3332 235678999999999989999988765443 333221 11346899886422
Q ss_pred hhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 016157 190 HHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (394)
Q Consensus 190 ~hl~~~~~~~~~L~ei~r~LkpGG~lli~~ 219 (394)
. .+....++|+|||+++.+-
T Consensus 101 ----~------~~~~~~~~l~~~G~~v~~G 120 (171)
T d1iz0a2 101 ----K------EVEESLGLLAHGGRLVYIG 120 (171)
T ss_dssp ----T------THHHHHTTEEEEEEEEEC-
T ss_pred ----h------hHHHHHHHHhcCCcEEEEe
Confidence 1 2456788999999998763
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=82.86 E-value=0.21 Score=41.87 Aligned_cols=90 Identities=20% Similarity=0.222 Sum_probs=60.9
Q ss_pred CCEEEEEcCccCccc----ccCCCcEEEEEeCCHHHHHHHHHcCCeEEEeecCC-------------CC--CC-------
Q 016157 123 GSLVLDAGCGNGKYL----GLNPDCFFVGCDISPSLIKICVDRGHEVLVADAVN-------------LP--YR------- 176 (394)
Q Consensus 123 g~~VLDvGCG~G~~l----~~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~-------------lp--~~------- 176 (394)
..+||=||+|.-.+. ...-++.|+++|++...++..++.+-.++..+... +. +.
T Consensus 29 pa~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~~~~~~l~~l~~~~i~~~~~~~~~~~~~~gyA~~~s~~~~~~~~~~l 108 (183)
T d1l7da1 29 PARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQAEAV 108 (183)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHHTTCEECCC-----------------------CCHHHHH
T ss_pred CcEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhhcceEEEeccccccccccccchhhcCHHHHHHHHHHH
Confidence 358999999986652 23578899999999999999988765554322111 00 00
Q ss_pred ---CCCccEEEehhhhhhcCChhHHHHHHHHHHhccccCcEE
Q 016157 177 ---SDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLV 215 (394)
Q Consensus 177 ---~~~fD~Vi~~~vl~hl~~~~~~~~~L~ei~r~LkpGG~l 215 (394)
-...|+||....+..-.. |.-+-+++.+.+|||..+
T Consensus 109 ~~~l~~aDlVI~talipG~~a---P~lit~~mv~~Mk~GSVI 147 (183)
T d1l7da1 109 LKELVKTDIAITTALIPGKPA---PVLITEEMVTKMKPGSVI 147 (183)
T ss_dssp HHHHTTCSEEEECCCCTTSCC---CCCSCHHHHTTSCTTCEE
T ss_pred HHHHHhhhhheeeeecCCccc---ceeehHHHHHhcCCCcEE
Confidence 125799998876665444 455678899999998653
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=80.60 E-value=1.6 Score=34.68 Aligned_cols=82 Identities=16% Similarity=0.163 Sum_probs=54.0
Q ss_pred EEEEEcCcc-Cc-ccc--cCCCcEEEEEeCCHHHHHHHHHcCC-eEEEeecCCCCCCCCCccEEEehhhhhhcCChhHHH
Q 016157 125 LVLDAGCGN-GK-YLG--LNPDCFFVGCDISPSLIKICVDRGH-EVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRK 199 (394)
Q Consensus 125 ~VLDvGCG~-G~-~l~--~~~~~~v~gvD~S~~~l~~a~~~~i-~~~~~D~~~lp~~~~~fD~Vi~~~vl~hl~~~~~~~ 199 (394)
+|.=||+|. |. ++. ...+.+|++.|++++.++.+++.++ .....+...+ ...|+|+..- +. ....
T Consensus 2 kI~iIG~G~mG~~lA~~l~~~g~~V~~~d~~~~~~~~a~~~~~~~~~~~~~~~~----~~~DiIilav-----p~-~~~~ 71 (165)
T d2f1ka2 2 KIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVERQLVDEAGQDLSLL----QTAKIIFLCT-----PI-QLIL 71 (165)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTSCSEEESCGGGG----TTCSEEEECS-----CH-HHHH
T ss_pred EEEEEeecHHHHHHHHHHHHCCCEEEEEECCchHHHHHHHhhccceeeeecccc----cccccccccC-----cH-hhhh
Confidence 566788873 22 222 2467899999999999999988864 2222333222 4569888643 22 2267
Q ss_pred HHHHHHHhccccCcEEE
Q 016157 200 KAIEELVRVVKKGSLVL 216 (394)
Q Consensus 200 ~~L~ei~r~LkpGG~ll 216 (394)
.+++++...|+++-.++
T Consensus 72 ~vl~~l~~~l~~~~iv~ 88 (165)
T d2f1ka2 72 PTLEKLIPHLSPTAIVT 88 (165)
T ss_dssp HHHHHHGGGSCTTCEEE
T ss_pred hhhhhhhhhccccccee
Confidence 88999998888876553
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=80.14 E-value=0.47 Score=40.52 Aligned_cols=42 Identities=24% Similarity=0.297 Sum_probs=36.1
Q ss_pred CCCCCEEEEEcCccCcccc--cCCCcEEEEEeCCHHHHHHHHHc
Q 016157 120 LPSGSLVLDAGCGNGKYLG--LNPDCFFVGCDISPSLIKICVDR 161 (394)
Q Consensus 120 l~~g~~VLDvGCG~G~~l~--~~~~~~v~gvD~S~~~l~~a~~~ 161 (394)
-.+|..|||.=||+|..+. ..-+...+|+|+++..++.|++|
T Consensus 210 s~~gd~VlDpF~GSGTT~~aa~~~~R~~ig~El~~~y~~~a~~R 253 (256)
T d1g60a_ 210 SNPNDLVLDCFMGSGTTAIVAKKLGRNFIGCDMNAEYVNQANFV 253 (256)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred CCCCCEEEECCCCchHHHHHHHHcCCeEEEEeCCHHHHHHHHHH
Confidence 3689999999999999753 35677999999999999999876
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=80.01 E-value=0.15 Score=42.22 Aligned_cols=90 Identities=14% Similarity=0.073 Sum_probs=62.6
Q ss_pred CCEEEEEcCccCccc----ccCCCcEEEEEeCCHHHHHHHHHc---CCeEEEeecCCCCCCCCCccEEEehhhhhhcCCh
Q 016157 123 GSLVLDAGCGNGKYL----GLNPDCFFVGCDISPSLIKICVDR---GHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTE 195 (394)
Q Consensus 123 g~~VLDvGCG~G~~l----~~~~~~~v~gvD~S~~~l~~a~~~---~i~~~~~D~~~lp~~~~~fD~Vi~~~vl~hl~~~ 195 (394)
..+|+=||+|.-... ...-+..|+.+|.+...++..... .+++...+-..+.-.-...|+||....+---..
T Consensus 32 pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~aDivI~aalipG~~a- 110 (168)
T d1pjca1 32 PGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGSRVELLYSNSAEIETAVAEADLLIGAVLVPGRRA- 110 (168)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGSEEEECCHHHHHHHHHTCSEEEECCCCTTSSC-
T ss_pred CcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcHHHHHHHHHhhcccceeehhhhhhHHHhhccCcEEEEeeecCCccc-
Confidence 469999999975542 235678999999999988877655 466655554433322245799999876544433
Q ss_pred hHHHHHHHHHHhccccCcEE
Q 016157 196 SRRKKAIEELVRVVKKGSLV 215 (394)
Q Consensus 196 ~~~~~~L~ei~r~LkpGG~l 215 (394)
+.-.-+++.+.+|||..+
T Consensus 111 --P~lIt~~mv~~Mk~GSVI 128 (168)
T d1pjca1 111 --PILVPASLVEQMRTGSVI 128 (168)
T ss_dssp --CCCBCHHHHTTSCTTCEE
T ss_pred --CeeecHHHHhhcCCCcEE
Confidence 556678899999998653
|