Citrus Sinensis ID: 016246

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390--
MAADAVVRNLDCQARKITTFEEIAQVGTTAANGDGEIGELIAKVFEKGWENDLITIFDRKALYNELNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEGIVPGSGVALLYASKELDKLQTTNSDQKIGVQIVQNALKMAAYLIASNAGVDGSVIDKLLEQDSSDLGYNPARGNYVDMFKCGDVDPLKHVPSEFAKATSMISLKNAI
ccHHHHHHHHHHcccccccHHHHHHHEEEcccccHHHHHHHHHHHHccccccEEEEEcccccccEEEEEEccccccccccccccccccccEEEEccEEEEEEccccccHHHHHHHHHHHHHccccEEEEEEccccHHHHHHHHHHcccccEEEEEEcccccHHHHHHHHHHHHHcccEEEEcccccccccccccccccccEEEEEcccEEEEcccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHcccEEEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEHHHHccccccccccccccHHHHHHcccccccccHHHHHHcHHHHHHHHHcc
cHHHHHHHHHHHHcEccccHHHHHHHHHHHccccHHHHHHHHHHHHHHcccccEEEEcccccccEEEEEccEEEccccccHHHccEccccEEEEEccEEEEEcccEccHHHHHHHHHHHHHHcccEEEEEccEcHHHHHHHHHHHHcccccEEEEEccccHHHHHHHHHHHHHHHccccEcccccccHHHccccccEEEEEEEEccccEEEEEEcccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHcEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHcEEEcccHHHHHHHHHccccccccHHHHHHHHHHHHHccHHHHHHHHHHcccHHHHHHHHHHccccEEEEccccEEEEccccccEEEHHHHHHHHHHHHHHHHHHHHc
MAADAVVRNLDCQARKITTFEEIAQVgttaangdgeIGELIAKVFEKGWENDLITIFDRKALYNELNFVkgmklewglkspyffthknkkecvlDGALVLIYDtkisnsnvirqaslpcmmqgqSLLVVAEDVEnevlgdiatdftcttEKVCIIKAAGLAEDRKAIMEDLAILtggqvltggsgmnstyfvplklgsCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAkeegivpgSGVALLYASKEldklqttnsdqkIGVQIVQNALKMAAYLIASNAGVDGSVIDKLLeqdssdlgynpargnyvdmfkcgdvdplkhvpsefaKATSMISLKNAI
maadavvrnldcqarkiTTFEEIAqvgttaangdgeiGELIAKVFEKGWENDLITIFDRKALYNELNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQASLPCMMQGQSLLVVAEDVENEVLGDiatdftcttekVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRstiklstsdklkDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQaakeegivpGSGVALLYASKELDKLQTTNSDQKIGVQIVQNALKMAAYLIASNAGVDGSVIDKLLEQDSSDLGYNPARGNYVDMFKCGDVDPLKHVPsefakatsmislknai
MAADAVVRNLDCQARKITTFEEIAQVGTTAANGDGEIGELIAKVFEKGWENDLITIFDRKALYNELNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEGIVPGSGVALLYASKELDKLQTTNSDQKIGVQIVQNALKMAAYLIASNAGVDGSVIDKLLEQDSSDLGYNPARGNYVDMFKCGDVDPLKHVPSEFAKATSMISLKNAI
*****VVRNLDCQARKITTFEEIAQVGTTAANGDGEIGELIAKVFEKGWENDLITIFDRKALYNELNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEGIVPGSGVALLYASKELDKLQTTNSDQKIGVQIVQNALKMAAYLIASNAGVDGSVIDKLLEQDSSDLGYNPARGNYVDMFKCGDVDPLKH******************
MAADAVVRNLDCQ*R*****EEIAQVGTTAANGDGEIGELIAKVFEKGWENDLITIFDRKALYNELNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEGIVPGSGVALLYASKELDKLQTTNSDQKIGVQIVQNALKMAAYLIASNAGVDGSVIDKLLEQDSSDLGYNPARGNYVDMFKCGDVDPLKHVPSEFAKATSMISLKNAI
MAADAVVRNLDCQARKITTFEEIAQVGTTAANGDGEIGELIAKVFEKGWENDLITIFDRKALYNELNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEGIVPGSGVALLYASKELDKLQTTNSDQKIGVQIVQNALKMAAYLIASNAGVDGSVIDKLLEQDSSDLGYNPARGNYVDMFKCGDVDPLKHVPSEFAKATSMISLKNAI
MAADAVVRNLDCQARKITTFEEIAQVGTTAANGDGEIGELIAKVFEKGWENDLITIFDRKALYNELNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEGIVPGSGVALLYASKELDKLQTTNSDQKIGVQIVQNALKMAAYLIASNAGVDGSVIDKLLEQDSSDLGYNPARGNYVDMFKCGDVDPLKHVPSEFAKATSMISLKNAI
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MAADAVVRNLDCQARKITTFEEIAQVGTTAANGDGEIGELIAKVFEKGWENDLITIFDRKALYNELNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAExxxxxxxxxxxxxxxxxxxxxGIVPGSGVALLYASKELDKLQTTNSDQKIGVQIVQNALKMAAYLIASNAGVDGSVIDKLLEQDSSDLGYNPARGNYVDMFKCGDVDPLKHVPSEFAKATSMISLKNAI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query392 2.2.26 [Sep-21-2011]
P29185577 Chaperonin CPN60-1, mitoc N/A no 0.989 0.672 0.552 1e-111
Q05046575 Chaperonin CPN60-2, mitoc N/A no 0.989 0.674 0.547 1e-109
Q43298576 Chaperonin CPN60-2, mitoc N/A no 0.989 0.673 0.544 1e-109
P29197577 Chaperonin CPN60, mitocho yes no 0.989 0.672 0.547 1e-109
Q05045575 Chaperonin CPN60-1, mitoc N/A no 0.989 0.674 0.544 1e-108
Q8L7B5585 Chaperonin CPN60-like 1, no no 0.989 0.663 0.529 1e-105
P35480587 Chaperonin CPN60, mitocho N/A no 0.987 0.659 0.507 1e-95
Q93ZM7572 Chaperonin CPN60-like 2, no no 0.982 0.673 0.476 5e-92
Q2RY28543 60 kDa chaperonin 1 OS=Rh yes no 0.989 0.714 0.437 1e-83
B6IU98546 60 kDa chaperonin OS=Rhod yes no 0.979 0.703 0.440 6e-83
>sp|P29185|CH61_MAIZE Chaperonin CPN60-1, mitochondrial OS=Zea mays GN=CPN60I PE=1 SV=2 Back     alignment and function desciption
 Score =  402 bits (1033), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 217/393 (55%), Positives = 281/393 (71%), Gaps = 5/393 (1%)

Query: 1   MAADAVVRNLDCQARKITTFEEIAQVGTTAANGDGEIGELIAKVFEKGWENDLITIFDRK 60
           MA DAVV NL   AR I+T EEIAQVGT +ANG+ EIGELIAK  EK  +  +ITI D  
Sbjct: 155 MAVDAVVTNLKGMARMISTSEEIAQVGTISANGEREIGELIAKAMEKVGKEGVITIADGN 214

Query: 61  ALYNELNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQASLPCM 120
            LYNEL  V+GMKL+ G  SPYF T+   ++C L+  L+LI+D K++N + + +     +
Sbjct: 215 TLYNELEVVEGMKLDRGYISPYFITNSKTQKCELEDPLILIHDKKVTNMHAVVKVLEMAL 274

Query: 121 MQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVL 180
            + + LL+VAEDVE+E LG +  +      KVC +KA G  E+RKA ++DLAILTGG+V+
Sbjct: 275 KKQKPLLIVAEDVESEALGTLIINKLRAGIKVCAVKAPGFGENRKANLQDLAILTGGEVI 334

Query: 181 TGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSD-- 238
           T   GMN   F P  LG+CK+V  + D+ VI+ G+G+   I+ER EQ+RS I+ STSD  
Sbjct: 335 TEELGMNLENFEPHMLGTCKKVTVSKDDTVILDGAGDKKSIEERAEQIRSAIENSTSDYD 394

Query: 239 --KLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEGIVPGSGVALLY 296
             KL++RLAKLSGG AVLK+ G  +AEV EKK ++T+AL+A +AA EEGIVPG GVALLY
Sbjct: 395 KEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVALLY 454

Query: 297 ASKELDKLQTTNSDQKIGVQIVQNALKMAAYLIASNAGVDGS-VIDKLLEQDSSDLGYNP 355
           ASKELDKLQT N DQKIGVQI+QNALK   + IASNAGV+G+ V+ KLLEQ+++DLGY+ 
Sbjct: 455 ASKELDKLQTANFDQKIGVQIIQNALKTPVHTIASNAGVEGAVVVGKLLEQENTDLGYDA 514

Query: 356 ARGNYVDMFKCGDVDPLKHVPSEFAKATSMISL 388
           A+G YVDM K G +DPLK + +    A S+ SL
Sbjct: 515 AKGEYVDMVKTGIIDPLKVIRTALVDAASVSSL 547
Implicated in mitochondrial protein import and macromolecular assembly. May facilitate the correct folding of imported proteins. May also prevent misfolding and promote the refolding and proper assembly of unfolded polypeptides generated under stress conditions in the mitochondrial matrix.
Zea mays (taxid: 4577)
>sp|Q05046|CH62_CUCMA Chaperonin CPN60-2, mitochondrial OS=Cucurbita maxima GN=CPN60-2 PE=1 SV=1 Back     alignment and function description
>sp|Q43298|CH62_MAIZE Chaperonin CPN60-2, mitochondrial OS=Zea mays GN=CPN60II PE=2 SV=1 Back     alignment and function description
>sp|P29197|CH60A_ARATH Chaperonin CPN60, mitochondrial OS=Arabidopsis thaliana GN=CPN60 PE=1 SV=2 Back     alignment and function description
>sp|Q05045|CH61_CUCMA Chaperonin CPN60-1, mitochondrial OS=Cucurbita maxima GN=CPN60-1 PE=1 SV=1 Back     alignment and function description
>sp|Q8L7B5|CH60B_ARATH Chaperonin CPN60-like 1, mitochondrial OS=Arabidopsis thaliana GN=At2g33210 PE=1 SV=1 Back     alignment and function description
>sp|P35480|CH60_BRANA Chaperonin CPN60, mitochondrial OS=Brassica napus PE=2 SV=1 Back     alignment and function description
>sp|Q93ZM7|CH60C_ARATH Chaperonin CPN60-like 2, mitochondrial OS=Arabidopsis thaliana GN=At3g13860 PE=1 SV=2 Back     alignment and function description
>sp|Q2RY28|CH601_RHORT 60 kDa chaperonin 1 OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=groL1 PE=3 SV=1 Back     alignment and function description
>sp|B6IU98|CH60_RHOCS 60 kDa chaperonin OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN=groL PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query392
115450675 577 Os03g0143400 [Oryza sativa Japonica Grou 0.989 0.672 0.564 1e-111
110289207 634 Chaperonin CPN60-1, mitochondrial precur 0.989 0.611 0.559 1e-111
115482382 574 Os10g0462900 [Oryza sativa Japonica Grou 0.989 0.675 0.559 1e-111
255554262 574 chaperonin-60kD, ch60, putative [Ricinus 0.989 0.675 0.559 1e-111
2506275 577 RecName: Full=Chaperonin CPN60-1, mitoch 0.989 0.672 0.552 1e-109
242039457 577 hypothetical protein SORBIDRAFT_01g02001 0.989 0.672 0.554 1e-109
162458253 577 chaperonin CPN60-1, mitochondrial precur 0.989 0.672 0.552 1e-109
24637539 545 heat shock protein 60 [Prunus dulcis] 0.989 0.711 0.562 1e-109
22242 577 chaperonin hsp60 [Zea mays] 0.989 0.672 0.552 1e-109
326491001 574 predicted protein [Hordeum vulgare subsp 0.989 0.675 0.549 1e-109
>gi|115450675|ref|NP_001048938.1| Os03g0143400 [Oryza sativa Japonica Group] gi|108706134|gb|ABF93929.1| Chaperonin CPN60-1, mitochondrial precursor, putative, expressed [Oryza sativa Japonica Group] gi|113547409|dbj|BAF10852.1| Os03g0143400 [Oryza sativa Japonica Group] gi|215704319|dbj|BAG93753.1| unnamed protein product [Oryza sativa Japonica Group] gi|218192069|gb|EEC74496.1| hypothetical protein OsI_09970 [Oryza sativa Indica Group] gi|222624174|gb|EEE58306.1| hypothetical protein OsJ_09368 [Oryza sativa Japonica Group] gi|284431758|gb|ADB84620.1| chaperonin [Oryza sativa Japonica Group] Back     alignment and taxonomy information
 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 222/393 (56%), Positives = 281/393 (71%), Gaps = 5/393 (1%)

Query: 1   MAADAVVRNLDCQARKITTFEEIAQVGTTAANGDGEIGELIAKVFEKGWENDLITIFDRK 60
           MA D VV NL   AR I+T EEIAQVGT +ANG+ EIGELIAK  EK  +  +ITI D  
Sbjct: 153 MAVDEVVTNLKGMARMISTSEEIAQVGTISANGEREIGELIAKAMEKVGKEGVITITDGN 212

Query: 61  ALYNELNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQASLPCM 120
            LYNEL  V+GMKL+ G  SPYF T++  ++C LD  L+LI+D K+SN + + +     +
Sbjct: 213 TLYNELEVVEGMKLDRGYISPYFITNQKNQKCELDDPLILIHDKKVSNLHAVVKVLELAL 272

Query: 121 MQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVL 180
            + + LL+VAEDVE+E LG +  +      KVC +KA G  E RKA ++DLAILTGG+V+
Sbjct: 273 KKQRPLLIVAEDVESEALGTLIINKLRAGIKVCAVKAPGFGESRKANLQDLAILTGGEVI 332

Query: 181 TGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSD-- 238
           T   GMN   F P  LG+CK+V  + D+ VI+ G+G+   I+ER EQLRS I+LSTSD  
Sbjct: 333 TEELGMNLENFEPQMLGTCKKVTVSKDDTVILDGAGDKKAIEERAEQLRSAIELSTSDYD 392

Query: 239 --KLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEGIVPGSGVALLY 296
             KL++RLAKLSGG AVLK+ G  +AEV EKK ++T+AL+A +AA EEGIVPG GVALLY
Sbjct: 393 KEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVALLY 452

Query: 297 ASKELDKLQTTNSDQKIGVQIVQNALKMAAYLIASNAGVDGSV-IDKLLEQDSSDLGYNP 355
           ASK+LDKLQT N DQKIGVQI+QNALK   + IASNAGV+GSV I KLLEQD++DLGY+ 
Sbjct: 453 ASKDLDKLQTANFDQKIGVQIIQNALKTPVHTIASNAGVEGSVIIGKLLEQDNTDLGYDA 512

Query: 356 ARGNYVDMFKCGDVDPLKHVPSEFAKATSMISL 388
           A+G YVDM K G +DPLK + +    A S+ SL
Sbjct: 513 AKGEYVDMVKSGIIDPLKVIRTALVDAASVSSL 545

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|110289207|gb|AAP54159.2| Chaperonin CPN60-1, mitochondrial precursor, putative, expressed [Oryza sativa Japonica Group] Back     alignment and taxonomy information
>gi|115482382|ref|NP_001064784.1| Os10g0462900 [Oryza sativa Japonica Group] gi|22758324|gb|AAN05528.1| mitochondrial chaperonin-60 [Oryza sativa Japonica Group] gi|113639393|dbj|BAF26698.1| Os10g0462900 [Oryza sativa Japonica Group] gi|218184691|gb|EEC67118.1| hypothetical protein OsI_33923 [Oryza sativa Indica Group] gi|222612963|gb|EEE51095.1| hypothetical protein OsJ_31804 [Oryza sativa Japonica Group] gi|313575773|gb|ADR66966.1| 60 kDa chaperonin [Oryza sativa Japonica Group] Back     alignment and taxonomy information
>gi|255554262|ref|XP_002518171.1| chaperonin-60kD, ch60, putative [Ricinus communis] gi|223542767|gb|EEF44304.1| chaperonin-60kD, ch60, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|2506275|sp|P29185.2|CH61_MAIZE RecName: Full=Chaperonin CPN60-1, mitochondrial; AltName: Full=HSP60-1; Flags: Precursor Back     alignment and taxonomy information
>gi|242039457|ref|XP_002467123.1| hypothetical protein SORBIDRAFT_01g020010 [Sorghum bicolor] gi|241920977|gb|EER94121.1| hypothetical protein SORBIDRAFT_01g020010 [Sorghum bicolor] Back     alignment and taxonomy information
>gi|162458253|ref|NP_001105716.1| chaperonin CPN60-1, mitochondrial precursor [Zea mays] gi|22248|emb|CAA78100.1| mitochondrial chaperonin-60 [Zea mays] Back     alignment and taxonomy information
>gi|24637539|gb|AAN63805.1| heat shock protein 60 [Prunus dulcis] Back     alignment and taxonomy information
>gi|22242|emb|CAA77645.1| chaperonin hsp60 [Zea mays] Back     alignment and taxonomy information
>gi|326491001|dbj|BAK05600.1| predicted protein [Hordeum vulgare subsp. vulgare] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query392
TAIR|locus:2076081577 HSP60 "heat shock protein 60" 0.989 0.672 0.547 1.3e-100
TAIR|locus:2046590585 HSP60-2 "heat shock protein 60 0.989 0.663 0.529 5.8e-98
TAIR|locus:2087959572 HSP60-3A "heat shock protein 6 0.987 0.676 0.478 1.4e-85
GENEDB_PFALCIPARUM|PF10_0153580 PF10_0153 "hsp60" [Plasmodium 0.979 0.662 0.413 6.7e-72
UNIPROTKB|Q8IJN9580 PF10_0153 "Heat shock protein 0.979 0.662 0.413 6.7e-72
TIGR_CMR|GSU_3340544 GSU_3340 "60 kDa chaperonin" [ 0.979 0.705 0.412 1.4e-69
TIGR_CMR|CBU_1718552 CBU_1718 "chaperonin, 60 kDa" 0.987 0.701 0.395 2.7e-68
UNIPROTKB|Q5ZL72573 HSPD1 "60 kDa heat shock prote 0.987 0.675 0.401 2.4e-67
UNIPROTKB|P10809573 HSPD1 "60 kDa heat shock prote 0.987 0.675 0.401 5.1e-67
MGI|MGI:96242573 Hspd1 "heat shock protein 1 (c 0.984 0.673 0.4 6.5e-67
TAIR|locus:2076081 HSP60 "heat shock protein 60" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 998 (356.4 bits), Expect = 1.3e-100, P = 1.3e-100
 Identities = 215/393 (54%), Positives = 280/393 (71%)

Query:     1 MAADAVVRNLDCQARKITTFEEIAQVGTTAANGDGEIGELIAKVFEKGWENDLITIFDRK 60
             MA DAVV NL  +AR I+T EEIAQVGT +ANG+ EIGELIAK  EK  +  +ITI D K
Sbjct:   152 MAVDAVVTNLKSKARMISTSEEIAQVGTISANGEREIGELIAKAMEKVGKEGVITIQDGK 211

Query:    61 ALYNELNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQASLPCM 120
              L+NEL  V+GMKL+ G  SPYF T++  ++C LD  L+LI++ KIS+ N I +     +
Sbjct:   212 TLFNELEVVEGMKLDRGYTSPYFITNQKTQKCELDDPLILIHEKKISSINSIVKVLELAL 271

Query:   121 MQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVL 180
              + + LL+V+EDVE++ L  +  +      KVC IKA G  E+RKA ++DLA LTGG+V+
Sbjct:   272 KRQRPLLIVSEDVESDALATLILNKLRAGIKVCAIKAPGFGENRKANLQDLAALTGGEVI 331

Query:   181 TGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSD-- 238
             T   GMN        LG+CK+V  + D+ VI+ G+G+   I+ERCEQ+RS I+LSTSD  
Sbjct:   332 TDELGMNLEKVDLSMLGTCKKVTVSKDDTVILDGAGDKKGIEERCEQIRSAIELSTSDYD 391

Query:   239 --KLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEGIVPGSGVALLY 296
               KL++RLAKLSGG AVLK+ G  +AEV EKK ++T+AL+A +AA EEGI+PG GVALLY
Sbjct:   392 KEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGILPGGGVALLY 451

Query:   297 ASKELDKLQTTNSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLEQDSSDLGYNP 355
             A++EL+KL T N DQKIGVQI+QNALK   Y IASNAGV+G+VI  KLLEQD+ DLGY+ 
Sbjct:   452 AARELEKLPTANFDQKIGVQIIQNALKTPVYTIASNAGVEGAVIVGKLLEQDNPDLGYDA 511

Query:   356 ARGNYVDMFKCGDVDPLKHVPSEFAKATSMISL 388
             A+G YVDM K G +DPLK + +    A S+ SL
Sbjct:   512 AKGEYVDMVKAGIIDPLKVIRTALVDAASVSSL 544
GO:0005524 "ATP binding" evidence=IEA;IDA
GO:0005739 "mitochondrion" evidence=ISM;IDA
GO:0006457 "protein folding" evidence=IEA;RCA
GO:0042026 "protein refolding" evidence=IEA
GO:0044267 "cellular protein metabolic process" evidence=IEA
GO:0051131 "chaperone-mediated protein complex assembly" evidence=TAS
GO:0007005 "mitochondrion organization" evidence=TAS
GO:0009408 "response to heat" evidence=IEP;RCA
GO:0022626 "cytosolic ribosome" evidence=IDA
GO:0005759 "mitochondrial matrix" evidence=IDA
GO:0046686 "response to cadmium ion" evidence=IEP
GO:0005774 "vacuolar membrane" evidence=IDA
GO:0005829 "cytosol" evidence=RCA;IDA
GO:0005507 "copper ion binding" evidence=IDA
GO:0005794 "Golgi apparatus" evidence=RCA
GO:0006626 "protein targeting to mitochondrion" evidence=RCA
GO:0009644 "response to high light intensity" evidence=RCA
GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA
GO:0042542 "response to hydrogen peroxide" evidence=RCA
TAIR|locus:2046590 HSP60-2 "heat shock protein 60-2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2087959 HSP60-3A "heat shock protein 60-3A" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
GENEDB_PFALCIPARUM|PF10_0153 PF10_0153 "hsp60" [Plasmodium falciparum (taxid:5833)] Back     alignment and assigned GO terms
UNIPROTKB|Q8IJN9 PF10_0153 "Heat shock protein 60" [Plasmodium falciparum 3D7 (taxid:36329)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_3340 GSU_3340 "60 kDa chaperonin" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
TIGR_CMR|CBU_1718 CBU_1718 "chaperonin, 60 kDa" [Coxiella burnetii RSA 493 (taxid:227377)] Back     alignment and assigned GO terms
UNIPROTKB|Q5ZL72 HSPD1 "60 kDa heat shock protein, mitochondrial" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|P10809 HSPD1 "60 kDa heat shock protein, mitochondrial" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:96242 Hspd1 "heat shock protein 1 (chaperonin)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P29197CH60A_ARATHNo assigned EC number0.54700.98970.6724yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query392
cd03344520 cd03344, GroEL, GroEL_like type I chaperonin 1e-129
PTZ00114555 PTZ00114, PTZ00114, Heat shock protein 60; Provisi 1e-123
PRK00013542 PRK00013, groEL, chaperonin GroEL; Reviewed 1e-116
PRK12849542 PRK12849, groEL, chaperonin GroEL; Reviewed 1e-109
TIGR02348524 TIGR02348, GroEL, chaperonin GroL 1e-109
PRK12851541 PRK12851, groEL, chaperonin GroEL; Reviewed 1e-104
PRK12850544 PRK12850, groEL, chaperonin GroEL; Reviewed 1e-103
PRK12852545 PRK12852, groEL, chaperonin GroEL; Reviewed 2e-97
PRK14104546 PRK14104, PRK14104, chaperonin GroEL; Provisional 2e-89
CHL00093529 CHL00093, groEL, chaperonin GroEL 1e-81
PLN03167600 PLN03167, PLN03167, Chaperonin-60 beta subunit; Pr 8e-64
COG0459524 COG0459, GroL, Chaperonin GroEL (HSP60 family) [Po 8e-57
cd00309464 cd00309, chaperonin_type_I_II, chaperonin families 4e-42
pfam00118481 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin fami 9e-35
cd03333209 cd03333, chaperonin_like, chaperonin_like superfam 3e-12
cd03343517 cd03343, cpn60, cpn60 chaperonin family 1e-04
cd03336517 cd03336, TCP1_beta, TCP-1 (CTT or eukaryotic type 7e-04
>gnl|CDD|239460 cd03344, GroEL, GroEL_like type I chaperonin Back     alignment and domain information 
 Score =  380 bits (979), Expect = e-129
 Identities = 181/396 (45%), Positives = 246/396 (62%), Gaps = 14/396 (3%)

Query: 2   AADAVVRNLDCQARKITTFEEIAQVGTTAANGDGEIGELIAKVFEKGWENDLITIFDRKA 61
           A +AVV  L   ++ + T EEIAQV T +ANGD EIGELIA+  EK  ++ +IT+ + K 
Sbjct: 120 AVEAVVEELKKLSKPVKTKEEIAQVATISANGDEEIGELIAEAMEKVGKDGVITVEEGKT 179

Query: 62  LYNELNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQASLP--- 118
           L  EL  V+GM+ + G  SPYF T   K E  L+   +L+ D KIS+     Q  LP   
Sbjct: 180 LETELEVVEGMQFDRGYLSPYFVTDPEKMEVELENPYILLTDKKISSI----QELLPILE 235

Query: 119 -CMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGG 177
                G+ LL++AEDVE E L  +  +      KVC +KA G  + RKA++ED+AILTGG
Sbjct: 236 LVAKAGRPLLIIAEDVEGEALATLVVNKLRGGLKVCAVKAPGFGDRRKAMLEDIAILTGG 295

Query: 178 QVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTS 237
            V++   G+         LG  K+V+ T D+  IIGG+G+   I+ R  Q+R  I+ +TS
Sbjct: 296 TVISEELGLKLEDVTLEDLGRAKKVVVTKDDTTIIGGAGDKAAIKARIAQIRKQIEETTS 355

Query: 238 D----KLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEGIVPGSGVA 293
           D    KL++RLAKLSGG AV+KV G  + E++EKK ++ +AL+A +AA EEGIVPG GVA
Sbjct: 356 DYDKEKLQERLAKLSGGVAVIKVGGATEVELKEKKDRVEDALNATRAAVEEGIVPGGGVA 415

Query: 294 LLYASKELDKLQTTNSDQKIGVQIVQNALKMAAYLIASNAGVDGS-VIDKLLEQDSSDLG 352
           LL AS  LDKL+  N D+K+G++IV+ AL+     IA NAGVDGS V++K+LE      G
Sbjct: 416 LLRASPALDKLKALNGDEKLGIEIVRRALEAPLRQIAENAGVDGSVVVEKVLES-PDGFG 474

Query: 353 YNPARGNYVDMFKCGDVDPLKHVPSEFAKATSMISL 388
           Y+ A G YVDM + G +DP K V S    A S+ SL
Sbjct: 475 YDAATGEYVDMIEAGIIDPTKVVRSALQNAASVASL 510

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). With the aid of cochaperonin GroES, GroEL encapsulates non-native substrate proteins inside the cavity of the GroEL-ES complex and promotes folding by using energy derived from ATP hydrolysis. Length = 520
>gnl|CDD|185455 PTZ00114, PTZ00114, Heat shock protein 60; Provisional Back     alignment and domain information
>gnl|CDD|234573 PRK00013, groEL, chaperonin GroEL; Reviewed Back     alignment and domain information
>gnl|CDD|237230 PRK12849, groEL, chaperonin GroEL; Reviewed Back     alignment and domain information
>gnl|CDD|233828 TIGR02348, GroEL, chaperonin GroL Back     alignment and domain information
>gnl|CDD|171770 PRK12851, groEL, chaperonin GroEL; Reviewed Back     alignment and domain information
>gnl|CDD|237231 PRK12850, groEL, chaperonin GroEL; Reviewed Back     alignment and domain information
>gnl|CDD|237232 PRK12852, groEL, chaperonin GroEL; Reviewed Back     alignment and domain information
>gnl|CDD|172594 PRK14104, PRK14104, chaperonin GroEL; Provisional Back     alignment and domain information
>gnl|CDD|177025 CHL00093, groEL, chaperonin GroEL Back     alignment and domain information
>gnl|CDD|215611 PLN03167, PLN03167, Chaperonin-60 beta subunit; Provisional Back     alignment and domain information
>gnl|CDD|223535 COG0459, GroL, Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|238189 cd00309, chaperonin_type_I_II, chaperonin families, type I and type II Back     alignment and domain information
>gnl|CDD|215730 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin family Back     alignment and domain information
>gnl|CDD|239449 cd03333, chaperonin_like, chaperonin_like superfamily Back     alignment and domain information
>gnl|CDD|239459 cd03343, cpn60, cpn60 chaperonin family Back     alignment and domain information
>gnl|CDD|239452 cd03336, TCP1_beta, TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 392
PRK12852545 groEL chaperonin GroEL; Reviewed 100.0
PRK14104546 chaperonin GroEL; Provisional 100.0
PRK00013542 groEL chaperonin GroEL; Reviewed 100.0
PTZ00114555 Heat shock protein 60; Provisional 100.0
PRK12849542 groEL chaperonin GroEL; Reviewed 100.0
cd03344520 GroEL GroEL_like type I chaperonin. Chaperonins ar 100.0
TIGR02348524 GroEL chaperonin GroL. This family consists of Gro 100.0
CHL00093529 groEL chaperonin GroEL 100.0
PRK12850544 groEL chaperonin GroEL; Reviewed 100.0
PRK12851541 groEL chaperonin GroEL; Reviewed 100.0
PLN03167600 Chaperonin-60 beta subunit; Provisional 100.0
KOG0356550 consensus Mitochondrial chaperonin, Cpn60/Hsp60p [ 100.0
cd03343517 cpn60 cpn60 chaperonin family. Chaperonins are inv 100.0
cd03342484 TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaper 100.0
TIGR02347531 chap_CCT_zeta T-complex protein 1, zeta subunit. M 100.0
TIGR02339519 thermosome_arch thermosome, various subunits, arch 100.0
cd03335527 TCP1_alpha TCP-1 (CTT or eukaryotic type II) chape 100.0
COG0459524 GroL Chaperonin GroEL (HSP60 family) [Posttranslat 100.0
TIGR02340536 chap_CCT_alpha T-complex protein 1, alpha subunit. 100.0
cd03338515 TCP1_delta TCP-1 (CTT or eukaryotic type II) chape 100.0
cd03339526 TCP1_epsilon TCP-1 (CTT or eukaryotic type II) cha 100.0
cd03340522 TCP1_eta TCP-1 (CTT or eukaryotic type II) chapero 100.0
TIGR02342517 chap_CCT_delta T-complex protein 1, delta subunit. 100.0
TIGR02343532 chap_CCT_epsi T-complex protein 1, epsilon subunit 100.0
TIGR02345522 chap_CCT_eta T-complex protein 1, eta subunit. Mem 100.0
TIGR02344525 chap_CCT_gamma T-complex protein 1, gamma subunit. 100.0
TIGR02346531 chap_CCT_theta T-complex protein 1, theta subunit. 100.0
cd03336517 TCP1_beta TCP-1 (CTT or eukaryotic type II) chaper 100.0
PTZ00212533 T-complex protein 1 subunit beta; Provisional 100.0
cd03337480 TCP1_gamma TCP-1 (CTT or eukaryotic type II) chape 100.0
cd03341472 TCP1_theta TCP-1 (CTT or eukaryotic type II) chape 100.0
cd00309464 chaperonin_type_I_II chaperonin families, type I a 100.0
TIGR02341519 chap_CCT_beta T-complex protein 1, beta subunit. M 100.0
KOG0361543 consensus Chaperonin complex component, TCP-1 eta 100.0
PF00118485 Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperon 100.0
KOG0358534 consensus Chaperonin complex component, TCP-1 delt 100.0
KOG0363527 consensus Chaperonin complex component, TCP-1 beta 100.0
KOG0364527 consensus Chaperonin complex component, TCP-1 gamm 100.0
KOG0360545 consensus Chaperonin complex component, TCP-1 alph 100.0
KOG0357400 consensus Chaperonin complex component, TCP-1 epsi 100.0
KOG0359520 consensus Chaperonin complex component, TCP-1 zeta 100.0
KOG0362537 consensus Chaperonin complex component, TCP-1 thet 100.0
cd03333209 chaperonin_like chaperonin_like superfamily. Chape 99.98
cd03334261 Fab1_TCP TCP-1 like domain of the eukaryotic phosp 99.96
KOG0230 1598 consensus Phosphatidylinositol-4-phosphate 5-kinas 99.03
COG0459524 GroL Chaperonin GroEL (HSP60 family) [Posttranslat 98.01
>PRK12852 groEL chaperonin GroEL; Reviewed Back     alignment and domain information 
Probab=100.00  E-value=1.1e-84  Score=678.44  Aligned_cols=392  Identities=39%  Similarity=0.623  Sum_probs=377.4

Q ss_pred             ChHHHHHHHHhcccccCCCHHHHHHHHHHhcCCchhHHHHHHHHHHhhccCceEEEEcCCCccceeEEEeeEEEeccccc
Q 016246            1 MAADAVVRNLDCQARKITTFEEIAQVGTTAANGDGEIGELIAKVFEKGWENDLITIFDRKALYNELNFVKGMKLEWGLKS   80 (392)
Q Consensus         1 ~A~~~~l~~L~~~a~~v~~~~~l~~Va~ts~~~~~~~~~li~~a~~~vg~~g~I~v~~g~~~~~~~~~v~G~~~d~g~~s   80 (392)
                      +|++.++++|+++++|+++.+++.+||++|+++++.+++++++|+.+++++|.|+++.|++..+++++++|++|++||.+
T Consensus       122 ~A~~~~l~~L~~~s~~v~~~~~l~~va~~s~~~~~~l~~li~eA~~~vg~~g~i~v~~g~~~~~~~~~v~G~~~~~g~~~  201 (545)
T PRK12852        122 IAVAAVVKDIEKRAKPVASSAEIAQVGTISANGDAAIGKMIAQAMQKVGNEGVITVEENKSLETEVDIVEGMKFDRGYLS  201 (545)
T ss_pred             HHHHHHHHHHHHhcccCCCHHHHHHHHhhhcCChHHHHHHHHHHHHHhccCCceeeecCCCcceEEEEEEeEEecCCccC
Confidence            47889999999999999887789999999999999999999999999999999999998887678999999999999999


Q ss_pred             ccccccccccceeecCceeeecccccCCHHHHHHHHHHHHhcCCCEEEEecCcchhhhhhHHhhccCCCceEEEEeccCC
Q 016246           81 PYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGL  160 (392)
Q Consensus        81 ~~~~~~~~~~~~~l~~~~Il~~d~~i~~~~~~~~~l~~i~~~g~~lvi~~~~i~~~al~~L~~n~~~~~~~i~avr~~~~  160 (392)
                      |||++++++|+.+++||+||++|++|+++++++|+|+.+.++|+||||++++|+++++++|+.|+++|.++|++||+|+|
T Consensus       202 p~~v~~~~~~~~~l~n~~Ili~d~~i~~~~~i~~~l~~i~~~g~~lvI~~~~i~~~al~~l~~nk~~~~~~i~av~~~~~  281 (545)
T PRK12852        202 PYFVTNAEKMTVELDDAYILLHEKKLSGLQAMLPVLEAVVQSGKPLLIIAEDVEGEALATLVVNRLRGGLKVAAVKAPGF  281 (545)
T ss_pred             CccccccccceEEecCceEEEecCccCCHHHHHHHHHHHHHhCcCEEEECCCCcHHHHHHHHHhcccccceEEEEecCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccchhhHHHHHHHHhCCeEecCCCCCCcCCCCCCCceeeeEEEEecceEEEEcCCCChhhHHHHHHHHHHHhhhccc---
Q 016246          161 AEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTS---  237 (392)
Q Consensus       161 g~~rk~~ledla~~tGa~i~s~~~~~~~~~~~~~~LG~~~~v~i~~~~~~~~~g~~~~~~i~~r~~~l~~~l~~~~s---  237 (392)
                      |++|+++|+|||++|||++++++.+++++++++++||+|+.|++++++|++++|+++++.+..|+++|+++++++.+   
T Consensus       282 ~~~r~~~l~~ia~~tGa~~i~~~~~~~l~~~~~~~lG~~~~v~~~~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~~  361 (545)
T PRK12852        282 GDRRKAMLEDIAILTGGQLISEDLGIKLENVTLKMLGRAKKVVIDKENTTIVNGAGKKADIEARVGQIKAQIEETTSDYD  361 (545)
T ss_pred             ccchHhHHHHHHHhcCCEEEecCcCCCcCCCCHHHCCCCcEEEEEccEEEEEeCCCCHHHHHHHHHHHHHHHHhcccHHH
Confidence            99999999999999999999988788899999999999999999999999999999999999999999999999877   


Q ss_pred             -HHHHHHHhhhcCCeeEEEEcCCcHhHHHhHHHHHHHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHhcCCChhHHHHHH
Q 016246          238 -DKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEGIVPGSGVALLYASKELDKLQTTNSDQKIGVQ  316 (392)
Q Consensus       238 -~~l~~Rla~l~g~~~tI~vrG~t~~~l~E~~r~i~DAl~a~r~al~~gvVpGGGa~e~~~s~~L~~~~~~~~~~q~g~~  316 (392)
                       ++|+|||+||+|++|||+|||+|+.+++|+||+++||+|++|+++++|||||||++|++++..|++++..++++|+|++
T Consensus       362 ~~~l~~R~~~l~~~~~tI~irG~t~~~l~E~er~i~DAl~a~~~a~~~g~VpGGGa~e~~~s~~L~~~~~~~~~~q~~i~  441 (545)
T PRK12852        362 REKLQERLAKLAGGVAVIRVGGATEVEVKEKKDRVEDALNATRAAVQEGIVPGGGVALLRAKKAVGRINNDNADVQAGIN  441 (545)
T ss_pred             HHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCcCchHHHHHHHHHHHHhhcCCcHHHHHHH
Confidence             8999999999999999999999999999999999999999999999999999999999999999988766788999999


Q ss_pred             HHHHHHHHHHHHHHHhcCCChHHH-HHHHhcCCCCeeEeCCCCccccccccCCccccccHHHHHHHHHHHHHHHhcC
Q 016246          317 IVQNALKMAAYLIASNAGVDGSVI-DKLLEQDSSDLGYNPARGNYVDMFKCGDVDPLKHVPSEFAKATSMISLKNAI  392 (392)
Q Consensus       317 ~~a~AL~~~p~~La~NaG~d~~~v-~~l~~~~~~~~G~d~~~g~~~dm~~~gI~Dp~~v~~~al~~A~~~a~~iL~i  392 (392)
                      +|++||+.||++||+|||+|+.++ ++|++.+++++|||+.+|+++||++.|||||+.||+++|++|+++|++||+|
T Consensus       442 ~~a~AL~~ip~~La~NaG~d~~~vl~~l~~~~~~~~G~d~~~g~~~d~~~~GI~Dp~~vk~~al~~A~e~a~~iL~i  518 (545)
T PRK12852        442 IVLKALEAPIRQIAENAGVEGSIVVGKILENKSETFGFDAQTEEYVDMVAKGIIDPAKVVRTALQDAASVAGLLVTT  518 (545)
T ss_pred             HHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhcCCCeeEeCcCCCcccHHhCcCCcChHHHHHHHHHHHHHHHHHHhH
Confidence            999999999999999999999999 9998755678999999999999999999999999999999999999999986

>PRK14104 chaperonin GroEL; Provisional Back     alignment and domain information
>PRK00013 groEL chaperonin GroEL; Reviewed Back     alignment and domain information
>PTZ00114 Heat shock protein 60; Provisional Back     alignment and domain information
>PRK12849 groEL chaperonin GroEL; Reviewed Back     alignment and domain information
>cd03344 GroEL GroEL_like type I chaperonin Back     alignment and domain information
>TIGR02348 GroEL chaperonin GroL Back     alignment and domain information
>CHL00093 groEL chaperonin GroEL Back     alignment and domain information
>PRK12850 groEL chaperonin GroEL; Reviewed Back     alignment and domain information
>PRK12851 groEL chaperonin GroEL; Reviewed Back     alignment and domain information
>PLN03167 Chaperonin-60 beta subunit; Provisional Back     alignment and domain information
>KOG0356 consensus Mitochondrial chaperonin, Cpn60/Hsp60p [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd03343 cpn60 cpn60 chaperonin family Back     alignment and domain information
>cd03342 TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit Back     alignment and domain information
>TIGR02347 chap_CCT_zeta T-complex protein 1, zeta subunit Back     alignment and domain information
>TIGR02339 thermosome_arch thermosome, various subunits, archaeal Back     alignment and domain information
>cd03335 TCP1_alpha TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit Back     alignment and domain information
>COG0459 GroL Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR02340 chap_CCT_alpha T-complex protein 1, alpha subunit Back     alignment and domain information
>cd03338 TCP1_delta TCP-1 (CTT or eukaryotic type II) chaperonin family, delta subunit Back     alignment and domain information
>cd03339 TCP1_epsilon TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit Back     alignment and domain information
>cd03340 TCP1_eta TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit Back     alignment and domain information
>TIGR02342 chap_CCT_delta T-complex protein 1, delta subunit Back     alignment and domain information
>TIGR02343 chap_CCT_epsi T-complex protein 1, epsilon subunit Back     alignment and domain information
>TIGR02345 chap_CCT_eta T-complex protein 1, eta subunit Back     alignment and domain information
>TIGR02344 chap_CCT_gamma T-complex protein 1, gamma subunit Back     alignment and domain information
>TIGR02346 chap_CCT_theta T-complex protein 1, theta subunit Back     alignment and domain information
>cd03336 TCP1_beta TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit Back     alignment and domain information
>PTZ00212 T-complex protein 1 subunit beta; Provisional Back     alignment and domain information
>cd03337 TCP1_gamma TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit Back     alignment and domain information
>cd03341 TCP1_theta TCP-1 (CTT or eukaryotic type II) chaperonin family, theta subunit Back     alignment and domain information
>cd00309 chaperonin_type_I_II chaperonin families, type I and type II Back     alignment and domain information
>TIGR02341 chap_CCT_beta T-complex protein 1, beta subunit Back     alignment and domain information
>KOG0361 consensus Chaperonin complex component, TCP-1 eta subunit (CCT7) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF00118 Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperonins cpn60 signature Chaperonins TCP-1 signatures 60 kd chaperonin signature; InterPro: IPR002423 Partially folded polypeptide chains, either newly made by ribosomes or emerging from mature proteins unfolded by stress, run the risk of aggregating with one another to the detriment of the organism Back     alignment and domain information
>KOG0358 consensus Chaperonin complex component, TCP-1 delta subunit (CCT4) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0363 consensus Chaperonin complex component, TCP-1 beta subunit (CCT2) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0364 consensus Chaperonin complex component, TCP-1 gamma subunit (CCT3) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0360 consensus Chaperonin complex component, TCP-1 alpha subunit (CCT1) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0357 consensus Chaperonin complex component, TCP-1 epsilon subunit (CCT5) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0359 consensus Chaperonin complex component, TCP-1 zeta subunit (CCT6) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0362 consensus Chaperonin complex component, TCP-1 theta subunit (CCT8) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd03333 chaperonin_like chaperonin_like superfamily Back     alignment and domain information
>cd03334 Fab1_TCP TCP-1 like domain of the eukaryotic phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase Fab1 Back     alignment and domain information
>KOG0230 consensus Phosphatidylinositol-4-phosphate 5-kinase and related FYVE finger-containing proteins [Signal transduction mechanisms] Back     alignment and domain information
>COG0459 GroL Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query392
1iok_A545 Crystal Structure Of Chaperonin-60 From Paracoccus 1e-68
1we3_A543 Crystal Structure Of The Chaperonin Complex Cpn60CP 3e-62
1pcq_A524 Crystal Structure Of Groel-Groes Length = 524 5e-62
2yey_A524 Crystal Structure Of The Allosteric-Defective Chape 5e-62
1kp8_A547 Structural Basis For Groel-Assisted Protein Folding 5e-62
1aon_A547 Crystal Structure Of The Asymmetric Chaperonin Comp 6e-62
3c9v_A526 C7 Symmetrized Structure Of Unliganded Groel At 4.7 6e-62
1ss8_A524 Groel Length = 524 7e-62
1gr5_A547 Solution Structure Of Apo Groel By Cryo-Electron Mi 8e-62
1sx3_A525 Groel14-(Atpgammas)14 Length = 525 8e-62
1j4z_A547 Structural And Mechanistic Basis For Allostery In T 9e-62
2eu1_A548 Crystal Structure Of The Chaperonin Groel-E461k Len 1e-61
4aaq_A548 Atp-Triggered Molecular Mechanics Of The Chaperonin 1e-61
3cau_A526 D7 Symmetrized Structure Of Unliganded Groel At 4.2 2e-61
1oel_A547 Conformational Variability In The Refined Structure 2e-61
1grl_A548 The Crystal Structure Of The Bacterial Chaperonin G 2e-61
3rtk_A546 Crystal Structure Of Cpn60.2 From Mycobacterium Tub 4e-52
1sjp_A504 Mycobacterium Tuberculosis Chaperonin60.2 Length = 4e-52
1la1_A192 Gro-El Fragment (Apical Domain) Comprising Residues 6e-28
1fy9_A193 Crystal Structure Of The Hexa-Substituted Mutant Of 2e-27
1fya_A193 Crystal Structure Of The Hexa-Substituted Mutant Of 2e-27
3m6c_A194 Crystal Structure Of Mycobacterium Tuberculosis Gro 3e-27
1kid_A203 Groel (Hsp60 Class) Fragment (Apical Domain) Compri 3e-26
3osx_A201 Crystal Structure Of Apical Domain Of Insecticidal 6e-23
1jon_A155 Groel (Hsp60 Class) Fragment Comprising Residues 19 4e-19
1dk7_A146 Crystal Structure Of An Isolated Apical Domain Of G 3e-17
1srv_A145 Thermus Thermophilus Groel (Hsp60 Class) Fragment ( 5e-17
>pdb|1IOK|A Chain A, Crystal Structure Of Chaperonin-60 From Paracoccus Denitrificans Length = 545 Back     alignment and structure 
Iteration: 1

 Score =  256 bits (655), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 153/392 (39%), Positives = 231/392 (58%), Gaps = 13/392 (3%)
Query: 6   VVRNLDCQARKITTFEEIAQVGTTAANGDGEIGELIAKVFEKGWENDLITIFDRKALYNE 65
           VV  +   AR +    E+AQVGT +ANG+  IG+ IA+  ++     +IT+ + K +  E
Sbjct: 127 VVEAIKSAARPVNDSSEVAQVGTISANGESFIGQQIAEAMQRVGNEGVITVEENKGMETE 186
Query: 66  LNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQASLPCM---MQ 122
           +  V+GM+ + G  SPYF T+ +K    L+ A +L+++ K+S+     Q  +P +   +Q
Sbjct: 187 VEVVEGMQFDRGYLSPYFVTNADKMIAELEDAYILLHEKKLSS----LQPMVPLLESVIQ 242
Query: 123 GQ-SLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLT 181
            Q  LL+VAEDVE E L  +  +      K+  +KA G  + RKA+++D+AILTGGQV++
Sbjct: 243 SQKPLLIVAEDVEGEALATLVVNKLRGGLKIAAVKAPGFGDRRKAMLQDIAILTGGQVIS 302
Query: 182 GGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSD--- 238
              GM         LG  K+V    DN  I+ G+GE  +I+ R  Q+R  I+ +TSD   
Sbjct: 303 EDLGMKLENVTIDMLGRAKKVSINKDNTTIVDGAGEKAEIEARVSQIRQQIEETTSDYDR 362
Query: 239 -KLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEGIVPGSGVALLYA 297
            KL++R+AKL+GG AV++V G  + EV+E+K ++ +AL+A +AA +EGIV G GVAL+  
Sbjct: 363 EKLQERVAKLAGGVAVIRVGGMTEIEVKERKDRVDDALNATRAAVQEGIVVGGGVALVQG 422
Query: 298 SKELDKLQTTNSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLEQDSSDLGYNPA 356
           +K L+ L   NSDQ  G+ I++ AL+     IA NAGVDG+V+  K+ E      G+N  
Sbjct: 423 AKVLEGLSGANSDQDAGIAIIRRALEAPMRQIAENAGVDGAVVAGKVRESSDKAFGFNAQ 482
Query: 357 RGNYVDMFKCGDVDPLKHVPSEFAKATSMISL 388
              Y DMFK G +DP K V +    A S+  L
Sbjct: 483 TEEYGDMFKFGVIDPAKVVRTALEDAASVAGL 514
>pdb|1WE3|A Chain A, Crystal Structure Of The Chaperonin Complex Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS Length = 543 Back     alignment and structure
>pdb|1PCQ|A Chain A, Crystal Structure Of Groel-Groes Length = 524 Back     alignment and structure
>pdb|2YEY|A Chain A, Crystal Structure Of The Allosteric-Defective Chaperonin Groel E434k Mutant Length = 524 Back     alignment and structure
>pdb|1KP8|A Chain A, Structural Basis For Groel-Assisted Protein Folding From The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A Resolution Length = 547 Back     alignment and structure
>pdb|1AON|A Chain A, Crystal Structure Of The Asymmetric Chaperonin Complex GroelGROES(ADP)7 Length = 547 Back     alignment and structure
>pdb|3C9V|A Chain A, C7 Symmetrized Structure Of Unliganded Groel At 4.7 Angstrom Resolution From Cryoem Length = 526 Back     alignment and structure
>pdb|1SS8|A Chain A, Groel Length = 524 Back     alignment and structure
>pdb|1GR5|A Chain A, Solution Structure Of Apo Groel By Cryo-Electron Microscopy Length = 547 Back     alignment and structure
>pdb|1SX3|A Chain A, Groel14-(Atpgammas)14 Length = 525 Back     alignment and structure
>pdb|1J4Z|A Chain A, Structural And Mechanistic Basis For Allostery In The Bacterial Chaperonin Groel; See Remark 400 Length = 547 Back     alignment and structure
>pdb|2EU1|A Chain A, Crystal Structure Of The Chaperonin Groel-E461k Length = 548 Back     alignment and structure
>pdb|4AAQ|A Chain A, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel Length = 548 Back     alignment and structure
>pdb|3CAU|A Chain A, D7 Symmetrized Structure Of Unliganded Groel At 4.2 Angstrom Resolution By Cryoem Length = 526 Back     alignment and structure
>pdb|1OEL|A Chain A, Conformational Variability In The Refined Structure Of The Chaperonin Groel At 2.8 Angstrom Resolution Length = 547 Back     alignment and structure
>pdb|1GRL|A Chain A, The Crystal Structure Of The Bacterial Chaperonin Groel At 2.8 Angstroms Length = 548 Back     alignment and structure
>pdb|3RTK|A Chain A, Crystal Structure Of Cpn60.2 From Mycobacterium Tuberculosis At 2.8a Length = 546 Back     alignment and structure
>pdb|1SJP|A Chain A, Mycobacterium Tuberculosis Chaperonin60.2 Length = 504 Back     alignment and structure
>pdb|1LA1|A Chain A, Gro-El Fragment (Apical Domain) Comprising Residues 188-379 Length = 192 Back     alignment and structure
>pdb|1FY9|A Chain A, Crystal Structure Of The Hexa-Substituted Mutant Of The Molecular Chaperonin Groel Apical Domain Length = 193 Back     alignment and structure
>pdb|1FYA|A Chain A, Crystal Structure Of The Hexa-Substituted Mutant Of The Molecular Chaperonin Groel Apical Domain Length = 193 Back     alignment and structure
>pdb|3M6C|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Groel1 Apical Domain Length = 194 Back     alignment and structure
>pdb|1KID|A Chain A, Groel (Hsp60 Class) Fragment (Apical Domain) Comprising Residues 191-376, Mutant With Ala 262 Replaced With Leu And Ile 267 Replaced With Met Length = 203 Back     alignment and structure
>pdb|3OSX|A Chain A, Crystal Structure Of Apical Domain Of Insecticidal Groel From Xenorhapdus Nematophila Length = 201 Back     alignment and structure
>pdb|1JON|A Chain A, Groel (Hsp60 Class) Fragment Comprising Residues 191-345 Length = 155 Back     alignment and structure
>pdb|1DK7|A Chain A, Crystal Structure Of An Isolated Apical Domain Of Groel Length = 146 Back     alignment and structure
>pdb|1SRV|A Chain A, Thermus Thermophilus Groel (Hsp60 Class) Fragment (Apical Domain) Comprising Residues 192-336 Length = 145 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query392
1iok_A545 Chaperonin 60; chaperone; 3.20A {Paracoccus denitr 1e-116
1kp8_A547 Groel protein; chaperonin, assisted protein foldin 1e-113
3rtk_A546 60 kDa chaperonin 2; heat shock protein, chaperone 1e-110
1we3_A543 CPN60(groel); chaperonin, chaperone, groel, HSP60, 1e-109
3m6c_A194 60 kDa chaperonin 1; chaperone, ATP-binding, nucle 4e-48
3osx_A201 60 kDa chaperonin; alpha, beta, apical domain, cha 4e-48
1srv_A145 Protein (groel (HSP60 class)); chaperone, cell div 5e-29
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-06
>1iok_A Chaperonin 60; chaperone; 3.20A {Paracoccus denitrificans} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 Length = 545 Back     alignment and structure
 Score =  348 bits (895), Expect = e-116
 Identities = 152/397 (38%), Positives = 231/397 (58%), Gaps = 13/397 (3%)

Query: 1   MAADAVVRNLDCQARKITTFEEIAQVGTTAANGDGEIGELIAKVFEKGWENDLITIFDRK 60
           +A   VV  +   AR +    E+AQVGT +ANG+  IG+ IA+  ++     +IT+ + K
Sbjct: 122 VATAKVVEAIKSAARPVNDSSEVAQVGTISANGESFIGQQIAEAMQRVGNEGVITVEENK 181

Query: 61  ALYNELNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQASLPC- 119
            +  E+  V+GM+ + G  SPYF T+ +K    L+ A +L+++ K+S+     Q  +P  
Sbjct: 182 GMETEVEVVEGMQFDRGYLSPYFVTNADKMIAELEDAYILLHEKKLSSL----QPMVPLL 237

Query: 120 ---MMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTG 176
              +   + LL+VAEDVE E L  +  +      K+  +KA G  + RKA+++D+AILTG
Sbjct: 238 ESVIQSQKPLLIVAEDVEGEALATLVVNKLRGGLKIAAVKAPGFGDRRKAMLQDIAILTG 297

Query: 177 GQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLST 236
           GQV++   GM         LG  K+V    DN  I+ G+GE  +I+ R  Q+R  I+ +T
Sbjct: 298 GQVISEDLGMKLENVTIDMLGRAKKVSINKDNTTIVDGAGEKAEIEARVSQIRQQIEETT 357

Query: 237 SD----KLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEGIVPGSGV 292
           SD    KL++R+AKL+GG AV++V G  + EV+E+K ++ +AL+A +AA +EGIV G GV
Sbjct: 358 SDYDREKLQERVAKLAGGVAVIRVGGMTEIEVKERKDRVDDALNATRAAVQEGIVVGGGV 417

Query: 293 ALLYASKELDKLQTTNSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLEQDSSDL 351
           AL+  +K L+ L   NSDQ  G+ I++ AL+     IA NAGVDG+V+  K+ E      
Sbjct: 418 ALVQGAKVLEGLSGANSDQDAGIAIIRRALEAPMRQIAENAGVDGAVVAGKVRESSDKAF 477

Query: 352 GYNPARGNYVDMFKCGDVDPLKHVPSEFAKATSMISL 388
           G+N     Y DMFK G +DP K V +    A S+  L
Sbjct: 478 GFNAQTEEYGDMFKFGVIDPAKVVRTALEDAASVAGL 514
>1kp8_A Groel protein; chaperonin, assisted protein folding, chaperone; HET: ATP; 2.00A {Escherichia coli} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1gr5_A 2c7e_A* 1grl_A 1oel_A 1xck_A 1gru_A 1mnf_A 1aon_A 2c7c_A 2c7d_A 2cgt_A 2nwc_A 3e76_A* 2eu1_A 1j4z_A 1kpo_O 1sx3_A* 3c9v_A 1ss8_A 3cau_A ... Length = 547 Back     alignment and structure
>3rtk_A 60 kDa chaperonin 2; heat shock protein, chaperone; 2.80A {Mycobacterium tuberculosis} PDB: 1sjp_A Length = 546 Back     alignment and structure
>1we3_A CPN60(groel); chaperonin, chaperone, groel, HSP60, HSP10, folding, ADP, ATP; HET: ADP; 2.80A {Thermus thermophilus} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1wf4_a* Length = 543 Back     alignment and structure
>3m6c_A 60 kDa chaperonin 1; chaperone, ATP-binding, nucleotide-binding; 2.20A {Mycobacterium tuberculosis} Length = 194 Back     alignment and structure
>3osx_A 60 kDa chaperonin; alpha, beta, apical domain, chaperone; 1.55A {Xenorhabdus nematophila} PDB: 1kid_A 1fy9_A 1la1_A 1fya_A 1jon_A 1dk7_A 1dkd_A Length = 201 Back     alignment and structure
>1srv_A Protein (groel (HSP60 class)); chaperone, cell division, ATP-binding, phosphorylation; 1.70A {Thermus thermophilus} SCOP: c.8.5.1 Length = 145 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query392
3rtk_A546 60 kDa chaperonin 2; heat shock protein, chaperone 100.0
1kp8_A547 Groel protein; chaperonin, assisted protein foldin 100.0
1we3_A543 CPN60(groel); chaperonin, chaperone, groel, HSP60, 100.0
1iok_A545 Chaperonin 60; chaperone; 3.20A {Paracoccus denitr 100.0
3p9d_C590 T-complex protein 1 subunit gamma; HSP60, eukaryot 100.0
3ruv_A543 Chaperonin, CPN; double-ring, protein folding mach 100.0
3iyg_H515 T-complex protein 1 subunit ETA; TRIC/CCT, asymmet 100.0
3ko1_A553 Chaperonin; 9-fold symmetry, double ring, ATP hydr 100.0
3aq1_B500 Thermosome subunit; group II chaperonin, protein f 100.0
3p9d_A559 T-complex protein 1 subunit alpha; HSP60, eukaryot 100.0
1q3q_A548 Thermosome alpha subunit; chaperone, chaperonin; H 100.0
3iyg_B513 T-complex protein 1 subunit beta; TRIC/CCT, asymme 100.0
1a6d_A545 Thermosome (alpha subunit); group II chaperonin, C 100.0
3iyg_A529 T-complex protein 1 subunit alpha; TRIC/CCT, asymm 100.0
1a6d_B543 Thermosome (beta subunit); group II chaperonin, CC 100.0
3iyg_E515 T-complex protein 1 subunit; TRIC/CCT, asymmetric, 100.0
3p9d_D528 T-complex protein 1 subunit delta; HSP60, eukaryot 100.0
3iyg_D518 T-complex protein 1 subunit delta; TRIC/CCT, asymm 100.0
3p9d_B527 T-complex protein 1 subunit beta; HSP60, eukaryoti 100.0
3p9d_G550 T-complex protein 1 subunit ETA; HSP60, eukaryotic 100.0
3iyg_Q512 T-complex protein 1 subunit theta; TRIC/CCT, asymm 100.0
3p9d_E562 T-complex protein 1 subunit epsilon; HSP60, eukary 100.0
3iyg_G515 T-complex protein 1 subunit gamma; TRIC/CCT, asymm 100.0
3iyg_Z517 T-complex protein 1 subunit zeta; TRIC/CCT, asymme 100.0
3p9d_F546 T-complex protein 1 subunit zeta; HSP60, eukaryoti 100.0
3p9d_H568 T-complex protein 1 subunit theta; HSP60, eukaryot 100.0
3m6c_A194 60 kDa chaperonin 1; chaperone, ATP-binding, nucle 100.0
3osx_A201 60 kDa chaperonin; alpha, beta, apical domain, cha 100.0
1srv_A145 Protein (groel (HSP60 class)); chaperone, cell div 100.0
1gml_A178 T-complex protein 1 subunit gamma; chaperone, chap 99.92
1ass_A159 Thermosome; chaperonin, HSP60, TCP1, groel, thermo 99.86
>3rtk_A 60 kDa chaperonin 2; heat shock protein, chaperone; 2.80A {Mycobacterium tuberculosis} PDB: 1sjp_A Back     alignment and structure
Probab=100.00  E-value=3.3e-92  Score=730.12  Aligned_cols=389  Identities=34%  Similarity=0.513  Sum_probs=377.6

Q ss_pred             ChHHHHHHHHhcccccCCCHHHHHHHHHHhcCCchhHHHHHHHHHHhhccCceEEEEcCCCccceeEEEeeEEEeccccc
Q 016246            1 MAADAVVRNLDCQARKITTFEEIAQVGTTAANGDGEIGELIAKVFEKGWENDLITIFDRKALYNELNFVKGMKLEWGLKS   80 (392)
Q Consensus         1 ~A~~~~l~~L~~~a~~v~~~~~l~~Va~ts~~~~~~~~~li~~a~~~vg~~g~I~v~~g~~~~~~~~~v~G~~~d~g~~s   80 (392)
                      +|++.++++|+++++|+++.++|.+||+||++ ++.+++++++|+.+|+.+|.|+|+.+++..+++++++||+||++|+|
T Consensus       121 ~A~~~a~e~L~~~s~~v~~~e~L~~vA~iS~~-~~~i~~liadAv~~V~~dgvI~Ve~~~~~~~ds~lveGm~fdkg~~s  199 (546)
T 3rtk_A          121 KAVEKVTETLLKGAKEVETKEQIAATAAISAG-DQSIGDLIAEAMDKVGNEGVITVEESNTFGLQLELTEGMRFDKGYIS  199 (546)
T ss_dssp             HHHHHHHHHHHHTCBCCCSHHHHHHHHHHHHT-CHHHHHHHHHHHHHSCTTSEEEEECCSSSSCEEEEECEEEESCCBSS
T ss_pred             HHHHHHHHHHHHhcccCCChHHHHhHeEEeCC-chHHHHHHHHHHHHhccCCceEEEecCCcccceEEeeeEEEcCCccC
Confidence            47899999999999999999999999999999 88999999999999999999999988877788999999999999999


Q ss_pred             ccccccccccceeecCceeeecccccCCHHHHHHHHHHHHhcCCCEEEEecCcchhhhhhHHhhccCCCceEEEEeccCC
Q 016246           81 PYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGL  160 (392)
Q Consensus        81 ~~~~~~~~~~~~~l~~~~Il~~d~~i~~~~~~~~~l~~i~~~g~~lvi~~~~i~~~al~~L~~n~~~~~~~i~avr~~~~  160 (392)
                      |||+|+|++|..+++||||+++|++|+++++++|++++++++|+||||++++|++++|++|+.|+++|++++++||+|+|
T Consensus       200 p~~vt~~e~m~~~len~kIll~d~kIs~~~~l~~~le~I~~~g~~lvIi~~~I~~~Al~~L~~n~lrg~~~v~aVk~~~~  279 (546)
T 3rtk_A          200 GYFVTDPERQEAVLEDPYILLVSSKVSTVKDLLPLLEKVIGAGKPLLIIAEDVEGEALSTLVVNKIRGTFKSVAVKAPGF  279 (546)
T ss_dssp             GGGCSBTTTTBEEEESCEEEEBSSEECCSTTTHHHHHHHHTTTCCEEEEESEECHHHHHHHHHHHHHSSCCEEEEECSSC
T ss_pred             cccccCcccCeeEecccEEEEECCccCCHHHHHHHHHHHHhcCCCEEEEcCCCCHHHHHHHHHhCCCCceEEEEeccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccchhhHHHHHHHHhCCeEecCCCCCCcCCCCCCCceeeeEEEEecceEEEEcCCCChhhHHHHHHHHHHHhhhccc---
Q 016246          161 AEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTS---  237 (392)
Q Consensus       161 g~~rk~~ledla~~tGa~i~s~~~~~~~~~~~~~~LG~~~~v~i~~~~~~~~~g~~~~~~i~~r~~~l~~~l~~~~s---  237 (392)
                      |+.|+++|+|||++|||++++++.+++++++++++||+|++|++++++|+||+||++++++..|++||+++++.++|   
T Consensus       280 ~~~rk~~le~ia~~tG~~ii~~~~~~~l~~~~~~~LG~a~~v~i~~d~~~~i~g~~~~~~i~~r~~~i~~~~~~~~s~~~  359 (546)
T 3rtk_A          280 GDRRKAMLQDMAILTGGQVISEEVGLTLENADLSLLGKARKVVVTKDETTIVEGAGDTDAIAGRVAQIRQEIENSDSDYD  359 (546)
T ss_dssp             HHHHHHHHHHHHHHHTCCCBCSSSSCCSTTCCTTTSEEEEEEEECSSCEEEEEECSCHHHHHHHHHHHHHHHHTCSCHHH
T ss_pred             cccchhhHHHHHHHhCCEEeeccccCccccCCHhhCCeeEEEEEcCCeEEEEcCCCCHHHHHHHHHHHHHHHhhccchhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999988   


Q ss_pred             -HHHHHHHhhhcCCeeEEEEcCCcHhHHHhHHHHHHHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHhcCCChhHHHHHH
Q 016246          238 -DKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEGIVPGSGVALLYASKELDKLQTTNSDQKIGVQ  316 (392)
Q Consensus       238 -~~l~~Rla~l~g~~~tI~vrG~t~~~l~E~~r~i~DAl~a~r~al~~gvVpGGGa~e~~~s~~L~~~~~~~~~~q~g~~  316 (392)
                       ++|+|||++|+|++|||+|||+|+++++|+||+++||||++|+++++|+|||||++|++++.+|++++ .++++|+|++
T Consensus       360 ~ekl~erlakl~g~~atI~vrG~te~~l~E~er~l~DAl~a~r~av~~giVpGGGa~e~~~s~~L~~~~-~~g~eq~~i~  438 (546)
T 3rtk_A          360 REKLQERLAKLAGGVAVIKAGAATEVELKERKHRIEDAVRNAKAAVEEGIVAGGGVTLLQAAPTLDELK-LEGDEATGAN  438 (546)
T ss_dssp             HHHHHHHHHHHHHCEEEEECCCCSSTHHHHHHHHHHHHHHHHHHHHHHCEEETTTHHHHTTGGGSTTSC-CCTTHHHHHH
T ss_pred             HHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHhCCcccCCcHHHHHHHHHHHHhc-cccHHHHHHH
Confidence             99999999999999999999999999999999999999999999999999999999999999999887 7889999999


Q ss_pred             HHHHHHHHHHHHHHHhcCCChHHH-HHHHhcCCCCeeEeCCCCccccccccCCccccccHHHHHHHHHHHHHHHhcC
Q 016246          317 IVQNALKMAAYLIASNAGVDGSVI-DKLLEQDSSDLGYNPARGNYVDMFKCGDVDPLKHVPSEFAKATSMISLKNAI  392 (392)
Q Consensus       317 ~~a~AL~~~p~~La~NaG~d~~~v-~~l~~~~~~~~G~d~~~g~~~dm~~~gI~Dp~~v~~~al~~A~~~a~~iL~i  392 (392)
                      +|++||+.||++||+|||+|+.++ ++|++. ..++|||+.+|+|.||++.|||||+.||+++|++|+|+|++||+|
T Consensus       439 ~~a~ALe~ip~~La~NaG~d~~~vv~~l~~~-~~~~G~d~~~g~~~Dm~~~gI~dp~~vk~~al~~A~e~A~~iL~i  514 (546)
T 3rtk_A          439 IVKVALEAPLKQIAFNSGLEPGVVAEKVRNL-PAGHGLNAQTGVYEDLLAAGVADPVKVTRSALQNAASIAGLFLTT  514 (546)
T ss_dssp             HHHHHTTHHHHHHHTTTTCCHHHHHHHHHHS-CTTEECCSSSCCCEETTTTTCEEEHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHcCCCHHHHHHHHHhh-cCCEeEcCCCCcEeeHHHcCCEecHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999 999885 356999999999999999999999999999999999999999986
>1kp8_A Groel protein; chaperonin, assisted protein folding, chaperone; HET: ATP; 2.00A {Escherichia coli} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1gr5_A 2c7e_A* 1grl_A 1oel_A 1xck_A 1gru_A 1mnf_A 1aon_A 2c7c_A 2c7d_A 2cgt_A 2nwc_A 3e76_A* 2eu1_A 1j4z_A 1kpo_O 1sx3_A* 3c9v_A 1ss8_A 3cau_A ... Back     alignment and structure
>1we3_A CPN60(groel); chaperonin, chaperone, groel, HSP60, HSP10, folding, ADP, ATP; HET: ADP; 2.80A {Thermus thermophilus} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1wf4_a* Back     alignment and structure
>1iok_A Chaperonin 60; chaperone; 3.20A {Paracoccus denitrificans} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 Back     alignment and structure
>3p9d_C T-complex protein 1 subunit gamma; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_c* 4d8q_C* 4d8r_c* 2bbm_B 2bbn_B Back     alignment and structure
>3ruv_A Chaperonin, CPN; double-ring, protein folding machinery, group II chaperonin, binding, chaperone; HET: ANP; 2.24A {Methanococcus maripaludis} PDB: 3rus_A* 3ruw_A* 3ruq_A* 3los_A 3kfb_A* 3izi_A 3izj_A 3izm_A 3izh_A 3kfe_A* 3iyf_A* 3kfk_A* 3izk_A 3izl_A 3j03_A 3izn_A 3j02_A Back     alignment and structure
>3iyg_H T-complex protein 1 subunit ETA; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3ko1_A Chaperonin; 9-fold symmetry, double ring, ATP hydrolase, chaperone, NUCL binding; HET: ADP; 3.70A {Acidianus tengchongensis} Back     alignment and structure
>3aq1_B Thermosome subunit; group II chaperonin, protein folding, chaperone; 2.75A {Methanococcoides burtonii} Back     alignment and structure
>3p9d_A T-complex protein 1 subunit alpha; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_a* 4d8q_A* 4d8r_a* Back     alignment and structure
>1q3q_A Thermosome alpha subunit; chaperone, chaperonin; HET: ANP; 2.30A {Thermococcus SP} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1q2v_A* 1q3s_A* 1q3r_A Back     alignment and structure
>3iyg_B T-complex protein 1 subunit beta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} PDB: 3ktt_B 4a0o_A 4a0v_A 4a0w_A 4a13_A Back     alignment and structure
>1a6d_A Thermosome (alpha subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_A* Back     alignment and structure
>3iyg_A T-complex protein 1 subunit alpha; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>1a6d_B Thermosome (beta subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_B* 1e0r_B Back     alignment and structure
>3iyg_E T-complex protein 1 subunit; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3p9d_D T-complex protein 1 subunit delta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_d* 4d8q_D* 4d8r_d* Back     alignment and structure
>3iyg_D T-complex protein 1 subunit delta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3p9d_B T-complex protein 1 subunit beta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_b* 4d8q_B* 4d8r_b* Back     alignment and structure
>3p9d_G T-complex protein 1 subunit ETA; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_g* 4d8q_G* 4d8r_g* Back     alignment and structure
>3iyg_Q T-complex protein 1 subunit theta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3p9d_E T-complex protein 1 subunit epsilon; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_e* 4d8q_E* 4d8r_e* Back     alignment and structure
>3iyg_G T-complex protein 1 subunit gamma; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3iyg_Z T-complex protein 1 subunit zeta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3p9d_F T-complex protein 1 subunit zeta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_f* 4d8q_F* 4d8r_f* Back     alignment and structure
>3p9d_H T-complex protein 1 subunit theta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_h* 4d8q_H* 4d8r_h* Back     alignment and structure
>3m6c_A 60 kDa chaperonin 1; chaperone, ATP-binding, nucleotide-binding; 2.20A {Mycobacterium tuberculosis} Back     alignment and structure
>3osx_A 60 kDa chaperonin; alpha, beta, apical domain, chaperone; 1.55A {Xenorhabdus nematophila} SCOP: c.8.5.1 PDB: 1kid_A 1fy9_A 1la1_A 1fya_A 1jon_A 1dk7_A 1dkd_A Back     alignment and structure
>1srv_A Protein (groel (HSP60 class)); chaperone, cell division, ATP-binding, phosphorylation; 1.70A {Thermus thermophilus} SCOP: c.8.5.1 Back     alignment and structure
>1gml_A T-complex protein 1 subunit gamma; chaperone, chaperonin, actin, tubulin; 2.2A {Mus musculus} SCOP: c.8.5.2 PDB: 1gn1_A Back     alignment and structure
>1ass_A Thermosome; chaperonin, HSP60, TCP1, groel, thermoplasma ACI ATP-binding; 2.30A {Thermoplasma acidophilum} SCOP: c.8.5.2 PDB: 1asx_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 392
d1kida_193 c.8.5.1 (A:) GroEL, A domain {Escherichia coli [Ta 3e-50
d1sjpa2184 c.8.5.1 (A:189-372) GroEL, A domain {Mycobacterium 1e-46
d1ioka2176 c.8.5.1 (A:191-366) GroEL, A domain {Paracoccus de 7e-46
d1srva_145 c.8.5.1 (A:) GroEL, A domain {Thermus thermophilus 2e-34
d1ioka1252 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Par 1e-19
d1sjpa389 d.56.1.1 (A:135-188,A:373-407) GroEL, I domain {My 5e-18
d1kp8a1252 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Esc 3e-14
d1kp8a1252 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Esc 5e-08
d1we3a386 d.56.1.1 (A:139-189,A:374-408) GroEL, I domain {Th 6e-13
d1we3a1255 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {The 1e-09
d1we3a1255 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {The 1e-04
d1kp8a397 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Es 5e-08
d1kp8a397 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Es 1e-04
d1sjpa1180 a.129.1.1 (A:62-134,A:408-514) GroEL, E domain {My 7e-08
d1ioka397 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Pa 3e-07
d1ioka397 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Pa 1e-04
d1a6db1243 a.129.1.2 (B:20-144,B:404-521) Thermosome, E domai 6e-05
d1a6da1245 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domai 7e-05
>d1kida_ c.8.5.1 (A:) GroEL, A domain {Escherichia coli [TaxId: 562]} Length = 193 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: The "swivelling" beta/beta/alpha domain
superfamily: GroEL apical domain-like
family: GroEL-like chaperone, apical domain
domain: GroEL, A domain
species: Escherichia coli [TaxId: 562]

 Score =  165 bits (420), Expect = 3e-50
 Identities = 69/190 (36%), Positives = 97/190 (51%), Gaps = 4/190 (2%)

Query: 65  ELNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQASLPCMMQGQ 124
                +GM+ + G  SPYF          L+   +L+ D KISN   +          G+
Sbjct: 3   VPRGSEGMQFDRGYLSPYFINKPETGAVELESPFILLADKKISNIREMLPVLEAVAKAGK 62

Query: 125 SLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGS 184
            LL++AEDVE E L  +  +      KV  +KA G  + RKA+++D+A LTGG V++   
Sbjct: 63  PLLIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIATLTGGTVISEEI 122

Query: 185 GMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSD----KL 240
           GM         LG  KRV+   D   II G GE   IQ R  Q+R  I+ +TSD    KL
Sbjct: 123 GMELEKATLEDLGQAKRVVINKDTTTIIDGVGEEAAIQGRVAQIRQQIEEATSDYDREKL 182

Query: 241 KDRLAKLSGG 250
           ++R+AKL+GG
Sbjct: 183 QERVAKLAGG 192
>d1sjpa2 c.8.5.1 (A:189-372) GroEL, A domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Length = 184 Back     information, alignment and structure
>d1ioka2 c.8.5.1 (A:191-366) GroEL, A domain {Paracoccus denitrificans [TaxId: 266]} Length = 176 Back     information, alignment and structure
>d1srva_ c.8.5.1 (A:) GroEL, A domain {Thermus thermophilus [TaxId: 274]} Length = 145 Back     information, alignment and structure
>d1ioka1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Paracoccus denitrificans [TaxId: 266]} Length = 252 Back     information, alignment and structure
>d1sjpa3 d.56.1.1 (A:135-188,A:373-407) GroEL, I domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Length = 89 Back     information, alignment and structure
>d1kp8a1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Escherichia coli [TaxId: 562]} Length = 252 Back     information, alignment and structure
>d1kp8a1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Escherichia coli [TaxId: 562]} Length = 252 Back     information, alignment and structure
>d1we3a3 d.56.1.1 (A:139-189,A:374-408) GroEL, I domain {Thermus thermophilus [TaxId: 274]} Length = 86 Back     information, alignment and structure
>d1we3a1 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {Thermus thermophilus [TaxId: 274]} Length = 255 Back     information, alignment and structure
>d1we3a1 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {Thermus thermophilus [TaxId: 274]} Length = 255 Back     information, alignment and structure
>d1kp8a3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Escherichia coli [TaxId: 562]} Length = 97 Back     information, alignment and structure
>d1kp8a3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Escherichia coli [TaxId: 562]} Length = 97 Back     information, alignment and structure
>d1sjpa1 a.129.1.1 (A:62-134,A:408-514) GroEL, E domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Length = 180 Back     information, alignment and structure
>d1ioka3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Paracoccus denitrificans [TaxId: 266]} Length = 97 Back     information, alignment and structure
>d1ioka3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Paracoccus denitrificans [TaxId: 266]} Length = 97 Back     information, alignment and structure
>d1a6db1 a.129.1.2 (B:20-144,B:404-521) Thermosome, E domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Length = 243 Back     information, alignment and structure
>d1a6da1 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Length = 245 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query392
d1kida_193 GroEL, A domain {Escherichia coli [TaxId: 562]} 100.0
d1sjpa2184 GroEL, A domain {Mycobacterium tuberculosis, GroEL 100.0
d1ioka2176 GroEL, A domain {Paracoccus denitrificans [TaxId: 100.0
d1srva_145 GroEL, A domain {Thermus thermophilus [TaxId: 274] 100.0
d1a6db1243 Thermosome, E domain {Archaeon Thermoplasma acidop 99.94
d1we3a1255 GroEL, E domain {Thermus thermophilus [TaxId: 274] 99.92
d1ioka1252 GroEL, E domain {Paracoccus denitrificans [TaxId: 99.92
d1a6da1245 Thermosome, E domain {Archaeon Thermoplasma acidop 99.9
d1sjpa1180 GroEL, E domain {Mycobacterium tuberculosis, GroEL 99.88
d1gmla_168 Thermosome, A-domain {Mouse (Mus musculus), gamma 99.86
d1kp8a1252 GroEL, E domain {Escherichia coli [TaxId: 562]} 99.84
d1q3qa2153 Thermosome, A-domain {Archaeon Thermococcus sp. ks 99.83
d1assa_152 Thermosome, A-domain {Archaeon Thermoplasma acidop 99.83
d1a6db2152 Thermosome, A-domain {Archaeon Thermoplasma acidop 99.83
d1q3qa1258 Thermosome, E domain {Archaeon Thermococcus sp. ks 99.79
d1sjpa389 GroEL, I domain {Mycobacterium tuberculosis, GroEL 99.73
d1we3a386 GroEL, I domain {Thermus thermophilus [TaxId: 274] 99.57
d1kp8a397 GroEL, I domain {Escherichia coli [TaxId: 562]} 99.55
d1ioka397 GroEL, I domain {Paracoccus denitrificans [TaxId: 99.52
d1q3qa3107 Thermosome, I domain {Archaeon Thermococcus sp. ks 98.48
d1a6da3105 Thermosome, I domain {Archaeon Thermoplasma acidop 98.47
d1a6db3107 Thermosome, I domain {Archaeon Thermoplasma acidop 98.37
d1ioka397 GroEL, I domain {Paracoccus denitrificans [TaxId: 98.07
d1kp8a1252 GroEL, E domain {Escherichia coli [TaxId: 562]} 97.72
d1kp8a397 GroEL, I domain {Escherichia coli [TaxId: 562]} 97.58
d1we3a1255 GroEL, E domain {Thermus thermophilus [TaxId: 274] 96.6
d1ioka1252 GroEL, E domain {Paracoccus denitrificans [TaxId: 96.0
d1q3qa1258 Thermosome, E domain {Archaeon Thermococcus sp. ks 95.31
>d1kida_ c.8.5.1 (A:) GroEL, A domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: The "swivelling" beta/beta/alpha domain
superfamily: GroEL apical domain-like
family: GroEL-like chaperone, apical domain
domain: GroEL, A domain
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=8.1e-47  Score=339.52  Aligned_cols=186  Identities=37%  Similarity=0.553  Sum_probs=181.3

Q ss_pred             eEEEeeEEEecccccccccccccccceeecCceeeecccccCCHHHHHHHHHHHHhcCCCEEEEecCcchhhhhhHHhhc
Q 016246           66 LNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDF  145 (392)
Q Consensus        66 ~~~v~G~~~d~g~~s~~~~~~~~~~~~~l~~~~Il~~d~~i~~~~~~~~~l~~i~~~g~~lvi~~~~i~~~al~~L~~n~  145 (392)
                      .++++||.||+||.||||+|++++++++++||+||++|.+|++.++++|+|+.+.+.++||||+|++|+++||++|+.|+
T Consensus         4 ~~~tEG~~~d~Gy~SpyFvtd~~~~~~~l~~p~ILitd~kI~~~~~i~p~Le~~~~~~~pLlIIA~di~~~aL~~Lv~N~   83 (193)
T d1kida_           4 PRGSEGMQFDRGYLSPYFINKPETGAVELESPFILLADKKISNIREMLPVLEAVAKAGKPLLIIAEDVEGEALATLVVNT   83 (193)
T ss_dssp             CSCCCCEEESCCCSCGGGCCBTTTTBEEEESCEEEEBSSEECCHHHHHHHHHHHHHHTCCEEEEESEECHHHHHHHHHHH
T ss_pred             ccccCCeeecCCcCCccceeCCCCCEEEecCcEEEEEcCCcccHHHHHHHHHHHHhhCCcEEEEeccccHHHHHHHHHhh
Confidence            56789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCceEEEEeccCCccchhhHHHHHHHHhCCeEecCCCCCCcCCCCCCCceeeeEEEEecceEEEEcCCCChhhHHHHH
Q 016246          146 TCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERC  225 (392)
Q Consensus       146 ~~~~~~i~avr~~~~g~~rk~~ledla~~tGa~i~s~~~~~~~~~~~~~~LG~~~~v~i~~~~~~~~~g~~~~~~i~~r~  225 (392)
                      ++|.++|||||+||||++|++.|+|||.+|||++++++.|.++++++.++||+|++|++++++|++++|.++++.+++|+
T Consensus        84 ~kg~l~v~aVkaPgfG~~r~~~LeDlA~~TGa~vi~~~~g~~l~~~~~~~LG~~~kv~itk~~T~ii~g~g~~~~I~~Ri  163 (193)
T d1kida_          84 MRGIVKVAAVKAPGFGDRRKAMLQDIATLTGGTVISEEIGMELEKATLEDLGQAKRVVINKDTTTIIDGVGEEAAIQGRV  163 (193)
T ss_dssp             HTTSCCEEEEECCSCHHHHHHHHHHHHHHHTCCCBCGGGTCCGGGCCGGGCEEEEEEEECSSCEEEEEECCCHHHHHHHH
T ss_pred             hccCcceeeccCCCcChhHHHHHHHHHHHcCCEEechhcccccccCCHhHcCcccEEEEecCceEEEcCCCCHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhccc----HHHHHHHhhhcCCe
Q 016246          226 EQLRSTIKLSTS----DKLKDRLAKLSGGY  251 (392)
Q Consensus       226 ~~l~~~l~~~~s----~~l~~Rla~l~g~~  251 (392)
                      ++|+.+++.+++    ++|++|||||+||+
T Consensus       164 ~~Lk~~l~~~~~~~~~e~L~eRlakLsGGV  193 (193)
T d1kida_         164 AQIRQQIEEATSDYDREKLQERVAKLAGGV  193 (193)
T ss_dssp             HHHHHHHHHCCSHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHcCCC
Confidence            999999998876    89999999999975
>d1sjpa2 c.8.5.1 (A:189-372) GroEL, A domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Back     information, alignment and structure
>d1ioka2 c.8.5.1 (A:191-366) GroEL, A domain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1srva_ c.8.5.1 (A:) GroEL, A domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1a6db1 a.129.1.2 (B:20-144,B:404-521) Thermosome, E domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Back     information, alignment and structure
>d1we3a1 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1ioka1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1a6da1 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Back     information, alignment and structure
>d1sjpa1 a.129.1.1 (A:62-134,A:408-514) GroEL, E domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Back     information, alignment and structure
>d1gmla_ c.8.5.2 (A:) Thermosome, A-domain {Mouse (Mus musculus), gamma chain [TaxId: 10090]} Back     information, alignment and structure
>d1kp8a1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1q3qa2 c.8.5.2 (A:217-369) Thermosome, A-domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Back     information, alignment and structure
>d1assa_ c.8.5.2 (A:) Thermosome, A-domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Back     information, alignment and structure
>d1a6db2 c.8.5.2 (B:216-367) Thermosome, A-domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Back     information, alignment and structure
>d1q3qa1 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Back     information, alignment and structure
>d1sjpa3 d.56.1.1 (A:135-188,A:373-407) GroEL, I domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Back     information, alignment and structure
>d1we3a3 d.56.1.1 (A:139-189,A:374-408) GroEL, I domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1kp8a3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ioka3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1q3qa3 d.56.1.2 (A:146-216,A:370-405) Thermosome, I domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Back     information, alignment and structure
>d1a6da3 d.56.1.2 (A:146-214,A:368-403) Thermosome, I domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Back     information, alignment and structure
>d1a6db3 d.56.1.2 (B:145-215,B:368-403) Thermosome, I domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Back     information, alignment and structure
>d1ioka3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1kp8a1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1kp8a3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1we3a1 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1ioka1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1q3qa1 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Back     information, alignment and structure