Citrus Sinensis ID: 016176

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390----

MYDDIAMHELNPRPGVIINHPQGENLYDGVPKDYTGEHVTAQNLYAVLLGDRKAVKGGSGKVVNSKANDRIFIFYSDHGGPGVLGMPNMPYVYAMEFIDVLKKKHAAKSYKGMVIYVEACESGSIFEGVMPKDLDIYVTTASNAQESSFGTYCPGMDPSPPPEYITCLGDLYSVAWMEDSETHNLKRETISQQYQAVKERTSNFNNYNSGSHVMEYGNTSVKSEKLYLYQGFDPASTNFPPNKLQPDQMGVVNQRDADLLFMWHMYKNAAEGSEKKSEMLKQITETMRHRKHLDASIDMIGVILFGPDKGSRILNSVRARGLPLVDDWQCLKSMVRVFETHCGSLTQYGMKHMRAFANICNSGVSQALMEETSEAACSGNELRQWHPAIRGYSA

cccccccccccccccEEEEcccccccccccccccccccccHHHHHHHHHccccccccccccccccccccEEEEEEcccccccEEEccccccccHHHHHHHHHHHHHcccccEEEEEEEcccccccccccccccccEEEEEccccccccccccccccccccccccEEEccccEEEEEEEcccccccccccHHHHHHHHHHHHccccccccccccEEEccccccHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEcccccccccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHcccccccccccccccccc

cccccccccccccccEEEEcccccccccccccccccccccHHHHHHHHccccccccccccEEEEcccccEEEEEEEccccccEEEccccccccHHHHHHHHHHHHHcccccEEEEEEEEcccccHHccccccccEEEEEEcccccccccEEEcccccccccccccccccccEEHHHHHccccccccHHHHHHHHHHHHHHHcccccccccccEEEEccccccccHHHHHccccccccccccccccccccccccccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHcccccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHcccccccccccccccccc

myddiamhelnprpgviinhpqgenlydgvpkdytgehvtAQNLYAVLLGDrkavkggsgkvvnskandRIFIFysdhggpgvlgmpnmpyVYAMEFIDVLKKKHAAKSYKGMVIYVEACesgsifegvmpkdldIYVTTasnaqessfgtycpgmdpspppeyitclgdlysvawmedsethnlkrETISQQYQAVKERtsnfnnynsgshvmeygntsvkseklylyqgfdpastnfppnklqpdqmgvvnqRDADLLFMWHMYKNAAEGSEKKSEMLKQITETMRHRKHLDASIDMIGVIlfgpdkgsrILNSvrarglplvddwQCLKSMVRVFETHCGSLTQYGMKHMRAFANICNSGVSQALMEETseaacsgnelrqwhpairgysa

MYDDIAMhelnprpgviinhpQGENLYDGVPKDYTGEHVTAQNLYAVLLGDRKavkggsgkvvnskanDRIFIFYSDHGGPGVLGMPNMPYVYAMEFIDVLKKKHAAKSYKGMVIYVEACESGSIFEGVMPKDLDIYVTTASNAQESSFGTYCPGMDPSPPPEYITCLGDLYSVAWMEDSETHNLKRETISQQYQAVKERtsnfnnynsgSHVMEYGNTSVKSEKLYLYQGFDPASTNFPPNKLQPDQMGVVNQRDADLLFMWHMYKNaaegsekksEMLKQITETMRHRKHLDASIDMIGVILFGPDKGSRILNSVRARGLPLVDDWQCLKSMVRVFETHCGSLTQYGMKHMRAFANICNSGVSQALMEETSEAacsgnelrqwhpairgysa

**************GVIINHPQGENLYDGVPKDYTGEHVTAQNLYAVLLGDRKAVKGGSGKVVNSKANDRIFIFYSDHGGPGVLGMPNMPYVYAMEFIDVLKKKHAAKSYKGMVIYVEACESGSIFEGVMPKDLDIYVTTA**********************YITCLGDLYSVAWME***********************************MEYGNTSVKSEKLYLYQGFD*****************VVNQRDADLLFMWHMYKN**********************KHLDASIDMIGVILFGPDKGSRILNSVRARGLPLVDDWQCLKSMVRVFETHCGSLTQYGMKHMRAFANICNSGVSQA***************************

MYDDIAMHELNPRPGVIINHPQGENLYDGVPKDYTGEHVTAQNLYAVLLGDRK********VVNSKANDRIFIFYSDHGGPGVLGMPNMPYVYAMEFIDVLKKKHAAKSYKGMVIYVEACESGSIFEGVMPKDLDIYVTTASNAQESSFGTYCPGMDPSPPPEYITCLGDLYSVAWMEDSETHNLKRETISQQYQAVKERTSNFNNYNSGSHVMEYGNTSVKSEKLYLYQG*************************ADLLFMWHM****************QITETMRHRKHLDASIDMIGVILFGP************RGLPLVDDWQCLKSMVRVFETHCGSLTQYGMKHMRAFANICNSGVSQALMEETSEAACSGNELRQWHPA*RGY**

MYDDIAMHELNPRPGVIINHPQGENLYDGVPKDYTGEHVTAQNLYAVLLGDRKAVKGGSGKVVNSKANDRIFIFYSDHGGPGVLGMPNMPYVYAMEFIDVLKKKHAAKSYKGMVIYVEACESGSIFEGVMPKDLDIYVTTASNAQESSFGTYCPGMDPSPPPEYITCLGDLYSVAWMEDSETHNLKRETISQQYQAVKERTSNFNNYNSGSHVMEYGNTSVKSEKLYLYQGFDPASTNFPPNKL***QMGVVNQRDADLLFMWHMYKNAAEGSEKKSEMLKQITETMRHRKHLDASIDMIGVILFGPDKGSRILNSVRARGLPLVDDWQCLKSMVRVFETHCGSLTQYGMKHMRAFANICNSGVSQALMEETSEAACSGNELR***********

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		394	2.2.26 [Sep-21-2011]
P49042		497	Vacuolar-processing enzym	N/A	no	1.0	0.792	0.749	0.0
P49045		495	Vacuolar-processing enzym	yes	no	1.0	0.795	0.736	0.0
Q39044		486	Vacuolar-processing enzym	yes	no	0.994	0.806	0.735	1e-178
P49046		475	Legumain OS=Canavalia ens	N/A	no	1.0	0.829	0.726	1e-177
O24326		493	Vacuolar-processing enzym	N/A	no	1.0	0.799	0.724	1e-172
O24325		484	Vacuolar-processing enzym	N/A	no	0.994	0.809	0.599	1e-139
P49043		494	Vacuolar-processing enzym	no	no	0.992	0.791	0.602	1e-136
Q39119		494	Vacuolar-processing enzym	no	no	0.994	0.793	0.604	1e-134
P49047		478	Vacuolar-processing enzym	no	no	0.992	0.817	0.596	1e-133
P49044		493	Vacuolar-processing enzym	N/A	no	0.992	0.793	0.58	1e-131

>sp\|P49042\|VPE_RICCO Vacuolar-processing enzyme OS=Ricinus communis PE=1 SV=1	Back alignment and function desciption

 Score =  640 bits (1650), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 296/395 (74%), Positives = 342/395 (86%), Gaps = 1/395 (0%)

Query: 1   MYDDIAMHELNPRPGVIINHPQGENLYDGVPKDYTGEHVTAQNLYAVLLGDRKAVKGGSG 60
           MYDDIA +ELNPRPGVIINHPQGE++Y GVPKDYTGEHVTA+NLYAVLLGD+ AV+GGSG
Sbjct: 103 MYDDIAKNELNPRPGVIINHPQGEDVYAGVPKDYTGEHVTAKNLYAVLLGDKSAVQGGSG 162

Query: 61  KVVNSKANDRIFIFYSDHGGPGVLGMPNMPYVYAMEFIDVLKKKHAAKSYKGMVIYVEAC 120
           KVV+SK NDRIF++YSDHGGPGVLGMPN+PY+YAM+FI+VLKKKHAA  YK MVIYVEAC
Sbjct: 163 KVVDSKPNDRIFLYYSDHGGPGVLGMPNLPYLYAMDFIEVLKKKHAAGGYKKMVIYVEAC 222

Query: 121 ESGSIFEGVMPKDLDIYVTTASNAQESSFGTYCPGMDPSPPPEYITCLGDLYSVAWMEDS 180
           ESGSIFEG+MPKD+DIYVTTASNAQESS+GTYCPGM+PSPPPE+ TCLGDLYSVAWMEDS
Sbjct: 223 ESGSIFEGIMPKDVDIYVTTASNAQESSWGTYCPGMEPSPPPEFTTCLGDLYSVAWMEDS 282

Query: 181 ETHNLKRETISQQYQAVKERTSNFNNYNSGSHVMEYGNTSVKSEKLYLYQGFDPASTNFP 240
           E+HNLK+ET+ QQY +VK RTSN+N Y +GSHVM+YGN S+K++KLYL+QGFDPAS NFP
Sbjct: 283 ESHNLKKETVKQQYSSVKARTSNYNTYAAGSHVMQYGNQSIKADKLYLFQGFDPASVNFP 342

Query: 241 PNKLQPDQ-MGVVNQRDADLLFMWHMYKNAAEGSEKKSEMLKQITETMRHRKHLDASIDM 299
           PN    +  M VVNQRDA+L FMW +YK +  GSEKK E+L+QI + ++HR HLD+S+ +
Sbjct: 343 PNNAHLNAPMEVVNQRDAELHFMWQLYKRSENGSEKKKEILQQIKDAIKHRSHLDSSMQL 402

Query: 300 IGVILFGPDKGSRILNSVRARGLPLVDDWQCLKSMVRVFETHCGSLTQYGMKHMRAFANI 359
           IG +LFGP K S IL SVR  G PLVDDW CLKSMVRVFET CGSLTQYGMKHMR FANI
Sbjct: 403 IGDLLFGPKKASAILKSVREPGSPLVDDWGCLKSMVRVFETCCGSLTQYGMKHMRTFANI 462

Query: 360 CNSGVSQALMEETSEAACSGNELRQWHPAIRGYSA 394
           CN+GVS   MEE   AACSG++  QWHP  +GYSA
Sbjct: 463 CNAGVSHTSMEEACNAACSGHDAGQWHPTNQGYSA 497

Asparagine-specific endopeptidase involved in the processing of vacuolar seed protein precursors into the mature forms.
Ricinus communis (taxid: 3988)
EC: 3EC: .EC: 4EC: .EC: 2EC: 2EC: .EC: -

>sp\|P49045\|VPE_SOYBN Vacuolar-processing enzyme OS=Glycine max PE=2 SV=1	Back alignment and function description

>sp\|Q39044\|VPEB_ARATH Vacuolar-processing enzyme beta-isozyme OS=Arabidopsis thaliana GN=At1g62710 PE=2 SV=3	Back alignment and function description

>sp\|P49046\|LEGU_CANEN Legumain OS=Canavalia ensiformis PE=1 SV=1	Back alignment and function description

>sp\|O24326\|VPE2_PHAVU Vacuolar-processing enzyme OS=Phaseolus vulgaris PE=2 SV=1	Back alignment and function description

>sp\|O24325\|VPE1_PHAVU Vacuolar-processing enzyme OS=Phaseolus vulgaris PE=1 SV=1	Back alignment and function description

>sp\|P49043\|VPE_CITSI Vacuolar-processing enzyme OS=Citrus sinensis PE=2 SV=1	Back alignment and function description

>sp\|Q39119\|VPEG_ARATH Vacuolar-processing enzyme gamma-isozyme OS=Arabidopsis thaliana GN=At4g32940 PE=2 SV=2	Back alignment and function description

>sp\|P49047\|VPEA_ARATH Vacuolar-processing enzyme alpha-isozyme OS=Arabidopsis thaliana GN=At2g25940 PE=2 SV=2	Back alignment and function description

>sp\|P49044\|VPE_VICSA Vacuolar-processing enzyme OS=Vicia sativa PE=1 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		394
449459758		490	PREDICTED: vacuolar-processing enzyme-li	1.0	0.804	0.744	0.0
255537021		497	Vacuolar-processing enzyme precursor [Ri	1.0	0.792	0.749	0.0
357476961		487	Vacuolar-processing enzyme [Medicago tru	0.997	0.806	0.737	1e-179
351720847		495	vacuolar-processing enzyme precursor [Gl	1.0	0.795	0.736	1e-179
351723279		496	seed maturation protein PM40 precursor [	1.0	0.794	0.737	1e-178
9622221		489	asparaginyl endopeptidase [Sesamum indic	0.997	0.803	0.762	1e-177
15221556		486	vacuolar-processing enzyme beta-isozyme	0.994	0.806	0.735	1e-177
224074697		470	predicted protein [Populus trichocarpa]	1.0	0.838	0.734	1e-177
3452551		503	cysteine proteinase precursor [Vicia sat	1.0	0.783	0.727	1e-175
2414681		488	cysteine proteinase precursor [Vicia nar	0.992	0.801	0.723	1e-175

>gi\|449459758\|ref\|XP_004147613.1\| PREDICTED: vacuolar-processing enzyme-like [Cucumis sativus] gi\|449506164\|ref\|XP_004162670.1\| PREDICTED: vacuolar-processing enzyme-like [Cucumis sativus]	Back alignment and taxonomy information

 Score =  643 bits (1659), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 295/396 (74%), Positives = 344/396 (86%), Gaps = 2/396 (0%)

Query: 1   MYDDIAMHELNPRPGVIINHPQGENLYDGVPKDYTGEHVTAQNLYAVLLGDRKAVKGGSG 60
           MYDDIA + LNPRPG+IINHPQGE++Y GVPKDYTGEHVTAQNLYAVLLG+R AV GGSG
Sbjct: 95  MYDDIATNVLNPRPGIIINHPQGEDVYAGVPKDYTGEHVTAQNLYAVLLGNRTAVDGGSG 154

Query: 61  KVVNSKANDRIFIFYSDHGGPGVLGMPNMPYVYAMEFIDVLKKKHAAKSYKGMVIYVEAC 120
           KVV+SK NDRIF++YSDHGGPGVLGMPN+P+VYAM+FI+VLKKKHAAK YK MVIYVEAC
Sbjct: 155 KVVDSKPNDRIFVYYSDHGGPGVLGMPNLPFVYAMDFIEVLKKKHAAKGYKEMVIYVEAC 214

Query: 121 ESGSIFEGVMPKDLDIYVTTASNAQESSFGTYCPGMDPSPPPEYITCLGDLYSVAWMEDS 180
           ESGSIFEG++PKDL+IYVTTASNAQESSFGTYCPGM+P+PPPEY+TCLGDLYSVAWMEDS
Sbjct: 215 ESGSIFEGILPKDLNIYVTTASNAQESSFGTYCPGMEPAPPPEYMTCLGDLYSVAWMEDS 274

Query: 181 ETHNLKRETISQQYQAVKERTSNFNNYNSGSHVMEYGNTSVKSEKLYLYQGFDPASTNFP 240
           ETHNLKRETI QQY+ VKERTSN NN N+GSHVMEYGN+S+K+E+LYLYQGFDPAS N P
Sbjct: 275 ETHNLKRETIDQQYRTVKERTSNPNNLNTGSHVMEYGNSSIKAERLYLYQGFDPASVNLP 334

Query: 241 P--NKLQPDQMGVVNQRDADLLFMWHMYKNAAEGSEKKSEMLKQITETMRHRKHLDASID 298
           P   + +   M  +NQRDAD+ F+W MY+   +G+ +++++L++I ET+ HR HLD SI 
Sbjct: 335 PYNGRYEMKSMDAINQRDADIFFLWQMYRKFEDGTNERAQVLEEIRETVTHRTHLDGSIR 394

Query: 299 MIGVILFGPDKGSRILNSVRARGLPLVDDWQCLKSMVRVFETHCGSLTQYGMKHMRAFAN 358
           MIG +LFGP+KGS IL+ VRA GLPLVDDW+CLKSMVRV E++CGSLTQYGMKHMRA AN
Sbjct: 395 MIGFLLFGPEKGSNILDDVRASGLPLVDDWECLKSMVRVLESYCGSLTQYGMKHMRAIAN 454

Query: 359 ICNSGVSQALMEETSEAACSGNELRQWHPAIRGYSA 394
           ICN GVS+A M E S  AC+G     WHP+ RGYSA
Sbjct: 455 ICNRGVSKASMREASMVACNGGSYGLWHPSNRGYSA 490

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|255537021\|ref\|XP_002509577.1\| Vacuolar-processing enzyme precursor [Ricinus communis] gi\|1351409\|sp\|P49042.1\|VPE_RICCO RecName: Full=Vacuolar-processing enzyme; Short=VPE; Flags: Precursor gi\|471162\|dbj\|BAA04225.1\| precursor of vacuolar processing enzyme [Ricinus communis] gi\|223549476\|gb\|EEF50964.1\| Vacuolar-processing enzyme precursor [Ricinus communis]	Back alignment and taxonomy information

>gi\|357476961\|ref\|XP_003608766.1\| Vacuolar-processing enzyme [Medicago truncatula] gi\|355509821\|gb\|AES90963.1\| Vacuolar-processing enzyme [Medicago truncatula]	Back alignment and taxonomy information

>gi\|351720847\|ref\|NP_001236678.1\| vacuolar-processing enzyme precursor [Glycine max] gi\|1351410\|sp\|P49045.1\|VPE_SOYBN RecName: Full=Vacuolar-processing enzyme; Short=VPE; Flags: Precursor gi\|511938\|dbj\|BAA06030.1\| cysteine proteinase [Glycine max]	Back alignment and taxonomy information

>gi\|351723279\|ref\|NP_001238297.1\| seed maturation protein PM40 precursor [Glycine max] gi\|9622155\|gb\|AAF89646.1\|AF169019_1 seed maturation protein PM40 [Glycine max]	Back alignment and taxonomy information

>gi\|9622221\|gb\|AAF89679.1\| asparaginyl endopeptidase [Sesamum indicum]	Back alignment and taxonomy information

>gi|15221556|ref|NP_176458.1| vacuolar-processing enzyme beta-isozyme [Arabidopsis thaliana] gi|22002012|sp|Q39044.3|VPEB_ARATH RecName: Full=Vacuolar-processing enzyme beta-isozyme; AltName: Full=Beta-VPE; Flags: Precursor gi|14194097|gb|AAK56243.1|AF367254_1 At1g62710/F23N19_8 [Arabidopsis thaliana] gi|16323336|gb|AAL15381.1| At1g62710/F23N19_8 [Arabidopsis thaliana] gi|332195875|gb|AEE33996.1| vacuolar-processing enzyme beta-isozyme [Arabidopsis thaliana]

Back alignment and taxonomy information

>gi\|224074697\|ref\|XP_002304429.1\| predicted protein [Populus trichocarpa] gi\|222841861\|gb\|EEE79408.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|3452551\|emb\|CAA07639.1\| cysteine proteinase precursor [Vicia sativa]	Back alignment and taxonomy information

>gi\|2414681\|emb\|CAB16318.1\| cysteine proteinase precursor [Vicia narbonensis]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		394
TAIR\|locus:2026242		486	BETA-VPE "beta vacuolar proces	0.994	0.806	0.740	1.6e-164
TAIR\|locus:2123782		494	GAMMA-VPE "gamma vacuolar proc	0.994	0.793	0.604	5.6e-132
TAIR\|locus:2043510		478	ALPHA-VPE "alpha-vacuolar proc	0.992	0.817	0.596	1.4e-128
TAIR\|locus:2087625		466	DELTA-VPE "delta vacuolar proc	0.954	0.806	0.469	1.5e-90
ZFIN\|ZDB-GENE-021030-1		438	lgmn "legumain" [Danio rerio (	0.890	0.801	0.342	1e-52
RGD\|619832		435	Lgmn "legumain" [Rattus norveg	0.571	0.517	0.465	2.4e-51
UNIPROTKB\|Q9R0J8		435	Lgmn "Legumain" [Rattus norveg	0.571	0.517	0.465	2.4e-51
UNIPROTKB\|Q95M12		433	LGMN "Legumain" [Bos taurus (t	0.545	0.496	0.465	3.6e-50
UNIPROTKB\|E2QXF2		433	LGMN "Uncharacterized protein"	0.571	0.519	0.457	3.6e-50
UNIPROTKB\|Q86TV3		376	LGMN "Full-length cDNA clone C	0.713	0.747	0.396	3.6e-50

TAIR\|locus:2026242 BETA-VPE "beta vacuolar processing enzyme" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1601 (568.6 bits), Expect = 1.6e-164, P = 1.6e-164
 Identities = 294/397 (74%), Positives = 338/397 (85%)

Query:     1 MYDDIAMHELNPRPGVIINHPQGENLYDGVPKDYTGEHVTAQNLYAVLLGDRKAVKGGSG 60
             MYDDIA H LNPRPG +INHP G+++Y GVPKDYTG  VTA N YAVLLGD+KAVKGGSG
Sbjct:    92 MYDDIANHPLNPRPGTLINHPDGDDVYAGVPKDYTGSSVTAANFYAVLLGDQKAVKGGSG 151

Query:    61 KVVNSKANDRIFIFYSDHGGPGVLGMPNMPYVYAMEFIDVLKKKHAAKSYKGMVIYVEAC 120
             KV+ SK ND IF++Y+DHGGPGVLGMPN P++YA +FI+ LKKKHA+ +YK MVIYVEAC
Sbjct:   152 KVIASKPNDHIFVYYADHGGPGVLGMPNTPHIYAADFIETLKKKHASGTYKEMVIYVEAC 211

Query:   121 ESGSIFEGVMPKDLDIYVTTASNAQESSFGTYCPGMDPSPPPEYITCLGDLYSVAWMEDS 180
             ESGSIFEG+MPKDL+IYVTTASNAQESS+GTYCPGM+PSPP EYITCLGDLYSVAWMEDS
Sbjct:   212 ESGSIFEGIMPKDLNIYVTTASNAQESSYGTYCPGMNPSPPSEYITCLGDLYSVAWMEDS 271

Query:   181 ETHNLKRETISQQYQAVKERTSNFNNYNSGSHVMEYGNTSVKSEKLYLYQGFDPASTNFP 240
             ETHNLK+ETI QQY  VK RTSN+N Y+ GSHVMEYGN S+KSEKLYLYQGFDPA+ N P
Sbjct:   272 ETHNLKKETIKQQYHTVKMRTSNYNTYSGGSHVMEYGNNSIKSEKLYLYQGFDPATVNLP 331

Query:   241 PNKLQ-PDQMGVVNQRDADLLFMWHMYKNAAEGSEKKSEMLKQITETMRHRKHLDASIDM 299
              N+L    ++GVVNQRDADLLF+WHMY+ + +GS KK + LK++TET RHRKHLDAS+++
Sbjct:   332 LNELPVKSKIGVVNQRDADLLFLWHMYRTSEDGSRKKDDTLKELTETTRHRKHLDASVEL 391

Query:   300 IGVILFGPDKGSRILNSVRARGLPLVDDWQCLKSMVRVFETHCGSLTQYGMKHMRAFANI 359
             I  ILFGP     +LN VR  GLPLVDDW+CLKSMVRVFE HCGSLTQYGMKHMRAFAN+
Sbjct:   392 IATILFGPTMN--VLNLVREPGLPLVDDWECLKSMVRVFEEHCGSLTQYGMKHMRAFANV 449

Query:   360 CNSGVSQALMEETSEAACSG-NELRQW-HPAIRGYSA 394
             CN+GVS+ LMEE S AAC G +E R   HP+I GYSA
Sbjct:   450 CNNGVSKELMEEASTAACGGYSEARYTVHPSILGYSA 486

GO:0004197 "cysteine-type endopeptidase activity" evidence=IEA;ISS

GO:0006508 "proteolysis" evidence=IEA;ISS

GO:0006624 "vacuolar protein processing" evidence=ISS

TAIR\|locus:2123782 GAMMA-VPE "gamma vacuolar processing enzyme" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2043510 ALPHA-VPE "alpha-vacuolar processing enzyme" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2087625 DELTA-VPE "delta vacuolar processing enzyme" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-021030-1 lgmn "legumain" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

RGD\|619832 Lgmn "legumain" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

UNIPROTKB\|Q9R0J8 Lgmn "Legumain" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

UNIPROTKB\|Q95M12 LGMN "Legumain" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|E2QXF2 LGMN "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|Q86TV3 LGMN "Full-length cDNA clone CS0DB001YK19 of Neuroblastoma of Homo sapiens (human)" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P49045	VPE_SOYBN	3, ., 4, ., 2, 2, ., -	0.7367	1.0	0.7959	yes	no
P49046	LEGU_CANEN	3, ., 4, ., 2, 2, ., 3, 4	0.7265	1.0	0.8294	N/A	no
P49042	VPE_RICCO	3, ., 4, ., 2, 2, ., -	0.7493	1.0	0.7927	N/A	no
O89017	LGMN_MOUSE	3, ., 4, ., 2, 2, ., 3, 4	0.3577	0.8984	0.8137	yes	no
Q95M12	LGMN_BOVIN	3, ., 4, ., 2, 2, ., 3, 4	0.3463	0.9060	0.8244	yes	no
O24325	VPE1_PHAVU	3, ., 4, ., 2, 2, ., -	0.5994	0.9949	0.8099	N/A	no
O24326	VPE2_PHAVU	3, ., 4, ., 2, 2, ., -	0.7240	1.0	0.7991	N/A	no
Q39044	VPEB_ARATH	3, ., 4, ., 2, 2, ., -	0.7355	0.9949	0.8065	yes	no
Q99538	LGMN_HUMAN	3, ., 4, ., 2, 2, ., 3, 4	0.3523	0.9060	0.8244	yes	no
Q5R5D9	LGMN_PONAB	3, ., 4, ., 2, 2, ., 3, 4	0.3497	0.9060	0.8244	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.4.22	0.976
3rd Layer	3.4.22.34	0.991

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		394
pfam01650		258	pfam01650, Peptidase_C13, Peptidase C13 family	1e-118
COG5206		382	COG5206, GPI8, Glycosylphosphatidylinositol transa	3e-07

>gnl\|CDD\|216627 pfam01650, Peptidase_C13, Peptidase C13 family	Back alignment and domain information

 Score =  345 bits (886), Expect = e-118
 Identities = 129/232 (55%), Positives = 164/232 (70%), Gaps = 15/232 (6%)

Query: 1   MYDDIAMHELNPRPGVIINHPQGENLYDGVPKDYTGEHVTAQNLYAVLLGDRKAVKGGSG 60
           MYDDIA +  NP PG I N P G ++Y GVP DYTG  VT +N  AVLLGD+ A+KG SG
Sbjct: 42  MYDDIANNPENPFPGKIFNKPNGTDVYKGVPIDYTGNDVTPRNFLAVLLGDKSALKG-SG 100

Query: 61  KVVNSKANDRIFIFYSDHGGPGVLGMPNMPYVYAMEFIDVLKKKHAAKSYKGMVIYVEAC 120
           KV+ S  ND +FI+++DHG PGVLG P + Y+YA +  + LKK HA   YK +V YVEAC
Sbjct: 101 KVLKSGPNDNVFIYFTDHGAPGVLGFPELDYLYAKDLAEALKKMHARGKYKKLVFYVEAC 160

Query: 121 ESGSIFEGVMPKDLDIYVTTASNAQESSFGTYCPGMDPSPPPEYITCLGDLYSVAWMEDS 180
           ESGS+FEG +PKD++IY TTA+NA ESS+GTYC      P PE  TCLGDL+SV WMEDS
Sbjct: 161 ESGSMFEG-LPKDINIYATTAANADESSWGTYC------PDPEDGTCLGDLFSVNWMEDS 213

Query: 181 ETHNLKRETISQQYQAVKERTSNFNNYNSGSHVMEYGNTSVKSEKLYLYQGF 232
           + H+L +ET+ QQ++ VK RT       +GSHVM+YG+ S+    + L+QG 
Sbjct: 214 DDHDLSKETLEQQFELVKNRT-------TGSHVMQYGDKSIPQLPVSLFQGT 258

Members of this family are asparaginyl peptidases. The blood fluke parasite Schistosoma mansoni has at least five Clan CA cysteine peptidases in its digestive tract including cathepsins B (2 isoforms), C, F and L. All have been recombinantly expressed as active enzymes, albeit in various stages of activation. In addition, a Clan CD peptidase, termed asparaginyl endopeptidase or 'legumain' has been identified. This has formerly been characterized as a 'haemoglobinase', but this term is probably incorrect. Two cDNAs have been described for Schistosoma mansoni legumain; one encodes an active enzyme whereas the active site cysteine residue encoded by the second cDNA is substituted by an asparagine residue. Both forms have been recombinantly expressed. Length = 258

>gnl\|CDD\|227531 COG5206, GPI8, Glycosylphosphatidylinositol transamidase (GPIT), subunit GPI8 [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		394
KOG1348		477	consensus Asparaginyl peptidases [Posttranslationa	100.0
PF01650		256	Peptidase_C13: Peptidase C13 family; InterPro: IPR	100.0
KOG1349		309	consensus Gpi-anchor transamidase [Posttranslation	100.0
COG5206		382	GPI8 Glycosylphosphatidylinositol transamidase (GP	100.0
PF00656		248	Peptidase_C14: Caspase domain; InterPro: IPR011600	98.44
smart00115		241	CASc Caspase, interleukin-1 beta converting enzyme	96.64
cd00032		243	CASc Caspase, interleukin-1 beta converting enzyme	95.98
KOG1546		362	consensus Metacaspase involved in regulation of ap	95.54
PF14538		154	Raptor_N: Raptor N-terminal CASPase like domain	90.06
PF12770		287	CHAT: CHAT domain	82.78

>KOG1348 consensus Asparaginyl peptidases [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

Probab=100.00  E-value=9.8e-131  Score=957.70  Aligned_cols=390  Identities=59%  Similarity=1.041  Sum_probs=376.8

Q ss_pred             CCcccCCCCCCCCCCeEeeCCCCCCccCCcCccCCCCCCCHHHHHHHHcCCCCCccCCCCceecCCCCCeEEEEeecCCC
Q 016176            1 MYDDIAMHELNPRPGVIINHPQGENLYDGVPKDYTGEHVTAQNLYAVLLGDRKAVKGGSGKVVNSKANDRIFIFYSDHGG   80 (394)
Q Consensus         1 myDDia~n~~Np~pG~i~n~~~g~nvY~gv~iDY~g~~Vt~~nfl~vL~G~~~~~~~~s~kvl~s~~~D~VfiY~tdHG~   80 (394)
                      ||||||+||+||+||+|||+|+|+|||+||++||+|++|||+||++||.|++++++|||||||+|+|||||||||+||||
T Consensus        87 MYDDIA~~~~NPrpG~iiN~P~G~DvY~GvpkDYtg~~Vt~~Nf~aVllGd~savkGGsGKV~~SgpnDhiFiYytDHG~  166 (477)
T KOG1348|consen   87 MYDDIANNEENPRPGVIINRPNGKDVYQGVPKDYTGEDVTPQNFLAVLLGDASAVKGGSGKVLKSGPNDHIFIYYTDHGG  166 (477)
T ss_pred             EehhhhcCCCCCCCceeecCCCchhhhcCCCCcccCCcCCHHHHHHHHhcccccccCCCceeeccCCCceEEEEEecCCC
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCccCCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEecccccccccccCCCCCCEEEEeccCCCCccccccCCCCCCCC
Q 016176           81 PGVLGMPNMPYVYAMEFIDVLKKKHAAKSYKGMVIYVEACESGSIFEGVMPKDLDIYVTTASNAQESSFGTYCPGMDPSP  160 (394)
Q Consensus        81 ~g~l~fp~~~~l~~~dl~~~l~~M~~~~~y~~~v~~ieaC~SgSm~~~~l~~~~nv~~~tas~~~EsSy~~~~~~~~~~~  160 (394)
                      ||.|.||+++.|+++||+++|++||+.++|++||||+||||||||||++||+++||||+||||+.||||++|||+++|+|
T Consensus       167 pGvl~mP~~~~l~akdlnevL~kmhk~k~Y~~mvfYlEACESGSmfegiLp~~lnIYatTAaNa~ESSwgtycp~~~psp  246 (477)
T KOG1348|consen  167 PGVLGMPTSPDLYAKDLNEVLKKMHKSKTYKKMVFYLEACESGSMFEGILPKNLNIYATTAANARESSWGTYCPGEYPSP  246 (477)
T ss_pred             CceEecCCCcchhHHHHHHHHHHHHhccchheEEEEeeeccCcchhhhhccCCCcEEEeecCCccccccceeCCCCCCCC
Confidence            99999999888999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcccchhhhhhhhhhcccccCCCccccHHHHHHHHHhhhccCCCCCCCCccccccCCcccccccccccccCCCCCCCC
Q 016176          161 PPEYITCLGDLYSVAWMEDSETHNLKRETISQQYQAVKERTSNFNNYNSGSHVMEYGNTSVKSEKLYLYQGFDPASTNFP  240 (394)
Q Consensus       161 ~~~~~t~lgD~fs~~wme~~~~~~~~~~tl~~~~~~v~~~t~~~~~~~~~Shv~~yGd~~~~~~~l~~f~g~~~~~~~~~  240 (394)
                      ++++.|||||+||++||||||.+|+++|||.+||+.||++|+.+  |..|||||||||..|++++|..|||.+|++++++
T Consensus       247 pse~~tcLGDlySV~WmeDSd~hdL~kETL~qQYhlVK~rt~~s--~s~gsHVmqyGd~~iske~l~lfqG~~pa~~nf~  324 (477)
T KOG1348|consen  247 PSEYSTCLGDLYSVNWMEDSDVHDLKKETLHQQYHLVKKRTNTS--YSYGSHVMQYGDKTISKEKLMLFQGMKPANENFT  324 (477)
T ss_pred             hhhcccccccceeeeeeccCccccchHHHHHHHHHHHHHhcCCC--CCCcceeeecCcchhhHHHHHHHcCCCcccCCCC
Confidence            99999999999999999999999999999999999999999876  6679999999999999999999999999998875


Q ss_pred             C-CCCCCCCCCcccccchhHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccccccccc
Q 016176          241 P-NKLQPDQMGVVNQRDADLLFMWHMYKNAAEGSEKKSEMLKQITETMRHRKHLDASIDMIGVILFGPDKGSRILNSVRA  319 (394)
Q Consensus       241 ~-~~~~~~~~~~v~~rd~~L~~l~~~~~~a~~~~~~k~~a~~eL~~~l~~R~~id~~v~~I~~~l~~~~~~~~~l~~~~~  319 (394)
                      - ..+..+++..|||||+||++||+|++++++++.++.++++++.+++.||++||+++..|+.++|+. +...+|+.+|+
T Consensus       325 l~~~s~~~~s~~~n~rD~~L~~l~~k~rka~dgs~~s~e~~k~i~~~~~hR~~id~sV~~I~~llf~~-~~~~~l~~vr~  403 (477)
T KOG1348|consen  325 LPASSHKSPSGLTNQRDAPLLHLWRKYRKANDGSAESRELQKEILRHKDHRKHIDKSVRLIVSLLFGS-EGEAVLNQVRS  403 (477)
T ss_pred             CCccCcCCccccCCCCCccHHHHHHHHhcCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc-chHHHHHHhhc
Confidence            2 234445677899999999999999999999998999999999999999999999999999999987 45568889999


Q ss_pred             CCCCCcCcchhHHHHHHHHhhhcCCCchhhhhHHHHHHHHHhcCCCHHHHHHHHHhhcCCCCCCCccccccCCC
Q 016176          320 RGLPLVDDWQCLKSMVRVFETHCGSLTQYGMKHMRAFANICNSGVSQALMEETSEAACSGNELRQWHPAIRGYS  393 (394)
Q Consensus       320 ~g~plv~d~dCyk~~V~~Fe~~Cg~l~eY~lkylrvLaNLCe~G~~~~~i~~Ai~~~C~~~~~~~~~~~~~~~~  393 (394)
                      .|+|+++||+|+|.+|++|+++||+++||||||||+|+|||+.|++.++|.+|+.++|...+..+|+++.+|||
T Consensus       404 ~g~Plvddw~C~k~~v~~F~~hCg~~~~YglKh~~~~aN~Cn~g~~~e~~~~A~~~aC~~~~~~~~~~~~~gfs  477 (477)
T KOG1348|consen  404 EGQPLVDDWDCLKSAVRHFETHCGSTYEYGLKHMRVLANMCNKGVPLEQIELAMDQACLGIYTEPWSSLRRGFS  477 (477)
T ss_pred             CCCCccchHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCccHHHHHHHHHhHhcCCccccchhhcccCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999997

>PF01650 Peptidase_C13: Peptidase C13 family; InterPro: IPR001096 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families	Back alignment and domain information

>KOG1349 consensus Gpi-anchor transamidase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>COG5206 GPI8 Glycosylphosphatidylinositol transamidase (GPIT), subunit GPI8 [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF00656 Peptidase_C14: Caspase domain; InterPro: IPR011600 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families	Back alignment and domain information

>smart00115 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues	Back alignment and domain information

>cd00032 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues; Cysteine-dependent aspartate-directed proteases that mediate programmed cell death (apoptosis)	Back alignment and domain information

>KOG1546 consensus Metacaspase involved in regulation of apoptosis [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF14538 Raptor_N: Raptor N-terminal CASPase like domain	Back alignment and domain information

>PF12770 CHAT: CHAT domain	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		394
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 46.8 bits (110), Expect = 1e-05
 Identities = 76/516 (14%), Positives = 138/516 (26%), Gaps = 155/516 (30%)

Query: 1   MYDDIAMHELNPRPGVIINHPQGENLYDGVPKDYTGEHVTAQNLYAVLLGDRKAVK---- 56
           +   I   +  P     +   Q + LY+     +   +V+    Y  L   R+A+     
Sbjct: 94  LMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQV-FAKYNVSRLQPYLKL---RQALLELRP 149

Query: 57  ---------GGSGK------VVNSKANDRIF---IFYSDHG------------------- 79
                     GSGK      V  S          IF+ +                     
Sbjct: 150 AKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQI 209

Query: 80  ----GPGVLGMPNMPYVYAMEFIDVLKKKHAAKSYKGMVIYVEACESGSIFEGVMPKDLD 135
                       N+           L++   +K Y+  ++ +   ++   +      +L 
Sbjct: 210 DPNWTSRSDHSSNIKLRIH-SIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF---NLS 265

Query: 136 --IYVTT--ASNAQESSFGTYC-PGMDPSP----PPEYITCLGDLYSVAWMEDSETHNLK 186
             I +TT         S  T     +D       P E       L         +   L 
Sbjct: 266 CKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDE---VKSLLLKYLDCRPQD---LP 319

Query: 187 RET----------ISQQYQAVKERTSNFNNYNSG--SHVMEYGNTSVKSEKLYLYQG-FD 233
           RE           I++  +       N+ + N    + ++E   +S+   +   Y+  FD
Sbjct: 320 REVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIE---SSLNVLEPAEYRKMFD 376

Query: 234 -----PASTNFPPNKLQ--------PDQMGVVNQ-RDADLLFMW---------HMYKNAA 270
                P S + P   L          D M VVN+     L+             +Y    
Sbjct: 377 RLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELK 436

Query: 271 EGSEKKSEMLKQITETMRHRKHLDAS------IDM-----IGVILFGPDKGSR------- 312
              E +  + + I +     K  D+       +D      IG  L   +   R       
Sbjct: 437 VKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMV 496

Query: 313 ------ILNSVRARGLP------LVDDWQCLKSMVRVFETHCGSLTQY--GMKH--MRAF 356
                 +   +R           +++  Q LK        +     +    +     +  
Sbjct: 497 FLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIE 556

Query: 357 ANICNSG----VSQALMEETS----EAACSGNELRQ 384
            N+  S     +  ALM E      EA       +Q
Sbjct: 557 ENLICSKYTDLLRIALMAEDEAIFEEAH------KQ 586

PyMOL of 1vt4

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		394
3bij_A		285	Uncharacterized protein GSU0716; alpha-beta protei	98.98
4f6o_A		350	Metacaspase-1; rossmann fold, hydrolase; HET: DFH;	98.4
4af8_A		367	Metacaspase MCA2; hydrolase, cysteine peptidase, c	98.39
3uoa_B		390	Mucosa-associated lymphoid tissue lymphoma transl	98.2
1m72_A		272	Caspase-1; caspase, cysteine protease, hydrolase-h	95.37
3h11_B		271	Caspase-8; cell death, apoptosis, caspase, alterna	95.25
1f1j_A		305	Caspase-7 protease; caspase-7, cysteine protease,	94.7
2j32_A		250	Caspase-3; Pro-caspase3, thiol protease, hydrolase	94.65
3sir_A		259	Caspase; hydrolase; 2.68A {Drosophila melanogaster	94.49
2nn3_C		310	Caspase-1; cysteine protease, hydrolase; 3.00A {Sp	94.29
4ehd_A		277	Caspase-3; caspase, apoptosis, allosteric inhibiti	94.18
3od5_A		278	Caspase-6; caspase domain, apoptotic protease, hyd	94.01
1nw9_B		277	Caspase 9, apoptosis-related cysteine protease; XI	93.46
2fp3_A		316	Caspase NC; apoptosis, initiator caspase activatio	93.17
3e4c_A		302	Caspase-1; zymogen, inflammasome, ICE, IL-1B, inna	91.94
2h54_A		178	Caspase-1; allosteric site, dimer interface, hydro	88.35
3h11_A		272	CAsp8 and FADD-like apoptosis regulator; cell deat	80.92

>3bij_A Uncharacterized protein GSU0716; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.50A {Geobacter sulfurreducens pca}	Back alignment and structure

Probab=98.98  E-value=6.1e-10  Score=107.72  Aligned_cols=146  Identities=14%  Similarity=0.170  Sum_probs=104.1

Q ss_pred             CCCCHHHHHHHHcCCCCCccCCCCceecCCCCCeEEEEeecCCCC-------------CccCCCCCCCCCHHHHHHHHHH
Q 016176           37 EHVTAQNLYAVLLGDRKAVKGGSGKVVNSKANDRIFIFYSDHGGP-------------GVLGMPNMPYVYAMEFIDVLKK  103 (394)
Q Consensus        37 ~~Vt~~nfl~vL~G~~~~~~~~s~kvl~s~~~D~VfiY~tdHG~~-------------g~l~fp~~~~l~~~dl~~~l~~  103 (394)
                      .+.|.+++++.|..-.          -...++|.+||||+|||..             ++|...|+. |..++|.+.|+.
T Consensus        53 ~~~t~~~i~~al~~l~----------~~~~~~D~~~~yfSGHG~~~~~~~g~e~dg~~~~l~p~D~~-i~~~~l~~~l~~  121 (285)
T 3bij_A           53 KAATRAKVIDAIGKAA----------KALGKGDIFMLSYSGHGGQVPDTSNDEPDGVDETWCLFDGE-LIDDELYALLGK  121 (285)
T ss_dssp             GGCCHHHHHHHHHHHH----------HHCCTTCEEEEEEESCEEEEECTTSCCTTCEEEEEECSSSE-EEHHHHHHHHTT
T ss_pred             CccCHHHHHHHHHHHH----------HhCCCCCEEEEEEcCCcccccCCCCCccCCCcceEEecCCC-ccHHHHHHHHHh
Confidence            4578899988886211          1346789999999999962             355555654 778899988876


Q ss_pred             HHHhcCCCcEEEEEecccccccccc----------------------cCC-----------------------------C
Q 016176          104 KHAAKSYKGMVIYVEACESGSIFEG----------------------VMP-----------------------------K  132 (394)
Q Consensus       104 M~~~~~y~~~v~~ieaC~SgSm~~~----------------------~l~-----------------------------~  132 (394)
                      |.   .-+++++++|+|+||++.++                      .+|                             .
T Consensus       122 l~---~~~~~~vilD~C~SG~~~~~~p~~~~~~~~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  198 (285)
T 3bij_A          122 FA---AGVRVLVFSDSCHSGTVVKMAYYNGTTAARSAGPDEGEIRYRAMPQSVAMRTYRANREFYDTIQQKTKKVDLADV  198 (285)
T ss_dssp             SC---SSCEEEEEEECCCCCCHHHHHHTTC-------------CEESBCCHHHHHHHHHHTHHHHHHHHHHCCCCCTTTC
T ss_pred             cc---CCCeEEEEEecCCCCccccccccccccccccccccccccceeecCchhhhhhhhcchhHHHHHhhhcccccccCC
Confidence            62   35789999999999998762                      011                             1


Q ss_pred             CCCEEEEeccCCCCccccccCCCCCCCCCCCcccchhhhhhhhhhcccccCCCccccHHHHHHHHHhhhccCCCCCCCCc
Q 016176          133 DLDIYVTTASNAQESSFGTYCPGMDPSPPPEYITCLGDLYSVAWMEDSETHNLKRETISQQYQAVKERTSNFNNYNSGSH  212 (394)
Q Consensus       133 ~~nv~~~tas~~~EsSy~~~~~~~~~~~~~~~~t~lgD~fs~~wme~~~~~~~~~~tl~~~~~~v~~~t~~~~~~~~~Sh  212 (394)
                      ..++++++|+.++|.||-.-          .-     -.||.+.++-.... -...|+.++++.|++.+..      .+|
T Consensus       199 ~~~~i~lsa~~~~q~A~e~~----------~~-----G~FT~aLl~~L~~~-~~~~s~~~l~~~v~~~~~~------~Q~  256 (285)
T 3bij_A          199 KASILLISGCQDNQLSQDGA----------FN-----GAFTGQLLRVWKNG-LYKGSYRSFHKAIVRRMPP------DQT  256 (285)
T ss_dssp             SSEEEEEESSCTTSCCEECS----------SS-----CHHHHHHHHHHGGG-TCCSCHHHHHHHHHHHSCT------TCC
T ss_pred             CCCEEEEEeCCCCccccccc----------cC-----CHHHHHHHHHHhhC-CCCcCHHHHHHHHHHhcCC------CCC
Confidence            24689999999999998531          11     36888877643322 2357999999999988752      478


Q ss_pred             cccccC
Q 016176          213 VMEYGN  218 (394)
Q Consensus       213 v~~yGd  218 (394)
                      ++.||.
T Consensus       257 P~~~~~  262 (285)
T 3bij_A          257 PNFFTA  262 (285)
T ss_dssp             CEEEEE
T ss_pred             cceeCC
Confidence            888875

PyMOL of 3bij

>4f6o_A Metacaspase-1; rossmann fold, hydrolase; HET: DFH; 1.68A {Saccharomyces cerevisiae}	Back alignment and structure

>4af8_A Metacaspase MCA2; hydrolase, cysteine peptidase, caspase/hemoglobin fold; 1.40A {Trypanosoma brucei} PDB: 4afp_A 4afv_A 4afr_A	Back alignment and structure

>3uoa_B Mucosa-associated lymphoid tissue lymphoma transl protein 1; paracaspase, lymphoma, NF-KB signalling, caspase fold, immun fold, hydrolase-hydrolase inhibitor complex; 1.75A {Homo sapiens} PDB: 3uo8_B 3v55_A 3v4l_A* 3v4o_A*	Back alignment and structure

>1m72_A Caspase-1; caspase, cysteine protease, hydrolase-hydrolase inhibitor CO; 2.30A {Spodoptera frugiperda} SCOP: c.17.1.1 PDB: 3sip_B	Back alignment and structure

>3h11_B Caspase-8; cell death, apoptosis, caspase, alternative splicing, HOST- virus interaction, polymorphism, cytoplasm, disease mutation; 1.90A {Homo sapiens} SCOP: c.17.1.1 PDB: 2k7z_A 1i4e_B 2fun_B 2c2z_B*	Back alignment and structure

>1f1j_A Caspase-7 protease; caspase-7, cysteine protease, hydrolase, apoptosis, hydrolas hydrolase inhibitor complex; 2.35A {Homo sapiens} SCOP: c.17.1.1 PDB: 1kmc_A 3r5k_A 1i4o_A 1gqf_A 3h1p_A 1shj_A* 1k86_A 1k88_A 1shl_A*	Back alignment and structure

>2j32_A Caspase-3; Pro-caspase3, thiol protease, hydrolase, hydrolase-hydrolase inhibitor complex; 1.30A {Homo sapiens} PDB: 2j30_A 3h0e_A* 2j33_A 3pd1_A 2j31_A 3pcx_A 1nms_A* 1nmq_A* 3deh_A* 3dei_A* 3dej_A* 3dek_A* 3pd0_A 3itn_A 1qx3_A	Back alignment and structure

>3sir_A Caspase; hydrolase; 2.68A {Drosophila melanogaster} PDB: 3sip_A	Back alignment and structure

>2nn3_C Caspase-1; cysteine protease, hydrolase; 3.00A {Spodoptera frugiperda}	Back alignment and structure

>4ehd_A Caspase-3; caspase, apoptosis, allosteric inhibition; 1.58A {Homo sapiens} PDB: 4ehk_A 4ehf_A 4ehn_A 1cp3_A 4ehh_A 4eha_A 4ehl_A 1i3o_A	Back alignment and structure

>3od5_A Caspase-6; caspase domain, apoptotic protease, hydrolase-hydrolase INHI complex; 1.60A {Homo sapiens} SCOP: c.17.1.0 PDB: 3k7e_A 3s70_A 3v6m_A 3v6l_A 3nr2_A 4fxo_A 2wdp_A 3nkf_A 3s8e_A 4ejf_A 3qnw_A* 3p4u_A* 3p45_B 3qnw_B* 3p4u_B*	Back alignment and structure

>1nw9_B Caspase 9, apoptosis-related cysteine protease; XIAP, caspase inhibition, caspase activation, dimerization; 2.40A {Homo sapiens} SCOP: c.17.1.1 PDB: 1jxq_A* 2ar9_A	Back alignment and structure

>2fp3_A Caspase NC; apoptosis, initiator caspase activation, dimerization, active site conformation, hydrolysis/apoptosis complex; 2.50A {Drosophila melanogaster}	Back alignment and structure

>3e4c_A Caspase-1; zymogen, inflammasome, ICE, IL-1B, innate immunity, apoptosis, hydrolase, protease protease; 2.05A {Homo sapiens}	Back alignment and structure

>2h54_A Caspase-1; allosteric site, dimer interface, hydrolase; HET: PHQ; 1.80A {Homo sapiens} PDB: 1rwm_A* 1rwk_A* 1rwo_A* 1rwp_A* 1rwv_A* 1rww_A* 1rwn_A* 2h48_A* 2h4w_A* 1rwx_A* 2hbq_A* 2hby_A* 1ibc_A 3d6m_A* 2h4y_A* 2h51_A* 3d6f_A* 3d6h_A* 2hbz_A* 2hbr_A* ...	Back alignment and structure

>3h11_A CAsp8 and FADD-like apoptosis regulator; cell death, apoptosis, caspase, alternative splicing, HOST- virus interaction, polymorphism, cytoplasm, disease mutation; 1.90A {Homo sapiens} PDB: 3h13_A	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		394
g1qtn.1		242	Caspase-8 {Human (Homo sapiens) [TaxId: 9606]}	97.67
d1nw9b_		277	Caspase-9 {Human (Homo sapiens) [TaxId: 9606]}	97.28
g1pyo.1		257	Caspase-2 {Human (Homo sapiens) [TaxId: 9606]}	96.9
g1sc3.1		261	Interleukin-1beta converting enzyme (a cysteine pr	96.79
d1m72a_		256	Caspase-1 {Fall armyworm (Spodoptera frugiperda) [	96.52
g1nme.1		238	Apopain (caspase-3, cpp32) {Human (Homo sapiens) [	96.34
d1f1ja_		245	Caspase-7 {Human (Homo sapiens) [TaxId: 9606]}	95.6

>d1nw9b_ c.17.1.1 (B:) Caspase-9 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Caspase-like
superfamily: Caspase-like
family: Caspase catalytic domain
domain: Caspase-9
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.28  E-value=0.00017  Score=65.70  Aligned_cols=123  Identities=17%  Similarity=0.176  Sum_probs=68.3

Q ss_pred             CCCCeEEEEeecCCCCC-ccC------CCCCCCCCHHHHHHHHHHHH-HhcCCCcEEEEEecccccccccc---------
Q 016176           66 KANDRIFIFYSDHGGPG-VLG------MPNMPYVYAMEFIDVLKKKH-AAKSYKGMVIYVEACESGSIFEG---------  128 (394)
Q Consensus        66 ~~~D~VfiY~tdHG~~g-~l~------fp~~~~l~~~dl~~~l~~M~-~~~~y~~~v~~ieaC~SgSm~~~---------  128 (394)
                      .+.|.++|||+|||... .+.      -+|+..+.-.++...+.... ..-+=|..+|+++||+++.+-.+         
T Consensus        86 ~~~d~~v~~~~gHG~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~kpki~~idaCr~~~~~~~~~~~~~~~~  165 (277)
T d1nw9b_          86 GALDCCVVVILSHGCQASHLQFPGAVYGTDGCPVSVEKIVNIFNGTSCPSLGGKPKLFFIQACGGEQKDHGFEVASTSPE  165 (277)
T ss_dssp             TTCSEEEEEEEEEEECCCCSSSCCEEECTTSCEEEHHHHHHTTCTTTCGGGTTSCEEEEEEEEC----------------
T ss_pred             cCCCEEEEEEeCCCcccccccccCcccCCccccccHHHHHHHhHHhhhhhcccCcEEEEEecccCCcccccccccccCcc
Confidence            56799999999999652 222      23444455556555443211 12333556899999999865332         


Q ss_pred             -----------------------------cCCCCCCEEEEeccCCCCccccccCCCCCCCCCCCcccchhhhhhhhhhcc
Q 016176          129 -----------------------------VMPKDLDIYVTTASNAQESSFGTYCPGMDPSPPPEYITCLGDLYSVAWMED  179 (394)
Q Consensus       129 -----------------------------~l~~~~nv~~~tas~~~EsSy~~~~~~~~~~~~~~~~t~lgD~fs~~wme~  179 (394)
                                                   .+|...++++.-|+.++..||-.          +..+.    +|....++-
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~~i~~st~~g~~a~~~----------~~~gS----~f~~~L~~~  231 (277)
T d1nw9b_         166 DESPGSNPEPDATPFQEGLRTFDQLDAISSLPTPSDIFVSYSTFPGFVSWRD----------PKSGS----WYVETLDDI  231 (277)
T ss_dssp             -----------CBCCC------------CCCCCSCSEEEEEECCCCBSSTTC----------TTSCB----HHHHHHHHH
T ss_pred             cccccccccccccchhcccccccccccccccCCcccceEEEecccceEEecC----------CCCCC----HHHHHHHHH
Confidence                                         13444567777777777666532          12232    344443332


Q ss_pred             cccCCCccccHHHHHHHHHhhhcc
Q 016176          180 SETHNLKRETISQQYQAVKERTSN  203 (394)
Q Consensus       180 ~~~~~~~~~tl~~~~~~v~~~t~~  203 (394)
                      ... .....+|.+++..|.+++..
T Consensus       232 l~~-~~~~~~l~~il~~V~~~V~~  254 (277)
T d1nw9b_         232 FEQ-WAHSEDLQSLLLRVANAVSV  254 (277)
T ss_dssp             HHH-HTTTSCHHHHHHHHHHHHHT
T ss_pred             HHH-hCCCCCHHHHHHHHHHHHHH
Confidence            211 12456799999999998854

PyMOL of d1nw9b_

>d1m72a_ c.17.1.1 (A:) Caspase-1 {Fall armyworm (Spodoptera frugiperda) [TaxId: 7108]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Caspase-like
superfamily: Caspase-like
family: Caspase catalytic domain
domain: Caspase-1
species: Fall armyworm (Spodoptera frugiperda) [TaxId: 7108]

Probab=96.52  E-value=0.001  Score=60.35  Aligned_cols=141  Identities=11%  Similarity=0.140  Sum_probs=82.1

Q ss_pred             CCCCHHHHHHHHcCCCCCccCCCCceecCCCCCeEEEEeecCCCCCccCCCCCCCCCHHHHHHHHHHHHHhc-CCCcEEE
Q 016176           37 EHVTAQNLYAVLLGDRKAVKGGSGKVVNSKANDRIFIFYSDHGGPGVLGMPNMPYVYAMEFIDVLKKKHAAK-SYKGMVI  115 (394)
Q Consensus        37 ~~Vt~~nfl~vL~G~~~~~~~~s~kvl~s~~~D~VfiY~tdHG~~g~l~fp~~~~l~~~dl~~~l~~M~~~~-~y~~~v~  115 (394)
                      .++|.+.+.++|.--.       .+ . -++.|-++|||.+||+.|+|.=-|.. +..+++...+....... +-|--+|
T Consensus        65 ~nlt~~~m~~~l~~~~-------~~-~-~~~~d~~vv~~~~HG~~~~i~~~D~~-~~~~~~~~~~~~~~~~~L~~KPKif  134 (256)
T d1m72a_          65 PNLKSEEINKFIQQTA-------EM-D-HSDADCLLVAVLTHGELGMLYAKDTH-YKPDNLWYYFTADKCPTLAGKPKLF  134 (256)
T ss_dssp             ESCCHHHHHHHHHHHH-------TS-C-CTTEEEEEEEEESCEETTEEECSSSE-ECTTHHHHTTSTTTCGGGTTSCEEE
T ss_pred             eCCCHHHHHHHHHHHh-------hh-h-ccCCCeEEEEEeccCcCCEEEecCCc-ccchHHhhhhhhhhhHHHcCCcEEE
Confidence            3567777777665111       11 1 13457899999999999977555553 55566655443211111 1122489


Q ss_pred             EEecccccccccc----------------cCCCCCCEEEEeccCCCCccccccCCCCCCCCCCCcccchhhhhhhhhhcc
Q 016176          116 YVEACESGSIFEG----------------VMPKDLDIYVTTASNAQESSFGTYCPGMDPSPPPEYITCLGDLYSVAWMED  179 (394)
Q Consensus       116 ~ieaC~SgSm~~~----------------~l~~~~nv~~~tas~~~EsSy~~~~~~~~~~~~~~~~t~lgD~fs~~wme~  179 (394)
                      +++||...-+-.+                .+|...++++.-|+.++.-||..-          ..|+    +|.-.+++-
T Consensus       135 ~lqACRg~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~lia~st~~g~~a~~~~----------~~gS----~fi~~L~~~  200 (256)
T d1m72a_         135 FIQACQGDRLDGGITLSRTETDGSPSTSYRIPVHADFLIAFSTVPGYFSWRNT----------TRGS----WFMQALCEE  200 (256)
T ss_dssp             EEESCSSSBCBCCEEEEC---------CEEECTTCSEEEEESSCTTBCCEEET----------TTEE----HHHHHHHHH
T ss_pred             EEecCcCCcccCCccccccccccccccccccCCCCCeeEEEecccceeeccCC----------CCCC----HHHHHHHHH
Confidence            9999997543221                134445788888888777776531          2232    344444432


Q ss_pred             cccCCCccccHHHHHHHHHhhhc
Q 016176          180 SETHNLKRETISQQYQAVKERTS  202 (394)
Q Consensus       180 ~~~~~~~~~tl~~~~~~v~~~t~  202 (394)
                      .. +...++.|.+++..|.+++.
T Consensus       201 l~-~~~~~~~l~~il~~V~~~V~  222 (256)
T d1m72a_         201 LR-YAGTERDILTLLTFVCQKVA  222 (256)
T ss_dssp             HH-HHTTTSCHHHHHHHHHHHHH
T ss_pred             HH-HhCCCCCHHHHHHHHHHHHH
Confidence            21 12345779999999998885

PyMOL of d1m72a_

>d1f1ja_ c.17.1.1 (A:) Caspase-7 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Caspase-like
superfamily: Caspase-like
family: Caspase catalytic domain
domain: Caspase-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.60  E-value=0.0079  Score=53.72  Aligned_cols=141  Identities=13%  Similarity=0.167  Sum_probs=79.8

Q ss_pred             CCCCHHHHHHHHcCCCCCccCCCCceecCCCCCeEEEEeecCCCCCccCCCCCCCCCHHHHHHHHHHHHHhc-CCCcEEE
Q 016176           37 EHVTAQNLYAVLLGDRKAVKGGSGKVVNSKANDRIFIFYSDHGGPGVLGMPNMPYVYAMEFIDVLKKKHAAK-SYKGMVI  115 (394)
Q Consensus        37 ~~Vt~~nfl~vL~G~~~~~~~~s~kvl~s~~~D~VfiY~tdHG~~g~l~fp~~~~l~~~dl~~~l~~M~~~~-~y~~~v~  115 (394)
                      .+.|.+.+.+.|.--.       .+ . -...|.++|||.+||..+.|.=.|+ .+..+++...+..-.-.. +-|--+|
T Consensus        55 ~nl~~~em~~~l~~~~-------~~-~-~~~~~~~vv~~~~HG~~~~i~g~d~-~~~v~~~~~~~~~~~~~~L~~kpKif  124 (245)
T d1f1ja_          55 NDCSCAKMQDLLKKAS-------EE-D-HTNAACFACILLSHGEENVIYGKDG-VTPIKDLTAHFRGDRSKTLLEKPKLF  124 (245)
T ss_dssp             ESCCHHHHHHHHHHHH-------HS-C-GGGEEEEEEEEESCEETTEEECSSS-EEEHHHHHHTTSTTTCGGGTTSCEEE
T ss_pred             cCCCHHHHHHHHHHHH-------HH-h-ccCCceEEEEEeeccccceEecCCC-cEEcchhhhhccchhhHHHhhcchhh
Confidence            3566666666666211       01 1 1235788999999999986655455 366666665554311111 1122478


Q ss_pred             EEeccccccccccc-----------------CCCCCCEEEEeccCCCCccccccCCCCCCCCCCCcccchhhhhhhhhhc
Q 016176          116 YVEACESGSIFEGV-----------------MPKDLDIYVTTASNAQESSFGTYCPGMDPSPPPEYITCLGDLYSVAWME  178 (394)
Q Consensus       116 ~ieaC~SgSm~~~~-----------------l~~~~nv~~~tas~~~EsSy~~~~~~~~~~~~~~~~t~lgD~fs~~wme  178 (394)
                      +++||.++.+-.++                 +|...++++.-|+.++..||-.          +.-|    -+|.-.+++
T Consensus       125 ~iqaCrg~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~li~~st~~g~~a~~~----------~~~g----S~fi~~L~~  190 (245)
T d1f1ja_         125 FIQACRGTELDDGIQADSGPINDTDANPRYKIPVEADFLFAYSTVPGYYSWRS----------PGRG----SWFVQALCS  190 (245)
T ss_dssp             EEESCCSSBCBCCBC---------------CBCTTTTEEEEESSCTTBCCEEE----------TTTE----EHHHHHHHH
T ss_pred             ehhhhcCcccccceeecCCCCCccccccccccCCCCCeEEEEecCCCceeccC----------CCCC----CHHHHHHHH
Confidence            89999987653221                 2333456666666666555532          1122    244444443


Q ss_pred             ccccCCCccccHHHHHHHHHhhhc
Q 016176          179 DSETHNLKRETISQQYQAVKERTS  202 (394)
Q Consensus       179 ~~~~~~~~~~tl~~~~~~v~~~t~  202 (394)
                      -... ....+.|.+++..|.+++.
T Consensus       191 ~l~~-~~~~~~l~~il~~V~~~V~  213 (245)
T d1f1ja_         191 ILEE-HGKDLEIMQILTRVNDRVA  213 (245)
T ss_dssp             HHHH-HTTTSCHHHHHHHHHHHHH
T ss_pred             HHHH-hCCCCCHHHHHHHHHHHHH
Confidence            2221 2345789999999998875

PyMOL of d1f1ja_