Citrus Sinensis ID: 016190

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390---
Protein Sequence
MAYDDDPYRDEDEEPLMDYDDIRSDPEQSPEHQQHQNDNVLDDFDDDDVGDGGVSPARERSQTPVYNNNEKSSKPRKRLVKKGAKESGSTPSLIDEREDEYDDEGEDNIIGDDFEREIEERKRKKWGKEGGKDHNTKKRLKSGGDKKFSSSGGKSSGFKSSRAGSIRDNDKMLNEMWNAVAPTGDSEDDQEGVRTLDDDNFIDDSGVDPSDRYGSDSEPRFAHDAPQAEEGDEDEEIKELFKMGKKRKKNEKSPAEIALLVENVMAELEVTAEEDAELNRQGKPAINKLKKLSLLTEVLSKKQLQQEFLDHGVLTLLKNWLEPLPDGSLPNINIRAAILKILTEFPIDLEQFDRREQLKKSGLGKVIMFLSKSDEETTSNRKLAKDLVDKWVM
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccccccccccccccccccccccccccccccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHcccccccccccHHHHHHccHHHHHHHHHccccccHHHHHHHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccccccccccccccccccccccccHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccccccccccccccccccccHHHHccccccccccccccHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcHHHHHHcccHHHHHHHHHccccccccccHHHHHHHHHHHHHccccccccccHHHHHHccccEEEEEEEccccccHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
maydddpyrdedeeplmdyddirsdpeqspehqqhqndnvlddfddddvgdggvsparersqtpvynnneksskprKRLVKkgakesgstpslideredeyddegedniigdDFEREIEERKRKkwgkeggkdhntkkrlksggdkkfsssggkssgfkssragsirdnDKMLNEMWNavaptgdseddqegvrtldddnfiddsgvdpsdrygsdseprfahdapqaeegdeDEEIKELFKMGKkrkkneksPAEIALLVENVMAELEVTAEEDAELnrqgkpainkLKKLSLLTEVLSKKQLQQEFLDHGVLTLLKNwleplpdgslpniNIRAAILKILTefpidleqFDRREQLKKSGLGKVIMFLSKSDEETTSNRKLAKDLVDKWVM
Flexible Loop (DISEMBL)
maydddpyrdedeeplMDYDDIRSDPEQSPEHQQHQNDNVLDDFDDDDVGDGGvsparersqtpvynnneksskprkrlvkkgakesgstpslideredeyddegedniigddfereieerkrkkwgkeggkdhntkkrlksggdkkfsssggkssgfkssragsirdNDKMLNEMWNAVaptgdseddqegvrtldddnfiddsgvdpsdrygsdseprfahdapqaeegdedeEIKELFkmgkkrkknekspAEIALLVENVMAELEVTAEEdaelnrqgkpainkLKKLSLLTEVLSKKQLQQEFLDHGVLTLLKNWLEPLPDGSLPNINIRAAILKILTEFPIDLEQFDRREQlkksglgkvimflsksdeettsnrklakdlvdkwvm
Low Complexity Region (SEG)
MAydddpyrdedeepLMDYDDIRSDPEQSPEHQQHQNdnvlddfddddvgdggvSPARERSQTPVYNNNEKSSKPRKRLVKKGAKESGSTPSLideredeyddegedniigddfereieerkrkkwgkeggkDHNTKKRLksggdkkfsssggkssgfkssRAGSIRDNDKMLNEMWNAVAPTGDSEDDQEGVRTLDDDNFIDDSGVDPSDRYGSDSEPRFAHDAPQAeegdedeeikeLFKMGKKRKKNEKSPAEIALLVENVMAELEVTAEEDAELNRQGKPAINKLKKLSLLTEVLSKKQLQQEFLDHGVLTLLKNWLEPLPDGSLPNINIRAAILKILTEFPIDLEQFDRREQLKKSGLGKVIMFLSKSDEETTSNRKLAKDLVDKWVM
Disordered region (IsUnstruct)
****************************************************************************************************************************************************************************************************************************************************************IALLVENVMAEL******************NKLKKLSLLTEVLSKKQLQQEFLDHGVLTLLKNWLEPLPDGSLPNINIRAAILKILTEFPIDLEQFDRREQLKKSGLGKVIMFL***********************
Disordered Region (DISOPRED)
*****DP************************************************************************************************************************************************************************************************************************************************************LVENVMAELEVTAEEDAELN*Q*KPAINKLKKLSLLTEVLSKKQLQQEFLDHGVLTLLKNWLEPLPDGSLPNINIRAAILKILTEFPIDLEQFDRREQLKKSGLGKVIMFLSKSDEETTSNRKLAKDLVDKWVM
Disordered Region (DISEMBL)
MAYDDDPYRDEDEEPLMDYDDIRS************NDNVLDDFDDDDVGDGGVSPARERSQTPVY**************************************GEDNIIGDDFEREIEERKR****************************************GSIRDNDKMLNEMWNAVAP**********VRTLDDDNFIDDSGVDPSDRYGSDSEPR***************EIKELFKMG*********PAEIALLVENVMAELEVTAEEDAELNRQGKPAINKLKKLSLLTEVLSKKQLQQEFLDHGVLTLLKNWLEPLPDGSLPNINIRAAILKILTEFPIDLEQFDRREQLKKSGLGKVIMFLSKSDEETTSNRKLAKDLVDKWVM
Disordered Region (DISPRO)
*****DPYRDEDEEPLMDYDDIR*****************************************************************************************************************************************************************************************************************EDEEIKELFK********EKSPAEIALLVENVMAELEVTAEEDAELNRQGKPAINKLKKLSLLTEVLSKKQLQQEFLDHGVLTLLKNWLEPLPDGSLPNINIRAAILKILTEFPIDLEQFDRREQLKKSGLGKVIMFLSKSDEETTSNRKLAKDLVDKWVM
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAYDDDPYRDEDEEPLMDYDDIRSDPEQSPEHQQHQNDNVLDDFDDDDVGDGGVSPARERSQTPVYNNNEKSSKPRKRLVKKGAKESGSTPSLIDEREDEYDDEGEDNIIGDDFEREIEERKRKKWGKEGGKDHNTKKRLKSGGDKKFSSSGGKSSGFKSSRAGSIRDNDKMLNEMWNAVAPTGDSEDDQEGVRTLDDDNFIDDSGVDPSDRYGSDSEPRFAHDAPQAEEGDEDEEIKELFKMGKKRKKNEKSPAEIALLxxxxxxxxxxxxxxxxxxxxxGKPAINKLKKLSLLTEVLSKKQLQQEFLDHGVLTLLKNWLEPLPDGSLPNINIRAAILKILTEFPIDLEQFDRREQLKKSGLGKVIMFLSKSDEETTSNRKLAKDLVDKWVM
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	393	2.2.26 [Sep-21-2011]
Q8C1D8	766	Protein IWS1 homolog OS=M	yes	no	0.323	0.165	0.416	3e-24
Q3SWT4	764	Protein IWS1 homolog OS=R	yes	no	0.323	0.166	0.409	4e-24
Q96ST2	819	Protein IWS1 homolog OS=H	yes	no	0.323	0.155	0.409	4e-24
Q505H7	909	Protein IWS1 homolog OS=X	yes	no	0.323	0.139	0.401	1e-22
Q6DE96	836	Protein IWS1 homolog A OS	N/A	no	0.323	0.151	0.409	1e-22
Q4P7X6	380	Transcription factor IWS1	N/A	no	0.386	0.4	0.374	6e-19
O42964	428	Transcription factor iws1	yes	no	0.302	0.278	0.384	3e-18
Q61MR2	497	IWS1-like protein OS=Caen	N/A	no	0.330	0.261	0.323	5e-16
Q19375	511	IWS1-like protein OS=Caen	yes	no	0.328	0.252	0.325	9e-16
Q4IJ11	428	Transcription factor IWS1	yes	no	0.361	0.331	0.342	9e-16

>sp|Q8C1D8|IWS1_MOUSE Protein IWS1 homolog OS=Mus musculus GN=Iws1 PE=1 SV=1

 Score =  112 bits (281), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 55/132 (41%), Positives = 84/132 (63%), Gaps = 5/132 (3%)

Query: 260 LVENVMAELEVTAEEDAELNRQGKPAINKLKKLSLLTEVLSKKQLQQEFLDHGVLTLLKN 319
           +V  ++ ++   AEED +LN Q KPA+ KL  L  +   L K+ L++ F+D GV++ +K 
Sbjct: 506 VVSAMIVKMNEAAEEDRQLNNQKKPALKKLTLLPTVVMHLKKQDLKETFIDSGVMSAIKE 565

Query: 320 WLEPLPDGSLPNINIRAAILKILTEFPIDLEQFDRREQLKKSGLGKVIMFLSKSDEETTS 379
           WL PLPD SLP + IR  +LKIL E P  + Q    E LK SG+G+ +M+L K  +E+ S
Sbjct: 566 WLSPLPDRSLPALKIREELLKILQELP-SVSQ----ETLKHSGIGRAVMYLYKHPKESRS 620

Query: 380 NRKLAKDLVDKW 391
           N+ +A  L+++W
Sbjct: 621 NKDMAGKLINEW 632

Mus musculus (taxid: 10090)

>sp|Q3SWT4|IWS1_RAT Protein IWS1 homolog OS=Rattus norvegicus GN=Iws1 PE=2 SV=1

 Score =  112 bits (281), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 54/132 (40%), Positives = 83/132 (62%), Gaps = 5/132 (3%)

Query: 260 LVENVMAELEVTAEEDAELNRQGKPAINKLKKLSLLTEVLSKKQLQQEFLDHGVLTLLKN 319
           +V  ++ ++   AEED +LN Q KPA+ KL  L  +   L K+ L++ F+D GV++ +K 
Sbjct: 505 VVSAMIVKMNEAAEEDRQLNNQKKPALKKLTLLPTVVMHLKKQDLKETFIDSGVMSAIKE 564

Query: 320 WLEPLPDGSLPNINIRAAILKILTEFPIDLEQFDRREQLKKSGLGKVIMFLSKSDEETTS 379
           WL PLPD SLP + IR  +LKIL E P        +E LK SG+G+ +M+L K  +E+ S
Sbjct: 565 WLSPLPDRSLPALKIREELLKILQELP-----SVSQETLKHSGIGRAVMYLYKHPKESRS 619

Query: 380 NRKLAKDLVDKW 391
           N+ +A  L+++W
Sbjct: 620 NKDMAGKLINEW 631

Rattus norvegicus (taxid: 10116)

>sp|Q96ST2|IWS1_HUMAN Protein IWS1 homolog OS=Homo sapiens GN=IWS1 PE=1 SV=2

 Score =  112 bits (281), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 54/132 (40%), Positives = 83/132 (62%), Gaps = 5/132 (3%)

Query: 260 LVENVMAELEVTAEEDAELNRQGKPAINKLKKLSLLTEVLSKKQLQQEFLDHGVLTLLKN 319
           +V  ++ ++   AEED +LN Q KPA+ KL  L  +   L K+ L++ F+D GV++ +K 
Sbjct: 559 VVSAMIVKMNEAAEEDRQLNNQKKPALKKLTLLPAVVMHLKKQDLKETFIDSGVMSAIKE 618

Query: 320 WLEPLPDGSLPNINIRAAILKILTEFPIDLEQFDRREQLKKSGLGKVIMFLSKSDEETTS 379
           WL PLPD SLP + IR  +LKIL E P        +E LK SG+G+ +M+L K  +E+ S
Sbjct: 619 WLSPLPDRSLPALKIREELLKILQELP-----SVSQETLKHSGIGRAVMYLYKHPKESRS 673

Query: 380 NRKLAKDLVDKW 391
           N+ +A  L+++W
Sbjct: 674 NKDMAGKLINEW 685

Homo sapiens (taxid: 9606)

>sp|Q505H7|IWS1_XENTR Protein IWS1 homolog OS=Xenopus tropicalis GN=iws1 PE=2 SV=1

 Score =  107 bits (268), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 53/132 (40%), Positives = 81/132 (61%), Gaps = 5/132 (3%)

Query: 260 LVENVMAELEVTAEEDAELNRQGKPAINKLKKLSLLTEVLSKKQLQQEFLDHGVLTLLKN 319
           +V  ++ ++   AEED  LN   KPA+ KL  L  +   L K+ L++ F+D GV++ +K 
Sbjct: 649 VVNAMIMKMNEAAEEDRNLNSSKKPALKKLTLLPTVVMHLKKQDLKETFIDSGVMSAIKE 708

Query: 320 WLEPLPDGSLPNINIRAAILKILTEFPIDLEQFDRREQLKKSGLGKVIMFLSKSDEETTS 379
           WL PLPD SLP + IR  +LKIL E P  + Q    E LK SG+G+ +M+L K  +E+  
Sbjct: 709 WLTPLPDRSLPALKIREELLKILQELP-SVSQ----ETLKHSGIGRAVMYLYKHPKESRP 763

Query: 380 NRKLAKDLVDKW 391
           N+ +A  L+++W
Sbjct: 764 NKDIAGKLINEW 775

Xenopus tropicalis (taxid: 8364)

>sp|Q6DE96|IWS1A_XENLA Protein IWS1 homolog A OS=Xenopus laevis GN=iws1-a PE=2 SV=1

 Score =  107 bits (268), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 54/132 (40%), Positives = 81/132 (61%), Gaps = 5/132 (3%)

Query: 260 LVENVMAELEVTAEEDAELNRQGKPAINKLKKLSLLTEVLSKKQLQQEFLDHGVLTLLKN 319
           +V  ++ ++   AEED  LN   KPA+ KL  L  +   L K+ L++ F+D GV++ +K 
Sbjct: 576 VVNAMIMKMTEAAEEDRNLNSSKKPALKKLTLLPTVVMHLKKQDLKETFIDSGVMSAIKE 635

Query: 320 WLEPLPDGSLPNINIRAAILKILTEFPIDLEQFDRREQLKKSGLGKVIMFLSKSDEETTS 379
           WL PLPD SLP + IR  +LKIL E P  + Q    E LK SG+G+ IM+L K  +E+  
Sbjct: 636 WLTPLPDRSLPALKIREELLKILQELP-SVSQ----ETLKHSGIGRAIMYLYKHPKESRP 690

Query: 380 NRKLAKDLVDKW 391
           N+ +A  L+++W
Sbjct: 691 NKDIAGKLINEW 702

Xenopus laevis (taxid: 8355)

>sp|Q4P7X6|IWS1_USTMA Transcription factor IWS1 OS=Ustilago maydis (strain 521 / FGSC 9021) GN=IWS1 PE=3 SV=1

 Score = 95.5 bits (236), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 61/163 (37%), Positives = 87/163 (53%), Gaps = 11/163 (6%)

Query: 234 DEEIKELFKMGKKRKKNEKSPAE-IALLVENVMA----ELEVTAEEDAELNRQGKPAINK 288
           D  I E  + GKK+   +++  + + LL +  +A    E+   A++D E NR  KPA NK
Sbjct: 165 DRMIDEALRAGKKKAPRKRAGEDDLDLLADEEVAALRREMVTAADDDEEANRLKKPATNK 224

Query: 289 LKKLSLLTEVLSKKQLQQEFLDHGVLTLLKNWLEPLPDGSLPNINIRAAILKILTEFPID 348
           LK L  +   L K  LQQ  LD+ +L  +K WLEPLPD SLP +NI+    +IL    ID
Sbjct: 225 LKLLPKVVATLQKNHLQQSILDNNLLEGVKRWLEPLPDKSLPALNIQHQFFQILERMTID 284

Query: 349 LEQFDRREQLKKSGLGKVIMFLSKSDEETTSNRKLAKDLVDKW 391
                    LK SGLGKV++F S         ++ A+ L++ W
Sbjct: 285 T------ISLKMSGLGKVVVFYSMCSRVEPKIKRSAEHLIEVW 321

Transcription factor involved in RNA polymerase II transcription regulation. May function in both SPT15/TBP post-recruitment and recruitment steps of transcription.

Ustilago maydis (strain 521 / FGSC 9021) (taxid: 237631)

>sp|O42964|IWS1_SCHPO Transcription factor iws1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=iws1 PE=3 SV=1

 Score = 93.6 bits (231), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 48/125 (38%), Positives = 77/125 (61%), Gaps = 6/125 (4%)

Query: 267 ELEVTAEEDAELNRQGKPAINKLKKLSLLTEVLSKKQLQQEFLDHGVLTLLKNWLEPLPD 326
           ++ + A  DAELN +  PA  KLK L L+  VL K  L    LD+ VL  ++ WLEPLPD
Sbjct: 195 QMRLAALRDAELNSEQLPATEKLKMLPLVDAVLRKTHLYDTILDNNVLDSVRMWLEPLPD 254

Query: 327 GSLPNINIRAAILKILTEFPIDLEQFDRREQLKKSGLGKVIMFLSKSDEETTSNRKLAKD 386
            SLP +NI+ +++ ILT+ PI      + E L++S +G++++F + S +     +++A +
Sbjct: 255 RSLPALNIQRSLMDILTKLPI------QTEHLRESKIGRIVLFYTISKKPEPFIKRIADN 308

Query: 387 LVDKW 391
           LV +W
Sbjct: 309 LVSEW 313

Transcription factor involved in RNA polymerase II transcription regulation. May function in both SPT15/TBP post-recruitment and recruitment steps of transcription.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q61MR2|IWS1_CAEBR IWS1-like protein OS=Caenorhabditis briggsae GN=iws-1 PE=3 SV=3

 Score = 85.9 bits (211), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 43/133 (32%), Positives = 74/133 (55%), Gaps = 3/133 (2%)

Query: 260 LVENVMAELEVTAEEDAELNRQGKPAINKLKKLSLLTEVLSKKQLQQEFLDHGVLTLLKN 319
           +V  ++ +++  A+ D   N + KPA  K+K L  +  ++ +  + +  +++G ++ L  
Sbjct: 226 MVAKLVEKMKHAAKSDRNANVERKPAFQKIKMLPEVKAIMLRAGIVEVLIENGFMSALSE 285

Query: 320 WLEPLPDGSLPNINIRAAILKILTEFPIDLEQFDRREQLKKSGLGKVIMFLSKSDEETTS 379
           WL PLPD  LP ++IR  +LK+L        + D R  LK+SGLGK +M L K   ET  
Sbjct: 286 WLAPLPDKCLPALDIRITVLKLLHN--PRFWKLD-RSTLKQSGLGKAVMMLYKHPNETKE 342

Query: 380 NRKLAKDLVDKWV 392
           N+ +A  L+ +W 
Sbjct: 343 NKAIANKLIGEWA 355

Caenorhabditis briggsae (taxid: 6238)

>sp|Q19375|IWS1_CAEEL IWS1-like protein OS=Caenorhabditis elegans GN=iws-1 PE=3 SV=1

 Score = 85.1 bits (209), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 43/132 (32%), Positives = 72/132 (54%), Gaps = 3/132 (2%)

Query: 261 VENVMAELEVTAEEDAELNRQGKPAINKLKKLSLLTEVLSKKQLQQEFLDHGVLTLLKNW 320
           V  ++  ++  A+ D   N + KPA  K+K L  +  ++ +  + +  +++G ++ L  W
Sbjct: 240 VSRLVERMKHAAKSDRNANIERKPAFQKIKMLPEVKAIMLRAGIVEVLIENGFMSALSEW 299

Query: 321 LEPLPDGSLPNINIRAAILKILTEFPIDLEQFDRREQLKKSGLGKVIMFLSKSDEETTSN 380
           L PLPD  LP ++IR  +LK+L        + D R  LK+SGLGK +M L K   ET  N
Sbjct: 300 LAPLPDKCLPALDIRITVLKLLHN--PRFWKLD-RSTLKQSGLGKAVMMLYKHPNETKEN 356

Query: 381 RKLAKDLVDKWV 392
           + +A  L+ +W 
Sbjct: 357 KGIANKLIGEWA 368

Caenorhabditis elegans (taxid: 6239)

>sp|Q4IJ11|IWS1_GIBZE Transcription factor IWS1 OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=IWS1 PE=3 SV=1

 Score = 85.1 bits (209), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 52/152 (34%), Positives = 88/152 (57%), Gaps = 10/152 (6%)

Query: 244 GKKRKKNEKS--PAEIALLVENVMAELEVTAEEDAELNRQGKPAINKLKKLSLLTEVLSK 301
           G+KRKK ++    AEI  L+ ++   +E   + D +    G+PA++KLK L  +T ++++
Sbjct: 169 GQKRKKKDEIDLEAEIDDLLADLKVRMEGACQSDNQAREAGQPALHKLKLLPEVTAIMNR 228

Query: 302 KQLQQEFL--DHGVLTLLKNWLEPLPDGSLPNINIRAAILKILTEFPIDLEQFDRREQLK 359
             +Q E L  D   L  +K +LEPL DGSLP  NI+  I   L +  I+      +E L 
Sbjct: 229 NNVQHEVLDPDTNFLQHVKFFLEPLNDGSLPAYNIQRDIFNALAKMNIE------KEALL 282

Query: 360 KSGLGKVIMFLSKSDEETTSNRKLAKDLVDKW 391
            SG+GKV++F ++S +   S +++A+ L+ +W
Sbjct: 283 SSGIGKVVVFYTRSKKPEPSIKRIAQRLLGEW 314

Transcription factor involved in RNA polymerase II transcription regulation. May function in both SPT15/TBP post-recruitment and recruitment steps of transcription.

Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) (taxid: 229533)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	393
255557639	500	Transcription factor IWS1, putative [Ric	0.916	0.72	0.714	1e-119
449436856	509	PREDICTED: IWS1-like protein-like [Cucum	0.941	0.726	0.685	1e-118
79356327	502	Transcription elongation factor (TFIIS)	0.913	0.715	0.605	1e-110
334182984	493	Transcription elongation factor (TFIIS)	0.913	0.728	0.605	1e-110
357484843	496	IWS1-like protein [Medicago truncatula]	0.916	0.725	0.620	1e-108
356531459	508	PREDICTED: protein IWS1 homolog [Glycine	0.933	0.722	0.633	1e-108
147865531	508	hypothetical protein VITISV_006539 [Viti	0.941	0.728	0.651	1e-107
297851642	503	hypothetical protein ARALYDRAFT_473395 [	0.910	0.711	0.589	1e-107
359479803	507	PREDICTED: protein IWS1 homolog [Vitis v	0.938	0.727	0.661	1e-107
356496120	499	PREDICTED: protein IWS1 homolog isoform	0.949	0.747	0.619	1e-105

>gi|255557639|ref|XP_002519849.1| Transcription factor IWS1, putative [Ricinus communis] gi|223540895|gb|EEF42453.1| Transcription factor IWS1, putative [Ricinus communis]

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 283/396 (71%), Positives = 307/396 (77%), Gaps = 36/396 (9%)

Query: 1   MAYDDDPYRDEDEEPLMDYDDIRSDPEQSPEHQQHQNDNVLDDFDDDDVGDGGVSPARER 60
           MAY+DDPYRDED EPLMDYDDI     QSPE QQ +      D  +DDV DG     RER
Sbjct: 1   MAYEDDPYRDEDGEPLMDYDDI-----QSPEPQQQE------DLLEDDV-DGWGEQERER 48

Query: 61  SQTPVYNNNEKSSKPRKRLVKK-----GAKESGSTPSLIDEREDEYDDEGEDNIIGDDFE 115
           SQTPVYNNN+K  KPRKRLVKK     G K     P L+DE  DE DDEG     G    
Sbjct: 49  SQTPVYNNNDKVEKPRKRLVKKSNSGIGEKGHFVVPELVDE--DEVDDEG----FG---- 98

Query: 116 REIEERKRKKWGKEGGKDHNTKKRLKSGGDKKFSSSGGKSSGFKSSRAGSIRDNDKMLNE 175
                RKRK +GK+    H   K+  S G+KK+SSSGGK       +    R  D  + E
Sbjct: 99  -----RKRKTFGKDF---HEKSKKKFSKGEKKYSSSGGKGGSSSKLKGKMARKEDGEVKE 150

Query: 176 MWNAVAPTGDSEDDQEGVRTLDDDNFIDDSGVDPSDRYGSDSEPRFAHDAPQAEEGDEDE 235
           MW+ +A  GDSEDD +GVRT+DDDNFIDDSGVDP+DRYGSD+EPR   DAPQAEEG+EDE
Sbjct: 151 MWDTIA-GGDSEDDHDGVRTMDDDNFIDDSGVDPADRYGSDNEPRSPTDAPQAEEGEEDE 209

Query: 236 EIKELFKMGKKRKKNEKSPAEIALLVENVMAELEVTAEEDAELNRQGKPAINKLKKLSLL 295
           EIKELFKMGKK+KKNEKSPAEIALLVENVMAELEVTAEEDAELNR+GKPAI KLKKL LL
Sbjct: 210 EIKELFKMGKKKKKNEKSPAEIALLVENVMAELEVTAEEDAELNRRGKPAITKLKKLPLL 269

Query: 296 TEVLSKKQLQQEFLDHGVLTLLKNWLEPLPDGSLPNINIRAAILKILTEFPIDLEQFDRR 355
           TEVLSKKQLQQEF+DHGVLTLLKNWLEPLPDGSLPNINIRAAILKILT+FPIDLEQ+DRR
Sbjct: 270 TEVLSKKQLQQEFIDHGVLTLLKNWLEPLPDGSLPNINIRAAILKILTDFPIDLEQYDRR 329

Query: 356 EQLKKSGLGKVIMFLSKSDEETTSNRKLAKDLVDKW 391
           EQLKKSGLGKVIMFLSKSDEETTSNRKLAKDLVDKW
Sbjct: 330 EQLKKSGLGKVIMFLSKSDEETTSNRKLAKDLVDKW 365

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449436856|ref|XP_004136208.1| PREDICTED: IWS1-like protein-like [Cucumis sativus] gi|449508046|ref|XP_004163201.1| PREDICTED: IWS1-like protein-like [Cucumis sativus]

 Score =  431 bits (1109), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 270/394 (68%), Positives = 307/394 (77%), Gaps = 24/394 (6%)

Query: 1   MAYDDDPYRDEDEEPLMDYDDIRSDPEQSPEHQQHQNDNVLDDFDDDDVGDGGVSPARER 60
           M Y+DDPYRDED EPLMD+D I+SD EQSPE   +  D +LD+    D+GD      R+R
Sbjct: 1   MGYEDDPYRDEDGEPLMDFDHIQSDGEQSPEP--YNPDELLDE----DIGDWA---GRQR 51

Query: 61  SQTPVYNNNEKSSKPRKRLVKKGAKESGSTPSLIDEREDEYDDEGEDNIIGDDFERE-IE 119
           SQTPVY+  E  ++PRKRLVKK     GS  S +D+  D+       +   D F RE  E
Sbjct: 52  SQTPVYDAEEPQARPRKRLVKKSLAGKGSVASNLDDDYDD-----ARDFTPDQFVREGSE 106

Query: 120 ERKRKKWGKEGGKDHNTKKRLKSGGDKKFSS-SGGKSSGFKSSRAG-SIRDNDKMLNEMW 177
           ERKRKK    G K+    KR K  GDKK  S SGGKS   K + +G  ++D D  + EMW
Sbjct: 107 ERKRKKGISSGKKE----KRFK--GDKKLGSGSGGKSRLPKKAFSGKGMKDQDGDVKEMW 160

Query: 178 NAVAPTGDSEDDQEGVRTLDDDNFIDDSGVDPSDRYGSDSEPRFAHDAPQAEEGDEDEEI 237
             +A  G S+DDQEG+RT+DDDNFIDDSGVDP+DRYGSD EPR    AP+AEEG+ED+EI
Sbjct: 161 ETIA-GGGSDDDQEGIRTVDDDNFIDDSGVDPADRYGSDDEPRSPRYAPEAEEGEEDDEI 219

Query: 238 KELFKMGKKRKKNEKSPAEIALLVENVMAELEVTAEEDAELNRQGKPAINKLKKLSLLTE 297
            ELFK+GKK+KKNEKSPAEIALLVENVMAELEVTAEEDA+LNRQGKPA+NKLKKL LLT+
Sbjct: 220 NELFKVGKKKKKNEKSPAEIALLVENVMAELEVTAEEDADLNRQGKPAVNKLKKLPLLTD 279

Query: 298 VLSKKQLQQEFLDHGVLTLLKNWLEPLPDGSLPNINIRAAILKILTEFPIDLEQFDRREQ 357
           VLSKKQLQQEFLDHGVLTLLKNWLEPLPDGSLPNINIR AILKILT+FPIDLEQ+DRREQ
Sbjct: 280 VLSKKQLQQEFLDHGVLTLLKNWLEPLPDGSLPNINIREAILKILTDFPIDLEQYDRREQ 339

Query: 358 LKKSGLGKVIMFLSKSDEETTSNRKLAKDLVDKW 391
           LKKSGLGKVIMFLSKSDEETTSNRKLAKDLVD+W
Sbjct: 340 LKKSGLGKVIMFLSKSDEETTSNRKLAKDLVDQW 373

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|79356327|ref|NP_174492.2| Transcription elongation factor (TFIIS) family protein [Arabidopsis thaliana] gi|332193317|gb|AEE31438.1| Transcription elongation factor (TFIIS) family protein [Arabidopsis thaliana]

 Score =  405 bits (1042), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 239/395 (60%), Positives = 291/395 (73%), Gaps = 36/395 (9%)

Query: 1   MAYDDDPYRDEDEEPLMDYDDIRSDPEQSPEHQQHQNDNVLDDFDDDDVGDGGVSPARER 60
           M ++DDPYRD D EP++D+DD  +D E S E  Q  ++++ DD  D D G+G        
Sbjct: 1   MGFEDDPYRDVDGEPIVDFDDFGNDREPSTEPLQDFDEDLADDIGDWD-GEG-------- 51

Query: 61  SQTPVYNNNEKSSKPRKRLVKKGAKESGS--TPSLIDEREDEYDDEGEDNIIGDDFEREI 118
           SQTPVY+N+ K +KPRKRLVKK + E  +   P LIDE   + DD   D  +G       
Sbjct: 52  SQTPVYDND-KVAKPRKRLVKKSSSERVTIDVPELIDE---DVDDAEFDEFMG------- 100

Query: 119 EERKRKKWGKEGGK-DHNTKKRLKSGGDKKFSSSG-GKSSGFKSSRAGSIRDNDKMLNEM 176
                   G+ GG  D++ K   K   +K+ SSSG GK    K    G  +  +  ++EM
Sbjct: 101 --------GRGGGSTDYDDKVGRKRKKEKERSSSGSGKEKRHKFPNRGERKSEE--IDEM 150

Query: 177 WNAVAPTGDSEDDQEGVRTLDDDNFIDDSGVDPSDRYGSDSEPRFAHDAPQAEEGDEDEE 236
           W ++A   + E+D+EGVRT+DDDNFIDD+G+DPS+RYG D+  R     PQAEEG++++E
Sbjct: 151 WKSIA--HNPENDEEGVRTMDDDNFIDDTGLDPSERYGGDAGDRSPTHYPQAEEGEDEDE 208

Query: 237 IKELFKMGKKRKKNEKSPAEIALLVENVMAELEVTAEEDAELNRQGKPAINKLKKLSLLT 296
           +  LFKMGKK+KK E++PAEIALLVENVMAELEVTAEEDAELNRQGKPAINKLKKLSLLT
Sbjct: 209 VNNLFKMGKKKKKTERNPAEIALLVENVMAELEVTAEEDAELNRQGKPAINKLKKLSLLT 268

Query: 297 EVLSKKQLQQEFLDHGVLTLLKNWLEPLPDGSLPNINIRAAILKILTEFPIDLEQFDRRE 356
           +VL KKQLQ EFLDHGVLTLLKNWLEPLPDGSLPNINIRAAIL++LT+FPIDL+Q+DRRE
Sbjct: 269 DVLGKKQLQTEFLDHGVLTLLKNWLEPLPDGSLPNINIRAAILRVLTDFPIDLDQYDRRE 328

Query: 357 QLKKSGLGKVIMFLSKSDEETTSNRKLAKDLVDKW 391
           QLKKSGLGKVIMFLSKSDEET SNR+LAKDLVDKW
Sbjct: 329 QLKKSGLGKVIMFLSKSDEETNSNRRLAKDLVDKW 363

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|334182984|ref|NP_001185126.1| Transcription elongation factor (TFIIS) family protein [Arabidopsis thaliana] gi|332193318|gb|AEE31439.1| Transcription elongation factor (TFIIS) family protein [Arabidopsis thaliana]

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 239/395 (60%), Positives = 291/395 (73%), Gaps = 36/395 (9%)

Query: 1   MAYDDDPYRDEDEEPLMDYDDIRSDPEQSPEHQQHQNDNVLDDFDDDDVGDGGVSPARER 60
           M ++DDPYRD D EP++D+DD  +D E S E  Q  ++++ DD  D D G+G        
Sbjct: 1   MGFEDDPYRDVDGEPIVDFDDFGNDREPSTEPLQDFDEDLADDIGDWD-GEG-------- 51

Query: 61  SQTPVYNNNEKSSKPRKRLVKKGAKESGS--TPSLIDEREDEYDDEGEDNIIGDDFEREI 118
           SQTPVY+N+ K +KPRKRLVKK + E  +   P LIDE   + DD   D  +G       
Sbjct: 52  SQTPVYDND-KVAKPRKRLVKKSSSERVTIDVPELIDE---DVDDAEFDEFMG------- 100

Query: 119 EERKRKKWGKEGGK-DHNTKKRLKSGGDKKFSSSG-GKSSGFKSSRAGSIRDNDKMLNEM 176
                   G+ GG  D++ K   K   +K+ SSSG GK    K    G  +  +  ++EM
Sbjct: 101 --------GRGGGSTDYDDKVGRKRKKEKERSSSGSGKEKRHKFPNRGERKSEE--IDEM 150

Query: 177 WNAVAPTGDSEDDQEGVRTLDDDNFIDDSGVDPSDRYGSDSEPRFAHDAPQAEEGDEDEE 236
           W ++A   + E+D+EGVRT+DDDNFIDD+G+DPS+RYG D+  R     PQAEEG++++E
Sbjct: 151 WKSIA--HNPENDEEGVRTMDDDNFIDDTGLDPSERYGGDAGDRSPTHYPQAEEGEDEDE 208

Query: 237 IKELFKMGKKRKKNEKSPAEIALLVENVMAELEVTAEEDAELNRQGKPAINKLKKLSLLT 296
           +  LFKMGKK+KK E++PAEIALLVENVMAELEVTAEEDAELNRQGKPAINKLKKLSLLT
Sbjct: 209 VNNLFKMGKKKKKTERNPAEIALLVENVMAELEVTAEEDAELNRQGKPAINKLKKLSLLT 268

Query: 297 EVLSKKQLQQEFLDHGVLTLLKNWLEPLPDGSLPNINIRAAILKILTEFPIDLEQFDRRE 356
           +VL KKQLQ EFLDHGVLTLLKNWLEPLPDGSLPNINIRAAIL++LT+FPIDL+Q+DRRE
Sbjct: 269 DVLGKKQLQTEFLDHGVLTLLKNWLEPLPDGSLPNINIRAAILRVLTDFPIDLDQYDRRE 328

Query: 357 QLKKSGLGKVIMFLSKSDEETTSNRKLAKDLVDKW 391
           QLKKSGLGKVIMFLSKSDEET SNR+LAKDLVDKW
Sbjct: 329 QLKKSGLGKVIMFLSKSDEETNSNRRLAKDLVDKW 363

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357484843|ref|XP_003612709.1| IWS1-like protein [Medicago truncatula] gi|355514044|gb|AES95667.1| IWS1-like protein [Medicago truncatula]

 Score =  399 bits (1026), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 244/393 (62%), Positives = 286/393 (72%), Gaps = 33/393 (8%)

Query: 1   MAYDDDPYRDEDEEPLMDYDDIRSDPEQSPEHQQHQNDNVLDDFDDDDVGDGGVSPARER 60
           M Y+D+PYRDED EPLMDYDD++SD E SPE QQ      LDDF+++DV +      R R
Sbjct: 1   MGYEDNPYRDEDGEPLMDYDDVQSDGEGSPEPQQ------LDDFEEEDVDNFH---DRAR 51

Query: 61  SQTPVYNNNEKSSKPRKRLVKKG--AKESGSTPSLIDEREDEYDDEGEDNIIGDDFEREI 118
           SQTPVY N+   SKPRKRL+KK    K+S + PS +++  +E D+  +     D    + 
Sbjct: 52  SQTPVYENDSSKSKPRKRLIKKSDTGKQSMALPSELEDELEEEDEGRKRKKGKDGGSGKK 111

Query: 119 EERKRKKWGKEGGKDHNTKKRLKSGGDKKFSSSGGKSSGFKSSRAGSIRDNDKMLNEMWN 178
           E+R  K      GK  +     K G        GGKS    + R G +       NEMW+
Sbjct: 112 EKR-LKGGSSSSGKGGSRFGGSKRG-------VGGKSG---NDREGEV-------NEMWD 153

Query: 179 AVAPTGDSEDDQEGVRTLDDDNFIDDSGVDPSDRYGSDSEPRFAHDAPQAEEGDEDEEIK 238
           A+A  G+SEDD EG R +DDDNFIDD+GV+P+  YG D EPR   DAPQAEEG+ED+EIK
Sbjct: 154 ALA--GNSEDDNEGARNMDDDNFIDDTGVEPA-LYGYD-EPRSPGDAPQAEEGEEDDEIK 209

Query: 239 ELFKMGKKRKKNEKSPAEIALLVENVMAELEVTAEEDAELNRQGKPAINKLKKLSLLTEV 298
           +LFKMGKK+KKNE+SPAEIALLVENVMAELEVTAEEDAELNRQ KPA+NKLKKL LL EV
Sbjct: 210 DLFKMGKKKKKNERSPAEIALLVENVMAELEVTAEEDAELNRQHKPAVNKLKKLPLLIEV 269

Query: 299 LSKKQLQQEFLDHGVLTLLKNWLEPLPDGSLPNINIRAAILKILTEFPIDLEQFDRREQL 358
           LSKKQLQ EFLDHGVL LLK+WLEPLPDGSLPNINIR AILKIL + PIDLE +DRREQL
Sbjct: 270 LSKKQLQLEFLDHGVLNLLKSWLEPLPDGSLPNINIRTAILKILNDLPIDLEHYDRREQL 329

Query: 359 KKSGLGKVIMFLSKSDEETTSNRKLAKDLVDKW 391
           K+SGLGKVIMFLS+SDEE   NR+LAKDLVDKW
Sbjct: 330 KRSGLGKVIMFLSRSDEEINVNRRLAKDLVDKW 362

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356531459|ref|XP_003534295.1| PREDICTED: protein IWS1 homolog [Glycine max]

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 252/398 (63%), Positives = 292/398 (73%), Gaps = 31/398 (7%)

Query: 1   MAYDDDPYRDEDEEPLMDYDDIRSDPEQSPEHQQHQNDNVLDDFDDD-DVGDGGVSPARE 59
           M Y+D+PYRDED EPLMDYDD++SD E SPE + HQ    LDDF++D D   G     R+
Sbjct: 1   MGYEDNPYRDEDGEPLMDYDDVQSDREPSPEPR-HQ----LDDFEEDVDEWRG-----RD 50

Query: 60  RSQTPVYNNNEKSSKPRKRLVKKG-AKESGSTPSLIDEREDEYDDEGEDNIIGDDFEREI 118
           RSQTPVY+ +   SKPRKRL+KK  A +    P L DE  + Y  EG             
Sbjct: 51  RSQTPVYDTDPSRSKPRKRLIKKSDAGKQAVEPELEDEDVEGYVPEGV-----------F 99

Query: 119 EERKRKKWGKEGGKDHNTKKRLKSGGDKKFSSSGGKSSGFKSSRAGSIR-----DNDKML 173
           +E    +  K+G +  + KK  +  G+K F S G KS     S           D+D  +
Sbjct: 100 DEGDAGRKRKKGKEGGSGKKEKRMKGEKSFGSGGAKSGSKFGSGKKGFGGKAGKDHDGEV 159

Query: 174 NEMWNAVAPTGDSEDDQEGVRTLDDDNFIDDSGVDPSDRYGSDSEPRFAHDAPQAEEGDE 233
            EMW+ +A  GDSEDDQEG+R +DDDNFIDD+GV+P+  YGSD EPR   DAPQAEEG+E
Sbjct: 160 KEMWDTIA-GGDSEDDQEGLRNVDDDNFIDDTGVEPA-YYGSD-EPRSPGDAPQAEEGEE 216

Query: 234 DEEIKELFKMGKKRKKNEKSPAEIALLVENVMAELEVTAEEDAELNRQGKPAINKLKKLS 293
           DEEIK+LFK+GKK+KKNE+SPAEIA LVE VMAELEVTAEEDAELNRQGKPA+NKLKKL+
Sbjct: 217 DEEIKDLFKIGKKKKKNERSPAEIAYLVETVMAELEVTAEEDAELNRQGKPAVNKLKKLN 276

Query: 294 LLTEVLSKKQLQQEFLDHGVLTLLKNWLEPLPDGSLPNINIRAAILKILTEFPIDLEQFD 353
           LLTEVLSKKQLQ EFLDHGVLTLLKNWLEPLPDGSLPNINIR  +LKIL +FPIDLEQ+D
Sbjct: 277 LLTEVLSKKQLQLEFLDHGVLTLLKNWLEPLPDGSLPNINIRTEVLKILNDFPIDLEQYD 336

Query: 354 RREQLKKSGLGKVIMFLSKSDEETTSNRKLAKDLVDKW 391
           RREQLKKSGLGKVIMFLSKSDEE   NRKLAK+LVDKW
Sbjct: 337 RREQLKKSGLGKVIMFLSKSDEEINVNRKLAKELVDKW 374

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147865531|emb|CAN83660.1| hypothetical protein VITISV_006539 [Vitis vinifera]

 Score =  396 bits (1017), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 256/393 (65%), Positives = 289/393 (73%), Gaps = 23/393 (5%)

Query: 1   MAYDDDPYRDEDEEPLMDYDDIRSDPEQSPEHQQHQNDNVLDDFDDDDVGDGGVSPARER 60
           M Y++DPYRDED EPLMD+D+++SD E   +    Q+D            +      RER
Sbjct: 1   MGYENDPYRDEDGEPLMDFDEVQSDREVEDQGHLLQDDIP--------DXNDDDWRRRER 52

Query: 61  SQTPVYNNNE--KSSKPRKRLVKKGAKESGSTPSLIDEREDEYDDEGEDNIIGDDFEREI 118
           S TPVY ++     SKPRKRLVKK AK S      IDE  D+     + ++  DDF R  
Sbjct: 53  SPTPVYGDDSGFSKSKPRKRLVKKSAKXSPLHYPGIDE--DDSPAAFQGDVDEDDFLR-- 108

Query: 119 EERKRKKWGKEGGKDHNTKKRLKSGGDKKFSSSGGKSSGFKSSRAGSIRDNDKMLNEMWN 178
              KRK    + G     KK      DK F S G K   F++     I+D D  + E+W+
Sbjct: 109 ---KRKDI--DSGSKRKEKKLRLEKKDKGFKS-GLKKGMFEA--VPRIQDGDAEVKELWD 160

Query: 179 AVAPTGDSEDDQEGVRTLDDDNFIDDSGVDPSDRYGSDSEPRFAHDAPQAEEGDEDEEIK 238
            +A  GDSEDD EG RT+DDDNFIDD+GVDP+DRYGSD E R   DAPQAEEG+EDEEIK
Sbjct: 161 TIA-GGDSEDDHEGPRTVDDDNFIDDTGVDPADRYGSDREARSPGDAPQAEEGEEDEEIK 219

Query: 239 ELFKMGKKRKKNEKSPAEIALLVENVMAELEVTAEEDAELNRQGKPAINKLKKLSLLTEV 298
           +LFKMGKK+KKNEKS AEIALLVENVMAELEVTAEEDAELNRQ KPAINKLKKL LLTEV
Sbjct: 220 QLFKMGKKKKKNEKSAAEIALLVENVMAELEVTAEEDAELNRQSKPAINKLKKLPLLTEV 279

Query: 299 LSKKQLQQEFLDHGVLTLLKNWLEPLPDGSLPNINIRAAILKILTEFPIDLEQFDRREQL 358
           LSKKQLQQEFLDHGVLTLLKNWLEPLPDGSLPNINIRAAIL+ILT+FPIDLEQ+DRREQL
Sbjct: 280 LSKKQLQQEFLDHGVLTLLKNWLEPLPDGSLPNINIRAAILRILTDFPIDLEQYDRREQL 339

Query: 359 KKSGLGKVIMFLSKSDEETTSNRKLAKDLVDKW 391
           KKSGLGKVIMFLSKSDEETT+NRKLAKDLVDKW
Sbjct: 340 KKSGLGKVIMFLSKSDEETTANRKLAKDLVDKW 372

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297851642|ref|XP_002893702.1| hypothetical protein ARALYDRAFT_473395 [Arabidopsis lyrata subsp. lyrata] gi|297339544|gb|EFH69961.1| hypothetical protein ARALYDRAFT_473395 [Arabidopsis lyrata subsp. lyrata]

 Score =  395 bits (1014), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 234/397 (58%), Positives = 290/397 (73%), Gaps = 39/397 (9%)

Query: 1   MAYDDDPYRDEDEEPLMDYDDIRSDPEQSPEHQQHQNDNVLDDFDDDDVGDGGVSPARER 60
           M ++DDPYRD D EP++D+DD  +D EQS E  Q  ++++ DD  D D G+G        
Sbjct: 1   MGFEDDPYRDVDGEPIVDFDDFENDREQSTEPLQDFDEDLADDIGDWD-GEG-------- 51

Query: 61  SQTPVYNNNEKSSKPRKRLVKKGA--KESGSTPSLIDE--REDEYDD--EGEDNIIGDDF 114
           SQTPVY+N+   +K RKRLVKK +  +E+   P LIDE   + E+D+   G     G D+
Sbjct: 52  SQTPVYDND-SVAKLRKRLVKKASSERETIEVPELIDEDVEDAEFDEFMGGRGGGGGTDY 110

Query: 115 EREIEERKRKKWGKEGGKDHNTKKRLKSGGDKKFSSSGGKSSGFKSSRAGSIRDNDKMLN 174
           + ++  RKRKK  +        +KR       KF + G + S              + ++
Sbjct: 111 DDKVG-RKRKKEKERSSSGSGKEKR------HKFPNRGERKS--------------EEID 149

Query: 175 EMWNAVAPTGDSEDDQEGVRTLDDDNFIDDSGVDPSDRYGSDSEPRFAHDAPQAEEGDED 234
           EMW ++A   + E+D+EGVRT+DDDNFIDD+G+DPS+RYG D+  R     PQAEEG++D
Sbjct: 150 EMWKSIA--HNPENDEEGVRTMDDDNFIDDTGLDPSERYGGDAGDRSPTHYPQAEEGEDD 207

Query: 235 EEIKELFKMGKKRKKNEKSPAEIALLVENVMAELEVTAEEDAELNRQGKPAINKLKKLSL 294
           +E+  LFKMGKK+KK E++PAEIAL VENVMAELEVTAEEDAELNR+GKPAINKLKKLSL
Sbjct: 208 DEVNNLFKMGKKKKKTERNPAEIALFVENVMAELEVTAEEDAELNRRGKPAINKLKKLSL 267

Query: 295 LTEVLSKKQLQQEFLDHGVLTLLKNWLEPLPDGSLPNINIRAAILKILTEFPIDLEQFDR 354
           LT+VL KKQLQ EFLDHGVLTLLKNWLEPLPDGSLPNINIRAAIL++LT+FPIDL+Q+DR
Sbjct: 268 LTDVLGKKQLQTEFLDHGVLTLLKNWLEPLPDGSLPNINIRAAILRVLTDFPIDLDQYDR 327

Query: 355 REQLKKSGLGKVIMFLSKSDEETTSNRKLAKDLVDKW 391
           REQLKKSGLGKVIMFLSKSDEET SNR+LAKDLVDKW
Sbjct: 328 REQLKKSGLGKVIMFLSKSDEETNSNRRLAKDLVDKW 364

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359479803|ref|XP_002276883.2| PREDICTED: protein IWS1 homolog [Vitis vinifera] gi|296086725|emb|CBI32360.3| unnamed protein product [Vitis vinifera]

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 260/393 (66%), Positives = 291/393 (74%), Gaps = 24/393 (6%)

Query: 1   MAYDDDPYRDEDEEPLMDYDDIRSDPEQSPEHQQHQNDNVLDDFDDDDVGDGGVSPARER 60
           M Y++DPYRDED EPLMD+D+++SD E   E Q H   + + D +DDD      SP    
Sbjct: 1   MGYENDPYRDEDGEPLMDFDEVQSDREV--EDQGHLLQDDIPDDNDDDWRRRERSP---- 54

Query: 61  SQTPVYNNNE--KSSKPRKRLVKKGAKESGSTPSLIDEREDEYDDEGEDNIIGDDFEREI 118
             TPVY ++     SKPRKRLVKK AKES      IDE +     +G  ++  DDF R  
Sbjct: 55  --TPVYGDDSGFSKSKPRKRLVKKSAKESPLHYPGIDEDDSPAAFQG--DVDEDDFLR-- 108

Query: 119 EERKRKKWGKEGGKDHNTKKRLKSGGDKKFSSSGGKSSGFKSSRAGSIRDNDKMLNEMWN 178
              KRK    + G     KK      DK F S  G   G   SR    +D D  + E+W+
Sbjct: 109 ---KRKDI--DSGSKRKEKKLRLEKKDKGFKS--GLKKGM--SRRSKDQDGDAEVKELWD 159

Query: 179 AVAPTGDSEDDQEGVRTLDDDNFIDDSGVDPSDRYGSDSEPRFAHDAPQAEEGDEDEEIK 238
            +A  GDSEDD EG RT+DDDNFIDD+GVDP+DRYGSD E R   DAPQAEEG+EDEEIK
Sbjct: 160 TIA-GGDSEDDHEGPRTVDDDNFIDDTGVDPADRYGSDREARSPGDAPQAEEGEEDEEIK 218

Query: 239 ELFKMGKKRKKNEKSPAEIALLVENVMAELEVTAEEDAELNRQGKPAINKLKKLSLLTEV 298
           +LFKMGKK+KKNEKS AEIALLVENVMAELEVTAEEDAELNRQ KPAINKLKKL LLTEV
Sbjct: 219 QLFKMGKKKKKNEKSAAEIALLVENVMAELEVTAEEDAELNRQSKPAINKLKKLPLLTEV 278

Query: 299 LSKKQLQQEFLDHGVLTLLKNWLEPLPDGSLPNINIRAAILKILTEFPIDLEQFDRREQL 358
           LSKKQLQQEFLDHGVLTLLKNWLEPLPDGSLPNINIRAAIL+ILT+FPIDLEQ+DRREQL
Sbjct: 279 LSKKQLQQEFLDHGVLTLLKNWLEPLPDGSLPNINIRAAILRILTDFPIDLEQYDRREQL 338

Query: 359 KKSGLGKVIMFLSKSDEETTSNRKLAKDLVDKW 391
           KKSGLGKVIMFLSKSDEETT+NRKLAKDLVDKW
Sbjct: 339 KKSGLGKVIMFLSKSDEETTANRKLAKDLVDKW 371

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356496120|ref|XP_003516918.1| PREDICTED: protein IWS1 homolog isoform 2 [Glycine max]

 Score =  386 bits (992), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 243/392 (61%), Positives = 287/392 (73%), Gaps = 19/392 (4%)

Query: 1   MAYDDDPYRDEDEEPLMDYDDIRSDPEQSPEHQQHQNDNVLDDFDDDDVGDGGVSPARER 60
           M Y+D+PYRDED EPLMDYDDI+SD E SPE ++  +D            D      R+R
Sbjct: 1   MGYEDNPYRDEDGEPLMDYDDIQSDREPSPEPRRQDDDFD---------EDVDEWRGRDR 51

Query: 61  SQTPVYNNNEKSSKPRKRLVKKG-AKESGSTPSLIDEREDEYDDEGEDNIIGDDFEREIE 119
           SQTPVY+ +   SKPRKRL+KK  A +    P L DE  + Y  E     + D+ +   +
Sbjct: 52  SQTPVYDTDPSRSKPRKRLIKKSDAGKQAVEPELEDEDVEGYVPEA----MFDEADTGRK 107

Query: 120 ERKRKKWGKEGGKDHNTKKRLKSGGDKKFSSSGGKSSGFKSSRAGSIRDNDKMLNEMWNA 179
            +K K+ G    +     ++       K  S  G        +AG  +D+D  + EMW+ 
Sbjct: 108 RKKGKEGGSGKKEKRMKGEKSFGSSGGKSGSKFGSGKKGFGGKAG--KDHDGEVKEMWDT 165

Query: 180 VAPTGDSEDDQEGVRTLDDDNFIDDSGVDPSDRYGSDSEPRFAHDAPQAEEGDEDEEIKE 239
           +A  GDSEDDQEGVR +DDDNFIDD+GV+P+  YGSD EPR   DAPQAEEG+EDEEIK+
Sbjct: 166 IA-GGDSEDDQEGVRNVDDDNFIDDTGVEPA-YYGSD-EPRSPVDAPQAEEGEEDEEIKD 222

Query: 240 LFKMGKKRKKNEKSPAEIALLVENVMAELEVTAEEDAELNRQGKPAINKLKKLSLLTEVL 299
           LFK+GKK+KKNE+SPAEIA LVE VMAELEVTAEEDAELNRQGKPAINKLKKL+LLTEVL
Sbjct: 223 LFKIGKKKKKNERSPAEIAYLVETVMAELEVTAEEDAELNRQGKPAINKLKKLNLLTEVL 282

Query: 300 SKKQLQQEFLDHGVLTLLKNWLEPLPDGSLPNINIRAAILKILTEFPIDLEQFDRREQLK 359
           SKKQLQ EFLDHGVLTLLKNWLEPLPDGSLPNINIR+ +LKIL +FPIDLEQ+DRREQLK
Sbjct: 283 SKKQLQLEFLDHGVLTLLKNWLEPLPDGSLPNINIRSEVLKILNDFPIDLEQYDRREQLK 342

Query: 360 KSGLGKVIMFLSKSDEETTSNRKLAKDLVDKW 391
           KSGLGKVIMFLSKSDEE ++NRKLAK+LVDKW
Sbjct: 343 KSGLGKVIMFLSKSDEEISANRKLAKELVDKW 374

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	393
TAIR|locus:2031715	502	IWS1 [Arabidopsis thaliana (ta	0.552	0.432	0.771	6.9e-94
TAIR|locus:2117199	406	IWS2 [Arabidopsis thaliana (ta	0.386	0.374	0.697	9.9e-54
FB|FBgn0030738	820	CG9915 [Drosophila melanogaste	0.513	0.246	0.322	2.5e-24
UNIPROTKB|Q96ST2	819	IWS1 "Protein IWS1 homolog" [H	0.541	0.260	0.325	4.7e-24
UNIPROTKB|E2RCQ3	822	IWS1 "Uncharacterized protein"	0.541	0.259	0.325	1.3e-23
UNIPROTKB|J9PAW4	848	IWS1 "Uncharacterized protein"	0.541	0.251	0.325	1.3e-23
UNIPROTKB|E1BFW2	822	IWS1 "Uncharacterized protein"	0.541	0.259	0.321	2.7e-23
RGD|1304762	764	Iws1 "IWS1 homolog (S. cerevis	0.541	0.278	0.321	4.9e-23
UNIPROTKB|Q3SWT4	764	Iws1 "Protein IWS1 homolog" [R	0.541	0.278	0.321	4.9e-23
MGI|MGI:1920723	766	Iws1 "IWS1 homolog (S. cerevis	0.541	0.278	0.321	4.9e-23

TAIR|locus:2031715 IWS1 [Arabidopsis thaliana (taxid:3702)]

 Score = 864 (309.2 bits), Expect = 6.9e-94, Sum P(2) = 6.9e-94
 Identities = 169/219 (77%), Positives = 191/219 (87%)

Query:   173 LNEMWNAVAPTGDSEDDQEGVRTLDDDNFIDDSGVDPSDRYGSDSEPRFAHDAPQAXXXX 232
             ++EMW ++A   + E+D+EGVRT+DDDNFIDD+G+DPS+RYG D+  R     PQA    
Sbjct:   147 IDEMWKSIAH--NPENDEEGVRTMDDDNFIDDTGLDPSERYGGDAGDRSPTHYPQAEEGE 204

Query:   233 XXXXXXXLFKMGKKRKKNEKSPAEIALLVENVMAELEVTAEEDAELNRQGKPAINKLKKL 292
                    LFKMGKK+KK E++PAEIALLVENVMAELEVTAEEDAELNRQGKPAINKLKKL
Sbjct:   205 DEDEVNNLFKMGKKKKKTERNPAEIALLVENVMAELEVTAEEDAELNRQGKPAINKLKKL 264

Query:   293 SLLTEVLSKKQLQQEFLDHGVLTLLKNWLEPLPDGSLPNINIRAAILKILTEFPIDLEQF 352
             SLLT+VL KKQLQ EFLDHGVLTLLKNWLEPLPDGSLPNINIRAAIL++LT+FPIDL+Q+
Sbjct:   265 SLLTDVLGKKQLQTEFLDHGVLTLLKNWLEPLPDGSLPNINIRAAILRVLTDFPIDLDQY 324

Query:   353 DRREQLKKSGLGKVIMFLSKSDEETTSNRKLAKDLVDKW 391
             DRREQLKKSGLGKVIMFLSKSDEET SNR+LAKDLVDKW
Sbjct:   325 DRREQLKKSGLGKVIMFLSKSDEETNSNRRLAKDLVDKW 363

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0009742 "brassinosteroid mediated signaling pathway" evidence=IMP

GO:0032784 "regulation of DNA-dependent transcription, elongation" evidence=TAS

GO:0006487 "protein N-linked glycosylation" evidence=RCA

GO:0006623 "protein targeting to vacuole" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0016192 "vesicle-mediated transport" evidence=RCA

GO:0048193 "Golgi vesicle transport" evidence=RCA

TAIR|locus:2117199 IWS2 [Arabidopsis thaliana (taxid:3702)]

 Score = 536 (193.7 bits), Expect = 9.9e-54, Sum P(2) = 9.9e-54
 Identities = 106/152 (69%), Positives = 122/152 (80%)

Query:   240 LFKMGKKRKKNEKSPAEIALLVENVMAELEVTAEEDAELNRQGKPAINKLKKLSLLTEVL 299
             LF + KK+ K +K+  EI + VE VMA LE+  E+D   NR+GKPAINKL KL LL E L
Sbjct:   126 LFSLRKKKSKCDKTSMEIGMQVEQVMANLEIAVEDDVICNREGKPAINKLMKLPLLNETL 185

Query:   300 SKKQLQQEFLDHGVLTLLKNWLEPLPDGSLPNINIRAAILKILTEFPIDLEQFDRREQLK 359
             SKK LQ EFLDHGVL LLKNWLEPLPDGSLPNINIR+A+L IL +F IDL+Q  RREQL 
Sbjct:   186 SKKPLQGEFLDHGVLNLLKNWLEPLPDGSLPNINIRSAVLMILNDFRIDLDQDSRREQLI 245

Query:   360 KSGLGKVIMFLSKSDEETTSNRKLAKDLVDKW 391
             KSGLGKVIMFLSKSDEETT NR+LA D+++KW
Sbjct:   246 KSGLGKVIMFLSKSDEETTPNRRLANDIINKW 277

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

FB|FBgn0030738 CG9915 [Drosophila melanogaster (taxid:7227)]

 Score = 275 (101.9 bits), Expect = 2.5e-24, Sum P(2) = 2.5e-24
 Identities = 72/223 (32%), Positives = 118/223 (52%)

Query:   185 DSEDD-----QEGVRTLDDDNFID--DSGVDPS---DRY--GSDSEPRFAHDAPQAXXXX 232
             +S+DD     ++ V+  D DN  D  D G+      D+    SD E     + P+     
Sbjct:   469 ESDDDGPKVTKKRVKITDTDNEEDEQDKGIGKEKSQDKITESSDDENTPISNEPENSNFI 528

Query:   233 XXXXXXXLFKMGKKRKKNEKSPAEIAL----LVENVMAELEVTAEEDAELNRQGKPAINK 288
                    + K  +KR +  K   ++      L++ ++  ++  +++D +LN  G+PA  K
Sbjct:   529 SDFDAMLMRKKEEKRVRRRKRDIDLINDNDDLIDQLIVSMKNASDDDRQLNMIGQPATKK 588

Query:   289 LKKLSLLTEVLSKKQLQQEFLDHGVLTLLKNWLEPLPDGSLPNINIRAAILKILTEFPID 348
             +  L  +   L KK LQ  FL+H +L +L +WL PLP+ SLP + IR +ILK+L++FP  
Sbjct:   589 ISMLKQVMSQLIKKHLQLAFLEHNILNVLTDWLAPLPNKSLPCLQIRESILKLLSDFPT- 647

Query:   349 LEQFDRREQLKKSGLGKVIMFLSKSDEETTSNRKLAKDLVDKW 391
             +E    +  LK+SG+GK +M+L K  +ET SNR  A  L+ +W
Sbjct:   648 IE----KGLLKQSGIGKAVMYLYKHPQETKSNRDRAGRLISEW 686

GO:0005634 "nucleus" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

UNIPROTKB|Q96ST2 IWS1 "Protein IWS1 homolog" [Homo sapiens (taxid:9606)]

 Score = 286 (105.7 bits), Expect = 4.7e-24, P = 4.7e-24
 Identities = 73/224 (32%), Positives = 116/224 (51%)

Query:   174 NEMWNAVAPT-GDSEDDQEGVRT-LDDDNFIDDSG-VDPSDRYGSDSEPRFAHDAPQAXX 230
             NE  N +A   G+S D++E   T  + ++  ++ G     +   SDS+            
Sbjct:   467 NEEENLIADIFGESGDEEEEEFTGFNQEDLEEEKGETQVKEAEDSDSDDNIKRGKHMDFL 526

Query:   231 XXXXXXXXXLFKMGKKRKKNEKSPAEIAL---LVENVMAELEVTAEEDAELNRQGKPAIN 287
                         M  KR++N      I+    +V  ++ ++   AEED +LN Q KPA+ 
Sbjct:   527 SDFEMMLQRKKSMSGKRRRNRDGGTFISDADDVVSAMIVKMNEAAEEDRQLNNQKKPALK 586

Query:   288 KLKKLSLLTEVLSKKQLQQEFLDHGVLTLLKNWLEPLPDGSLPNINIRAAILKILTEFPI 347
             KL  L  +   L K+ L++ F+D GV++ +K WL PLPD SLP + IR  +LKIL E P 
Sbjct:   587 KLTLLPAVVMHLKKQDLKETFIDSGVMSAIKEWLSPLPDRSLPALKIREELLKILQELP- 645

Query:   348 DLEQFDRREQLKKSGLGKVIMFLSKSDEETTSNRKLAKDLVDKW 391
              + Q    E LK SG+G+ +M+L K  +E+ SN+ +A  L+++W
Sbjct:   646 SVSQ----ETLKHSGIGRAVMYLYKHPKESRSNKDMAGKLINEW 685

GO:0003677 "DNA binding" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|E2RCQ3 IWS1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 282 (104.3 bits), Expect = 1.3e-23, P = 1.3e-23
 Identities = 73/224 (32%), Positives = 116/224 (51%)

Query:   174 NEMWNAVAPT-GDSEDDQEGVRT-LDDDNFIDD-SGVDPSDRYGSDSEPRFAHDAPQAXX 230
             NE  N +A   G+S D++E   T  + ++  ++ S     +   SDS+            
Sbjct:   470 NEEENLIADIFGESGDEEEEEFTGFNQEDLEEEKSETQVKEAEDSDSDDNIKRGKHMDFL 529

Query:   231 XXXXXXXXXLFKMGKKRKKNEKSPAEIAL---LVENVMAELEVTAEEDAELNRQGKPAIN 287
                         M  KR++N      I+    +V  ++ ++   AEED +LN Q KPA+ 
Sbjct:   530 SDFEMMLQRKKSMSGKRRRNRDGGTFISDADDVVSAMIVKMNEAAEEDRQLNNQKKPALK 589

Query:   288 KLKKLSLLTEVLSKKQLQQEFLDHGVLTLLKNWLEPLPDGSLPNINIRAAILKILTEFPI 347
             KL  L  +   L K+ L++ F+D GV++ +K WL PLPD SLP + IR  +LKIL E P 
Sbjct:   590 KLTLLPTVVMHLKKQDLKETFIDSGVMSAIKEWLSPLPDRSLPALKIREELLKILQELP- 648

Query:   348 DLEQFDRREQLKKSGLGKVIMFLSKSDEETTSNRKLAKDLVDKW 391
              + Q    E LK SG+G+ +M+L K  +E+ SN+ +A  L+++W
Sbjct:   649 SVSQ----ETLKHSGIGRAVMYLYKHPKESRSNKDMAGKLINEW 688

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

UNIPROTKB|J9PAW4 IWS1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 282 (104.3 bits), Expect = 1.3e-23, P = 1.3e-23
 Identities = 73/224 (32%), Positives = 116/224 (51%)

Query:   174 NEMWNAVAPT-GDSEDDQEGVRT-LDDDNFIDD-SGVDPSDRYGSDSEPRFAHDAPQAXX 230
             NE  N +A   G+S D++E   T  + ++  ++ S     +   SDS+            
Sbjct:   496 NEEENLIADIFGESGDEEEEEFTGFNQEDLEEEKSETQVKEAEDSDSDDNIKRGKHMDFL 555

Query:   231 XXXXXXXXXLFKMGKKRKKNEKSPAEIAL---LVENVMAELEVTAEEDAELNRQGKPAIN 287
                         M  KR++N      I+    +V  ++ ++   AEED +LN Q KPA+ 
Sbjct:   556 SDFEMMLQRKKSMSGKRRRNRDGGTFISDADDVVSAMIVKMNEAAEEDRQLNNQKKPALK 615

Query:   288 KLKKLSLLTEVLSKKQLQQEFLDHGVLTLLKNWLEPLPDGSLPNINIRAAILKILTEFPI 347
             KL  L  +   L K+ L++ F+D GV++ +K WL PLPD SLP + IR  +LKIL E P 
Sbjct:   616 KLTLLPTVVMHLKKQDLKETFIDSGVMSAIKEWLSPLPDRSLPALKIREELLKILQELP- 674

Query:   348 DLEQFDRREQLKKSGLGKVIMFLSKSDEETTSNRKLAKDLVDKW 391
              + Q    E LK SG+G+ +M+L K  +E+ SN+ +A  L+++W
Sbjct:   675 SVSQ----ETLKHSGIGRAVMYLYKHPKESRSNKDMAGKLINEW 714

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

UNIPROTKB|E1BFW2 IWS1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 279 (103.3 bits), Expect = 2.7e-23, P = 2.7e-23
 Identities = 72/224 (32%), Positives = 116/224 (51%)

Query:   174 NEMWNAVAPT-GDSEDDQEGVRT-LDDDNFIDD-SGVDPSDRYGSDSEPRFAHDAPQAXX 230
             NE  N +A   G+S D++E   T  + ++  ++ S     +   SDS+            
Sbjct:   470 NEEENLIADIFGESGDEEEEEFTGFNQEDLEEEKSETQVKEAEDSDSDDNIKRGKHMDFL 529

Query:   231 XXXXXXXXXLFKMGKKRKKNEKSPAEIAL---LVENVMAELEVTAEEDAELNRQGKPAIN 287
                         M  KR++N      I+    +V  ++ ++   AEED +LN Q KPA+ 
Sbjct:   530 SDFEMMLQRKKSMSGKRRRNRDGGTFISDADDVVSAMIVKMNEAAEEDRQLNNQKKPALK 589

Query:   288 KLKKLSLLTEVLSKKQLQQEFLDHGVLTLLKNWLEPLPDGSLPNINIRAAILKILTEFPI 347
             KL  L  +   L K+ L++ F+D GV++ +K WL PLPD SLP + IR  +L+IL E P 
Sbjct:   590 KLTLLPTVVMHLKKQDLKETFIDSGVMSAIKEWLSPLPDRSLPALKIREELLRILQELP- 648

Query:   348 DLEQFDRREQLKKSGLGKVIMFLSKSDEETTSNRKLAKDLVDKW 391
              + Q    E LK SG+G+ +M+L K  +E+ SN+ +A  L+++W
Sbjct:   649 SVSQ----ETLKHSGIGRAVMYLYKHPKESRSNKDMAGKLINEW 688

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

RGD|1304762 Iws1 "IWS1 homolog (S. cerevisiae)" [Rattus norvegicus (taxid:10116)]

 Score = 276 (102.2 bits), Expect = 4.9e-23, P = 4.9e-23
 Identities = 72/224 (32%), Positives = 115/224 (51%)

Query:   174 NEMWNAVAPT-GDSEDDQEGVRT-LDDDNFIDDSG-VDPSDRYGSDSEPRFAHDAPQAXX 230
             NE  N +A   G+S D++E   T  + ++  ++       +   SDS+            
Sbjct:   413 NEEENLIADIFGESGDEEEEEFTGFNQEDLEEEKNETQLKEAEDSDSDDNIKRGKHMDFL 472

Query:   231 XXXXXXXXXLFKMGKKRKKNEKSPAEIAL---LVENVMAELEVTAEEDAELNRQGKPAIN 287
                         M  KR++N      I+    +V  ++ ++   AEED +LN Q KPA+ 
Sbjct:   473 SDFEMMLQRKKSMCGKRRRNRDGGTFISDADDVVSAMIVKMNEAAEEDRQLNNQKKPALK 532

Query:   288 KLKKLSLLTEVLSKKQLQQEFLDHGVLTLLKNWLEPLPDGSLPNINIRAAILKILTEFPI 347
             KL  L  +   L K+ L++ F+D GV++ +K WL PLPD SLP + IR  +LKIL E P 
Sbjct:   533 KLTLLPTVVMHLKKQDLKETFIDSGVMSAIKEWLSPLPDRSLPALKIREELLKILQELP- 591

Query:   348 DLEQFDRREQLKKSGLGKVIMFLSKSDEETTSNRKLAKDLVDKW 391
              + Q    E LK SG+G+ +M+L K  +E+ SN+ +A  L+++W
Sbjct:   592 SVSQ----ETLKHSGIGRAVMYLYKHPKESRSNKDMAGKLINEW 631

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

UNIPROTKB|Q3SWT4 Iws1 "Protein IWS1 homolog" [Rattus norvegicus (taxid:10116)]

 Score = 276 (102.2 bits), Expect = 4.9e-23, P = 4.9e-23
 Identities = 72/224 (32%), Positives = 115/224 (51%)

Query:   174 NEMWNAVAPT-GDSEDDQEGVRT-LDDDNFIDDSG-VDPSDRYGSDSEPRFAHDAPQAXX 230
             NE  N +A   G+S D++E   T  + ++  ++       +   SDS+            
Sbjct:   413 NEEENLIADIFGESGDEEEEEFTGFNQEDLEEEKNETQLKEAEDSDSDDNIKRGKHMDFL 472

Query:   231 XXXXXXXXXLFKMGKKRKKNEKSPAEIAL---LVENVMAELEVTAEEDAELNRQGKPAIN 287
                         M  KR++N      I+    +V  ++ ++   AEED +LN Q KPA+ 
Sbjct:   473 SDFEMMLQRKKSMCGKRRRNRDGGTFISDADDVVSAMIVKMNEAAEEDRQLNNQKKPALK 532

Query:   288 KLKKLSLLTEVLSKKQLQQEFLDHGVLTLLKNWLEPLPDGSLPNINIRAAILKILTEFPI 347
             KL  L  +   L K+ L++ F+D GV++ +K WL PLPD SLP + IR  +LKIL E P 
Sbjct:   533 KLTLLPTVVMHLKKQDLKETFIDSGVMSAIKEWLSPLPDRSLPALKIREELLKILQELP- 591

Query:   348 DLEQFDRREQLKKSGLGKVIMFLSKSDEETTSNRKLAKDLVDKW 391
              + Q    E LK SG+G+ +M+L K  +E+ SN+ +A  L+++W
Sbjct:   592 SVSQ----ETLKHSGIGRAVMYLYKHPKESRSNKDMAGKLINEW 631

GO:0003677 "DNA binding" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

MGI|MGI:1920723 Iws1 "IWS1 homolog (S. cerevisiae)" [Mus musculus (taxid:10090)]

 Score = 276 (102.2 bits), Expect = 4.9e-23, P = 4.9e-23
 Identities = 72/224 (32%), Positives = 115/224 (51%)

Query:   174 NEMWNAVAPT-GDSEDDQEGVRT-LDDDNFIDDSG-VDPSDRYGSDSEPRFAHDAPQAXX 230
             NE  N +A   G+S D++E   T  + ++  ++       +   SDS+            
Sbjct:   414 NEEENLIADIFGESGDEEEEEFTGFNQEDLEEEKNETQLKEAEDSDSDDNIKRGKHMDFL 473

Query:   231 XXXXXXXXXLFKMGKKRKKNEKSPAEIAL---LVENVMAELEVTAEEDAELNRQGKPAIN 287
                         M  KR++N      I+    +V  ++ ++   AEED +LN Q KPA+ 
Sbjct:   474 SDFEMMLQRKKSMCGKRRRNRDGGTFISDADDVVSAMIVKMNEAAEEDRQLNNQKKPALK 533

Query:   288 KLKKLSLLTEVLSKKQLQQEFLDHGVLTLLKNWLEPLPDGSLPNINIRAAILKILTEFPI 347
             KL  L  +   L K+ L++ F+D GV++ +K WL PLPD SLP + IR  +LKIL E P 
Sbjct:   534 KLTLLPTVVMHLKKQDLKETFIDSGVMSAIKEWLSPLPDRSLPALKIREELLKILQELP- 592

Query:   348 DLEQFDRREQLKKSGLGKVIMFLSKSDEETTSNRKLAKDLVDKW 391
              + Q    E LK SG+G+ +M+L K  +E+ SN+ +A  L+++W
Sbjct:   593 SVSQ----ETLKHSGIGRAVMYLYKHPKESRSNKDMAGKLINEW 632

GO:0003674 "molecular_function" evidence=ND

GO:0003677 "DNA binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	393
COG5139	397	COG5139, COG5139, Uncharacterized conserved protei	3e-23
pfam08711	51	pfam08711, Med26, TFIIS helical bundle-like domain	1e-09

>gnl|CDD|227468 COG5139, COG5139, Uncharacterized conserved protein [Function unknown]

 Score = 99.8 bits (248), Expect = 3e-23
 Identities = 55/171 (32%), Positives = 89/171 (52%), Gaps = 9/171 (5%)

Query: 224 DAPQAEEGDEDEEIKELFKMGKKRKKNEKSPAEIALLVENVMA---ELEVTAEEDAELNR 280
           D  +A+ G+  +      K     +   K       + E  +     ++  A++D   N 
Sbjct: 118 DFTEAQSGELGDTGDRQLKAPAASRARRKEDLLEQTVDEISLRLKKRMQDAAKKDNANNL 177

Query: 281 QGKPAINKLKKLSLLTEVLSKKQLQQEFLDHGVLTLLKNWLEPLPDGSLPNINIRAAILK 340
           +G+PA  K+K L  +++VL KK LQ   LD+ +L  ++ WLEPLPD SLPNI I+ ++L 
Sbjct: 178 EGRPATGKIKNLPEVSDVLMKKALQDTILDNNILDSVRGWLEPLPDKSLPNIKIQKSLLD 237

Query: 341 ILTEFPIDLEQFDRREQLKKSGLGKVIMFLSKSDEETTSNRKLAKDLVDKW 391
           +L   PI        E L +SG+G+++ F + S +E    R+ AK LV +W
Sbjct: 238 VLKTLPI------HTEHLVESGVGRIVYFYTISKKEEKEVRRSAKALVQEW 282

Length = 397

>gnl|CDD|204037 pfam08711, Med26, TFIIS helical bundle-like domain

 Score = 52.9 bits (128), Expect = 1e-09
 Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 8/54 (14%)

Query: 338 ILKILTEFPIDLEQFDRREQLKKSGLGKVIMFLSKSDEETTSNRKLAKDLVDKW 391
           +LK L + PI        E L+++G+GK +  L K + E    +KLAK L+ KW
Sbjct: 2   LLKELKKLPIT------EELLRETGIGKAVNKLRKHENE--EVKKLAKKLIKKW 47

Mediator is a large complex of up to 33 proteins that is conserved from plants to fungi to humans - the number and representation of individual subunits varying with species {1-2]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Mediator exists in two major forms in human cells: a smaller form that interacts strongly with pol II and activates transcription, and a large form that does not interact strongly with pol II and does not directly activate transcription. Notably, the 'small' and 'large' Mediator complexes differ in their subunit composition: the Med26 subunit preferentially associates with the small, active complex, whereas cdk8, cyclin C, Med12 and Med13 associate with the large Mediator complex. This family includesthe C terminal region of a number of eukaryotic hypothetical proteins which are homologous to the Saccharomyces cerevisiae protein IWS1. IWS1 is known to be an Pol II transcription elongation factor and interacts with Spt6 and Spt5. Length = 51

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	393
KOG1793	417	consensus Uncharacterized conserved protein [Funct	100.0
COG5139	397	Uncharacterized conserved protein [Function unknow	100.0
PF08711	53	Med26: TFIIS helical bundle-like domain; InterPro:	99.02
cd00183	76	TFIIS_I N-terminal domain (domain I) of transcript	98.37
smart00509	75	TFS2N Domain in the N-terminus of transcription el	97.93
TIGR01385	299	TFSII transcription elongation factor S-II. This m	96.93
PLN02976	1713	amine oxidase	95.44
KOG1105	296	consensus Transcription elongation factor TFIIS/Co	95.42

>KOG1793 consensus Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=1.1e-50  Score=403.72  Aligned_cols=215  Identities=44%  Similarity=0.666  Sum_probs=191.8

Q ss_pred             HHHHHHHhcCCCCCCCc---hhhcccCccCC-----CCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCchHHHHHHhhc
Q 016190          172 MLNEMWNAVAPTGDSED---DQEGVRTLDDD-----NFIDDSGVDPSDRYGSDSEPRFAHDAPQAEEGDEDEEIKELFKM  243 (393)
Q Consensus       172 ~~~e~~~~~~~~~ds~~---~~e~~rt~~Dd-----~fiD~~g~d~~d~~g~d~e~~~~~d~p~aee~E~Ddei~~llk~  243 (393)
                      ...++|+.+.  .+-+.   ++.+.++..+.     +|+.++|.++-+-++.+.......+.+++...|...++.++|+|
T Consensus        65 ~~~~~~~~~~--~~~~r~~Kd~k~~~s~~~~e~~~~d~~~e~~~~~~e~~~~d~~d~~~~r~~~~~~~ed~~e~~~~~k~  142 (417)
T KOG1793|consen   65 PADEDENSNL--EDRKRERKDEKGLDSDGDNEKEHEDESQETGQEFPESQDDDFGDTGGRRPKLKAKLEDILEKKAVRKM  142 (417)
T ss_pred             ccchhhcccc--cchhhhhccccccccccccchhhhHhhhccccccccccccccccccccchhhHhhhhhHHHHHHHHhh
Confidence            6677887776  33333   33445554444     49999998877666665556567777888888999999999999


Q ss_pred             cccccccCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCChHHHHHhhhHHHHHHHhhHHHHHHHHhhhhHHHHHHhhc
Q 016190          244 GKKRKKNEKSPAEIA-LLVENVMAELEVTAEEDAELNRQGKPAINKLKKLSLLTEVLSKKQLQQEFLDHGVLTLLKNWLE  322 (393)
Q Consensus       244 ~KkKKk~~~s~~Ei~-~iv~~Li~~M~~AAeeD~eank~gkPAl~KLkmLpeV~~~L~K~~Lq~~fLD~GiL~vLk~WLe  322 (393)
                      +++++++...+.+|. .+|..|+.+|..||+.|+++|.+++|||+||+|||.|.++|.|++||.+|||||||+.|+.||+
T Consensus       143 r~kk~~~d~~~~~I~d~~v~~l~~~m~~aa~~D~~~N~e~kPA~~Klk~Lp~v~~vL~k~~L~et~LDngvL~~lk~WLe  222 (417)
T KOG1793|consen  143 RTKKRKNDDGPEEILDDEVSRLMERMEDAAEKDRELNREGKPATQKLKLLPLVVAVLSKKALQETFLDNGVLDSLKEWLE  222 (417)
T ss_pred             hhhhccccCchHHHHHHHHHHHHHHHHHHHHHHHhhccccCchHHHHhccHHHHHHHhhhhHHHHHHhhhHHHHHHHHhc
Confidence            888899999999999 8999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCCCHHHHHHHHHHHhcCCCCccccchHHHHhhcCcchhhHhhhcCchhcHHHHHHHHHHHHhhcC
Q 016190          323 PLPDGSLPNINIRAAILKILTEFPIDLEQFDRREQLKKSGLGKVIMFLSKSDEETTSNRKLAKDLVDKWVM  393 (393)
Q Consensus       323 PLPDgSLPnl~IRt~LLkiL~~LPId~e~~d~rE~LK~SGLGKVVmfL~K~p~ET~eNKrlA~~LI~kWSR  393 (393)
                      ||||||||||+||.+||+||..|||.+     +|||++||||||||||++||+||++||+||..||++|+|
T Consensus       223 PLPD~SLPal~Ir~~ll~iL~dlpi~~-----~E~Lk~SGlGkvVmflsks~ket~~nkrlA~kLI~eWsR  288 (417)
T KOG1793|consen  223 PLPDGSLPALNIRKSLLDILNDLPIDK-----REHLKESGLGKVVMFLSKSPKETKENKRLANKLINEWSR  288 (417)
T ss_pred             cCCCCCCcchHHHHHHHHHHhcCCcch-----HHHHHhcCCCeEEEEEecCCccchHHHHHHHHHHHHhhc
Confidence            999999999999999999999999976     589999999999999999999999999999999999998

>COG5139 Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=7.8e-39  Score=311.11  Aligned_cols=167  Identities=32%  Similarity=0.571  Sum_probs=151.7

Q ss_pred             CCCCCccccCCCchHHHHHHhhccccc---cccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHhhhHHHHH
Q 016190          221 FAHDAPQAEEGDEDEEIKELFKMGKKR---KKNEKSPAEIALLVENVMAELEVTAEEDAELNRQGKPAINKLKKLSLLTE  297 (393)
Q Consensus       221 ~~~d~p~aee~E~Ddei~~llk~~KkK---Kk~~~s~~Ei~~iv~~Li~~M~~AAeeD~eank~gkPAl~KLkmLpeV~~  297 (393)
                      +..+++.|...|.++.+.++|+..+..   ++....++=+..++..|..+|..||..|+..|.++.|||.||+|||+|..
T Consensus       115 ~~~d~t~a~~~El~~~~dr~lK~p~~sr~rr~eD~leq~~de~~lrLk~~M~~aa~~D~~~n~e~~pAt~Kik~lp~V~~  194 (397)
T COG5139         115 SGQDFTEAQSGELGDTGDRQLKAPAASRARRKEDLLEQTVDEISLRLKKRMQDAAKKDNANNLEGRPATGKIKNLPEVSD  194 (397)
T ss_pred             ccCCCChhhhhhhhhhhhhhhccchhhhhhccccchHHHHHHHHHHHHHHHHHHHHhhhhhhhccCcchhhhhccHHHHH
Confidence            344567888999999999999833332   23334455567789999999999999999999999999999999999999


Q ss_pred             HHhhHHHHHHHHhhhhHHHHHHhhccCCCCCCCCHHHHHHHHHHHhcCCCCccccchHHHHhhcCcchhhHhhhcCchhc
Q 016190          298 VLSKKQLQQEFLDHGVLTLLKNWLEPLPDGSLPNINIRAAILKILTEFPIDLEQFDRREQLKKSGLGKVIMFLSKSDEET  377 (393)
Q Consensus       298 ~L~K~~Lq~~fLD~GiL~vLk~WLePLPDgSLPnl~IRt~LLkiL~~LPId~e~~d~rE~LK~SGLGKVVmfL~K~p~ET  377 (393)
                      +|.|.+||.+|||+|||+.|+.||+||||+|||||+||+.||.+|..|||.+      |||++||||+||+||+.+|++.
T Consensus       195 VL~k~~L~dtiLDnniLdsVr~WLEPLPD~SlP~~~IqksL~dvL~~lpI~t------EHL~eSgvGrIV~FYtiskk~e  268 (397)
T COG5139         195 VLMKKALQDTILDNNILDSVRGWLEPLPDKSLPNIKIQKSLLDVLKTLPIHT------EHLVESGVGRIVYFYTISKKEE  268 (397)
T ss_pred             HHHHHHHHHHHhhcchHHHHHhhhccCCCCCCcchHHHHHHHHHHhhCCchH------HHhhhcCCceEEEEEecCCccc
Confidence            9999999999999999999999999999999999999999999999999987      6999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhcC
Q 016190          378 TSNRKLAKDLVDKWVM  393 (393)
Q Consensus       378 ~eNKrlA~~LI~kWSR  393 (393)
                      ++++++|..||++|+|
T Consensus       269 ~~v~r~A~~LV~eWtr  284 (397)
T COG5139         269 KEVRRSAKALVQEWTR  284 (397)
T ss_pred             HHHHHHHHHHHHHhhc
Confidence            9999999999999997

>PF08711 Med26: TFIIS helical bundle-like domain; InterPro: IPR017923 Transcription factor IIS (TFIIS) is a transcription elongation factor that increases the overall transcription rate of RNA polymerase II by reactivating transcription elongation complexes that have arrested transcription

Probab=99.02  E-value=2.1e-10  Score=85.20  Aligned_cols=50  Identities=46%  Similarity=0.727  Sum_probs=44.8

Q ss_pred             HHHHHHhcCCCCccccchHHHHhhcCcchhhHhhhcCchhcHHHHHHHHHHHHhhcC
Q 016190          337 AILKILTEFPIDLEQFDRREQLKKSGLGKVIMFLSKSDEETTSNRKLAKDLVDKWVM  393 (393)
Q Consensus       337 ~LLkiL~~LPId~e~~d~rE~LK~SGLGKVVmfL~K~p~ET~eNKrlA~~LI~kWSR  393 (393)
                      .+|+.|..|||+      .++|++|+||++|.+|+|| .++++|+++|+.||.+|.+
T Consensus         1 ~iL~~L~~l~it------~~~L~~T~IGk~V~~l~k~-~~~~~i~~~A~~Li~~Wk~   50 (53)
T PF08711_consen    1 EILKVLEKLPIT------VELLKSTGIGKAVNKLRKH-SENPEIRKLAKELIKKWKR   50 (53)
T ss_dssp             HHHHHHHCSS-S------HHHHHHHSHHHHHHHHHHC-TS-HHHHHHHHHHHHHHHH
T ss_pred             CHHHHhhcCCCC------HHHHHhCChhHHHHHHHcC-CCCHHHHHHHHHHHHHHhH
Confidence            489999999985      4799999999999999999 9999999999999999974

The three structural domains of TFIIS are conserved from yeast to human. The 80 or so N-terminal residues form a protein interaction domain containing a conserved motif, which has been called the LW motif because of the invariant leucine and tryptophan residues it contains. Although the N-terminal domain is not needed for transcriptional activity, a similar sequence has been identified in other transcription factors and proteins that are predominantly nuclear localized [, ]: MED26 (also known as CRSP70 and ARC70), a subunit of the Mediator complex, which is required for the activity of the enhancer-binding protein Sp1. Elongin A, a subunit of a transcription elongation factor previously known as SIII. It increases the rate of transcription by suppressing transient pausing of the elongation complex. PPP1R10, a nuclear regulatory subunit of protein phosphatase 1 that was previously known as p99, FB19 or PNUTS. PIBP, a small hypothetical protein that could be a phosphoinositide binding protein. IWS1, which is thought to function in both transcription initiation and elongation. The TFIIS N-terminal domain is a compact four-helix bundle. The hydrophobic core residues of helices 2, 3, and 4 are well conserved among TFIIS domains, although helix 1 is less conserved []. ; GO: 0003677 DNA binding, 0006351 transcription, DNA-dependent, 0005634 nucleus; PDB: 1EO0_A 3OAK_A 3NFQ_B 3O8Z_A 1WJT_A 2XPL_A 2XPO_A 2XPP_A 2XPN_A.

>cd00183 TFIIS_I N-terminal domain (domain I) of transcription elongation factor S-II (TFIIS); similar to a domain found in elongin A and CRSP70; likely to be involved in transcription; domain I from TFIIS interacts with RNA polymerase II holoenzyme

Probab=98.37  E-value=1.3e-06  Score=69.89  Aligned_cols=55  Identities=31%  Similarity=0.561  Sum_probs=51.2

Q ss_pred             CCHHHHHHHHHHHhcCCCCccccchHHHHhhcCcchhhHhhhcCchhcHHHHHHHHHHHHhhc
Q 016190          330 PNINIRAAILKILTEFPIDLEQFDRREQLKKSGLGKVIMFLSKSDEETTSNRKLAKDLVDKWV  392 (393)
Q Consensus       330 Pnl~IRt~LLkiL~~LPId~e~~d~rE~LK~SGLGKVVmfL~K~p~ET~eNKrlA~~LI~kWS  392 (393)
                      |+...--.+|..|..|||+.      +.|+.++||++|.+|++|+.  +.++.+|+.||.+|.
T Consensus        18 ~~~~~~~~~L~~L~~~~it~------~~L~~T~iG~~V~~Lrkh~~--~~i~~~A~~Lv~~Wk   72 (76)
T cd00183          18 EEVSRLLDLLRLLKKLPLTV------EILKETRIGKKVNSLRKHSN--EKIRKLAKALIKSWK   72 (76)
T ss_pred             CCHHHHHHHHHHHhcCCCCH------HHHHHCCHHHHHHHHHcCCc--HHHHHHHHHHHHHHH
Confidence            78888889999999999854      79999999999999999987  999999999999996

>smart00509 TFS2N Domain in the N-terminus of transcription elongation factor S-II (and elsewhere)

Probab=97.93  E-value=1.4e-05  Score=64.18  Aligned_cols=54  Identities=33%  Similarity=0.511  Sum_probs=45.6

Q ss_pred             CHHHHHHHHHHHhcCCCCccccchHHHHhhcCcchhhHhhhcCchhcHHHHHHHHHHHHhhc
Q 016190          331 NINIRAAILKILTEFPIDLEQFDRREQLKKSGLGKVIMFLSKSDEETTSNRKLAKDLVDKWV  392 (393)
Q Consensus       331 nl~IRt~LLkiL~~LPId~e~~d~rE~LK~SGLGKVVmfL~K~p~ET~eNKrlA~~LI~kWS  392 (393)
                      +..-=-.+|+.|..|||+      .++|+.+.||++|..|++|+  .++++.+|..||..|.
T Consensus        17 ~~~~~l~~L~~L~~~~~t------~~~L~~T~iG~~v~~Lrkh~--~~~I~~~A~~Li~~WK   70 (75)
T smart00509       17 EVSRCLDILKKLKKLPIT------VDLLEETRIGKKVNGLRKHK--NEEIRKLAKKLIKSWK   70 (75)
T ss_pred             CHHHHHHHHHHHhcCCCC------HHHHHHCcHHHHHHHHHcCC--cHHHHHHHHHHHHHHH
Confidence            333334678888888985      47999999999999999996  5999999999999995

>TIGR01385 TFSII transcription elongation factor S-II

Probab=96.93  E-value=0.001  Score=66.16  Aligned_cols=48  Identities=33%  Similarity=0.521  Sum_probs=42.1

Q ss_pred             HHHHHHhcCCCCccccchHHHHhhcCcchhhHhhhcCchhcHHHHHHHHHHHHhhc
Q 016190          337 AILKILTEFPIDLEQFDRREQLKKSGLGKVIMFLSKSDEETTSNRKLAKDLVDKWV  392 (393)
Q Consensus       337 ~LLkiL~~LPId~e~~d~rE~LK~SGLGKVVmfL~K~p~ET~eNKrlA~~LI~kWS  392 (393)
                      .+|+.|..|||.      .+.|+.+.||++|..|+||+.  ++|+.+|+.||..|.
T Consensus        25 ~~L~~L~~~~~t------~~lL~~T~IG~~Vn~lrkh~~--~~I~~lAk~li~~WK   72 (299)
T TIGR01385        25 DILHQLKEFPPT------EELLQETKVGVKVNKLRKHPN--EDISKLAKKIIKSWK   72 (299)
T ss_pred             HHHHHHhcCCCc------HHHHhhCchhHHHHHHHcCCc--HHHHHHHHHHHHHHH
Confidence            467888888885      479999999999999999975  679999999999995

This model represents eukaryotic transcription elongation factor S-II. This protein allows stalled RNA transcription complexes to perform a cleavage of the nascent RNA and restart at the newly generated 3-prime end.

>PLN02976 amine oxidase

Probab=95.44  E-value=0.051  Score=64.29  Aligned_cols=81  Identities=22%  Similarity=0.323  Sum_probs=62.3

Q ss_pred             hHHHHHHHHhhhhHHHHHHhhc--cCCCCCCCCHHHHHHHHHHHhcCCCCccccchHHHHhhcCcchhhHhhhcCchhcH
Q 016190          301 KKQLQQEFLDHGVLTLLKNWLE--PLPDGSLPNINIRAAILKILTEFPIDLEQFDRREQLKKSGLGKVIMFLSKSDEETT  378 (393)
Q Consensus       301 K~~Lq~~fLD~GiL~vLk~WLe--PLPDgSLPnl~IRt~LLkiL~~LPId~e~~d~rE~LK~SGLGKVVmfL~K~p~ET~  378 (393)
                      -.+|..+-+....|.+|..||.  --++|    -++-+.++.+|.-+|.+.      -.|+.|||||+|--=. |--..+
T Consensus      1271 ~~~~~~~a~~~~gl~~l~~w~~~~~~~~~----~~l~~~~~~ll~~~~~d~------~a~r~sg~~~~~k~~~-~~h~~~ 1339 (1713)
T PLN02976       1271 VETLKSFAGTKEGLATLNSWILDSMGKDG----TQLLRHCVRLLVLVSTDL------LAVRLSGIGKTVKEKV-CVHTSR 1339 (1713)
T ss_pred             HHHHHHHhcccchHHHHHHHHHHHhcccH----HHHHHHHHHHHhhcchhH------HHHHhccchHHHHhhh-hhcccH
Confidence            3455566666788999999998  33555    346678889998888765      4899999999984322 445678


Q ss_pred             HHHHHHHHHHHhhc
Q 016190          379 SNRKLAKDLVDKWV  392 (393)
Q Consensus       379 eNKrlA~~LI~kWS  392 (393)
                      +||.||.+|++.|+
T Consensus      1340 ~~r~~a~~~~~~w~ 1353 (1713)
T PLN02976       1340 DIRAIASQLVSVWL 1353 (1713)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999999996

>KOG1105 consensus Transcription elongation factor TFIIS/Cofactor of enhancer-binding protein Sp1 [Transcription]

Probab=95.42  E-value=0.029  Score=56.19  Aligned_cols=69  Identities=30%  Similarity=0.440  Sum_probs=55.7

Q ss_pred             hHHHHHHhhccCCCCCCCCHHHHHHHHHHHhcCCCCccccchHHHHhhcCcchhhH-hhhcCchhcHHHHHHHHHHHHhh
Q 016190          313 VLTLLKNWLEPLPDGSLPNINIRAAILKILTEFPIDLEQFDRREQLKKSGLGKVIM-FLSKSDEETTSNRKLAKDLVDKW  391 (393)
Q Consensus       313 iL~vLk~WLePLPDgSLPnl~IRt~LLkiL~~LPId~e~~d~rE~LK~SGLGKVVm-fL~K~p~ET~eNKrlA~~LI~kW  391 (393)
                      ++.+.+. |+-++..  +|+.---.+|+-|.++||.      .++|..+.||..|. ++.+|+.+  +++.+|+.||..|
T Consensus         6 ~~r~ak~-l~~~~~~--~n~~~~ld~l~~L~~~pvt------~ell~~Tr~g~~vn~~~Kk~~n~--ev~~~ak~Lik~W   74 (296)
T KOG1105|consen    6 ALRAAKA-LEKDKQS--KNVEAALDLLKRLKKIPVT------LELLQETRTGMGVNEVLKKHKNE--EVRSLAKKLIKSW   74 (296)
T ss_pred             HHHHHHH-HHhhccc--ccHHHHHHHHHHHHhcccH------HHHHHHhhHHHHHHHHHHhCCCH--HHHHHHHHHHHHH
Confidence            3444444 6666665  8887777889999999984      47999999999999 88888875  7889999999999


Q ss_pred             c
Q 016190          392 V  392 (393)
Q Consensus       392 S  392 (393)
                      .
T Consensus        75 k   75 (296)
T KOG1105|consen   75 K   75 (296)
T ss_pred             H
Confidence            5

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	393
2xpl_A	148	Crystal Structure Of Iws1(Spn1) Conserved Domain Fr		3e-18
2xpn_A	145	Crystal Structure Of A Spt6-Iws1(Spn1) Complex From		3e-18
3oak_A	151	Crystal Structure Of A Spn1 (Iws1)-Spt6 Complex Len		4e-15
3o8z_A	152	Crystal Structure Of Spn1 (Iws1) Core Domain Length		4e-15
3nfq_A	170	Crystal Structure Of The Conserved Central Domain O		5e-15

>pdb|2XPL|A Chain A, Crystal Structure Of Iws1(Spn1) Conserved Domain From Encephalitozoon Cuniculi Length = 148

Iteration: 1
 Score = 89.4 bits (220), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 46/113 (40%), Positives = 68/113 (60%), Gaps = 6/113 (5%)
Query: 279 NRQGKPAINKLKKLSLLTEVLSKKQLQQEFLDHGVLTLLKNWLEPLPDGSLPNINIRAAI 338
           N +G+PA  K++ +  ++++L  K LQ+  LD G+L  +K WLEPLPD S+PNI IR  +
Sbjct: 31  NLEGRPATGKIENVEEISDILMSKALQESLLDEGILDEIKGWLEPLPDKSMPNIKIRKRL 90
Query: 339 LKILTEFPIDLEQFDRREQLKKSGLGKVIMFLSKSDEETTSNRKLAKDLVDKW 391
           L +L    I       +E L  SG+GK++ F S + +E+   R  AK LV KW
Sbjct: 91  LDVLKTMKI------HKEHLVTSGVGKIVYFYSINPKESKEVRASAKALVQKW 137

>pdb|2XPN|A Chain A, Crystal Structure Of A Spt6-Iws1(Spn1) Complex From Encephalitozoon Cuniculi, Form I Length = 145

Iteration: 1
 Score = 89.4 bits (220), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 46/113 (40%), Positives = 68/113 (60%), Gaps = 6/113 (5%)
Query: 279 NRQGKPAINKLKKLSLLTEVLSKKQLQQEFLDHGVLTLLKNWLEPLPDGSLPNINIRAAI 338
           N +G+PA  K++ +  ++++L  K LQ+  LD G+L  +K WLEPLPD S+PNI IR  +
Sbjct: 28  NLEGRPATGKIENVEEISDILMSKALQESLLDEGILDEIKGWLEPLPDKSMPNIKIRKRL 87
Query: 339 LKILTEFPIDLEQFDRREQLKKSGLGKVIMFLSKSDEETTSNRKLAKDLVDKW 391
           L +L    I       +E L  SG+GK++ F S + +E+   R  AK LV KW
Sbjct: 88  LDVLKTMKI------HKEHLVTSGVGKIVYFYSINPKESKEVRASAKALVQKW 134

>pdb|3OAK|A Chain A, Crystal Structure Of A Spn1 (Iws1)-Spt6 Complex Length = 151

Iteration: 1
 Score = 79.0 bits (193), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 46/130 (35%), Positives = 74/130 (56%), Gaps = 7/130 (5%)
Query: 263 NVMAELEV-TAEEDAELNRQGKPAINKLKKLSLLTEVLSKKQLQQEFLDHGVLTLLKNWL 321
           N+ A+L++ T  +  E       A+ K+K L  +  VLSK  L    LD+ +L  ++ WL
Sbjct: 25  NIAAQLDIDTLNKRIETGDTSLIAMQKVKLLPKVVSVLSKANLADTILDNNLLQSVRIWL 84
Query: 322 EPLPDGSLPNINIRAAILKILTEFPIDLEQFDRREQLKKSGLGKVIMFLSKSDEETTSNR 381
           EPLPDGSLP+  I+ ++   L + P+      + E LK+SGLG+V++F +KS        
Sbjct: 85  EPLPDGSLPSFEIQKSLFAALNDLPV------KTEHLKESGLGRVVIFYTKSKRVEAQLA 138
Query: 382 KLAKDLVDKW 391
           +LA+ L+ +W
Sbjct: 139 RLAEKLIAEW 148

>pdb|3O8Z|A Chain A, Crystal Structure Of Spn1 (Iws1) Core Domain Length = 152

Iteration: 1
 Score = 79.0 bits (193), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 46/130 (35%), Positives = 74/130 (56%), Gaps = 7/130 (5%)
Query: 263 NVMAELEV-TAEEDAELNRQGKPAINKLKKLSLLTEVLSKKQLQQEFLDHGVLTLLKNWL 321
           N+ A+L++ T  +  E       A+ K+K L  +  VLSK  L    LD+ +L  ++ WL
Sbjct: 23  NIAAQLDIDTLNKRIETGDTSLIAMQKVKLLPKVVSVLSKANLADTILDNNLLQSVRIWL 82
Query: 322 EPLPDGSLPNINIRAAILKILTEFPIDLEQFDRREQLKKSGLGKVIMFLSKSDEETTSNR 381
           EPLPDGSLP+  I+ ++   L + P+      + E LK+SGLG+V++F +KS        
Sbjct: 83  EPLPDGSLPSFEIQKSLFAALNDLPV------KTEHLKESGLGRVVIFYTKSKRVEAQLA 136
Query: 382 KLAKDLVDKW 391
           +LA+ L+ +W
Sbjct: 137 RLAEKLIAEW 146

>pdb|3NFQ|A Chain A, Crystal Structure Of The Conserved Central Domain Of Yeast Spn1IWS1 Length = 170

Iteration: 1
 Score = 78.6 bits (192), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 46/130 (35%), Positives = 73/130 (56%), Gaps = 7/130 (5%)
Query: 263 NVMAELEV-TAEEDAELNRQGKPAINKLKKLSLLTEVLSKKQLQQEFLDHGVLTLLKNWL 321
           N+ A+L++ T  +  E       A  K+K L  +  VLSK  L    LD+ +L  ++ WL
Sbjct: 26  NIAAQLDIDTLNKRIETGDTSLIAXQKVKLLPKVVSVLSKANLADTILDNNLLQSVRIWL 85
Query: 322 EPLPDGSLPNINIRAAILKILTEFPIDLEQFDRREQLKKSGLGKVIMFLSKSDEETTSNR 381
           EPLPDGSLP+  I+ ++   L + P+      + E LK+SGLG+V++F +KS        
Sbjct: 86  EPLPDGSLPSFEIQKSLFAALNDLPV------KTEHLKESGLGRVVIFYTKSKRVEAQLA 139
Query: 382 KLAKDLVDKW 391
           +LA+ L+ +W
Sbjct: 140 RLAEKLIAEW 149

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	393
2xpp_A	145	IWS1, ECU08_0440; transcription, elongation, histo	2e-39
3nfq_A	170	Transcription factor IWS1; SPN1, RNA polymerase II	3e-35
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-08

>2xpp_A IWS1, ECU08_0440; transcription, elongation, histone chaperone, RNA polymerase mRNA export; 1.74A {Encephalitozoon cuniculi} PDB: 2xpo_A 2xpn_A 2xpl_A Length = 145

 Score =  137 bits (345), Expect = 2e-39
 Identities = 48/139 (34%), Positives = 78/139 (56%), Gaps = 6/139 (4%)

Query: 253 SPAEIALLVENVMAELEVTAEEDAELNRQGKPAINKLKKLSLLTEVLSKKQLQQEFLDHG 312
            P  +  +  ++   ++   ++D   N +G+PA  K++ +  ++++L  K LQ+  LD G
Sbjct: 2   DPGTVLEISRSLKKRMQDILKKDNANNLEGRPATGKIENVEEISDILMSKALQESLLDEG 61

Query: 313 VLTLLKNWLEPLPDGSLPNINIRAAILKILTEFPIDLEQFDRREQLKKSGLGKVIMFLSK 372
           +L  +K WLEPLPD S+PNI IR  +L +L    I       +E L  SG+GK++ F S 
Sbjct: 62  ILDEIKGWLEPLPDKSMPNIKIRKRLLDVLKTMKIH------KEHLVTSGVGKIVYFYSI 115

Query: 373 SDEETTSNRKLAKDLVDKW 391
           + +E+   R  AK LV KW
Sbjct: 116 NPKESKEVRASAKALVQKW 134

>3nfq_A Transcription factor IWS1; SPN1, RNA polymerase II; 1.85A {Saccharomyces cerevisiae} PDB: 3o8z_A 3oak_A Length = 170

 Score =  126 bits (318), Expect = 3e-35
 Identities = 45/154 (29%), Positives = 77/154 (50%), Gaps = 13/154 (8%)

Query: 245 KKRKKNEKSPAEIALLVENVMAELEVTAEEDAELNR-------QGKPAINKLKKLSLLTE 297
           + R+  +     +   +  +  E+ + A+ D +              A+ K+K L  +  
Sbjct: 2   RTRRDEDDLEQYLDEKILRLKDEMNIAAQLDIDTLNKRIETGDTSLIAMQKVKLLPKVVS 61

Query: 298 VLSKKQLQQEFLDHGVLTLLKNWLEPLPDGSLPNINIRAAILKILTEFPIDLEQFDRREQ 357
           VLSK  L    LD+ +L  ++ WLEPLPDGSLP+  I+ ++   L + P+        E 
Sbjct: 62  VLSKANLADTILDNNLLQSVRIWLEPLPDGSLPSFEIQKSLFAALNDLPVK------TEH 115

Query: 358 LKKSGLGKVIMFLSKSDEETTSNRKLAKDLVDKW 391
           LK+SGLG+V++F +KS        +LA+ L+ +W
Sbjct: 116 LKESGLGRVVIFYTKSKRVEAQLARLAEKLIAEW 149

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 62.6 bits (151), Expect = 1e-10
 Identities = 75/436 (17%), Positives = 124/436 (28%), Gaps = 127/436 (29%)

Query: 17  MDYDDIRSDPEQSPEHQQHQNDNVLDDFDDDDVGDGGVSPARERSQTPVYNNNE-----K 71
           MD++             Q+Q  ++L  F+D  V +      ++     + +  E      
Sbjct: 7   MDFE---------TGEHQYQYKDILSVFEDAFVDNFDCKDVQD-MPKSILSKEEIDHIIM 56

Query: 72  SSKPRKR-------LVKKGAKESGSTPSLIDEREDEYD-----DEGEDNIIGDDFEREIE 119
           S             L+ K   E      + +     Y       + E           IE
Sbjct: 57  SKDAVSGTLRLFWTLLSKQ--EEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIE 114

Query: 120 ERKRKKWGKEGGKDHNTK------------KRLKSGGDKKFSSSGGKSSGFKSSRAGSIR 167
           +R R     +    +N                L+    K     G   SG K+  A  + 
Sbjct: 115 QRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPA--KNVLIDGVLGSG-KTWVALDVC 171

Query: 168 DNDKMLNEM-----WNAVAPTGDSEDDQEGVRTLDDDNFIDDSGVDPSDRYGSDSEPRFA 222
            + K+  +M     W  +      E   E ++ L     ID +    SD   S +     
Sbjct: 172 LSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQ--IDPNWTSRSDH--SSNIKLRI 227

Query: 223 HDAPQAEEGDEDEEIKELFKMGKKRKKNEKSPAEIALLV-ENVMAELEVTAEEDAELNRQ 281
           H            E++ L K   K  +N        LLV  NV         ++A+    
Sbjct: 228 HSI--------QAELRRLLK--SKPYEN-------CLLVLLNV---------QNAKA--- 258

Query: 282 GKPAINKLK---KLSLLT-------EVLSKKQLQQEFLDHG--------VLTLLKNWLEP 323
                N      K+ LLT       + LS        LDH         V +LL  +L+ 
Sbjct: 259 ----WNAFNLSCKI-LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLD- 312

Query: 324 LPDGSLPN---------INIRAAILKILTEFPIDLEQFDRREQLKKSGLGKVIMFLSKSD 374
                LP          ++I A  ++   +           +  K     K+   +  S 
Sbjct: 313 CRPQDLPREVLTTNPRRLSIIAESIR---DGL------ATWDNWKHVNCDKLTTIIESSL 363

Query: 375 E--ETTSNRKLAKDLV 388
              E    RK+   L 
Sbjct: 364 NVLEPAEYRKMFDRLS 379

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 56.0 bits (134), Expect = 1e-08
 Identities = 57/420 (13%), Positives = 114/420 (27%), Gaps = 108/420 (25%)

Query: 6   DPYRDEDEEPLMDYDDIRSDPEQSPEHQQHQNDNVLDDFDDDDVGDGGVSPARERSQTPV 65
            P + E  +P M             +  +  NDN +  F   +V       +R +    +
Sbjct: 96  SPIKTEQRQPSMMTRMYIE------QRDRLYNDNQV--FAKYNV-------SRLQPYLKL 140

Query: 66  YNNNEKSSKPRKRLVKKGAKESGSTPSLIDE--REDEYDDEGEDNI----IGDDFERE-- 117
                   +P K ++  G   SG T  +  +     +   + +  I    + +    E  
Sbjct: 141 -RQALLELRPAKNVLIDGVLGSGKT-WVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETV 198

Query: 118 IEE------RKRKKWGKEGGKDHNTKKRLKSGGDKK---FSSSGGKSSGFKSSRAGSIRD 168
           +E       +    W        N K R+ S   +      S   +           +  
Sbjct: 199 LEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYE-------NCLLVLL 251

Query: 169 N--DKMLNEMWNAVAPTGDSEDDQEGVRTL---DDDNFIDDSGVDPSDRYGSDSEPRFAH 223
           N  +    + WNA              + L         D      +     D       
Sbjct: 252 NVQNA---KAWNAFNL---------SCKILLTTRFKQVTDFLSAATTTHISLDHH----- 294

Query: 224 DAPQAEEGDEDEEIKELFKMGKK-RKKNEKSPAE---IALLVENVMAELEVTAEEDAELN 279
                      +E+K L    K    + +  P E         +++AE     +  A  +
Sbjct: 295 -----SMTLTPDEVKSLL--LKYLDCRPQDLPREVLTTNPRRLSIIAES--IRDGLATWD 345

Query: 280 RQGKPAINKLK---KLSLLTEVLSKKQLQQEFLDHGVLTLLKNWLEPLPDGSLPNINIRA 336
                  +KL    + SL   VL   + ++ F    V           P     + +I  
Sbjct: 346 NWKHVNCDKLTTIIESSL--NVLEPAEYRKMFDRLSVF----------PP----SAHIPT 389

Query: 337 AILKIL-----TEFPID-LEQFDRREQLKKSGLGKVI-------MFLSKSDEETTSNRKL 383
            +L ++         +  + +  +   ++K      I           K + E   +R +
Sbjct: 390 ILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSI 449

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	393
2xpp_A	145	IWS1, ECU08_0440; transcription, elongation, histo	100.0
3nfq_A	170	Transcription factor IWS1; SPN1, RNA polymerase II	100.0
1wjt_A	103	Transcription elongation factor S-II protein 3; fo	97.78
1pqv_S	309	STP-alpha, transcription elongation factor S-II, D	97.29

>2xpp_A IWS1, ECU08_0440; transcription, elongation, histone chaperone, RNA polymerase mRNA export; 1.74A {Encephalitozoon cuniculi} PDB: 2xpo_A 2xpn_A 2xpl_A

Probab=100.00  E-value=1.3e-49  Score=351.32  Aligned_cols=136  Identities=35%  Similarity=0.645  Sum_probs=131.2

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHhhhHHHHHHHhhHHHHHHHHhhhhHHHHHHhhccCCCCCCCC
Q 016190          252 KSPAEIALLVENVMAELEVTAEEDAELNRQGKPAINKLKKLSLLTEVLSKKQLQQEFLDHGVLTLLKNWLEPLPDGSLPN  331 (393)
Q Consensus       252 ~s~~Ei~~iv~~Li~~M~~AAeeD~eank~gkPAl~KLkmLpeV~~~L~K~~Lq~~fLD~GiL~vLk~WLePLPDgSLPn  331 (393)
                      ++++||.++|.+|+.+|..||++|+++|++++|||+||+||++|+.+|+|.+||.+||++|+|++|+.||+|||||||||
T Consensus         1 ~~~~e~~~~~~~l~~~M~~Aa~~D~~a~~~~~PA~~KlklL~~V~~~l~k~~l~~~~ld~giL~~l~~WL~PLpDgsLP~   80 (145)
T 2xpp_A            1 MDPGTVLEISRSLKKRMQDILKKDNANNLEGRPATGKIENVEEISDILMSKALQESLLDEGILDEIKGWLEPLPDKSMPN   80 (145)
T ss_dssp             ---CHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHTCTTTHHHHHHTTHHHHHHHHHSCCTTSCCCC
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHhhHHHHHHHHhhHHHHHHHHHcCHHHHHHHHhCcCCCCCCCC
Confidence            47889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCCCccccchHHHHhhcCcchhhHhhhcCchhcHHHHHHHHHHHHhhcC
Q 016190          332 INIRAAILKILTEFPIDLEQFDRREQLKKSGLGKVIMFLSKSDEETTSNRKLAKDLVDKWVM  393 (393)
Q Consensus       332 l~IRt~LLkiL~~LPId~e~~d~rE~LK~SGLGKVVmfL~K~p~ET~eNKrlA~~LI~kWSR  393 (393)
                      ++||+.||++|.+|||++      +||++||||||||||++||+||++||++|++||++|||
T Consensus        81 ~~Ir~~lL~~L~~lPI~~------e~Lk~SglGkvv~~l~k~~~et~~nk~la~~Li~~WsR  136 (145)
T 2xpp_A           81 IKIRKRLLDVLKTMKIHK------EHLVTSGVGKIVYFYSINPKESKEVRASAKALVQKWTN  136 (145)
T ss_dssp             HHHHHHHHHHHHTSCCCH------HHHHHHCHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCCH------HHhhcCCCCcchhhhhcCCccCHHHHHHHHHHHHHHHH
Confidence            999999999999999964      79999999999999999999999999999999999997

>3nfq_A Transcription factor IWS1; SPN1, RNA polymerase II; 1.85A {Saccharomyces cerevisiae} PDB: 3o8z_A 3oak_A

Probab=100.00  E-value=1.1e-46  Score=340.42  Aligned_cols=142  Identities=32%  Similarity=0.614  Sum_probs=128.2

Q ss_pred             cccccCCCH-HHHHHHHHHHHHHHHHHHHHHHHH-Hh------cCChHHHHHhhhHHHHHHHhhHHHHHHHHhhhhHHHH
Q 016190          246 KRKKNEKSP-AEIALLVENVMAELEVTAEEDAEL-NR------QGKPAINKLKKLSLLTEVLSKKQLQQEFLDHGVLTLL  317 (393)
Q Consensus       246 kKKk~~~s~-~Ei~~iv~~Li~~M~~AAeeD~ea-nk------~gkPAl~KLkmLpeV~~~L~K~~Lq~~fLD~GiL~vL  317 (393)
                      +||+.+.+. ...++.|.+|+.+|..||++|.++ |+      +++|||+||+|||+|+.+|+|.+||.+||++|||++|
T Consensus         2 r~~~~~~dl~~~~Dd~i~~L~~~M~~Aa~~D~~~~n~~~~~~~~~~PAl~KLkmL~~V~~~L~k~~L~~~~ld~giL~~l   81 (170)
T 3nfq_A            2 RTRRDEDDLEQYLDEKILRLKDEMNIAAQLDIDTLNKRIETGDTSLIAMQKVKLLPKVVSVLSKANLADTILDNNLLQSV   81 (170)
T ss_dssp             ------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCCCCHHHHHHHHHHHHHTCGGGHHHHHHTTHHHHH
T ss_pred             CccchhhhHHHhhhHHHHHHHHHHHHHHHHhHHHHHhhhccccccccHHHHHhhHHHHHHHHhHHHHHHHHHHcchHHHH
Confidence            345555555 455679999999999999999875 43      5799999999999999999999999999999999999


Q ss_pred             HHhhccCCCCCCCCHHHHHHHHHHHhcCCCCccccchHHHHhhcCcchhhHhhhcCchhcHHHHHHHHHHHHhhcC
Q 016190          318 KNWLEPLPDGSLPNINIRAAILKILTEFPIDLEQFDRREQLKKSGLGKVIMFLSKSDEETTSNRKLAKDLVDKWVM  393 (393)
Q Consensus       318 k~WLePLPDgSLPnl~IRt~LLkiL~~LPId~e~~d~rE~LK~SGLGKVVmfL~K~p~ET~eNKrlA~~LI~kWSR  393 (393)
                      +.||+||||||||||+||+.||++|.+|||++      +||++||||||||||++||+||++||++|.+||++|||
T Consensus        82 ~~WLePLpDgSLP~~~Ir~~lL~~L~~lPI~~------e~Lk~SglGkvV~~l~k~~~et~~nkrla~~Li~~WsR  151 (170)
T 3nfq_A           82 RIWLEPLPDGSLPSFEIQKSLFAALNDLPVKT------EHLKESGLGRVVIFYTKSKRVEAQLARLAEKLIAEWTR  151 (170)
T ss_dssp             HHHHSCCTTSCCCCHHHHHHHHHHHHTSCCCH------HHHHHHSHHHHHHHHHHCTTSCHHHHHHHHHHHHHHTC
T ss_pred             HHHhCcCCCCCCCcHHHHHHHHHHHHHCCCCH------HHHhhCCCCceeeehhcCCcccHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999964      79999999999999999999999999999999999998

>1wjt_A Transcription elongation factor S-II protein 3; four-helix bundle, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.48.3.1

Probab=97.78  E-value=1.1e-05  Score=67.47  Aligned_cols=49  Identities=22%  Similarity=0.323  Sum_probs=42.7

Q ss_pred             HHHHHHhcCCCCccccchHHHHhhcCcchhhHhhhcCchhcHHHHHHHHHHHHhhc
Q 016190          337 AILKILTEFPIDLEQFDRREQLKKSGLGKVIMFLSKSDEETTSNRKLAKDLVDKWV  392 (393)
Q Consensus       337 ~LLkiL~~LPId~e~~d~rE~LK~SGLGKVVmfL~K~p~ET~eNKrlA~~LI~kWS  392 (393)
                      .+|+.|..|||+      .+.|++++||++|..|+|| ...++++.+|+.||.+|.
T Consensus        35 ~~L~~L~~~~iT------~e~L~~T~IGk~Vn~LrKh-~~~~~V~~lAk~Lv~~WK   83 (103)
T 1wjt_A           35 DLLKKLNSCQMS------IQLLQTTRIGVAVNGVRKH-CSDKEVVSLAKVLIKNWK   83 (103)
T ss_dssp             HHHHHHHTSCCC------HHHHHHTCHHHHHHHHHHH-CCCSHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCCCC------HHHHHHcchhHHHHHHHcc-CCcHHHHHHHHHHHHHHH
Confidence            578888999985      4799999999999999998 244688999999999995

>1pqv_S STP-alpha, transcription elongation factor S-II, DNA; mRNA cleavage, proofreading, BACKTRACKING, gene expression, multiprotein complex; 3.80A {Saccharomyces cerevisiae} SCOP: i.8.1.1 PDB: 1eo0_A

Probab=97.29  E-value=0.00018  Score=69.60  Aligned_cols=48  Identities=27%  Similarity=0.472  Sum_probs=40.2

Q ss_pred             HHHHHH-hcCCCCccccchHHHHhhcCcchhhHhhhcCchhcHHHHHHHHHHHHhhc
Q 016190          337 AILKIL-TEFPIDLEQFDRREQLKKSGLGKVIMFLSKSDEETTSNRKLAKDLVDKWV  392 (393)
Q Consensus       337 ~LLkiL-~~LPId~e~~d~rE~LK~SGLGKVVmfL~K~p~ET~eNKrlA~~LI~kWS  392 (393)
                      .+|+.| ..+||.      .+.|+.++||++|..|.||  ..++++.+|+.||.+|.
T Consensus        25 ~~L~~L~~~~~it------~~~L~~T~IG~~Vn~lrkh--~~~~v~~~Ak~Li~~WK   73 (309)
T 1pqv_S           25 EILHVLDKEFVPT------EKLLRETKVGVEVNKFKKS--TNVEISKLVKKMISSWK   73 (309)
T ss_pred             HHHHHHHhcCCCC------HHHHHhCChhHHHHHHHcC--CCHHHHHHHHHHHHHHH
Confidence            455555 556985      4799999999999999999  45589999999999995

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	393
d1wjta_	103	Transcription elongation factor S-II protein 3 {Mo	97.91
d1eo0a_	77	Transcription elongation factor TFIIS N-domain {Ba	97.8

>d1wjta_ a.48.3.1 (A:) Transcription elongation factor S-II protein 3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: N-cbl like
superfamily: Conserved domain common to transcription factors TFIIS, elongin A, CRSP70
family: Conserved domain common to transcription factors TFIIS, elongin A, CRSP70
domain: Transcription elongation factor S-II protein 3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.91  E-value=3e-06  Score=68.85  Aligned_cols=69  Identities=20%  Similarity=0.281  Sum_probs=53.8

Q ss_pred             HHHHHHhhccC-CCCCCCCHHHHHHHHHHHhcCCCCccccchHHHHhhcCcchhhHhhhcCchhcHHHHHHHHHHHHhhc
Q 016190          314 LTLLKNWLEPL-PDGSLPNINIRAAILKILTEFPIDLEQFDRREQLKKSGLGKVIMFLSKSDEETTSNRKLAKDLVDKWV  392 (393)
Q Consensus       314 L~vLk~WLePL-PDgSLPnl~IRt~LLkiL~~LPId~e~~d~rE~LK~SGLGKVVmfL~K~p~ET~eNKrlA~~LI~kWS  392 (393)
                      +..|+.||+-+ .+.+.+.+   -.+|..|..+||+.      ++|+.++||++|.-|+||.. .++++.+|+.||.+|.
T Consensus        14 i~~i~k~L~~~~~~~~~~~v---l~~L~~L~~~~it~------e~L~~T~IGk~Vn~LrK~~~-~~~v~~lAk~Lv~~WK   83 (103)
T d1wjta_          14 LLRIAKKLEKMVSRKKTEGA---LDLLKKLNSCQMSI------QLLQTTRIGVAVNGVRKHCS-DKEVVSLAKVLIKNWK   83 (103)
T ss_dssp             HHHHHHHHHHHHHTTCCSSH---HHHHHHHHTSCCCH------HHHHHTCHHHHHHHHHHHCC-CSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCCHHHH---HHHHHHHHcCCCCH------HHHHhCCccHhHHHHHccCC-CHHHHHHHHHHHHHHH
Confidence            34466677643 45555543   37899999999954      79999999999999998742 2589999999999995

>d1eo0a_ a.48.3.1 (A:) Transcription elongation factor TFIIS N-domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: N-cbl like
superfamily: Conserved domain common to transcription factors TFIIS, elongin A, CRSP70
family: Conserved domain common to transcription factors TFIIS, elongin A, CRSP70
domain: Transcription elongation factor TFIIS N-domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.80  E-value=4.3e-06  Score=65.15  Aligned_cols=48  Identities=25%  Similarity=0.436  Sum_probs=41.8

Q ss_pred             HHHHHHhc-CCCCccccchHHHHhhcCcchhhHhhhcCchhcHHHHHHHHHHHHhhc
Q 016190          337 AILKILTE-FPIDLEQFDRREQLKKSGLGKVIMFLSKSDEETTSNRKLAKDLVDKWV  392 (393)
Q Consensus       337 ~LLkiL~~-LPId~e~~d~rE~LK~SGLGKVVmfL~K~p~ET~eNKrlA~~LI~kWS  392 (393)
                      .+|+.|.+ |||..      +.|+.++||++|..|++|+.  ++++.+|+.||.+|.
T Consensus        25 ~~L~~L~~~~~it~------d~L~~T~iG~~Vn~LRkh~~--~~v~~lAk~Lv~~WK   73 (77)
T d1eo0a_          25 EILHVLDKEFVPTE------KLLRETKVGVEVNKFKKSTN--VEISKLVKKMISSWK   73 (77)
T ss_dssp             HHHHHHTTTCSCST------THHHHHHHHHHHHHCCSSSC--TTHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCCcH------HHHHHCCccHHHHHHhcCCc--HHHHHHHHHHHHHHH
Confidence            56888875 89854      68999999999999999974  579999999999995