Citrus Sinensis ID: 016265

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390--
Protein Sequence
METILTTTASKLTIFHSISSTKLNSFSRKFSVGFSGNKNRKKVTTLKQGSFSYLPLGVQASASQAAASSTEAEPTKVGTVPSEMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFEDLPEKFDVVYDAIGQCDRAVKAIKEGGTVVALTGAVTPPGFRFVVTSNGEVLKKLNPYLESGKVKPIIDPKGPFPFSQVVEAFSYIETNKATGKVVIHPIP
Secondary Structure (PSIPRED)
cccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEccccccccEEEEccccccccccccEEEEEEEEcccHHHHHHHccccccccccccccccccccEEEEEEcccccccccccEEEEEccccccccccccccEEEEEcccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccEEEEEccccccHHHHHHHHHHcccccEEEEccccccHHHHHHccccEEEEccccccccccccccEEEEccccHHHHHHHHccccEEEEEcccccccccEEEEEEcHHHHHHHHHHHHccccEEEccccccccHHHHHHHHHHHHHccccccEEEEEcc
Secondary Structure Prediction (SSPRO)
ccHHHHccccccccccccccccccccccccEEcccccccccccccEEcccccccccccccccccccccccccccccHcccccccEEEEEEccccccEEEEcccccccccccccEEEEEEEEEccHHHHHHHccccccccccccccccccEEEEEEEEcccccccccccEEEEcccccccccccccccEEEEEEEcHHHcccccccccHHHHHHHHHHHHHHHHHHHHcccccccEEEEEEcccHHHHHHHHHHHHHcccEEEEEEccHHHHHHHHHHcccEEEEcccccHHHHHccccEEEEccccHHHHHHHHccccEEEEEEccccccccEEEEcccHHHHHHHHHHHHcccEEEEEcccccccHHHHHHHHHHHHccccEEEEEEEEcc
Coil and Loop (DISEMBL)
metiltttASKLTIFHSIsstklnsfsrkfsvgfsgnknrkkvttlkqgsfsylplgvqasasqaaassteaeptkvgtvpseMKAWLYgeyggvdvlkfdekvtvpqvkedQVLIKVVAAAlnpvdgkrrqgkfkatdsplptvpgydvaGVVVKVGTqvkefkegdevygdinekalegpkqfgslAEYTAVEERllapkpknldfvqAAGLPLAIETAYEGLertgfsagKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIdytkdnfedlpekFDVVYDAIGQCDRAVKAIKEGGTVValtgavtppgfrfvvTSNGevlkklnpylesgkvkpiidpkgpfpfsQVVEAFSYIEtnkatgkvvihpip
Flexible Loop (DISEMBL)
metiltttaskltifhsisstklnsfsrkfsvgfsgnknrkkvTTLKQGSFSYLPLGVQASASQAAAssteaeptkvgtvpSEMKAWLYGEYGGVDVLKFDEKVTVpqvkedqvLIKVVAAalnpvdgkrrqgkfkatdsplptvpgydvagVVVKVGTqvkefkegdevYGDINEKalegpkqfGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAatsstrnleFLKSLGADLAIDYTKDNFEDLPEKFDVVYDAIGQCDRAVKAIKEGGTVValtgavtppgfrfvVTSNGEVLKKLNPYLESGKVKPIIDPKGPFPFSQVVEAFSYIetnkatgkvvihpip
Low Complexity Region (SEG)
METILTTTASKLTIFHSISSTKLNSFSRKFSVGFSGNKNRKKVTTLKQGSFSYLPLGVqasasqaaassTEAEPTKVGTVPSEMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTvpgydvagvvvkvgtqvKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLERTGFSAGKsilvlngsggvgslviQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFEDLPEKFDVVYDAIGQCDRAVKAIKEGGTVVALTGAVTPPGFRFVVTSNGEVLKKLNPYLESGKVKPIIDPKGPFPFSQVVEAFSYIETNKATGKVVIHPIP
Disordered region (IsUnstruct)
*********SKLTIFHSISSTKL**F***FSV******************FSYL*****************************MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVD**************LPTVPGYDVAGVVVKVGTQVKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFEDLPEKFDVVYDAIGQCDRAVKAIKEGGTVVALTGAVTPPGFRFVVTSNGEVLKKLNPYLESGKVKPIIDPKGPFPFSQVVEAFSYIETNKATGKVVI****
Disordered Region (DISOPRED)
************************************************************************************KAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFEDLPEKFDVVYDAIGQCDRAVKAIKEGGTVVALTGAVTPPGFRFVVTSNGEVLKKLNPYLESGKVKPIIDPKGPFPFSQVVEAFSYIETNKATGKVVIHPIP
Disordered Region (DISEMBL)
METILTTTASKLTIFHSISSTKLNSFSRKFSVGFSGNKNRKKVTTLKQGSFSYLPLGV********************TVPSEMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFEDLPEKFDVVYDAIGQCDRAVKAIKEGGTVVALTGAVTPPGFRFVVTSNGEVLKKLNPYLESGKVKPIIDPKGPFPFSQVVEAFSYIETNKATGKVVIHPIP
Disordered Region (DISPRO)
**********KLTIFHSISSTKLNSFSRKFSVGFS********************************************VPSEMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFEDLPEKFDVVYDAIGQCDRAVKAIKEGGTVVALTGAVTPPGFRFVVTSNGEVLKKLNPYLESGKVKPIIDPKGPFPFSQVVEAFSYIETNKATGKVVIHPIP
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
METILTTTASKLTIFHSISSTKLNSFSRKFSVGFSGNKNRKKVTTLKQGSFSYLPLGVQASASQAAASSTEAEPTKVGTVPSEMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFEDLPEKFDVVYDAIGQCDRAVKAIKEGGTVVALTGAVTPPGFRFVVTSNGEVLKKLNPYLESGKVKPIIDPKGPFPFSQVVEAFSYIETNKATGKVVIHPIP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	392	2.2.26 [Sep-21-2011]
Q9ZUC1	386	Quinone oxidoreductase-li	yes	no	0.803	0.816	0.806	1e-150
Q0VC50	396	Reticulon-4-interacting p	yes	no	0.747	0.739	0.311	4e-34
Q8H0M1	329	Quinone-oxidoreductase ho	N/A	no	0.742	0.884	0.355	5e-34
Q924D0	396	Reticulon-4-interacting p	yes	no	0.760	0.752	0.318	1e-32
Q7T3C7	387	Reticulon-4-interacting p	yes	no	0.742	0.751	0.323	2e-32
Q8WWV3	396	Reticulon-4-interacting p	yes	no	0.75	0.742	0.307	5e-32
Q9SV68	329	Putative quinone-oxidored	no	no	0.744	0.887	0.336	6e-31
O42909	347	Zinc-type alcohol dehydro	yes	no	0.755	0.853	0.304	2e-27
Q54II4	352	Reticulon-4-interacting p	yes	no	0.760	0.846	0.257	3e-27
Q8CRJ7	336	Zinc-type alcohol dehydro	no	no	0.686	0.800	0.315	2e-24

>sp|Q9ZUC1|QORL_ARATH Quinone oxidoreductase-like protein At1g23740, chloroplastic OS=Arabidopsis thaliana GN=At1g23740 PE=1 SV=2

 Score =  532 bits (1371), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 254/315 (80%), Positives = 289/315 (91%)

Query: 78  GTVPSEMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKA 137
            ++P EMKAW+Y +YGGVDVLK +  + VP++KEDQVLIKVVAAALNPVD KRRQGKFKA
Sbjct: 72  ASIPKEMKAWVYSDYGGVDVLKLESNIVVPEIKEDQVLIKVVAAALNPVDAKRRQGKFKA 131

Query: 138 TDSPLPTVPGYDVAGVVVKVGTQVKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEER 197
           TDSPLPTVPGYDVAGVVVKVG+ VK+ KEGDEVY +++EKALEGPKQFGSLAEYTAVEE+
Sbjct: 132 TDSPLPTVPGYDVAGVVVKVGSAVKDLKEGDEVYANVSEKALEGPKQFGSLAEYTAVEEK 191

Query: 198 LLAPKPKNLDFVQAAGLPLAIETAYEGLERTGFSAGKSILVLNGSGGVGSLVIQLAKQVF 257
           LLA KPKN+DF QAAGLPLAIETA EGL RT FSAGKSILVLNG+GGVGSLVIQLAK V+
Sbjct: 192 LLALKPKNIDFAQAAGLPLAIETADEGLVRTEFSAGKSILVLNGAGGVGSLVIQLAKHVY 251

Query: 258 GASRVAATSSTRNLEFLKSLGADLAIDYTKDNFEDLPEKFDVVYDAIGQCDRAVKAIKEG 317
           GAS+VAAT+ST  LE ++SLGADLAIDYTK+N EDLP+K+DVV+DAIG CD+AVK IKEG
Sbjct: 252 GASKVAATASTEKLELVRSLGADLAIDYTKENIEDLPDKYDVVFDAIGMCDKAVKVIKEG 311

Query: 318 GTVVALTGAVTPPGFRFVVTSNGEVLKKLNPYLESGKVKPIIDPKGPFPFSQVVEAFSYI 377
           G VVALTGAVTPPGFRFVVTSNG+VLKKLNPY+ESGKVKP++DPKGPFPFS+V +AFSY+
Sbjct: 312 GKVVALTGAVTPPGFRFVVTSNGDVLKKLNPYIESGKVKPVVDPKGPFPFSRVADAFSYL 371

Query: 378 ETNKATGKVVIHPIP 392
           ETN ATGKVV++PIP
Sbjct: 372 ETNHATGKVVVYPIP 386

Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: -EC: .EC: -EC: .EC: -

>sp|Q0VC50|RT4I1_BOVIN Reticulon-4-interacting protein 1, mitochondrial OS=Bos taurus GN=RTN4IP1 PE=2 SV=1

 Score =  145 bits (367), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 115/369 (31%), Positives = 175/369 (47%), Gaps = 76/369 (20%)

Query: 84  MKAWLYGEYGGVDVLKFDEKVTVPQVK-EDQVLIKVVAAALNPVDGKRRQG--------- 133
           M AW+  +YG  +VL+F + + +P +   ++V+IKV AA++NP+D   R G         
Sbjct: 43  MPAWVIDKYGSNEVLRFTQNMMIPMIHYPNEVIIKVHAASINPIDVNMRSGYGATALNMK 102

Query: 134 ------KFKATDSPLPTVPGYDVAGVVVKVGTQVKEFKEGDEVYGDINEKALEGPKQFGS 187
                 K K  + PL    G DV+GVV++ G  V+ FK GDEV+  +       P + G+
Sbjct: 103 RDPLHVKIKGEEFPLTL--GRDVSGVVMECGLDVRYFKPGDEVWAAVP------PWKQGT 154

Query: 188 LAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLERTG-----FSAGKSILVLNGS 242
           L+E+  V    ++ KP++L   QAA LP    TA+  + + G        GK +L+L  S
Sbjct: 155 LSEFVVVSGNEVSHKPRSLTHTQAASLPYVALTAWSAINKVGGLNDRNCTGKRVLILGAS 214

Query: 243 GGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFE---DLPEKFDV 299
           GGVG+  IQ+ K     + V A  S    E ++ LGAD  IDY   N E      + FD 
Sbjct: 215 GGVGTFAIQVMKA--WDAHVTAVCSQDASELVRKLGADDVIDYKSGNVEAQLKSSKPFDF 272

Query: 300 VYDAIGQCDR--AVKAIKE--GGTVVALTGAVTP-------------------------- 329
           + D +G      A+K +K+  G T V L   VTP                          
Sbjct: 273 ILDNVGGSTETWALKFLKKWSGATYVTL---VTPFLLNMDRLGIADGMLQTGVTVGSKTL 329

Query: 330 ------PGFRFV-VTSNGEVLKKLNPYLESGKVKPIIDPKGPFPFSQVVEAFSYIETNKA 382
                   +R+    ++G  L  +   +E+GK++P+I+    FPFS+V EAF  +E   A
Sbjct: 330 KHFWQGVHYRWAFFMASGPCLDDIAELVEAGKIQPVIEKT--FPFSKVPEAFLKVERGHA 387

Query: 383 TGKVVIHPI 391
            GK VI+ +
Sbjct: 388 RGKTVINVV 396

Appears to be a potent inhibitor of regeneration following spinal cord injury.

Bos taurus (taxid: 9913)

>sp|Q8H0M1|QORH_SPIOL Quinone-oxidoreductase homolog, chloroplastic OS=Spinacia oleracea GN=QOR PE=1 SV=1

 Score =  145 bits (366), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 121/340 (35%), Positives = 169/340 (49%), Gaps = 49/340 (14%)

Query: 84  MKAWLYGEYGG-VDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKAT-DSP 141
           M A  Y  YGG  D LK  E V VP  K D++L+K+ AA LNP+D K ++G  +      
Sbjct: 6   MHAIQYSGYGGGTDALKHVE-VAVPDPKSDELLLKIEAATLNPIDWKIQKGVLRPLLPRK 64

Query: 142 LPTVPGYDVAGVVVKVGTQVKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAP 201
            PT+PG DVAG VV+ G+ V  FK GD+V   ++          G+LAEY   +E L   
Sbjct: 65  FPTIPGTDVAGEVVQAGSAVNRFKTGDKVVAVLSHAT------GGALAEYAVAKENLTVA 118

Query: 202 KPKNLDFVQAAGLPLAIETAYEGLER------TGFSAGKSILVLNGSGGVGSLVIQLAKQ 255
           +P  +   + A LP+A  TA++ L +       G    K+IL+   SGGVG   +QLAK 
Sbjct: 119 RPPEVSAAEGAALPVAALTAHQALTQFANIKLDGSGERKNILITAASGGVGHYAVQLAK- 177

Query: 256 VFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFEDLP----EKFD-VVYDAIGQCDRA 310
             G + V AT   RNL+F+K LGAD  +DY       L     +K+D VV+ A G     
Sbjct: 178 -LGNTHVTATCGARNLDFVKGLGADEVLDYKTPEGASLTSPSGKKYDYVVHGASGIPWST 236

Query: 311 VKA-IKEGGTVVALTGAVTPPGFRFVVTSNGEVL----KKLNPYL--------------- 350
            +  + E G V+ LT     PG   ++T   + L    K+L P L               
Sbjct: 237 FEPNLSEAGKVIDLT-----PGPTAMMTFAWKKLTFSKKQLVPLLLIPKIPNFEYVVNLV 291

Query: 351 ESGKVKPIIDPKGPFPFSQVVEAFSYIETNKATGKVVIHP 390
           +  K+K +ID K   P S+  +A+S I    ATGK++I P
Sbjct: 292 KEKKLKTVIDSK--HPLSKGEDAWSRIMGGHATGKIIIEP 329

Spinacia oleracea (taxid: 3562)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|Q924D0|RT4I1_MOUSE Reticulon-4-interacting protein 1, mitochondrial OS=Mus musculus GN=Rtn4ip1 PE=1 SV=2

 Score =  141 bits (355), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 116/364 (31%), Positives = 173/364 (47%), Gaps = 66/364 (18%)

Query: 84  MKAWLYGEYGGVDVLKFDEKVTVPQVK-EDQVLIKVVAAALNPVDGKRRQG--------- 133
           M AW+  +YG  +VL+F + + +P +   ++V+IKV AA++NP+D   R G         
Sbjct: 43  MPAWVIDKYGKNEVLRFTQNMMLPIIHYPNEVIIKVHAASVNPIDVNMRSGYGATALNMK 102

Query: 134 ----KFKATDSPLPTVPGYDVAGVVVKVGTQVKEFKEGDEVYGDINEKALEGPKQFGSLA 189
                 K      P   G DV+GVV++ G  VK F+ GDEV+  +       P + G+L+
Sbjct: 103 RDPLHMKTKGEEFPLTLGRDVSGVVMECGLDVKYFQPGDEVWAAVP------PWKQGTLS 156

Query: 190 EYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLERTG-----FSAGKSILVLNGSGG 244
           E+  V    ++ KPK+L   QAA LP    TA+  + + G        GK  L+L  SGG
Sbjct: 157 EFVVVSGNEVSHKPKSLTHTQAASLPYVALTAWSAINKVGGLSDKNCKGKRALILGASGG 216

Query: 245 VGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFEDLPEK---FDVVY 301
           VG+  IQ+ K  +GA  V A  S    E ++ LGAD  IDYT  + E+  +    FD + 
Sbjct: 217 VGTFAIQVMK-AWGA-HVTAVCSKDASELVRKLGADEVIDYTLGSVEEQLKSLKLFDFIL 274

Query: 302 DAIGQCDR--AVKAIKE--GGTVVALTG---------AVTPPGFRFVVTSNGEVLKKL-- 346
           D +G      A+  +K+  G T V L            V     +  VT   + LK L  
Sbjct: 275 DNVGGSTETWALNFLKKWSGATYVTLVTPFLLNMDRLGVADGMLQTGVTVGTKALKHLWQ 334

Query: 347 ------------NPYL-------ESGKVKPIIDPKGPFPFSQVVEAFSYIETNKATGKVV 387
                        PYL       ++GK++P+I+    FPFS+V EAF  +E   A GK V
Sbjct: 335 GVHYRWAFFMASGPYLDEIAELVDAGKIRPVIERT--FPFSEVPEAFLKVERGHARGKTV 392

Query: 388 IHPI 391
           ++ +
Sbjct: 393 VNVV 396

Appears to be a potent inhibitor of regeneration following spinal cord injury.

Mus musculus (taxid: 10090)

>sp|Q7T3C7|RT4I1_DANRE Reticulon-4-interacting protein 1 homolog, mitochondrial OS=Danio rerio GN=rtn4ip1 PE=2 SV=2

 Score =  140 bits (353), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 118/365 (32%), Positives = 174/365 (47%), Gaps = 74/365 (20%)

Query: 84  MKAWLYGEYGGVDVLKFDEKVTVPQVK-EDQVLIKVVAAALNPVDGKRRQGKFKAT---- 138
           M AW+  +YG  DVL+F +   +P +   ++V++KV AA LNP+D   R G   AT    
Sbjct: 29  MPAWVIDKYGKNDVLRFTKNAALPIIHYPNEVVVKVHAAGLNPIDISMRGGYGAATMAMK 88

Query: 139 DSPL---------PTVPGYDVAGVVVKVGTQVKEFKEGDEVYGDINEKALEGPKQFGSLA 189
             PL         P + G DV+G +++ G  VK FK GD+V+  I       P + GSLA
Sbjct: 89  RDPLNISQSGGEFPLILGRDVSGEIMECGLDVKYFKPGDQVWAAIP------PWKQGSLA 142

Query: 190 EYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLERTG-----FSAGKSILVLNGSGG 244
           E+  V    ++ KPK+L   +AA +P    TA+  +  TG      SA K +L+L GSGG
Sbjct: 143 EFVVVSGNEVSHKPKSLRHDEAASIPYVAATAWSAIVNTGGLNKDNSAKKRVLILGGSGG 202

Query: 245 VGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYT----KDNFEDLPEKFDVV 300
           VG+  IQ+ K  +GA  V  T S      ++ LGAD  +DYT    +   ++L EKFD++
Sbjct: 203 VGTFAIQMVK-AWGA-HVTVTCSQNAERLVRDLGADDVVDYTAGPVEKQLKNL-EKFDLI 259

Query: 301 YDAIG----------------------------QCDR-------AVKAIKEGGTVVA--L 323
            D+IG                              DR          A+  G  VV    
Sbjct: 260 LDSIGGETEKWALDLLKPWSGAKFVTLITPFLQNTDRLGLADGMMQSAVTVGCKVVKNLR 319

Query: 324 TGAVTPPGFRFVVTSNGEVLKKLNPYLESGKVKPIIDPKGPFPFSQVVEAFSYIETNKAT 383
            G     GF      +G  L +++  +++GKV+P+++    F F+QV EAF  +E   A 
Sbjct: 320 KGVHYRWGF---FAPSGSALDEVSEMVDAGKVRPVVEE--VFSFAQVPEAFQKVEQGHAR 374

Query: 384 GKVVI 388
           GK V+
Sbjct: 375 GKTVV 379

May be a potent inhibitor of regeneration.

Danio rerio (taxid: 7955)

>sp|Q8WWV3|RT4I1_HUMAN Reticulon-4-interacting protein 1, mitochondrial OS=Homo sapiens GN=RTN4IP1 PE=1 SV=2

 Score =  139 bits (349), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 112/364 (30%), Positives = 172/364 (47%), Gaps = 70/364 (19%)

Query: 84  MKAWLYGEYGGVDVLKFDEKVTVPQVK-EDQVLIKVVAAALNPVDGKRRQG--------- 133
           M AW+  +YG  +VL+F + + +P +   ++V++KV AA++NP+D   R G         
Sbjct: 43  MPAWVIDKYGKNEVLRFTQNMMMPIIHYPNEVIVKVHAASVNPIDVNMRSGYGATALNMK 102

Query: 134 ------KFKATDSPLPTVPGYDVAGVVVKVGTQVKEFKEGDEVYGDINEKALEGPKQFGS 187
                 K K  + PL    G DV+GVV++ G  VK FK GDEV+  +       P + G+
Sbjct: 103 RDPLHVKIKGEEFPLTL--GRDVSGVVMECGLDVKYFKPGDEVWAAVP------PWKQGT 154

Query: 188 LAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLERTG-----FSAGKSILVLNGS 242
           L+E+  V    ++ KPK+L   QAA LP    TA+  + + G        GK +L+L  S
Sbjct: 155 LSEFVVVSGNEVSHKPKSLTHTQAASLPYVALTAWSAINKVGGLNDKNCTGKRVLILGAS 214

Query: 243 GGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFEDLPEK---FDV 299
           GGVG+  IQ+ K     + V A  S    E ++ LGAD  IDY   + E+  +    FD 
Sbjct: 215 GGVGTFAIQVMKA--WDAHVTAVCSQDASELVRKLGADDVIDYKSGSVEEQLKSLKPFDF 272

Query: 300 VYDAIG----------------------------QCDR---AVKAIKEGGTV--VALTGA 326
           + D +G                              DR   A   ++ G TV   AL   
Sbjct: 273 ILDNVGGSTETWAPDFLKKWSGATYVTLVTPFLLNMDRLGIADGMLQTGVTVGSKALKHF 332

Query: 327 VTPPGFRFV-VTSNGEVLKKLNPYLESGKVKPIIDPKGPFPFSQVVEAFSYIETNKATGK 385
                +R+    ++G  L  +   +++GK++P+I+    FPFS+V EAF  +E   A GK
Sbjct: 333 WKGVHYRWAFFMASGPCLDDIAELVDAGKIRPVIEQT--FPFSKVPEAFLKVERGHARGK 390

Query: 386 VVIH 389
            VI+
Sbjct: 391 TVIN 394

Appears to be a potent inhibitor of regeneration following spinal cord injury.

Homo sapiens (taxid: 9606)

>sp|Q9SV68|QORH_ARATH Putative quinone-oxidoreductase homolog, chloroplastic OS=Arabidopsis thaliana GN=At4g13010 PE=2 SV=1

 Score =  135 bits (340), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 114/339 (33%), Positives = 161/339 (47%), Gaps = 47/339 (13%)

Query: 84  MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKA-TDSPL 142
           M A  Y  YGG        +V VP  K ++V +K+ A +LNPVD K ++G  +       
Sbjct: 6   MHALQYNSYGGGAAGLEHVQVPVPTPKSNEVCLKLEATSLNPVDWKIQKGMIRPFLPRKF 65

Query: 143 PTVPGYDVAGVVVKVGTQVKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPK 202
           P +P  DVAG VV+VG+ VK FK GD+V   ++   L G    G LAE+    E+L   +
Sbjct: 66  PCIPATDVAGEVVEVGSGVKNFKAGDKVVAVLSH--LGG----GGLAEFAVATEKLTVKR 119

Query: 203 PKNLDFVQAAGLPLAIETAYE------GLERTGFSAGKSILVLNGSGGVGSLVIQLAKQV 256
           P+ +   +AA LP+A  TA +      GL+  G     +ILV   SGGVG   +QLAK  
Sbjct: 120 PQEVGAAEAAALPVAGLTALQALTNPAGLKLDGTGKKANILVTAASGGVGHYAVQLAK-- 177

Query: 257 FGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFEDLPEKFDVVYDAIGQCDRAV----- 311
              + V AT   RN+EF+KSLGAD  +DY       L       YDA+  C   +     
Sbjct: 178 LANAHVTATCGARNIEFVKSLGADEVLDYKTPEGAALKSPSGKKYDAVVHCANGIPFSVF 237

Query: 312 -KAIKEGGTVVALTGAVTPPG----FRFVVTSNGEVLKKLNPYL---------------E 351
              + E G V+ +T     PG    + + V       K+L P L               +
Sbjct: 238 EPNLSENGKVIDIT-----PGPNAMWTYAVKKITMSKKQLVPLLLIPKAENLEFMVNLVK 292

Query: 352 SGKVKPIIDPKGPFPFSQVVEAFSYIETNKATGKVVIHP 390
            GKVK +ID K   P S+  +A++      ATGK+++ P
Sbjct: 293 EGKVKTVIDSK--HPLSKAEDAWAKSIDGHATGKIIVEP 329

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|O42909|YBI2_SCHPO Zinc-type alcohol dehydrogenase-like protein C16A3.02c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC16A3.02c PE=3 SV=1

 Score =  123 bits (309), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 103/338 (30%), Positives = 159/338 (47%), Gaps = 42/338 (12%)

Query: 86  AWLYGEYGG-VDVLKFDEKVTVPQVKE---DQVLIKVVAAALNPVDGK---RRQGKFKAT 138
           AWLY   G   DVL  ++ + +P   E     VL++VVA ++NP+D K     Q   KA 
Sbjct: 14  AWLYNRTGKPKDVLYLEKGLHIPNPAELGPYDVLVEVVATSINPLDYKLMNTYQMIAKAL 73

Query: 139 DSPLPTVPGYDVAGVVVKVGTQVKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERL 198
              LP +PGYD AG V+ VG++VKEF     V+G   +      +Q GS A +    ++ 
Sbjct: 74  -FKLPNIPGYDFAGRVLAVGSEVKEFSATQRVWG--CQSFPRAGRQGGSCATHIVTGDKD 130

Query: 199 LAPKPKNLDFVQAAGLPLAIETAYEGLER-TGFSAGKSILVLNGSGGVGSLVIQLAKQVF 257
           +   P  + F + AG  +A  TA+E L R      G  +++   SGGVG+  + LAK + 
Sbjct: 131 VWHLPDGVSFNEGAGFGIAGLTAWEVLVRQMKVKPGTKLVIEGASGGVGTFAVALAKAL- 189

Query: 258 GASRVAATSSTRNLEFLKSLGADLAIDYTKDNF-EDLPE--KFDVVYDAIGQ---CDRAV 311
               V   SST NL+  KSLGA   +DY KDN  E L +   +D V+D +        + 
Sbjct: 190 -ECEVTTISSTENLDLCKSLGATHTLDYKKDNLVERLADLGPYDFVFDCVNDNVLYRASS 248

Query: 312 KAIKEGGTVVALTGAVT---------------------PPGFRFVVTSNGEVLKKLNPYL 350
           K +K  G    + G +T                        +  ++  + E+L+    ++
Sbjct: 249 KFVKPDGAFFGIGGDITLSYVGSRLSRTLRPRVLGGSSHSYYNILLHVDQEMLRDFVDFV 308

Query: 351 ESGKVKPIIDPKGPFPFSQVVEAFSYIETNKATGKVVI 388
               +K +ID    + F   VEAF+ + T++  GKV+I
Sbjct: 309 MKHNIKTVIDS--VYDFEDTVEAFNRLMTHRCKGKVII 344

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|Q54II4|RT4I1_DICDI Reticulon-4-interacting protein 1 homolog, mitochondrial OS=Dictyostelium discoideum GN=rtn4ip1 PE=3 SV=1

 Score =  122 bits (307), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 92/357 (25%), Positives = 166/357 (46%), Gaps = 59/357 (16%)

Query: 84  MKAWLYGEYG-GVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKAT---D 139
           MK  L   YG  +D+L++   + VP+  + QVLIK+ + ++NP+D   R+G   +     
Sbjct: 1   MKGILLNGYGESLDLLEYKTDLPVPKPIKSQVLIKIHSTSINPLDNVMRKGYASSIVDLK 60

Query: 140 SPLPTVPGYDVAGVVVKVGTQVKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLL 199
             LP + G + +G +V++G  V +++ GD+V+      +   P   GS  EY  V+E  +
Sbjct: 61  LKLPIILGRECSGEIVEIGDSVWDYEIGDQVW------SASPPFSMGSHCEYITVDESEI 114

Query: 200 APKPKNLDFVQAAGLPLAIETAYEGLERT-----GFSAGKSILVLNGSGGVGSLVIQLAK 254
           + KPKNL   Q+A +P A  TA+  +          +    ILV  G+G VG  ++QL K
Sbjct: 115 SLKPKNLTHQQSASIPFASLTAWNAIYNVLPTNKKITTNTKILVNGGNGSVGFFILQLLK 174

Query: 255 QVFGASRVAATSSTRNLEFLKSLG-ADLAIDYTKDNFEDLP-EKFDVVYDAIG------- 305
           +    ++V+ T + ++ E LK L   +  IDY      D    KFD++++          
Sbjct: 175 KHLNVNQVSTTCNIKHFEKLKKLTLVNETIDYNNLKINDNDNNKFDLIFNCYDGGKNQNE 234

Query: 306 QCDRAVKAIKEGGTVVALTGAVT------------PPGFRFVVTS--------------- 338
              + + A+K+GG ++   G +             P G    + S               
Sbjct: 235 NEKKCIDALKDGGNLIGFNGPLVKFSDKDGVLSGLPMGMMNQLNSSERIKKQYSKNVHLD 294

Query: 339 ------NGEVLKKLNPYLESGKVKPIIDPKGPFPFSQVVEAFSYIETNKATGKVVIH 389
                 +G  LK+++   E+  + P ID +  F  +Q+ +A++  E + + GK++I+
Sbjct: 295 YAIFSPSGSTLKQISKLYENNILIPNIDKQ--FNLNQIKDAYTCFENSNSNGKIIIN 349

Dictyostelium discoideum (taxid: 44689)

>sp|Q8CRJ7|ZDH1_STAES Zinc-type alcohol dehydrogenase-like protein SE_1777 OS=Staphylococcus epidermidis (strain ATCC 12228) GN=SE_1777 PE=3 SV=1

 Score =  113 bits (283), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 102/323 (31%), Positives = 153/323 (47%), Gaps = 54/323 (16%)

Query: 106 VPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKEFK 165
           +P     ++L+KV + ++NPVD K+R          +P V G+D  GV+ K+G QV  F+
Sbjct: 25  IPHPSGHELLVKVQSISVNPVDTKQRTMPV----DKVPRVLGFDAVGVIEKIGDQVSMFQ 80

Query: 166 EGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGL 225
           EGD V+          P Q GS  EY  +EE L+A  P NL   QAA LPL   TAYE L
Sbjct: 81  EGDVVFYS------GSPNQNGSNEEYQLIEEYLVAKAPTNLKSEQAASLPLTGLTAYETL 134

Query: 226 -ERTGFS------AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLG 278
            +  G S       GKS+L++NG+GGVGS+  Q+AK  +G   +   S    +++  ++G
Sbjct: 135 FDVFGISKEPSENKGKSLLIINGAGGVGSIATQIAK-FYGLKVITTASREDTIKWSVNMG 193

Query: 279 ADLAIDYTKD---NFEDLP-EKFDVV---YDAIGQCDRAVKAIKEGG---TVVALTG--- 325
           AD+ +++ KD    F+D   E  D +   +D     +  V  +K  G   T+VA      
Sbjct: 194 ADVVLNHKKDLSQQFKDNHIEGVDYIFCTFDTDMYYEMMVNLVKPRGHIATIVAFNSQQD 253

Query: 326 -------AVT---------PPGFRFVVTSNGEVLKKLNPYLESGKVKP----IIDPKGPF 365
                  +VT         P      V  + E LK +   +E G  +P    +ID     
Sbjct: 254 LNLLKSKSVTFTHEFMFSRPLHHTDDVIKHHEYLKDITEKVEQGYYQPTTTKVID---GL 310

Query: 366 PFSQVVEAFSYIETNKATGKVVI 388
               + EA   +E++   GK+VI
Sbjct: 311 DVDSLYEAHQILESHSMIGKLVI 333

Staphylococcus epidermidis (strain ATCC 12228) (taxid: 176280)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	392
255568816	389	alcohol dehydrogenase, putative [Ricinus	0.977	0.984	0.830	1e-179
388495252	387	unknown [Lotus japonicus]	0.982	0.994	0.780	1e-172
118488941	383	unknown [Populus trichocarpa x Populus d	0.971	0.994	0.791	1e-169
356526809	397	PREDICTED: quinone oxidoreductase-like p	0.926	0.914	0.817	1e-167
356567630	395	PREDICTED: quinone oxidoreductase-like p	0.923	0.916	0.817	1e-165
307135978	383	alcohol dehydrogenase [Cucumis melo subs	0.974	0.997	0.768	1e-164
449434925	383	PREDICTED: quinone oxidoreductase-like p	0.974	0.997	0.760	1e-162
449478569	383	PREDICTED: quinone oxidoreductase-like p	0.974	0.997	0.758	1e-162
310747931	383	chloroplastic alkenal/one oxidoreductase	0.974	0.997	0.758	1e-162
224140597	309	predicted protein [Populus trichocarpa]	0.788	1.0	0.886	1e-157

>gi|255568816|ref|XP_002525379.1| alcohol dehydrogenase, putative [Ricinus communis] gi|223535342|gb|EEF37017.1| alcohol dehydrogenase, putative [Ricinus communis]

 Score =  632 bits (1630), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 324/390 (83%), Positives = 352/390 (90%), Gaps = 7/390 (1%)

Query: 6   TTTASKLTIFHSISSTKLNSFSRKFSVGFSGNKNRKKVTTLKQGSFS---YLPLGVQASA 62
           T T  KLT FHS+SS     FS +F+  F  N +RKK   L+Q S S   ++PL V A+ 
Sbjct: 4   TITNPKLTPFHSLSSNLSPPFSLRFAPTFPEN-SRKKPNFLRQSSSSSLSHIPLRVSAN- 61

Query: 63  SQAAASSTEAEPTKVGTVPSEMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAA 122
           SQAA +ST+A  TK+ ++PSEMKAW+YGEYGGVDVLKFDEKV+VP+VKEDQVLIKVVAAA
Sbjct: 62  SQAAPASTQA--TKISSLPSEMKAWVYGEYGGVDVLKFDEKVSVPEVKEDQVLIKVVAAA 119

Query: 123 LNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKEFKEGDEVYGDINEKALEGP 182
           LNPVD KRRQGKFKATDSPLPTVPGYDVAG+VVKVG++VKE KEGDEVYGDINEKALEGP
Sbjct: 120 LNPVDAKRRQGKFKATDSPLPTVPGYDVAGIVVKVGSKVKELKEGDEVYGDINEKALEGP 179

Query: 183 KQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLERTGFSAGKSILVLNGS 242
           KQFGSLAEYTAVEE+LLA KPKNLDFVQAA LPLAIETAYEGLERTGFSAGKSILVLNGS
Sbjct: 180 KQFGSLAEYTAVEEKLLALKPKNLDFVQAASLPLAIETAYEGLERTGFSAGKSILVLNGS 239

Query: 243 GGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFEDLPEKFDVVYD 302
           GGVGSLVIQLAK VFGAS+VAATS TRNLE LKSLGADLAIDYTK+NFEDLPEKFDVVYD
Sbjct: 240 GGVGSLVIQLAKHVFGASKVAATSGTRNLEILKSLGADLAIDYTKENFEDLPEKFDVVYD 299

Query: 303 AIGQCDRAVKAIKEGGTVVALTGAVTPPGFRFVVTSNGEVLKKLNPYLESGKVKPIIDPK 362
           AIGQCDRAVKA+KEGG+VVALTGAVTPPGFRFVVTSNG+VLKKLNPYLESGKVKP+IDPK
Sbjct: 300 AIGQCDRAVKAVKEGGSVVALTGAVTPPGFRFVVTSNGDVLKKLNPYLESGKVKPVIDPK 359

Query: 363 GPFPFSQVVEAFSYIETNKATGKVVIHPIP 392
           GPFPFSQV EAFSYIETN+ATGK+VIHPIP
Sbjct: 360 GPFPFSQVAEAFSYIETNRATGKIVIHPIP 389

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388495252|gb|AFK35692.1| unknown [Lotus japonicus]

 Score =  610 bits (1572), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 306/392 (78%), Positives = 336/392 (85%), Gaps = 7/392 (1%)

Query: 1   METILTTTASKLTIFHSISSTKLNSFSRKFSVGFSGNKNRKKVTTLKQGSFSYLPLGVQA 60
           +   L++T S LTI  S+ ++  +  SR+FS  F  N+N    TTL    F Y    +  
Sbjct: 3   LSAALSSTTSHLTILPSLITSTTSPLSRRFSFTFLENRNPTTTTTL----FPYKQRLLVK 58

Query: 61  SASQAAASSTEAEPTKVGTVPSEMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVA 120
           S + A ASS   E  KV  VPSEMKAW+YGEYGGVDVLKFD  V VP +KEDQVL++VVA
Sbjct: 59  SQATAPASS---EAVKVSPVPSEMKAWVYGEYGGVDVLKFDSNVAVPDLKEDQVLVRVVA 115

Query: 121 AALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKEFKEGDEVYGDINEKALE 180
           AALNPVD KRRQGKFKATDSPLPTVPGYDVAGVVVKVG++VKEF+ GDEVYGD+NEKALE
Sbjct: 116 AALNPVDAKRRQGKFKATDSPLPTVPGYDVAGVVVKVGSEVKEFRVGDEVYGDVNEKALE 175

Query: 181 GPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLERTGFSAGKSILVLN 240
           GPKQFGSLAEYTAVEE+LLAPKPKNLDF QAA LPLAIETAYEGLERTGFS+GKSILVLN
Sbjct: 176 GPKQFGSLAEYTAVEEKLLAPKPKNLDFAQAASLPLAIETAYEGLERTGFSSGKSILVLN 235

Query: 241 GSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFEDLPEKFDVV 300
           GSGGVGSLVIQLAKQVFGA+RVAAT  TRNLE LKSLG DLAIDYTK+NFEDLPEKFDVV
Sbjct: 236 GSGGVGSLVIQLAKQVFGAARVAATPGTRNLELLKSLGVDLAIDYTKENFEDLPEKFDVV 295

Query: 301 YDAIGQCDRAVKAIKEGGTVVALTGAVTPPGFRFVVTSNGEVLKKLNPYLESGKVKPIID 360
           YDAIGQCDRAVKAIKEGG+VVALTGAVTPPGFRFVVTSNG VL+KLNPYLESGKVKPI+D
Sbjct: 296 YDAIGQCDRAVKAIKEGGSVVALTGAVTPPGFRFVVTSNGTVLRKLNPYLESGKVKPIVD 355

Query: 361 PKGPFPFSQVVEAFSYIETNKATGKVVIHPIP 392
            KGPFPF+Q+ EAFSY+ETN+ATGKVVIHPIP
Sbjct: 356 SKGPFPFTQLAEAFSYLETNRATGKVVIHPIP 387

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118488941|gb|ABK96279.1| unknown [Populus trichocarpa x Populus deltoides]

 Score =  600 bits (1546), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 312/394 (79%), Positives = 340/394 (86%), Gaps = 13/394 (3%)

Query: 1   METILTTTASKLTIFH-SISSTKLNSFSRKFSVGFSGNKNRKKVTTLKQ-GSFSYLPLGV 58
           MET +TT   KLT  H  ISS   NSFS  FS+ F      KK   +K   S S++PL V
Sbjct: 1   METTMTTAVPKLTTLHPRISS---NSFSLIFSLTFPA----KKTALVKHTCSPSHIPLRV 53

Query: 59  QASASQAAASSTEAEPTKVGTVPSEMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKV 118
            AS+   AA+    E TKV ++PSEMKA +YGEYGGV+VLKFD+KV+VP+VKEDQVLIKV
Sbjct: 54  SASSQSQAAA----EATKVSSIPSEMKACVYGEYGGVEVLKFDDKVSVPEVKEDQVLIKV 109

Query: 119 VAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKEFKEGDEVYGDINEKA 178
           VAAALNPVD KRRQGKFKATDSPLPTVPGYDVAGVVVKVG QVKE KEGD VYG+INEKA
Sbjct: 110 VAAALNPVDAKRRQGKFKATDSPLPTVPGYDVAGVVVKVGNQVKELKEGDAVYGNINEKA 169

Query: 179 LEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLERTGFSAGKSILV 238
           LEGPKQFGSLAEYTAVEE+LLA KPKNLDF+QAAGLPLAIETAYEGLERTGFSAGKSILV
Sbjct: 170 LEGPKQFGSLAEYTAVEEKLLALKPKNLDFIQAAGLPLAIETAYEGLERTGFSAGKSILV 229

Query: 239 LNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFEDLPEKFD 298
           LNG+GGVGSLVIQLAK VFGASR+AATSST  LE LKSLGADLAIDYTK+NFEDLPEKFD
Sbjct: 230 LNGAGGVGSLVIQLAKHVFGASRIAATSSTGKLELLKSLGADLAIDYTKENFEDLPEKFD 289

Query: 299 VVYDAIGQCDRAVKAIKEGGTVVALTGAVTPPGFRFVVTSNGEVLKKLNPYLESGKVKPI 358
           VVYDAIGQCD+AVK +KEGG+VVALTGAVTPPGFRFVVTSNG  LK LNPYLESGK+KP+
Sbjct: 290 VVYDAIGQCDKAVKVVKEGGSVVALTGAVTPPGFRFVVTSNGNTLKTLNPYLESGKIKPV 349

Query: 359 IDPKGPFPFSQVVEAFSYIETNKATGKVVIHPIP 392
           +DPKGPF FSQV EAFSYIETN+ATGK+VIHPIP
Sbjct: 350 VDPKGPFTFSQVAEAFSYIETNRATGKIVIHPIP 383

Source: Populus trichocarpa x Populus deltoides

Species: Populus trichocarpa x Populus deltoides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356526809|ref|XP_003532009.1| PREDICTED: quinone oxidoreductase-like protein At1g23740, chloroplastic-like [Glycine max]

 Score =  595 bits (1533), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 301/368 (81%), Positives = 323/368 (87%), Gaps = 5/368 (1%)

Query: 28  RKFSVGFSGNKNRKKVTTLKQGSF---SYLPLGVQASASQAAASSTEAEPTKVGTVPSEM 84
           RKFS+ F   KNR  +    +  F      P  V    SQA A ++ +E  KV  VPSEM
Sbjct: 32  RKFSLTFR-EKNRTPIAPPHKLPFFSARPAPTRVVLVKSQATAPAS-SEAVKVTPVPSEM 89

Query: 85  KAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPT 144
           KAW+YGEYGGVDVLK D  V VP VKEDQVLIKVVAAALNPVD KRRQGKFKATDSPLPT
Sbjct: 90  KAWVYGEYGGVDVLKLDSNVAVPDVKEDQVLIKVVAAALNPVDAKRRQGKFKATDSPLPT 149

Query: 145 VPGYDVAGVVVKVGTQVKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPK 204
           VPGYDVAGVVVKVG+QVK+FK GDEVYGD+NEKALEGPKQFGSLAEYTAVEE+LLAPKPK
Sbjct: 150 VPGYDVAGVVVKVGSQVKDFKVGDEVYGDVNEKALEGPKQFGSLAEYTAVEEKLLAPKPK 209

Query: 205 NLDFVQAAGLPLAIETAYEGLERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAA 264
           NLDF QAA LPLAIETAYEGLERTGFS GKSILVLNGSGGVGSLVIQLAKQV+GASRVAA
Sbjct: 210 NLDFAQAASLPLAIETAYEGLERTGFSPGKSILVLNGSGGVGSLVIQLAKQVYGASRVAA 269

Query: 265 TSSTRNLEFLKSLGADLAIDYTKDNFEDLPEKFDVVYDAIGQCDRAVKAIKEGGTVVALT 324
           TSSTRNL+ LKSLGADLAIDYTK+NFEDLPEKFDVVYDAIGQCDRAVKA+KE G+VVALT
Sbjct: 270 TSSTRNLDLLKSLGADLAIDYTKENFEDLPEKFDVVYDAIGQCDRAVKAVKEDGSVVALT 329

Query: 325 GAVTPPGFRFVVTSNGEVLKKLNPYLESGKVKPIIDPKGPFPFSQVVEAFSYIETNKATG 384
           GAVTPPGFRFVVTSNGEVL+KLNPYLESGKVKPI+DPKGPFPF ++ EAFSY+ETN+ATG
Sbjct: 330 GAVTPPGFRFVVTSNGEVLRKLNPYLESGKVKPIVDPKGPFPFDKLAEAFSYLETNRATG 389

Query: 385 KVVIHPIP 392
           KVVIHPIP
Sbjct: 390 KVVIHPIP 397

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356567630|ref|XP_003552020.1| PREDICTED: quinone oxidoreductase-like protein At1g23740, chloroplastic-like [Glycine max]

 Score =  588 bits (1515), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 300/367 (81%), Positives = 321/367 (87%), Gaps = 5/367 (1%)

Query: 28  RKFSVGFSGNKNRKKVTTLKQGSFSYLPLGVQAS--ASQAAASSTEAEPTKVGTVPSEMK 85
           RKF + F   KNR  +T  K   FS  P   +     SQA A ++ +E   V  V SEMK
Sbjct: 32  RKFPLTFR-EKNRTPITPHKL-PFSARPTTTRVVLVKSQATAPAS-SEAVAVTPVSSEMK 88

Query: 86  AWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTV 145
           AW+YGEYGGVDVLK D  VTVP VKEDQVLIKVVAAALNPVD KRRQGKFKATDSPLPTV
Sbjct: 89  AWVYGEYGGVDVLKLDSNVTVPDVKEDQVLIKVVAAALNPVDAKRRQGKFKATDSPLPTV 148

Query: 146 PGYDVAGVVVKVGTQVKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKN 205
           PGYDVAGVVVKVG+QVK+FK GDEVYGD+NEKALEGPKQFGSLAEYTAVEE+LLA KPKN
Sbjct: 149 PGYDVAGVVVKVGSQVKDFKVGDEVYGDVNEKALEGPKQFGSLAEYTAVEEKLLASKPKN 208

Query: 206 LDFVQAAGLPLAIETAYEGLERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAAT 265
           LDF QAA LPLAIETAYEGLERTGFS GKSILVLNGSGGVGSLVIQLAKQVFGASRVAAT
Sbjct: 209 LDFAQAAALPLAIETAYEGLERTGFSPGKSILVLNGSGGVGSLVIQLAKQVFGASRVAAT 268

Query: 266 SSTRNLEFLKSLGADLAIDYTKDNFEDLPEKFDVVYDAIGQCDRAVKAIKEGGTVVALTG 325
           SSTRNL+ LKSLGADLAIDYTK+NFEDLPEKFDVVYDAIGQCDRAVKA+KEGG+VVALTG
Sbjct: 269 SSTRNLDLLKSLGADLAIDYTKENFEDLPEKFDVVYDAIGQCDRAVKAVKEGGSVVALTG 328

Query: 326 AVTPPGFRFVVTSNGEVLKKLNPYLESGKVKPIIDPKGPFPFSQVVEAFSYIETNKATGK 385
           AVTPPGFRFVVTSNG VL+KLNPYLESGKVKPI+DPKGPF F ++ EAFSY+ETN+ATGK
Sbjct: 329 AVTPPGFRFVVTSNGAVLRKLNPYLESGKVKPIVDPKGPFSFDKLAEAFSYLETNRATGK 388

Query: 386 VVIHPIP 392
           VVIHPIP
Sbjct: 389 VVIHPIP 395

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|307135978|gb|ADN33837.1| alcohol dehydrogenase [Cucumis melo subsp. melo]

 Score =  585 bits (1508), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 302/393 (76%), Positives = 336/393 (85%), Gaps = 11/393 (2%)

Query: 1   METILTTTASKL-TIFHSISSTKLNSFSRKFSVGFSGNKNRKKVTTLKQGSFSYLPLGVQ 59
           M  IL +T S+L + +HSISS    SFS           NRK  T     + S + L V 
Sbjct: 1   MAAILPSTPSQLKSHYHSISSKFCPSFSLSLR-----QSNRK--TIGYSPASSRIRLRVF 53

Query: 60  ASASQAAASSTEAEPTKVGTVPSEMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVV 119
           A++  A AS   +E   V +VPSEMKAW+YGEYGGVDVLKFD  V+VP+VKEDQVLIKVV
Sbjct: 54  ANSQSAPASVVTSE---VASVPSEMKAWVYGEYGGVDVLKFDTSVSVPEVKEDQVLIKVV 110

Query: 120 AAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKEFKEGDEVYGDINEKAL 179
           AAALNPVDGKR  GKFKATDSPLPTVPGYDVAGVVVKVG+QVKE KEGDEVYG+INEKAL
Sbjct: 111 AAALNPVDGKRMLGKFKATDSPLPTVPGYDVAGVVVKVGSQVKELKEGDEVYGNINEKAL 170

Query: 180 EGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLERTGFSAGKSILVL 239
           +GPKQFGSLAEYTAVEE+LLA KPKN+DF+QAAGLPLAIETAYEGLE+T FSAGKSILVL
Sbjct: 171 DGPKQFGSLAEYTAVEEKLLALKPKNIDFIQAAGLPLAIETAYEGLEKTNFSAGKSILVL 230

Query: 240 NGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFEDLPEKFDV 299
           NG+GGVGSLVIQLAK VFGAS+VAAT+ST  LEFLKSLG DLAIDYTK+N EDLPEKFDV
Sbjct: 231 NGAGGVGSLVIQLAKNVFGASKVAATASTGKLEFLKSLGVDLAIDYTKENIEDLPEKFDV 290

Query: 300 VYDAIGQCDRAVKAIKEGGTVVALTGAVTPPGFRFVVTSNGEVLKKLNPYLESGKVKPII 359
           VYDAIGQCD+AVK +KEGG+VVALTGAVTPPGFRFVVTS+G VLKKLNPYLESGKVKPI+
Sbjct: 291 VYDAIGQCDKAVKVVKEGGSVVALTGAVTPPGFRFVVTSDGAVLKKLNPYLESGKVKPIV 350

Query: 360 DPKGPFPFSQVVEAFSYIETNKATGKVVIHPIP 392
           DPKGPFPFSQVVEAF+Y+E+++ATGKVVIHPIP
Sbjct: 351 DPKGPFPFSQVVEAFAYVESSRATGKVVIHPIP 383

Source: Cucumis melo subsp. melo

Species: Cucumis melo

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449434925|ref|XP_004135246.1| PREDICTED: quinone oxidoreductase-like protein At1g23740, chloroplastic-like [Cucumis sativus]

 Score =  578 bits (1490), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 299/393 (76%), Positives = 331/393 (84%), Gaps = 11/393 (2%)

Query: 1   METILTTTASKLTIF-HSISSTKLNSFSRKFSVGFSGNKNRKKVTTLKQGSFSYLPLGVQ 59
           M  IL +T S+L  + H ISS    SFS           NRK +      S   + L V 
Sbjct: 1   MAAILASTPSQLNSYCHFISSKLCPSFSLSLR-----QSNRKTIGYSPVSS--RIRLRVF 53

Query: 60  ASASQAAASSTEAEPTKVGTVPSEMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVV 119
           A++  A AS   +E   V +VPSEMKAW+YGEYGGVDVLKFD  V+VP+VKEDQVLIKVV
Sbjct: 54  ANSQSAPASVVTSE---VASVPSEMKAWVYGEYGGVDVLKFDSSVSVPEVKEDQVLIKVV 110

Query: 120 AAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKEFKEGDEVYGDINEKAL 179
           AAALNPVDGKR  GKFKATDSPLPTVPGYDVAGVVVKVG+QVKE KEGDEVYG+INEKAL
Sbjct: 111 AAALNPVDGKRMLGKFKATDSPLPTVPGYDVAGVVVKVGSQVKELKEGDEVYGNINEKAL 170

Query: 180 EGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLERTGFSAGKSILVL 239
           +GPKQFGSLAEYTAVEE+LLA KPKN+DFVQAAGLPLAIETAYEGLE+T FS GKSILVL
Sbjct: 171 DGPKQFGSLAEYTAVEEKLLAVKPKNIDFVQAAGLPLAIETAYEGLEKTNFSTGKSILVL 230

Query: 240 NGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFEDLPEKFDV 299
           NG+GGVGSLVIQLAK VFGAS+VAAT+ST  LEFLKSLG DLAIDYTK+N EDLPEKFDV
Sbjct: 231 NGAGGVGSLVIQLAKNVFGASKVAATASTGKLEFLKSLGVDLAIDYTKENIEDLPEKFDV 290

Query: 300 VYDAIGQCDRAVKAIKEGGTVVALTGAVTPPGFRFVVTSNGEVLKKLNPYLESGKVKPII 359
           VYDAIGQCD+AVK +KEGG+VVALTGAVTPPGFRFVVTS+G VLKKLNPYLESGKVKPI+
Sbjct: 291 VYDAIGQCDKAVKVVKEGGSVVALTGAVTPPGFRFVVTSDGAVLKKLNPYLESGKVKPIV 350

Query: 360 DPKGPFPFSQVVEAFSYIETNKATGKVVIHPIP 392
           DPKGPF FSQVVEAF+Y+E+++ATGKVVIHPIP
Sbjct: 351 DPKGPFSFSQVVEAFAYVESSRATGKVVIHPIP 383

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449478569|ref|XP_004155355.1| PREDICTED: quinone oxidoreductase-like protein At1g23740, chloroplastic-like [Cucumis sativus]

 Score =  577 bits (1487), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 298/393 (75%), Positives = 332/393 (84%), Gaps = 11/393 (2%)

Query: 1   METILTTTASKL-TIFHSISSTKLNSFSRKFSVGFSGNKNRKKVTTLKQGSFSYLPLGVQ 59
           M  IL +T S+L + +H ISS    SFS           NRK +      S   + L V 
Sbjct: 1   MAAILASTPSQLNSYYHFISSKLCPSFSLSLR-----QSNRKTIGYSPVSS--RIRLRVF 53

Query: 60  ASASQAAASSTEAEPTKVGTVPSEMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVV 119
           A++  A AS   +E   V +VPSEMKAW+YGEYGGVDVLKFD  V+VP+VKEDQVLIKVV
Sbjct: 54  ANSQSAPASVVTSE---VASVPSEMKAWVYGEYGGVDVLKFDSSVSVPEVKEDQVLIKVV 110

Query: 120 AAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKEFKEGDEVYGDINEKAL 179
           AAALNPVDGKR  GKFKATDSPLPTVPGYDVAGVVVKVG+QVKE KEGDEVYG+INEKAL
Sbjct: 111 AAALNPVDGKRMLGKFKATDSPLPTVPGYDVAGVVVKVGSQVKELKEGDEVYGNINEKAL 170

Query: 180 EGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLERTGFSAGKSILVL 239
           +GPKQFGSLAEYTAVEE+LLA KPKN+DFVQAAGLPLAIETAYEGLE+T FS GKSILVL
Sbjct: 171 DGPKQFGSLAEYTAVEEKLLAVKPKNIDFVQAAGLPLAIETAYEGLEKTNFSTGKSILVL 230

Query: 240 NGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFEDLPEKFDV 299
           NG+GGVGSLVIQLAK VFGAS+VAAT+ST  LEFLKSLG DLAIDYTK+N EDLPEKFDV
Sbjct: 231 NGAGGVGSLVIQLAKNVFGASKVAATASTGKLEFLKSLGVDLAIDYTKENIEDLPEKFDV 290

Query: 300 VYDAIGQCDRAVKAIKEGGTVVALTGAVTPPGFRFVVTSNGEVLKKLNPYLESGKVKPII 359
           VYDAIGQCD+AVK +K+GG+VVALTGAVTPPGFRFVVTS+G VLKKLNPYLESGKVKPI+
Sbjct: 291 VYDAIGQCDKAVKVVKKGGSVVALTGAVTPPGFRFVVTSDGAVLKKLNPYLESGKVKPIV 350

Query: 360 DPKGPFPFSQVVEAFSYIETNKATGKVVIHPIP 392
           DPKGPF FSQVVEAF+Y+E+++ATGKVVIHPIP
Sbjct: 351 DPKGPFSFSQVVEAFAYVESSRATGKVVIHPIP 383

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|310747931|dbj|BAJ23910.1| chloroplastic alkenal/one oxidoreductase [Cucumis sativus]

 Score =  576 bits (1485), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 298/393 (75%), Positives = 331/393 (84%), Gaps = 11/393 (2%)

Query: 1   METILTTTASKLTIF-HSISSTKLNSFSRKFSVGFSGNKNRKKVTTLKQGSFSYLPLGVQ 59
           M  IL +T S+L  + H ISS    SFS           NRK +      S   + L V 
Sbjct: 1   MAAILASTPSQLNSYCHFISSKLCPSFSLSLR-----QSNRKTIGYSPVSS--RIRLRVF 53

Query: 60  ASASQAAASSTEAEPTKVGTVPSEMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVV 119
           A++  A AS   +E   V +VPSEMKAW+YGEYGGVDVLKFD  V+VP+VKEDQVLIKVV
Sbjct: 54  ANSQSAPASVVTSE---VASVPSEMKAWVYGEYGGVDVLKFDSSVSVPEVKEDQVLIKVV 110

Query: 120 AAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKEFKEGDEVYGDINEKAL 179
           AAALNPVDGKR  GKFKATDSPLPTVPGYDVAGVVVKVG+QVKE KEGDEVYG+INEKAL
Sbjct: 111 AAALNPVDGKRMLGKFKATDSPLPTVPGYDVAGVVVKVGSQVKELKEGDEVYGNINEKAL 170

Query: 180 EGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLERTGFSAGKSILVL 239
           +GPKQFGSLAEYTAVEE+LLA KPKN+DFVQAAGLPLAIETAYEGLE+T FS GKSILVL
Sbjct: 171 DGPKQFGSLAEYTAVEEKLLAVKPKNIDFVQAAGLPLAIETAYEGLEKTNFSTGKSILVL 230

Query: 240 NGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFEDLPEKFDV 299
           NG+GGVGSLVIQLAK VFGAS+VAAT+ST  LEFLKSLG DLAIDYTK+N EDLPEKFDV
Sbjct: 231 NGAGGVGSLVIQLAKNVFGASKVAATASTGKLEFLKSLGVDLAIDYTKENIEDLPEKFDV 290

Query: 300 VYDAIGQCDRAVKAIKEGGTVVALTGAVTPPGFRFVVTSNGEVLKKLNPYLESGKVKPII 359
           VYDAIGQCD+AVK +K+GG+VVALTGAVTPPGFRFVVTS+G VLKKLNPYLESGKVKPI+
Sbjct: 291 VYDAIGQCDKAVKVVKKGGSVVALTGAVTPPGFRFVVTSDGAVLKKLNPYLESGKVKPIV 350

Query: 360 DPKGPFPFSQVVEAFSYIETNKATGKVVIHPIP 392
           DPKGPF FSQVVEAF+Y+E+++ATGKVVIHPIP
Sbjct: 351 DPKGPFSFSQVVEAFAYVESSRATGKVVIHPIP 383

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224140597|ref|XP_002323668.1| predicted protein [Populus trichocarpa] gi|222868298|gb|EEF05429.1| predicted protein [Populus trichocarpa]

 Score =  561 bits (1446), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 274/309 (88%), Positives = 293/309 (94%)

Query: 84  MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLP 143
           MKA +YGEYGGV+VLKFD+KV+VP+VKEDQVLIKVVAAALNPVD KRRQGKFKATDSPLP
Sbjct: 1   MKACVYGEYGGVEVLKFDDKVSVPEVKEDQVLIKVVAAALNPVDAKRRQGKFKATDSPLP 60

Query: 144 TVPGYDVAGVVVKVGTQVKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKP 203
           TVPGYDVAGVVVKVG QVKE KEGD VYG+INEKALEGPKQFGSLAEYTAVEE+LLA KP
Sbjct: 61  TVPGYDVAGVVVKVGNQVKELKEGDAVYGNINEKALEGPKQFGSLAEYTAVEEKLLALKP 120

Query: 204 KNLDFVQAAGLPLAIETAYEGLERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVA 263
           KNLDF+QAAGLPLAIETAYEGLERTGFSAGKSILVLNG+GGVGSLVIQLAK VFGASR+A
Sbjct: 121 KNLDFIQAAGLPLAIETAYEGLERTGFSAGKSILVLNGAGGVGSLVIQLAKHVFGASRIA 180

Query: 264 ATSSTRNLEFLKSLGADLAIDYTKDNFEDLPEKFDVVYDAIGQCDRAVKAIKEGGTVVAL 323
           ATSST  LE LKSLGADLAIDYTK+NFEDLPEKFDVVYDAIGQCD+AVK +KEGG+VVAL
Sbjct: 181 ATSSTGKLELLKSLGADLAIDYTKENFEDLPEKFDVVYDAIGQCDKAVKVVKEGGSVVAL 240

Query: 324 TGAVTPPGFRFVVTSNGEVLKKLNPYLESGKVKPIIDPKGPFPFSQVVEAFSYIETNKAT 383
           TGAVTPPGFRFVVTSNG  LK LNPYLESGK+KP++DPKGPF FSQV EAFSYIETN+AT
Sbjct: 241 TGAVTPPGFRFVVTSNGNTLKTLNPYLESGKIKPVVDPKGPFTFSQVAEAFSYIETNRAT 300

Query: 384 GKVVIHPIP 392
           GK+VIHPIP
Sbjct: 301 GKIVIHPIP 309

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	392
TAIR|locus:2034802	386	AOR "alkenal/one oxidoreductas	0.811	0.823	0.707	3.7e-119
TIGR_CMR|BA_3566	332	BA_3566 "alcohol dehydrogenase	0.607	0.716	0.325	2.2e-36
TIGR_CMR|BA_3438	335	BA_3438 "alcohol dehydrogenase	0.604	0.707	0.311	1.7e-34
TIGR_CMR|BA_3435	317	BA_3435 "alcohol dehydrogenase	0.747	0.924	0.310	2.7e-29
TIGR_CMR|BA_0176	302	BA_0176 "alcohol dehydrogenase	0.528	0.685	0.305	5.1e-26
TIGR_CMR|CPS_0991	325	CPS_0991 "oxidoreductase, zinc	0.607	0.732	0.301	5.2e-24
ZFIN|ZDB-GENE-040426-1314	387	rtn4ip1 "reticulon 4 interacti	0.545	0.552	0.315	4.9e-21
TAIR|locus:2086335	366	AT3G15090 [Arabidopsis thalian	0.625	0.669	0.273	5.2e-21
UNIPROTKB|Q0VC50	396	RTN4IP1 "Reticulon-4-interacti	0.602	0.595	0.287	8.1e-21
TIGR_CMR|CBU_1023	318	CBU_1023 "alcohol dehydrogenas	0.747	0.921	0.299	1.3e-20

TAIR|locus:2034802 AOR "alkenal/one oxidoreductase" [Arabidopsis thaliana (taxid:3702)]

 Score = 1173 (418.0 bits), Expect = 3.7e-119, P = 3.7e-119
 Identities = 225/318 (70%), Positives = 258/318 (81%)

Query:    75 TKVGTVPSEMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGK 134
             T   ++P EMKAW+Y +YGGVDVLK +  + VP++KEDQVLIKVVAAALNPVD KRRQGK
Sbjct:    69 TADASIPKEMKAWVYSDYGGVDVLKLESNIVVPEIKEDQVLIKVVAAALNPVDAKRRQGK 128

Query:   135 FKATDSPLPTXXXXXXXXXXXXXXXXXKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAV 194
             FKATDSPLPT                 K+ KEGDEVY +++EKALEGPKQFGSLAEYTAV
Sbjct:   129 FKATDSPLPTVPGYDVAGVVVKVGSAVKDLKEGDEVYANVSEKALEGPKQFGSLAEYTAV 188

Query:   195 EERLLAPKPKNLDFVQAAGLPLAIETAYEGLERTGFSAGKXXXXXXXXXXXXXXXXQLAK 254
             EE+LLA KPKN+DF QAAGLPLAIETA EGL RT FSAGK                QLAK
Sbjct:   189 EEKLLALKPKNIDFAQAAGLPLAIETADEGLVRTEFSAGKSILVLNGAGGVGSLVIQLAK 248

Query:   255 QVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFEDLPEKFDVVYDAIGQCDRAVKAI 314
              V+GAS+VAAT+ST  LE ++SLGADLAIDYTK+N EDLP+K+DVV+DAIG CD+AVK I
Sbjct:   249 HVYGASKVAATASTEKLELVRSLGADLAIDYTKENIEDLPDKYDVVFDAIGMCDKAVKVI 308

Query:   315 KEGGTVVALTGAVTPPGFRFVVTSNGEVLKKLNPYLESGKVKPIIDPKGPFPFSQVVEAF 374
             KEGG VVALTGAVTPPGFRFVVTSNG+VLKKLNPY+ESGKVKP++DPKGPFPFS+V +AF
Sbjct:   309 KEGGKVVALTGAVTPPGFRFVVTSNGDVLKKLNPYIESGKVKPVVDPKGPFPFSRVADAF 368

Query:   375 SYIETNKATGKVVIHPIP 392
             SY+ETN ATGKVV++PIP
Sbjct:   369 SYLETNHATGKVVVYPIP 386

GO:0000166 "nucleotide binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA;IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0009409 "response to cold" evidence=IEP;RCA

GO:0010319 "stromule" evidence=IDA

GO:0048046 "apoplast" evidence=IDA

GO:0035671 "enone reductase activity" evidence=IDA

GO:0035798 "2-alkenal reductase (NADP+) activity" evidence=IDA

GO:0000096 "sulfur amino acid metabolic process" evidence=RCA

GO:0006546 "glycine catabolic process" evidence=RCA

GO:0006636 "unsaturated fatty acid biosynthetic process" evidence=RCA

GO:0006733 "oxidoreduction coenzyme metabolic process" evidence=RCA

GO:0006766 "vitamin metabolic process" evidence=RCA

GO:0008652 "cellular amino acid biosynthetic process" evidence=RCA

GO:0009072 "aromatic amino acid family metabolic process" evidence=RCA

GO:0009106 "lipoate metabolic process" evidence=RCA

GO:0009108 "coenzyme biosynthetic process" evidence=RCA

GO:0009117 "nucleotide metabolic process" evidence=RCA

GO:0009416 "response to light stimulus" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0010264 "myo-inositol hexakisphosphate biosynthetic process" evidence=RCA

GO:0015994 "chlorophyll metabolic process" evidence=RCA

GO:0015995 "chlorophyll biosynthetic process" evidence=RCA

GO:0016117 "carotenoid biosynthetic process" evidence=RCA

GO:0019216 "regulation of lipid metabolic process" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0019748 "secondary metabolic process" evidence=RCA

GO:0031408 "oxylipin biosynthetic process" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0044272 "sulfur compound biosynthetic process" evidence=RCA

TIGR_CMR|BA_3566 BA_3566 "alcohol dehydrogenase, zinc-containing" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 300 (110.7 bits), Expect = 2.2e-36, Sum P(2) = 2.2e-36
 Identities = 83/255 (32%), Positives = 127/255 (49%)

Query:    84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKAT-DSPL 142
             MKA +  +YG V  ++  E V +P++ E +VL ++ AA++NP+D K R GK K      +
Sbjct:     1 MKAMIIDKYGKVP-MRMAE-VPIPEINEHEVLAEIHAASINPIDFKIRDGKVKMLLKYEM 58

Query:   143 PTXXXXXXXXXXXXXXXXXKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPK 202
             P                    FK GDE+Y      A     + G+ AEY A+ E  +A K
Sbjct:    59 PLILGNDFAGVIIKVGSKVTRFKIGDEIY------ARPRKNKIGTFAEYIAIHEDDIALK 112

Query:   203 PKNLDFVQAAGLPLAIETAYEGL-ERTGFSAGKXXXXXXXXXXXXXXXXQLAKQVFGASR 261
             PKNL F +AA +PL   T+Y+ L +       +                QLAK + GA+ 
Sbjct:   113 PKNLSFEEAASIPLVGLTSYQALHDIMQLQKDQKILIHAGSGGVGTFAIQLAK-IMGAT- 170

Query:   262 VAATSSTRNLEFLKSLGADLAIDYTKDNFEDLPEKFDVVYDAIG--QCDRAVKAIKEGGT 319
             V  T+S    + +KSLGAD  I+Y  + FE++ + +D V+D IG    +++   IK GG 
Sbjct:   171 VTTTASEAGPDLVKSLGADQIINYKTEKFEEILKDYDAVFDTIGGTTLEKSFDIIKSGGN 230

Query:   320 VVALTGAVTPPGFRF 334
             +V+++G    P  RF
Sbjct:   231 IVSVSGI---PNARF 242

GO:0004024 "alcohol dehydrogenase activity, zinc-dependent" evidence=ISS

GO:0006113 "fermentation" evidence=ISS

TIGR_CMR|BA_3438 BA_3438 "alcohol dehydrogenase, zinc-containing" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 265 (98.3 bits), Expect = 1.7e-34, Sum P(2) = 1.7e-34
 Identities = 81/260 (31%), Positives = 123/260 (47%)

Query:    84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLP 143
             MKA +   +G   V + +E V+ P++    VLI V A ++NP+D K R G   A     P
Sbjct:     1 MKAQIIHSFGDSSVFQLEE-VSKPKLLPGHVLIDVKATSVNPIDTKMRSGAVSAVAPEFP 59

Query:   144 TXXXXXXXXXXXXXXXXXKEFKEGDEVYGDINEKALEGPKQFG-SLAEYTAVEERLLAPK 202
                                +FK GDEVYG        G K+ G +LAE+   + RL+A K
Sbjct:    60 AILHGDVAGIVIEVGEGVSKFKCGDEVYG-----CAGGFKETGGALAEFMLADARLIAHK 114

Query:   203 PKNLDFVQAAGLPLAIETAYEGL-ERTGFSAGKXXXXXXXXXXXXXXXXQLAKQVFGASR 261
             P N+   +AA LPL   TA+E L +R    +G+                QLAK   GA+ 
Sbjct:   115 PNNITMEEAAALPLVAITAWESLFDRANIKSGQNVLIHGATGGVGHVAIQLAKWA-GAN- 172

Query:   262 VAATSSTRN-LEFLKSLGADLAIDYTKDNFEDLPEK----------FDVVYDAIG--QCD 308
             V  T+S +N +E    LGAD+AI+Y +++ ++  ++          F+V++D +G    D
Sbjct:   173 VFTTASQQNKMEIAHRLGADVAINYKEESVQESVQEYVQKHTNGNGFEVIFDTVGGKNLD 232

Query:   309 RAVKAIKEGGTVVALTGAVT 328
              + +A    GTVV +    T
Sbjct:   233 NSFEAAAVNGTVVTIAARST 252

GO:0004024 "alcohol dehydrogenase activity, zinc-dependent" evidence=ISS

GO:0006113 "fermentation" evidence=ISS

TIGR_CMR|BA_3435 BA_3435 "alcohol dehydrogenase, zinc-containing" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 325 (119.5 bits), Expect = 2.7e-29, P = 2.7e-29
 Identities = 101/325 (31%), Positives = 152/325 (46%)

Query:    84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDS-PL 142
             MKA    +YG   VL+  E  T P + ++ VLI+V AA +NPVD K R+G  +   S   
Sbjct:     1 MKAIGLTQYGDKSVLQEIEMQT-PLLGDNDVLIEVYAAGVNPVDWKIREGLLQDVISYDF 59

Query:   143 PTXXXXXXXXXXXXXXXXXKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPK 202
             P                    FK GDEVY   +   +E   + G+ AEY AV+E+ +A K
Sbjct:    60 PLVLGWDVAGVVAAIGKNVTVFKVGDEVY---SRPDIE---RNGTYAEYVAVDEKYVAKK 113

Query:   203 PKNLDFVQAAGLPLAIETAYEGLER-TGFSAGKXXXXXXXXXXXXXXXXQLAKQVFGASR 261
             P+NL F +AA +PL   T+++ L +      G                 QLAK  FGA  
Sbjct:   114 PRNLSFEEAASIPLVGLTSWQSLVKFANVQKGNKVLIHAGSGGIGTFAIQLAKS-FGA-H 171

Query:   262 VAATSSTRNLEFLKSLGADLAIDYTKDNFEDLPEKFDVVYDAIGQ--CDRAVKAIKEGGT 319
             VA T+ST+N++F+K LGAD  +DY  ++F  L   +++V+D +G      + K +   G 
Sbjct:   172 VATTTSTKNMQFVKDLGADTVVDYKTEDFSLLLHNYNIVFDVLGGDVLKDSYKVLAPNGK 231

Query:   320 VVALTGAVTPPGFRFVVTS----------------NGEVLKKLNPYLESGKVKPIIDPKG 363
             + ++ G   P G     T                 NG  L  +   +E GK+KP++    
Sbjct:   232 LASIYG---PKGMEIPQTEISREKNIESDHIFTEPNGYELSLITELIEGGKIKPVVTHVL 288

Query:   364 PFPFSQVVEAFSYIETNKATGKVVI 388
             P     V +A    E+ +A GK+V+
Sbjct:   289 PLHVEGVKKAHHISESERARGKIVL 313

GO:0004024 "alcohol dehydrogenase activity, zinc-dependent" evidence=ISS

GO:0006113 "fermentation" evidence=ISS

TIGR_CMR|BA_0176 BA_0176 "alcohol dehydrogenase, zinc-containing" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 249 (92.7 bits), Expect = 5.1e-26, Sum P(2) = 5.1e-26
 Identities = 70/229 (30%), Positives = 115/229 (50%)

Query:   163 EFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEER-LLAPKPKNLDFVQAAGLPLAIETA 221
             +FK+GD+++  + E  L      G  AEYT V E  L+  KP N+ + +AA +P    +A
Sbjct:    90 QFKKGDQIFA-LTELNL------GGYAEYTCVHESGLITLKPTNVTYEEAAVIPFGGTSA 142

Query:   222 YEGLERTGFSAGKXXXXXXXXXXXXXXXXQLAKQVFGASRVAATSSTRNLEFLKSLGADL 281
                L ++    G+                QLAK  FGA+ V A  S  N E ++SLGAD 
Sbjct:   143 LHFLRKSRIKKGQQVLIYGASGSVGTAAIQLAKY-FGAT-VTAVCSNSNFELVQSLGADK 200

Query:   282 AIDYTKDNFEDLPEKFDVVYDAIGQCDRAV--KAIKEGGTVVALTGAVTPPGFRFVVTSN 339
              IDYTK++F    E++D+++DA+G+  +++  + +   G  V++ G +       ++   
Sbjct:   201 VIDYTKEDFTKRRERYDIIFDAVGKHKKSLCKQVLAPNGKYVSVNGMMAKVSKEDMI--- 257

Query:   340 GEVLKKLNPYLESGKVKPIIDPKGPFPFSQVVEAFSYIETNKATGKVVI 388
               +LKKL    E+  +KP+ID    +   ++ EA  Y+E     G V I
Sbjct:   258 --LLKKLT---ETEHLKPVIDRT--YRLEEIAEAHMYVEIGHKKGNVSI 299

GO:0004024 "alcohol dehydrogenase activity, zinc-dependent" evidence=ISS

GO:0006113 "fermentation" evidence=ISS

TIGR_CMR|CPS_0991 CPS_0991 "oxidoreductase, zinc-binding" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 228 (85.3 bits), Expect = 5.2e-24, Sum P(2) = 5.2e-24
 Identities = 77/255 (30%), Positives = 111/255 (43%)

Query:    84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLP 143
             MKA +  E G  +V +  EK   P  K   ++++V A ++NP+D   R  +   + + LP
Sbjct:     1 MKAMIIKEIGSTEVFQLAEKAK-PVAKAGHMVVEVKATSVNPIDTMLRSIELPWSAN-LP 58

Query:   144 TXXXXXXXXXXXXXXXXXKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKP 203
                                 F  GDEVYG      + G    G+LAE+  V+  L+A KP
Sbjct:    59 EILHGDVAGIVCEVGEGVTGFNVGDEVYGMAG--GINGVD--GALAEFMLVDALLMANKP 114

Query:   204 KNLDFVQAAGLPLAIETAYEGL-ERTGFSAGKXXXXXXXXXXXXXXXXQLAKQVFGASRV 262
             K L   QAA LPL   T+YE L E+     G                 QLAK V GA+ V
Sbjct:   115 KTLTMKQAAALPLVAITSYEALVEKMNVQQGDKVLIHGATGGVGHIAVQLAK-VLGAN-V 172

Query:   263 AATSSTRNLEFLKSLGADLAIDYTKDNFEDLPEK------FDVVYDAIG--QCDRAVKAI 314
              +T S+ N    K+LGAD  +DY  ++  D          FD V+D +     +++ +A 
Sbjct:   173 TSTYSSANEVLAKTLGADNLVDYKTESVADYVRAYTDGIGFDKVFDTVAGDNIEKSFEAA 232

Query:   315 KEGGTVVALTGAVTP 329
             K  G V  +     P
Sbjct:   233 KLNGHVATILPIADP 247

GO:0008152 "metabolic process" evidence=ISS

GO:0008270 "zinc ion binding" evidence=ISS

GO:0016491 "oxidoreductase activity" evidence=ISS

ZFIN|ZDB-GENE-040426-1314 rtn4ip1 "reticulon 4 interacting protein 1" [Danio rerio (taxid:7955)]

 Score = 211 (79.3 bits), Expect = 4.9e-21, Sum P(2) = 4.9e-21
 Identities = 77/244 (31%), Positives = 108/244 (44%)

Query:    84 MKAWLYGEYGGVDVLKFDEKVTVPQVK-EDQVLIKVVAAALNPVDGKRRQGKFKATDS-- 140
             M AW+  +YG  DVL+F +   +P +   ++V++KV AA LNP+D   R G   AT +  
Sbjct:    29 MPAWVIDKYGKNDVLRFTKNAALPIIHYPNEVVVKVHAAGLNPIDISMRGGYGAATMAMK 88

Query:   141 --PL---------PTXXXXXXXXXXXXXXXXXKEFKEGDEVYGDINEKALEGPKQFGSLA 189
               PL         P                  K FK GD+V+  I       P + GSLA
Sbjct:    89 RDPLNISQSGGEFPLILGRDVSGEIMECGLDVKYFKPGDQVWAAIP------PWKQGSLA 142

Query:   190 EYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLERTGF-----SAGKXXXXXXXXXX 244
             E+  V    ++ KPK+L   +AA +P    TA+  +  TG      SA K          
Sbjct:   143 EFVVVSGNEVSHKPKSLRHDEAASIPYVAATAWSAIVNTGGLNKDNSAKKRVLILGGSGG 202

Query:   245 XXXXXXQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFE-DLP--EKFDVVY 301
                   Q+ K  +GA  V  T S      ++ LGAD  +DYT    E  L   EKFD++ 
Sbjct:   203 VGTFAIQMVK-AWGA-HVTVTCSQNAERLVRDLGADDVVDYTAGPVEKQLKNLEKFDLIL 260

Query:   302 DAIG 305
             D+IG
Sbjct:   261 DSIG 264

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

TAIR|locus:2086335 AT3G15090 [Arabidopsis thaliana (taxid:3702)]

 Score = 237 (88.5 bits), Expect = 5.2e-21, Sum P(2) = 5.2e-21
 Identities = 71/260 (27%), Positives = 119/260 (45%)

Query:    85 KAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSP-LP 143
             +A +   +GG +V +  E V VP +  ++VL+K  A ++NP+D + R G  ++   P LP
Sbjct:    33 RAVILPRFGGPEVFELRENVPVPNLNPNEVLVKAKAVSVNPLDCRIRAGYGRSVFQPHLP 92

Query:   144 TXXXXXXXXXXXXXXXXXKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKP 203
                               K  K G EV+G ++  AL G     +  +Y  + E  L  KP
Sbjct:    93 IIVGRDVSGEVAAIGTSVKSLKVGQEVFGALHPTALRG-----TYTDYGILSEDELTEKP 147

Query:   204 KNLDFVQAAGLPLAIETAYEGLERTG-FSAGKXXXXXXXXXXXXXXXXQLAKQVFGASRV 262
              ++  V+A+ +P A  TA+  L+     + G+                QLA  V     V
Sbjct:   148 SSISHVEASAIPFAALTAWRALKSNARITEGQRLLVFGGGGAVGFSAIQLA--VASGCHV 205

Query:   263 AATSSTRNLEFLKSLGADLAIDYTKDNFE-DLPEKFDVVYDAIG--QCDR-AVKAIKEGG 318
              A+   +  + + + GA+ A+DYT ++ E  +  KFD V D IG  + +R  +  +++GG
Sbjct:   206 TASCVGQTKDRILAAGAEQAVDYTTEDIELAVKGKFDAVLDTIGGPETERIGINFLRKGG 265

Query:   319 TVVALTG--AVTPPGFRFVV 336
               + L G  A     + FVV
Sbjct:   266 NYMTLQGEAASLTDKYGFVV 285

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

UNIPROTKB|Q0VC50 RTN4IP1 "Reticulon-4-interacting protein 1, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 206 (77.6 bits), Expect = 8.1e-21, Sum P(2) = 8.1e-21
 Identities = 78/271 (28%), Positives = 117/271 (43%)

Query:    84 MKAWLYGEYGGVDVLKFDEKVTVPQVK-EDQVLIKVVAAALNPVDGKRRQGKFKATD--- 139
             M AW+  +YG  +VL+F + + +P +   ++V+IKV AA++NP+D   R G + AT    
Sbjct:    43 MPAWVIDKYGSNEVLRFTQNMMIPMIHYPNEVIIKVHAASINPIDVNMRSG-YGATALNM 101

Query:   140 --SPL---------PTXXXXXXXXXXXXXXXXXKEFKEGDEVYGDINEKALEGPKQFGSL 188
                PL         P                  + FK GDEV+  +       P + G+L
Sbjct:   102 KRDPLHVKIKGEEFPLTLGRDVSGVVMECGLDVRYFKPGDEVWAAVP------PWKQGTL 155

Query:   189 AEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLERTG-FSAGKXXXXXXXXXXXXX 247
             +E+  V    ++ KP++L   QAA LP    TA+  + + G  +                
Sbjct:   156 SEFVVVSGNEVSHKPRSLTHTQAASLPYVALTAWSAINKVGGLNDRNCTGKRVLILGASG 215

Query:   248 XXXQLAKQVFGA--SRVAATSSTRNLEFLKSLGADLAIDYTKDNFE---DLPEKFDVVYD 302
                  A QV  A  + V A  S    E ++ LGAD  IDY   N E      + FD + D
Sbjct:   216 GVGTFAIQVMKAWDAHVTAVCSQDASELVRKLGADDVIDYKSGNVEAQLKSSKPFDFILD 275

Query:   303 AIGQCDR--AVKAIKE--GGTVVALTGAVTP 329
              +G      A+K +K+  G T V L   VTP
Sbjct:   276 NVGGSTETWALKFLKKWSGATYVTL---VTP 303

GO:0005739 "mitochondrion" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

TIGR_CMR|CBU_1023 CBU_1023 "alcohol dehydrogenase, zinc-containing" [Coxiella burnetii RSA 493 (taxid:227377)]

 Score = 243 (90.6 bits), Expect = 1.3e-20, P = 1.3e-20
 Identities = 97/324 (29%), Positives = 141/324 (43%)

Query:    83 EMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGK-F--KATD 139
             EMKA  + ++G   VLK  +  T P+ +++Q+LIKV AA+LNP+D K R G  F  K   
Sbjct:     3 EMKAIQFDQFGPPKVLKLVDTPT-PEYRKNQMLIKVHAASLNPIDYKTRNGSGFVAKKLK 61

Query:   140 SPLPTXXXXXXXXXXXXXXXXXKEFKEGDEVYGDINEKALEG-PKQFGSLAEYTAVEERL 198
             + LP+                      GD+V G      + G P      AEY       
Sbjct:    62 NNLPSGLGYDFSGEVIELGSDVNNVNIGDKVMG------IAGFPDHPCCYAEYVCASPDT 115

Query:   199 LAPKPKNLDFVQAAGLPLAIETAYEGLERTGFSAGKXXXXXXXXXXXXXXXXQLAKQVFG 258
             +  K + L F+QAA LP A  TA + L +     G                 QLAKQ   
Sbjct:   116 IIQKLEKLSFLQAASLPTAGLTALQALNQAEVKQGDVVLIHAGAGGVGHLAIQLAKQK-- 173

Query:   259 ASRVAATSSTRNLEFLKSLGADLAIDYTKDNFE-DLPEKFDVVYDAIGQCDRAVKAI--- 314
              + V  T+S RN  FLK+LGA+  I+Y +++F   +    D V D +G  D  +++I   
Sbjct:   174 GTTVITTASKRNHAFLKALGAEQCINYHEEDFLLAISTPVDAVIDLVGG-DVGIQSIDCL 232

Query:   315 KEGGTVVAL----TGAVTPPG-------FRFVVTSNGEVLKKLNPYLESGKVKPIIDPKG 363
             KE G +V++     G V           F  +   N E L  L   +   K++  I+   
Sbjct:   233 KETGCIVSVPTITAGRVIEVAKQKHRRAFGLLKQFNIEELHYLGKLVSEDKLR--IEISR 290

Query:   364 PFPFSQVVEAFSYIETNKATGKVV 387
              F  S+ V A   +ET    GK+V
Sbjct:   291 IFQLSEAVTAHELLETGHVRGKLV 314

GO:0004024 "alcohol dehydrogenase activity, zinc-dependent" evidence=ISS

GO:0006113 "fermentation" evidence=ISS

GO:0008270 "zinc ion binding" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9ZUC1	QORL_ARATH	1, ., -, ., -, ., -	0.8063	0.8035	0.8160	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.1.1	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	392
cd05289	309	cd05289, MDR_like_2, alcohol dehydrogenase and qui	1e-108
cd08267	319	cd08267, MDR1, Medium chain dehydrogenases/reducta	8e-93
cd08272	326	cd08272, MDR6, Medium chain dehydrogenases/reducta	2e-87
COG0604	326	COG0604, Qor, NADPH:quinone reductase and related	2e-76
cd08248	350	cd08248, RTN4I1, Human Reticulon 4 Interacting Pro	1e-72
cd05276	323	cd05276, p53_inducible_oxidoreductase, PIG3 p53-in	6e-62
cd08253	325	cd08253, zeta_crystallin, Zeta-crystallin with NAD	1e-59
cd08252	336	cd08252, AL_MDR, Arginate lyase and other MDR fami	1e-59
cd08266	342	cd08266, Zn_ADH_like1, Alcohol dehydrogenases of t	3e-59
cd08241	323	cd08241, QOR1, Quinone oxidoreductase (QOR)	2e-58
cd08249	339	cd08249, enoyl_reductase_like, enoyl_reductase_lik	1e-57
cd08271	325	cd08271, MDR5, Medium chain dehydrogenases/reducta	3e-56
cd08268	328	cd08268, MDR2, Medium chain dehydrogenases/reducta	8e-53
TIGR02824	325	TIGR02824, quinone_pig3, putative NAD(P)H quinone	2e-51
cd05188	271	cd05188, MDR, Medium chain reductase/dehydrogenase	3e-50
cd08276	336	cd08276, MDR7, Medium chain dehydrogenases/reducta	7e-49
cd08247	352	cd08247, AST1_like, AST1 is a cytoplasmic protein	7e-47
COG1064	339	COG1064, AdhP, Zn-dependent alcohol dehydrogenases	4e-46
cd05286	320	cd05286, QOR2, Quinone oxidoreductase (QOR)	9e-45
cd08275	337	cd08275, MDR3, Medium chain dehydrogenases/reducta	6e-44
PTZ00354	334	PTZ00354, PTZ00354, alcohol dehydrogenase; Provisi	8e-44
cd08274	350	cd08274, MDR9, Medium chain dehydrogenases/reducta	9e-44
cd08234	334	cd08234, threonine_DH_like, L-threonine dehydrogen	4e-41
cd08259	332	cd08259, Zn_ADH5, Alcohol dehydrogenases of the MD	6e-40
cd08273	331	cd08273, MDR8, Medium chain dehydrogenases/reducta	9e-40
TIGR02817	336	TIGR02817, adh_fam_1, zinc-binding alcohol dehydro	3e-39
cd08251	303	cd08251, polyketide_synthase, polyketide synthase	7e-36
cd08264	325	cd08264, Zn_ADH_like2, Alcohol dehydrogenases of t	3e-35
cd05195	293	cd05195, enoyl_red, enoyl reductase of polyketide	7e-34
cd08236	343	cd08236, sugar_DH, NAD(P)-dependent sugar dehydrog	8e-33
cd08245	330	cd08245, CAD, Cinnamyl alcohol dehydrogenases (CAD	8e-33
cd08254	338	cd08254, hydroxyacyl_CoA_DH, 6-hydroxycyclohex-1-e	6e-32
cd05284	340	cd05284, arabinose_DH_like, D-arabinose dehydrogen	2e-31
cd08243	320	cd08243, quinone_oxidoreductase_like_1, Quinone ox	4e-31
cd08246	393	cd08246, crotonyl_coA_red, crotonyl-CoA reductase	1e-30
smart00829	287	smart00829, PKS_ER, Enoylreductase	9e-30
TIGR01751	398	TIGR01751, crot-CoA-red, crotonyl-CoA reductase	1e-28
cd08297	341	cd08297, CAD3, Cinnamyl alcohol dehydrogenases (CA	2e-28
cd05282	323	cd05282, ETR_like, 2-enoyl thioester reductase-lik	5e-28
cd08244	324	cd08244, MDR_enoyl_red, Possible enoyl reductase	3e-27
cd08235	343	cd08235, iditol_2_DH_like, L-iditol 2-dehydrogenas	8e-27
cd05285	343	cd05285, sorbitol_DH, Sorbitol dehydrogenase	6e-26
PRK13771	334	PRK13771, PRK13771, putative alcohol dehydrogenase	8e-26
cd08270	305	cd08270, MDR4, Medium chain dehydrogenases/reducta	2e-25
cd08298	329	cd08298, CAD2, Cinnamyl alcohol dehydrogenases (CA	5e-25
cd05280	325	cd05280, MDR_yhdh_yhfp, Yhdh and yhfp-like putativ	9e-25
cd08255	277	cd08255, 2-desacetyl-2-hydroxyethyl_bacteriochloro	1e-24
cd08261	337	cd08261, Zn_ADH7, Alcohol dehydrogenases of the MD	1e-24
cd08240	350	cd08240, 6_hydroxyhexanoate_dh_like, 6-hydroxyhexa	2e-24
cd08250	329	cd08250, Mgc45594_like, Mgc45594 gene product and	5e-24
cd08260	345	cd08260, Zn_ADH6, Alcohol dehydrogenases of the MD	7e-23
cd08290	341	cd08290, ETR, 2-enoyl thioester reductase (ETR)	1e-22
cd08239	339	cd08239, THR_DH_like, L-threonine dehydrogenase (T	4e-22
cd08233	351	cd08233, butanediol_DH_like, (2R,3R)-2,3-butanedio	2e-21
cd08263	367	cd08263, Zn_ADH10, Alcohol dehydrogenases of the M	3e-21
pfam13602	129	pfam13602, ADH_zinc_N_2, Zinc-binding dehydrogenas	7e-21
cd08258	306	cd08258, Zn_ADH4, Alcohol dehydrogenases of the MD	1e-20
cd05281	341	cd05281, TDH, Threonine dehydrogenase	1e-19
cd08269	312	cd08269, Zn_ADH9, Alcohol dehydrogenases of the MD	1e-19
COG1063	350	COG1063, Tdh, Threonine dehydrogenase and related	1e-19
cd05288	329	cd05288, PGDH, Prostaglandin dehydrogenases	2e-19
cd08232	339	cd08232, idonate-5-DH, L-idonate 5-dehydrogenase	2e-18
cd08288	324	cd08288, MDR_yhdh, Yhdh putative quinone oxidoredu	6e-18
TIGR02823	323	TIGR02823, oxido_YhdH, putative quinone oxidoreduc	1e-17
cd08296	333	cd08296, CAD_like, Cinnamyl alcohol dehydrogenases	1e-16
cd05278	347	cd05278, FDH_like, Formaldehyde dehydrogenases	1e-16
cd08279	363	cd08279, Zn_ADH_class_III, Class III alcohol dehyd	2e-16
cd05279	365	cd05279, Zn_ADH1, Liver alcohol dehydrogenase and	3e-16
COG2130	340	COG2130, COG2130, Putative NADP-dependent oxidored	3e-15
cd08284	344	cd08284, FDH_like_2, Glutathione-dependent formald	4e-15
PRK05396	341	PRK05396, tdh, L-threonine 3-dehydrogenase; Valida	8e-15
cd08289	326	cd08289, MDR_yhfp_like, Yhfp putative quinone oxid	1e-14
cd08291	324	cd08291, ETR_like_1, 2-enoyl thioester reductase (	1e-14
cd08242	319	cd08242, MDR_like, Medium chain dehydrogenases/red	2e-14
cd05283	337	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CA	2e-14
pfam08240	108	pfam08240, ADH_N, Alcohol dehydrogenase GroES-like	3e-14
TIGR00692	340	TIGR00692, tdh, L-threonine 3-dehydrogenase	2e-13
cd08285	351	cd08285, NADP_ADH, NADP(H)-dependent alcohol dehyd	5e-13
PRK09422	338	PRK09422, PRK09422, ethanol-active dehydrogenase/a	1e-12
PRK10754	327	PRK10754, PRK10754, quinone oxidoreductase, NADPH-	2e-12
pfam00107	131	pfam00107, ADH_zinc_N, Zinc-binding dehydrogenase	3e-12
cd08265	384	cd08265, Zn_ADH3, Alcohol dehydrogenases of the MD	2e-11
PLN02586	360	PLN02586, PLN02586, probable cinnamyl alcohol dehy	4e-11
PRK09880	343	PRK09880, PRK09880, L-idonate 5-dehydrogenase; Pro	5e-11
COG1062	366	COG1062, AdhC, Zn-dependent alcohol dehydrogenases	5e-11
cd08231	361	cd08231, MDR_TM0436_like, Hypothetical enzyme TM04	8e-11
PLN02702	364	PLN02702, PLN02702, L-idonate 5-dehydrogenase	1e-10
PLN02514	357	PLN02514, PLN02514, cinnamyl-alcohol dehydrogenase	1e-09
PLN02178	375	PLN02178, PLN02178, cinnamyl-alcohol dehydrogenase	4e-09
PRK10309	347	PRK10309, PRK10309, galactitol-1-phosphate dehydro	7e-09
cd08277	365	cd08277, liver_alcohol_DH_like, Liver alcohol dehy	2e-08
TIGR03989	369	TIGR03989, Rxyl_3153, oxidoreductase, Rxyl_3153 fa	2e-08
cd08281	371	cd08281, liver_ADH_like1, Zinc-dependent alcohol d	4e-08
cd08262	341	cd08262, Zn_ADH8, Alcohol dehydrogenases of the MD	7e-08
cd08294	329	cd08294, leukotriene_B4_DH_like, 13-PGR is a bifun	2e-07
cd08230	355	cd08230, glucose_DH, Glucose dehydrogenase	2e-07
cd08293	345	cd08293, PTGR2, Prostaglandin reductase	3e-07
TIGR01202	308	TIGR01202, bchC, 2-desacetyl-2-hydroxyethyl bacter	1e-06
TIGR02825	325	TIGR02825, B4_12hDH, leukotriene B4 12-hydroxydehy	2e-06
cd08278	365	cd08278, benzyl_alcohol_DH, Benzyl alcohol dehydro	2e-06
TIGR03201	349	TIGR03201, dearomat_had, 6-hydroxycyclohex-1-ene-1	4e-06
cd08292	324	cd08292, ETR_like_2, 2-enoyl thioester reductase (	9e-06
cd08282	375	cd08282, PFDH_like, Pseudomonas putida aldehyde-di	1e-05
cd08295	338	cd08295, double_bond_reductase_like, Arabidopsis a	2e-05
PLN03154	348	PLN03154, PLN03154, putative allyl alcohol dehydro	3e-05
cd08299	373	cd08299, alcohol_DH_class_I_II_IV, class I, II, IV	7e-05
cd08300	368	cd08300, alcohol_DH_class_III, class III alcohol d	2e-04
cd08238	410	cd08238, sorbose_phosphate_red, L-sorbose-1-phosph	3e-04
cd08256	350	cd08256, Zn_ADH2, Alcohol dehydrogenases of the MD	3e-04
cd08283	386	cd08283, FDH_like_1, Glutathione-dependent formald	5e-04
cd08286	345	cd08286, FDH_like_ADH2, formaldehyde dehydrogenase	5e-04
TIGR02818	368	TIGR02818, adh_III_F_hyde, S-(hydroxymethyl)glutat	6e-04
TIGR03451	358	TIGR03451, mycoS_dep_FDH, S-(hydroxymethyl)mycothi	0.001

>gnl|CDD|176191 cd05289, MDR_like_2, alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases

 Score =  320 bits (822), Expect = e-108
 Identities = 134/320 (41%), Positives = 178/320 (55%), Gaps = 26/320 (8%)

Query: 84  MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFK-ATDSPL 142
           MKA    EYGG +VL+  + V  P+    +VL+KV AA +NPVD K R+G  K A    L
Sbjct: 1   MKAVRIHEYGGPEVLELAD-VPTPEPGPGEVLVKVHAAGVNPVDLKIREGLLKAAFPLTL 59

Query: 143 PTVPGYDVAGVVVKVGTQVKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPK 202
           P +PG+DVAGVVV VG  V  FK GDEV+G           + G+ AEY  V    LA K
Sbjct: 60  PLIPGHDVAGVVVAVGPGVTGFKVGDEVFGMTPFT------RGGAYAEYVVVPADELALK 113

Query: 203 PKNLDFVQAAGLPLAIETAYEGLERTG-FSAGKSILVLNGSGGVGSLVIQLAKQVFGASR 261
           P NL F +AA LPLA  TA++ L   G   AG+++L+   +GGVGS  +QLAK   GA R
Sbjct: 114 PANLSFEEAAALPLAGLTAWQALFELGGLKAGQTVLIHGAAGGVGSFAVQLAKA-RGA-R 171

Query: 262 VAATSSTRNLEFLKSLGADLAIDYTKDNFE--DLPEKFDVVYDAIGQ--CDRAVKAIKEG 317
           V AT+S  N +FL+SLGAD  IDYTK +FE    P   D V D +G     R++  +K G
Sbjct: 172 VIATASAANADFLRSLGADEVIDYTKGDFERAAAPGGVDAVLDTVGGETLARSLALVKPG 231

Query: 318 GTVVALTGAVTPP---------GFRFVVTSNGEVLKKLNPYLESGKVKPIIDPKGPFPFS 368
           G +V++ G                   V  +GE L +L   +E+GK++P++D    FP  
Sbjct: 232 GRLVSIAGPPPAEQAAKRRGVRAGFVFVEPDGEQLAELAELVEAGKLRPVVD--RVFPLE 289

Query: 369 QVVEAFSYIETNKATGKVVI 388
              EA   +E+  A GKVV+
Sbjct: 290 DAAEAHERLESGHARGKVVL 309

Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 309

>gnl|CDD|176228 cd08267, MDR1, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score =  281 bits (720), Expect = 8e-93
 Identities = 126/331 (38%), Positives = 176/331 (53%), Gaps = 38/331 (11%)

Query: 84  MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFK-ATDSPL 142
           +    YG      +L  + +V +P  K  +VL+KV AA++NPVD K R+G  K     P 
Sbjct: 1   VVYTRYG--SPEVLLLLEVEVPIPTPKPGEVLVKVHAASVNPVDWKLRRGPPKLLLGRPF 58

Query: 143 PTVPGYDVAGVVVKVGTQVKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPK 202
           P +PG D AG VV VG+ V  FK GDEV+G +       PK  G+LAEY    E  LA K
Sbjct: 59  PPIPGMDFAGEVVAVGSGVTRFKVGDEVFGRL------PPKGGGALAEYVVAPESGLAKK 112

Query: 203 PKNLDFVQAAGLPLAIETAYEGLERTGFS-AGKSILVLNGSGGVGSLVIQLAKQVFGASR 261
           P+ + F +AA LP+A  TA + L   G    G+ +L+   SGGVG+  +Q+AK   GA  
Sbjct: 113 PEGVSFEEAAALPVAGLTALQALRDAGKVKPGQRVLINGASGGVGTFAVQIAKA-LGA-H 170

Query: 262 VAATSSTRNLEFLKSLGADLAIDYTKDNFEDL---PEKFDVVYDAIGQCD----RAVKAI 314
           V    STRN E ++SLGAD  IDYT ++F  L    EK+DV++DA+G       RA  A+
Sbjct: 171 VTGVCSTRNAELVRSLGADEVIDYTTEDFVALTAGGEKYDVIFDAVGNSPFSLYRASLAL 230

Query: 315 KEGGTVVALTGAVTPPGFR-----------------FVVTSNGEVLKKLNPYLESGKVKP 357
           K GG  V++ G  +                      F+   N E L++L   +E GK+KP
Sbjct: 231 KPGGRYVSVGGGPSGLLLVLLLLPLTLGGGGRRLKFFLAKPNAEDLEQLAELVEEGKLKP 290

Query: 358 IIDPKGPFPFSQVVEAFSYIETNKATGKVVI 388
           +ID    +P     EA+  +++ +A GKVVI
Sbjct: 291 VID--SVYPLEDAPEAYRRLKSGRARGKVVI 319

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 319

>gnl|CDD|176233 cd08272, MDR6, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score =  267 bits (685), Expect = 2e-87
 Identities = 129/334 (38%), Positives = 182/334 (54%), Gaps = 39/334 (11%)

Query: 84  MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLP 143
           MKA +   +GG +V +  E V  PQ    QVL++V A+ +NP+D K R+G   A   PLP
Sbjct: 1   MKALVLESFGGPEVFELRE-VPRPQPGPGQVLVRVHASGVNPLDTKIRRGGAAARP-PLP 58

Query: 144 TVPGYDVAGVVVKVGTQVKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKP 203
            + G DVAGVV  VG  V  F+ GDEVYG             GSLAEY  V+ RLLA KP
Sbjct: 59  AILGCDVAGVVEAVGEGVTRFRVGDEVYGCAGGLGGLQ----GSLAEYAVVDARLLALKP 114

Query: 204 KNLDFVQAAGLPLAIETAYEGL-ERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRV 262
            NL   +AA LPL   TA+EGL +R    AG+++L+  G+GGVG + +QLAK   GA RV
Sbjct: 115 ANLSMREAAALPLVGITAWEGLVDRAAVQAGQTVLIHGGAGGVGHVAVQLAKA-AGA-RV 172

Query: 263 AATSSTRNLEFLKSLGADLAIDYTKDNFEDLPEK------FDVVYDAIG--QCDRAVKAI 314
            AT+S+    F +SLGAD  I Y +    +   +      FDVV+D +G    D + +A+
Sbjct: 173 YATASSEKAAFARSLGADPIIYYRET-VVEYVAEHTGGRGFDVVFDTVGGETLDASFEAV 231

Query: 315 KEGGTVVAL----TGAVTPPGFR-----FVVT-----------SNGEVLKKLNPYLESGK 354
              G VV++    T  + P  FR      V T            +GE+L++    +E G+
Sbjct: 232 ALYGRVVSILGGATHDLAPLSFRNATYSGVFTLLPLLTGEGRAHHGEILREAARLVERGQ 291

Query: 355 VKPIIDPKGPFPFSQVVEAFSYIETNKATGKVVI 388
           ++P++DP+  FP  +   A + +E+  A GK+VI
Sbjct: 292 LRPLLDPR-TFPLEEAAAAHARLESGSARGKIVI 324

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 326

>gnl|CDD|223677 COG0604, Qor, NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]

 Score =  239 bits (611), Expect = 2e-76
 Identities = 121/337 (35%), Positives = 166/337 (49%), Gaps = 41/337 (12%)

Query: 84  MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLP 143
           MKA +  E+GG +VLK   +V  P+    +VL++V AA +NP+D   RQG       PLP
Sbjct: 1   MKAVVVEEFGGPEVLKV-VEVPEPEPGPGEVLVRVKAAGVNPIDVLVRQGLAPPVR-PLP 58

Query: 144 TVPGYDVAGVVVKVGTQVKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKP 203
            +PG + AGVVV VG+ V  FK GD V       AL G  + G  AEY  V    L P P
Sbjct: 59  FIPGSEAAGVVVAVGSGVTGFKVGDRVA------ALGGVGRDGGYAEYVVVPADWLVPLP 112

Query: 204 KNLDFVQAAGLPLAIETAYEGLERT-GFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRV 262
             L F +AA LPLA  TA+  L    G   G+++LV   +GGVGS  IQLAK   GA+ V
Sbjct: 113 DGLSFEEAAALPLAGLTAWLALFDRAGLKPGETVLVHGAAGGVGSAAIQLAKA-LGATVV 171

Query: 263 AATSSTRNLEFLKSLGADLAIDYTKDNFED------LPEKFDVVYDAIG--QCDRAVKAI 314
           A  SS+  LE LK LGAD  I+Y +++F +        +  DVV D +G      ++ A+
Sbjct: 172 AVVSSSEKLELLKELGADHVINYREEDFVEQVRELTGGKGVDVVLDTVGGDTFAASLAAL 231

Query: 315 KEGGTVVALTGAVTPPGFRFVVTS--------------------NGEVLKKLNPYLESGK 354
             GG +V++      P     +                        E L +L   L SGK
Sbjct: 232 APGGRLVSIGALSGGPPVPLNLLPLLGKRLTLRGVTLGSRDPEALAEALAELFDLLASGK 291

Query: 355 VKPIIDPKGPFPFSQVVEAF-SYIETNKATGKVVIHP 390
           +KP+ID    +P ++   A    +   + TGKVV+  
Sbjct: 292 LKPVIDRV--YPLAEAPAAAAHLLLERRTTGKVVLKV 326

Length = 326

>gnl|CDD|176210 cd08248, RTN4I1, Human Reticulon 4 Interacting Protein 1

 Score =  230 bits (589), Expect = 1e-72
 Identities = 134/359 (37%), Positives = 179/359 (49%), Gaps = 64/359 (17%)

Query: 84  MKAWLYGEYGGVDVLKFDEKVTVPQV-KEDQVLIKVVAAALNPVD-----G--------K 129
           MKAW    YGG+D L   E   +P + K +QVLIKV AA++NP+D     G        K
Sbjct: 1   MKAWQIHSYGGIDSLLLLENARIPVIRKPNQVLIKVHAASVNPIDVLMRSGYGRTLLNKK 60

Query: 130 RRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKEFKEGDEVYGDINEKALEGPKQFGSLA 189
           R+    K +    P   G D +GVVV +G+ VK F+ GDEV+G +       P   G+ A
Sbjct: 61  RKPQSCKYSGIEFPLTLGRDCSGVVVDIGSGVKSFEIGDEVWGAVP------PWSQGTHA 114

Query: 190 EYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLERTG-----FSAGKSILVLNGSGG 244
           EY  V E  ++ KPKNL   +AA LP A  TA+  L   G      +AGK +L+L GSGG
Sbjct: 115 EYVVVPENEVSKKPKNLSHEEAASLPYAGLTAWSALVNVGGLNPKNAAGKRVLILGGSGG 174

Query: 245 VGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFED---LPEKFDVVY 301
           VG+  IQL K  +GA  V  T ST  +  +KSLGAD  IDY  ++FE+      KFDV+ 
Sbjct: 175 VGTFAIQLLKA-WGA-HVTTTCSTDAIPLVKSLGADDVIDYNNEDFEEELTERGKFDVIL 232

Query: 302 DAIGQCDR--AVKAIKEGGTVV------------------ALTGAVT------PPGFRFV 335
           D +G      A+K +K+GGT V                   L  AV           +  
Sbjct: 233 DTVGGDTEKWALKLLKKGGTYVTLVSPLLKNTDKLGLVGGMLKSAVDLLKKNVKSLLKGS 292

Query: 336 VTS------NGEVLKKLNPYLESGKVKPIIDPKGPFPFSQVVEAFSYIETNKATGKVVI 388
                    +G  L +L   +E GK+KP+ID    FPF +V EA+  +E+  A GK VI
Sbjct: 293 HYRWGFFSPSGSALDELAKLVEDGKIKPVIDKV--FPFEEVPEAYEKVESGHARGKTVI 349

Human Reticulon 4 Interacting Protein 1 is a member of the medium chain dehydrogenase/ reductase (MDR) family. Riticulons are endoplasmic reticulum associated proteins involved in membrane trafficking and neuroendocrine secretion. The MDR/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. Length = 350

>gnl|CDD|176180 cd05276, p53_inducible_oxidoreductase, PIG3 p53-inducible quinone oxidoreductase

 Score =  201 bits (514), Expect = 6e-62
 Identities = 112/344 (32%), Positives = 166/344 (48%), Gaps = 60/344 (17%)

Query: 84  MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLP 143
           MKA +  E GG +VL+  E V  P     +VLI+V AA +N  D  +RQG +     P P
Sbjct: 1   MKAIVIKEPGGPEVLELGE-VPKPAPGPGEVLIRVAAAGVNRADLLQRQGLY-----PPP 54

Query: 144 ----TVPGYDVAGVVVKVGTQVKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLL 199
                + G +VAGVVV VG  V  +K GD V        L G    G  AEY  V    L
Sbjct: 55  PGASDILGLEVAGVVVAVGPGVTGWKVGDRVCA-----LLAG----GGYAEYVVVPAGQL 105

Query: 200 APKPKNLDFVQAAGLPLAIETAYEGL-ERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFG 258
            P P+ L  V+AA LP    TA++ L +  G  AG+++L+  G+ GVG+  IQLAK   G
Sbjct: 106 LPVPEGLSLVEAAALPEVFFTAWQNLFQLGGLKAGETVLIHGGASGVGTAAIQLAK-ALG 164

Query: 259 ASRVAATSST-RNLEFLKSLGADLAIDYTKDNFEDLPEKF------DVVYDAIGQ--CDR 309
           A RV AT+ +   LE  ++LGAD+AI+Y  ++F +  ++       DV+ D +G     R
Sbjct: 165 A-RVIATAGSEEKLEACRALGADVAINYRTEDFAEEVKEATGGRGVDVILDMVGGDYLAR 223

Query: 310 AVKAIKEGGTVV---ALTGAVT----------------------PPGFRFVVTSNGEVLK 344
            ++A+   G +V    L GA                            +  + +     +
Sbjct: 224 NLRALAPDGRLVLIGLLGGAKAELDLAPLLRKRLTLTGSTLRSRSLEEKAALAA--AFRE 281

Query: 345 KLNPYLESGKVKPIIDPKGPFPFSQVVEAFSYIETNKATGKVVI 388
            + P   SG+++P+ID    FP  +  EA   +E+N+  GK+V+
Sbjct: 282 HVWPLFASGRIRPVIDKV--FPLEEAAEAHRRMESNEHIGKIVL 323

PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 323

>gnl|CDD|176215 cd08253, zeta_crystallin, Zeta-crystallin with NADP-dependent quinone reductase activity (QOR)

 Score =  195 bits (499), Expect = 1e-59
 Identities = 103/335 (30%), Positives = 148/335 (44%), Gaps = 38/335 (11%)

Query: 84  MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLP 143
           M+A  Y E+G  DVL+  + + VP     +VL++V A+ +NPVD   R G +     PLP
Sbjct: 1   MRAIRYHEFGAPDVLRLGD-LPVPTPGPGEVLVRVHASGVNPVDTYIRAGAY-PGLPPLP 58

Query: 144 TVPGYDVAGVVVKVGTQVKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKP 203
            VPG D AGVV  VG  V   K GD V+  +           G+ AEY  V    L P P
Sbjct: 59  YVPGSDGAGVVEAVGEGVDGLKVGDRVW--LTNLGWGRR--QGTAAEYVVVPADQLVPLP 114

Query: 204 KNLDFVQAAGLPLAIETAYEGL-ERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRV 262
             + F Q A L +   TAY  L  R G  AG+++LV  GSG VG   +QLA+   GA RV
Sbjct: 115 DGVSFEQGAALGIPALTAYRALFHRAGAKAGETVLVHGGSGAVGHAAVQLAR-WAGA-RV 172

Query: 263 AAT-SSTRNLEFLKSLGADLAIDYTKDNFED------LPEKFDVVYD--AIGQCDRAVKA 313
            AT SS    E ++  GAD   +Y  ++  D        +  DV+ +  A     + +  
Sbjct: 173 IATASSAEGAELVRQAGADAVFNYRAEDLADRILAATAGQGVDVIIEVLANVNLAKDLDV 232

Query: 314 IKEGGTVVALTGAVTPPGF------------RFVVTSN------GEVLKKLNPYLESGKV 355
           +  GG +V                       R V+             + +   L  G +
Sbjct: 233 LAPGGRIVVYGSGGLRGTIPINPLMAKEASIRGVLLYTATPEERAAAAEAIAAGLADGAL 292

Query: 356 KPIIDPKGPFPFSQVVEAFSYIETNKATGKVVIHP 390
           +P+I  +  +P  +   A   +E+  A GKVV+ P
Sbjct: 293 RPVIARE--YPLEEAAAAHEAVESGGAIGKVVLDP 325

Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 325

>gnl|CDD|176214 cd08252, AL_MDR, Arginate lyase and other MDR family members

 Score =  195 bits (499), Expect = 1e-59
 Identities = 110/348 (31%), Positives = 164/348 (47%), Gaps = 56/348 (16%)

Query: 84  MKAWLYGEYGGVDVLK--FDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSP 141
           MKA  + +   +       D ++  P      +L++V A ++NPVD K R G       P
Sbjct: 1   MKAIGFTQPLPITDPDSLIDIELPKPVPGGRDLLVRVEAVSVNPVDTKVRAGGAPVPGQP 60

Query: 142 LPTVPGYDVAGVVVKVGTQVKEFKEGDEVY--GDINEKALEGPKQFGSLAEYTAVEERLL 199
              + G+D +GVV  VG++V  FK GDEVY  GDI        +  GS AEY  V+ER++
Sbjct: 61  --KILGWDASGVVEAVGSEVTLFKVGDEVYYAGDIT-------RP-GSNAEYQLVDERIV 110

Query: 200 APKPKNLDFVQAAGLPLAIETAYEGL-ERTGFS-----AGKSILVLNGSGGVGSLVIQLA 253
             KPK+L F +AA LPL   TA+E L +R G S      GK++L++ G+GGVGS+ IQLA
Sbjct: 111 GHKPKSLSFAEAAALPLTSLTAWEALFDRLGISEDAENEGKTLLIIGGAGGVGSIAIQLA 170

Query: 254 KQVFGASRVAATSS---TRNLEFLKSLGADLAIDYTKDNFEDLPEKFDVVYDAI------ 304
           KQ+ G   V AT+S   +    ++K LGAD  I++ +D  E L        D I      
Sbjct: 171 KQLTGL-TVIATASRPESI--AWVKELGADHVINHHQDLAEQLEALGIEPVDYIFCLTDT 227

Query: 305 -GQCDRAVKAIKEGGTVVALTGAVTPP--------GFRFV--------------VTSNGE 341
               D   + I   G +  +     P            F               +    E
Sbjct: 228 DQHWDAMAELIAPQGHICLIVDPQEPLDLGPLKSKSASFHWEFMFTRSMFQTPDMIEQHE 287

Query: 342 VLKKLNPYLESGKVKPIIDPK-GPFPFSQVVEAFSYIETNKATGKVVI 388
           +L ++   L++GK+K  +    GP     + EA + +E+ K  GK+V+
Sbjct: 288 ILNEVADLLDAGKLKTTLTETLGPINAENLREAHALLESGKTIGKIVL 335

This group contains a structure identified as an arginate lyase. Other members are identified quinone reductases, alginate lyases, and other proteins related to the zinc-dependent dehydrogenases/reductases. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 336

>gnl|CDD|176227 cd08266, Zn_ADH_like1, Alcohol dehydrogenases of the MDR family

 Score =  195 bits (498), Expect = 3e-59
 Identities = 121/348 (34%), Positives = 170/348 (48%), Gaps = 47/348 (13%)

Query: 84  MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLP 143
           MKA +   +GG +VL++ + +  P+   D+VL++V AAALN +D   R+G       PLP
Sbjct: 1   MKAVVIRGHGGPEVLEYGD-LPEPEPGPDEVLVRVKAAALNHLDLWVRRGMPGIK-LPLP 58

Query: 144 TVPGYDVAGVVVKVGTQVKEFKEGDEV--YGDIN----EKALEGP----KQF-------- 185
            + G D AGVV  VG  V   K G  V  Y  I+    E  L G      Q+        
Sbjct: 59  HILGSDGAGVVEAVGPGVTNVKPGQRVVIYPGISCGRCEYCLAGRENLCAQYGILGEHVD 118

Query: 186 GSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGL-ERTGFSAGKSILVLNGSGG 244
           G  AEY AV  R L P P NL F +AA  PL   TA+  L  R     G+++LV     G
Sbjct: 119 GGYAEYVAVPARNLLPIPDNLSFEEAAAAPLTFLTAWHMLVTRARLRPGETVLVHGAGSG 178

Query: 245 VGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFEDLPEKF------D 298
           VGS  IQ+AK +FGA+ +A   S   LE  K LGAD  IDY K++F     +       D
Sbjct: 179 VGSAAIQIAK-LFGATVIATAGSEDKLERAKELGADYVIDYRKEDFVREVRELTGKRGVD 237

Query: 299 VVYDAIGQC--DRAVKAIKEGGTVV---ALTGAVTPPGFRFVVT-----------SNGEV 342
           VV + +G    ++++K++  GG +V   A TG   P   R V             +  E+
Sbjct: 238 VVVEHVGAATWEKSLKSLARGGRLVTCGATTGYEAPIDLRHVFWRQLSILGSTMGTKAEL 297

Query: 343 LKKLNPYLESGKVKPIIDPKGPFPFSQVVEAFSYIETNKATGKVVIHP 390
            + L   +  GK+KP+ID    FP  +  EA   +E+ +  GK+V+ P
Sbjct: 298 DEALR-LVFRGKLKPVIDSV--FPLEEAAEAHRRLESREQFGKIVLTP 342

This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 342

>gnl|CDD|176203 cd08241, QOR1, Quinone oxidoreductase (QOR)

 Score =  192 bits (491), Expect = 2e-58
 Identities = 111/338 (32%), Positives = 148/338 (43%), Gaps = 49/338 (14%)

Query: 84  MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGK--FKATDSP 141
           MKA +  E GG + L  +E    P     +V I+V AA +N  D    QGK   K    P
Sbjct: 1   MKAVVCKELGGPEDLVLEEVPPEPG-APGEVRIRVEAAGVNFPDLLMIQGKYQVKP---P 56

Query: 142 LPTVPGYDVAGVVVKVGTQVKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAP 201
           LP VPG +VAGVV  VG  V  FK GD V               G  AE   V    + P
Sbjct: 57  LPFVPGSEVAGVVEAVGEGVTGFKVGDRVVALT---------GQGGFAEEVVVPAAAVFP 107

Query: 202 KPKNLDFVQAAGLPLAIETAYEGL-ERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGAS 260
            P  L F +AA LP+   TAY  L  R     G+++LVL  +GGVG   +QLAK   GA 
Sbjct: 108 LPDGLSFEEAAALPVTYGTAYHALVRRARLQPGETVLVLGAAGGVGLAAVQLAK-ALGAR 166

Query: 261 RVAATSSTRNLEFLKSLGADLAIDYTKDNFED------LPEKFDVVYDAIGQ--CDRAVK 312
            +AA SS   L   ++LGAD  IDY   +  +           DVVYD +G    + +++
Sbjct: 167 VIAAASSEEKLALARALGADHVIDYRDPDLRERVKALTGGRGVDVVYDPVGGDVFEASLR 226

Query: 313 AIKEGGTVV----------------ALTGAVTPPGF------RFVVTSNGEVLKKLNPYL 350
           ++  GG ++                 L   ++  G       R         L +L   L
Sbjct: 227 SLAWGGRLLVIGFASGEIPQIPANLLLLKNISVVGVYWGAYARREPELLRANLAELFDLL 286

Query: 351 ESGKVKPIIDPKGPFPFSQVVEAFSYIETNKATGKVVI 388
             GK++P +     FP  Q  EA   +   KATGKVV+
Sbjct: 287 AEGKIRPHVSA--VFPLEQAAEALRALADRKATGKVVL 322

QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 323

>gnl|CDD|176211 cd08249, enoyl_reductase_like, enoyl_reductase_like

 Score =  190 bits (486), Expect = 1e-57
 Identities = 108/349 (30%), Positives = 147/349 (42%), Gaps = 52/349 (14%)

Query: 84  MKA-WLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPL 142
            KA  L G  GG+ V+     V VP+   D+VL+KV A ALNPVD K +   F       
Sbjct: 1   QKAAVLTGPGGGLLVVV---DVPVPKPGPDEVLVKVKAVALNPVDWKHQDYGFI---PSY 54

Query: 143 PTVPGYDVAGVVVKVGTQVKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPK 202
           P + G D AG VV+VG+ V  FK GD V G ++        + G+  EY   +  L A  
Sbjct: 55  PAILGCDFAGTVVEVGSGVTRFKVGDRVAGFVHG-GNPNDPRNGAFQEYVVADADLTAKI 113

Query: 203 PKNLDFVQAAGLPLAIETAYEGL-----------ERTGFSAGKSILVLNGSGGVGSLVIQ 251
           P N+ F +AA LP+ + TA   L           + +  S GK +L+  GS  VG+L IQ
Sbjct: 114 PDNISFEEAATLPVGLVTAALALFQKLGLPLPPPKPSPASKGKPVLIWGGSSSVGTLAIQ 173

Query: 252 LAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFED-----LPEKFDVVYDAIG- 305
           LAK      +V  T+S +N + +KSLGAD   DY   +  +        K     D I  
Sbjct: 174 LAKLAGY--KVITTASPKNFDLVKSLGADAVFDYHDPDVVEDIRAATGGKLRYALDCIST 231

Query: 306 -----QCDRAVKAIKEGGTVVALTGAVTPPGFR--------FVVTSNGEVL--------- 343
                 C  A+     GG +V+L         R           T  GE+          
Sbjct: 232 PESAQLCAEAL-GRSGGGKLVSLLPVPEETEPRKGVKVKFVLGYTVFGEIPEDREFGEVF 290

Query: 344 -KKLNPYLESGKVKPIIDPKGPFPFSQVVEAFSYIETNKATG-KVVIHP 390
            K L   LE GK+KP            V E    +   K +G K+V+  
Sbjct: 291 WKYLPELLEEGKLKPHPVRVVEGGLEGVQEGLDLLRKGKVSGEKLVVRL 339

Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 339

>gnl|CDD|176232 cd08271, MDR5, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score =  187 bits (476), Expect = 3e-56
 Identities = 116/342 (33%), Positives = 154/342 (45%), Gaps = 58/342 (16%)

Query: 84  MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLP 143
           MKAW+  + G    L   E++ +P     +VL+KV AA LNPVD K       A     P
Sbjct: 1   MKAWVLPKPGAALQLT-LEEIEIPGPGAGEVLVKVHAAGLNPVDWKVIAWGPPA--WSYP 57

Query: 144 TVPGYDVAGVVVKVGTQVKEFKEGDEVY--GDINEKALEGPKQFGSLAEYTAVEERLLAP 201
            VPG D AGVVV VG +V  +K GD V     +           GS AEYT V+ R + P
Sbjct: 58  HVPGVDGAGVVVAVGAKVTGWKVGDRVAYHASLARG--------GSFAEYTVVDARAVLP 109

Query: 202 KPKNLDFVQAAGLPLAIETAYEGLE---RTGFSAGKSILVLNGSGGVGSLVIQLAKQVFG 258
            P +L F +AA LP A  TAY+ L    R    AG++IL+  G+GGVGS  +QLAK+  G
Sbjct: 110 LPDSLSFEEAAALPCAGLTAYQALFKKLRI--EAGRTILITGGAGGVGSFAVQLAKR-AG 166

Query: 259 ASRVAATSSTRNLEFLKSLGADLAIDY-TKDNFEDLPE-----KFDVVYDAIGQCD--RA 310
             RV  T S RN E++KSLGAD  IDY  +D  E + E       D V D +G       
Sbjct: 167 L-RVITTCSKRNFEYVKSLGADHVIDYNDEDVCERIKEITGGRGVDAVLDTVGGETAAAL 225

Query: 311 VKAIKEGGTVVALTGAV---TPPGFRFVVT----------------------SNGEVLKK 345
              +   G +V + G       P F   ++                        GE L +
Sbjct: 226 APTLAFNGHLVCIQGRPDASPDPPFTRALSVHEVALGAAHDHGDPAAWQDLRYAGEELLE 285

Query: 346 LNPYLESGKVKPIIDPKGPFPFSQVVEAFSYIETNKATGKVV 387
           L           +I+     PF Q+ EA   ++     GK+V
Sbjct: 286 L--LAAGKLEPLVIE---VLPFEQLPEALRALKDRHTRGKIV 322

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 325

>gnl|CDD|176229 cd08268, MDR2, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score =  178 bits (453), Expect = 8e-53
 Identities = 111/340 (32%), Positives = 161/340 (47%), Gaps = 45/340 (13%)

Query: 84  MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLP 143
           M+A  + ++GG +VL+ +E + VP     +VLI+V A  LN  D   R+G +     PLP
Sbjct: 1   MRAVRFHQFGGPEVLRIEE-LPVPAPGAGEVLIRVEAIGLNRADAMFRRGAYIE-PPPLP 58

Query: 144 TVPGYDVAGVVVKVGTQVKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKP 203
              GY+ AGVV  VG  V  F  GD V    +        Q+G+ AEY  V    +   P
Sbjct: 59  ARLGYEAAGVVEAVGAGVTGFAVGDRV----SVIPAADLGQYGTYAEYALVPAAAVVKLP 114

Query: 204 KNLDFVQAAGLPLAIETAYEGLERTGF-SAGKSILVLNGSGGVGSLVIQLAKQVFGASRV 262
             L FV+AA L +   TAY  L        G S+L+   S  VG   IQ+A    GA+ +
Sbjct: 115 DGLSFVEAAALWMQYLTAYGALVELAGLRPGDSVLITAASSSVGLAAIQIANAA-GATVI 173

Query: 263 AATSSTRNLEFLKSLGADLAIDYTKDNFEDLPEK---------FDVVYDAIG--QCDRAV 311
           A T ++   + L +LGA   I   +   EDL  +          DVV+D +G  Q  +  
Sbjct: 174 ATTRTSEKRDALLALGAAHVIVTDE---EDLVAEVLRITGGKGVDVVFDPVGGPQFAKLA 230

Query: 312 KAIKEGGTVV---ALTGAVTPPG----------FR----FVVTSNGEVLKK----LNPYL 350
            A+  GGT+V   AL+G  TP            FR      +T + E  ++    +   L
Sbjct: 231 DALAPGGTLVVYGALSGEPTPFPLKAALKKSLTFRGYSLDEITLDPEARRRAIAFILDGL 290

Query: 351 ESGKVKPIIDPKGPFPFSQVVEAFSYIETNKATGKVVIHP 390
            SG +KP++D    FPF  +VEA  Y+E+ +  GK+V+ P
Sbjct: 291 ASGALKPVVDRV--FPFDDIVEAHRYLESGQQIGKIVVTP 328

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 328

>gnl|CDD|234027 TIGR02824, quinone_pig3, putative NAD(P)H quinone oxidoreductase, PIG3 family

 Score =  174 bits (443), Expect = 2e-51
 Identities = 112/342 (32%), Positives = 163/342 (47%), Gaps = 56/342 (16%)

Query: 84  MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLP 143
           MKA    E GG +VL   E V +P  K  +VLI+V AA +N  D  +R GK+     P P
Sbjct: 1   MKAIEITEPGGPEVLVLVE-VPLPVPKAGEVLIRVAAAGVNRPDLLQRAGKY-----PPP 54

Query: 144 ----TVPGYDVAGVVVKVGTQVKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLL 199
                + G +VAG VV VG  V  +K GD V   +           G  AEY AV    +
Sbjct: 55  PGASDILGLEVAGEVVAVGEGVSRWKVGDRVCALVAG---------GGYAEYVAVPAGQV 105

Query: 200 APKPKNLDFVQAAGLPLAIETAYEGL-ERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFG 258
            P P+ L  V+AA LP    T +  L +R G  AG+++L+  G+ G+G+  IQLAK  FG
Sbjct: 106 LPVPEGLSLVEAAALPETFFTVWSNLFQRGGLKAGETVLIHGGASGIGTTAIQLAKA-FG 164

Query: 259 ASRVAAT-SSTRNLEFLKSLGADLAIDYTKDNF------EDLPEKFDVVYDAIGQ--CDR 309
           A RV  T  S       ++LGAD+AI+Y +++F      E   +  DV+ D +G    +R
Sbjct: 165 A-RVFTTAGSDEKCAACEALGADIAINYREEDFVEVVKAETGGKGVDVILDIVGGSYLNR 223

Query: 310 AVKAIKEGGTVV--ALTGAVT-----PP--GFRFVVTSN--------------GEVLKKL 346
            +KA+   G +V     G         P    R  +T +               E+ + +
Sbjct: 224 NIKALALDGRIVQIGFQGGRKAELDLGPLLAKRLTITGSTLRARPVAEKAAIAAELREHV 283

Query: 347 NPYLESGKVKPIIDPKGPFPFSQVVEAFSYIETNKATGKVVI 388
            P L SG+V+P+ID    FP     +A + +E+    GK+V+
Sbjct: 284 WPLLASGRVRPVIDKV--FPLEDAAQAHALMESGDHIGKIVL 323

Members of this family are putative quinone oxidoreductases that belong to the broader superfamily (modeled by Pfam pfam00107) of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxiooreductases. The alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, and members are likely to be quinone oxidoreductases instead. A member of this family in Homo sapiens, PIG3, is induced by p53 but is otherwise uncharacterized [Unknown function, Enzymes of unknown specificity]. Length = 325

>gnl|CDD|176178 cd05188, MDR, Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score =  169 bits (431), Expect = 3e-50
 Identities = 85/257 (33%), Positives = 117/257 (45%), Gaps = 29/257 (11%)

Query: 113 QVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKEFKEGDEVYG 172
           +VL++V AA L   D   R+G        LP + G++ AGVVV+VG  V   K GD V  
Sbjct: 1   EVLVRVEAAGLCGTDLHIRRGG-YPPPPKLPLILGHEGAGVVVEVGPGVTGVKVGDRVVV 59

Query: 173 DIN--------------EKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAI 218
             N                 + G    G  AEY  V    L P P  L   +AA LP  +
Sbjct: 60  LPNLGCGTCELCRELCPGGGILGEGLDGGFAEYVVVPADNLVPLPDGLSLEEAALLPEPL 119

Query: 219 ETAYEGLERTG-FSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSL 277
            TAY  L R G    G ++LVL G+GGVG L  QLAK   GA  +    S   LE  K L
Sbjct: 120 ATAYHALRRAGVLKPGDTVLVL-GAGGVGLLAAQLAKA-AGARVIVTDRSDEKLELAKEL 177

Query: 278 GADLAIDYTKDNFEDL-----PEKFDVVYDAIGQCD---RAVKAIKEGGTVV---ALTGA 326
           GAD  IDY +++ E+          DVV DA+G  +   +A++ ++ GG +V     +G 
Sbjct: 178 GADHVIDYKEEDLEEELRLTGGGGADVVIDAVGGPETLAQALRLLRPGGRIVVVGGTSGG 237

Query: 327 VTPPGFRFVVTSNGEVL 343
                 R ++     ++
Sbjct: 238 PPLDDLRRLLFKELTII 254

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Other MDR members have only a catalytic zinc, and some contain no coordinated zinc. Length = 271

>gnl|CDD|176237 cd08276, MDR7, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score =  168 bits (427), Expect = 7e-49
 Identities = 112/343 (32%), Positives = 156/343 (45%), Gaps = 47/343 (13%)

Query: 84  MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLP 143
           MKAW     GG+D LK  E   VP+    +VL++V A +LN  D     G++       P
Sbjct: 1   MKAWRLSGGGGLDNLKLVE-EPVPEPGPGEVLVRVHAVSLNYRDLLILNGRY-PPPVKDP 58

Query: 144 TVPGYDVAGVVVKVGTQVKEFKEGDEV---------YGDINEKALE---GPKQFGSLAEY 191
            +P  D AG VV VG  V  FK GD V          G    +      G    G LAEY
Sbjct: 59  LIPLSDGAGEVVAVGEGVTRFKVGDRVVPTFFPNWLDGPPTAEDEASALGGPIDGVLAEY 118

Query: 192 TAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGL-ERTGFSAGKSILVLNGSGGVGSLVI 250
             + E  L   P +L F +AA LP A  TA+  L        G ++LV  G+GGV    +
Sbjct: 119 VVLPEEGLVRAPDHLSFEEAATLPCAGLTAWNALFGLGPLKPGDTVLVQ-GTGGVSLFAL 177

Query: 251 QLAKQVFGASRVAATSSTR-NLEFLKSLGADLAIDYTKDNFEDLPEK---------FDVV 300
           Q AK   GA RV ATSS+   LE  K+LGAD  I+Y      D  E+          D V
Sbjct: 178 QFAK-AAGA-RVIATSSSDEKLERAKALGADHVINYRTT--PDWGEEVLKLTGGRGVDHV 233

Query: 301 YDAIGQC--DRAVKAIKEGGTVV---ALTGAVTPPGFRFVVTSNGEV----------LKK 345
            +  G     +++KA+  GG +     L+G   P     ++T    +           + 
Sbjct: 234 VEVGGPGTLAQSIKAVAPGGVISLIGFLSGFEAPVLLLPLLTKGATLRGIAVGSRAQFEA 293

Query: 346 LNPYLESGKVKPIIDPKGPFPFSQVVEAFSYIETNKATGKVVI 388
           +N  +E+ +++P+ID    FPF +  EA+ Y+E+    GKVVI
Sbjct: 294 MNRAIEAHRIRPVID--RVFPFEEAKEAYRYLESGSHFGKVVI 334

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 336

>gnl|CDD|176209 cd08247, AST1_like, AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast

 Score =  163 bits (414), Expect = 7e-47
 Identities = 107/340 (31%), Positives = 155/340 (45%), Gaps = 60/340 (17%)

Query: 102 EKVTVP-QVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQ 160
            K+ +P   K++++++KV AAALNPVD K                 G D +GV+VKVG+ 
Sbjct: 18  IKLPLPNCYKDNEIVVKVHAAALNPVDLKLYNSYTFHF-KVKEKGLGRDYSGVIVKVGSN 76

Query: 161 VK-EFKEGDEVYGDINEKALEGPKQFGSLAEY----TAVEERLLAPKPKNLDFVQAAGLP 215
           V  E+K GDEV G I      G    G+L++Y       +++ +  KP+N+   +AA  P
Sbjct: 77  VASEWKVGDEVCG-IYPHPYGG---QGTLSQYLLVDPKKDKKSITRKPENISLEEAAAWP 132

Query: 216 LAIETAYEGLERTGFSAGKS--ILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEF 273
           L + TAY+ LE  G   G    +LVL GS  VG   IQLAK  +    V  T S+R+ E 
Sbjct: 133 LVLGTAYQILEDLGQKLGPDSKVLVLGGSTSVGRFAIQLAKNHYNIGTVVGTCSSRSAEL 192

Query: 274 LKSLGADLAIDYTK-DNFEDL---------PEKFDVVYDAIG------QCDRAVKAIKEG 317
            K LGAD  IDY      + L           KFD++ D +G        +  +K   + 
Sbjct: 193 NKKLGADHFIDYDAHSGVKLLKPVLENVKGQGKFDLILDCVGGYDLFPHINSILKPKSKN 252

Query: 318 GTVVALTG------------AVTPPGF-----------------RFVVTSNGEVLKKLNP 348
           G  V + G            +   P                    F++  N + ++K   
Sbjct: 253 GHYVTIVGDYKANYKKDTFNSWDNPSANARKLFGSLGLWSYNYQFFLLDPNADWIEKCAE 312

Query: 349 YLESGKVKPIIDPKGPFPFSQVVEAFSYIETNKATGKVVI 388
            +  GKVKP ID    +PF    EAF  +++N+A GKVVI
Sbjct: 313 LIADGKVKPPIDSV--YPFEDYKEAFERLKSNRAKGKVVI 350

This group contains members identified in targeting of yeast membrane proteins ATPase. AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast, identified as a multicopy suppressor of pma1 mutants which cause temperature sensitive growth arrest due to the inability of ATPase to target to the cell surface. This family is homologous to the medium chain family of dehydrogenases and reductases. Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. Length = 352

>gnl|CDD|223992 COG1064, AdhP, Zn-dependent alcohol dehydrogenases [General function prediction only]

 Score =  160 bits (408), Expect = 4e-46
 Identities = 104/348 (29%), Positives = 154/348 (44%), Gaps = 53/348 (15%)

Query: 81  PSEMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDS 140
              MKA +  ++G    L+ +E V VP+    +VLIKV A  +   D    +G +     
Sbjct: 1   MMTMKAAVLKKFGQP--LEIEE-VPVPEPGPGEVLIKVEACGVCHTDLHVAKGDWP--VP 55

Query: 141 PLPTVPGYDVAGVVVKVGTQVKEFKEGDEV-------------Y---GDIN---EKALEG 181
            LP +PG+++ G VV+VG  V   K GD V             Y   G+ N    + + G
Sbjct: 56  KLPLIPGHEIVGTVVEVGEGVTGLKVGDRVGVGWLVISCGECEYCRSGNENLCPNQKITG 115

Query: 182 PKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLERTGFSAGKSILVLNG 241
               G  AEY  V  R +   P+ LD  +AA L  A  T Y  L++     GK + V+ G
Sbjct: 116 YTTDGGYAEYVVVPARYVVKIPEGLDLAEAAPLLCAGITTYRALKKANVKPGKWVAVV-G 174

Query: 242 SGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNF-EDLPEKFDVV 300
           +GG+G + +Q AK   GA  +A T S   LE  K LGAD  I+ +  +  E + E  D +
Sbjct: 175 AGGLGHMAVQYAK-AMGAEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAI 233

Query: 301 YDAIGQ--CDRAVKAIKEGGTVV-----ALTGAVTPPGFRFV------VTSNG------- 340
            D +G    + ++KA++ GGT+V             P F  +      V S         
Sbjct: 234 IDTVGPATLEPSLKALRRGGTLVLVGLPGGGPIPLLPAFLLILKEISIVGSLVGTRADLE 293

Query: 341 EVLKKLNPYLESGKVKPIIDPKGPFPFSQVVEAFSYIETNKATGKVVI 388
           E L     +   GK+KP I      P  ++ EA+  +E  K  G+ VI
Sbjct: 294 EALD----FAAEGKIKPEILET--IPLDEINEAYERMEKGKVRGRAVI 335

Length = 339

>gnl|CDD|176189 cd05286, QOR2, Quinone oxidoreductase (QOR)

 Score =  156 bits (398), Expect = 9e-45
 Identities = 101/334 (30%), Positives = 154/334 (46%), Gaps = 54/334 (16%)

Query: 91  EYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDV 150
           + GG +VL++++ V VP+    +VL++  A  +N +D   R G +     PLP V G + 
Sbjct: 7   KTGGPEVLEYED-VPVPEPGPGEVLVRNTAIGVNFIDTYFRSGLYPL---PLPFVLGVEG 62

Query: 151 AGVVVKVGTQVKEFKEGDEV-YGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFV 209
           AGVV  VG  V  FK GD V Y              G+ AEY  V    L   P  +   
Sbjct: 63  AGVVEAVGPGVTGFKVGDRVAYAGP----------PGAYAEYRVVPASRLVKLPDGISDE 112

Query: 210 QAAGLPLAIETAYEGLERTG-FSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSST 268
            AA L L   TA+  L  T     G ++LV   +GGVG L+ Q AK   GA+ +   SS 
Sbjct: 113 TAAALLLQGLTAHYLLRETYPVKPGDTVLVHAAAGGVGLLLTQWAKA-LGATVIGTVSSE 171

Query: 269 RNLEFLKSLGADLAIDYTKDNFEDLPEK---------FDVVYDAIGQ--CDRAVKAIKEG 317
              E  ++ GAD  I+Y     ED  E+          DVVYD +G+   + ++ +++  
Sbjct: 172 EKAELARAAGADHVINYRD---EDFVERVREITGGRGVDVVYDGVGKDTFEGSLDSLRPR 228

Query: 318 GTVVAL---TGAVTP-------PGFRFV--------VTSNGEVLK---KLNPYLESGKVK 356
           GT+V+    +G V P        G  F+        + +  E+L    +L   + SGK+K
Sbjct: 229 GTLVSFGNASGPVPPFDLLRLSKGSLFLTRPSLFHYIATREELLARAAELFDAVASGKLK 288

Query: 357 PIIDPKGPFPFSQVVEAFSYIETNKATGKVVIHP 390
             I     +P +   +A   +E+ K TGK+++ P
Sbjct: 289 VEIG--KRYPLADAAQAHRDLESRKTTGKLLLIP 320

Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone and 1,4-naphthoquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 320

>gnl|CDD|176236 cd08275, MDR3, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score =  155 bits (393), Expect = 6e-44
 Identities = 108/351 (30%), Positives = 154/351 (43%), Gaps = 59/351 (16%)

Query: 85  KAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPT 144
           +A +   +GG+D LK +++  +P+    +V ++V A  LN  D   RQG + +     P 
Sbjct: 1   RAVVLTGFGGLDKLKVEKE-ALPEPSSGEVRVRVEACGLNFADLMARQGLYDSA-PKPPF 58

Query: 145 VPGYDVAGVVVKVGTQVKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPK 204
           VPG++ AG V  VG  VK+FK GD V G            FG  AE   V    + P P 
Sbjct: 59  VPGFECAGTVEAVGEGVKDFKVGDRVMGLTR---------FGGYAEVVNVPADQVFPLPD 109

Query: 205 NLDFVQAAGLPLAIETAYEGLERTG-FSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVA 263
            + F +AA  P+   TAY  L   G    G+S+LV + +GGVG    QL K V   + V 
Sbjct: 110 GMSFEEAAAFPVNYLTAYYALFELGNLRPGQSVLVHSAAGGVGLAAGQLCKTVPNVT-VV 168

Query: 264 ATSSTRNLEFLKSLGADLAIDYTKDNFED-----LPEKFDVVYDAIGQCD--RAVKAIKE 316
            T+S    E LK  G    IDY   ++ +      PE  D+V DA+G  D  ++   +K 
Sbjct: 169 GTASASKHEALKENGVTHVIDYRTQDYVEEVKKISPEGVDIVLDALGGEDTRKSYDLLKP 228

Query: 317 GGTVVA-----LTGAVTPPGFRFV--------------VTSN------------------ 339
            G +V      L        F+                ++ N                  
Sbjct: 229 MGRLVVYGAANLVTGEKRSWFKLAKKWWNRPKVDPMKLISENKSVLGFNLGWLFEERELL 288

Query: 340 GEVLKKLNPYLESGKVKPIIDPKGPFPFSQVVEAFSYIETNKATGKVVIHP 390
            EV+ KL    E GK+KP ID    FPF +V EA   +++ K  GKVV+ P
Sbjct: 289 TEVMDKLLKLYEEGKIKPKIDSV--FPFEEVGEAMRRLQSRKNIGKVVLTP 337

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 337

>gnl|CDD|173547 PTZ00354, PTZ00354, alcohol dehydrogenase; Provisional

 Score =  154 bits (392), Expect = 8e-44
 Identities = 109/349 (31%), Positives = 162/349 (46%), Gaps = 68/349 (19%)

Query: 84  MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLP 143
           M+A     +GGVDVLK  E    P  K + VLIKV AA +N  D  +RQGK+     P P
Sbjct: 2   MRAVTLKGFGGVDVLKIGE-SPKPAPKRNDVLIKVSAAGVNRADTLQRQGKY----PPPP 56

Query: 144 TVP---GYDVAGVVVKVGTQVKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLA 200
                 G +VAG V  VG+ VK FKEGD V        L G    G  AEY    +  + 
Sbjct: 57  GSSEILGLEVAGYVEDVGSDVKRFKEGDRVMA-----LLPG----GGYAEYAVAHKGHVM 107

Query: 201 PKPKNLDFVQAAGLPLAIETAYEGLERTG-FSAGKSILVLNGSGGVGSLVIQLAKQVFGA 259
             P+   F +AA +P A  TA++ L++ G    G+S+L+  G+ GVG+   QLA+  +GA
Sbjct: 108 HIPQGYTFEEAAAIPEAFLTAWQLLKKHGDVKKGQSVLIHAGASGVGTAAAQLAE-KYGA 166

Query: 260 SRVAATSSTRNLEFLKSLGADLAIDYTKDNFEDLPEKFDVVYDAIGQCDRAVKAIKE--G 317
           + +  TSS   ++F K L A + I Y  D     P+   +        ++ V  + +  G
Sbjct: 167 ATIITTSSEEKVDFCKKLAAIILIRY-PDEEGFAPKVKKLT------GEKGVNLVLDCVG 219

Query: 318 GTVVALTGAVTPPGFRFVVTS--NGEVLKKLN---------------------------- 347
           G+ ++ T  V     +++V     G  ++K N                            
Sbjct: 220 GSYLSETAEVLAVDGKWIVYGFMGGAKVEKFNLLPLLRKRASIIFSTLRSRSDEYKADLV 279

Query: 348 --------PYLESGKVKPIIDPKGPFPFSQVVEAFSYIETNKATGKVVI 388
                   PY+E G++KPI+D    +P  +V EA +++E NK  GKVV+
Sbjct: 280 ASFEREVLPYMEEGEIKPIVDRT--YPLEEVAEAHTFLEQNKNIGKVVL 326

Length = 334

>gnl|CDD|176235 cd08274, MDR9, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score =  155 bits (393), Expect = 9e-44
 Identities = 102/354 (28%), Positives = 152/354 (42%), Gaps = 51/354 (14%)

Query: 84  MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSP-- 141
           M+A L   +GG+D L + + V VP     +VLI+V A  +N  D   R+G +        
Sbjct: 1   MRAVLLTGHGGLDKLVYRDDVPVPTPAPGEVLIRVGACGVNNTDINTREGWYSTEVDGAT 60

Query: 142 ----------------LPTVPGYDVAGVVVKVGTQVKEFKEGDEVYGDINEKALEGPKQF 185
                            P + G D+ G VV VG  V   + G+ V  D + +        
Sbjct: 61  DSTGAGEAGWWGGTLSFPRIQGADIVGRVVAVGEGVDTARIGERVLVDPSIRDPPEDDPA 120

Query: 186 ----------GSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLERTGFSAGKS 235
                     G  AEYT V      P    L  V+ A  P +  TA   LER G  AG++
Sbjct: 121 DIDYIGSERDGGFAEYTVVPAENAYPVNSPLSDVELATFPCSYSTAENMLERAGVGAGET 180

Query: 236 ILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFEDL-- 293
           +LV   SGGVGS ++QLAK+      V A +     E +++LGAD  I        D   
Sbjct: 181 VLVTGASGGVGSALVQLAKRRGA--IVIAVAGAAKEEAVRALGADTVILRDAPLLADAKA 238

Query: 294 --PEKFDVVYDAIG--QCDRAVKAIKEGGTVV---ALTGAVTPPGFRFV----VTSNG-- 340
              E  DVV D +G       ++ ++ GG  V   A+ G V     R +    +T  G  
Sbjct: 239 LGGEPVDVVADVVGGPLFPDLLRLLRPGGRYVTAGAIAGPVVELDLRTLYLKDLTLFGST 298

Query: 341 ----EVLKKLNPYLESGKVKPIIDPKGPFPFSQVVEAFSYIETNKATGKVVIHP 390
               EV ++L  Y+E G+++P++     FP S++ EA +     +  GK+V+ P
Sbjct: 299 LGTREVFRRLVRYIEEGEIRPVVA--KTFPLSEIREAQAEFLEKRHVGKLVLVP 350

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 350

>gnl|CDD|176196 cd08234, threonine_DH_like, L-threonine dehydrogenase

 Score =  147 bits (374), Expect = 4e-41
 Identities = 119/352 (33%), Positives = 167/352 (47%), Gaps = 64/352 (18%)

Query: 84  MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLP 143
           MKA +Y   G ++V    E+V VP+   D+VLIKV A  +   D    +G+F A     P
Sbjct: 1   MKALVYEGPGELEV----EEVPVPEPGPDEVLIKVAACGICGTDLHIYEGEFGAA---PP 53

Query: 144 TVPGYDVAGVVVKVGTQVKEFKEGDEVYGDINEKALE------GPKQF------------ 185
            VPG++ AGVVV VG++V  FK GD V  D N    E      G                
Sbjct: 54  LVPGHEFAGVVVAVGSKVTGFKVGDRVAVDPNIYCGECFYCRRGRPNLCENLTAVGVTRN 113

Query: 186 GSLAEYTAVEERLLAPKPKNLDFVQAAGL-PLAIETAYEGLERTGFSAGKSILVLNGSGG 244
           G  AEY  V  + +   P NL F +AA   PL+   A  GL+  G   G S+LV  G+G 
Sbjct: 114 GGFAEYVVVPAKQVYKIPDNLSFEEAALAEPLS--CAVHGLDLLGIKPGDSVLVF-GAGP 170

Query: 245 VGSLVIQLAKQVFGASRV--AATSSTRNLEFLKSLGADLAIDYTKDN----FEDLPEKFD 298
           +G L+ QL K   GASRV  A  +  + LE  K LGA   +D ++++     ED P  FD
Sbjct: 171 IGLLLAQLLKLN-GASRVTVAEPNEEK-LELAKKLGATETVDPSREDPEAQKEDNPYGFD 228

Query: 299 VVYDAIGQ---CDRAVKAIKEGGTVVALTGAVTPPGFRFVVTSNGEVLKK--------LN 347
           VV +A G     ++A++  + GGTV+     V  P  R  ++   E+ +K        +N
Sbjct: 229 VVIEATGVPKTLEQAIEYARRGGTVLVF--GVYAPDARVSISPF-EIFQKELTIIGSFIN 285

Query: 348 PY--------LESGK--VKPIIDPKGPFPFSQVVEAFSYIETNKATGKVVIH 389
           PY        LESGK  VK ++  +   P  +V EA   +  +    KVV+ 
Sbjct: 286 PYTFPRAIALLESGKIDVKGLVSHR--LPLEEVPEALEGMR-SGGALKVVVV 334

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Length = 334

>gnl|CDD|176220 cd08259, Zn_ADH5, Alcohol dehydrogenases of the MDR family

 Score =  144 bits (365), Expect = 6e-40
 Identities = 99/324 (30%), Positives = 146/324 (45%), Gaps = 45/324 (13%)

Query: 102 EKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQV 161
           E+V  P+    +VLIKV AA +   D    +G F       P + G+++ G V +VG  V
Sbjct: 16  EEVPDPEPGPGEVLIKVKAAGVCYRDLLFWKGFFPR--GKYPLILGHEIVGTVEEVGEGV 73

Query: 162 KEFKEGDEVYGDINE------------------KALEGPKQFGSLAEYTAVEERLLAPKP 203
           + FK GD V                        +A  G +  G  AEY  V ER L   P
Sbjct: 74  ERFKPGDRVILYYYIPCGKCEYCLSGEENLCRNRAEYGEEVDGGFAEYVKVPERSLVKLP 133

Query: 204 KNLDFVQAAGLPLAIETAYEGLERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVA 263
            N+    AA     + TA   L+R G   G ++LV    GGVG   IQLAK   GA  +A
Sbjct: 134 DNVSDESAALAACVVGTAVHALKRAGVKKGDTVLVTGAGGGVGIHAIQLAK-ALGARVIA 192

Query: 264 ATSSTRNLEFLKSLGADLAIDYTKDNFEDLPEK--FDVVYDAIG--QCDRAVKAIKEGGT 319
            T S   L+ LK LGAD  ID      ED+ +    DVV + +G    + +++++ +GG 
Sbjct: 193 VTRSPEKLKILKELGADYVID-GSKFSEDVKKLGGADVVIELVGSPTIEESLRSLNKGGR 251

Query: 320 VVALTGAVTP------PGF----RFVVTSNG-----EVLKKLNPYLESGKVKPIIDPKGP 364
           +V L G VTP      PG        +  +      +V + L   ++ GK+KP+ID    
Sbjct: 252 LV-LIGNVTPDPAPLRPGLLILKEIRIIGSISATKADVEEALK-LVKEGKIKPVIDRV-- 307

Query: 365 FPFSQVVEAFSYIETNKATGKVVI 388
                + EA   +++ K  G++V+
Sbjct: 308 VSLEDINEALEDLKSGKVVGRIVL 331

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine (His-51), the ribose of NAD, a serine (Ser-48), then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 332

>gnl|CDD|176234 cd08273, MDR8, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score =  143 bits (364), Expect = 9e-40
 Identities = 101/342 (29%), Positives = 156/342 (45%), Gaps = 65/342 (19%)

Query: 92  YGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVA 151
            GG +VLK  E   +P+    +V++KV A+ ++  D + R+G +     PLP  PGYD+ 
Sbjct: 9   RGGPEVLKVVE-ADLPEPAAGEVVVKVEASGVSFADVQMRRGLYPDQP-PLPFTPGYDLV 66

Query: 152 GVVVKVGTQVKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQA 211
           G V  +G+ V  F+ GD V       AL    + G  AEY  ++ + L P P+ +D  +A
Sbjct: 67  GRVDALGSGVTGFEVGDRV------AAL---TRVGGNAEYINLDAKYLVPVPEGVDAAEA 117

Query: 212 AGLPLAIETAYEGLERTGFS-AGKSILVLNGSGGVGSLVIQLAK----QVFGASRVAATS 266
             L L   TAY+ L R      G+ +L+   SGGVG  +++LA     +V+G      T+
Sbjct: 118 VCLVLNYVTAYQMLHRAAKVLTGQRVLIHGASGGVGQALLELALLAGAEVYG------TA 171

Query: 267 STRNLEFLKSLGADLAIDYTKDNFED---LPEKFDVVYDAIG--QCDRAVKAIKEGGTVV 321
           S RN   L+ LGA   IDY   ++      P   DVV+D +G    + +  A+  GGT+V
Sbjct: 172 SERNHAALRELGA-TPIDYRTKDWLPAMLTPGGVDVVFDGVGGESYEESYAALAPGGTLV 230

Query: 322 ALTGAVTPPGFRFVVTSNGEVLKKLN-----------------------PY--------- 349
              G  +    R  + + G +L +L                        P          
Sbjct: 231 CYGGNSSLLQGRRSLAALGSLLARLAKLKLLPTGRRATFYYVWRDRAEDPKLFRQDLTEL 290

Query: 350 ---LESGKVKPIIDPKGPFPFSQVVEAFSYIETNKATGKVVI 388
              L  GK++P I  +   P S+V EA   +E+ K  GK+V+
Sbjct: 291 LDLLAKGKIRPKIAKR--LPLSEVAEAHRLLESGKVVGKIVL 330

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 331

>gnl|CDD|234024 TIGR02817, adh_fam_1, zinc-binding alcohol dehydrogenase family protein

 Score =  142 bits (360), Expect = 3e-39
 Identities = 74/197 (37%), Positives = 111/197 (56%), Gaps = 18/197 (9%)

Query: 100 FDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGT 159
            D  +  P+     +L++V A ++NPVD K R         P   + G+D AGVVV VG 
Sbjct: 18  VDIDLPKPKPGGRDLLVEVKAISVNPVDTKVRARMAPEAGQP--KILGWDAAGVVVAVGD 75

Query: 160 QVKEFKEGDEVY--GDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLA 217
           +V  FK GDEV+  GDI+          GS AE+  V+ER++  KPK+L F +AA LPL 
Sbjct: 76  EVTLFKPGDEVWYAGDIDRP--------GSNAEFHLVDERIVGHKPKSLSFAEAAALPLT 127

Query: 218 IETAYE------GLERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNL 271
             TA+E      G+        +++L++ G+GGVGS++IQLA+Q+ G + +A  S   + 
Sbjct: 128 SITAWELLFDRLGINDPVAGDKRALLIIGGAGGVGSILIQLARQLTGLTVIATASRPESQ 187

Query: 272 EFLKSLGADLAIDYTKD 288
           E++  LGA   ID++K 
Sbjct: 188 EWVLELGAHHVIDHSKP 204

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model [Energy metabolism, Fermentation]. Length = 336

>gnl|CDD|176213 cd08251, polyketide_synthase, polyketide synthase

 Score =  132 bits (335), Expect = 7e-36
 Identities = 90/317 (28%), Positives = 137/317 (43%), Gaps = 47/317 (14%)

Query: 105 TVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKEF 164
            V      +V I+V A +LN  D    +G +  T  P P  PG++ +GVV  VG  V   
Sbjct: 1   EVAPPGPGEVRIQVRAFSLNFGDLLCVRGLY-PTMPPYPFTPGFEASGVVRAVGPHVTRL 59

Query: 165 KEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEG 224
             GDEV     E         G  A    V E  +  KP +L F +A  LP+   T  + 
Sbjct: 60  AVGDEVIAGTGE-------SMGGHATLVTVPEDQVVRKPASLSFEEACALPVVFLTVIDA 112

Query: 225 LERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAID 284
             R G + G+ IL+   +GG G + +QLA ++ GA   A  SS   LE+LK LG    I+
Sbjct: 113 FARAGLAKGEHILIQTATGGTGLMAVQLA-RLKGAEIYATASSDDKLEYLKQLGVPHVIN 171

Query: 285 YTKDNFEDLPEKF------DVVY-----DAIGQCDRAVKAIKEGGTVV--ALTGAVTPPG 331
           Y +++FE+   +       DVV      +AI +    +  +  GG  V  A+T   + P 
Sbjct: 172 YVEEDFEEEIMRLTGGRGVDVVINTLSGEAIQK---GLNCLAPGGRYVEIAMTALKSAPS 228

Query: 332 FRFVVTSN--------------------GEVLKKLNPYLESGKVKPIIDPKGPFPFSQVV 371
               V SN                     +   ++   +E G+++P +     FPF  + 
Sbjct: 229 VDLSVLSNNQSFHSVDLRKLLLLDPEFIADYQAEMVSLVEEGELRPTVSRI--FPFDDIG 286

Query: 372 EAFSYIETNKATGKVVI 388
           EA+ Y+   +  GKVV+
Sbjct: 287 EAYRYLSDRENIGKVVV 303

Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 303

>gnl|CDD|176225 cd08264, Zn_ADH_like2, Alcohol dehydrogenases of the MDR family

 Score =  131 bits (332), Expect = 3e-35
 Identities = 97/336 (28%), Positives = 156/336 (46%), Gaps = 45/336 (13%)

Query: 84  MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLP 143
           MKA ++ E  G++ LK ++ V  P+    +VLI+V  A +NPVD        K    P+P
Sbjct: 1   MKALVF-EKSGIENLKVED-VKDPKPGPGEVLIRVKMAGVNPVD-YNVINAVKV--KPMP 55

Query: 144 TVPGYDVAGVVVKVGTQVKEFKEGDEV--YGDI----NEKALEGPKQF------------ 185
            +PG + AGVV +VG  VK  K+GD V  Y  +     +  L G +              
Sbjct: 56  HIPGAEFAGVVEEVGDHVKGVKKGDRVVVYNRVFDGTCDMCLSGNEMLCRNGGIIGVVSN 115

Query: 186 GSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLERTGFSAGKSILVLNGSGGV 245
           G  AEY  V E+ L   P ++    AA LP+A  TAY  L+  G   G++++V   SG  
Sbjct: 116 GGYAEYIVVPEKNLFKIPDSISDELAASLPVAALTAYHALKTAGLGPGETVVVFGASGNT 175

Query: 246 GSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTK--DNFEDLPEKFDVVYDA 303
           G   +QLAK + GA  V A S     ++LK  GAD  +DY +  +  +++ +  DVV ++
Sbjct: 176 GIFAVQLAK-MMGA-EVIAVSRK---DWLKEFGADEVVDYDEVEEKVKEITKMADVVINS 230

Query: 304 IGQC--DRAVKAIKEGGTVV---ALTGAVTP-------PGFRFVVTSNGEVLKKLNPYLE 351
           +G    D ++  +  GG +V    LTG                ++ S G   K+L   ++
Sbjct: 231 LGSSFWDLSLSVLGRGGRLVTFGTLTGGEVKLDLSDLYSKQISIIGSTGGTRKELLELVK 290

Query: 352 -SGKVKPIIDPKGPFPFSQVVEAFSYIETNKATGKV 386
            +  +K  +     F   +  EA   + + +  G++
Sbjct: 291 IAKDLKVKVWKT--FKLEEAKEALKELFSKERDGRI 324

This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 325

>gnl|CDD|176179 cd05195, enoyl_red, enoyl reductase of polyketide synthase

 Score =  126 bits (320), Expect = 7e-34
 Identities = 88/314 (28%), Positives = 138/314 (43%), Gaps = 58/314 (18%)

Query: 112 DQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKEFKEGDEVY 171
           D+V ++V AA LN  D     G     ++PL    G + +G+V +VG+ V   K GD V 
Sbjct: 1   DEVEVEVKAAGLNFRDVLVALGLLPGDETPL----GLECSGIVTRVGSGVTGLKVGDRVM 56

Query: 172 GDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGL-ERTGF 230
           G             G+ A +  V+ RL+   P +L F +AA LP+A  TAY  L +    
Sbjct: 57  GLAP----------GAFATHVRVDARLVVKIPDSLSFEEAATLPVAYLTAYYALVDLARL 106

Query: 231 SAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAAT-SSTRNLEFLKSL-GADLAIDYTKD 288
             G+S+L+   +GGVG   IQLA+ + GA  V AT  S    EFL+ L G    I  ++D
Sbjct: 107 QKGESVLIHAAAGGVGQAAIQLAQHL-GA-EVFATVGSEEKREFLRELGGPVDHIFSSRD 164

Query: 289 -NFEDL------PEKFDVVY-----DAIGQCDRAVKAIKEGGTVVALT-------GAVTP 329
            +F D           DVV      + +     + + +   G  V +          +  
Sbjct: 165 LSFADGILRATGGRGVDVVLNSLSGELL---RASWRCLAPFGRFVEIGKRDILSNSKLGM 221

Query: 330 PGFRFVVT---------------SNGEVLKKLNPYLESGKVKPIIDPKGPFPFSQVVEAF 374
             F   V+                  E+L+++   LE+G +KP+  P    P +  ++AF
Sbjct: 222 RPFLRNVSFSSVDLDQLARERPELLRELLREVLELLEAGVLKPL--PPTVVPSASEIDAF 279

Query: 375 SYIETNKATGKVVI 388
             +++ K  GKVV+
Sbjct: 280 RLMQSGKHIGKVVL 293

Putative enoyl reductase of polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains, at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 293

>gnl|CDD|176198 cd08236, sugar_DH, NAD(P)-dependent sugar dehydrogenases

 Score =  125 bits (316), Expect = 8e-33
 Identities = 75/268 (27%), Positives = 120/268 (44%), Gaps = 39/268 (14%)

Query: 84  MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLP 143
           MKA +    G +      E +  P+    +VL+KV A  +   D  R  G         P
Sbjct: 1   MKALVLTGPGDLRY----EDIPKPEPGPGEVLVKVKACGICGSDIPRYLGTGAY---HPP 53

Query: 144 TVPGYDVAGVVVKVGTQVKEFKEGDEV------------YGDINEKAL------EGPKQF 185
            V G++ +G V +VG+ V +   GD V            Y    E +L       G ++ 
Sbjct: 54  LVLGHEFSGTVEEVGSGVDDLAVGDRVAVNPLLPCGKCEYCKKGEYSLCSNYDYIGSRRD 113

Query: 186 GSLAEYTAVEERLLAPKPKNLDFVQAAGL-PLAIETAYEGLERTGFSAGKSILVLNGSGG 244
           G+ AEY +V  R L   P ++D+ +AA + P A+  A   +   G + G +++V+ G+G 
Sbjct: 114 GAFAEYVSVPARNLIKIPDHVDYEEAAMIEPAAV--ALHAVRLAGITLGDTVVVI-GAGT 170

Query: 245 VGSLVIQLAKQVFGASRVAATS-STRNLEFLKSLGADLAIDYTKDNFEDLPEK-----FD 298
           +G L IQ  K + GA RV A       L   + LGAD  I+  +++ E + E       D
Sbjct: 171 IGLLAIQWLK-ILGAKRVIAVDIDDEKLAVARELGADDTINPKEEDVEKVRELTEGRGAD 229

Query: 299 VVYDAIGQCD---RAVKAIKEGGTVVAL 323
           +V +A G      +A+   + GG VV +
Sbjct: 230 LVIEAAGSPATIEQALALARPGGKVVLV 257

This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Horse liver alcohol dehydrogenase is a dimeric enzyme and each subunit has two domains. The NAD binding domain is in a Rossmann fold and the catalytic domain contains a zinc ion to which substrates bind. There is a cleft between the domains that closes upon formation of the ternary complex. Length = 343

>gnl|CDD|176207 cd08245, CAD, Cinnamyl alcohol dehydrogenases (CAD) and related proteins

 Score =  125 bits (315), Expect = 8e-33
 Identities = 93/329 (28%), Positives = 129/329 (39%), Gaps = 55/329 (16%)

Query: 102 EKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQV 161
           E+V VP+    +VLIK+ A  +   D    +G +    S  P VPG+++ G VV+VG  V
Sbjct: 15  EEVPVPEPGPGEVLIKIEACGVCHTDLHAAEGDWGG--SKYPLVPGHEIVGEVVEVGAGV 72

Query: 162 KEFKEGDEV-----YGDI-------NEKALEGPKQF-------GSLAEYTAVEERLLAPK 202
           +  K GD V      G                 K         G  AEY   +       
Sbjct: 73  EGRKVGDRVGVGWLVGSCGRCEYCRRGLENLCQKAVNTGYTTQGGYAEYMVADAEYTVLL 132

Query: 203 PKNLDFVQAAGLPLAIETAYEGLERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRV 262
           P  L   QAA L  A  T Y  L   G   G+ + VL G GG+G L +Q A+   G   V
Sbjct: 133 PDGLPLAQAAPLLCAGITVYSALRDAGPRPGERVAVL-GIGGLGHLAVQYARA-MGFETV 190

Query: 263 AATSSTRNLEFLKSLGADLAIDYTKDNFEDLPEK-FDVV------YDAIGQCDRAVKAIK 315
           A T S    E  + LGAD  +D   +  E       DV+        A      A+  ++
Sbjct: 191 AITRSPDKRELARKLGADEVVDSGAELDEQAAAGGADVILVTVVSGAAAEA---ALGGLR 247

Query: 316 EGGTVVALTGA-----VTPPGFRFVV--------TSNGEVLKKLNPYLE---SGKVKPII 359
            GG +V L G       +P  F  ++        T  G     L   L+    GKVKP+I
Sbjct: 248 RGGRIV-LVGLPESPPFSPDIFPLIMKRQSIAGSTHGG--RADLQEALDFAAEGKVKPMI 304

Query: 360 DPKGPFPFSQVVEAFSYIETNKATGKVVI 388
           +    FP  Q  EA+  +E      + V+
Sbjct: 305 E---TFPLDQANEAYERMEKGDVRFRFVL 330

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes, or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 330

>gnl|CDD|176216 cd08254, hydroxyacyl_CoA_DH, 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members

 Score =  123 bits (310), Expect = 6e-32
 Identities = 102/354 (28%), Positives = 149/354 (42%), Gaps = 63/354 (17%)

Query: 84  MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAA-----LNPVDGKRRQGKFKAT 138
           MKAW + + G   +L  +E V VP+    +VL+KV AA      L+ +DG         T
Sbjct: 1   MKAWRFHK-GSKGLLVLEE-VPVPEPGPGEVLVKVKAAGVCHSDLHILDGGVP------T 52

Query: 139 DSPLPTVPGYDVAGVVVKVGTQVKEFKEGDEVYGDINEKALE------------------ 180
            + LP   G+++AG VV+VG  V  FK GD V                            
Sbjct: 53  LTKLPLTLGHEIAGTVVEVGAGVTNFKVGDRVAVPAVIPCGACALCRRGRGNLCLNQGMP 112

Query: 181 GPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLERTGFSAGKSILVLN 240
           G    G  AEY  V  R L P P  + F QAA    A+ T Y  + R G       +++ 
Sbjct: 113 GLGIDGGFAEYIVVPARALVPVPDGVPFAQAAVATDAVLTPYHAVVRAGEVKPGETVLVI 172

Query: 241 GSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFED-----LPE 295
           G GG+G   +Q+AK   GA+ +A       LE  K LGAD  ++   D+ +D     L  
Sbjct: 173 GLGGLGLNAVQIAK-AMGAAVIAVDIKEEKLELAKELGADEVLNSLDDSPKDKKAAGLGG 231

Query: 296 KFDVVYDAIGQ---CDRAVKAIKEGGTVVA---LTGAVTPPGFRF------VVTSNG--- 340
            FDV++D +G     + A KA+K GG +V        +T            ++ S G   
Sbjct: 232 GFDVIFDFVGTQPTFEDAQKAVKPGGRIVVVGLGRDKLTVDLSDLIARELRIIGSFGGTP 291

Query: 341 ----EVLKKLNPYLESGKVKPIIDPKGPFPFSQVVEAFSYIETNKATGKVVIHP 390
               EVL      +  GK+ P ++     P  ++ E    +   K  G+VV+ P
Sbjct: 292 EDLPEVLD----LIAKGKLDPQVE---TRPLDEIPEVLERLHKGKVKGRVVLVP 338

This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 338

>gnl|CDD|176187 cd05284, arabinose_DH_like, D-arabinose dehydrogenase

 Score =  121 bits (306), Expect = 2e-31
 Identities = 100/351 (28%), Positives = 146/351 (41%), Gaps = 55/351 (15%)

Query: 84  MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKAT-DSPL 142
           MKA    EYG    L   E V VP+    QVL++V  A +   D     G +       L
Sbjct: 1   MKAARLYEYGKPLRL---EDVPVPEPGPGQVLVRVGGAGVCHSDLHVIDGVWGGILPYKL 57

Query: 143 PTVPGYDVAGVVVKVGTQVKEFKEGDEV--YGDINEKA----LEGPKQF----------- 185
           P   G++ AG V +VG+ V   KEGD V  +             G + +           
Sbjct: 58  PFTLGHENAGWVEEVGSGVDGLKEGDPVVVHPPWGCGTCRYCRRGEENYCENARFPGIGT 117

Query: 186 -GSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLERTG--FSAGKSILVLNGS 242
            G  AEY  V  R L   P+ LD V+AA L  A  TAY  +++       G +++V+ G 
Sbjct: 118 DGGFAEYLLVPSRRLVKLPRGLDPVEAAPLADAGLTAYHAVKKALPYLDPGSTVVVI-GV 176

Query: 243 GGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFEDLPE-----KF 297
           GG+G + +Q+ + +  A+ +A   S   L+  + LGAD  ++ + D  E++ E       
Sbjct: 177 GGLGHIAVQILRALTPATVIAVDRSEEALKLAERLGADHVLNASDDVVEEVRELTGGRGA 236

Query: 298 DVVYDAIG---QCDRAVKAIKEGG--TVVALTGAVTPPGFRF------VVTSNG------ 340
           D V D +G       A K + +GG   +V   G    P          V+ S        
Sbjct: 237 DAVIDFVGSDETLALAAKLLAKGGRYVIVGYGGHGRLPTSDLVPTEISVIGSLWGTRAEL 296

Query: 341 -EVLKKLNPYLESGKVKPIIDPKGPFPFSQVVEAFSYIETNKATGKVVIHP 390
            EV+  L    ESGKVK  I     FP     EA   +   + TG+ V+ P
Sbjct: 297 VEVV-ALA---ESGKVKVEIT---KFPLEDANEALDRLREGRVTGRAVLVP 340

This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 340

>gnl|CDD|176205 cd08243, quinone_oxidoreductase_like_1, Quinone oxidoreductase (QOR)

 Score =  120 bits (303), Expect = 4e-31
 Identities = 94/334 (28%), Positives = 142/334 (42%), Gaps = 44/334 (13%)

Query: 84  MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLP 143
           MKA +  + GG +VLK  E + +P+ K   VLI+V A  LN  +   RQG   +     P
Sbjct: 1   MKAIVIEQPGGPEVLKLRE-IPIPEPKPGWVLIRVKAFGLNRSEIFTRQGHSPSVK--FP 57

Query: 144 TVPGYDVAGVVVKVGTQVKEFKEGDEVYGDINEKALEGPKQF---GSLAEYTAVEERLLA 200
            V G +  G V +       F  G  V          G       GS AEYT V    + 
Sbjct: 58  RVLGIEAVGEVEE--APGGTFTPGQRVA------TAMGGMGRTFDGSYAEYTLVPNEQVY 109

Query: 201 PKPKNLDFVQAAGLPLAIETAYEGLERT-GFSAGKSILVLNGSGGVGSLVIQLAKQVFGA 259
               +L + + A LP    TA+  L R+ G   G ++L+  G+  VG   ++LAK   GA
Sbjct: 110 AIDSDLSWAELAALPETYYTAWGSLFRSLGLQPGDTLLIRGGTSSVGLAALKLAKA-LGA 168

Query: 260 SRVAATSSTRNLEFLKSLGADLAIDYTKDNFEDL---PEKFDVVYDAIG--QCDRAVKAI 314
           +  A T S      LK LGAD  +       E L   P  FD V + +G      +++ +
Sbjct: 169 TVTATTRSPERAALLKELGADEVVIDDGAIAEQLRAAPGGFDKVLELVGTATLKDSLRHL 228

Query: 315 KEGGTVVALTG---------------AVTPPGFRFVVTS-----NGEVLKKLNPYLESGK 354
           + GG V  +TG                +       +  S         L++L  ++ +G 
Sbjct: 229 RPGGIV-CMTGLLGGQWTLEDFNPMDDIPSGVNLTLTGSSSGDVPQTPLQELFDFVAAGH 287

Query: 355 VKPIIDPKGPFPFSQVVEAFSYIETNKATGKVVI 388
           +         F F ++VEA +Y+E+N+A GKVV+
Sbjct: 288 LDIPPSKV--FTFDEIVEAHAYMESNRAFGKVVV 319

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 320

>gnl|CDD|176208 cd08246, crotonyl_coA_red, crotonyl-CoA reductase

 Score =  120 bits (303), Expect = 1e-30
 Identities = 82/275 (29%), Positives = 125/275 (45%), Gaps = 47/275 (17%)

Query: 77  VGTVPSEMKAWL-----YGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALN------- 124
           +G VP +M A+      YG+      L   E V VP++   +VL+ V+AA +N       
Sbjct: 6   LGVVPEKMYAFAIRPERYGDPAQAIQL---EDVPVPELGPGEVLVAVMAAGVNYNNVWAA 62

Query: 125 ---PVDG-KRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKEFKEGDEVY-------GD 173
              PV     RQ + +        + G D +G+V  VG  VK +K GDEV        G+
Sbjct: 63  LGEPVSTFAARQRRGRDEPY---HIGGSDASGIVWAVGEGVKNWKVGDEVVVHCSVWDGN 119

Query: 174 INEKALEGP------------KQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETA 221
             E+A   P              +GS A++  V+   L PKPK+L + +AA   L   TA
Sbjct: 120 DPERAGGDPMFDPSQRIWGYETNYGSFAQFALVQATQLMPKPKHLSWEEAAAYMLVGATA 179

Query: 222 YEGL---ERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLG 278
           Y  L          G ++L+   SGG+GS+ IQLA+   GA+ VA  SS    E+ ++LG
Sbjct: 180 YRMLFGWNPNTVKPGDNVLIWGASGGLGSMAIQLARAA-GANPVAVVSSEEKAEYCRALG 238

Query: 279 ADLAIDYTKDNFEDLPEKFDVVYDAIGQCDRAVKA 313
           A+  I+  + +F+      DV  +A     +  + 
Sbjct: 239 AEGVIN--RRDFDHWGVLPDVNSEAYTAWTKEARR 271

Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. Length = 393

>gnl|CDD|214840 smart00829, PKS_ER, Enoylreductase

 Score =  115 bits (292), Expect = 9e-30
 Identities = 84/317 (26%), Positives = 127/317 (40%), Gaps = 74/317 (23%)

Query: 116 IKVVAAALNPVD-----GKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKEFKEGDEV 170
           I+V AA LN  D     G            P   V G + AGVV +VG  V     GD V
Sbjct: 1   IEVRAAGLNFRDVLIALGL----------YPGEAVLGGECAGVVTRVGPGVTGLAVGDRV 50

Query: 171 YGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGL-ERTG 229
            G             G+ A     + RL+ P P    F +AA +P+   TAY  L +   
Sbjct: 51  MGLAP----------GAFATRVVTDARLVVPIPDGWSFEEAATVPVVFLTAYYALVDLAR 100

Query: 230 FSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRN-LEFLKSLGADLA-IDYTK 287
              G+S+L+   +GGVG   IQLA+ + GA  V AT+ +    +FL++LG     I  ++
Sbjct: 101 LRPGESVLIHAAAGGVGQAAIQLARHL-GA-EVFATAGSPEKRDFLRALGIPDDHIFSSR 158

Query: 288 D-NFEDL------PEKFDVVY-----DAIGQCDRAVKAIKEGGTVV-------------- 321
           D +F D           DVV      + +   D +++ +  GG  V              
Sbjct: 159 DLSFADEILRATGGRGVDVVLNSLSGEFL---DASLRCLAPGGRFVEIGKRDIRDNSQLA 215

Query: 322 --ALTGAVTPPGFRFV----VTSNGEV----LKKLNPYLESGKVKPIIDPKGPFPFSQVV 371
                  V+   +  V    +    +     L ++      G ++P+  P   FP S   
Sbjct: 216 MAPFRPNVS---YHAVDLDALEEGPDRIRELLAEVLELFAEGVLRPL--PVTVFPISDAE 270

Query: 372 EAFSYIETNKATGKVVI 388
           +AF Y++  K  GKVV+
Sbjct: 271 DAFRYMQQGKHIGKVVL 287

Enoylreductase in Polyketide synthases. Length = 287

>gnl|CDD|188164 TIGR01751, crot-CoA-red, crotonyl-CoA reductase

 Score =  114 bits (288), Expect = 1e-28
 Identities = 78/254 (30%), Positives = 109/254 (42%), Gaps = 37/254 (14%)

Query: 77  VGTVPSEMKAWLYGE--YGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALN---------- 124
           +  VP  M A+   E   G        E V VP++   +VL+ V+AA +N          
Sbjct: 1   ITVVPETMYAFAIREERDGDPRQAIQLEVVPVPELGPGEVLVAVMAAGVNYNNVWAALGE 60

Query: 125 PVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKEFKEGDEVYGDINEKALEGPK- 183
           PV       K+   D P   + G D +GVV +VG  V  +K GDEV     +  L  P  
Sbjct: 61  PVSTFAFLRKYGKLDLPF-HIIGSDASGVVWRVGPGVTRWKVGDEVVASCLQVDLTAPDG 119

Query: 184 ------------------QFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGL 225
                              FGS AE+  V++  L PKPK+L + +AA   L   TAY  L
Sbjct: 120 RDGDPMLSSEQRIWGYETNFGSFAEFALVKDYQLMPKPKHLTWEEAACPGLTGATAYRQL 179

Query: 226 ---ERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLA 282
                     G ++L+   +GG+GS   QLA+   G + VA  SS    E+ +SLGA+  
Sbjct: 180 VGWNPAAVKPGDNVLIWGAAGGLGSYATQLAR-AGGGNPVAVVSSPEKAEYCRSLGAEAV 238

Query: 283 IDYTKDNFED-LPE 295
           ID         LP+
Sbjct: 239 IDRNDFGHWGRLPD 252

The enzyme modelled by This model is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae. Length = 398

>gnl|CDD|176257 cd08297, CAD3, Cinnamyl alcohol dehydrogenases (CAD)

 Score =  113 bits (285), Expect = 2e-28
 Identities = 97/348 (27%), Positives = 144/348 (41%), Gaps = 52/348 (14%)

Query: 84  MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLP 143
           MKA +  E+G        + V VP+    +VL+K+ A+ +   D     G +      LP
Sbjct: 1   MKAAVVEEFGEKPYEV--KDVPVPEPGPGEVLVKLEASGVCHTDLHAALGDW-PVKPKLP 57

Query: 144 TVPGYDVAGVVVKVGTQVKEFKEGDEV----------------YGDIN---EKALEGPKQ 184
            + G++ AGVVV VG  V   K GD V                 GD      +   G   
Sbjct: 58  LIGGHEGAGVVVAVGPGVSGLKVGDRVGVKWLYDACGKCEYCRTGDETLCPNQKNSGYTV 117

Query: 185 FGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLERTGFSAGKSILVLNGSGG 244
            G+ AEY   + R + P P  L F QAA L  A  T Y+ L++ G   G  +++    GG
Sbjct: 118 DGTFAEYAIADARYVTPIPDGLSFEQAAPLLCAGVTVYKALKKAGLKPGDWVVISGAGGG 177

Query: 245 VGSLVIQLAKQVFGASRVAATSS-TRNLEFLKSLGADLAIDYTKDN-FEDLPEKFD---- 298
           +G L +Q AK +    RV A       LE  K LGAD  +D+ K +  E + E       
Sbjct: 178 LGHLGVQYAKAMGL--RVIAIDVGDEKLELAKELGADAFVDFKKSDDVEAVKELTGGGGA 235

Query: 299 ----VVYDAIGQCDRAVKAIKEGGTVVAL----TGAVTPPGFRFV----------VTSNG 340
               V   +    ++A+  ++ GGT+V +     G +    F  V          V +  
Sbjct: 236 HAVVVTAVSAAAYEQALDYLRPGGTLVCVGLPPGGFIPLDPFDLVLRGITIVGSLVGTRQ 295

Query: 341 EVLKKLNPYLESGKVKPIIDPKGPFPFSQVVEAFSYIETNKATGKVVI 388
           ++ + L      GKVKP I      P   + E F  +E  K  G+VV+
Sbjct: 296 DLQEALEFAAR-GKVKPHIQ---VVPLEDLNEVFEKMEEGKIAGRVVV 339

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 341

>gnl|CDD|176645 cd05282, ETR_like, 2-enoyl thioester reductase-like

 Score =  111 bits (281), Expect = 5e-28
 Identities = 82/313 (26%), Positives = 126/313 (40%), Gaps = 51/313 (16%)

Query: 112 DQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKEFKEGDEVY 171
            +VL++++AA +NP D     G + +   PLP VPG +  GVVV+VG+ V     G  V 
Sbjct: 27  GEVLVRMLAAPINPSDLITISGAYGSR-PPLPAVPGNEGVGVVVEVGSGVSGLLVGQRV- 84

Query: 172 GDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGL---PLAIETAYEGLERT 228
                    G    G+  EY       L P P ++   QAA L   PL   TA+  L   
Sbjct: 85  ------LPLGG--EGTWQEYVVAPADDLIPVPDSISDEQAAMLYINPL---TAWLMLTEY 133

Query: 229 GFSAGKSILVLNGSG-GVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTK 287
                   ++ N +   VG ++IQLAK   G   +        +E LK+LGAD  ID + 
Sbjct: 134 LKLPPGDWVIQNAANSAVGRMLIQLAKL-LGFKTINVVRRDEQVEELKALGADEVIDSSP 192

Query: 288 DNFED------LPEKFDVVYDAIG--QCDRAVKAIKEGGTVV---ALTGAVTPP----GF 332
           ++               +  DA+G     R  ++++ GGT+V    L+G   P       
Sbjct: 193 EDLAQRVKEATGGAGARLALDAVGGESATRLARSLRPGGTLVNYGLLSGEPVPFPRSVFI 252

Query: 333 RFVVTSNG----------------EVLKKLNPYLESGKVKPIIDPKGPFPFSQVVEAFSY 376
              +T  G                E   ++   +E+G +   +  K  FP     EA + 
Sbjct: 253 FKDITVRGFWLRQWLHSATKEAKQETFAEVIKLVEAGVLTTPVGAK--FPLEDFEEAVAA 310

Query: 377 IETNKATGKVVIH 389
            E     GKV++ 
Sbjct: 311 AEQPGRGGKVLLT 323

2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 323

>gnl|CDD|176206 cd08244, MDR_enoyl_red, Possible enoyl reductase

 Score =  109 bits (275), Expect = 3e-27
 Identities = 97/338 (28%), Positives = 140/338 (41%), Gaps = 45/338 (13%)

Query: 84  MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSP-L 142
           M+A    E+G  +VL   E V  P     QV I V AA ++ VD + R G       P L
Sbjct: 1   MRAIRLHEFGPPEVLVP-EDVPDPVPGPGQVRIAVAAAGVHFVDTQLRSGWGPGPFPPEL 59

Query: 143 PTVPGYDVAGVVVKVGTQVKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPK 202
           P VPG +VAGVV  VG  V     G  V            +  G  AE    +   L P 
Sbjct: 60  PYVPGGEVAGVVDAVGPGVDPAWLGRRVVAHT-------GRAGGGYAELAVADVDSLHPV 112

Query: 203 PKNLDFVQAAGLPLAIETAYEGLERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRV 262
           P  LD   A  +     TA   L+    + G  +LV   +GG+GSL++QLAK   GA+ V
Sbjct: 113 PDGLDLEAAVAVVHDGRTALGLLDLATLTPGDVVLVTAAAGGLGSLLVQLAKAA-GATVV 171

Query: 263 AATSSTRNLEFLKSLGADLAIDYTKDNFEDLPEK---------FDVVYDAIGQC--DRAV 311
            A         +++LGAD+A+DYT+    D P++           VV D +G      A+
Sbjct: 172 GAAGGPAKTALVRALGADVAVDYTR---PDWPDQVREALGGGGVTVVLDGVGGAIGRAAL 228

Query: 312 KAIKEGGTVV---ALTGAVTPP--------GFRFVVTSNGEVLKKLNPYLES-------- 352
             +  GG  +     +G  T          G   V     +  +     LE+        
Sbjct: 229 ALLAPGGRFLTYGWASGEWTALDEDDARRRGVTVVGLLGVQAERGGLRALEARALAEAAA 288

Query: 353 GKVKPIIDPKGPFPFSQVVEAFSYIETNKATGKVVIHP 390
           G++ P++     FP  +  EA + +E     GKV++ P
Sbjct: 289 GRLVPVVG--QTFPLERAAEAHAALEARSTVGKVLLLP 324

Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers, with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 324

>gnl|CDD|176197 cd08235, iditol_2_DH_like, L-iditol 2-dehydrogenase

 Score =  108 bits (273), Expect = 8e-27
 Identities = 104/367 (28%), Positives = 153/367 (41%), Gaps = 85/367 (23%)

Query: 84  MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLP 143
           MKA +      V +    E+V VP+    +VL+KV A  +   D K+ +G    TD   P
Sbjct: 1   MKAAVLHGPNDVRL----EEVPVPEPGPGEVLVKVRACGICGTDVKKIRGGH--TDLKPP 54

Query: 144 TVPGYDVAGVVVKVGTQVKEFKEGDEVYGDIN-----------------EKALEGPKQF- 185
            + G+++AG +V+VG  V  FK GD V+   +                     +    + 
Sbjct: 55  RILGHEIAGEIVEVGDGVTGFKVGDRVFVAPHVPCGECHYCLRGNENMCPNYKKFGNLYD 114

Query: 186 GSLAEY-----TAVEERLLAPKPKNLDFVQAAGL-PLAIETAYEGLERTGFSAGKSILVL 239
           G  AEY      AV+   +   P N+ F +AA + PLA         + G   G ++LV+
Sbjct: 115 GGFAEYVRVPAWAVKRGGVLKLPDNVSFEEAALVEPLA--CCINAQRKAGIKPGDTVLVI 172

Query: 240 NGSGGVGSLVIQLAKQVFGASRVAAT--SSTRNLEFLKSLGADLAIDYTKDNFEDLPEK- 296
            G+G +G L   LAK   GA +V  +  +  R LEF K LGAD  ID  +   EDL EK 
Sbjct: 173 -GAGPIGLLHAMLAKA-SGARKVIVSDLNEFR-LEFAKKLGADYTIDAAE---EDLVEKV 226

Query: 297 --------FDVVYDAIG----QCDRAVKAIKEGGTVVALTGAVTPPGFRFVVTSNG---- 340
                    DVV  A G    Q   A++ +++GG ++       P G    +  N     
Sbjct: 227 RELTDGRGADVVIVATGSPEAQAQ-ALELVRKGGRILFF--GGLPKGSTVNIDPNLIHYR 283

Query: 341 ----------------EVLKKLNPYLESGK--VKPIIDPKGPFPFSQVVEAFSYIETNKA 382
                           E L+     + SGK  VK +I  +  FP   + EAF      K+
Sbjct: 284 EITITGSYAASPEDYKEALE----LIASGKIDVKDLITHR--FPLEDIEEAFELAADGKS 337

Query: 383 TGKVVIH 389
             K+VI 
Sbjct: 338 L-KIVIT 343

Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 343

>gnl|CDD|176188 cd05285, sorbitol_DH, Sorbitol dehydrogenase

 Score =  106 bits (267), Expect = 6e-26
 Identities = 100/358 (27%), Positives = 140/358 (39%), Gaps = 81/358 (22%)

Query: 94  GVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVD------GKRRQGKFKATDSPLPTVPG 147
           G   L+  E+  +P+    +VL++V A  +   D      G  R G F   +   P V G
Sbjct: 6   GPGDLRL-EERPIPEPGPGEVLVRVRAVGICGSDVHYYKHG--RIGDFVVKE---PMVLG 59

Query: 148 YDVAGVVVKVGTQVKEFKEGDEVYGDINEKALE-------------G------------- 181
           ++ AG VV VG+ V   K GD V       A+E             G             
Sbjct: 60  HESAGTVVAVGSGVTHLKVGDRV-------AIEPGVPCRTCEFCKSGRYNLCPDMRFAAT 112

Query: 182 PKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGL-PLAIETAYEGLERTGFSAGKSILVLN 240
           P   G+L  Y           P N+   + A + PL++        R G   G ++LV  
Sbjct: 113 PPVDGTLCRYVNHPADFCHKLPDNVSLEEGALVEPLSV--GVHACRRAGVRPGDTVLVF- 169

Query: 241 GSGGVGSLVIQLAKQVFGASRVAAT-SSTRNLEFLKSLGADLAIDYTKDNFEDLPEK--- 296
           G+G +G L   +AK  FGA++V  T      LEF K LGA   ++   ++  +  EK   
Sbjct: 170 GAGPIGLLTAAVAK-AFGATKVVVTDIDPSRLEFAKELGATHTVNVRTEDTPESAEKIAE 228

Query: 297 ------FDVVYDAIG--QCDR-AVKAIKEGGTVVALTG-AVTPPGFRFVVTSNGEV-LKK 345
                  DVV +  G   C + A+ A + GGTVV L G             S  E+ ++ 
Sbjct: 229 LLGGKGPDVVIECTGAESCIQTAIYATRPGGTVV-LVGMGKPEVTLPLSAASLREIDIRG 287

Query: 346 LNPY----------LESGK--VKPIIDPKGPFPFSQVVEAFSYIETNKATG-KVVIHP 390
           +  Y          L SGK  VKP+I     FP    VEAF      K    KVVI  
Sbjct: 288 VFRYANTYPTAIELLASGKVDVKPLIT--HRFPLEDAVEAFETAAKGKKGVIKVVIEG 343

Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 343

>gnl|CDD|184316 PRK13771, PRK13771, putative alcohol dehydrogenase; Provisional

 Score =  105 bits (265), Expect = 8e-26
 Identities = 85/327 (25%), Positives = 141/327 (43%), Gaps = 47/327 (14%)

Query: 102 EKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQV 161
           E+V  P+  +D+V+IKV  A L   D  + QG +       P + G++V G V +VG  V
Sbjct: 16  EEVPDPKPGKDEVVIKVNYAGLCYRDLLQLQGFYPR--MKYPVILGHEVVGTVEEVGENV 73

Query: 162 KEFKEGDEVYGDINE------------------KALEGPKQFGSLAEYTAVEERLLAPKP 203
           K FK GD V   +                    +   G +  G  AEY  V+   L   P
Sbjct: 74  KGFKPGDRVASLLYAPDGTCEYCRSGEEAYCKNRLGYGEELDGFFAEYAKVKVTSLVKVP 133

Query: 204 KNLDFVQAAGLPLAIETAYEGLERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVA 263
            N+    A  +P      Y GL R G   G+++LV    GGVG   IQ+AK   GA  +A
Sbjct: 134 PNVSDEGAVIVPCVTGMVYRGLRRAGVKKGETVLVTGAGGGVGIHAIQVAK-ALGAKVIA 192

Query: 264 ATSSTRNLEFLKSLGADLAIDYTKDNFEDLPEKF---DVVYDAIG--QCDRAVKAIKEGG 318
            TSS    + +    AD  I  +K  F +  +K    D+V + +G    + +++++  GG
Sbjct: 193 VTSSESKAKIVSKY-ADYVIVGSK--FSEEVKKIGGADIVIETVGTPTLEESLRSLNMGG 249

Query: 319 TVVALTGAVTP-PGF--------------RFVVTSNGEVLKKLNPYLESGKVKPIIDPKG 363
            ++   G V P P +                 +++    +++    +  GK+KP+I    
Sbjct: 250 KII-QIGNVDPSPTYSLRLGYIILKDIEIIGHISATKRDVEEALKLVAEGKIKPVI--GA 306

Query: 364 PFPFSQVVEAFSYIETNKATGKVVIHP 390
               S++ +A   ++     GK+++ P
Sbjct: 307 EVSLSEIDKALEELKDKSRIGKILVKP 333

Length = 334

>gnl|CDD|176231 cd08270, MDR4, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score =  104 bits (261), Expect = 2e-25
 Identities = 93/323 (28%), Positives = 129/323 (39%), Gaps = 63/323 (19%)

Query: 98  LKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVV-- 155
           L+  E V  PQ    + L++V A +LN     R + KF A + P   VPG+D AGVV   
Sbjct: 14  LRLGE-VPDPQPAPHEALVRVAAISLN-----RGELKF-AAERPDGAVPGWDAAGVVERA 66

Query: 156 -------KVGTQVKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDF 208
                   VG +V                        G+ AE  AV    LA  P  + F
Sbjct: 67  AADGSGPAVGARVVGLGAM------------------GAWAELVAVPTGWLAVLPDGVSF 108

Query: 209 VQAAGLPLAIETAYEGLERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSST 268
            QAA LP+A  TA   L R G   G+ +LV   SGGVG   +QLA    GA  VA   S 
Sbjct: 109 AQAATLPVAGVTALRALRRGGPLLGRRVLVTGASGGVGRFAVQLAALA-GAHVVAVVGSP 167

Query: 269 RNLEFLKSLGADLAIDYTKDNFEDLPEKFDVVYDAIG--QCDRAVKAIKEGGTVVAL--- 323
              E L+ LG   A +      E      D+V D++G  Q  RA++ +  GGTVV++   
Sbjct: 168 ARAEGLRELG---AAEVVVGGSELSGAPVDLVVDSVGGPQLARALELLAPGGTVVSVGSS 224

Query: 324 ---------------TGAVTPPGFR-FVVTSNGEVLKKLNPYLESGKVKPIIDPKGPFP- 366
                           G      F  +        L +L   + +G++ P I  +G +  
Sbjct: 225 SGEPAVFNPAAFVGGGGGRRLYTFFLYDGEPLAADLARLLGLVAAGRLDPRIGWRGSWTE 284

Query: 367 FSQVVEAFSYIETNKATGKVVIH 389
             +  EA       +  GK V+ 
Sbjct: 285 IDEAAEALL---ARRFRGKAVLD 304

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 305

>gnl|CDD|176258 cd08298, CAD2, Cinnamyl alcohol dehydrogenases (CAD)

 Score =  103 bits (260), Expect = 5e-25
 Identities = 84/273 (30%), Positives = 115/273 (42%), Gaps = 55/273 (20%)

Query: 84  MKAWLYGEYGGVDV--LKFDEKVTVPQVKEDQVLIKVVAAA-----LNPVDGKRRQGKFK 136
           MKA +  + G ++   L+  E V VP+    +VLIKV A       L+ V+G     K  
Sbjct: 1   MKAMVLEKPGPIEENPLRLTE-VPVPEPGPGEVLIKVEACGVCRTDLHIVEGDLPPPK-- 57

Query: 137 ATDSPLPTVPGYDVAGVVVKVGTQVKEFKEGDEV-------------Y---GDINEKALE 180
                LP +PG+++ G V  VG  V  F  GD V             Y   G  N   L 
Sbjct: 58  -----LPLIPGHEIVGRVEAVGPGVTRFSVGDRVGVPWLGSTCGECRYCRSGREN---LC 109

Query: 181 GPKQF------GSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLERTGFSAGK 234
              +F      G  AEY   +ER   P P++ D  +AA L  A    Y  L+  G   G+
Sbjct: 110 DNARFTGYTVDGGYAEYMVADERFAYPIPEDYDDEEAAPLLCAGIIGYRALKLAGLKPGQ 169

Query: 235 SILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFEDLP 294
             L L G G    L +Q+A+   GA   A T S  + E  + LGAD A D      +  P
Sbjct: 170 -RLGLYGFGASAHLALQIAR-YQGAEVFAFTRSGEHQELARELGADWAGDSD----DLPP 223

Query: 295 EKFDV------VYDAIGQCDRAVKAIKEGGTVV 321
           E  D       V   +     A++A+K+GG VV
Sbjct: 224 EPLDAAIIFAPVGALVPA---ALRAVKKGGRVV 253

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 329

>gnl|CDD|176183 cd05280, MDR_yhdh_yhfp, Yhdh and yhfp-like putative quinone oxidoreductases

 Score =  103 bits (258), Expect = 9e-25
 Identities = 78/271 (28%), Positives = 112/271 (41%), Gaps = 40/271 (14%)

Query: 84  MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLP 143
            KA +  E  G  V  F   + +  + E  VLI+V  ++LN  D     G    T    P
Sbjct: 1   FKALVVEEQDG-GVSLFLRTLPLDDLPEGDVLIRVHYSSLNYKDALAATGNGGVT-RNYP 58

Query: 144 TVPGYDVAGVVVKVGTQVKEFKEGDEVY---GDINEKALEGPKQFGSLAEYTAVEERLLA 200
             PG D AG VV        F+EGDEV     D+      G    G  AEY  V    + 
Sbjct: 59  HTPGIDAAGTVVSSD--DPRFREGDEVLVTGYDL------GMNTDGGFAEYVRVPADWVV 110

Query: 201 PKPKNLDFVQA-----AGLPLAIETAYEGLERTGFSAGKS-ILVLNGSGGVGSLVIQLAK 254
           P P+ L   +A     AG   A+  +   LE  G +     +LV   +GGVGS+ + +  
Sbjct: 111 PLPEGLSLREAMILGTAGFTAAL--SVHRLEDNGQTPEDGPVLVTGATGGVGSIAVAILA 168

Query: 255 QVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFEDLPEK------FDVVYDAIG--Q 306
           ++ G + VA T      ++LKSLGA   +D  +++  D  +K      +    D +G   
Sbjct: 169 KL-GYTVVALTGKEEQADYLKSLGASEVLD--REDLLDESKKPLLKARWAGAIDTVGGDV 225

Query: 307 CDRAVKAIKEGGTVVA--------LTGAVTP 329
               +K  K GG V +        LT  V P
Sbjct: 226 LANLLKQTKYGGVVASCGNAAGPELTTTVLP 256

Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 325

>gnl|CDD|176217 cd08255, 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like, 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members

 Score =  101 bits (254), Expect = 1e-24
 Identities = 65/188 (34%), Positives = 83/188 (44%), Gaps = 22/188 (11%)

Query: 141 PLPTVPGYDVAGVVVKVGTQVKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLA 200
           PLP  PGY   G VV+VG+ V  FK GD V+             FG  AE   V   LL 
Sbjct: 19  PLPLPPGYSSVGRVVEVGSGVTGFKPGDRVFC------------FGPHAERVVVPANLLV 66

Query: 201 PKPKNLDFVQAAGLPLAIETAYEGLERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGAS 260
           P P  L   +AA   LA  TA  G+       G+ + V+ G G VG L  QLAK   GA 
Sbjct: 67  PLPDGLPPERAALTALA-ATALNGVRDAEPRLGERVAVV-GLGLVGLLAAQLAKA-AGAR 123

Query: 261 RVAATS-STRNLEFLKSLG-ADLAIDYTKDNFEDLPEKFDVVYDAIGQ---CDRAVKAIK 315
            V          E  ++LG AD     T D  E      DVV +A G     + A++ ++
Sbjct: 124 EVVGVDPDAARRELAEALGPADPVAADTAD--EIGGRGADVVIEASGSPSALETALRLLR 181

Query: 316 EGGTVVAL 323
           + G VV +
Sbjct: 182 DRGRVVLV 189

This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 277

>gnl|CDD|176222 cd08261, Zn_ADH7, Alcohol dehydrogenases of the MDR family

 Score =  102 bits (257), Expect = 1e-24
 Identities = 99/336 (29%), Positives = 133/336 (39%), Gaps = 72/336 (21%)

Query: 107 PQVKEDQVLIKVVAAAL-----------NPVDGKRRQGKFKATDSPLPTVPGYDVAGVVV 155
           P     +VL++V    +           NP              +  P + G++++G VV
Sbjct: 20  PVPGAGEVLVRVKRVGICGSDLHIYHGRNPF-------------ASYPRILGHELSGEVV 66

Query: 156 KVGTQVKEFKEGDEVYGDI-------------------NEKALEGPKQFGSLAEYTAVEE 196
           +VG  V   K GD V  D                    N + L G  + G  AEY  V  
Sbjct: 67  EVGEGVAGLKVGDRVVVDPYISCGECYACRKGRPNCCENLQVL-GVHRDGGFAEYIVVPA 125

Query: 197 RLLAPKPKNLDFVQAAGL-PLAIETAYEGLERTGFSAGKSILVLNGSGGVGSLVIQLAKQ 255
             L   P+ L   QAA + PLAI      + R G +AG ++LV+ G+G +G  VIQ+AK 
Sbjct: 126 DAL-LVPEGLSLDQAALVEPLAI--GAHAVRRAGVTAGDTVLVV-GAGPIGLGVIQVAKA 181

Query: 256 VFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFEDLP------EKFDVVYDAIGQCD- 308
                 V      R LEF + LGAD  I+   ++           E  DVV DA G    
Sbjct: 182 RGARVIVVDIDDER-LEFARELGADDTINVGDEDVAARLRELTDGEGADVVIDATGNPAS 240

Query: 309 --RAVKAIKEGGTVVAL---TGAVTPPGFRFV---VT------SNGEVLKKLNPYLESGK 354
              AV+ +  GG VV +    G VT P   F    +T      +  E    +   LESGK
Sbjct: 241 MEEAVELVAHGGRVVLVGLSKGPVTFPDPEFHKKELTILGSRNATREDFPDVIDLLESGK 300

Query: 355 VKPIIDPKGPFPFSQVVEAFSYIETNKA-TGKVVIH 389
           V P       FPF  V EAF   E       KV+I 
Sbjct: 301 VDPEALITHRFPFEDVPEAFDLWEAPPGGVIKVLIE 336

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 337

>gnl|CDD|176202 cd08240, 6_hydroxyhexanoate_dh_like, 6-hydroxyhexanoate dehydrogenase

 Score =  102 bits (257), Expect = 2e-24
 Identities = 94/356 (26%), Positives = 139/356 (39%), Gaps = 55/356 (15%)

Query: 84  MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVD----------GKRRQG 133
           MKA    E G    L+  E +  P+    +VL+KV A  +   D          G  +  
Sbjct: 1   MKAAAVVEPG--KPLEEVE-IDTPKPPGTEVLVKVTACGVCHSDLHIWDGGYDLGGGKTM 57

Query: 134 KFKATDSPLPTVPGYDVAGVVVKVGTQVKEFKEGDE--VY-------------GDINE-- 176
                   LP V G+++ G VV VG    + K GD+  VY             GD N   
Sbjct: 58  SLDDRGVKLPLVLGHEIVGEVVAVGPDAADVKVGDKVLVYPWIGCGECPVCLAGDENLCA 117

Query: 177 -KALEGPKQFGSLAEYTAVE-ERLLAPKPKNLDFVQAAGLPLAIETAYEGLERTGFSAGK 234
                G  Q G  AEY  V   R L   P  LD   AA L  +  TAY  +++       
Sbjct: 118 KGRALGIFQDGGYAEYVIVPHSRYLVD-PGGLDPALAATLACSGLTAYSAVKKLMPLVAD 176

Query: 235 SILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAID-----YTKDN 289
             +V+ G+GG+G + + L K +  A+ +        LE  K+ GAD+ ++       K  
Sbjct: 177 EPVVIIGAGGLGLMALALLKALGPANIIVVDIDEAKLEAAKAAGADVVVNGSDPDAAKRI 236

Query: 290 FEDLPEKFDVVYDAIGQCD---RAVKAIKEGGT--VVALTG--AVTP-PGFRF------- 334
            +      D V D +        A   + +GG   +V L G  A  P P           
Sbjct: 237 IKAAGGGVDAVIDFVNNSATASLAFDILAKGGKLVLVGLFGGEATLPLPLLPLRALTIQG 296

Query: 335 VVTSNGEVLKKLNPYLESGKVKPIIDPKGPFPFSQVVEAFSYIETNKATGKVVIHP 390
               + E L++L    ++GK+KPI  P    P S V +A   ++  K  G+ V+ P
Sbjct: 297 SYVGSLEELRELVALAKAGKLKPI--PLTERPLSDVNDALDDLKAGKVVGRAVLKP 350

6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains, at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 350

>gnl|CDD|176212 cd08250, Mgc45594_like, Mgc45594 gene product and other MDR family members

 Score =  101 bits (253), Expect = 5e-24
 Identities = 91/325 (28%), Positives = 136/325 (41%), Gaps = 55/325 (16%)

Query: 101 DEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQ 160
           D  V +P   E  VL+K     +N  D     G++     P P   G++  G VV VG  
Sbjct: 22  DVPVPLPGPGE--VLVKNRFVGINASDINFTAGRYDPGVKP-PFDCGFEGVGEVVAVGEG 78

Query: 161 VKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIE- 219
           V +FK GD V              FG+ AEY  V  R   P P+    ++   LPL +  
Sbjct: 79  VTDFKVGDAV----------ATMSFGAFAEYQVVPARHAVPVPE----LKPEVLPLLVSG 124

Query: 220 -TAYEGLERTG-FSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSL 277
            TA   LE  G   +G+++LV   +GG G   +QLAK   G   +   SS    EFLKSL
Sbjct: 125 LTASIALEEVGEMKSGETVLVTAAAGGTGQFAVQLAKL-AGCHVIGTCSSDEKAEFLKSL 183

Query: 278 GADLAIDYTKDNFEDL-----PEKFDVVYDAIG--QCDRAVKAIKEGGTVV---ALTGAV 327
           G D  I+Y  ++  ++     P+  DVVY+++G    D  V  +   G ++    ++G  
Sbjct: 184 GCDRPINYKTEDLGEVLKKEYPKGVDVVYESVGGEMFDTCVDNLALKGRLIVIGFISGYQ 243

Query: 328 TPPGFRFV-------------VTSNG-----------EVLKKLNPYLESGKVKPIIDPKG 363
           +  G   V              +  G           + L +L    + GK+   +DP  
Sbjct: 244 SGTGPSPVKGATLPPKLLAKSASVRGFFLPHYAKLIPQHLDRLLQLYQRGKLVCEVDPTR 303

Query: 364 PFPFSQVVEAFSYIETNKATGKVVI 388
                 V +A  Y+ + K  GKVV+
Sbjct: 304 FRGLESVADAVDYLYSGKNIGKVVV 328

Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. Length = 329

>gnl|CDD|176221 cd08260, Zn_ADH6, Alcohol dehydrogenases of the MDR family

 Score = 98.1 bits (245), Expect = 7e-23
 Identities = 78/270 (28%), Positives = 116/270 (42%), Gaps = 41/270 (15%)

Query: 84  MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLP 143
           M+A +Y E+G    +    +V  P+   D V+++V A  +   D    QG     D  LP
Sbjct: 1   MRAAVYEEFGEPLEI---REVPDPEPPPDGVVVEVEACGVCRSDWHGWQGH--DPDVTLP 55

Query: 144 TVPGYDVAGVVVKVGTQVKEFKEGDEVYGDIN------EKALEG-----PKQF------- 185
            VPG++ AGVVV+VG  V  ++ GD V                G       Q        
Sbjct: 56  HVPGHEFAGVVVEVGEDVSRWRVGDRVTVPFVLGCGTCPYCRAGDSNVCEHQVQPGFTHP 115

Query: 186 GSLAEYTAVE--ERLLAPKPKNLDFVQAAGLPLAIETAYEGL-ERTGFSAGKSILVLNGS 242
           GS AEY AV   +  L   P ++DFV AAGL     TA+  L  +     G+ + V +G 
Sbjct: 116 GSFAEYVAVPRADVNLVRLPDDVDFVTAAGLGCRFATAFRALVHQARVKPGEWVAV-HGC 174

Query: 243 GGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFEDLPEKF----- 297
           GGVG   + +A    GA  +A       LE  + LGA   ++ ++   ED+         
Sbjct: 175 GGVGLSAVMIAS-ALGARVIAVDIDDDKLELARELGAVATVNASEV--EDVAAAVRDLTG 231

Query: 298 ---DVVYDAIG---QCDRAVKAIKEGGTVV 321
               V  DA+G    C  +V ++++ G  V
Sbjct: 232 GGAHVSVDALGIPETCRNSVASLRKRGRHV 261

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 345

>gnl|CDD|176250 cd08290, ETR, 2-enoyl thioester reductase (ETR)

 Score = 97.3 bits (243), Expect = 1e-22
 Identities = 92/350 (26%), Positives = 142/350 (40%), Gaps = 54/350 (15%)

Query: 84  MKAWLYGEYGGV-DVLKFDEKVTVPQVKE-DQVLIKVVAAALNPVDGKRRQGKF---KAT 138
            KA +Y E+G   +VL+  E   +P     ++VL+K++AA +NP D  + QG +     T
Sbjct: 1   AKALVYTEHGEPKEVLQL-ESYEIPPPGPPNEVLVKMLAAPINPADINQIQGVYPIKPPT 59

Query: 139 DSPLPTVPGYDVAGVVVKVGTQVKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERL 198
               P V G +  G VVKVG+ VK  K GD V        +      G+   +  V    
Sbjct: 60  TPEPPAVGGNEGVGEVVKVGSGVKSLKPGDWV--------IPLRPGLGTWRTHAVVPADD 111

Query: 199 LAPKPKNLDFVQAAGLPLAIETAYEGLERTGFSAGKSILVLNG-SGGVGSLVIQLAKQVF 257
           L   P ++D  QAA L +   TAY  LE          ++ NG +  VG  VIQLAK   
Sbjct: 112 LIKVPNDVDPEQAATLSVNPCTAYRLLEDFVKLQPGDWVIQNGANSAVGQAVIQLAKL-L 170

Query: 258 GASRVAATSSTRNLE----FLKSLGADLAI-------DYTKDNFEDLPEKFDVVY-DAIG 305
           G   +       +LE     LK+LGAD  +           +  +  P     +  + +G
Sbjct: 171 GIKTINVVRDRPDLEELKERLKALGADHVLTEEELRSLLATELLKSAPGGRPKLALNCVG 230

Query: 306 --QCDRAVKAIKEGGTVV---ALTG-AVTPPG----FR------FVVTSNG--------- 340
                   + +  GGT+V    ++G  VT P     F+      F +T            
Sbjct: 231 GKSATELARLLSPGGTMVTYGGMSGQPVTVPTSLLIFKDITLRGFWLTRWLKRANPEEKE 290

Query: 341 EVLKKLNPYLESGKVKPIIDPKGPF-PFSQVVEAFSYIETNKATGKVVIH 389
           ++L++L   +  GK+K     K    P  +  +A +        GK V+ 
Sbjct: 291 DMLEELAELIREGKLKAPPVEKVTDDPLEEFKDALANALKGGGGGKQVLV 340

2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains, at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers, with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 341

>gnl|CDD|176201 cd08239, THR_DH_like, L-threonine dehydrogenase (TDH)-like

 Score = 95.8 bits (239), Expect = 4e-22
 Identities = 92/344 (26%), Positives = 138/344 (40%), Gaps = 63/344 (18%)

Query: 97  VLKFDEKVT-----VPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVA 151
           V   D  V      VP     +VL++V A+ L   D        +A       +PG++ A
Sbjct: 5   VFPGDRTVELREFPVPVPGPGEVLLRVKASGLCGSDLHYYYHGHRAPAYQ-GVIPGHEPA 63

Query: 152 GVVVKVGTQVKEFKEGDEV------------YGD-------INEKALEGPKQFGSLAEYT 192
           GVVV VG  V  F+ GD V                       +++A  G  + G  AEY 
Sbjct: 64  GVVVAVGPGVTHFRVGDRVMVYHYVGCGACRNCRRGWMQLCTSKRAAYGWNRDGGHAEYM 123

Query: 193 AVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLERTGFSAGKSILVLNGSGGVGSLVIQL 252
            V E+ L P P +L F   A L   I TAY  L R G S   ++LV+ G+G VG   + L
Sbjct: 124 LVPEKTLIPLPDDLSFADGALLLCGIGTAYHALRRVGVSGRDTVLVV-GAGPVGLGALML 182

Query: 253 AKQVFGASRVAATS-STRNLEFLKSLGADLAIDYTKDNFEDLPE-----KFDVVYDAIGQ 306
           A+   GA  V     S   LE  K+LGAD  I+  +D+ +++ E       DV  +  G 
Sbjct: 183 AR-ALGAEDVIGVDPSPERLELAKALGADFVINSGQDDVQEIRELTSGAGADVAIECSGN 241

Query: 307 C---DRAVKAIKEGGTV--VALTGAVT---PPGF----RFVVTS----------NGEVLK 344
                 A++A++  G +  V   G +T           R ++ S            E L 
Sbjct: 242 TAARRLALEAVRPWGRLVLVGEGGELTIEVSNDLIRKQRTLIGSWYFSVPDMEECAEFLA 301

Query: 345 KLNPYLESGKVKPIIDPKGPFPFSQVVEAFSYIETNKATGKVVI 388
           +    ++      ++  +  F   Q  EA++       +GKVV 
Sbjct: 302 RHKLEVD-----RLVTHR--FGLDQAPEAYALFA-QGESGKVVF 337

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 339

>gnl|CDD|176195 cd08233, butanediol_DH_like, (2R,3R)-2,3-butanediol dehydrogenase

 Score = 94.1 bits (235), Expect = 2e-21
 Identities = 82/286 (28%), Positives = 118/286 (41%), Gaps = 65/286 (22%)

Query: 84  MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAA-----LN---------PVDGK 129
           MKA  Y  +G  D+ + +E V  P VK  +V IKV         L+         P +G 
Sbjct: 1   MKAARY--HGRKDI-RVEE-VPEPPVKPGEVKIKVAWCGICGSDLHEYLDGPIFIPTEGH 56

Query: 130 RRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKEFKEGDEV------YGDINEKALEGP- 182
                   T    P   G++ +GVVV+VG+ V  FK GD V                G  
Sbjct: 57  P-----HLTGETAPVTLGHEFSGVVVEVGSGVTGFKVGDRVVVEPTIKCGTCGACKRGLY 111

Query: 183 ---KQFGS---------LAEYTAVEERLLAPKPKNLDFVQAAGL-PLAIETAYEGLERTG 229
                 G           AEY  V    +   P N+   +AA + PLA+  A+  + R+G
Sbjct: 112 NLCDSLGFIGLGGGGGGFAEYVVVPAYHVHKLPDNVPLEEAALVEPLAV--AWHAVRRSG 169

Query: 230 FSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAAT--SSTRNLEFLKSLGADLAIDYTK 287
           F  G + LVL G+G +G L I   K   GAS++  +  S  R  E  + LGA + +D T+
Sbjct: 170 FKPGDTALVL-GAGPIGLLTILALK-AAGASKIIVSEPSEAR-RELAEELGATIVLDPTE 226

Query: 288 DNFEDLPEK---------FDVVYDAIG---QCDRAVKAIKEGGTVV 321
               D+  +          DV +D  G     D A+ A++  GT V
Sbjct: 227 ---VDVVAEVRKLTGGGGVDVSFDCAGVQATLDTAIDALRPRGTAV 269

(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Length = 351

>gnl|CDD|176224 cd08263, Zn_ADH10, Alcohol dehydrogenases of the MDR family

 Score = 93.6 bits (233), Expect = 3e-21
 Identities = 101/377 (26%), Positives = 153/377 (40%), Gaps = 83/377 (22%)

Query: 84  MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLP 143
           MKA +         +   E++ VP+ KE ++LI+V A  +   D    +G+      P P
Sbjct: 1   MKAAVLKGPNPPLTI---EEIPVPRPKEGEILIRVAACGVCHSDLHVLKGE---LPFPPP 54

Query: 144 TVPGYDVAGVVVKVGTQVK---EFKEGDEVYG-----------------DINEKALE--- 180
            V G++++G VV+VG  V+       GD V G                 ++ E       
Sbjct: 55  FVLGHEISGEVVEVGPNVENPYGLSVGDRVVGSFIMPCGKCRYCARGKENLCEDFFAYNR 114

Query: 181 -----------------GPKQFGS---LAEYTAVEERLLAPKPKNLDFVQAAGLPLAIET 220
                            GP    S   LAEY  V    LAP P++LD+ ++A L  A  T
Sbjct: 115 LKGTLYDGTTRLFRLDGGPVYMYSMGGLAEYAVVPATALAPLPESLDYTESAVLGCAGFT 174

Query: 221 AYEGLERTG-FSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRN-LEFLKSLG 278
           AY  L+       G+++ V+ G GGVGS  IQLAK  FGAS + A       L   K LG
Sbjct: 175 AYGALKHAADVRPGETVAVI-GVGGVGSSAIQLAK-AFGASPIIAVDVRDEKLAKAKELG 232

Query: 279 ADLAIDYTKDNFEDLPEKF---------DVVYDAIGQ---CDRAVKAIKEGGTVVAL--- 323
           A   ++  K   ED              DVV +A+G+      A+  +++GG  V +   
Sbjct: 233 ATHTVNAAK---EDAVAAIREITGGRGVDVVVEALGKPETFKLALDVVRDGGRAVVVGLA 289

Query: 324 -TGAVTP-PGFRFV------VTSNG----EVLKKLNPYLESGKVKPIIDPKGPFPFSQVV 371
             GA    P  R V      + S G    + L +L     SGK+ P       +   ++ 
Sbjct: 290 PGGATAEIPITRLVRRGIKIIGSYGARPRQDLPELVGLAASGKLDPEALVTHKYKLEEIN 349

Query: 372 EAFSYIETNKATGKVVI 388
           EA+  +      G+ ++
Sbjct: 350 EAYENLRKGLIHGRAIV 366

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 367

>gnl|CDD|222256 pfam13602, ADH_zinc_N_2, Zinc-binding dehydrogenase

 Score = 87.0 bits (216), Expect = 7e-21
 Identities = 47/131 (35%), Positives = 67/131 (51%), Gaps = 21/131 (16%)

Query: 277 LGADLAIDYTKDNFEDL--PEKFDVVYDAIG--QCDRAVKAIKEGGTVVALTGAVTPP-- 330
           LGAD  IDYT ++FE+    E  DVV D +G     RA+ A+K GG +V++ G       
Sbjct: 1   LGADEVIDYTTEDFEEATAGEGVDVVLDTVGGETLLRALLALKPGGRLVSIGGPDLLLSV 60

Query: 331 ----------GFRFVVTSNGEV---LKKLNPYLESGKVKPIIDPKGPFPFSQVVEAFSYI 377
                     G      S GE    L +L   +E+GK++P+ID    FP  +  EA  Y+
Sbjct: 61  AAKAGGRGVRGVFLFPVSPGEAGADLAELAELVEAGKLRPVIDRV--FPLEEAAEAHRYL 118

Query: 378 ETNKATGKVVI 388
           E+ +A GKVV+
Sbjct: 119 ESGRARGKVVL 129

Length = 129

>gnl|CDD|176219 cd08258, Zn_ADH4, Alcohol dehydrogenases of the MDR family

 Score = 90.8 bits (226), Expect = 1e-20
 Identities = 80/294 (27%), Positives = 130/294 (44%), Gaps = 46/294 (15%)

Query: 84  MKAWL-YG-EYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSP 141
           MKA +  G   G V++ +  E    P+    +VLIKV AA +   D    +G +      
Sbjct: 1   MKALVKTGPGPGNVELREVPE----PEPGPGEVLIKVAAAGICGSDLHIYKGDYD--PVE 54

Query: 142 LPTVPGYDVAGVVVKVGTQVKEFKEGDEVY----------------GDIN---EKALEGP 182
            P V G++ +G +V+VG  V+ +K GD V                 GD N    +   G 
Sbjct: 55  TPVVLGHEFSGTIVEVGPDVEGWKVGDRVVSETTFSTCGRCPYCRRGDYNLCPHRKGIGT 114

Query: 183 KQFGSLAEYTAVEERLLAPKPKNLDFVQAAGL-PLAIETAYEGLERTGFSAGKSILVLNG 241
           +  G  AEY  V E  L   P+NL    AA   PLA+   +   ER+G   G +++V  G
Sbjct: 115 QADGGFAEYVLVPEESLHELPENLSLEAAALTEPLAV-AVHAVAERSGIRPGDTVVVF-G 172

Query: 242 SGGVGSLVIQLAKQVFGASRVAATSSTRN---LEFLKSLGADLAIDYTKDNFEDLP---- 294
            G +G L  Q+AK + GA  V    + ++   L+  K LGAD A++  +++  +L     
Sbjct: 173 PGPIGLLAAQVAK-LQGA-TVVVVGTEKDEVRLDVAKELGAD-AVNGGEEDLAELVNEIT 229

Query: 295 --EKFDVVYDAIGQC---DRAVKAIKEGGTVVAL-TGAVTPPGFRFVVTSNGEV 342
             +  DVV +  G     ++A++ +++GG +V +                  E+
Sbjct: 230 DGDGADVVIECSGAVPALEQALELLRKGGRIVQVGIFGPLAASIDVERIIQKEL 283

This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 306

>gnl|CDD|176184 cd05281, TDH, Threonine dehydrogenase

 Score = 88.8 bits (221), Expect = 1e-19
 Identities = 99/348 (28%), Positives = 143/348 (41%), Gaps = 81/348 (23%)

Query: 102 EKVTVPQVKEDQVLIKVVAAALNPVD------GKRRQGKFKATDSPLPTVPGYDVAGVVV 155
            +V VP+    +VLIKV+AA++   D       +  Q + K      P + G++ AG VV
Sbjct: 16  VEVPVPKPGPGEVLIKVLAASICGTDVHIYEWDEWAQSRIKP-----PLIFGHEFAGEVV 70

Query: 156 KVGTQVKEFKEGDEVYGDI-------------------NEKALEGPKQFGSLAEYTAVEE 196
           +VG  V   K GD V  +                    N K L G    G  AEY  V E
Sbjct: 71  EVGEGVTRVKVGDYVSAETHIVCGKCYQCRTGNYHVCQNTKIL-GVDTDGCFAEYVVVPE 129

Query: 197 RLLAPKPKNLDFVQAAGL-PL--AIETAYEGLERTGFSAGKSILVLNGSGGVGSLVIQLA 253
             L    K++    A+   PL  A+ T        G  +GKS+L+  G G +G + I +A
Sbjct: 130 ENLWKNDKDIPPEIASIQEPLGNAVHTVL-----AGDVSGKSVLIT-GCGPIGLMAIAVA 183

Query: 254 KQVFGASRVAATS-STRNLEFLKSLGADLAIDYTKDNFEDLPEKF-----DVVYD----- 302
           K   GAS V A+  +   LE  K +GAD+ I+  +++  ++         DVV +     
Sbjct: 184 K-AAGASLVIASDPNPYRLELAKKMGADVVINPREEDVVEVKSVTDGTGVDVVLEMSGNP 242

Query: 303 -AIGQCDRAVKAIKEGGTVVALTGAVTPPGFRFVVTSNGEVLKKLNPY------------ 349
            AI Q    +KA+  GG V  L     P        +N  + K L               
Sbjct: 243 KAIEQ---GLKALTPGGRVSILGLPPGPVDIDL---NNLVIFKGLTVQGITGRKMFETWY 296

Query: 350 -----LESGKV--KPIIDPKGPFPFSQVVEAFSYIETNKATGKVVIHP 390
                L+SGKV   P+I  K   P     EAF  +  +   GKVV++P
Sbjct: 297 QVSALLKSGKVDLSPVITHK--LPLEDFEEAFELMR-SGKCGKVVLYP 341

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Length = 341

>gnl|CDD|176230 cd08269, Zn_ADH9, Alcohol dehydrogenases of the MDR family

 Score = 88.2 bits (219), Expect = 1e-19
 Identities = 67/235 (28%), Positives = 94/235 (40%), Gaps = 31/235 (13%)

Query: 102 EKVTVPQVKEDQVLIKVVAAALNPVD-GKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQ 160
           E+   P     QVL++V    +   D     QG+        P  PG++  G VV +G  
Sbjct: 10  EEHPRPTPGPGQVLVRVEGCGVCGSDLPAFNQGRPWFVYPAEPGGPGHEGWGRVVALGPG 69

Query: 161 VKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIET 220
           V+    GD V G             G+ AEY   +     P P  LD     G PL    
Sbjct: 70  VRGLAVGDRVAG----------LSGGAFAEYDLADADHAVPLPSLLDGQAFPGEPLG--C 117

Query: 221 AYEGLERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRN-LEFLKSLGA 279
           A     R    AGK++ V+ G+G +G L +QLA    GA RV A       L   + LGA
Sbjct: 118 ALNVFRRGWIRAGKTVAVI-GAGFIGLLFLQLAAAA-GARRVIAIDRRPARLALARELGA 175

Query: 280 DLAIDYTKDNFEDLPEK---------FDVVYDAIGQ---CDRAVKAIKEGGTVVA 322
              +    D+ E + E+          DVV +A+G     D A + + E G +V 
Sbjct: 176 TEVVT---DDSEAIVERVRELTGGAGADVVIEAVGHQWPLDLAGELVAERGRLVI 227

The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 312

>gnl|CDD|223991 COG1063, Tdh, Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

 Score = 88.6 bits (220), Expect = 1e-19
 Identities = 96/364 (26%), Positives = 130/364 (35%), Gaps = 76/364 (20%)

Query: 84  MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAA-----LNPVDGKRRQGKFKAT 138
             A +Y   G V +    E+   P      VLI+V A       L+   G          
Sbjct: 2   KAAVVYVGGGDVRL----EEPPPPIPGPGDVLIRVTATGICGSDLHIYRGGEPFVPPG-- 55

Query: 139 DSPLPTVPGYDVAGVVVKVGTQVKEFKEGDEVY-----------------------GDIN 175
                 + G++  G VV+VG  V+ FK GD V                            
Sbjct: 56  ----DIILGHEFVGEVVEVG-VVRGFKVGDRVVVEPNIPCGHCRYCRAGEYNLCENPGFY 110

Query: 176 EKALEGPKQFGSLAEYTAV-EERLLAPKPKNLDFVQAAGL--PLAIETAYEGLERTGFSA 232
             A  G    G  AEY  V  +  LA  P  +D   AA L  PLA  TAY G        
Sbjct: 111 GYAGLGGGIDGGFAEYVRVPADFNLAKLPDGIDEEAAA-LTEPLA--TAYHGHAERAAVR 167

Query: 233 GKSILVLNGSGGVGSLVIQLAKQVFGASRVAAT-SSTRNLEFLKSLGADLAIDYTKDNFE 291
               +V+ G+G +G L I LAK + GAS V     S   LE  K  G    +    ++  
Sbjct: 168 PGGTVVVVGAGPIGLLAIALAK-LLGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDA 226

Query: 292 DL-------PEKFDVVYDAIG---QCDRAVKAIKEGGTV--VALTGAVTPPG-FRFVVTS 338
                        DVV +A+G     D+A++A++ GGTV  V + G    P     VV+ 
Sbjct: 227 GAEILELTGGRGADVVIEAVGSPPALDQALEALRPGGTVVVVGVYGGEDIPLPAGLVVSK 286

Query: 339 NGEVLKKLNPY-----------LESGKVKP--IIDPKGPFPFSQVVEAFSYIETNKAT-G 384
              +   L P            L SGK+ P  +I      P     EA+      K    
Sbjct: 287 ELTLRGSLRPSGREDFERALDLLASGKIDPEKLITH--RLPLDDAAEAYELFADRKEEAI 344

Query: 385 KVVI 388
           KVV+
Sbjct: 345 KVVL 348

Length = 350

>gnl|CDD|176190 cd05288, PGDH, Prostaglandin dehydrogenases

 Score = 88.3 bits (220), Expect = 2e-19
 Identities = 89/336 (26%), Positives = 140/336 (41%), Gaps = 78/336 (23%)

Query: 102 EKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVP------GYDVAGVVV 155
            +V +P++K+ +VL++ +  +++P      +G      S  P V       G  V G VV
Sbjct: 23  VEVPLPELKDGEVLVRTLYLSVDPY----MRGWMSDAKSYSPPVQLGEPMRGGGV-GEVV 77

Query: 156 KVGTQVKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLP 215
           +  ++  +FK GD V G            F    EY  V+      K   LD      L 
Sbjct: 78  E--SRSPDFKVGDLVSG------------FLGWQEYAVVDGASGLRK---LDPSLGLPLS 120

Query: 216 LAIE-------TAYEGLERTG-FSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSS 267
             +        TAY GL   G    G++++V   +G VGS+V Q+AK + GA  V    S
Sbjct: 121 AYLGVLGMTGLTAYFGLTEIGKPKPGETVVVSAAAGAVGSVVGQIAKLL-GARVVGIAGS 179

Query: 268 TRNLEFLKS-LGADLAIDYTKDNFED-----LPEKFDVVYDAIG--QCDRAVKAIKEGGT 319
                +L   LG D AI+Y   +  +      P+  DV +D +G    D A+  + +GG 
Sbjct: 180 DEKCRWLVEELGFDAAINYKTPDLAEALKEAAPDGIDVYFDNVGGEILDAALTLLNKGGR 239

Query: 320 VVALTGAV------TPPGFR--------------FVVTSN----GEVLKKLNPYLESGKV 355
           +    GA+       PPG +              F+V+       E L +L  +L  GK+
Sbjct: 240 IALC-GAISQYNATEPPGPKNLGNIITKRLTMQGFIVSDYADRFPEALAELAKWLAEGKL 298

Query: 356 KP---IIDPKGPFPFSQVVEAFSYIETNKATGKVVI 388
           K    +++  G        EAF  + T K TGK+V+
Sbjct: 299 KYREDVVE--G---LENAPEAFLGLFTGKNTGKLVV 329

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. Length = 329

>gnl|CDD|176194 cd08232, idonate-5-DH, L-idonate 5-dehydrogenase

 Score = 85.4 bits (212), Expect = 2e-18
 Identities = 89/337 (26%), Positives = 135/337 (40%), Gaps = 61/337 (18%)

Query: 102 EKVTVPQVKEDQVLIKVVAAALNPVD-GKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQ 160
           E+   P+    +V ++V A  +   D    + G F       P V G++V+GVV  VG  
Sbjct: 12  EERPAPEPGPGEVRVRVAAGGICGSDLHYYQHGGFGTVRLREPMVLGHEVSGVVEAVGPG 71

Query: 161 VKEFKEGDEV------YGDINEKALEG-----------------PKQFGSLAEYTAVEER 197
           V     G  V           +    G                 P   G   EY  V+  
Sbjct: 72  VTGLAPGQRVAVNPSRPCGTCDYCRAGRPNLCLNMRFLGSAMRFPHVQGGFREYLVVDAS 131

Query: 198 LLAPKPKNLDFVQAA-GLPLAIETAYEGLERTGFSAGKSILVLNGSGGVGSLVIQLAKQV 256
              P P  L   +AA   PLA+  A   + R G  AGK +LV  G+G +G+LV+  A++ 
Sbjct: 132 QCVPLPDGLSLRRAALAEPLAV--ALHAVNRAGDLAGKRVLV-TGAGPIGALVVAAARRA 188

Query: 257 FGASRVAATS-STRNLEFLKSLGADLAIDYTKDN---FEDLPEKFDVVYDAIGQ---CDR 309
            GA+ + AT  +   L   +++GAD  ++  +D    +      FDVV++A G       
Sbjct: 189 -GAAEIVATDLADAPLAVARAMGADETVNLARDPLAAYAADKGDFDVVFEASGAPAALAS 247

Query: 310 AVKAIKEGGTVVA---LTGAVTPPG-------------FRFVVTSNGEVLKKLNPYLESG 353
           A++ ++ GGTVV    L G V  P              FRF       V       L +G
Sbjct: 248 ALRVVRPGGTVVQVGMLGGPVPLPLNALVAKELDLRGSFRFDDEFAEAV-----RLLAAG 302

Query: 354 K--VKPIIDPKGPFPFSQVVEAFSYIETNKATGKVVI 388
           +  V+P+I     FP  +  EAF+       + KV +
Sbjct: 303 RIDVRPLI--TAVFPLEEAAEAFALAADRTRSVKVQL 337

L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 339

>gnl|CDD|176248 cd08288, MDR_yhdh, Yhdh putative quinone oxidoreductases

 Score = 83.4 bits (207), Expect = 6e-18
 Identities = 72/258 (27%), Positives = 108/258 (41%), Gaps = 37/258 (14%)

Query: 84  MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLP 143
            KA +  +  G    +  E +    + E  V ++V  + LN  DG    GK     +  P
Sbjct: 1   FKALVLEKDDGGTSAELRE-LDESDLPEGDVTVEVHYSTLNYKDGLAITGKGGIVRT-FP 58

Query: 144 TVPGYDVAGVVVKVGTQVKEFKEGDEV----YGDINEKALEGPKQFGSLAEYTAVEERLL 199
            VPG D+AG VV+  +    FK GD V    +G        G + +G  A+   V+   L
Sbjct: 59  LVPGIDLAGTVVE--SSSPRFKPGDRVVLTGWG-------VGERHWGGYAQRARVKADWL 109

Query: 200 APKPKNLDFVQAAGLPLAIETA-------YEGLERTGFSAGKS-ILVLNGSGGVGSLVIQ 251
            P P+ L   QA     AI TA          LE  G + G   +LV   +GGVGS+ + 
Sbjct: 110 VPLPEGLSARQAM----AIGTAGFTAMLCVMALEDHGVTPGDGPVLVTGAAGGVGSVAVA 165

Query: 252 LAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFEDLP-----EKFDVVYDAIGQ 306
           L  ++ G   VA+T      ++L+SLGA   ID  +    +       E++    D +G 
Sbjct: 166 LLARL-GYEVVASTGRPEEADYLRSLGASEIID--RAELSEPGRPLQKERWAGAVDTVGG 222

Query: 307 --CDRAVKAIKEGGTVVA 322
                 +   + GG V A
Sbjct: 223 HTLANVLAQTRYGGAVAA 240

Yhdh putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 324

>gnl|CDD|234026 TIGR02823, oxido_YhdH, putative quinone oxidoreductase, YhdH/YhfP family

 Score = 82.2 bits (204), Expect = 1e-17
 Identities = 73/236 (30%), Positives = 103/236 (43%), Gaps = 28/236 (11%)

Query: 102 EKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQV 161
           E + +  + E  VLIKV  ++LN  D     GK     S  P +PG D AG VV   ++ 
Sbjct: 17  ETLDLSDLPEGDVLIKVAYSSLNYKDALAITGKGGVVRS-YPMIPGIDAAGTVVS--SED 73

Query: 162 KEFKEGDEV----YGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLA 217
             F+EGDEV    YG        G    G  ++Y  V    L P P+ L   +A  L  A
Sbjct: 74  PRFREGDEVIVTGYG-------LGVSHDGGYSQYARVPADWLVPLPEGLSLREAMALGTA 126

Query: 218 IETA---YEGLERTGFSAG-KSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEF 273
             TA      LER G +     +LV   +GGVGSL + +  +  G   VA+T      ++
Sbjct: 127 GFTAALSVMALERNGLTPEDGPVLVTGATGGVGSLAVAILSK-LGYEVVASTGKAEEEDY 185

Query: 274 LKSLGADLAIDYTKDNFED-----LPEKFDVVYDAIG--QCDRAVKAIKEGGTVVA 322
           LK LGA   ID  +++          E++    D +G       +  +K GG V A
Sbjct: 186 LKELGASEVID--REDLSPPGKPLEKERWAGAVDTVGGHTLANVLAQLKYGGAVAA 239

This model represents a subfamily of pfam00107 as defined by Pfam, a superfamily in which some members are zinc-binding medium-chain alcohol dehydrogenases while others are quinone oxidoreductases with no bound zinc. This subfamily includes proteins studied crystallographically for insight into function: YhdH from Escherichia coli and YhfP from Bacillus subtilis. Members bind NADPH or NAD, but not zinc [Unknown function, Enzymes of unknown specificity]. Length = 323

>gnl|CDD|176256 cd08296, CAD_like, Cinnamyl alcohol dehydrogenases (CAD)

 Score = 79.6 bits (197), Expect = 1e-16
 Identities = 89/350 (25%), Positives = 135/350 (38%), Gaps = 63/350 (18%)

Query: 84  MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLP 143
            KA    E GG   L+  E+  VP     +VLIKV A  +   D   ++G         P
Sbjct: 1   YKAVQVTEPGGP--LELVER-DVPLPGPGEVLIKVEACGVCHSDAFVKEGAMPGL--SYP 55

Query: 144 TVPGYDVAGVVVKVGTQVKEFKEGDEV----------------YGDI---NEKALEGPKQ 184
            VPG++V G +  VG  V  +K GD V                 GD        + G  +
Sbjct: 56  RVPGHEVVGRIDAVGEGVSRWKVGDRVGVGWHGGHCGTCDACRRGDFVHCENGKVTGVTR 115

Query: 185 FGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLERTGFSAGKSILVLNGSGG 244
            G  AEY       LA  P +LD  +AA L  A  T +  L  +G   G  + V  G GG
Sbjct: 116 DGGYAEYMLAPAEALARIPDDLDAAEAAPLLCAGVTTFNALRNSGAKPGDLVAVQ-GIGG 174

Query: 245 VGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFEDLPEKFDVVYDAI 304
           +G L +Q A +  G   VA +  +   +  + LGA   ID +K   ED+ E        +
Sbjct: 175 LGHLAVQYAAK-MGFRTVAISRGSDKADLARKLGAHHYIDTSK---EDVAEAL----QEL 226

Query: 305 GQCDRAVKAIKEGGTVVALTGAVTPPGFRFVVTSNGEVLKKLNPYLESGK---------- 354
           G     +        + AL G + P G   ++ + GE +  ++P                
Sbjct: 227 GGAKLILATAPNAKAISALVGGLAPRGKLLILGAAGEPV-AVSPLQLIMGRKSIHGWPSG 285

Query: 355 ----------------VKPIIDPKGPFPFSQVVEAFSYIETNKATGKVVI 388
                           V+P+++    FP  +  EA+  + + KA  +VV+
Sbjct: 286 TALDSEDTLKFSALHGVRPMVE---TFPLEKANEAYDRMMSGKARFRVVL 332

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADHs), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 333

>gnl|CDD|176181 cd05278, FDH_like, Formaldehyde dehydrogenases

 Score = 80.0 bits (198), Expect = 1e-16
 Identities = 92/363 (25%), Positives = 148/363 (40%), Gaps = 72/363 (19%)

Query: 84  MKAWLYGEYGGVDVLKFDEKVTVPQVK-EDQVLIKVVAAA-----LNPVDGKRRQGKFKA 137
           MKA +Y   G + +    E+V  P+++     +++V A +     L+   G         
Sbjct: 1   MKALVYLGPGKIGL----EEVPDPKIQGPHDAIVRVTATSICGSDLHIYRGG-------V 49

Query: 138 TDSPLPTVPGYDVAGVVVKVGTQVKEFKEGDEV-----------------YGDINEKALE 180
             +    + G++  G VV+VG+ VK  K GD V                 Y    E  L 
Sbjct: 50  PGAKHGMILGHEFVGEVVEVGSDVKRLKPGDRVSVPCITFCGRCRFCRRGYHAHCENGLW 109

Query: 181 GPKQF----GSLAEYTAVEE--RLLAPKPKNLDFVQAAGLPLAIETAYEGLERTGFSAGK 234
           G K      G  AEY  V      LA  P  L    A  L   + T + G E  G   G 
Sbjct: 110 GWKLGNRIDGGQAEYVRVPYADMNLAKIPDGLPDEDALMLSDILPTGFHGAELAGIKPGS 169

Query: 235 SILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRN-LEFLKSLGADLAIDYTKDNFEDL 293
           ++ V+ G+G VG   +  A+ + GA+R+ A  S    L+  K  GA   I+    +  + 
Sbjct: 170 TVAVI-GAGPVGLCAVAGAR-LLGAARIIAVDSNPERLDLAKEAGATDIINPKNGDIVEQ 227

Query: 294 PEK------FDVVYDAIG---QCDRAVKAIKEGGTV--VALTGA---VTPPG-------- 331
             +       D V +A+G     ++AVK ++ GGT+  V + G    +   G        
Sbjct: 228 ILELTGGRGVDCVIEAVGFEETFEQAVKVVRPGGTIANVGVYGKPDPLPLLGEWFGKNLT 287

Query: 332 FRFVVTSNGEVLKKLNPYLESGKVKP--IIDPKGPFPFSQVVEAFSYIETNKATG--KVV 387
           F+  +      + +L   +E GK+ P  +I  +  FP   +++A+   + NK  G  KVV
Sbjct: 288 FKTGLVPVRARMPELLDLIEEGKIDPSKLITHR--FPLDDILKAYRLFD-NKPDGCIKVV 344

Query: 388 IHP 390
           I P
Sbjct: 345 IRP 347

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 347

>gnl|CDD|176240 cd08279, Zn_ADH_class_III, Class III alcohol dehydrogenase

 Score = 79.1 bits (196), Expect = 2e-16
 Identities = 70/278 (25%), Positives = 112/278 (40%), Gaps = 57/278 (20%)

Query: 102 EKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQV 161
           E+V +      +VL+++ AA L   D     G      +PLP V G++ AGVV +VG  V
Sbjct: 16  EEVELDDPGPGEVLVRIAAAGLCHSDLHVVTGDL---PAPLPAVLGHEGAGVVEEVGPGV 72

Query: 162 KEFKEGDEV-------------------------YGDINEKALEGPKQF----------- 185
              K GD V                          G +  +  +G ++F           
Sbjct: 73  TGVKPGDHVVLSWIPACGTCRYCSRGQPNLCDLGAGILGGQLPDGTRRFTADGEPVGAMC 132

Query: 186 --GSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEG--LERTGFSAGKSILVLNG 241
             G+ AEYT V E  +     ++   +AA L   + T   G  +       G ++ V+ G
Sbjct: 133 GLGTFAEYTVVPEASVVKIDDDIPLDRAALLGCGVTTGV-GAVVNTARVRPGDTVAVI-G 190

Query: 242 SGGVGSLVIQLAKQVFGASR-VAATSSTRNLEFLKSLGADLAIDYTKDNFEDL------P 294
            GGVG   IQ A+   GASR +A       LE  +  GA   ++ ++D+  +        
Sbjct: 191 CGGVGLNAIQGARIA-GASRIIAVDPVPEKLELARRFGATHTVNASEDDAVEAVRDLTDG 249

Query: 295 EKFDVVYDAIG---QCDRAVKAIKEGGTVVALTGAVTP 329
              D  ++A+G      +A+   ++GGT V + G   P
Sbjct: 250 RGADYAFEAVGRAATIRQALAMTRKGGTAV-VVGMGPP 286

Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 363

>gnl|CDD|176182 cd05279, Zn_ADH1, Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases

 Score = 79.0 bits (195), Expect = 3e-16
 Identities = 74/276 (26%), Positives = 101/276 (36%), Gaps = 56/276 (20%)

Query: 102 EKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQV 161
           E++ V   K  +V IKVVA  +   D     GK     +PLP + G++ AG+V  +G  V
Sbjct: 16  EEIEVAPPKAGEVRIKVVATGVCHTDLHVIDGKLP---TPLPVILGHEGAGIVESIGPGV 72

Query: 162 KEFKEGDEVY---------------GDIN-----------EKALEGPKQF---------- 185
              K GD+V                   N               +G  +F          
Sbjct: 73  TTLKPGDKVIPLFGPQCGKCKQCLNPRPNLCSKSRGTNGRGLMSDGTSRFTCKGKPIHHF 132

Query: 186 ---GSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLERT-GFSAGKSILVLNG 241
               + AEYT V E  LA    +    +   +     T Y     T   + G +  V  G
Sbjct: 133 LGTSTFAEYTVVSEISLAKIDPDAPLEKVCLIGCGFSTGYGAAVNTAKVTPGSTCAVF-G 191

Query: 242 SGGVGSLVIQLAKQVFGASRV-AATSSTRNLEFLKSLGADLAI---DYTKDNFEDLPEK- 296
            GGVG  VI   K   GASR+ A   +    E  K LGA   I   D  K   E L E  
Sbjct: 192 LGGVGLSVIMGCK-AAGASRIIAVDINKDKFEKAKQLGATECINPRDQDKPIVEVLTEMT 250

Query: 297 ---FDVVYDAIGQCD---RAVKAIKEGGTVVALTGA 326
               D  ++ IG  D   +A+ A + GG    + G 
Sbjct: 251 DGGVDYAFEVIGSADTLKQALDATRLGGGTSVVVGV 286

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the substrate binding pocket and therefore in substrate specificity. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine (His-51), the ribose of NAD, a serine (Ser-48), then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 365

>gnl|CDD|225041 COG2130, COG2130, Putative NADP-dependent oxidoreductases [General function prediction only]

 Score = 75.8 bits (187), Expect = 3e-15
 Identities = 89/333 (26%), Positives = 136/333 (40%), Gaps = 72/333 (21%)

Query: 102 EKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVP--GYDVAGVVVKV-G 158
           E+V VP+  E QVL++ +  +L+P    R         S  P V      V G V KV  
Sbjct: 30  EEVDVPEPGEGQVLLRTLYLSLDPYMRGRMS----DAPSYAPPVELGEVMVGGTVAKVVA 85

Query: 159 TQVKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLA---PKPKNL-DFVQAAGL 214
           +    F+ GD V G                 EY   +   L    P P  L  ++   G+
Sbjct: 86  SNHPGFQPGDIVVG------------VSGWQEYAISDGEGLRKLDPSPAPLSAYLGVLGM 133

Query: 215 PLAIETAYEGLERTG-FSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAAT-SSTRNLE 272
           P    TAY GL   G   AG++++V   +G VGS+V Q+AK      RV          +
Sbjct: 134 PGL--TAYFGLLDIGQPKAGETVVVSAAAGAVGSVVGQIAK--LKGCRVVGIAGGAEKCD 189

Query: 273 FLKS-LGADLAIDYTKDNF-----EDLPEKFDVVYDAIGQ--CDRAVKAIKEGGTVVALT 324
           FL   LG D  IDY  ++F     E  P+  DV ++ +G    D  +  +     +  + 
Sbjct: 190 FLTEELGFDAGIDYKAEDFAQALKEACPKGIDVYFENVGGEVLDAVLPLLNLFARIP-VC 248

Query: 325 GAVT-------PPGFR--------------FVVTSN-----GEVLKKLNPYLESGKVK-- 356
           GA++       PPG R              F+V S+      E L++L  +++ GK++  
Sbjct: 249 GAISQYNAPELPPGPRRLPLLMAKRLRVQGFIVASDYDQRFPEALRELGGWVKEGKIQYR 308

Query: 357 -PIIDPKGPFPFSQVVEAFSYIETNKATGKVVI 388
             I+D           EAF  + + K  GK+V+
Sbjct: 309 ETIVD-----GLENAPEAFIGLLSGKNFGKLVV 336

Length = 340

>gnl|CDD|176244 cd08284, FDH_like_2, Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2

 Score = 75.4 bits (186), Expect = 4e-15
 Identities = 103/365 (28%), Positives = 147/365 (40%), Gaps = 79/365 (21%)

Query: 84  MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQ-VLIKVVAAALNPVDGKRRQGKFKATDSPL 142
           MKA ++   G V V    E+V +PQ+++    ++KV AAA+   D    +G      S  
Sbjct: 1   MKAVVFKGPGDVRV----EEVPIPQIQDPTDAIVKVTAAAICGSDLHIYRGHIP---STP 53

Query: 143 PTVPGYDVAGVVVKVGTQVKEFKEGDEVY---------------GDI---NEKALEGPKQ 184
             V G++  G VV+VG +V+  K GD V                G      +  L G   
Sbjct: 54  GFVLGHEFVGEVVEVGPEVRTLKVGDRVVSPFTIACGECFYCRRGQSGRCAKGGLFGYAG 113

Query: 185 FGSL----AEYTAV--EERLLAPKPKNLDFVQAAGLPLA--IETAYEGLERTGFSAGKSI 236
             +L    AEY  V   +  L   P  L     A L L   + T Y G +R     G ++
Sbjct: 114 SPNLDGAQAEYVRVPFADGTLLKLPDGL--SDEAALLLGDILPTGYFGAKRAQVRPGDTV 171

Query: 237 LVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRN-LEFLKSLGADLAIDYTKDNFEDLPE 295
            V+ G G VG L   L+ QV GA+RV A       LE   +LGA   I     NFED   
Sbjct: 172 AVI-GCGPVG-LCAVLSAQVLGAARVFAVDPVPERLERAAALGA-EPI-----NFEDAEP 223

Query: 296 K-----------FDVVYDAIGQ---CDRAVKAIKEGGTVVALTGAVTPPGF--------- 332
                        DVV +A+G     D A   ++ GG + ++ G  T   F         
Sbjct: 224 VERVREATEGRGADVVLEAVGGAAALDLAFDLVRPGGVISSV-GVHTAEEFPFPGLDAYN 282

Query: 333 -----RFVVTSNGEVLKKLNPYLESGKVKP--IIDPKGPFPFSQVVEAFSYIETNKATGK 385
                RF       +  +L P LESG++    +ID +   P  +  EA+   +  K   K
Sbjct: 283 KNLTLRFGRCPVRSLFPELLPLLESGRLDLEFLIDHRM--PLEEAPEAYRLFDKRKV-LK 339

Query: 386 VVIHP 390
           VV+ P
Sbjct: 340 VVLDP 344

Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 344

>gnl|CDD|180054 PRK05396, tdh, L-threonine 3-dehydrogenase; Validated

 Score = 74.5 bits (184), Expect = 8e-15
 Identities = 90/350 (25%), Positives = 142/350 (40%), Gaps = 92/350 (26%)

Query: 102 EKVTVPQVKEDQVLIKVVAAALNPVD---------GKRRQGKFKATDSPLPTVPGYDVAG 152
             V VP+   + VLIKV   A+   D          ++          P+P V G++  G
Sbjct: 16  TDVPVPEPGPNDVLIKVKKTAICGTDVHIYNWDEWAQKT--------IPVPMVVGHEFVG 67

Query: 153 VVVKVGTQVKEFKEGDEVYG-------------------DINEKALEGPKQFGSLAEYTA 193
            VV+VG++V  FK GD V G                     N K + G  + G+ AEY  
Sbjct: 68  EVVEVGSEVTGFKVGDRVSGEGHIVCGHCRNCRAGRRHLCRNTKGV-GVNRPGAFAEYLV 126

Query: 194 VEERLLAPKPKNLDFVQAAGL-PL--AIETAYEG-LERTGFSAGKSILVLNGSGGVGSLV 249
           +    +   P ++    AA   P   A+ TA    L       G+ +L+  G+G +G + 
Sbjct: 127 IPAFNVWKIPDDIPDDLAAIFDPFGNAVHTALSFDL------VGEDVLI-TGAGPIGIMA 179

Query: 250 IQLAKQVFGASRVAAT--SSTRNLEFLKSLGADLAIDYTKDNFED------LPEKFDVVY 301
             +AK V GA  V  T  +  R LE  + +GA  A++  K++  D      + E FDV  
Sbjct: 180 AAVAKHV-GARHVVITDVNEYR-LELARKMGATRAVNVAKEDLRDVMAELGMTEGFDVGL 237

Query: 302 ------DAIGQCDRAVKAIKEGGTVVALTGAVTPPG-----FRFVVTSNGEVLK------ 344
                  A  Q    +  +  GG  +A+ G   PPG     +  V+   G  +K      
Sbjct: 238 EMSGAPSAFRQ---MLDNMNHGGR-IAMLG--IPPGDMAIDWNKVIF-KGLTIKGIYGRE 290

Query: 345 ------KLNPYLESGK-VKPIIDPKGPFPFSQVVEAFSYIETNKATGKVV 387
                 K++  L+SG  + PII  +  FP     + F  + + ++ GKV+
Sbjct: 291 MFETWYKMSALLQSGLDLSPIITHR--FPIDDFQKGFEAMRSGQS-GKVI 337

Length = 341

>gnl|CDD|176249 cd08289, MDR_yhfp_like, Yhfp putative quinone oxidoreductases

 Score = 73.9 bits (182), Expect = 1e-14
 Identities = 58/185 (31%), Positives = 85/185 (45%), Gaps = 15/185 (8%)

Query: 102 EKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQV 161
           + +T+  + E  VLI+V  +++N  DG       K      P +PG D+AG VV+  +  
Sbjct: 18  KNLTLDDLPEGDVLIRVAYSSVNYKDGLASIPGGKIVKR-YPFIPGIDLAGTVVE--SND 74

Query: 162 KEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQA-----AGLPL 216
             FK GDEV   I      G    G  +EY  V    + P PK L   +A     AG   
Sbjct: 75  PRFKPGDEV---IVTSYDLGVSHHGGYSEYARVPAEWVVPLPKGLTLKEAMILGTAGFTA 131

Query: 217 AIETAYEGLERTGFS-AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLK 275
           A+  +   LE  G +     +LV   +GGVGSL + +  ++ G   VA+T      ++LK
Sbjct: 132 AL--SIHRLEENGLTPEQGPVLVTGATGGVGSLAVSILAKL-GYEVVASTGKADAADYLK 188

Query: 276 SLGAD 280
            LGA 
Sbjct: 189 KLGAK 193

yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 326

>gnl|CDD|176251 cd08291, ETR_like_1, 2-enoyl thioester reductase (ETR) like proteins, child 1

 Score = 73.8 bits (182), Expect = 1e-14
 Identities = 85/339 (25%), Positives = 145/339 (42%), Gaps = 50/339 (14%)

Query: 84  MKAWLYGEYGG-VDVLKFD-EKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSP 141
           MKA L  EYG  ++V +    +  VP+    +VLIKV AA +NP D    +G++  +   
Sbjct: 1   MKALLLEEYGKPLEVKELSLPEPEVPEPGPGEVLIKVEAAPINPSDLGFLKGQY-GSTKA 59

Query: 142 LPTVPGYDVAGVVVKVGTQVKEFKEGDEVYGDINEK-ALEGPKQFGSLAEYTAVEERLLA 200
           LP  PG++ +G VV  G        G      I ++ A      +G+ AEY   + +   
Sbjct: 60  LPVPPGFEGSGTVVAAG-------GGPLAQSLIGKRVAFLAG-SYGTYAEYAVADAQQCL 111

Query: 201 PKPKNLDFVQAAGL---PLAIETAYEGLERTGFSAGKSILVLNGSGGVGSLVIQLAKQVF 257
           P P  + F Q A     PL   TA   LE       K+++    +  +G ++++L K   
Sbjct: 112 PLPDGVSFEQGASSFVNPL---TALGMLETAREEGAKAVVHTAAASALGRMLVRLCKAD- 167

Query: 258 GASRVAATSSTRNLEFLKSLGADLAIDYTKDNF-EDLPE-----KFDVVYDAIG--QCDR 309
           G   +        ++ LK +GA+  ++ +  +F EDL E        + +DA+G     +
Sbjct: 168 GIKVINIVRRKEQVDLLKKIGAEYVLNSSDPDFLEDLKELIAKLNATIFFDAVGGGLTGQ 227

Query: 310 AVKAIKEGGTVV-------ALTGAVTPP----------GF---RFVVTSNGEVLKKLNPY 349
            + A+  G T+         L   + P           GF    ++     EV+KKL   
Sbjct: 228 ILLAMPYGSTLYVYGYLSGKLDEPIDPVDLIFKNKSIEGFWLTTWLQKLGPEVVKKLKK- 286

Query: 350 LESGKVKPIIDPKGPFPFSQVVEAFSYIETNKATGKVVI 388
           L   ++K        +P +  +EA ++   N +TGK ++
Sbjct: 287 LVKTELKTTF--ASRYPLALTLEAIAFYSKNMSTGKKLL 323

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers, with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 324

>gnl|CDD|176204 cd08242, MDR_like, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 73.0 bits (180), Expect = 2e-14
 Identities = 78/328 (23%), Positives = 120/328 (36%), Gaps = 57/328 (17%)

Query: 84  MKA-WLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPL 142
           MKA  L G      +    E +  P+    + L++V+ A +   D +  +G       P 
Sbjct: 1   MKALVLDG-----GLDLRVEDLPKPEPPPGEALVRVLLAGICNTDLEIYKG-----YYPF 50

Query: 143 PTVPGYDVAGVVVKVGTQVKEFKEGDEVYGDIN-------------------EKALEGPK 183
           P VPG++  G+V +      E   G  V G+IN                      L    
Sbjct: 51  PGVPGHEFVGIVEEGPEA--ELV-GKRVVGEINIACGRCEYCRRGLYTHCPNRTVLGIVD 107

Query: 184 QFGSLAEYTAVEERLLAPKPKNLDFVQAAGL-PLAIETAYEGLERTGFSAGKSILVLNGS 242
           + G+ AEY  +    L   P  +   QA    PLA   A E LE+   + G  + VL G 
Sbjct: 108 RDGAFAEYLTLPLENLHVVPDLVPDEQAVFAEPLA--AALEILEQVPITPGDKVAVL-GD 164

Query: 243 GGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFEDLPEKFDVVYD 302
           G +G L+ Q+     G   V     +  L   + LG +  +    ++       FDVV +
Sbjct: 165 GKLGLLIAQVLAL-TGPDVVLVGRHSEKLALARRLGVETVLPDEAES---EGGGFDVVVE 220

Query: 303 AIGQCD---RAVKAIKEGGTVVALTGAVTPPGFRF---------VVTSNGEVLKKLNPYL 350
           A G       A++ ++  GTVV  +    P  F           +V S           L
Sbjct: 221 ATGSPSGLELALRLVRPRGTVVLKSTYAGPASFDLTKAVVNEITLVGSRCGPFAPALRLL 280

Query: 351 ESGKV--KPIIDPKGPFPFSQVVEAFSY 376
             G V   P+I     +P  + +EAF  
Sbjct: 281 RKGLVDVDPLIT--AVYPLEEALEAFER 306

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 319

>gnl|CDD|176186 cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)

 Score = 72.9 bits (180), Expect = 2e-14
 Identities = 60/191 (31%), Positives = 84/191 (43%), Gaps = 31/191 (16%)

Query: 140 SPLPTVPGYDVAGVVVKVGTQVKEFKEGDEV--------------------------YGD 173
           +  P VPG+++ G+VV VG++V +FK GD V                             
Sbjct: 51  TKYPLVPGHEIVGIVVAVGSKVTKFKVGDRVGVGCQVDSCGTCEQCKSGEEQYCPKGVVT 110

Query: 174 INEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLERTGFSAG 233
            N K  +G    G  A++  V+ER +   P+ LD   AA L  A  T Y  L+R G   G
Sbjct: 111 YNGKYPDGTITQGGYADHIVVDERFVFKIPEGLDSAAAAPLLCAGITVYSPLKRNGVGPG 170

Query: 234 KSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKD--NFE 291
           K + V+ G GG+G L ++ AK   GA   A + S    E    LGAD  I  TKD    +
Sbjct: 171 KRVGVV-GIGGLGHLAVKFAKA-LGAEVTAFSRSPSKKEDALKLGADEFIA-TKDPEAMK 227

Query: 292 DLPEKFDVVYD 302
                 D++ D
Sbjct: 228 KAAGSLDLIID 238

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 337

>gnl|CDD|219758 pfam08240, ADH_N, Alcohol dehydrogenase GroES-like domain

 Score = 68.0 bits (167), Expect = 3e-14
 Identities = 29/109 (26%), Positives = 40/109 (36%), Gaps = 20/109 (18%)

Query: 111 EDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKEFKEGDEV 170
             +VL++V AA +   D    +G+       LP + G++ AG+V +VG  V   K GD V
Sbjct: 1   PGEVLVRVKAAGICGSDLHIYRGEPPPV--KLPLILGHEGAGIVEEVGPGVTGLKVGDRV 58

Query: 171 YGDIN------------------EKALEGPKQFGSLAEYTAVEERLLAP 201
                                       G    G  AEY  V  R L P
Sbjct: 59  VVYPLIPCGKCAACREGRENLCPNGKFLGVHLDGGFAEYVVVPARNLVP 107

This is the catalytic domain of alcohol dehydrogenases. Many of them contain an inserted zinc binding domain. This domain has a GroES-like structure. Length = 108

>gnl|CDD|129775 TIGR00692, tdh, L-threonine 3-dehydrogenase

 Score = 70.3 bits (172), Expect = 2e-13
 Identities = 92/353 (26%), Positives = 144/353 (40%), Gaps = 71/353 (20%)

Query: 90  GEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQ-GKFKATDSPLPTVPGY 148
             YG         +V VP+    +VLIKV+A ++   D       ++  +    P V G+
Sbjct: 7   PGYGAELT-----EVPVPEPGPGEVLIKVLATSICGTDVHIYNWDEWAQSRIKPPQVVGH 61

Query: 149 DVAGVVVKVGTQVKEFKEGDEVYGDIN------------------EKALEGPKQFGSLAE 190
           +VAG VV +G  V+  K GD V  + +                     + G    G  AE
Sbjct: 62  EVAGEVVGIGPGVEGIKVGDYVSVETHIVCGKCYACRRGQYHVCQNTKIFGVDTDGCFAE 121

Query: 191 YTAVEERLLAPKPKNLDFVQAAGL-PL--AIETAYEGLERTGFSAGKSILVLNGSGGVGS 247
           Y  V  + +   PK++    A    PL  A+ T   G       +GKS+LV  G+G +G 
Sbjct: 122 YAVVPAQNIWKNPKSIPPEYATIQEPLGNAVHTVLAGP-----ISGKSVLVT-GAGPIGL 175

Query: 248 LVIQLAKQVFGASRVAATS-STRNLEFLKSLGADLAIDYTKDNFEDL------PEKFDVV 300
           + I +AK   GA  V  +  +   LE  K +GA   ++  K++           E  DV 
Sbjct: 176 MAIAVAKAS-GAYPVIVSDPNEYRLELAKKMGATYVVNPFKEDVVKEVADLTDGEGVDVF 234

Query: 301 YDAIGQCDRAVKAIKEGGTVVALTGAVT----PPGFRFVVTSNGEVLKKLNPY------- 349
            +  G    A KA+++G   V   G V+    PPG   +  +N  + K L  Y       
Sbjct: 235 LEMSG----APKALEQGLQAVTPGGRVSLLGLPPGKVTIDFTNKVIFKGLTIYGITGRHM 290

Query: 350 ----------LESGKVK--PIIDPKGPFPFSQVVEAFSYIETNKATGKVVIHP 390
                     ++SGK+   PII  K  F F +  + F  + + + TGKV++  
Sbjct: 291 FETWYTVSRLIQSGKLDLDPIITHK--FKFDKFEKGFELMRSGQ-TGKVILSL 340

This protein is a tetrameric, zinc-binding, NAD-dependent enzyme of threonine catabolism. Closely related proteins include sorbitol dehydrogenase, xylitol dehydrogenase, and benzyl alcohol dehydrogenase. Eukaryotic examples of this enzyme have been demonstrated experimentally but do not appear in database search results.E. coli His-90 modulates substrate specificity and is believed part of the active site [Energy metabolism, Amino acids and amines]. Length = 340

>gnl|CDD|176245 cd08285, NADP_ADH, NADP(H)-dependent alcohol dehydrogenases

 Score = 69.2 bits (170), Expect = 5e-13
 Identities = 86/301 (28%), Positives = 120/301 (39%), Gaps = 64/301 (21%)

Query: 147 GYDVAGVVVKVGTQVKEFKEGDEVY-GDIN-----EKALEG-PKQF-------------- 185
           G++  GVV +VG++VK+FK GD V    I        A  G P Q               
Sbjct: 58  GHEAVGVVEEVGSEVKDFKPGDRVIVPAITPDWRSVAAQRGYPSQSGGMLGGWKFSNFKD 117

Query: 186 GSLAEYTAVEERL--LAPKPKNLDFVQAAGLPLAIETAYEGLERTGFSAGKSILVLNGSG 243
           G  AEY  V +    LAP P  L   QA  LP  + T + G E      G ++ V  G G
Sbjct: 118 GVFAEYFHVNDADANLAPLPDGLTDEQAVMLPDMMSTGFHGAELANIKLGDTVAVF-GIG 176

Query: 244 GVGSLVIQLAKQVFGASRVAATSSTRN-LEFLKSLGADLAIDYTKDNFEDLPEKF----- 297
            VG + +  A+ + GA R+ A  S  N +E  K  GA   +DY   +  +   K      
Sbjct: 177 PVGLMAVAGAR-LRGAGRIIAVGSRPNRVELAKEYGATDIVDYKNGDVVEQILKLTGGKG 235

Query: 298 -DVVYDAIGQCD---RAVKAIKEGGTV----VALTGAVTP-PGFRFVV-----TSNG--- 340
            D V  A G  D   +A+K +K GGT+            P P   + V     T NG   
Sbjct: 236 VDAVIIAGGGQDTFEQALKVLKPGGTISNVNYYGEDDYLPIPREEWGVGMGHKTINGGLC 295

Query: 341 ----EVLKKLNPYLESGKVKPIIDPKGP-----FPFSQVVEAFSYIETNKATG--KVVIH 389
                 +++L   +E G+V    DP        F F  + EA   ++ +K     K VI 
Sbjct: 296 PGGRLRMERLASLIEYGRV----DPSKLLTHHFFGFDDIEEALMLMK-DKPDDLIKPVII 350

Query: 390 P 390
            
Sbjct: 351 F 351

This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 351

>gnl|CDD|181842 PRK09422, PRK09422, ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional

 Score = 67.8 bits (166), Expect = 1e-12
 Identities = 78/290 (26%), Positives = 124/290 (42%), Gaps = 57/290 (19%)

Query: 145 VPGYDVAGVVVKVGTQVKEFKEGDEV-----YGDIN--EKALEGPKQF------------ 185
           + G++  G+V +VG  V   K GD V     +      E    G +              
Sbjct: 56  ILGHEGIGIVKEVGPGVTSLKVGDRVSIAWFFEGCGHCEYCTTGRETLCRSVKNAGYTVD 115

Query: 186 GSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLERTGFSAGKSILVLNGSGGV 245
           G +AE   V        P+ LD  QA+ +  A  T Y+ ++ +G   G+ I  + G+GG+
Sbjct: 116 GGMAEQCIVTADYAVKVPEGLDPAQASSITCAGVTTYKAIKVSGIKPGQWI-AIYGAGGL 174

Query: 246 GSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFEDLP----EKFDVVY 301
           G+L +Q AK VF A  +A   +   L   K +GADL I+  +   ED+     EK    +
Sbjct: 175 GNLALQYAKNVFNAKVIAVDINDDKLALAKEVGADLTINSKRV--EDVAKIIQEKTGGAH 232

Query: 302 DAI------GQCDRAVKAIKEGGTVVALTGAVTPPGF------RFVVTSNG-EV------ 342
            A+         ++AV A++ GG VVA+     PP        R V+  +G EV      
Sbjct: 233 AAVVTAVAKAAFNQAVDAVRAGGRVVAVG---LPPESMDLSIPRLVL--DGIEVVGSLVG 287

Query: 343 ----LKKLNPYLESGKVKPIIDPKGPFPFSQVVEAFSYIETNKATGKVVI 388
               L++   +   GKV P +  +   P   + + F  +E  K  G++VI
Sbjct: 288 TRQDLEEAFQFGAEGKVVPKVQLR---PLEDINDIFDEMEQGKIQGRMVI 334

Length = 338

>gnl|CDD|182701 PRK10754, PRK10754, quinone oxidoreductase, NADPH-dependent; Provisional

 Score = 67.1 bits (164), Expect = 2e-12
 Identities = 71/226 (31%), Positives = 103/226 (45%), Gaps = 27/226 (11%)

Query: 92  YGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVP---GY 148
           +GG +VL+  E  T     E++V ++  A  +N +D   R G +     P P++P   G 
Sbjct: 10  HGGPEVLQAVE-FTPADPAENEVQVENKAIGINYIDTYIRSGLY-----PPPSLPSGLGT 63

Query: 149 DVAGVVVKVGTQVKEFKEGDEV-YGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLD 207
           + AGVV KVG+ VK  K GD V Y    + AL      G+ +    V     A  P  + 
Sbjct: 64  EAAGVVSKVGSGVKHIKVGDRVVYA---QSAL------GAYSSVHNVPADKAAILPDAIS 114

Query: 208 FVQAAGLPLAIETAYEGLERT-GFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATS 266
           F QAA   L   T Y  L +T      +  L    +GGVG +  Q AK   GA  +    
Sbjct: 115 FEQAAASFLKGLTVYYLLRKTYEIKPDEQFLFHAAAGGVGLIACQWAK-ALGAKLIGTVG 173

Query: 267 STRNLEFLKSLGADLAIDYTKDNF-EDLPE-----KFDVVYDAIGQ 306
           S +  +  K  GA   I+Y ++N  E + E     K  VVYD++G+
Sbjct: 174 SAQKAQRAKKAGAWQVINYREENIVERVKEITGGKKVRVVYDSVGK 219

Length = 327

>gnl|CDD|215721 pfam00107, ADH_zinc_N, Zinc-binding dehydrogenase

 Score = 63.1 bits (154), Expect = 3e-12
 Identities = 33/88 (37%), Positives = 47/88 (53%), Gaps = 11/88 (12%)

Query: 244 GVGSLVIQLAKQVFGASRVAAT-SSTRNLEFLKSLGADLAIDYTKDNFEDLPEK------ 296
           GVG   +QLAK   GA+RV A   S   LE  K LGAD  I+Y  ++F +   +      
Sbjct: 1   GVGLAAVQLAK-ALGAARVIAVDRSEEKLELAKELGADHVINYRDEDFVERVRELTGGRG 59

Query: 297 FDVVYDAIGQ---CDRAVKAIKEGGTVV 321
            DVV D +G     ++A++ ++ GG VV
Sbjct: 60  VDVVIDCVGAPATLEQALELLRPGGRVV 87

Length = 131

>gnl|CDD|176226 cd08265, Zn_ADH3, Alcohol dehydrogenases of the MDR family

 Score = 64.8 bits (158), Expect = 2e-11
 Identities = 89/352 (25%), Positives = 129/352 (36%), Gaps = 73/352 (20%)

Query: 102 EKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSP----------LPTVPGYDVA 151
           E V VP +K D++LI+V A  +   D          TD             P V G++ +
Sbjct: 42  EDVPVPNLKPDEILIRVKACGICGSDIH-----LYETDKDGYILYPGLTEFPVVIGHEFS 96

Query: 152 GVVVKVGTQVKEFKEGDEVY---------------GDIN---EKALEGPKQFGSLAEYTA 193
           GVV K G  VK F++GD V                G  N        G    G+ AEY A
Sbjct: 97  GVVEKTGKNVKNFEKGDPVTAEEMMWCGMCRACRSGSPNHCKNLKELGFSADGAFAEYIA 156

Query: 194 VEERLLAPKPKNLDF------VQAAGLPLAIETAYEGL-ERT-GFSAGKSILVLNGSGGV 245
           V  R      +  +        +A  L      AY GL  R  GF  G  ++V  G+G +
Sbjct: 157 VNARYAWEINELREIYSEDKAFEAGALVEPTSVAYNGLFIRGGGFRPGAYVVVY-GAGPI 215

Query: 246 GSLVIQLAKQVFGASRVAAT--SSTRNLEFLKSLGADLAIDYTKDNFEDLPEKF------ 297
           G   I LAK   GAS+V A   S  R     K +GAD   + TK       EK       
Sbjct: 216 GLAAIALAKAA-GASKVIAFEISEERR-NLAKEMGADYVFNPTKMRDCLSGEKVMEVTKG 273

Query: 298 ---DVVYDAIGQCDRAVKAIKE----GGTVVALTGAVTPPGFRF---------VVTSNGE 341
              D+  +A G     +  +++     G +V +  A T               +V + G 
Sbjct: 274 WGADIQVEAAGAPPATIPQMEKSIAINGKIVYIGRAATTVPLHLEVLQVRRAQIVGAQGH 333

Query: 342 ----VLKKLNPYLESGKVKPIIDPKGPFPFSQVVEAFSYIETNKATGKVVIH 389
               +   +   + SGK+         FP   ++EA     + +  GK+ I 
Sbjct: 334 SGHGIFPSVIKLMASGKIDMTKIITARFPLEGIMEAIKA-ASERTDGKITIL 384

This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Other MDR members have only a catalytic zinc, and some contain no coordinated zinc. Length = 384

>gnl|CDD|166227 PLN02586, PLN02586, probable cinnamyl alcohol dehydrogenase

 Score = 63.4 bits (154), Expect = 4e-11
 Identities = 44/164 (26%), Positives = 71/164 (43%), Gaps = 26/164 (15%)

Query: 143 PTVPGYDVAGVVVKVGTQVKEFKEGDEVYGDI--------------------------NE 176
           P VPG+++ G+V K+G  VK+FKEGD V   +                          N 
Sbjct: 67  PIVPGHEIVGIVTKLGKNVKKFKEGDRVGVGVIVGSCKSCESCDQDLENYCPKMIFTYNS 126

Query: 177 KALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLERTGFSAGKSI 236
              +G K +G  ++   V++  +   P NL     A L  A  T Y  ++  G +     
Sbjct: 127 IGHDGTKNYGGYSDMIVVDQHFVLRFPDNLPLDAGAPLLCAGITVYSPMKYYGMTEPGKH 186

Query: 237 LVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGAD 280
           L + G GG+G + +++ K       V ++SS +  E +  LGAD
Sbjct: 187 LGVAGLGGLGHVAVKIGKAFGLKVTVISSSSNKEDEAINRLGAD 230

Length = 360

>gnl|CDD|182130 PRK09880, PRK09880, L-idonate 5-dehydrogenase; Provisional

 Score = 63.2 bits (154), Expect = 5e-11
 Identities = 66/279 (23%), Positives = 104/279 (37%), Gaps = 60/279 (21%)

Query: 143 PTVPGYDVAGVVVKVGTQVKEFKEGDEVYGDIN--------EKALEGPKQ-------FGS 187
           P V G++V G +V   +     KEG  V   IN        +  L   +        FGS
Sbjct: 60  PMVLGHEVIGKIVH--SDSSGLKEGQTV--AINPSKPCGHCKYCLSHNENQCTTMRFFGS 115

Query: 188 ----------LAEYTAVEERLLAPKPKNLDF-VQAAGLPLAIETAYEGLERTGFSAGKSI 236
                        Y  V+     P P+  D  V A   PLA+  A     + G   GK +
Sbjct: 116 AMYFPHVDGGFTRYKVVDTAQCIPYPEKADEKVMAFAEPLAV--AIHAAHQAGDLQGKRV 173

Query: 237 LVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFEDLPEK 296
            V +G G +G L++   K +  A  V A  S R+L   + +GAD  ++   D+ +    +
Sbjct: 174 FV-SGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGADKLVNPQNDDLDHYKAE 232

Query: 297 ---FDVVYDAIGQCD---RAVKAIKEGGTVVALTGAVTPP----------------GFRF 334
              FDV ++  G        ++  +  G +V +     PP                 FRF
Sbjct: 233 KGYFDVSFEVSGHPSSINTCLEVTRAKGVMVQVGMGGAPPEFPMMTLIVKEISLKGSFRF 292

Query: 335 VVTSNGEVLKKLNPYLESGKVKPIIDPKGPFPFSQVVEA 373
               N  V      +L +G + P+      +PF+ + EA
Sbjct: 293 TEEFNTAV-----SWLANGVINPLPLLSAEYPFTDLEEA 326

Length = 343

>gnl|CDD|223990 COG1062, AdhC, Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]

 Score = 63.4 bits (155), Expect = 5e-11
 Identities = 66/293 (22%), Positives = 101/293 (34%), Gaps = 68/293 (23%)

Query: 102 EKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQV 161
           E+V +   +  +VL+++ A  +   D     G         P V G++ AG+V  VG  V
Sbjct: 18  EEVDLDPPRAGEVLVRITATGVCHTDAHTLSG---DDPEGFPAVLGHEGAGIVEAVGEGV 74

Query: 162 KEFKEGDEV------------------------YGDINEKA--LEGPKQF---------- 185
              K GD V                              K    +G  +           
Sbjct: 75  TSVKPGDHVILLFTPECGQCKFCLSGKPNLCEAIRATQGKGTMPDGTTRLSGNGVPVYHY 134

Query: 186 ---GSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLERTG-FSAGKSILVLNG 241
               + AEYT V E  L     +    +A  L   + T    +  T     G ++ V  G
Sbjct: 135 LGCSTFAEYTVVHEISLVKIDPDAPLEKACLLGCGVTTGIGAVVNTAKVEPGDTVAVF-G 193

Query: 242 SGGVGSLVIQLAKQVFGASRVAA--TSSTRNLEFLKSLGADLAIDYTKDNFEDLPEKF-- 297
            GGVG   IQ AK   GA R+ A   +  + LE  K  GA   ++      +D+ E    
Sbjct: 194 LGGVGLAAIQGAKAA-GAGRIIAVDINPEK-LELAKKFGATHFVN--PKEVDDVVEAIVE 249

Query: 298 ------DVVYDAIGQC---DRAVKAIKEGGTVVALTGAVTP------PGFRFV 335
                 D  ++ +G      +A++A   GGT V + G            F+ V
Sbjct: 250 LTDGGADYAFECVGNVEVMRQALEATHRGGTSV-IIGVAGAGQEISTRPFQLV 301

Length = 366

>gnl|CDD|176193 cd08231, MDR_TM0436_like, Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH)

 Score = 62.7 bits (153), Expect = 8e-11
 Identities = 91/374 (24%), Positives = 128/374 (34%), Gaps = 113/374 (30%)

Query: 102 EKVTVPQVKEDQVLIKVVAAA-----LNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVK 156
            +V +P ++   VL++V  A      ++ V G+R +        PLP + G++  G VV 
Sbjct: 16  REVPLPDLEPGAVLVRVRLAGVCGSDVHTVAGRRPRV-------PLPIILGHEGVGRVVA 68

Query: 157 VGTQV------KEFKEGDEV---------------------------YGDINEKALEGPK 183
           +G  V      +  K GD V                           YG   E + + P 
Sbjct: 69  LGGGVTTDVAGEPLKVGDRVTWSVGAPCGRCYRCLVGDPTKCENRKKYGH--EASCDDPH 126

Query: 184 QFGSLAEYTAVE-ERLLAPKPKNLDFVQAAGLPLAIETAYEGLERTGFSAGKSILVLNGS 242
             G  AE+  +     +   P N+    AA    A+ T    L+R G       +V+ G+
Sbjct: 127 LSGGYAEHIYLPPGTAIVRVPDNVPDEVAAPANCALATVLAALDRAGPVGAGDTVVVQGA 186

Query: 243 GGVGSLVIQLAKQVFGASRVAAT--SSTRNLEFLKSLGADLAIDYTKDNFEDLPEK---- 296
           G +G   +  AK   GA RV     S  R LE  +  GAD  ID  +             
Sbjct: 187 GPLGLYAVAAAKL-AGARRVIVIDGSPER-LELAREFGADATIDIDELPDPQRRAIVRDI 244

Query: 297 -----FDVVYDAIGQCDRAVKAIKE-------GGTVVALTGAVTPPGFRFVVTSNGEVLK 344
                 DVV +A G       A+ E       GGT V L G+V P          G V  
Sbjct: 245 TGGRGADVVIEASG----HPAAVPEGLELLRRGGTYV-LVGSVAP---------AGTV-- 288

Query: 345 KLNPYLESGKVKPII-----DPK-----------------------GPFPFSQVVEAFSY 376
            L+P     K   II     DP                          +P   + EA   
Sbjct: 289 PLDPERIVRKNLTIIGVHNYDPSHLYRAVRFLERTQDRFPFAELVTHRYPLEDINEALEL 348

Query: 377 IETNKATGKVVIHP 390
            E+  A  KVVI P
Sbjct: 349 AESGTAL-KVVIDP 361

This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 361

>gnl|CDD|215378 PLN02702, PLN02702, L-idonate 5-dehydrogenase

 Score = 61.7 bits (150), Expect = 1e-10
 Identities = 96/347 (27%), Positives = 138/347 (39%), Gaps = 73/347 (21%)

Query: 84  MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVD----GKRRQGKFKATD 139
           M AWL G    V+ LK  +   +P +    V +++ A  +   D       R   F   +
Sbjct: 19  MAAWLVG----VNTLKI-QPFKLPPLGPHDVRVRMKAVGICGSDVHYLKTMRCADFVVKE 73

Query: 140 SPLPTVPGYDVAGVVVKVGTQVKEFKEGDEVY---------------GDIN----EKALE 180
              P V G++ AG++ +VG++VK    GD V                G  N     K   
Sbjct: 74  ---PMVIGHECAGIIEEVGSEVKHLVVGDRVALEPGISCWRCNLCKEGRYNLCPEMKFFA 130

Query: 181 GPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGL-PLAIETAYEGLERTGFSAGKSILVL 239
            P   GSLA        L    P+N+   + A   PL++        R       ++LV+
Sbjct: 131 TPPVHGSLANQVVHPADLCFKLPENVSLEEGAMCEPLSV--GVHACRRANIGPETNVLVM 188

Query: 240 NGSGGVGSLVIQLAKQVFGASR-VAATSSTRNLEFLKSLGADLAIDYTKDNFEDLPEK-- 296
            G+G +G LV  LA + FGA R V        L   K LGAD  +  +  N ED+  +  
Sbjct: 189 -GAGPIG-LVTMLAARAFGAPRIVIVDVDDERLSVAKQLGADEIVLVST-NIEDVESEVE 245

Query: 297 ---------FDVVYDAIG---QCDRAVKAIKEGGTVVA-------LTGAVTPPGFRFVVT 337
                     DV +D +G       A++A + GG V         +T  +TP   R V  
Sbjct: 246 EIQKAMGGGIDVSFDCVGFNKTMSTALEATRAGGKVCLVGMGHNEMTVPLTPAAAREVDV 305

Query: 338 SNGEVLKKLNPY------LESGK--VKPIIDPKGPFPFSQ--VVEAF 374
               V +  N +      L SGK  VKP+I  +  F FSQ  V EAF
Sbjct: 306 VG--VFRYRNTWPLCLEFLRSGKIDVKPLITHR--FGFSQKEVEEAF 348

Length = 364

>gnl|CDD|166155 PLN02514, PLN02514, cinnamyl-alcohol dehydrogenase

 Score = 59.0 bits (143), Expect = 1e-09
 Identities = 56/203 (27%), Positives = 89/203 (43%), Gaps = 44/203 (21%)

Query: 112 DQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKEFKEGDEV- 170
           + V+IKV+   +   D  + +     ++ P+  VPG++V G VV+VG+ V +F  GD V 
Sbjct: 35  EDVVIKVIYCGICHTDLHQIKNDLGMSNYPM--VPGHEVVGEVVEVGSDVSKFTVGDIVG 92

Query: 171 ----------------------------YGDINEKALEGPKQFGSLAEYTAVEERLLAPK 202
                                       Y D+       P Q G  A    V+++ +   
Sbjct: 93  VGVIVGCCGECSPCKSDLEQYCNKRIWSYNDVYTDG--KPTQ-GGFASAMVVDQKFVVKI 149

Query: 203 PKNLDFVQAAGLPLAIETAYE-----GLERTGFSAGKSILVLNGSGGVGSLVIQLAKQVF 257
           P+ +   QAA L  A  T Y      GL+++G   G  IL   G GGVG + +++AK + 
Sbjct: 150 PEGMAPEQAAPLLCAGVTVYSPLSHFGLKQSGLRGG--IL---GLGGVGHMGVKIAKAMG 204

Query: 258 GASRVAATSSTRNLEFLKSLGAD 280
               V ++S  +  E L+ LGAD
Sbjct: 205 HHVTVISSSDKKREEALEHLGAD 227

Length = 357

>gnl|CDD|177834 PLN02178, PLN02178, cinnamyl-alcohol dehydrogenase

 Score = 57.3 bits (138), Expect = 4e-09
 Identities = 45/169 (26%), Positives = 73/169 (43%), Gaps = 29/169 (17%)

Query: 140 SPLPTVPGYDVAGVVVKVGTQVKEFKEGD--------------------------EVYGD 173
           S  P +PG+++ G+  KVG  V +FKEGD                          +V   
Sbjct: 58  SRYPIIPGHEIVGIATKVGKNVTKFKEGDRVGVGVIIGSCQSCESCNQDLENYCPKVVFT 117

Query: 174 INEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLERTGFS-- 231
            N ++ +G +  G  ++   V+ R +   P  L     A L  A  T Y  ++  G +  
Sbjct: 118 YNSRSSDGTRNQGGYSDVIVVDHRFVLSIPDGLPSDSGAPLLCAGITVYSPMKYYGMTKE 177

Query: 232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGAD 280
           +GK + V NG GG+G + +++ K       V + SS +  E +  LGAD
Sbjct: 178 SGKRLGV-NGLGGLGHIAVKIGKAFGLRVTVISRSSEKEREAIDRLGAD 225

Length = 375

>gnl|CDD|182371 PRK10309, PRK10309, galactitol-1-phosphate dehydrogenase; Provisional

 Score = 56.4 bits (136), Expect = 7e-09
 Identities = 57/217 (26%), Positives = 90/217 (41%), Gaps = 30/217 (13%)

Query: 84  MKAWLYGEYGGVDVLKFDEKVTVPQVK-EDQVLIKVVAAALNPVDGKRRQGKFKATDSPL 142
           MK+ +    G V V     +  +P++K +D VL+KV ++ L   D  R    FK      
Sbjct: 1   MKSVVNDTDGIVRV----AESPIPEIKHQDDVLVKVASSGLCGSDIPR---IFKNGAHYY 53

Query: 143 PTVPGYDVAGVVVKVGTQVKEFKEGDEV------------------YGDINEKALEGPKQ 184
           P   G++ +G V  VG+ V +   GD V                  Y    +    G ++
Sbjct: 54  PITLGHEFSGYVEAVGSGVDDLHPGDAVACVPLLPCFTCPECLRGFYSLCAKYDFIGSRR 113

Query: 185 FGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLERTGFSAGKSILVLNGSGG 244
            G  AEY  V+ + L   P ++     A +   I              GK+++++ G+G 
Sbjct: 114 DGGNAEYIVVKRKNLFALPTDMPIEDGAFIE-PITVGLHAFHLAQGCEGKNVIII-GAGT 171

Query: 245 VGSLVIQLAKQVFGASRVAATS-STRNLEFLKSLGAD 280
           +G L IQ A  + GA  V A   ++  L   KSLGA 
Sbjct: 172 IGLLAIQCAVAL-GAKSVTAIDINSEKLALAKSLGAM 207

Length = 347

>gnl|CDD|176238 cd08277, liver_alcohol_DH_like, Liver alcohol dehydrogenase

 Score = 55.0 bits (133), Expect = 2e-08
 Identities = 48/198 (24%), Positives = 70/198 (35%), Gaps = 46/198 (23%)

Query: 104 VTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKE 163
           V  P+  E  V IK++A ++   D    +G      +  P + G++ AG+V  VG  V  
Sbjct: 22  VAPPKANE--VRIKMLATSVCHTDILAIEGFKA---TLFPVILGHEGAGIVESVGEGVTN 76

Query: 164 FKEGDEVY-----------------------GDINEKALE--GPKQF------------- 185
            K GD+V                           NE  L   G  +F             
Sbjct: 77  LKPGDKVIPLFIGQCGECSNCRSGKTNLCQKYRANESGLMPDGTSRFTCKGKKIYHFLGT 136

Query: 186 GSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLERTG-FSAGKSILVLNGSGG 244
            + ++YT V+E  +A             L     T Y     T     G ++ V  G G 
Sbjct: 137 STFSQYTVVDENYVAKIDPAAPLEHVCLLGCGFSTGYGAAWNTAKVEPGSTVAVF-GLGA 195

Query: 245 VGSLVIQLAKQVFGASRV 262
           VG   I  AK + GASR+
Sbjct: 196 VGLSAIMGAK-IAGASRI 212

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the substrate binding pocket and therefore in substrate specificity. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine (His-51), the ribose of NAD, a serine (Ser-48) , then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 365

>gnl|CDD|188504 TIGR03989, Rxyl_3153, oxidoreductase, Rxyl_3153 family

 Score = 55.0 bits (133), Expect = 2e-08
 Identities = 52/206 (25%), Positives = 80/206 (38%), Gaps = 50/206 (24%)

Query: 102 EKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSP---LPTVPGYDVAGVVVKVG 158
           E++ +   K  +VL+K+VA+ L   D     G     D P    P + G++ AGVV KVG
Sbjct: 17  EEIELDDPKAGEVLVKLVASGLCHSDEHLVTG-----DLPMPRYPILGGHEGAGVVTKVG 71

Query: 159 TQVKEFKEGDEV--------------------YGDINEKALEGPK--------------- 183
             V   K GD V                      D+    L G +               
Sbjct: 72  PGVTGVKPGDHVVLSFIPACGRCRWCSTGLQNLCDLGAALLTGSQISDGTYRFHADGQDV 131

Query: 184 -QF---GSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAY-EGLERTGFSAGKSILV 238
            Q    G+ +EYT V E  +     ++   +A  +   + T +   +       G +++V
Sbjct: 132 GQMCLLGTFSEYTVVPEASVVKIDDDIPLDKACLVGCGVPTGWGSAVNIADVRPGDTVVV 191

Query: 239 LNGSGGVGSLVIQLAKQVFGASRVAA 264
           + G GGVG   +Q A  V GA +V A
Sbjct: 192 M-GIGGVGINAVQGAA-VAGARKVIA 215

This model describes a clade within the family pfam00107 of zinc-binding dehydrogenases. The family pfam00107 contains class III alcohol dehydrogenases, including enzymes designated S-(hydroxymethyl)glutathione dehydrogenase and NAD/mycothiol-dependent formaldehyde dehydrogenase. Members of the current family occur only in species that contain the very small protein mycofactocin (TIGR03969), a possible cofactor precursor, and radical SAM protein TIGR03962. We name this family for Rxyl_3153, where the lone member of the family co-clusters with these markers in Rubrobacter xylanophilus [Unknown function, Enzymes of unknown specificity]. Length = 369

>gnl|CDD|176241 cd08281, liver_ADH_like1, Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

 Score = 54.3 bits (131), Expect = 4e-08
 Identities = 67/274 (24%), Positives = 104/274 (37%), Gaps = 64/274 (23%)

Query: 102 EKVTVPQVKEDQVLIKVVAAA-----LNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVK 156
           E+V +      +VL+K+ AA      L+ ++G R +        PLP   G++ AGVVV+
Sbjct: 24  EEVELDPPGPGEVLVKIAAAGLCHSDLSVINGDRPR--------PLPMALGHEAAGVVVE 75

Query: 157 VGTQVKEFKEGDEVY------------------------GDINEKA--LEGPKQF----- 185
           VG  V + + GD V                            N     L G ++      
Sbjct: 76  VGEGVTDLEVGDHVVLVFVPSCGHCRPCAEGRPALCEPGAAANGAGTLLSGGRRLRLRGG 135

Query: 186 --------GSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLERT-GFSAGKSI 236
                    + AEY  V  R +    K++    AA    A+ T    +  T G   G+S+
Sbjct: 136 EINHHLGVSAFAEYAVVSRRSVVKIDKDVPLEIAALFGCAVLTGVGAVVNTAGVRPGQSV 195

Query: 237 LVLNGSGGVGSLVIQLAKQVFGASRVAATS-STRNLEFLKSLGADLAIDYTKDNFEDLPE 295
            V+ G GGVG L   L     GAS+V A   +   L   + LGA   ++    N  +   
Sbjct: 196 AVV-GLGGVG-LSALLGAVAAGASQVVAVDLNEDKLALARELGATATVNAGDPNAVEQVR 253

Query: 296 KF-----DVVYDAIGQC---DRAVKAIKEGGTVV 321
           +      D  ++  G     + A +  + GGT V
Sbjct: 254 ELTGGGVDYAFEMAGSVPALETAYEITRRGGTTV 287

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to the corresponding carboxylic acid and alcohol. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 371

>gnl|CDD|176223 cd08262, Zn_ADH8, Alcohol dehydrogenases of the MDR family

 Score = 53.5 bits (129), Expect = 7e-08
 Identities = 54/200 (27%), Positives = 74/200 (37%), Gaps = 32/200 (16%)

Query: 113 QVLIKVVA---------AALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQV-K 162
           QVL+KV+A         A  +P       G     D     V G++  G VV  G    +
Sbjct: 25  QVLVKVLACGICGSDLHATAHPEAMVDDAGGPSLMDLGADIVLGHEFCGEVVDYGPGTER 84

Query: 163 EFKEGDEV------------YGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQ 210
           + K G  V               I       P+  G  AEY  + E LL   P  L    
Sbjct: 85  KLKVGTRVTSLPLLLCGQGASCGI----GLSPEAPGGYAEYMLLSEALLLRVPDGLSMED 140

Query: 211 AAGL-PLAIETAYEGLERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASR-VAATSST 268
           AA   PLA+      + R   + G+  LV+ G G +G  VI   K   G    VA+  S 
Sbjct: 141 AALTEPLAV--GLHAVRRARLTPGEVALVI-GCGPIGLAVIAALKA-RGVGPIVASDFSP 196

Query: 269 RNLEFLKSLGADLAIDYTKD 288
                  ++GAD+ +D   D
Sbjct: 197 ERRALALAMGADIVVDPAAD 216

The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 341

>gnl|CDD|176254 cd08294, leukotriene_B4_DH_like, 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity

 Score = 52.3 bits (126), Expect = 2e-07
 Identities = 37/109 (33%), Positives = 54/109 (49%), Gaps = 10/109 (9%)

Query: 203 PKNLDFVQAAGLPLAIETAYEGL-ERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASR 261
           P +L  +   G+P    TAY GL E     AG++++V   +G VGSLV Q+AK + G   
Sbjct: 116 PPSL-ALGVLGMPGL--TAYFGLLEICKPKAGETVVVNGAAGAVGSLVGQIAK-IKGCKV 171

Query: 262 VAATSSTRNLEFLKSLGADLAIDY-TKDNFEDL----PEKFDVVYDAIG 305
           +    S   + +LK LG D   +Y T    E L    P+  D  +D +G
Sbjct: 172 IGCAGSDDKVAWLKELGFDAVFNYKTVSLEEALKEAAPDGIDCYFDNVG 220

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. Length = 329

>gnl|CDD|176192 cd08230, glucose_DH, Glucose dehydrogenase

 Score = 52.2 bits (126), Expect = 2e-07
 Identities = 67/285 (23%), Positives = 108/285 (37%), Gaps = 56/285 (19%)

Query: 104 VTVPQVKEDQVLIKVVAAALNPVDGKRRQ---GKF-KATDSPLPTVPGYDVAGVVVKVGT 159
           +  P+    +VL++ +      V G  R+   G++  A       V G++  GVV +VG 
Sbjct: 18  IPEPEPTPGEVLVRTLE---VGVCGTDREIVAGEYGTAPPGEDFLVLGHEALGVVEEVGD 74

Query: 160 QVKEFKEGDEVY-----------------------GDINEKALEGPKQFGSLAEYTAVEE 196
                  GD V                        G+  E+ ++G   F  + EY   + 
Sbjct: 75  G-SGLSPGDLVVPTVRRPPGKCLNCRIGRPDFCETGEYTERGIKGLHGF--MREYFVDDP 131

Query: 197 RLLAPKPKNLDFVQAAGL--PL-----AIETAYEGLERTGFSAGKSILVLNGSGGVGSLV 249
             L   P +L       L  PL     AIE A    +R      +  LVL G+G +G L 
Sbjct: 132 EYLVKVPPSL--ADVGVLLEPLSVVEKAIEQAEAVQKRLPTWNPRRALVL-GAGPIGLLA 188

Query: 250 IQLAKQ----VFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFED--LPEKFDVVYDA 303
             L +     V+  +R          + ++ LGA   ++ +K    +  L  +FD++ +A
Sbjct: 189 ALLLRLRGFEVYVLNRRDPPDPK--ADIVEELGATY-VNSSKTPVAEVKLVGEFDLIIEA 245

Query: 304 IGQCDRAVKAIKEGGT--VVALTGAVTPPGFRFVVTSNGEVLKKL 346
            G    A +A+       VV L G V   G  F V   GE+ + L
Sbjct: 246 TGVPPLAFEALPALAPNGVVILFG-VPGGGREFEVDG-GELNRDL 288

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 355

>gnl|CDD|176253 cd08293, PTGR2, Prostaglandin reductase

 Score = 51.6 bits (124), Expect = 3e-07
 Identities = 66/236 (27%), Positives = 111/236 (47%), Gaps = 26/236 (11%)

Query: 102 EKVTVP-QVKEDQVLIKVVAAALNPVDGKRRQGKFKATD--SPLPTVPGYDVAGVVVKVG 158
           E+ T+P ++ E QVL++ +  +++P   + R  +   TD  +P       D  GV V   
Sbjct: 26  EECTLPDELNEGQVLVRTLYLSVDPYM-RCRMNEDTGTDYLAPWQLSQVLDGGGVGVVEE 84

Query: 159 TQVKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLD-FVQAAGLPLA 217
           ++ ++F  GD V       +   P Q  ++ + +++E+        +L  F+ A GLP  
Sbjct: 85  SKHQKFAVGDIV------TSFNWPWQTYAVLDGSSLEKVDPQLVDGHLSYFLGAVGLPGL 138

Query: 218 IETAYEGLERTGF---SAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAAT-SSTRNLEF 273
             TA  G++  G     A ++++V   +G  GSL  Q+ + + G SRV     S    + 
Sbjct: 139 --TALIGIQEKGHITPGANQTMVVSGAAGACGSLAGQIGR-LLGCSRVVGICGSDEKCQL 195

Query: 274 LKS-LGADLAIDYTKDN-FEDL----PEKFDVVYDAIGQ--CDRAVKAIKEGGTVV 321
           LKS LG D AI+Y  DN  E L    PE  DV +D +G    D  +  + E   ++
Sbjct: 196 LKSELGFDAAINYKTDNVAERLRELCPEGVDVYFDNVGGEISDTVISQMNENSHII 251

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. Length = 345

>gnl|CDD|130269 TIGR01202, bchC, 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase

 Score = 49.5 bits (118), Expect = 1e-06
 Identities = 58/210 (27%), Positives = 84/210 (40%), Gaps = 31/210 (14%)

Query: 143 PTVPGYDVAGVVVKVGTQVKEFKEGDEVYGDINEKALEGPKQFGSL-AEYTAVEERLLAP 201
           P VPGY+  G VV+ G     F+ GD V+       + G   +  +   +    +RL+ P
Sbjct: 59  PLVPGYESVGRVVEAGPDTG-FRPGDRVF-------VPGSNCYEDVRGLFGGASKRLVTP 110

Query: 202 KPK--NLDFV---QAAGLPLAIETAYEGLERTGFSAGKSILVLNGSGGVGSLVIQLAKQV 256
             +   LD     Q A L LA  TA   +           L++ G G +G L+ +L K  
Sbjct: 111 ASRVCRLDPALGPQGALLALA-ATARHAVA-GAEVKVLPDLIV-GHGTLGRLLARLTK-A 166

Query: 257 FGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFEDLPEK-FDVVYDAIGQ---CDRAVK 312
            G S  A   +            D A  Y   + E  P + +  +YDA G     D  V+
Sbjct: 167 AGGSPPAVWET-------NPRRRDGATGYEVLDPEKDPRRDYRAIYDASGDPSLIDTLVR 219

Query: 313 AIKEGGTVVALTGAVTPP-GFRFVVTSNGE 341
            + +GG +V L G  T P  F FV     E
Sbjct: 220 RLAKGGEIV-LAGFYTEPVNFDFVPAFMKE 248

[Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 308

>gnl|CDD|131872 TIGR02825, B4_12hDH, leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase

 Score = 48.8 bits (116), Expect = 2e-06
 Identities = 49/154 (31%), Positives = 78/154 (50%), Gaps = 20/154 (12%)

Query: 196 ERLLAPKPKNLDFVQAAG-LPLAIETAYEGL-ERTGFSAGKSILVLNGSGGVGSLVIQLA 253
           E+LL   P  L    A G + +   TAY GL E  G   G++++V   +G VGS+V Q+A
Sbjct: 100 EKLLTEWPDTLPLSLALGTVGMPGLTAYFGLLEICGVKGGETVMVNAAAGAVGSVVGQIA 159

Query: 254 KQVFGASRVAATSSTRNLEFLKSLGADLAIDY-TKDNFEDL-----PEKFDVVYDAIGQ- 306
           K + G   V A  S   + +LK LG D+A +Y T  + E+      P+ +D  +D +G  
Sbjct: 160 K-LKGCKVVGAAGSDEKVAYLKKLGFDVAFNYKTVKSLEETLKKASPDGYDCYFDNVGGE 218

Query: 307 -CDRAVKAIKEGGTVVALTGAVT--------PPG 331
             +  +  +K+ G  +A+ GA++        PPG
Sbjct: 219 FSNTVIGQMKKFGR-IAICGAISTYNRTGPLPPG 251

Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase. Length = 325

>gnl|CDD|176239 cd08278, benzyl_alcohol_DH, Benzyl alcohol dehydrogenase

 Score = 49.0 bits (118), Expect = 2e-06
 Identities = 74/273 (27%), Positives = 102/273 (37%), Gaps = 76/273 (27%)

Query: 102 EKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQV 161
           E V +   + D+VL+++VA  +   D   R G      +PLP V G++ AGVV  VG+ V
Sbjct: 18  EDVELDDPRPDEVLVRIVATGICHTDLVVRDG---GLPTPLPAVLGHEGAGVVEAVGSAV 74

Query: 162 KEFKEGDEV-----------------------YGDIN--------EKALEGPKQ------ 184
              K GD V                       +  +N           L           
Sbjct: 75  TGLKPGDHVVLSFASCGECANCLSGHPAYCENFFPLNFSGRRPDGSTPLSLDDGTPVHGH 134

Query: 185 -FG--SLAEYTAVEERLLAPKPKNLDFVQAAGLPLA--IETAYEG----LERTGFSAGKS 235
            FG  S A Y  V ER +    K++     A  PL   I+T   G    L       G S
Sbjct: 135 FFGQSSFATYAVVHERNVVKVDKDVPLELLA--PLGCGIQT---GAGAVLNVLKPRPGSS 189

Query: 236 ILVLNGSGGVGSLVIQLAKQVFGASRVAATS-STRNLEFLKSLGADLAIDYTKDNFEDLP 294
           I V  G+G VG   +  AK + G + + A       LE  K LGA   I+         P
Sbjct: 190 IAVF-GAGAVGLAAVMAAK-IAGCTTIIAVDIVDSRLELAKELGATHVIN---------P 238

Query: 295 EKFDVVYDAIGQCDRAVKAIKEGGTVVAL--TG 325
           ++ D+V         A++ I  GG   AL  TG
Sbjct: 239 KEEDLV--------AAIREITGGGVDYALDTTG 263

Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 365

>gnl|CDD|132245 TIGR03201, dearomat_had, 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase

 Score = 48.0 bits (114), Expect = 4e-06
 Identities = 55/228 (24%), Positives = 93/228 (40%), Gaps = 44/228 (19%)

Query: 102 EKVTVPQVKEDQVLIKVVAAALNPVD------GKRRQGKFKATDSPLPTVPGYDVAGVVV 155
            +V +P++    V++KV    +   D      G R       T+  LP   G++++G V+
Sbjct: 14  TRVEIPELGAGDVVVKVAGCGVCHTDLSYYYMGVR-------TNHALPLALGHEISGRVI 66

Query: 156 KVGTQVKEFKEGDEV-----------------YGDI-NEKALEGPKQFGSLAEYTAVEER 197
           + G     +  G  V                  G I   + + G    G  A +  V  +
Sbjct: 67  QAGAGAASWI-GKAVIVPAVIPCGECELCKTGRGTICRAQKMPGNDMQGGFASHIVVPAK 125

Query: 198 LLAPKPKNLDFVQAAGLPL--------AIETAYEGLERTGFSAGKSILVLNGSGGVGSLV 249
            L    +    + AAGLPL        A+ T Y+   + G   G  ++V+ G+GGVG  +
Sbjct: 126 GLCVVDEAR--LAAAGLPLEHVSVVADAVTTPYQAAVQAGLKKGDLVIVI-GAGGVGGYM 182

Query: 250 IQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFEDLPEKF 297
           +Q AK   GA+ VA       LE +K  GADL ++    +  ++ +  
Sbjct: 183 VQTAK-AMGAAVVAIDIDPEKLEMMKGFGADLTLNPKDKSAREVKKLI 229

Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA. Length = 349

>gnl|CDD|176252 cd08292, ETR_like_2, 2-enoyl thioester reductase (ETR) like proteins, child 2

 Score = 46.9 bits (112), Expect = 9e-06
 Identities = 49/173 (28%), Positives = 74/173 (42%), Gaps = 14/173 (8%)

Query: 84  MKAWLYGEYGG-VDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPL 142
           M+A ++ ++G   DVL+  E    P     +VL++   + ++  D    +G +      L
Sbjct: 1   MRAAVHTQFGDPADVLEIGEVPK-PTPGAGEVLVRTTLSPIHNHDLWTIRGTY-GYKPEL 58

Query: 143 PTVPGYDVAGVVVKVGTQVKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPK 202
           P + G +  GVV  VG  VK  + G  V       A+      G+ AEY       L P 
Sbjct: 59  PAIGGSEAVGVVDAVGEGVKGLQVGQRV-------AVAP--VHGTWAEYFVAPADGLVPL 109

Query: 203 PKNLDFVQAAGLPLAIETAYEGLERTGFSAGKSILVLNGSGG-VGSLVIQLAK 254
           P  +    AA L     +A   L+  G   G+  L+ N +GG VG LV  LA 
Sbjct: 110 PDGISDEVAAQLIAMPLSALMLLDFLGVKPGQ-WLIQNAAGGAVGKLVAMLAA 161

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains, at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers, with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 324

>gnl|CDD|176242 cd08282, PFDH_like, Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH)

 Score = 46.8 bits (112), Expect = 1e-05
 Identities = 62/248 (25%), Positives = 98/248 (39%), Gaps = 63/248 (25%)

Query: 84  MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQ-VLIKVVAAA-----LNPVDGKRRQGKFKA 137
           MKA +YG  G V V    E V  P+++     ++++   A     L+   G+        
Sbjct: 1   MKAVVYGGPGNVAV----EDVPDPKIEHPTDAIVRITTTAICGSDLHMYRGR-------- 48

Query: 138 TDSPLPTVPGYDVAGVVVKVGTQVKEFKEGDEVYGDIN---------EKALEG------P 182
           T +    V G++  G V +VG+ V+  K GD V    N         ++ L G      P
Sbjct: 49  TGAEPGLVLGHEAMGEVEEVGSAVESLKVGDRVVVPFNVACGRCRNCKRGLTGVCLTVNP 108

Query: 183 KQFGSL-------------AEYTAV--EERLLAPKPK------NLDFVQAAG-LPLAIET 220
            + G               AEY  V   +  L   P         D++  +   P    T
Sbjct: 109 GRAGGAYGYVDMGPYGGGQAEYLRVPYADFNLLKLPDRDGAKEKDDYLMLSDIFP----T 164

Query: 221 AYEGLERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRV-AATSSTRNLEFLKSLGA 279
            + GLE  G   G ++ V  G+G VG L+   +  + GASRV         L+  +S+GA
Sbjct: 165 GWHGLELAGVQPGDTVAVF-GAGPVG-LMAAYSAILRGASRVYVVDHVPERLDLAESIGA 222

Query: 280 DLAIDYTK 287
            + ID++ 
Sbjct: 223 -IPIDFSD 229

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 375

>gnl|CDD|176255 cd08295, double_bond_reductase_like, Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase

 Score = 45.8 bits (109), Expect = 2e-05
 Identities = 51/176 (28%), Positives = 75/176 (42%), Gaps = 39/176 (22%)

Query: 147 GYDVAGVVVKVGTQVKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNL 206
           GY VA VV    +   +FK GD V+G                  +T  EE  L P+ ++L
Sbjct: 77  GYGVAKVVD---SGNPDFKVGDLVWG------------------FTGWEEYSLIPRGQDL 115

Query: 207 DFVQAAGLPLAIE---------TAYEGLERTGF-SAGKSILVLNGSGGVGSLVIQLAKQV 256
             +    +PL+           TAY G         G+++ V   SG VG LV QLAK +
Sbjct: 116 RKIDHTDVPLSYYLGLLGMPGLTAYAGFYEVCKPKKGETVFVSAASGAVGQLVGQLAK-L 174

Query: 257 FGASRVAATSSTRNLEFLKS-LGADLAIDYTKDNFED------LPEKFDVVYDAIG 305
            G   V +  S   ++ LK+ LG D A +Y ++   D       P   D+ +D +G
Sbjct: 175 KGCYVVGSAGSDEKVDLLKNKLGFDDAFNYKEEPDLDAALKRYFPNGIDIYFDNVG 230

This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in inflamatory cells, and in other cells by bifunctional LTB4 12-HD/PGR. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. Length = 338

>gnl|CDD|215606 PLN03154, PLN03154, putative allyl alcohol dehydrogenase; Provisional

 Score = 45.2 bits (107), Expect = 3e-05
 Identities = 61/203 (30%), Positives = 92/203 (45%), Gaps = 31/203 (15%)

Query: 143 PTVPGYDVAGVVVK--VGTQVKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLA 200
           P VPG  + G  V   V +    FK GD + G      + G +++ SL   +  + R + 
Sbjct: 73  PFVPGQRIEGFGVSKVVDSDDPNFKPGDLISG------ITGWEEY-SLIRSSDNQLRKIQ 125

Query: 201 -----PKPKNLDFVQAAGLPLAIETAYEGL-ERTGFSAGKSILVLNGSGGVGSLVIQLAK 254
                P   +L  +  AG      TAY G  E      G S+ V   SG VG LV QLAK
Sbjct: 126 LQDDIPLSYHLGLLGMAGF-----TAYAGFYEVCSPKKGDSVFVSAASGAVGQLVGQLAK 180

Query: 255 QVFGASRVAATSSTRNLEFLKS-LGADLAIDYTKDNFED------LPEKFDVVYDAIG-- 305
            + G   V +  S++ ++ LK+ LG D A +Y ++   D       PE  D+ +D +G  
Sbjct: 181 -LHGCYVVGSAGSSQKVDLLKNKLGFDEAFNYKEEPDLDAALKRYFPEGIDIYFDNVGGD 239

Query: 306 QCDRAVKAIKEGGTVVALTGAVT 328
             D A+  +K  G  +A+ G V+
Sbjct: 240 MLDAALLNMKIHGR-IAVCGMVS 261

Length = 348

>gnl|CDD|176259 cd08299, alcohol_DH_class_I_II_IV, class I, II, IV alcohol dehydrogenases

 Score = 44.2 bits (105), Expect = 7e-05
 Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 3/69 (4%)

Query: 102 EKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQV 161
           E++ V   K  +V IK+VA  +   D     GK     +P P + G++ AG+V  VG  V
Sbjct: 23  EEIEVAPPKAHEVRIKIVATGICRSDDHVVSGKLV---TPFPVILGHEAAGIVESVGEGV 79

Query: 162 KEFKEGDEV 170
              K GD+V
Sbjct: 80  TTVKPGDKV 88

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine (His-51), the ribose of NAD, a serine (Ser-48) , then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 373

>gnl|CDD|176260 cd08300, alcohol_DH_class_III, class III alcohol dehydrogenases

 Score = 42.6 bits (101), Expect = 2e-04
 Identities = 24/74 (32%), Positives = 34/74 (45%), Gaps = 12/74 (16%)

Query: 102 EKVTVPQVKEDQVLIKVVAAALNPVD-----GKRRQGKFKATDSPLPTVPGYDVAGVVVK 156
           E+V V   K  +V IK++A  +   D     G   +G F       P + G++ AG+V  
Sbjct: 18  EEVEVAPPKAGEVRIKILATGVCHTDAYTLSGADPEGLF-------PVILGHEGAGIVES 70

Query: 157 VGTQVKEFKEGDEV 170
           VG  V   K GD V
Sbjct: 71  VGEGVTSVKPGDHV 84

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 368

>gnl|CDD|176200 cd08238, sorbose_phosphate_red, L-sorbose-1-phosphate reductase

 Score = 42.4 bits (100), Expect = 3e-04
 Identities = 40/180 (22%), Positives = 77/180 (42%), Gaps = 28/180 (15%)

Query: 102 EKVTVPQVKEDQVLIKVVAAALNPVDGKR-RQG-KFKATDSPL---PTVPGYDVAGVVVK 156
           EK  +P++ +D++L++V++ +L     K   QG   K   + L   P + G++ AG ++K
Sbjct: 17  EKFELPEIADDEILVRVISDSLCFSTWKLALQGSDHKKVPNDLAKEPVILGHEFAGTILK 76

Query: 157 VGTQVK-EFKEGDEVYGDINEKALEGP-------KQFGSLAEYTAVEERLLA----PKPK 204
           VG + + ++K G            +GP          G LA Y  +   ++        +
Sbjct: 77  VGKKWQGKYKPGQRFVIQPALILPDGPSCPGYSYTYPGGLATYHIIPNEVMEQDCLLIYE 136

Query: 205 NLDFVQAAGL-PLA-IETAYEGLERT---------GFSAGKSILVLNGSGGVGSLVIQLA 253
              + +A+ + PL+ +  AY               G   G +  +L G+G +G + I  A
Sbjct: 137 GDGYAEASLVEPLSCVIGAYTANYHLQPGEYRHRMGIKPGGNTAILGGAGPMGLMAIDYA 196

L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 410

>gnl|CDD|176218 cd08256, Zn_ADH2, Alcohol dehydrogenases of the MDR family

 Score = 42.4 bits (100), Expect = 3e-04
 Identities = 50/219 (22%), Positives = 87/219 (39%), Gaps = 34/219 (15%)

Query: 102 EKVTVPQVKEDQVLIKVVAAALNPVDGKRRQG--KFKATDSPL-----PTVPGYDVAGVV 154
           E+V VP+    ++L+KV A  +   D K   G   F   ++       P +PG++  G V
Sbjct: 15  EEVPVPRPGPGEILVKVEACGICAGDIKCYHGAPSFWGDENQPPYVKPPMIPGHEFVGRV 74

Query: 155 VKVGTQVKE--FKEGDEV------------------YGDINEKALEGPKQ--FGSLAEYT 192
           V++G   +E   K GD V                  Y    +  L G +    G +AEY 
Sbjct: 75  VELGEGAEERGVKVGDRVISEQIVPCWNCRFCNRGQYWMCQKHDLYGFQNNVNGGMAEYM 134

Query: 193 AVEERLLAPK-PKNLDFVQAAGL-PLAIETAYEGLERTGFSAGKSILVLNGSGGVGSLVI 250
              +  +  K P ++    A  + PLA   A   ++R        ++VL G+G +G  +I
Sbjct: 135 RFPKEAIVHKVPDDIPPEDAILIEPLA--CALHAVDRANIKFD-DVVVLAGAGPLGLGMI 191

Query: 251 QLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDN 289
             A+       +        L   +  GAD+ ++  + +
Sbjct: 192 GAARLKNPKKLIVLDLKDERLALARKFGADVVLNPPEVD 230

This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 350

>gnl|CDD|176243 cd08283, FDH_like_1, Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1

 Score = 41.8 bits (99), Expect = 5e-04
 Identities = 82/340 (24%), Positives = 117/340 (34%), Gaps = 118/340 (34%)

Query: 152 GVVVKVGTQVKEFKEGDEV------------------YG---DINEKALE---------- 180
           GVV +VG +V+  K GD V                  Y    + N  A            
Sbjct: 64  GVVEEVGPEVRNLKVGDRVVVPFTIACGECFYCKRGLYSQCDNTNPSAEMAKLYGHAGAG 123

Query: 181 ---GPKQFGSL----AEYTAVEERLLAPK--------PKNLDFVQAAGLPLAIETAYEGL 225
                   G      AEY  V      P         P +L   +A  L   + T Y   
Sbjct: 124 IFGYSHLTGGYAGGQAEYVRV------PFADVGPFKIPDDLSDEKALFLSDILPTGYHAA 177

Query: 226 ERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSS--TRNLEFLKS-LGADLA 282
           E      G ++ V  G G VG    + AK   GA RV A      R LE  +S LGA+  
Sbjct: 178 ELAEVKPGDTVAVW-GCGPVGLFAARSAKL-LGAERVIAIDRVPER-LEMARSHLGAET- 233

Query: 283 IDYTKDNFEDLPEKF---------DVVYDAIG------------------QCDR------ 309
           I++ +   +D+ E           DV  DA+G                  + DR      
Sbjct: 234 INFEEV--DDVVEALRELTGGRGPDVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALRE 291

Query: 310 AVKAIKEGGTVVALTGAVTPPGFRFV---------VTSNG------EVLKKLNPYLESGK 354
           A++A+++GGT V++ G V                 +T           L +L   +ESG+
Sbjct: 292 AIQAVRKGGT-VSIIG-VYGGTVNKFPIGAAMNKGLTLRMGQTHVQRYLPRLLELIESGE 349

Query: 355 VKP--IIDPKGPFPFSQVVEAFSYIETNKATG--KVVIHP 390
           + P  II  +   P     EA+   +  K  G  KVV+ P
Sbjct: 350 LDPSFIITHR--LPLEDAPEAYKIFD-KKEDGCIKVVLKP 386

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 386

>gnl|CDD|176246 cd08286, FDH_like_ADH2, formaldehyde dehydrogenase (FDH)-like

 Score = 41.5 bits (98), Expect = 5e-04
 Identities = 62/275 (22%), Positives = 106/275 (38%), Gaps = 51/275 (18%)

Query: 84  MKAWLYGEYGGVDVLKFDEKVTVPQVKE-DQVLIKVVAAALNPVDGKRRQGKFKATDSPL 142
           MKA +Y    G   + ++++   P ++E    ++K++   +   D    +G        +
Sbjct: 1   MKALVYH---GPGKISWEDRPK-PTIQEPTDAIVKMLKTTICGTDLHILKGD-------V 49

Query: 143 PTVP-----GYDVAGVVVKVGTQVKEFKEGDEVY--------------GDINEKALEGPK 183
           PTV      G++  GVV +VG+ V  FK GD V                 +      G  
Sbjct: 50  PTVTPGRILGHEGVGVVEEVGSAVTNFKVGDRVLISCISSCGTCGYCRKGLYSHCESGGW 109

Query: 184 QFGSL-----AEYTAV--EERLLAPKPKNLDFVQAAGLPLAIETAYEGLERTGFSAGKSI 236
             G+L     AEY  +   +  L   P+ +D   A  L   + T YE     G       
Sbjct: 110 ILGNLIDGTQAEYVRIPHADNSLYKLPEGVDEEAAVMLSDILPTGYECGVLNGKVKPGDT 169

Query: 237 LVLNGSGGVGSLVIQLAKQVFGASRVAA--TSSTRNLEFLKSLGADLAIDYTKDNFEDL- 293
           + + G+G VG   +  A Q++  S++        R LE  K LGA   ++  K +  +  
Sbjct: 170 VAIVGAGPVGLAALLTA-QLYSPSKIIMVDLDDNR-LEVAKKLGATHTVNSAKGDAIEQV 227

Query: 294 -----PEKFDVVYDAIG---QCDRAVKAIKEGGTV 320
                    DVV +A+G     +   + +  GG +
Sbjct: 228 LELTDGRGVDVVIEAVGIPATFELCQELVAPGGHI 262

This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 345

>gnl|CDD|131865 TIGR02818, adh_III_F_hyde, S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase

 Score = 41.4 bits (97), Expect = 6e-04
 Identities = 56/223 (25%), Positives = 82/223 (36%), Gaps = 53/223 (23%)

Query: 102 EKVTVPQVKEDQVLIKVVAAALNPVD-----GKRRQGKFKATDSPLPTVPGYDVAGVVVK 156
           E+V V   ++ +VL+++VA  +   D     G   +G F       P + G++ AG+V  
Sbjct: 17  EEVDVEMPQKGEVLVRIVATGVCHTDAFTLSGADPEGVF-------PVILGHEGAGIVEA 69

Query: 157 VGTQVKEFKEGDEVY---------------GDIN---------EKAL--EGPKQF----- 185
           VG  V   K GD V                G  N          K L  +G  +F     
Sbjct: 70  VGEGVTSVKVGDHVIPLYTAECGECKFCLSGKTNLCVAVRETQGKGLMPDGTSRFSKDGQ 129

Query: 186 --------GSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLERTGFSAGKSIL 237
                    + +EYT V E  LA         +   L   + T    +  T        +
Sbjct: 130 PIYHYMGCSTFSEYTVVPEISLAKINPAAPLEEVCLLGCGVTTGIGAVLNTAKVEEGDTV 189

Query: 238 VLNGSGGVGSLVIQLAKQVFGASRVAATS-STRNLEFLKSLGA 279
            + G GG+G  VIQ A+    ASR+ A   +    E  K LGA
Sbjct: 190 AVFGLGGIGLSVIQGARMA-KASRIIAIDINPAKFELAKKLGA 231

The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols [Cellular processes, Detoxification, Energy metabolism, Fermentation]. Length = 368

>gnl|CDD|132492 TIGR03451, mycoS_dep_FDH, S-(hydroxymethyl)mycothiol dehydrogenase

 Score = 40.6 bits (95), Expect = 0.001
 Identities = 74/279 (26%), Positives = 106/279 (37%), Gaps = 66/279 (23%)

Query: 102 EKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQV 161
           E + VP     +V++ + A  +   D   R+G     +   P + G++ AGVV  VG  V
Sbjct: 17  ETIVVPDPGPGEVIVDIQACGVCHTDLHYREG---GINDEFPFLLGHEAAGVVEAVGEGV 73

Query: 162 KEFKEGDEVYGDINEKALEG---------PKQ------------------------FGSL 188
            +   GD V   +N +A+ G         P                           G+ 
Sbjct: 74  TDVAPGDYVV--LNWRAVCGQCRACKRGRPWYCFDTHNATQKMTLTDGTELSPALGIGAF 131

Query: 189 AEYTAVEERLLAPKPKNLDFVQA--------AGLPLAIETAYEGLERTGFSAGKSILVLN 240
           AE T V            D   A        AGL  A+ T        G   G S+ V+ 
Sbjct: 132 AEKTLVHAGQCTKVDPAADPAAAGLLGCGVMAGLGAAVNTG-------GVKRGDSVAVI- 183

Query: 241 GSGGVGSLVIQLAKQVFGASRVAATS-STRNLEFLKSLGADLAIDYTKDN----FEDLPE 295
           G GGVG   I  A  + GAS++ A     R LE+ +  GA   ++ +  +       L  
Sbjct: 184 GCGGVGDAAIAGAA-LAGASKIIAVDIDDRKLEWAREFGATHTVNSSGTDPVEAIRALTG 242

Query: 296 KF--DVVYDAIGQCD---RAVKAIKEGGTVVALTGAVTP 329
            F  DVV DA+G+ +   +A  A    GTVV L G  TP
Sbjct: 243 GFGADVVIDAVGRPETYKQAFYARDLAGTVV-LVGVPTP 280

Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione [Cellular processes, Detoxification]. Length = 358

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	392
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	100.0
COG0604	326	Qor NADPH:quinone reductase and related Zn-depende	100.0
KOG0024	354	consensus Sorbitol dehydrogenase [Secondary metabo	100.0
KOG0023	360	consensus Alcohol dehydrogenase, class V [Secondar	100.0
KOG1197	336	consensus Predicted quinone oxidoreductase [Energy	100.0
COG1062	366	AdhC Zn-dependent alcohol dehydrogenases, class II	100.0
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	100.0
cd08239	339	THR_DH_like L-threonine dehydrogenase (TDH)-like.	100.0
cd08281	371	liver_ADH_like1 Zinc-dependent alcohol dehydrogena	100.0
PLN02740	381	Alcohol dehydrogenase-like	100.0
TIGR02822	329	adh_fam_2 zinc-binding alcohol dehydrogenase famil	100.0
TIGR03451	358	mycoS_dep_FDH mycothiol-dependent formaldehyde deh	100.0
PLN02586	360	probable cinnamyl alcohol dehydrogenase	100.0
TIGR02818	368	adh_III_F_hyde S-(hydroxymethyl)glutathione dehydr	100.0
TIGR01202	308	bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl	100.0
PLN02178	375	cinnamyl-alcohol dehydrogenase	100.0
TIGR02819	393	fdhA_non_GSH formaldehyde dehydrogenase, glutathio	100.0
cd08300	368	alcohol_DH_class_III class III alcohol dehydrogena	100.0
KOG0022	375	consensus Alcohol dehydrogenase, class III [Second	100.0
PLN02827	378	Alcohol dehydrogenase-like	100.0
cd08291	324	ETR_like_1 2-enoyl thioester reductase (ETR) like	100.0
cd08301	369	alcohol_DH_plants Plant alcohol dehydrogenase. NAD	100.0
PRK10309	347	galactitol-1-phosphate dehydrogenase; Provisional	100.0
PLN02514	357	cinnamyl-alcohol dehydrogenase	100.0
cd08237	341	ribitol-5-phosphate_DH ribitol-5-phosphate dehydro	100.0
TIGR03201	349	dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co	100.0
cd08238	410	sorbose_phosphate_red L-sorbose-1-phosphate reduct	100.0
cd08277	365	liver_alcohol_DH_like Liver alcohol dehydrogenase.	100.0
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	100.0
cd08233	351	butanediol_DH_like (2R,3R)-2,3-butanediol dehydrog	100.0
cd08292	324	ETR_like_2 2-enoyl thioester reductase (ETR) like	100.0
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	100.0
cd08296	333	CAD_like Cinnamyl alcohol dehydrogenases (CAD). Ci	100.0
PLN03154	348	putative allyl alcohol dehydrogenase; Provisional	100.0
cd08293	345	PTGR2 Prostaglandin reductase. Prostaglandins and	100.0
cd08231	361	MDR_TM0436_like Hypothetical enzyme TM0436 resembl	100.0
cd08295	338	double_bond_reductase_like Arabidopsis alkenal dou	100.0
cd08294	329	leukotriene_B4_DH_like 13-PGR is a bifunctional en	100.0
PRK10754	327	quinone oxidoreductase, NADPH-dependent; Provision	100.0
KOG0025	354	consensus Zn2+-binding dehydrogenase (nuclear rece	100.0
cd08274	350	MDR9 Medium chain dehydrogenases/reductase (MDR)/z	100.0
PRK10083	339	putative oxidoreductase; Provisional	100.0
cd08285	351	NADP_ADH NADP(H)-dependent alcohol dehydrogenases.	100.0
TIGR02825	325	B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15	100.0
cd05284	340	arabinose_DH_like D-arabinose dehydrogenase. This	100.0
cd08246	393	crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-	100.0
TIGR02817	336	adh_fam_1 zinc-binding alcohol dehydrogenase famil	100.0
cd08283	386	FDH_like_1 Glutathione-dependent formaldehyde dehy	100.0
TIGR01751	398	crot-CoA-red crotonyl-CoA reductase. The enzyme mo	100.0
KOG1198	347	consensus Zinc-binding oxidoreductase [Energy prod	100.0
cd08244	324	MDR_enoyl_red Possible enoyl reductase. Member ide	100.0
cd08262	341	Zn_ADH8 Alcohol dehydrogenases of the MDR family.	100.0
cd08256	350	Zn_ADH2 Alcohol dehydrogenases of the MDR family.	100.0
cd08270	305	MDR4 Medium chain dehydrogenases/reductase (MDR)/z	100.0
PTZ00354	334	alcohol dehydrogenase; Provisional	100.0
cd05283	337	CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnam	100.0
cd08290	341	ETR 2-enoyl thioester reductase (ETR). 2-enoyl thi	100.0
cd05278	347	FDH_like Formaldehyde dehydrogenases. Formaldehyde	100.0
PRK09422	338	ethanol-active dehydrogenase/acetaldehyde-active r	100.0
cd08278	365	benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Be	100.0
cd08297	341	CAD3 Cinnamyl alcohol dehydrogenases (CAD). These	100.0
cd08250	329	Mgc45594_like Mgc45594 gene product and other MDR	100.0
cd08286	345	FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-lik	100.0
cd08240	350	6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehy	100.0
cd08242	319	MDR_like Medium chain dehydrogenases/reductase (MD	100.0
cd08254	338	hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo	100.0
PRK13771	334	putative alcohol dehydrogenase; Provisional	100.0
cd08263	367	Zn_ADH10 Alcohol dehydrogenases of the MDR family.	100.0
cd08299	373	alcohol_DH_class_I_II_IV class I, II, IV alcohol d	100.0
cd08284	344	FDH_like_2 Glutathione-dependent formaldehyde dehy	100.0
cd08235	343	iditol_2_DH_like L-iditol 2-dehydrogenase. Putativ	100.0
cd08259	332	Zn_ADH5 Alcohol dehydrogenases of the MDR family.	100.0
cd08282	375	PFDH_like Pseudomonas putida aldehyde-dismutating	100.0
cd05280	325	MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone	100.0
cd08260	345	Zn_ADH6 Alcohol dehydrogenases of the MDR family.	100.0
cd08249	339	enoyl_reductase_like enoyl_reductase_like. Member	100.0
cd05279	365	Zn_ADH1 Liver alcohol dehydrogenase and related zi	100.0
cd08261	337	Zn_ADH7 Alcohol dehydrogenases of the MDR family.	100.0
cd08287	345	FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-lik	100.0
cd08298	329	CAD2 Cinnamyl alcohol dehydrogenases (CAD). These	100.0
cd08279	363	Zn_ADH_class_III Class III alcohol dehydrogenase.	100.0
cd08289	326	MDR_yhfp_like Yhfp putative quinone oxidoreductase	100.0
cd08248	350	RTN4I1 Human Reticulon 4 Interacting Protein 1. Hu	100.0
TIGR02823	323	oxido_YhdH putative quinone oxidoreductase, YhdH/Y	100.0
cd08243	320	quinone_oxidoreductase_like_1 Quinone oxidoreducta	100.0
cd08234	334	threonine_DH_like L-threonine dehydrogenase. L-thr	100.0
cd08252	336	AL_MDR Arginate lyase and other MDR family members	100.0
cd05282	323	ETR_like 2-enoyl thioester reductase-like. 2-enoyl	100.0
cd08236	343	sugar_DH NAD(P)-dependent sugar dehydrogenases. Th	100.0
cd08276	336	MDR7 Medium chain dehydrogenases/reductase (MDR)/z	100.0
PRK05396	341	tdh L-threonine 3-dehydrogenase; Validated	100.0
cd08232	339	idonate-5-DH L-idonate 5-dehydrogenase. L-idonate	100.0
cd08266	342	Zn_ADH_like1 Alcohol dehydrogenases of the MDR fam	100.0
cd08264	325	Zn_ADH_like2 Alcohol dehydrogenases of the MDR fam	100.0
cd08288	324	MDR_yhdh Yhdh putative quinone oxidoreductases. Yh	100.0
cd08272	326	MDR6 Medium chain dehydrogenases/reductase (MDR)/z	100.0
cd08273	331	MDR8 Medium chain dehydrogenases/reductase (MDR)/z	100.0
cd05281	341	TDH Threonine dehydrogenase. L-threonine dehydroge	100.0
cd05289	309	MDR_like_2 alcohol dehydrogenase and quinone reduc	100.0
cd05285	343	sorbitol_DH Sorbitol dehydrogenase. Sorbitol and a	100.0
cd08253	325	zeta_crystallin Zeta-crystallin with NADP-dependen	100.0
cd05286	320	QOR2 Quinone oxidoreductase (QOR). Quinone oxidore	100.0
PLN02702	364	L-idonate 5-dehydrogenase	100.0
cd08265	384	Zn_ADH3 Alcohol dehydrogenases of the MDR family.	100.0
cd08247	352	AST1_like AST1 is a cytoplasmic protein associated	100.0
cd05276	323	p53_inducible_oxidoreductase PIG3 p53-inducible qu	100.0
cd08245	330	CAD Cinnamyl alcohol dehydrogenases (CAD) and rela	100.0
cd08269	312	Zn_ADH9 Alcohol dehydrogenases of the MDR family.	100.0
TIGR00692	340	tdh L-threonine 3-dehydrogenase. E. coli His-90 mo	100.0
COG2130	340	Putative NADP-dependent oxidoreductases [General f	100.0
cd08271	325	MDR5 Medium chain dehydrogenases/reductase (MDR)/z	100.0
cd05288	329	PGDH Prostaglandin dehydrogenases. Prostaglandins	100.0
cd08251	303	polyketide_synthase polyketide synthase. Polyketid	100.0
cd08267	319	MDR1 Medium chain dehydrogenases/reductase (MDR)/z	100.0
cd08268	328	MDR2 Medium chain dehydrogenases/reductase (MDR)/z	100.0
TIGR02824	325	quinone_pig3 putative NAD(P)H quinone oxidoreducta	100.0
cd08275	337	MDR3 Medium chain dehydrogenases/reductase (MDR)/z	100.0
cd08241	323	QOR1 Quinone oxidoreductase (QOR). QOR catalyzes t	100.0
TIGR03366	280	HpnZ_proposed putative phosphonate catabolism asso	99.97
cd08258	306	Zn_ADH4 Alcohol dehydrogenases of the MDR family.	99.97
cd05195	293	enoyl_red enoyl reductase of polyketide synthase.	99.97
smart00829	288	PKS_ER Enoylreductase. Enoylreductase in Polyketid	99.97
cd05188	271	MDR Medium chain reductase/dehydrogenase (MDR)/zin	99.96
cd08255	277	2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_	99.95
KOG1196	343	consensus Predicted NAD-dependent oxidoreductase [	99.95
KOG1202	2376	consensus Animal-type fatty acid synthase and rela	99.94
PF08240	109	ADH_N: Alcohol dehydrogenase GroES-like domain; In	99.76
PF00107	130	ADH_zinc_N: Zinc-binding dehydrogenase; InterPro:	99.43
PF13602	127	ADH_zinc_N_2: Zinc-binding dehydrogenase; PDB: 3TQ	99.31
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	99.26
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	99.04
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	98.42
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	98.34
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	98.24
PRK08306	296	dipicolinate synthase subunit A; Reviewed	98.11
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	98.07
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	98.03
PLN02494	477	adenosylhomocysteinase	97.9
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	97.67
PTZ00075	476	Adenosylhomocysteinase; Provisional	97.64
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	97.62
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	97.58
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	97.51
PRK08324	681	short chain dehydrogenase; Validated	97.4
TIGR01035	417	hemA glutamyl-tRNA reductase. This enzyme, togethe	97.38
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	97.37
PRK00045	423	hemA glutamyl-tRNA reductase; Reviewed	97.32
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	97.31
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	97.28
PRK05786	238	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	97.25
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	97.24
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	97.23
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	97.23
PF11017	314	DUF2855: Protein of unknown function (DUF2855); In	97.17
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	97.14
PRK14967	223	putative methyltransferase; Provisional	97.12
COG3967	245	DltE Short-chain dehydrogenase involved in D-alani	97.07
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	97.05
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	97.0
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	96.96
PLN03209	576	translocon at the inner envelope of chloroplast su	96.94
PRK05993	277	short chain dehydrogenase; Provisional	96.93
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	96.93
PRK05693	274	short chain dehydrogenase; Provisional	96.93
PRK12742	237	oxidoreductase; Provisional	96.93
COG4221	246	Short-chain alcohol dehydrogenase of unknown speci	96.92
COG0300	265	DltE Short-chain dehydrogenases of various substra	96.76
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	96.76
KOG1205	282	consensus Predicted dehydrogenase [Secondary metab	96.75
PF13460	183	NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X	96.75
PRK06182	273	short chain dehydrogenase; Validated	96.72
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	96.71
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	96.66
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	96.55
PF00670	162	AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase	96.52
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	96.48
PRK08317	241	hypothetical protein; Provisional	96.37
PRK07060	245	short chain dehydrogenase; Provisional	96.34
PRK08339	263	short chain dehydrogenase; Provisional	96.28
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	96.27
PRK06139	330	short chain dehydrogenase; Provisional	96.26
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	96.26
PRK08265	261	short chain dehydrogenase; Provisional	96.19
PRK07109	334	short chain dehydrogenase; Provisional	96.18
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	96.18
KOG1201	300	consensus Hydroxysteroid 17-beta dehydrogenase 11	96.18
PRK06057	255	short chain dehydrogenase; Provisional	96.18
PRK05872	296	short chain dehydrogenase; Provisional	96.15
PRK07574	385	formate dehydrogenase; Provisional	96.14
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	96.13
PRK06500	249	short chain dehydrogenase; Provisional	96.11
CHL00194	317	ycf39 Ycf39; Provisional	96.1
PLN03139	386	formate dehydrogenase; Provisional	96.1
COG2910	211	Putative NADH-flavin reductase [General function p	96.09
PRK06949	258	short chain dehydrogenase; Provisional	96.05
PRK07231	251	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.02
PRK12367	245	short chain dehydrogenase; Provisional	95.97
PRK08261	450	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	95.96
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	95.94
PRK06200	263	2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrog	95.92
PRK03369	488	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.9
PRK06484	520	short chain dehydrogenase; Validated	95.9
PRK07832	272	short chain dehydrogenase; Provisional	95.89
PRK07806	248	short chain dehydrogenase; Provisional	95.89
PRK08177	225	short chain dehydrogenase; Provisional	95.89
PRK05866	293	short chain dehydrogenase; Provisional	95.88
PRK07831	262	short chain dehydrogenase; Provisional	95.87
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	95.85
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	95.83
KOG1270	282	consensus Methyltransferases [Coenzyme transport a	95.83
PRK06128	300	oxidoreductase; Provisional	95.83
PRK07814	263	short chain dehydrogenase; Provisional	95.82
PRK08261	450	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	95.8
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	95.79
PRK07825	273	short chain dehydrogenase; Provisional	95.77
PRK12939	250	short chain dehydrogenase; Provisional	95.74
smart00846	149	Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase,	95.72
PRK00258	278	aroE shikimate 5-dehydrogenase; Reviewed	95.68
PRK13394	262	3-hydroxybutyrate dehydrogenase; Provisional	95.68
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	95.67
PF01262	168	AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal	95.67
TIGR03325	262	BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydro	95.66
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	95.65
PRK10258	251	biotin biosynthesis protein BioC; Provisional	95.63
PLN02244	340	tocopherol O-methyltransferase	95.62
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	95.62
PRK07677	252	short chain dehydrogenase; Provisional	95.61
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	95.56
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	95.56
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	95.55
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	95.55
PRK06196	315	oxidoreductase; Provisional	95.55
PRK06505	271	enoyl-(acyl carrier protein) reductase; Provisiona	95.53
PRK12829	264	short chain dehydrogenase; Provisional	95.53
KOG1014	312	consensus 17 beta-hydroxysteroid dehydrogenase typ	95.53
PLN02233	261	ubiquinone biosynthesis methyltransferase	95.51
PRK05867	253	short chain dehydrogenase; Provisional	95.49
PRK06398	258	aldose dehydrogenase; Validated	95.45
PRK08217	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	95.45
PRK09291	257	short chain dehydrogenase; Provisional	95.44
PRK13243	333	glyoxylate reductase; Reviewed	95.41
PRK05854	313	short chain dehydrogenase; Provisional	95.37
PRK07062	265	short chain dehydrogenase; Provisional	95.36
PRK06101	240	short chain dehydrogenase; Provisional	95.32
PRK06180	277	short chain dehydrogenase; Provisional	95.31
PRK06841	255	short chain dehydrogenase; Provisional	95.31
TIGR01832	248	kduD 2-deoxy-D-gluconate 3-dehydrogenase. This mod	95.29
PF01118	121	Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi	95.28
PRK07478	254	short chain dehydrogenase; Provisional	95.27
PRK07533	258	enoyl-(acyl carrier protein) reductase; Provisiona	95.27
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	95.26
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	95.26
PRK07904	253	short chain dehydrogenase; Provisional	95.26
PRK00216	239	ubiE ubiquinone/menaquinone biosynthesis methyltra	95.24
TIGR01532	325	E4PD_g-proteo D-erythrose-4-phosphate dehydrogenas	95.24
PRK12429	258	3-hydroxybutyrate dehydrogenase; Provisional	95.23
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	95.22
PRK09072	263	short chain dehydrogenase; Provisional	95.21
PRK07326	237	short chain dehydrogenase; Provisional	95.2
PRK06194	287	hypothetical protein; Provisional	95.16
PF08241	95	Methyltransf_11: Methyltransferase domain; InterPr	95.14
PRK12828	239	short chain dehydrogenase; Provisional	95.1
PF03435	386	Saccharop_dh: Saccharopine dehydrogenase ; InterPr	95.08
TIGR01809	282	Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO	95.08
PRK08017	256	oxidoreductase; Provisional	95.07
PRK08415	274	enoyl-(acyl carrier protein) reductase; Provisiona	95.06
PRK07576	264	short chain dehydrogenase; Provisional	95.06
PRK12747	252	short chain dehydrogenase; Provisional	95.06
PLN02928	347	oxidoreductase family protein	95.04
PRK07453	322	protochlorophyllide oxidoreductase; Validated	95.04
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	95.03
PRK07063	260	short chain dehydrogenase; Provisional	95.03
COG0169	283	AroE Shikimate 5-dehydrogenase [Amino acid transpo	95.03
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	95.01
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	95.01
PRK08340	259	glucose-1-dehydrogenase; Provisional	95.01
PRK04148	134	hypothetical protein; Provisional	95.01
PRK12937	245	short chain dehydrogenase; Provisional	95.0
PRK14175	286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.99
PRK06603	260	enoyl-(acyl carrier protein) reductase; Provisiona	94.97
PRK06701	290	short chain dehydrogenase; Provisional	94.95
PRK08628	258	short chain dehydrogenase; Provisional	94.93
PLN03075	296	nicotianamine synthase; Provisional	94.93
COG1052	324	LdhA Lactate dehydrogenase and related dehydrogena	94.92
PRK08862	227	short chain dehydrogenase; Provisional	94.92
PRK07985	294	oxidoreductase; Provisional	94.9
PRK06125	259	short chain dehydrogenase; Provisional	94.88
PRK08643	256	acetoin reductase; Validated	94.88
PRK05717	255	oxidoreductase; Validated	94.86
PRK07424	406	bifunctional sterol desaturase/short chain dehydro	94.83
PRK06197	306	short chain dehydrogenase; Provisional	94.83
PRK05876	275	short chain dehydrogenase; Provisional	94.83
PRK08690	261	enoyl-(acyl carrier protein) reductase; Provisiona	94.83
PRK07523	255	gluconate 5-dehydrogenase; Provisional	94.81
PRK07774	250	short chain dehydrogenase; Provisional	94.8
PRK15469	312	ghrA bifunctional glyoxylate/hydroxypyruvate reduc	94.79
PRK07454	241	short chain dehydrogenase; Provisional	94.77
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	94.71
PRK12823	260	benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylat	94.7
PRK08213	259	gluconate 5-dehydrogenase; Provisional	94.69
PLN00141	251	Tic62-NAD(P)-related group II protein; Provisional	94.69
PF08704	247	GCD14: tRNA methyltransferase complex GCD14 subuni	94.68
TIGR00507	270	aroE shikimate 5-dehydrogenase. This model finds p	94.68
PRK07035	252	short chain dehydrogenase; Provisional	94.68
PRK13403	335	ketol-acid reductoisomerase; Provisional	94.66
PRK08264	238	short chain dehydrogenase; Validated	94.66
PRK06483	236	dihydromonapterin reductase; Provisional	94.65
PRK08277	278	D-mannonate oxidoreductase; Provisional	94.65
PRK06720	169	hypothetical protein; Provisional	94.65
PRK08589	272	short chain dehydrogenase; Validated	94.64
PRK12550	272	shikimate 5-dehydrogenase; Reviewed	94.61
PRK04266	226	fibrillarin; Provisional	94.6
PRK07024	257	short chain dehydrogenase; Provisional	94.6
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	94.6
PRK06181	263	short chain dehydrogenase; Provisional	94.6
KOG0725	270	consensus Reductases with broad range of substrate	94.59
PLN02490	340	MPBQ/MSBQ methyltransferase	94.58
PRK11207	197	tellurite resistance protein TehB; Provisional	94.57
PRK06114	254	short chain dehydrogenase; Provisional	94.57
PRK06079	252	enoyl-(acyl carrier protein) reductase; Provisiona	94.55
PRK06914	280	short chain dehydrogenase; Provisional	94.55
PRK08410	311	2-hydroxyacid dehydrogenase; Provisional	94.54
PLN02253	280	xanthoxin dehydrogenase	94.54
PRK12384	259	sorbitol-6-phosphate dehydrogenase; Provisional	94.54
PRK08159	272	enoyl-(acyl carrier protein) reductase; Provisiona	94.53
PRK05884	223	short chain dehydrogenase; Provisional	94.53
PRK08085	254	gluconate 5-dehydrogenase; Provisional	94.52
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	94.52
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	94.5
PRK13255	218	thiopurine S-methyltransferase; Reviewed	94.46
PRK12481	251	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	94.44
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	94.43
TIGR01777	292	yfcH conserved hypothetical protein TIGR01777. Thi	94.43
PRK08251	248	short chain dehydrogenase; Provisional	94.43
PRK08267	260	short chain dehydrogenase; Provisional	94.42
PRK08655	437	prephenate dehydrogenase; Provisional	94.41
COG0111	324	SerA Phosphoglycerate dehydrogenase and related de	94.41
PRK08263	275	short chain dehydrogenase; Provisional	94.41
PRK06172	253	short chain dehydrogenase; Provisional	94.4
PRK08618	325	ornithine cyclodeaminase; Validated	94.4
PRK09242	257	tropinone reductase; Provisional	94.39
PRK06077	252	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	94.39
PRK06953	222	short chain dehydrogenase; Provisional	94.38
PRK14027	283	quinate/shikimate dehydrogenase; Provisional	94.37
PRK14191	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.36
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	94.35
PRK06482	276	short chain dehydrogenase; Provisional	94.33
PRK05875	276	short chain dehydrogenase; Provisional	94.33
PRK06138	252	short chain dehydrogenase; Provisional	94.32
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	94.3
TIGR03206	250	benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydr	94.29
PRK06198	260	short chain dehydrogenase; Provisional	94.27
TIGR00438	188	rrmJ cell division protein FtsJ.	94.25
PRK12746	254	short chain dehydrogenase; Provisional	94.16
PRK06935	258	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	94.16
PRK07856	252	short chain dehydrogenase; Provisional	94.15
PRK14192	283	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.15
KOG0069	336	consensus Glyoxylate/hydroxypyruvate reductase (D-	94.13
PRK06719	157	precorrin-2 dehydrogenase; Validated	94.13
PRK14189	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.12
PRK06463	255	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	94.07
PRK08303	305	short chain dehydrogenase; Provisional	94.05
PRK06179	270	short chain dehydrogenase; Provisional	94.01
KOG1199	260	consensus Short-chain alcohol dehydrogenase/3-hydr	94.0
PRK07067	257	sorbitol dehydrogenase; Provisional	93.98
TIGR01934	223	MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis	93.98
PRK10538	248	malonic semialdehyde reductase; Provisional	93.96
KOG1208	314	consensus Dehydrogenases with different specificit	93.9
PRK13940	414	glutamyl-tRNA reductase; Provisional	93.89
cd05212	140	NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom	93.89
PRK06113	255	7-alpha-hydroxysteroid dehydrogenase; Validated	93.89
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	93.87
PRK08993	253	2-deoxy-D-gluconate 3-dehydrogenase; Validated	93.84
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	93.83
PRK08226	263	short chain dehydrogenase; Provisional	93.83
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	93.83
PRK12743	256	oxidoreductase; Provisional	93.82
PRK06124	256	gluconate 5-dehydrogenase; Provisional	93.82
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.82
PRK07791	286	short chain dehydrogenase; Provisional	93.81
TIGR00537	179	hemK_rel_arch HemK-related putative methylase. The	93.79
PRK07074	257	short chain dehydrogenase; Provisional	93.78
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	93.77
PRK14194	301	bifunctional 5,10-methylene-tetrahydrofolate dehyd	93.76
TIGR02632	676	RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alc	93.76
PLN02336	475	phosphoethanolamine N-methyltransferase	93.73
PRK07984	262	enoyl-(acyl carrier protein) reductase; Provisiona	93.72
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	93.72
PLN02214	342	cinnamoyl-CoA reductase	93.72
PRK13256	226	thiopurine S-methyltransferase; Reviewed	93.71
PRK06484	520	short chain dehydrogenase; Validated	93.7
PRK07402	196	precorrin-6B methylase; Provisional	93.69
PRK14901	434	16S rRNA methyltransferase B; Provisional	93.66
PRK15409	323	bifunctional glyoxylate/hydroxypyruvate reductase	93.65
PRK07417	279	arogenate dehydrogenase; Reviewed	93.65
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	93.65
PLN02780	320	ketoreductase/ oxidoreductase	93.64
PF02670	129	DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate re	93.64
PRK05653	246	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	93.63
PRK07102	243	short chain dehydrogenase; Provisional	93.59
PRK10901	427	16S rRNA methyltransferase B; Provisional	93.58
PRK14176	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	93.56
PRK06932	314	glycerate dehydrogenase; Provisional	93.54
PRK12548	289	shikimate 5-dehydrogenase; Provisional	93.53
PF02882	160	THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl	93.5
PRK06523	260	short chain dehydrogenase; Provisional	93.47
PRK12936	245	3-ketoacyl-(acyl-carrier-protein) reductase NodG;	93.44
PLN02396	322	hexaprenyldihydroxybenzoate methyltransferase	93.43
PRK05650	270	short chain dehydrogenase; Provisional	93.42
PRK08594	257	enoyl-(acyl carrier protein) reductase; Provisiona	93.42
PRK07775	274	short chain dehydrogenase; Provisional	93.4
PRK12826	251	3-ketoacyl-(acyl-carrier-protein) reductase; Revie	93.4
PRK12480	330	D-lactate dehydrogenase; Provisional	93.4
PRK13581	526	D-3-phosphoglycerate dehydrogenase; Provisional	93.39
PRK07097	265	gluconate 5-dehydrogenase; Provisional	93.37
PRK07340	304	ornithine cyclodeaminase; Validated	93.36
PLN02657	390	3,8-divinyl protochlorophyllide a 8-vinyl reductas	93.36
PRK08063	250	enoyl-(acyl carrier protein) reductase; Provisiona	93.35
PLN00203	519	glutamyl-tRNA reductase	93.35
PLN02989	325	cinnamyl-alcohol dehydrogenase family protein	93.35
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	93.35
KOG1210	331	consensus Predicted 3-ketosphinganine reductase [S	93.34
PRK06436	303	glycerate dehydrogenase; Provisional	93.32
TIGR01327	525	PGDH D-3-phosphoglycerate dehydrogenase. This mode	93.28
PF05368	233	NmrA: NmrA-like family; InterPro: IPR008030 NmrA i	93.28
PLN02986	322	cinnamyl-alcohol dehydrogenase family protein	93.22
PRK14903	431	16S rRNA methyltransferase B; Provisional	93.18
PRK06487	317	glycerate dehydrogenase; Provisional	93.18
TIGR01289	314	LPOR light-dependent protochlorophyllide reductase	93.13
PRK08703	239	short chain dehydrogenase; Provisional	93.13
PRK10792	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	93.12
PRK06997	260	enoyl-(acyl carrier protein) reductase; Provisiona	93.1
PF01113	124	DapB_N: Dihydrodipicolinate reductase, N-terminus;	93.05
PRK12938	246	acetyacetyl-CoA reductase; Provisional	92.97
PRK06940	275	short chain dehydrogenase; Provisional	92.96
PRK07890	258	short chain dehydrogenase; Provisional	92.93
PRK08278	273	short chain dehydrogenase; Provisional	92.89
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	92.88
PF00106	167	adh_short: short chain dehydrogenase alcohol dehyd	92.86
PRK08219	227	short chain dehydrogenase; Provisional	92.85
PRK05855	582	short chain dehydrogenase; Validated	92.8
PRK14874	334	aspartate-semialdehyde dehydrogenase; Provisional	92.79
PRK05565	247	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	92.77
PRK06171	266	sorbitol-6-phosphate 2-dehydrogenase; Provisional	92.76
PLN02306	386	hydroxypyruvate reductase	92.73
COG0031	300	CysK Cysteine synthase [Amino acid transport and m	92.69
PRK14618	328	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	92.63
PLN00016	378	RNA-binding protein; Provisional	92.62
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	92.58
PRK08416	260	7-alpha-hydroxysteroid dehydrogenase; Provisional	92.57
TIGR00446	264	nop2p NOL1/NOP2/sun family putative RNA methylase.	92.55
PRK14902	444	16S rRNA methyltransferase B; Provisional	92.54
PRK14188	296	bifunctional 5,10-methylene-tetrahydrofolate dehyd	92.53
PRK10669	558	putative cation:proton antiport protein; Provision	92.5
PRK07370	258	enoyl-(acyl carrier protein) reductase; Validated	92.5
PRK09186	256	flagellin modification protein A; Provisional	92.49
PLN02896	353	cinnamyl-alcohol dehydrogenase	92.49
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	92.48
PRK14806	735	bifunctional cyclohexadienyl dehydrogenase/ 3-phos	92.46
KOG1209	289	consensus 1-Acyl dihydroxyacetone phosphate reduct	92.36
PRK00436	343	argC N-acetyl-gamma-glutamyl-phosphate reductase;	92.36
COG2084	286	MmsB 3-hydroxyisobutyrate dehydrogenase and relate	92.3
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	92.29
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	92.27
TIGR03589	324	PseB UDP-N-acetylglucosamine 4,6-dehydratase. This	92.23
PRK05599	246	hypothetical protein; Provisional	92.2
PRK08945	247	putative oxoacyl-(acyl carrier protein) reductase;	92.2
PRK12749	288	quinate/shikimate dehydrogenase; Reviewed	92.18
TIGR03466	328	HpnA hopanoid-associated sugar epimerase. The sequ	92.18
PRK07792	306	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	92.17
PRK07578	199	short chain dehydrogenase; Provisional	92.15
PRK14190	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	92.13
cd01079	197	NAD_bind_m-THF_DH NAD binding domain of methylene-	92.05
PRK14173	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	92.05
TIGR01546	333	GAPDH-II_archae glyceraldehyde-3-phosphate dehydro	92.04
PLN02516	299	methylenetetrahydrofolate dehydrogenase (NADP+)	92.02
COG1090	297	Predicted nucleoside-diphosphate sugar epimerase [	92.01
PRK08936	261	glucose-1-dehydrogenase; Provisional	91.99
PRK07889	256	enoyl-(acyl carrier protein) reductase; Provisiona	91.99
COG4122	219	Predicted O-methyltransferase [General function pr	91.98
PRK15451	247	tRNA cmo(5)U34 methyltransferase; Provisional	91.98
PRK05447	385	1-deoxy-D-xylulose 5-phosphate reductoisomerase; P	91.93
PRK12814	652	putative NADPH-dependent glutamate synthase small	91.91
PRK05557	248	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	91.91
PLN02662	322	cinnamyl-alcohol dehydrogenase family protein	91.9
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	91.88
PRK09134	258	short chain dehydrogenase; Provisional	91.87
PLN02427	386	UDP-apiose/xylose synthase	91.87
PRK09135	249	pteridine reductase; Provisional	91.87
PRK08955	334	glyceraldehyde-3-phosphate dehydrogenase; Validate	91.85
TIGR02622	349	CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Member	91.83
PRK08300	302	acetaldehyde dehydrogenase; Validated	91.82
PRK14982	340	acyl-ACP reductase; Provisional	91.81
PLN02366	308	spermidine synthase	91.8
PRK12744	257	short chain dehydrogenase; Provisional	91.79
PRK13656	398	trans-2-enoyl-CoA reductase; Provisional	91.78
KOG1252	362	consensus Cystathionine beta-synthase and related	91.76
COG0144	355	Sun tRNA and rRNA cytosine-C5-methylases [Translat	91.73
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	91.72
PRK06141	314	ornithine cyclodeaminase; Validated	91.71

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=100.00  E-value=8.4e-55  Score=407.26  Aligned_cols=302  Identities=32%  Similarity=0.477  Sum_probs=263.6

Q ss_pred             CcceeEEEEcccCCcceEEEeccccCCCCCCCeEEEEEeEEecChHhHHhhcCCCCCCCCCCCCcCCCceeEEEEEeCCC
Q 016265           81 PSEMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQ  160 (392)
Q Consensus        81 p~~mka~v~~~~~~~~~l~~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~~~p~v~G~e~~G~V~~vG~~  160 (392)
                      +.+|||+++.+++++  ++++ +++.|+|+++||+|+|.|||+|++|+|.++|.++.  ..+|.++|||.+|+|+++|++
T Consensus         1 ~~~mkA~~~~~~~~p--l~i~-e~~~p~p~~~eVlI~v~~~GVChsDlH~~~G~~~~--~~~P~ipGHEivG~V~~vG~~   75 (339)
T COG1064           1 MMTMKAAVLKKFGQP--LEIE-EVPVPEPGPGEVLIKVEACGVCHTDLHVAKGDWPV--PKLPLIPGHEIVGTVVEVGEG   75 (339)
T ss_pred             CcceEEEEEccCCCC--ceEE-eccCCCCCCCeEEEEEEEEeecchhhhhhcCCCCC--CCCCccCCcceEEEEEEecCC
Confidence            357999999999987  7778 89999999999999999999999999999999965  349999999999999999999


Q ss_pred             CCCCCCCCEEEe-cccc------------------cccCCCCCCCcceeEEEecCCceeeCCCCCCHHhHhccchhHHHH
Q 016265          161 VKEFKEGDEVYG-DINE------------------KALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETA  221 (392)
Q Consensus       161 v~~~~vGdrV~~-~~~~------------------~~~~~~~~~G~~a~~~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta  221 (392)
                      |++|++||||.. +...                  ....+...+|+|+||+++++.+++++|+++++++||.+.|++.|+
T Consensus        76 V~~~k~GDrVgV~~~~~~Cg~C~~C~~G~E~~C~~~~~~gy~~~GGyaeyv~v~~~~~~~iP~~~d~~~aApllCaGiT~  155 (339)
T COG1064          76 VTGLKVGDRVGVGWLVISCGECEYCRSGNENLCPNQKITGYTTDGGYAEYVVVPARYVVKIPEGLDLAEAAPLLCAGITT  155 (339)
T ss_pred             CccCCCCCEEEecCccCCCCCCccccCcccccCCCccccceeecCcceeEEEEchHHeEECCCCCChhhhhhhhcCeeeE
Confidence            999999999965 2110                  112445578999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCCcc-ccCCCCccEE
Q 016265          222 YEGLERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNF-EDLPEKFDVV  300 (392)
Q Consensus       222 ~~al~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~-~~~~~~~D~v  300 (392)
                      |++|++.+++||++|+|+| .|++|++++|+||++ |++|++++++++|+++++++|+|++++..+++. +...+.+|++
T Consensus       156 y~alk~~~~~pG~~V~I~G-~GGlGh~avQ~Aka~-ga~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~i  233 (339)
T COG1064         156 YRALKKANVKPGKWVAVVG-AGGLGHMAVQYAKAM-GAEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAI  233 (339)
T ss_pred             eeehhhcCCCCCCEEEEEC-CcHHHHHHHHHHHHc-CCeEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEE
Confidence            9999999999999999998 889999999999995 999999999999999999999999999765443 3344459999


Q ss_pred             EecCc--cHHHHHHhcccCCeEEEEcCCC-CC-Cce------------EEEEeecHHHHHHHHHHHHCCCcccccCCCcc
Q 016265          301 YDAIG--QCDRAVKAIKEGGTVVALTGAV-TP-PGF------------RFVVTSNGEVLKKLNPYLESGKVKPIIDPKGP  364 (392)
Q Consensus       301 id~~G--~~~~~~~~l~~~G~iv~~g~~~-~~-~~~------------~~~~~~~~~~~~~~~~~l~~g~l~~~~~~t~~  364 (392)
                      ||+++  .++.++++|+++|+++.+|... .+ ..+            .-++.....++++++++..+|++++.+.  +.
T Consensus       234 i~tv~~~~~~~~l~~l~~~G~~v~vG~~~~~~~~~~~~~~li~~~~~i~GS~~g~~~d~~e~l~f~~~g~Ikp~i~--e~  311 (339)
T COG1064         234 IDTVGPATLEPSLKALRRGGTLVLVGLPGGGPIPLLPAFLLILKEISIVGSLVGTRADLEEALDFAAEGKIKPEIL--ET  311 (339)
T ss_pred             EECCChhhHHHHHHHHhcCCEEEEECCCCCcccCCCCHHHhhhcCeEEEEEecCCHHHHHHHHHHHHhCCceeeEE--ee
Confidence            99998  4689999999999999999873 22 111            1123345788999999999999999853  58


Q ss_pred             cchhhHHHHHHHHHhCCCCeeEEEEeC
Q 016265          365 FPFSQVVEAFSYIETNKATGKVVIHPI  391 (392)
Q Consensus       365 ~~l~~~~~A~~~l~~~~~~gKvvl~~~  391 (392)
                      ++++|+++||+.|++++..|+.||.+.
T Consensus       312 ~~l~~in~A~~~m~~g~v~gR~Vi~~~  338 (339)
T COG1064         312 IPLDEINEAYERMEKGKVRGRAVIDMS  338 (339)
T ss_pred             ECHHHHHHHHHHHHcCCeeeEEEecCC
Confidence            999999999999999999999999864

>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]

Probab=100.00  E-value=6.4e-49  Score=375.35  Aligned_cols=296  Identities=41%  Similarity=0.628  Sum_probs=253.8

Q ss_pred             eeEEEEcccCCcceEEEeccccCCCCCCCeEEEEEeEEecChHhHHhhcCCCCCCCCCCCCcCCCceeEEEEEeCCCCCC
Q 016265           84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKE  163 (392)
Q Consensus        84 mka~v~~~~~~~~~l~~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~~~p~v~G~e~~G~V~~vG~~v~~  163 (392)
                      ||++++.+.+.++.++++ |++.|.|++|||||||.++|||+.|...++|..+ ...++|+++|.|++|+|+++|++|++
T Consensus         1 mka~~~~~~g~~~~l~~~-e~~~P~p~~geVlVrV~a~gvN~~D~~~r~G~~~-~~~~~P~i~G~d~aG~V~avG~~V~~   78 (326)
T COG0604           1 MKAVVVEEFGGPEVLKVV-EVPEPEPGPGEVLVRVKAAGVNPIDVLVRQGLAP-PVRPLPFIPGSEAAGVVVAVGSGVTG   78 (326)
T ss_pred             CeEEEEeccCCCceeEEE-ecCCCCCCCCeEEEEEEEeecChHHHHhccCCCC-CCCCCCCcccceeEEEEEEeCCCCCC
Confidence            799999999988779999 9999999999999999999999999999999722 33568999999999999999999999


Q ss_pred             CCCCCEEEecccccccCCCCCCCcceeEEEecCCceeeCCCCCCHHhHhccchhHHHHHHHHH-hcCCCCCCeEEEEcCC
Q 016265          164 FKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLE-RTGFSAGKSILVLNGS  242 (392)
Q Consensus       164 ~~vGdrV~~~~~~~~~~~~~~~G~~a~~~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~al~-~~~~~~g~~VlI~Ga~  242 (392)
                      |++||||+.... .   +  .+|+|+||+.++++.++++|+++++++||+++++++|||++|. ..++++|++|||+||+
T Consensus        79 ~~~GdrV~~~~~-~---~--~~G~~AEy~~v~a~~~~~~P~~ls~~eAAal~~~~~TA~~~l~~~~~l~~g~~VLV~gaa  152 (326)
T COG0604          79 FKVGDRVAALGG-V---G--RDGGYAEYVVVPADWLVPLPDGLSFEEAAALPLAGLTAWLALFDRAGLKPGETVLVHGAA  152 (326)
T ss_pred             cCCCCEEEEccC-C---C--CCCcceeEEEecHHHceeCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEecCC
Confidence            999999999741 0   0  3699999999999999999999999999999999999999996 4889999999999999


Q ss_pred             CcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCCccccC------CCCccEEEecCc--cHHHHHHhc
Q 016265          243 GGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFEDL------PEKFDVVYDAIG--QCDRAVKAI  314 (392)
Q Consensus       243 G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~~~------~~~~D~vid~~G--~~~~~~~~l  314 (392)
                      |++|++++|+||++ |+.+++++.++++.++++++|+|++++|.++++.+.      ++++|+|||++|  .+..++++|
T Consensus       153 GgVG~~aiQlAk~~-G~~~v~~~~s~~k~~~~~~lGAd~vi~y~~~~~~~~v~~~t~g~gvDvv~D~vG~~~~~~~l~~l  231 (326)
T COG0604         153 GGVGSAAIQLAKAL-GATVVAVVSSSEKLELLKELGADHVINYREEDFVEQVRELTGGKGVDVVLDTVGGDTFAASLAAL  231 (326)
T ss_pred             chHHHHHHHHHHHc-CCcEEEEecCHHHHHHHHhcCCCEEEcCCcccHHHHHHHHcCCCCceEEEECCCHHHHHHHHHHh
Confidence            99999999999995 888888888888888999999999999998877553      347999999999  468899999


Q ss_pred             ccCCeEEEEcCCCC-CC-ce----------EE---EEeec-----HHHHHHHHHHHHCCCcccccCCCcccchhhHHHHH
Q 016265          315 KEGGTVVALTGAVT-PP-GF----------RF---VVTSN-----GEVLKKLNPYLESGKVKPIIDPKGPFPFSQVVEAF  374 (392)
Q Consensus       315 ~~~G~iv~~g~~~~-~~-~~----------~~---~~~~~-----~~~~~~~~~~l~~g~l~~~~~~t~~~~l~~~~~A~  374 (392)
                      +++|+++.+|.... +. .+          ..   .....     .+.++++.+++++|.+++.+.  .+|||+|..++.
T Consensus       232 ~~~G~lv~ig~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~g~l~~~i~--~~~~l~e~~~a~  309 (326)
T COG0604         232 APGGRLVSIGALSGGPPVPLNLLPLLGKRLTLRGVTLGSRDPEALAEALAELFDLLASGKLKPVID--RVYPLAEAPAAA  309 (326)
T ss_pred             ccCCEEEEEecCCCCCccccCHHHHhhccEEEEEecceecchHHHHHHHHHHHHHHHcCCCcceec--cEechhhhHHHH
Confidence            99999999987551 11 01          00   11112     567888999999999999855  789999976666


Q ss_pred             HHHHhC-CCCeeEEEEe
Q 016265          375 SYIETN-KATGKVVIHP  390 (392)
Q Consensus       375 ~~l~~~-~~~gKvvl~~  390 (392)
                      .+...+ +..||+||++
T Consensus       310 a~~~~~~~~~GKvvl~~  326 (326)
T COG0604         310 AHLLLERRTTGKVVLKV  326 (326)
T ss_pred             HHHHcccCCcceEEEeC
Confidence            655555 7889999975

>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=1.1e-48  Score=355.32  Aligned_cols=304  Identities=25%  Similarity=0.333  Sum_probs=252.1

Q ss_pred             CcceeEEEEcccCCcceEEEeccccCCCC-CCCeEEEEEeEEecChHhHHhhcCCC-CCCCCCCCCcCCCceeEEEEEeC
Q 016265           81 PSEMKAWLYGEYGGVDVLKFDEKVTVPQV-KEDQVLIKVVAAALNPVDGKRRQGKF-KATDSPLPTVPGYDVAGVVVKVG  158 (392)
Q Consensus        81 p~~mka~v~~~~~~~~~l~~~~~~~~p~~-~~~eVlV~v~~~~i~~~D~~~~~g~~-~~~~~~~p~v~G~e~~G~V~~vG  158 (392)
                      ..+|+|+++.+.++   ++++ +.|.|++ .|+||+|++.++|||++|+|.+.... .....+.|+++|||.+|+|.++|
T Consensus         2 ~~~~~A~vl~g~~d---i~i~-~~p~p~i~~p~eVlv~i~a~GICGSDvHy~~~G~ig~~v~k~PmvlGHEssGiV~evG   77 (354)
T KOG0024|consen    2 AADNLALVLRGKGD---IRIE-QRPIPTITDPDEVLVAIKAVGICGSDVHYYTHGRIGDFVVKKPMVLGHESSGIVEEVG   77 (354)
T ss_pred             CcccceeEEEccCc---eeEe-eCCCCCCCCCCEEEEEeeeEEecCccchhhccCCcCccccccccccccccccchhhhc
Confidence            35689999998888   7888 8999988 99999999999999999999986542 22334579999999999999999


Q ss_pred             CCCCCCCCCCEEEeccc------------cccc-------CCCCCCCcceeEEEecCCceeeCCCCCCHHhHhcc-chhH
Q 016265          159 TQVKEFKEGDEVYGDIN------------EKAL-------EGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGL-PLAI  218 (392)
Q Consensus       159 ~~v~~~~vGdrV~~~~~------------~~~~-------~~~~~~G~~a~~~~v~~~~~~~iP~~l~~~~aa~l-~~~~  218 (392)
                      +.|+++++||||+.-+.            .|++       .-+..+|++++|++.++++|+++||+++++++|.+ |  +
T Consensus        78 ~~Vk~LkVGDrVaiEpg~~c~~cd~CK~GrYNlCp~m~f~atpp~~G~la~y~~~~~dfc~KLPd~vs~eeGAl~eP--L  155 (354)
T KOG0024|consen   78 DEVKHLKVGDRVAIEPGLPCRDCDFCKEGRYNLCPHMVFCATPPVDGTLAEYYVHPADFCYKLPDNVSFEEGALIEP--L  155 (354)
T ss_pred             ccccccccCCeEEecCCCccccchhhhCcccccCCccccccCCCcCCceEEEEEechHheeeCCCCCchhhcccccc--h
Confidence            99999999999976432            1111       22335799999999999999999999999999977 5  4


Q ss_pred             HHHHHHHHhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCC-eEEEEeCCcccHHHHHhcCCcEEEeCCCCc-cccC---
Q 016265          219 ETAYEGLERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGA-SRVAATSSTRNLEFLKSLGADLAIDYTKDN-FEDL---  293 (392)
Q Consensus       219 ~ta~~al~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~-~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~-~~~~---  293 (392)
                      ..++||.+++++++|++|||+| +|++|+++...||.+ |+ +|++++..+.|++.++++|++.+.+..... .+++   
T Consensus       156 sV~~HAcr~~~vk~Gs~vLV~G-AGPIGl~t~l~Aka~-GA~~VVi~d~~~~Rle~Ak~~Ga~~~~~~~~~~~~~~~~~~  233 (354)
T KOG0024|consen  156 SVGVHACRRAGVKKGSKVLVLG-AGPIGLLTGLVAKAM-GASDVVITDLVANRLELAKKFGATVTDPSSHKSSPQELAEL  233 (354)
T ss_pred             hhhhhhhhhcCcccCCeEEEEC-CcHHHHHHHHHHHHc-CCCcEEEeecCHHHHHHHHHhCCeEEeeccccccHHHHHHH
Confidence            5599999999999999999998 999999999999995 77 566777899999999999999988765433 2221   


Q ss_pred             -----C-CCccEEEecCc---cHHHHHHhcccCCeEEEEcCCCCCCce------------EEEEeecHHHHHHHHHHHHC
Q 016265          294 -----P-EKFDVVYDAIG---QCDRAVKAIKEGGTVVALTGAVTPPGF------------RFVVTSNGEVLKKLNPYLES  352 (392)
Q Consensus       294 -----~-~~~D~vid~~G---~~~~~~~~l~~~G~iv~~g~~~~~~~~------------~~~~~~~~~~~~~~~~~l~~  352 (392)
                           + ..+|++|||+|   .++.++.+++.+|++++.++......|            .-.++.....+..+++++++
T Consensus       234 v~~~~g~~~~d~~~dCsG~~~~~~aai~a~r~gGt~vlvg~g~~~~~fpi~~v~~kE~~~~g~fry~~~~y~~ai~li~s  313 (354)
T KOG0024|consen  234 VEKALGKKQPDVTFDCSGAEVTIRAAIKATRSGGTVVLVGMGAEEIQFPIIDVALKEVDLRGSFRYCNGDYPTAIELVSS  313 (354)
T ss_pred             HHhhccccCCCeEEEccCchHHHHHHHHHhccCCEEEEeccCCCccccChhhhhhheeeeeeeeeeccccHHHHHHHHHc
Confidence                 1 34999999999   469999999999998888765432222            22334445689999999999


Q ss_pred             CCcccccCCCcccchhhHHHHHHHHHhCCCC-eeEEEEeCC
Q 016265          353 GKVKPIIDPKGPFPFSQVVEAFSYIETNKAT-GKVVIHPIP  392 (392)
Q Consensus       353 g~l~~~~~~t~~~~l~~~~~A~~~l~~~~~~-gKvvl~~~p  392 (392)
                      |+++...++|++|+++++.+||+.+.+++.. -|+++.+++
T Consensus       314 Gki~~k~lIT~r~~~~~~~eAf~~~~~~~~~~iKv~i~~~~  354 (354)
T KOG0024|consen  314 GKIDVKPLITHRYKFDDADEAFETLQHGEEGVIKVIITGPE  354 (354)
T ss_pred             CCcCchhheecccccchHHHHHHHHHhCcCCceEEEEeCCC
Confidence            9999999999999999999999999998853 499988764

>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=3.4e-47  Score=344.78  Aligned_cols=306  Identities=27%  Similarity=0.386  Sum_probs=253.8

Q ss_pred             CCCCCcceeEEEEcccCCcceEEEeccccCCCCCCCeEEEEEeEEecChHhHHhhcCCCCCCCCCCCCcCCCceeEEEEE
Q 016265           77 VGTVPSEMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVK  156 (392)
Q Consensus        77 ~~~~p~~mka~v~~~~~~~~~l~~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~~~p~v~G~e~~G~V~~  156 (392)
                      .+.+|.++++|.+..++.....++. +++.|+++++||+|+|+|||||++|+|.+.|.++.  ..+|.++|||.+|+|++
T Consensus         3 ~~~~p~k~~g~~~~~~~G~l~p~~~-~~~~~~~g~~dv~vkI~~cGIChsDlH~~~gdwg~--s~~PlV~GHEiaG~Vvk   79 (360)
T KOG0023|consen    3 SMSIPEKQFGWAARDPSGVLSPEVF-SFPVREPGENDVLVKIEYCGVCHSDLHAWKGDWGL--SKYPLVPGHEIAGVVVK   79 (360)
T ss_pred             cccCchhhEEEEEECCCCCCCccee-EcCCCCCCCCcEEEEEEEEeccchhHHHhhccCCc--ccCCccCCceeeEEEEE
Confidence            3467889999999988886556777 89999999999999999999999999999999965  78999999999999999


Q ss_pred             eCCCCCCCCCCCEEEec-----c--c-------------------ccccCCCCCCCcceeEEEecCCceeeCCCCCCHHh
Q 016265          157 VGTQVKEFKEGDEVYGD-----I--N-------------------EKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQ  210 (392)
Q Consensus       157 vG~~v~~~~vGdrV~~~-----~--~-------------------~~~~~~~~~~G~~a~~~~v~~~~~~~iP~~l~~~~  210 (392)
                      +|++|++|++||||-.-     +  .                   ....+|.-..|+|++|+++++.+++++|++++.+.
T Consensus        80 vGs~V~~~kiGD~vGVg~~~~sC~~CE~C~~~~E~yCpk~~~t~~g~~~DGt~~~ggf~~~~~v~~~~a~kIP~~~pl~~  159 (360)
T KOG0023|consen   80 VGSNVTGFKIGDRVGVGWLNGSCLSCEYCKSGNENYCPKMHFTYNGVYHDGTITQGGFQEYAVVDEVFAIKIPENLPLAS  159 (360)
T ss_pred             ECCCcccccccCeeeeeEEeccccCccccccCCcccCCceeEeccccccCCCCccCccceeEEEeeeeEEECCCCCChhh
Confidence            99999999999998210     0  0                   11123333456699999999999999999999999


Q ss_pred             HhccchhHHHHHHHHHhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCc-ccHHHHHhcCCcEEEeCC-CC
Q 016265          211 AAGLPLAIETAYEGLERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSST-RNLEFLKSLGADLAIDYT-KD  288 (392)
Q Consensus       211 aa~l~~~~~ta~~al~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~-~~~~~~~~~G~~~vi~~~-~~  288 (392)
                      ||.+.|+..|+|.+|...++.||++|.|.| +|++|.+++|+||++ |.+|+++++++ +|.+.++.+|||..++.. +.
T Consensus       160 aAPlLCaGITvYspLk~~g~~pG~~vgI~G-lGGLGh~aVq~AKAM-G~rV~vis~~~~kkeea~~~LGAd~fv~~~~d~  237 (360)
T KOG0023|consen  160 AAPLLCAGITVYSPLKRSGLGPGKWVGIVG-LGGLGHMAVQYAKAM-GMRVTVISTSSKKKEEAIKSLGADVFVDSTEDP  237 (360)
T ss_pred             ccchhhcceEEeehhHHcCCCCCcEEEEec-CcccchHHHHHHHHh-CcEEEEEeCCchhHHHHHHhcCcceeEEecCCH
Confidence            999999999999999999999999999999 666999999999995 99999999987 556666789999999876 44


Q ss_pred             ccc-cCCCCccEEEecCc-----cHHHHHHhcccCCeEEEEcCCCCCCceE---EEE---------eecHHHHHHHHHHH
Q 016265          289 NFE-DLPEKFDVVYDAIG-----QCDRAVKAIKEGGTVVALTGAVTPPGFR---FVV---------TSNGEVLKKLNPYL  350 (392)
Q Consensus       289 ~~~-~~~~~~D~vid~~G-----~~~~~~~~l~~~G~iv~~g~~~~~~~~~---~~~---------~~~~~~~~~~~~~l  350 (392)
                      ++. +..+-.|..+|++.     .++.++++++++|++|.+|.+..+..++   +++         -......+++++++
T Consensus       238 d~~~~~~~~~dg~~~~v~~~a~~~~~~~~~~lk~~Gt~V~vg~p~~~~~~~~~~lil~~~~I~GS~vG~~ket~E~Ldf~  317 (360)
T KOG0023|consen  238 DIMKAIMKTTDGGIDTVSNLAEHALEPLLGLLKVNGTLVLVGLPEKPLKLDTFPLILGRKSIKGSIVGSRKETQEALDFV  317 (360)
T ss_pred             HHHHHHHHhhcCcceeeeeccccchHHHHHHhhcCCEEEEEeCcCCcccccchhhhcccEEEEeeccccHHHHHHHHHHH
Confidence            443 23333455555543     5799999999999999999887433221   111         12456789999999


Q ss_pred             HCCCcccccCCCcccchhhHHHHHHHHHhCCCCeeEEEEe
Q 016265          351 ESGKVKPIIDPKGPFPFSQVVEAFSYIETNKATGKVVIHP  390 (392)
Q Consensus       351 ~~g~l~~~~~~t~~~~l~~~~~A~~~l~~~~~~gKvvl~~  390 (392)
                      ..|.++..+   +..+++++++||++|++++..++.|++.
T Consensus       318 a~~~ik~~I---E~v~~~~v~~a~erm~kgdV~yRfVvD~  354 (360)
T KOG0023|consen  318 ARGLIKSPI---ELVKLSEVNEAYERMEKGDVRYRFVVDV  354 (360)
T ss_pred             HcCCCcCce---EEEehhHHHHHHHHHHhcCeeEEEEEEc
Confidence            999998774   5789999999999999999999998875

>KOG1197 consensus Predicted quinone oxidoreductase [Energy production and conversion; General function prediction only]

Probab=100.00  E-value=8.3e-47  Score=330.85  Aligned_cols=298  Identities=34%  Similarity=0.496  Sum_probs=263.6

Q ss_pred             CCcceeEEEEcccCCcceEEEeccccCCCCCCCeEEEEEeEEecChHhHHhhcCCCCCCCCCCCCcCCCceeEEEEEeCC
Q 016265           80 VPSEMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGT  159 (392)
Q Consensus        80 ~p~~mka~v~~~~~~~~~l~~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~~~p~v~G~e~~G~V~~vG~  159 (392)
                      .|...|.+++++.|..++++++ +.|.|+|.|+|++||..|+|+|..|..+++|.+.  ..+.|.++|-|.+|+|+++|+
T Consensus         5 ~p~~~k~i~v~e~Ggydvlk~e-d~pv~~papgel~iknka~GlNfid~y~RkGlY~--~~plPytpGmEaaGvVvAvG~   81 (336)
T KOG1197|consen    5 SPPLLKCIVVTEFGGYDVLKLE-DRPVPPPAPGELTIKNKACGLNFIDLYFRKGLYD--PAPLPYTPGMEAAGVVVAVGE   81 (336)
T ss_pred             CCchheEEEEeccCCcceEEEe-eecCCCCCCCceEEeehhcCccHHHHHHhccccC--CCCCCcCCCcccceEEEEecC
Confidence            4556799999999999999999 9999999999999999999999999999999984  467899999999999999999


Q ss_pred             CCCCCCCCCEEEecccccccCCCCCCCcceeEEEecCCceeeCCCCCCHHhHhccchhHHHHHHHHH-hcCCCCCCeEEE
Q 016265          160 QVKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLE-RTGFSAGKSILV  238 (392)
Q Consensus       160 ~v~~~~vGdrV~~~~~~~~~~~~~~~G~~a~~~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~al~-~~~~~~g~~VlI  238 (392)
                      +|+++++||||+-..         ..|.|+|+..+|...+.++|+.+++++||++.+.++|||.-++ -.++++|++|||
T Consensus        82 gvtdrkvGDrVayl~---------~~g~yaee~~vP~~kv~~vpe~i~~k~aaa~llq~lTAy~ll~e~y~vkpGhtVlv  152 (336)
T KOG1197|consen   82 GVTDRKVGDRVAYLN---------PFGAYAEEVTVPSVKVFKVPEAITLKEAAALLLQGLTAYMLLFEAYNVKPGHTVLV  152 (336)
T ss_pred             CccccccccEEEEec---------cchhhheeccccceeeccCCcccCHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEE
Confidence            999999999998754         3799999999999999999999999999999999999999985 468999999999


Q ss_pred             EcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCCccccC------CCCccEEEecCc--cHHHH
Q 016265          239 LNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFEDL------PEKFDVVYDAIG--QCDRA  310 (392)
Q Consensus       239 ~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~~~------~~~~D~vid~~G--~~~~~  310 (392)
                      +.|+|++|++++|++|.. |+.+|.+.++++|++.+++.|+.|.|+++.+++.+.      ++|+|+++|.+|  .+...
T Consensus       153 haAAGGVGlll~Ql~ra~-~a~tI~~asTaeK~~~akenG~~h~I~y~~eD~v~~V~kiTngKGVd~vyDsvG~dt~~~s  231 (336)
T KOG1197|consen  153 HAAAGGVGLLLCQLLRAV-GAHTIATASTAEKHEIAKENGAEHPIDYSTEDYVDEVKKITNGKGVDAVYDSVGKDTFAKS  231 (336)
T ss_pred             EeccccHHHHHHHHHHhc-CcEEEEEeccHHHHHHHHhcCCcceeeccchhHHHHHHhccCCCCceeeeccccchhhHHH
Confidence            999999999999999995 999999999999999999999999999999887542      578999999999  57899


Q ss_pred             HHhcccCCeEEEEcCCCC-CCceEE----------E----Ee--ecH----HHHHHHHHHHHCCCcccccCCCcccchhh
Q 016265          311 VKAIKEGGTVVALTGAVT-PPGFRF----------V----VT--SNG----EVLKKLNPYLESGKVKPIIDPKGPFPFSQ  369 (392)
Q Consensus       311 ~~~l~~~G~iv~~g~~~~-~~~~~~----------~----~~--~~~----~~~~~~~~~l~~g~l~~~~~~t~~~~l~~  369 (392)
                      +.+|+++|.+|.+|.... ...+++          .    +.  ..+    ....+++.++.+|.+++.+  .|+|||++
T Consensus       232 l~~Lk~~G~mVSfG~asgl~~p~~l~~ls~k~l~lvrpsl~gYi~g~~el~~~v~rl~alvnsg~lk~~I--~~~ypls~  309 (336)
T KOG1197|consen  232 LAALKPMGKMVSFGNASGLIDPIPLNQLSPKALQLVRPSLLGYIDGEVELVSYVARLFALVNSGHLKIHI--DHVYPLSK  309 (336)
T ss_pred             HHHhccCceEEEeccccCCCCCeehhhcChhhhhhccHhhhcccCCHHHHHHHHHHHHHHhhcCccceee--eeecchHH
Confidence            999999999999987651 111111          1    00  011    1346778888999999875  48999999


Q ss_pred             HHHHHHHHHhCCCCeeEEEEeCC
Q 016265          370 VVEAFSYIETNKATGKVVIHPIP  392 (392)
Q Consensus       370 ~~~A~~~l~~~~~~gKvvl~~~p  392 (392)
                      +.+|...+++++..||+++.+.|
T Consensus       310 vadA~~diesrktvGkvlLlp~~  332 (336)
T KOG1197|consen  310 VADAHADIESRKTVGKVLLLPGP  332 (336)
T ss_pred             HHHHHHHHHhhhccceEEEeCCc
Confidence            99999999999999999999876

>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]

Probab=100.00  E-value=2.5e-46  Score=342.94  Aligned_cols=298  Identities=25%  Similarity=0.347  Sum_probs=252.3

Q ss_pred             ceeEEEEcccCCcceEEEeccccCCCCCCCeEEEEEeEEecChHhHHhhcCCCCCCCCCCCCcCCCceeEEEEEeCCCCC
Q 016265           83 EMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVK  162 (392)
Q Consensus        83 ~mka~v~~~~~~~~~l~~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~~~p~v~G~e~~G~V~~vG~~v~  162 (392)
                      ++||.+..+++++  |+++ ++.+++|++|||+||+.++|+|++|++..+|..|.   .+|.++|||++|+|++||++|+
T Consensus         2 k~~aAV~~~~~~P--l~i~-ei~l~~P~~gEVlVri~AtGVCHTD~~~~~G~~p~---~~P~vLGHEgAGiVe~VG~gVt   75 (366)
T COG1062           2 KTRAAVAREAGKP--LEIE-EVDLDPPRAGEVLVRITATGVCHTDAHTLSGDDPE---GFPAVLGHEGAGIVEAVGEGVT   75 (366)
T ss_pred             CceEeeeecCCCC--eEEE-EEecCCCCCCeEEEEEEEeeccccchhhhcCCCCC---CCceecccccccEEEEecCCcc
Confidence            4789999888888  8888 89999999999999999999999999999999763   3899999999999999999999


Q ss_pred             CCCCCCEEEecccccc--------------------------cCCC-----------CCC--CcceeEEEecCCceeeCC
Q 016265          163 EFKEGDEVYGDINEKA--------------------------LEGP-----------KQF--GSLAEYTAVEERLLAPKP  203 (392)
Q Consensus       163 ~~~vGdrV~~~~~~~~--------------------------~~~~-----------~~~--G~~a~~~~v~~~~~~~iP  203 (392)
                      ++++||+|+..+...+                          .+|.           +..  ++|+||.++++.++++++
T Consensus        76 ~vkpGDhVI~~f~p~CG~C~~C~sGk~nlC~~~~~~~~kG~m~dGttrls~~~~~~~h~lG~stFa~y~vv~~~s~vki~  155 (366)
T COG1062          76 SVKPGDHVILLFTPECGQCKFCLSGKPNLCEAIRATQGKGTMPDGTTRLSGNGVPVYHYLGCSTFAEYTVVHEISLVKID  155 (366)
T ss_pred             ccCCCCEEEEcccCCCCCCchhhCCCcccccchhhhcccccccCCceeeecCCcceeeeeccccchhheeecccceEECC
Confidence            9999999976543100                          0110           112  499999999999999999


Q ss_pred             CCCCHHhHhccchhHHHHHHHH-HhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCe-EEEEeCCcccHHHHHhcCCcE
Q 016265          204 KNLDFVQAAGLPLAIETAYEGL-ERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGAS-RVAATSSTRNLEFLKSLGADL  281 (392)
Q Consensus       204 ~~l~~~~aa~l~~~~~ta~~al-~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~-vv~~~~~~~~~~~~~~~G~~~  281 (392)
                      ++.+++.++.+.|+..|++-+. +.+++++|++|.|+| .|++|++++|-|+.. |+. +|+++.+++|++++++||+++
T Consensus       156 ~~~p~~~a~llGCgV~TG~Gav~nta~v~~G~tvaV~G-lGgVGlaaI~gA~~a-gA~~IiAvD~~~~Kl~~A~~fGAT~  233 (366)
T COG1062         156 PDAPLEKACLLGCGVTTGIGAVVNTAKVEPGDTVAVFG-LGGVGLAAIQGAKAA-GAGRIIAVDINPEKLELAKKFGATH  233 (366)
T ss_pred             CCCCccceEEEeeeeccChHHhhhcccCCCCCeEEEEe-ccHhHHHHHHHHHHc-CCceEEEEeCCHHHHHHHHhcCCce
Confidence            9999999999999999999976 678999999999998 999999999999995 875 556678999999999999999


Q ss_pred             EEeCCCCc-ccc----C-CCCccEEEecCcc---HHHHHHhcccCCeEEEEcCCCCCC-----ceEEEEe----------
Q 016265          282 AIDYTKDN-FED----L-PEKFDVVYDAIGQ---CDRAVKAIKEGGTVVALTGAVTPP-----GFRFVVT----------  337 (392)
Q Consensus       282 vi~~~~~~-~~~----~-~~~~D~vid~~G~---~~~~~~~l~~~G~iv~~g~~~~~~-----~~~~~~~----------  337 (392)
                      ++|..+.. ..+    + ..|+|.+|||+|.   +++++++..++|+.+.+|......     .++++..          
T Consensus       234 ~vn~~~~~~vv~~i~~~T~gG~d~~~e~~G~~~~~~~al~~~~~~G~~v~iGv~~~~~~i~~~~~~lv~gr~~~Gs~~G~  313 (366)
T COG1062         234 FVNPKEVDDVVEAIVELTDGGADYAFECVGNVEVMRQALEATHRGGTSVIIGVAGAGQEISTRPFQLVTGRVWKGSAFGG  313 (366)
T ss_pred             eecchhhhhHHHHHHHhcCCCCCEEEEccCCHHHHHHHHHHHhcCCeEEEEecCCCCceeecChHHeeccceEEEEeecC
Confidence            99987763 332    3 3499999999994   689999999999999998765222     2222211          


Q ss_pred             -ecHHHHHHHHHHHHCCCcccccCCCcccchhhHHHHHHHHHhCCCCeeEEEE
Q 016265          338 -SNGEVLKKLNPYLESGKVKPIIDPKGPFPFSQVVEAFSYIETNKATGKVVIH  389 (392)
Q Consensus       338 -~~~~~~~~~~~~l~~g~l~~~~~~t~~~~l~~~~~A~~~l~~~~~~gKvvl~  389 (392)
                       .-..++.+++++..+|+++...++|+.++|+|+++||+.|.+|+.. |-||+
T Consensus       314 ~~p~~diP~lv~~y~~Gkl~~d~lvt~~~~Le~INeaf~~m~~G~~I-R~Vi~  365 (366)
T COG1062         314 ARPRSDIPRLVDLYMAGKLPLDRLVTHTIPLEDINEAFDLMHEGKSI-RSVIR  365 (366)
T ss_pred             CccccchhHHHHHHHcCCCchhHHhhccccHHHHHHHHHHHhCCcee-eEEec
Confidence             1145789999999999999999999999999999999999999986 66654

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=100.00  E-value=3.7e-44  Score=347.10  Aligned_cols=300  Identities=21%  Similarity=0.341  Sum_probs=241.4

Q ss_pred             CcceeEEEEcccCCcceEEEeccccCCCCCCCeEEEEEeEEecChHhHHhhc-CCCCCCCCCCCCcCCCceeEEEEEeCC
Q 016265           81 PSEMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQ-GKFKATDSPLPTVPGYDVAGVVVKVGT  159 (392)
Q Consensus        81 p~~mka~v~~~~~~~~~l~~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~-g~~~~~~~~~p~v~G~e~~G~V~~vG~  159 (392)
                      ...||+.++..++.   ++++ +.+.| ++++||||||.++|||++|++.+. |.++.....+|.++|||++|+|+++  
T Consensus         2 ~~~~~~~~~~~~~~---~~~~-~~~~p-~~~~evlVkv~a~gic~sD~~~~~~g~~~~~~~~~p~v~GhE~~G~V~~v--   74 (343)
T PRK09880          2 QVKTQSCVVAGKKD---VAVT-EQEIE-WNNNGTLVQITRGGICGSDLHYYQEGKVGNFVIKAPMVLGHEVIGKIVHS--   74 (343)
T ss_pred             cccceEEEEecCCc---eEEE-ecCCC-CCCCeEEEEEEEEEECccccHhhccCCcccccccCCcccCcccEEEEEEe--
Confidence            34579999987776   7777 78887 689999999999999999999875 4432222457899999999999999  


Q ss_pred             CCCCCCCCCEEEecccccc------------------cCC-----CCCCCcceeEEEecCCceeeCCCCCCHHhHhccch
Q 016265          160 QVKEFKEGDEVYGDINEKA------------------LEG-----PKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPL  216 (392)
Q Consensus       160 ~v~~~~vGdrV~~~~~~~~------------------~~~-----~~~~G~~a~~~~v~~~~~~~iP~~l~~~~aa~l~~  216 (392)
                      +|++|++||||+......+                  ..|     ...+|+|+||++++++.++++|+++++++++ +..
T Consensus        75 ~v~~~~vGdrV~~~~~~~cg~c~~c~~g~~~~c~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~~~P~~l~~~~aa-~~~  153 (343)
T PRK09880         75 DSSGLKEGQTVAINPSKPCGHCKYCLSHNENQCTTMRFFGSAMYFPHVDGGFTRYKVVDTAQCIPYPEKADEKVMA-FAE  153 (343)
T ss_pred             cCccCCCCCEEEECCCCCCcCChhhcCCChhhCCCcceeecccccCCCCCceeeeEEechHHeEECCCCCCHHHHH-hhc
Confidence            7889999999986421100                  001     1246999999999999999999999998665 445


Q ss_pred             hHHHHHHHHHhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCC-eEEEEeCCcccHHHHHhcCCcEEEeCCCCccccC--
Q 016265          217 AIETAYEGLERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGA-SRVAATSSTRNLEFLKSLGADLAIDYTKDNFEDL--  293 (392)
Q Consensus       217 ~~~ta~~al~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~-~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~~~--  293 (392)
                      ++.+||+++++....+|++|+|+| +|++|++++|+||.+ |+ ++++++++++|+++++++|+++++|++++++.+.  
T Consensus       154 ~~~~a~~al~~~~~~~g~~VlV~G-~G~vG~~aiqlak~~-G~~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~  231 (343)
T PRK09880        154 PLAVAIHAAHQAGDLQGKRVFVSG-VGPIGCLIVAAVKTL-GAAEIVCADVSPRSLSLAREMGADKLVNPQNDDLDHYKA  231 (343)
T ss_pred             HHHHHHHHHHhcCCCCCCEEEEEC-CCHHHHHHHHHHHHc-CCcEEEEEeCCHHHHHHHHHcCCcEEecCCcccHHHHhc
Confidence            667899999888878999999998 699999999999995 98 5777888999999999999999999877655432  


Q ss_pred             -CCCccEEEecCcc---HHHHHHhcccCCeEEEEcCCCCCCce----------EEEE-eecHHHHHHHHHHHHCCCcccc
Q 016265          294 -PEKFDVVYDAIGQ---CDRAVKAIKEGGTVVALTGAVTPPGF----------RFVV-TSNGEVLKKLNPYLESGKVKPI  358 (392)
Q Consensus       294 -~~~~D~vid~~G~---~~~~~~~l~~~G~iv~~g~~~~~~~~----------~~~~-~~~~~~~~~~~~~l~~g~l~~~  358 (392)
                       .+++|++|||+|.   ++.++++++++|+++.+|.......+          .... ....+.++++++++++|++++.
T Consensus       232 ~~g~~D~vid~~G~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~k~~~i~g~~~~~~~~~~~~~l~~~g~i~~~  311 (343)
T PRK09880        232 EKGYFDVSFEVSGHPSSINTCLEVTRAKGVMVQVGMGGAPPEFPMMTLIVKEISLKGSFRFTEEFNTAVSWLANGVINPL  311 (343)
T ss_pred             cCCCCCEEEECCCCHHHHHHHHHHhhcCCEEEEEccCCCCCccCHHHHHhCCcEEEEEeeccccHHHHHHHHHcCCCCch
Confidence             2359999999994   57899999999999999864422111          1110 1124578999999999999886


Q ss_pred             cCCCcccchhhHHHHHHHHHhCCCCeeEEEEe
Q 016265          359 IDPKGPFPFSQVVEAFSYIETNKATGKVVIHP  390 (392)
Q Consensus       359 ~~~t~~~~l~~~~~A~~~l~~~~~~gKvvl~~  390 (392)
                      ..++++|+|+|+++||+.+.+++..||+++.+
T Consensus       312 ~~i~~~~~l~~~~~A~~~~~~~~~~gKvvl~~  343 (343)
T PRK09880        312 PLLSAEYPFTDLEEALIFAGDKTQAAKVQLVF  343 (343)
T ss_pred             hheEEEEEHHHHHHHHHHHhcCCCceEEEEeC
Confidence            66789999999999999999988789999875

>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like

Probab=100.00  E-value=8.2e-44  Score=344.02  Aligned_cols=299  Identities=28%  Similarity=0.360  Sum_probs=247.7

Q ss_pred             eeEEEEcccCCcceEEEeccccCCCCCCCeEEEEEeEEecChHhHHhhcCCCCCCCCCCCCcCCCceeEEEEEeCCCCCC
Q 016265           84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKE  163 (392)
Q Consensus        84 mka~v~~~~~~~~~l~~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~~~p~v~G~e~~G~V~~vG~~v~~  163 (392)
                      |||+++.+++.   ++++ +++.|.|+++||+||+.++|||++|++.+.|.+.. ...+|.++|||++|+|+++|++|++
T Consensus         1 mka~~~~~~~~---l~~~-~~~~p~~~~~evlV~v~~~gi~~~D~~~~~~~~~~-~~~~p~i~G~e~~G~V~~vG~~v~~   75 (339)
T cd08239           1 MRGAVFPGDRT---VELR-EFPVPVPGPGEVLLRVKASGLCGSDLHYYYHGHRA-PAYQGVIPGHEPAGVVVAVGPGVTH   75 (339)
T ss_pred             CeEEEEecCCc---eEEE-ecCCCCCCCCeEEEEEEEEEeccccHHHHcCCCCc-cCCCCceeccCceEEEEEECCCCcc
Confidence            79999986554   7888 89999999999999999999999999988776432 2235789999999999999999999


Q ss_pred             CCCCCEEEecccccc-------------------cCCCCCCCcceeEEEecCCceeeCCCCCCHHhHhccchhHHHHHHH
Q 016265          164 FKEGDEVYGDINEKA-------------------LEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEG  224 (392)
Q Consensus       164 ~~vGdrV~~~~~~~~-------------------~~~~~~~G~~a~~~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~a  224 (392)
                      +++||+|+......+                   ..|...+|+|+||+.++...++++|+++++++++.+++++.|||++
T Consensus        76 ~~~Gd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~g~~~~G~~ae~~~v~~~~~~~~P~~~~~~~aa~l~~~~~ta~~~  155 (339)
T cd08239          76 FRVGDRVMVYHYVGCGACRNCRRGWMQLCTSKRAAYGWNRDGGHAEYMLVPEKTLIPLPDDLSFADGALLLCGIGTAYHA  155 (339)
T ss_pred             CCCCCEEEECCCCCCCCChhhhCcCcccCcCcccccccCCCCcceeEEEechHHeEECCCCCCHHHhhhhcchHHHHHHH
Confidence            999999987542110                   0122346999999999999999999999999999999999999999


Q ss_pred             HHhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCe-EEEEeCCcccHHHHHhcCCcEEEeCCCCcccc---C--CCCcc
Q 016265          225 LERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGAS-RVAATSSTRNLEFLKSLGADLAIDYTKDNFED---L--PEKFD  298 (392)
Q Consensus       225 l~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~-vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~~---~--~~~~D  298 (392)
                      ++++.+++|++|+|+| +|++|++++|+||. .|++ +++++++++|+++++++|+++++++++++...   .  .+++|
T Consensus       156 l~~~~~~~g~~vlV~G-~G~vG~~~~~~ak~-~G~~~vi~~~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~~d  233 (339)
T cd08239         156 LRRVGVSGRDTVLVVG-AGPVGLGALMLARA-LGAEDVIGVDPSPERLELAKALGADFVINSGQDDVQEIRELTSGAGAD  233 (339)
T ss_pred             HHhcCCCCCCEEEEEC-CCHHHHHHHHHHHH-cCCCEEEEECCCHHHHHHHHHhCCCEEEcCCcchHHHHHHHhCCCCCC
Confidence            9888899999999997 69999999999999 5998 88888899999999999999999987644211   1  24799


Q ss_pred             EEEecCcc---HHHHHHhcccCCeEEEEcCCCCCC-c---------eEEE--EeecHHHHHHHHHHHHCCCcccccCCCc
Q 016265          299 VVYDAIGQ---CDRAVKAIKEGGTVVALTGAVTPP-G---------FRFV--VTSNGEVLKKLNPYLESGKVKPIIDPKG  363 (392)
Q Consensus       299 ~vid~~G~---~~~~~~~l~~~G~iv~~g~~~~~~-~---------~~~~--~~~~~~~~~~~~~~l~~g~l~~~~~~t~  363 (392)
                      ++|||+|.   ++.++++++++|+++.+|...... .         +.+.  .....+.++++++++.+|++++...+++
T Consensus       234 ~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~g~i~~~~~i~~  313 (339)
T cd08239         234 VAIECSGNTAARRLALEAVRPWGRLVLVGEGGELTIEVSNDLIRKQRTLIGSWYFSVPDMEECAEFLARHKLEVDRLVTH  313 (339)
T ss_pred             EEEECCCCHHHHHHHHHHhhcCCEEEEEcCCCCcccCcHHHHHhCCCEEEEEecCCHHHHHHHHHHHHcCCCChhHeEEE
Confidence            99999984   367899999999999998643210 0         1111  1123467899999999999987666789


Q ss_pred             ccchhhHHHHHHHHHhCCCCeeEEEEe
Q 016265          364 PFPFSQVVEAFSYIETNKATGKVVIHP  390 (392)
Q Consensus       364 ~~~l~~~~~A~~~l~~~~~~gKvvl~~  390 (392)
                      +|+++|+++||+.++++. .||+|+++
T Consensus       314 ~~~l~~~~~a~~~~~~~~-~gKvvi~~  339 (339)
T cd08239         314 RFGLDQAPEAYALFAQGE-SGKVVFVF  339 (339)
T ss_pred             EecHHHHHHHHHHHHcCC-ceEEEEeC
Confidence            999999999999998875 69999875

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at

>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

Probab=100.00  E-value=7.9e-44  Score=348.42  Aligned_cols=299  Identities=25%  Similarity=0.324  Sum_probs=247.3

Q ss_pred             eeEEEEcccCC------cceEEEeccccCCCCCCCeEEEEEeEEecChHhHHhhcCCCCCCCCCCCCcCCCceeEEEEEe
Q 016265           84 MKAWLYGEYGG------VDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKV  157 (392)
Q Consensus        84 mka~v~~~~~~------~~~l~~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~~~p~v~G~e~~G~V~~v  157 (392)
                      |||+++.++|.      ++.++++ +++.|+|+++||+|||.++|||++|++.+.|.++   ..+|.++|||++|+|+++
T Consensus         1 mka~~~~~~g~~~~~~~~~~l~~~-~~~~P~~~~~evlV~v~~~gi~~~D~~~~~g~~~---~~~p~i~GhE~~G~V~~v   76 (371)
T cd08281           1 MRAAVLRETGAPTPYADSRPLVIE-EVELDPPGPGEVLVKIAAAGLCHSDLSVINGDRP---RPLPMALGHEAAGVVVEV   76 (371)
T ss_pred             CcceEEEecccccccccCCCceEE-EeecCCCCCCeEEEEEEEEeeCccchHhhcCCCC---CCCCccCCccceeEEEEe
Confidence            79999998875      3668888 8999999999999999999999999999988753   346899999999999999


Q ss_pred             CCCCCCCCCCCEEEeccccc------ccC---------------CC------------------CCCCcceeEEEecCCc
Q 016265          158 GTQVKEFKEGDEVYGDINEK------ALE---------------GP------------------KQFGSLAEYTAVEERL  198 (392)
Q Consensus       158 G~~v~~~~vGdrV~~~~~~~------~~~---------------~~------------------~~~G~~a~~~~v~~~~  198 (392)
                      |++|+++++||||++.....      +..               |.                  ...|+|+||+.+++..
T Consensus        77 G~~v~~~~~GdrV~~~~~~~cg~c~~c~~g~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~g~G~~aey~~v~~~~  156 (371)
T cd08281          77 GEGVTDLEVGDHVVLVFVPSCGHCRPCAEGRPALCEPGAAANGAGTLLSGGRRLRLRGGEINHHLGVSAFAEYAVVSRRS  156 (371)
T ss_pred             CCCCCcCCCCCEEEEccCCCCCCCccccCCCcccccCccccccccccccCcccccccCcccccccCcccceeeEEecccc
Confidence            99999999999998742110      000               00                  0137999999999999


Q ss_pred             eeeCCCCCCHHhHhccchhHHHHHHHH-HhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCC-eEEEEeCCcccHHHHHh
Q 016265          199 LAPKPKNLDFVQAAGLPLAIETAYEGL-ERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGA-SRVAATSSTRNLEFLKS  276 (392)
Q Consensus       199 ~~~iP~~l~~~~aa~l~~~~~ta~~al-~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~-~vv~~~~~~~~~~~~~~  276 (392)
                      ++++|+++++++++.+++++.|||+++ +.+++++|++|+|+| +|++|++++|+||. .|+ ++++++.+++|++++++
T Consensus       157 ~~~lP~~l~~~~aa~~~~~~~ta~~~~~~~~~i~~g~~VlV~G-~G~vG~~a~~lak~-~G~~~Vi~~~~~~~r~~~a~~  234 (371)
T cd08281         157 VVKIDKDVPLEIAALFGCAVLTGVGAVVNTAGVRPGQSVAVVG-LGGVGLSALLGAVA-AGASQVVAVDLNEDKLALARE  234 (371)
T ss_pred             eEECCCCCChHHhhhhcchHHHHHHHHHhccCCCCCCEEEEEC-CCHHHHHHHHHHHH-cCCCcEEEEcCCHHHHHHHHH
Confidence            999999999999999999999999997 568899999999998 79999999999998 499 57788889999999999


Q ss_pred             cCCcEEEeCCCCcccc----C-CCCccEEEecCcc---HHHHHHhcccCCeEEEEcCCCCCC--ce----------EEE-
Q 016265          277 LGADLAIDYTKDNFED----L-PEKFDVVYDAIGQ---CDRAVKAIKEGGTVVALTGAVTPP--GF----------RFV-  335 (392)
Q Consensus       277 ~G~~~vi~~~~~~~~~----~-~~~~D~vid~~G~---~~~~~~~l~~~G~iv~~g~~~~~~--~~----------~~~-  335 (392)
                      +|+++++++.++++.+    . .+++|++|||+|.   ++.++++++++|+++.+|......  .+          .+. 
T Consensus       235 ~Ga~~~i~~~~~~~~~~i~~~~~~g~d~vid~~G~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~i~g  314 (371)
T cd08281         235 LGATATVNAGDPNAVEQVRELTGGGVDYAFEMAGSVPALETAYEITRRGGTTVTAGLPDPEARLSVPALSLVAEERTLKG  314 (371)
T ss_pred             cCCceEeCCCchhHHHHHHHHhCCCCCEEEECCCChHHHHHHHHHHhcCCEEEEEccCCCCceeeecHHHHhhcCCEEEE
Confidence            9999999987655422    1 3379999999983   588999999999999998653211  11          111 


Q ss_pred             -Eee---cHHHHHHHHHHHHCCCcccccCCCcccchhhHHHHHHHHHhCCCCeeEEE
Q 016265          336 -VTS---NGEVLKKLNPYLESGKVKPIIDPKGPFPFSQVVEAFSYIETNKATGKVVI  388 (392)
Q Consensus       336 -~~~---~~~~~~~~~~~l~~g~l~~~~~~t~~~~l~~~~~A~~~l~~~~~~gKvvl  388 (392)
                       ...   ..+.+.++++++++|++++...+++.|+|+|+++||+.+++++..+|+|+
T Consensus       315 ~~~~~~~~~~~~~~~~~l~~~g~i~~~~~i~~~~~l~~~~~A~~~~~~~~~~~~vi~  371 (371)
T cd08281         315 SYMGSCVPRRDIPRYLALYLSGRLPVDKLLTHRLPLDEINEGFDRLAAGEAVRQVIL  371 (371)
T ss_pred             EecCCCChHHHHHHHHHHHHcCCCCchhheeeeecHHHHHHHHHHHhCCCceeeeeC
Confidence             111   24678899999999999877677899999999999999999988877664

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd

>PLN02740 Alcohol dehydrogenase-like

Probab=100.00  E-value=8.7e-43  Score=342.15  Aligned_cols=307  Identities=22%  Similarity=0.269  Sum_probs=249.1

Q ss_pred             CCCCCcceeEEEEcccCCcceEEEeccccCCCCCCCeEEEEEeEEecChHhHHhhcCCCCCCCCCCCCcCCCceeEEEEE
Q 016265           77 VGTVPSEMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVK  156 (392)
Q Consensus        77 ~~~~p~~mka~v~~~~~~~~~l~~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~~~p~v~G~e~~G~V~~  156 (392)
                      +++.|.+|||+++.++++.  +.++ +++.|.|+++||+|||.++|||++|++.+.|.++. ...+|.++|||++|+|++
T Consensus         4 ~~~~~~~mka~~~~~~~~~--~~~~-e~~~P~~~~~eVlV~v~~~gic~sD~~~~~g~~~~-~~~~p~i~GhE~~G~V~~   79 (381)
T PLN02740          4 TQGKVITCKAAVAWGPGEP--LVME-EIRVDPPQKMEVRIKILYTSICHTDLSAWKGENEA-QRAYPRILGHEAAGIVES   79 (381)
T ss_pred             ccccceeeEEEEEecCCCC--cEEE-EeeCCCCCCCeEEEEEEEEecChhhHHHhCCCCcc-cCCCCccccccceEEEEE
Confidence            3445667999999887754  6677 89999999999999999999999999999987532 235789999999999999


Q ss_pred             eCCCCCCCCCCCEEEecccccc------cC---------------------C---------------CCCCCcceeEEEe
Q 016265          157 VGTQVKEFKEGDEVYGDINEKA------LE---------------------G---------------PKQFGSLAEYTAV  194 (392)
Q Consensus       157 vG~~v~~~~vGdrV~~~~~~~~------~~---------------------~---------------~~~~G~~a~~~~v  194 (392)
                      +|+++++|++||||++.....+      ..                     +               ....|+|+||+++
T Consensus        80 vG~~v~~~~vGdrV~~~~~~~cg~C~~c~~g~~~~C~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~G~~aey~~v  159 (381)
T PLN02740         80 VGEGVEDLKAGDHVIPIFNGECGDCRYCKRDKTNLCETYRVDPFKSVMVNDGKTRFSTKGDGQPIYHFLNTSTFTEYTVL  159 (381)
T ss_pred             eCCCCCcCCCCCEEEecCCCCCCCChhhcCCCcccccCccccccccccccCCCcccccccCCCcccccccCccceeEEEE
Confidence            9999999999999987532100      00                     0               0025899999999


Q ss_pred             cCCceeeCCCCCCHHhHhccchhHHHHHHHH-HhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCC-eEEEEeCCcccHH
Q 016265          195 EERLLAPKPKNLDFVQAAGLPLAIETAYEGL-ERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGA-SRVAATSSTRNLE  272 (392)
Q Consensus       195 ~~~~~~~iP~~l~~~~aa~l~~~~~ta~~al-~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~-~vv~~~~~~~~~~  272 (392)
                      +.+.++++|+++++++++.+++++.|||+++ +.+++++|++|||+| +|++|++++|+||. .|+ +|++++++++|++
T Consensus       160 ~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~VlV~G-~G~vG~~a~q~ak~-~G~~~Vi~~~~~~~r~~  237 (381)
T PLN02740        160 DSACVVKIDPNAPLKKMSLLSCGVSTGVGAAWNTANVQAGSSVAIFG-LGAVGLAVAEGARA-RGASKIIGVDINPEKFE  237 (381)
T ss_pred             ehHHeEECCCCCCHHHhhhhcccchhhHHHHHhccCCCCCCEEEEEC-CCHHHHHHHHHHHH-CCCCcEEEEcCChHHHH
Confidence            9999999999999999999999999999987 568899999999998 79999999999999 598 5888889999999


Q ss_pred             HHHhcCCcEEEeCCCCc--ccc----C-CCCccEEEecCcc---HHHHHHhcccC-CeEEEEcCCCCCCc----------
Q 016265          273 FLKSLGADLAIDYTKDN--FED----L-PEKFDVVYDAIGQ---CDRAVKAIKEG-GTVVALTGAVTPPG----------  331 (392)
Q Consensus       273 ~~~~~G~~~vi~~~~~~--~~~----~-~~~~D~vid~~G~---~~~~~~~l~~~-G~iv~~g~~~~~~~----------  331 (392)
                      .++++|+++++|+.+.+  +.+    . .+++|++||++|.   +..++++++++ |+++.+|....+..          
T Consensus       238 ~a~~~Ga~~~i~~~~~~~~~~~~v~~~~~~g~dvvid~~G~~~~~~~a~~~~~~g~G~~v~~G~~~~~~~~~~~~~~~~~  317 (381)
T PLN02740        238 KGKEMGITDFINPKDSDKPVHERIREMTGGGVDYSFECAGNVEVLREAFLSTHDGWGLTVLLGIHPTPKMLPLHPMELFD  317 (381)
T ss_pred             HHHHcCCcEEEecccccchHHHHHHHHhCCCCCEEEECCCChHHHHHHHHhhhcCCCEEEEEccCCCCceecccHHHHhc
Confidence            99999999999876532  322    2 2379999999994   58899999997 99999986542211          


Q ss_pred             -eEEE--Ee-e--cHHHHHHHHHHHHCCCcccccCCCcccchhhHHHHHHHHHhCCCCeeEEEEe
Q 016265          332 -FRFV--VT-S--NGEVLKKLNPYLESGKVKPIIDPKGPFPFSQVVEAFSYIETNKATGKVVIHP  390 (392)
Q Consensus       332 -~~~~--~~-~--~~~~~~~~~~~l~~g~l~~~~~~t~~~~l~~~~~A~~~l~~~~~~gKvvl~~  390 (392)
                       ..+.  .. .  ....+.++++++.+|++++...++++|+|+|+++||+.+++++. .|++|+.
T Consensus       318 ~~~i~g~~~~~~~~~~~~~~~~~~~~~g~i~~~~~it~~~~l~e~~~A~~~~~~~~~-~k~~~~~  381 (381)
T PLN02740        318 GRSITGSVFGDFKGKSQLPNLAKQCMQGVVNLDGFITHELPFEKINEAFQLLEDGKA-LRCLLHL  381 (381)
T ss_pred             CCeEEEEecCCCCcHHHHHHHHHHHHcCCCChHHheeEEecHHHHHHHHHHHHCCCc-eeEEEeC
Confidence             1111  10 1  13568899999999999876667899999999999999998876 5998863

>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein

Probab=100.00  E-value=1.1e-42  Score=334.67  Aligned_cols=291  Identities=23%  Similarity=0.279  Sum_probs=240.4

Q ss_pred             EEEEcccCCc--ceEEEeccccCCCCCCCeEEEEEeEEecChHhHHhhcCCCCCCCCCCCCcCCCceeEEEEEeCCCCCC
Q 016265           86 AWLYGEYGGV--DVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKE  163 (392)
Q Consensus        86 a~v~~~~~~~--~~l~~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~~~p~v~G~e~~G~V~~vG~~v~~  163 (392)
                      |+.+.+++.+  ..++++ +.|.|.|+++||+||+.++|||++|++.+.|.++.  ..+|.++|||++|+|+++|++|++
T Consensus         1 ~~~~~~~g~~~~~~l~~~-~~p~P~~~~~evlVkv~~~gi~~~D~~~~~g~~~~--~~~p~i~G~e~~G~V~~vG~~v~~   77 (329)
T TIGR02822         1 AWEVERPGPIEDGPLRFV-ERPVPRPGPGELLVRVRACGVCRTDLHVSEGDLPV--HRPRVTPGHEVVGEVAGRGADAGG   77 (329)
T ss_pred             CeeeecCCcCCCCCceEE-eCCCCCCCCCeEEEEEEEEeecchhHHHHcCCCCC--CCCCccCCcceEEEEEEECCCCcc
Confidence            3566666654  458888 89999999999999999999999999999987642  234789999999999999999999


Q ss_pred             CCCCCEEEeccc-----c--------------cccCCCCCCCcceeEEEecCCceeeCCCCCCHHhHhccchhHHHHHHH
Q 016265          164 FKEGDEVYGDIN-----E--------------KALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEG  224 (392)
Q Consensus       164 ~~vGdrV~~~~~-----~--------------~~~~~~~~~G~~a~~~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~a  224 (392)
                      |++||||+....     .              ....|...+|+|+||+.++...++++|+++++++++.+++++.|||++
T Consensus        78 ~~~Gd~V~~~~~~~~c~~c~~c~~g~~~~c~~~~~~g~~~~G~~aey~~v~~~~~~~lP~~~~~~~aa~l~~~~~ta~~~  157 (329)
T TIGR02822        78 FAVGDRVGIAWLRRTCGVCRYCRRGAENLCPASRYTGWDTDGGYAEYTTVPAAFAYRLPTGYDDVELAPLLCAGIIGYRA  157 (329)
T ss_pred             cCCCCEEEEcCccCcCCCChHHhCcCcccCCCcccCCcccCCcceeEEEeccccEEECCCCCCHHHhHHHhccchHHHHH
Confidence            999999974211     0              001122346999999999999999999999999999999999999999


Q ss_pred             HHhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCCccccCCCCccEEEecC
Q 016265          225 LERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFEDLPEKFDVVYDAI  304 (392)
Q Consensus       225 l~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~~~~~~~D~vid~~  304 (392)
                      +.++++++|++|||+| +|++|++++|+||. .|+++++++++++|+++++++|+++++++.+..    .+++|+++++.
T Consensus       158 ~~~~~~~~g~~VlV~G-~g~iG~~a~~~a~~-~G~~vi~~~~~~~~~~~a~~~Ga~~vi~~~~~~----~~~~d~~i~~~  231 (329)
T TIGR02822       158 LLRASLPPGGRLGLYG-FGGSAHLTAQVALA-QGATVHVMTRGAAARRLALALGAASAGGAYDTP----PEPLDAAILFA  231 (329)
T ss_pred             HHhcCCCCCCEEEEEc-CCHHHHHHHHHHHH-CCCeEEEEeCChHHHHHHHHhCCceeccccccC----cccceEEEECC
Confidence            9888999999999999 59999999999999 599988899999999999999999999864321    24689999887


Q ss_pred             c---cHHHHHHhcccCCeEEEEcCCC-CCCce----------EE--EEeecHHHHHHHHHHHHCCCcccccCCCcccchh
Q 016265          305 G---QCDRAVKAIKEGGTVVALTGAV-TPPGF----------RF--VVTSNGEVLKKLNPYLESGKVKPIIDPKGPFPFS  368 (392)
Q Consensus       305 G---~~~~~~~~l~~~G~iv~~g~~~-~~~~~----------~~--~~~~~~~~~~~~~~~l~~g~l~~~~~~t~~~~l~  368 (392)
                      +   .+..++++++++|+++.+|... ....+          .+  ........+.++++++++|++++   ++++|+|+
T Consensus       232 ~~~~~~~~~~~~l~~~G~~v~~G~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~l~~~g~i~~---i~~~~~l~  308 (329)
T TIGR02822       232 PAGGLVPPALEALDRGGVLAVAGIHLTDTPPLNYQRHLFYERQIRSVTSNTRADAREFLELAAQHGVRV---TTHTYPLS  308 (329)
T ss_pred             CcHHHHHHHHHhhCCCcEEEEEeccCccCCCCCHHHHhhCCcEEEEeecCCHHHHHHHHHHHHhCCCee---EEEEEeHH
Confidence            6   4689999999999999998642 11111          11  11123566888999999999874   36899999


Q ss_pred             hHHHHHHHHHhCCCCeeEEE
Q 016265          369 QVVEAFSYIETNKATGKVVI  388 (392)
Q Consensus       369 ~~~~A~~~l~~~~~~gKvvl  388 (392)
                      |+++||+.+++++..||+||
T Consensus       309 ~~~~A~~~~~~~~~~Gkvvl  328 (329)
T TIGR02822       309 EADRALRDLKAGRFDGAAVL  328 (329)
T ss_pred             HHHHHHHHHHcCCCceEEEe
Confidence            99999999999999999987

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.

>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase

Probab=100.00  E-value=1.3e-42  Score=338.29  Aligned_cols=298  Identities=23%  Similarity=0.280  Sum_probs=245.7

Q ss_pred             ceeEEEEcccCCcceEEEeccccCCCCCCCeEEEEEeEEecChHhHHhhcCCCCCCCCCCCCcCCCceeEEEEEeCCCCC
Q 016265           83 EMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVK  162 (392)
Q Consensus        83 ~mka~v~~~~~~~~~l~~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~~~p~v~G~e~~G~V~~vG~~v~  162 (392)
                      +|||+++++++.+  ++++ +.+.|+|+++||+|||.++|||++|++.+.|.++   ..+|.++|||++|+|+++|++|+
T Consensus         1 ~mka~~~~~~~~~--~~~~-~~~~p~~~~~evlV~v~~~gi~~~D~~~~~g~~~---~~~p~i~G~e~~G~V~~vG~~v~   74 (358)
T TIGR03451         1 TVRGVIARSKGAP--VELE-TIVVPDPGPGEVIVDIQACGVCHTDLHYREGGIN---DEFPFLLGHEAAGVVEAVGEGVT   74 (358)
T ss_pred             CcEEEEEccCCCC--CEEE-EEECCCCCCCeEEEEEEEEeecHHHHHHhcCCcc---ccCCcccccceEEEEEEeCCCCc
Confidence            5999999998875  6777 8999999999999999999999999999988753   24688999999999999999999


Q ss_pred             CCCCCCEEEeccccc------cc--------------------CCC-----CCCCcceeEEEecCCceeeCCCCCCHHhH
Q 016265          163 EFKEGDEVYGDINEK------AL--------------------EGP-----KQFGSLAEYTAVEERLLAPKPKNLDFVQA  211 (392)
Q Consensus       163 ~~~vGdrV~~~~~~~------~~--------------------~~~-----~~~G~~a~~~~v~~~~~~~iP~~l~~~~a  211 (392)
                      +|++||||++.....      +.                    .|.     ...|+|+||+.+++..++++|++++++++
T Consensus        75 ~~~~GdrV~~~~~~~cg~c~~c~~g~~~~c~~~~~~~~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~~ip~~~~~~~a  154 (358)
T TIGR03451        75 DVAPGDYVVLNWRAVCGQCRACKRGRPWYCFDTHNATQKMTLTDGTELSPALGIGAFAEKTLVHAGQCTKVDPAADPAAA  154 (358)
T ss_pred             ccCCCCEEEEccCCCCCCChHHhCcCcccCcCccccccccccccCcccccccccccccceEEEehhheEECCCCCChhHh
Confidence            999999998632110      00                    000     12589999999999999999999999999


Q ss_pred             hccchhHHHHHHHH-HhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCe-EEEEeCCcccHHHHHhcCCcEEEeCCCCc
Q 016265          212 AGLPLAIETAYEGL-ERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGAS-RVAATSSTRNLEFLKSLGADLAIDYTKDN  289 (392)
Q Consensus       212 a~l~~~~~ta~~al-~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~-vv~~~~~~~~~~~~~~~G~~~vi~~~~~~  289 (392)
                      +.+++++.|+|+++ +.+.+++|++|||+| +|++|++++|+||. .|++ +++++++++|+++++++|+++++++.+.+
T Consensus       155 a~l~~~~~ta~~~~~~~~~~~~g~~VlV~G-~g~vG~~a~~~ak~-~G~~~Vi~~~~~~~~~~~~~~~Ga~~~i~~~~~~  232 (358)
T TIGR03451       155 GLLGCGVMAGLGAAVNTGGVKRGDSVAVIG-CGGVGDAAIAGAAL-AGASKIIAVDIDDRKLEWAREFGATHTVNSSGTD  232 (358)
T ss_pred             hhhcccchhhHHHHHhccCCCCCCEEEEEC-CCHHHHHHHHHHHH-cCCCeEEEEcCCHHHHHHHHHcCCceEEcCCCcC
Confidence            99998888999887 467899999999997 79999999999998 5985 77788899999999999999999987655


Q ss_pred             ccc----C--CCCccEEEecCcc---HHHHHHhcccCCeEEEEcCCCCC--Cc----------eEEEEe-----ecHHHH
Q 016265          290 FED----L--PEKFDVVYDAIGQ---CDRAVKAIKEGGTVVALTGAVTP--PG----------FRFVVT-----SNGEVL  343 (392)
Q Consensus       290 ~~~----~--~~~~D~vid~~G~---~~~~~~~l~~~G~iv~~g~~~~~--~~----------~~~~~~-----~~~~~~  343 (392)
                      +.+    .  ..++|++|||+|.   ++.++++++++|+++.+|.....  ..          ..+...     ...+.+
T Consensus       233 ~~~~i~~~~~~~g~d~vid~~g~~~~~~~~~~~~~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  312 (358)
T TIGR03451       233 PVEAIRALTGGFGADVVIDAVGRPETYKQAFYARDLAGTVVLVGVPTPDMTLELPLLDVFGRGGALKSSWYGDCLPERDF  312 (358)
T ss_pred             HHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHHhccCCEEEEECCCCCCceeeccHHHHhhcCCEEEEeecCCCCcHHHH
Confidence            422    2  2479999999983   57899999999999999865321  11          111111     125678


Q ss_pred             HHHHHHHHCCCcccccCCCcccchhhHHHHHHHHHhCCCCeeEEEE
Q 016265          344 KKLNPYLESGKVKPIIDPKGPFPFSQVVEAFSYIETNKATGKVVIH  389 (392)
Q Consensus       344 ~~~~~~l~~g~l~~~~~~t~~~~l~~~~~A~~~l~~~~~~gKvvl~  389 (392)
                      +++++++++|++++...++++|+++|+.+||+.+++++.. |+++.
T Consensus       313 ~~~~~l~~~g~l~~~~~i~~~~~l~~~~~A~~~~~~~~~~-k~~~~  357 (358)
T TIGR03451       313 PMLVDLYLQGRLPLDAFVTERIGLDDVEEAFDKMHAGDVL-RSVVE  357 (358)
T ss_pred             HHHHHHHHcCCCCchheEEEEecHHHHHHHHHHHhCCCcc-eeEEe
Confidence            8999999999998766678999999999999999988775 77764

Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.

>PLN02586 probable cinnamyl alcohol dehydrogenase

Probab=100.00  E-value=2.4e-42  Score=336.33  Aligned_cols=300  Identities=21%  Similarity=0.319  Sum_probs=238.5

Q ss_pred             CcceeEEEEcccCCcceEEEeccccCCCCCCCeEEEEEeEEecChHhHHhhcCCCCCCCCCCCCcCCCceeEEEEEeCCC
Q 016265           81 PSEMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQ  160 (392)
Q Consensus        81 p~~mka~v~~~~~~~~~l~~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~~~p~v~G~e~~G~V~~vG~~  160 (392)
                      |.+++++...+..  +.+++. +++.|+|+++||+|||.++|||++|++.+.|.++.  ..+|.++|||++|+|+++|++
T Consensus        10 ~~~~~~~~~~~~~--~~l~~~-~~~~p~~~~~eVlV~v~~~gic~sD~~~~~g~~~~--~~~p~i~GhE~~G~V~~vG~~   84 (360)
T PLN02586         10 PQKAFGWAARDPS--GVLSPF-HFSRRENGDEDVTVKILYCGVCHSDLHTIKNEWGF--TRYPIVPGHEIVGIVTKLGKN   84 (360)
T ss_pred             hhheeEEEecCCC--CCceEE-eecCCCCCCCeEEEEEEEecCChhhHhhhcCCcCC--CCCCccCCcceeEEEEEECCC
Confidence            4445666655443  336777 78899999999999999999999999999887542  356899999999999999999


Q ss_pred             CCCCCCCCEEEecc-----ccc--cc-------------------CCCCCCCcceeEEEecCCceeeCCCCCCHHhHhcc
Q 016265          161 VKEFKEGDEVYGDI-----NEK--AL-------------------EGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGL  214 (392)
Q Consensus       161 v~~~~vGdrV~~~~-----~~~--~~-------------------~~~~~~G~~a~~~~v~~~~~~~iP~~l~~~~aa~l  214 (392)
                      |++|++||||+...     ..+  +.                   .|...+|+|+||++++++.++++|+++++++++.+
T Consensus        85 v~~~~vGdrV~~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~~~~~g~~~~G~~aey~~v~~~~~~~lP~~ls~~~aa~l  164 (360)
T PLN02586         85 VKKFKEGDRVGVGVIVGSCKSCESCDQDLENYCPKMIFTYNSIGHDGTKNYGGYSDMIVVDQHFVLRFPDNLPLDAGAPL  164 (360)
T ss_pred             CCccCCCCEEEEccccCcCCCCccccCCCcccCCCccccccccccCCCcCCCccceEEEEchHHeeeCCCCCCHHHhhhh
Confidence            99999999997421     100  00                   02223699999999999999999999999999999


Q ss_pred             chhHHHHHHHHHh-cCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCccc-HHHHHhcCCcEEEeCCCC-ccc
Q 016265          215 PLAIETAYEGLER-TGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRN-LEFLKSLGADLAIDYTKD-NFE  291 (392)
Q Consensus       215 ~~~~~ta~~al~~-~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~-~~~~~~~G~~~vi~~~~~-~~~  291 (392)
                      ++++.|+|+++.. ..+++|++|+|.| +|++|++++|+||. .|+++++++.++++ .+.++++|+++++++.+. .+.
T Consensus       165 ~~~~~ta~~al~~~~~~~~g~~VlV~G-~G~vG~~avq~Ak~-~Ga~vi~~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~  242 (360)
T PLN02586        165 LCAGITVYSPMKYYGMTEPGKHLGVAG-LGGLGHVAVKIGKA-FGLKVTVISSSSNKEDEAINRLGADSFLVSTDPEKMK  242 (360)
T ss_pred             hcchHHHHHHHHHhcccCCCCEEEEEC-CCHHHHHHHHHHHH-CCCEEEEEeCCcchhhhHHHhCCCcEEEcCCCHHHHH
Confidence            9999999999865 4568999999987 79999999999999 59998888776665 456689999999987543 233


Q ss_pred             cCCCCccEEEecCcc---HHHHHHhcccCCeEEEEcCCCCCCceE---------EEE---eecHHHHHHHHHHHHCCCcc
Q 016265          292 DLPEKFDVVYDAIGQ---CDRAVKAIKEGGTVVALTGAVTPPGFR---------FVV---TSNGEVLKKLNPYLESGKVK  356 (392)
Q Consensus       292 ~~~~~~D~vid~~G~---~~~~~~~l~~~G~iv~~g~~~~~~~~~---------~~~---~~~~~~~~~~~~~l~~g~l~  356 (392)
                      +...++|++||++|.   ++.++++++++|+++.+|....+..++         .+.   ......++++++++++|+++
T Consensus       243 ~~~~~~D~vid~~g~~~~~~~~~~~l~~~G~iv~vG~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~li~~g~i~  322 (360)
T PLN02586        243 AAIGTMDYIIDTVSAVHALGPLLGLLKVNGKLITLGLPEKPLELPIFPLVLGRKLVGGSDIGGIKETQEMLDFCAKHNIT  322 (360)
T ss_pred             hhcCCCCEEEECCCCHHHHHHHHHHhcCCcEEEEeCCCCCCCccCHHHHHhCCeEEEEcCcCCHHHHHHHHHHHHhCCCC
Confidence            333479999999984   578999999999999998543221111         011   12346789999999999998


Q ss_pred             cccCCCcccchhhHHHHHHHHHhCCCCeeEEEEe
Q 016265          357 PIIDPKGPFPFSQVVEAFSYIETNKATGKVVIHP  390 (392)
Q Consensus       357 ~~~~~t~~~~l~~~~~A~~~l~~~~~~gKvvl~~  390 (392)
                      +.+   ++|+|+|+++||+.+.+++..||+|+.+
T Consensus       323 ~~~---~~~~l~~~~~A~~~~~~~~~~gkvvi~~  353 (360)
T PLN02586        323 ADI---ELIRMDEINTAMERLAKSDVRYRFVIDV  353 (360)
T ss_pred             CcE---EEEeHHHHHHHHHHHHcCCCcEEEEEEc
Confidence            653   5799999999999999998889999875

>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase

Probab=100.00  E-value=2.9e-42  Score=336.87  Aligned_cols=299  Identities=23%  Similarity=0.303  Sum_probs=243.9

Q ss_pred             eeEEEEcccCCcceEEEeccccCCCCCCCeEEEEEeEEecChHhHHhhcCCCCCCCCCCCCcCCCceeEEEEEeCCCCCC
Q 016265           84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKE  163 (392)
Q Consensus        84 mka~v~~~~~~~~~l~~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~~~p~v~G~e~~G~V~~vG~~v~~  163 (392)
                      |||+++...+..  ++++ +++.|+|+++||+|||.++|||++|++.+.|.++.  ..+|.++|||++|+|+++|++|++
T Consensus         2 ~~a~~~~~~~~~--l~~~-~~~~P~~~~~eVlI~v~a~gi~~sD~~~~~g~~~~--~~~p~i~GhE~~G~V~~vG~~v~~   76 (368)
T TIGR02818         2 SRAAVAWAAGQP--LKIE-EVDVEMPQKGEVLVRIVATGVCHTDAFTLSGADPE--GVFPVILGHEGAGIVEAVGEGVTS   76 (368)
T ss_pred             ceEEEEecCCCC--eEEE-EecCCCCCCCeEEEEEEEecccHHHHHHhcCCCCC--CCCCeeeccccEEEEEEECCCCcc
Confidence            899998877654  7777 89999999999999999999999999999887642  357899999999999999999999


Q ss_pred             CCCCCEEEecccccc------cC---------------CC------------------CCCCcceeEEEecCCceeeCCC
Q 016265          164 FKEGDEVYGDINEKA------LE---------------GP------------------KQFGSLAEYTAVEERLLAPKPK  204 (392)
Q Consensus       164 ~~vGdrV~~~~~~~~------~~---------------~~------------------~~~G~~a~~~~v~~~~~~~iP~  204 (392)
                      |++||||++.....+      ..               |.                  ...|+|+||++++...++++|+
T Consensus        77 ~~~GdrV~~~~~~~cg~C~~c~~g~~~~C~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~~lP~  156 (368)
T TIGR02818        77 VKVGDHVIPLYTAECGECKFCLSGKTNLCVAVRETQGKGLMPDGTSRFSKDGQPIYHYMGCSTFSEYTVVPEISLAKINP  156 (368)
T ss_pred             CCCCCEEEEcCCCCCCCChhhhCCCcccccCcccccccccccCCccccccCCCcccccccCccceeeEEechhheEECCC
Confidence            999999987532100      00               00                  0137999999999999999999


Q ss_pred             CCCHHhHhccchhHHHHHHHH-HhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCC-eEEEEeCCcccHHHHHhcCCcEE
Q 016265          205 NLDFVQAAGLPLAIETAYEGL-ERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGA-SRVAATSSTRNLEFLKSLGADLA  282 (392)
Q Consensus       205 ~l~~~~aa~l~~~~~ta~~al-~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~-~vv~~~~~~~~~~~~~~~G~~~v  282 (392)
                      ++++++++.+++++.|||+++ +.+++++|++|||+| +|++|++++|+||.+ |+ ++++++.+++|++.++++|++++
T Consensus       157 ~l~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlV~G-~G~iG~~a~q~Ak~~-G~~~Vi~~~~~~~~~~~a~~~Ga~~~  234 (368)
T TIGR02818       157 AAPLEEVCLLGCGVTTGIGAVLNTAKVEEGDTVAVFG-LGGIGLSVIQGARMA-KASRIIAIDINPAKFELAKKLGATDC  234 (368)
T ss_pred             CCCHHHhhhhcchhHHHHHHHHHhcCCCCCCEEEEEC-CCHHHHHHHHHHHHc-CCCeEEEEcCCHHHHHHHHHhCCCeE
Confidence            999999999999999999998 568899999999997 799999999999994 98 68888899999999999999999


Q ss_pred             EeCCC--Ccccc----C-CCCccEEEecCcc---HHHHHHhcccC-CeEEEEcCCCC--CCc---eEE-----EEe----
Q 016265          283 IDYTK--DNFED----L-PEKFDVVYDAIGQ---CDRAVKAIKEG-GTVVALTGAVT--PPG---FRF-----VVT----  337 (392)
Q Consensus       283 i~~~~--~~~~~----~-~~~~D~vid~~G~---~~~~~~~l~~~-G~iv~~g~~~~--~~~---~~~-----~~~----  337 (392)
                      +|+.+  .++.+    . ..++|++|||+|.   +..++++++++ |+++.+|....  ...   +.+     ...    
T Consensus       235 i~~~~~~~~~~~~v~~~~~~g~d~vid~~G~~~~~~~~~~~~~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~  314 (368)
T TIGR02818       235 VNPNDYDKPIQEVIVEITDGGVDYSFECIGNVNVMRAALECCHKGWGESIIIGVAGAGQEISTRPFQLVTGRVWRGSAFG  314 (368)
T ss_pred             EcccccchhHHHHHHHHhCCCCCEEEECCCCHHHHHHHHHHhhcCCCeEEEEeccCCCCcccccHHHHhccceEEEeecc
Confidence            98764  22211    1 2379999999983   57899999886 99999986431  111   100     010    


Q ss_pred             --ecHHHHHHHHHHHHCCCcccccCCCcccchhhHHHHHHHHHhCCCCeeEEEEe
Q 016265          338 --SNGEVLKKLNPYLESGKVKPIIDPKGPFPFSQVVEAFSYIETNKATGKVVIHP  390 (392)
Q Consensus       338 --~~~~~~~~~~~~l~~g~l~~~~~~t~~~~l~~~~~A~~~l~~~~~~gKvvl~~  390 (392)
                        .....+.++++++++|++++...++++|+|+|+++||+.+++++. .|++|++
T Consensus       315 ~~~~~~~~~~~~~~~~~g~i~~~~~it~~~~l~~~~~A~~~~~~~~~-~k~~v~~  368 (368)
T TIGR02818       315 GVKGRTELPGIVEQYMKGEIALDDFVTHTMPLEDINEAFDLMHEGKS-IRTVIHY  368 (368)
T ss_pred             CCCcHHHHHHHHHHHHCCCCCchhheeEEecHHHHHHHHHHHhCCCc-eeEEeeC
Confidence              124568899999999999876667899999999999999988765 6999864

The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.

>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase

Probab=100.00  E-value=4.6e-42  Score=327.58  Aligned_cols=290  Identities=20%  Similarity=0.243  Sum_probs=227.7

Q ss_pred             ceeEEEEcccCCcceEEEeccccCCCCCCCeEEEEEeEEecC-hHhHHhhcCCCCCCC-CCCCCcCCCceeEEEEEeCCC
Q 016265           83 EMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALN-PVDGKRRQGKFKATD-SPLPTVPGYDVAGVVVKVGTQ  160 (392)
Q Consensus        83 ~mka~v~~~~~~~~~l~~~~~~~~p~~~~~eVlV~v~~~~i~-~~D~~~~~g~~~~~~-~~~p~v~G~e~~G~V~~vG~~  160 (392)
                      +|||+++.+++.   ++++ +.+.|+|++|||+||+.++||| ++|++.+.|.++... ..+|.++|||++|+|+++|++
T Consensus         1 ~~ka~~~~~~~~---l~~~-e~~~p~~~~~evlVkv~~~gi~~~~D~~~~~G~~~~~~~~~~P~i~GhE~~G~V~~vG~~   76 (308)
T TIGR01202         1 KTQAIVLSGPNQ---IELR-EVTLTPPSPGDLVVEIWYSGISTGTEKLFWNGLMPPFPGMGYPLVPGYESVGRVVEAGPD   76 (308)
T ss_pred             CceEEEEeCCCe---EEEE-EecCCCCCCCeEEEEEEEEeeccCchhHHhcCCCCCCCCCCCCccCcceeEEEEEEecCC
Confidence            479999986654   8888 8999999999999999999995 799999988764322 357999999999999999999


Q ss_pred             CCCCCCCCEEEecccccccCCCCCCCcceeEEEecCCceeeCCCCCCHHhHhccchhHHHHHHHHHhcCCCCCCeEEEEc
Q 016265          161 VKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLERTGFSAGKSILVLN  240 (392)
Q Consensus       161 v~~~~vGdrV~~~~~~~~~~~~~~~G~~a~~~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~al~~~~~~~g~~VlI~G  240 (392)
                      + +|++||||+.....+.......+|+|+||+.++++.++++|++++++. +.+. .+.|||+++++.. .+|++|+|+|
T Consensus        77 v-~~~vGdrV~~~~~~c~~~~~~~~G~~aey~~v~~~~~~~ip~~~~~~~-a~~~-~~~~a~~~~~~~~-~~~~~vlV~G  152 (308)
T TIGR01202        77 T-GFRPGDRVFVPGSNCYEDVRGLFGGASKRLVTPASRVCRLDPALGPQG-ALLA-LAATARHAVAGAE-VKVLPDLIVG  152 (308)
T ss_pred             C-CCCCCCEEEEeCccccccccccCCcccceEEcCHHHceeCCCCCCHHH-Hhhh-HHHHHHHHHHhcc-cCCCcEEEEC
Confidence            9 699999999743211110011369999999999999999999999865 4443 4679999997653 4689999997


Q ss_pred             CCCcHHHHHHHHHHHhcCCeEEEE-eCCcccHHHHHhcCCcEEEeCCCCccccCCCCccEEEecCcc---HHHHHHhccc
Q 016265          241 GSGGVGSLVIQLAKQVFGASRVAA-TSSTRNLEFLKSLGADLAIDYTKDNFEDLPEKFDVVYDAIGQ---CDRAVKAIKE  316 (392)
Q Consensus       241 a~G~vG~~aiqlak~~~G~~vv~~-~~~~~~~~~~~~~G~~~vi~~~~~~~~~~~~~~D~vid~~G~---~~~~~~~l~~  316 (392)
                       +|++|++++|+||+ +|++++++ +.+++|++.++++   .++|+.+.    ...++|++|||+|.   ++.+++++++
T Consensus       153 -~G~vG~~a~q~ak~-~G~~~v~~~~~~~~rl~~a~~~---~~i~~~~~----~~~g~Dvvid~~G~~~~~~~~~~~l~~  223 (308)
T TIGR01202       153 -HGTLGRLLARLTKA-AGGSPPAVWETNPRRRDGATGY---EVLDPEKD----PRRDYRAIYDASGDPSLIDTLVRRLAK  223 (308)
T ss_pred             -CCHHHHHHHHHHHH-cCCceEEEeCCCHHHHHhhhhc---cccChhhc----cCCCCCEEEECCCCHHHHHHHHHhhhc
Confidence             89999999999998 59986654 4566676666543   45665332    24579999999994   5889999999


Q ss_pred             CCeEEEEcCCCCCCceE----------EE--EeecHHHHHHHHHHHHCCCcccccCCCcccchhhHHHHHHHHHhCCCCe
Q 016265          317 GGTVVALTGAVTPPGFR----------FV--VTSNGEVLKKLNPYLESGKVKPIIDPKGPFPFSQVVEAFSYIETNKATG  384 (392)
Q Consensus       317 ~G~iv~~g~~~~~~~~~----------~~--~~~~~~~~~~~~~~l~~g~l~~~~~~t~~~~l~~~~~A~~~l~~~~~~g  384 (392)
                      +|+++.+|....+..++          +.  .....+.++++++++++|++++...+++.|||+|+++||+.+.++...+
T Consensus       224 ~G~iv~~G~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~g~i~~~~~it~~~~l~~~~~A~~~~~~~~~~~  303 (308)
T TIGR01202       224 GGEIVLAGFYTEPVNFDFVPAFMKEARLRIAAEWQPGDLHAVRELIESGALSLDGLITHQRPASDAAEAYMTAFSDPDCL  303 (308)
T ss_pred             CcEEEEEeecCCCcccccchhhhcceEEEEecccchhHHHHHHHHHHcCCCChhhccceeecHHHHHHHHHHHhcCcCce
Confidence            99999998654222211          11  1123567899999999999998767889999999999999988777778


Q ss_pred             eEEEE
Q 016265          385 KVVIH  389 (392)
Q Consensus       385 Kvvl~  389 (392)
                      |++|+
T Consensus       304 Kv~~~  308 (308)
T TIGR01202       304 KMILD  308 (308)
T ss_pred             EEEeC
Confidence            99874

>PLN02178 cinnamyl-alcohol dehydrogenase

Probab=100.00  E-value=7.8e-42  Score=334.10  Aligned_cols=299  Identities=22%  Similarity=0.297  Sum_probs=238.6

Q ss_pred             eeEEEEcccCCcceEEEeccccCCCCCCCeEEEEEeEEecChHhHHhhcCCCCCCCCCCCCcCCCceeEEEEEeCCCCCC
Q 016265           84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKE  163 (392)
Q Consensus        84 mka~v~~~~~~~~~l~~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~~~p~v~G~e~~G~V~~vG~~v~~  163 (392)
                      .||+.+...+..+.+++. +++.|+|+++||+|||.++|||++|++.+.|.++.  ..+|.++|||++|+|+++|++|++
T Consensus         5 ~~a~~~~~~~~~~~l~~~-~~~~p~~~~~eVlVkV~a~gic~sD~~~~~G~~~~--~~~p~i~GhE~aG~Vv~vG~~v~~   81 (375)
T PLN02178          5 NKAFGWAANDESGVLSPF-HFSRRENGENDVTVKILFCGVCHSDLHTIKNHWGF--SRYPIIPGHEIVGIATKVGKNVTK   81 (375)
T ss_pred             ceeEEEEEccCCCCceEE-eecCCCCCCCeEEEEEEEEcCchHHHHHhcCCCCC--CCCCcccCceeeEEEEEECCCCCc
Confidence            455555555544447777 78889999999999999999999999999887532  346889999999999999999999


Q ss_pred             CCCCCEEEec-----cccc--cc-------------------CCCCCCCcceeEEEecCCceeeCCCCCCHHhHhccchh
Q 016265          164 FKEGDEVYGD-----INEK--AL-------------------EGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLA  217 (392)
Q Consensus       164 ~~vGdrV~~~-----~~~~--~~-------------------~~~~~~G~~a~~~~v~~~~~~~iP~~l~~~~aa~l~~~  217 (392)
                      |++||||+..     +..+  +.                   .|...+|+|+||++++++.++++|+++++++++.++++
T Consensus        82 ~~vGdrV~~~~~~~~cg~C~~C~~g~~~~C~~~~~~~~~~~~~g~~~~G~~aey~~v~~~~~~~lP~~ls~~~aa~l~~~  161 (375)
T PLN02178         82 FKEGDRVGVGVIIGSCQSCESCNQDLENYCPKVVFTYNSRSSDGTRNQGGYSDVIVVDHRFVLSIPDGLPSDSGAPLLCA  161 (375)
T ss_pred             cCCCCEEEEcCccCCCCCChhHhCcchhcCCCccccccccccCCCcCCCccccEEEEchHHeEECCCCCCHHHcchhhcc
Confidence            9999999742     1110  00                   02223699999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcC--CCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcc-cHHHHHhcCCcEEEeCCCC-ccccC
Q 016265          218 IETAYEGLERTG--FSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTR-NLEFLKSLGADLAIDYTKD-NFEDL  293 (392)
Q Consensus       218 ~~ta~~al~~~~--~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~-~~~~~~~~G~~~vi~~~~~-~~~~~  293 (392)
                      ..|+|+++....  .++|++|+|.| +|++|++++|+||. .|+++++++.+++ +++.++++|+++++++.+. .+.+.
T Consensus       162 ~~ta~~al~~~~~~~~~g~~VlV~G-~G~vG~~avq~Ak~-~Ga~Vi~~~~~~~~~~~~a~~lGa~~~i~~~~~~~v~~~  239 (375)
T PLN02178        162 GITVYSPMKYYGMTKESGKRLGVNG-LGGLGHIAVKIGKA-FGLRVTVISRSSEKEREAIDRLGADSFLVTTDSQKMKEA  239 (375)
T ss_pred             chHHHHHHHHhCCCCCCCCEEEEEc-ccHHHHHHHHHHHH-cCCeEEEEeCChHHhHHHHHhCCCcEEEcCcCHHHHHHh
Confidence            999999996554  36899999998 79999999999999 4999888877654 4788899999999987542 22223


Q ss_pred             CCCccEEEecCcc---HHHHHHhcccCCeEEEEcCCCCCCce----------EE--EEeecHHHHHHHHHHHHCCCcccc
Q 016265          294 PEKFDVVYDAIGQ---CDRAVKAIKEGGTVVALTGAVTPPGF----------RF--VVTSNGEVLKKLNPYLESGKVKPI  358 (392)
Q Consensus       294 ~~~~D~vid~~G~---~~~~~~~l~~~G~iv~~g~~~~~~~~----------~~--~~~~~~~~~~~~~~~l~~g~l~~~  358 (392)
                      ..++|++|||+|.   ++.++++++++|+++.+|....+..+          .+  ......+.+.++++++++|++++.
T Consensus       240 ~~~~D~vid~~G~~~~~~~~~~~l~~~G~iv~vG~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~l~~~g~i~~~  319 (375)
T PLN02178        240 VGTMDFIIDTVSAEHALLPLFSLLKVSGKLVALGLPEKPLDLPIFPLVLGRKMVGGSQIGGMKETQEMLEFCAKHKIVSD  319 (375)
T ss_pred             hCCCcEEEECCCcHHHHHHHHHhhcCCCEEEEEccCCCCCccCHHHHHhCCeEEEEeCccCHHHHHHHHHHHHhCCCccc
Confidence            3479999999983   58899999999999999865322111          11  111234678999999999999875


Q ss_pred             cCCCcccchhhHHHHHHHHHhCCCCeeEEEEe
Q 016265          359 IDPKGPFPFSQVVEAFSYIETNKATGKVVIHP  390 (392)
Q Consensus       359 ~~~t~~~~l~~~~~A~~~l~~~~~~gKvvl~~  390 (392)
                      +   +.|||+|+++||+.+++++..||+|+.+
T Consensus       320 i---~~~~l~~~~~A~~~~~~~~~~gkvvi~~  348 (375)
T PLN02178        320 I---ELIKMSDINSAMDRLAKSDVRYRFVIDV  348 (375)
T ss_pred             E---EEEeHHHHHHHHHHHHcCCCceEEEEEe
Confidence            3   5799999999999999998889999875

>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent

Probab=100.00  E-value=1.4e-41  Score=333.91  Aligned_cols=298  Identities=21%  Similarity=0.291  Sum_probs=232.2

Q ss_pred             ceeEEEEcccCCcceEEEeccccCCCCC-------CCeEEEEEeEEecChHhHHhhcCCCCCCCCCCCCcCCCceeEEEE
Q 016265           83 EMKAWLYGEYGGVDVLKFDEKVTVPQVK-------EDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVV  155 (392)
Q Consensus        83 ~mka~v~~~~~~~~~l~~~~~~~~p~~~-------~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~~~p~v~G~e~~G~V~  155 (392)
                      .|||+++.++++   ++++ +++.|+|+       +|||||||.++|||++|++.+.|.++   ..+|.++|||++|+|+
T Consensus         2 ~mka~v~~~~~~---~~~~-e~~~P~~~~~~~~~~~~eVlVkv~a~gIcgsD~~~~~g~~~---~~~p~i~GhE~~G~V~   74 (393)
T TIGR02819         2 GNRGVVYLGPGK---VEVQ-DIDYPKLELPDGRKCEHGVILKVVTTNICGSDQHMVRGRTT---APTGLVLGHEITGEVI   74 (393)
T ss_pred             CceEEEEecCCc---eeEE-eccCCcccCCCccCCCCeEEEEEEEeeecHHHHHHHCCCCC---CCCCccccceeEEEEE
Confidence            589999988775   7777 89998874       68999999999999999999988653   3468999999999999


Q ss_pred             EeCCCCCCCCCCCEEEecccccc------------------------cCCC----CCCCcceeEEEecCC--ceeeCCCC
Q 016265          156 KVGTQVKEFKEGDEVYGDINEKA------------------------LEGP----KQFGSLAEYTAVEER--LLAPKPKN  205 (392)
Q Consensus       156 ~vG~~v~~~~vGdrV~~~~~~~~------------------------~~~~----~~~G~~a~~~~v~~~--~~~~iP~~  205 (392)
                      ++|++|++|++||||+......+                        ..|.    ..+|+|+||++++..  .++++|++
T Consensus        75 ~vG~~V~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~~~~g~~~~~~~~G~~aey~~v~~~~~~l~~vP~~  154 (393)
T TIGR02819        75 EKGRDVEFIKIGDIVSVPFNIACGRCRNCKEGHTGVCLNVNPARAGAAYGYVDMGGWVGGQSEYVMVPYADFNLLKFPDR  154 (393)
T ss_pred             EEcCccccccCCCEEEEecccCCCCChHHHCcCcccCcCCCCCCccceecccccCCCCCceEEEEEechhhCceEECCCc
Confidence            99999999999999976421000                        0011    136999999999964  79999998


Q ss_pred             CCH----HhHhccchhHHHHHHHHHhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEE-eCCcccHHHHHhcCCc
Q 016265          206 LDF----VQAAGLPLAIETAYEGLERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAA-TSSTRNLEFLKSLGAD  280 (392)
Q Consensus       206 l~~----~~aa~l~~~~~ta~~al~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~-~~~~~~~~~~~~~G~~  280 (392)
                      ++.    .+++.+.+++.++|+++.+.++++|++|+|.| +|++|++++|+|+. .|++++++ +.+++|+++++++|++
T Consensus       155 ~~~~~~~~~~a~l~~~~~ta~~a~~~~~~~~g~~VlV~G-~G~iG~~aiqlAk~-~Ga~~vi~~d~~~~r~~~a~~~Ga~  232 (393)
T TIGR02819       155 DQALEKIRDLTMLSDIFPTGYHGAVTAGVGPGSTVYIAG-AGPVGLAAAASAQL-LGAAVVIVGDLNPARLAQARSFGCE  232 (393)
T ss_pred             ccccccccceeeeccHHHHHHHHHHhcCCCCCCEEEEEC-CCHHHHHHHHHHHH-cCCceEEEeCCCHHHHHHHHHcCCe
Confidence            753    34566778888999999888899999999975 89999999999998 59986655 4678899999999997


Q ss_pred             EEEeCC-CCccc----cC--CCCccEEEecCcc-----------------HHHHHHhcccCCeEEEEcCCCC-CC-c---
Q 016265          281 LAIDYT-KDNFE----DL--PEKFDVVYDAIGQ-----------------CDRAVKAIKEGGTVVALTGAVT-PP-G---  331 (392)
Q Consensus       281 ~vi~~~-~~~~~----~~--~~~~D~vid~~G~-----------------~~~~~~~l~~~G~iv~~g~~~~-~~-~---  331 (392)
                      . +++. +.++.    +.  ..++|++|||+|.                 ++.++++++++|+++.+|.+.. +. .   
T Consensus       233 ~-v~~~~~~~~~~~v~~~~~~~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~G~~~~~~~~~~~~  311 (393)
T TIGR02819       233 T-VDLSKDATLPEQIEQILGEPEVDCAVDCVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIPGLYVTEDPGAVDA  311 (393)
T ss_pred             E-EecCCcccHHHHHHHHcCCCCCcEEEECCCCccccccccccccchHHHHHHHHHHhhCCCEEEEeeecCCcccccccc
Confidence            5 5543 33322    12  3479999999983                 6789999999999999987531 11 0   


Q ss_pred             ------eEEEE--------------eecHHHHHHHHHHHHCCCcccccCCC-cccchhhHHHHHHHHHhCCCCeeEEEEe
Q 016265          332 ------FRFVV--------------TSNGEVLKKLNPYLESGKVKPIIDPK-GPFPFSQVVEAFSYIETNKATGKVVIHP  390 (392)
Q Consensus       332 ------~~~~~--------------~~~~~~~~~~~~~l~~g~l~~~~~~t-~~~~l~~~~~A~~~l~~~~~~gKvvl~~  390 (392)
                            +.+..              .....++.++++++.+|++++...++ ++|+|+|+++||+.+.+++. +|++|++
T Consensus       312 ~~~~~~~~i~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~g~i~~~~~i~~~~~~l~~~~~a~~~~~~~~~-~Kvvi~~  390 (393)
T TIGR02819       312 AAKTGSLSIRFGLGWAKSHSFHTGQTPVMKYNRNLMQAILHDRVQIAKAVNVTVISLDDAPEGYAEFDAGAA-KKFVIDP  390 (393)
T ss_pred             cccccccccchHHhhccCceEEeccCChhhhHHHHHHHHHcCCCCHHHceecceecHHHHHHHHHHHhhCCc-eEEEEeC
Confidence                  00000              00013346789999999998765555 78999999999999998754 8999986


Q ss_pred             C
Q 016265          391 I  391 (392)
Q Consensus       391 ~  391 (392)
                      .
T Consensus       391 ~  391 (393)
T TIGR02819       391 H  391 (393)
T ss_pred             C
Confidence            3

Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.

>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases

Probab=100.00  E-value=1.6e-41  Score=331.82  Aligned_cols=299  Identities=24%  Similarity=0.306  Sum_probs=244.0

Q ss_pred             ceeEEEEcccCCcceEEEeccccCCCCCCCeEEEEEeEEecChHhHHhhcCCCCCCCCCCCCcCCCceeEEEEEeCCCCC
Q 016265           83 EMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVK  162 (392)
Q Consensus        83 ~mka~v~~~~~~~~~l~~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~~~p~v~G~e~~G~V~~vG~~v~  162 (392)
                      +|||+++...+..  ++++ +.+.|.|+++||+||+.++|||++|++.+.|.++.  ..+|.++|||++|+|+++|++++
T Consensus         2 ~~~a~~~~~~~~~--~~~~-~~~~P~~~~~eVlIrv~a~gi~~~D~~~~~g~~~~--~~~p~v~G~E~~G~V~~vG~~v~   76 (368)
T cd08300           2 TCKAAVAWEAGKP--LSIE-EVEVAPPKAGEVRIKILATGVCHTDAYTLSGADPE--GLFPVILGHEGAGIVESVGEGVT   76 (368)
T ss_pred             cceEEEEecCCCC--cEEE-EeecCCCCCCEEEEEEEEEEechhhHHHhcCCCcc--CCCCceeccceeEEEEEeCCCCc
Confidence            5899998776654  7777 89999999999999999999999999999887642  35789999999999999999999


Q ss_pred             CCCCCCEEEecccccc------cC---------------C------------------CCCCCcceeEEEecCCceeeCC
Q 016265          163 EFKEGDEVYGDINEKA------LE---------------G------------------PKQFGSLAEYTAVEERLLAPKP  203 (392)
Q Consensus       163 ~~~vGdrV~~~~~~~~------~~---------------~------------------~~~~G~~a~~~~v~~~~~~~iP  203 (392)
                      +|++||||++.....+      ..               |                  ....|+|+||+.+++..++++|
T Consensus        77 ~~~vGdrV~~~~~~~cg~C~~c~~g~~~~c~~~~~~~~~g~~~~g~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~~iP  156 (368)
T cd08300          77 SVKPGDHVIPLYTPECGECKFCKSGKTNLCQKIRATQGKGLMPDGTSRFSCKGKPIYHFMGTSTFSEYTVVAEISVAKIN  156 (368)
T ss_pred             cCCCCCEEEEcCCCCCCCChhhcCCCcCcCCCccccccccccCCCccccccCCcccccccccccceeEEEEchhceEeCC
Confidence            9999999987521100      00               0                  0013689999999999999999


Q ss_pred             CCCCHHhHhccchhHHHHHHHH-HhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCC-eEEEEeCCcccHHHHHhcCCcE
Q 016265          204 KNLDFVQAAGLPLAIETAYEGL-ERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGA-SRVAATSSTRNLEFLKSLGADL  281 (392)
Q Consensus       204 ~~l~~~~aa~l~~~~~ta~~al-~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~-~vv~~~~~~~~~~~~~~~G~~~  281 (392)
                      +++++++++.+++++.|||+++ +.+.+++|++|||+| +|++|++++|+||.+ |+ ++++++.+++|++.++++|+++
T Consensus       157 ~~l~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlV~G-~G~vG~~a~~~ak~~-G~~~vi~~~~~~~~~~~~~~lGa~~  234 (368)
T cd08300         157 PEAPLDKVCLLGCGVTTGYGAVLNTAKVEPGSTVAVFG-LGAVGLAVIQGAKAA-GASRIIGIDINPDKFELAKKFGATD  234 (368)
T ss_pred             CCCChhhhhhhccchhhhHHHHHHhcCCCCCCEEEEEC-CCHHHHHHHHHHHHc-CCCeEEEEeCCHHHHHHHHHcCCCE
Confidence            9999999999999999999987 568899999999997 799999999999994 99 6888889999999999999999


Q ss_pred             EEeCCCC--cccc----C-CCCccEEEecCcc---HHHHHHhcccC-CeEEEEcCCCC--CCc-----e----E---EEE
Q 016265          282 AIDYTKD--NFED----L-PEKFDVVYDAIGQ---CDRAVKAIKEG-GTVVALTGAVT--PPG-----F----R---FVV  336 (392)
Q Consensus       282 vi~~~~~--~~~~----~-~~~~D~vid~~G~---~~~~~~~l~~~-G~iv~~g~~~~--~~~-----~----~---~~~  336 (392)
                      ++|+.+.  ++.+    . .+++|+||||+|.   ++.++++++++ |+++.+|....  ...     +    .   +..
T Consensus       235 ~i~~~~~~~~~~~~v~~~~~~g~d~vid~~g~~~~~~~a~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~g~~~  314 (368)
T cd08300         235 CVNPKDHDKPIQQVLVEMTDGGVDYTFECIGNVKVMRAALEACHKGWGTSVIIGVAAAGQEISTRPFQLVTGRVWKGTAF  314 (368)
T ss_pred             EEcccccchHHHHHHHHHhCCCCcEEEECCCChHHHHHHHHhhccCCCeEEEEccCCCCCccccCHHHHhhcCeEEEEEe
Confidence            9998653  2322    1 2379999999983   57899999987 99999986521  110     0    0   001


Q ss_pred             --eecHHHHHHHHHHHHCCCcccccCCCcccchhhHHHHHHHHHhCCCCeeEEEE
Q 016265          337 --TSNGEVLKKLNPYLESGKVKPIIDPKGPFPFSQVVEAFSYIETNKATGKVVIH  389 (392)
Q Consensus       337 --~~~~~~~~~~~~~l~~g~l~~~~~~t~~~~l~~~~~A~~~l~~~~~~gKvvl~  389 (392)
                        ....+.+.++++++++|++++...++++|+|+|+++||+.+++++. .|++++
T Consensus       315 ~~~~~~~~~~~~~~~~~~g~l~~~~~i~~~~~le~~~~A~~~~~~~~~-~k~~~~  368 (368)
T cd08300         315 GGWKSRSQVPKLVEDYMKGKIKVDEFITHTMPLDEINEAFDLMHAGKS-IRTVVK  368 (368)
T ss_pred             cccCcHHHHHHHHHHHHcCCCChhhceeeeEcHHHHHHHHHHHhCCCC-ceeeeC
Confidence              1134678899999999999876667899999999999999988875 598874

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim

>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=7.3e-42  Score=308.63  Aligned_cols=303  Identities=23%  Similarity=0.299  Sum_probs=253.1

Q ss_pred             CCCcceeEEEEcccCCcceEEEeccccCCCCCCCeEEEEEeEEecChHhHHhhcCCCCCCCCCCCCcCCCceeEEEEEeC
Q 016265           79 TVPSEMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVG  158 (392)
Q Consensus        79 ~~p~~mka~v~~~~~~~~~l~~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~~~p~v~G~e~~G~V~~vG  158 (392)
                      ..+.++||.|..+++++  |.++ |+.+++|+..||+||+.++++|++|.+.+.|..+  ...+|.++|||++|+|+.+|
T Consensus         3 gkvI~CKAAV~w~a~~P--L~IE-ei~V~pPka~EVRIKI~~t~vCHTD~~~~~g~~~--~~~fP~IlGHEaaGIVESvG   77 (375)
T KOG0022|consen    3 GKVITCKAAVAWEAGKP--LVIE-EIEVAPPKAHEVRIKILATGVCHTDAYVWSGKDP--EGLFPVILGHEAAGIVESVG   77 (375)
T ss_pred             CCceEEeEeeeccCCCC--eeEE-EEEeCCCCCceEEEEEEEEeeccccceeecCCCc--cccCceEecccceeEEEEec
Confidence            35678999999999988  7777 8999999999999999999999999999999863  45689999999999999999


Q ss_pred             CCCCCCCCCCEEEecccccc---------------------------cCCC-------------CCCCcceeEEEecCCc
Q 016265          159 TQVKEFKEGDEVYGDINEKA---------------------------LEGP-------------KQFGSLAEYTAVEERL  198 (392)
Q Consensus       159 ~~v~~~~vGdrV~~~~~~~~---------------------------~~~~-------------~~~G~~a~~~~v~~~~  198 (392)
                      ++|+++++||+|+..+...+                           .+|.             -...+|+||.+++...
T Consensus        78 egV~~vk~GD~Viplf~p~CgeCk~C~s~ktNlC~~~~~~~~~~~~~~DgtSRF~~~gk~iyHfmg~StFsEYTVv~~~~  157 (375)
T KOG0022|consen   78 EGVTTVKPGDHVIPLFTPQCGECKFCKSPKTNLCEKFRADNGKGGMPYDGTSRFTCKGKPIYHFMGTSTFSEYTVVDDIS  157 (375)
T ss_pred             CCccccCCCCEEeeccccCCCCcccccCCCCChhhhhcccccccccccCCceeeeeCCCceEEecccccceeEEEeecce
Confidence            99999999999985432100                           0110             0124899999999999


Q ss_pred             eeeCCCCCCHHhHhccchhHHHHHHHH-HhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCC-eEEEEeCCcccHHHHHh
Q 016265          199 LAPKPKNLDFVQAAGLPLAIETAYEGL-ERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGA-SRVAATSSTRNLEFLKS  276 (392)
Q Consensus       199 ~~~iP~~l~~~~aa~l~~~~~ta~~al-~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~-~vv~~~~~~~~~~~~~~  276 (392)
                      ++++++..+++.++.+.|.+.|+|.|. +.+++++|++|.|+| .|++|++++|-||.. || ++|.++.+++|.+.+++
T Consensus       158 v~kId~~aPl~kvcLLgCGvsTG~GAa~~~Akv~~GstvAVfG-LG~VGLav~~Gaka~-GAsrIIgvDiN~~Kf~~ak~  235 (375)
T KOG0022|consen  158 VAKIDPSAPLEKVCLLGCGVSTGYGAAWNTAKVEPGSTVAVFG-LGGVGLAVAMGAKAA-GASRIIGVDINPDKFEKAKE  235 (375)
T ss_pred             eEecCCCCChhheeEeeccccccchhhhhhcccCCCCEEEEEe-cchHHHHHHHhHHhc-CcccEEEEecCHHHHHHHHh
Confidence            999999999999999999999999976 679999999999998 999999999999995 77 56667789999999999


Q ss_pred             cCCcEEEeCCCC--cccc----C-CCCccEEEecCcc---HHHHHHhcccC-CeEEEEcCCCCCCceE-----EEE----
Q 016265          277 LGADLAIDYTKD--NFED----L-PEKFDVVYDAIGQ---CDRAVKAIKEG-GTVVALTGAVTPPGFR-----FVV----  336 (392)
Q Consensus       277 ~G~~~vi~~~~~--~~~~----~-~~~~D~vid~~G~---~~~~~~~l~~~-G~iv~~g~~~~~~~~~-----~~~----  336 (392)
                      +|+++++|+.+.  ...+    + ..|+|+.|||+|.   +.+++.+...| |+-|.+|.......+.     ++.    
T Consensus       236 fGaTe~iNp~d~~~~i~evi~EmTdgGvDysfEc~G~~~~m~~al~s~h~GwG~sv~iGv~~~~~~i~~~p~~l~~GR~~  315 (375)
T KOG0022|consen  236 FGATEFINPKDLKKPIQEVIIEMTDGGVDYSFECIGNVSTMRAALESCHKGWGKSVVIGVAAAGQEISTRPFQLVTGRTW  315 (375)
T ss_pred             cCcceecChhhccccHHHHHHHHhcCCceEEEEecCCHHHHHHHHHHhhcCCCeEEEEEecCCCcccccchhhhccccEE
Confidence            999999998731  1222    1 4689999999995   57888888888 9999998765332221     110    


Q ss_pred             -------eecHHHHHHHHHHHHCCCcccccCCCcccchhhHHHHHHHHHhCCCCeeEEEE
Q 016265          337 -------TSNGEVLKKLNPYLESGKVKPIIDPKGPFPFSQVVEAFSYIETNKATGKVVIH  389 (392)
Q Consensus       337 -------~~~~~~~~~~~~~l~~g~l~~~~~~t~~~~l~~~~~A~~~l~~~~~~gKvvl~  389 (392)
                             .....++..+++...+++++...++||++||+++++||+.|.+|+.. +.|+.
T Consensus       316 ~Gs~FGG~K~~~~iP~lV~~y~~~~l~ld~~ITh~l~f~~In~AF~ll~~Gksi-R~vl~  374 (375)
T KOG0022|consen  316 KGSAFGGFKSKSDIPKLVKDYMKKKLNLDEFITHELPFEEINKAFDLLHEGKSI-RCVLW  374 (375)
T ss_pred             EEEecccccchhhhhHHHHHHHhCccchhhhhhcccCHHHHHHHHHHHhCCceE-EEEEe
Confidence                   11346788999999999999998999999999999999999999886 77765

>PLN02827 Alcohol dehydrogenase-like

Probab=100.00  E-value=3.8e-41  Score=329.99  Aligned_cols=298  Identities=21%  Similarity=0.262  Sum_probs=241.7

Q ss_pred             cceeEEEEcccCCcceEEEeccccCCCCCCCeEEEEEeEEecChHhHHhhcCCCCCCCCCCCCcCCCceeEEEEEeCCCC
Q 016265           82 SEMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQV  161 (392)
Q Consensus        82 ~~mka~v~~~~~~~~~l~~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~~~p~v~G~e~~G~V~~vG~~v  161 (392)
                      ..|||+++.++++.  ++++ +.+.|+|+++||+|||.++|||++|++.+.|..     .+|.++|||++|+|+++|++|
T Consensus        11 ~~mka~~~~~~~~~--~~~~-e~~~P~~~~~eVlVkv~~~gic~sD~~~~~g~~-----~~p~i~GhE~~G~V~~vG~~v   82 (378)
T PLN02827         11 ITCRAAVAWGAGEA--LVME-EVEVSPPQPLEIRIKVVSTSLCRSDLSAWESQA-----LFPRIFGHEASGIVESIGEGV   82 (378)
T ss_pred             ceeEEEEEecCCCC--ceEE-EeecCCCCCCEEEEEEEEEecChhHHHHhcCCC-----CCCeeecccceEEEEEcCCCC
Confidence            35999999876543  7777 899999999999999999999999999887642     357899999999999999999


Q ss_pred             CCCCCCCEEEecccccc------cC----------------------------CC-----CCCCcceeEEEecCCceeeC
Q 016265          162 KEFKEGDEVYGDINEKA------LE----------------------------GP-----KQFGSLAEYTAVEERLLAPK  202 (392)
Q Consensus       162 ~~~~vGdrV~~~~~~~~------~~----------------------------~~-----~~~G~~a~~~~v~~~~~~~i  202 (392)
                      ++|++||||++.....+      ..                            |.     ...|+|+||+.+++..++++
T Consensus        83 ~~~~~GdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~G~~aeyv~v~~~~~~~i  162 (378)
T PLN02827         83 TEFEKGDHVLTVFTGECGSCRHCISGKSNMCQVLGLERKGVMHSDQKTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKV  162 (378)
T ss_pred             cccCCCCEEEEecCCCCCCChhhhCcCcccccCccccccccccCCCcccccccCcccccccccccceeeEEechhheEEC
Confidence            99999999987532100      00                            00     02489999999999999999


Q ss_pred             CCCCCHHhHhccchhHHHHHHHH-HhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCe-EEEEeCCcccHHHHHhcCCc
Q 016265          203 PKNLDFVQAAGLPLAIETAYEGL-ERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGAS-RVAATSSTRNLEFLKSLGAD  280 (392)
Q Consensus       203 P~~l~~~~aa~l~~~~~ta~~al-~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~-vv~~~~~~~~~~~~~~~G~~  280 (392)
                      |+++++++++.+++++.++|+++ +.+++++|++|||+| +|++|++++|+||.+ |++ +++++.+++|+++++++|++
T Consensus       163 P~~l~~~~aa~l~~~~~~a~~~~~~~~~~~~g~~VlV~G-~G~vG~~~iqlak~~-G~~~vi~~~~~~~~~~~a~~lGa~  240 (378)
T PLN02827        163 DPLAPLHKICLLSCGVAAGLGAAWNVADVSKGSSVVIFG-LGTVGLSVAQGAKLR-GASQIIGVDINPEKAEKAKTFGVT  240 (378)
T ss_pred             CCCCCHHHhhhhcchhHhhHHHHHhhcCCCCCCEEEEEC-CCHHHHHHHHHHHHc-CCCeEEEECCCHHHHHHHHHcCCc
Confidence            99999999998888888999877 457899999999998 799999999999985 986 55566799999999999999


Q ss_pred             EEEeCCCC--cccc----C-CCCccEEEecCcc---HHHHHHhcccC-CeEEEEcCCCCCCce-----------EEE--E
Q 016265          281 LAIDYTKD--NFED----L-PEKFDVVYDAIGQ---CDRAVKAIKEG-GTVVALTGAVTPPGF-----------RFV--V  336 (392)
Q Consensus       281 ~vi~~~~~--~~~~----~-~~~~D~vid~~G~---~~~~~~~l~~~-G~iv~~g~~~~~~~~-----------~~~--~  336 (392)
                      +++++.+.  ++.+    . .+++|++||++|.   +..++++++++ |+++.+|.......+           .+.  .
T Consensus       241 ~~i~~~~~~~~~~~~v~~~~~~g~d~vid~~G~~~~~~~~l~~l~~g~G~iv~~G~~~~~~~~~~~~~~~~~~~~i~g~~  320 (378)
T PLN02827        241 DFINPNDLSEPIQQVIKRMTGGGADYSFECVGDTGIATTALQSCSDGWGLTVTLGVPKAKPEVSAHYGLFLSGRTLKGSL  320 (378)
T ss_pred             EEEcccccchHHHHHHHHHhCCCCCEEEECCCChHHHHHHHHhhccCCCEEEEECCcCCCccccccHHHHhcCceEEeee
Confidence            99988652  3322    1 3379999999993   58899999998 999999875421111           110  0


Q ss_pred             e---ecHHHHHHHHHHHHCCCcccccCCCcccchhhHHHHHHHHHhCCCCeeEEEEe
Q 016265          337 T---SNGEVLKKLNPYLESGKVKPIIDPKGPFPFSQVVEAFSYIETNKATGKVVIHP  390 (392)
Q Consensus       337 ~---~~~~~~~~~~~~l~~g~l~~~~~~t~~~~l~~~~~A~~~l~~~~~~gKvvl~~  390 (392)
                      .   .....++++++++++|++++...++++|+|+|+++||+.+++++. +|+||.+
T Consensus       321 ~~~~~~~~~~~~~~~~~~~g~i~~~~~i~~~~~le~~~~A~~~~~~~~~-~k~vi~~  376 (378)
T PLN02827        321 FGGWKPKSDLPSLVDKYMNKEIMIDEFITHNLSFDEINKAFELMREGKC-LRCVIHM  376 (378)
T ss_pred             cCCCchhhhHHHHHHHHHcCCCChHHheEEEecHHHHHHHHHHHHCCCc-eEEEEEe
Confidence            0   123467889999999999986567899999999999999998876 6999986

>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1

Probab=100.00  E-value=6.8e-41  Score=321.72  Aligned_cols=291  Identities=26%  Similarity=0.379  Sum_probs=240.3

Q ss_pred             eeEEEEcccCCc---ceEEEeccccCCCCCCCeEEEEEeEEecChHhHHhhcCCCCCCCCCCCCcCCCceeEEEEEeCCC
Q 016265           84 MKAWLYGEYGGV---DVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQ  160 (392)
Q Consensus        84 mka~v~~~~~~~---~~l~~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~~~p~v~G~e~~G~V~~vG~~  160 (392)
                      |||+++.+++.+   +.+++. +.+.|.|+++||+||+.++|+|++|++.+.|.++. ...+|.++|||++|+|+++|++
T Consensus         1 m~a~~~~~~~~~~~~~~~~~~-~~~~p~~~~~evlv~v~~~gi~~~d~~~~~g~~~~-~~~~p~v~G~e~~G~V~~vG~~   78 (324)
T cd08291           1 MKALLLEEYGKPLEVKELSLP-EPEVPEPGPGEVLIKVEAAPINPSDLGFLKGQYGS-TKALPVPPGFEGSGTVVAAGGG   78 (324)
T ss_pred             CeEEEEeecCCCccccEEEec-ccCCCCCCCCeEEEEEEEccCCHHHHHHhcCcCCC-CCCCCcCCCcceEEEEEEECCC
Confidence            799999988865   468888 89999999999999999999999999999887642 2346889999999999999999


Q ss_pred             CCC-CCCCCEEEecccccccCCCCCCCcceeEEEecCCceeeCCCCCCHHhHhccchhHHHHHHHHHhcCCCCCCeEEEE
Q 016265          161 VKE-FKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLERTGFSAGKSILVL  239 (392)
Q Consensus       161 v~~-~~vGdrV~~~~~~~~~~~~~~~G~~a~~~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~al~~~~~~~g~~VlI~  239 (392)
                      +++ |++||+|++...        .+|+|+||+.++++.++++|+++++++++.+++...|||..++.... ++++++|+
T Consensus        79 v~~~~~vGd~V~~~~~--------~~g~~a~~~~v~~~~~~~iP~~~~~~~aa~~~~~~~ta~~~~~~~~~-~~~~vlv~  149 (324)
T cd08291          79 PLAQSLIGKRVAFLAG--------SYGTYAEYAVADAQQCLPLPDGVSFEQGASSFVNPLTALGMLETARE-EGAKAVVH  149 (324)
T ss_pred             ccccCCCCCEEEecCC--------CCCcchheeeecHHHeEECCCCCCHHHHhhhcccHHHHHHHHHhhcc-CCCcEEEE
Confidence            996 999999998542        14999999999999999999999999999888888899866655555 56667666


Q ss_pred             -cCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCCcccc----C--CCCccEEEecCcc--HHHH
Q 016265          240 -NGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFED----L--PEKFDVVYDAIGQ--CDRA  310 (392)
Q Consensus       240 -Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~~----~--~~~~D~vid~~G~--~~~~  310 (392)
                       ||+|++|++++|+||. .|+++++++++++|+++++++|+++++++...++.+    .  .+++|++||++|.  ....
T Consensus       150 ~~g~g~vG~~a~q~a~~-~G~~vi~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~v~~~~~~~~~d~vid~~g~~~~~~~  228 (324)
T cd08291         150 TAAASALGRMLVRLCKA-DGIKVINIVRRKEQVDLLKKIGAEYVLNSSDPDFLEDLKELIAKLNATIFFDAVGGGLTGQI  228 (324)
T ss_pred             ccCccHHHHHHHHHHHH-cCCEEEEEeCCHHHHHHHHHcCCcEEEECCCccHHHHHHHHhCCCCCcEEEECCCcHHHHHH
Confidence             7899999999999999 599999999999999999999999999987765532    1  3479999999984  5678


Q ss_pred             HHhcccCCeEEEEcCCCCC----C--------ceEEEE--------eecHHHHHHHHHHHHCCCcccccCCCcccchhhH
Q 016265          311 VKAIKEGGTVVALTGAVTP----P--------GFRFVV--------TSNGEVLKKLNPYLESGKVKPIIDPKGPFPFSQV  370 (392)
Q Consensus       311 ~~~l~~~G~iv~~g~~~~~----~--------~~~~~~--------~~~~~~~~~~~~~l~~g~l~~~~~~t~~~~l~~~  370 (392)
                      +++++++|+++.+|.....    .        .+.+..        ......+++++++++ |.+++.  ++++|+|+|+
T Consensus       229 ~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--i~~~~~l~~~  305 (324)
T cd08291         229 LLAMPYGSTLYVYGYLSGKLDEPIDPVDLIFKNKSIEGFWLTTWLQKLGPEVVKKLKKLVK-TELKTT--FASRYPLALT  305 (324)
T ss_pred             HHhhCCCCEEEEEEecCCCCcccCCHHHHhhcCcEEEEEEHHHhhcccCHHHHHHHHHHHh-Cccccc--eeeEEcHHHH
Confidence            9999999999999753211    1        111111        012456788888988 888765  4588999999


Q ss_pred             HHHHHHHHhCCCCeeEEEE
Q 016265          371 VEAFSYIETNKATGKVVIH  389 (392)
Q Consensus       371 ~~A~~~l~~~~~~gKvvl~  389 (392)
                      .+||+.+++++..||+++.
T Consensus       306 ~~a~~~~~~~~~~Gkvv~~  324 (324)
T cd08291         306 LEAIAFYSKNMSTGKKLLI  324 (324)
T ss_pred             HHHHHHHHhCCCCCeEEeC
Confidence            9999999999989999873

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin

>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase

Probab=100.00  E-value=3.1e-41  Score=329.87  Aligned_cols=299  Identities=20%  Similarity=0.237  Sum_probs=243.9

Q ss_pred             ceeEEEEcccCCcceEEEeccccCCCCCCCeEEEEEeEEecChHhHHhhcCCCCCCCCCCCCcCCCceeEEEEEeCCCCC
Q 016265           83 EMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVK  162 (392)
Q Consensus        83 ~mka~v~~~~~~~~~l~~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~~~p~v~G~e~~G~V~~vG~~v~  162 (392)
                      +|||+++.+.+..  ++++ +++.|+|+++||+||+.++|||++|++.+.|..+  ...+|.++|||++|+|+++|++|+
T Consensus         2 ~~ka~~~~~~~~~--~~l~-~~~~p~~~~~evlIkv~a~gi~~~D~~~~~g~~~--~~~~p~i~G~e~~G~V~~vG~~v~   76 (369)
T cd08301           2 TCKAAVAWEAGKP--LVIE-EVEVAPPQAMEVRIKILHTSLCHTDVYFWEAKGQ--TPLFPRILGHEAAGIVESVGEGVT   76 (369)
T ss_pred             ccEEEEEecCCCC--cEEE-EeeCCCCCCCeEEEEEEEEeeCchhHHHhcCCCC--CCCCCcccccccceEEEEeCCCCC
Confidence            6899999877654  7788 8999999999999999999999999999988754  245789999999999999999999


Q ss_pred             CCCCCCEEEecccccc------cC-----------------------------C-----CCCCCcceeEEEecCCceeeC
Q 016265          163 EFKEGDEVYGDINEKA------LE-----------------------------G-----PKQFGSLAEYTAVEERLLAPK  202 (392)
Q Consensus       163 ~~~vGdrV~~~~~~~~------~~-----------------------------~-----~~~~G~~a~~~~v~~~~~~~i  202 (392)
                      +|++||||++.....+      ..                             |     ....|+|+||+.++...++++
T Consensus        77 ~~~~GdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~~i  156 (369)
T cd08301          77 DLKPGDHVLPVFTGECKECRHCKSEKSNMCDLLRINTDRGVMINDGKSRFSINGKPIYHFVGTSTFSEYTVVHVGCVAKI  156 (369)
T ss_pred             ccccCCEEEEccCCCCCCCchhcCCCcccCcCcccccccccccCCCccccccCCcceeeeeccccceeEEEEecccEEEC
Confidence            9999999987532100      00                             0     002488999999999999999


Q ss_pred             CCCCCHHhHhccchhHHHHHHHH-HhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCC-eEEEEeCCcccHHHHHhcCCc
Q 016265          203 PKNLDFVQAAGLPLAIETAYEGL-ERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGA-SRVAATSSTRNLEFLKSLGAD  280 (392)
Q Consensus       203 P~~l~~~~aa~l~~~~~ta~~al-~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~-~vv~~~~~~~~~~~~~~~G~~  280 (392)
                      |+++++++++.+++++.|+|+++ +..++++|++|||+| +|++|++++|+||. .|+ ++++++++++|+++++++|++
T Consensus       157 P~~~~~~~aa~~~~~~~ta~~~~~~~~~~~~g~~VlV~G-~g~vG~~a~q~ak~-~G~~~vi~~~~~~~~~~~~~~~Ga~  234 (369)
T cd08301         157 NPEAPLDKVCLLSCGVSTGLGAAWNVAKVKKGSTVAIFG-LGAVGLAVAEGARI-RGASRIIGVDLNPSKFEQAKKFGVT  234 (369)
T ss_pred             CCCCCHHHhhhhcchhhHHHHHHHhhcCCCCCCEEEEEC-CCHHHHHHHHHHHH-cCCCeEEEEcCCHHHHHHHHHcCCc
Confidence            99999999999999999999987 458899999999997 79999999999998 498 688888999999999999999


Q ss_pred             EEEeCCCC--ccc----c-CCCCccEEEecCcc---HHHHHHhcccC-CeEEEEcCCCCCC--ce---------EEEE--
Q 016265          281 LAIDYTKD--NFE----D-LPEKFDVVYDAIGQ---CDRAVKAIKEG-GTVVALTGAVTPP--GF---------RFVV--  336 (392)
Q Consensus       281 ~vi~~~~~--~~~----~-~~~~~D~vid~~G~---~~~~~~~l~~~-G~iv~~g~~~~~~--~~---------~~~~--  336 (392)
                      .++++.+.  .+.    + ..+++|++|||+|.   +..++++++++ |+++.+|....+.  .+         .+..  
T Consensus       235 ~~i~~~~~~~~~~~~v~~~~~~~~d~vid~~G~~~~~~~~~~~~~~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~  314 (369)
T cd08301         235 EFVNPKDHDKPVQEVIAEMTGGGVDYSFECTGNIDAMISAFECVHDGWGVTVLLGVPHKDAVFSTHPMNLLNGRTLKGTL  314 (369)
T ss_pred             eEEcccccchhHHHHHHHHhCCCCCEEEECCCChHHHHHHHHHhhcCCCEEEEECcCCCCcccccCHHHHhcCCeEEEEe
Confidence            99987652  222    1 13479999999983   57889999996 9999998654211  11         1111  


Q ss_pred             --e-ecHHHHHHHHHHHHCCCcccccCCCcccchhhHHHHHHHHHhCCCCeeEEEE
Q 016265          337 --T-SNGEVLKKLNPYLESGKVKPIIDPKGPFPFSQVVEAFSYIETNKATGKVVIH  389 (392)
Q Consensus       337 --~-~~~~~~~~~~~~l~~g~l~~~~~~t~~~~l~~~~~A~~~l~~~~~~gKvvl~  389 (392)
                        . .....++++++++.+|+++....+++.|+|+|+++||+.+++++. .|++|+
T Consensus       315 ~~~~~~~~~~~~~~~~~~~g~~~~~~~i~~~~~l~~~~~A~~~~~~~~~-~k~~~~  369 (369)
T cd08301         315 FGGYKPKTDLPNLVEKYMKKELELEKFITHELPFSEINKAFDLLLKGEC-LRCILH  369 (369)
T ss_pred             cCCCChHHHHHHHHHHHHcCCCCcHHheeeeecHHHHHHHHHHHHCCCc-eeEEeC
Confidence              0 123468899999999998876567899999999999999999886 488874

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the

>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional

Probab=100.00  E-value=1.2e-40  Score=323.03  Aligned_cols=297  Identities=21%  Similarity=0.274  Sum_probs=238.2

Q ss_pred             eeEEEEcccCCcceEEEeccccCCCC-CCCeEEEEEeEEecChHhHHhhcCCCCCCCCCCCCcCCCceeEEEEEeCCCCC
Q 016265           84 MKAWLYGEYGGVDVLKFDEKVTVPQV-KEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVK  162 (392)
Q Consensus        84 mka~v~~~~~~~~~l~~~~~~~~p~~-~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~~~p~v~G~e~~G~V~~vG~~v~  162 (392)
                      |||+++++++.   ++++ +.+.|.| +++||+|||.++|+|++|++.+.+..   ...+|.++|||++|+|+++|++|+
T Consensus         1 Mka~~~~~~~~---~~~~-~~~~P~~~~~~evlV~v~~~gi~~~D~~~~~~~~---~~~~p~i~G~e~~G~V~~vG~~v~   73 (347)
T PRK10309          1 MKSVVNDTDGI---VRVA-ESPIPEIKHQDDVLVKVASSGLCGSDIPRIFKNG---AHYYPITLGHEFSGYVEAVGSGVD   73 (347)
T ss_pred             CceEEEeCCCc---eEEE-ECCCCCCCCCCEEEEEEEEEEEchhcHHHHhCCC---CCCCCcccccceEEEEEEeCCCCC
Confidence            79999987764   7888 8999987 59999999999999999987543211   123578999999999999999999


Q ss_pred             CCCCCCEEEecccccc------------------cCCCCCCCcceeEEEecCCceeeCCCCCCHHhHhccchhHHHHHHH
Q 016265          163 EFKEGDEVYGDINEKA------------------LEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEG  224 (392)
Q Consensus       163 ~~~vGdrV~~~~~~~~------------------~~~~~~~G~~a~~~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~a  224 (392)
                      +|++||||++.....+                  ..+...+|+|+||+.++++.++++|+++++++++.+. .+.++|++
T Consensus        74 ~~~vGd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~g~~~~G~~aey~~v~~~~~~~lP~~~s~~~aa~~~-~~~~~~~~  152 (347)
T PRK10309         74 DLHPGDAVACVPLLPCFTCPECLRGFYSLCAKYDFIGSRRDGGNAEYIVVKRKNLFALPTDMPIEDGAFIE-PITVGLHA  152 (347)
T ss_pred             CCCCCCEEEECCCcCCCCCcchhCcCcccCCCcceeccCCCCccceeEEeehHHeEECcCCCCHHHhhhhh-HHHHHHHH
Confidence            9999999987532110                  0122246999999999999999999999999998763 34458888


Q ss_pred             HHhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCe-EEEEeCCcccHHHHHhcCCcEEEeCCCCcccc---C--CCCcc
Q 016265          225 LERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGAS-RVAATSSTRNLEFLKSLGADLAIDYTKDNFED---L--PEKFD  298 (392)
Q Consensus       225 l~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~-vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~~---~--~~~~D  298 (392)
                      ++...+++|++|+|+| +|++|++++|+|+.+ |++ +++++++++|+++++++|+++++++++.+..+   .  ..++|
T Consensus       153 ~~~~~~~~g~~vlV~G-~g~vG~~~~~~a~~~-G~~~v~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~d  230 (347)
T PRK10309        153 FHLAQGCEGKNVIIIG-AGTIGLLAIQCAVAL-GAKSVTAIDINSEKLALAKSLGAMQTFNSREMSAPQIQSVLRELRFD  230 (347)
T ss_pred             HHhcCCCCCCEEEEEC-CCHHHHHHHHHHHHc-CCCeEEEECCCHHHHHHHHHcCCceEecCcccCHHHHHHHhcCCCCC
Confidence            8778889999999997 799999999999995 997 56677899999999999999999876544221   1  24688


Q ss_pred             -EEEecCcc---HHHHHHhcccCCeEEEEcCCCCCCc-------------eEEE--Eee-----cHHHHHHHHHHHHCCC
Q 016265          299 -VVYDAIGQ---CDRAVKAIKEGGTVVALTGAVTPPG-------------FRFV--VTS-----NGEVLKKLNPYLESGK  354 (392)
Q Consensus       299 -~vid~~G~---~~~~~~~l~~~G~iv~~g~~~~~~~-------------~~~~--~~~-----~~~~~~~~~~~l~~g~  354 (392)
                       ++|||+|.   +..++++++++|+++.+|.......             +.+.  ...     ..+.++++++++++|+
T Consensus       231 ~~v~d~~G~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~g~  310 (347)
T PRK10309        231 QLILETAGVPQTVELAIEIAGPRAQLALVGTLHHDLHLTSATFGKILRKELTVIGSWMNYSSPWPGQEWETASRLLTERK  310 (347)
T ss_pred             eEEEECCCCHHHHHHHHHHhhcCCEEEEEccCCCCcccChhhhhHHhhcCcEEEEEeccccCCcchhHHHHHHHHHHcCC
Confidence             99999993   5889999999999999986532110             1111  000     1367889999999999


Q ss_pred             cccccCCCcccchhhHHHHHHHHHhCCCCeeEEEEe
Q 016265          355 VKPIIDPKGPFPFSQVVEAFSYIETNKATGKVVIHP  390 (392)
Q Consensus       355 l~~~~~~t~~~~l~~~~~A~~~l~~~~~~gKvvl~~  390 (392)
                      ++....+++.|+|+|+++||+.+.+++..||+|+++
T Consensus       311 i~~~~~i~~~~~l~~~~~A~~~~~~~~~~gKvvv~~  346 (347)
T PRK10309        311 LSLEPLIAHRGSFESFAQAVRDLAGNPMPGKVLLQI  346 (347)
T ss_pred             CCchhheEEEeeHHHHHHHHHHHhcCCcceEEEEeC
Confidence            986666789999999999999999998889999976

>PLN02514 cinnamyl-alcohol dehydrogenase

Probab=100.00  E-value=3.3e-40  Score=321.12  Aligned_cols=300  Identities=23%  Similarity=0.320  Sum_probs=242.1

Q ss_pred             cceeEEEEcccCCcceEEEeccccCCCCCCCeEEEEEeEEecChHhHHhhcCCCCCCCCCCCCcCCCceeEEEEEeCCCC
Q 016265           82 SEMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQV  161 (392)
Q Consensus        82 ~~mka~v~~~~~~~~~l~~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~~~p~v~G~e~~G~V~~vG~~v  161 (392)
                      ..++|+++.+++..  ++++ +++.|+|+++||+||+.+++||++|++.+.|.++.  ..+|.++|||++|+|+++|+++
T Consensus         8 ~~~~~~~~~~~~~~--~~~~-~~~~p~~~~~eVlVrv~a~gi~~~D~~~~~g~~~~--~~~p~i~G~E~~G~Vv~vG~~v   82 (357)
T PLN02514          8 KKTTGWAARDPSGH--LSPY-TYTLRKTGPEDVVIKVIYCGICHTDLHQIKNDLGM--SNYPMVPGHEVVGEVVEVGSDV   82 (357)
T ss_pred             ceEEEEEEecCCCC--ceEE-eecCCCCCCCcEEEEEEEeccChHHHHhhcCCcCc--CCCCccCCceeeEEEEEECCCc
Confidence            34799999988865  7777 89999999999999999999999999999887532  3468899999999999999999


Q ss_pred             CCCCCCCEEEecc-----ccc--c-------------------cCCCCCCCcceeEEEecCCceeeCCCCCCHHhHhccc
Q 016265          162 KEFKEGDEVYGDI-----NEK--A-------------------LEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLP  215 (392)
Q Consensus       162 ~~~~vGdrV~~~~-----~~~--~-------------------~~~~~~~G~~a~~~~v~~~~~~~iP~~l~~~~aa~l~  215 (392)
                      ++|++||+|+...     ..+  +                   ..|...+|+|+||+.++...++++|+++++++++.++
T Consensus        83 ~~~~~Gd~V~~~~~~~~c~~C~~c~~g~~~~c~~~~~~~~~~~~~g~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~  162 (357)
T PLN02514         83 SKFTVGDIVGVGVIVGCCGECSPCKSDLEQYCNKRIWSYNDVYTDGKPTQGGFASAMVVDQKFVVKIPEGMAPEQAAPLL  162 (357)
T ss_pred             ccccCCCEEEEcCccccCCCChhHhCCCcccCCCccccccccccCCccCCCccccEEEEchHHeEECCCCCCHHHhhhhh
Confidence            9999999997421     100  0                   0011236999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHhcC-CCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHH-HhcCCcEEEeCCCC-cccc
Q 016265          216 LAIETAYEGLERTG-FSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFL-KSLGADLAIDYTKD-NFED  292 (392)
Q Consensus       216 ~~~~ta~~al~~~~-~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~-~~~G~~~vi~~~~~-~~~~  292 (392)
                      +++.|||+++.... .++|++|+|+| +|++|++++|+||. .|+++++++.++++++.+ +++|+++++++.+. .+.+
T Consensus       163 ~~~~ta~~al~~~~~~~~g~~vlV~G-~G~vG~~av~~Ak~-~G~~vi~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~  240 (357)
T PLN02514        163 CAGVTVYSPLSHFGLKQSGLRGGILG-LGGVGHMGVKIAKA-MGHHVTVISSSDKKREEALEHLGADDYLVSSDAAEMQE  240 (357)
T ss_pred             hhHHHHHHHHHHcccCCCCCeEEEEc-ccHHHHHHHHHHHH-CCCeEEEEeCCHHHHHHHHHhcCCcEEecCCChHHHHH
Confidence            99999999996544 57999999996 89999999999999 499988888877776554 67999988876443 2233


Q ss_pred             CCCCccEEEecCc---cHHHHHHhcccCCeEEEEcCCCCCCce----------EE--EEeecHHHHHHHHHHHHCCCccc
Q 016265          293 LPEKFDVVYDAIG---QCDRAVKAIKEGGTVVALTGAVTPPGF----------RF--VVTSNGEVLKKLNPYLESGKVKP  357 (392)
Q Consensus       293 ~~~~~D~vid~~G---~~~~~~~~l~~~G~iv~~g~~~~~~~~----------~~--~~~~~~~~~~~~~~~l~~g~l~~  357 (392)
                      ...++|++|||+|   .++.++++++++|+++.+|....+..+          .+  ........+.++++++++|++++
T Consensus       241 ~~~~~D~vid~~g~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~g~l~~  320 (357)
T PLN02514        241 AADSLDYIIDTVPVFHPLEPYLSLLKLDGKLILMGVINTPLQFVTPMLMLGRKVITGSFIGSMKETEEMLEFCKEKGLTS  320 (357)
T ss_pred             hcCCCcEEEECCCchHHHHHHHHHhccCCEEEEECCCCCCCcccHHHHhhCCcEEEEEecCCHHHHHHHHHHHHhCCCcC
Confidence            3457999999998   368899999999999999865422111          11  11123457899999999999875


Q ss_pred             ccCCCcccchhhHHHHHHHHHhCCCCeeEEEEeC
Q 016265          358 IIDPKGPFPFSQVVEAFSYIETNKATGKVVIHPI  391 (392)
Q Consensus       358 ~~~~t~~~~l~~~~~A~~~l~~~~~~gKvvl~~~  391 (392)
                      .  + ++|+|+|+.+||+.+++++..||+|+.+.
T Consensus       321 ~--i-~~~~l~~~~~A~~~~~~~~~~gk~v~~~~  351 (357)
T PLN02514        321 M--I-EVVKMDYVNTAFERLEKNDVRYRFVVDVA  351 (357)
T ss_pred             c--E-EEEcHHHHHHHHHHHHcCCCceeEEEEcc
Confidence            4  2 57999999999999999998899999864

>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase

Probab=100.00  E-value=1.4e-40  Score=321.71  Aligned_cols=293  Identities=19%  Similarity=0.194  Sum_probs=222.3

Q ss_pred             eeEEEEcccCCcceEEEeccccCCCCCCCeEEEEEeEEecChHhHHhhcCCCCCC--CCCCCCcCCCceeEEEEEeCCCC
Q 016265           84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKAT--DSPLPTVPGYDVAGVVVKVGTQV  161 (392)
Q Consensus        84 mka~v~~~~~~~~~l~~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~--~~~~p~v~G~e~~G~V~~vG~~v  161 (392)
                      .|+++++.+++   ++++ +.+.|+ ++|||+|||.++|||++|++.++|.+...  ...+|.++|||++|+|+++|.+ 
T Consensus         3 ~~~~~~~~~~~---~~~~-~~~~P~-~~~eVlVkv~a~gIc~sD~~~~~G~~~~~~~~~~~P~i~GhE~~G~V~~~g~~-   76 (341)
T cd08237           3 NQVYRLVRPKF---FEVT-YEEENL-REDWVIVRPTYLSICHADQRYYQGNRSPEALKKKLPMALIHEGIGVVVSDPTG-   76 (341)
T ss_pred             ccceEEeccce---EEEe-ecCCCC-CCCeEEEEEEEEEEcCccHHHHcCCCCcccccCCCCeeccceeEEEEEeeCCC-
Confidence            36788877765   7888 889995 99999999999999999999999875321  1357999999999999998864 


Q ss_pred             CCCCCCCEEEecccccc---------------cCCCCCCCcceeEEEecCCceeeCCCCCCHHhHhccchhHHHHHHHHH
Q 016265          162 KEFKEGDEVYGDINEKA---------------LEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLE  226 (392)
Q Consensus       162 ~~~~vGdrV~~~~~~~~---------------~~~~~~~G~~a~~~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~al~  226 (392)
                       +|++||||+......+               ..+...+|+|+||+++++++++++|+++++++|+. ..++.++|+++.
T Consensus        77 -~~~vGdrV~~~~~~~~~~~~~~~~~~c~~~~~~g~~~~G~~aey~~v~~~~~~~vP~~l~~~~aa~-~~~~~~a~~a~~  154 (341)
T cd08237          77 -TYKVGTKVVMVPNTPVEKDEIIPENYLPSSRFRSSGYDGFMQDYVFLPPDRLVKLPDNVDPEVAAF-TELVSVGVHAIS  154 (341)
T ss_pred             -ccCCCCEEEECCCCCchhcccchhccCCCcceeEecCCCceEEEEEEchHHeEECCCCCChHHhhh-hchHHHHHHHHH
Confidence             7999999987532110               01223469999999999999999999999988774 457778999985


Q ss_pred             h---cCCCCCCeEEEEcCCCcHHHHHHHHHHHhcC-CeEEEEeCCcccHHHHHhcCCcEEEeCCCCccccCCCCccEEEe
Q 016265          227 R---TGFSAGKSILVLNGSGGVGSLVIQLAKQVFG-ASRVAATSSTRNLEFLKSLGADLAIDYTKDNFEDLPEKFDVVYD  302 (392)
Q Consensus       227 ~---~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G-~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~~~~~~~D~vid  302 (392)
                      .   +.+++|++|+|+| +|++|++++|+|+.+.| +++++++.+++|+++++++++++.++.    +.+ ..++|+|||
T Consensus       155 ~~~~~~~~~g~~VlV~G-~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~~~~~~~~~~----~~~-~~g~d~viD  228 (341)
T cd08237         155 RFEQIAHKDRNVIGVWG-DGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSFADETYLIDD----IPE-DLAVDHAFE  228 (341)
T ss_pred             HHhhcCCCCCCEEEEEC-CCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhhcCceeehhh----hhh-ccCCcEEEE
Confidence            3   4578999999998 79999999999986334 578888889999999988776654421    111 126999999


Q ss_pred             cCcc------HHHHHHhcccCCeEEEEcCCCCCCc----------eEE--EEeecHHHHHHHHHHHHCC---CcccccCC
Q 016265          303 AIGQ------CDRAVKAIKEGGTVVALTGAVTPPG----------FRF--VVTSNGEVLKKLNPYLESG---KVKPIIDP  361 (392)
Q Consensus       303 ~~G~------~~~~~~~l~~~G~iv~~g~~~~~~~----------~~~--~~~~~~~~~~~~~~~l~~g---~l~~~~~~  361 (392)
                      ++|.      ++.++++++++|+++.+|....+..          +.+  ........++++++++.+|   +.+....+
T Consensus       229 ~~G~~~~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~k~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i  308 (341)
T cd08237         229 CVGGRGSQSAINQIIDYIRPQGTIGLMGVSEYPVPINTRMVLEKGLTLVGSSRSTREDFERAVELLSRNPEVAEYLRKLV  308 (341)
T ss_pred             CCCCCccHHHHHHHHHhCcCCcEEEEEeecCCCcccCHHHHhhCceEEEEecccCHHHHHHHHHHHHhCCcccCChHHHh
Confidence            9982      6889999999999999986432211          111  1112346789999999999   22344456


Q ss_pred             Ccccchh---hHHHHHHHHHhCCCCeeEEEEeC
Q 016265          362 KGPFPFS---QVVEAFSYIETNKATGKVVIHPI  391 (392)
Q Consensus       362 t~~~~l~---~~~~A~~~l~~~~~~gKvvl~~~  391 (392)
                      +++|+++   |+.+||+.+.++ ..||+||++.
T Consensus       309 ~~~~~l~~l~~~~~a~~~~~~~-~~gKvvi~~~  340 (341)
T cd08237         309 GGVFPVRSINDIHRAFESDLTN-SWGKTVMEWE  340 (341)
T ss_pred             ccccccccHHHHHHHHHHHhhc-CcceEEEEee
Confidence            7889974   666666666554 5699999874

NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (

>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase

Probab=100.00  E-value=4.4e-40  Score=319.39  Aligned_cols=296  Identities=21%  Similarity=0.357  Sum_probs=238.3

Q ss_pred             EEEcccCCcceEEEeccccCCCCCCCeEEEEEeEEecChHhHHhhcCCCCCCCCCCCCcCCCceeEEEEEeCCCCCCCCC
Q 016265           87 WLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKEFKE  166 (392)
Q Consensus        87 ~v~~~~~~~~~l~~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~~~p~v~G~e~~G~V~~vG~~v~~~~v  166 (392)
                      +++++++..  ++++ +.|.|.++++||+||+.++|+|++|++.+.+... ....+|.++|||++|+|+++|++++.+ +
T Consensus         2 ~~~~~~g~~--~~~~-~~p~P~~~~~evlVrv~~~gic~sD~~~~~~~~~-~~~~~p~i~GhE~~G~V~~vG~~v~~~-~   76 (349)
T TIGR03201         2 WMMTEPGKP--MVKT-RVEIPELGAGDVVVKVAGCGVCHTDLSYYYMGVR-TNHALPLALGHEISGRVIQAGAGAASW-I   76 (349)
T ss_pred             ceEecCCCC--ceEE-eccCCCCCCCeEEEEEEEEeecccchHHHcCCCC-ccCCCCeeccccceEEEEEeCCCcCCC-C
Confidence            455666653  6777 8999999999999999999999999998744322 123468899999999999999999887 9


Q ss_pred             CCEEEecccccc------------------cCCCCCCCcceeEEEecCCceeeCCC------CCCHHhHhccchhHHHHH
Q 016265          167 GDEVYGDINEKA------------------LEGPKQFGSLAEYTAVEERLLAPKPK------NLDFVQAAGLPLAIETAY  222 (392)
Q Consensus       167 GdrV~~~~~~~~------------------~~~~~~~G~~a~~~~v~~~~~~~iP~------~l~~~~aa~l~~~~~ta~  222 (392)
                      ||||+......+                  ..|...+|+|+||+.++.+.++++|+      ++++++++.+++++.|+|
T Consensus        77 GdrV~~~~~~~cg~c~~c~~g~~~~c~~~~~~g~~~~G~~ae~~~v~~~~~~~ip~~~~~~~~~~~~~~a~~~~~~~ta~  156 (349)
T TIGR03201        77 GKAVIVPAVIPCGECELCKTGRGTICRAQKMPGNDMQGGFASHIVVPAKGLCVVDEARLAAAGLPLEHVSVVADAVTTPY  156 (349)
T ss_pred             CCEEEECCCCCCCCChhhhCcCcccCCCCCccCcCCCCcccceEEechHHeEECCcccccccCCCHHHhhhhcchHHHHH
Confidence            999986321100                  11222469999999999999999999      899999999999999999


Q ss_pred             HHHHhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCCc---ccc----C--
Q 016265          223 EGLERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDN---FED----L--  293 (392)
Q Consensus       223 ~al~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~---~~~----~--  293 (392)
                      +++.+..+++|++|+|+|+ |++|++++|+|+. .|+++++++++++|+++++++|+++++++.+.+   +.+    .  
T Consensus       157 ~a~~~~~~~~g~~VlV~G~-G~vG~~a~~~a~~-~G~~vi~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~t~  234 (349)
T TIGR03201       157 QAAVQAGLKKGDLVIVIGA-GGVGGYMVQTAKA-MGAAVVAIDIDPEKLEMMKGFGADLTLNPKDKSAREVKKLIKAFAK  234 (349)
T ss_pred             HHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHH-cCCeEEEEcCCHHHHHHHHHhCCceEecCccccHHHHHHHHHhhcc
Confidence            9998888999999999996 9999999999999 499988888999999999999999999876542   211    1  


Q ss_pred             CCCcc----EEEecCcc---HHHHHHhcccCCeEEEEcCCCCCCce----------EEE--EeecHHHHHHHHHHHHCCC
Q 016265          294 PEKFD----VVYDAIGQ---CDRAVKAIKEGGTVVALTGAVTPPGF----------RFV--VTSNGEVLKKLNPYLESGK  354 (392)
Q Consensus       294 ~~~~D----~vid~~G~---~~~~~~~l~~~G~iv~~g~~~~~~~~----------~~~--~~~~~~~~~~~~~~l~~g~  354 (392)
                      ..++|    ++|||+|.   ++.++++++++|+++.+|.......+          ...  .......++++++++++|+
T Consensus       235 ~~g~d~~~d~v~d~~g~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i~~g~  314 (349)
T TIGR03201       235 ARGLRSTGWKIFECSGSKPGQESALSLLSHGGTLVVVGYTMAKTEYRLSNLMAFHARALGNWGCPPDRYPAALDLVLDGK  314 (349)
T ss_pred             cCCCCCCcCEEEECCCChHHHHHHHHHHhcCCeEEEECcCCCCcccCHHHHhhcccEEEEEecCCHHHHHHHHHHHHcCC
Confidence            23665    89999994   46789999999999999875422111          111  1123567899999999999


Q ss_pred             cccccCCCcccchhhHHHHHHHHHhCCCCeeEEEEe
Q 016265          355 VKPIIDPKGPFPFSQVVEAFSYIETNKATGKVVIHP  390 (392)
Q Consensus       355 l~~~~~~t~~~~l~~~~~A~~~l~~~~~~gKvvl~~  390 (392)
                      +++...+ +.|+|+|+++||+.+.+++..||+++++
T Consensus       315 i~~~~~i-~~~~l~~~~~A~~~~~~~~~~~k~~~~~  349 (349)
T TIGR03201       315 IQLGPFV-ERRPLDQIEHVFAAAHHHKLKRRAILTP  349 (349)
T ss_pred             CCcccce-EEecHHHHHHHHHHHHcCCccceEEecC
Confidence            9875444 4799999999999999999889999864

Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.

>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase

Probab=100.00  E-value=6e-40  Score=324.95  Aligned_cols=302  Identities=22%  Similarity=0.304  Sum_probs=234.5

Q ss_pred             ceeEEEEcccCCcceEEEeccccCCCCCCCeEEEEEeEEecChHhHHhh-cCCCCC----CCCCCCCcCCCceeEEEEEe
Q 016265           83 EMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRR-QGKFKA----TDSPLPTVPGYDVAGVVVKV  157 (392)
Q Consensus        83 ~mka~v~~~~~~~~~l~~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~-~g~~~~----~~~~~p~v~G~e~~G~V~~v  157 (392)
                      +||++++.+++.   ++++ ++|.|+|+++||+|||.++|||++|++.+ .|....    ....+|.++|||++|+|+++
T Consensus         2 ~~~a~~~~~~~~---l~~~-e~p~P~~~~~eVlVkV~a~gic~sD~~~~~~g~~~~~~~~~~~~~p~i~GhE~~G~V~~v   77 (410)
T cd08238           2 KTKAWRMYGKGD---LRLE-KFELPEIADDEILVRVISDSLCFSTWKLALQGSDHKKVPNDLAKEPVILGHEFAGTILKV   77 (410)
T ss_pred             CcEEEEEEcCCc---eEEE-ecCCCCCCCCeEEEEEEEeccCCCCHHHHhcCCccccCcccccCCCceeccccEEEEEEe
Confidence            589999987764   7888 89999999999999999999999999976 454211    11246889999999999999


Q ss_pred             CCCCC-CCCCCCEEEeccccccc-------CCCCCCCcceeEEEecCC----ceeeCCCCCCHHhHhcc-chhH-HHHHH
Q 016265          158 GTQVK-EFKEGDEVYGDINEKAL-------EGPKQFGSLAEYTAVEER----LLAPKPKNLDFVQAAGL-PLAI-ETAYE  223 (392)
Q Consensus       158 G~~v~-~~~vGdrV~~~~~~~~~-------~~~~~~G~~a~~~~v~~~----~~~~iP~~l~~~~aa~l-~~~~-~ta~~  223 (392)
                      |++|+ +|++||||++.....+.       .+...+|+|+||++++.+    .++++|+++++++++.+ ++++ .++++
T Consensus        78 G~~v~~~~~vGdrV~~~~~~~c~~~~~c~~~g~~~~G~~aey~~v~~~~~~~~~~~lP~~l~~~~aal~epl~~~~~~~~  157 (410)
T cd08238          78 GKKWQGKYKPGQRFVIQPALILPDGPSCPGYSYTYPGGLATYHIIPNEVMEQDCLLIYEGDGYAEASLVEPLSCVIGAYT  157 (410)
T ss_pred             CCCccCCCCCCCEEEEcCCcCCCCCCCCCCccccCCCcceEEEEecHHhccCCeEECCCCCCHHHHhhcchHHHHHHHhh
Confidence            99998 69999999875321110       122346999999999987    68999999999998865 4332 23443


Q ss_pred             HH---------HhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCC---eEEEEeCCcccHHHHHhc--------CCc-EE
Q 016265          224 GL---------ERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGA---SRVAATSSTRNLEFLKSL--------GAD-LA  282 (392)
Q Consensus       224 al---------~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~---~vv~~~~~~~~~~~~~~~--------G~~-~v  282 (392)
                      ++         +++++++|++|+|+|++|++|++++|+||.+ |+   ++++++.+++|++.++++        |++ .+
T Consensus       158 a~~~~~~~~~~~~~~~~~g~~VlV~G~~G~vG~~aiq~ak~~-G~g~~~Vi~~~~~~~r~~~a~~~~~~~~~~~Ga~~~~  236 (410)
T cd08238         158 ANYHLQPGEYRHRMGIKPGGNTAILGGAGPMGLMAIDYAIHG-PIGPSLLVVTDVNDERLARAQRLFPPEAASRGIELLY  236 (410)
T ss_pred             hcccccccchhhhcCCCCCCEEEEEeCCCHHHHHHHHHHHhc-ccCCceEEEEcCCHHHHHHHHHhccccccccCceEEE
Confidence            32         3567899999999998999999999999985 54   688889999999999997        776 56


Q ss_pred             EeCCC-Ccccc----C--CCCccEEEecCc---cHHHHHHhcccCCeEEEEcCCC-C--CCceE----------EE--Ee
Q 016265          283 IDYTK-DNFED----L--PEKFDVVYDAIG---QCDRAVKAIKEGGTVVALTGAV-T--PPGFR----------FV--VT  337 (392)
Q Consensus       283 i~~~~-~~~~~----~--~~~~D~vid~~G---~~~~~~~~l~~~G~iv~~g~~~-~--~~~~~----------~~--~~  337 (392)
                      +++.+ .++.+    .  ..++|++||++|   .+..++++++++|+++.+++.. .  ...++          +.  ..
T Consensus       237 i~~~~~~~~~~~v~~~t~g~g~D~vid~~g~~~~~~~a~~~l~~~G~~v~~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~  316 (410)
T cd08238         237 VNPATIDDLHATLMELTGGQGFDDVFVFVPVPELVEEADTLLAPDGCLNFFAGPVDKNFSAPLNFYNVHYNNTHYVGTSG  316 (410)
T ss_pred             ECCCccccHHHHHHHHhCCCCCCEEEEcCCCHHHHHHHHHHhccCCeEEEEEccCCCCccccccHHHhhhcCcEEEEeCC
Confidence            77654 33322    1  347999999997   3688999999999988775421 1  11111          11  11


Q ss_pred             ecHHHHHHHHHHHHCCCcccccCCCcccchhhHHHHHHHHHhCCCCeeEEEEe
Q 016265          338 SNGEVLKKLNPYLESGKVKPIIDPKGPFPFSQVVEAFSYIETNKATGKVVIHP  390 (392)
Q Consensus       338 ~~~~~~~~~~~~l~~g~l~~~~~~t~~~~l~~~~~A~~~l~~~~~~gKvvl~~  390 (392)
                      .....++++++++++|++++...++++|+|+|+++||+.+. ++..||+|+.+
T Consensus       317 ~~~~~~~~~~~li~~g~i~~~~~it~~~~l~~~~~A~~~~~-~~~~gKvvl~~  368 (410)
T cd08238         317 GNTDDMKEAIDLMAAGKLNPARMVTHIGGLNAAAETTLNLP-GIPGGKKLIYT  368 (410)
T ss_pred             CCHHHHHHHHHHHHcCCCchhhcEEEEecHHHHHHHHHHhh-ccCCceEEEEC
Confidence            24567899999999999998777889999999999999999 67779999986

L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found

>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase

Probab=100.00  E-value=1.1e-39  Score=318.35  Aligned_cols=298  Identities=22%  Similarity=0.261  Sum_probs=242.0

Q ss_pred             ceeEEEEcccCCcceEEEeccccCCCCCCCeEEEEEeEEecChHhHHhhcCCCCCCCCCCCCcCCCceeEEEEEeCCCCC
Q 016265           83 EMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVK  162 (392)
Q Consensus        83 ~mka~v~~~~~~~~~l~~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~~~p~v~G~e~~G~V~~vG~~v~  162 (392)
                      .|||+++.+.++.  ++++ ++|.|.++++||+||+.++|+|++|++.+.|.++   ..+|.++|||++|+|+++|++|+
T Consensus         2 ~~ka~~~~~~~~~--~~~~-~~~~p~~~~~evlVkv~~~gi~~sD~~~~~g~~~---~~~p~i~G~e~~G~V~~vG~~v~   75 (365)
T cd08277           2 KCKAAVAWEAGKP--LVIE-EIEVAPPKANEVRIKMLATSVCHTDILAIEGFKA---TLFPVILGHEGAGIVESVGEGVT   75 (365)
T ss_pred             ccEEEEEccCCCC--cEEE-EEECCCCCCCEEEEEEEEEeechhhHHHhcCCCC---CCCCeecccceeEEEEeeCCCCc
Confidence            4899999876654  6777 8999999999999999999999999999988754   35688999999999999999999


Q ss_pred             CCCCCCEEEeccccc------ccCC--------------------------------CCCCCcceeEEEecCCceeeCCC
Q 016265          163 EFKEGDEVYGDINEK------ALEG--------------------------------PKQFGSLAEYTAVEERLLAPKPK  204 (392)
Q Consensus       163 ~~~vGdrV~~~~~~~------~~~~--------------------------------~~~~G~~a~~~~v~~~~~~~iP~  204 (392)
                      ++++||||++.....      +..+                                ....|+|+||+.++.+.++++|+
T Consensus        76 ~~~~GdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~ae~~~v~~~~~~~lP~  155 (365)
T cd08277          76 NLKPGDKVIPLFIGQCGECSNCRSGKTNLCQKYRANESGLMPDGTSRFTCKGKKIYHFLGTSTFSQYTVVDENYVAKIDP  155 (365)
T ss_pred             cCCCCCEEEECCCCCCCCCchhcCcCcccCcCccccccccccCCccccccCCcccccccccccceeeEEEchhheEECCC
Confidence            999999998753110      0000                                00148999999999999999999


Q ss_pred             CCCHHhHhccchhHHHHHHHH-HhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCC-eEEEEeCCcccHHHHHhcCCcEE
Q 016265          205 NLDFVQAAGLPLAIETAYEGL-ERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGA-SRVAATSSTRNLEFLKSLGADLA  282 (392)
Q Consensus       205 ~l~~~~aa~l~~~~~ta~~al-~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~-~vv~~~~~~~~~~~~~~~G~~~v  282 (392)
                      ++++++++.+++++.|||+++ +.+++++|++|+|+| +|++|++++|+||. .|+ ++++++++++|++.++++|++++
T Consensus       156 ~l~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G-~g~vG~~~~~~a~~-~G~~~Vi~~~~~~~~~~~~~~~ga~~~  233 (365)
T cd08277         156 AAPLEHVCLLGCGFSTGYGAAWNTAKVEPGSTVAVFG-LGAVGLSAIMGAKI-AGASRIIGVDINEDKFEKAKEFGATDF  233 (365)
T ss_pred             CCCHHHhhHhcchhHHHHHHHHhhcCCCCCCEEEEEC-CCHHHHHHHHHHHH-cCCCeEEEEeCCHHHHHHHHHcCCCcE
Confidence            999999999999999999987 568899999999997 79999999999999 498 67788889999999999999999


Q ss_pred             EeCCCCc--cc----c-CCCCccEEEecCcc---HHHHHHhcccC-CeEEEEcCCCC-CC---------ceEEE--E-e-
Q 016265          283 IDYTKDN--FE----D-LPEKFDVVYDAIGQ---CDRAVKAIKEG-GTVVALTGAVT-PP---------GFRFV--V-T-  337 (392)
Q Consensus       283 i~~~~~~--~~----~-~~~~~D~vid~~G~---~~~~~~~l~~~-G~iv~~g~~~~-~~---------~~~~~--~-~-  337 (392)
                      +++.+.+  +.    + ..+++|++|||+|.   +..++++++++ |+++.+|.... ..         ...+.  . . 
T Consensus       234 i~~~~~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~g~~~~~  313 (365)
T cd08277         234 INPKDSDKPVSEVIREMTGGGVDYSFECTGNADLMNEALESTKLGWGVSVVVGVPPGAELSIRPFQLILGRTWKGSFFGG  313 (365)
T ss_pred             eccccccchHHHHHHHHhCCCCCEEEECCCChHHHHHHHHhcccCCCEEEEEcCCCccccccCHhHHhhCCEEEeeecCC
Confidence            9876532  11    1 13579999999983   57899999885 99999986431 10         11111  1 1 


Q ss_pred             -ecHHHHHHHHHHHHCCCcccccCCCcccchhhHHHHHHHHHhCCCCeeEEEE
Q 016265          338 -SNGEVLKKLNPYLESGKVKPIIDPKGPFPFSQVVEAFSYIETNKATGKVVIH  389 (392)
Q Consensus       338 -~~~~~~~~~~~~l~~g~l~~~~~~t~~~~l~~~~~A~~~l~~~~~~gKvvl~  389 (392)
                       .....+.+++++++++.++....+++.|+|+|+++||+.+++++. .|+++.
T Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~A~~~~~~~~~-~k~~i~  365 (365)
T cd08277         314 FKSRSDVPKLVSKYMNKKFDLDELITHVLPFEEINKGFDLMKSGEC-IRTVIT  365 (365)
T ss_pred             CChHHHHHHHHHHHHCCCcChhHheeeEEchhhHHHHHHHHHCCCC-ceEeeC
Confidence             113468899999999988876667899999999999999998874 688863

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i

>cd08230 glucose_DH Glucose dehydrogenase

Probab=100.00  E-value=6e-40  Score=319.13  Aligned_cols=296  Identities=21%  Similarity=0.233  Sum_probs=224.8

Q ss_pred             eeEEEEcccCCcceEEEeccccCCCCCCCeEEEEEeEEecChHhHHhhcCCCCCCC-CCCCCcCCCceeEEEEEeCCCCC
Q 016265           84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATD-SPLPTVPGYDVAGVVVKVGTQVK  162 (392)
Q Consensus        84 mka~v~~~~~~~~~l~~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~-~~~p~v~G~e~~G~V~~vG~~v~  162 (392)
                      |||++++..+ .+ ++++ ++|.|+|+++||||||.++|||++|++.+.|.++..+ ..+|.++|||++|+|+++|++ +
T Consensus         1 mka~~~~~~~-~~-l~~~-~~p~p~~~~~evlVkv~a~gi~~~D~~~~~g~~~~~~~~~~p~i~G~e~~G~V~~vG~~-~   76 (355)
T cd08230           1 MKAIAVKPGK-PG-VRVV-DIPEPEPTPGEVLVRTLEVGVCGTDREIVAGEYGTAPPGEDFLVLGHEALGVVEEVGDG-S   76 (355)
T ss_pred             CceeEecCCC-CC-CeEE-eCCCCCCCCCeEEEEEEEEEeccccHHHHcCCCCCCCCCCCCeeeccccceEEEEecCC-C
Confidence            6899997533 33 7888 8999999999999999999999999999998753221 246789999999999999999 9


Q ss_pred             CCCCCCEEEeccccc------ccC--------------CC-CCCCcceeEEEecCCceeeCCCCCCHHhHhccchhHHHH
Q 016265          163 EFKEGDEVYGDINEK------ALE--------------GP-KQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETA  221 (392)
Q Consensus       163 ~~~vGdrV~~~~~~~------~~~--------------~~-~~~G~~a~~~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta  221 (392)
                      +|++||||+......      +..              |. ..+|+|+||+.++.+.++++|++++ + ++++..++.++
T Consensus        77 ~~~vGdrV~~~~~~~cg~C~~c~~g~~~~c~~~~~~~~g~~~~~G~~aey~~~~~~~~~~~P~~~~-~-~a~~~~p~~~~  154 (355)
T cd08230          77 GLSPGDLVVPTVRRPPGKCLNCRIGRPDFCETGEYTERGIKGLHGFMREYFVDDPEYLVKVPPSLA-D-VGVLLEPLSVV  154 (355)
T ss_pred             CCCCCCEEEeccccCCCcChhhhCcCcccCCCcceeccCcCCCCccceeEEEeccccEEECCCCCC-c-ceeecchHHHH
Confidence            999999998653210      000              11 1369999999999999999999999 3 34444454445


Q ss_pred             HHHHH-------hcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeC---CcccHHHHHhcCCcEEEeCCCCccc
Q 016265          222 YEGLE-------RTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATS---STRNLEFLKSLGADLAIDYTKDNFE  291 (392)
Q Consensus       222 ~~al~-------~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~---~~~~~~~~~~~G~~~vi~~~~~~~~  291 (392)
                      ++++.       ....++|++|+|+| +|++|++++|+||++ |++++++++   +++|+++++++|++. +++.++++.
T Consensus       155 ~~a~~~~~~~~~~~~~~~g~~vlI~G-~G~vG~~a~q~ak~~-G~~vi~~~~~~~~~~~~~~~~~~Ga~~-v~~~~~~~~  231 (355)
T cd08230         155 EKAIEQAEAVQKRLPTWNPRRALVLG-AGPIGLLAALLLRLR-GFEVYVLNRRDPPDPKADIVEELGATY-VNSSKTPVA  231 (355)
T ss_pred             HHHHHHHhhhhhhcccCCCCEEEEEC-CCHHHHHHHHHHHHc-CCeEEEEecCCCCHHHHHHHHHcCCEE-ecCCccchh
Confidence            54442       22367899999998 799999999999995 998888887   678999999999987 566554432


Q ss_pred             c--CCCCccEEEecCcc---HHHHHHhcccCCeEEEEcCCCC--CCceE-------E-------E--EeecHHHHHHHHH
Q 016265          292 D--LPEKFDVVYDAIGQ---CDRAVKAIKEGGTVVALTGAVT--PPGFR-------F-------V--VTSNGEVLKKLNP  348 (392)
Q Consensus       292 ~--~~~~~D~vid~~G~---~~~~~~~l~~~G~iv~~g~~~~--~~~~~-------~-------~--~~~~~~~~~~~~~  348 (392)
                      +  ...++|+||||+|.   ++.++++++++|+++.+|....  ...+.       +       .  ......+++++++
T Consensus       232 ~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~G~~~~~~~~~~~~~~~~~~~~~k~~~i~g~~~~~~~~~~~~~~  311 (355)
T cd08230         232 EVKLVGEFDLIIEATGVPPLAFEALPALAPNGVVILFGVPGGGREFEVDGGELNRDLVLGNKALVGSVNANKRHFEQAVE  311 (355)
T ss_pred             hhhhcCCCCEEEECcCCHHHHHHHHHHccCCcEEEEEecCCCCCccccChhhhhhhHhhcCcEEEEecCCchhhHHHHHH
Confidence            2  23579999999994   5889999999999999986442  11111       0       0  1112456888999


Q ss_pred             HHHCCCcc----cccCCCcccchhhHHHHHHHHHhCCCCeeEEEEe
Q 016265          349 YLESGKVK----PIIDPKGPFPFSQVVEAFSYIETNKATGKVVIHP  390 (392)
Q Consensus       349 ~l~~g~l~----~~~~~t~~~~l~~~~~A~~~l~~~~~~gKvvl~~  390 (392)
                      ++.++++.    ....++++|+++|+.+||+.++++.  +|+||++
T Consensus       312 ~l~~~~~~~~~~~~~~i~~~~~l~~~~~a~~~~~~~~--~K~v~~~  355 (355)
T cd08230         312 DLAQWKYRWPGVLERLITRRVPLEEFAEALTEKPDGE--IKVVIEW  355 (355)
T ss_pred             HHHhcccccccchHHheeeeecHHHHHHHHHhcccCC--eEEEeeC
Confidence            99987732    2234678999999999999887654  5999875

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase

Probab=100.00  E-value=3.4e-39  Score=313.32  Aligned_cols=298  Identities=28%  Similarity=0.375  Sum_probs=241.0

Q ss_pred             eeEEEEcccCCcceEEEeccccCCCCCCCeEEEEEeEEecChHhHHhhcCC-C--CC------CCCCCCCcCCCceeEEE
Q 016265           84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGK-F--KA------TDSPLPTVPGYDVAGVV  154 (392)
Q Consensus        84 mka~v~~~~~~~~~l~~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~g~-~--~~------~~~~~p~v~G~e~~G~V  154 (392)
                      |||+++.+++.   ++++ +++.|+|+++||+||+.++++|++|++.+.+. +  +.      ....+|.++|||++|+|
T Consensus         1 mka~~~~~~~~---l~~~-~~~~p~~~~~evlV~v~a~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~p~i~G~e~~G~V   76 (351)
T cd08233           1 MKAARYHGRKD---IRVE-EVPEPPVKPGEVKIKVAWCGICGSDLHEYLDGPIFIPTEGHPHLTGETAPVTLGHEFSGVV   76 (351)
T ss_pred             CceEEEecCCc---eEEE-eccCCCCCCCeEEEEEEEEEECccchHhhcCCCccccccccccccccCCCceecccceEEE
Confidence            79999987664   7888 89999999999999999999999999876542 1  10      01236889999999999


Q ss_pred             EEeCCCCCCCCCCCEEEecccccc------c------------CCC-CCCCcceeEEEecCCceeeCCCCCCHHhHhccc
Q 016265          155 VKVGTQVKEFKEGDEVYGDINEKA------L------------EGP-KQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLP  215 (392)
Q Consensus       155 ~~vG~~v~~~~vGdrV~~~~~~~~------~------------~~~-~~~G~~a~~~~v~~~~~~~iP~~l~~~~aa~l~  215 (392)
                      +++|+++++|++||+|++.....+      .            .+. ..+|+|++|+.++...++++|+++++++++.+ 
T Consensus        77 ~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~lP~~~~~~~aa~~-  155 (351)
T cd08233          77 VEVGSGVTGFKVGDRVVVEPTIKCGTCGACKRGLYNLCDSLGFIGLGGGGGGFAEYVVVPAYHVHKLPDNVPLEEAALV-  155 (351)
T ss_pred             EEeCCCCCCCCCCCEEEECCCCCCCCChHHhCcCcccCCCCceeccCCCCCceeeEEEechHHeEECcCCCCHHHhhhc-
Confidence            999999999999999987432100      0            011 12699999999999999999999999998765 


Q ss_pred             hhHHHHHHHHHhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCC-eEEEEeCCcccHHHHHhcCCcEEEeCCCCcccc--
Q 016265          216 LAIETAYEGLERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGA-SRVAATSSTRNLEFLKSLGADLAIDYTKDNFED--  292 (392)
Q Consensus       216 ~~~~ta~~al~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~-~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~~--  292 (392)
                      .++.|||+++..+++++|++|+|+| +|++|++++|+|+.+ |+ ++++++++++++++++++|++.++++++.++.+  
T Consensus       156 ~~~~ta~~~l~~~~~~~g~~vlI~g-~g~vG~~a~q~a~~~-G~~~v~~~~~~~~~~~~~~~~ga~~~i~~~~~~~~~~l  233 (351)
T cd08233         156 EPLAVAWHAVRRSGFKPGDTALVLG-AGPIGLLTILALKAA-GASKIIVSEPSEARRELAEELGATIVLDPTEVDVVAEV  233 (351)
T ss_pred             cHHHHHHHHHHhcCCCCCCEEEEEC-CCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHHHhCCCEEECCCccCHHHHH
Confidence            5778999999888899999999998 799999999999994 99 677788899999999999999999987765432  


Q ss_pred             --C--CCCccEEEecCcc---HHHHHHhcccCCeEEEEcCCCCCCc----------eEE--EEeecHHHHHHHHHHHHCC
Q 016265          293 --L--PEKFDVVYDAIGQ---CDRAVKAIKEGGTVVALTGAVTPPG----------FRF--VVTSNGEVLKKLNPYLESG  353 (392)
Q Consensus       293 --~--~~~~D~vid~~G~---~~~~~~~l~~~G~iv~~g~~~~~~~----------~~~--~~~~~~~~~~~~~~~l~~g  353 (392)
                        .  .+++|++|||+|.   ++.++++++++|+++.+|....+..          ..+  ......+.++++++++++|
T Consensus       234 ~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~g  313 (351)
T cd08233         234 RKLTGGGGVDVSFDCAGVQATLDTAIDALRPRGTAVNVAIWEKPISFNPNDLVLKEKTLTGSICYTREDFEEVIDLLASG  313 (351)
T ss_pred             HHHhCCCCCCEEEECCCCHHHHHHHHHhccCCCEEEEEccCCCCCccCHHHHHhhCcEEEEEeccCcchHHHHHHHHHcC
Confidence              1  2469999999973   5889999999999999987542211          111  1122356789999999999


Q ss_pred             CcccccCCCcccchhhH-HHHHHHHHhCCCC-eeEEE
Q 016265          354 KVKPIIDPKGPFPFSQV-VEAFSYIETNKAT-GKVVI  388 (392)
Q Consensus       354 ~l~~~~~~t~~~~l~~~-~~A~~~l~~~~~~-gKvvl  388 (392)
                      ++++...++++|+++|+ ++||+.+.+++.. ||+||
T Consensus       314 ~l~~~~~i~~~~~l~e~~~~a~~~~~~~~~~~~k~v~  350 (351)
T cd08233         314 KIDAEPLITSRIPLEDIVEKGFEELINDKEQHVKILV  350 (351)
T ss_pred             CCChHHheEEEecHHHHHHHHHHHHHhCCCCceEEEe
Confidence            99765556789999996 7999999999875 99987

(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.

>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2

Probab=100.00  E-value=1.3e-38  Score=305.32  Aligned_cols=292  Identities=22%  Similarity=0.300  Sum_probs=246.3

Q ss_pred             eeEEEEcccCCc-ceEEEeccccCCCCCCCeEEEEEeEEecChHhHHhhcCCCCCCCCCCCCcCCCceeEEEEEeCCCCC
Q 016265           84 MKAWLYGEYGGV-DVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVK  162 (392)
Q Consensus        84 mka~v~~~~~~~-~~l~~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~~~p~v~G~e~~G~V~~vG~~v~  162 (392)
                      |||+++.+++.+ +.++++ +++.|.+.++||+||+.++++|+.|++.+.|.++. ...+|.++|||++|+|+++|++++
T Consensus         1 m~a~~~~~~~~~~~~~~~~-~~~~p~~~~~~v~i~v~~~~~~~~d~~~~~g~~~~-~~~~p~~~G~e~~G~V~~~G~~v~   78 (324)
T cd08292           1 MRAAVHTQFGDPADVLEIG-EVPKPTPGAGEVLVRTTLSPIHNHDLWTIRGTYGY-KPELPAIGGSEAVGVVDAVGEGVK   78 (324)
T ss_pred             CeeEEEccCCChhHeEEEe-ecCCCCCCCCeEEEEEEEccCCHHHHHHhcCcCCC-CCCCCCCCCcceEEEEEEeCCCCC
Confidence            799999887764 458888 89999999999999999999999999999887642 234578999999999999999999


Q ss_pred             CCCCCCEEEecccccccCCCCCCCcceeEEEecCCceeeCCCCCCHHhHhccchhHHHHHHHHHhcCCCCCCeEEEEcCC
Q 016265          163 EFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLERTGFSAGKSILVLNGS  242 (392)
Q Consensus       163 ~~~vGdrV~~~~~~~~~~~~~~~G~~a~~~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~al~~~~~~~g~~VlI~Ga~  242 (392)
                      ++++||+|++..         ..|+|++|+.++...++++|+++++++++.+++...|+|+++..+++++|++|+|+|++
T Consensus        79 ~~~~Gd~V~~~~---------~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~~~~~~~~~g~~vlI~g~~  149 (324)
T cd08292          79 GLQVGQRVAVAP---------VHGTWAEYFVAPADGLVPLPDGISDEVAAQLIAMPLSALMLLDFLGVKPGQWLIQNAAG  149 (324)
T ss_pred             CCCCCCEEEecc---------CCCcceeEEEEchHHeEECCCCCCHHHhhhccccHHHHHHHHHhhCCCCCCEEEEcccc
Confidence            999999999864         15899999999999999999999999999998888999999988899999999999989


Q ss_pred             CcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCCcccc----C--CCCccEEEecCc--cHHHHHHhc
Q 016265          243 GGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFED----L--PEKFDVVYDAIG--QCDRAVKAI  314 (392)
Q Consensus       243 G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~~----~--~~~~D~vid~~G--~~~~~~~~l  314 (392)
                      |.+|++++|+|+. .|++++++++++++.+.++++|+++++++.+.++.+    .  ++++|++|||+|  ....+++++
T Consensus       150 g~ig~~~~~~a~~-~G~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~l  228 (324)
T cd08292         150 GAVGKLVAMLAAA-RGINVINLVRRDAGVAELRALGIGPVVSTEQPGWQDKVREAAGGAPISVALDSVGGKLAGELLSLL  228 (324)
T ss_pred             cHHHHHHHHHHHH-CCCeEEEEecCHHHHHHHHhcCCCEEEcCCCchHHHHHHHHhCCCCCcEEEECCCChhHHHHHHhh
Confidence            9999999999999 599999999999999999889999999887655432    1  357999999998  357889999


Q ss_pred             ccCCeEEEEcCCCC---C--------CceEEEEee------------cHHHHHHHHHHHHCCCcccccCCCcccchhhHH
Q 016265          315 KEGGTVVALTGAVT---P--------PGFRFVVTS------------NGEVLKKLNPYLESGKVKPIIDPKGPFPFSQVV  371 (392)
Q Consensus       315 ~~~G~iv~~g~~~~---~--------~~~~~~~~~------------~~~~~~~~~~~l~~g~l~~~~~~t~~~~l~~~~  371 (392)
                      +++|+++.+|....   .        ....+....            ....+.++++++.+|.+++..  .+.|+++|+.
T Consensus       229 ~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~i~~~~--~~~~~~~~~~  306 (324)
T cd08292         229 GEGGTLVSFGSMSGEPMQISSGDLIFKQATVRGFWGGRWSQEMSVEYRKRMIAELLTLALKGQLLLPV--EAVFDLGDAA  306 (324)
T ss_pred             cCCcEEEEEecCCCCCCcCCHHHHhhCCCEEEEEEcHHhhhhcCHHHHHHHHHHHHHHHHCCCccCcc--ccEecHHHHH
Confidence            99999999975421   1        111111100            124578899999999998652  5789999999


Q ss_pred             HHHHHHHhCCCCeeEEEE
Q 016265          372 EAFSYIETNKATGKVVIH  389 (392)
Q Consensus       372 ~A~~~l~~~~~~gKvvl~  389 (392)
                      +||+.+.++...||++++
T Consensus       307 ~a~~~~~~~~~~~kvvv~  324 (324)
T cd08292         307 KAAAASMRPGRAGKVLLR  324 (324)
T ss_pred             HHHHHHHcCCCCceEEeC
Confidence            999999988888999874

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=100.00  E-value=5.5e-39  Score=310.64  Aligned_cols=298  Identities=31%  Similarity=0.407  Sum_probs=224.7

Q ss_pred             eeEEEEcccCCcceEEEeccccCCCCCCCeEEEEEeEEecChHhHHhhcCCCCCCCCCCCC-cCCCceeEEEEEeCCCCC
Q 016265           84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPT-VPGYDVAGVVVKVGTQVK  162 (392)
Q Consensus        84 mka~v~~~~~~~~~l~~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~~~p~-v~G~e~~G~V~~vG~~v~  162 (392)
                      |+++++..++..  .+++ +.+.|.+.++||+|||.++|||++|+|.++|..+..  ..|. ++|||++|+|+++| .++
T Consensus         1 m~a~~~~~~~~~--~~~~-~~~~p~~~p~~vlVkv~~~gICGSDlh~~~g~~~~~--~~~~~i~GHE~~G~V~evG-~~~   74 (350)
T COG1063           1 MKAAVVYVGGGD--VRLE-EPPPPIPGPGDVLIRVTATGICGSDLHIYRGGEPFV--PPGDIILGHEFVGEVVEVG-VVR   74 (350)
T ss_pred             CceeEEEecCCc--cccc-cCCCCCCCCCeEEEEEEEEeEchhhhhhccCCCCCC--CCCCcccCccceEEEEEec-ccc
Confidence            456666555542  2244 666677899999999999999999999999975432  2344 99999999999999 778


Q ss_pred             CCCCCCEEEeccccc------------c-c----------CCCCCCCcceeEEEecCCceee-CCCCCCHHhHhccchhH
Q 016265          163 EFKEGDEVYGDINEK------------A-L----------EGPKQFGSLAEYTAVEERLLAP-KPKNLDFVQAAGLPLAI  218 (392)
Q Consensus       163 ~~~vGdrV~~~~~~~------------~-~----------~~~~~~G~~a~~~~v~~~~~~~-iP~~l~~~~aa~l~~~~  218 (392)
                      .+++||||+..+...            + +          .+...+|+|+||+.+|.+++++ +|+++ ..+++++..++
T Consensus        75 ~~~~GdrVvv~~~~~Cg~C~~C~~G~~~~C~~~~~~g~~~~~~~~~G~~aEyv~vp~~~~~~~~pd~~-~~~~aal~epl  153 (350)
T COG1063          75 GFKVGDRVVVEPNIPCGHCRYCRAGEYNLCENPGFYGYAGLGGGIDGGFAEYVRVPADFNLAKLPDGI-DEEAAALTEPL  153 (350)
T ss_pred             CCCCCCEEEECCCcCCCCChhHhCcCcccCCCccccccccccCCCCCceEEEEEeccccCeecCCCCC-ChhhhhhcChh
Confidence            899999998753311            0 0          1112579999999999755554 58888 55666677777


Q ss_pred             HHHHHHH-HhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeE-EEEeCCcccHHHHHh-cCCcEEEeCCCCccc----
Q 016265          219 ETAYEGL-ERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASR-VAATSSTRNLEFLKS-LGADLAIDYTKDNFE----  291 (392)
Q Consensus       219 ~ta~~al-~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~v-v~~~~~~~~~~~~~~-~G~~~vi~~~~~~~~----  291 (392)
                      .++|++. .....+++++|+|+| +|++|++++++|+.. |+.. |+++.+++|++++++ .|++.+++...++..    
T Consensus       154 a~~~~~~a~~~~~~~~~~V~V~G-aGpIGLla~~~a~~~-Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~  231 (350)
T COG1063         154 ATAYHGHAERAAVRPGGTVVVVG-AGPIGLLAIALAKLL-GASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEIL  231 (350)
T ss_pred             hhhhhhhhhccCCCCCCEEEEEC-CCHHHHHHHHHHHHc-CCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHH
Confidence            7898774 455556666999998 999999999999985 8754 455789999999998 666666665543221    


Q ss_pred             cC--CCCccEEEecCcc---HHHHHHhcccCCeEEEEcCCCCCC-ce----------EEEE--e-ecHHHHHHHHHHHHC
Q 016265          292 DL--PEKFDVVYDAIGQ---CDRAVKAIKEGGTVVALTGAVTPP-GF----------RFVV--T-SNGEVLKKLNPYLES  352 (392)
Q Consensus       292 ~~--~~~~D~vid~~G~---~~~~~~~l~~~G~iv~~g~~~~~~-~~----------~~~~--~-~~~~~~~~~~~~l~~  352 (392)
                      +.  +.++|++|||+|.   +++++++++++|+++.+|...... .+          .+..  . .....++.+++++.+
T Consensus       232 ~~t~g~g~D~vie~~G~~~~~~~ai~~~r~gG~v~~vGv~~~~~~~~~~~~~~~kel~l~gs~~~~~~~~~~~~~~ll~~  311 (350)
T COG1063         232 ELTGGRGADVVIEAVGSPPALDQALEALRPGGTVVVVGVYGGEDIPLPAGLVVSKELTLRGSLRPSGREDFERALDLLAS  311 (350)
T ss_pred             HHhCCCCCCEEEECCCCHHHHHHHHHHhcCCCEEEEEeccCCccCccCHHHHHhcccEEEeccCCCCcccHHHHHHHHHc
Confidence            12  3479999999994   589999999999999998775332 11          1111  1 234578999999999


Q ss_pred             CCcccccCCCcccchhhHHHHHHHHHhCCC-CeeEEEEe
Q 016265          353 GKVKPIIDPKGPFPFSQVVEAFSYIETNKA-TGKVVIHP  390 (392)
Q Consensus       353 g~l~~~~~~t~~~~l~~~~~A~~~l~~~~~-~gKvvl~~  390 (392)
                      |++++...+++.++++|+++||+.+.+.+. ..|+++.+
T Consensus       312 g~i~~~~lit~~~~~~~~~~a~~~~~~~~~~~~Kv~i~~  350 (350)
T COG1063         312 GKIDPEKLITHRLPLDDAAEAYELFADRKEEAIKVVLKP  350 (350)
T ss_pred             CCCChhHceEeeccHHHHHHHHHHHHhcCCCeEEEEecC
Confidence            999998777899999999999999998655 46988864

>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD)

Probab=100.00  E-value=4.4e-38  Score=303.40  Aligned_cols=296  Identities=26%  Similarity=0.354  Sum_probs=245.2

Q ss_pred             eeEEEEcccCCcceEEEeccccCCCCCCCeEEEEEeEEecChHhHHhhcCCCCCCCCCCCCcCCCceeEEEEEeCCCCCC
Q 016265           84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKE  163 (392)
Q Consensus        84 mka~v~~~~~~~~~l~~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~~~p~v~G~e~~G~V~~vG~~v~~  163 (392)
                      |||+++++++..  ++++ +.+.|+++++||+||+.++++|++|++.+.|.++.  ..+|.++|||++|+|+++|+++++
T Consensus         1 m~a~~~~~~~~~--~~~~-~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~--~~~p~~~g~e~~G~v~~vG~~v~~   75 (333)
T cd08296           1 YKAVQVTEPGGP--LELV-ERDVPLPGPGEVLIKVEACGVCHSDAFVKEGAMPG--LSYPRVPGHEVVGRIDAVGEGVSR   75 (333)
T ss_pred             CeEEEEccCCCC--ceEE-eccCCCCCCCEEEEEEEEEecchHHHHHHhCCCCC--CCCCcccCcceeEEEEEECCCCcc
Confidence            799999987543  7787 89999999999999999999999999999887642  345789999999999999999999


Q ss_pred             CCCCCEEEeccc-----c--------------cccCCCCCCCcceeEEEecCCceeeCCCCCCHHhHhccchhHHHHHHH
Q 016265          164 FKEGDEVYGDIN-----E--------------KALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEG  224 (392)
Q Consensus       164 ~~vGdrV~~~~~-----~--------------~~~~~~~~~G~~a~~~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~a  224 (392)
                      +++||+|++...     .              ....+....|+|++|+.++...++++|+++++++++.+++++.|+|++
T Consensus        76 ~~~Gd~V~~~~~~~~~~~~~~~~~g~~~~c~~~~~~~~~~~g~~a~~~~v~~~~~~~lp~~~~~~~aa~l~~~~~ta~~~  155 (333)
T cd08296          76 WKVGDRVGVGWHGGHCGTCDACRRGDFVHCENGKVTGVTRDGGYAEYMLAPAEALARIPDDLDAAEAAPLLCAGVTTFNA  155 (333)
T ss_pred             CCCCCEEEeccccCCCCCChhhhCcCcccCCCCCccCcccCCcceeEEEEchhheEeCCCCCCHHHhhhhhhhhHHHHHH
Confidence            999999986210     0              000112235899999999999999999999999999999999999999


Q ss_pred             HHhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCCccccC---CCCccEEE
Q 016265          225 LERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFEDL---PEKFDVVY  301 (392)
Q Consensus       225 l~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~~~---~~~~D~vi  301 (392)
                      ++...+++|++|+|+| +|++|++++|+||. .|++++++++++++++.++++|+++++++.+.++.+.   .+++|++|
T Consensus       156 ~~~~~~~~~~~vlV~g-~g~iG~~~~~~a~~-~G~~vi~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~d~vi  233 (333)
T cd08296         156 LRNSGAKPGDLVAVQG-IGGLGHLAVQYAAK-MGFRTVAISRGSDKADLARKLGAHHYIDTSKEDVAEALQELGGAKLIL  233 (333)
T ss_pred             HHhcCCCCCCEEEEEC-CcHHHHHHHHHHHH-CCCeEEEEeCChHHHHHHHHcCCcEEecCCCccHHHHHHhcCCCCEEE
Confidence            9877899999999999 89999999999999 5999999999999999999999999999876554221   24799999


Q ss_pred             ecCc---cHHHHHHhcccCCeEEEEcCCCCCCc----------eEEE--EeecHHHHHHHHHHHHCCCcccccCCCcccc
Q 016265          302 DAIG---QCDRAVKAIKEGGTVVALTGAVTPPG----------FRFV--VTSNGEVLKKLNPYLESGKVKPIIDPKGPFP  366 (392)
Q Consensus       302 d~~G---~~~~~~~~l~~~G~iv~~g~~~~~~~----------~~~~--~~~~~~~~~~~~~~l~~g~l~~~~~~t~~~~  366 (392)
                      |++|   .+..++++++++|+++.+|.......          ..+.  .......+.+++++++++++++.   .+.|+
T Consensus       234 ~~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~---v~~~~  310 (333)
T cd08296         234 ATAPNAKAISALVGGLAPRGKLLILGAAGEPVAVSPLQLIMGRKSIHGWPSGTALDSEDTLKFSALHGVRPM---VETFP  310 (333)
T ss_pred             ECCCchHHHHHHHHHcccCCEEEEEecCCCCCCcCHHHHhhcccEEEEeCcCCHHHHHHHHHHHHhCCCCce---EEEEE
Confidence            9986   46889999999999999986532111          1111  12235678889999999988765   25799


Q ss_pred             hhhHHHHHHHHHhCCCCeeEEEE
Q 016265          367 FSQVVEAFSYIETNKATGKVVIH  389 (392)
Q Consensus       367 l~~~~~A~~~l~~~~~~gKvvl~  389 (392)
                      ++|+.+||+.+.+++..||+|++
T Consensus       311 ~~~~~~a~~~~~~~~~~gk~v~~  333 (333)
T cd08296         311 LEKANEAYDRMMSGKARFRVVLT  333 (333)
T ss_pred             HHHHHHHHHHHHCCCCceeEEeC
Confidence            99999999999999999999874

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal

>PLN03154 putative allyl alcohol dehydrogenase; Provisional

Probab=100.00  E-value=9.3e-38  Score=302.77  Aligned_cols=293  Identities=25%  Similarity=0.312  Sum_probs=231.3

Q ss_pred             cceeEEEEcccC----CcceEEEecc--ccCC-CCCCCeEEEEEeEEecChHhHHhhcCCCCCCCCCCCCcCCC--ceeE
Q 016265           82 SEMKAWLYGEYG----GVDVLKFDEK--VTVP-QVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGY--DVAG  152 (392)
Q Consensus        82 ~~mka~v~~~~~----~~~~l~~~~~--~~~p-~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~~~p~v~G~--e~~G  152 (392)
                      .++|.|++.+.-    ..+.|++.+.  .+.| ++++||||||+.++++|+.|...+.+...  ....|.++|+  |++|
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~gevlVkv~a~~inp~~~~~~~~~~~--~~~~p~~~G~~~~~~G   84 (348)
T PLN03154          7 VENKQVILKNYIDGIPKETDMEVKLGNKIELKAPKGSGAFLVKNLYLSCDPYMRGRMRDFHD--SYLPPFVPGQRIEGFG   84 (348)
T ss_pred             ccceEEEEecCCCCCCCcccEEEEeecccCCCCCCCCCeEEEEEEEEccCHHHHHhhhccCC--CCCCCcCCCCeeEeeE
Confidence            346888884322    1255888832  4555 35899999999999999999765443221  1235788998  8899


Q ss_pred             EEEEeCCCCCCCCCCCEEEecccccccCCCCCCCcceeEEEecCCc--ee--eCCCCCCHH-hHhccchhHHHHHHHHH-
Q 016265          153 VVVKVGTQVKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERL--LA--PKPKNLDFV-QAAGLPLAIETAYEGLE-  226 (392)
Q Consensus       153 ~V~~vG~~v~~~~vGdrV~~~~~~~~~~~~~~~G~~a~~~~v~~~~--~~--~iP~~l~~~-~aa~l~~~~~ta~~al~-  226 (392)
                      +|..+|+++++|++||+|++.            |+|+||.+++...  ++  ++|++++++ +++.+++++.|||+++. 
T Consensus        85 ~v~~vg~~v~~~~~Gd~V~~~------------~~~aey~~v~~~~~~~~~~~~P~~~~~~~~aa~l~~~~~TA~~al~~  152 (348)
T PLN03154         85 VSKVVDSDDPNFKPGDLISGI------------TGWEEYSLIRSSDNQLRKIQLQDDIPLSYHLGLLGMAGFTAYAGFYE  152 (348)
T ss_pred             EEEEEecCCCCCCCCCEEEec------------CCcEEEEEEeccccceEEccCcCCCCHHHHHHHcccHHHHHHHHHHH
Confidence            999999999999999999863            7899999998753  54  459999987 67788999999999994 


Q ss_pred             hcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHH-hcCCcEEEeCCCC-cccc-----CCCCccE
Q 016265          227 RTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLK-SLGADLAIDYTKD-NFED-----LPEKFDV  299 (392)
Q Consensus       227 ~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~-~~G~~~vi~~~~~-~~~~-----~~~~~D~  299 (392)
                      ..++++|++|||+|++|++|++++|+||. .|+++++++++++|+++++ ++|+++++|+.+. ++.+     ..+++|+
T Consensus       153 ~~~~~~g~~VlV~GaaG~vG~~aiqlAk~-~G~~Vi~~~~~~~k~~~~~~~lGa~~vi~~~~~~~~~~~i~~~~~~gvD~  231 (348)
T PLN03154        153 VCSPKKGDSVFVSAASGAVGQLVGQLAKL-HGCYVVGSAGSSQKVDLLKNKLGFDEAFNYKEEPDLDAALKRYFPEGIDI  231 (348)
T ss_pred             hcCCCCCCEEEEecCccHHHHHHHHHHHH-cCCEEEEEcCCHHHHHHHHHhcCCCEEEECCCcccHHHHHHHHCCCCcEE
Confidence            57899999999999889999999999999 5999888889999999987 7999999998753 4322     1347999


Q ss_pred             EEecCc--cHHHHHHhcccCCeEEEEcCCCCCC--------c--------eEEEEee-------cHHHHHHHHHHHHCCC
Q 016265          300 VYDAIG--QCDRAVKAIKEGGTVVALTGAVTPP--------G--------FRFVVTS-------NGEVLKKLNPYLESGK  354 (392)
Q Consensus       300 vid~~G--~~~~~~~~l~~~G~iv~~g~~~~~~--------~--------~~~~~~~-------~~~~~~~~~~~l~~g~  354 (392)
                      +|||+|  .++.++++++++|+++.+|......        .        +.+....       ..+.++++++++++|+
T Consensus       232 v~d~vG~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~k~~~i~g~~~~~~~~~~~~~~~~~~~l~~~G~  311 (348)
T PLN03154        232 YFDNVGGDMLDAALLNMKIHGRIAVCGMVSLNSLSASQGIHNLYNLISKRIRMQGFLQSDYLHLFPQFLENVSRYYKQGK  311 (348)
T ss_pred             EEECCCHHHHHHHHHHhccCCEEEEECccccCCCCCCCCcccHHHHhhccceEEEEEHHHHHHHHHHHHHHHHHHHHCCC
Confidence            999998  4688999999999999998543110        0        0111000       1345788999999999


Q ss_pred             cccccCCCcccchhhHHHHHHHHHhCCCCeeEEEEeC
Q 016265          355 VKPIIDPKGPFPFSQVVEAFSYIETNKATGKVVIHPI  391 (392)
Q Consensus       355 l~~~~~~t~~~~l~~~~~A~~~l~~~~~~gKvvl~~~  391 (392)
                      +++.  +...|+|+++++|++.+++++..||+||++.
T Consensus       312 l~~~--~~~~~~L~~~~~A~~~l~~g~~~GKvVl~~~  346 (348)
T PLN03154        312 IVYI--EDMSEGLESAPAALVGLFSGKNVGKQVIRVA  346 (348)
T ss_pred             ccCc--eecccCHHHHHHHHHHHHcCCCCceEEEEec
Confidence            9875  3357999999999999999999999999874

>cd08293 PTGR2 Prostaglandin reductase

Probab=100.00  E-value=4.2e-38  Score=304.71  Aligned_cols=281  Identities=23%  Similarity=0.318  Sum_probs=222.8

Q ss_pred             cceEEEeccccCCCCC-CCeEEEEEeEEecChHhHHhhcCCCC-CCCCCCCCcCCCceeEEEEEeCCCCCCCCCCCEEEe
Q 016265           95 VDVLKFDEKVTVPQVK-EDQVLIKVVAAALNPVDGKRRQGKFK-ATDSPLPTVPGYDVAGVVVKVGTQVKEFKEGDEVYG  172 (392)
Q Consensus        95 ~~~l~~~~~~~~p~~~-~~eVlV~v~~~~i~~~D~~~~~g~~~-~~~~~~p~v~G~e~~G~V~~vG~~v~~~~vGdrV~~  172 (392)
                      ++.++++ +.+.|+|. +|||||||.|+|||+.|+........ ....++|.++|||++|+|+++|++|++|++||||++
T Consensus        20 ~~~~~~~-~~~~p~~~~~~evlV~v~a~gin~~d~~~~~~~~~~~~~~~~~~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~   98 (345)
T cd08293          20 AENFRVE-ECTLPDELNEGQVLVRTLYLSVDPYMRCRMNEDTGTDYLAPWQLSQVLDGGGVGVVEESKHQKFAVGDIVTS   98 (345)
T ss_pred             ccceEEE-eccCCCCCCCCeEEEEEEEEecCHHHHhhcccccccccCCCccCCCceEeeEEEEEeccCCCCCCCCCEEEe
Confidence            3678888 89999874 99999999999999999643321110 011346789999999999999999999999999987


Q ss_pred             cccccccCCCCCCCcceeEEEecCCceeeCCCCCCHHh----HhccchhHHHHHHHHH-hcCCCCC--CeEEEEcCCCcH
Q 016265          173 DINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQ----AAGLPLAIETAYEGLE-RTGFSAG--KSILVLNGSGGV  245 (392)
Q Consensus       173 ~~~~~~~~~~~~~G~~a~~~~v~~~~~~~iP~~l~~~~----aa~l~~~~~ta~~al~-~~~~~~g--~~VlI~Ga~G~v  245 (392)
                      +.           ++|+||++++++.++++|+++++.+    ++++++++.|||+++. .+++++|  ++|||+|++|++
T Consensus        99 ~~-----------~~~ae~~~v~~~~~~~iP~~~~~~~~~~~~a~~~~~~~ta~~al~~~~~~~~g~~~~VlI~ga~g~v  167 (345)
T cd08293          99 FN-----------WPWQTYAVLDGSSLEKVDPQLVDGHLSYFLGAVGLPGLTALIGIQEKGHITPGANQTMVVSGAAGAC  167 (345)
T ss_pred             cC-----------CCceeEEEecHHHeEEcCccccccchhHHhhhcCcHHHHHHHHHHHhccCCCCCCCEEEEECCCcHH
Confidence            41           5799999999999999999864332    4556788999999984 5678877  999999988999


Q ss_pred             HHHHHHHHHHhcCC-eEEEEeCCcccHHHHHh-cCCcEEEeCCCCcccc-----CCCCccEEEecCcc--HHHHHHhccc
Q 016265          246 GSLVIQLAKQVFGA-SRVAATSSTRNLEFLKS-LGADLAIDYTKDNFED-----LPEKFDVVYDAIGQ--CDRAVKAIKE  316 (392)
Q Consensus       246 G~~aiqlak~~~G~-~vv~~~~~~~~~~~~~~-~G~~~vi~~~~~~~~~-----~~~~~D~vid~~G~--~~~~~~~l~~  316 (392)
                      |++++|+||+ .|+ ++++++++++|++++++ +|+++++++.+.++.+     ..+++|++||++|.  +..+++++++
T Consensus       168 G~~aiqlAk~-~G~~~Vi~~~~s~~~~~~~~~~lGa~~vi~~~~~~~~~~i~~~~~~gvd~vid~~g~~~~~~~~~~l~~  246 (345)
T cd08293         168 GSLAGQIGRL-LGCSRVVGICGSDEKCQLLKSELGFDAAINYKTDNVAERLRELCPEGVDVYFDNVGGEISDTVISQMNE  246 (345)
T ss_pred             HHHHHHHHHH-cCCCEEEEEcCCHHHHHHHHHhcCCcEEEECCCCCHHHHHHHHCCCCceEEEECCCcHHHHHHHHHhcc
Confidence            9999999999 598 78888899999999876 9999999987765432     13589999999983  6889999999


Q ss_pred             CCeEEEEcCCC---C-----C------------CceEEE---Eeec----HHHHHHHHHHHHCCCcccccCCCcccchhh
Q 016265          317 GGTVVALTGAV---T-----P------------PGFRFV---VTSN----GEVLKKLNPYLESGKVKPIIDPKGPFPFSQ  369 (392)
Q Consensus       317 ~G~iv~~g~~~---~-----~------------~~~~~~---~~~~----~~~~~~~~~~l~~g~l~~~~~~t~~~~l~~  369 (392)
                      +|+++.+|...   .     +            ..+.+.   ....    .+.++++++++++|++++...  ..|+++|
T Consensus       247 ~G~iv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~i~~~~~--~~~~l~~  324 (345)
T cd08293         247 NSHIILCGQISQYNKDVPYPPPLPEATEAILKERNITRERFLVLNYKDKFEEAIAQLSQWVKEGKLKVKET--VYEGLEN  324 (345)
T ss_pred             CCEEEEEeeeecccCccCccccccchhHHHhhhcceEEEEEEeeccHhHHHHHHHHHHHHHHCCCccceeE--EeecHHH
Confidence            99999987321   0     0            011111   0111    244677889999999987633  4569999


Q ss_pred             HHHHHHHHHhCCCCeeEEEEe
Q 016265          370 VVEAFSYIETNKATGKVVIHP  390 (392)
Q Consensus       370 ~~~A~~~l~~~~~~gKvvl~~  390 (392)
                      +++||+.+.+++..||+|+++
T Consensus       325 ~~~A~~~~~~~~~~gkvvl~~  345 (345)
T cd08293         325 AGEAFQSMMNGGNIGKQIVKV  345 (345)
T ss_pred             HHHHHHHHhcCCCCCeEEEEC
Confidence            999999999998889999874

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid

>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH)

Probab=100.00  E-value=7.2e-38  Score=305.14  Aligned_cols=298  Identities=27%  Similarity=0.352  Sum_probs=240.5

Q ss_pred             eEEEEcccCCcceEEEeccccCCCCCCCeEEEEEeEEecChHhHHhhcCCCCCCCCCCCCcCCCceeEEEEEeCCCCCC-
Q 016265           85 KAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKE-  163 (392)
Q Consensus        85 ka~v~~~~~~~~~l~~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~~~p~v~G~e~~G~V~~vG~~v~~-  163 (392)
                      ||+++.++++  .++++ +.+.|.|+++||+||+.++++|++|++...|.++.  ..+|.++|||++|+|+++|++|++ 
T Consensus         2 ka~~~~~~~~--~l~~~-~~~~p~~~~~evlV~v~a~~l~~~d~~~~~g~~~~--~~~p~~~G~e~~G~V~~vG~~v~~~   76 (361)
T cd08231           2 RAAVLTGPGK--PLEIR-EVPLPDLEPGAVLVRVRLAGVCGSDVHTVAGRRPR--VPLPIILGHEGVGRVVALGGGVTTD   76 (361)
T ss_pred             eEEEEcCCCC--CCEEE-eccCCCCCCCeEEEEEEEEeecCccHHHhcCCCCC--CCCCcccccCCceEEEEeCCCcccc
Confidence            7899998874  37888 89999999999999999999999999999887642  356889999999999999999986 


Q ss_pred             -----CCCCCEEEecccc----cc--------------cCC-------CCCCCcceeEEEecCC-ceeeCCCCCCHHhHh
Q 016265          164 -----FKEGDEVYGDINE----KA--------------LEG-------PKQFGSLAEYTAVEER-LLAPKPKNLDFVQAA  212 (392)
Q Consensus       164 -----~~vGdrV~~~~~~----~~--------------~~~-------~~~~G~~a~~~~v~~~-~~~~iP~~l~~~~aa  212 (392)
                           |++||+|++....    +.              ..+       ....|+|++|+.++++ .++++|+++++++++
T Consensus        77 ~~~~~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~c~~~~~~~~~~~~~~~~~~g~~a~~~~v~~~~~~~~lP~~~~~~~aa  156 (361)
T cd08231          77 VAGEPLKVGDRVTWSVGAPCGRCYRCLVGDPTKCENRKKYGHEASCDDPHLSGGYAEHIYLPPGTAIVRVPDNVPDEVAA  156 (361)
T ss_pred             ccCCccCCCCEEEEcccCCCCCChhHhCcCccccccchhccccccccCCCCCcccceEEEecCCCceEECCCCCCHHHHH
Confidence                 9999999886210    00              001       1135999999999986 799999999999999


Q ss_pred             ccchhHHHHHHHHHhcCC-CCCCeEEEEcCCCcHHHHHHHHHHHhcCC-eEEEEeCCcccHHHHHhcCCcEEEeCCCCcc
Q 016265          213 GLPLAIETAYEGLERTGF-SAGKSILVLNGSGGVGSLVIQLAKQVFGA-SRVAATSSTRNLEFLKSLGADLAIDYTKDNF  290 (392)
Q Consensus       213 ~l~~~~~ta~~al~~~~~-~~g~~VlI~Ga~G~vG~~aiqlak~~~G~-~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~  290 (392)
                      .+++++.|||+++.+... ++|++|||+| +|++|++++|+|+.+ |+ +++++++++++.++++++|++.+++++....
T Consensus       157 ~~~~~~~ta~~al~~~~~~~~g~~vlI~g-~g~vG~~~~~lak~~-G~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~  234 (361)
T cd08231         157 PANCALATVLAALDRAGPVGAGDTVVVQG-AGPLGLYAVAAAKLA-GARRVIVIDGSPERLELAREFGADATIDIDELPD  234 (361)
T ss_pred             HhcCHHHHHHHHHHhccCCCCCCEEEEEC-CCHHHHHHHHHHHHc-CCCeEEEEcCCHHHHHHHHHcCCCeEEcCccccc
Confidence            888999999999976554 5999999997 799999999999995 99 8888888999999999999999998765432


Q ss_pred             c-------cC--CCCccEEEecCcc---HHHHHHhcccCCeEEEEcCCCCC--C----------ceEE--EEeecHHHHH
Q 016265          291 E-------DL--PEKFDVVYDAIGQ---CDRAVKAIKEGGTVVALTGAVTP--P----------GFRF--VVTSNGEVLK  344 (392)
Q Consensus       291 ~-------~~--~~~~D~vid~~G~---~~~~~~~l~~~G~iv~~g~~~~~--~----------~~~~--~~~~~~~~~~  344 (392)
                      .       +.  .+++|++|||+|.   +..++++++++|+++.+|.....  .          .+.+  ......+.++
T Consensus       235 ~~~~~~i~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (361)
T cd08231         235 PQRRAIVRDITGGRGADVVIEASGHPAAVPEGLELLRRGGTYVLVGSVAPAGTVPLDPERIVRKNLTIIGVHNYDPSHLY  314 (361)
T ss_pred             HHHHHHHHHHhCCCCCcEEEECCCChHHHHHHHHHhccCCEEEEEcCCCCCCccccCHHHHhhcccEEEEcccCCchhHH
Confidence            2       11  3579999999973   57899999999999999864311  1          1111  1112356788


Q ss_pred             HHHHHHHCC--CcccccCCCcccchhhHHHHHHHHHhCCCCeeEEEEe
Q 016265          345 KLNPYLESG--KVKPIIDPKGPFPFSQVVEAFSYIETNKATGKVVIHP  390 (392)
Q Consensus       345 ~~~~~l~~g--~l~~~~~~t~~~~l~~~~~A~~~l~~~~~~gKvvl~~  390 (392)
                      ++++++.++  .++....+++.|+++|+++||+.++++.. +|+||.|
T Consensus       315 ~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~a~~~~~~~~~-~k~vi~~  361 (361)
T cd08231         315 RAVRFLERTQDRFPFAELVTHRYPLEDINEALELAESGTA-LKVVIDP  361 (361)
T ss_pred             HHHHHHHhccCcCCchhheeeeeeHHHHHHHHHHHHcCCc-eEEEeCC
Confidence            899999988  44444455788999999999999988774 7999865

This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino

>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase

Probab=100.00  E-value=8.8e-38  Score=301.90  Aligned_cols=289  Identities=26%  Similarity=0.349  Sum_probs=232.2

Q ss_pred             eeEEEEcccCCcceEEEeccccC----CCCCCCeEEEEEeEEecChHhHHhhcCCCCCCCCCCCCcCCCce--eEEEEEe
Q 016265           84 MKAWLYGEYGGVDVLKFDEKVTV----PQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDV--AGVVVKV  157 (392)
Q Consensus        84 mka~v~~~~~~~~~l~~~~~~~~----p~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~~~p~v~G~e~--~G~V~~v  157 (392)
                      +|+|....+. .+.|+++ +.+.    |+|++|||||||.|++||+.|++.+.|.... ....|.++|+++  .|++..+
T Consensus         8 ~~~~~~~~~~-~~~~~~~-~~~~~~~~p~p~~~~vlv~v~~~~inp~d~~~~~g~~~~-~~~~p~~~g~~~~g~~~~~~v   84 (338)
T cd08295           8 LKAYVTGFPK-ESDLELR-TTKLTLKVPPGGSGDVLVKNLYLSCDPYMRGRMKGHDDS-LYLPPFKPGEVITGYGVAKVV   84 (338)
T ss_pred             EecCCCCCCC-ccceEEE-EecCCcCCCCCCCCeEEEEEEEEeeCHHHHHhhccCCcc-ccCCCcCCCCeEeccEEEEEE
Confidence            5666654444 4568888 7776    8899999999999999999999998885321 124577889754  4666668


Q ss_pred             CCCCCCCCCCCEEEecccccccCCCCCCCcceeEEEecC-CceeeCC-CCCCHH-hHhccchhHHHHHHHHH-hcCCCCC
Q 016265          158 GTQVKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEE-RLLAPKP-KNLDFV-QAAGLPLAIETAYEGLE-RTGFSAG  233 (392)
Q Consensus       158 G~~v~~~~vGdrV~~~~~~~~~~~~~~~G~~a~~~~v~~-~~~~~iP-~~l~~~-~aa~l~~~~~ta~~al~-~~~~~~g  233 (392)
                      |+++++|++||+|++.            |+|+||+++++ ..++++| ++++++ +++.+++++.|||+++. ..++++|
T Consensus        85 ~~~v~~~~vGd~V~~~------------g~~aey~~v~~~~~~~~lp~~~~~~~~~aa~l~~~~~tA~~~l~~~~~~~~g  152 (338)
T cd08295          85 DSGNPDFKVGDLVWGF------------TGWEEYSLIPRGQDLRKIDHTDVPLSYYLGLLGMPGLTAYAGFYEVCKPKKG  152 (338)
T ss_pred             ecCCCCCCCCCEEEec------------CCceeEEEecchhceeecCCCCCCHHHHHHhcccHHHHHHHHHHHhcCCCCC
Confidence            8999999999999863            68999999999 7999995 678887 78889999999999994 5789999


Q ss_pred             CeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHh-cCCcEEEeCCCC-cccc-----CCCCccEEEecCc-
Q 016265          234 KSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKS-LGADLAIDYTKD-NFED-----LPEKFDVVYDAIG-  305 (392)
Q Consensus       234 ~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~-~G~~~vi~~~~~-~~~~-----~~~~~D~vid~~G-  305 (392)
                      ++|||+|++|++|++++|+||. .|++++++++++++.+++++ +|+++++++.+. ++.+     ..+++|++||++| 
T Consensus       153 ~~VlI~Ga~G~vG~~aiqlAk~-~G~~Vi~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~i~~~~~~gvd~v~d~~g~  231 (338)
T cd08295         153 ETVFVSAASGAVGQLVGQLAKL-KGCYVVGSAGSDEKVDLLKNKLGFDDAFNYKEEPDLDAALKRYFPNGIDIYFDNVGG  231 (338)
T ss_pred             CEEEEecCccHHHHHHHHHHHH-cCCEEEEEeCCHHHHHHHHHhcCCceeEEcCCcccHHHHHHHhCCCCcEEEEECCCH
Confidence            9999999899999999999999 59999988999999999998 999999997543 4322     1358999999998 


Q ss_pred             -cHHHHHHhcccCCeEEEEcCCCCC--------Cc--------eEE---EEee----cHHHHHHHHHHHHCCCcccccCC
Q 016265          306 -QCDRAVKAIKEGGTVVALTGAVTP--------PG--------FRF---VVTS----NGEVLKKLNPYLESGKVKPIIDP  361 (392)
Q Consensus       306 -~~~~~~~~l~~~G~iv~~g~~~~~--------~~--------~~~---~~~~----~~~~~~~~~~~l~~g~l~~~~~~  361 (392)
                       .+..++++++++|+++.+|.....        ..        +.+   ....    ..+.++++++++.+|++++... 
T Consensus       232 ~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~l~~~g~l~~~~~-  310 (338)
T cd08295         232 KMLDAVLLNMNLHGRIAACGMISQYNLEWPEGVRNLLNIIYKRVKIQGFLVGDYLHRYPEFLEEMSGYIKEGKLKYVED-  310 (338)
T ss_pred             HHHHHHHHHhccCcEEEEecccccCCCCCCCCccCHHHHhhccceeeEEEehhhHHHHHHHHHHHHHHHHCCCeEceee-
Confidence             468899999999999998753210        00        011   1111    1245788899999999987633 


Q ss_pred             CcccchhhHHHHHHHHHhCCCCeeEEEEe
Q 016265          362 KGPFPFSQVVEAFSYIETNKATGKVVIHP  390 (392)
Q Consensus       362 t~~~~l~~~~~A~~~l~~~~~~gKvvl~~  390 (392)
                       ..|+++++++|++.+++++..||+|+++
T Consensus       311 -~~~~l~~~~~A~~~~~~~~~~GkvVl~~  338 (338)
T cd08295         311 -IADGLESAPEAFVGLFTGSNIGKQVVKV  338 (338)
T ss_pred             -cccCHHHHHHHHHHHhcCCCCceEEEEC
Confidence             4599999999999999999899999864

This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in

>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity

Probab=100.00  E-value=1.2e-37  Score=299.17  Aligned_cols=284  Identities=24%  Similarity=0.334  Sum_probs=230.6

Q ss_pred             ceeEEEEcc-c-CCc--ceEEEeccccCCCCCCCeEEEEEeEEecChHhHHhhcCCCCCCCCCCCCcCCCceeEEEEEeC
Q 016265           83 EMKAWLYGE-Y-GGV--DVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVG  158 (392)
Q Consensus        83 ~mka~v~~~-~-~~~--~~l~~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~~~p~v~G~e~~G~V~~vG  158 (392)
                      +||+|++.+ + +..  +.++++ +.+.|+|++|||+|||.++|||+.|.+...+     ...+|.++|+|++|+|++  
T Consensus         2 ~~~~~~~~~~~~~~~~~~~l~~~-~~~~p~~~~~evlVkv~a~~in~~~~~~~~~-----~~~~p~v~G~e~~G~V~~--   73 (329)
T cd08294           2 KAKTWVLKKHFDGKPKESDFELV-EEELPPLKDGEVLCEALFLSVDPYMRPYSKR-----LNEGDTMIGTQVAKVIES--   73 (329)
T ss_pred             CceEEEEecCCCCCCCccceEEE-ecCCCCCCCCcEEEEEEEEecCHHHhccccc-----CCCCCcEecceEEEEEec--
Confidence            589999988 3 444  778999 8999999999999999999999987652211     123578999999999985  


Q ss_pred             CCCCCCCCCCEEEecccccccCCCCCCCcceeEEEecCC---ceeeCCCCCCH-----HhHhccchhHHHHHHHH-HhcC
Q 016265          159 TQVKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEER---LLAPKPKNLDF-----VQAAGLPLAIETAYEGL-ERTG  229 (392)
Q Consensus       159 ~~v~~~~vGdrV~~~~~~~~~~~~~~~G~~a~~~~v~~~---~~~~iP~~l~~-----~~aa~l~~~~~ta~~al-~~~~  229 (392)
                       .+++|++||||++.            ++|++|++++.+   .++++|+++++     ..++++++++.|||+++ +..+
T Consensus        74 -~~~~~~~Gd~V~~~------------~~~~~~~~~~~~~~~~~~~iP~~~~~~~~~~~~~a~~~~~~~ta~~al~~~~~  140 (329)
T cd08294          74 -KNSKFPVGTIVVAS------------FGWRTHTVSDGKDQPDLYKLPADLPDDLPPSLALGVLGMPGLTAYFGLLEICK  140 (329)
T ss_pred             -CCCCCCCCCEEEee------------CCeeeEEEECCccccceEECCccccccCChHHHHHhcccHHHHHHHHHHHhcC
Confidence             45689999999973            578999999999   99999999982     33346788999999998 5688


Q ss_pred             CCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCCcccc-----CCCCccEEEecC
Q 016265          230 FSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFED-----LPEKFDVVYDAI  304 (392)
Q Consensus       230 ~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~~-----~~~~~D~vid~~  304 (392)
                      +++|++|||+||+|++|++++|+|+. .|+++++++++++++++++++|+++++++.+.++.+     ..+++|++||++
T Consensus       141 ~~~g~~vlI~ga~g~vG~~aiqlA~~-~G~~vi~~~~s~~~~~~l~~~Ga~~vi~~~~~~~~~~v~~~~~~gvd~vld~~  219 (329)
T cd08294         141 PKAGETVVVNGAAGAVGSLVGQIAKI-KGCKVIGCAGSDDKVAWLKELGFDAVFNYKTVSLEEALKEAAPDGIDCYFDNV  219 (329)
T ss_pred             CCCCCEEEEecCccHHHHHHHHHHHH-cCCEEEEEeCCHHHHHHHHHcCCCEEEeCCCccHHHHHHHHCCCCcEEEEECC
Confidence            99999999999999999999999999 599999899999999999999999999998766532     135799999999


Q ss_pred             c--cHHHHHHhcccCCeEEEEcCCC---CC-----C---------ceEEEE--e-----ecHHHHHHHHHHHHCCCcccc
Q 016265          305 G--QCDRAVKAIKEGGTVVALTGAV---TP-----P---------GFRFVV--T-----SNGEVLKKLNPYLESGKVKPI  358 (392)
Q Consensus       305 G--~~~~~~~~l~~~G~iv~~g~~~---~~-----~---------~~~~~~--~-----~~~~~~~~~~~~l~~g~l~~~  358 (392)
                      |  .+..++++++++|+++.+|...   ..     .         .+.+..  .     ...+.++++++++++|++++.
T Consensus       220 g~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~i~~~  299 (329)
T cd08294         220 GGEFSSTVLSHMNDFGRVAVCGSISTYNDKEPKKGPYVQETIIFKQLKMEGFIVYRWQDRWPEALKQLLKWIKEGKLKYR  299 (329)
T ss_pred             CHHHHHHHHHhhccCCEEEEEcchhccCCCCCCcCcccHHHHhhhcceEEEEEhhhhHHHHHHHHHHHHHHHHCCCCcCC
Confidence            8  3688999999999999887421   00     0         011111  0     012346788899999999876


Q ss_pred             cCCCcccchhhHHHHHHHHHhCCCCeeEEEEe
Q 016265          359 IDPKGPFPFSQVVEAFSYIETNKATGKVVIHP  390 (392)
Q Consensus       359 ~~~t~~~~l~~~~~A~~~l~~~~~~gKvvl~~  390 (392)
                      ..  ..|+++++++|++.+++++..||+|+++
T Consensus       300 ~~--~~~~l~~~~~A~~~~~~~~~~gkvvv~~  329 (329)
T cd08294         300 EH--VTEGFENMPQAFIGMLKGENTGKAIVKV  329 (329)
T ss_pred             cc--cccCHHHHHHHHHHHHcCCCCCeEEEeC
Confidence            33  4689999999999999999899999864

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac

>PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional

Probab=100.00  E-value=1.3e-37  Score=298.93  Aligned_cols=296  Identities=27%  Similarity=0.398  Sum_probs=249.3

Q ss_pred             ceeEEEEcccCCcceEEEeccccCCCCCCCeEEEEEeEEecChHhHHhhcCCCCCCCCCCCCcCCCceeEEEEEeCCCCC
Q 016265           83 EMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVK  162 (392)
Q Consensus        83 ~mka~v~~~~~~~~~l~~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~~~p~v~G~e~~G~V~~vG~~v~  162 (392)
                      +||++++.+++.+..++++ +++.|.++++||+||+.++|+|++|++...|.++.  ..+|.++|||++|+|+.+|++++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ev~i~v~~~gi~~~d~~~~~g~~~~--~~~~~~~g~e~~G~v~~vG~~v~   77 (327)
T PRK10754          1 MAKRIEFHKHGGPEVLQAV-EFTPADPAENEVQVENKAIGINYIDTYIRSGLYPP--PSLPSGLGTEAAGVVSKVGSGVK   77 (327)
T ss_pred             CceEEEEeccCChhHeEEe-eccCCCCCCCEEEEEEEEEEcCHHHhhhcCCCCCC--CCCCCccCcceEEEEEEeCCCCC
Confidence            5899999998888789998 88999999999999999999999999998887642  33578899999999999999999


Q ss_pred             CCCCCCEEEecccccccCCCCCCCcceeEEEecCCceeeCCCCCCHHhHhccchhHHHHHHHHH-hcCCCCCCeEEEEcC
Q 016265          163 EFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLE-RTGFSAGKSILVLNG  241 (392)
Q Consensus       163 ~~~vGdrV~~~~~~~~~~~~~~~G~~a~~~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~al~-~~~~~~g~~VlI~Ga  241 (392)
                      .+++||+|++...        ..|+|++|+.++.+.++++|+++++++++.+++.+.+||+++. ...+++|++|+|+|+
T Consensus        78 ~~~~Gd~V~~~~~--------~~g~~~~~v~v~~~~~~~lp~~~~~~~~~~~~~~~~ta~~~l~~~~~~~~g~~vlI~g~  149 (327)
T PRK10754         78 HIKVGDRVVYAQS--------ALGAYSSVHNVPADKAAILPDAISFEQAAASFLKGLTVYYLLRKTYEIKPDEQFLFHAA  149 (327)
T ss_pred             CCCCCCEEEECCC--------CCcceeeEEEcCHHHceeCCCCCCHHHHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEeC
Confidence            9999999986421        2589999999999999999999999999998889999999985 477899999999999


Q ss_pred             CCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCCcccc----C--CCCccEEEecCcc--HHHHHHh
Q 016265          242 SGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFED----L--PEKFDVVYDAIGQ--CDRAVKA  313 (392)
Q Consensus       242 ~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~~----~--~~~~D~vid~~G~--~~~~~~~  313 (392)
                      +|.+|++++|+||. .|++++.++.+++++++++++|++++++.++.++.+    .  .+++|++|||+|.  ...++++
T Consensus       150 ~g~ig~~~~~lak~-~G~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~~~~~~~~~~~~~~  228 (327)
T PRK10754        150 AGGVGLIACQWAKA-LGAKLIGTVGSAQKAQRAKKAGAWQVINYREENIVERVKEITGGKKVRVVYDSVGKDTWEASLDC  228 (327)
T ss_pred             CcHHHHHHHHHHHH-cCCEEEEEeCCHHHHHHHHHCCCCEEEcCCCCcHHHHHHHHcCCCCeEEEEECCcHHHHHHHHHH
Confidence            99999999999999 599999999999999999999999999877655422    1  3579999999983  5788999


Q ss_pred             cccCCeEEEEcCCCCC-C--ce--------EEEEe-------ec----HHHHHHHHHHHHCCCcccccCCCcccchhhHH
Q 016265          314 IKEGGTVVALTGAVTP-P--GF--------RFVVT-------SN----GEVLKKLNPYLESGKVKPIIDPKGPFPFSQVV  371 (392)
Q Consensus       314 l~~~G~iv~~g~~~~~-~--~~--------~~~~~-------~~----~~~~~~~~~~l~~g~l~~~~~~t~~~~l~~~~  371 (392)
                      ++++|+++.+|..... .  .+        .+...       .+    ...+.++++++++|++++....++.|+++++.
T Consensus       229 l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~l~~~~~~~~~~~~~~~~  308 (327)
T PRK10754        229 LQRRGLMVSFGNASGPVTGVNLGILNQKGSLYVTRPSLQGYITTREELTEASNELFSLIASGVIKVDVAEQQKFPLKDAQ  308 (327)
T ss_pred             hccCCEEEEEccCCCCCCCcCHHHHhccCceEEecceeecccCCHHHHHHHHHHHHHHHHCCCeeeecccCcEEcHHHHH
Confidence            9999999999854311 1  10        11100       01    23356788999999998765567899999999


Q ss_pred             HHHHHHHhCCCCeeEEEEe
Q 016265          372 EAFSYIETNKATGKVVIHP  390 (392)
Q Consensus       372 ~A~~~l~~~~~~gKvvl~~  390 (392)
                      ++++.+.+++..+|+|+.+
T Consensus       309 ~a~~~~~~~~~~~~~~~~~  327 (327)
T PRK10754        309 RAHEILESRATQGSSLLIP  327 (327)
T ss_pred             HHHHHHHcCCCcceEEEeC
Confidence            9999999999899999975

>KOG0025 consensus Zn2+-binding dehydrogenase (nuclear receptor binding factor-1) [Transcription; Energy production and conversion]

Probab=100.00  E-value=4.6e-38  Score=280.63  Aligned_cols=300  Identities=29%  Similarity=0.409  Sum_probs=247.7

Q ss_pred             CCCCcceeEEEEcccCCc-ceEEEeccccCCCCCCCeEEEEEeEEecChHhHHhhcCCCCCCCCCCCCcCCCceeEEEEE
Q 016265           78 GTVPSEMKAWLYGEYGGV-DVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVK  156 (392)
Q Consensus        78 ~~~p~~mka~v~~~~~~~-~~l~~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~~~p~v~G~e~~G~V~~  156 (392)
                      +.||...|+++|.++|++ +++++. +.++|.....+|+|+..|+.|||+|+..++|.|| ..+++|.+-|+|++|+|+.
T Consensus        14 ~q~~~~~kalvY~~hgdP~kVlql~-~~~~p~~~~s~v~Vk~LAaPINPsDIN~IQGvYp-vrP~~PAVgGnEGv~eVv~   91 (354)
T KOG0025|consen   14 SQMPARSKALVYSEHGDPAKVLQLK-NLELPAVPGSDVLVKMLAAPINPSDINQIQGVYP-VRPELPAVGGNEGVGEVVA   91 (354)
T ss_pred             cccccccceeeecccCCchhhheee-cccCCCCCCCceeeeeeecCCChHHhhhhccccC-CCCCCCcccCCcceEEEEE
Confidence            345666799999999987 788999 8999998888899999999999999999999998 4567899999999999999


Q ss_pred             eCCCCCCCCCCCEEEecccccccCCCCCCCcceeEEEecCCceeeCCCCCCHHhHhccchhHHHHHHHHHh-cCCCCCCe
Q 016265          157 VGTQVKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLER-TGFSAGKS  235 (392)
Q Consensus       157 vG~~v~~~~vGdrV~~~~~~~~~~~~~~~G~~a~~~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~al~~-~~~~~g~~  235 (392)
                      +|+++++|++||+|+....        ..|+|++|.+.+++.++++++.++++.||++..+.+|||+.|.+ .++.+||+
T Consensus        92 vGs~vkgfk~Gd~VIp~~a--------~lGtW~t~~v~~e~~Li~vd~~~pl~~AAT~~VNP~TAyrmL~dfv~L~~GD~  163 (354)
T KOG0025|consen   92 VGSNVKGFKPGDWVIPLSA--------NLGTWRTEAVFSESDLIKVDKDIPLASAATLSVNPCTAYRMLKDFVQLNKGDS  163 (354)
T ss_pred             ecCCcCccCCCCeEeecCC--------CCccceeeEeecccceEEcCCcCChhhhheeccCchHHHHHHHHHHhcCCCCe
Confidence            9999999999999998653        36999999999999999999999999999999999999999964 68999999


Q ss_pred             EEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHH----HHhcCCcEEEeCCCCc---ccc---CCCCccEEEecCc
Q 016265          236 ILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEF----LKSLGADLAIDYTKDN---FED---LPEKFDVVYDAIG  305 (392)
Q Consensus       236 VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~----~~~~G~~~vi~~~~~~---~~~---~~~~~D~vid~~G  305 (392)
                      |+..||.+++|++.+|+||+ +|.+.|.++++....+.    ++++||++||.-.+..   ...   ...++.+.|||+|
T Consensus       164 vIQNganS~VG~~ViQlaka-~GiktinvVRdR~~ieel~~~Lk~lGA~~ViTeeel~~~~~~k~~~~~~~prLalNcVG  242 (354)
T KOG0025|consen  164 VIQNGANSGVGQAVIQLAKA-LGIKTINVVRDRPNIEELKKQLKSLGATEVITEEELRDRKMKKFKGDNPRPRLALNCVG  242 (354)
T ss_pred             eeecCcccHHHHHHHHHHHH-hCcceEEEeecCccHHHHHHHHHHcCCceEecHHHhcchhhhhhhccCCCceEEEeccC
Confidence            99999999999999999999 59999999987766554    4679999998643321   111   2346899999998


Q ss_pred             --cHHHHHHhcccCCeEEEEcCCCCC-CceE-------------EEEe----------ecHHHHHHHHHHHHCCCccccc
Q 016265          306 --QCDRAVKAIKEGGTVVALTGAVTP-PGFR-------------FVVT----------SNGEVLKKLNPYLESGKVKPII  359 (392)
Q Consensus       306 --~~~~~~~~l~~~G~iv~~g~~~~~-~~~~-------------~~~~----------~~~~~~~~~~~~l~~g~l~~~~  359 (392)
                        +.....+.|..||.++.+|+.... ..+.             |.+.          ...+.+.++.+|++.|++....
T Consensus       243 Gksa~~iar~L~~GgtmvTYGGMSkqPv~~~ts~lIFKdl~~rGfWvt~W~~~~~~pe~~~~~i~~~~~l~~~G~i~~~~  322 (354)
T KOG0025|consen  243 GKSATEIARYLERGGTMVTYGGMSKQPVTVPTSLLIFKDLKLRGFWVTRWKKEHKSPEERKEMIDELCDLYRRGKLKAPN  322 (354)
T ss_pred             chhHHHHHHHHhcCceEEEecCccCCCcccccchheeccceeeeeeeeehhhccCCcHHHHHHHHHHHHHHHcCeecccc
Confidence              467888999999999999988722 1111             1110          1134578899999999998763


Q ss_pred             CCCcccchhhHHHHHHHHHhCCC-CeeEEEEe
Q 016265          360 DPKGPFPFSQVVEAFSYIETNKA-TGKVVIHP  390 (392)
Q Consensus       360 ~~t~~~~l~~~~~A~~~l~~~~~-~gKvvl~~  390 (392)
                        ....+|++...|++...+... .||-++.+
T Consensus       323 --~e~v~L~~~~tald~~L~~~~~~~Kq~i~~  352 (354)
T KOG0025|consen  323 --CEKVPLADHKTALDAALSKFGKSGKQIIVL  352 (354)
T ss_pred             --ceeeechhhhHHHHHHHHHhccCCceEEEe
Confidence              356899999999887655443 36766654

>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=100.00  E-value=2.6e-37  Score=299.60  Aligned_cols=303  Identities=33%  Similarity=0.493  Sum_probs=243.9

Q ss_pred             eeEEEEcccCCcceEEEeccccCCCCCCCeEEEEEeEEecChHhHHhhcCCCCC------------------CCCCCCCc
Q 016265           84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKA------------------TDSPLPTV  145 (392)
Q Consensus        84 mka~v~~~~~~~~~l~~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~------------------~~~~~p~v  145 (392)
                      ||++++.+++..+.+.+.++.+.|.+.+++|+||+.++++|++|++.+.|.++.                  ....+|.+
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~~~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~   80 (350)
T cd08274           1 MRAVLLTGHGGLDKLVYRDDVPVPTPAPGEVLIRVGACGVNNTDINTREGWYSTEVDGATDSTGAGEAGWWGGTLSFPRI   80 (350)
T ss_pred             CeEEEEeccCCccceeecccCCCCCCCCCeEEEEEEeccCCHHHHHHhcCCCCCccccccccccccccccccCCCCCCcc
Confidence            789999877765556666345778889999999999999999999988876531                  12456889


Q ss_pred             CCCceeEEEEEeCCCCCCCCCCCEEEecccccc----------cCCCCCCCcceeEEEecCCceeeCCCCCCHHhHhccc
Q 016265          146 PGYDVAGVVVKVGTQVKEFKEGDEVYGDINEKA----------LEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLP  215 (392)
Q Consensus       146 ~G~e~~G~V~~vG~~v~~~~vGdrV~~~~~~~~----------~~~~~~~G~~a~~~~v~~~~~~~iP~~l~~~~aa~l~  215 (392)
                      +|||++|+|+++|+++++|++||+|++.....+          ..+...+|+|++|+.++...++++|+++++++++.++
T Consensus        81 ~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~~~~~~~a~l~  160 (350)
T cd08274          81 QGADIVGRVVAVGEGVDTARIGERVLVDPSIRDPPEDDPADIDYIGSERDGGFAEYTVVPAENAYPVNSPLSDVELATFP  160 (350)
T ss_pred             cCCcceEEEEEeCCCCCCCCCCCEEEEecCcCCCCccccccccccCCCCCccceEEEEecHHHceeCCCCCCHHHHHhcc
Confidence            999999999999999999999999988431111          1122235999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCCcccc---
Q 016265          216 LAIETAYEGLERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFED---  292 (392)
Q Consensus       216 ~~~~ta~~al~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~~---  292 (392)
                      +++.|||++++..++++|++|+|+|++|++|++++++|+.+ |+++++++.++ +++.++++|++.+++.....+.+   
T Consensus       161 ~~~~ta~~~~~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~-g~~vi~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~  238 (350)
T cd08274         161 CSYSTAENMLERAGVGAGETVLVTGASGGVGSALVQLAKRR-GAIVIAVAGAA-KEEAVRALGADTVILRDAPLLADAKA  238 (350)
T ss_pred             cHHHHHHHHHhhcCCCCCCEEEEEcCCcHHHHHHHHHHHhc-CCEEEEEeCch-hhHHHHhcCCeEEEeCCCccHHHHHh
Confidence            99999999998888999999999998899999999999995 99988887665 88889999998766654433211   


Q ss_pred             -CCCCccEEEecCc--cHHHHHHhcccCCeEEEEcCCCCC-Cc----------eEE--EEeecHHHHHHHHHHHHCCCcc
Q 016265          293 -LPEKFDVVYDAIG--QCDRAVKAIKEGGTVVALTGAVTP-PG----------FRF--VVTSNGEVLKKLNPYLESGKVK  356 (392)
Q Consensus       293 -~~~~~D~vid~~G--~~~~~~~~l~~~G~iv~~g~~~~~-~~----------~~~--~~~~~~~~~~~~~~~l~~g~l~  356 (392)
                       ..+++|++||++|  .++.++++++++|+++.+|..... ..          ..+  ......+.+.++++++.+++++
T Consensus       239 ~~~~~~d~vi~~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~  318 (350)
T cd08274         239 LGGEPVDVVADVVGGPLFPDLLRLLRPGGRYVTAGAIAGPVVELDLRTLYLKDLTLFGSTLGTREVFRRLVRYIEEGEIR  318 (350)
T ss_pred             hCCCCCcEEEecCCHHHHHHHHHHhccCCEEEEecccCCccccCCHHHhhhcceEEEEeecCCHHHHHHHHHHHHCCCcc
Confidence             2357999999998  468899999999999998743211 11          111  1112357789999999999987


Q ss_pred             cccCCCcccchhhHHHHHHHHHhCCCCeeEEEEe
Q 016265          357 PIIDPKGPFPFSQVVEAFSYIETNKATGKVVIHP  390 (392)
Q Consensus       357 ~~~~~t~~~~l~~~~~A~~~l~~~~~~gKvvl~~  390 (392)
                      +.  +++.|+++++.+||+.+.++...||+|+.|
T Consensus       319 ~~--~~~~~~~~~~~~a~~~~~~~~~~~kvvi~~  350 (350)
T cd08274         319 PV--VAKTFPLSEIREAQAEFLEKRHVGKLVLVP  350 (350)
T ss_pred             cc--cccccCHHHHHHHHHHHhcCCCceEEEEeC
Confidence            64  567899999999999999888889999865

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>PRK10083 putative oxidoreductase; Provisional

Probab=100.00  E-value=2.6e-37  Score=298.55  Aligned_cols=299  Identities=22%  Similarity=0.273  Sum_probs=239.1

Q ss_pred             eeEEEEcccCCcceEEEeccccCCCCCCCeEEEEEeEEecChHhHHhhcCCCCCCCCCCCCcCCCceeEEEEEeCCCCCC
Q 016265           84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKE  163 (392)
Q Consensus        84 mka~v~~~~~~~~~l~~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~~~p~v~G~e~~G~V~~vG~~v~~  163 (392)
                      |||+++.+++.   ++++ +++.|.|+++||+||+.++++|++|++.+.|.++.  ..+|.++|||++|+|+++|++|+.
T Consensus         1 m~a~~~~~~~~---~~~~-~~~~p~~~~~~vlV~v~~~gi~~~d~~~~~g~~~~--~~~p~i~G~e~~G~V~~vG~~v~~   74 (339)
T PRK10083          1 MKSIVIEKPNS---LAIE-ERPIPQPAAGEVRVKVKLAGICGSDSHIYRGHNPF--AKYPRVIGHEFFGVIDAVGEGVDA   74 (339)
T ss_pred             CeEEEEecCCe---eEEE-eccCCCCCCCeEEEEEEEEEEcccchHHHcCCCCc--CCCCcccccceEEEEEEECCCCcc
Confidence            78999987664   7888 89999999999999999999999999999887642  246889999999999999999999


Q ss_pred             CCCCCEEEeccccccc------C------------CCCCCCcceeEEEecCCceeeCCCCCCHHhHhccchhHHHHHHHH
Q 016265          164 FKEGDEVYGDINEKAL------E------------GPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGL  225 (392)
Q Consensus       164 ~~vGdrV~~~~~~~~~------~------------~~~~~G~~a~~~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~al  225 (392)
                      +++||+|+......+.      .            +...+|+|+||+.++...++++|+++++++++ +..++.++|+++
T Consensus        75 ~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~a~-~~~~~~~a~~~~  153 (339)
T PRK10083         75 ARIGERVAVDPVISCGHCYPCSIGKPNVCTSLVVLGVHRDGGFSEYAVVPAKNAHRIPDAIADQYAV-MVEPFTIAANVT  153 (339)
T ss_pred             CCCCCEEEEccccCCCCCccccCcCcccCCCCceEEEccCCcceeeEEechHHeEECcCCCCHHHHh-hhchHHHHHHHH
Confidence            9999999853211100      0            11235899999999999999999999998876 556677888777


Q ss_pred             HhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEE-EEeCCcccHHHHHhcCCcEEEeCCCCccccC----CCCccEE
Q 016265          226 ERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRV-AATSSTRNLEFLKSLGADLAIDYTKDNFEDL----PEKFDVV  300 (392)
Q Consensus       226 ~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv-~~~~~~~~~~~~~~~G~~~vi~~~~~~~~~~----~~~~D~v  300 (392)
                      +..++++|++|+|+| +|++|++++|+|+.++|++++ +++++++|+++++++|+++++++++..+.+.    +.++|++
T Consensus       154 ~~~~~~~g~~vlI~g-~g~vG~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~g~~~d~v  232 (339)
T PRK10083        154 GRTGPTEQDVALIYG-AGPVGLTIVQVLKGVYNVKAVIVADRIDERLALAKESGADWVINNAQEPLGEALEEKGIKPTLI  232 (339)
T ss_pred             HhcCCCCCCEEEEEC-CCHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHhCCcEEecCccccHHHHHhcCCCCCCEE
Confidence            788999999999999 899999999999963498744 5567888999999999999999876544321    2246799


Q ss_pred             EecCc---cHHHHHHhcccCCeEEEEcCCCCCCc----------eEEE-EeecHHHHHHHHHHHHCCCcccccCCCcccc
Q 016265          301 YDAIG---QCDRAVKAIKEGGTVVALTGAVTPPG----------FRFV-VTSNGEVLKKLNPYLESGKVKPIIDPKGPFP  366 (392)
Q Consensus       301 id~~G---~~~~~~~~l~~~G~iv~~g~~~~~~~----------~~~~-~~~~~~~~~~~~~~l~~g~l~~~~~~t~~~~  366 (392)
                      ||++|   .+..++++++++|+++.+|.......          +.+. .....+.+.++++++++|++++...+++.|+
T Consensus       233 id~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~  312 (339)
T PRK10083        233 IDAACHPSILEEAVTLASPAARIVLMGFSSEPSEIVQQGITGKELSIFSSRLNANKFPVVIDWLSKGLIDPEKLITHTFD  312 (339)
T ss_pred             EECCCCHHHHHHHHHHhhcCCEEEEEccCCCCceecHHHHhhcceEEEEEecChhhHHHHHHHHHcCCCChHHheeeeec
Confidence            99998   36889999999999999986432111          1111 1123567889999999999987544568899


Q ss_pred             hhhHHHHHHHHHhCC-CCeeEEEEe
Q 016265          367 FSQVVEAFSYIETNK-ATGKVVIHP  390 (392)
Q Consensus       367 l~~~~~A~~~l~~~~-~~gKvvl~~  390 (392)
                      ++++++|++.++++. ..+|+++.+
T Consensus       313 l~~~~~a~~~~~~~~~~~~kvvv~~  337 (339)
T PRK10083        313 FQHVADAIELFEKDQRHCCKVLLTF  337 (339)
T ss_pred             HHHHHHHHHHHhcCCCceEEEEEec
Confidence            999999999998654 458999876

>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases

Probab=100.00  E-value=2.5e-37  Score=300.24  Aligned_cols=299  Identities=26%  Similarity=0.327  Sum_probs=242.2

Q ss_pred             eeEEEEcccCCcceEEEeccccCCCCCCCeEEEEEeEEecChHhHHhhcCCCCCCCCCCCCcCCCceeEEEEEeCCCCCC
Q 016265           84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKE  163 (392)
Q Consensus        84 mka~v~~~~~~~~~l~~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~~~p~v~G~e~~G~V~~vG~~v~~  163 (392)
                      |||+++.+++.   ++++ +.+.|.+.++||+||+.++++|++|++.+.|.++.  ..+|.++|||++|+|+++|+++++
T Consensus         1 mka~~~~~~~~---~~l~-~~~~p~~~~~evlIkv~a~~i~~~d~~~~~g~~~~--~~~~~~~G~e~~G~V~~vG~~v~~   74 (351)
T cd08285           1 MKAFAMLGIGK---VGWI-EKPIPVCGPNDAIVRPTAVAPCTSDVHTVWGGAPG--ERHGMILGHEAVGVVEEVGSEVKD   74 (351)
T ss_pred             CceEEEccCCc---cEEE-ECCCCCCCCCeEEEEEEEEEechhhHHHhcCCCCC--CCCCcccCcceEEEEEEecCCcCc
Confidence            79999988775   5677 78889999999999999999999999988876532  345889999999999999999999


Q ss_pred             CCCCCEEEecccccc---------------------cCCCCCCCcceeEEEecCC--ceeeCCCCCCHHhHhccchhHHH
Q 016265          164 FKEGDEVYGDINEKA---------------------LEGPKQFGSLAEYTAVEER--LLAPKPKNLDFVQAAGLPLAIET  220 (392)
Q Consensus       164 ~~vGdrV~~~~~~~~---------------------~~~~~~~G~~a~~~~v~~~--~~~~iP~~l~~~~aa~l~~~~~t  220 (392)
                      +++||+|++.....+                     ..+...+|+|+||+.++..  .++++|+++++++++.+++.+.|
T Consensus        75 ~~~Gd~V~~~~~~~~~~c~~c~~g~~~~~~~~~~~~~~~~~~~g~~~~y~~v~~~~~~~~~lP~~~~~~~aa~~~~~~~t  154 (351)
T cd08285          75 FKPGDRVIVPAITPDWRSVAAQRGYPSQSGGMLGGWKFSNFKDGVFAEYFHVNDADANLAPLPDGLTDEQAVMLPDMMST  154 (351)
T ss_pred             cCCCCEEEEcCcCCCCCCHHHHCcCcccCcCCCCCccccCCCCcceeEEEEcchhhCceEECCCCCCHHHhhhhccchhh
Confidence            999999997431000                     0011236999999999974  89999999999999999999999


Q ss_pred             HHHHHHhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCe-EEEEeCCcccHHHHHhcCCcEEEeCCCCcccc----C--
Q 016265          221 AYEGLERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGAS-RVAATSSTRNLEFLKSLGADLAIDYTKDNFED----L--  293 (392)
Q Consensus       221 a~~al~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~-vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~~----~--  293 (392)
                      ||++++.+.+++|++|||+| +|++|++++|+||.+ |+. +++++++++|+++++++|+++++++.+.++.+    .  
T Consensus       155 a~~~~~~~~~~~g~~vlI~g-~g~iG~~~~~lak~~-G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~i~~~~~  232 (351)
T cd08285         155 GFHGAELANIKLGDTVAVFG-IGPVGLMAVAGARLR-GAGRIIAVGSRPNRVELAKEYGATDIVDYKNGDVVEQILKLTG  232 (351)
T ss_pred             HHHHHHccCCCCCCEEEEEC-CCHHHHHHHHHHHHc-CCCeEEEEeCCHHHHHHHHHcCCceEecCCCCCHHHHHHHHhC
Confidence            99998888999999999996 899999999999995 995 66677788899999999999999987655422    1  


Q ss_pred             CCCccEEEecCcc---HHHHHHhcccCCeEEEEcCCCCCC--ce------------EEE--E-eecHHHHHHHHHHHHCC
Q 016265          294 PEKFDVVYDAIGQ---CDRAVKAIKEGGTVVALTGAVTPP--GF------------RFV--V-TSNGEVLKKLNPYLESG  353 (392)
Q Consensus       294 ~~~~D~vid~~G~---~~~~~~~l~~~G~iv~~g~~~~~~--~~------------~~~--~-~~~~~~~~~~~~~l~~g  353 (392)
                      .+++|++|||+|.   +..++++++++|+++.+|......  .+            .+.  . ....+.++++++++++|
T Consensus       233 ~~~~d~vld~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g  312 (351)
T cd08285         233 GKGVDAVIIAGGGQDTFEQALKVLKPGGTISNVNYYGEDDYLPIPREEWGVGMGHKTINGGLCPGGRLRMERLASLIEYG  312 (351)
T ss_pred             CCCCcEEEECCCCHHHHHHHHHHhhcCCEEEEecccCCCceeecChhhhhhhccccEEEEeecCCccccHHHHHHHHHcC
Confidence            3579999999983   588999999999999987544211  11            011  1 11346788999999999


Q ss_pred             Cccccc-CCCcccchhhHHHHHHHHHhCCC-CeeEEEEe
Q 016265          354 KVKPII-DPKGPFPFSQVVEAFSYIETNKA-TGKVVIHP  390 (392)
Q Consensus       354 ~l~~~~-~~t~~~~l~~~~~A~~~l~~~~~-~gKvvl~~  390 (392)
                      ++++.. ...+.|+++|+++|++.+++++. .+|++|++
T Consensus       313 ~i~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~~~~~  351 (351)
T cd08285         313 RVDPSKLLTHHFFGFDDIEEALMLMKDKPDDLIKPVIIF  351 (351)
T ss_pred             CCChhhceeccccCHHHHHHHHHHHhcccCCeEEEEEeC
Confidence            998832 33456999999999999999874 58999864

This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase

Probab=100.00  E-value=4.7e-37  Score=295.19  Aligned_cols=273  Identities=24%  Similarity=0.350  Sum_probs=223.2

Q ss_pred             CCcceEEEeccccCCCCCCCeEEEEEeEEecChHhHHhhcCCCCCCCCCCCCcCCCceeEEEEEeCCCCCCCCCCCEEEe
Q 016265           93 GGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKEFKEGDEVYG  172 (392)
Q Consensus        93 ~~~~~l~~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~~~p~v~G~e~~G~V~~vG~~v~~~~vGdrV~~  172 (392)
                      ..++.+++. +.+.|+|++|||||||.++|||+.|+   .|.++.  ...|.++|+|++|+|+++|+   +|++||||++
T Consensus        14 ~~~~~l~~~-~~~~p~~~~~evlv~v~a~~~n~~~~---~g~~~~--~~~~~i~G~~~~g~v~~~~~---~~~~GdrV~~   84 (325)
T TIGR02825        14 PTDSDFELK-TVELPPLNNGEVLLEALFLSVDPYMR---VAAKRL--KEGDTMMGQQVARVVESKNV---ALPKGTIVLA   84 (325)
T ss_pred             CCCCceEEE-eccCCCCCCCcEEEEEEEEecCHHHh---cccCcC--CCCCcEecceEEEEEEeCCC---CCCCCCEEEE
Confidence            344678888 89999999999999999999999764   343321  22467999999999999874   6999999997


Q ss_pred             cccccccCCCCCCCcceeEEEecCCceeeC----CCCCCHHhH-hccchhHHHHHHHH-HhcCCCCCCeEEEEcCCCcHH
Q 016265          173 DINEKALEGPKQFGSLAEYTAVEERLLAPK----PKNLDFVQA-AGLPLAIETAYEGL-ERTGFSAGKSILVLNGSGGVG  246 (392)
Q Consensus       173 ~~~~~~~~~~~~~G~~a~~~~v~~~~~~~i----P~~l~~~~a-a~l~~~~~ta~~al-~~~~~~~g~~VlI~Ga~G~vG  246 (392)
                      .            ++|++|++++.+.+.++    |++++++++ +++++++.|||+++ +.+++++|++|||+|++|++|
T Consensus        85 ~------------~~~~~~~~~~~~~~~~l~~~~p~~~~~~~aaa~l~~~~~TA~~~l~~~~~~~~g~~VLI~ga~g~vG  152 (325)
T TIGR02825        85 S------------PGWTSHSISDGKDLEKLLTEWPDTLPLSLALGTVGMPGLTAYFGLLEICGVKGGETVMVNAAAGAVG  152 (325)
T ss_pred             e------------cCceeeEEechhheEEccccccCCCCHHHHHHhcccHHHHHHHHHHHHhCCCCCCEEEEeCCccHHH
Confidence            3            46999999999888777    999999997 67899999999998 578899999999999999999


Q ss_pred             HHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCC-cccc-----CCCCccEEEecCc--cHHHHHHhcccCC
Q 016265          247 SLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKD-NFED-----LPEKFDVVYDAIG--QCDRAVKAIKEGG  318 (392)
Q Consensus       247 ~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~-~~~~-----~~~~~D~vid~~G--~~~~~~~~l~~~G  318 (392)
                      ++++|+||. .|+++++++++++++++++++|+++++++++. .+.+     ..+++|++||++|  .++.++++++++|
T Consensus       153 ~~aiqlAk~-~G~~Vi~~~~s~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~gvdvv~d~~G~~~~~~~~~~l~~~G  231 (325)
T TIGR02825       153 SVVGQIAKL-KGCKVVGAAGSDEKVAYLKKLGFDVAFNYKTVKSLEETLKKASPDGYDCYFDNVGGEFSNTVIGQMKKFG  231 (325)
T ss_pred             HHHHHHHHH-cCCEEEEEeCCHHHHHHHHHcCCCEEEeccccccHHHHHHHhCCCCeEEEEECCCHHHHHHHHHHhCcCc
Confidence            999999999 59999999999999999999999999998763 3322     1357999999998  4688999999999


Q ss_pred             eEEEEcCCC-------CCC----------ceEEEE-e--e-----cHHHHHHHHHHHHCCCcccccCCCcccchhhHHHH
Q 016265          319 TVVALTGAV-------TPP----------GFRFVV-T--S-----NGEVLKKLNPYLESGKVKPIIDPKGPFPFSQVVEA  373 (392)
Q Consensus       319 ~iv~~g~~~-------~~~----------~~~~~~-~--~-----~~~~~~~~~~~l~~g~l~~~~~~t~~~~l~~~~~A  373 (392)
                      +++.+|...       .+.          .+.+.. .  .     ..+.++++++++++|++++...  ..|+++++++|
T Consensus       232 ~iv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~~~--~~~~l~~~~~A  309 (325)
T TIGR02825       232 RIAICGAISTYNRTGPLPPGPPPEIVIYQELRMEGFIVNRWQGEVRQKALKELLKWVLEGKIQYKEY--VIEGFENMPAA  309 (325)
T ss_pred             EEEEecchhhcccCCCCCCCcchHHHhhhcceEeEEEehhhhhhhhHHHHHHHHHHHHCCCccccee--ccccHHHHHHH
Confidence            999987532       110          011110 0  0     1346788999999999987633  46899999999


Q ss_pred             HHHHHhCCCCeeEEEE
Q 016265          374 FSYIETNKATGKVVIH  389 (392)
Q Consensus       374 ~~~l~~~~~~gKvvl~  389 (392)
                      ++.+++++..||+|++
T Consensus       310 ~~~~~~~~~~gkvVv~  325 (325)
T TIGR02825       310 FMGMLKGENLGKTIVK  325 (325)
T ss_pred             HHHHhcCCCCCeEEeC
Confidence            9999999988999874

Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.

>cd05284 arabinose_DH_like D-arabinose dehydrogenase

Probab=100.00  E-value=6.2e-37  Score=295.91  Aligned_cols=298  Identities=30%  Similarity=0.410  Sum_probs=244.9

Q ss_pred             eeEEEEcccCCcceEEEeccccCCCCCCCeEEEEEeEEecChHhHHhhcCCCCC-CCCCCCCcCCCceeEEEEEeCCCCC
Q 016265           84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKA-TDSPLPTVPGYDVAGVVVKVGTQVK  162 (392)
Q Consensus        84 mka~v~~~~~~~~~l~~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~-~~~~~p~v~G~e~~G~V~~vG~~v~  162 (392)
                      |||+++.+++..  +++. +.+.|+++++||+|++.++++|++|++.+.|.++. ....+|.++|||++|+|+++|+++.
T Consensus         1 ~ka~~~~~~~~~--~~~~-~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~G~e~~G~V~~vG~~v~   77 (340)
T cd05284           1 MKAARLYEYGKP--LRLE-DVPVPEPGPGQVLVRVGGAGVCHSDLHVIDGVWGGILPYKLPFTLGHENAGWVEEVGSGVD   77 (340)
T ss_pred             CeeeEeccCCCC--ceEE-eCCCCCCCCCeEEEEEEEEeecchhHHHHcCCCcccccCCCCeecccceeEEEEEeCCCCC
Confidence            799999987643  6777 78899999999999999999999999998887643 2345678999999999999999999


Q ss_pred             CCCCCCEEEecccccc------------------cCCCCCCCcceeEEEecCCceeeCCCCCCHHhHhccchhHHHHHHH
Q 016265          163 EFKEGDEVYGDINEKA------------------LEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEG  224 (392)
Q Consensus       163 ~~~vGdrV~~~~~~~~------------------~~~~~~~G~~a~~~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~a  224 (392)
                      ++++||+|++.....+                  ..+...+|+|++|+.++.+.++++|+++++++++.+++++.|||++
T Consensus        78 ~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~P~~ls~~~aa~l~~~~~ta~~~  157 (340)
T cd05284          78 GLKEGDPVVVHPPWGCGTCRYCRRGEENYCENARFPGIGTDGGFAEYLLVPSRRLVKLPRGLDPVEAAPLADAGLTAYHA  157 (340)
T ss_pred             cCcCCCEEEEcCCCCCCCChHHhCcCcccCCCCcccCccCCCcceeeEEecHHHeEECCCCCCHHHhhhhcchHHHHHHH
Confidence            9999999998642100                  0122346899999999999999999999999999999999999999


Q ss_pred             HHh--cCCCCCCeEEEEcCCCcHHHHHHHHHHHhcC-CeEEEEeCCcccHHHHHhcCCcEEEeCCCCcccc----C--CC
Q 016265          225 LER--TGFSAGKSILVLNGSGGVGSLVIQLAKQVFG-ASRVAATSSTRNLEFLKSLGADLAIDYTKDNFED----L--PE  295 (392)
Q Consensus       225 l~~--~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G-~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~~----~--~~  295 (392)
                      +..  ..+.+|++|||+| +|++|++++|+|+.+ | .+++++++++++.+.++++|+++++++++. +.+    .  ..
T Consensus       158 l~~~~~~~~~~~~vlI~g-~~~vg~~~~~~a~~~-g~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~i~~~~~~~  234 (340)
T cd05284         158 VKKALPYLDPGSTVVVIG-VGGLGHIAVQILRAL-TPATVIAVDRSEEALKLAERLGADHVLNASDD-VVEEVRELTGGR  234 (340)
T ss_pred             HHHhcccCCCCCEEEEEc-CcHHHHHHHHHHHHh-CCCcEEEEeCCHHHHHHHHHhCCcEEEcCCcc-HHHHHHHHhCCC
Confidence            965  3688899999999 677999999999995 7 789888889999999999999999998765 322    1  24


Q ss_pred             CccEEEecCcc---HHHHHHhcccCCeEEEEcCCCC-C--------CceEEE--EeecHHHHHHHHHHHHCCCcccccCC
Q 016265          296 KFDVVYDAIGQ---CDRAVKAIKEGGTVVALTGAVT-P--------PGFRFV--VTSNGEVLKKLNPYLESGKVKPIIDP  361 (392)
Q Consensus       296 ~~D~vid~~G~---~~~~~~~l~~~G~iv~~g~~~~-~--------~~~~~~--~~~~~~~~~~~~~~l~~g~l~~~~~~  361 (392)
                      ++|+++|++|.   .+.++++++++|+++.++.... .        ....+.  .......+.++++++++|.+++   +
T Consensus       235 ~~dvvld~~g~~~~~~~~~~~l~~~g~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~l~~---~  311 (340)
T cd05284         235 GADAVIDFVGSDETLALAAKLLAKGGRYVIVGYGGHGRLPTSDLVPTEISVIGSLWGTRAELVEVVALAESGKVKV---E  311 (340)
T ss_pred             CCCEEEEcCCCHHHHHHHHHHhhcCCEEEEEcCCCCCccCHHHhhhcceEEEEEecccHHHHHHHHHHHHhCCCCc---c
Confidence            79999999983   5889999999999999975431 1        111221  1124567889999999999875   3


Q ss_pred             CcccchhhHHHHHHHHHhCCCCeeEEEEe
Q 016265          362 KGPFPFSQVVEAFSYIETNKATGKVVIHP  390 (392)
Q Consensus       362 t~~~~l~~~~~A~~~l~~~~~~gKvvl~~  390 (392)
                      .+.|+++++++|++.+.+++..||+++.|
T Consensus       312 ~~~~~~~~~~~a~~~~~~~~~~gkvv~~~  340 (340)
T cd05284         312 ITKFPLEDANEALDRLREGRVTGRAVLVP  340 (340)
T ss_pred             eEEEeHHHHHHHHHHHHcCCccceEEecC
Confidence            46799999999999999999889999864

This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d

>cd08246 crotonyl_coA_red crotonyl-CoA reductase

Probab=100.00  E-value=1e-36  Score=300.38  Aligned_cols=310  Identities=29%  Similarity=0.443  Sum_probs=244.8

Q ss_pred             CCCCCCcceeEEEEc--ccCCc-ceEEEeccccCCCCCCCeEEEEEeEEecChHhHHhhcCCCCCC--------CCCCCC
Q 016265           76 KVGTVPSEMKAWLYG--EYGGV-DVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKAT--------DSPLPT  144 (392)
Q Consensus        76 ~~~~~p~~mka~v~~--~~~~~-~~l~~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~--------~~~~p~  144 (392)
                      +...+|.+|||+++.  +.+.+ ..++++ +.+.|.++++||+||+.+++||++|++...|.....        ....+.
T Consensus         5 ~~~~~~~~~~a~~~~~~~~g~~~~~~~~~-~~~~p~l~~~evlI~v~~~gi~~~d~~~~~g~~~~~~~~~~~~~~~~~~~   83 (393)
T cd08246           5 PLGVVPEKMYAFAIRPERYGDPAQAIQLE-DVPVPELGPGEVLVAVMAAGVNYNNVWAALGEPVSTFAARQRRGRDEPYH   83 (393)
T ss_pred             CCCcCchhhhheeeecccCCCcccceEEe-ecCCCCCCCCEEEEEEEEEeeccchhhhhcCCCccccccccccCCCCCcc
Confidence            344589999999985  34433 347888 889999999999999999999999999877641100        011235


Q ss_pred             cCCCceeEEEEEeCCCCCCCCCCCEEEecccccc------c------------CCC-CCCCcceeEEEecCCceeeCCCC
Q 016265          145 VPGYDVAGVVVKVGTQVKEFKEGDEVYGDINEKA------L------------EGP-KQFGSLAEYTAVEERLLAPKPKN  205 (392)
Q Consensus       145 v~G~e~~G~V~~vG~~v~~~~vGdrV~~~~~~~~------~------------~~~-~~~G~~a~~~~v~~~~~~~iP~~  205 (392)
                      ++|||++|+|+++|++++.+++||+|++.....+      .            .|. ..+|+|++|++++...++++|++
T Consensus        84 ~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~~~~~~~~g~~~~~g~~a~y~~v~~~~l~~iP~~  163 (393)
T cd08246          84 IGGSDASGIVWAVGEGVKNWKVGDEVVVHCSVWDGNDPERAGGDPMFDPSQRIWGYETNYGSFAQFALVQATQLMPKPKH  163 (393)
T ss_pred             ccccceEEEEEEeCCCCCcCCCCCEEEEeccccccCcccccccccccccccccccccCCCCcceeEEEechHHeEECCCC
Confidence            8999999999999999999999999988642100      0            010 13599999999999999999999


Q ss_pred             CCHHhHhccchhHHHHHHHHHh---cCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEE
Q 016265          206 LDFVQAAGLPLAIETAYEGLER---TGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLA  282 (392)
Q Consensus       206 l~~~~aa~l~~~~~ta~~al~~---~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~v  282 (392)
                      +++++++.+++++.|||+++..   +++++|++|+|+|++|++|++++++|+. .|+++++++++++|+++++++|++++
T Consensus       164 l~~~~aa~l~~~~~tA~~al~~~~~~~~~~g~~vlV~ga~g~iG~a~~~lak~-~G~~vv~~~~s~~~~~~~~~~G~~~~  242 (393)
T cd08246         164 LSWEEAAAYMLVGATAYRMLFGWNPNTVKPGDNVLIWGASGGLGSMAIQLARA-AGANPVAVVSSEEKAEYCRALGAEGV  242 (393)
T ss_pred             CCHHHHhhhcccHHHHHHHHhhcccccCCCCCEEEEECCCcHHHHHHHHHHHH-cCCeEEEEeCCHHHHHHHHHcCCCEE
Confidence            9999999999999999999853   6789999999999889999999999999 49999999999999999999999999


Q ss_pred             EeCCCCc----------------------cc----cC--CC-CccEEEecCc--cHHHHHHhcccCCeEEEEcCCCC-CC
Q 016265          283 IDYTKDN----------------------FE----DL--PE-KFDVVYDAIG--QCDRAVKAIKEGGTVVALTGAVT-PP  330 (392)
Q Consensus       283 i~~~~~~----------------------~~----~~--~~-~~D~vid~~G--~~~~~~~~l~~~G~iv~~g~~~~-~~  330 (392)
                      +++++.+                      +.    +.  .. ++|++|||+|  .++.++++++++|+++.+|.... ..
T Consensus       243 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~g~d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~  322 (393)
T cd08246         243 INRRDFDHWGVLPDVNSEAYTAWTKEARRFGKAIWDILGGREDPDIVFEHPGRATFPTSVFVCDRGGMVVICAGTTGYNH  322 (393)
T ss_pred             EcccccccccccccccchhhhhhhhccchHHHHHHHHhCCCCCCeEEEECCchHhHHHHHHHhccCCEEEEEcccCCCCC
Confidence            9874431                      10    11  23 7999999998  36889999999999999975431 11


Q ss_pred             ceE----------EE--EeecHHHHHHHHHHHHCCCcccccCCCcccchhhHHHHHHHHHhC-CCCeeEEEE
Q 016265          331 GFR----------FV--VTSNGEVLKKLNPYLESGKVKPIIDPKGPFPFSQVVEAFSYIETN-KATGKVVIH  389 (392)
Q Consensus       331 ~~~----------~~--~~~~~~~~~~~~~~l~~g~l~~~~~~t~~~~l~~~~~A~~~l~~~-~~~gKvvl~  389 (392)
                      .+.          ..  .....+.+.+++++++++.+.+.  +++.|+++|+++||+.+.++ +..||+++-
T Consensus       323 ~~~~~~l~~~~~~i~g~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~l~~~~~a~~~~~~~~~~~gkvvv~  392 (393)
T cd08246         323 TYDNRYLWMRQKRIQGSHFANDREAAEANRLVMKGRIDPC--LSKVFSLDETPDAHQLMHRNQHHVGNMAVL  392 (393)
T ss_pred             CCcHHHHhhheeEEEecccCcHHHHHHHHHHHHcCCceee--eeEEEeHHHHHHHHHHHHhCccccceEEEe
Confidence            111          00  01123478889999999998854  56889999999999999998 788998863

Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma

>TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein

Probab=100.00  E-value=1.4e-36  Score=292.77  Aligned_cols=295  Identities=32%  Similarity=0.495  Sum_probs=239.8

Q ss_pred             eEEEEccc---CCcceEEEeccccCCCCCCCeEEEEEeEEecChHhHHhhcCCCCCCCCCCCCcCCCceeEEEEEeCCCC
Q 016265           85 KAWLYGEY---GGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQV  161 (392)
Q Consensus        85 ka~v~~~~---~~~~~l~~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~~~p~v~G~e~~G~V~~vG~~v  161 (392)
                      |||++.++   +.++.+++. ++|.|+|+++||+||+.++++|+.|++.+.|..+.  ..+|.++|||++|+|+++|++|
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~-~~~~p~~~~~ev~Ikv~~~~i~~~d~~~~~g~~~~--~~~~~~~g~e~~G~V~~vG~~v   77 (336)
T TIGR02817         1 KAVGYKKPLPITDPDALVDI-DLPKPKPGGRDLLVEVKAISVNPVDTKVRARMAPE--AGQPKILGWDAAGVVVAVGDEV   77 (336)
T ss_pred             CceeeccccCCCCcccceec-ccCCCCCCCCEEEEEEEEEEcChHHHHHHcCCCCC--CCCCcccceeeEEEEEEeCCCC
Confidence            68899887   667788888 89999999999999999999999999988886532  3467899999999999999999


Q ss_pred             CCCCCCCEEEecccccccCCCCCCCcceeEEEecCCceeeCCCCCCHHhHhccchhHHHHHHHH-HhcCCCC-----CCe
Q 016265          162 KEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGL-ERTGFSA-----GKS  235 (392)
Q Consensus       162 ~~~~vGdrV~~~~~~~~~~~~~~~G~~a~~~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~al-~~~~~~~-----g~~  235 (392)
                      +.|++||+|++...      ....|+|++|++++++.++++|+++++++++.+++++.|||+++ ...++++     |++
T Consensus        78 ~~~~~Gd~V~~~~~------~~~~g~~~~~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~  151 (336)
T TIGR02817        78 TLFKPGDEVWYAGD------IDRPGSNAEFHLVDERIVGHKPKSLSFAEAAALPLTSITAWELLFDRLGINDPVAGDKRA  151 (336)
T ss_pred             CCCCCCCEEEEcCC------CCCCCcccceEEEcHHHcccCCCCCCHHHHhhhhHHHHHHHHHHHHhcCCCCCCCCCCCE
Confidence            99999999998531      11258999999999999999999999999999999999999998 4577776     999


Q ss_pred             EEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCCcccc----C-CCCccEEEecCc---cH
Q 016265          236 ILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFED----L-PEKFDVVYDAIG---QC  307 (392)
Q Consensus       236 VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~~----~-~~~~D~vid~~G---~~  307 (392)
                      |||+|++|++|++++|+||.++|++++++++++++.++++++|+++++++.. ++.+    . .+++|+++|++|   ..
T Consensus       152 vlV~ga~g~vg~~~~~~ak~~~G~~vi~~~~~~~~~~~l~~~g~~~~~~~~~-~~~~~i~~~~~~~vd~vl~~~~~~~~~  230 (336)
T TIGR02817       152 LLIIGGAGGVGSILIQLARQLTGLTVIATASRPESQEWVLELGAHHVIDHSK-PLKAQLEKLGLEAVSYVFSLTHTDQHF  230 (336)
T ss_pred             EEEEcCCcHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHHHHcCCCEEEECCC-CHHHHHHHhcCCCCCEEEEcCCcHHHH
Confidence            9999999999999999999833999999999999999999999999998654 2211    2 347999999975   36


Q ss_pred             HHHHHhcccCCeEEEEcCCCC-C------CceEEE---Ee--e---------cHHHHHHHHHHHHCCCcccccC-CCccc
Q 016265          308 DRAVKAIKEGGTVVALTGAVT-P------PGFRFV---VT--S---------NGEVLKKLNPYLESGKVKPIID-PKGPF  365 (392)
Q Consensus       308 ~~~~~~l~~~G~iv~~g~~~~-~------~~~~~~---~~--~---------~~~~~~~~~~~l~~g~l~~~~~-~t~~~  365 (392)
                      ..++++++++|+++.++.... .      ....+.   +.  .         ....++++++++.++.+++.+. ....+
T Consensus       231 ~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~  310 (336)
T TIGR02817       231 KEIVELLAPQGRFALIDDPAELDISPFKRKSISLHWEFMFTRSMFQTADMIEQHHLLNRVARLVDAGKIRTTLAETFGTI  310 (336)
T ss_pred             HHHHHHhccCCEEEEEcccccccchhhhhcceEEEEEEeecccccchhhhhhhHHHHHHHHHHHHCCCeeccchhccCCC
Confidence            889999999999998854320 0      111111   10  0         0145788999999999876422 11224


Q ss_pred             chhhHHHHHHHHHhCCCCeeEEEE
Q 016265          366 PFSQVVEAFSYIETNKATGKVVIH  389 (392)
Q Consensus       366 ~l~~~~~A~~~l~~~~~~gKvvl~  389 (392)
                      +++++++||+.+.+++..||++++
T Consensus       311 ~~~~~~~a~~~~~~~~~~gkvvv~  334 (336)
T TIGR02817       311 NAANLKRAHALIESGKARGKIVLE  334 (336)
T ss_pred             CHHHHHHHHHHHHcCCccceEEEe
Confidence            579999999999999988999875

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model.

>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1

Probab=100.00  E-value=1.7e-36  Score=298.14  Aligned_cols=299  Identities=25%  Similarity=0.343  Sum_probs=241.0

Q ss_pred             eeEEEEcccCCcceEEEeccccCCCC-CCCeEEEEEeEEecChHhHHhhcCCCCCCCCCCCCcCCCceeEEEEEeCCCCC
Q 016265           84 MKAWLYGEYGGVDVLKFDEKVTVPQV-KEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVK  162 (392)
Q Consensus        84 mka~v~~~~~~~~~l~~~~~~~~p~~-~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~~~p~v~G~e~~G~V~~vG~~v~  162 (392)
                      |||+++.+++.   ++++ +++.|.| ++++|+||+.+++||++|++.+.|.++.  .++|.++|||++|+|+++|++++
T Consensus         1 m~a~~~~~~~~---~~~~-~~~~p~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~--~~~p~~~G~e~~G~V~~vG~~v~   74 (386)
T cd08283           1 MKALVWHGKGD---VRVE-EVPDPKIEDPTDAIVRVTATAICGSDLHLYHGYIPG--MKKGDILGHEFMGVVEEVGPEVR   74 (386)
T ss_pred             CeeEEEecCCC---ceEE-eCCCCCCCCCCeEEEEEEEEecchhhhhhhcCCCCC--CCCCccccccceEEEEEeCCCCC
Confidence            79999986544   7888 8899988 4999999999999999999999998753  34688999999999999999999


Q ss_pred             CCCCCCEEEeccccc------c---------------------------cCC-----CCCCCcceeEEEecCC--ceeeC
Q 016265          163 EFKEGDEVYGDINEK------A---------------------------LEG-----PKQFGSLAEYTAVEER--LLAPK  202 (392)
Q Consensus       163 ~~~vGdrV~~~~~~~------~---------------------------~~~-----~~~~G~~a~~~~v~~~--~~~~i  202 (392)
                      ++++||+|++.....      +                           ..+     ....|+|++|++++.+  .++++
T Consensus        75 ~~~~Gd~V~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~~l  154 (386)
T cd08283          75 NLKVGDRVVVPFTIACGECFYCKRGLYSQCDNTNPSAEMAKLYGHAGAGIFGYSHLTGGYAGGQAEYVRVPFADVGPFKI  154 (386)
T ss_pred             CCCCCCEEEEcCcCCCCCChhhcCCCcccCCCcccccccccccccccccccccccccCCCCCeeEEEEEcccccCeEEEC
Confidence            999999998853110      0                           000     0136899999999988  89999


Q ss_pred             CCCCCHHhHhccchhHHHHHHHHHhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCe-EEEEeCCcccHHHHHhcCCcE
Q 016265          203 PKNLDFVQAAGLPLAIETAYEGLERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGAS-RVAATSSTRNLEFLKSLGADL  281 (392)
Q Consensus       203 P~~l~~~~aa~l~~~~~ta~~al~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~-vv~~~~~~~~~~~~~~~G~~~  281 (392)
                      |+++++++++.++.++.|||++++.+++++|++|+|+| +|++|++++++|+. .|+. +++++.++++++.+++++...
T Consensus       155 p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~g~~VlV~g-~G~vG~~~~~la~~-~g~~~vi~~~~~~~~~~~~~~~~~~~  232 (386)
T cd08283         155 PDDLSDEKALFLSDILPTGYHAAELAEVKPGDTVAVWG-CGPVGLFAARSAKL-LGAERVIAIDRVPERLEMARSHLGAE  232 (386)
T ss_pred             CCCCCHHHHhhhccchhhhHHHHhhccCCCCCEEEEEC-CCHHHHHHHHHHHH-cCCCEEEEEcCCHHHHHHHHHcCCcE
Confidence            99999999999999999999999878899999999996 79999999999999 4984 778888999999999985456


Q ss_pred             EEeCCCCc-ccc----C--CCCccEEEecCc------------------------cHHHHHHhcccCCeEEEEcCCCC-C
Q 016265          282 AIDYTKDN-FED----L--PEKFDVVYDAIG------------------------QCDRAVKAIKEGGTVVALTGAVT-P  329 (392)
Q Consensus       282 vi~~~~~~-~~~----~--~~~~D~vid~~G------------------------~~~~~~~~l~~~G~iv~~g~~~~-~  329 (392)
                      ++++...+ +.+    .  .+++|++|||+|                        .++.++++++++|+++.++.... .
T Consensus       233 vi~~~~~~~~~~~l~~~~~~~~~D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g~~~~~~  312 (386)
T cd08283         233 TINFEEVDDVVEALRELTGGRGPDVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIGVYGGTV  312 (386)
T ss_pred             EEcCCcchHHHHHHHHHcCCCCCCEEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEcCCCCCc
Confidence            77776553 322    1  237999999986                        25788999999999999976432 1


Q ss_pred             C----------ceEEE--EeecHHHHHHHHHHHHCCCcccccCCCcccchhhHHHHHHHHHhCC-CCeeEEEEe
Q 016265          330 P----------GFRFV--VTSNGEVLKKLNPYLESGKVKPIIDPKGPFPFSQVVEAFSYIETNK-ATGKVVIHP  390 (392)
Q Consensus       330 ~----------~~~~~--~~~~~~~~~~~~~~l~~g~l~~~~~~t~~~~l~~~~~A~~~l~~~~-~~gKvvl~~  390 (392)
                      .          .+.+.  .....+.++++++++.++++.+....++.|+++++++||+.+.++. ..+|++|++
T Consensus       313 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~g~l~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~~~~~  386 (386)
T cd08283         313 NKFPIGAAMNKGLTLRMGQTHVQRYLPRLLELIESGELDPSFIITHRLPLEDAPEAYKIFDKKEDGCIKVVLKP  386 (386)
T ss_pred             CccCHHHHHhCCcEEEeccCCchHHHHHHHHHHHcCCCChhHceEEEecHHHHHHHHHHHHhCCCCeEEEEecC
Confidence            1          11111  1123467889999999999987644567899999999999998877 458999864

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T

>TIGR01751 crot-CoA-red crotonyl-CoA reductase

Probab=100.00  E-value=2.3e-36  Score=298.33  Aligned_cols=309  Identities=30%  Similarity=0.444  Sum_probs=246.1

Q ss_pred             CCCcceeEEEEcc--cCCc-ceEEEeccccCCCCCCCeEEEEEeEEecChHhHHhhcCCCCC--------CCCCCC-CcC
Q 016265           79 TVPSEMKAWLYGE--YGGV-DVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKA--------TDSPLP-TVP  146 (392)
Q Consensus        79 ~~p~~mka~v~~~--~~~~-~~l~~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~--------~~~~~p-~v~  146 (392)
                      -+|++||||++..  ++++ +.+++. +.+.|.|+++||+||+.++++|++|++...+....        .....| .++
T Consensus         3 ~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~p~l~~~evlV~v~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~   81 (398)
T TIGR01751         3 VVPETMYAFAIREERDGDPRQAIQLE-VVPVPELGPGEVLVAVMAAGVNYNNVWAALGEPVSTFAFLRKYGRDDLPFHII   81 (398)
T ss_pred             ccchhhhheEEecccCCCcccceEEe-ecCCCCCCCCeEEEEEEEEecCchhhhhhcCCccchhhhhcccCCCCCCceec
Confidence            3678899999954  5654 568888 89999999999999999999999998877654210        001123 379


Q ss_pred             CCceeEEEEEeCCCCCCCCCCCEEEecccccc------c------------CC-CCCCCcceeEEEecCCceeeCCCCCC
Q 016265          147 GYDVAGVVVKVGTQVKEFKEGDEVYGDINEKA------L------------EG-PKQFGSLAEYTAVEERLLAPKPKNLD  207 (392)
Q Consensus       147 G~e~~G~V~~vG~~v~~~~vGdrV~~~~~~~~------~------------~~-~~~~G~~a~~~~v~~~~~~~iP~~l~  207 (392)
                      |||++|+|+++|++++.+++||+|++.....+      .            .| ...+|+|+||+.++.+.++++|++++
T Consensus        82 G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~ae~~~v~~~~~~~vP~~l~  161 (398)
T TIGR01751        82 GSDASGVVWRVGPGVTRWKVGDEVVASCLQVDLTAPDGRVGDPMLSSEQRIWGYETNFGSFAEFALVKDYQLMPKPKHLT  161 (398)
T ss_pred             ccceEEEEEEeCCCCCCCCCCCEEEEccccccCCchhhccCccccccccccccccCCCccceEEEEechHHeEECCCCCC
Confidence            99999999999999999999999988542100      0            00 11358999999999999999999999


Q ss_pred             HHhHhccchhHHHHHHHHHh---cCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEe
Q 016265          208 FVQAAGLPLAIETAYEGLER---TGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAID  284 (392)
Q Consensus       208 ~~~aa~l~~~~~ta~~al~~---~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~  284 (392)
                      +++++.+++++.|||+++..   .++.+|++|+|+|++|++|++++|+|+. .|+++++++.++++++.++++|++.++|
T Consensus       162 ~~~aa~~~~~~~ta~~al~~~~~~~~~~g~~vlV~Ga~g~vG~~ai~~ak~-~G~~vi~~~~~~~~~~~~~~~g~~~~v~  240 (398)
T TIGR01751       162 WEEAACPGLTGATAYRQLVGWNPATVKPGDNVLIWGAAGGLGSYATQLARA-GGGNPVAVVSSPEKAEYCRELGAEAVID  240 (398)
T ss_pred             HHHHhhccchHHHHHHHHhhhhccCCCCCCEEEEEcCCcHHHHHHHHHHHH-cCCeEEEEcCCHHHHHHHHHcCCCEEec
Confidence            99999999999999999853   6789999999999889999999999998 5999988888999999999999999998


Q ss_pred             CCCCc----------------------cc----cC--CCCccEEEecCc--cHHHHHHhcccCCeEEEEcCCCCC-CceE
Q 016265          285 YTKDN----------------------FE----DL--PEKFDVVYDAIG--QCDRAVKAIKEGGTVVALTGAVTP-PGFR  333 (392)
Q Consensus       285 ~~~~~----------------------~~----~~--~~~~D~vid~~G--~~~~~~~~l~~~G~iv~~g~~~~~-~~~~  333 (392)
                      +++.+                      +.    +.  .+++|++|||+|  .+..++++++++|+++.+|..... ..+.
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~d~vld~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~  320 (398)
T TIGR01751       241 RNDFGHWGRLPDLNTQAPKEWTKSFKRFGKRIRELTGGEDPDIVFEHPGRATFPTSVFVCRRGGMVVICGGTTGYNHDYD  320 (398)
T ss_pred             CCCcchhhccccccccccchhhhcchhHHHHHHHHcCCCCceEEEECCcHHHHHHHHHhhccCCEEEEEccccCCCCCcC
Confidence            75431                      00    01  247999999998  467899999999999999865311 1110


Q ss_pred             ----------E--EEeecHHHHHHHHHHHHCCCcccccCCCcccchhhHHHHHHHHHhCCCCeeEEEEeC
Q 016265          334 ----------F--VVTSNGEVLKKLNPYLESGKVKPIIDPKGPFPFSQVVEAFSYIETNKATGKVVIHPI  391 (392)
Q Consensus       334 ----------~--~~~~~~~~~~~~~~~l~~g~l~~~~~~t~~~~l~~~~~A~~~l~~~~~~gKvvl~~~  391 (392)
                                .  ......+.+++++++++++++.+.  +++.|++++++++|+.+.+++..||+|++++
T Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--~~~~~~l~~~~~a~~~~~~~~~~gkvvv~~~  388 (398)
T TIGR01751       321 NRYLWMRQKRIQGSHFANLREAWEANRLVAKGRIDPT--LSKVYPLEEIGQAHQDVHRNHHQGNVAVLVL  388 (398)
T ss_pred             HHHHhhcccEEEccccCcHHHHHHHHHHHHCCCcccc--eeeEEcHHHHHHHHHHHHcCCCCceEEEEeC
Confidence                      0  011122447889999999998865  5688999999999999999998999999875

The enzyme modelled by this alignment is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae.

>KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only]

Probab=100.00  E-value=7.8e-37  Score=292.47  Aligned_cols=296  Identities=40%  Similarity=0.579  Sum_probs=234.1

Q ss_pred             eeEEEEcccCCcceEEEeccccCCCCCCCeEEEEEeEEecChHhHHhhcCCCCCCC--CCCCCcCCCceeEE---EEEeC
Q 016265           84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATD--SPLPTVPGYDVAGV---VVKVG  158 (392)
Q Consensus        84 mka~v~~~~~~~~~l~~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~--~~~p~v~G~e~~G~---V~~vG  158 (392)
                      ++.+.+..+.......+.++.++|.|.+++++|++.++++|+.|+.+..|.+....  ..+|.+.+.++.|+   +...|
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~iP~~~~~~~~i~~~a~a~NpiD~~~~~g~~~~~~~~~~~p~ii~~~g~~~~~~~~~~g   84 (347)
T KOG1198|consen    5 IRRVSLVSPPGGGEVLFSEEVPIPEPEDGEVLIKVVAVALNPIDLKIRNGYYSPIPLGREFPGIIGRDGSGVVGAVESVG   84 (347)
T ss_pred             cceEEEeccCCCcceEEeecccCCCCCCCceEEEEEEeccChHHHHHHccCcCCCCCccCCCCccccccCCceeEEeccc
Confidence            34444433333322344448999999999999999999999999999999875432  25675555555444   44445


Q ss_pred             -CCCCCCCCCCEEEecccccccCCCCCCCcceeEEEecCCceeeCCCCCCHHhHhccchhHHHHHHHHHh-c------CC
Q 016265          159 -TQVKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLER-T------GF  230 (392)
Q Consensus       159 -~~v~~~~vGdrV~~~~~~~~~~~~~~~G~~a~~~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~al~~-~------~~  230 (392)
                       ..+..+..||++....         ..|+|+||.++|...++++|++++++++|++|++..|||.++.. .      +.
T Consensus        85 ~~~~~~~~~g~~~~~~~---------~~g~~aey~v~p~~~~~~~P~~l~~~~aa~~p~~~~tA~~al~~~~~~~~~~~~  155 (347)
T KOG1198|consen   85 DDVVGGWVHGDAVVAFL---------SSGGLAEYVVVPEKLLVKIPESLSFEEAAALPLAALTALSALFQLAPGKRSKKL  155 (347)
T ss_pred             cccccceEeeeEEeecc---------CCCceeeEEEcchhhccCCCCccChhhhhcCchHHHHHHHHHHhcccccccccc
Confidence             3345566777666654         37999999999999999999999999999999999999999954 5      69


Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCCccccC-----CCCccEEEecCc
Q 016265          231 SAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFEDL-----PEKFDVVYDAIG  305 (392)
Q Consensus       231 ~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~~~-----~~~~D~vid~~G  305 (392)
                      ++|++|||+||+|++|++++|+|++. ++.++++++++++.++++++|+|+++||+++++.+.     ..+||+||||+|
T Consensus       156 ~~g~~vLv~ggsggVG~~aiQlAk~~-~~~~v~t~~s~e~~~l~k~lGAd~vvdy~~~~~~e~~kk~~~~~~DvVlD~vg  234 (347)
T KOG1198|consen  156 SKGKSVLVLGGSGGVGTAAIQLAKHA-GAIKVVTACSKEKLELVKKLGADEVVDYKDENVVELIKKYTGKGVDVVLDCVG  234 (347)
T ss_pred             CCCCeEEEEeCCcHHHHHHHHHHHhc-CCcEEEEEcccchHHHHHHcCCcEeecCCCHHHHHHHHhhcCCCccEEEECCC
Confidence            99999999999999999999999994 788899999999999999999999999999877553     447999999998


Q ss_pred             c--HHHHHHhcccCCeEEEEcCCC-------CC-------------------CceEEEEeecHHHHHHHHHHHHCCCccc
Q 016265          306 Q--CDRAVKAIKEGGTVVALTGAV-------TP-------------------PGFRFVVTSNGEVLKKLNPYLESGKVKP  357 (392)
Q Consensus       306 ~--~~~~~~~l~~~G~iv~~g~~~-------~~-------------------~~~~~~~~~~~~~~~~~~~~l~~g~l~~  357 (392)
                      .  ....+.++..+|+...++...       ..                   ....+.+....+.++.+.++++.|++++
T Consensus       235 ~~~~~~~~~~l~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ie~gkikp  314 (347)
T KOG1198|consen  235 GSTLTKSLSCLLKGGGGAYIGLVGDELANYKLDDLWQSANGIKLYSLGLKGVNYRWLYFVPSAEYLKALVELIEKGKIKP  314 (347)
T ss_pred             CCccccchhhhccCCceEEEEeccccccccccccchhhhhhhhheeeeeeccceeeeeecCCHHHHHHHHHHHHcCcccC
Confidence            4  467778888887644443211       11                   0011223456788999999999999988


Q ss_pred             ccCCCcccchhhHHHHHHHHHhCCCCeeEEEEeC
Q 016265          358 IIDPKGPFPFSQVVEAFSYIETNKATGKVVIHPI  391 (392)
Q Consensus       358 ~~~~t~~~~l~~~~~A~~~l~~~~~~gKvvl~~~  391 (392)
                      .+.  +.||++++.+|++.+.++...||+++.+.
T Consensus       315 ~i~--~~~p~~~~~ea~~~~~~~~~~GK~vl~~~  346 (347)
T KOG1198|consen  315 VID--SVYPFSQAKEAFEKLEKSHATGKVVLEKD  346 (347)
T ss_pred             Ccc--eeeeHHHHHHHHHHHhhcCCcceEEEEec
Confidence            754  78999999999999999999999999875

>cd08244 MDR_enoyl_red Possible enoyl reductase

Probab=100.00  E-value=7.7e-36  Score=285.85  Aligned_cols=296  Identities=31%  Similarity=0.425  Sum_probs=245.6

Q ss_pred             eeEEEEcccCCcceEEEeccccCCCCCCCeEEEEEeEEecChHhHHhhcCCCCCC-CCCCCCcCCCceeEEEEEeCCCCC
Q 016265           84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKAT-DSPLPTVPGYDVAGVVVKVGTQVK  162 (392)
Q Consensus        84 mka~v~~~~~~~~~l~~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~-~~~~p~v~G~e~~G~V~~vG~~v~  162 (392)
                      |||+++++++....+++. +.+.|.+.++||+|++.++++|++|++...|..+.. ...+|.++|||++|+|+++|+++.
T Consensus         1 ~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~g~e~~G~v~~~G~~v~   79 (324)
T cd08244           1 MRAIRLHEFGPPEVLVPE-DVPDPVPGPGQVRIAVAAAGVHFVDTQLRSGWGPGPFPPELPYVPGGEVAGVVDAVGPGVD   79 (324)
T ss_pred             CeEEEEcCCCCccceEEe-ccCCCCCCCCEEEEEEEEEeCCHHHHHHhCCCCCCCCCCCCCcCCccceEEEEEEeCCCCC
Confidence            799999887776667777 777778899999999999999999999988864321 234578899999999999999999


Q ss_pred             CCCCCCEEEecccccccCCCCCCCcceeEEEecCCceeeCCCCCCHHhHhccchhHHHHHHHHHhcCCCCCCeEEEEcCC
Q 016265          163 EFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLERTGFSAGKSILVLNGS  242 (392)
Q Consensus       163 ~~~vGdrV~~~~~~~~~~~~~~~G~~a~~~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~al~~~~~~~g~~VlI~Ga~  242 (392)
                      .+++||+|++...       ...|+|++|+.++...++++|+++++++++.+++++.|||..++..++++|++|+|+|++
T Consensus        80 ~~~~Gd~V~~~~~-------~~~g~~~~~~~v~~~~~~~lp~~~~~~~a~~~~~~~~ta~~~~~~~~~~~~~~vlI~g~~  152 (324)
T cd08244          80 PAWLGRRVVAHTG-------RAGGGYAELAVADVDSLHPVPDGLDLEAAVAVVHDGRTALGLLDLATLTPGDVVLVTAAA  152 (324)
T ss_pred             CCCCCCEEEEccC-------CCCceeeEEEEEchHHeEeCCCCCCHHHHhhhcchHHHHHHHHHhcCCCCCCEEEEEcCC
Confidence            9999999998642       125899999999999999999999999999999999999766677889999999999999


Q ss_pred             CcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCCcccc----C--CCCccEEEecCcc--HHHHHHhc
Q 016265          243 GGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFED----L--PEKFDVVYDAIGQ--CDRAVKAI  314 (392)
Q Consensus       243 G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~~----~--~~~~D~vid~~G~--~~~~~~~l  314 (392)
                      |++|++++++|+. .|++++++++++++.+.++++|+++++++.+.++.+    .  .+++|+++||+|.  ...+++++
T Consensus       153 ~~~g~~~~~la~~-~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~~~g~~~~~~~~~~l  231 (324)
T cd08244         153 GGLGSLLVQLAKA-AGATVVGAAGGPAKTALVRALGADVAVDYTRPDWPDQVREALGGGGVTVVLDGVGGAIGRAALALL  231 (324)
T ss_pred             chHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHcCCCEEEecCCccHHHHHHHHcCCCCceEEEECCChHhHHHHHHHh
Confidence            9999999999999 599999999899999999999999999877654322    1  2479999999983  57899999


Q ss_pred             ccCCeEEEEcCCCCC-----------CceEEE---Ee-----ecHHHHHHHHHHHHCCCcccccCCCcccchhhHHHHHH
Q 016265          315 KEGGTVVALTGAVTP-----------PGFRFV---VT-----SNGEVLKKLNPYLESGKVKPIIDPKGPFPFSQVVEAFS  375 (392)
Q Consensus       315 ~~~G~iv~~g~~~~~-----------~~~~~~---~~-----~~~~~~~~~~~~l~~g~l~~~~~~t~~~~l~~~~~A~~  375 (392)
                      +++|+++.+|.....           ....+.   ..     ...+.+++++++++++.+.+.  +++.|+++++++|++
T Consensus       232 ~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--~~~~~~~~~~~~a~~  309 (324)
T cd08244         232 APGGRFLTYGWASGEWTALDEDDARRRGVTVVGLLGVQAERGGLRALEARALAEAAAGRLVPV--VGQTFPLERAAEAHA  309 (324)
T ss_pred             ccCcEEEEEecCCCCCCccCHHHHhhCCcEEEEeecccCCHHHHHHHHHHHHHHHHCCCccCc--cceEEeHHHHHHHHH
Confidence            999999999764311           011111   10     113567888999999998754  567899999999999


Q ss_pred             HHHhCCCCeeEEEEe
Q 016265          376 YIETNKATGKVVIHP  390 (392)
Q Consensus       376 ~l~~~~~~gKvvl~~  390 (392)
                      .+.++...||++++|
T Consensus       310 ~~~~~~~~~kvv~~~  324 (324)
T cd08244         310 ALEARSTVGKVLLLP  324 (324)
T ss_pred             HHHcCCCCceEEEeC
Confidence            999999899999865

Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr

>cd08262 Zn_ADH8 Alcohol dehydrogenases of the MDR family

Probab=100.00  E-value=2.9e-36  Score=291.39  Aligned_cols=298  Identities=23%  Similarity=0.297  Sum_probs=239.2

Q ss_pred             eeEEEEcccCCcceEEEeccccCCCCCCCeEEEEEeEEecChHhHHhhcCCCC---------CCCCCCCCcCCCceeEEE
Q 016265           84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFK---------ATDSPLPTVPGYDVAGVV  154 (392)
Q Consensus        84 mka~v~~~~~~~~~l~~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~g~~~---------~~~~~~p~v~G~e~~G~V  154 (392)
                      |||+++..+    .++++ +.+.|+++++||+||+.++++|+.|++.+.|...         .....+|.++|||++|+|
T Consensus         1 m~a~~~~~~----~~~~~-~~~~p~~~~~~v~V~v~~~~~~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~e~~G~V   75 (341)
T cd08262           1 MRAAVFRDG----PLVVR-DVPDPEPGPGQVLVKVLACGICGSDLHATAHPEAMVDDAGGPSLMDLGADIVLGHEFCGEV   75 (341)
T ss_pred             CceEEEeCC----ceEEE-ecCCCCCCCCeEEEEEEEEEEcccchHHHcCCCcccccccccccccCCCCcccccceeEEE
Confidence            789998755    37888 8999999999999999999999999999887321         012235788999999999


Q ss_pred             EEeCCCCCC-CCCCCEEEecccccccCCC--------CCCCcceeEEEecCCceeeCCCCCCHHhHhccchhHHHHHHHH
Q 016265          155 VKVGTQVKE-FKEGDEVYGDINEKALEGP--------KQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGL  225 (392)
Q Consensus       155 ~~vG~~v~~-~~vGdrV~~~~~~~~~~~~--------~~~G~~a~~~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~al  225 (392)
                      +++|+++++ +++||+|++.....+..+.        ...|+|++|+.++.+.++++|+++++++++ ++.++.+||+++
T Consensus        76 ~~vG~~v~~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~lP~~~s~~~a~-~~~~~~~a~~~~  154 (341)
T cd08262          76 VDYGPGTERKLKVGTRVTSLPLLLCGQGASCGIGLSPEAPGGYAEYMLLSEALLLRVPDGLSMEDAA-LTEPLAVGLHAV  154 (341)
T ss_pred             EEeCCCCcCCCCCCCEEEecCCcCCCCChhhhCCCCcCCCCceeeeEEechHHeEECCCCCCHHHhh-hhhhHHHHHHHH
Confidence            999999987 9999999986432111110        136899999999999999999999999877 667888999998


Q ss_pred             HhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEE-EeCCcccHHHHHhcCCcEEEeCCCCccc-------c--CCC
Q 016265          226 ERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVA-ATSSTRNLEFLKSLGADLAIDYTKDNFE-------D--LPE  295 (392)
Q Consensus       226 ~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~-~~~~~~~~~~~~~~G~~~vi~~~~~~~~-------~--~~~  295 (392)
                      ..+++++|++|+|+| +|++|.+++|+|+.+ |+++++ ++.++++.++++++|++++++++..+..       .  ..+
T Consensus       155 ~~~~~~~g~~VlI~g-~g~vg~~~~~la~~~-G~~~v~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~  232 (341)
T cd08262         155 RRARLTPGEVALVIG-CGPIGLAVIAALKAR-GVGPIVASDFSPERRALALAMGADIVVDPAADSPFAAWAAELARAGGP  232 (341)
T ss_pred             HhcCCCCCCEEEEEC-CCHHHHHHHHHHHHc-CCcEEEEECCCHHHHHHHHHcCCcEEEcCCCcCHHHHHHHHHHHhCCC
Confidence            888999999999997 799999999999995 987554 4568889999999999999987654221       1  135


Q ss_pred             CccEEEecCcc---HHHHHHhcccCCeEEEEcCCCCC----------CceE--EEEeecHHHHHHHHHHHHCCCcccccC
Q 016265          296 KFDVVYDAIGQ---CDRAVKAIKEGGTVVALTGAVTP----------PGFR--FVVTSNGEVLKKLNPYLESGKVKPIID  360 (392)
Q Consensus       296 ~~D~vid~~G~---~~~~~~~l~~~G~iv~~g~~~~~----------~~~~--~~~~~~~~~~~~~~~~l~~g~l~~~~~  360 (392)
                      ++|++||++|.   +..++++++++|+++.+|.....          ..+.  .......+.+.++++++++|.+.+...
T Consensus       233 ~~d~vid~~g~~~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~i~~~~~  312 (341)
T cd08262         233 KPAVIFECVGAPGLIQQIIEGAPPGGRIVVVGVCMESDNIEPALAIRKELTLQFSLGYTPEEFADALDALAEGKVDVAPM  312 (341)
T ss_pred             CCCEEEECCCCHHHHHHHHHHhccCCEEEEECCCCCCCccCHHHHhhcceEEEEEecccHHHHHHHHHHHHcCCCChHHh
Confidence            79999999874   47889999999999999754311          1112  222334567889999999999986544


Q ss_pred             CCcccchhhHHHHHHHHHhCCCCeeEEEE
Q 016265          361 PKGPFPFSQVVEAFSYIETNKATGKVVIH  389 (392)
Q Consensus       361 ~t~~~~l~~~~~A~~~l~~~~~~gKvvl~  389 (392)
                      +++.|+++++++|++.+.+++..||+|++
T Consensus       313 i~~~~~l~~~~~a~~~~~~~~~~~kvvv~  341 (341)
T cd08262         313 VTGTVGLDGVPDAFEALRDPEHHCKILVD  341 (341)
T ss_pred             eEEEeeHHHHHHHHHHHhcCCCceEEEeC
Confidence            56889999999999999999988999874

The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i

>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family

Probab=100.00  E-value=2.3e-36  Score=293.37  Aligned_cols=298  Identities=20%  Similarity=0.289  Sum_probs=237.1

Q ss_pred             eeEEEEcccCCcceEEEeccccCCCCCCCeEEEEEeEEecChHhHHhhcCCCCC-------CCCCCCCcCCCceeEEEEE
Q 016265           84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKA-------TDSPLPTVPGYDVAGVVVK  156 (392)
Q Consensus        84 mka~v~~~~~~~~~l~~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~-------~~~~~p~v~G~e~~G~V~~  156 (392)
                      |||+++++++.   ++++ +.+.|++.++||+||+.++++|+.|++.+.|....       ....+|.++|||++|+|++
T Consensus         1 mka~~~~~~~~---~~~~-~~~~p~~~~~~v~V~v~a~~i~~~d~~~~~g~~~~~~~~~~~~~~~~p~~~g~e~~G~v~~   76 (350)
T cd08256           1 MRAVVCHGPQD---YRLE-EVPVPRPGPGEILVKVEACGICAGDIKCYHGAPSFWGDENQPPYVKPPMIPGHEFVGRVVE   76 (350)
T ss_pred             CeeEEEecCCc---eEEE-ECCCCCCCCCeEEEEEEEEEEcccchhhhcCCCccccccccCccCCCCcccCcceeEEEEE
Confidence            79999987765   7888 89999999999999999999999999988886311       0114577899999999999


Q ss_pred             eCCCCC--CCCCCCEEEeccccccc------------------CCC--CCCCcceeEEEecCC-ceeeCCCCCCHHhHhc
Q 016265          157 VGTQVK--EFKEGDEVYGDINEKAL------------------EGP--KQFGSLAEYTAVEER-LLAPKPKNLDFVQAAG  213 (392)
Q Consensus       157 vG~~v~--~~~vGdrV~~~~~~~~~------------------~~~--~~~G~~a~~~~v~~~-~~~~iP~~l~~~~aa~  213 (392)
                      +|++|+  +|++||+|++.....+.                  .|.  ...|+|++|+.++++ .++++|+++++++++.
T Consensus        77 vG~~v~~~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~lP~~~~~~~aa~  156 (350)
T cd08256          77 LGEGAEERGVKVGDRVISEQIVPCWNCRFCNRGQYWMCQKHDLYGFQNNVNGGMAEYMRFPKEAIVHKVPDDIPPEDAIL  156 (350)
T ss_pred             eCCCcccCCCCCCCEEEECCcCCCCCChHHhCcCcccCcCccceeeccCCCCcceeeEEcccccceEECCCCCCHHHHhh
Confidence            999999  99999999873211000                  001  136899999999988 5789999999999998


Q ss_pred             cchhHHHHHHHHHhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEE-EEeCCcccHHHHHhcCCcEEEeCCCCcccc
Q 016265          214 LPLAIETAYEGLERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRV-AATSSTRNLEFLKSLGADLAIDYTKDNFED  292 (392)
Q Consensus       214 l~~~~~ta~~al~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv-~~~~~~~~~~~~~~~G~~~vi~~~~~~~~~  292 (392)
                      + .++.|+|++++.+++++|++|+|. |+|++|++++++|+.+ |++++ +++++++|.++++++|+++++++...++.+
T Consensus       157 ~-~~~~ta~~a~~~~~~~~g~~vlI~-g~g~vG~~~~~~a~~~-G~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~  233 (350)
T cd08256         157 I-EPLACALHAVDRANIKFDDVVVLA-GAGPLGLGMIGAARLK-NPKKLIVLDLKDERLALARKFGADVVLNPPEVDVVE  233 (350)
T ss_pred             h-hHHHHHHHHHHhcCCCCCCEEEEE-CCCHHHHHHHHHHHHc-CCcEEEEEcCCHHHHHHHHHcCCcEEecCCCcCHHH
Confidence            8 888899999988899999999995 5899999999999995 87654 556788889999999999999887654322


Q ss_pred             ----C--CCCccEEEecCcc---HHHHHHhcccCCeEEEEcCCCCCCceEE--E---------E-eecHHHHHHHHHHHH
Q 016265          293 ----L--PEKFDVVYDAIGQ---CDRAVKAIKEGGTVVALTGAVTPPGFRF--V---------V-TSNGEVLKKLNPYLE  351 (392)
Q Consensus       293 ----~--~~~~D~vid~~G~---~~~~~~~l~~~G~iv~~g~~~~~~~~~~--~---------~-~~~~~~~~~~~~~l~  351 (392)
                          .  ..++|++||++|.   +..++++++++|+++.+|.......+.+  .         . ......+.+++++++
T Consensus       234 ~~~~~~~~~~vdvvld~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  313 (350)
T cd08256         234 KIKELTGGYGCDIYIEATGHPSAVEQGLNMIRKLGRFVEFSVFGDPVTVDWSIIGDRKELDVLGSHLGPYCYPIAIDLIA  313 (350)
T ss_pred             HHHHHhCCCCCCEEEECCCChHHHHHHHHHhhcCCEEEEEccCCCCCccChhHhhcccccEEEEeccCchhHHHHHHHHH
Confidence                1  3469999999983   5789999999999999975432211110  0         0 112346788999999


Q ss_pred             CCCcccccCCCcccchhhHHHHHHHHHhCCCCeeEEE
Q 016265          352 SGKVKPIIDPKGPFPFSQVVEAFSYIETNKATGKVVI  388 (392)
Q Consensus       352 ~g~l~~~~~~t~~~~l~~~~~A~~~l~~~~~~gKvvl  388 (392)
                      +|.+++...+++.|+++++++|++.+++++..+|+++
T Consensus       314 ~g~l~~~~~~~~~~~l~~~~~a~~~~~~~~~~~kvv~  350 (350)
T cd08256         314 SGRLPTDGIVTHQFPLEDFEEAFELMARGDDSIKVVL  350 (350)
T ss_pred             cCCCChhHheEEEeEHHHHHHHHHHHHhCCCceEEeC
Confidence            9999875335688999999999999999988889874

This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,

>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=100.00  E-value=1.7e-35  Score=281.32  Aligned_cols=284  Identities=31%  Similarity=0.384  Sum_probs=237.0

Q ss_pred             eeEEEEcccCCcceEEEeccccCCCCCCCeEEEEEeEEecChHhHHhhcCCCCCCCCCCCCcCCCceeEEEEEeCCCCCC
Q 016265           84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKE  163 (392)
Q Consensus        84 mka~v~~~~~~~~~l~~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~~~p~v~G~e~~G~V~~vG~~v~~  163 (392)
                      ||++++.+.+ +..++++ +.+.|.++++||+||+.++++|+.|++...+.      ..|.++|||++|+|+++|+++..
T Consensus         1 ~~~~~~~~~~-~~~~~~~-~~~~p~~~~~ev~v~v~~~~i~~~d~~~~~~~------~~~~~~g~e~~G~v~~~G~~v~~   72 (305)
T cd08270           1 MRALVVDPDA-PLRLRLG-EVPDPQPAPHEALVRVAAISLNRGELKFAAER------PDGAVPGWDAAGVVERAAADGSG   72 (305)
T ss_pred             CeEEEEccCC-CceeEEE-ecCCCCCCCCEEEEEEEEEecCHHHHHhhccC------CCCCcccceeEEEEEEeCCCCCC
Confidence            6899998765 5668888 88999999999999999999999999876522      23578999999999999999999


Q ss_pred             CCCCCEEEecccccccCCCCCCCcceeEEEecCCceeeCCCCCCHHhHhccchhHHHHHHHHHhcCCCCCCeEEEEcCCC
Q 016265          164 FKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLERTGFSAGKSILVLNGSG  243 (392)
Q Consensus       164 ~~vGdrV~~~~~~~~~~~~~~~G~~a~~~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~al~~~~~~~g~~VlI~Ga~G  243 (392)
                      |++||+|++..         ..|+|++|+.++.+.++++|+++++++++.+++.+.|||+++......+|++|+|+|+.|
T Consensus        73 ~~~Gd~V~~~~---------~~g~~~~~~~v~~~~~~~ip~~~~~~~a~~~~~~~~ta~~~~~~~~~~~~~~vli~g~~~  143 (305)
T cd08270          73 PAVGARVVGLG---------AMGAWAELVAVPTGWLAVLPDGVSFAQAATLPVAGVTALRALRRGGPLLGRRVLVTGASG  143 (305)
T ss_pred             CCCCCEEEEec---------CCcceeeEEEEchHHeEECCCCCCHHHHHHhHhHHHHHHHHHHHhCCCCCCEEEEECCCc
Confidence            99999999864         258999999999999999999999999999999999999999766555799999999889


Q ss_pred             cHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCCccccCCCCccEEEecCc--cHHHHHHhcccCCeEE
Q 016265          244 GVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFEDLPEKFDVVYDAIG--QCDRAVKAIKEGGTVV  321 (392)
Q Consensus       244 ~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~~~~~~~D~vid~~G--~~~~~~~~l~~~G~iv  321 (392)
                      ++|++++++|+. .|++++.+++++++++.++++|++.+++... .+  ..+++|+++|++|  .+..++++++++|+++
T Consensus       144 ~~g~~~~~~a~~-~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~-~~--~~~~~d~vl~~~g~~~~~~~~~~l~~~G~~v  219 (305)
T cd08270         144 GVGRFAVQLAAL-AGAHVVAVVGSPARAEGLRELGAAEVVVGGS-EL--SGAPVDLVVDSVGGPQLARALELLAPGGTVV  219 (305)
T ss_pred             HHHHHHHHHHHH-cCCEEEEEeCCHHHHHHHHHcCCcEEEeccc-cc--cCCCceEEEECCCcHHHHHHHHHhcCCCEEE
Confidence            999999999999 5999999999999999999999877664332 11  1247999999998  4688999999999999


Q ss_pred             EEcCCCCC-C------------ceEEEE---e---ecHHHHHHHHHHHHCCCcccccCCCcccchhhHHHHHHHHHhCCC
Q 016265          322 ALTGAVTP-P------------GFRFVV---T---SNGEVLKKLNPYLESGKVKPIIDPKGPFPFSQVVEAFSYIETNKA  382 (392)
Q Consensus       322 ~~g~~~~~-~------------~~~~~~---~---~~~~~~~~~~~~l~~g~l~~~~~~t~~~~l~~~~~A~~~l~~~~~  382 (392)
                      .+|..... .            ...+..   .   .....++.++++++++++++.  +.+.|+++++++|++.+.++..
T Consensus       220 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~--~~~~~~~~~~~~a~~~~~~~~~  297 (305)
T cd08270         220 SVGSSSGEPAVFNPAAFVGGGGGRRLYTFFLYDGEPLAADLARLLGLVAAGRLDPR--IGWRGSWTEIDEAAEALLARRF  297 (305)
T ss_pred             EEeccCCCcccccHHHHhcccccceEEEEEccCHHHHHHHHHHHHHHHHCCCccce--eccEEcHHHHHHHHHHHHcCCC
Confidence            99754310 0            111111   1   113567889999999999865  5678999999999999999988


Q ss_pred             CeeEEEEe
Q 016265          383 TGKVVIHP  390 (392)
Q Consensus       383 ~gKvvl~~  390 (392)
                      .||+|+.+
T Consensus       298 ~gkvvi~~  305 (305)
T cd08270         298 RGKAVLDV  305 (305)
T ss_pred             CceEEEeC
Confidence            89999864

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>PTZ00354 alcohol dehydrogenase; Provisional

Probab=100.00  E-value=1.5e-35  Score=284.97  Aligned_cols=295  Identities=33%  Similarity=0.536  Sum_probs=244.5

Q ss_pred             ceeEEEEcccCCcceEEEeccccCCCCCCCeEEEEEeEEecChHhHHhhcCCCCCCCCCCCCcCCCceeEEEEEeCCCCC
Q 016265           83 EMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVK  162 (392)
Q Consensus        83 ~mka~v~~~~~~~~~l~~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~~~p~v~G~e~~G~V~~vG~~v~  162 (392)
                      ||||+++.+++....+++. +.+.|.+.++||+||+.++++|+.|+....|.++. ....|.++|||++|+|+++|+++.
T Consensus         1 ~m~a~~~~~~~~~~~~~~~-~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~-~~~~~~~~g~e~~G~v~~vG~~v~   78 (334)
T PTZ00354          1 MMRAVTLKGFGGVDVLKIG-ESPKPAPKRNDVLIKVSAAGVNRADTLQRQGKYPP-PPGSSEILGLEVAGYVEDVGSDVK   78 (334)
T ss_pred             CcEEEEEEecCCCcceEEE-eCCCCCCCCCEEEEEEEEEecCHHHHHHhCCCCCC-CCCCCcccceeeEEEEEEeCCCCC
Confidence            6999999988876667787 77888899999999999999999999998886542 233467899999999999999999


Q ss_pred             CCCCCCEEEecccccccCCCCCCCcceeEEEecCCceeeCCCCCCHHhHhccchhHHHHHHHHHh-cCCCCCCeEEEEcC
Q 016265          163 EFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLER-TGFSAGKSILVLNG  241 (392)
Q Consensus       163 ~~~vGdrV~~~~~~~~~~~~~~~G~~a~~~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~al~~-~~~~~g~~VlI~Ga  241 (392)
                      ++++||+|++...         +|+|++|++++.+.++++|+++++++++.+++++.|||+++.. ..+++|++|+|+|+
T Consensus        79 ~~~~Gd~V~~~~~---------~g~~~~~~~v~~~~~~~ip~~~~~~~a~~~~~~~~ta~~~l~~~~~~~~~~~vlI~ga  149 (334)
T PTZ00354         79 RFKEGDRVMALLP---------GGGYAEYAVAHKGHVMHIPQGYTFEEAAAIPEAFLTAWQLLKKHGDVKKGQSVLIHAG  149 (334)
T ss_pred             CCCCCCEEEEecC---------CCceeeEEEecHHHcEeCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcC
Confidence            9999999998632         4899999999999999999999999999999999999999854 78999999999999


Q ss_pred             CCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCCc-ccc----C--CCCccEEEecCc--cHHHHHH
Q 016265          242 SGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDN-FED----L--PEKFDVVYDAIG--QCDRAVK  312 (392)
Q Consensus       242 ~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~-~~~----~--~~~~D~vid~~G--~~~~~~~  312 (392)
                      +|++|++++++|+.+ |+++++++++++++++++++|+++++++...+ +.+    .  .+++|++||++|  .+..+++
T Consensus       150 ~g~~g~~~~~~a~~~-g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~  228 (334)
T PTZ00354        150 ASGVGTAAAQLAEKY-GAATIITTSSEEKVDFCKKLAAIILIRYPDEEGFAPKVKKLTGEKGVNLVLDCVGGSYLSETAE  228 (334)
T ss_pred             CchHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHcCCcEEEecCChhHHHHHHHHHhCCCCceEEEECCchHHHHHHHH
Confidence            999999999999995 99988888999999999999999999876543 221    1  357999999988  4688999


Q ss_pred             hcccCCeEEEEcCCCCC----Cce--------EEEE---e--ec-------HHHHHHHHHHHHCCCcccccCCCcccchh
Q 016265          313 AIKEGGTVVALTGAVTP----PGF--------RFVV---T--SN-------GEVLKKLNPYLESGKVKPIIDPKGPFPFS  368 (392)
Q Consensus       313 ~l~~~G~iv~~g~~~~~----~~~--------~~~~---~--~~-------~~~~~~~~~~l~~g~l~~~~~~t~~~~l~  368 (392)
                      +++++|+++.++.....    ..+        .+..   .  ..       ...+++++++++++.+.+.  +.+.|+++
T Consensus       229 ~l~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~  306 (334)
T PTZ00354        229 VLAVDGKWIVYGFMGGAKVEKFNLLPLLRKRASIIFSTLRSRSDEYKADLVASFEREVLPYMEEGEIKPI--VDRTYPLE  306 (334)
T ss_pred             HhccCCeEEEEecCCCCcccccCHHHHHhhCCEEEeeeccccchhhhHHHHHHHHHHHHHHHHCCCccCc--cccEEcHH
Confidence            99999999998753211    110        1110   0  00       1335778889999998764  56789999


Q ss_pred             hHHHHHHHHHhCCCCeeEEEEeC
Q 016265          369 QVVEAFSYIETNKATGKVVIHPI  391 (392)
Q Consensus       369 ~~~~A~~~l~~~~~~gKvvl~~~  391 (392)
                      +++++++.+.+++..||+|+.+.
T Consensus       307 ~~~~~~~~~~~~~~~~kvvv~~~  329 (334)
T PTZ00354        307 EVAEAHTFLEQNKNIGKVVLTVN  329 (334)
T ss_pred             HHHHHHHHHHhCCCCceEEEecC
Confidence            99999999998888899998653

>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD)

Probab=100.00  E-value=8.2e-36  Score=288.03  Aligned_cols=295  Identities=26%  Similarity=0.358  Sum_probs=243.6

Q ss_pred             eEEEEcccCCcceEEEeccccCCCCCCCeEEEEEeEEecChHhHHhhcCCCCCCCCCCCCcCCCceeEEEEEeCCCCCCC
Q 016265           85 KAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKEF  164 (392)
Q Consensus        85 ka~v~~~~~~~~~l~~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~~~p~v~G~e~~G~V~~vG~~v~~~  164 (392)
                      |+|+.++.+.  .++++ +.+.|++.+|||+||+.++++|++|++.+.|.+.  ...+|.++|||++|+|+++|+++++|
T Consensus         1 ~~~~~~~~~~--~~~~~-~~~~p~~~~~evlirv~a~~i~~~d~~~~~g~~~--~~~~p~~~g~e~~G~V~~vG~~v~~~   75 (337)
T cd05283           1 KGYAARDASG--KLEPF-TFERRPLGPDDVDIKITYCGVCHSDLHTLRNEWG--PTKYPLVPGHEIVGIVVAVGSKVTKF   75 (337)
T ss_pred             CceEEecCCC--CceEE-eccCCCCCCCeEEEEEEEecccchHHHHhcCCcC--CCCCCcccCcceeeEEEEECCCCccc
Confidence            5677777764  48888 8999999999999999999999999999988763  23468899999999999999999999


Q ss_pred             CCCCEEEecc-c----c--ccc-------------------CCCCCCCcceeEEEecCCceeeCCCCCCHHhHhccchhH
Q 016265          165 KEGDEVYGDI-N----E--KAL-------------------EGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAI  218 (392)
Q Consensus       165 ~vGdrV~~~~-~----~--~~~-------------------~~~~~~G~~a~~~~v~~~~~~~iP~~l~~~~aa~l~~~~  218 (392)
                      ++||+|+..+ .    .  .+.                   .+....|+|++|+.++.+.++++|+++++++++.+++.+
T Consensus        76 ~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~lp~~~~~~~aa~l~~~~  155 (337)
T cd05283          76 KVGDRVGVGCQVDSCGTCEQCKSGEEQYCPKGVVTYNGKYPDGTITQGGYADHIVVDERFVFKIPEGLDSAAAAPLLCAG  155 (337)
T ss_pred             CCCCEEEEecCCCCCCCCccccCCchhcCcchhhcccccccCCCcCCCcceeEEEechhheEECCCCCCHHHhhhhhhHH
Confidence            9999997321 0    0  000                   012336899999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCCcc-ccCCCCc
Q 016265          219 ETAYEGLERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNF-EDLPEKF  297 (392)
Q Consensus       219 ~ta~~al~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~-~~~~~~~  297 (392)
                      .|||++++...+++|++|+|.| .|++|++++++|+. .|+++++++++++++++++++|++.+++....++ ....+++
T Consensus       156 ~ta~~~~~~~~~~~g~~vlV~g-~g~vG~~~~~~a~~-~G~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~~~  233 (337)
T cd05283         156 ITVYSPLKRNGVGPGKRVGVVG-IGGLGHLAVKFAKA-LGAEVTAFSRSPSKKEDALKLGADEFIATKDPEAMKKAAGSL  233 (337)
T ss_pred             HHHHHHHHhcCCCCCCEEEEEC-CcHHHHHHHHHHHH-cCCeEEEEcCCHHHHHHHHHcCCcEEecCcchhhhhhccCCc
Confidence            9999999888899999999976 89999999999999 5999989989989999999999999998765443 2335689


Q ss_pred             cEEEecCcc---HHHHHHhcccCCeEEEEcCCCCCCc----------eEE--EEeecHHHHHHHHHHHHCCCcccccCCC
Q 016265          298 DVVYDAIGQ---CDRAVKAIKEGGTVVALTGAVTPPG----------FRF--VVTSNGEVLKKLNPYLESGKVKPIIDPK  362 (392)
Q Consensus       298 D~vid~~G~---~~~~~~~l~~~G~iv~~g~~~~~~~----------~~~--~~~~~~~~~~~~~~~l~~g~l~~~~~~t  362 (392)
                      |++|||+|.   ...++++++++|+++.+|.......          ..+  ........++++++++++|++++.   .
T Consensus       234 d~v~~~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~---~  310 (337)
T cd05283         234 DLIIDTVSASHDLDPYLSLLKPGGTLVLVGAPEEPLPVPPFPLIFGRKSVAGSLIGGRKETQEMLDFAAEHGIKPW---V  310 (337)
T ss_pred             eEEEECCCCcchHHHHHHHhcCCCEEEEEeccCCCCccCHHHHhcCceEEEEecccCHHHHHHHHHHHHhCCCccc---e
Confidence            999999982   6889999999999999986532211          111  112345778999999999998764   3


Q ss_pred             cccchhhHHHHHHHHHhCCCCeeEEEE
Q 016265          363 GPFPFSQVVEAFSYIETNKATGKVVIH  389 (392)
Q Consensus       363 ~~~~l~~~~~A~~~l~~~~~~gKvvl~  389 (392)
                      +.|+++++++||+.+.+++..||+|++
T Consensus       311 ~~~~~~~~~~a~~~~~~~~~~~k~v~~  337 (337)
T cd05283         311 EVIPMDGINEALERLEKGDVRYRFVLD  337 (337)
T ss_pred             EEEEHHHHHHHHHHHHcCCCcceEeeC
Confidence            689999999999999999999999874

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic

>cd08290 ETR 2-enoyl thioester reductase (ETR)

Probab=100.00  E-value=9.4e-36  Score=287.75  Aligned_cols=295  Identities=28%  Similarity=0.376  Sum_probs=240.8

Q ss_pred             eeEEEEcccCCc-ceEEEeccccCCCCCC-CeEEEEEeEEecChHhHHhhcCCCCCCCC---CCCCcCCCceeEEEEEeC
Q 016265           84 MKAWLYGEYGGV-DVLKFDEKVTVPQVKE-DQVLIKVVAAALNPVDGKRRQGKFKATDS---PLPTVPGYDVAGVVVKVG  158 (392)
Q Consensus        84 mka~v~~~~~~~-~~l~~~~~~~~p~~~~-~eVlV~v~~~~i~~~D~~~~~g~~~~~~~---~~p~v~G~e~~G~V~~vG  158 (392)
                      |||+++.+.+.+ +.++++ +.+.|.|.+ +||+||+.++|+|++|++.+.|.++....   .+|.++|||++|+|+++|
T Consensus         1 ~~a~~~~~~~~~~~~~~~~-~~~~p~~~~~~~v~v~v~~~gi~~~d~~~~~g~~~~~~~~~~~~~~~~g~e~~G~V~~vG   79 (341)
T cd08290           1 AKALVYTEHGEPKEVLQLE-SYEIPPPGPPNEVLVKMLAAPINPADINQIQGVYPIKPPTTPEPPAVGGNEGVGEVVKVG   79 (341)
T ss_pred             CceEEEccCCCchhheEEe-ecCCCCCCCCCEEEEEEEecCCCHHHHHHhcCcCCCCCcccCCCCCCCCcceEEEEEEeC
Confidence            799999988765 357888 889998888 99999999999999999998887642211   157789999999999999


Q ss_pred             CCCCCCCCCCEEEecccccccCCCCCCCcceeEEEecCCceeeCCCCCCHHhHhccchhHHHHHHHHHh-cCCCCCCeEE
Q 016265          159 TQVKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLER-TGFSAGKSIL  237 (392)
Q Consensus       159 ~~v~~~~vGdrV~~~~~~~~~~~~~~~G~~a~~~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~al~~-~~~~~g~~Vl  237 (392)
                      +++..|++||+|++...        ..|+|++|+.++.+.++++|+++++++++.+++++.|||+++.. ..+++|++||
T Consensus        80 ~~v~~~~~Gd~V~~~~~--------~~g~~~~~~~v~~~~~~~lp~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vl  151 (341)
T cd08290          80 SGVKSLKPGDWVIPLRP--------GLGTWRTHAVVPADDLIKVPNDVDPEQAATLSVNPCTAYRLLEDFVKLQPGDWVI  151 (341)
T ss_pred             CCCCCCCCCCEEEecCC--------CCccchheEeccHHHeEeCCCCCCHHHHHHhhccHHHHHHHHHhhcccCCCCEEE
Confidence            99999999999998642        25899999999999999999999999999999999999999954 6789999999


Q ss_pred             EEcCCCcHHHHHHHHHHHhcCCeEEEEeCCc----ccHHHHHhcCCcEEEeCCCC---cccc----C-CCCccEEEecCc
Q 016265          238 VLNGSGGVGSLVIQLAKQVFGASRVAATSST----RNLEFLKSLGADLAIDYTKD---NFED----L-PEKFDVVYDAIG  305 (392)
Q Consensus       238 I~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~----~~~~~~~~~G~~~vi~~~~~---~~~~----~-~~~~D~vid~~G  305 (392)
                      |+|++|++|++++|+|++ .|++++++++++    ++++.++++|+++++++.+.   .+.+    . .+++|++|||+|
T Consensus       152 I~g~~g~vg~~~~~~a~~-~g~~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~d~vld~~g  230 (341)
T cd08290         152 QNGANSAVGQAVIQLAKL-LGIKTINVVRDRPDLEELKERLKALGADHVLTEEELRSLLATELLKSAPGGRPKLALNCVG  230 (341)
T ss_pred             EccchhHHHHHHHHHHHH-cCCeEEEEEcCCCcchhHHHHHHhcCCCEEEeCcccccccHHHHHHHHcCCCceEEEECcC
Confidence            999899999999999999 599998888765    66888899999999988764   3321    1 227999999998


Q ss_pred             c--HHHHHHhcccCCeEEEEcCCCC-C----------CceEEEEe--------ecH----HHHHHHHHHHHCCCcccccC
Q 016265          306 Q--CDRAVKAIKEGGTVVALTGAVT-P----------PGFRFVVT--------SNG----EVLKKLNPYLESGKVKPIID  360 (392)
Q Consensus       306 ~--~~~~~~~l~~~G~iv~~g~~~~-~----------~~~~~~~~--------~~~----~~~~~~~~~l~~g~l~~~~~  360 (392)
                      .  ...++++++++|+++.++.... +          ....+...        ..+    ..+.++++++.+|.+++.. 
T Consensus       231 ~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-  309 (341)
T cd08290         231 GKSATELARLLSPGGTMVTYGGMSGQPVTVPTSLLIFKDITLRGFWLTRWLKRANPEEKEDMLEELAELIREGKLKAPP-  309 (341)
T ss_pred             cHhHHHHHHHhCCCCEEEEEeccCCCCcccCHHHHhhCCceEEEEecHHHHhhcCHHHHHHHHHHHHHHHHcCCccCCc-
Confidence            3  5678999999999999975321 1          11111111        111    2477888999999988652 


Q ss_pred             CCccc---chhhHHHHHHHHHhCCCCeeEEEEe
Q 016265          361 PKGPF---PFSQVVEAFSYIETNKATGKVVIHP  390 (392)
Q Consensus       361 ~t~~~---~l~~~~~A~~~l~~~~~~gKvvl~~  390 (392)
                       ...+   +++++++|++.+.++...||+|+++
T Consensus       310 -~~~~~~~~~~~~~~a~~~~~~~~~~~k~v~~~  341 (341)
T cd08290         310 -VEKVTDDPLEEFKDALANALKGGGGGKQVLVM  341 (341)
T ss_pred             -ccccccCCHHHHHHHHHHHhhcCCCCeEEEeC
Confidence             3455   9999999999999988889999874

2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann f

>cd05278 FDH_like Formaldehyde dehydrogenases

Probab=100.00  E-value=4.7e-36  Score=290.42  Aligned_cols=299  Identities=27%  Similarity=0.387  Sum_probs=243.0

Q ss_pred             eeEEEEcccCCcceEEEeccccCCCC-CCCeEEEEEeEEecChHhHHhhcCCCCCCCCCCCCcCCCceeEEEEEeCCCCC
Q 016265           84 MKAWLYGEYGGVDVLKFDEKVTVPQV-KEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVK  162 (392)
Q Consensus        84 mka~v~~~~~~~~~l~~~~~~~~p~~-~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~~~p~v~G~e~~G~V~~vG~~v~  162 (392)
                      ||++++.+++.   +++. +.+.|.| .++||+||+.++++|++|++.+.|.++.  ..+|.++|||++|+|+++|++++
T Consensus         1 ~ka~~~~~~~~---~~~~-~~~~p~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~--~~~~~~~g~e~~G~V~~vG~~v~   74 (347)
T cd05278           1 MKALVYLGPGK---IGLE-EVPDPKIQGPHDAIVRVTATSICGSDLHIYRGGVPG--AKHGMILGHEFVGEVVEVGSDVK   74 (347)
T ss_pred             CceEEEecCCc---eEEE-EcCCCCCCCCCeEEEEEEEEEechhhHHHHcCCCCC--CCCCceeccceEEEEEEECCCcc
Confidence            68999987665   6777 8899999 9999999999999999999999887753  45688999999999999999999


Q ss_pred             CCCCCCEEEecccccc---------------------cCCCCCCCcceeEEEecCC--ceeeCCCCCCHHhHhccchhHH
Q 016265          163 EFKEGDEVYGDINEKA---------------------LEGPKQFGSLAEYTAVEER--LLAPKPKNLDFVQAAGLPLAIE  219 (392)
Q Consensus       163 ~~~vGdrV~~~~~~~~---------------------~~~~~~~G~~a~~~~v~~~--~~~~iP~~l~~~~aa~l~~~~~  219 (392)
                      ++++||+|++.....+                     ..+....|+|++|++++.+  .++++|+++++++++.+++++.
T Consensus        75 ~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~~lP~~~~~~~aa~l~~~~~  154 (347)
T cd05278          75 RLKPGDRVSVPCITFCGRCRFCRRGYHAHCENGLWGWKLGNRIDGGQAEYVRVPYADMNLAKIPDGLPDEDALMLSDILP  154 (347)
T ss_pred             ccCCCCEEEecCCCCCCCChhHhCcCcccCcCCCcccccccCCCCeeeEEEEecchhCeEEECCCCCCHHHHhhhcchhh
Confidence            9999999997421110                     0111236899999999987  8999999999999999999999


Q ss_pred             HHHHHHHhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCC-eEEEEeCCcccHHHHHhcCCcEEEeCCCCcccc----C-
Q 016265          220 TAYEGLERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGA-SRVAATSSTRNLEFLKSLGADLAIDYTKDNFED----L-  293 (392)
Q Consensus       220 ta~~al~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~-~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~~----~-  293 (392)
                      |||+++...++++|++|+|.| +|++|++++|+|+.+ |. .++++.+++++.++++++|++.++++++.++.+    . 
T Consensus       155 ta~~~~~~~~~~~~~~VlI~g-~g~vg~~~iqlak~~-g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~i~~~~  232 (347)
T cd05278         155 TGFHGAELAGIKPGSTVAVIG-AGPVGLCAVAGARLL-GAARIIAVDSNPERLDLAKEAGATDIINPKNGDIVEQILELT  232 (347)
T ss_pred             heeehhhhcCCCCCCEEEEEC-CCHHHHHHHHHHHHc-CCCEEEEEeCCHHHHHHHHHhCCcEEEcCCcchHHHHHHHHc
Confidence            999999778899999999976 799999999999984 86 677777788889999999999999887655432    1 


Q ss_pred             -CCCccEEEecCcc---HHHHHHhcccCCeEEEEcCCCCCC-----------ceEEEE--eecHHHHHHHHHHHHCCCcc
Q 016265          294 -PEKFDVVYDAIGQ---CDRAVKAIKEGGTVVALTGAVTPP-----------GFRFVV--TSNGEVLKKLNPYLESGKVK  356 (392)
Q Consensus       294 -~~~~D~vid~~G~---~~~~~~~l~~~G~iv~~g~~~~~~-----------~~~~~~--~~~~~~~~~~~~~l~~g~l~  356 (392)
                       .+++|++||++|.   +..++++++++|+++.+|......           ...+..  ......++++++++.+|.++
T Consensus       233 ~~~~~d~vld~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  312 (347)
T cd05278         233 GGRGVDCVIEAVGFEETFEQAVKVVRPGGTIANVGVYGKPDPLPLLGEWFGKNLTFKTGLVPVRARMPELLDLIEEGKID  312 (347)
T ss_pred             CCCCCcEEEEccCCHHHHHHHHHHhhcCCEEEEEcCCCCCcccCccchhhhceeEEEeeccCchhHHHHHHHHHHcCCCC
Confidence             2579999999873   588899999999999987443111           111111  11246788999999999998


Q ss_pred             cccCCCcccchhhHHHHHHHHHhCCC-CeeEEEEe
Q 016265          357 PIIDPKGPFPFSQVVEAFSYIETNKA-TGKVVIHP  390 (392)
Q Consensus       357 ~~~~~t~~~~l~~~~~A~~~l~~~~~-~gKvvl~~  390 (392)
                      +.......|+++++++|++.+..++. .+|+|+++
T Consensus       313 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~vv~~  347 (347)
T cd05278         313 PSKLITHRFPLDDILKAYRLFDNKPDGCIKVVIRP  347 (347)
T ss_pred             hhHcEEEEecHHHHHHHHHHHhcCCCCceEEEecC
Confidence            65334567999999999999988877 68998864

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall

>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional

Probab=100.00  E-value=1.3e-35  Score=286.33  Aligned_cols=297  Identities=26%  Similarity=0.340  Sum_probs=239.8

Q ss_pred             eeEEEEcccCCcceEEEeccccCCCCCCCeEEEEEeEEecChHhHHhhcCCCCCCCCCCCCcCCCceeEEEEEeCCCCCC
Q 016265           84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKE  163 (392)
Q Consensus        84 mka~v~~~~~~~~~l~~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~~~p~v~G~e~~G~V~~vG~~v~~  163 (392)
                      |||+++++++....  ++ +.+.|.++++||+||+.++++|++|++.+.|.++.   ..|.++|||++|+|+++|+++++
T Consensus         1 mka~~~~~~~~~~~--~~-~~~~p~~~~~evlv~v~~~~i~~~d~~~~~g~~~~---~~~~~~g~e~~G~V~~~G~~v~~   74 (338)
T PRK09422          1 MKAAVVNKDHTGDV--VV-EKTLRPLKHGEALVKMEYCGVCHTDLHVANGDFGD---KTGRILGHEGIGIVKEVGPGVTS   74 (338)
T ss_pred             CeEEEecCCCCCce--EE-EecCCCCCCCeEEEEEEEEeechhHHHHHcCCCCC---CCCccCCcccceEEEEECCCCcc
Confidence            79999998776432  56 78999999999999999999999999998887532   23678999999999999999999


Q ss_pred             CCCCCEEEecccc-------cc------------cCCCCCCCcceeEEEecCCceeeCCCCCCHHhHhccchhHHHHHHH
Q 016265          164 FKEGDEVYGDINE-------KA------------LEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEG  224 (392)
Q Consensus       164 ~~vGdrV~~~~~~-------~~------------~~~~~~~G~~a~~~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~a  224 (392)
                      |++||+|++.+.-       ..            ..+...+|+|++|+.++...++++|+++++++++.+++++.|||++
T Consensus        75 ~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~  154 (338)
T PRK09422         75 LKVGDRVSIAWFFEGCGHCEYCTTGRETLCRSVKNAGYTVDGGMAEQCIVTADYAVKVPEGLDPAQASSITCAGVTTYKA  154 (338)
T ss_pred             CCCCCEEEEccCCCCCCCChhhcCCCcccCCCccccCccccCcceeEEEEchHHeEeCCCCCCHHHeehhhcchhHHHHH
Confidence            9999999862110       00            0112236999999999999999999999999999999999999999


Q ss_pred             HHhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCC-Cccc----cCCCCccE
Q 016265          225 LERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTK-DNFE----DLPEKFDV  299 (392)
Q Consensus       225 l~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~-~~~~----~~~~~~D~  299 (392)
                      ++.+++++|++|||+| +|++|++++|+|+.+.|++++++++++++++.++++|++.++++.. .++.    +...++|.
T Consensus       155 ~~~~~~~~g~~vlV~g-~g~vG~~~~~la~~~~g~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~v~~~~~~~d~  233 (338)
T PRK09422        155 IKVSGIKPGQWIAIYG-AGGLGNLALQYAKNVFNAKVIAVDINDDKLALAKEVGADLTINSKRVEDVAKIIQEKTGGAHA  233 (338)
T ss_pred             HHhcCCCCCCEEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHcCCcEEecccccccHHHHHHHhcCCCcE
Confidence            9888999999999999 7999999999999734999999999999999999999999998754 3321    22347885


Q ss_pred             EEec-Cc--cHHHHHHhcccCCeEEEEcCCCCCCc----------eEEEE--eecHHHHHHHHHHHHCCCcccccCCCcc
Q 016265          300 VYDA-IG--QCDRAVKAIKEGGTVVALTGAVTPPG----------FRFVV--TSNGEVLKKLNPYLESGKVKPIIDPKGP  364 (392)
Q Consensus       300 vid~-~G--~~~~~~~~l~~~G~iv~~g~~~~~~~----------~~~~~--~~~~~~~~~~~~~l~~g~l~~~~~~t~~  364 (392)
                      ++++ .+  .++.++++++++|+++.+|.......          ..+..  ....+.++++++++++|.+.+.   .+.
T Consensus       234 vi~~~~~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~---v~~  310 (338)
T PRK09422        234 AVVTAVAKAAFNQAVDAVRAGGRVVAVGLPPESMDLSIPRLVLDGIEVVGSLVGTRQDLEEAFQFGAEGKVVPK---VQL  310 (338)
T ss_pred             EEEeCCCHHHHHHHHHhccCCCEEEEEeeCCCCceecHHHHhhcCcEEEEecCCCHHHHHHHHHHHHhCCCCcc---EEE
Confidence            5544 43  46899999999999999975432111          11111  1135678899999999998654   245


Q ss_pred             cchhhHHHHHHHHHhCCCCeeEEEEe
Q 016265          365 FPFSQVVEAFSYIETNKATGKVVIHP  390 (392)
Q Consensus       365 ~~l~~~~~A~~~l~~~~~~gKvvl~~  390 (392)
                      ++++++++||+.+.++...||+++.+
T Consensus       311 ~~~~~~~~a~~~~~~~~~~gkvvv~~  336 (338)
T PRK09422        311 RPLEDINDIFDEMEQGKIQGRMVIDF  336 (338)
T ss_pred             EcHHHHHHHHHHHHcCCccceEEEec
Confidence            89999999999999999889999864

>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase

Probab=100.00  E-value=9e-36  Score=290.89  Aligned_cols=297  Identities=27%  Similarity=0.344  Sum_probs=238.6

Q ss_pred             ceeEEEEcccCCcceEEEeccccCCCCCCCeEEEEEeEEecChHhHHhhcCCCCCCCCCCCCcCCCceeEEEEEeCCCCC
Q 016265           83 EMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVK  162 (392)
Q Consensus        83 ~mka~v~~~~~~~~~l~~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~~~p~v~G~e~~G~V~~vG~~v~  162 (392)
                      +|||+++.+++..  ++++ +.+.|.++++||+||+.++++|++|++...|.++   ..+|.++|||++|+|+++|+++.
T Consensus         2 ~~~a~~~~~~~~~--~~~~-~~~~p~~~~~~v~Vkv~a~gi~~~d~~~~~g~~~---~~~p~v~G~e~~G~V~~vG~~v~   75 (365)
T cd08278           2 KTTAAVVREPGGP--FVLE-DVELDDPRPDEVLVRIVATGICHTDLVVRDGGLP---TPLPAVLGHEGAGVVEAVGSAVT   75 (365)
T ss_pred             ccEEeeeccCCCc--ceEE-EeecCCCCCCeEEEEEEEeecCcccHHHhcCCCC---CCCCcccccceeEEEEEeCCCcc
Confidence            6899999986654  6777 8899999999999999999999999999988764   34678999999999999999999


Q ss_pred             CCCCCCEEEeccccc-----cc---------------CC--------------------CCCCCcceeEEEecCCceeeC
Q 016265          163 EFKEGDEVYGDINEK-----AL---------------EG--------------------PKQFGSLAEYTAVEERLLAPK  202 (392)
Q Consensus       163 ~~~vGdrV~~~~~~~-----~~---------------~~--------------------~~~~G~~a~~~~v~~~~~~~i  202 (392)
                      ++++||+|++....+     +.               .+                    ....|+|++|+.++++.++++
T Consensus        76 ~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~y~~v~~~~~~~i  155 (365)
T cd08278          76 GLKPGDHVVLSFASCGECANCLSGHPAYCENFFPLNFSGRRPDGSTPLSLDDGTPVHGHFFGQSSFATYAVVHERNVVKV  155 (365)
T ss_pred             cCCCCCEEEEcccCCCCChHHhCCCcccccCcccccccccccCCcccccccCCcccccccccccceeeEEEecchhEEEC
Confidence            999999998632100     00               00                    012489999999999999999


Q ss_pred             CCCCCHHhHhccchhHHHHHHHH-HhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCe-EEEEeCCcccHHHHHhcCCc
Q 016265          203 PKNLDFVQAAGLPLAIETAYEGL-ERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGAS-RVAATSSTRNLEFLKSLGAD  280 (392)
Q Consensus       203 P~~l~~~~aa~l~~~~~ta~~al-~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~-vv~~~~~~~~~~~~~~~G~~  280 (392)
                      |+++++++++.+++++.||++++ +...+++|++|+|+| +|++|++++|+|+.+ |++ +++++.+++|++.++++|++
T Consensus       156 P~~~s~~~a~~l~~~~~ta~~~~~~~~~~~~g~~vlI~g-~g~vG~~~~~la~~~-G~~~v~~~~~~~~k~~~~~~~g~~  233 (365)
T cd08278         156 DKDVPLELLAPLGCGIQTGAGAVLNVLKPRPGSSIAVFG-AGAVGLAAVMAAKIA-GCTTIIAVDIVDSRLELAKELGAT  233 (365)
T ss_pred             CCCCCHHHhhhhcchhhhhhHHHhhhcCCCCCCEEEEEC-CCHHHHHHHHHHHHc-CCCeEEEEeCCHHHHHHHHHcCCc
Confidence            99999999999999999999987 467889999999996 799999999999995 995 66677888999999999999


Q ss_pred             EEEeCCCCcccc-----CCCCccEEEecCc---cHHHHHHhcccCCeEEEEcCCCC--C----------CceEEEE----
Q 016265          281 LAIDYTKDNFED-----LPEKFDVVYDAIG---QCDRAVKAIKEGGTVVALTGAVT--P----------PGFRFVV----  336 (392)
Q Consensus       281 ~vi~~~~~~~~~-----~~~~~D~vid~~G---~~~~~~~~l~~~G~iv~~g~~~~--~----------~~~~~~~----  336 (392)
                      .++++.+.++.+     ..+++|+++||+|   .+..++++++++|+++.+|....  .          ....+..    
T Consensus       234 ~~i~~~~~~~~~~v~~~~~~~~d~vld~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (365)
T cd08278         234 HVINPKEEDLVAAIREITGGGVDYALDTTGVPAVIEQAVDALAPRGTLALVGAPPPGAEVTLDVNDLLVSGKTIRGVIEG  313 (365)
T ss_pred             EEecCCCcCHHHHHHHHhCCCCcEEEECCCCcHHHHHHHHHhccCCEEEEeCcCCCCCccccCHHHHhhcCceEEEeecC
Confidence            999987654322     1457999999997   35899999999999999986521  1          1111111    


Q ss_pred             -eecHHHHHHHHHHHHCCCcccccCCCcccchhhHHHHHHHHHhCCCCeeEEEE
Q 016265          337 -TSNGEVLKKLNPYLESGKVKPIIDPKGPFPFSQVVEAFSYIETNKATGKVVIH  389 (392)
Q Consensus       337 -~~~~~~~~~~~~~l~~g~l~~~~~~t~~~~l~~~~~A~~~l~~~~~~gKvvl~  389 (392)
                       ....+.++++++++++|++++.. +...|+++++++|++.+++++.. |++++
T Consensus       314 ~~~~~~~~~~~~~~l~~g~l~~~~-~~~~~~l~~~~~a~~~~~~~~~~-k~~~~  365 (365)
T cd08278         314 DSVPQEFIPRLIELYRQGKFPFDK-LVTFYPFEDINQAIADSESGKVI-KPVLR  365 (365)
T ss_pred             CcChHHHHHHHHHHHHcCCCChHH-heEEecHHHHHHHHHHHHCCCce-EEEEC
Confidence             01145678899999999986432 23579999999999999887764 88774

Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu

>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD)

Probab=100.00  E-value=1.9e-35  Score=285.77  Aligned_cols=300  Identities=30%  Similarity=0.417  Sum_probs=246.2

Q ss_pred             eeEEEEcccCCcceEEEeccccCCCCCCCeEEEEEeEEecChHhHHhhcCCCCCCCCCCCCcCCCceeEEEEEeCCCCCC
Q 016265           84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKE  163 (392)
Q Consensus        84 mka~v~~~~~~~~~l~~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~~~p~v~G~e~~G~V~~vG~~v~~  163 (392)
                      |||+++.+++ ...++++ +.+.|.+.++||+||+.++++|++|++.+.|.++.. ...|.++|||++|+|+++|++++.
T Consensus         1 m~a~~~~~~~-~~~~~~~-~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~-~~~~~~~g~e~~G~V~~vG~~~~~   77 (341)
T cd08297           1 MKAAVVEEFG-EKPYEVK-DVPVPEPGPGEVLVKLEASGVCHTDLHAALGDWPVK-PKLPLIGGHEGAGVVVAVGPGVSG   77 (341)
T ss_pred             CceEEeeccC-CCCceEE-EeeCCCCCCCeEEEEEEEeecchhHHHHHcCCCCcC-CCCCccCCcccceEEEEeCCCCCC
Confidence            7999998877 3347888 889999999999999999999999999988876422 345678999999999999999999


Q ss_pred             CCCCCEEEeccc-----c--cc------------cCCCCCCCcceeEEEecCCceeeCCCCCCHHhHhccchhHHHHHHH
Q 016265          164 FKEGDEVYGDIN-----E--KA------------LEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEG  224 (392)
Q Consensus       164 ~~vGdrV~~~~~-----~--~~------------~~~~~~~G~~a~~~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~a  224 (392)
                      +++||+|++...     .  ..            ..+....|+|++|+.++.+.++++|+++++++++.++..+.|||++
T Consensus        78 ~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~lp~~~~~~~~a~l~~~~~ta~~~  157 (341)
T cd08297          78 LKVGDRVGVKWLYDACGKCEYCRTGDETLCPNQKNSGYTVDGTFAEYAIADARYVTPIPDGLSFEQAAPLLCAGVTVYKA  157 (341)
T ss_pred             CCCCCEEEEecCCCCCCCCccccCCCcccCCCccccccccCCcceeEEEeccccEEECCCCCCHHHHHHHHcchHHHHHH
Confidence            999999987420     0  00            0011236899999999999999999999999999999999999999


Q ss_pred             HHhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCCcccc----C--CCCcc
Q 016265          225 LERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFED----L--PEKFD  298 (392)
Q Consensus       225 l~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~~----~--~~~~D  298 (392)
                      +...++++|++|||+|+++++|++++++|++ .|+++++++.++++.+.++++|+++++++...++.+    .  .+++|
T Consensus       158 ~~~~~~~~~~~vlV~g~~~~vg~~~~~~a~~-~g~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~vd  236 (341)
T cd08297         158 LKKAGLKPGDWVVISGAGGGLGHLGVQYAKA-MGLRVIAIDVGDEKLELAKELGADAFVDFKKSDDVEAVKELTGGGGAH  236 (341)
T ss_pred             HHhcCCCCCCEEEEECCCchHHHHHHHHHHH-CCCeEEEEeCCHHHHHHHHHcCCcEEEcCCCccHHHHHHHHhcCCCCC
Confidence            9877899999999999888899999999999 499999999999999999999999999887654322    1  35799


Q ss_pred             EEEecCc---cHHHHHHhcccCCeEEEEcCCCCCC-c----------eEEEEe--ecHHHHHHHHHHHHCCCcccccCCC
Q 016265          299 VVYDAIG---QCDRAVKAIKEGGTVVALTGAVTPP-G----------FRFVVT--SNGEVLKKLNPYLESGKVKPIIDPK  362 (392)
Q Consensus       299 ~vid~~G---~~~~~~~~l~~~G~iv~~g~~~~~~-~----------~~~~~~--~~~~~~~~~~~~l~~g~l~~~~~~t  362 (392)
                      ++||+.+   ....++++++++|+++.+|...... .          ..+...  ...+.+++++++++++++++.   .
T Consensus       237 ~vl~~~~~~~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~  313 (341)
T cd08297         237 AVVVTAVSAAAYEQALDYLRPGGTLVCVGLPPGGFIPLDPFDLVLRGITIVGSLVGTRQDLQEALEFAARGKVKPH---I  313 (341)
T ss_pred             EEEEcCCchHHHHHHHHHhhcCCEEEEecCCCCCCCCCCHHHHHhcccEEEEeccCCHHHHHHHHHHHHcCCCcce---e
Confidence            9999765   3578999999999999998543211 1          111111  125788999999999998753   2


Q ss_pred             cccchhhHHHHHHHHHhCCCCeeEEEEe
Q 016265          363 GPFPFSQVVEAFSYIETNKATGKVVIHP  390 (392)
Q Consensus       363 ~~~~l~~~~~A~~~l~~~~~~gKvvl~~  390 (392)
                      +.|++++++++|+.+..+...||+++++
T Consensus       314 ~~~~~~~~~~a~~~~~~~~~~gkvvi~~  341 (341)
T cd08297         314 QVVPLEDLNEVFEKMEEGKIAGRVVVDF  341 (341)
T ss_pred             EEEcHHHHHHHHHHHHcCCccceEEEeC
Confidence            5799999999999999998889999874

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha

>cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members

Probab=100.00  E-value=2.3e-35  Score=283.57  Aligned_cols=291  Identities=28%  Similarity=0.398  Sum_probs=242.9

Q ss_pred             eeEEEEcccCC--cceEEEeccccCCCCCCCeEEEEEeEEecChHhHHhhcCCCCCCCCCCCCcCCCceeEEEEEeCCCC
Q 016265           84 MKAWLYGEYGG--VDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQV  161 (392)
Q Consensus        84 mka~v~~~~~~--~~~l~~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~~~p~v~G~e~~G~V~~vG~~v  161 (392)
                      ||||++.+++.  .+.++++ +.+.|.+.++||+||+.++|+|+.|++...|.++.. ..+|.++|||++|+|+.+|+++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ev~i~v~~~gi~~~d~~~~~g~~~~~-~~~p~~~g~e~~G~v~~vG~~v   79 (329)
T cd08250           2 FRKLVVHRLSPNFREATSIV-DVPVPLPGPGEVLVKNRFVGINASDINFTAGRYDPG-VKPPFDCGFEGVGEVVAVGEGV   79 (329)
T ss_pred             ceEEEeccCCCCcccCceEE-ecCCCCCCCCEEEEEEEEEecCHHHHHHHhCCCCCC-CCCCcccCceeEEEEEEECCCC
Confidence            89999999887  6778888 899999999999999999999999999988876422 3468899999999999999999


Q ss_pred             CCCCCCCEEEecccccccCCCCCCCcceeEEEecCCceeeCCCCCCHHhHhccchhHHHHHHHHH-hcCCCCCCeEEEEc
Q 016265          162 KEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLE-RTGFSAGKSILVLN  240 (392)
Q Consensus       162 ~~~~vGdrV~~~~~~~~~~~~~~~G~~a~~~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~al~-~~~~~~g~~VlI~G  240 (392)
                      .++++||+|++..          .|+|++|+.++.+.++++|++  +.+++.+++++.|||+++. ..++++|++|+|+|
T Consensus        80 ~~~~~Gd~V~~~~----------~g~~~s~~~v~~~~~~~ip~~--~~~~a~l~~~~~ta~~~l~~~~~~~~~~~vlI~g  147 (329)
T cd08250          80 TDFKVGDAVATMS----------FGAFAEYQVVPARHAVPVPEL--KPEVLPLLVSGLTASIALEEVGEMKSGETVLVTA  147 (329)
T ss_pred             CCCCCCCEEEEec----------CcceeEEEEechHHeEECCCC--cchhhhcccHHHHHHHHHHHhcCCCCCCEEEEEe
Confidence            9999999999864          489999999999999999997  3467778899999999985 46889999999999


Q ss_pred             CCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCCcccc-----CCCCccEEEecCc--cHHHHHHh
Q 016265          241 GSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFED-----LPEKFDVVYDAIG--QCDRAVKA  313 (392)
Q Consensus       241 a~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~~-----~~~~~D~vid~~G--~~~~~~~~  313 (392)
                      ++|++|++++|+|+. .|++++++++++++.+.++++|++.+++..+..+.+     ..+++|++||++|  ....++++
T Consensus       148 a~g~ig~~~~~~a~~-~g~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~vd~v~~~~g~~~~~~~~~~  226 (329)
T cd08250         148 AAGGTGQFAVQLAKL-AGCHVIGTCSSDEKAEFLKSLGCDRPINYKTEDLGEVLKKEYPKGVDVVYESVGGEMFDTCVDN  226 (329)
T ss_pred             CccHHHHHHHHHHHH-cCCeEEEEeCcHHHHHHHHHcCCceEEeCCCccHHHHHHHhcCCCCeEEEECCcHHHHHHHHHH
Confidence            999999999999999 599999999998999999999999998876654321     2357999999998  45789999


Q ss_pred             cccCCeEEEEcCCCCC--------------------CceEEEEee-------cHHHHHHHHHHHHCCCcccccCCCcccc
Q 016265          314 IKEGGTVVALTGAVTP--------------------PGFRFVVTS-------NGEVLKKLNPYLESGKVKPIIDPKGPFP  366 (392)
Q Consensus       314 l~~~G~iv~~g~~~~~--------------------~~~~~~~~~-------~~~~~~~~~~~l~~g~l~~~~~~t~~~~  366 (392)
                      ++++|+++.+|.....                    ....+....       ..+.+.++++++.++.+++....++.|+
T Consensus       227 l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  306 (329)
T cd08250         227 LALKGRLIVIGFISGYQSGTGPSPVKGATLPPKLLAKSASVRGFFLPHYAKLIPQHLDRLLQLYQRGKLVCEVDPTRFRG  306 (329)
T ss_pred             hccCCeEEEEecccCCcccCcccccccccccHHHhhcCceEEEEEhHHHHHHHHHHHHHHHHHHHCCCeeeeECCccccC
Confidence            9999999998754310                    011111111       1345788889999999887555566799


Q ss_pred             hhhHHHHHHHHHhCCCCeeEEEE
Q 016265          367 FSQVVEAFSYIETNKATGKVVIH  389 (392)
Q Consensus       367 l~~~~~A~~~l~~~~~~gKvvl~  389 (392)
                      ++++++|++.+.+++..||++++
T Consensus       307 ~~~~~~a~~~~~~~~~~~kvvv~  329 (329)
T cd08250         307 LESVADAVDYLYSGKNIGKVVVE  329 (329)
T ss_pred             HHHHHHHHHHHHcCCCCceEEeC
Confidence            99999999999998888898874

Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.

>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like

Probab=100.00  E-value=1.3e-35  Score=287.45  Aligned_cols=299  Identities=22%  Similarity=0.303  Sum_probs=240.3

Q ss_pred             eeEEEEcccCCcceEEEeccccCCCC-CCCeEEEEEeEEecChHhHHhhcCCCCCCCCCCCCcCCCceeEEEEEeCCCCC
Q 016265           84 MKAWLYGEYGGVDVLKFDEKVTVPQV-KEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVK  162 (392)
Q Consensus        84 mka~v~~~~~~~~~l~~~~~~~~p~~-~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~~~p~v~G~e~~G~V~~vG~~v~  162 (392)
                      |||+++.+++.   ++++ +.+.|+| .++||+||+.++++|++|++.+.|.++.  ..+|.++|||++|+|+++|++++
T Consensus         1 m~a~~~~~~~~---~~~~-~~~~p~~~~~~ev~v~v~a~~i~~~d~~~~~g~~~~--~~~~~~~g~e~~G~V~~~G~~v~   74 (345)
T cd08286           1 MKALVYHGPGK---ISWE-DRPKPTIQEPTDAIVKMLKTTICGTDLHILKGDVPT--VTPGRILGHEGVGVVEEVGSAVT   74 (345)
T ss_pred             CceEEEecCCc---eeEE-ecCCCCCCCCCeEEEEEEEeeecchhhHHHcCCCCC--CCCCceecccceEEEEEeccCcc
Confidence            78999987765   7887 8899986 8999999999999999999999987643  33578999999999999999999


Q ss_pred             CCCCCCEEEecccccc-------------------cCCCCCCCcceeEEEecCC--ceeeCCCCCCHHhHhccchhHHHH
Q 016265          163 EFKEGDEVYGDINEKA-------------------LEGPKQFGSLAEYTAVEER--LLAPKPKNLDFVQAAGLPLAIETA  221 (392)
Q Consensus       163 ~~~vGdrV~~~~~~~~-------------------~~~~~~~G~~a~~~~v~~~--~~~~iP~~l~~~~aa~l~~~~~ta  221 (392)
                      ++++||+|++.....+                   ..+...+|+|++|+.++.+  .++++|++++..+++.++++++||
T Consensus        75 ~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~~lp~~~~~~~aa~l~~~~~ta  154 (345)
T cd08286          75 NFKVGDRVLISCISSCGTCGYCRKGLYSHCESGGWILGNLIDGTQAEYVRIPHADNSLYKLPEGVDEEAAVMLSDILPTG  154 (345)
T ss_pred             ccCCCCEEEECCcCCCCCChHHHCcCcccCCCcccccccccCCeeeeEEEcccccCceEECCCCCCHHHhhhccchhHHH
Confidence            9999999987532100                   0111235899999999987  899999999999999999999999


Q ss_pred             HHHH-HhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcC-CeEEEEeCCcccHHHHHhcCCcEEEeCCCCcccc----C--
Q 016265          222 YEGL-ERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFG-ASRVAATSSTRNLEFLKSLGADLAIDYTKDNFED----L--  293 (392)
Q Consensus       222 ~~al-~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G-~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~~----~--  293 (392)
                      |+++ ...++.+|++|+|.| +|++|++++|+|+.+ | .++++++.+++|.+.++++|++.++++.+.++.+    .  
T Consensus       155 ~~~~~~~~~~~~g~~vlI~g-~g~~g~~~~~~a~~~-G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~i~~~~~  232 (345)
T cd08286         155 YECGVLNGKVKPGDTVAIVG-AGPVGLAALLTAQLY-SPSKIIMVDLDDNRLEVAKKLGATHTVNSAKGDAIEQVLELTD  232 (345)
T ss_pred             HHHHHhhcCCCCCCEEEEEC-CCHHHHHHHHHHHHc-CCCeEEEEcCCHHHHHHHHHhCCCceeccccccHHHHHHHHhC
Confidence            9976 567889999999987 799999999999995 8 6777777788889999999999999987654322    1  


Q ss_pred             CCCccEEEecCcc---HHHHHHhcccCCeEEEEcCCCCCC----------ceEEEEe-ecHHHHHHHHHHHHCCCccccc
Q 016265          294 PEKFDVVYDAIGQ---CDRAVKAIKEGGTVVALTGAVTPP----------GFRFVVT-SNGEVLKKLNPYLESGKVKPII  359 (392)
Q Consensus       294 ~~~~D~vid~~G~---~~~~~~~l~~~G~iv~~g~~~~~~----------~~~~~~~-~~~~~~~~~~~~l~~g~l~~~~  359 (392)
                      ..++|++|||+|.   ++.++++++++|+++.+|......          ...+... .....+++++++++++.+++..
T Consensus       233 ~~~~d~vld~~g~~~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  312 (345)
T cd08286         233 GRGVDVVIEAVGIPATFELCQELVAPGGHIANVGVHGKPVDLHLEKLWIKNITITTGLVDTNTTPMLLKLVSSGKLDPSK  312 (345)
T ss_pred             CCCCCEEEECCCCHHHHHHHHHhccCCcEEEEecccCCCCCcCHHHHhhcCcEEEeecCchhhHHHHHHHHHcCCCChHH
Confidence            2479999999883   578889999999999998543211          1111111 1235678899999999988654


Q ss_pred             CCCcccchhhHHHHHHHHHhCCC--CeeEEEEe
Q 016265          360 DPKGPFPFSQVVEAFSYIETNKA--TGKVVIHP  390 (392)
Q Consensus       360 ~~t~~~~l~~~~~A~~~l~~~~~--~gKvvl~~  390 (392)
                      ..++.|+++++++|++.+.+...  ..|++|+|
T Consensus       313 ~~~~~~~l~~~~~a~~~~~~~~~~~~~k~~~~~  345 (345)
T cd08286         313 LVTHRFKLSEIEKAYDTFSAAAKHKALKVIIDF  345 (345)
T ss_pred             cEEeEeeHHHHHHHHHHHhccCCCCeeEEEEeC
Confidence            45688999999999999987643  35999875

This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (

>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase

Probab=100.00  E-value=2.1e-35  Score=286.59  Aligned_cols=300  Identities=27%  Similarity=0.363  Sum_probs=241.8

Q ss_pred             eeEEEEcccCCcceEEEeccccCCCCCCCeEEEEEeEEecChHhHHhhcCCCCC----------CCCCCCCcCCCceeEE
Q 016265           84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKA----------TDSPLPTVPGYDVAGV  153 (392)
Q Consensus        84 mka~v~~~~~~~~~l~~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~----------~~~~~p~v~G~e~~G~  153 (392)
                      |||+++..++..  ++++ +.+.|+++++||+||+.++++|++|++.+.|.++.          ....+|.++|||++|+
T Consensus         1 ~~a~~~~~~~~~--~~~~-~~~~p~~~~~ev~V~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~e~~G~   77 (350)
T cd08240           1 MKAAAVVEPGKP--LEEV-EIDTPKPPGTEVLVKVTACGVCHSDLHIWDGGYDLGGGKTMSLDDRGVKLPLVLGHEIVGE   77 (350)
T ss_pred             CeeEEeccCCCC--ceEE-ecCCCCCCCCeEEEEEEEEecCchhHHHHcCCCCccccccccccccCCCCCcccccceeEE
Confidence            799999877654  6777 89999999999999999999999999998886531          0234567899999999


Q ss_pred             EEEeCCCCCCCCCCCEEEecccccc------c------------CCCCCCCcceeEEEecCCceeeCCCCCCHHhHhccc
Q 016265          154 VVKVGTQVKEFKEGDEVYGDINEKA------L------------EGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLP  215 (392)
Q Consensus       154 V~~vG~~v~~~~vGdrV~~~~~~~~------~------------~~~~~~G~~a~~~~v~~~~~~~iP~~l~~~~aa~l~  215 (392)
                      |+++|++++++++||+|++......      .            .+....|+|++|+.++.+.++++|+++++.+++.++
T Consensus        78 V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~s~~~aa~l~  157 (350)
T cd08240          78 VVAVGPDAADVKVGDKVLVYPWIGCGECPVCLAGDENLCAKGRALGIFQDGGYAEYVIVPHSRYLVDPGGLDPALAATLA  157 (350)
T ss_pred             EEeeCCCCCCCCCCCEEEECCcCCCCCChHHHCcCcccCCCCCceeeeccCcceeeEEecHHHeeeCCCCCCHHHeehhh
Confidence            9999999999999999988631100      0            001136899999999999999999999999999999


Q ss_pred             hhHHHHHHHHHhc-CCCCCCeEEEEcCCCcHHHHHHHHHHHhcCC-eEEEEeCCcccHHHHHhcCCcEEEeCCCCcccc-
Q 016265          216 LAIETAYEGLERT-GFSAGKSILVLNGSGGVGSLVIQLAKQVFGA-SRVAATSSTRNLEFLKSLGADLAIDYTKDNFED-  292 (392)
Q Consensus       216 ~~~~ta~~al~~~-~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~-~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~~-  292 (392)
                      +.+.|||+++... ..++|++|+|+| +|++|++++|+||.+ |+ ++++++.+++|++.++++|++.+++.++..+.+ 
T Consensus       158 ~~~~tA~~~~~~~~~~~~~~~vlI~g-~g~vg~~~~~~a~~~-G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  235 (350)
T cd08240         158 CSGLTAYSAVKKLMPLVADEPVVIIG-AGGLGLMALALLKAL-GPANIIVVDIDEAKLEAAKAAGADVVVNGSDPDAAKR  235 (350)
T ss_pred             chhhhHHHHHHhcccCCCCCEEEEEC-CcHHHHHHHHHHHHc-CCCeEEEEeCCHHHHHHHHHhCCcEEecCCCccHHHH
Confidence            9999999999654 455899999996 899999999999995 99 577777889999999999999988876644321 


Q ss_pred             ----CCCCccEEEecCcc---HHHHHHhcccCCeEEEEcCCCCCC----------ceEEE--EeecHHHHHHHHHHHHCC
Q 016265          293 ----LPEKFDVVYDAIGQ---CDRAVKAIKEGGTVVALTGAVTPP----------GFRFV--VTSNGEVLKKLNPYLESG  353 (392)
Q Consensus       293 ----~~~~~D~vid~~G~---~~~~~~~l~~~G~iv~~g~~~~~~----------~~~~~--~~~~~~~~~~~~~~l~~g  353 (392)
                          ..+++|++||++|.   ++.++++|+++|+++.++......          .+.+.  .....+.+.+++++++++
T Consensus       236 ~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ll~~~  315 (350)
T cd08240         236 IIKAAGGGVDAVIDFVNNSATASLAFDILAKGGKLVLVGLFGGEATLPLPLLPLRALTIQGSYVGSLEELRELVALAKAG  315 (350)
T ss_pred             HHHHhCCCCcEEEECCCCHHHHHHHHHHhhcCCeEEEECCCCCCCcccHHHHhhcCcEEEEcccCCHHHHHHHHHHHHcC
Confidence                12379999999973   689999999999999987543211          11111  112346788999999999


Q ss_pred             CcccccCCCcccchhhHHHHHHHHHhCCCCeeEEEEe
Q 016265          354 KVKPIIDPKGPFPFSQVVEAFSYIETNKATGKVVIHP  390 (392)
Q Consensus       354 ~l~~~~~~t~~~~l~~~~~A~~~l~~~~~~gKvvl~~  390 (392)
                      .+++.  +...|+++++++||+.+.+++..||+++++
T Consensus       316 ~i~~~--~~~~~~~~~~~~a~~~~~~~~~~gkvvv~~  350 (350)
T cd08240         316 KLKPI--PLTERPLSDVNDALDDLKAGKVVGRAVLKP  350 (350)
T ss_pred             CCccc--eeeEEcHHHHHHHHHHHHcCCccceEEecC
Confidence            98865  346899999999999999998889999864

6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy

>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=100.00  E-value=1.9e-35  Score=283.12  Aligned_cols=288  Identities=25%  Similarity=0.339  Sum_probs=230.1

Q ss_pred             eeEEEEcccCCcceEEEeccccCCCCCCCeEEEEEeEEecChHhHHhhcCCCCCCCCCCCCcCCCceeEEEEEeCCCCCC
Q 016265           84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKE  163 (392)
Q Consensus        84 mka~v~~~~~~~~~l~~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~~~p~v~G~e~~G~V~~vG~~v~~  163 (392)
                      |||+++.+++.   ++++ +.+.|+++++||+||+.++++|++|++...|.++     +|.++|||++|+|+++|++   
T Consensus         1 ~~a~~~~~~~~---~~~~-~~~~p~~~~~~vlV~v~a~~i~~~d~~~~~g~~~-----~~~~~G~e~~G~Vv~~G~~---   68 (319)
T cd08242           1 MKALVLDGGLD---LRVE-DLPKPEPPPGEALVRVLLAGICNTDLEIYKGYYP-----FPGVPGHEFVGIVEEGPEA---   68 (319)
T ss_pred             CeeEEEeCCCc---EEEE-ECCCCCCCCCeEEEEEEEEEEccccHHHHcCCCC-----CCCccCceEEEEEEEeCCC---
Confidence            68999987553   8888 8999999999999999999999999999888653     5778999999999999987   


Q ss_pred             CCCCCEEEecccc------------------cccCCC-CCCCcceeEEEecCCceeeCCCCCCHHhHhccchhHHHHHHH
Q 016265          164 FKEGDEVYGDINE------------------KALEGP-KQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEG  224 (392)
Q Consensus       164 ~~vGdrV~~~~~~------------------~~~~~~-~~~G~~a~~~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~a  224 (392)
                      +++||||......                  ....+. ...|+|++|+.++.+.++++|+++++++++.+ ..+.++|.+
T Consensus        69 ~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~lP~~~~~~~aa~~-~~~~~~~~~  147 (319)
T cd08242          69 ELVGKRVVGEINIACGRCEYCRRGLYTHCPNRTVLGIVDRDGAFAEYLTLPLENLHVVPDLVPDEQAVFA-EPLAAALEI  147 (319)
T ss_pred             CCCCCeEEECCCcCCCCChhhhCcCcccCCCCcccCccCCCCceEEEEEechHHeEECcCCCCHHHhhhh-hHHHHHHHH
Confidence            6799999753211                  001111 23689999999999999999999999988864 444567777


Q ss_pred             HHhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCCccccCCCCccEEEecC
Q 016265          225 LERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFEDLPEKFDVVYDAI  304 (392)
Q Consensus       225 l~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~~~~~~~D~vid~~  304 (392)
                      ++..++++|++|+|+| +|++|++++|+|+.+ |+++++++.++++++.++++|++.++++.+.   ...+++|++|||+
T Consensus       148 ~~~~~~~~g~~vlV~g-~g~vg~~~~q~a~~~-G~~vi~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~~d~vid~~  222 (319)
T cd08242         148 LEQVPITPGDKVAVLG-DGKLGLLIAQVLALT-GPDVVLVGRHSEKLALARRLGVETVLPDEAE---SEGGGFDVVVEAT  222 (319)
T ss_pred             HHhcCCCCCCEEEEEC-CCHHHHHHHHHHHHc-CCeEEEEcCCHHHHHHHHHcCCcEEeCcccc---ccCCCCCEEEECC
Confidence            7888899999999997 899999999999995 9998888889999999999999988887543   2335799999999


Q ss_pred             cc---HHHHHHhcccCCeEEEEcCCCCCCceEE---------EEeecHHHHHHHHHHHHCCCcccccCCCcccchhhHHH
Q 016265          305 GQ---CDRAVKAIKEGGTVVALTGAVTPPGFRF---------VVTSNGEVLKKLNPYLESGKVKPIIDPKGPFPFSQVVE  372 (392)
Q Consensus       305 G~---~~~~~~~l~~~G~iv~~g~~~~~~~~~~---------~~~~~~~~~~~~~~~l~~g~l~~~~~~t~~~~l~~~~~  372 (392)
                      |.   ++.++++++++|+++..+.......+.+         ........+++++++++++++++...+++.|+++++++
T Consensus       223 g~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~  302 (319)
T cd08242         223 GSPSGLELALRLVRPRGTVVLKSTYAGPASFDLTKAVVNEITLVGSRCGPFAPALRLLRKGLVDVDPLITAVYPLEEALE  302 (319)
T ss_pred             CChHHHHHHHHHhhcCCEEEEEcccCCCCccCHHHheecceEEEEEecccHHHHHHHHHcCCCChhhceEEEEeHHHHHH
Confidence            73   5788999999999998764332111110         11111123788999999999965434678999999999


Q ss_pred             HHHHHHhCCCCeeEEEEe
Q 016265          373 AFSYIETNKATGKVVIHP  390 (392)
Q Consensus       373 A~~~l~~~~~~gKvvl~~  390 (392)
                      ||+.+.++. .+|+|++|
T Consensus       303 a~~~~~~~~-~~k~vi~~  319 (319)
T cd08242         303 AFERAAEPG-ALKVLLRP  319 (319)
T ss_pred             HHHHHhcCC-ceEEEeCC
Confidence            999998766 48999875

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta

>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members

Probab=100.00  E-value=5.8e-35  Score=281.41  Aligned_cols=299  Identities=32%  Similarity=0.457  Sum_probs=246.4

Q ss_pred             eeEEEEcccCCcceEEEeccccCCCCCCCeEEEEEeEEecChHhHHhhcCCCCCCCCCCCCcCCCceeEEEEEeCCCCCC
Q 016265           84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKE  163 (392)
Q Consensus        84 mka~v~~~~~~~~~l~~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~~~p~v~G~e~~G~V~~vG~~v~~  163 (392)
                      ||++++..++.+. +.+. +.+.|.+++++|+|++.++++|+.|++...|.++ ....+|.++|+|++|+|+++|++++.
T Consensus         1 ~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~v~i~v~~~~~~~~d~~~~~g~~~-~~~~~~~~~g~~~~G~v~~~G~~v~~   77 (338)
T cd08254           1 MKAWRFHKGSKGL-LVLE-EVPVPEPGPGEVLVKVKAAGVCHSDLHILDGGVP-TLTKLPLTLGHEIAGTVVEVGAGVTN   77 (338)
T ss_pred             CeeEEEecCCCCc-eEEe-ccCCCCCCCCeEEEEEEEEeeccHhHHHHcCCCc-ccCCCCEeccccccEEEEEECCCCcc
Confidence            7999999888765 6777 7889999999999999999999999999988765 22345778999999999999999999


Q ss_pred             CCCCCEEEecccc------------------cccCCCCCCCcceeEEEecCCceeeCCCCCCHHhHhccchhHHHHHHHH
Q 016265          164 FKEGDEVYGDINE------------------KALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGL  225 (392)
Q Consensus       164 ~~vGdrV~~~~~~------------------~~~~~~~~~G~~a~~~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~al  225 (392)
                      +++||+|++....                  ....|....|+|++|+.++.+.++++|+++++++++.++.++.|||+++
T Consensus        78 ~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~a~~~~~~~~ta~~~l  157 (338)
T cd08254          78 FKVGDRVAVPAVIPCGACALCRRGRGNLCLNQGMPGLGIDGGFAEYIVVPARALVPVPDGVPFAQAAVATDAVLTPYHAV  157 (338)
T ss_pred             CCCCCEEEECCCCCCCCChhhhCcCcccCCCCCccccccCCcceeeEEechHHeEECCCCCCHHHhhhhcchHHHHHHHH
Confidence            9999999872110                  0011223358999999999999999999999999999999999999998


Q ss_pred             H-hcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCCcccc-----CCCCccE
Q 016265          226 E-RTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFED-----LPEKFDV  299 (392)
Q Consensus       226 ~-~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~~-----~~~~~D~  299 (392)
                      . ...++++++|||.| +|++|++++++|+. .|+++++++.++++.+.++++|++++++..+....+     ..+++|+
T Consensus       158 ~~~~~~~~~~~vli~g-~g~vG~~~~~la~~-~G~~V~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~D~  235 (338)
T cd08254         158 VRAGEVKPGETVLVIG-LGGLGLNAVQIAKA-MGAAVIAVDIKEEKLELAKELGADEVLNSLDDSPKDKKAAGLGGGFDV  235 (338)
T ss_pred             HhccCCCCCCEEEEEC-CcHHHHHHHHHHHH-cCCEEEEEcCCHHHHHHHHHhCCCEEEcCCCcCHHHHHHHhcCCCceE
Confidence            5 45689999999975 89999999999999 499999899999999999999999988876544322     2457999


Q ss_pred             EEecCc---cHHHHHHhcccCCeEEEEcCCCCCCceE------------EEEeecHHHHHHHHHHHHCCCcccccCCCcc
Q 016265          300 VYDAIG---QCDRAVKAIKEGGTVVALTGAVTPPGFR------------FVVTSNGEVLKKLNPYLESGKVKPIIDPKGP  364 (392)
Q Consensus       300 vid~~G---~~~~~~~~l~~~G~iv~~g~~~~~~~~~------------~~~~~~~~~~~~~~~~l~~g~l~~~~~~t~~  364 (392)
                      ++||+|   .++.++++++++|+++.++.......+.            .........+++++++++++.+++.   .+.
T Consensus       236 vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~---~~~  312 (338)
T cd08254         236 IFDFVGTQPTFEDAQKAVKPGGRIVVVGLGRDKLTVDLSDLIARELRIIGSFGGTPEDLPEVLDLIAKGKLDPQ---VET  312 (338)
T ss_pred             EEECCCCHHHHHHHHHHhhcCCEEEEECCCCCCCccCHHHHhhCccEEEEeccCCHHHHHHHHHHHHcCCCccc---cee
Confidence            999997   3688999999999999997543211111            0111236778899999999999865   468


Q ss_pred             cchhhHHHHHHHHHhCCCCeeEEEEe
Q 016265          365 FPFSQVVEAFSYIETNKATGKVVIHP  390 (392)
Q Consensus       365 ~~l~~~~~A~~~l~~~~~~gKvvl~~  390 (392)
                      |++++++++++.+.+++..||+|++|
T Consensus       313 ~~~~~~~~a~~~~~~~~~~~kvv~~~  338 (338)
T cd08254         313 RPLDEIPEVLERLHKGKVKGRVVLVP  338 (338)
T ss_pred             EcHHHHHHHHHHHHcCCccceEEEeC
Confidence            99999999999999999999999875

This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio

>PRK13771 putative alcohol dehydrogenase; Provisional

Probab=100.00  E-value=1.7e-35  Score=285.22  Aligned_cols=297  Identities=27%  Similarity=0.420  Sum_probs=244.2

Q ss_pred             eeEEEEcccCCcceEEEeccccCCCCCCCeEEEEEeEEecChHhHHhhcCCCCCCCCCCCCcCCCceeEEEEEeCCCCCC
Q 016265           84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKE  163 (392)
Q Consensus        84 mka~v~~~~~~~~~l~~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~~~p~v~G~e~~G~V~~vG~~v~~  163 (392)
                      |||++++++++.  ++++ +.+.|.+++|||+||+.++++|++|++...|.++.  .++|.++|||++|+|+++|+++..
T Consensus         1 m~a~~~~~~~~~--~~~~-~~~~~~~~~~~v~V~v~~~~i~~~d~~~~~g~~~~--~~~~~~~g~e~~G~v~~~g~~~~~   75 (334)
T PRK13771          1 MKAVILPGFKQG--YRIE-EVPDPKPGKDEVVIKVNYAGLCYRDLLQLQGFYPR--MKYPVILGHEVVGTVEEVGENVKG   75 (334)
T ss_pred             CeeEEEcCCCCC--cEEE-eCCCCCCCCCeEEEEEEEEeechhhHHHhcCCCCC--CCCCeeccccceEEEEEeCCCCcc
Confidence            789999988864  7777 88999999999999999999999999988887642  345788999999999999999989


Q ss_pred             CCCCCEEEecccccc------------------cCCCCCCCcceeEEEecCCceeeCCCCCCHHhHhccchhHHHHHHHH
Q 016265          164 FKEGDEVYGDINEKA------------------LEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGL  225 (392)
Q Consensus       164 ~~vGdrV~~~~~~~~------------------~~~~~~~G~~a~~~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~al  225 (392)
                      +++||+|++.....+                  ..+....|+|++|+.++.+.++++|+++++.+++.+++++.+||+++
T Consensus        76 ~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~~a~l~~~~~~a~~~~  155 (334)
T PRK13771         76 FKPGDRVASLLYAPDGTCEYCRSGEEAYCKNRLGYGEELDGFFAEYAKVKVTSLVKVPPNVSDEGAVIVPCVTGMVYRGL  155 (334)
T ss_pred             CCCCCEEEECCCCCCcCChhhcCCCcccCccccccccccCceeeeeeecchhceEECCCCCCHHHhhcccchHHHHHHHH
Confidence            999999998631100                  01112368999999999999999999999999999999999999999


Q ss_pred             HhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCC--ccccCCCCccEEEec
Q 016265          226 ERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKD--NFEDLPEKFDVVYDA  303 (392)
Q Consensus       226 ~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~--~~~~~~~~~D~vid~  303 (392)
                      ....+++|++|+|+|++|.+|++++|+|+.+ |++++++++++++++.++++ +++++++.+.  .+.+. .++|++|||
T Consensus       156 ~~~~~~~~~~vlI~g~~g~~g~~~~~la~~~-g~~vi~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~-~~~d~~ld~  232 (334)
T PRK13771        156 RRAGVKKGETVLVTGAGGGVGIHAIQVAKAL-GAKVIAVTSSESKAKIVSKY-ADYVIVGSKFSEEVKKI-GGADIVIET  232 (334)
T ss_pred             HhcCCCCCCEEEEECCCccHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHH-HHHhcCchhHHHHHHhc-CCCcEEEEc
Confidence            7778999999999998899999999999995 99999999999999999888 7777776511  11223 379999999


Q ss_pred             Cc--cHHHHHHhcccCCeEEEEcCCCCC----C--------ceEEE--EeecHHHHHHHHHHHHCCCcccccCCCcccch
Q 016265          304 IG--QCDRAVKAIKEGGTVVALTGAVTP----P--------GFRFV--VTSNGEVLKKLNPYLESGKVKPIIDPKGPFPF  367 (392)
Q Consensus       304 ~G--~~~~~~~~l~~~G~iv~~g~~~~~----~--------~~~~~--~~~~~~~~~~~~~~l~~g~l~~~~~~t~~~~l  367 (392)
                      +|  ....++++++++|+++.+|.....    .        ...+.  .....+.++++++++++|.+++.  +++.|++
T Consensus       233 ~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~  310 (334)
T PRK13771        233 VGTPTLEESLRSLNMGGKIIQIGNVDPSPTYSLRLGYIILKDIEIIGHISATKRDVEEALKLVAEGKIKPV--IGAEVSL  310 (334)
T ss_pred             CChHHHHHHHHHHhcCCEEEEEeccCCCCCcccCHHHHHhcccEEEEecCCCHHHHHHHHHHHHcCCCcce--EeeeEcH
Confidence            98  458899999999999999854311    1        11111  12346778999999999998754  5678999


Q ss_pred             hhHHHHHHHHHhCCCCeeEEEEe
Q 016265          368 SQVVEAFSYIETNKATGKVVIHP  390 (392)
Q Consensus       368 ~~~~~A~~~l~~~~~~gKvvl~~  390 (392)
                      +++++||+.+.++...||+++.+
T Consensus       311 ~~~~~a~~~~~~~~~~~kvv~~~  333 (334)
T PRK13771        311 SEIDKALEELKDKSRIGKILVKP  333 (334)
T ss_pred             HHHHHHHHHHHcCCCcceEEEec
Confidence            99999999999988889999875

>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family

Probab=100.00  E-value=2.8e-35  Score=287.67  Aligned_cols=298  Identities=31%  Similarity=0.459  Sum_probs=243.4

Q ss_pred             eeEEEEcccCCcceEEEeccccCCCCCCCeEEEEEeEEecChHhHHhhcCCCCCCCCCCCCcCCCceeEEEEEeCCCCCC
Q 016265           84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKE  163 (392)
Q Consensus        84 mka~v~~~~~~~~~l~~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~~~p~v~G~e~~G~V~~vG~~v~~  163 (392)
                      ||||++.+++..  ++++ +.+.|.++++||+|++.++++|++|++...|.++   ..+|.++|||++|+|+++|+++.+
T Consensus         1 ~~a~~~~~~~~~--~~~~-~~~~~~~~~~~v~v~v~~~~l~~~d~~~~~~~~~---~~~p~~~g~e~~G~v~~vG~~~~~   74 (367)
T cd08263           1 MKAAVLKGPNPP--LTIE-EIPVPRPKEGEILIRVAACGVCHSDLHVLKGELP---FPPPFVLGHEISGEVVEVGPNVEN   74 (367)
T ss_pred             CeeEEEecCCCC--cEEE-EeeCCCCCCCeEEEEEEEeeeCcchHHHhcCCCC---CCCCcccccccceEEEEeCCCCCC
Confidence            799999887644  6777 7899999999999999999999999999888764   256789999999999999999988


Q ss_pred             ---CCCCCEEEecccccc-------------cCC---------------------------CCCCCcceeEEEecCCcee
Q 016265          164 ---FKEGDEVYGDINEKA-------------LEG---------------------------PKQFGSLAEYTAVEERLLA  200 (392)
Q Consensus       164 ---~~vGdrV~~~~~~~~-------------~~~---------------------------~~~~G~~a~~~~v~~~~~~  200 (392)
                         +++||+|++.....+             ..+                           ....|+|++|+.++.+.++
T Consensus        75 ~~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  154 (367)
T cd08263          75 PYGLSVGDRVVGSFIMPCGKCRYCARGKENLCEDFFAYNRLKGTLYDGTTRLFRLDGGPVYMYSMGGLAEYAVVPATALA  154 (367)
T ss_pred             CCcCCCCCEEEEcCCCCCCCChHHhCcCcccCcCccccccccccccCCcccccccCCCccccccCCcceeEEEechhhEE
Confidence               999999998421000             000                           0135899999999999999


Q ss_pred             eCCCCCCHHhHhccchhHHHHHHHHHh-cCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCe-EEEEeCCcccHHHHHhcC
Q 016265          201 PKPKNLDFVQAAGLPLAIETAYEGLER-TGFSAGKSILVLNGSGGVGSLVIQLAKQVFGAS-RVAATSSTRNLEFLKSLG  278 (392)
Q Consensus       201 ~iP~~l~~~~aa~l~~~~~ta~~al~~-~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~-vv~~~~~~~~~~~~~~~G  278 (392)
                      ++|+++++.+++.+++++.|||+++.. ..+.+|++|+|+| +|++|++++++|+. .|++ +++++.++++.+.++++|
T Consensus       155 ~~P~~is~~~aa~l~~~~~tA~~~l~~~~~~~~g~~VlI~g-~g~vG~~~~~lak~-~G~~~vi~~~~s~~~~~~~~~~g  232 (367)
T cd08263         155 PLPESLDYTESAVLGCAGFTAYGALKHAADVRPGETVAVIG-VGGVGSSAIQLAKA-FGASPIIAVDVRDEKLAKAKELG  232 (367)
T ss_pred             ECCCCCCHHHHhHhcchHHHHHHHHHhcccCCCCCEEEEEC-CcHHHHHHHHHHHH-cCCCeEEEEeCCHHHHHHHHHhC
Confidence            999999999999999999999999854 5678999999995 89999999999999 5998 777778888999999999


Q ss_pred             CcEEEeCCCCcccc----C--CCCccEEEecCcc---HHHHHHhcccCCeEEEEcCCCC--C----------CceEEEE-
Q 016265          279 ADLAIDYTKDNFED----L--PEKFDVVYDAIGQ---CDRAVKAIKEGGTVVALTGAVT--P----------PGFRFVV-  336 (392)
Q Consensus       279 ~~~vi~~~~~~~~~----~--~~~~D~vid~~G~---~~~~~~~l~~~G~iv~~g~~~~--~----------~~~~~~~-  336 (392)
                      ++.++++++.++.+    .  ..++|++||++|.   ...++++++++|+++.++....  .          .+..+.. 
T Consensus       233 ~~~v~~~~~~~~~~~l~~~~~~~~~d~vld~vg~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~  312 (367)
T cd08263         233 ATHTVNAAKEDAVAAIREITGGRGVDVVVEALGKPETFKLALDVVRDGGRAVVVGLAPGGATAEIPITRLVRRGIKIIGS  312 (367)
T ss_pred             CceEecCCcccHHHHHHHHhCCCCCCEEEEeCCCHHHHHHHHHHHhcCCEEEEEccCCCCCccccCHHHHhhCCeEEEec
Confidence            99999987655422    1  3579999999873   4789999999999999975431  1          1111111 


Q ss_pred             --eecHHHHHHHHHHHHCCCcccccCCCcccchhhHHHHHHHHHhCCCCeeEEEE
Q 016265          337 --TSNGEVLKKLNPYLESGKVKPIIDPKGPFPFSQVVEAFSYIETNKATGKVVIH  389 (392)
Q Consensus       337 --~~~~~~~~~~~~~l~~g~l~~~~~~t~~~~l~~~~~A~~~l~~~~~~gKvvl~  389 (392)
                        ....+.+++++++++++.+++...+++.|+++++.+|++.+.+++..||+|+.
T Consensus       313 ~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~  367 (367)
T cd08263         313 YGARPRQDLPELVGLAASGKLDPEALVTHKYKLEEINEAYENLRKGLIHGRAIVE  367 (367)
T ss_pred             CCCCcHHHHHHHHHHHHcCCCCcccceeEEecHHHHHHHHHHHhcCCccceeeeC
Confidence              11136788999999999998764457889999999999999999888999874

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu

>cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases

Probab=100.00  E-value=2.3e-35  Score=288.68  Aligned_cols=299  Identities=22%  Similarity=0.295  Sum_probs=235.1

Q ss_pred             ceeEEEEcccCCcceEEEeccccCCCCCCCeEEEEEeEEecChHhHHhhcCCCCCCCCCCCCcCCCceeEEEEEeCCCCC
Q 016265           83 EMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVK  162 (392)
Q Consensus        83 ~mka~v~~~~~~~~~l~~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~~~p~v~G~e~~G~V~~vG~~v~  162 (392)
                      +||+.++.+.+..  ++++ +.|.|.+.++||+||+.++|||++|++.+.|.++   ..+|.++|||++|+|+++|++++
T Consensus         7 ~~~a~~~~~~~~~--~~l~-~~p~p~~~~~~vlvkv~~~gi~~~D~~~~~g~~~---~~~p~v~G~e~~G~V~~vG~~v~   80 (373)
T cd08299           7 KCKAAVLWEPKKP--FSIE-EIEVAPPKAHEVRIKIVATGICRSDDHVVSGKLV---TPFPVILGHEAAGIVESVGEGVT   80 (373)
T ss_pred             eeEEEEEecCCCC--cEEE-EeecCCCCCCEEEEEEEEEEcCcccHHHhcCCCC---CCCCccccccceEEEEEeCCCCc
Confidence            4899988776654  6777 8999999999999999999999999999988752   34688999999999999999999


Q ss_pred             CCCCCCEEEecccc------cccC----------------------------C-----CCCCCcceeEEEecCCceeeCC
Q 016265          163 EFKEGDEVYGDINE------KALE----------------------------G-----PKQFGSLAEYTAVEERLLAPKP  203 (392)
Q Consensus       163 ~~~vGdrV~~~~~~------~~~~----------------------------~-----~~~~G~~a~~~~v~~~~~~~iP  203 (392)
                      .+++||+|++....      ++..                            |     ....|+|+||++++.+.++++|
T Consensus        81 ~~~~Gd~V~~~~~~~c~~c~~c~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~e~~~v~~~~~~~lP  160 (373)
T cd08299          81 TVKPGDKVIPLFVPQCGKCRACLNPESNLCLKNDLGKPQGLMQDGTSRFTCKGKPIHHFLGTSTFSEYTVVDEIAVAKID  160 (373)
T ss_pred             cCCCCCEEEECCCCCCCCChhhhCCCcccCcCcccccccccccCCccccccCCcccccccCCCcccceEEecccceeeCC
Confidence            99999999875210      0000                            0     0025899999999999999999


Q ss_pred             CCCCHHhHhccchhHHHHHHHH-HhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCC-eEEEEeCCcccHHHHHhcCCcE
Q 016265          204 KNLDFVQAAGLPLAIETAYEGL-ERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGA-SRVAATSSTRNLEFLKSLGADL  281 (392)
Q Consensus       204 ~~l~~~~aa~l~~~~~ta~~al-~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~-~vv~~~~~~~~~~~~~~~G~~~  281 (392)
                      +++++++++.+++++.|||+++ ..+++++|++|+|+| +|++|++++++|+.. |+ ++++++++++|++.++++|+++
T Consensus       161 ~~l~~~~aa~~~~~~~ta~~~~~~~~~~~~g~~VlV~G-~g~vG~~~~~~a~~~-G~~~Vi~~~~~~~~~~~a~~lGa~~  238 (373)
T cd08299         161 AAAPLEKVCLIGCGFSTGYGAAVNTAKVTPGSTCAVFG-LGGVGLSAIMGCKAA-GASRIIAVDINKDKFAKAKELGATE  238 (373)
T ss_pred             CCCChHHhheeccchHHHHHHHHhccCCCCCCEEEEEC-CCHHHHHHHHHHHHc-CCCeEEEEcCCHHHHHHHHHcCCce
Confidence            9999999999999999999986 568899999999996 899999999999995 98 7888889999999999999999


Q ss_pred             EEeCCCCc--ccc-----CCCCccEEEecCcc---HHHHHHhc-ccCCeEEEEcCCCCCCce-----------EEE---E
Q 016265          282 AIDYTKDN--FED-----LPEKFDVVYDAIGQ---CDRAVKAI-KEGGTVVALTGAVTPPGF-----------RFV---V  336 (392)
Q Consensus       282 vi~~~~~~--~~~-----~~~~~D~vid~~G~---~~~~~~~l-~~~G~iv~~g~~~~~~~~-----------~~~---~  336 (392)
                      +++..+.+  +.+     ..+++|++|||+|.   +..++..+ +++|+++.+|.......+           .+.   .
T Consensus       239 ~i~~~~~~~~~~~~v~~~~~~~~d~vld~~g~~~~~~~~~~~~~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~~~~~  318 (373)
T cd08299         239 CINPQDYKKPIQEVLTEMTDGGVDFSFEVIGRLDTMKAALASCHEGYGVSVIVGVPPSSQNLSINPMLLLTGRTWKGAVF  318 (373)
T ss_pred             EecccccchhHHHHHHHHhCCCCeEEEECCCCcHHHHHHHHhhccCCCEEEEEccCCCCceeecCHHHHhcCCeEEEEEe
Confidence            99876432  211     13479999999983   45556654 579999999864321111           111   0


Q ss_pred             e--ecHHHHHHHHHHHHCCCcccccCCCcccchhhHHHHHHHHHhCCCCeeEEEEe
Q 016265          337 T--SNGEVLKKLNPYLESGKVKPIIDPKGPFPFSQVVEAFSYIETNKATGKVVIHP  390 (392)
Q Consensus       337 ~--~~~~~~~~~~~~l~~g~l~~~~~~t~~~~l~~~~~A~~~l~~~~~~gKvvl~~  390 (392)
                      .  .....+.++++.+.++.++....+++.|+++|+.+||+.+++++. .|+++.+
T Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~a~~~~~~~~~-~k~~~~~  373 (373)
T cd08299         319 GGWKSKDSVPKLVADYMAKKFNLDPLITHTLPFEKINEGFDLLRSGKS-IRTVLTF  373 (373)
T ss_pred             cCCccHHHHHHHHHHHHcCCCCchhheeeeecHHHHHHHHHHHhCCCc-ceEEEeC
Confidence            0  112456677777777776654446789999999999999987765 4888753

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically

>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2

Probab=100.00  E-value=2.8e-35  Score=284.82  Aligned_cols=296  Identities=27%  Similarity=0.380  Sum_probs=239.2

Q ss_pred             eeEEEEcccCCcceEEEeccccCCCCC-CCeEEEEEeEEecChHhHHhhcCCCCCCCCCCCCcCCCceeEEEEEeCCCCC
Q 016265           84 MKAWLYGEYGGVDVLKFDEKVTVPQVK-EDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVK  162 (392)
Q Consensus        84 mka~v~~~~~~~~~l~~~~~~~~p~~~-~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~~~p~v~G~e~~G~V~~vG~~v~  162 (392)
                      |||+++..++.   ++++ +.++|.|. ++||+|++.++++|+.|++...|.++   ..+|.++|||++|+|+++|++++
T Consensus         1 ~~a~~~~~~~~---~~~~-~~~~p~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~---~~~~~~~g~e~~G~V~~vG~~v~   73 (344)
T cd08284           1 MKAVVFKGPGD---VRVE-EVPIPQIQDPTDAIVKVTAAAICGSDLHIYRGHIP---STPGFVLGHEFVGEVVEVGPEVR   73 (344)
T ss_pred             CeeEEEecCCC---ceEE-eccCCCCCCCCeEEEEEEEeeccccchhhhcCCCC---CCCCcccccceEEEEEeeCCCcc
Confidence            68999976543   7888 89999985 99999999999999999999888764   33478899999999999999999


Q ss_pred             CCCCCCEEEecccccc------c----------------CCCCCCCcceeEEEecCC--ceeeCCCCCCHHhHhccchhH
Q 016265          163 EFKEGDEVYGDINEKA------L----------------EGPKQFGSLAEYTAVEER--LLAPKPKNLDFVQAAGLPLAI  218 (392)
Q Consensus       163 ~~~vGdrV~~~~~~~~------~----------------~~~~~~G~~a~~~~v~~~--~~~~iP~~l~~~~aa~l~~~~  218 (392)
                      ++++||+|++.....+      .                ......|+|++|+.++.+  .++++|+++++++++.+++++
T Consensus        74 ~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~~~p~~l~~~~a~~l~~~~  153 (344)
T cd08284          74 TLKVGDRVVSPFTIACGECFYCRRGQSGRCAKGGLFGYAGSPNLDGAQAEYVRVPFADGTLLKLPDGLSDEAALLLGDIL  153 (344)
T ss_pred             ccCCCCEEEEcccCCCCCChHHhCcCcccCCCCccccccccCCCCCceeEEEEcccccCceEECCCCCCHHHhhhhcCch
Confidence            9999999998531100      0                001125899999999865  999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCC-eEEEEeCCcccHHHHHhcCCcEEEeCCCCcccc----C
Q 016265          219 ETAYEGLERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGA-SRVAATSSTRNLEFLKSLGADLAIDYTKDNFED----L  293 (392)
Q Consensus       219 ~ta~~al~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~-~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~~----~  293 (392)
                      .|||+++....+.+|++|+|+| +|++|++++|+|+. .|+ ++++++.+++|.++++++|++ +++.+..++.+    .
T Consensus       154 ~ta~~~~~~~~~~~~~~vlI~g-~g~vg~~~~~~a~~-~g~~~v~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~l~~~  230 (344)
T cd08284         154 PTGYFGAKRAQVRPGDTVAVIG-CGPVGLCAVLSAQV-LGAARVFAVDPVPERLERAAALGAE-PINFEDAEPVERVREA  230 (344)
T ss_pred             HHHHhhhHhcCCccCCEEEEEC-CcHHHHHHHHHHHH-cCCceEEEEcCCHHHHHHHHHhCCe-EEecCCcCHHHHHHHH
Confidence            9999999878889999999996 89999999999999 596 677777788899999999975 46665544322    1


Q ss_pred             --CCCccEEEecCc---cHHHHHHhcccCCeEEEEcCCCCC-----------CceEEE--EeecHHHHHHHHHHHHCCCc
Q 016265          294 --PEKFDVVYDAIG---QCDRAVKAIKEGGTVVALTGAVTP-----------PGFRFV--VTSNGEVLKKLNPYLESGKV  355 (392)
Q Consensus       294 --~~~~D~vid~~G---~~~~~~~~l~~~G~iv~~g~~~~~-----------~~~~~~--~~~~~~~~~~~~~~l~~g~l  355 (392)
                        .+++|++||++|   .+..++++++++|+++.+|.....           ....+.  .......+++++++++++++
T Consensus       231 ~~~~~~dvvid~~~~~~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  310 (344)
T cd08284         231 TEGRGADVVLEAVGGAAALDLAFDLVRPGGVISSVGVHTAEEFPFPGLDAYNKNLTLRFGRCPVRSLFPELLPLLESGRL  310 (344)
T ss_pred             hCCCCCCEEEECCCCHHHHHHHHHhcccCCEEEEECcCCCCCccccHHHHhhcCcEEEEecCCcchhHHHHHHHHHcCCC
Confidence              357999999988   358899999999999999855411           112221  22345678999999999999


Q ss_pred             ccccCCCcccchhhHHHHHHHHHhCCCCeeEEEEe
Q 016265          356 KPIIDPKGPFPFSQVVEAFSYIETNKATGKVVIHP  390 (392)
Q Consensus       356 ~~~~~~t~~~~l~~~~~A~~~l~~~~~~gKvvl~~  390 (392)
                      ++...+++.|++++++++|+.+.+++. +|+|+.+
T Consensus       311 ~~~~~~~~~~~~~~~~~a~~~~~~~~~-~k~Vi~~  344 (344)
T cd08284         311 DLEFLIDHRMPLEEAPEAYRLFDKRKV-LKVVLDP  344 (344)
T ss_pred             ChHHhEeeeecHHHHHHHHHHHhcCCc-eEEEecC
Confidence            865445678999999999999998877 9999853

Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical

>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase

Probab=100.00  E-value=4.4e-35  Score=283.31  Aligned_cols=296  Identities=29%  Similarity=0.407  Sum_probs=240.4

Q ss_pred             eeEEEEcccCCcceEEEeccccCCCCCCCeEEEEEeEEecChHhHHhhcCCCCCCCCCCCCcCCCceeEEEEEeCCCCCC
Q 016265           84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKE  163 (392)
Q Consensus        84 mka~v~~~~~~~~~l~~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~~~p~v~G~e~~G~V~~vG~~v~~  163 (392)
                      |||+++++++.   +.++ +.+.|++.+++|+||+.++++|+.|+..+.|.++  ....|.++|+|++|+|+++|++++.
T Consensus         1 ~~~~~~~~~~~---~~~~-~~~~~~l~~~~v~i~v~~~~l~~~d~~~~~g~~~--~~~~~~~~g~~~~G~V~~~G~~v~~   74 (343)
T cd08235           1 MKAAVLHGPND---VRLE-EVPVPEPGPGEVLVKVRACGICGTDVKKIRGGHT--DLKPPRILGHEIAGEIVEVGDGVTG   74 (343)
T ss_pred             CeEEEEecCCc---eEEE-EccCCCCCCCeEEEEEEEeeeccccHHHHcCCCc--cCCCCcccccceEEEEEeeCCCCCC
Confidence            68999988764   7778 7899999999999999999999999999888653  2334678999999999999999999


Q ss_pred             CCCCCEEEecccccc------------------cCCCCCCCcceeEEEecCCc-----eeeCCCCCCHHhHhccchhHHH
Q 016265          164 FKEGDEVYGDINEKA------------------LEGPKQFGSLAEYTAVEERL-----LAPKPKNLDFVQAAGLPLAIET  220 (392)
Q Consensus       164 ~~vGdrV~~~~~~~~------------------~~~~~~~G~~a~~~~v~~~~-----~~~iP~~l~~~~aa~l~~~~~t  220 (392)
                      +++||+|++..+...                  ..+....|+|++|+.++.+.     ++++|+++++.+++.+ +++.+
T Consensus        75 ~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~~~~~~lP~~~~~~~aa~~-~~~~~  153 (343)
T cd08235          75 FKVGDRVFVAPHVPCGECHYCLRGNENMCPNYKKFGNLYDGGFAEYVRVPAWAVKRGGVLKLPDNVSFEEAALV-EPLAC  153 (343)
T ss_pred             CCCCCEEEEccCCCCCCChHHHCcCcccCCCcceeccCCCCcceeeEEecccccccccEEECCCCCCHHHHHhh-hHHHH
Confidence            999999998632100                  00112369999999999998     9999999999999766 78889


Q ss_pred             HHHHHHhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCe-EEEEeCCcccHHHHHhcCCcEEEeCCCCcccc----C--
Q 016265          221 AYEGLERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGAS-RVAATSSTRNLEFLKSLGADLAIDYTKDNFED----L--  293 (392)
Q Consensus       221 a~~al~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~-vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~~----~--  293 (392)
                      ||+++...++++|++|+|+| +|++|++++|+|+. .|++ +++++.++++.+.++++|.++++++++.++.+    .  
T Consensus       154 a~~~l~~~~~~~g~~VlV~g-~g~vg~~~~~la~~-~g~~~v~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~i~~~~~  231 (343)
T cd08235         154 CINAQRKAGIKPGDTVLVIG-AGPIGLLHAMLAKA-SGARKVIVSDLNEFRLEFAKKLGADYTIDAAEEDLVEKVRELTD  231 (343)
T ss_pred             HHHHHHhcCCCCCCEEEEEC-CCHHHHHHHHHHHH-cCCcEEEEECCCHHHHHHHHHhCCcEEecCCccCHHHHHHHHhC
Confidence            99999877899999999996 79999999999999 4999 77778888899999999999999887655422    1  


Q ss_pred             CCCccEEEecCc---cHHHHHHhcccCCeEEEEcCCCCC--C----------ceEE--EEeecHHHHHHHHHHHHCCCcc
Q 016265          294 PEKFDVVYDAIG---QCDRAVKAIKEGGTVVALTGAVTP--P----------GFRF--VVTSNGEVLKKLNPYLESGKVK  356 (392)
Q Consensus       294 ~~~~D~vid~~G---~~~~~~~~l~~~G~iv~~g~~~~~--~----------~~~~--~~~~~~~~~~~~~~~l~~g~l~  356 (392)
                      .+++|++|||+|   .+..++++++++|+++.++.....  .          .+.+  ......+.+++++++++++.++
T Consensus       232 ~~~vd~vld~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~  311 (343)
T cd08235         232 GRGADVVIVATGSPEAQAQALELVRKGGRILFFGGLPKGSTVNIDPNLIHYREITITGSYAASPEDYKEALELIASGKID  311 (343)
T ss_pred             CcCCCEEEECCCChHHHHHHHHHhhcCCEEEEEeccCCCCCcccCHHHHhhCceEEEEEecCChhhHHHHHHHHHcCCCC
Confidence            346999999987   357889999999999998754321  1          1111  1122456788899999999987


Q ss_pred             cccCCCcccchhhHHHHHHHHHhCCCCeeEEEE
Q 016265          357 PIIDPKGPFPFSQVVEAFSYIETNKATGKVVIH  389 (392)
Q Consensus       357 ~~~~~t~~~~l~~~~~A~~~l~~~~~~gKvvl~  389 (392)
                      +...+...|+++++.+|++.+.+++ .||+|++
T Consensus       312 ~~~~~~~~~~~~~~~~a~~~~~~~~-~~k~vi~  343 (343)
T cd08235         312 VKDLITHRFPLEDIEEAFELAADGK-SLKIVIT  343 (343)
T ss_pred             hHHheeeEeeHHHHHHHHHHHhCCC-cEEEEeC
Confidence            5323456899999999999999999 8999874

Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i

>cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family

Probab=100.00  E-value=5.5e-35  Score=280.73  Aligned_cols=297  Identities=31%  Similarity=0.450  Sum_probs=243.6

Q ss_pred             eeEEEEcccCCcceEEEeccccCCCCCCCeEEEEEeEEecChHhHHhhcCCCCCCCCCCCCcCCCceeEEEEEeCCCCCC
Q 016265           84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKE  163 (392)
Q Consensus        84 mka~v~~~~~~~~~l~~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~~~p~v~G~e~~G~V~~vG~~v~~  163 (392)
                      |||+++..++.  .+.++ +.+.|.+.++||+|++.++++|++|++.+.|.++.  ...|.++|||++|+|+++|++++.
T Consensus         1 m~a~~~~~~~~--~~~~~-~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~--~~~~~~~g~e~~G~v~~~G~~v~~   75 (332)
T cd08259           1 MKAAILHKPNK--PLQIE-EVPDPEPGPGEVLIKVKAAGVCYRDLLFWKGFFPR--GKYPLILGHEIVGTVEEVGEGVER   75 (332)
T ss_pred             CeEEEEecCCC--ceEEE-EccCCCCCCCeEEEEEEEEecchhhhHHhcCCCCC--CCCCeeccccceEEEEEECCCCcc
Confidence            78999976333  37787 89999999999999999999999999999887643  345789999999999999999999


Q ss_pred             CCCCCEEEecccccc------------------cCCCCCCCcceeEEEecCCceeeCCCCCCHHhHhccchhHHHHHHHH
Q 016265          164 FKEGDEVYGDINEKA------------------LEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGL  225 (392)
Q Consensus       164 ~~vGdrV~~~~~~~~------------------~~~~~~~G~~a~~~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~al  225 (392)
                      +++||+|++.....+                  ..+....|+|++|++++...++++|+++++++++.+++++.|||+++
T Consensus        76 ~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~~~~~~~~~~~~~~~ta~~~l  155 (332)
T cd08259          76 FKPGDRVILYYYIPCGKCEYCLSGEENLCRNRAEYGEEVDGGFAEYVKVPERSLVKLPDNVSDESAALAACVVGTAVHAL  155 (332)
T ss_pred             CCCCCEEEECCCCCCcCChhhhCCCcccCCCccccccccCCeeeeEEEechhheEECCCCCCHHHHhhhccHHHHHHHHH
Confidence            999999998642100                  01112368999999999999999999999999999999999999999


Q ss_pred             HhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCC--CccccCCCCccEEEec
Q 016265          226 ERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTK--DNFEDLPEKFDVVYDA  303 (392)
Q Consensus       226 ~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~--~~~~~~~~~~D~vid~  303 (392)
                      ..+.+.+|++|+|+|++|++|++++++++. .|++++++++++++.+.++++|.+.+++..+  ..+.+. .++|+++++
T Consensus       156 ~~~~~~~~~~vlI~ga~g~vG~~~~~~a~~-~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~d~v~~~  233 (332)
T cd08259         156 KRAGVKKGDTVLVTGAGGGVGIHAIQLAKA-LGARVIAVTRSPEKLKILKELGADYVIDGSKFSEDVKKL-GGADVVIEL  233 (332)
T ss_pred             HHhCCCCCCEEEEECCCCHHHHHHHHHHHH-cCCeEEEEeCCHHHHHHHHHcCCcEEEecHHHHHHHHhc-cCCCEEEEC
Confidence            778899999999999999999999999999 5999999888888999999999988887654  111112 279999999


Q ss_pred             Cc--cHHHHHHhcccCCeEEEEcCCCCC-C----------ceEE--EEeecHHHHHHHHHHHHCCCcccccCCCcccchh
Q 016265          304 IG--QCDRAVKAIKEGGTVVALTGAVTP-P----------GFRF--VVTSNGEVLKKLNPYLESGKVKPIIDPKGPFPFS  368 (392)
Q Consensus       304 ~G--~~~~~~~~l~~~G~iv~~g~~~~~-~----------~~~~--~~~~~~~~~~~~~~~l~~g~l~~~~~~t~~~~l~  368 (392)
                      +|  ....++++++++|+++.++..... .          ...+  ........++++++++++|.+++.  +++.|+++
T Consensus       234 ~g~~~~~~~~~~~~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~  311 (332)
T cd08259         234 VGSPTIEESLRSLNKGGRLVLIGNVTPDPAPLRPGLLILKEIRIIGSISATKADVEEALKLVKEGKIKPV--IDRVVSLE  311 (332)
T ss_pred             CChHHHHHHHHHhhcCCEEEEEcCCCCCCcCCCHHHHHhCCcEEEEecCCCHHHHHHHHHHHHcCCCccc--eeEEEcHH
Confidence            98  457899999999999998754311 0          1111  112346678899999999998765  56789999


Q ss_pred             hHHHHHHHHHhCCCCeeEEEE
Q 016265          369 QVVEAFSYIETNKATGKVVIH  389 (392)
Q Consensus       369 ~~~~A~~~l~~~~~~gKvvl~  389 (392)
                      ++++||+.+.+++..||++++
T Consensus       312 ~~~~a~~~~~~~~~~~kvv~~  332 (332)
T cd08259         312 DINEALEDLKSGKVVGRIVLK  332 (332)
T ss_pred             HHHHHHHHHHcCCcccEEEeC
Confidence            999999999999888999874

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES.

>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH)

Probab=100.00  E-value=5.1e-35  Score=286.57  Aligned_cols=296  Identities=24%  Similarity=0.331  Sum_probs=235.7

Q ss_pred             eeEEEEcccCCcceEEEeccccCCCC-CCCeEEEEEeEEecChHhHHhhcCCCCCCCCCCCCcCCCceeEEEEEeCCCCC
Q 016265           84 MKAWLYGEYGGVDVLKFDEKVTVPQV-KEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVK  162 (392)
Q Consensus        84 mka~v~~~~~~~~~l~~~~~~~~p~~-~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~~~p~v~G~e~~G~V~~vG~~v~  162 (392)
                      ||++++.+++.   ++++ ++++|.+ +++||+||+.++++|++|++.+.|.++   ..+|.++|||++|+|+++|+++.
T Consensus         1 m~~~~~~~~~~---~~~~-~~~~p~~~~~~evlv~v~a~~i~~~D~~~~~g~~~---~~~p~~~g~e~~G~V~~vG~~v~   73 (375)
T cd08282           1 MKAVVYGGPGN---VAVE-DVPDPKIEHPTDAIVRITTTAICGSDLHMYRGRTG---AEPGLVLGHEAMGEVEEVGSAVE   73 (375)
T ss_pred             CceEEEecCCc---eeEE-eCCCCCCCCCCeEEEEEEEEeeCHHHHHHHcCCCC---CCCCceeccccEEEEEEeCCCCC
Confidence            68999976653   7888 8999986 799999999999999999999988764   34588999999999999999999


Q ss_pred             CCCCCCEEEeccccccc------C----------------------CCCCCCcceeEEEecCC--ceeeCCCCCCHH---
Q 016265          163 EFKEGDEVYGDINEKAL------E----------------------GPKQFGSLAEYTAVEER--LLAPKPKNLDFV---  209 (392)
Q Consensus       163 ~~~vGdrV~~~~~~~~~------~----------------------~~~~~G~~a~~~~v~~~--~~~~iP~~l~~~---  209 (392)
                      .+++||+|++.....+.      .                      ....+|+|++|+.++..  .++++|++++++   
T Consensus        74 ~~~~Gd~V~~~~~~~~g~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~~~lP~~~~~~~~~  153 (375)
T cd08282          74 SLKVGDRVVVPFNVACGRCRNCKRGLTGVCLTVNPGRAGGAYGYVDMGPYGGGQAEYLRVPYADFNLLKLPDRDGAKEKD  153 (375)
T ss_pred             cCCCCCEEEEeCCCCCCCCHHHHCcCcccCCCCCcccccccccccccCCCCCeeeeEEEeecccCcEEECCCCCChhhhh
Confidence            99999999873221000      0                      01125899999999976  899999999998   


Q ss_pred             hHhccchhHHHHHHHHHhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCC-eEEEEeCCcccHHHHHhcCCcEEEeCCCC
Q 016265          210 QAAGLPLAIETAYEGLERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGA-SRVAATSSTRNLEFLKSLGADLAIDYTKD  288 (392)
Q Consensus       210 ~aa~l~~~~~ta~~al~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~-~vv~~~~~~~~~~~~~~~G~~~vi~~~~~  288 (392)
                      +++.++.++.|||+++..+++++|++|+|.| +|++|++++|+|+++ |+ ++++++.+++|+++++++|+ ..+++.+.
T Consensus       154 ~~a~~~~~~~ta~~a~~~~~~~~g~~vlI~g-~g~vg~~~~~~a~~~-G~~~vi~~~~~~~~~~~~~~~g~-~~v~~~~~  230 (375)
T cd08282         154 DYLMLSDIFPTGWHGLELAGVQPGDTVAVFG-AGPVGLMAAYSAILR-GASRVYVVDHVPERLDLAESIGA-IPIDFSDG  230 (375)
T ss_pred             heeeecchHHHHHHHHHhcCCCCCCEEEEEC-CCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHHHcCC-eEeccCcc
Confidence            4677788889999999888899999999976 799999999999984 97 67787788999999999998 45676654


Q ss_pred             cccc-----CCCCccEEEecCcc--------------HHHHHHhcccCCeEEEEcCCCCC-------------CceEE--
Q 016265          289 NFED-----LPEKFDVVYDAIGQ--------------CDRAVKAIKEGGTVVALTGAVTP-------------PGFRF--  334 (392)
Q Consensus       289 ~~~~-----~~~~~D~vid~~G~--------------~~~~~~~l~~~G~iv~~g~~~~~-------------~~~~~--  334 (392)
                      ++.+     ..+++|++|||+|.              ++.++++++++|+++.+|.....             ..+.+  
T Consensus       231 ~~~~~i~~~~~~~~d~v~d~~g~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  310 (375)
T cd08282         231 DPVEQILGLEPGGVDRAVDCVGYEARDRGGEAQPNLVLNQLIRVTRPGGGIGIVGVYVAEDPGAGDAAAKQGELSFDFGL  310 (375)
T ss_pred             cHHHHHHHhhCCCCCEEEECCCCcccccccccchHHHHHHHHHHhhcCcEEEEEeccCCcccccccccccCccccccHHH
Confidence            4321     13479999999872              57899999999999887653210             00110  


Q ss_pred             ----------EEeecHHHHHHHHHHHHCCCcccccCCCcccchhhHHHHHHHHHhCCCCeeEEEEe
Q 016265          335 ----------VVTSNGEVLKKLNPYLESGKVKPIIDPKGPFPFSQVVEAFSYIETNKATGKVVIHP  390 (392)
Q Consensus       335 ----------~~~~~~~~~~~~~~~l~~g~l~~~~~~t~~~~l~~~~~A~~~l~~~~~~gKvvl~~  390 (392)
                                ........+.+++++++++++++...+++.|+++++++||+.+.++. .+|+|+++
T Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~l~~~~~a~~~~~~~~-~~kvvv~~  375 (375)
T cd08282         311 LWAKGLSFGTGQAPVKKYNRQLRDLILAGRAKPSFVVSHVISLEDAPEAYARFDKRL-ETKVVIKP  375 (375)
T ss_pred             HHhcCcEEEEecCCchhhHHHHHHHHHcCCCChHHcEEEEeeHHHHHHHHHHHhcCC-ceEEEeCC
Confidence                      00113456788899999999987544678999999999999999988 89999864

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo

>cd05280 MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone oxidoreductases

Probab=100.00  E-value=7.3e-35  Score=279.19  Aligned_cols=296  Identities=28%  Similarity=0.372  Sum_probs=234.9

Q ss_pred             eeEEEEcccCCcceEEEeccccCCCCCCCeEEEEEeEEecChHhHHhhcCCCCCCCCCCCCcCCCceeEEEEEeCCCCCC
Q 016265           84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKE  163 (392)
Q Consensus        84 mka~v~~~~~~~~~l~~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~~~p~v~G~e~~G~V~~vG~~v~~  163 (392)
                      |||++++.+++.+.++++ +.+.|.++++||+|++.++++|++|++.+.|.++. ...+|.++|||++|+|+++  +++.
T Consensus         1 ~~a~~~~~~~~~~~~~~~-~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~-~~~~~~~~g~e~~G~v~~~--~~~~   76 (325)
T cd05280           1 FKALVVEEQDGGVSLFLR-TLPLDDLPEGDVLIRVHYSSLNYKDALAATGNGGV-TRNYPHTPGIDAAGTVVSS--DDPR   76 (325)
T ss_pred             CceEEEcccCCCCcceEE-eCCCCCCCCCeEEEEEEEeecChHHHHHhcCCCCC-CCCCCCccCcccEEEEEEe--CCCC
Confidence            799999998875568888 89999999999999999999999999999887542 2345788999999999999  4678


Q ss_pred             CCCCCEEEecccccccCCCCCCCcceeEEEecCCceeeCCCCCCHHhHhccchhHHHHHHHHHh---cCCC-CCCeEEEE
Q 016265          164 FKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLER---TGFS-AGKSILVL  239 (392)
Q Consensus       164 ~~vGdrV~~~~~~~~~~~~~~~G~~a~~~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~al~~---~~~~-~g~~VlI~  239 (392)
                      +++||+|++....   .|....|+|++|+.++.+.++++|+++++++++.+++++.|+|+++..   .++. .+++|+|+
T Consensus        77 ~~~Gd~V~~~~~~---~g~~~~g~~~~~~~v~~~~~~~lp~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~~vlI~  153 (325)
T cd05280          77 FREGDEVLVTGYD---LGMNTDGGFAEYVRVPADWVVPLPEGLSLREAMILGTAGFTAALSVHRLEDNGQTPEDGPVLVT  153 (325)
T ss_pred             CCCCCEEEEcccc---cCCCCCceeEEEEEEchhhEEECCCCCCHHHHHhhHHHHHHHHHHHHHHhhccCCCCCCEEEEE
Confidence            9999999986321   122236899999999999999999999999999999999999998854   3345 35799999


Q ss_pred             cCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCCc--ccc--CCCCccEEEecCc--cHHHHHHh
Q 016265          240 NGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDN--FED--LPEKFDVVYDAIG--QCDRAVKA  313 (392)
Q Consensus       240 Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~--~~~--~~~~~D~vid~~G--~~~~~~~~  313 (392)
                      |++|++|++++|+|+.+ |+++++++.++++++.++++|++++++..+..  ...  ..+++|++||++|  .+..++++
T Consensus       154 g~~g~vg~~~~~~a~~~-g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~~~~~~~~~  232 (325)
T cd05280         154 GATGGVGSIAVAILAKL-GYTVVALTGKEEQADYLKSLGASEVLDREDLLDESKKPLLKARWAGAIDTVGGDVLANLLKQ  232 (325)
T ss_pred             CCccHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHhcCCcEEEcchhHHHHHHHHhcCCCccEEEECCchHHHHHHHHh
Confidence            98899999999999995 99999999999999999999999998875432  111  1347999999998  46899999


Q ss_pred             cccCCeEEEEcCCCCC-C----------ceEEE---Ee-e----cHHHHHHHHHHHHCCCcccccCCCcccchhhHHHHH
Q 016265          314 IKEGGTVVALTGAVTP-P----------GFRFV---VT-S----NGEVLKKLNPYLESGKVKPIIDPKGPFPFSQVVEAF  374 (392)
Q Consensus       314 l~~~G~iv~~g~~~~~-~----------~~~~~---~~-~----~~~~~~~~~~~l~~g~l~~~~~~t~~~~l~~~~~A~  374 (392)
                      ++++|+++.+|..... .          +..+.   .. .    ....++.+.+++..+... .  +.+.|+++++++|+
T Consensus       233 l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~a~  309 (325)
T cd05280         233 TKYGGVVASCGNAAGPELTTTVLPFILRGVSLLGIDSVNCPMELRKQVWQKLATEWKPDLLE-I--VVREISLEELPEAI  309 (325)
T ss_pred             hcCCCEEEEEecCCCCccccccchheeeeeEEEEEEeecCchhHHHHHHHHHHHHHhcCCcc-c--eeeEecHHHHHHHH
Confidence            9999999999864311 0          11111   01 0    113345555566666333 2  45789999999999


Q ss_pred             HHHHhCCCCeeEEEEe
Q 016265          375 SYIETNKATGKVVIHP  390 (392)
Q Consensus       375 ~~l~~~~~~gKvvl~~  390 (392)
                      +.+.+++..||+|+++
T Consensus       310 ~~~~~~~~~gk~vv~~  325 (325)
T cd05280         310 DRLLAGKHRGRTVVKI  325 (325)
T ss_pred             HHHhcCCcceEEEEeC
Confidence            9999999899999863

Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and so

>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family

Probab=100.00  E-value=7.9e-35  Score=281.90  Aligned_cols=299  Identities=28%  Similarity=0.418  Sum_probs=245.0

Q ss_pred             eeEEEEcccCCcceEEEeccccCCCCCCCeEEEEEeEEecChHhHHhhcCCCCCCCCCCCCcCCCceeEEEEEeCCCCCC
Q 016265           84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKE  163 (392)
Q Consensus        84 mka~v~~~~~~~~~l~~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~~~p~v~G~e~~G~V~~vG~~v~~  163 (392)
                      ||||++.+++.+  +++. +.+.|.+.++||+||+.++++|+.|+..+.|.++.  ..+|.++|||++|+|+++|+++..
T Consensus         1 m~a~~~~~~~~~--~~~~-~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~--~~~~~~~g~e~~G~V~~~G~~~~~   75 (345)
T cd08260           1 MRAAVYEEFGEP--LEIR-EVPDPEPPPDGVVVEVEACGVCRSDWHGWQGHDPD--VTLPHVPGHEFAGVVVEVGEDVSR   75 (345)
T ss_pred             CeeEEEecCCCC--cEEE-EccCCCCCCCeEEEEEEEeeccHHHHHHhcCCCCC--CCCCeeeccceeEEEEEECCCCcc
Confidence            799999887765  6777 88999999999999999999999999998887642  345789999999999999999999


Q ss_pred             CCCCCEEEecccc------cc------------cCCCCCCCcceeEEEecCC--ceeeCCCCCCHHhHhccchhHHHHHH
Q 016265          164 FKEGDEVYGDINE------KA------------LEGPKQFGSLAEYTAVEER--LLAPKPKNLDFVQAAGLPLAIETAYE  223 (392)
Q Consensus       164 ~~vGdrV~~~~~~------~~------------~~~~~~~G~~a~~~~v~~~--~~~~iP~~l~~~~aa~l~~~~~ta~~  223 (392)
                      +++||+|++....      .+            ..+...+|+|++|+.++..  .++++|+++++++++.+++++.|||+
T Consensus        76 ~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~~iP~~~~~~~aa~l~~~~~ta~~  155 (345)
T cd08260          76 WRVGDRVTVPFVLGCGTCPYCRAGDSNVCEHQVQPGFTHPGSFAEYVAVPRADVNLVRLPDDVDFVTAAGLGCRFATAFR  155 (345)
T ss_pred             CCCCCEEEECCCCCCCCCccccCcCcccCCCCcccccCCCCcceeEEEcccccCceEECCCCCCHHHhhhhccchHHHHH
Confidence            9999999872100      00            0112236999999999975  89999999999999999999999999


Q ss_pred             HH-HhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCC-Ccccc----C-CCC
Q 016265          224 GL-ERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTK-DNFED----L-PEK  296 (392)
Q Consensus       224 al-~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~-~~~~~----~-~~~  296 (392)
                      ++ +..++.+|++|+|+| +|++|++++|+|+. .|+++++++.++++.+.++++|++.++++++ .++.+    . .++
T Consensus       156 ~l~~~~~~~~~~~vlV~g-~g~vg~~~~~~a~~-~G~~vi~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~  233 (345)
T cd08260         156 ALVHQARVKPGEWVAVHG-CGGVGLSAVMIASA-LGARVIAVDIDDDKLELARELGAVATVNASEVEDVAAAVRDLTGGG  233 (345)
T ss_pred             HHHHccCCCCCCEEEEEC-CCHHHHHHHHHHHH-cCCeEEEEeCCHHHHHHHHHhCCCEEEccccchhHHHHHHHHhCCC
Confidence            98 467889999999999 89999999999999 5999999999999999999999999999876 44322    1 237


Q ss_pred             ccEEEecCc---cHHHHHHhcccCCeEEEEcCCCCC---Cc----------eEEEE--eecHHHHHHHHHHHHCCCcccc
Q 016265          297 FDVVYDAIG---QCDRAVKAIKEGGTVVALTGAVTP---PG----------FRFVV--TSNGEVLKKLNPYLESGKVKPI  358 (392)
Q Consensus       297 ~D~vid~~G---~~~~~~~~l~~~G~iv~~g~~~~~---~~----------~~~~~--~~~~~~~~~~~~~l~~g~l~~~  358 (392)
                      +|++|||+|   ....++++++++|+++.+|.....   ..          +.+..  ......+++++++++++++.+.
T Consensus       234 ~d~vi~~~g~~~~~~~~~~~l~~~g~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~~  313 (345)
T cd08260         234 AHVSVDALGIPETCRNSVASLRKRGRHVQVGLTLGEEAGVALPMDRVVARELEIVGSHGMPAHRYDAMLALIASGKLDPE  313 (345)
T ss_pred             CCEEEEcCCCHHHHHHHHHHhhcCCEEEEeCCcCCCCCccccCHHHHhhcccEEEeCCcCCHHHHHHHHHHHHcCCCChh
Confidence            999999997   357889999999999999754311   11          11111  1234678899999999998865


Q ss_pred             cCCCcccchhhHHHHHHHHHhCCCCeeEEEE
Q 016265          359 IDPKGPFPFSQVVEAFSYIETNKATGKVVIH  389 (392)
Q Consensus       359 ~~~t~~~~l~~~~~A~~~l~~~~~~gKvvl~  389 (392)
                      ..+++.|+++++++||+.+.++...||+|++
T Consensus       314 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~v~~  344 (345)
T cd08260         314 PLVGRTISLDEAPDALAAMDDYATAGITVIT  344 (345)
T ss_pred             hheeEEecHHHHHHHHHHHHcCCCCceEEec
Confidence            4456789999999999999999988998864

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty

>cd08249 enoyl_reductase_like enoyl_reductase_like

Probab=100.00  E-value=4.7e-35  Score=282.99  Aligned_cols=297  Identities=34%  Similarity=0.478  Sum_probs=240.3

Q ss_pred             eeEEEEcccCCcceEEEeccccCCCCCCCeEEEEEeEEecChHhHHhhcCCCCCCCCCCCCcCCCceeEEEEEeCCCCCC
Q 016265           84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKE  163 (392)
Q Consensus        84 mka~v~~~~~~~~~l~~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~~~p~v~G~e~~G~V~~vG~~v~~  163 (392)
                      |||++++.++ +..++++ +.+.|+|+++||+||+.++++|++|++.+.+.+   ...+|.++|||++|+|+.+|++++.
T Consensus         1 m~a~~~~~~~-~~~~~~~-~~~~p~~~~~ev~i~v~~~~i~~~d~~~~~~~~---~~~~~~~~g~e~~G~v~~vG~~v~~   75 (339)
T cd08249           1 QKAAVLTGPG-GGLLVVV-DVPVPKPGPDEVLVKVKAVALNPVDWKHQDYGF---IPSYPAILGCDFAGTVVEVGSGVTR   75 (339)
T ss_pred             CceEEeccCC-CCccccc-CCCCCCCCCCEEEEEEEEEEcCchheeeeeccc---ccCCCceeeeeeeEEEEEeCCCcCc
Confidence            7899999886 5558888 899999999999999999999999998775543   1224678999999999999999999


Q ss_pred             CCCCCEEEecccccccCCCCCCCcceeEEEecCCceeeCCCCCCHHhHhccchhHHHHHHHHHh-cC----------CCC
Q 016265          164 FKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLER-TG----------FSA  232 (392)
Q Consensus       164 ~~vGdrV~~~~~~~~~~~~~~~G~~a~~~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~al~~-~~----------~~~  232 (392)
                      +++||+|++.....+ .+...+|+|++|+.++.+.++++|+++++++++.+++++.|||+++.. .+          ..+
T Consensus        76 ~~~Gd~V~~~~~~~~-~~~~~~g~~~~~~~v~~~~~~~ip~~~~~~~~~~~~~~~~ta~~~l~~~~~~~~~~~~~~~~~~  154 (339)
T cd08249          76 FKVGDRVAGFVHGGN-PNDPRNGAFQEYVVADADLTAKIPDNISFEEAATLPVGLVTAALALFQKLGLPLPPPKPSPASK  154 (339)
T ss_pred             CCCCCEEEEEecccc-CCCCCCCcccceEEechhheEECCCCCCHHHceecchHHHHHHHHHhccccCCCCCCCCCCCCC
Confidence            999999998643111 122236999999999999999999999999999999999999999853 33          378


Q ss_pred             CCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCCcccc-----CCCCccEEEecCcc-
Q 016265          233 GKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFED-----LPEKFDVVYDAIGQ-  306 (392)
Q Consensus       233 g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~~-----~~~~~D~vid~~G~-  306 (392)
                      |++|+|+|++|++|++++++|+. .|++++.++ +++|++.++++|+++++++....+.+     ..+++|++||++|. 
T Consensus       155 ~~~vlI~ga~g~vg~~~~~~a~~-~G~~v~~~~-~~~~~~~~~~~g~~~v~~~~~~~~~~~l~~~~~~~~d~vl~~~g~~  232 (339)
T cd08249         155 GKPVLIWGGSSSVGTLAIQLAKL-AGYKVITTA-SPKNFDLVKSLGADAVFDYHDPDVVEDIRAATGGKLRYALDCISTP  232 (339)
T ss_pred             CCEEEEEcChhHHHHHHHHHHHH-cCCeEEEEE-CcccHHHHHhcCCCEEEECCCchHHHHHHHhcCCCeeEEEEeeccc
Confidence            99999999889999999999999 599988777 56899999999999999987655422     24579999999874 


Q ss_pred             --HHHHHHhccc--CCeEEEEcCCCCC----CceE--E-EE-----------eecHHHHHHHHHHHHCCCcccccCCCcc
Q 016265          307 --CDRAVKAIKE--GGTVVALTGAVTP----PGFR--F-VV-----------TSNGEVLKKLNPYLESGKVKPIIDPKGP  364 (392)
Q Consensus       307 --~~~~~~~l~~--~G~iv~~g~~~~~----~~~~--~-~~-----------~~~~~~~~~~~~~l~~g~l~~~~~~t~~  364 (392)
                        +..+++++++  +|+++.++.....    ....  . ..           ......+++++++++++++.+...  ..
T Consensus       233 ~~~~~~~~~l~~~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~  310 (339)
T cd08249         233 ESAQLCAEALGRSGGGKLVSLLPVPEETEPRKGVKVKFVLGYTVFGEIPEDREFGEVFWKYLPELLEEGKLKPHPV--RV  310 (339)
T ss_pred             hHHHHHHHHHhccCCCEEEEecCCCccccCCCCceEEEEEeeeecccccccccchHHHHHHHHHHHHcCCccCCCc--ee
Confidence              5889999999  9999999765321    1111  1 00           011245778899999999887533  45


Q ss_pred             cc--hhhHHHHHHHHHhCC-CCeeEEEEe
Q 016265          365 FP--FSQVVEAFSYIETNK-ATGKVVIHP  390 (392)
Q Consensus       365 ~~--l~~~~~A~~~l~~~~-~~gKvvl~~  390 (392)
                      ++  ++++++||+.+.+++ ..+|+|+++
T Consensus       311 ~~~~~~~~~~a~~~~~~~~~~~~kvvv~~  339 (339)
T cd08249         311 VEGGLEGVQEGLDLLRKGKVSGEKLVVRL  339 (339)
T ss_pred             cCCcHHHHHHHHHHHHCCCccceEEEEeC
Confidence            66  999999999999998 889999864

Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol de

>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases

Probab=100.00  E-value=4.5e-35  Score=285.97  Aligned_cols=295  Identities=26%  Similarity=0.354  Sum_probs=236.8

Q ss_pred             eEEEEcccCCcceEEEeccccCCCCCCCeEEEEEeEEecChHhHHhhcCCCCCCCCCCCCcCCCceeEEEEEeCCCCCCC
Q 016265           85 KAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKEF  164 (392)
Q Consensus        85 ka~v~~~~~~~~~l~~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~~~p~v~G~e~~G~V~~vG~~v~~~  164 (392)
                      ||+++.+.+..  ++++ +.+.|.++++||+|++.++++|++|++.+.|.++   ..+|.++|||++|+|+++|++++.+
T Consensus         2 ~a~~~~~~~~~--~~~~-~~~~p~~~~~~vlv~v~~~~i~~~d~~~~~g~~~---~~~~~i~g~e~~G~V~~vG~~v~~~   75 (365)
T cd05279           2 KAAVLWEKGKP--LSIE-EIEVAPPKAGEVRIKVVATGVCHTDLHVIDGKLP---TPLPVILGHEGAGIVESIGPGVTTL   75 (365)
T ss_pred             ceeEEecCCCC--cEEE-EeecCCCCCCeEEEEEEEeeecchhHHHhcCCCC---CCCCcccccceeEEEEEeCCCcccC
Confidence            67888776654  7777 8999999999999999999999999999988753   3457899999999999999999999


Q ss_pred             CCCCEEEecccccc------cC---------------C------------------CCCCCcceeEEEecCCceeeCCCC
Q 016265          165 KEGDEVYGDINEKA------LE---------------G------------------PKQFGSLAEYTAVEERLLAPKPKN  205 (392)
Q Consensus       165 ~vGdrV~~~~~~~~------~~---------------~------------------~~~~G~~a~~~~v~~~~~~~iP~~  205 (392)
                      ++||+|++.....+      ..               |                  ....|+|++|+.++.+.++++|++
T Consensus        76 ~~Gd~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~a~~~~v~~~~~~~lP~~  155 (365)
T cd05279          76 KPGDKVIPLFGPQCGKCKQCLNPRPNLCSKSRGTNGRGLMSDGTSRFTCKGKPIHHFLGTSTFAEYTVVSEISLAKIDPD  155 (365)
T ss_pred             CCCCEEEEcCCCCCCCChhhcCCCcccCCCcccccccccccCCcceeeccCCccccccccccccceEEecCCceEECCCC
Confidence            99999987632100      00               0                  002378999999999999999999


Q ss_pred             CCHHhHhccchhHHHHHHHH-HhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeE-EEEeCCcccHHHHHhcCCcEEE
Q 016265          206 LDFVQAAGLPLAIETAYEGL-ERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASR-VAATSSTRNLEFLKSLGADLAI  283 (392)
Q Consensus       206 l~~~~aa~l~~~~~ta~~al-~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~v-v~~~~~~~~~~~~~~~G~~~vi  283 (392)
                      +++++++.+++++.+||+++ +.+++++|++|||+| +|++|++++|+|+.+ |+++ ++++++++|++.++++|+++++
T Consensus       156 ~~~~~a~~~~~~~~ta~~al~~~~~~~~g~~vlI~g-~g~vG~~a~~~a~~~-G~~~v~~~~~~~~~~~~~~~~g~~~~v  233 (365)
T cd05279         156 APLEKVCLIGCGFSTGYGAAVNTAKVTPGSTCAVFG-LGGVGLSVIMGCKAA-GASRIIAVDINKDKFEKAKQLGATECI  233 (365)
T ss_pred             CCHHHhhHhccchhHHHHHHHhccCCCCCCEEEEEC-CCHHHHHHHHHHHHc-CCCeEEEEeCCHHHHHHHHHhCCCeec
Confidence            99999999999999999987 567899999999996 899999999999995 9874 5556689999999999999999


Q ss_pred             eCCCC--cccc-----CCCCccEEEecCcc---HHHHHHhcc-cCCeEEEEcCCCC--CCce---------EEEEe----
Q 016265          284 DYTKD--NFED-----LPEKFDVVYDAIGQ---CDRAVKAIK-EGGTVVALTGAVT--PPGF---------RFVVT----  337 (392)
Q Consensus       284 ~~~~~--~~~~-----~~~~~D~vid~~G~---~~~~~~~l~-~~G~iv~~g~~~~--~~~~---------~~~~~----  337 (392)
                      +..+.  ++.+     ..+++|++||++|.   +..++++++ ++|+++.+|....  ...+         .+.-.    
T Consensus       234 ~~~~~~~~~~~~l~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~l~g~~~~~  313 (365)
T cd05279         234 NPRDQDKPIVEVLTEMTDGGVDYAFEVIGSADTLKQALDATRLGGGTSVVVGVPPSGTEATLDPNDLLTGRTIKGTVFGG  313 (365)
T ss_pred             ccccccchHHHHHHHHhCCCCcEEEECCCCHHHHHHHHHHhccCCCEEEEEecCCCCCceeeCHHHHhcCCeEEEEeccC
Confidence            87665  3211     24579999999973   578899999 9999999875431  1111         10001    


Q ss_pred             -ecHHHHHHHHHHHHCCCcccccCCCcccchhhHHHHHHHHHhCCCCeeEEE
Q 016265          338 -SNGEVLKKLNPYLESGKVKPIIDPKGPFPFSQVVEAFSYIETNKATGKVVI  388 (392)
Q Consensus       338 -~~~~~~~~~~~~l~~g~l~~~~~~t~~~~l~~~~~A~~~l~~~~~~gKvvl  388 (392)
                       ...+.+.+++++++++.+++....++.|+++++++||+.+++++.. |+++
T Consensus       314 ~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~l~~~~~a~~~~~~~~~~-~~~~  364 (365)
T cd05279         314 WKSKDSVPKLVALYRQKKFPLDELITHVLPFEEINDGFDLMRSGESI-RTIL  364 (365)
T ss_pred             CchHhHHHHHHHHHHcCCcchhHheeeeecHHHHHHHHHHHhCCCce-eeee
Confidence             2356788899999999988654567899999999999999877654 7665

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall

>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family

Probab=100.00  E-value=1.2e-34  Score=279.86  Aligned_cols=297  Identities=31%  Similarity=0.410  Sum_probs=239.8

Q ss_pred             eeEEEEcccCCcceEEEeccccCCCCCCCeEEEEEeEEecChHhHHhhcCCCCCCCCCCCCcCCCceeEEEEEeCCCCCC
Q 016265           84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKE  163 (392)
Q Consensus        84 mka~v~~~~~~~~~l~~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~~~p~v~G~e~~G~V~~vG~~v~~  163 (392)
                      |||+++++++.   +++. +.+.|.++++||+|++.++++|+.|+....|.++.  ..+|.++|+|++|+|+++|++++.
T Consensus         1 ~~a~~~~~~~~---~~~~-~~~~~~~~~~~v~v~v~~~~l~~~d~~~~~~~~~~--~~~~~~~g~e~~G~V~~~G~~v~~   74 (337)
T cd08261           1 MKALVCEKPGR---LEVV-DIPEPVPGAGEVLVRVKRVGICGSDLHIYHGRNPF--ASYPRILGHELSGEVVEVGEGVAG   74 (337)
T ss_pred             CeEEEEeCCCc---eEEE-ECCCCCCCCCeEEEEEEEEeEcccChHHHcCCCCc--CCCCcccccccEEEEEEeCCCCCC
Confidence            68999987653   7788 89999999999999999999999999998887543  245788999999999999999999


Q ss_pred             CCCCCEEEeccccc---cc---------------CCCCCCCcceeEEEecCCceeeCCCCCCHHhHhccchhHHHHHHHH
Q 016265          164 FKEGDEVYGDINEK---AL---------------EGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGL  225 (392)
Q Consensus       164 ~~vGdrV~~~~~~~---~~---------------~~~~~~G~~a~~~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~al  225 (392)
                      +++||+|++.....   +.               .+....|+|++|+.++++ ++++|+++++++++.+ ..+.++++++
T Consensus        75 ~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~-~~~~p~~~~~~~aa~~-~~~~~a~~~~  152 (337)
T cd08261          75 LKVGDRVVVDPYISCGECYACRKGRPNCCENLQVLGVHRDGGFAEYIVVPAD-ALLVPEGLSLDQAALV-EPLAIGAHAV  152 (337)
T ss_pred             CCCCCEEEECCCCCCCCChhhhCcCcccCCCCCeeeecCCCcceeEEEechh-eEECCCCCCHHHhhhh-chHHHHHHHH
Confidence            99999999732100   00               001136899999999999 9999999999999876 5667888888


Q ss_pred             HhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCCcccc----C--CCCccE
Q 016265          226 ERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFED----L--PEKFDV  299 (392)
Q Consensus       226 ~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~~----~--~~~~D~  299 (392)
                      +..++++|++|||+| +|.+|++++|+|+.+ |++++++++++++.++++++|+++++++.+.++.+    .  .+++|+
T Consensus       153 ~~~~l~~g~~vLI~g-~g~vG~~a~~lA~~~-g~~v~~~~~s~~~~~~~~~~g~~~v~~~~~~~~~~~l~~~~~~~~vd~  230 (337)
T cd08261         153 RRAGVTAGDTVLVVG-AGPIGLGVIQVAKAR-GARVIVVDIDDERLEFARELGADDTINVGDEDVAARLRELTDGEGADV  230 (337)
T ss_pred             HhcCCCCCCEEEEEC-CCHHHHHHHHHHHHc-CCeEEEECCCHHHHHHHHHhCCCEEecCcccCHHHHHHHHhCCCCCCE
Confidence            778899999999996 799999999999994 99999998999999999999999999987654322    1  346999


Q ss_pred             EEecCcc---HHHHHHhcccCCeEEEEcCCCCC----------CceEEEE--eecHHHHHHHHHHHHCCCcccccCCCcc
Q 016265          300 VYDAIGQ---CDRAVKAIKEGGTVVALTGAVTP----------PGFRFVV--TSNGEVLKKLNPYLESGKVKPIIDPKGP  364 (392)
Q Consensus       300 vid~~G~---~~~~~~~l~~~G~iv~~g~~~~~----------~~~~~~~--~~~~~~~~~~~~~l~~g~l~~~~~~t~~  364 (392)
                      +|||+|.   +..++++++++|+++.++.....          ..+.+..  ....+.++++++++++|.+++...+...
T Consensus       231 vld~~g~~~~~~~~~~~l~~~G~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~~~~~~~~  310 (337)
T cd08261         231 VIDATGNPASMEEAVELVAHGGRVVLVGLSKGPVTFPDPEFHKKELTILGSRNATREDFPDVIDLLESGKVDPEALITHR  310 (337)
T ss_pred             EEECCCCHHHHHHHHHHHhcCCEEEEEcCCCCCCccCHHHHHhCCCEEEEeccCChhhHHHHHHHHHcCCCChhhheEEE
Confidence            9999863   57889999999999998754311          1112111  1234578889999999999873224578


Q ss_pred             cchhhHHHHHHHHHhCC-CCeeEEEEe
Q 016265          365 FPFSQVVEAFSYIETNK-ATGKVVIHP  390 (392)
Q Consensus       365 ~~l~~~~~A~~~l~~~~-~~gKvvl~~  390 (392)
                      |+++++.+|++.+.+++ ..+|+|+++
T Consensus       311 ~~~~~~~~a~~~~~~~~~~~~k~v~~~  337 (337)
T cd08261         311 FPFEDVPEAFDLWEAPPGGVIKVLIEF  337 (337)
T ss_pred             eeHHHHHHHHHHHhcCCCceEEEEEeC
Confidence            99999999999999884 679999864

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,

>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like

Probab=100.00  E-value=8.2e-35  Score=281.72  Aligned_cols=297  Identities=22%  Similarity=0.292  Sum_probs=234.1

Q ss_pred             eeEEEEcccCCcceEEEeccccCCCC-CCCeEEEEEeEEecChHhHHhhcCCCCCCCCCCCCcCCCceeEEEEEeCCCCC
Q 016265           84 MKAWLYGEYGGVDVLKFDEKVTVPQV-KEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVK  162 (392)
Q Consensus        84 mka~v~~~~~~~~~l~~~~~~~~p~~-~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~~~p~v~G~e~~G~V~~vG~~v~  162 (392)
                      ||++++++++.   +++. +.+.|.| +++||+||+.++++|++|++.+.|.++   ...|.++|||++|+|+++|+++.
T Consensus         1 m~~~~~~~~~~---~~~~-~~~~p~~~~~~ev~V~v~~~~i~~~d~~~~~g~~~---~~~~~~~g~e~~G~V~~vG~~v~   73 (345)
T cd08287           1 MRATVIHGPGD---IRVE-EVPDPVIEEPTDAVIRVVATCVCGSDLWPYRGVSP---TRAPAPIGHEFVGVVEEVGSEVT   73 (345)
T ss_pred             CceeEEecCCc---eeEE-eCCCCCCCCCCeEEEEEeeeeecccchhhhcCCCC---CCCCcccccceEEEEEEeCCCCC
Confidence            78999987664   7778 8899986 899999999999999999998888764   23478999999999999999999


Q ss_pred             CCCCCCEEEecccc------------------cccCCCCCCCcceeEEEecCC--ceeeCCCCCCHHhHh-----ccchh
Q 016265          163 EFKEGDEVYGDINE------------------KALEGPKQFGSLAEYTAVEER--LLAPKPKNLDFVQAA-----GLPLA  217 (392)
Q Consensus       163 ~~~vGdrV~~~~~~------------------~~~~~~~~~G~~a~~~~v~~~--~~~~iP~~l~~~~aa-----~l~~~  217 (392)
                      ++++||+|++....                  ....+...+|+|++|+.++.+  .++++|++++++.+.     ++...
T Consensus        74 ~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~~lP~~l~~~~~~~~~~~~l~~~  153 (345)
T cd08287          74 SVKPGDFVIAPFAISDGTCPFCRAGFTTSCVHGGFWGAFVDGGQGEYVRVPLADGTLVKVPGSPSDDEDLLPSLLALSDV  153 (345)
T ss_pred             ccCCCCEEEeccccCCCCChhhhCcCcccCCCCCcccCCCCCceEEEEEcchhhCceEECCCCCChhhhhhhhhHhhhcH
Confidence            99999999872111                  001122345999999999975  899999999983221     22356


Q ss_pred             HHHHHHHHHhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCe-EEEEeCCcccHHHHHhcCCcEEEeCCCCcccc----
Q 016265          218 IETAYEGLERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGAS-RVAATSSTRNLEFLKSLGADLAIDYTKDNFED----  292 (392)
Q Consensus       218 ~~ta~~al~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~-vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~~----  292 (392)
                      +.|||+++..+.+++|++|+|.| +|++|++++|+||+ .|++ ++++.+++++.+.++++|++.++++....+.+    
T Consensus       154 ~~~a~~~~~~~~~~~g~~vlI~g-~g~vg~~~~~lak~-~G~~~v~~~~~~~~~~~~~~~~ga~~v~~~~~~~~~~~i~~  231 (345)
T cd08287         154 MGTGHHAAVSAGVRPGSTVVVVG-DGAVGLCAVLAAKR-LGAERIIAMSRHEDRQALAREFGATDIVAERGEEAVARVRE  231 (345)
T ss_pred             HHHHHHHHHhcCCCCCCEEEEEC-CCHHHHHHHHHHHH-cCCCEEEEECCCHHHHHHHHHcCCceEecCCcccHHHHHHH
Confidence            78899999888899999999976 89999999999999 5997 55555677788999999999999987655422    


Q ss_pred             C--CCCccEEEecCc---cHHHHHHhcccCCeEEEEcCCCCCCce----------EEE--EeecHHHHHHHHHHHHCCCc
Q 016265          293 L--PEKFDVVYDAIG---QCDRAVKAIKEGGTVVALTGAVTPPGF----------RFV--VTSNGEVLKKLNPYLESGKV  355 (392)
Q Consensus       293 ~--~~~~D~vid~~G---~~~~~~~~l~~~G~iv~~g~~~~~~~~----------~~~--~~~~~~~~~~~~~~l~~g~l  355 (392)
                      .  ..++|+++|++|   .++.++++++++|+++.++.......+          .+.  .......++++++++++|++
T Consensus       232 ~~~~~~~d~il~~~g~~~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  311 (345)
T cd08287         232 LTGGVGADAVLECVGTQESMEQAIAIARPGGRVGYVGVPHGGVELDVRELFFRNVGLAGGPAPVRRYLPELLDDVLAGRI  311 (345)
T ss_pred             hcCCCCCCEEEECCCCHHHHHHHHHhhccCCEEEEecccCCCCccCHHHHHhcceEEEEecCCcHHHHHHHHHHHHcCCC
Confidence            1  347999999997   368999999999999998754411111          111  11235678999999999999


Q ss_pred             ccccCCCcccchhhHHHHHHHHHhCCCCeeEEEEe
Q 016265          356 KPIIDPKGPFPFSQVVEAFSYIETNKATGKVVIHP  390 (392)
Q Consensus       356 ~~~~~~t~~~~l~~~~~A~~~l~~~~~~gKvvl~~  390 (392)
                      ++...+++.|+++++++|++.+.++... |++|++
T Consensus       312 ~~~~~~~~~~~l~~~~~a~~~~~~~~~~-k~~~~~  345 (345)
T cd08287         312 NPGRVFDLTLPLDEVAEGYRAMDERRAI-KVLLRP  345 (345)
T ss_pred             CHHHhEEeeecHHHHHHHHHHHhCCCce-EEEeCC
Confidence            8754456889999999999998877654 999864

This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD)

Probab=100.00  E-value=1.9e-34  Score=277.27  Aligned_cols=293  Identities=28%  Similarity=0.384  Sum_probs=240.1

Q ss_pred             eeEEEEcccCCc--ceEEEeccccCCCCCCCeEEEEEeEEecChHhHHhhcCCCCCCCCCCCCcCCCceeEEEEEeCCCC
Q 016265           84 MKAWLYGEYGGV--DVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQV  161 (392)
Q Consensus        84 mka~v~~~~~~~--~~l~~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~~~p~v~G~e~~G~V~~vG~~v  161 (392)
                      ||++++.+.+.+  +.+++. +.+.|.++++||+||+.++++|++|++.+.|.++.  ..+|.++|||++|+|+++|+++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ev~irv~~~~i~~~d~~~~~g~~~~--~~~~~~~g~e~~G~V~~vG~~v   77 (329)
T cd08298           1 MKAMVLEKPGPIEENPLRLT-EVPVPEPGPGEVLIKVEACGVCRTDLHIVEGDLPP--PKLPLIPGHEIVGRVEAVGPGV   77 (329)
T ss_pred             CeEEEEecCCCCCCCCceEE-eccCCCCCCCEEEEEEEEEeccHHHHHHHhCCCCC--CCCCccccccccEEEEEECCCC
Confidence            789999887742  336777 77888899999999999999999999999887643  3457899999999999999999


Q ss_pred             CCCCCCCEEEeccc-----c--c------------ccCCCCCCCcceeEEEecCCceeeCCCCCCHHhHhccchhHHHHH
Q 016265          162 KEFKEGDEVYGDIN-----E--K------------ALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAY  222 (392)
Q Consensus       162 ~~~~vGdrV~~~~~-----~--~------------~~~~~~~~G~~a~~~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~  222 (392)
                      .++++||+|++...     .  .            ...+...+|+|++|+.++.+.++++|+++++.+++.+++++.|||
T Consensus        78 ~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~ta~  157 (329)
T cd08298          78 TRFSVGDRVGVPWLGSTCGECRYCRSGRENLCDNARFTGYTVDGGYAEYMVADERFAYPIPEDYDDEEAAPLLCAGIIGY  157 (329)
T ss_pred             CCCcCCCEEEEeccCCCCCCChhHhCcChhhCCCccccccccCCceEEEEEecchhEEECCCCCCHHHhhHhhhhhHHHH
Confidence            99999999986210     0  0            001222368999999999999999999999999999999999999


Q ss_pred             HHHHhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCCccccCCCCccEEEe
Q 016265          223 EGLERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFEDLPEKFDVVYD  302 (392)
Q Consensus       223 ~al~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~~~~~~~D~vid  302 (392)
                      ++++.+++++|++|+|+| +|++|++++++|++ .|++++++++++++++.++++|++.+++....    ..+++|++++
T Consensus       158 ~~~~~~~~~~~~~vlV~g-~g~vg~~~~~la~~-~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~----~~~~vD~vi~  231 (329)
T cd08298         158 RALKLAGLKPGQRLGLYG-FGASAHLALQIARY-QGAEVFAFTRSGEHQELARELGADWAGDSDDL----PPEPLDAAII  231 (329)
T ss_pred             HHHHhhCCCCCCEEEEEC-CcHHHHHHHHHHHH-CCCeEEEEcCChHHHHHHHHhCCcEEeccCcc----CCCcccEEEE
Confidence            999888999999999997 89999999999999 59999999999999999999999888876543    2347999999


Q ss_pred             cCc---cHHHHHHhcccCCeEEEEcCCCC-CCceEE-------EE----eecHHHHHHHHHHHHCCCcccccCCCcccch
Q 016265          303 AIG---QCDRAVKAIKEGGTVVALTGAVT-PPGFRF-------VV----TSNGEVLKKLNPYLESGKVKPIIDPKGPFPF  367 (392)
Q Consensus       303 ~~G---~~~~~~~~l~~~G~iv~~g~~~~-~~~~~~-------~~----~~~~~~~~~~~~~l~~g~l~~~~~~t~~~~l  367 (392)
                      +.+   .++.++++++++|+++.++.... ...+.+       .+    ......+++++++++++.+++.   ++.|++
T Consensus       232 ~~~~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~l~~~---~~~~~~  308 (329)
T cd08298         232 FAPVGALVPAALRAVKKGGRVVLAGIHMSDIPAFDYELLWGEKTIRSVANLTRQDGEEFLKLAAEIPIKPE---VETYPL  308 (329)
T ss_pred             cCCcHHHHHHHHHHhhcCCEEEEEcCCCCCCCccchhhhhCceEEEEecCCCHHHHHHHHHHHHcCCCCce---EEEEeH
Confidence            865   46899999999999998874321 111111       01    2335668889999999998763   478999


Q ss_pred             hhHHHHHHHHHhCCCCeeEEE
Q 016265          368 SQVVEAFSYIETNKATGKVVI  388 (392)
Q Consensus       368 ~~~~~A~~~l~~~~~~gKvvl  388 (392)
                      +++++||+.+++++..||+|+
T Consensus       309 ~~~~~a~~~~~~~~~~~~~v~  329 (329)
T cd08298         309 EEANEALQDLKEGRIRGAAVL  329 (329)
T ss_pred             HHHHHHHHHHHcCCCcceeeC
Confidence            999999999999998899874

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha

>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase

Probab=100.00  E-value=1.4e-34  Score=282.38  Aligned_cols=296  Identities=26%  Similarity=0.352  Sum_probs=239.6

Q ss_pred             eeEEEEcccCCcceEEEeccccCCCCCCCeEEEEEeEEecChHhHHhhcCCCCCCCCCCCCcCCCceeEEEEEeCCCCCC
Q 016265           84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKE  163 (392)
Q Consensus        84 mka~v~~~~~~~~~l~~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~~~p~v~G~e~~G~V~~vG~~v~~  163 (392)
                      |||+++.+++.+  ++++ +++.|.++++||+|++.++++|+.|++.+.|.++   ..+|.++|||++|+|+++|+++..
T Consensus         1 m~a~~~~~~~~~--~~~~-~~~~p~~~~~~v~i~v~~~~i~~~d~~~~~g~~~---~~~~~~~g~e~~G~V~~vG~~v~~   74 (363)
T cd08279           1 MRAAVLHEVGKP--LEIE-EVELDDPGPGEVLVRIAAAGLCHSDLHVVTGDLP---APLPAVLGHEGAGVVEEVGPGVTG   74 (363)
T ss_pred             CeEEEEecCCCC--ceEE-EeeCCCCCCCeEEEEEEEeecCcHHHHHhcCCCC---CCCCccccccceEEEEEeCCCccc
Confidence            799999988754  6777 8899999999999999999999999999888764   346788999999999999999999


Q ss_pred             CCCCCEEEeccccc--------------ccCC------------------------CCCCCcceeEEEecCCceeeCCCC
Q 016265          164 FKEGDEVYGDINEK--------------ALEG------------------------PKQFGSLAEYTAVEERLLAPKPKN  205 (392)
Q Consensus       164 ~~vGdrV~~~~~~~--------------~~~~------------------------~~~~G~~a~~~~v~~~~~~~iP~~  205 (392)
                      +++||+|++.....              +..+                        ....|+|++|+.++.+.++++|++
T Consensus        75 ~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~  154 (363)
T cd08279          75 VKPGDHVVLSWIPACGTCRYCSRGQPNLCDLGAGILGGQLPDGTRRFTADGEPVGAMCGLGTFAEYTVVPEASVVKIDDD  154 (363)
T ss_pred             cCCCCEEEECCCCCCCCChhhcCCCcccCcccccccccccCCCcccccccCccccccccCccceeeEEeccccEEECCCC
Confidence            99999999842100              0000                        013589999999999999999999


Q ss_pred             CCHHhHhccchhHHHHHHHH-HhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCe-EEEEeCCcccHHHHHhcCCcEEE
Q 016265          206 LDFVQAAGLPLAIETAYEGL-ERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGAS-RVAATSSTRNLEFLKSLGADLAI  283 (392)
Q Consensus       206 l~~~~aa~l~~~~~ta~~al-~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~-vv~~~~~~~~~~~~~~~G~~~vi  283 (392)
                      +++++++.+++++.|||+++ ...++.+|++|+|+| +|++|++++++|+. .|++ ++++++++++.+.++++|+++++
T Consensus       155 ~~~~~aa~~~~~~~ta~~~~~~~~~~~~g~~vLI~g-~g~vG~a~i~lak~-~G~~~Vi~~~~~~~~~~~~~~~g~~~vv  232 (363)
T cd08279         155 IPLDRAALLGCGVTTGVGAVVNTARVRPGDTVAVIG-CGGVGLNAIQGARI-AGASRIIAVDPVPEKLELARRFGATHTV  232 (363)
T ss_pred             CChHHeehhcchhHHHHHHHHhccCCCCCCEEEEEC-CCHHHHHHHHHHHH-cCCCcEEEEcCCHHHHHHHHHhCCeEEe
Confidence            99999999999999999987 467899999999995 79999999999998 4996 77778899999999999999999


Q ss_pred             eCCCCcccc----C--CCCccEEEecCc---cHHHHHHhcccCCeEEEEcCCCC--CC----------ceEEE---E--e
Q 016265          284 DYTKDNFED----L--PEKFDVVYDAIG---QCDRAVKAIKEGGTVVALTGAVT--PP----------GFRFV---V--T  337 (392)
Q Consensus       284 ~~~~~~~~~----~--~~~~D~vid~~G---~~~~~~~~l~~~G~iv~~g~~~~--~~----------~~~~~---~--~  337 (392)
                      +++..++..    .  .+++|++||++|   .+..++++++++|+++.++....  ..          ...+.   +  .
T Consensus       233 ~~~~~~~~~~l~~~~~~~~vd~vld~~~~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (363)
T cd08279         233 NASEDDAVEAVRDLTDGRGADYAFEAVGRAATIRQALAMTRKGGTAVVVGMGPPGETVSLPALELFLSEKRLQGSLYGSA  312 (363)
T ss_pred             CCCCccHHHHHHHHcCCCCCCEEEEcCCChHHHHHHHHHhhcCCeEEEEecCCCCcccccCHHHHhhcCcEEEEEEecCc
Confidence            887654322    2  357999999988   35889999999999999875431  10          00000   0  0


Q ss_pred             ecHHHHHHHHHHHHCCCcccccCCCcccchhhHHHHHHHHHhCCCCeeEE
Q 016265          338 SNGEVLKKLNPYLESGKVKPIIDPKGPFPFSQVVEAFSYIETNKATGKVV  387 (392)
Q Consensus       338 ~~~~~~~~~~~~l~~g~l~~~~~~t~~~~l~~~~~A~~~l~~~~~~gKvv  387 (392)
                      .....+++++++++++++++...+++.|+++|+++||+.+.+++..+.++
T Consensus       313 ~~~~~~~~~~~l~~~g~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~  362 (363)
T cd08279         313 NPRRDIPRLLDLYRAGRLKLDELVTRRYSLDEINEAFADMLAGENARGVI  362 (363)
T ss_pred             CcHHHHHHHHHHHHcCCCCcceeEEEEEcHHHHHHHHHHHhcCCceeEEe
Confidence            23567889999999999886533567899999999999999888764444

Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me

>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases

Probab=100.00  E-value=2e-34  Score=276.50  Aligned_cols=298  Identities=26%  Similarity=0.355  Sum_probs=228.6

Q ss_pred             eeEEEEcccCCcceEEEeccccCCCCCCCeEEEEEeEEecChHhHHhhcCCCCCCCCCCCCcCCCceeEEEEEeCCCCCC
Q 016265           84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKE  163 (392)
Q Consensus        84 mka~v~~~~~~~~~l~~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~~~p~v~G~e~~G~V~~vG~~v~~  163 (392)
                      |||+++.+.++.+.+.++ +.+.|.|.++||+||+.++++|++|.+...+... ....+|.++|||++|+|++.|  +.+
T Consensus         1 ~~a~~~~~~~~~~~~~~~-~~~~p~~~~~ev~i~v~~~~i~~~d~~~~~~~~~-~~~~~~~~~g~e~~G~V~~~~--~~~   76 (326)
T cd08289           1 FQALVVEKDEDDVSVSVK-NLTLDDLPEGDVLIRVAYSSVNYKDGLASIPGGK-IVKRYPFIPGIDLAGTVVESN--DPR   76 (326)
T ss_pred             CeeEEEeccCCcceeEEE-EccCCCCCCCeEEEEEEEEecChHHhhhhcCCcc-ccCCCCcCcccceeEEEEEcC--CCC
Confidence            799999988877778888 8999999999999999999999999876643211 123457899999999999964  578


Q ss_pred             CCCCCEEEecccccccCCCCCCCcceeEEEecCCceeeCCCCCCHHhHhccchhHHHHHHHHHh---cCC-CCCCeEEEE
Q 016265          164 FKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLER---TGF-SAGKSILVL  239 (392)
Q Consensus       164 ~~vGdrV~~~~~~~~~~~~~~~G~~a~~~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~al~~---~~~-~~g~~VlI~  239 (392)
                      +++||+|++....   .+...+|+|++|+.++.+.++++|+++++++++.+++++.|||+++..   ... ..|++|+|+
T Consensus        77 ~~~Gd~V~~~~~~---~~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~a~~~~~~~~ta~~~l~~~~~~~~~~~~~~vlI~  153 (326)
T cd08289          77 FKPGDEVIVTSYD---LGVSHHGGYSEYARVPAEWVVPLPKGLTLKEAMILGTAGFTAALSIHRLEENGLTPEQGPVLVT  153 (326)
T ss_pred             CCCCCEEEEcccc---cCCCCCCcceeEEEEcHHHeEECCCCCCHHHHhhhhhHHHHHHHHHHHHHhcCCCCCCCEEEEE
Confidence            9999999986421   122346999999999999999999999999999999999999988743   333 347899999


Q ss_pred             cCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCCcc---ccC-CCCccEEEecCc--cHHHHHHh
Q 016265          240 NGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNF---EDL-PEKFDVVYDAIG--QCDRAVKA  313 (392)
Q Consensus       240 Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~---~~~-~~~~D~vid~~G--~~~~~~~~  313 (392)
                      |++|++|++++|+|+. .|+++++++++++++++++++|++++++.++...   .+. .+++|++|||+|  .++.++++
T Consensus       154 g~~g~vg~~~~~~a~~-~g~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~vld~~g~~~~~~~~~~  232 (326)
T cd08289         154 GATGGVGSLAVSILAK-LGYEVVASTGKADAADYLKKLGAKEVIPREELQEESIKPLEKQRWAGAVDPVGGKTLAYLLST  232 (326)
T ss_pred             cCCchHHHHHHHHHHH-CCCeEEEEecCHHHHHHHHHcCCCEEEcchhHHHHHHHhhccCCcCEEEECCcHHHHHHHHHH
Confidence            9889999999999999 4999999999999999999999999988765321   111 357999999998  46889999


Q ss_pred             cccCCeEEEEcCCCC---C--------CceEEEE---eec-HHHHHHHHHHHHCCCcccc---cCCCcccchhhHHHHHH
Q 016265          314 IKEGGTVVALTGAVT---P--------PGFRFVV---TSN-GEVLKKLNPYLESGKVKPI---IDPKGPFPFSQVVEAFS  375 (392)
Q Consensus       314 l~~~G~iv~~g~~~~---~--------~~~~~~~---~~~-~~~~~~~~~~l~~g~l~~~---~~~t~~~~l~~~~~A~~  375 (392)
                      ++++|+++.+|....   +        ....+..   ... .....++++.+.. .+++.   ..+++.|+++++.+||+
T Consensus       233 l~~~G~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~a~~  311 (326)
T cd08289         233 LQYGGSVAVSGLTGGGEVETTVFPFILRGVNLLGIDSVECPMELRRRIWRRLAT-DLKPTQLLNEIKQEITLDELPEALK  311 (326)
T ss_pred             hhcCCEEEEEeecCCCCCCcchhhhhhccceEEEEEeEecCchHHHHHHHHHHh-hcCccccccccceEeeHHHHHHHHH
Confidence            999999999986421   1        0111111   011 1122233333322 22211   12368899999999999


Q ss_pred             HHHhCCCCeeEEEEe
Q 016265          376 YIETNKATGKVVIHP  390 (392)
Q Consensus       376 ~l~~~~~~gKvvl~~  390 (392)
                      .+.+++..||+|+++
T Consensus       312 ~~~~~~~~gkvvv~~  326 (326)
T cd08289         312 QILQGRVTGRTVVKL  326 (326)
T ss_pred             HHhcCcccceEEEeC
Confidence            999999889999864

yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH

>cd08248 RTN4I1 Human Reticulon 4 Interacting Protein 1

Probab=100.00  E-value=2.3e-34  Score=278.99  Aligned_cols=295  Identities=41%  Similarity=0.671  Sum_probs=238.4

Q ss_pred             eeEEEEcccCCc-ceEEEeccccCCCC-CCCeEEEEEeEEecChHhHHhhcCCCCC-------------CCCCCCCcCCC
Q 016265           84 MKAWLYGEYGGV-DVLKFDEKVTVPQV-KEDQVLIKVVAAALNPVDGKRRQGKFKA-------------TDSPLPTVPGY  148 (392)
Q Consensus        84 mka~v~~~~~~~-~~l~~~~~~~~p~~-~~~eVlV~v~~~~i~~~D~~~~~g~~~~-------------~~~~~p~v~G~  148 (392)
                      |||+++.+++++ +.++++ +.+.|.| +++||+||+.++++|++|++...|....             ....+|.++||
T Consensus         1 ~~a~~~~~~~~~~~~~~~~-~~~~p~~~~~~ev~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~p~~~G~   79 (350)
T cd08248           1 MKAWQIHSYGGIDSLLLLE-NARIPVIRKPNQVLIKVHAASVNPIDVLMRSGYGRTLLNKKRKPQSCKYSGIEFPLTLGR   79 (350)
T ss_pred             CceEEecccCCCcceeeec-ccCCCCCCCCCeEEEEEEEEecCchhHHHHcCCccchhhhhhccccccccCCCCCeeecc
Confidence            789999888774 347777 8999999 4999999999999999999988874210             02345789999


Q ss_pred             ceeEEEEEeCCCCCCCCCCCEEEecccccccCCCCCCCcceeEEEecCCceeeCCCCCCHHhHhccchhHHHHHHHHHh-
Q 016265          149 DVAGVVVKVGTQVKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLER-  227 (392)
Q Consensus       149 e~~G~V~~vG~~v~~~~vGdrV~~~~~~~~~~~~~~~G~~a~~~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~al~~-  227 (392)
                      |++|+|+++|++++++++||||++....      ...|+|++|+.++.+.++++|+++++++++.+++++.|||+++.. 
T Consensus        80 e~~G~v~~vG~~v~~~~~Gd~V~~~~~~------~~~g~~~~~~~v~~~~~~~lp~~~~~~~aa~~~~~~~ta~~~l~~~  153 (350)
T cd08248          80 DCSGVVVDIGSGVKSFEIGDEVWGAVPP------WSQGTHAEYVVVPENEVSKKPKNLSHEEAASLPYAGLTAWSALVNV  153 (350)
T ss_pred             eeEEEEEecCCCcccCCCCCEEEEecCC------CCCccceeEEEecHHHeecCCCCCCHHHHhhchhHHHHHHHHHHHh
Confidence            9999999999999999999999986421      125899999999999999999999999999999999999999854 


Q ss_pred             cCCC----CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCCcccc---CCCCccEE
Q 016265          228 TGFS----AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFED---LPEKFDVV  300 (392)
Q Consensus       228 ~~~~----~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~~---~~~~~D~v  300 (392)
                      ..+.    +|++|+|+|++|++|++++++|+.+ |+++++++++ ++.+.++++|.+++++.....+.+   ..+++|++
T Consensus       154 ~~~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~-G~~v~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~vd~v  231 (350)
T cd08248         154 GGLNPKNAAGKRVLILGGSGGVGTFAIQLLKAW-GAHVTTTCST-DAIPLVKSLGADDVIDYNNEDFEEELTERGKFDVI  231 (350)
T ss_pred             ccCCCccCCCCEEEEECCCChHHHHHHHHHHHC-CCeEEEEeCc-chHHHHHHhCCceEEECCChhHHHHHHhcCCCCEE
Confidence            4554    4999999999999999999999994 9998877654 678888999999998876543322   13579999


Q ss_pred             EecCc--cHHHHHHhcccCCeEEEEcCCCCC------C-------ceEE----------------E-EeecHHHHHHHHH
Q 016265          301 YDAIG--QCDRAVKAIKEGGTVVALTGAVTP------P-------GFRF----------------V-VTSNGEVLKKLNP  348 (392)
Q Consensus       301 id~~G--~~~~~~~~l~~~G~iv~~g~~~~~------~-------~~~~----------------~-~~~~~~~~~~~~~  348 (392)
                      ||++|  ....++++++++|+++.++.....      .       .+.+                . .......+.++++
T Consensus       232 i~~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (350)
T cd08248         232 LDTVGGDTEKWALKLLKKGGTYVTLVSPLLKNTDKLGLVGGMLKSAVDLLKKNVKSLLKGSHYRWGFFSPSGSALDELAK  311 (350)
T ss_pred             EECCChHHHHHHHHHhccCCEEEEecCCcccccccccccchhhhhHHHHHHHHHHHHhcCCCeeEEEECCCHHHHHHHHH
Confidence            99998  468899999999999998743210      0       0000                0 0123566888999


Q ss_pred             HHHCCCcccccCCCcccchhhHHHHHHHHHhCCCCeeEEEE
Q 016265          349 YLESGKVKPIIDPKGPFPFSQVVEAFSYIETNKATGKVVIH  389 (392)
Q Consensus       349 ~l~~g~l~~~~~~t~~~~l~~~~~A~~~l~~~~~~gKvvl~  389 (392)
                      ++++|.+.+.  +++.|+++++.+||+.+.+++..+|++++
T Consensus       312 ~~~~g~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~~vv~~  350 (350)
T cd08248         312 LVEDGKIKPV--IDKVFPFEEVPEAYEKVESGHARGKTVIK  350 (350)
T ss_pred             HHhCCCEecc--cceeecHHHHHHHHHHHhcCCCceEEEeC
Confidence            9999998754  56889999999999999988878898864

Human Reticulon 4 Interacting Protein 1 is a member of the medium chain dehydrogenase/ reductase (MDR) family. Riticulons are endoplasmic reticulum associated proteins involved in membrane trafficking and neuroendocrine secretion. The MDR/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.

>TIGR02823 oxido_YhdH putative quinone oxidoreductase, YhdH/YhfP family

Probab=100.00  E-value=4.6e-34  Score=273.83  Aligned_cols=294  Identities=28%  Similarity=0.394  Sum_probs=236.6

Q ss_pred             eEEEEcccCCcceEEEeccccCCCCCCCeEEEEEeEEecChHhHHhhcCCCCCCCCCCCCcCCCceeEEEEEeCCCCCCC
Q 016265           85 KAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKEF  164 (392)
Q Consensus        85 ka~v~~~~~~~~~l~~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~~~p~v~G~e~~G~V~~vG~~v~~~  164 (392)
                      ||+++...+.+++++++ +.|.|.+.++||+||+.++++|++|++.+.|.++. ...+|.++|||++|+|++  .++..|
T Consensus         1 ~a~~~~~~~~~~~~~~~-~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~-~~~~~~~~g~e~~G~V~~--~~~~~~   76 (323)
T TIGR02823         1 KALVVEKEDGKVSAQVE-TLDLSDLPEGDVLIKVAYSSLNYKDALAITGKGGV-VRSYPMIPGIDAAGTVVS--SEDPRF   76 (323)
T ss_pred             CeEEEccCCCCcceeEe-ecCCCCCCCCeEEEEEEEEEcCHHHHHHHcCCCCC-CCCCCccceeeeEEEEEe--cCCCCC
Confidence            68888888877788999 89999999999999999999999999999887632 134578899999999998  567789


Q ss_pred             CCCCEEEecccccccCCCCCCCcceeEEEecCCceeeCCCCCCHHhHhccchhHHHHHHHHH---hcCCCCCC-eEEEEc
Q 016265          165 KEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLE---RTGFSAGK-SILVLN  240 (392)
Q Consensus       165 ~vGdrV~~~~~~~~~~~~~~~G~~a~~~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~al~---~~~~~~g~-~VlI~G  240 (392)
                      ++||+|++....   .+...+|+|++|+.++.+.++++|+++++++++.+++.+.+|++++.   ++.+.+|+ +|+|+|
T Consensus        77 ~~Gd~V~~~~~~---~~~~~~g~~~~~~~~~~~~~~~iP~~~~~~~aa~~~~~~~ta~~~~~~~~~~~~~~~~~~vlI~g  153 (323)
T TIGR02823        77 REGDEVIVTGYG---LGVSHDGGYSQYARVPADWLVPLPEGLSLREAMALGTAGFTAALSVMALERNGLTPEDGPVLVTG  153 (323)
T ss_pred             CCCCEEEEccCC---CCCCCCccceEEEEEchhheEECCCCCCHHHhhhhhhhHHHHHHHHHHhhhcCCCCCCceEEEEc
Confidence            999999986421   12223689999999999999999999999999999998889987763   44588998 999999


Q ss_pred             CCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCCcc--ccC-CCCccEEEecCc--cHHHHHHhcc
Q 016265          241 GSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNF--EDL-PEKFDVVYDAIG--QCDRAVKAIK  315 (392)
Q Consensus       241 a~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~--~~~-~~~~D~vid~~G--~~~~~~~~l~  315 (392)
                      ++|++|++++++|+.+ |+++++++.++++++.++++|++++++..+...  ... ..++|+++||+|  .++.++++++
T Consensus       154 ~~g~vg~~~~~la~~~-G~~vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~d~vld~~g~~~~~~~~~~l~  232 (323)
T TIGR02823       154 ATGGVGSLAVAILSKL-GYEVVASTGKAEEEDYLKELGASEVIDREDLSPPGKPLEKERWAGAVDTVGGHTLANVLAQLK  232 (323)
T ss_pred             CCcHHHHHHHHHHHHc-CCeEEEEeCCHHHHHHHHhcCCcEEEccccHHHHHHHhcCCCceEEEECccHHHHHHHHHHhC
Confidence            8899999999999995 999998888888889999999999888754332  112 235999999998  4688999999


Q ss_pred             cCCeEEEEcCCCC---C--------CceEEEE---e-e----cHHHHHHHHHHHHCCCcccccCCCcccchhhHHHHHHH
Q 016265          316 EGGTVVALTGAVT---P--------PGFRFVV---T-S----NGEVLKKLNPYLESGKVKPIIDPKGPFPFSQVVEAFSY  376 (392)
Q Consensus       316 ~~G~iv~~g~~~~---~--------~~~~~~~---~-~----~~~~~~~~~~~l~~g~l~~~~~~t~~~~l~~~~~A~~~  376 (392)
                      ++|+++.+|....   .        ....+..   . .    ....+..+.+++..+.++..   .+.|+++++++||+.
T Consensus       233 ~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~a~~~  309 (323)
T TIGR02823       233 YGGAVAACGLAGGPDLPTTVLPFILRGVSLLGIDSVYCPMALREAAWQRLATDLKPRNLESI---TREITLEELPEALEQ  309 (323)
T ss_pred             CCCEEEEEcccCCCCccccHHHHhhcceEEEEEeccccCchhHHHHHHHHHHHhhcCCCcCc---eeeecHHHHHHHHHH
Confidence            9999999985431   1        1111111   0 0    12235666777778877643   458999999999999


Q ss_pred             HHhCCCCeeEEEE
Q 016265          377 IETNKATGKVVIH  389 (392)
Q Consensus       377 l~~~~~~gKvvl~  389 (392)
                      +.+++..||+|+.
T Consensus       310 ~~~~~~~~k~vv~  322 (323)
T TIGR02823       310 ILAGQHRGRTVVD  322 (323)
T ss_pred             HhCCCccceEEEe
Confidence            9999988999885

This model represents a subfamily of pfam00107 as defined by Pfam, a superfamily in which some members are zinc-binding medium-chain alcohol dehydrogenases while others are quinone oxidoreductases with no bound zinc. This subfamily includes proteins studied crystallographically for insight into function: YhdH from Escherichia coli and YhfP from Bacillus subtilis. Members bind NADPH or NAD, but not zinc.

>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR)

Probab=100.00  E-value=4.4e-34  Score=272.74  Aligned_cols=293  Identities=30%  Similarity=0.446  Sum_probs=239.1

Q ss_pred             eeEEEEcccCCcceEEEeccccCCCCCCCeEEEEEeEEecChHhHHhhcCCCCCCCCCCCCcCCCceeEEEEEeCCCCCC
Q 016265           84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKE  163 (392)
Q Consensus        84 mka~v~~~~~~~~~l~~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~~~p~v~G~e~~G~V~~vG~~v~~  163 (392)
                      ||++++.+.+....+++. +.+.|.++++||+||+.++++|+.|++...|.++  ....|.++|||++|+|+++|.  ..
T Consensus         1 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~--~~~~~~~~g~e~~G~v~~vG~--~~   75 (320)
T cd08243           1 MKAIVIEQPGGPEVLKLR-EIPIPEPKPGWVLIRVKAFGLNRSEIFTRQGHSP--SVKFPRVLGIEAVGEVEEAPG--GT   75 (320)
T ss_pred             CeEEEEcCCCCccceEEe-ecCCCCCCCCEEEEEEEEEecCHHHHHHhcCCCC--CCCCCccccceeEEEEEEecC--CC
Confidence            689999877765567777 7788889999999999999999999999888653  234578899999999999995  57


Q ss_pred             CCCCCEEEecccccccCCCCCCCcceeEEEecCCceeeCCCCCCHHhHhccchhHHHHHHHHHh-cCCCCCCeEEEEcCC
Q 016265          164 FKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLER-TGFSAGKSILVLNGS  242 (392)
Q Consensus       164 ~~vGdrV~~~~~~~~~~~~~~~G~~a~~~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~al~~-~~~~~g~~VlI~Ga~  242 (392)
                      +++||+|++.....   +....|+|++|+.++...++++|+++++++++.+++++.|||+++.. ..+++|++|+|+|++
T Consensus        76 ~~~Gd~V~~~~~~~---~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlV~ga~  152 (320)
T cd08243          76 FTPGQRVATAMGGM---GRTFDGSYAEYTLVPNEQVYAIDSDLSWAELAALPETYYTAWGSLFRSLGLQPGDTLLIRGGT  152 (320)
T ss_pred             CCCCCEEEEecCCC---CCCCCcccceEEEcCHHHcEeCCCCCCHHHHHhcchHHHHHHHHHHHhcCCCCCCEEEEEcCC
Confidence            99999999864311   12235899999999999999999999999999999999999999864 568999999999988


Q ss_pred             CcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCCcc----ccCCCCccEEEecCcc--HHHHHHhccc
Q 016265          243 GGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNF----EDLPEKFDVVYDAIGQ--CDRAVKAIKE  316 (392)
Q Consensus       243 G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~----~~~~~~~D~vid~~G~--~~~~~~~l~~  316 (392)
                      |++|++++|+|+.+ |+++++++.++++.+.++++|++++++... ++    .+..+++|+++||+|.  +..+++++++
T Consensus       153 g~~g~~~~~~a~~~-g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~i~~~~~~~d~vl~~~~~~~~~~~~~~l~~  230 (320)
T cd08243         153 SSVGLAALKLAKAL-GATVTATTRSPERAALLKELGADEVVIDDG-AIAEQLRAAPGGFDKVLELVGTATLKDSLRHLRP  230 (320)
T ss_pred             ChHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHhcCCcEEEecCc-cHHHHHHHhCCCceEEEECCChHHHHHHHHHhcc
Confidence            99999999999994 999999999999999999999988876432 22    1124679999999983  5888999999


Q ss_pred             CCeEEEEcCCCCC---------------CceEEEE----eecHHHHHHHHHHHHCCCcccccCCCcccchhhHHHHHHHH
Q 016265          317 GGTVVALTGAVTP---------------PGFRFVV----TSNGEVLKKLNPYLESGKVKPIIDPKGPFPFSQVVEAFSYI  377 (392)
Q Consensus       317 ~G~iv~~g~~~~~---------------~~~~~~~----~~~~~~~~~~~~~l~~g~l~~~~~~t~~~~l~~~~~A~~~l  377 (392)
                      +|+++.+|.....               ....+..    ......+++++++++.+.+++.  +++.|+++++++|++.+
T Consensus       231 ~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~a~~~~  308 (320)
T cd08243         231 GGIVCMTGLLGGQWTLEDFNPMDDIPSGVNLTLTGSSSGDVPQTPLQELFDFVAAGHLDIP--PSKVFTFDEIVEAHAYM  308 (320)
T ss_pred             CCEEEEEccCCCCcccCCcchhhhhhhccceEEEecchhhhhHHHHHHHHHHHHCCceecc--cccEEcHHHHHHHHHHH
Confidence            9999998753100               0111111    0113457888999999998764  56789999999999999


Q ss_pred             HhCCCCeeEEE
Q 016265          378 ETNKATGKVVI  388 (392)
Q Consensus       378 ~~~~~~gKvvl  388 (392)
                      .++...||+|+
T Consensus       309 ~~~~~~~kvvv  319 (320)
T cd08243         309 ESNRAFGKVVV  319 (320)
T ss_pred             HhCCCCCcEEe
Confidence            99888889886

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>cd08234 threonine_DH_like L-threonine dehydrogenase

Probab=100.00  E-value=7.2e-34  Score=273.74  Aligned_cols=294  Identities=35%  Similarity=0.468  Sum_probs=239.0

Q ss_pred             eeEEEEcccCCcceEEEeccccCCCCCCCeEEEEEeEEecChHhHHhhcCCCCCCCCCCCCcCCCceeEEEEEeCCCCCC
Q 016265           84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKE  163 (392)
Q Consensus        84 mka~v~~~~~~~~~l~~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~~~p~v~G~e~~G~V~~vG~~v~~  163 (392)
                      |||+++.+++.   +++. +.+.|+++++||+||+.++++|+.|++...|.++.   .+|.++|+|++|+|+++|+++++
T Consensus         1 ~~a~~~~~~~~---~~~~-~~~~~~l~~~~v~v~v~~~~l~~~d~~~~~g~~~~---~~p~~~g~~~~G~v~~vG~~v~~   73 (334)
T cd08234           1 MKALVYEGPGE---LEVE-EVPVPEPGPDEVLIKVAACGICGTDLHIYEGEFGA---APPLVPGHEFAGVVVAVGSKVTG   73 (334)
T ss_pred             CeeEEecCCCc---eEEE-eccCCCCCCCeEEEEEEEEeEchhhhHHhcCCCCC---CCCcccccceEEEEEEeCCCCCC
Confidence            78999987774   7788 89999999999999999999999999999887642   36789999999999999999999


Q ss_pred             CCCCCEEEecccccc------c------------CCCCCCCcceeEEEecCCceeeCCCCCCHHhHhccchhHHHHHHHH
Q 016265          164 FKEGDEVYGDINEKA------L------------EGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGL  225 (392)
Q Consensus       164 ~~vGdrV~~~~~~~~------~------------~~~~~~G~~a~~~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~al  225 (392)
                      +++||+|++......      .            .+....|+|++|+.++.+.++++|+++++.+++.+ ..+.++++++
T Consensus        74 ~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~lP~~~~~~~aa~~-~~~~~a~~~l  152 (334)
T cd08234          74 FKVGDRVAVDPNIYCGECFYCRRGRPNLCENLTAVGVTRNGGFAEYVVVPAKQVYKIPDNLSFEEAALA-EPLSCAVHGL  152 (334)
T ss_pred             CCCCCEEEEcCCcCCCCCccccCcChhhCCCcceeccCCCCcceeEEEecHHHcEECcCCCCHHHHhhh-hHHHHHHHHH
Confidence            999999987322110      0            11113689999999999999999999999998765 6778899998


Q ss_pred             HhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCe-EEEEeCCcccHHHHHhcCCcEEEeCCCCcccc----CCCCccEE
Q 016265          226 ERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGAS-RVAATSSTRNLEFLKSLGADLAIDYTKDNFED----LPEKFDVV  300 (392)
Q Consensus       226 ~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~-vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~~----~~~~~D~v  300 (392)
                      +.+++++|++|+|+| +|.+|++++++|+. .|++ ++++++++++.+.++++|++.++++.+.++..    ..+++|++
T Consensus       153 ~~~~~~~g~~vlI~g-~g~vg~~~~~la~~-~G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~vd~v  230 (334)
T cd08234         153 DLLGIKPGDSVLVFG-AGPIGLLLAQLLKL-NGASRVTVAEPNEEKLELAKKLGATETVDPSREDPEAQKEDNPYGFDVV  230 (334)
T ss_pred             HhcCCCCCCEEEEEC-CCHHHHHHHHHHHH-cCCcEEEEECCCHHHHHHHHHhCCeEEecCCCCCHHHHHHhcCCCCcEE
Confidence            888999999999997 79999999999999 5998 67778888999999999998888876654321    24579999


Q ss_pred             EecCcc---HHHHHHhcccCCeEEEEcCCCCC------------CceEEE-EeecHHHHHHHHHHHHCCCcccccCCCcc
Q 016265          301 YDAIGQ---CDRAVKAIKEGGTVVALTGAVTP------------PGFRFV-VTSNGEVLKKLNPYLESGKVKPIIDPKGP  364 (392)
Q Consensus       301 id~~G~---~~~~~~~l~~~G~iv~~g~~~~~------------~~~~~~-~~~~~~~~~~~~~~l~~g~l~~~~~~t~~  364 (392)
                      |||+|.   ...++++++++|+++.+|.....            ..+.+. .......+++++++++++++++...+...
T Consensus       231 ~~~~~~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  310 (334)
T cd08234         231 IEATGVPKTLEQAIEYARRGGTVLVFGVYAPDARVSISPFEIFQKELTIIGSFINPYTFPRAIALLESGKIDVKGLVSHR  310 (334)
T ss_pred             EECCCChHHHHHHHHHHhcCCEEEEEecCCCCCCcccCHHHHHhCCcEEEEeccCHHHHHHHHHHHHcCCCChhhhEEEE
Confidence            999973   57889999999999998754321            011111 12235678899999999998764334578


Q ss_pred             cchhhHHHHHHHHHhCCCCeeEEE
Q 016265          365 FPFSQVVEAFSYIETNKATGKVVI  388 (392)
Q Consensus       365 ~~l~~~~~A~~~l~~~~~~gKvvl  388 (392)
                      |+++++++|++.+.+ ...||+|+
T Consensus       311 ~~~~~~~~a~~~~~~-~~~~k~vi  333 (334)
T cd08234         311 LPLEEVPEALEGMRS-GGALKVVV  333 (334)
T ss_pred             ecHHHHHHHHHHHhc-CCceEEEe
Confidence            999999999999998 77789886

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.

>cd08252 AL_MDR Arginate lyase and other MDR family members

Probab=100.00  E-value=8.3e-34  Score=273.42  Aligned_cols=295  Identities=34%  Similarity=0.530  Sum_probs=241.3

Q ss_pred             eeEEEEcccCCcc---eEEEeccccCCCCCCCeEEEEEeEEecChHhHHhhcCCCCCCCCCCCCcCCCceeEEEEEeCCC
Q 016265           84 MKAWLYGEYGGVD---VLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQ  160 (392)
Q Consensus        84 mka~v~~~~~~~~---~l~~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~~~p~v~G~e~~G~V~~vG~~  160 (392)
                      |||+++++++..+   .+.++ +.+.|.+.+++|+||+.++++|++|++.+.|.++  ...+|.++|||++|+|+++|++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~--~~~~~~~~g~e~~G~v~~~G~~   77 (336)
T cd08252           1 MKAIGFTQPLPITDPDSLIDI-ELPKPVPGGRDLLVRVEAVSVNPVDTKVRAGGAP--VPGQPKILGWDASGVVEAVGSE   77 (336)
T ss_pred             CceEEecCCCCCCcccceeEc-cCCCCCCCCCEEEEEEEEEEcCHHHHHHHcCCCC--CCCCCcccccceEEEEEEcCCC
Confidence            6899999988764   46766 7888899999999999999999999998887653  2345678999999999999999


Q ss_pred             CCCCCCCCEEEecccccccCCCCCCCcceeEEEecCCceeeCCCCCCHHhHhccchhHHHHHHHH-HhcCCCC-----CC
Q 016265          161 VKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGL-ERTGFSA-----GK  234 (392)
Q Consensus       161 v~~~~vGdrV~~~~~~~~~~~~~~~G~~a~~~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~al-~~~~~~~-----g~  234 (392)
                      +..+++||+|++...      ...+|+|++|+.++..+++++|+++++++++.+++++.|||+++ +.+.+.+     |+
T Consensus        78 v~~~~~Gd~V~~~~~------~~~~g~~~~~~~v~~~~~~~ip~~~~~~~~~~~~~~~~ta~~~l~~~~~~~~~~~~~g~  151 (336)
T cd08252          78 VTLFKVGDEVYYAGD------ITRPGSNAEYQLVDERIVGHKPKSLSFAEAAALPLTSLTAWEALFDRLGISEDAENEGK  151 (336)
T ss_pred             CCCCCCCCEEEEcCC------CCCCccceEEEEEchHHeeeCCCCCCHHHhhhhhhHHHHHHHHHHHhcCCCCCcCCCCC
Confidence            999999999998531      01358999999999999999999999999999999999999997 4567776     99


Q ss_pred             eEEEEcCCCcHHHHHHHHHHHhcC-CeEEEEeCCcccHHHHHhcCCcEEEeCCCCccc----cC-CCCccEEEecCc---
Q 016265          235 SILVLNGSGGVGSLVIQLAKQVFG-ASRVAATSSTRNLEFLKSLGADLAIDYTKDNFE----DL-PEKFDVVYDAIG---  305 (392)
Q Consensus       235 ~VlI~Ga~G~vG~~aiqlak~~~G-~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~----~~-~~~~D~vid~~G---  305 (392)
                      +|+|+|++|++|++++|+|+.+ | +++++++.++++.++++++|++++++... .+.    .. .+++|++|||+|   
T Consensus       152 ~vlV~g~~g~vg~~~~~~a~~~-G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~i~~~~~~~~d~vl~~~~~~~  229 (336)
T cd08252         152 TLLIIGGAGGVGSIAIQLAKQL-TGLTVIATASRPESIAWVKELGADHVINHHQ-DLAEQLEALGIEPVDYIFCLTDTDQ  229 (336)
T ss_pred             EEEEEcCCchHHHHHHHHHHHc-CCcEEEEEcCChhhHHHHHhcCCcEEEeCCc-cHHHHHHhhCCCCCCEEEEccCcHH
Confidence            9999998999999999999995 9 99999999999999999999999998764 221    12 257999999987   


Q ss_pred             cHHHHHHhcccCCeEEEEcCCCC--------CCceEEE---Ee-----------ecHHHHHHHHHHHHCCCcccccC-CC
Q 016265          306 QCDRAVKAIKEGGTVVALTGAVT--------PPGFRFV---VT-----------SNGEVLKKLNPYLESGKVKPIID-PK  362 (392)
Q Consensus       306 ~~~~~~~~l~~~G~iv~~g~~~~--------~~~~~~~---~~-----------~~~~~~~~~~~~l~~g~l~~~~~-~t  362 (392)
                      .+..++++++++|+++.+|....        .....+.   +.           .....++++++++.+|.+++... ..
T Consensus       230 ~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  309 (336)
T cd08252         230 HWDAMAELIAPQGHICLIVDPQEPLDLGPLKSKSASFHWEFMFTRSMFQTPDMIEQHEILNEVADLLDAGKLKTTLTETL  309 (336)
T ss_pred             HHHHHHHHhcCCCEEEEecCCCCcccchhhhcccceEEEEEeeccccccccchhhHHHHHHHHHHHHHCCCEecceeeee
Confidence            36889999999999999975421        1111111   00           11245788999999999986422 12


Q ss_pred             cccchhhHHHHHHHHHhCCCCeeEEEE
Q 016265          363 GPFPFSQVVEAFSYIETNKATGKVVIH  389 (392)
Q Consensus       363 ~~~~l~~~~~A~~~l~~~~~~gKvvl~  389 (392)
                      +.|+++++++||+.+.++...||++++
T Consensus       310 ~~~~~~~~~~a~~~~~~~~~~~~vv~~  336 (336)
T cd08252         310 GPINAENLREAHALLESGKTIGKIVLE  336 (336)
T ss_pred             cCCCHHHHHHHHHHHHcCCccceEEeC
Confidence            468999999999999999888999874

This group contains a structure identified as an arginate lyase. Other members are identified quinone reductases, alginate lyases, and other proteins related to the zinc-dependent dehydrogenases/reductases. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, whil

>cd05282 ETR_like 2-enoyl thioester reductase-like

Probab=100.00  E-value=5.9e-34  Score=272.71  Aligned_cols=286  Identities=27%  Similarity=0.387  Sum_probs=235.9

Q ss_pred             cccCCcc--eEEEeccccCCCCCCCeEEEEEeEEecChHhHHhhcCCCCCCCCCCCCcCCCceeEEEEEeCCCCCCCCCC
Q 016265           90 GEYGGVD--VLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKEFKEG  167 (392)
Q Consensus        90 ~~~~~~~--~l~~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~~~p~v~G~e~~G~V~~vG~~v~~~~vG  167 (392)
                      ++++.+.  .++++ +.+.|.+.+++|+||+.++++|+.|++.+.|.++. ...+|.++|||++|+|+++|++++.+++|
T Consensus         4 ~~~~~~~~~~~~~~-~~~~~~~~~~~v~i~v~~~~~~~~d~~~~~~~~~~-~~~~~~~~g~e~~G~v~~~G~~v~~~~~G   81 (323)
T cd05282           4 TQFGEPLPLVLELV-SLPIPPPGPGEVLVRMLAAPINPSDLITISGAYGS-RPPLPAVPGNEGVGVVVEVGSGVSGLLVG   81 (323)
T ss_pred             CcCCCCccceEEeE-eCCCCCCCCCeEEEEEEeccCCHHHHHHhcCcCCC-CCCCCCcCCcceEEEEEEeCCCCCCCCCC
Confidence            4444433  57777 78889999999999999999999999988877643 23467899999999999999999999999


Q ss_pred             CEEEecccccccCCCCCCCcceeEEEecCCceeeCCCCCCHHhHhccchhHHHHHHHHH-hcCCCCCCeEEEEcCCCcHH
Q 016265          168 DEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLE-RTGFSAGKSILVLNGSGGVG  246 (392)
Q Consensus       168 drV~~~~~~~~~~~~~~~G~~a~~~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~al~-~~~~~~g~~VlI~Ga~G~vG  246 (392)
                      |+|++...         .|+|++|+.++...++++|+++++.+++.+++...+||+++. ...+.+|++|+|+|+.|++|
T Consensus        82 d~V~~~~~---------~g~~~~~~~~~~~~~~~lp~~~~~~~~a~~~~~~~ta~~~~~~~~~~~~~~~vlI~g~~~~vg  152 (323)
T cd05282          82 QRVLPLGG---------EGTWQEYVVAPADDLIPVPDSISDEQAAMLYINPLTAWLMLTEYLKLPPGDWVIQNAANSAVG  152 (323)
T ss_pred             CEEEEeCC---------CCcceeEEecCHHHeEECCCCCCHHHHHHHhccHHHHHHHHHHhccCCCCCEEEEcccccHHH
Confidence            99998641         489999999999999999999999999999999999999985 45689999999999889999


Q ss_pred             HHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCCcccc----C--CCCccEEEecCcc--HHHHHHhcccCC
Q 016265          247 SLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFED----L--PEKFDVVYDAIGQ--CDRAVKAIKEGG  318 (392)
Q Consensus       247 ~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~~----~--~~~~D~vid~~G~--~~~~~~~l~~~G  318 (392)
                      ++++++|+. .|++++++++++++++.++++|+++++++.+..+.+    .  .+++|++|||+|.  ....+++++++|
T Consensus       153 ~~~~~~a~~-~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~~~g~~~~~~~~~~l~~~g  231 (323)
T cd05282         153 RMLIQLAKL-LGFKTINVVRRDEQVEELKALGADEVIDSSPEDLAQRVKEATGGAGARLALDAVGGESATRLARSLRPGG  231 (323)
T ss_pred             HHHHHHHHH-CCCeEEEEecChHHHHHHHhcCCCEEecccchhHHHHHHHHhcCCCceEEEECCCCHHHHHHHHhhCCCC
Confidence            999999999 499999999999999999999999999887644322    1  3579999999983  567899999999


Q ss_pred             eEEEEcCCCCC-----------CceEEEE---ee-----c----HHHHHHHHHHHHCCCcccccCCCcccchhhHHHHHH
Q 016265          319 TVVALTGAVTP-----------PGFRFVV---TS-----N----GEVLKKLNPYLESGKVKPIIDPKGPFPFSQVVEAFS  375 (392)
Q Consensus       319 ~iv~~g~~~~~-----------~~~~~~~---~~-----~----~~~~~~~~~~l~~g~l~~~~~~t~~~~l~~~~~A~~  375 (392)
                      +++.+|.....           ....+..   ..     .    .+.++++++++.++++.+.  +++.|+++++.+||+
T Consensus       232 ~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--~~~~~~~~~~~~a~~  309 (323)
T cd05282         232 TLVNYGLLSGEPVPFPRSVFIFKDITVRGFWLRQWLHSATKEAKQETFAEVIKLVEAGVLTTP--VGAKFPLEDFEEAVA  309 (323)
T ss_pred             EEEEEccCCCCCCCCCHHHHhhcCceEEEEEehHhhccCCHHHHHHHHHHHHHHHhCCCcccC--ccceecHHHHHHHHH
Confidence            99998744211           1111111   00     1    2457788899999998764  468899999999999


Q ss_pred             HHHhCCCCeeEEEE
Q 016265          376 YIETNKATGKVVIH  389 (392)
Q Consensus       376 ~l~~~~~~gKvvl~  389 (392)
                      .+.+++..||+|++
T Consensus       310 ~~~~~~~~~kvv~~  323 (323)
T cd05282         310 AAEQPGRGGKVLLT  323 (323)
T ss_pred             HHhcCCCCceEeeC
Confidence            99998888999874

2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossman

>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases

Probab=100.00  E-value=5.8e-34  Score=275.57  Aligned_cols=295  Identities=27%  Similarity=0.381  Sum_probs=236.3

Q ss_pred             eeEEEEcccCCcceEEEeccccCCCCCCCeEEEEEeEEecChHhHHhhcCCCCCCCCCCCCcCCCceeEEEEEeCCCCCC
Q 016265           84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKE  163 (392)
Q Consensus        84 mka~v~~~~~~~~~l~~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~~~p~v~G~e~~G~V~~vG~~v~~  163 (392)
                      |||+++++.+.   +.++ +.+.|+++++||+||+.++++|+.|+..+.|.++   ...|.++|+|++|+|+++|+++..
T Consensus         1 ~~a~~~~~~~~---l~~~-~~~~~~l~~~~v~v~v~~~~~n~~d~~~~~~~~~---~~~~~~~g~~~~G~V~~~g~~v~~   73 (343)
T cd08236           1 MKALVLTGPGD---LRYE-DIPKPEPGPGEVLVKVKACGICGSDIPRYLGTGA---YHPPLVLGHEFSGTVEEVGSGVDD   73 (343)
T ss_pred             CeeEEEecCCc---eeEE-ecCCCCCCCCeEEEEEEEEEECccchHhhcCCCC---CCCCcccCcceEEEEEEECCCCCc
Confidence            79999988754   7777 8899999999999999999999999998877642   234678999999999999999999


Q ss_pred             CCCCCEEEeccccc------------------ccCCCCCCCcceeEEEecCCceeeCCCCCCHHhHhccchhHHHHHHHH
Q 016265          164 FKEGDEVYGDINEK------------------ALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGL  225 (392)
Q Consensus       164 ~~vGdrV~~~~~~~------------------~~~~~~~~G~~a~~~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~al  225 (392)
                      |++||+|++.....                  ...+....|+|++|+.++++.++++|+++++++++.+ ..+.|||+++
T Consensus        74 ~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lP~~~~~~~aa~~-~~~~ta~~~l  152 (343)
T cd08236          74 LAVGDRVAVNPLLPCGKCEYCKKGEYSLCSNYDYIGSRRDGAFAEYVSVPARNLIKIPDHVDYEEAAMI-EPAAVALHAV  152 (343)
T ss_pred             CCCCCEEEEcCCCCCCCChhHHCcChhhCCCcceEecccCCcccceEEechHHeEECcCCCCHHHHHhc-chHHHHHHHH
Confidence            99999999862110                  0111224699999999999999999999999999877 5678999999


Q ss_pred             HhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCe-EEEEeCCcccHHHHHhcCCcEEEeCCCCcccc---C--CCCccE
Q 016265          226 ERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGAS-RVAATSSTRNLEFLKSLGADLAIDYTKDNFED---L--PEKFDV  299 (392)
Q Consensus       226 ~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~-vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~~---~--~~~~D~  299 (392)
                      ....+++|++|+|+| +|.+|++++|+|+.+ |++ ++++++++++.++++++|++.+++++.....+   .  .+++|+
T Consensus       153 ~~~~~~~~~~vlI~g-~g~~g~~~~~lA~~~-G~~~v~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~  230 (343)
T cd08236         153 RLAGITLGDTVVVIG-AGTIGLLAIQWLKIL-GAKRVIAVDIDDEKLAVARELGADDTINPKEEDVEKVRELTEGRGADL  230 (343)
T ss_pred             HhcCCCCCCEEEEEC-CCHHHHHHHHHHHHc-CCCEEEEEcCCHHHHHHHHHcCCCEEecCccccHHHHHHHhCCCCCCE
Confidence            888899999999996 799999999999994 997 87888888899999999999999876544222   1  246999


Q ss_pred             EEecCc---cHHHHHHhcccCCeEEEEcCCCCCC-------------ceEEE---Ee----ecHHHHHHHHHHHHCCCcc
Q 016265          300 VYDAIG---QCDRAVKAIKEGGTVVALTGAVTPP-------------GFRFV---VT----SNGEVLKKLNPYLESGKVK  356 (392)
Q Consensus       300 vid~~G---~~~~~~~~l~~~G~iv~~g~~~~~~-------------~~~~~---~~----~~~~~~~~~~~~l~~g~l~  356 (392)
                      +|||+|   .+..++++|+++|+++.+|......             ...+.   ..    ...+.+++++++++++.+.
T Consensus       231 vld~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  310 (343)
T cd08236         231 VIEAAGSPATIEQALALARPGGKVVLVGIPYGDVTLSEEAFEKILRKELTIQGSWNSYSAPFPGDEWRTALDLLASGKIK  310 (343)
T ss_pred             EEECCCCHHHHHHHHHHhhcCCEEEEEcccCCCcccccCCHHHHHhcCcEEEEEeeccccccchhhHHHHHHHHHcCCCC
Confidence            999987   3588999999999999997443210             11111   11    0145678899999999986


Q ss_pred             cccCCCcccchhhHHHHHHHHHh-CCCCeeEEE
Q 016265          357 PIIDPKGPFPFSQVVEAFSYIET-NKATGKVVI  388 (392)
Q Consensus       357 ~~~~~t~~~~l~~~~~A~~~l~~-~~~~gKvvl  388 (392)
                      +...+...|++++++++++.+.+ +...||+|+
T Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~v~  343 (343)
T cd08236         311 VEPLITHRLPLEDGPAAFERLADREEFSGKVLL  343 (343)
T ss_pred             hHHheeeeecHHHHHHHHHHHHcCCCCeeEEeC
Confidence            32224578999999999999998 566688874

This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast

>cd08276 MDR7 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=100.00  E-value=1.7e-33  Score=270.76  Aligned_cols=300  Identities=33%  Similarity=0.477  Sum_probs=245.9

Q ss_pred             eeEEEEcccCCcceEEEeccccCCCCCCCeEEEEEeEEecChHhHHhhcCCCCCCCCCCCCcCCCceeEEEEEeCCCCCC
Q 016265           84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKE  163 (392)
Q Consensus        84 mka~v~~~~~~~~~l~~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~~~p~v~G~e~~G~V~~vG~~v~~  163 (392)
                      ||||+++..+..+.++++ +.+.|.++++|++|++.++++|++|++...|.++. ....|.++|||++|+|+++|+++.+
T Consensus         1 ~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~-~~~~~~~~g~e~~G~v~~~G~~~~~   78 (336)
T cd08276           1 MKAWRLSGGGGLDNLKLV-EEPVPEPGPGEVLVRVHAVSLNYRDLLILNGRYPP-PVKDPLIPLSDGAGEVVAVGEGVTR   78 (336)
T ss_pred             CeEEEEeccCCCcceEEE-eccCCCCCCCeEEEEEEEEecCHHHHHHhcCCCCC-CCCCCcccccceeEEEEEeCCCCcC
Confidence            799999877655668887 78888899999999999999999999998887643 2346788999999999999999999


Q ss_pred             CCCCCEEEeccccc------------ccCCCCCCCcceeEEEecCCceeeCCCCCCHHhHhccchhHHHHHHHHH-hcCC
Q 016265          164 FKEGDEVYGDINEK------------ALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLE-RTGF  230 (392)
Q Consensus       164 ~~vGdrV~~~~~~~------------~~~~~~~~G~~a~~~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~al~-~~~~  230 (392)
                      +++||+|++.....            ...|....|+|++|+.++.+.++++|+++++.+++.+++++.+||+++. ...+
T Consensus        79 ~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~a~~~~~~~~~a~~~l~~~~~~  158 (336)
T cd08276          79 FKVGDRVVPTFFPNWLDGPPTAEDEASALGGPIDGVLAEYVVLPEEGLVRAPDHLSFEEAATLPCAGLTAWNALFGLGPL  158 (336)
T ss_pred             CCCCCEEEEecccccccccccccccccccccccCceeeeEEEecHHHeEECCCCCCHHHhhhhhHHHHHHHHHHHhhcCC
Confidence            99999999864211            0122223689999999999999999999999999999999999999985 4689


Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCC-Ccccc----C--CCCccEEEec
Q 016265          231 SAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTK-DNFED----L--PEKFDVVYDA  303 (392)
Q Consensus       231 ~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~-~~~~~----~--~~~~D~vid~  303 (392)
                      ++|++|+|+| +|++|++++++|+.. |+++++++.++++++.++++|.+++++... .++.+    .  .+++|++||+
T Consensus       159 ~~g~~vli~g-~g~~g~~~~~~a~~~-G~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~  236 (336)
T cd08276         159 KPGDTVLVQG-TGGVSLFALQFAKAA-GARVIATSSSDEKLERAKALGADHVINYRTTPDWGEEVLKLTGGRGVDHVVEV  236 (336)
T ss_pred             CCCCEEEEEC-CcHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHcCCCEEEcCCcccCHHHHHHHHcCCCCCcEEEEC
Confidence            9999999995 899999999999995 999999999999999999999999998765 33322    1  3579999999


Q ss_pred             Cc--cHHHHHHhcccCCeEEEEcCCCCC-----------CceEEE--EeecHHHHHHHHHHHHCCCcccccCCCcccchh
Q 016265          304 IG--QCDRAVKAIKEGGTVVALTGAVTP-----------PGFRFV--VTSNGEVLKKLNPYLESGKVKPIIDPKGPFPFS  368 (392)
Q Consensus       304 ~G--~~~~~~~~l~~~G~iv~~g~~~~~-----------~~~~~~--~~~~~~~~~~~~~~l~~g~l~~~~~~t~~~~l~  368 (392)
                      +|  ....++++++++|+++.+|.....           ....+.  .......+.+++++++++.+.+.  .++.|+++
T Consensus       237 ~~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~--~~~~~~~~  314 (336)
T cd08276         237 GGPGTLAQSIKAVAPGGVISLIGFLSGFEAPVLLLPLLTKGATLRGIAVGSRAQFEAMNRAIEAHRIRPV--IDRVFPFE  314 (336)
T ss_pred             CChHHHHHHHHhhcCCCEEEEEccCCCCccCcCHHHHhhcceEEEEEecCcHHHHHHHHHHHHcCCcccc--cCcEEeHH
Confidence            87  468899999999999999764311           111111  11235678889999998888764  45789999


Q ss_pred             hHHHHHHHHHhCCCCeeEEEE
Q 016265          369 QVVEAFSYIETNKATGKVVIH  389 (392)
Q Consensus       369 ~~~~A~~~l~~~~~~gKvvl~  389 (392)
                      +++++|+.+.+++..+|++++
T Consensus       315 ~~~~a~~~~~~~~~~~kvv~~  335 (336)
T cd08276         315 EAKEAYRYLESGSHFGKVVIR  335 (336)
T ss_pred             HHHHHHHHHHhCCCCceEEEe
Confidence            999999999998888999875

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>PRK05396 tdh L-threonine 3-dehydrogenase; Validated

Probab=100.00  E-value=5.2e-34  Score=275.83  Aligned_cols=299  Identities=25%  Similarity=0.306  Sum_probs=229.1

Q ss_pred             eeEEEEcccCCcceEEEeccccCCCCCCCeEEEEEeEEecChHhHHhhcCCC-CCCCCCCCCcCCCceeEEEEEeCCCCC
Q 016265           84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKF-KATDSPLPTVPGYDVAGVVVKVGTQVK  162 (392)
Q Consensus        84 mka~v~~~~~~~~~l~~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~g~~-~~~~~~~p~v~G~e~~G~V~~vG~~v~  162 (392)
                      ||++++.+.++  .+++. +.|.|.|+++||+||+.++++|++|++++.+.. ......+|.++|||++|+|+++|++++
T Consensus         1 ~~~~~~~~~~~--~~~~~-~~~~p~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~~~p~~~g~e~~G~V~~vG~~v~   77 (341)
T PRK05396          1 MKALVKLKAEP--GLWLT-DVPVPEPGPNDVLIKVKKTAICGTDVHIYNWDEWAQKTIPVPMVVGHEFVGEVVEVGSEVT   77 (341)
T ss_pred             CceEEEecCCC--ceEEE-ECCCCCCCCCeEEEEEEEEEEcccchHhhcCCCcccccCCCCcccceeeEEEEEEeCCCCC
Confidence            68999987664  37888 899999999999999999999999999876632 111234677899999999999999999


Q ss_pred             CCCCCCEEEeccccccc------------------CCCCCCCcceeEEEecCCceeeCCCCCCHHhHhccchhHHHHHHH
Q 016265          163 EFKEGDEVYGDINEKAL------------------EGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEG  224 (392)
Q Consensus       163 ~~~vGdrV~~~~~~~~~------------------~~~~~~G~~a~~~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~a  224 (392)
                      ++++||+|++.....+.                  .+...+|+|++|+.++.+.++++|+++++++++.+ ..+.+++++
T Consensus        78 ~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~iP~~l~~~~~~~~-~~~~~~~~~  156 (341)
T PRK05396         78 GFKVGDRVSGEGHIVCGHCRNCRAGRRHLCRNTKGVGVNRPGAFAEYLVIPAFNVWKIPDDIPDDLAAIF-DPFGNAVHT  156 (341)
T ss_pred             cCCCCCEEEECCCCCCCCChhhhCcChhhCCCcceeeecCCCcceeeEEechHHeEECcCCCCHHHhHhh-hHHHHHHHH
Confidence            99999999985321110                  01113689999999999999999999999888744 455566665


Q ss_pred             HHhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCC-eEEEEeCCcccHHHHHhcCCcEEEeCCCCcccc----C--CCCc
Q 016265          225 LERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGA-SRVAATSSTRNLEFLKSLGADLAIDYTKDNFED----L--PEKF  297 (392)
Q Consensus       225 l~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~-~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~~----~--~~~~  297 (392)
                      +.. ...+|++|+|.| +|++|++++|+|++ .|+ ++++++.++++.++++++|+++++++++.++.+    .  .+++
T Consensus       157 ~~~-~~~~g~~vlV~~-~g~vg~~~~~la~~-~G~~~v~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~  233 (341)
T PRK05396        157 ALS-FDLVGEDVLITG-AGPIGIMAAAVAKH-VGARHVVITDVNEYRLELARKMGATRAVNVAKEDLRDVMAELGMTEGF  233 (341)
T ss_pred             HHc-CCCCCCeEEEEC-CCHHHHHHHHHHHH-cCCCEEEEEcCCHHHHHHHHHhCCcEEecCccccHHHHHHHhcCCCCC
Confidence            543 346899999986 79999999999999 598 466677788899999999999999887655422    2  3579


Q ss_pred             cEEEecCc---cHHHHHHhcccCCeEEEEcCCCCCCc----------eEEEE---eecHHHHHHHHHHHHCCCcccccCC
Q 016265          298 DVVYDAIG---QCDRAVKAIKEGGTVVALTGAVTPPG----------FRFVV---TSNGEVLKKLNPYLESGKVKPIIDP  361 (392)
Q Consensus       298 D~vid~~G---~~~~~~~~l~~~G~iv~~g~~~~~~~----------~~~~~---~~~~~~~~~~~~~l~~g~l~~~~~~  361 (392)
                      |++|||.|   .+..++++++++|+++.+|.......          +.+..   ......+..+++++.++ ++....+
T Consensus       234 d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  312 (341)
T PRK05396        234 DVGLEMSGAPSAFRQMLDNMNHGGRIAMLGIPPGDMAIDWNKVIFKGLTIKGIYGREMFETWYKMSALLQSG-LDLSPII  312 (341)
T ss_pred             CEEEECCCCHHHHHHHHHHHhcCCEEEEEecCCCCCcccHHHHhhcceEEEEEEccCccchHHHHHHHHHcC-CChhHhe
Confidence            99999987   35889999999999999986432111          11111   11123455678888888 4332235


Q ss_pred             CcccchhhHHHHHHHHHhCCCCeeEEEEeC
Q 016265          362 KGPFPFSQVVEAFSYIETNKATGKVVIHPI  391 (392)
Q Consensus       362 t~~~~l~~~~~A~~~l~~~~~~gKvvl~~~  391 (392)
                      .+.|+++++++||+.+.++. .||++++++
T Consensus       313 ~~~~~l~~~~~a~~~~~~~~-~gk~vv~~~  341 (341)
T PRK05396        313 THRFPIDDFQKGFEAMRSGQ-SGKVILDWD  341 (341)
T ss_pred             EEEEeHHHHHHHHHHHhcCC-CceEEEecC
Confidence            67899999999999998877 799999864

>cd08232 idonate-5-DH L-idonate 5-dehydrogenase

Probab=100.00  E-value=1e-33  Score=273.44  Aligned_cols=289  Identities=26%  Similarity=0.389  Sum_probs=228.1

Q ss_pred             EEEeccccCCCCCCCeEEEEEeEEecChHhHHhhc-CCCCCCCCCCCCcCCCceeEEEEEeCCCCCCCCCCCEEEecccc
Q 016265           98 LKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQ-GKFKATDSPLPTVPGYDVAGVVVKVGTQVKEFKEGDEVYGDINE  176 (392)
Q Consensus        98 l~~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~-g~~~~~~~~~p~v~G~e~~G~V~~vG~~v~~~~vGdrV~~~~~~  176 (392)
                      ++++ +.+.|.++++||+||+.++++|++|++.+. |.++.....+|.++|||++|+|+++|++|++|++||+|++....
T Consensus         9 ~~~~-~~~~p~l~~~~v~I~v~~~~i~~~d~~~~~~~~~~~~~~~~p~~~g~e~~G~v~~vG~~v~~~~~Gd~V~~~~~~   87 (339)
T cd08232           9 LRVE-ERPAPEPGPGEVRVRVAAGGICGSDLHYYQHGGFGTVRLREPMVLGHEVSGVVEAVGPGVTGLAPGQRVAVNPSR   87 (339)
T ss_pred             eEEE-EcCCCCCCCCEEEEEEEEEEECcccHHHHcCCCCCcccccCCeecCccceEEEEeeCCCCCcCCCCCEEEEccCC
Confidence            7888 789999999999999999999999988763 43321122457789999999999999999999999999873210


Q ss_pred             ccc------------------CC-----CCCCCcceeEEEecCCceeeCCCCCCHHhHhccchhHHHHHHHHHhcCCCCC
Q 016265          177 KAL------------------EG-----PKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLERTGFSAG  233 (392)
Q Consensus       177 ~~~------------------~~-----~~~~G~~a~~~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~al~~~~~~~g  233 (392)
                      .+.                  .+     ....|+|++|+.++.+.++++|+++++++++. ..++.++|+++.+....+|
T Consensus        88 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~iP~~~~~~~aa~-~~~~~~a~~~l~~~~~~~~  166 (339)
T cd08232          88 PCGTCDYCRAGRPNLCLNMRFLGSAMRFPHVQGGFREYLVVDASQCVPLPDGLSLRRAAL-AEPLAVALHAVNRAGDLAG  166 (339)
T ss_pred             cCCCChHHhCcCcccCccccceeeccccCCCCCceeeEEEechHHeEECcCCCCHHHhhh-cchHHHHHHHHHhcCCCCC
Confidence            000                  00     11369999999999999999999999999875 5777899999976554499


Q ss_pred             CeEEEEcCCCcHHHHHHHHHHHhcCC-eEEEEeCCcccHHHHHhcCCcEEEeCCCCccccC---CCCccEEEecCcc---
Q 016265          234 KSILVLNGSGGVGSLVIQLAKQVFGA-SRVAATSSTRNLEFLKSLGADLAIDYTKDNFEDL---PEKFDVVYDAIGQ---  306 (392)
Q Consensus       234 ~~VlI~Ga~G~vG~~aiqlak~~~G~-~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~~~---~~~~D~vid~~G~---  306 (392)
                      ++|||.| +|++|++++|+|+.+ |+ ++++++.++++.++++++|++++++++...+.+.   .+++|++|||.|.   
T Consensus       167 ~~VLI~g-~g~vG~~~~~lak~~-G~~~v~~~~~s~~~~~~~~~~g~~~vi~~~~~~~~~~~~~~~~vd~vld~~g~~~~  244 (339)
T cd08232         167 KRVLVTG-AGPIGALVVAAARRA-GAAEIVATDLADAPLAVARAMGADETVNLARDPLAAYAADKGDFDVVFEASGAPAA  244 (339)
T ss_pred             CEEEEEC-CCHHHHHHHHHHHHc-CCcEEEEECCCHHHHHHHHHcCCCEEEcCCchhhhhhhccCCCccEEEECCCCHHH
Confidence            9999986 799999999999995 98 6777778888888889999999998865443222   3469999999873   


Q ss_pred             HHHHHHhcccCCeEEEEcCCCCCC----------ceEEE-EeecHHHHHHHHHHHHCCCcccccCCCcccchhhHHHHHH
Q 016265          307 CDRAVKAIKEGGTVVALTGAVTPP----------GFRFV-VTSNGEVLKKLNPYLESGKVKPIIDPKGPFPFSQVVEAFS  375 (392)
Q Consensus       307 ~~~~~~~l~~~G~iv~~g~~~~~~----------~~~~~-~~~~~~~~~~~~~~l~~g~l~~~~~~t~~~~l~~~~~A~~  375 (392)
                      ++..+++|+++|+++.++......          .+.+. .......++++++++++|.+++...+.+.|+++++++|++
T Consensus       245 ~~~~~~~L~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~a~~  324 (339)
T cd08232         245 LASALRVVRPGGTVVQVGMLGGPVPLPLNALVAKELDLRGSFRFDDEFAEAVRLLAAGRIDVRPLITAVFPLEEAAEAFA  324 (339)
T ss_pred             HHHHHHHHhcCCEEEEEecCCCCccCcHHHHhhcceEEEEEecCHHHHHHHHHHHHcCCCCchhheeEEecHHHHHHHHH
Confidence            578999999999999987543111          11111 1123456888999999999876544567899999999999


Q ss_pred             HHHhCCCCeeEEEEe
Q 016265          376 YIETNKATGKVVIHP  390 (392)
Q Consensus       376 ~l~~~~~~gKvvl~~  390 (392)
                      .+.++...||+|+++
T Consensus       325 ~~~~~~~~gkvvv~~  339 (339)
T cd08232         325 LAADRTRSVKVQLSF  339 (339)
T ss_pred             HHHhCCCceeEEEeC
Confidence            999888889999874

L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai

>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family

Probab=100.00  E-value=3e-33  Score=269.06  Aligned_cols=302  Identities=35%  Similarity=0.520  Sum_probs=244.9

Q ss_pred             eeEEEEcccCCcceEEEeccccCCCCCCCeEEEEEeEEecChHhHHhhcCCCCCCCCCCCCcCCCceeEEEEEeCCCCCC
Q 016265           84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKE  163 (392)
Q Consensus        84 mka~v~~~~~~~~~l~~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~~~p~v~G~e~~G~V~~vG~~v~~  163 (392)
                      |||+++...+....+++. +.+.|.+.+++|+|++.++++|++|++.+.|..+. ...+|.++|||++|+|+++|+++++
T Consensus         1 ~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~-~~~~~~~~g~e~~G~v~~~G~~~~~   78 (342)
T cd08266           1 MKAVVIRGHGGPEVLEYG-DLPEPEPGPDEVLVRVKAAALNHLDLWVRRGMPGI-KLPLPHILGSDGAGVVEAVGPGVTN   78 (342)
T ss_pred             CeEEEEecCCCccceeEe-ecCCCCCCCCeEEEEEEeeecCHHHHHHhcCCCCC-CCCCCeecccceEEEEEEeCCCCCC
Confidence            789999866655567887 77888899999999999999999999998886532 2345789999999999999999999


Q ss_pred             CCCCCEEEeccccc------------------ccCCCCCCCcceeEEEecCCceeeCCCCCCHHhHhccchhHHHHHHHH
Q 016265          164 FKEGDEVYGDINEK------------------ALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGL  225 (392)
Q Consensus       164 ~~vGdrV~~~~~~~------------------~~~~~~~~G~~a~~~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~al  225 (392)
                      +++||+|++.....                  ...|....|+|++|+.++.+.++++|+++++++++.+++++.+||+++
T Consensus        79 ~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~p~~~~~~~a~~~~~~~~~a~~~l  158 (342)
T cd08266          79 VKPGQRVVIYPGISCGRCEYCLAGRENLCAQYGILGEHVDGGYAEYVAVPARNLLPIPDNLSFEEAAAAPLTFLTAWHML  158 (342)
T ss_pred             CCCCCEEEEccccccccchhhccccccccccccccccccCcceeEEEEechHHceeCCCCCCHHHHHhhhhHHHHHHHHH
Confidence            99999999863210                  011222468899999999999999999999999999999999999997


Q ss_pred             -HhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCCcccc------CCCCcc
Q 016265          226 -ERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFED------LPEKFD  298 (392)
Q Consensus       226 -~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~~------~~~~~D  298 (392)
                       +...+.+|++|+|+|+++++|++++++++. .|++++++++++++++.++.+|.+.+++....++.+      ..+++|
T Consensus       159 ~~~~~~~~~~~vlI~g~~~~iG~~~~~~~~~-~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  237 (342)
T cd08266         159 VTRARLRPGETVLVHGAGSGVGSAAIQIAKL-FGATVIATAGSEDKLERAKELGADYVIDYRKEDFVREVRELTGKRGVD  237 (342)
T ss_pred             HHhcCCCCCCEEEEECCCchHHHHHHHHHHH-cCCEEEEEeCCHHHHHHHHHcCCCeEEecCChHHHHHHHHHhCCCCCc
Confidence             457889999999999889999999999999 599999999998999999889988888765543321      134799


Q ss_pred             EEEecCc--cHHHHHHhcccCCeEEEEcCCCCC-C----------ceEEE--EeecHHHHHHHHHHHHCCCcccccCCCc
Q 016265          299 VVYDAIG--QCDRAVKAIKEGGTVVALTGAVTP-P----------GFRFV--VTSNGEVLKKLNPYLESGKVKPIIDPKG  363 (392)
Q Consensus       299 ~vid~~G--~~~~~~~~l~~~G~iv~~g~~~~~-~----------~~~~~--~~~~~~~~~~~~~~l~~g~l~~~~~~t~  363 (392)
                      +++++.|  .++.++++++++|+++.++..... .          ...+.  .......+.+++++++++.+++.  +++
T Consensus       238 ~~i~~~g~~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--~~~  315 (342)
T cd08266         238 VVVEHVGAATWEKSLKSLARGGRLVTCGATTGYEAPIDLRHVFWRQLSILGSTMGTKAELDEALRLVFRGKLKPV--IDS  315 (342)
T ss_pred             EEEECCcHHHHHHHHHHhhcCCEEEEEecCCCCCCCcCHHHHhhcceEEEEEecCCHHHHHHHHHHHHcCCcccc--eee
Confidence            9999998  468899999999999999754311 1          11111  11234578889999999998764  568


Q ss_pred             ccchhhHHHHHHHHHhCCCCeeEEEEe
Q 016265          364 PFPFSQVVEAFSYIETNKATGKVVIHP  390 (392)
Q Consensus       364 ~~~l~~~~~A~~~l~~~~~~gKvvl~~  390 (392)
                      .|+++++++|++.+.++...+|+++++
T Consensus       316 ~~~~~~~~~a~~~~~~~~~~~kvv~~~  342 (342)
T cd08266         316 VFPLEEAAEAHRRLESREQFGKIVLTP  342 (342)
T ss_pred             eEcHHHHHHHHHHHHhCCCCceEEEeC
Confidence            899999999999999888889999864

This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone

>cd08264 Zn_ADH_like2 Alcohol dehydrogenases of the MDR family

Probab=100.00  E-value=7.5e-34  Score=272.67  Aligned_cols=289  Identities=30%  Similarity=0.459  Sum_probs=228.1

Q ss_pred             eeEEEEcccCCcceEEEeccccCCCCCCCeEEEEEeEEecChHhHHhhcCCCCCCCCCCCCcCCCceeEEEEEeCCCCCC
Q 016265           84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKE  163 (392)
Q Consensus        84 mka~v~~~~~~~~~l~~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~~~p~v~G~e~~G~V~~vG~~v~~  163 (392)
                      ||++++..++ .+.++++ +.+.|+++++||+||+.++++|++|++.+.+..   ...+|.++|||++|+|+++|+++++
T Consensus         1 ~~~~~~~~~~-~~~~~~~-~~~~~~~~~~ev~v~v~~~~i~~~d~~~~~~~~---~~~~~~~~g~e~~G~v~~vG~~v~~   75 (325)
T cd08264           1 MKALVFEKSG-IENLKVE-DVKDPKPGPGEVLIRVKMAGVNPVDYNVINAVK---VKPMPHIPGAEFAGVVEEVGDHVKG   75 (325)
T ss_pred             CeeEEeccCC-CCceEEE-eccCCCCCCCeEEEEEEEEEechHHHHHHhCCC---CCCCCeecccceeEEEEEECCCCCC
Confidence            7899998766 4557887 788888999999999999999999998876521   1235778999999999999999999


Q ss_pred             CCCCCEEEeccccc------cc------------CCCCCCCcceeEEEecCCceeeCCCCCCHHhHhccchhHHHHHHHH
Q 016265          164 FKEGDEVYGDINEK------AL------------EGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGL  225 (392)
Q Consensus       164 ~~vGdrV~~~~~~~------~~------------~~~~~~G~~a~~~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~al  225 (392)
                      +++||+|++.....      +.            .+....|+|++|+.++.+.++++|+++++++++.+++++.+||+++
T Consensus        76 ~~~Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~l  155 (325)
T cd08264          76 VKKGDRVVVYNRVFDGTCDMCLSGNEMLCRNGGIIGVVSNGGYAEYIVVPEKNLFKIPDSISDELAASLPVAALTAYHAL  155 (325)
T ss_pred             CCCCCEEEECCCcCCCCChhhcCCCccccCccceeeccCCCceeeEEEcCHHHceeCCCCCCHHHhhhhhhhhHHHHHHH
Confidence            99999998752210      00            0111358999999999999999999999999999999999999999


Q ss_pred             HhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCC--ccccCCCCccEEEec
Q 016265          226 ERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKD--NFEDLPEKFDVVYDA  303 (392)
Q Consensus       226 ~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~--~~~~~~~~~D~vid~  303 (392)
                      ..+++++|++|+|+|++|++|++++++|+.+ |+++++++    +.+.++++|++++++.++.  .+.+..+++|+++|+
T Consensus       156 ~~~~~~~g~~vlI~g~~g~vg~~~~~~a~~~-G~~v~~~~----~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~d~vl~~  230 (325)
T cd08264         156 KTAGLGPGETVVVFGASGNTGIFAVQLAKMM-GAEVIAVS----RKDWLKEFGADEVVDYDEVEEKVKEITKMADVVINS  230 (325)
T ss_pred             HhcCCCCCCEEEEECCCchHHHHHHHHHHHc-CCeEEEEe----HHHHHHHhCCCeeecchHHHHHHHHHhCCCCEEEEC
Confidence            8888999999999998899999999999994 99888775    3477788999999887541  122222689999999


Q ss_pred             Cc--cHHHHHHhcccCCeEEEEcCCC-CCCceE----------EE--EeecHHHHHHHHHHHHCCCcccccCCCcccchh
Q 016265          304 IG--QCDRAVKAIKEGGTVVALTGAV-TPPGFR----------FV--VTSNGEVLKKLNPYLESGKVKPIIDPKGPFPFS  368 (392)
Q Consensus       304 ~G--~~~~~~~~l~~~G~iv~~g~~~-~~~~~~----------~~--~~~~~~~~~~~~~~l~~g~l~~~~~~t~~~~l~  368 (392)
                      +|  .+..++++++++|+++.++... ....++          ..  .....+.+.++++++...+  .  .+.+.|+++
T Consensus       231 ~g~~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~--~~~~~~~~~  306 (325)
T cd08264         231 LGSSFWDLSLSVLGRGGRLVTFGTLTGGEVKLDLSDLYSKQISIIGSTGGTRKELLELVKIAKDLK--V--KVWKTFKLE  306 (325)
T ss_pred             CCHHHHHHHHHhhccCCEEEEEecCCCCCCccCHHHHhhcCcEEEEccCCCHHHHHHHHHHHHcCC--c--eeEEEEcHH
Confidence            98  4688999999999999997542 111111          00  0112457888889886443  2  245789999


Q ss_pred             hHHHHHHHHHhCCCCeeE
Q 016265          369 QVVEAFSYIETNKATGKV  386 (392)
Q Consensus       369 ~~~~A~~~l~~~~~~gKv  386 (392)
                      |+++||+.+.++...+|+
T Consensus       307 ~~~~a~~~~~~~~~~~kv  324 (325)
T cd08264         307 EAKEALKELFSKERDGRI  324 (325)
T ss_pred             HHHHHHHHHHcCCCcccc
Confidence            999999999988777775

This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the clo

>cd08288 MDR_yhdh Yhdh putative quinone oxidoreductases

Probab=100.00  E-value=3.4e-33  Score=267.77  Aligned_cols=296  Identities=26%  Similarity=0.351  Sum_probs=237.2

Q ss_pred             eeEEEEcccCCcceEEEeccccCCCCCCCeEEEEEeEEecChHhHHhhcCCCCCCCCCCCCcCCCceeEEEEEeCCCCCC
Q 016265           84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKE  163 (392)
Q Consensus        84 mka~v~~~~~~~~~l~~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~~~p~v~G~e~~G~V~~vG~~v~~  163 (392)
                      |||+++.++|.++.++++ +.+.|.|+++||+||+.++++|++|++.+.|.++. ...+|.++|||++|+|++  +++++
T Consensus         1 ~~a~~~~~~~~~~~~~~~-~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~-~~~~~~~~g~e~~G~V~~--~~~~~   76 (324)
T cd08288           1 FKALVLEKDDGGTSAELR-ELDESDLPEGDVTVEVHYSTLNYKDGLAITGKGGI-VRTFPLVPGIDLAGTVVE--SSSPR   76 (324)
T ss_pred             CeeEEEeccCCCcceEEE-ECCCCCCCCCeEEEEEEEEecCHHHHHHhcCCccc-cCCCCCccccceEEEEEe--CCCCC
Confidence            799999988876668888 89999999999999999999999999988876531 123577899999999998  77788


Q ss_pred             CCCCCEEEecccccccCCCCCCCcceeEEEecCCceeeCCCCCCHHhHhccchhHHHHHHHHH---hcCCC-CCCeEEEE
Q 016265          164 FKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLE---RTGFS-AGKSILVL  239 (392)
Q Consensus       164 ~~vGdrV~~~~~~~~~~~~~~~G~~a~~~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~al~---~~~~~-~g~~VlI~  239 (392)
                      +++||+|++...   ..+....|+|++|+.++.+.++++|+++++++++.++++++++++++.   ..... +|++|+|+
T Consensus        77 ~~~Gd~V~~~~~---~~~~~~~g~~~~~~~v~~~~~~~lp~~~~~~~~~~~~~~~~ta~~~~~~~~~~~~~~~~~~vlI~  153 (324)
T cd08288          77 FKPGDRVVLTGW---GVGERHWGGYAQRARVKADWLVPLPEGLSARQAMAIGTAGFTAMLCVMALEDHGVTPGDGPVLVT  153 (324)
T ss_pred             CCCCCEEEECCc---cCCCCCCCcceeEEEEchHHeeeCCCCCCHHHHhhhhhHHHHHHHHHHHHhhcCcCCCCCEEEEE
Confidence            999999998531   011113589999999999999999999999999999999888887764   45555 67899999


Q ss_pred             cCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCCcc--ccC-CCCccEEEecCcc--HHHHHHhc
Q 016265          240 NGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNF--EDL-PEKFDVVYDAIGQ--CDRAVKAI  314 (392)
Q Consensus       240 Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~--~~~-~~~~D~vid~~G~--~~~~~~~l  314 (392)
                      |++|++|++++|+|+.+ |+++++++.+++|.+.++++|+++++++.+...  ... ..++|.+||++|.  ...++..+
T Consensus       154 ga~g~vg~~~~~~A~~~-G~~vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~  232 (324)
T cd08288         154 GAAGGVGSVAVALLARL-GYEVVASTGRPEEADYLRSLGASEIIDRAELSEPGRPLQKERWAGAVDTVGGHTLANVLAQT  232 (324)
T ss_pred             CCCcHHHHHHHHHHHHC-CCeEEEEeCCHHHHHHHHhcCCCEEEEcchhhHhhhhhccCcccEEEECCcHHHHHHHHHHh
Confidence            98899999999999995 999999999999999999999999998865332  111 3368999999984  56788889


Q ss_pred             ccCCeEEEEcCCCC-----------CCceEEEE----e----ecHHHHHHHHHHHHCCCcccccCCCcccchhhHHHHHH
Q 016265          315 KEGGTVVALTGAVT-----------PPGFRFVV----T----SNGEVLKKLNPYLESGKVKPIIDPKGPFPFSQVVEAFS  375 (392)
Q Consensus       315 ~~~G~iv~~g~~~~-----------~~~~~~~~----~----~~~~~~~~~~~~l~~g~l~~~~~~t~~~~l~~~~~A~~  375 (392)
                      +.+|+++.+|....           .....+..    .    ...+.++.+.+++..+.+++.   ++.|+++++++||+
T Consensus       233 ~~~g~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i---~~~~~~~~~~~a~~  309 (324)
T cd08288         233 RYGGAVAACGLAGGADLPTTVMPFILRGVTLLGIDSVMAPIERRRAAWARLARDLDPALLEAL---TREIPLADVPDAAE  309 (324)
T ss_pred             cCCCEEEEEEecCCCCCCcchhhhhccccEEEEEEeecccchhhHHHHHHHHHHHhcCCcccc---ceeecHHHHHHHHH
Confidence            99999998875321           01111110    0    113456777888888888653   57899999999999


Q ss_pred             HHHhCCCCeeEEEEe
Q 016265          376 YIETNKATGKVVIHP  390 (392)
Q Consensus       376 ~l~~~~~~gKvvl~~  390 (392)
                      .+.+++..||+++++
T Consensus       310 ~~~~~~~~~~vvv~~  324 (324)
T cd08288         310 AILAGQVRGRVVVDV  324 (324)
T ss_pred             HHhcCCccCeEEEeC
Confidence            999999999999863

Yhdh putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catal

>cd08272 MDR6 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=100.00  E-value=4.5e-33  Score=266.10  Aligned_cols=297  Identities=41%  Similarity=0.665  Sum_probs=242.8

Q ss_pred             eeEEEEcccCCcceEEEeccccCCCCCCCeEEEEEeEEecChHhHHhhcCCCCCCCCCCCCcCCCceeEEEEEeCCCCCC
Q 016265           84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKE  163 (392)
Q Consensus        84 mka~v~~~~~~~~~l~~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~~~p~v~G~e~~G~V~~vG~~v~~  163 (392)
                      |||+++.+++..+.++++ +.+.|.+.+++|+|++.++++|++|++...|.+. .....|.++|||++|+|+++|+++.+
T Consensus         1 ~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~-~~~~~~~~~g~e~~G~v~~~G~~~~~   78 (326)
T cd08272           1 MKALVLESFGGPEVFELR-EVPRPQPGPGQVLVRVHASGVNPLDTKIRRGGAA-ARPPLPAILGCDVAGVVEAVGEGVTR   78 (326)
T ss_pred             CeEEEEccCCCchheEEe-ecCCCCCCCCeEEEEEEEEecCHHHHHHhCCCCC-CCCCCCcccccceeEEEEEeCCCCCC
Confidence            799999988877668887 7788889999999999999999999998887653 22335778999999999999999999


Q ss_pred             CCCCCEEEecccccccCCCCCCCcceeEEEecCCceeeCCCCCCHHhHhccchhHHHHHHHH-HhcCCCCCCeEEEEcCC
Q 016265          164 FKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGL-ERTGFSAGKSILVLNGS  242 (392)
Q Consensus       164 ~~vGdrV~~~~~~~~~~~~~~~G~~a~~~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~al-~~~~~~~g~~VlI~Ga~  242 (392)
                      +++||+|++.....+    ...|+|++|+.++...++++|+++++.+++.+++.+.+||+++ +..++++|++|+|+|++
T Consensus        79 ~~~Gd~V~~~~~~~~----~~~g~~~~~~~v~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~vli~g~~  154 (326)
T cd08272          79 FRVGDEVYGCAGGLG----GLQGSLAEYAVVDARLLALKPANLSMREAAALPLVGITAWEGLVDRAAVQAGQTVLIHGGA  154 (326)
T ss_pred             CCCCCEEEEccCCcC----CCCCceeEEEEecHHHcccCCCCCCHHHHHHhHHHHHHHHHHHHHhcCCCCCCEEEEEcCC
Confidence            999999998752111    1258999999999999999999999999999999999999997 56889999999999999


Q ss_pred             CcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCCcccc----C--CCCccEEEecCc--cHHHHHHhc
Q 016265          243 GGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFED----L--PEKFDVVYDAIG--QCDRAVKAI  314 (392)
Q Consensus       243 G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~~----~--~~~~D~vid~~G--~~~~~~~~l  314 (392)
                      |++|++++++|+. .|+++++++++ ++.++++++|++.+++.... +.+    .  .+++|+++||+|  ....+++++
T Consensus       155 ~~~g~~~~~~a~~-~g~~v~~~~~~-~~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~d~v~~~~~~~~~~~~~~~l  231 (326)
T cd08272         155 GGVGHVAVQLAKA-AGARVYATASS-EKAAFARSLGADPIIYYRET-VVEYVAEHTGGRGFDVVFDTVGGETLDASFEAV  231 (326)
T ss_pred             CcHHHHHHHHHHH-cCCEEEEEech-HHHHHHHHcCCCEEEecchh-HHHHHHHhcCCCCCcEEEECCChHHHHHHHHHh
Confidence            9999999999999 59999988888 88999999999988887654 322    1  347999999988  357789999


Q ss_pred             ccCCeEEEEcCCCC-------CCceEE--EE-e----------ecHHHHHHHHHHHHCCCcccccCCCcccchhhHHHHH
Q 016265          315 KEGGTVVALTGAVT-------PPGFRF--VV-T----------SNGEVLKKLNPYLESGKVKPIIDPKGPFPFSQVVEAF  374 (392)
Q Consensus       315 ~~~G~iv~~g~~~~-------~~~~~~--~~-~----------~~~~~~~~~~~~l~~g~l~~~~~~t~~~~l~~~~~A~  374 (392)
                      +++|+++.++....       .....+  .. .          .....+.++++++.++.+++.+.+ +.|++++++++|
T Consensus       232 ~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~~~~~~~~~  310 (326)
T cd08272         232 ALYGRVVSILGGATHDLAPLSFRNATYSGVFTLLPLLTGEGRAHHGEILREAARLVERGQLRPLLDP-RTFPLEEAAAAH  310 (326)
T ss_pred             ccCCEEEEEecCCccchhhHhhhcceEEEEEcccccccccchhhHHHHHHHHHHHHHCCCccccccc-ceecHHHHHHHH
Confidence            99999998864420       011111  11 0          013567888899999988765322 789999999999


Q ss_pred             HHHHhCCCCeeEEEEe
Q 016265          375 SYIETNKATGKVVIHP  390 (392)
Q Consensus       375 ~~l~~~~~~gKvvl~~  390 (392)
                      +.+.++...+|+++.+
T Consensus       311 ~~~~~~~~~~~vv~~~  326 (326)
T cd08272         311 ARLESGSARGKIVIDV  326 (326)
T ss_pred             HHHHcCCcccEEEEEC
Confidence            9999888889999863

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08273 MDR8 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=100.00  E-value=3.4e-33  Score=268.46  Aligned_cols=288  Identities=33%  Similarity=0.529  Sum_probs=239.3

Q ss_pred             eEEEEcccCCcceEEEeccccCCCCCCCeEEEEEeEEecChHhHHhhcCCCCCCCCCCCCcCCCceeEEEEEeCCCCCCC
Q 016265           85 KAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKEF  164 (392)
Q Consensus        85 ka~v~~~~~~~~~l~~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~~~p~v~G~e~~G~V~~vG~~v~~~  164 (392)
                      ||+++...+.++.+++. +.+.|.|.++||+|++.++++|++|+..+.|.++.. ..+|.++|||++|+|+++|+++..|
T Consensus         2 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~-~~~~~~~g~e~~G~v~~vG~~v~~~   79 (331)
T cd08273           2 REVVVTRRGGPEVLKVV-EADLPEPAAGEVVVKVEASGVSFADVQMRRGLYPDQ-PPLPFTPGYDLVGRVDALGSGVTGF   79 (331)
T ss_pred             eeEEEccCCCcccEEEe-ccCCCCCCCCeEEEEEEEEecCHHHHHHhCCCCCCC-CCCCcccccceEEEEEEeCCCCccC
Confidence            78999988877778888 889999999999999999999999999988876422 3468899999999999999999999


Q ss_pred             CCCCEEEecccccccCCCCCCCcceeEEEecCCceeeCCCCCCHHhHhccchhHHHHHHHHHh-cCCCCCCeEEEEcCCC
Q 016265          165 KEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLER-TGFSAGKSILVLNGSG  243 (392)
Q Consensus       165 ~vGdrV~~~~~~~~~~~~~~~G~~a~~~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~al~~-~~~~~g~~VlI~Ga~G  243 (392)
                      ++||+|++...         .|+|++|+.++.+.++++|+++++++++.+++++.+||+++.. ..+.+|++|+|+|+.|
T Consensus        80 ~~Gd~V~~~~~---------~g~~~~~~~~~~~~~~~~p~~~~~~~a~~~~~~~~ta~~~l~~~~~~~~g~~vlI~g~~g  150 (331)
T cd08273          80 EVGDRVAALTR---------VGGNAEYINLDAKYLVPVPEGVDAAEAVCLVLNYVTAYQMLHRAAKVLTGQRVLIHGASG  150 (331)
T ss_pred             CCCCEEEEeCC---------CcceeeEEEechHHeEECCCCCCHHHHHhhhhHHHHHHHHHHHhcCCCCCCEEEEECCCc
Confidence            99999998642         4899999999999999999999999999999999999999854 6899999999999889


Q ss_pred             cHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCCcccc---CCCCccEEEecCc--cHHHHHHhcccCC
Q 016265          244 GVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFED---LPEKFDVVYDAIG--QCDRAVKAIKEGG  318 (392)
Q Consensus       244 ~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~~---~~~~~D~vid~~G--~~~~~~~~l~~~G  318 (392)
                      ++|++++++|+. .|++++.++. +++.+.++++|++. ++....++.+   ..+++|+++||+|  ....++++++++|
T Consensus       151 ~ig~~~~~~a~~-~g~~v~~~~~-~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~d~vl~~~~~~~~~~~~~~l~~~g  227 (331)
T cd08273         151 GVGQALLELALL-AGAEVYGTAS-ERNHAALRELGATP-IDYRTKDWLPAMLTPGGVDVVFDGVGGESYEESYAALAPGG  227 (331)
T ss_pred             HHHHHHHHHHHH-cCCEEEEEeC-HHHHHHHHHcCCeE-EcCCCcchhhhhccCCCceEEEECCchHHHHHHHHHhcCCC
Confidence            999999999999 5999888887 88889999999754 4544333221   2347999999988  3678899999999


Q ss_pred             eEEEEcCCCCCCc-------------------eE-------E-EEe--------ecHHHHHHHHHHHHCCCcccccCCCc
Q 016265          319 TVVALTGAVTPPG-------------------FR-------F-VVT--------SNGEVLKKLNPYLESGKVKPIIDPKG  363 (392)
Q Consensus       319 ~iv~~g~~~~~~~-------------------~~-------~-~~~--------~~~~~~~~~~~~l~~g~l~~~~~~t~  363 (392)
                      +++.+|.......                   ..       + ...        ...+.++++++++++|.+++.  +++
T Consensus       228 ~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~--~~~  305 (331)
T cd08273         228 TLVCYGGNSSLLQGRRSLAALGSLLARLAKLKLLPTGRRATFYYVWRDRAEDPKLFRQDLTELLDLLAKGKIRPK--IAK  305 (331)
T ss_pred             EEEEEccCCCCCCccccccchhhhhhhhhhhcceeccceeEEEeechhcccCHHHHHHHHHHHHHHHHCCCccCC--cce
Confidence            9999976542110                   00       0 000        013567888999999998764  567


Q ss_pred             ccchhhHHHHHHHHHhCCCCeeEEE
Q 016265          364 PFPFSQVVEAFSYIETNKATGKVVI  388 (392)
Q Consensus       364 ~~~l~~~~~A~~~l~~~~~~gKvvl  388 (392)
                      .|++++++++|+.+.++...||+|+
T Consensus       306 ~~~~~~~~~a~~~~~~~~~~gkvv~  330 (331)
T cd08273         306 RLPLSEVAEAHRLLESGKVVGKIVL  330 (331)
T ss_pred             EEcHHHHHHHHHHHHcCCCcceEEe
Confidence            8999999999999998888899886

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd05281 TDH Threonine dehydrogenase

Probab=100.00  E-value=1.7e-33  Score=272.36  Aligned_cols=299  Identities=29%  Similarity=0.358  Sum_probs=232.6

Q ss_pred             eeEEEEcccCCcceEEEeccccCCCCCCCeEEEEEeEEecChHhHHhhcCCC-CCCCCCCCCcCCCceeEEEEEeCCCCC
Q 016265           84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKF-KATDSPLPTVPGYDVAGVVVKVGTQVK  162 (392)
Q Consensus        84 mka~v~~~~~~~~~l~~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~g~~-~~~~~~~p~v~G~e~~G~V~~vG~~v~  162 (392)
                      ||+++++.++.  .+++. +.+.|.|+++|++||+.++++|+.|++.+.+.. ......+|.++|||++|+|+.+|+++.
T Consensus         1 ~~~~~~~~~~~--~~~~~-~~~~~~~~~~~v~V~v~~~~~~~~d~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~~G~~v~   77 (341)
T cd05281           1 MKAIVKTKAGP--GAELV-EVPVPKPGPGEVLIKVLAASICGTDVHIYEWDEWAQSRIKPPLIFGHEFAGEVVEVGEGVT   77 (341)
T ss_pred             CcceEEecCCC--ceEEE-eCCCCCCCCCeEEEEEEEEEEcccchHHHcCCCCccccCCCCcccccceEEEEEEECCCCC
Confidence            78999987775  37888 889999999999999999999999998765532 111223567899999999999999999


Q ss_pred             CCCCCCEEEecccccc------------------cCCCCCCCcceeEEEecCCceeeCCCCCCHHhHhccchhHHHHHHH
Q 016265          163 EFKEGDEVYGDINEKA------------------LEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEG  224 (392)
Q Consensus       163 ~~~vGdrV~~~~~~~~------------------~~~~~~~G~~a~~~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~a  224 (392)
                      .+++||+|++.....+                  ..+....|+|++|++++.+.++++|++++++.+ +++..+.+++++
T Consensus        78 ~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~lP~~~~~~~a-~~~~~~~~a~~~  156 (341)
T cd05281          78 RVKVGDYVSAETHIVCGKCYQCRTGNYHVCQNTKILGVDTDGCFAEYVVVPEENLWKNDKDIPPEIA-SIQEPLGNAVHT  156 (341)
T ss_pred             CCCCCCEEEECCccCCCCChHHHCcCcccCcccceEeccCCCcceEEEEechHHcEECcCCCCHHHh-hhhhHHHHHHHH
Confidence            9999999988521100                  001113589999999999999999999998544 566777788888


Q ss_pred             HHhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCC-eEEEEeCCcccHHHHHhcCCcEEEeCCCCcccc-----CCCCcc
Q 016265          225 LERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGA-SRVAATSSTRNLEFLKSLGADLAIDYTKDNFED-----LPEKFD  298 (392)
Q Consensus       225 l~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~-~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~~-----~~~~~D  298 (392)
                      +. ...++|++|+|.| +|++|++++|+|+. .|+ ++++++.+++|.+.++++|++++++++..++..     ..+++|
T Consensus       157 ~~-~~~~~g~~vlV~g-~g~vg~~~~~la~~-~G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vd  233 (341)
T cd05281         157 VL-AGDVSGKSVLITG-CGPIGLMAIAVAKA-AGASLVIASDPNPYRLELAKKMGADVVINPREEDVVEVKSVTDGTGVD  233 (341)
T ss_pred             HH-hcCCCCCEEEEEC-CCHHHHHHHHHHHH-cCCcEEEEECCCHHHHHHHHHhCcceeeCcccccHHHHHHHcCCCCCC
Confidence            75 4567899999986 79999999999998 498 577777788899999999999998876554421     135799


Q ss_pred             EEEecCcc---HHHHHHhcccCCeEEEEcCCCCCCc-----------eEEEE---eecHHHHHHHHHHHHCCCcccccCC
Q 016265          299 VVYDAIGQ---CDRAVKAIKEGGTVVALTGAVTPPG-----------FRFVV---TSNGEVLKKLNPYLESGKVKPIIDP  361 (392)
Q Consensus       299 ~vid~~G~---~~~~~~~l~~~G~iv~~g~~~~~~~-----------~~~~~---~~~~~~~~~~~~~l~~g~l~~~~~~  361 (392)
                      ++|||+|.   ...++++++++|+++.++.......           +.+..   ....+.+.++++++++|.+.+...+
T Consensus       234 ~vld~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~  313 (341)
T cd05281         234 VVLEMSGNPKAIEQGLKALTPGGRVSILGLPPGPVDIDLNNLVIFKGLTVQGITGRKMFETWYQVSALLKSGKVDLSPVI  313 (341)
T ss_pred             EEEECCCCHHHHHHHHHHhccCCEEEEEccCCCCcccccchhhhccceEEEEEecCCcchhHHHHHHHHHcCCCChhHhe
Confidence            99999873   5788999999999999875431111           11111   1123457788999999998754345


Q ss_pred             CcccchhhHHHHHHHHHhCCCCeeEEEEe
Q 016265          362 KGPFPFSQVVEAFSYIETNKATGKVVIHP  390 (392)
Q Consensus       362 t~~~~l~~~~~A~~~l~~~~~~gKvvl~~  390 (392)
                      +..++++++++||+.+.+++ .||+|++|
T Consensus       314 ~~~~~~~~~~~a~~~~~~~~-~gk~vv~~  341 (341)
T cd05281         314 THKLPLEDFEEAFELMRSGK-CGKVVLYP  341 (341)
T ss_pred             EEEecHHHHHHHHHHHhcCC-CceEEecC
Confidence            67899999999999999998 89999875

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.

>cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases

Probab=100.00  E-value=5.1e-33  Score=263.50  Aligned_cols=294  Identities=45%  Similarity=0.683  Sum_probs=242.2

Q ss_pred             eeEEEEcccCCcceEEEeccccCCCCCCCeEEEEEeEEecChHhHHhhcCCCCC-CCCCCCCcCCCceeEEEEEeCCCCC
Q 016265           84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKA-TDSPLPTVPGYDVAGVVVKVGTQVK  162 (392)
Q Consensus        84 mka~v~~~~~~~~~l~~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~-~~~~~p~v~G~e~~G~V~~vG~~v~  162 (392)
                      |||++++.++..+.+.++ +.+.|.++++||+|++.++++|+.|++.+.|.+.. ....+|.++|||++|+|+++|+++.
T Consensus         1 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~g~e~~G~v~~~G~~~~   79 (309)
T cd05289           1 MKAVRIHEYGGPEVLELA-DVPTPEPGPGEVLVKVHAAGVNPVDLKIREGLLKAAFPLTLPLIPGHDVAGVVVAVGPGVT   79 (309)
T ss_pred             CceEEEcccCCccceeec-ccCCCCCCCCeEEEEEEEeeCCHHHHHHhcCCccccCCCCCCCccccceeEEEEeeCCCCC
Confidence            789999888876656777 77788899999999999999999999988876421 1234578999999999999999999


Q ss_pred             CCCCCCEEEecccccccCCCCCCCcceeEEEecCCceeeCCCCCCHHhHhccchhHHHHHHHHHhc-CCCCCCeEEEEcC
Q 016265          163 EFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLERT-GFSAGKSILVLNG  241 (392)
Q Consensus       163 ~~~vGdrV~~~~~~~~~~~~~~~G~~a~~~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~al~~~-~~~~g~~VlI~Ga  241 (392)
                      ++++||+|++....      ...|+|++|+.++...++++|+++++..++.+++.+.++|+++... .+.+|++|+|+|+
T Consensus        80 ~~~~G~~V~~~~~~------~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~vlv~g~  153 (309)
T cd05289          80 GFKVGDEVFGMTPF------TRGGAYAEYVVVPADELALKPANLSFEEAAALPLAGLTAWQALFELGGLKAGQTVLIHGA  153 (309)
T ss_pred             CCCCCCEEEEccCC------CCCCcceeEEEecHHHhccCCCCCCHHHHHhhhHHHHHHHHHHHhhcCCCCCCEEEEecC
Confidence            99999999986421      1248999999999999999999999999999999999999998654 4899999999998


Q ss_pred             CCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCCccc--cCCCCccEEEecCcc--HHHHHHhcccC
Q 016265          242 SGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFE--DLPEKFDVVYDAIGQ--CDRAVKAIKEG  317 (392)
Q Consensus       242 ~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~--~~~~~~D~vid~~G~--~~~~~~~l~~~  317 (392)
                      .|++|++++++++. .|+++++++.++ +.+.++++|.+.+++....++.  ...+++|+++|++|.  ...++++++++
T Consensus       154 ~g~~g~~~~~~a~~-~g~~v~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~d~v~~~~~~~~~~~~~~~l~~~  231 (309)
T cd05289         154 AGGVGSFAVQLAKA-RGARVIATASAA-NADFLRSLGADEVIDYTKGDFERAAAPGGVDAVLDTVGGETLARSLALVKPG  231 (309)
T ss_pred             CchHHHHHHHHHHH-cCCEEEEEecch-hHHHHHHcCCCEEEeCCCCchhhccCCCCceEEEECCchHHHHHHHHHHhcC
Confidence            89999999999999 599998888777 8888899999888887665443  233579999999984  58899999999


Q ss_pred             CeEEEEcCCCCCC------ceEEE---EeecHHHHHHHHHHHHCCCcccccCCCcccchhhHHHHHHHHHhCCCCeeEEE
Q 016265          318 GTVVALTGAVTPP------GFRFV---VTSNGEVLKKLNPYLESGKVKPIIDPKGPFPFSQVVEAFSYIETNKATGKVVI  388 (392)
Q Consensus       318 G~iv~~g~~~~~~------~~~~~---~~~~~~~~~~~~~~l~~g~l~~~~~~t~~~~l~~~~~A~~~l~~~~~~gKvvl  388 (392)
                      |+++.++......      ...+.   .......+.+++++++++.+++.  +++.|++++++++|+.+.++...+|+++
T Consensus       232 g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~kvv~  309 (309)
T cd05289         232 GRLVSIAGPPPAEQAAKRRGVRAGFVFVEPDGEQLAELAELVEAGKLRPV--VDRVFPLEDAAEAHERLESGHARGKVVL  309 (309)
T ss_pred             cEEEEEcCCCcchhhhhhccceEEEEEecccHHHHHHHHHHHHCCCEEEe--eccEEcHHHHHHHHHHHHhCCCCCcEeC
Confidence            9999997643211      11111   11126778999999999988754  5788999999999999998887788874

Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et

>cd05285 sorbitol_DH Sorbitol dehydrogenase

Probab=100.00  E-value=2.7e-33  Score=271.12  Aligned_cols=295  Identities=27%  Similarity=0.357  Sum_probs=229.4

Q ss_pred             EEEcccCCcceEEEeccccCCCCCCCeEEEEEeEEecChHhHHhhcC-CCCCCCCCCCCcCCCceeEEEEEeCCCCCCCC
Q 016265           87 WLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQG-KFKATDSPLPTVPGYDVAGVVVKVGTQVKEFK  165 (392)
Q Consensus        87 ~v~~~~~~~~~l~~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~g-~~~~~~~~~p~v~G~e~~G~V~~vG~~v~~~~  165 (392)
                      +++.+.+.   ++++ +.+.|.+.++||+|++.++++|+.|++.+.+ ........+|.++|||++|+|+++|+++.+++
T Consensus         2 ~~~~~~~~---~~~~-~~~~~~l~~~~vlV~v~~~~l~~~d~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~   77 (343)
T cd05285           2 AVLHGPGD---LRLE-ERPIPEPGPGEVLVRVRAVGICGSDVHYYKHGRIGDFVVKEPMVLGHESAGTVVAVGSGVTHLK   77 (343)
T ss_pred             ceEecCCc---eeEE-ECCCCCCCCCeEEEEEEEeeEccccHHHHccCCCcccCCCCCcccCcceeEEEEeeCCCCCCCC
Confidence            45555533   7888 8899999999999999999999999987642 22111123567899999999999999999999


Q ss_pred             CCCEEEeccccc------c------------c-CCCCCCCcceeEEEecCCceeeCCCCCCHHhHhccchhHHHHHHHHH
Q 016265          166 EGDEVYGDINEK------A------------L-EGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLE  226 (392)
Q Consensus       166 vGdrV~~~~~~~------~------------~-~~~~~~G~~a~~~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~al~  226 (392)
                      +||+|++.....      +            . ......|+|++|++++.+.++++|+++++++++.+ .++.+|+++++
T Consensus        78 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~lP~~~~~~~aa~~-~~~~~a~~~~~  156 (343)
T cd05285          78 VGDRVAIEPGVPCRTCEFCKSGRYNLCPDMRFAATPPVDGTLCRYVNHPADFCHKLPDNVSLEEGALV-EPLSVGVHACR  156 (343)
T ss_pred             CCCEEEEccccCCCCChhHhCcCcccCcCccccccccCCCceeeeEEecHHHcEECcCCCCHHHhhhh-hHHHHHHHHHH
Confidence            999998632100      0            0 00113689999999999999999999999998876 57788999988


Q ss_pred             hcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCe-EEEEeCCcccHHHHHhcCCcEEEeCCCCcc---c----cC--CCC
Q 016265          227 RTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGAS-RVAATSSTRNLEFLKSLGADLAIDYTKDNF---E----DL--PEK  296 (392)
Q Consensus       227 ~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~-vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~---~----~~--~~~  296 (392)
                      .+.+++|++|+|+| +|++|++++|+||. .|++ ++++++++++.++++++|+++++++++.++   .    +.  .++
T Consensus       157 ~~~~~~g~~vlI~g-~g~vG~~a~~lak~-~G~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~~~~~~~~~~  234 (343)
T cd05285         157 RAGVRPGDTVLVFG-AGPIGLLTAAVAKA-FGATKVVVTDIDPSRLEFAKELGATHTVNVRTEDTPESAEKIAELLGGKG  234 (343)
T ss_pred             hcCCCCCCEEEEEC-CCHHHHHHHHHHHH-cCCcEEEEECCCHHHHHHHHHcCCcEEeccccccchhHHHHHHHHhCCCC
Confidence            89999999999986 79999999999999 5998 777778888999999999999999876553   1    11  346


Q ss_pred             ccEEEecCcc---HHHHHHhcccCCeEEEEcCCCCCCc----------eEEE-EeecHHHHHHHHHHHHCCCcccccCCC
Q 016265          297 FDVVYDAIGQ---CDRAVKAIKEGGTVVALTGAVTPPG----------FRFV-VTSNGEVLKKLNPYLESGKVKPIIDPK  362 (392)
Q Consensus       297 ~D~vid~~G~---~~~~~~~l~~~G~iv~~g~~~~~~~----------~~~~-~~~~~~~~~~~~~~l~~g~l~~~~~~t  362 (392)
                      +|++|||+|.   +..++++++++|+++.++.......          +.+. .....+.+++++++++++.+.......
T Consensus       235 ~d~vld~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~  314 (343)
T cd05285         235 PDVVIECTGAESCIQTAIYATRPGGTVVLVGMGKPEVTLPLSAASLREIDIRGVFRYANTYPTAIELLASGKVDVKPLIT  314 (343)
T ss_pred             CCEEEECCCCHHHHHHHHHHhhcCCEEEEEccCCCCCccCHHHHhhCCcEEEEeccChHHHHHHHHHHHcCCCCchHhEE
Confidence            9999999883   5789999999999999875432111          1111 111236788899999999876432345


Q ss_pred             cccchhhHHHHHHHHHhCC-CCeeEEE
Q 016265          363 GPFPFSQVVEAFSYIETNK-ATGKVVI  388 (392)
Q Consensus       363 ~~~~l~~~~~A~~~l~~~~-~~gKvvl  388 (392)
                      +.|+++++.+|++.+.+++ ..+|++|
T Consensus       315 ~~~~l~~~~~a~~~~~~~~~~~~k~~~  341 (343)
T cd05285         315 HRFPLEDAVEAFETAAKGKKGVIKVVI  341 (343)
T ss_pred             EEEeHHHHHHHHHHHHcCCCCeeEEEE
Confidence            7899999999999999885 4589987

Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>cd08253 zeta_crystallin Zeta-crystallin with NADP-dependent quinone reductase activity (QOR)

Probab=100.00  E-value=6.3e-33  Score=264.55  Aligned_cols=298  Identities=32%  Similarity=0.520  Sum_probs=244.0

Q ss_pred             eeEEEEcccCCcceEEEeccccCCCCCCCeEEEEEeEEecChHhHHhhcCCCCCCCCCCCCcCCCceeEEEEEeCCCCCC
Q 016265           84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKE  163 (392)
Q Consensus        84 mka~v~~~~~~~~~l~~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~~~p~v~G~e~~G~V~~vG~~v~~  163 (392)
                      ||++++...+.+..+++. +.+.|.+.+++|+|++.++++|++|++...|.++. ...+|.++|||++|+|+++|+++.+
T Consensus         1 ~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~v~i~v~~~~i~~~d~~~~~g~~~~-~~~~~~~~g~e~~G~v~~~g~~~~~   78 (325)
T cd08253           1 MRAIRYHEFGAPDVLRLG-DLPVPTPGPGEVLVRVHASGVNPVDTYIRAGAYPG-LPPLPYVPGSDGAGVVEAVGEGVDG   78 (325)
T ss_pred             CceEEEcccCCcccceee-ecCCCCCCCCEEEEEEEEEecChhHhhhccCCCCC-CCCCCeecccceEEEEEeeCCCCCC
Confidence            689999877665667888 88999999999999999999999999988876542 2346789999999999999999999


Q ss_pred             CCCCCEEEecccccccCCCCCCCcceeEEEecCCceeeCCCCCCHHhHhccchhHHHHHHHHHh-cCCCCCCeEEEEcCC
Q 016265          164 FKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLER-TGFSAGKSILVLNGS  242 (392)
Q Consensus       164 ~~vGdrV~~~~~~~~~~~~~~~G~~a~~~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~al~~-~~~~~g~~VlI~Ga~  242 (392)
                      |++||+|++.....    ....|++++|+.++...++++|+++++++++.+++++.+||+++.. .++.+|++|+|+|++
T Consensus        79 ~~~Gd~v~~~~~~~----~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~g~~vlI~g~~  154 (325)
T cd08253          79 LKVGDRVWLTNLGW----GRRQGTAAEYVVVPADQLVPLPDGVSFEQGAALGIPALTAYRALFHRAGAKAGETVLVHGGS  154 (325)
T ss_pred             CCCCCEEEEecccc----CCCCcceeeEEEecHHHcEeCCCCCCHHHHhhhhhHHHHHHHHHHHHhCCCCCCEEEEEcCC
Confidence            99999999875311    0125899999999999999999999999999999999999999864 889999999999999


Q ss_pred             CcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCCcccc------CCCCccEEEecCcc--HHHHHHhc
Q 016265          243 GGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFED------LPEKFDVVYDAIGQ--CDRAVKAI  314 (392)
Q Consensus       243 G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~~------~~~~~D~vid~~G~--~~~~~~~l  314 (392)
                      |++|++++++++. .|++++++++++++.+.++++|++++++....++.+      ..+++|+++||+|.  .+..++++
T Consensus       155 ~~~g~~~~~~a~~-~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~~~~~~~~~l  233 (325)
T cd08253         155 GAVGHAAVQLARW-AGARVIATASSAEGAELVRQAGADAVFNYRAEDLADRILAATAGQGVDVIIEVLANVNLAKDLDVL  233 (325)
T ss_pred             chHHHHHHHHHHH-cCCEEEEEeCCHHHHHHHHHcCCCEEEeCCCcCHHHHHHHHcCCCceEEEEECCchHHHHHHHHhh
Confidence            9999999999999 599999999989999999999999998876644321      13579999999884  57788999


Q ss_pred             ccCCeEEEEcCCCCC----------CceEEEE----ee----cHHHHHHHHHHHHCCCcccccCCCcccchhhHHHHHHH
Q 016265          315 KEGGTVVALTGAVTP----------PGFRFVV----TS----NGEVLKKLNPYLESGKVKPIIDPKGPFPFSQVVEAFSY  376 (392)
Q Consensus       315 ~~~G~iv~~g~~~~~----------~~~~~~~----~~----~~~~~~~~~~~l~~g~l~~~~~~t~~~~l~~~~~A~~~  376 (392)
                      +++|+++.++.....          ....+..    ..    ..+.++.+.+++..+.+++.  .++.|++++++++++.
T Consensus       234 ~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~--~~~~~~~~~~~~~~~~  311 (325)
T cd08253         234 APGGRIVVYGSGGLRGTIPINPLMAKEASIRGVLLYTATPEERAAAAEAIAAGLADGALRPV--IAREYPLEEAAAAHEA  311 (325)
T ss_pred             CCCCEEEEEeecCCcCCCChhHHHhcCceEEeeehhhcCHHHHHHHHHHHHHHHHCCCccCc--cccEEcHHHHHHHHHH
Confidence            999999998763210          1111111    11    12345667778888888764  4678999999999999


Q ss_pred             HHhCCCCeeEEEEe
Q 016265          377 IETNKATGKVVIHP  390 (392)
Q Consensus       377 l~~~~~~gKvvl~~  390 (392)
                      +.++...||+++.+
T Consensus       312 ~~~~~~~~kvv~~~  325 (325)
T cd08253         312 VESGGAIGKVVLDP  325 (325)
T ss_pred             HHcCCCcceEEEeC
Confidence            99988889999864

Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts

>cd05286 QOR2 Quinone oxidoreductase (QOR)

Probab=100.00  E-value=1.1e-32  Score=262.15  Aligned_cols=290  Identities=32%  Similarity=0.457  Sum_probs=239.3

Q ss_pred             eEEEEcccCCcceEEEeccccCCCCCCCeEEEEEeEEecChHhHHhhcCCCCCCCCCCCCcCCCceeEEEEEeCCCCCCC
Q 016265           85 KAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKEF  164 (392)
Q Consensus        85 ka~v~~~~~~~~~l~~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~~~p~v~G~e~~G~V~~vG~~v~~~  164 (392)
                      ||+.+...+....+.+. +.+.+.+.++||+|++.++++|+.|++...|.++.   .+|.++|||++|+|+.+|+++.++
T Consensus         1 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~i~v~~~~i~~~d~~~~~~~~~~---~~~~~~g~e~~G~v~~~g~~~~~~   76 (320)
T cd05286           1 KAVRIHKTGGPEVLEYE-DVPVPEPGPGEVLVRNTAIGVNFIDTYFRSGLYPL---PLPFVLGVEGAGVVEAVGPGVTGF   76 (320)
T ss_pred             CeEEEecCCCccceEEe-ecCCCCCCCCEEEEEEEEeecCHHHHHHhcCCCCC---CCCccCCcceeEEEEEECCCCCCC
Confidence            46777666666567777 67777889999999999999999999998886542   457789999999999999999999


Q ss_pred             CCCCEEEecccccccCCCCCCCcceeEEEecCCceeeCCCCCCHHhHhccchhHHHHHHHHH-hcCCCCCCeEEEEcCCC
Q 016265          165 KEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLE-RTGFSAGKSILVLNGSG  243 (392)
Q Consensus       165 ~vGdrV~~~~~~~~~~~~~~~G~~a~~~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~al~-~~~~~~g~~VlI~Ga~G  243 (392)
                      ++||+|++..         ..|+|++|+.++.+.++++|+++++.+++.+++...++|+++. ..++.+|++|+|+|++|
T Consensus        77 ~~G~~V~~~~---------~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~g~~vlI~g~~g  147 (320)
T cd05286          77 KVGDRVAYAG---------PPGAYAEYRVVPASRLVKLPDGISDETAAALLLQGLTAHYLLRETYPVKPGDTVLVHAAAG  147 (320)
T ss_pred             CCCCEEEEec---------CCCceeEEEEecHHHceeCCCCCCHHHHhhccchHHHHHHHHHHhcCCCCCCEEEEEcCCc
Confidence            9999999863         1489999999999999999999999999999999999999984 57899999999999999


Q ss_pred             cHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCCcccc----C--CCCccEEEecCc--cHHHHHHhcc
Q 016265          244 GVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFED----L--PEKFDVVYDAIG--QCDRAVKAIK  315 (392)
Q Consensus       244 ~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~~----~--~~~~D~vid~~G--~~~~~~~~l~  315 (392)
                      ++|++++++|+.+ |+++++++.++++.+.++++|++++++..+..+.+    .  .+++|++|||+|  ..+.++++++
T Consensus       148 ~~g~~~~~~a~~~-g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~~~~~~~~~~~~~~l~  226 (320)
T cd05286         148 GVGLLLTQWAKAL-GATVIGTVSSEEKAELARAAGADHVINYRDEDFVERVREITGGRGVDVVYDGVGKDTFEGSLDSLR  226 (320)
T ss_pred             hHHHHHHHHHHHc-CCEEEEEcCCHHHHHHHHHCCCCEEEeCCchhHHHHHHHHcCCCCeeEEEECCCcHhHHHHHHhhc
Confidence            9999999999995 99999999999999999999999998876544322    1  347999999987  3578899999


Q ss_pred             cCCeEEEEcCCCCC-----------CceEEEE------eec----HHHHHHHHHHHHCCCcccccCCCcccchhhHHHHH
Q 016265          316 EGGTVVALTGAVTP-----------PGFRFVV------TSN----GEVLKKLNPYLESGKVKPIIDPKGPFPFSQVVEAF  374 (392)
Q Consensus       316 ~~G~iv~~g~~~~~-----------~~~~~~~------~~~----~~~~~~~~~~l~~g~l~~~~~~t~~~~l~~~~~A~  374 (392)
                      ++|+++.+|.....           ..+.+..      ...    ...+.++++++.++.+.+.  .++.|+++++.+||
T Consensus       227 ~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~a~  304 (320)
T cd05286         227 PRGTLVSFGNASGPVPPFDLLRLSKGSLFLTRPSLFHYIATREELLARAAELFDAVASGKLKVE--IGKRYPLADAAQAH  304 (320)
T ss_pred             cCcEEEEEecCCCCCCccCHHHHHhcCcEEEEEehhhhcCCHHHHHHHHHHHHHHHHCCCCcCc--ccceEcHHHHHHHH
Confidence            99999999754311           1112210      011    2345678889999988765  56789999999999


Q ss_pred             HHHHhCCCCeeEEEEe
Q 016265          375 SYIETNKATGKVVIHP  390 (392)
Q Consensus       375 ~~l~~~~~~gKvvl~~  390 (392)
                      +.+.++...+|++++|
T Consensus       305 ~~~~~~~~~~~vv~~~  320 (320)
T cd05286         305 RDLESRKTTGKLLLIP  320 (320)
T ss_pred             HHHHcCCCCceEEEeC
Confidence            9999988889999875

Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone

>PLN02702 L-idonate 5-dehydrogenase

Probab=100.00  E-value=1e-32  Score=269.24  Aligned_cols=298  Identities=23%  Similarity=0.301  Sum_probs=225.2

Q ss_pred             eeEEEEcccCCcceEEEeccccCCCCCCCeEEEEEeEEecChHhHHhhcCCCCC-CCCCCCCcCCCceeEEEEEeCCCCC
Q 016265           84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKA-TDSPLPTVPGYDVAGVVVKVGTQVK  162 (392)
Q Consensus        84 mka~v~~~~~~~~~l~~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~-~~~~~p~v~G~e~~G~V~~vG~~v~  162 (392)
                      |++|+. .+..   ++++ +.+.|.++++||+||+.++++|++|++.+.|.... ....+|.++|||++|+|+++|++++
T Consensus        19 ~~~~~~-~~~~---l~~~-~~~~p~~~~~ev~Ikv~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~   93 (364)
T PLN02702         19 MAAWLV-GVNT---LKIQ-PFKLPPLGPHDVRVRMKAVGICGSDVHYLKTMRCADFVVKEPMVIGHECAGIIEEVGSEVK   93 (364)
T ss_pred             ceEEEe-cCCc---eEEE-eccCCCCCCCeEEEEEEEEEEchhhhHHHcCCCCccccCCCCcccccceeEEEEEECCCCC
Confidence            455554 3333   7777 78888899999999999999999999988763211 1123577899999999999999999


Q ss_pred             CCCCCCEEEeccccc------c-------------cCCCCCCCcceeEEEecCCceeeCCCCCCHHhHhccchhHHHHHH
Q 016265          163 EFKEGDEVYGDINEK------A-------------LEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYE  223 (392)
Q Consensus       163 ~~~vGdrV~~~~~~~------~-------------~~~~~~~G~~a~~~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~  223 (392)
                      +|++||+|++.....      +             +......|+|++|+.++...++++|+++++++++.. ..+.++|+
T Consensus        94 ~~~~Gd~V~~~~~~~~~~c~~c~~g~~~~c~~~~~~~~~~~~g~~~~y~~v~~~~~~~~P~~l~~~~aa~~-~~~~~a~~  172 (364)
T PLN02702         94 HLVVGDRVALEPGISCWRCNLCKEGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPENVSLEEGAMC-EPLSVGVH  172 (364)
T ss_pred             CCCCCCEEEEcCCCCCCCCcchhCcCcccCCCccccCCCCCCCcccceEEcchHHeEECCCCCCHHHHhhh-hHHHHHHH
Confidence            999999998732110      0             000112689999999999999999999999988752 23344888


Q ss_pred             HHHhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCe-EEEEeCCcccHHHHHhcCCcEEEeCCC--Ccccc--------
Q 016265          224 GLERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGAS-RVAATSSTRNLEFLKSLGADLAIDYTK--DNFED--------  292 (392)
Q Consensus       224 al~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~-vv~~~~~~~~~~~~~~~G~~~vi~~~~--~~~~~--------  292 (392)
                      ++...++.+|++|+|+| +|++|++++|+|+.+ |++ +++++.+++|.++++++|++.++++..  .++.+        
T Consensus       173 ~~~~~~~~~g~~vlI~g-~g~vG~~~~~~a~~~-G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  250 (364)
T PLN02702        173 ACRRANIGPETNVLVMG-AGPIGLVTMLAARAF-GAPRIVIVDVDDERLSVAKQLGADEIVLVSTNIEDVESEVEEIQKA  250 (364)
T ss_pred             HHHhcCCCCCCEEEEEC-CCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHHHhCCCEEEecCcccccHHHHHHHHhhh
Confidence            88778899999999996 899999999999994 986 455566888899999999998877532  22211        


Q ss_pred             CCCCccEEEecCc---cHHHHHHhcccCCeEEEEcCCCCCC----------ceEEE-EeecHHHHHHHHHHHHCCCcccc
Q 016265          293 LPEKFDVVYDAIG---QCDRAVKAIKEGGTVVALTGAVTPP----------GFRFV-VTSNGEVLKKLNPYLESGKVKPI  358 (392)
Q Consensus       293 ~~~~~D~vid~~G---~~~~~~~~l~~~G~iv~~g~~~~~~----------~~~~~-~~~~~~~~~~~~~~l~~g~l~~~  358 (392)
                      ..+++|++|||+|   .+..++++++++|+++.+|......          .+... .......+++++++++++++.+.
T Consensus       251 ~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~  330 (364)
T PLN02702        251 MGGGIDVSFDCVGFNKTMSTALEATRAGGKVCLVGMGHNEMTVPLTPAAAREVDVVGVFRYRNTWPLCLEFLRSGKIDVK  330 (364)
T ss_pred             cCCCCCEEEECCCCHHHHHHHHHHHhcCCEEEEEccCCCCCcccHHHHHhCccEEEEeccChHHHHHHHHHHHcCCCCch
Confidence            1347999999998   3689999999999999998532111          11111 11123567889999999998643


Q ss_pred             cCCCcccc--hhhHHHHHHHHHhCCCCeeEEEE
Q 016265          359 IDPKGPFP--FSQVVEAFSYIETNKATGKVVIH  389 (392)
Q Consensus       359 ~~~t~~~~--l~~~~~A~~~l~~~~~~gKvvl~  389 (392)
                      ..+++.|+  ++++++||+.+.+++..+|+++.
T Consensus       331 ~~~~~~~~l~~~~~~~a~~~~~~~~~~~kvv~~  363 (364)
T PLN02702        331 PLITHRFGFSQKEVEEAFETSARGGNAIKVMFN  363 (364)
T ss_pred             HheEEEeccChHHHHHHHHHHhcCCCceEEEEe
Confidence            33456755  48999999999988888999985

>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family

Probab=100.00  E-value=5.6e-33  Score=272.99  Aligned_cols=300  Identities=27%  Similarity=0.348  Sum_probs=230.2

Q ss_pred             CCcceeEEEEcccCCcceEEEeccccCCCCCCCeEEEEEeEEecChHhHHhhcCCCC-----CCCCCCCCcCCCceeEEE
Q 016265           80 VPSEMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFK-----ATDSPLPTVPGYDVAGVV  154 (392)
Q Consensus        80 ~p~~mka~v~~~~~~~~~l~~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~g~~~-----~~~~~~p~v~G~e~~G~V  154 (392)
                      +-+.+.+.++... .   ++++ +.+.|+++++||+||+.++++|++|++.+.+...     .....+|.++|||++|+|
T Consensus        25 ~~~~~~~~~~~~~-~---~~~~-~~~~p~~~~~ev~V~v~a~gi~~~D~~~~~~~~~~~~~~~~~~~~~~~~g~e~~G~V   99 (384)
T cd08265          25 KLTNLGSKVWRYP-E---LRVE-DVPVPNLKPDEILIRVKACGICGSDIHLYETDKDGYILYPGLTEFPVVIGHEFSGVV   99 (384)
T ss_pred             hhccceeEEEeCC-C---EEEE-ECCCCCCCCCEEEEEEEEEEEcHhHHHHHcCCCCcccccCcccCCCcccccceEEEE
Confidence            3455666666642 2   7888 8999999999999999999999999998764210     011346789999999999


Q ss_pred             EEeCCCCCCCCCCCEEEecccccc------c------------CCCCCCCcceeEEEecCCceeeCCCC-------CCHH
Q 016265          155 VKVGTQVKEFKEGDEVYGDINEKA------L------------EGPKQFGSLAEYTAVEERLLAPKPKN-------LDFV  209 (392)
Q Consensus       155 ~~vG~~v~~~~vGdrV~~~~~~~~------~------------~~~~~~G~~a~~~~v~~~~~~~iP~~-------l~~~  209 (392)
                      +++|+++..|++||+|++.....+      .            .|...+|+|++|+.++...++++|++       ++++
T Consensus       100 ~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~~~~~~~~g~~~~g~~~~~v~v~~~~~~~lP~~~~~~~~~~~~~  179 (384)
T cd08265         100 EKTGKNVKNFEKGDPVTAEEMMWCGMCRACRSGSPNHCKNLKELGFSADGAFAEYIAVNARYAWEINELREIYSEDKAFE  179 (384)
T ss_pred             EEECCCCCCCCCCCEEEECCCCCCCCChhhhCcCcccCCCcceeeecCCCcceeeEEechHHeEECCccccccccCCCHH
Confidence            999999999999999986322111      0            01223699999999999999999986       3455


Q ss_pred             hHhccchhHHHHHHHHH-h-cCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCC-eEEEEeCCcccHHHHHhcCCcEEEeCC
Q 016265          210 QAAGLPLAIETAYEGLE-R-TGFSAGKSILVLNGSGGVGSLVIQLAKQVFGA-SRVAATSSTRNLEFLKSLGADLAIDYT  286 (392)
Q Consensus       210 ~aa~l~~~~~ta~~al~-~-~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~-~vv~~~~~~~~~~~~~~~G~~~vi~~~  286 (392)
                       ++.++.++.+||+++. . .++++|++|+|+| +|++|++++|+|+.+ |+ ++++++.+++|.++++++|++++++++
T Consensus       180 -~a~~~~~~~ta~~al~~~~~~~~~g~~VlV~g-~g~vG~~ai~lA~~~-G~~~vi~~~~~~~~~~~~~~~g~~~~v~~~  256 (384)
T cd08265         180 -AGALVEPTSVAYNGLFIRGGGFRPGAYVVVYG-AGPIGLAAIALAKAA-GASKVIAFEISEERRNLAKEMGADYVFNPT  256 (384)
T ss_pred             -HhhhhhHHHHHHHHHHhhcCCCCCCCEEEEEC-CCHHHHHHHHHHHHc-CCCEEEEEcCCHHHHHHHHHcCCCEEEccc
Confidence             5566778889999984 3 6899999999995 899999999999994 98 677888888899999999999999876


Q ss_pred             CC---cccc----C--CCCccEEEecCcc----HHHHHHhcccCCeEEEEcCCCCCCce---------EEEEe----ecH
Q 016265          287 KD---NFED----L--PEKFDVVYDAIGQ----CDRAVKAIKEGGTVVALTGAVTPPGF---------RFVVT----SNG  340 (392)
Q Consensus       287 ~~---~~~~----~--~~~~D~vid~~G~----~~~~~~~l~~~G~iv~~g~~~~~~~~---------~~~~~----~~~  340 (392)
                      +.   ++.+    .  .+++|+++|++|.    +..++++++++|+++.+|.......+         ..+..    ...
T Consensus       257 ~~~~~~~~~~v~~~~~g~gvDvvld~~g~~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  336 (384)
T cd08265         257 KMRDCLSGEKVMEVTKGWGADIQVEAAGAPPATIPQMEKSIAINGKIVYIGRAATTVPLHLEVLQVRRAQIVGAQGHSGH  336 (384)
T ss_pred             ccccccHHHHHHHhcCCCCCCEEEECCCCcHHHHHHHHHHHHcCCEEEEECCCCCCCcccHHHHhhCceEEEEeeccCCc
Confidence            43   2211    1  3579999999983    47889999999999999754311110         01111    123


Q ss_pred             HHHHHHHHHHHCCCcccccCCCcccchhhHHHHHHHHHhCCCCeeEEE
Q 016265          341 EVLKKLNPYLESGKVKPIIDPKGPFPFSQVVEAFSYIETNKATGKVVI  388 (392)
Q Consensus       341 ~~~~~~~~~l~~g~l~~~~~~t~~~~l~~~~~A~~~l~~~~~~gKvvl  388 (392)
                      ..+.++++++++|.+++...+++.|+++++++||+.+.++ ..||+|+
T Consensus       337 ~~~~~~~~ll~~g~l~~~~~~~~~~~~~~~~~a~~~~~~~-~~~kvvv  383 (384)
T cd08265         337 GIFPSVIKLMASGKIDMTKIITARFPLEGIMEAIKAASER-TDGKITI  383 (384)
T ss_pred             chHHHHHHHHHcCCCChHHheEEEeeHHHHHHHHHHHhcC-CCceEEe
Confidence            4688999999999998754456889999999999997665 5688875

This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi

>cd08247 AST1_like AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast

Probab=100.00  E-value=1.3e-32  Score=267.29  Aligned_cols=297  Identities=34%  Similarity=0.510  Sum_probs=230.3

Q ss_pred             eEEEEcccCCcceEEEeccccCCC-CCCCeEEEEEeEEecChHhHHhhcCCCCCCCCCCCCcCCCceeEEEEEeCCCCC-
Q 016265           85 KAWLYGEYGGVDVLKFDEKVTVPQ-VKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVK-  162 (392)
Q Consensus        85 ka~v~~~~~~~~~l~~~~~~~~p~-~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~~~p~v~G~e~~G~V~~vG~~v~-  162 (392)
                      |++++.+++.+..++.. +.+.|. ++++||+||+.++++|++|+..+.+... .....|.++|||++|+|+++|++++ 
T Consensus         2 ~~~~~~~~~~~~~~~~~-~~~~p~~~~~~~v~I~v~~~~~~~~d~~~~~~~~~-~~~~~~~~~g~e~~G~V~~vG~~v~~   79 (352)
T cd08247           2 KALTFKNNTSPLTITTI-KLPLPNCYKDNEIVVKVHAAALNPVDLKLYNSYTF-HFKVKEKGLGRDYSGVIVKVGSNVAS   79 (352)
T ss_pred             ceEEEecCCCcceeecc-CCCCCCCCCCCeEEEEEEEEecChHhHHHhccccc-ccccCCCccCceeEEEEEEeCccccc
Confidence            68999888877545544 444443 3999999999999999999988754321 1112367899999999999999998 


Q ss_pred             CCCCCCEEEecccccccCCCCCCCcceeEEEecCC----ceeeCCCCCCHHhHhccchhHHHHHHHHHhc--CCCCCCeE
Q 016265          163 EFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEER----LLAPKPKNLDFVQAAGLPLAIETAYEGLERT--GFSAGKSI  236 (392)
Q Consensus       163 ~~~vGdrV~~~~~~~~~~~~~~~G~~a~~~~v~~~----~~~~iP~~l~~~~aa~l~~~~~ta~~al~~~--~~~~g~~V  236 (392)
                      .|++||+|++.....+    ...|+|++|++++..    .++++|+++++++++.+++++.|||+++...  .+++|++|
T Consensus        80 ~~~~Gd~V~~~~~~~~----~~~g~~~~~~~v~~~~~~~~~~~lP~~l~~~~aa~~~~~~~ta~~~l~~~~~~~~~g~~v  155 (352)
T cd08247          80 EWKVGDEVCGIYPHPY----GGQGTLSQYLLVDPKKDKKSITRKPENISLEEAAAWPLVLGTAYQILEDLGQKLGPDSKV  155 (352)
T ss_pred             CCCCCCEEEEeecCCC----CCCceeeEEEEEccccccceeEECCCCCCHHHHHHhHHHHHHHHHHHHHhhhccCCCCeE
Confidence            8999999998653221    136899999999987    7899999999999999999999999999765  69999999


Q ss_pred             EEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCCc---c-cc----C--CCCccEEEecCcc
Q 016265          237 LVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDN---F-ED----L--PEKFDVVYDAIGQ  306 (392)
Q Consensus       237 lI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~---~-~~----~--~~~~D~vid~~G~  306 (392)
                      +|+|++|++|++++|+|+.++|.++++++.++++.+.++++|+++++++++.+   + .+    .  .+++|++|||+|.
T Consensus       156 lI~ga~~~vg~~~~~~a~~~~~~~~v~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~d~vl~~~g~  235 (352)
T cd08247         156 LVLGGSTSVGRFAIQLAKNHYNIGTVVGTCSSRSAELNKKLGADHFIDYDAHSGVKLLKPVLENVKGQGKFDLILDCVGG  235 (352)
T ss_pred             EEECCCchHHHHHHHHHHhcCCcceEEEEeChhHHHHHHHhCCCEEEecCCCcccchHHHHHHhhcCCCCceEEEECCCC
Confidence            99999899999999999984344344444556666788999999999876544   2 11    1  4589999999884


Q ss_pred             ---HHHHHHhcc---cCCeEEEEcCCC----CC-------------Cce---------EEE---EeecHHHHHHHHHHHH
Q 016265          307 ---CDRAVKAIK---EGGTVVALTGAV----TP-------------PGF---------RFV---VTSNGEVLKKLNPYLE  351 (392)
Q Consensus       307 ---~~~~~~~l~---~~G~iv~~g~~~----~~-------------~~~---------~~~---~~~~~~~~~~~~~~l~  351 (392)
                         ...++++++   ++|+++.+++..    ..             ..+         .+.   .......+.++++++.
T Consensus       236 ~~~~~~~~~~l~~~~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (352)
T cd08247         236 YDLFPHINSILKPKSKNGHYVTIVGDYKANYKKDTFNSWDNPSANARKLFGSLGLWSYNYQFFLLDPNADWIEKCAELIA  315 (352)
T ss_pred             HHHHHHHHHHhCccCCCCEEEEEeCCCcccccchhhhhccccchhhhhhhhhhcCCCcceEEEEecCCHHHHHHHHHHHh
Confidence               468899999   999999875321    00             000         000   0111356788999999


Q ss_pred             CCCcccccCCCcccchhhHHHHHHHHHhCCCCeeEEEE
Q 016265          352 SGKVKPIIDPKGPFPFSQVVEAFSYIETNKATGKVVIH  389 (392)
Q Consensus       352 ~g~l~~~~~~t~~~~l~~~~~A~~~l~~~~~~gKvvl~  389 (392)
                      ++.+++.  +++.|+++++++||+.+++++..||++++
T Consensus       316 ~~~l~~~--~~~~~~l~~~~~a~~~~~~~~~~gkvvi~  351 (352)
T cd08247         316 DGKVKPP--IDSVYPFEDYKEAFERLKSNRAKGKVVIK  351 (352)
T ss_pred             CCCeEee--eccEecHHHHHHHHHHHHcCCCCCcEEEe
Confidence            9998765  46789999999999999999888999985

This group contains members identified in targeting of yeast membrane proteins ATPase. AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast, identified as a multicopy suppressor of pma1 mutants which cause temperature sensitive growth arrest due to the inability of ATPase to target to the cell surface. This family is homologous to the medium chain family of dehydrogenases and reductases. Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-termi

>cd05276 p53_inducible_oxidoreductase PIG3 p53-inducible quinone oxidoreductase

Probab=100.00  E-value=1.1e-32  Score=262.56  Aligned_cols=291  Identities=35%  Similarity=0.547  Sum_probs=239.9

Q ss_pred             eeEEEEcccCCcceEEEeccccCCCCCCCeEEEEEeEEecChHhHHhhcCCCCCCCCCCCCcCCCceeEEEEEeCCCCCC
Q 016265           84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKE  163 (392)
Q Consensus        84 mka~v~~~~~~~~~l~~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~~~p~v~G~e~~G~V~~vG~~v~~  163 (392)
                      ||++++.+.+....+++. +.+.|.+.++||+||+.++++|+.|++.+.|.++. ...+|.++|||++|+|+++|+++..
T Consensus         1 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~-~~~~~~~~g~e~~G~v~~vg~~~~~   78 (323)
T cd05276           1 MKAIVIKEPGGPEVLELG-EVPKPAPGPGEVLIRVAAAGVNRADLLQRQGLYPP-PPGASDILGLEVAGVVVAVGPGVTG   78 (323)
T ss_pred             CeEEEEecCCCcccceEE-ecCCCCCCCCEEEEEEEEeecCHHHHHHhCCCCCC-CCCCCCcccceeEEEEEeeCCCCCC
Confidence            799999987776667887 77878889999999999999999999988876542 3346789999999999999999999


Q ss_pred             CCCCCEEEecccccccCCCCCCCcceeEEEecCCceeeCCCCCCHHhHhccchhHHHHHHHHH-hcCCCCCCeEEEEcCC
Q 016265          164 FKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLE-RTGFSAGKSILVLNGS  242 (392)
Q Consensus       164 ~~vGdrV~~~~~~~~~~~~~~~G~~a~~~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~al~-~~~~~~g~~VlI~Ga~  242 (392)
                      +++||+|++...         +|+|++|+.++...++++|+++++.+++.++.++.++|+++. ...+.+|++|+|+|+.
T Consensus        79 ~~~Gd~V~~~~~---------~g~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~a~~~~~~~~~~~~~~~vlv~g~~  149 (323)
T cd05276          79 WKVGDRVCALLA---------GGGYAEYVVVPAGQLLPVPEGLSLVEAAALPEVFFTAWQNLFQLGGLKAGETVLIHGGA  149 (323)
T ss_pred             CCCCCEEEEecC---------CCceeEEEEcCHHHhccCCCCCCHHHHhhchhHHHHHHHHHHHhcCCCCCCEEEEEcCc
Confidence            999999998632         489999999999999999999999999999999999999985 4678999999999999


Q ss_pred             CcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCCcccc----C--CCCccEEEecCcc--HHHHHHhc
Q 016265          243 GGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFED----L--PEKFDVVYDAIGQ--CDRAVKAI  314 (392)
Q Consensus       243 G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~~----~--~~~~D~vid~~G~--~~~~~~~l  314 (392)
                      |++|++++++++. .|++++++++++++++.++++|++.+++.....+.+    .  .+++|++||++|.  ...+++++
T Consensus       150 ~~ig~~~~~~~~~-~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~  228 (323)
T cd05276         150 SGVGTAAIQLAKA-LGARVIATAGSEEKLEACRALGADVAINYRTEDFAEEVKEATGGRGVDVILDMVGGDYLARNLRAL  228 (323)
T ss_pred             ChHHHHHHHHHHH-cCCEEEEEcCCHHHHHHHHHcCCCEEEeCCchhHHHHHHHHhCCCCeEEEEECCchHHHHHHHHhh
Confidence            9999999999999 599998888888899999999998888876544322    1  3579999999983  57889999


Q ss_pred             ccCCeEEEEcCCCC---C--------CceEEEE---ee---------cHHHHHHHHHHHHCCCcccccCCCcccchhhHH
Q 016265          315 KEGGTVVALTGAVT---P--------PGFRFVV---TS---------NGEVLKKLNPYLESGKVKPIIDPKGPFPFSQVV  371 (392)
Q Consensus       315 ~~~G~iv~~g~~~~---~--------~~~~~~~---~~---------~~~~~~~~~~~l~~g~l~~~~~~t~~~~l~~~~  371 (392)
                      +++|+++.++....   .        ....+..   ..         ....+.++++++.++++++.  .++.|++++++
T Consensus       229 ~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~  306 (323)
T cd05276         229 APDGRLVLIGLLGGAKAELDLAPLLRKRLTLTGSTLRSRSLEEKAALAAAFREHVWPLFASGRIRPV--IDKVFPLEEAA  306 (323)
T ss_pred             ccCCEEEEEecCCCCCCCCchHHHHHhCCeEEEeeccchhhhccHHHHHHHHHHHHHHHHCCCccCC--cceEEcHHHHH
Confidence            99999999875321   0        1111110   00         11345677888989988754  56789999999


Q ss_pred             HHHHHHHhCCCCeeEEE
Q 016265          372 EAFSYIETNKATGKVVI  388 (392)
Q Consensus       372 ~A~~~l~~~~~~gKvvl  388 (392)
                      +|++.+.++...||+++
T Consensus       307 ~a~~~~~~~~~~~kvv~  323 (323)
T cd05276         307 EAHRRMESNEHIGKIVL  323 (323)
T ss_pred             HHHHHHHhCCCcceEeC
Confidence            99999998888888874

PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding

>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins

Probab=100.00  E-value=9.5e-33  Score=265.58  Aligned_cols=294  Identities=30%  Similarity=0.421  Sum_probs=238.4

Q ss_pred             eEEEEcccCCcceEEEeccccCCCCCCCeEEEEEeEEecChHhHHhhcCCCCCCCCCCCCcCCCceeEEEEEeCCCCCCC
Q 016265           85 KAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKEF  164 (392)
Q Consensus        85 ka~v~~~~~~~~~l~~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~~~p~v~G~e~~G~V~~vG~~v~~~  164 (392)
                      ||++++++|..  ++++ +.+.|.+.+++|+|++.++++|++|++.+.|.++  ...+|.++|||++|+|+++|++++++
T Consensus         1 ~~~~~~~~~~~--~~~~-~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~--~~~~p~~~g~e~~G~v~~~g~~~~~~   75 (330)
T cd08245           1 KAAVVHAAGGP--LEPE-EVPVPEPGPGEVLIKIEACGVCHTDLHAAEGDWG--GSKYPLVPGHEIVGEVVEVGAGVEGR   75 (330)
T ss_pred             CeEEEecCCCC--ceEE-eccCCCCCCCeEEEEEEEEeccHHHHHHHcCCCC--CCCCCcccCccceEEEEEECCCCccc
Confidence            67888887543  7888 8899999999999999999999999999988763  23467899999999999999999999


Q ss_pred             CCCCEEEecc-----ccc--c------------cCCCCCCCcceeEEEecCCceeeCCCCCCHHhHhccchhHHHHHHHH
Q 016265          165 KEGDEVYGDI-----NEK--A------------LEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGL  225 (392)
Q Consensus       165 ~vGdrV~~~~-----~~~--~------------~~~~~~~G~~a~~~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~al  225 (392)
                      ++||+|+...     +.+  .            ..+....|+|++|+.++.+.++++|+++++++++.+++.+.|||+++
T Consensus        76 ~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~~~~l~~~~~ta~~~l  155 (330)
T cd08245          76 KVGDRVGVGWLVGSCGRCEYCRRGLENLCQKAVNTGYTTQGGYAEYMVADAEYTVLLPDGLPLAQAAPLLCAGITVYSAL  155 (330)
T ss_pred             ccCCEEEEccccCCCCCChhhhCcCcccCcCccccCcccCCccccEEEEcHHHeEECCCCCCHHHhhhhhhhHHHHHHHH
Confidence            9999998421     100  0            00112368999999999999999999999999999999999999999


Q ss_pred             HhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCCccc-cCCCCccEEEecC
Q 016265          226 ERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFE-DLPEKFDVVYDAI  304 (392)
Q Consensus       226 ~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~-~~~~~~D~vid~~  304 (392)
                      +..++++|++|+|+| +|++|++++++|+. .|.+++++++++++.+.++++|++.+++....... ...+++|++||++
T Consensus       156 ~~~~~~~~~~vlI~g-~g~iG~~~~~~a~~-~G~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~vi~~~  233 (330)
T cd08245         156 RDAGPRPGERVAVLG-IGGLGHLAVQYARA-MGFETVAITRSPDKRELARKLGADEVVDSGAELDEQAAAGGADVILVTV  233 (330)
T ss_pred             HhhCCCCCCEEEEEC-CCHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHhCCcEEeccCCcchHHhccCCCCEEEECC
Confidence            878899999999996 78899999999999 59999999999999999999999988886554322 1235799999997


Q ss_pred             c---cHHHHHHhcccCCeEEEEcCCCCCC-c---eEE---------EEeecHHHHHHHHHHHHCCCcccccCCCcccchh
Q 016265          305 G---QCDRAVKAIKEGGTVVALTGAVTPP-G---FRF---------VVTSNGEVLKKLNPYLESGKVKPIIDPKGPFPFS  368 (392)
Q Consensus       305 G---~~~~~~~~l~~~G~iv~~g~~~~~~-~---~~~---------~~~~~~~~~~~~~~~l~~g~l~~~~~~t~~~~l~  368 (392)
                      +   ....++++++++|+++.++...... .   ..+         ........++++++++.++.+++   ..+.|+++
T Consensus       234 ~~~~~~~~~~~~l~~~G~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~l~~---~~~~~~~~  310 (330)
T cd08245         234 VSGAAAEAALGGLRRGGRIVLVGLPESPPFSPDIFPLIMKRQSIAGSTHGGRADLQEALDFAAEGKVKP---MIETFPLD  310 (330)
T ss_pred             CcHHHHHHHHHhcccCCEEEEECCCCCCccccchHHHHhCCCEEEEeccCCHHHHHHHHHHHHcCCCcc---eEEEEcHH
Confidence            6   3578999999999999997542110 0   001         01113567888999999999875   34689999


Q ss_pred             hHHHHHHHHHhCCCCeeEEE
Q 016265          369 QVVEAFSYIETNKATGKVVI  388 (392)
Q Consensus       369 ~~~~A~~~l~~~~~~gKvvl  388 (392)
                      ++++||+.+.+++..||+|+
T Consensus       311 ~~~~a~~~~~~~~~~~~~v~  330 (330)
T cd08245         311 QANEAYERMEKGDVRFRFVL  330 (330)
T ss_pred             HHHHHHHHHHcCCCCcceeC
Confidence            99999999999988899875

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an

>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family

Probab=100.00  E-value=1.8e-32  Score=261.16  Aligned_cols=277  Identities=25%  Similarity=0.298  Sum_probs=223.6

Q ss_pred             eEEEeccccCCCCCCCeEEEEEeEEecChHhHHhh-cCCCCCCCCCCCCcCCCceeEEEEEeCCCCCCCCCCCEEEeccc
Q 016265           97 VLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRR-QGKFKATDSPLPTVPGYDVAGVVVKVGTQVKEFKEGDEVYGDIN  175 (392)
Q Consensus        97 ~l~~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~-~g~~~~~~~~~p~v~G~e~~G~V~~vG~~v~~~~vGdrV~~~~~  175 (392)
                      .++++ +.+.|++.++||+|++.++++|+.|++.+ .|..+.....+|.++|||++|+|+++|++++++++||+|++.. 
T Consensus         6 ~~~~~-~~~~~~l~~~ev~v~v~~~~i~~~d~~~~~~g~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~~~-   83 (312)
T cd08269           6 RFEVE-EHPRPTPGPGQVLVRVEGCGVCGSDLPAFNQGRPWFVYPAEPGGPGHEGWGRVVALGPGVRGLAVGDRVAGLS-   83 (312)
T ss_pred             eeEEE-ECCCCCCCCCeEEEEEEEeeecccchHHHccCCCCcccCCCCcccceeeEEEEEEECCCCcCCCCCCEEEEec-
Confidence            47888 89999999999999999999999999987 7754322223477899999999999999999999999999864 


Q ss_pred             ccccCCCCCCCcceeEEEecCCceeeCCCCCCHHhHhccchhHHHHHHHHHhcCCCCCCeEEEEcCCCcHHHHHHHHHHH
Q 016265          176 EKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLERTGFSAGKSILVLNGSGGVGSLVIQLAKQ  255 (392)
Q Consensus       176 ~~~~~~~~~~G~~a~~~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~al~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~  255 (392)
                               .|+|++|+.++++.++++|+++  ..++....++.++++++...++++|++|+|+| +|++|++++|+|+.
T Consensus        84 ---------~g~~~~~~~v~~~~~~~lP~~~--~~~~~~~~~~~~a~~~~~~~~~~~~~~vlI~g-~g~vg~~~~~la~~  151 (312)
T cd08269          84 ---------GGAFAEYDLADADHAVPLPSLL--DGQAFPGEPLGCALNVFRRGWIRAGKTVAVIG-AGFIGLLFLQLAAA  151 (312)
T ss_pred             ---------CCcceeeEEEchhheEECCCch--hhhHHhhhhHHHHHHHHHhcCCCCCCEEEEEC-CCHHHHHHHHHHHH
Confidence                     4899999999999999999998  22222236778899999888899999999996 79999999999999


Q ss_pred             hcCCe-EEEEeCCcccHHHHHhcCCcEEEeCCCCcccc----C--CCCccEEEecCc---cHHHHHHhcccCCeEEEEcC
Q 016265          256 VFGAS-RVAATSSTRNLEFLKSLGADLAIDYTKDNFED----L--PEKFDVVYDAIG---QCDRAVKAIKEGGTVVALTG  325 (392)
Q Consensus       256 ~~G~~-vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~~----~--~~~~D~vid~~G---~~~~~~~~l~~~G~iv~~g~  325 (392)
                      + |++ ++++.+++++.++++++|++++++.....+.+    .  ..++|++|||+|   ..+.++++++++|+++.+|.
T Consensus       152 ~-g~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~vd~vld~~g~~~~~~~~~~~l~~~g~~~~~g~  230 (312)
T cd08269         152 A-GARRVIAIDRRPARLALARELGATEVVTDDSEAIVERVRELTGGAGADVVIEAVGHQWPLDLAGELVAERGRLVIFGY  230 (312)
T ss_pred             c-CCcEEEEECCCHHHHHHHHHhCCceEecCCCcCHHHHHHHHcCCCCCCEEEECCCCHHHHHHHHHHhccCCEEEEEcc
Confidence            4 998 88888888899999999999988865544322    1  357999999987   35889999999999999975


Q ss_pred             CCC-CC----------ceEEE--E----eecHHHHHHHHHHHHCCCcccccCCCcccchhhHHHHHHHHHhCCC-CeeEE
Q 016265          326 AVT-PP----------GFRFV--V----TSNGEVLKKLNPYLESGKVKPIIDPKGPFPFSQVVEAFSYIETNKA-TGKVV  387 (392)
Q Consensus       326 ~~~-~~----------~~~~~--~----~~~~~~~~~~~~~l~~g~l~~~~~~t~~~~l~~~~~A~~~l~~~~~-~gKvv  387 (392)
                      ... +.          ...+.  .    ....+.+++++++++++.+++....++.|+++++++|++.+.+++. .+|++
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~  310 (312)
T cd08269         231 HQDGPRPVPFQTWNWKGIDLINAVERDPRIGLEGMREAVKLIADGRLDLGSLLTHEFPLEELGDAFEAARRRPDGFIKGV  310 (312)
T ss_pred             CCCCCcccCHHHHhhcCCEEEEecccCccchhhHHHHHHHHHHcCCCCchhheeeeecHHHHHHHHHHHHhCCCCceEEE
Confidence            431 11          11111  1    1123678899999999999875435678999999999999999865 58988


Q ss_pred             E
Q 016265          388 I  388 (392)
Q Consensus       388 l  388 (392)
                      +
T Consensus       311 ~  311 (312)
T cd08269         311 I  311 (312)
T ss_pred             e
Confidence            6

The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i

>TIGR00692 tdh L-threonine 3-dehydrogenase

Probab=100.00  E-value=1e-32  Score=266.66  Aligned_cols=293  Identities=25%  Similarity=0.318  Sum_probs=225.9

Q ss_pred             cccCCcceEEEeccccCCCCCCCeEEEEEeEEecChHhHHhhcCCCC-CCCCCCCCcCCCceeEEEEEeCCCCCCCCCCC
Q 016265           90 GEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFK-ATDSPLPTVPGYDVAGVVVKVGTQVKEFKEGD  168 (392)
Q Consensus        90 ~~~~~~~~l~~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~g~~~-~~~~~~p~v~G~e~~G~V~~vG~~v~~~~vGd  168 (392)
                      ++++..  ++++ +.+.|.|+++||+||+.++++|+.|+..+.+... .....+|.++|||++|+|+++|++++++++||
T Consensus         5 ~~~~~~--~~l~-~~~~p~~~~~ev~V~v~~~~~~~~d~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd   81 (340)
T TIGR00692         5 TKPGYG--AELT-EVPVPEPGPGEVLIKVLATSICGTDVHIYNWDEWAQSRIKPPQVVGHEVAGEVVGIGPGVEGIKVGD   81 (340)
T ss_pred             ccCCCC--cEEE-ECCCCCCCCCeEEEEEEEEEEcccCHHHHcCCCCCCCCCCCCcccccceEEEEEEECCCCCcCCCCC
Confidence            345544  7777 8899999999999999999999999988765421 11233567899999999999999999999999


Q ss_pred             EEEecccccc------------------cCCCCCCCcceeEEEecCCceeeCCCCCCHHhHhccchhHHHHHHHHHhcCC
Q 016265          169 EVYGDINEKA------------------LEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLERTGF  230 (392)
Q Consensus       169 rV~~~~~~~~------------------~~~~~~~G~~a~~~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~al~~~~~  230 (392)
                      +|++.....+                  ..+....|+|++|++++.+.++++|++++++++ +++.++.++++++ ....
T Consensus        82 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~a-~~~~~~~~a~~~~-~~~~  159 (340)
T TIGR00692        82 YVSVETHIVCGKCYACRRGQYHVCQNTKIFGVDTDGCFAEYAVVPAQNIWKNPKSIPPEYA-TIQEPLGNAVHTV-LAGP  159 (340)
T ss_pred             EEEECCcCCCCCChhhhCcChhhCcCcceEeecCCCcceeEEEeehHHcEECcCCCChHhh-hhcchHHHHHHHH-HccC
Confidence            9987421100                  001113689999999999999999999998654 5677788899887 3457


Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHHHHhcCCe-EEEEeCCcccHHHHHhcCCcEEEeCCCCcccc----C--CCCccEEEec
Q 016265          231 SAGKSILVLNGSGGVGSLVIQLAKQVFGAS-RVAATSSTRNLEFLKSLGADLAIDYTKDNFED----L--PEKFDVVYDA  303 (392)
Q Consensus       231 ~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~-vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~~----~--~~~~D~vid~  303 (392)
                      ++|++|+|.| +|++|.+++|+|+.+ |++ ++++..++++.+.++++|++.++++...++.+    .  .+++|++|||
T Consensus       160 ~~g~~vlI~~-~g~vg~~a~~la~~~-G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~~~~~d~vld~  237 (340)
T TIGR00692       160 ISGKSVLVTG-AGPIGLMAIAVAKAS-GAYPVIVSDPNEYRLELAKKMGATYVVNPFKEDVVKEVADLTDGEGVDVFLEM  237 (340)
T ss_pred             CCCCEEEEEC-CCHHHHHHHHHHHHc-CCcEEEEECCCHHHHHHHHHhCCcEEEcccccCHHHHHHHhcCCCCCCEEEEC
Confidence            7999999976 799999999999995 997 66666788889999999999999886654422    1  3579999999


Q ss_pred             Ccc---HHHHHHhcccCCeEEEEcCCCCCCc-----------eEEEE---eecHHHHHHHHHHHHCCCcccccCCCcccc
Q 016265          304 IGQ---CDRAVKAIKEGGTVVALTGAVTPPG-----------FRFVV---TSNGEVLKKLNPYLESGKVKPIIDPKGPFP  366 (392)
Q Consensus       304 ~G~---~~~~~~~l~~~G~iv~~g~~~~~~~-----------~~~~~---~~~~~~~~~~~~~l~~g~l~~~~~~t~~~~  366 (392)
                      +|.   +..++++++++|+++.+|.......           +.+..   ....+.+.++++++++|+++....+++.|+
T Consensus       238 ~g~~~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~  317 (340)
T TIGR00692       238 SGAPKALEQGLQAVTPGGRVSLLGLPPGKVTIDFTNKVIFKGLTIYGITGRHMFETWYTVSRLIQSGKLDLDPIITHKFK  317 (340)
T ss_pred             CCCHHHHHHHHHhhcCCCEEEEEccCCCCcccchhhhhhhcceEEEEEecCCchhhHHHHHHHHHcCCCChHHheeeeee
Confidence            873   5788999999999999985421100           11110   112345788999999999974333568899


Q ss_pred             hhhHHHHHHHHHhCCCCeeEEEEe
Q 016265          367 FSQVVEAFSYIETNKATGKVVIHP  390 (392)
Q Consensus       367 l~~~~~A~~~l~~~~~~gKvvl~~  390 (392)
                      ++++.++++.+.+++. ||+|+.+
T Consensus       318 l~~~~~a~~~~~~~~~-gkvvv~~  340 (340)
T TIGR00692       318 FDKFEKGFELMRSGQT-GKVILSL  340 (340)
T ss_pred             HHHHHHHHHHHhcCCC-ceEEEeC
Confidence            9999999999998874 9999874

E. coli His-90 modulates substrate specificity and is believed part of the active site.

>COG2130 Putative NADP-dependent oxidoreductases [General function prediction only]

Probab=100.00  E-value=4.6e-33  Score=251.15  Aligned_cols=276  Identities=26%  Similarity=0.355  Sum_probs=220.1

Q ss_pred             ceEEEeccccCCCCCCCeEEEEEeEEecChHhHHhhcCCCCCCC-CCCCCcCCCceeEEEEEeC--CCCCCCCCCCEEEe
Q 016265           96 DVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATD-SPLPTVPGYDVAGVVVKVG--TQVKEFKEGDEVYG  172 (392)
Q Consensus        96 ~~l~~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~-~~~p~v~G~e~~G~V~~vG--~~v~~~~vGdrV~~  172 (392)
                      +.++++ +.++|+|++||||||+.|.+++|.-    +|.+...+ .-.|.-+|-..+|-++...  |+..+|++||.|..
T Consensus        25 d~F~le-e~~vp~p~~GqvLl~~~ylS~DPym----Rgrm~d~~SY~~P~~lG~~~~gg~V~~Vv~S~~~~f~~GD~V~~   99 (340)
T COG2130          25 DDFRLE-EVDVPEPGEGQVLLRTLYLSLDPYM----RGRMSDAPSYAPPVELGEVMVGGTVAKVVASNHPGFQPGDIVVG   99 (340)
T ss_pred             CCceeE-eccCCCCCcCceEEEEEEeccCHHH----eecccCCcccCCCcCCCceeECCeeEEEEecCCCCCCCCCEEEe
Confidence            458888 8999999999999999999999954    33332221 2235667766654443332  56789999999998


Q ss_pred             cccccccCCCCCCCcceeEEEecCCceeeCCCCCCHHh--HhccchhHHHHHHHHH-hcCCCCCCeEEEEcCCCcHHHHH
Q 016265          173 DINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQ--AAGLPLAIETAYEGLE-RTGFSAGKSILVLNGSGGVGSLV  249 (392)
Q Consensus       173 ~~~~~~~~~~~~~G~~a~~~~v~~~~~~~iP~~l~~~~--aa~l~~~~~ta~~al~-~~~~~~g~~VlI~Ga~G~vG~~a  249 (392)
                      .            .+|+||..++.+.+.++.+..-+..  ...+.++..|||.+|. .++.++||+|+|.+|+|++|..+
T Consensus       100 ~------------~GWq~y~i~~~~~l~Kvd~~~~pl~~~LgvLGmpG~TAY~gLl~igqpk~GetvvVSaAaGaVGsvv  167 (340)
T COG2130         100 V------------SGWQEYAISDGEGLRKLDPSPAPLSAYLGVLGMPGLTAYFGLLDIGQPKAGETVVVSAAAGAVGSVV  167 (340)
T ss_pred             c------------ccceEEEeechhhceecCCCCCCcchHHhhcCCchHHHHHHHHHhcCCCCCCEEEEEecccccchHH
Confidence            5            5799999999999999975432222  2235778899999995 57899999999999999999999


Q ss_pred             HHHHHHhcCCeEEEEeCCcccHHHHHh-cCCcEEEeCCCCcccc-----CCCCccEEEecCc--cHHHHHHhcccCCeEE
Q 016265          250 IQLAKQVFGASRVAATSSTRNLEFLKS-LGADLAIDYTKDNFED-----LPEKFDVVYDAIG--QCDRAVKAIKEGGTVV  321 (392)
Q Consensus       250 iqlak~~~G~~vv~~~~~~~~~~~~~~-~G~~~vi~~~~~~~~~-----~~~~~D~vid~~G--~~~~~~~~l~~~G~iv  321 (392)
                      .|+||. .|++||.+..+++|.+++++ +|.|.+|||+.+++.+     .++|+|+.||++|  .++..+..|+..+|++
T Consensus       168 gQiAKl-kG~rVVGiaGg~eK~~~l~~~lGfD~~idyk~~d~~~~L~~a~P~GIDvyfeNVGg~v~DAv~~~ln~~aRi~  246 (340)
T COG2130         168 GQIAKL-KGCRVVGIAGGAEKCDFLTEELGFDAGIDYKAEDFAQALKEACPKGIDVYFENVGGEVLDAVLPLLNLFARIP  246 (340)
T ss_pred             HHHHHh-hCCeEEEecCCHHHHHHHHHhcCCceeeecCcccHHHHHHHHCCCCeEEEEEcCCchHHHHHHHhhcccccee
Confidence            999998 59999999999999999987 9999999999998754     3779999999999  4799999999999999


Q ss_pred             EEcCCC------CC---CceE-----------EEE-e---e-cHHHHHHHHHHHHCCCcccccCCCcccchhhHHHHHHH
Q 016265          322 ALTGAV------TP---PGFR-----------FVV-T---S-NGEVLKKLNPYLESGKVKPIIDPKGPFPFSQVVEAFSY  376 (392)
Q Consensus       322 ~~g~~~------~~---~~~~-----------~~~-~---~-~~~~~~~~~~~l~~g~l~~~~~~t~~~~l~~~~~A~~~  376 (392)
                      .+|.-.      .+   ..+.           |+. .   . -++.++++..|+++|+|+....  -.-.|+.+++||..
T Consensus       247 ~CG~IS~YN~~~~~~gp~~l~~l~~kr~~v~Gfiv~~~~~~~~~e~~~~l~~wv~~GKi~~~et--i~dGlEnaP~Af~g  324 (340)
T COG2130         247 VCGAISQYNAPELPPGPRRLPLLMAKRLRVQGFIVASDYDQRFPEALRELGGWVKEGKIQYRET--IVDGLENAPEAFIG  324 (340)
T ss_pred             eeeehhhcCCCCCCCCcchhhHHHhhhheeEEEEechhhhhhhHHHHHHHHHHHHcCceeeEee--ehhhhhccHHHHHH
Confidence            997432      11   1111           111 1   1 1366789999999999998753  45679999999999


Q ss_pred             HHhCCCCeeEEEEeC
Q 016265          377 IETNKATGKVVIHPI  391 (392)
Q Consensus       377 l~~~~~~gKvvl~~~  391 (392)
                      |.+|+..||.|++..
T Consensus       325 Ll~G~N~GK~vvKv~  339 (340)
T COG2130         325 LLSGKNFGKLVVKVA  339 (340)
T ss_pred             HhcCCccceEEEEec
Confidence            999999999999864

>cd08271 MDR5 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=100.00  E-value=1.2e-31  Score=256.51  Aligned_cols=294  Identities=36%  Similarity=0.535  Sum_probs=238.8

Q ss_pred             eeEEEEcccCCcceEEEeccccCCCCCCCeEEEEEeEEecChHhHHhhcCCCCCCCCCCCCcCCCceeEEEEEeCCCCCC
Q 016265           84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKE  163 (392)
Q Consensus        84 mka~v~~~~~~~~~l~~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~~~p~v~G~e~~G~V~~vG~~v~~  163 (392)
                      |||+++.+++..+.++++ +.+.|.+.+++|+||+.++++|++|++...|.+..  ..+|.++|||++|+|+.+|++++.
T Consensus         1 ~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~--~~~~~~~g~e~~G~v~~~G~~~~~   77 (325)
T cd08271           1 MKAWVLPKPGAALQLTLE-EIEIPGPGAGEVLVKVHAAGLNPVDWKVIAWGPPA--WSYPHVPGVDGAGVVVAVGAKVTG   77 (325)
T ss_pred             CeeEEEccCCCcceeEEe-ccCCCCCCCCEEEEEEEEEecCHHHHHHhcCCCCC--CCCCcccccceEEEEEEeCCCCCc
Confidence            799999988843348888 89999999999999999999999999988776432  223678999999999999999999


Q ss_pred             CCCCCEEEecccccccCCCCCCCcceeEEEecCCceeeCCCCCCHHhHhccchhHHHHHHHHH-hcCCCCCCeEEEEcCC
Q 016265          164 FKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLE-RTGFSAGKSILVLNGS  242 (392)
Q Consensus       164 ~~vGdrV~~~~~~~~~~~~~~~G~~a~~~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~al~-~~~~~~g~~VlI~Ga~  242 (392)
                      +++||+|++....      ...|+|++|+.++.+.++++|+++++.+++.+++.+.++|+++. ...+++|++|+|+|++
T Consensus        78 ~~~Gd~V~~~~~~------~~~~~~~s~~~~~~~~~~~ip~~~~~~~~a~~~~~~~~a~~~~~~~~~~~~g~~vlI~g~~  151 (325)
T cd08271          78 WKVGDRVAYHASL------ARGGSFAEYTVVDARAVLPLPDSLSFEEAAALPCAGLTAYQALFKKLRIEAGRTILITGGA  151 (325)
T ss_pred             CCCCCEEEeccCC------CCCccceeEEEeCHHHeEECCCCCCHHHHHhhhhhHHHHHHHHHHhcCCCCCCEEEEECCc
Confidence            9999999986421      12589999999999999999999999999999999999999985 4788999999999988


Q ss_pred             CcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCCcccc------CCCCccEEEecCcc--HHHHHHhc
Q 016265          243 GGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFED------LPEKFDVVYDAIGQ--CDRAVKAI  314 (392)
Q Consensus       243 G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~~------~~~~~D~vid~~G~--~~~~~~~l  314 (392)
                      |++|++++++|+. .|++++++. ++++.+.++++|++.+++.....+.+      ..+++|++++++|.  ...+++++
T Consensus       152 ~~ig~~~~~~a~~-~g~~v~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~~~~~~~~~l  229 (325)
T cd08271         152 GGVGSFAVQLAKR-AGLRVITTC-SKRNFEYVKSLGADHVIDYNDEDVCERIKEITGGRGVDAVLDTVGGETAAALAPTL  229 (325)
T ss_pred             cHHHHHHHHHHHH-cCCEEEEEE-cHHHHHHHHHcCCcEEecCCCccHHHHHHHHcCCCCCcEEEECCCcHhHHHHHHhh
Confidence            9999999999999 599988776 66788888899999998876544322      13579999999883  46789999


Q ss_pred             ccCCeEEEEcCCCCC-------CceEEE---E------e------ecHHHHHHHHHHHHCCCcccccCCCcccchhhHHH
Q 016265          315 KEGGTVVALTGAVTP-------PGFRFV---V------T------SNGEVLKKLNPYLESGKVKPIIDPKGPFPFSQVVE  372 (392)
Q Consensus       315 ~~~G~iv~~g~~~~~-------~~~~~~---~------~------~~~~~~~~~~~~l~~g~l~~~~~~t~~~~l~~~~~  372 (392)
                      +++|+++.++.....       ..+.+.   +      .      ...+.+.+++++++++.+++.  .++.|+++++.+
T Consensus       230 ~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~--~~~~~~~~~~~~  307 (325)
T cd08271         230 AFNGHLVCIQGRPDASPDPPFTRALSVHEVALGAAHDHGDPAAWQDLRYAGEELLELLAAGKLEPL--VIEVLPFEQLPE  307 (325)
T ss_pred             ccCCEEEEEcCCCCCcchhHHhhcceEEEEEecccccccchhhHHHHHHHHHHHHHHHHCCCeeec--cceEEcHHHHHH
Confidence            999999988643211       011110   0      0      012345778889999998764  467899999999


Q ss_pred             HHHHHHhCCCCeeEEEEe
Q 016265          373 AFSYIETNKATGKVVIHP  390 (392)
Q Consensus       373 A~~~l~~~~~~gKvvl~~  390 (392)
                      +++.+.++...+|+++++
T Consensus       308 a~~~~~~~~~~~kiv~~~  325 (325)
T cd08271         308 ALRALKDRHTRGKIVVTI  325 (325)
T ss_pred             HHHHHHcCCccceEEEEC
Confidence            999999888889998864

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd05288 PGDH Prostaglandin dehydrogenases

Probab=100.00  E-value=1.1e-31  Score=257.78  Aligned_cols=287  Identities=26%  Similarity=0.329  Sum_probs=227.7

Q ss_pred             eeEEEEcccC----CcceEEEeccccCCCCCCCeEEEEEeEEecChHhHHhhcCCCCC-CCCCCCCcCCCceeEEEEEeC
Q 016265           84 MKAWLYGEYG----GVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKA-TDSPLPTVPGYDVAGVVVKVG  158 (392)
Q Consensus        84 mka~v~~~~~----~~~~l~~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~-~~~~~p~v~G~e~~G~V~~vG  158 (392)
                      .|||+++..+    .++.++++ +.+.|++.+++|+||+.++++|+.|.....+.... .+...+.++|+|++|+|+++|
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~-~~~~p~~~~~~v~Vkv~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~~G   80 (329)
T cd05288           2 NRQVVLAKRPEGPPPPDDFELV-EVPLPELKDGEVLVRTLYLSVDPYMRGWMSDAKSYSPPVQLGEPMRGGGVGEVVESR   80 (329)
T ss_pred             CcEEEEeccCCCCCCccceeEE-eccCCCCCCCeEEEEEEEEecCHHHhhhhccCcccCCCccCCCcccCceEEEEEecC
Confidence            3677776554    44678888 89999999999999999999999887655543211 111234678999999999999


Q ss_pred             CCCCCCCCCCEEEecccccccCCCCCCCcceeEEEecC-CceeeCCCCCC--HHhHhc-cchhHHHHHHHHH-hcCCCCC
Q 016265          159 TQVKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEE-RLLAPKPKNLD--FVQAAG-LPLAIETAYEGLE-RTGFSAG  233 (392)
Q Consensus       159 ~~v~~~~vGdrV~~~~~~~~~~~~~~~G~~a~~~~v~~-~~~~~iP~~l~--~~~aa~-l~~~~~ta~~al~-~~~~~~g  233 (392)
                      ++  ++++||+|++.            ++|++|+.++. +.++++|++++  +.+++. +++++.|||+++. ...+.+|
T Consensus        81 ~~--~~~~Gd~V~~~------------~~~~~~~~v~~~~~~~~lP~~~~~~~~~~~~~l~~~~~ta~~~l~~~~~~~~~  146 (329)
T cd05288          81 SP--DFKVGDLVSGF------------LGWQEYAVVDGASGLRKLDPSLGLPLSAYLGVLGMTGLTAYFGLTEIGKPKPG  146 (329)
T ss_pred             CC--CCCCCCEEecc------------cceEEEEEecchhhcEECCcccCCCHHHHHHhcccHHHHHHHHHHhccCCCCC
Confidence            64  79999999973            58999999999 99999999995  555555 8889999999985 4678999


Q ss_pred             CeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHh-cCCcEEEeCCCCcccc-----CCCCccEEEecCc--
Q 016265          234 KSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKS-LGADLAIDYTKDNFED-----LPEKFDVVYDAIG--  305 (392)
Q Consensus       234 ~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~-~G~~~vi~~~~~~~~~-----~~~~~D~vid~~G--  305 (392)
                      ++|+|+|++|++|++++|+|+. .|++++++++++++.+.+++ +|+++++++++.++.+     ..+++|++|||+|  
T Consensus       147 ~~vlI~g~~g~ig~~~~~~a~~-~G~~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~~~~~~~~d~vi~~~g~~  225 (329)
T cd05288         147 ETVVVSAAAGAVGSVVGQIAKL-LGARVVGIAGSDEKCRWLVEELGFDAAINYKTPDLAEALKEAAPDGIDVYFDNVGGE  225 (329)
T ss_pred             CEEEEecCcchHHHHHHHHHHH-cCCEEEEEeCCHHHHHHHHhhcCCceEEecCChhHHHHHHHhccCCceEEEEcchHH
Confidence            9999999999999999999999 59999999999999999988 9999999987654322     1357999999998  


Q ss_pred             cHHHHHHhcccCCeEEEEcCCCCCC----------------ceEEEE---eec----HHHHHHHHHHHHCCCcccccCCC
Q 016265          306 QCDRAVKAIKEGGTVVALTGAVTPP----------------GFRFVV---TSN----GEVLKKLNPYLESGKVKPIIDPK  362 (392)
Q Consensus       306 ~~~~~~~~l~~~G~iv~~g~~~~~~----------------~~~~~~---~~~----~~~~~~~~~~l~~g~l~~~~~~t  362 (392)
                      .++.++++++++|+++.+|......                ...+..   ...    .+.+.++++++.+|.+++..  .
T Consensus       226 ~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~--~  303 (329)
T cd05288         226 ILDAALTLLNKGGRIALCGAISQYNATEPPGPKNLGNIITKRLTMQGFIVSDYADRFPEALAELAKWLAEGKLKYRE--D  303 (329)
T ss_pred             HHHHHHHhcCCCceEEEEeeccCcccccccccccHHHHhhCcceEEeecchhhHHHHHHHHHHHHHHHHCCCccccc--c
Confidence            4688999999999999987543110                111111   011    24578889999999988753  3


Q ss_pred             cccchhhHHHHHHHHHhCCCCeeEEE
Q 016265          363 GPFPFSQVVEAFSYIETNKATGKVVI  388 (392)
Q Consensus       363 ~~~~l~~~~~A~~~l~~~~~~gKvvl  388 (392)
                      ..++++++.++++.+.+++..||+++
T Consensus       304 ~~~~l~~~~~a~~~~~~~~~~gkvvv  329 (329)
T cd05288         304 VVEGLENAPEAFLGLFTGKNTGKLVV  329 (329)
T ss_pred             ccccHHHHHHHHHHHhcCCCccceeC
Confidence            56899999999999998888888874

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino

>cd08251 polyketide_synthase polyketide synthase

Probab=100.00  E-value=9.2e-32  Score=254.38  Aligned_cols=272  Identities=31%  Similarity=0.533  Sum_probs=227.3

Q ss_pred             CCCCCCCeEEEEEeEEecChHhHHhhcCCCCCCCCCCCCcCCCceeEEEEEeCCCCCCCCCCCEEEecccccccCCCCCC
Q 016265          106 VPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKEFKEGDEVYGDINEKALEGPKQF  185 (392)
Q Consensus       106 ~p~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~~~p~v~G~e~~G~V~~vG~~v~~~~vGdrV~~~~~~~~~~~~~~~  185 (392)
                      .|.+.+++|+||+.++++|+.|++.+.|.++. ...+|.++|||++|+|+++|+++.++++||+|++...       ...
T Consensus         2 ~p~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~-~~~~~~~~g~e~~G~v~~~G~~v~~~~~Gd~V~~~~~-------~~~   73 (303)
T cd08251           2 VAPPGPGEVRIQVRAFSLNFGDLLCVRGLYPT-MPPYPFTPGFEASGVVRAVGPHVTRLAVGDEVIAGTG-------ESM   73 (303)
T ss_pred             CCCCCCCEEEEEEEEeecChHHHHHHCCCCCC-CCCCCCCcCceeeEEEEEECCCCCCCCCCCEEEEecC-------CCC
Confidence            56789999999999999999999999887642 2356889999999999999999999999999998642       135


Q ss_pred             CcceeEEEecCCceeeCCCCCCHHhHhccchhHHHHHHHHHhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEe
Q 016265          186 GSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAAT  265 (392)
Q Consensus       186 G~~a~~~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~al~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~  265 (392)
                      |+|++|+.++.+.++++|+++++++++.+++++.+||++++...+++|++|+|+|++|++|++++|+|+.+ |+++++++
T Consensus        74 g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~g~~vli~~~~~~~g~~~~~~a~~~-g~~v~~~~  152 (303)
T cd08251          74 GGHATLVTVPEDQVVRKPASLSFEEACALPVVFLTVIDAFARAGLAKGEHILIQTATGGTGLMAVQLARLK-GAEIYATA  152 (303)
T ss_pred             cceeeEEEccHHHeEECCCCCCHHHHHHhHHHHHHHHHHHHhcCCCCCCEEEEecCCcHHHHHHHHHHHHc-CCEEEEEc
Confidence            89999999999999999999999999999999999999998889999999999999999999999999995 99999999


Q ss_pred             CCcccHHHHHhcCCcEEEeCCCCcccc----C--CCCccEEEecCc--cHHHHHHhcccCCeEEEEcCCCCC--C-----
Q 016265          266 SSTRNLEFLKSLGADLAIDYTKDNFED----L--PEKFDVVYDAIG--QCDRAVKAIKEGGTVVALTGAVTP--P-----  330 (392)
Q Consensus       266 ~~~~~~~~~~~~G~~~vi~~~~~~~~~----~--~~~~D~vid~~G--~~~~~~~~l~~~G~iv~~g~~~~~--~-----  330 (392)
                      +++++++.++++|++.+++....++.+    .  .+++|+++|+++  ....++++++++|+++.++.....  .     
T Consensus       153 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~~~d~v~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~  232 (303)
T cd08251         153 SSDDKLEYLKQLGVPHVINYVEEDFEEEIMRLTGGRGVDVVINTLSGEAIQKGLNCLAPGGRYVEIAMTALKSAPSVDLS  232 (303)
T ss_pred             CCHHHHHHHHHcCCCEEEeCCCccHHHHHHHHcCCCCceEEEECCcHHHHHHHHHHhccCcEEEEEeccCCCccCccChh
Confidence            988999999999999999877654322    1  357999999987  357889999999999998654311  0     


Q ss_pred             ----ceEEE-Ee------e----cHHHHHHHHHHHHCCCcccccCCCcccchhhHHHHHHHHHhCCCCeeEEE
Q 016265          331 ----GFRFV-VT------S----NGEVLKKLNPYLESGKVKPIIDPKGPFPFSQVVEAFSYIETNKATGKVVI  388 (392)
Q Consensus       331 ----~~~~~-~~------~----~~~~~~~~~~~l~~g~l~~~~~~t~~~~l~~~~~A~~~l~~~~~~gKvvl  388 (392)
                          ...+. ..      .    ..+.+.++.+++.+|.+++.  .++.|++++++++++.+.+++..||+++
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~iv~  303 (303)
T cd08251         233 VLSNNQSFHSVDLRKLLLLDPEFIADYQAEMVSLVEEGELRPT--VSRIFPFDDIGEAYRYLSDRENIGKVVV  303 (303)
T ss_pred             HhhcCceEEEEehHHhhhhCHHHHHHHHHHHHHHHHCCCccCC--CceEEcHHHHHHHHHHHHhCCCcceEeC
Confidence                11111 10      0    12346778889999988754  5688999999999999999888888874

Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde a

>cd08267 MDR1 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=100.00  E-value=1.5e-31  Score=255.04  Aligned_cols=290  Identities=42%  Similarity=0.667  Sum_probs=230.5

Q ss_pred             EEcccCCcceE--EEeccccCCCCCCCeEEEEEeEEecChHhHHhhcCCCCCC-CCCCCCcCCCceeEEEEEeCCCCCCC
Q 016265           88 LYGEYGGVDVL--KFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKAT-DSPLPTVPGYDVAGVVVKVGTQVKEF  164 (392)
Q Consensus        88 v~~~~~~~~~l--~~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~-~~~~p~v~G~e~~G~V~~vG~~v~~~  164 (392)
                      +++..++.+.+  +++ +.+.|.++++||+|++.++++|++|++.+.|.++.. ...+|..+|||++|+|+++|+++.++
T Consensus         2 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~g~e~~G~v~~~G~~v~~~   80 (319)
T cd08267           2 VYTRYGSPEVLLLLEV-EVPIPTPKPGEVLVKVHAASVNPVDWKLRRGPPKLLLGRPFPPIPGMDFAGEVVAVGSGVTRF   80 (319)
T ss_pred             eeCCCCChhhhhhccc-cCCCCCCCCCEEEEEEEEeeCCHHHHHHHcCCCcccccCCCCCcccceeeEEEEEeCCCCCCC
Confidence            34555555444  777 788999999999999999999999999888765211 12346789999999999999999999


Q ss_pred             CCCCEEEecccccccCCCCCCCcceeEEEecCCceeeCCCCCCHHhHhccchhHHHHHHHHHhc-CCCCCCeEEEEcCCC
Q 016265          165 KEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLERT-GFSAGKSILVLNGSG  243 (392)
Q Consensus       165 ~vGdrV~~~~~~~~~~~~~~~G~~a~~~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~al~~~-~~~~g~~VlI~Ga~G  243 (392)
                      ++||+|++....      ...|+|++|+.++.+.++++|+++++++++.+++++.+||+++... .+++|++|+|+|++|
T Consensus        81 ~~Gd~V~~~~~~------~~~g~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~g~~vli~g~~g  154 (319)
T cd08267          81 KVGDEVFGRLPP------KGGGALAEYVVAPESGLAKKPEGVSFEEAAALPVAGLTALQALRDAGKVKPGQRVLINGASG  154 (319)
T ss_pred             CCCCEEEEeccC------CCCceeeEEEEechhheEECCCCCCHHHHHhhhhHHHHHHHHHHHhcCCCCCCEEEEEcCCc
Confidence            999999986421      1258999999999999999999999999999999999999999654 589999999999889


Q ss_pred             cHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCCccc---cCCCCccEEEecCcc--H--HHHHHhccc
Q 016265          244 GVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFE---DLPEKFDVVYDAIGQ--C--DRAVKAIKE  316 (392)
Q Consensus       244 ~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~---~~~~~~D~vid~~G~--~--~~~~~~l~~  316 (392)
                      ++|++++++|+. .|+++++++.+ ++.+.++++|++++++.....+.   ...+++|+++||+|.  .  ...+..+++
T Consensus       155 ~~g~~~~~la~~-~g~~v~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~~~~~~~~~~~l~~  232 (319)
T cd08267         155 GVGTFAVQIAKA-LGAHVTGVCST-RNAELVRSLGADEVIDYTTEDFVALTAGGEKYDVIFDAVGNSPFSLYRASLALKP  232 (319)
T ss_pred             HHHHHHHHHHHH-cCCEEEEEeCH-HHHHHHHHcCCCEeecCCCCCcchhccCCCCCcEEEECCCchHHHHHHhhhccCC
Confidence            999999999999 49998887765 88888999999888887654442   223579999999983  2  233334999


Q ss_pred             CCeEEEEcCCCCCC--c--------------eEE-EEeecHHHHHHHHHHHHCCCcccccCCCcccchhhHHHHHHHHHh
Q 016265          317 GGTVVALTGAVTPP--G--------------FRF-VVTSNGEVLKKLNPYLESGKVKPIIDPKGPFPFSQVVEAFSYIET  379 (392)
Q Consensus       317 ~G~iv~~g~~~~~~--~--------------~~~-~~~~~~~~~~~~~~~l~~g~l~~~~~~t~~~~l~~~~~A~~~l~~  379 (392)
                      +|+++.+|......  .              +.. ......+.+.+++++++++++++.  +++.|+++++++||+.+.+
T Consensus       233 ~g~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~i~~a~~~~~~  310 (319)
T cd08267         233 GGRYVSVGGGPSGLLLVLLLLPLTLGGGGRRLKFFLAKPNAEDLEQLAELVEEGKLKPV--IDSVYPLEDAPEAYRRLKS  310 (319)
T ss_pred             CCEEEEeccccccccccccccchhhccccceEEEEEecCCHHHHHHHHHHHHCCCeeee--eeeEEcHHHHHHHHHHHhc
Confidence            99999997543110  0              000 111136778999999999998764  5688999999999999998


Q ss_pred             CCCCeeEEE
Q 016265          380 NKATGKVVI  388 (392)
Q Consensus       380 ~~~~gKvvl  388 (392)
                      ++..+|+++
T Consensus       311 ~~~~~~vvv  319 (319)
T cd08267         311 GRARGKVVI  319 (319)
T ss_pred             CCCCCcEeC
Confidence            887788874

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08268 MDR2 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=100.00  E-value=4.3e-31  Score=252.44  Aligned_cols=298  Identities=33%  Similarity=0.526  Sum_probs=240.6

Q ss_pred             eeEEEEcccCCcceEEEeccccCCCCCCCeEEEEEeEEecChHhHHhhcCCCCCCCCCCCCcCCCceeEEEEEeCCCCCC
Q 016265           84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKE  163 (392)
Q Consensus        84 mka~v~~~~~~~~~l~~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~~~p~v~G~e~~G~V~~vG~~v~~  163 (392)
                      ||++++...+....+++. +.+.|.+++++++|++.++++|+.|+....|.+... ..+|.++|||++|+|+.+|+++.+
T Consensus         1 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~i~v~~~~~~~~d~~~~~~~~~~~-~~~~~~~g~e~~G~v~~~G~~~~~   78 (328)
T cd08268           1 MRAVRFHQFGGPEVLRIE-ELPVPAPGAGEVLIRVEAIGLNRADAMFRRGAYIEP-PPLPARLGYEAAGVVEAVGAGVTG   78 (328)
T ss_pred             CeEEEEeccCCcceeEEe-ecCCCCCCCCeEEEEEEEEecChHHhheeccccCCC-CCCCCCCCcceEEEEEeeCCCCCc
Confidence            689999877766667887 778788999999999999999999998887765422 345788999999999999999999


Q ss_pred             CCCCCEEEecccccccCCCCCCCcceeEEEecCCceeeCCCCCCHHhHhccchhHHHHHHHHH-hcCCCCCCeEEEEcCC
Q 016265          164 FKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLE-RTGFSAGKSILVLNGS  242 (392)
Q Consensus       164 ~~vGdrV~~~~~~~~~~~~~~~G~~a~~~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~al~-~~~~~~g~~VlI~Ga~  242 (392)
                      +++||+|++....    .....|++++|+.++.+.++++|+++++++++.+++++.++|+++. ...+.++++|+|+|++
T Consensus        79 ~~~Gd~V~~~~~~----~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~vli~g~~  154 (328)
T cd08268          79 FAVGDRVSVIPAA----DLGQYGTYAEYALVPAAAVVKLPDGLSFVEAAALWMQYLTAYGALVELAGLRPGDSVLITAAS  154 (328)
T ss_pred             CCCCCEEEecccc----ccCCCccceEEEEechHhcEeCCCCCCHHHHHHhhhHHHHHHHHHHHhcCCCCCCEEEEecCc
Confidence            9999999986421    1123589999999999999999999999999999999999999985 5788899999999989


Q ss_pred             CcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCCcccc----C--CCCccEEEecCc--cHHHHHHhc
Q 016265          243 GGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFED----L--PEKFDVVYDAIG--QCDRAVKAI  314 (392)
Q Consensus       243 G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~~----~--~~~~D~vid~~G--~~~~~~~~l  314 (392)
                      |++|++++++++. .|++++.++.++++++.++++|.+.+++.....+.+    .  .+++|++++++|  ....+++++
T Consensus       155 ~~~g~~~~~~~~~-~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~~~~~~~~~l  233 (328)
T cd08268         155 SSVGLAAIQIANA-AGATVIATTRTSEKRDALLALGAAHVIVTDEEDLVAEVLRITGGKGVDVVFDPVGGPQFAKLADAL  233 (328)
T ss_pred             cHHHHHHHHHHHH-cCCEEEEEcCCHHHHHHHHHcCCCEEEecCCccHHHHHHHHhCCCCceEEEECCchHhHHHHHHhh
Confidence            9999999999999 599999999888899999999998888876544322    1  347999999988  357889999


Q ss_pred             ccCCeEEEEcCCCCC-----------CceEEEEe------e----cHHHHHHHHHHHHCCCcccccCCCcccchhhHHHH
Q 016265          315 KEGGTVVALTGAVTP-----------PGFRFVVT------S----NGEVLKKLNPYLESGKVKPIIDPKGPFPFSQVVEA  373 (392)
Q Consensus       315 ~~~G~iv~~g~~~~~-----------~~~~~~~~------~----~~~~~~~~~~~l~~g~l~~~~~~t~~~~l~~~~~A  373 (392)
                      +++|+++.++.....           .+..+...      .    ....++.+.+++.++.+.+.  .++.|+++++.++
T Consensus       234 ~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~  311 (328)
T cd08268         234 APGGTLVVYGALSGEPTPFPLKAALKKSLTFRGYSLDEITLDPEARRRAIAFILDGLASGALKPV--VDRVFPFDDIVEA  311 (328)
T ss_pred             ccCCEEEEEEeCCCCCCCCchHHHhhcCCEEEEEecccccCCHHHHHHHHHHHHHHHHCCCCcCC--cccEEcHHHHHHH
Confidence            999999998743210           11111110      1    12345566677778887764  4678999999999


Q ss_pred             HHHHHhCCCCeeEEEEe
Q 016265          374 FSYIETNKATGKVVIHP  390 (392)
Q Consensus       374 ~~~l~~~~~~gKvvl~~  390 (392)
                      ++.+.++...+|+++++
T Consensus       312 ~~~~~~~~~~~~vv~~~  328 (328)
T cd08268         312 HRYLESGQQIGKIVVTP  328 (328)
T ss_pred             HHHHHcCCCCceEEEeC
Confidence            99999888889999864

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>TIGR02824 quinone_pig3 putative NAD(P)H quinone oxidoreductase, PIG3 family

Probab=100.00  E-value=4.6e-31  Score=251.89  Aligned_cols=292  Identities=34%  Similarity=0.540  Sum_probs=239.1

Q ss_pred             eeEEEEcccCCcceEEEeccccCCCCCCCeEEEEEeEEecChHhHHhhcCCCCCCCCCCCCcCCCceeEEEEEeCCCCCC
Q 016265           84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKE  163 (392)
Q Consensus        84 mka~v~~~~~~~~~l~~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~~~p~v~G~e~~G~V~~vG~~v~~  163 (392)
                      |||+++...+....+++. +.+.|.+++++++|++.++++|+.|++...+.++.. ..+|.++|||++|+|+.+|+++.+
T Consensus         1 ~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~v~i~v~~~~~~~~d~~~~~~~~~~~-~~~~~~~g~e~~G~v~~vg~~~~~   78 (325)
T TIGR02824         1 MKAIEITEPGGPEVLVLV-EVPLPVPKAGEVLIRVAAAGVNRPDLLQRAGKYPPP-PGASDILGLEVAGEVVAVGEGVSR   78 (325)
T ss_pred             CceEEEccCCCcccceEE-eCCCCCCCCCEEEEEEEEEecCHHHHHHhcCCCCCC-CCCCCCccceeEEEEEEeCCCCCC
Confidence            689998877766667777 677777899999999999999999999888765422 335789999999999999999999


Q ss_pred             CCCCCEEEecccccccCCCCCCCcceeEEEecCCceeeCCCCCCHHhHhccchhHHHHHHHH-HhcCCCCCCeEEEEcCC
Q 016265          164 FKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGL-ERTGFSAGKSILVLNGS  242 (392)
Q Consensus       164 ~~vGdrV~~~~~~~~~~~~~~~G~~a~~~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~al-~~~~~~~g~~VlI~Ga~  242 (392)
                      +++||+|++...         +|+|++|+.++...++++|+++++.+++.+++++.|+|+++ +...+++|++|+|+|++
T Consensus        79 ~~~Gd~V~~~~~---------~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~ta~~~~~~~~~~~~~~~vlv~g~~  149 (325)
T TIGR02824        79 WKVGDRVCALVA---------GGGYAEYVAVPAGQVLPVPEGLSLVEAAALPETFFTVWSNLFQRGGLKAGETVLIHGGA  149 (325)
T ss_pred             CCCCCEEEEccC---------CCcceeEEEecHHHcEeCCCCCCHHHHHhhhHHHHHHHHHHHHhcCCCCCCEEEEEcCc
Confidence            999999998632         48999999999999999999999999999999999999987 56789999999999999


Q ss_pred             CcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCCcccc------CCCCccEEEecCc--cHHHHHHhc
Q 016265          243 GGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFED------LPEKFDVVYDAIG--QCDRAVKAI  314 (392)
Q Consensus       243 G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~~------~~~~~D~vid~~G--~~~~~~~~l  314 (392)
                      |++|++++++++. .|++++++.+++++.+.++++|++.+++.....+.+      ..+++|++++++|  ....+++++
T Consensus       150 ~~~g~~~~~~a~~-~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~l  228 (325)
T TIGR02824       150 SGIGTTAIQLAKA-FGARVFTTAGSDEKCAACEALGADIAINYREEDFVEVVKAETGGKGVDVILDIVGGSYLNRNIKAL  228 (325)
T ss_pred             chHHHHHHHHHHH-cCCEEEEEeCCHHHHHHHHHcCCcEEEecCchhHHHHHHHHcCCCCeEEEEECCchHHHHHHHHhh
Confidence            9999999999999 599999998888888888999998888766543321      1347999999988  357889999


Q ss_pred             ccCCeEEEEcCCCC-----------CCceEEEE---ee---------cHHHHHHHHHHHHCCCcccccCCCcccchhhHH
Q 016265          315 KEGGTVVALTGAVT-----------PPGFRFVV---TS---------NGEVLKKLNPYLESGKVKPIIDPKGPFPFSQVV  371 (392)
Q Consensus       315 ~~~G~iv~~g~~~~-----------~~~~~~~~---~~---------~~~~~~~~~~~l~~g~l~~~~~~t~~~~l~~~~  371 (392)
                      +++|+++.++....           ..+..+..   ..         ....+.+++++++++.+++.  +++.|+++++.
T Consensus       229 ~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~  306 (325)
T TIGR02824       229 ALDGRIVQIGFQGGRKAELDLGPLLAKRLTITGSTLRARPVAEKAAIAAELREHVWPLLASGRVRPV--IDKVFPLEDAA  306 (325)
T ss_pred             ccCcEEEEEecCCCCcCCCChHHHHhcCCEEEEEehhhcchhhhHHHHHHHHHHHHHHHHCCcccCc--cccEEeHHHHH
Confidence            99999999875331           11111111   00         12235667888999988754  56789999999


Q ss_pred             HHHHHHHhCCCCeeEEEE
Q 016265          372 EAFSYIETNKATGKVVIH  389 (392)
Q Consensus       372 ~A~~~l~~~~~~gKvvl~  389 (392)
                      ++++.+.++...||+++.
T Consensus       307 ~~~~~~~~~~~~~~~v~~  324 (325)
T TIGR02824       307 QAHALMESGDHIGKIVLT  324 (325)
T ss_pred             HHHHHHHhCCCcceEEEe
Confidence            999999988888999875

Members of this family are putative quinone oxidoreductases that belong to the broader superfamily (modeled by Pfam pfam00107) of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxiooreductases. The alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, and members are likely to be quinone oxidoreductases instead. A member of this family in Homo sapiens, PIG3, is induced by p53 but is otherwise uncharacterized.

>cd08275 MDR3 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=100.00  E-value=2.4e-30  Score=248.66  Aligned_cols=291  Identities=35%  Similarity=0.530  Sum_probs=231.2

Q ss_pred             eEEEEcccCCcceEEEeccccCCCCCCCeEEEEEeEEecChHhHHhhcCCCCCCCCCCCCcCCCceeEEEEEeCCCCCCC
Q 016265           85 KAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKEF  164 (392)
Q Consensus        85 ka~v~~~~~~~~~l~~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~~~p~v~G~e~~G~V~~vG~~v~~~  164 (392)
                      ||+++...+....+++. +.+.|.+.+++|+||+.++++|+.|++...|.++. ....|.++|||++|+|+.+|+++.++
T Consensus         1 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~-~~~~~~~~g~e~~G~v~~~g~~~~~~   78 (337)
T cd08275           1 RAVVLTGFGGLDKLKVE-KEALPEPSSGEVRVRVEACGLNFADLMARQGLYDS-APKPPFVPGFECAGTVEAVGEGVKDF   78 (337)
T ss_pred             CeEEEcCCCCccceEEE-ecCCCCCCCCEEEEEEEEEecCHHHHHHHCCCCCC-CCCCCCCCcceeEEEEEEECCCCcCC
Confidence            46777666655557777 67778899999999999999999999988876532 23457789999999999999999999


Q ss_pred             CCCCEEEecccccccCCCCCCCcceeEEEecCCceeeCCCCCCHHhHhccchhHHHHHHHHH-hcCCCCCCeEEEEcCCC
Q 016265          165 KEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLE-RTGFSAGKSILVLNGSG  243 (392)
Q Consensus       165 ~vGdrV~~~~~~~~~~~~~~~G~~a~~~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~al~-~~~~~~g~~VlI~Ga~G  243 (392)
                      ++||+|++...         .|+|++|+.++.+.++++|+++++++++.+++++.++|+++. ...+++|++|+|+|+.|
T Consensus        79 ~~G~~V~~~~~---------~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~vli~g~~g  149 (337)
T cd08275          79 KVGDRVMGLTR---------FGGYAEVVNVPADQVFPLPDGMSFEEAAAFPVNYLTAYYALFELGNLRPGQSVLVHSAAG  149 (337)
T ss_pred             CCCCEEEEecC---------CCeeeeEEEecHHHeEECCCCCCHHHHhhhhHHHHHHHHHHHHhhCCCCCCEEEEEcCcc
Confidence            99999998642         489999999999999999999999999999999999999984 67889999999999889


Q ss_pred             cHHHHHHHHHHHhcCCeEEEEe-CCcccHHHHHhcCCcEEEeCCCCcccc-----CCCCccEEEecCc--cHHHHHHhcc
Q 016265          244 GVGSLVIQLAKQVFGASRVAAT-SSTRNLEFLKSLGADLAIDYTKDNFED-----LPEKFDVVYDAIG--QCDRAVKAIK  315 (392)
Q Consensus       244 ~vG~~aiqlak~~~G~~vv~~~-~~~~~~~~~~~~G~~~vi~~~~~~~~~-----~~~~~D~vid~~G--~~~~~~~~l~  315 (392)
                      ++|++++++|+.+ .. ++++. ..+++.+.++++|++.+++.....+.+     ..+++|+++||+|  ....++++++
T Consensus       150 ~~g~~~~~~a~~~-~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~v~~~~g~~~~~~~~~~l~  227 (337)
T cd08275         150 GVGLAAGQLCKTV-PN-VTVVGTASASKHEALKENGVTHVIDYRTQDYVEEVKKISPEGVDIVLDALGGEDTRKSYDLLK  227 (337)
T ss_pred             hHHHHHHHHHHHc-cC-cEEEEeCCHHHHHHHHHcCCcEEeeCCCCcHHHHHHHHhCCCceEEEECCcHHHHHHHHHhhc
Confidence            9999999999984 22 22222 345578888899999888876654322     2457999999998  3578899999


Q ss_pred             cCCeEEEEcCCCCC---------------------------CceEEE---E----eec---HHHHHHHHHHHHCCCcccc
Q 016265          316 EGGTVVALTGAVTP---------------------------PGFRFV---V----TSN---GEVLKKLNPYLESGKVKPI  358 (392)
Q Consensus       316 ~~G~iv~~g~~~~~---------------------------~~~~~~---~----~~~---~~~~~~~~~~l~~g~l~~~  358 (392)
                      ++|+++.+|.....                           .+..+.   .    ...   ...+.++++++.++.+++.
T Consensus       228 ~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (337)
T cd08275         228 PMGRLVVYGAANLVTGEKRSWFKLAKKWWNRPKVDPMKLISENKSVLGFNLGWLFEERELLTEVMDKLLKLYEEGKIKPK  307 (337)
T ss_pred             cCcEEEEEeecCCcCcccccccccccccccccccCHHHHhhcCceEEEeechhhhhChHHHHHHHHHHHHHHHCCCCCCc
Confidence            99999998754310                           010110   0    001   1346778889999988765


Q ss_pred             cCCCcccchhhHHHHHHHHHhCCCCeeEEEEe
Q 016265          359 IDPKGPFPFSQVVEAFSYIETNKATGKVVIHP  390 (392)
Q Consensus       359 ~~~t~~~~l~~~~~A~~~l~~~~~~gKvvl~~  390 (392)
                        .++.|++++++++++.+.++...||+++++
T Consensus       308 --~~~~~~~~~~~~~~~~~~~~~~~~kvv~~~  337 (337)
T cd08275         308 --IDSVFPFEEVGEAMRRLQSRKNIGKVVLTP  337 (337)
T ss_pred             --eeeEEcHHHHHHHHHHHHcCCCcceEEEeC
Confidence              457899999999999999988889999864

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08241 QOR1 Quinone oxidoreductase (QOR)

Probab=100.00  E-value=4.8e-30  Score=244.46  Aligned_cols=291  Identities=38%  Similarity=0.557  Sum_probs=237.4

Q ss_pred             eeEEEEcccCCcceEEEeccccCCCCC-CCeEEEEEeEEecChHhHHhhcCCCCCCCCCCCCcCCCceeEEEEEeCCCCC
Q 016265           84 MKAWLYGEYGGVDVLKFDEKVTVPQVK-EDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVK  162 (392)
Q Consensus        84 mka~v~~~~~~~~~l~~~~~~~~p~~~-~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~~~p~v~G~e~~G~V~~vG~~v~  162 (392)
                      |||+++...+....+++. +.+ |.+. +++++|++.++++|++|++.+.|.+.. ....|.++|||++|+|+.+|+++.
T Consensus         1 ~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~-~~~~~~~~g~e~~G~v~~~g~~~~   77 (323)
T cd08241           1 MKAVVCKELGGPEDLVLE-EVP-PEPGAPGEVRIRVEAAGVNFPDLLMIQGKYQV-KPPLPFVPGSEVAGVVEAVGEGVT   77 (323)
T ss_pred             CeEEEEecCCCcceeEEe-cCC-CCCCCCCeEEEEEEEEecCHHHHHHHcCCCCC-CCCCCCcccceeEEEEEEeCCCCC
Confidence            689999876665567777 666 6666 499999999999999999988876531 223466899999999999999999


Q ss_pred             CCCCCCEEEecccccccCCCCCCCcceeEEEecCCceeeCCCCCCHHhHhccchhHHHHHHHHH-hcCCCCCCeEEEEcC
Q 016265          163 EFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLE-RTGFSAGKSILVLNG  241 (392)
Q Consensus       163 ~~~vGdrV~~~~~~~~~~~~~~~G~~a~~~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~al~-~~~~~~g~~VlI~Ga  241 (392)
                      .+++||+|++..         ..|+|++|+.++.+.++++|+++++.+++.+.+++.+||+++. ...+++|++|+|+|+
T Consensus        78 ~~~~G~~V~~~~---------~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~vli~g~  148 (323)
T cd08241          78 GFKVGDRVVALT---------GQGGFAEEVVVPAAAVFPLPDGLSFEEAAALPVTYGTAYHALVRRARLQPGETVLVLGA  148 (323)
T ss_pred             CCCCCCEEEEec---------CCceeEEEEEcCHHHceeCCCCCCHHHHhhhhhHHHHHHHHHHHhcCCCCCCEEEEEcC
Confidence            999999999864         1489999999999999999999999998888899999999985 678899999999998


Q ss_pred             CCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCCcccc----C--CCCccEEEecCc--cHHHHHHh
Q 016265          242 SGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFED----L--PEKFDVVYDAIG--QCDRAVKA  313 (392)
Q Consensus       242 ~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~~----~--~~~~D~vid~~G--~~~~~~~~  313 (392)
                      .|++|++++++|+. .|+++++++.++++.+.++++|++.+++....++.+    .  .+++|+++||+|  ..+.++++
T Consensus       149 ~~~~g~~~~~~a~~-~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~~~d~v~~~~g~~~~~~~~~~  227 (323)
T cd08241         149 AGGVGLAAVQLAKA-LGARVIAAASSEEKLALARALGADHVIDYRDPDLRERVKALTGGRGVDVVYDPVGGDVFEASLRS  227 (323)
T ss_pred             CchHHHHHHHHHHH-hCCEEEEEeCCHHHHHHHHHcCCceeeecCCccHHHHHHHHcCCCCcEEEEECccHHHHHHHHHh
Confidence            89999999999999 499999999988999999999998888876644422    1  347999999998  45788999


Q ss_pred             cccCCeEEEEcCCCCCC-----------ceEEEEe-----------ecHHHHHHHHHHHHCCCcccccCCCcccchhhHH
Q 016265          314 IKEGGTVVALTGAVTPP-----------GFRFVVT-----------SNGEVLKKLNPYLESGKVKPIIDPKGPFPFSQVV  371 (392)
Q Consensus       314 l~~~G~iv~~g~~~~~~-----------~~~~~~~-----------~~~~~~~~~~~~l~~g~l~~~~~~t~~~~l~~~~  371 (392)
                      ++++|+++.++......           .+.+...           .....+.++++++.++.+.+.  .++.|+++++.
T Consensus       228 ~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~  305 (323)
T cd08241         228 LAWGGRLLVIGFASGEIPQIPANLLLLKNISVVGVYWGAYARREPELLRANLAELFDLLAEGKIRPH--VSAVFPLEQAA  305 (323)
T ss_pred             hccCCEEEEEccCCCCcCcCCHHHHhhcCcEEEEEecccccchhHHHHHHHHHHHHHHHHCCCcccc--cceEEcHHHHH
Confidence            99999999987532110           1111110           012457888999999988654  56889999999


Q ss_pred             HHHHHHHhCCCCeeEEEE
Q 016265          372 EAFSYIETNKATGKVVIH  389 (392)
Q Consensus       372 ~A~~~l~~~~~~gKvvl~  389 (392)
                      ++|+.+.++...+|++++
T Consensus       306 ~~~~~~~~~~~~~~vvv~  323 (323)
T cd08241         306 EALRALADRKATGKVVLT  323 (323)
T ss_pred             HHHHHHHhCCCCCcEEeC
Confidence            999999988888898863

QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic

>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase

Probab=99.97  E-value=6.4e-31  Score=247.48  Aligned_cols=224  Identities=23%  Similarity=0.255  Sum_probs=176.6

Q ss_pred             cCCCceeEEEEEeCCCCC------CCCCCCEEEecccccc------------------cCC-------CCCCCcceeEEE
Q 016265          145 VPGYDVAGVVVKVGTQVK------EFKEGDEVYGDINEKA------------------LEG-------PKQFGSLAEYTA  193 (392)
Q Consensus       145 v~G~e~~G~V~~vG~~v~------~~~vGdrV~~~~~~~~------------------~~~-------~~~~G~~a~~~~  193 (392)
                      ++|||++|+|+++|++|+      +|++||||+......+                  ..|       ...+|+|+||++
T Consensus         1 v~GHE~~G~V~~vG~~v~~~~~~~~~~~GdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~g~~~~~~~~~~~G~~aey~~   80 (280)
T TIGR03366         1 VLGHEIVGEVVALRGGFTPADDGVPLRLGQRVVWSVTVPCGRCFRCRRGLPQKCDSLRKYGHEALDSGWPLSGGYAEHCH   80 (280)
T ss_pred             CCCcccceEEEEeCCCccccccCCCCCCCCEEEEcCCCCCCCChhhhCcCcccCCChhhcCcccccCCccccccceeeEE
Confidence            589999999999999999      8999999976421100                  011       113699999999


Q ss_pred             ecCC-ceeeCCCCCCHHhHhccchhHHHHHHHHHhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCe-EEEEeCCcccH
Q 016265          194 VEER-LLAPKPKNLDFVQAAGLPLAIETAYEGLERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGAS-RVAATSSTRNL  271 (392)
Q Consensus       194 v~~~-~~~~iP~~l~~~~aa~l~~~~~ta~~al~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~-vv~~~~~~~~~  271 (392)
                      +++. .++++|+++++++++.+++++.|+|+++++....+|++|+|+| +|++|++++|+||. .|++ +++++.+++|+
T Consensus        81 v~~~~~~~~lP~~~~~~~aa~l~~~~~ta~~al~~~~~~~g~~VlV~G-~G~vG~~~~~~ak~-~G~~~Vi~~~~~~~r~  158 (280)
T TIGR03366        81 LPAGTAIVPVPDDLPDAVAAPAGCATATVMAALEAAGDLKGRRVLVVG-AGMLGLTAAAAAAA-AGAARVVAADPSPDRR  158 (280)
T ss_pred             ecCCCcEEECCCCCCHHHhhHhhhHHHHHHHHHHhccCCCCCEEEEEC-CCHHHHHHHHHHHH-cCCCEEEEECCCHHHH
Confidence            9997 6999999999999999999999999999887778999999998 69999999999999 4987 66777789999


Q ss_pred             HHHHhcCCcEEEeCCCCc--cccC--CCCccEEEecCcc---HHHHHHhcccCCeEEEEcCCC--CCCce----------
Q 016265          272 EFLKSLGADLAIDYTKDN--FEDL--PEKFDVVYDAIGQ---CDRAVKAIKEGGTVVALTGAV--TPPGF----------  332 (392)
Q Consensus       272 ~~~~~~G~~~vi~~~~~~--~~~~--~~~~D~vid~~G~---~~~~~~~l~~~G~iv~~g~~~--~~~~~----------  332 (392)
                      ++++++|+++++++.+..  ..+.  ..++|++||++|.   ++.++++++++|+++.+|...  .+..+          
T Consensus       159 ~~a~~~Ga~~~i~~~~~~~~~~~~~~~~g~d~vid~~G~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~i~~~~~~~~~~  238 (280)
T TIGR03366       159 ELALSFGATALAEPEVLAERQGGLQNGRGVDVALEFSGATAAVRACLESLDVGGTAVLAGSVFPGGPVALDPEQVVRRWL  238 (280)
T ss_pred             HHHHHcCCcEecCchhhHHHHHHHhCCCCCCEEEECCCChHHHHHHHHHhcCCCEEEEeccCCCCCceeeCHHHHHhCCc
Confidence            999999999999875421  1111  3479999999983   689999999999999998642  11111          


Q ss_pred             EEE--EeecHHHHHHHHHHHHCC--CcccccCCCcccchhhH
Q 016265          333 RFV--VTSNGEVLKKLNPYLESG--KVKPIIDPKGPFPFSQV  370 (392)
Q Consensus       333 ~~~--~~~~~~~~~~~~~~l~~g--~l~~~~~~t~~~~l~~~  370 (392)
                      .+.  .....+.++++++++.++  +++...+++++||++|+
T Consensus       239 ~i~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~it~~~~l~~~  280 (280)
T TIGR03366       239 TIRGVHNYEPRHLDQAVRFLAANGQRFPFEELVGKPFPLADV  280 (280)
T ss_pred             EEEecCCCCHHHHHHHHHHHHhhCCCCCHHHHhhcccccccC
Confidence            111  122356789999999974  56655667899999874

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.

>cd08258 Zn_ADH4 Alcohol dehydrogenases of the MDR family

Probab=99.97  E-value=1.4e-29  Score=241.42  Aligned_cols=236  Identities=30%  Similarity=0.435  Sum_probs=192.3

Q ss_pred             eeEEEEcccCCcceEEEeccccCCCCCCCeEEEEEeEEecChHhHHhhcCCCCCCCCCCCCcCCCceeEEEEEeCCCCCC
Q 016265           84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKE  163 (392)
Q Consensus        84 mka~v~~~~~~~~~l~~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~~~p~v~G~e~~G~V~~vG~~v~~  163 (392)
                      ||+++.++.+ ...++++ +++.|.+.++||+||+.++++|++|++...|.+.  ....|.++|+|++|+|+++|++++.
T Consensus         1 ~~~~~~~~~~-~~~~~~~-~~~~p~~~~~~v~V~v~~~~l~~~d~~~~~g~~~--~~~~p~~~G~e~~G~V~~vG~~v~~   76 (306)
T cd08258           1 MKALVKTGPG-PGNVELR-EVPEPEPGPGEVLIKVAAAGICGSDLHIYKGDYD--PVETPVVLGHEFSGTIVEVGPDVEG   76 (306)
T ss_pred             CeeEEEecCC-CCceEEe-ecCCCCCCCCeEEEEEEEEEechhhHHHHcCCCC--cCCCCeeeccceEEEEEEECCCcCc
Confidence            6899987644 2448888 8999999999999999999999999998888652  2335778999999999999999999


Q ss_pred             CCCCCEEEecccccc-------------------cCCCCCCCcceeEEEecCCceeeCCCCCCHHhHhccchhHHHHHHH
Q 016265          164 FKEGDEVYGDINEKA-------------------LEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEG  224 (392)
Q Consensus       164 ~~vGdrV~~~~~~~~-------------------~~~~~~~G~~a~~~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~a  224 (392)
                      +++||+|++......                   ..+....|+|++|++++...++++|+++++++++ ++.+..++|++
T Consensus        77 ~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~lp~~~~~~~aa-~~~~~~~a~~~  155 (306)
T cd08258          77 WKVGDRVVSETTFSTCGRCPYCRRGDYNLCPHRKGIGTQADGGFAEYVLVPEESLHELPENLSLEAAA-LTEPLAVAVHA  155 (306)
T ss_pred             CCCCCEEEEccCcCCCCCCcchhCcCcccCCCCceeeecCCCceEEEEEcchHHeEECcCCCCHHHHH-hhchHHHHHHH
Confidence            999999998642100                   0011135899999999999999999999999887 77777899999


Q ss_pred             H-HhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEe--CCcccHHHHHhcCCcEEEeCCCCcccc------CCC
Q 016265          225 L-ERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAAT--SSTRNLEFLKSLGADLAIDYTKDNFED------LPE  295 (392)
Q Consensus       225 l-~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~--~~~~~~~~~~~~G~~~vi~~~~~~~~~------~~~  295 (392)
                      + ..+.+++|++|+|.| +|++|++++|+|+. .|++++++.  .++++.+.++++|++++ ++...++.+      ..+
T Consensus       156 l~~~~~~~~g~~vlI~g-~g~~g~~~~~la~~-~G~~v~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~l~~~~~~~  232 (306)
T cd08258         156 VAERSGIRPGDTVVVFG-PGPIGLLAAQVAKL-QGATVVVVGTEKDEVRLDVAKELGADAV-NGGEEDLAELVNEITDGD  232 (306)
T ss_pred             HHHhcCCCCCCEEEEEC-CCHHHHHHHHHHHH-cCCEEEEECCCCCHHHHHHHHHhCCccc-CCCcCCHHHHHHHHcCCC
Confidence            8 457889999999976 89999999999999 499987663  24557888899999888 776655422      135


Q ss_pred             CccEEEecCc---cHHHHHHhcccCCeEEEEcCCC
Q 016265          296 KFDVVYDAIG---QCDRAVKAIKEGGTVVALTGAV  327 (392)
Q Consensus       296 ~~D~vid~~G---~~~~~~~~l~~~G~iv~~g~~~  327 (392)
                      ++|++||++|   .+...+++|+++|+++.+|...
T Consensus       233 ~vd~vld~~g~~~~~~~~~~~l~~~G~~v~~g~~~  267 (306)
T cd08258         233 GADVVIECSGAVPALEQALELLRKGGRIVQVGIFG  267 (306)
T ss_pred             CCCEEEECCCChHHHHHHHHHhhcCCEEEEEcccC
Confidence            7999999996   3578899999999999998754

This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous

>cd05195 enoyl_red enoyl reductase of polyketide synthase

Probab=99.97  E-value=2.2e-29  Score=235.86  Aligned_cols=260  Identities=32%  Similarity=0.455  Sum_probs=215.8

Q ss_pred             CeEEEEEeEEecChHhHHhhcCCCCCCCCCCCCcCCCceeEEEEEeCCCCCCCCCCCEEEecccccccCCCCCCCcceeE
Q 016265          112 DQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKEFKEGDEVYGDINEKALEGPKQFGSLAEY  191 (392)
Q Consensus       112 ~eVlV~v~~~~i~~~D~~~~~g~~~~~~~~~p~v~G~e~~G~V~~vG~~v~~~~vGdrV~~~~~~~~~~~~~~~G~~a~~  191 (392)
                      +||+||+.++++|++|++...|.++    .+|.++|||++|+|+++|+++..+++||+|++..          .|+|++|
T Consensus         1 ~~v~i~v~~~~~~~~d~~~~~g~~~----~~~~~~g~e~~G~v~~~g~~~~~~~~Gd~V~~~~----------~g~~~~~   66 (293)
T cd05195           1 DEVEVEVKAAGLNFRDVLVALGLLP----GDETPLGLECSGIVTRVGSGVTGLKVGDRVMGLA----------PGAFATH   66 (293)
T ss_pred             CceEEEEEEEecCHHHHHHHhCCCC----CCCCccceeeeEEEEeecCCccCCCCCCEEEEEe----------cCcccce
Confidence            5899999999999999999887642    3578999999999999999999999999999864          4899999


Q ss_pred             EEecCCceeeCCCCCCHHhHhccchhHHHHHHHHH-hcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCccc
Q 016265          192 TAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLE-RTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRN  270 (392)
Q Consensus       192 ~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~al~-~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~  270 (392)
                      +.++.+.++++|+++++.+++.+++++.++|+++. ...+++|++|+|+|+.|++|++++|+|+. .|+++++++.++++
T Consensus        67 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~g~~vlv~g~~g~~g~~~~~~a~~-~g~~v~~~~~~~~~  145 (293)
T cd05195          67 VRVDARLVVKIPDSLSFEEAATLPVAYLTAYYALVDLARLQKGESVLIHAAAGGVGQAAIQLAQH-LGAEVFATVGSEEK  145 (293)
T ss_pred             EEechhheEeCCCCCCHHHHhhchHHHHHHHHHHHHHhccCCCCEEEEecCCCHHHHHHHHHHHH-cCCEEEEEeCCHHH
Confidence            99999999999999999999999999999999984 57899999999999999999999999999 59999999998899


Q ss_pred             HHHHHhcC--CcEEEeCCCCcccc----C--CCCccEEEecCcc--HHHHHHhcccCCeEEEEcCCCCC--Cc-------
Q 016265          271 LEFLKSLG--ADLAIDYTKDNFED----L--PEKFDVVYDAIGQ--CDRAVKAIKEGGTVVALTGAVTP--PG-------  331 (392)
Q Consensus       271 ~~~~~~~G--~~~vi~~~~~~~~~----~--~~~~D~vid~~G~--~~~~~~~l~~~G~iv~~g~~~~~--~~-------  331 (392)
                      .+.+++.|  ++.+++.....+.+    .  .+++|+++|++|.  .+.++++++++|+++.++.....  ..       
T Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~  225 (293)
T cd05195         146 REFLRELGGPVDHIFSSRDLSFADGILRATGGRGVDVVLNSLSGELLRASWRCLAPFGRFVEIGKRDILSNSKLGMRPFL  225 (293)
T ss_pred             HHHHHHhCCCcceEeecCchhHHHHHHHHhCCCCceEEEeCCCchHHHHHHHhcccCceEEEeeccccccCCccchhhhc
Confidence            99998888  78888876543322    1  3579999999984  68899999999999998754311  00       


Q ss_pred             --eEEEE-e----------ecHHHHHHHHHHHHCCCcccccCCCcccchhhHHHHHHHHHhCCCCeeEEE
Q 016265          332 --FRFVV-T----------SNGEVLKKLNPYLESGKVKPIIDPKGPFPFSQVVEAFSYIETNKATGKVVI  388 (392)
Q Consensus       332 --~~~~~-~----------~~~~~~~~~~~~l~~g~l~~~~~~t~~~~l~~~~~A~~~l~~~~~~gKvvl  388 (392)
                        ..+.. .          ...+.+.+++++++++++++.  .++.|+++++.++|+.+.++...||+++
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~~ivv  293 (293)
T cd05195         226 RNVSFSSVDLDQLARERPELLRELLREVLELLEAGVLKPL--PPTVVPSASEIDAFRLMQSGKHIGKVVL  293 (293)
T ss_pred             cCCeEEEEeHHHHhhhChHHHHHHHHHHHHHHHCCCcccC--CCeeechhhHHHHHHHHhcCCCCceecC
Confidence              11110 0          012356788889999988754  4578999999999999999888788864

Putative enoyl reductase of polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase

>smart00829 PKS_ER Enoylreductase

Probab=99.97  E-value=7.2e-29  Score=232.29  Aligned_cols=255  Identities=33%  Similarity=0.511  Sum_probs=211.5

Q ss_pred             EEEeEEecChHhHHhhcCCCCCCCCCCCCcCCCceeEEEEEeCCCCCCCCCCCEEEecccccccCCCCCCCcceeEEEec
Q 016265          116 IKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVE  195 (392)
Q Consensus       116 V~v~~~~i~~~D~~~~~g~~~~~~~~~p~v~G~e~~G~V~~vG~~v~~~~vGdrV~~~~~~~~~~~~~~~G~~a~~~~v~  195 (392)
                      ||+.++++|++|++.+.|.++     .|.++|||++|+|+++|+++..+++||+|++..          .|+|++|+.++
T Consensus         2 i~v~~~~i~~~d~~~~~g~~~-----~~~~~g~e~~G~v~~~G~~~~~~~~Gd~V~~~~----------~g~~~~~~~~~   66 (288)
T smart00829        2 VEVRAAGLNFRDVLIALGLLP-----GEAVLGGECAGVVTRVGPGVTGLAVGDRVMGLA----------PGSFATYVRTD   66 (288)
T ss_pred             eeEEEEecCHHHHHHhcCCCC-----CCCCCCceeEEEEEeeCCCCcCCCCCCEEEEEc----------CCceeeEEEcc
Confidence            789999999999999887653     357899999999999999999999999999864          38999999999


Q ss_pred             CCceeeCCCCCCHHhHhccchhHHHHHHHH-HhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHH
Q 016265          196 ERLLAPKPKNLDFVQAAGLPLAIETAYEGL-ERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFL  274 (392)
Q Consensus       196 ~~~~~~iP~~l~~~~aa~l~~~~~ta~~al-~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~  274 (392)
                      .+.++++|+++++++++.+++++.++|+++ +...+.+|++|+|+|+.|++|++++++|+. +|++++++++++++++++
T Consensus        67 ~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~g~~vlv~g~~~~~g~~~~~~a~~-~g~~v~~~~~~~~~~~~~  145 (288)
T smart00829       67 ARLVVPIPDGLSFEEAATVPVVFLTAYYALVDLARLRPGESVLIHAAAGGVGQAAIQLAQH-LGAEVFATAGSPEKRDFL  145 (288)
T ss_pred             HHHeEECCCCCCHHHHHhchHHHHHHHHHHHHHhCCCCCCEEEEecCCcHHHHHHHHHHHH-cCCEEEEEeCCHHHHHHH
Confidence            999999999999999999999999999998 567899999999999999999999999998 599999999899999999


Q ss_pred             HhcCC--cEEEeCCCCcccc----C--CCCccEEEecCc--cHHHHHHhcccCCeEEEEcCCCC--CC---------ceE
Q 016265          275 KSLGA--DLAIDYTKDNFED----L--PEKFDVVYDAIG--QCDRAVKAIKEGGTVVALTGAVT--PP---------GFR  333 (392)
Q Consensus       275 ~~~G~--~~vi~~~~~~~~~----~--~~~~D~vid~~G--~~~~~~~~l~~~G~iv~~g~~~~--~~---------~~~  333 (392)
                      +++|+  +.++++...++.+    .  .+++|+++|++|  ....++++++++|+++.++....  ..         ...
T Consensus       146 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~  225 (288)
T smart00829      146 RELGIPDDHIFSSRDLSFADEILRATGGRGVDVVLNSLAGEFLDASLRCLAPGGRFVEIGKRDIRDNSQLGMAPFRRNVS  225 (288)
T ss_pred             HHcCCChhheeeCCCccHHHHHHHHhCCCCcEEEEeCCCHHHHHHHHHhccCCcEEEEEcCcCCccccccchhhhcCCce
Confidence            99998  7888876554422    1  347999999987  35788999999999999875421  00         111


Q ss_pred             EEEe----------ecHHHHHHHHHHHHCCCcccccCCCcccchhhHHHHHHHHHhCCCCeeEEE
Q 016265          334 FVVT----------SNGEVLKKLNPYLESGKVKPIIDPKGPFPFSQVVEAFSYIETNKATGKVVI  388 (392)
Q Consensus       334 ~~~~----------~~~~~~~~~~~~l~~g~l~~~~~~t~~~~l~~~~~A~~~l~~~~~~gKvvl  388 (392)
                      +...          ...+.+.++++++.++++++.  ..+.|++++++++++.+..++..+|+++
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ivv  288 (288)
T smart00829      226 YHAVDLDALEEGPDRIRELLAEVLELFAEGVLRPL--PVTVFPISDVEDAFRYMQQGKHIGKVVL  288 (288)
T ss_pred             EEEEEHHHhhcChHHHHHHHHHHHHHHHCCCccCc--CceEEcHHHHHHHHHHHhcCCCcceEeC
Confidence            1110          012346778889999988764  4578999999999999998877788764

Enoylreductase in Polyketide synthases.

>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.96  E-value=1.6e-27  Score=221.67  Aligned_cols=212  Identities=39%  Similarity=0.563  Sum_probs=179.7

Q ss_pred             eEEEEEeEEecChHhHHhhcCCCCCCCCCCCCcCCCceeEEEEEeCCCCCCCCCCCEEEeccccc--------------c
Q 016265          113 QVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKEFKEGDEVYGDINEK--------------A  178 (392)
Q Consensus       113 eVlV~v~~~~i~~~D~~~~~g~~~~~~~~~p~v~G~e~~G~V~~vG~~v~~~~vGdrV~~~~~~~--------------~  178 (392)
                      ||+|++.++++|+.|++.+.|..+ ....+|.++|||++|+|+++|++++.|++||+|++.....              .
T Consensus         1 ~v~i~v~~~~i~~~d~~~~~g~~~-~~~~~~~~~G~e~~G~v~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~   79 (271)
T cd05188           1 EVLVRVEAAGLCGTDLHIRRGGYP-PPPKLPLILGHEGAGVVVEVGPGVTGVKVGDRVVVLPNLGCGTCELCRELCPGGG   79 (271)
T ss_pred             CeEEEEEEEEecchhHHHHcCCCC-cCCCCCcccccccEEEEEEECCCCCcCCCCCEEEEcCCCCCCCCHHHHhhCCCCC
Confidence            689999999999999999988754 2234578999999999999999999999999999865311              1


Q ss_pred             cCCCCCCCcceeEEEecCCceeeCCCCCCHHhHhccchhHHHHHHHHHhcC-CCCCCeEEEEcCCCcHHHHHHHHHHHhc
Q 016265          179 LEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLERTG-FSAGKSILVLNGSGGVGSLVIQLAKQVF  257 (392)
Q Consensus       179 ~~~~~~~G~~a~~~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~al~~~~-~~~g~~VlI~Ga~G~vG~~aiqlak~~~  257 (392)
                      ..+....|+|++|+.++.+.++++|+++++++++.+++++.|||+++.... +++|++|+|+|+++ +|++++++++. .
T Consensus        80 ~~~~~~~g~~~~~~~v~~~~~~~ip~~~~~~~a~~~~~~~~~a~~~l~~~~~~~~~~~vli~g~~~-~G~~~~~~a~~-~  157 (271)
T cd05188          80 ILGEGLDGGFAEYVVVPADNLVPLPDGLSLEEAALLPEPLATAYHALRRAGVLKPGDTVLVLGAGG-VGLLAAQLAKA-A  157 (271)
T ss_pred             EeccccCCcceEEEEechHHeEECCCCCCHHHhhHhcCHHHHHHHHHHhccCCCCCCEEEEECCCH-HHHHHHHHHHH-c
Confidence            122234699999999999999999999999999999999999999997654 58999999999666 99999999999 4


Q ss_pred             CCeEEEEeCCcccHHHHHhcCCcEEEeCCCCcccc-----CCCCccEEEecCcc---HHHHHHhcccCCeEEEEcCCC
Q 016265          258 GASRVAATSSTRNLEFLKSLGADLAIDYTKDNFED-----LPEKFDVVYDAIGQ---CDRAVKAIKEGGTVVALTGAV  327 (392)
Q Consensus       258 G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~~-----~~~~~D~vid~~G~---~~~~~~~l~~~G~iv~~g~~~  327 (392)
                      |.++++++.++++.+.++++|+++++++......+     ..+++|++||++|.   ...++++++++|+++.++...
T Consensus       158 g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~~~~~~~~~~l~~~G~~v~~~~~~  235 (271)
T cd05188         158 GARVIVTDRSDEKLELAKELGADHVIDYKEEDLEEELRLTGGGGADVVIDAVGGPETLAQALRLLRPGGRIVVVGGTS  235 (271)
T ss_pred             CCeEEEEcCCHHHHHHHHHhCCceeccCCcCCHHHHHHHhcCCCCCEEEECCCCHHHHHHHHHhcccCCEEEEEccCC
Confidence            99999999999999999999999988876654432     24579999999885   478899999999999998654

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro

>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members

Probab=99.95  E-value=2.2e-26  Score=215.86  Aligned_cols=230  Identities=30%  Similarity=0.388  Sum_probs=186.8

Q ss_pred             CCCCCcCCCceeEEEEEeCCCCCCCCCCCEEEecccccccCCCCCCCcceeEEEecCCceeeCCCCCCHHhHhccchhHH
Q 016265          140 SPLPTVPGYDVAGVVVKVGTQVKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIE  219 (392)
Q Consensus       140 ~~~p~v~G~e~~G~V~~vG~~v~~~~vGdrV~~~~~~~~~~~~~~~G~~a~~~~v~~~~~~~iP~~l~~~~aa~l~~~~~  219 (392)
                      .++|.++|||++|+|+++|++++++++||+|++.            +.|++|+.++.+.++++|+++++++++.+ +++.
T Consensus        18 ~~~p~v~g~e~~G~V~~vG~~v~~~~~Gd~V~~~------------~~~~~~~~v~~~~~~~ip~~l~~~~aa~~-~~~~   84 (277)
T cd08255          18 LPLPLPPGYSSVGRVVEVGSGVTGFKPGDRVFCF------------GPHAERVVVPANLLVPLPDGLPPERAALT-ALAA   84 (277)
T ss_pred             CcCCcccCcceeEEEEEeCCCCCCCCCCCEEEec------------CCcceEEEcCHHHeeECcCCCCHHHhHHH-HHHH
Confidence            4578999999999999999999999999999984            46999999999999999999999999888 7899


Q ss_pred             HHHHHHHhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCe-EEEEeCCcccHHHHHhcC-CcEEEeCCCCccccCCCCc
Q 016265          220 TAYEGLERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGAS-RVAATSSTRNLEFLKSLG-ADLAIDYTKDNFEDLPEKF  297 (392)
Q Consensus       220 ta~~al~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~-vv~~~~~~~~~~~~~~~G-~~~vi~~~~~~~~~~~~~~  297 (392)
                      |||+++...++++|++|+|+| +|++|++++++|+.+ |++ +++++++++++++++++| ++.+++.....  ....++
T Consensus        85 ta~~~~~~~~~~~g~~vlI~g-~g~vg~~~i~~a~~~-g~~~vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~--~~~~~~  160 (277)
T cd08255          85 TALNGVRDAEPRLGERVAVVG-LGLVGLLAAQLAKAA-GAREVVGVDPDAARRELAEALGPADPVAADTADE--IGGRGA  160 (277)
T ss_pred             HHHHHHHhcCCCCCCEEEEEC-CCHHHHHHHHHHHHc-CCCcEEEECCCHHHHHHHHHcCCCccccccchhh--hcCCCC
Confidence            999999888999999999997 799999999999994 998 888888999999999999 66665543211  123479


Q ss_pred             cEEEecCc---cHHHHHHhcccCCeEEEEcCCCCC----------CceEEEE---e-----------ecHHHHHHHHHHH
Q 016265          298 DVVYDAIG---QCDRAVKAIKEGGTVVALTGAVTP----------PGFRFVV---T-----------SNGEVLKKLNPYL  350 (392)
Q Consensus       298 D~vid~~G---~~~~~~~~l~~~G~iv~~g~~~~~----------~~~~~~~---~-----------~~~~~~~~~~~~l  350 (392)
                      |++||++|   ....++++++++|+++.+|.....          ....+..   .           ...+.++++++++
T Consensus       161 d~vl~~~~~~~~~~~~~~~l~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  240 (277)
T cd08255         161 DVVIEASGSPSALETALRLLRDRGRVVLVGWYGLKPLLLGEEFHFKRLPIRSSQVYGIGRYDRPRRWTEARNLEEALDLL  240 (277)
T ss_pred             CEEEEccCChHHHHHHHHHhcCCcEEEEEeccCCCccccHHHHHhccCeEEeecccccccccccccccccccHHHHHHHH
Confidence            99999977   357899999999999998754321          0001110   0           0124678899999


Q ss_pred             HCCCcccccCCCcccchhhHHHHHHHHHhC-CCCeeEEE
Q 016265          351 ESGKVKPIIDPKGPFPFSQVVEAFSYIETN-KATGKVVI  388 (392)
Q Consensus       351 ~~g~l~~~~~~t~~~~l~~~~~A~~~l~~~-~~~gKvvl  388 (392)
                      .++.+++.  +.+.|+++++.+||+.+.++ ....|+++
T Consensus       241 ~~~~l~~~--~~~~~~~~~~~~a~~~~~~~~~~~~k~~~  277 (277)
T cd08255         241 AEGRLEAL--ITHRVPFEDAPEAYRLLFEDPPECLKVVL  277 (277)
T ss_pred             HcCCcccc--ccCccCHHHHHHHHHHHHcCCccceeeeC
Confidence            99998765  46789999999999999877 23367653

This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD

>KOG1196 consensus Predicted NAD-dependent oxidoreductase [General function prediction only]

Probab=99.95  E-value=3.9e-25  Score=199.22  Aligned_cols=267  Identities=24%  Similarity=0.349  Sum_probs=206.2

Q ss_pred             CCCCCCeEEEEEeEEecChHhHHhhcCCCCCCCCCCCCcCC----CceeEEEEEeCCCCCCCCCCCEEEecccccccCCC
Q 016265          107 PQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPG----YDVAGVVVKVGTQVKEFKEGDEVYGDINEKALEGP  182 (392)
Q Consensus       107 p~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~~~p~v~G----~e~~G~V~~vG~~v~~~~vGdrV~~~~~~~~~~~~  182 (392)
                      .++++++|+||..|.+.+|.-...+.-..+ ...-.|..+|    ..++|+|++  ++.+++++||.|.+..        
T Consensus        33 ~~~~s~~vlvknlYLS~DPymR~rM~~~~~-~~y~~~~~~G~pi~g~GV~kVi~--S~~~~~~~GD~v~g~~--------  101 (343)
T KOG1196|consen   33 VPLGSGEVLVKNLYLSCDPYMRIRMGKPDP-SDYAPPYEPGKPIDGFGVAKVID--SGHPNYKKGDLVWGIV--------  101 (343)
T ss_pred             CCCCCccEEeEeeeecCCHHHHhhccCCCc-ccccCcccCCcEecCCceEEEEe--cCCCCCCcCceEEEec--------
Confidence            456899999999999999986555432221 1111223333    267899998  4567899999999963        


Q ss_pred             CCCCcceeEEEecCCc--eeeCC--CCCCHHhHhc-cchhHHHHHHHH-HhcCCCCCCeEEEEcCCCcHHHHHHHHHHHh
Q 016265          183 KQFGSLAEYTAVEERL--LAPKP--KNLDFVQAAG-LPLAIETAYEGL-ERTGFSAGKSILVLNGSGGVGSLVIQLAKQV  256 (392)
Q Consensus       183 ~~~G~~a~~~~v~~~~--~~~iP--~~l~~~~aa~-l~~~~~ta~~al-~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~  256 (392)
                          +|.||.+++...  .++++  .+.++..... +.++.+|||-++ +....++|++|+|.||+|++|+++.|+||.+
T Consensus       102 ----gWeeysii~~~~~~~~ki~~~~~~pLs~ylg~lGm~glTAy~Gf~ei~~pk~geTv~VSaAsGAvGql~GQ~Ak~~  177 (343)
T KOG1196|consen  102 ----GWEEYSVITPNDLEHFKIQHPTDVPLSYYLGLLGMPGLTAYAGFYEICSPKKGETVFVSAASGAVGQLVGQFAKLM  177 (343)
T ss_pred             ----cceEEEEecCcchhcccCCCCCccCHhhhhhccCCchhHHHHHHHHhcCCCCCCEEEEeeccchhHHHHHHHHHhc
Confidence                699999997643  34443  4555555443 478889999999 5788999999999999999999999999995


Q ss_pred             cCCeEEEEeCCcccHHHHH-hcCCcEEEeCCCC-cccc-----CCCCccEEEecCcc--HHHHHHhcccCCeEEEEcCCC
Q 016265          257 FGASRVAATSSTRNLEFLK-SLGADLAIDYTKD-NFED-----LPEKFDVVYDAIGQ--CDRAVKAIKEGGTVVALTGAV  327 (392)
Q Consensus       257 ~G~~vv~~~~~~~~~~~~~-~~G~~~vi~~~~~-~~~~-----~~~~~D~vid~~G~--~~~~~~~l~~~G~iv~~g~~~  327 (392)
                       |++||....+++|.++++ ++|.|.++||.++ +..+     .++|+|+.||.+|+  ++..+..|+..||++.+|.-+
T Consensus       178 -Gc~VVGsaGS~EKv~ll~~~~G~d~afNYK~e~~~~~aL~r~~P~GIDiYfeNVGG~~lDavl~nM~~~gri~~CG~IS  256 (343)
T KOG1196|consen  178 -GCYVVGSAGSKEKVDLLKTKFGFDDAFNYKEESDLSAALKRCFPEGIDIYFENVGGKMLDAVLLNMNLHGRIAVCGMIS  256 (343)
T ss_pred             -CCEEEEecCChhhhhhhHhccCCccceeccCccCHHHHHHHhCCCcceEEEeccCcHHHHHHHHhhhhccceEeeeeeh
Confidence             999999999999999997 6799999999887 4433     26799999999994  699999999999999998543


Q ss_pred             -----CCCc---eEE-----------EE----eecHHHHHHHHHHHHCCCcccccCCCcccchhhHHHHHHHHHhCCCCe
Q 016265          328 -----TPPG---FRF-----------VV----TSNGEVLKKLNPYLESGKVKPIIDPKGPFPFSQVVEAFSYIETNKATG  384 (392)
Q Consensus       328 -----~~~~---~~~-----------~~----~~~~~~~~~~~~~l~~g~l~~~~~~t~~~~l~~~~~A~~~l~~~~~~g  384 (392)
                           .+..   +..           ..    ......++.+.+++++|+|+...++  .-.|+..+.||.-|.+|+..|
T Consensus       257 qYN~~~~~~~~~l~~ii~Kr~~iqgflv~d~~d~~~k~ld~l~~~ikegKI~y~edi--~~Glen~P~A~vglf~GkNvG  334 (343)
T KOG1196|consen  257 QYNLENPEGLHNLSTIIYKRIRIQGFLVSDYLDKYPKFLDFLLPYIKEGKITYVEDI--ADGLENGPSALVGLFHGKNVG  334 (343)
T ss_pred             hccccCCccccchhhheeeeEEeeeEEeechhhhhHHHHHHHHHHHhcCceEEehhH--HHHHhccHHHHHHHhccCccc
Confidence                 1111   111           10    1125667889999999999987554  346999999999999999999


Q ss_pred             eEEEEeC
Q 016265          385 KVVIHPI  391 (392)
Q Consensus       385 Kvvl~~~  391 (392)
                      |-++++.
T Consensus       335 Kqiv~va  341 (343)
T KOG1196|consen  335 KQLVKVA  341 (343)
T ss_pred             ceEEEee
Confidence            9998764

>KOG1202 consensus Animal-type fatty acid synthase and related proteins [Lipid transport and metabolism]

Probab=99.94  E-value=3.5e-26  Score=233.22  Aligned_cols=276  Identities=24%  Similarity=0.348  Sum_probs=226.8

Q ss_pred             CCcceEEEeccccCC---CCCCCeEEEEEeEEecChHhHHhhcCCCCCCC-----CCCCCcCCCceeEEEEEeCCCCCCC
Q 016265           93 GGVDVLKFDEKVTVP---QVKEDQVLIKVVAAALNPVDGKRRQGKFKATD-----SPLPTVPGYDVAGVVVKVGTQVKEF  164 (392)
Q Consensus        93 ~~~~~l~~~~~~~~p---~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~-----~~~p~v~G~e~~G~V~~vG~~v~~~  164 (392)
                      |+...++|. +.+..   +..++.=+.-|.|+.||..|+++..|+.+...     .....++|-|++|+-          
T Consensus      1424 GDlsSlrWi-es~~~~a~~~~~~~e~CtVYYAplNFRDiMLasGkL~~DAiPG~~a~qdclLGmEFsGRd---------- 1492 (2376)
T KOG1202|consen 1424 GDLSSLRWI-ESPLRHAQPTCPGLELCTVYYAPLNFRDIMLASGKLSPDAIPGDLASQDCLLGMEFSGRD---------- 1492 (2376)
T ss_pred             ccccceeee-ecchhhcCCCCCCCceeEEEeccccHHHHHHhcCCCCcccCCCccchhhheeceeecccc----------
Confidence            555678888 66654   34678888999999999999999999975321     233578999999873          


Q ss_pred             CCCCEEEecccccccCCCCCCCcceeEEEecCCceeeCCCCCCHHhHhccchhHHHHHHHH-HhcCCCCCCeEEEEcCCC
Q 016265          165 KEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGL-ERTGFSAGKSILVLNGSG  243 (392)
Q Consensus       165 ~vGdrV~~~~~~~~~~~~~~~G~~a~~~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~al-~~~~~~~g~~VlI~Ga~G  243 (392)
                      +-|.||++...         .-++++-+.++.+.+|.+|++..+++|+..|+.+.|+|||| .+...++||++||++|+|
T Consensus      1493 ~~GrRvM~mvp---------AksLATt~l~~rd~lWevP~~WTleeAstVP~VYsTaYYALVvRG~mkkGekiLIHaGsG 1563 (2376)
T KOG1202|consen 1493 ASGRRVMGMVP---------AKSLATTVLASRDFLWEVPSKWTLEEASTVPVVYSTAYYALVVRGQMKKGEKILIHAGSG 1563 (2376)
T ss_pred             CCCcEEEEeee---------hhhhhhhhhcchhhhhhCCcccchhhcccCceEeeeehhhhhhhccccCCcEEEEecCCC
Confidence            46999999875         46789999999999999999999999999999999999999 578899999999999999


Q ss_pred             cHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHh----cCCcEEEeCCCCccccC------CCCccEEEecCc--cHHHHH
Q 016265          244 GVGSLVIQLAKQVFGASRVAATSSTRNLEFLKS----LGADLAIDYTKDNFEDL------PEKFDVVYDAIG--QCDRAV  311 (392)
Q Consensus       244 ~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~----~G~~~vi~~~~~~~~~~------~~~~D~vid~~G--~~~~~~  311 (392)
                      ++|++||.+|.+ .|++|+-++.+.+|++++.+    +-..++-|+++.+|+..      ++|+|+|++...  -++..+
T Consensus      1564 GVGQAAIaiALa-~G~~VFTTVGSaEKRefL~~rFPqLqe~~~~NSRdtsFEq~vl~~T~GrGVdlVLNSLaeEkLQASi 1642 (2376)
T KOG1202|consen 1564 GVGQAAIAIALA-HGCTVFTTVGSAEKREFLLKRFPQLQETNFANSRDTSFEQHVLWHTKGRGVDLVLNSLAEEKLQASI 1642 (2376)
T ss_pred             chhHHHHHHHHH-cCCEEEEecCcHHHHHHHHHhchhhhhhcccccccccHHHHHHHHhcCCCeeeehhhhhHHHHHHHH
Confidence            999999999998 59999999999999999864    23566677888887663      679999999977  478999


Q ss_pred             HhcccCCeEEEEcCCCCCC----ce--------------EEEEeecHHHHHHHHHHHHCCC----cccccCCCcccchhh
Q 016265          312 KAIKEGGTVVALTGAVTPP----GF--------------RFVVTSNGEVLKKLNPYLESGK----VKPIIDPKGPFPFSQ  369 (392)
Q Consensus       312 ~~l~~~G~iv~~g~~~~~~----~~--------------~~~~~~~~~~~~~~~~~l~~g~----l~~~~~~t~~~~l~~  369 (392)
                      +||+-.|||..+|-.....    .+              +.++....+++.++..++++|.    ++|  +++++|+-.+
T Consensus      1643 RCLa~~GRFLEIGKfDLSqNspLGMavfLkNvsfHGiLLDsvmege~e~~~ev~~Lv~eGIksGvV~P--L~ttvF~~~q 1720 (2376)
T KOG1202|consen 1643 RCLALHGRFLEIGKFDLSQNSPLGMAVFLKNVSFHGILLDSVMEGEEEMWREVAALVAEGIKSGVVRP--LPTTVFHGQQ 1720 (2376)
T ss_pred             HHHHhcCeeeeecceecccCCcchhhhhhcccceeeeehhhhhcCcHHHHHHHHHHHHhhhccCceec--cccccccHHH
Confidence            9999999999998654221    11              1123445677888888877654    444  4689999999


Q ss_pred             HHHHHHHHHhCCCCeeEEEEeC
Q 016265          370 VVEAFSYIETNKATGKVVIHPI  391 (392)
Q Consensus       370 ~~~A~~~l~~~~~~gKvvl~~~  391 (392)
                      +++||+.|.+|+++||+|++..
T Consensus      1721 vE~AFRfMasGKHIGKVvikvr 1742 (2376)
T KOG1202|consen 1721 VEDAFRFMASGKHIGKVVIKVR 1742 (2376)
T ss_pred             HHHHHHHHhccCccceEEEEEc
Confidence            9999999999999999999864

>PF08240 ADH_N: Alcohol dehydrogenase GroES-like domain; InterPro: IPR013154 This is the catalytic domain of alcohol dehydrogenases (1

Probab=99.76  E-value=4.2e-18  Score=137.13  Aligned_cols=91  Identities=36%  Similarity=0.448  Sum_probs=74.0

Q ss_pred             CCeEEEEEeEEecChHhHHhhcCCCCCCCCCCCCcCCCceeEEEEEeCCCCCCCCCCCEEEecccc--------------
Q 016265          111 EDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKEFKEGDEVYGDINE--------------  176 (392)
Q Consensus       111 ~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~~~p~v~G~e~~G~V~~vG~~v~~~~vGdrV~~~~~~--------------  176 (392)
                      |+|||||+.++|||++|++.+.|.. .....+|.++|||++|+|+++|++|++|++||||+.....              
T Consensus         1 P~eVlVkv~a~gic~~D~~~~~g~~-~~~~~~p~i~GhE~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~   79 (109)
T PF08240_consen    1 PGEVLVKVRAAGICGSDLHIREGGP-PPPPKFPLILGHEGVGVVVAVGPGVTDFKVGDRVVVSPNIGCGECEYCLSGRPN   79 (109)
T ss_dssp             TTEEEEEEEEEEE-HHHHHHHTTSS-SSTSSSSEES-SEEEEEEEEESTTTTSSGTT-EEEEESEEETSSSHHHHTTTGG
T ss_pred             CCEEEEEEEEeeeCHHHHHHHhhcc-ccCCCCCcccccceeeeeeeeccccccccccceeeeecccCccCchhhcCCccc
Confidence            6899999999999999999999852 2346689999999999999999999999999999875431              


Q ss_pred             ----cccCCCCCCCcceeEEEecCCceeeC
Q 016265          177 ----KALEGPKQFGSLAEYTAVEERLLAPK  202 (392)
Q Consensus       177 ----~~~~~~~~~G~~a~~~~v~~~~~~~i  202 (392)
                          ....+...+|+|+||+++++++++++
T Consensus        80 ~c~~~~~~g~~~~G~~aey~~v~~~~~~~v  109 (109)
T PF08240_consen   80 LCPNPEVLGLGLDGGFAEYVVVPARNLVPV  109 (109)
T ss_dssp             GTTTBEETTTSSTCSSBSEEEEEGGGEEEE
T ss_pred             cCCCCCEeEcCCCCcccCeEEEehHHEEEC
Confidence                11245557899999999999999875

1.1.1 from EC). Many of them contain an inserted zinc binding domain. This domain has a GroES-like structure; a name derived from the superfamily of proteins with a GroES fold. Proteins with a GroES fold structure have a highly conserved hydrophobic core and a glycyl-aspartate dipeptide which is thought to maintain the fold [, ].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1YKF_D 2NVB_A 3FSR_D 1BXZ_B 3FTN_A 3MEQ_D 3UOG_B 3HZZ_B 4DVJ_A 1P0F_A ....

>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1

Probab=99.43  E-value=9.3e-13  Score=109.11  Aligned_cols=83  Identities=41%  Similarity=0.635  Sum_probs=74.1

Q ss_pred             cHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCCccccC------CCCccEEEecCc---cHHHHHHhc
Q 016265          244 GVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFEDL------PEKFDVVYDAIG---QCDRAVKAI  314 (392)
Q Consensus       244 ~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~~~------~~~~D~vid~~G---~~~~~~~~l  314 (392)
                      ++|++++|+||+. |+++++++++++|+++++++|+++++++++.++.+.      .+++|+||||+|   .++.+++++
T Consensus         1 ~vG~~a~q~ak~~-G~~vi~~~~~~~k~~~~~~~Ga~~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g~~~~~~~~~~~l   79 (130)
T PF00107_consen    1 GVGLMAIQLAKAM-GAKVIATDRSEEKLELAKELGADHVIDYSDDDFVEQIRELTGGRGVDVVIDCVGSGDTLQEAIKLL   79 (130)
T ss_dssp             HHHHHHHHHHHHT-TSEEEEEESSHHHHHHHHHTTESEEEETTTSSHHHHHHHHTTTSSEEEEEESSSSHHHHHHHHHHE
T ss_pred             ChHHHHHHHHHHc-CCEEEEEECCHHHHHHHHhhcccccccccccccccccccccccccceEEEEecCcHHHHHHHHHHh
Confidence            5899999999995 899999999999999999999999999988865432      247999999999   368999999


Q ss_pred             ccCCeEEEEcCCC
Q 016265          315 KEGGTVVALTGAV  327 (392)
Q Consensus       315 ~~~G~iv~~g~~~  327 (392)
                      +++|+++.+|...
T Consensus        80 ~~~G~~v~vg~~~   92 (130)
T PF00107_consen   80 RPGGRIVVVGVYG   92 (130)
T ss_dssp             EEEEEEEEESSTS
T ss_pred             ccCCEEEEEEccC
Confidence            9999999999876

1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....

>PF13602 ADH_zinc_N_2: Zinc-binding dehydrogenase; PDB: 3TQH_A 2VN8_A 3GOH_A 4A27_A

Probab=99.31  E-value=1.3e-12  Score=107.83  Aligned_cols=108  Identities=38%  Similarity=0.623  Sum_probs=75.5

Q ss_pred             cCCcEEEeCCCCccccCCCCccEEEecCc--c---HHHHHHhcccCCeEEEEcCC-C------CCCceEEE--E--ee--
Q 016265          277 LGADLAIDYTKDNFEDLPEKFDVVYDAIG--Q---CDRAVKAIKEGGTVVALTGA-V------TPPGFRFV--V--TS--  338 (392)
Q Consensus       277 ~G~~~vi~~~~~~~~~~~~~~D~vid~~G--~---~~~~~~~l~~~G~iv~~g~~-~------~~~~~~~~--~--~~--  338 (392)
                      +||++++||+..++ ...+++|+|||++|  .   +..++++| ++|+++.++.. .      ....+...  .  ..  
T Consensus         1 LGAd~vidy~~~~~-~~~~~~D~ViD~~g~~~~~~~~~~~~~l-~~G~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (127)
T PF13602_consen    1 LGADEVIDYRDTDF-AGPGGVDVVIDTVGQTGESLLDASRKLL-PGGRVVSIGGDLPSFARRLKGRSIRYSFLFSVDPNA   78 (127)
T ss_dssp             CT-SEEEETTCSHH-HTTS-EEEEEESS-CCHHHCGGGCCCTE-EEEEEEEE-SHHHHHHHHHHCHHCEEECCC-H--HH
T ss_pred             CCcCEEecCCCccc-cCCCCceEEEECCCCccHHHHHHHHHHC-CCCEEEEECCcccchhhhhcccceEEEEEEecCCCc
Confidence            69999999998777 44679999999999  3   24555677 99999999851 1      11122222  1  11  


Q ss_pred             -cHHHHHHHHHHHHCCCcccccCCCcccchhhHHHHHHHHHhCCCCeeEEE
Q 016265          339 -NGEVLKKLNPYLESGKVKPIIDPKGPFPFSQVVEAFSYIETNKATGKVVI  388 (392)
Q Consensus       339 -~~~~~~~~~~~l~~g~l~~~~~~t~~~~l~~~~~A~~~l~~~~~~gKvvl  388 (392)
                       ..+.++++.+++++|++++.+.  .+|||+++.+|++.+++++..||+||
T Consensus        79 ~~~~~l~~l~~l~~~G~l~~~i~--~~f~l~~~~~A~~~l~~~~~~GKvVl  127 (127)
T PF13602_consen   79 IRAEALEELAELVAEGKLKPPID--RVFPLEEAPEAHERLESGHARGKVVL  127 (127)
T ss_dssp             HHHHHHHHHHHHHHTTSS---EE--EEEEGGGHHHHHHHHHCT--SSEEEE
T ss_pred             hHHHHHHHHHHHHHCCCeEEeec--cEECHHHHHHHHHHHHhCCCCCeEeC
Confidence             3456999999999999999854  67999999999999999999999996

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=99.26  E-value=8.5e-11  Score=114.94  Aligned_cols=162  Identities=19%  Similarity=0.193  Sum_probs=119.1

Q ss_pred             HHHHHHh-cC-CCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCCccccCCCCcc
Q 016265          221 AYEGLER-TG-FSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFEDLPEKFD  298 (392)
Q Consensus       221 a~~al~~-~~-~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~~~~~~~D  298 (392)
                      .+.++.+ .+ ..+|++|+|+| .|.+|+.+++.++. +|++|++++.++.|++.++.+|++.+ +.     .+..+++|
T Consensus       188 ~~~~i~r~t~~~l~GktVvViG-~G~IG~~va~~ak~-~Ga~ViV~d~d~~R~~~A~~~G~~~~-~~-----~e~v~~aD  259 (413)
T cd00401         188 LIDGIKRATDVMIAGKVAVVAG-YGDVGKGCAQSLRG-QGARVIVTEVDPICALQAAMEGYEVM-TM-----EEAVKEGD  259 (413)
T ss_pred             hHHHHHHhcCCCCCCCEEEEEC-CCHHHHHHHHHHHH-CCCEEEEEECChhhHHHHHhcCCEEc-cH-----HHHHcCCC
Confidence            4555543 23 46899999998 99999999999998 59999998899999999999998543 21     22335789


Q ss_pred             EEEecCcc---HHH-HHHhcccCCeEEEEcCCCCCCce--------EEE--EeecHH-HHH--HHHHHHHCCCc-ccccC
Q 016265          299 VVYDAIGQ---CDR-AVKAIKEGGTVVALTGAVTPPGF--------RFV--VTSNGE-VLK--KLNPYLESGKV-KPIID  360 (392)
Q Consensus       299 ~vid~~G~---~~~-~~~~l~~~G~iv~~g~~~~~~~~--------~~~--~~~~~~-~~~--~~~~~l~~g~l-~~~~~  360 (392)
                      +||+|+|.   ++. .++++++||+++.+|......++        ...  .....+ .++  +.+.++.+|++ +....
T Consensus       260 VVI~atG~~~~i~~~~l~~mk~GgilvnvG~~~~eId~~~L~~~el~i~g~~~~~~~~~~~~g~aI~LLa~Grlvnl~~~  339 (413)
T cd00401         260 IFVTTTGNKDIITGEHFEQMKDGAIVCNIGHFDVEIDVKGLKENAVEVVNIKPQVDRYELPDGRRIILLAEGRLVNLGCA  339 (413)
T ss_pred             EEEECCCCHHHHHHHHHhcCCCCcEEEEeCCCCCccCHHHHHhhccEEEEccCCcceEEcCCcchhhhhhCcCCCCCccc
Confidence            99999993   454 48999999999999865321111        111  111111 344  68999999998 66666


Q ss_pred             CCcc-----cchh-hHHHHHHHHHhCCCC-eeEEEEe
Q 016265          361 PKGP-----FPFS-QVVEAFSYIETNKAT-GKVVIHP  390 (392)
Q Consensus       361 ~t~~-----~~l~-~~~~A~~~l~~~~~~-gKvvl~~  390 (392)
                      .+|.     |+|+ |+.++++.+.++... -|+++.|
T Consensus       340 ~gH~~~vmd~sf~~q~l~a~~l~~~~~~~~~kV~~~p  376 (413)
T cd00401         340 TGHPSFVMSNSFTNQVLAQIELWTNRDKYEVGVYFLP  376 (413)
T ss_pred             CCCccceechhHHHHHHHHHHHHhcCCcCCCcEEECC
Confidence            7888     9999 999999999887643 4666654

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=99.04  E-value=1.4e-09  Score=108.99  Aligned_cols=131  Identities=18%  Similarity=0.219  Sum_probs=95.8

Q ss_pred             CCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEE-EeCCCCc-------------c-----
Q 016265          230 FSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLA-IDYTKDN-------------F-----  290 (392)
Q Consensus       230 ~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~v-i~~~~~~-------------~-----  290 (392)
                      ..++++|+|+| +|.+|+++++.|+.+ |++|++++.+++|++.++++|++.+ +|..+++             +     
T Consensus       162 ~~pg~kVlViG-aG~iGL~Ai~~Ak~l-GA~V~a~D~~~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~  239 (509)
T PRK09424        162 KVPPAKVLVIG-AGVAGLAAIGAAGSL-GAIVRAFDTRPEVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEM  239 (509)
T ss_pred             CcCCCEEEEEC-CcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHcCCeEEEeccccccccccchhhhcchhHHHHHH
Confidence            46899999998 999999999999995 9999999999999999999999954 6653321             0     


Q ss_pred             ---ccCCCCccEEEecCcc---------HHHHHHhcccCCeEEEEcCCC-C----CC---ce------EEEE-eecH-HH
Q 016265          291 ---EDLPEKFDVVYDAIGQ---------CDRAVKAIKEGGTVVALTGAV-T----PP---GF------RFVV-TSNG-EV  342 (392)
Q Consensus       291 ---~~~~~~~D~vid~~G~---------~~~~~~~l~~~G~iv~~g~~~-~----~~---~~------~~~~-~~~~-~~  342 (392)
                         .+..+++|+||+|+|.         .+++++.+++||++++++... .    +.   .+      .+.- ...+ ++
T Consensus       240 ~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~~~GG~~e~t~~~~~v~~~~gVti~Gv~n~P~~~  319 (509)
T PRK09424        240 ALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAAENGGNCELTVPGEVVVTDNGVTIIGYTDLPSRL  319 (509)
T ss_pred             HHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEccCCCCCcccccCccceEeECCEEEEEeCCCchhH
Confidence               1112579999999983         489999999999999997642 1    11   01      1110 1123 34


Q ss_pred             HHHHHHHHHCCCcccccCCC
Q 016265          343 LKKLNPYLESGKVKPIIDPK  362 (392)
Q Consensus       343 ~~~~~~~l~~g~l~~~~~~t  362 (392)
                      ..+..+++.++.++.....+
T Consensus       320 p~~As~lla~~~i~l~~lIt  339 (509)
T PRK09424        320 PTQSSQLYGTNLVNLLKLLC  339 (509)
T ss_pred             HHHHHHHHHhCCccHHHHhc
Confidence            44688999998887654444

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=98.42  E-value=2.3e-06  Score=85.86  Aligned_cols=94  Identities=23%  Similarity=0.431  Sum_probs=74.8

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEE-EeCCCC-------------c-------
Q 016265          231 SAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLA-IDYTKD-------------N-------  289 (392)
Q Consensus       231 ~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~v-i~~~~~-------------~-------  289 (392)
                      .++++|+|+| +|.+|++++++|+.+ |+.|++.+.++++++.++++|++.+ ++..++             +       
T Consensus       162 vp~akVlViG-aG~iGl~Aa~~ak~l-GA~V~v~d~~~~rle~a~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~  239 (511)
T TIGR00561       162 VPPAKVLVIG-AGVAGLAAIGAANSL-GAIVRAFDTRPEVKEQVQSMGAEFLELDFKEEGGSGDGYAKVMSEEFIAAEME  239 (511)
T ss_pred             CCCCEEEEEC-CCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHcCCeEEeccccccccccccceeecCHHHHHHHHH
Confidence            4679999998 999999999999995 9999999999999999999998763 332210             0       


Q ss_pred             -cccCCCCccEEEecC---c--c----HHHHHHhcccCCeEEEEcCC
Q 016265          290 -FEDLPEKFDVVYDAI---G--Q----CDRAVKAIKEGGTVVALTGA  326 (392)
Q Consensus       290 -~~~~~~~~D~vid~~---G--~----~~~~~~~l~~~G~iv~~g~~  326 (392)
                       +.+..+++|++|+|+   |  .    .+.+++.+++|+.+|+++..
T Consensus       240 ~~~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIVDlA~d  286 (511)
T TIGR00561       240 LFAAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIVDLAAE  286 (511)
T ss_pred             HHHHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEEEeeeC
Confidence             112245799999998   5  2    37889999999999998644

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=98.34  E-value=5.6e-06  Score=77.52  Aligned_cols=157  Identities=16%  Similarity=0.218  Sum_probs=96.7

Q ss_pred             hcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCC--eEEEEeCCcccHHHHHhc----CCcEEEeCCCCccccC---CCCc
Q 016265          227 RTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGA--SRVAATSSTRNLEFLKSL----GADLAIDYTKDNFEDL---PEKF  297 (392)
Q Consensus       227 ~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~--~vv~~~~~~~~~~~~~~~----G~~~vi~~~~~~~~~~---~~~~  297 (392)
                      .+.+++|++||.+| +|+ |..+.++++.. |.  +++.++.+++.++.+++.    |.+.+ .....++.++   .+.|
T Consensus        72 ~~~~~~g~~VLDiG-~G~-G~~~~~~a~~~-g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v-~~~~~d~~~l~~~~~~f  147 (272)
T PRK11873         72 LAELKPGETVLDLG-SGG-GFDCFLAARRV-GPTGKVIGVDMTPEMLAKARANARKAGYTNV-EFRLGEIEALPVADNSV  147 (272)
T ss_pred             hccCCCCCEEEEeC-CCC-CHHHHHHHHHh-CCCCEEEEECCCHHHHHHHHHHHHHcCCCCE-EEEEcchhhCCCCCCce
Confidence            45688999999998 777 98888888874 64  588888899988888653    43322 1111122221   3479


Q ss_pred             cEEEecC-c--------cHHHHHHhcccCCeEEEEcCCCCCC---ce----EEEE--eecHHHHHHHHHHHHCCCcc-cc
Q 016265          298 DVVYDAI-G--------QCDRAVKAIKEGGTVVALTGAVTPP---GF----RFVV--TSNGEVLKKLNPYLESGKVK-PI  358 (392)
Q Consensus       298 D~vid~~-G--------~~~~~~~~l~~~G~iv~~g~~~~~~---~~----~~~~--~~~~~~~~~~~~~l~~g~l~-~~  358 (392)
                      |+|+... -        .++.+.++|+|||+++..+......   .+    .+..  ........++.+++++..+. ..
T Consensus       148 D~Vi~~~v~~~~~d~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~aGf~~v~  227 (272)
T PRK11873        148 DVIISNCVINLSPDKERVFKEAFRVLKPGGRFAISDVVLRGELPEEIRNDAELYAGCVAGALQEEEYLAMLAEAGFVDIT  227 (272)
T ss_pred             eEEEEcCcccCCCCHHHHHHHHHHHcCCCcEEEEEEeeccCCCCHHHHHhHHHHhccccCCCCHHHHHHHHHHCCCCceE
Confidence            9998542 1        2688999999999998865432110   00    0000  00011234566777763333 33


Q ss_pred             cCCCcccchhhHHHHHHHH--HhCCCCeeEE
Q 016265          359 IDPKGPFPFSQVVEAFSYI--ETNKATGKVV  387 (392)
Q Consensus       359 ~~~t~~~~l~~~~~A~~~l--~~~~~~gKvv  387 (392)
                      +.....++++++.++++.+  .++...++.+
T Consensus       228 i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  258 (272)
T PRK11873        228 IQPKREYRIPDAREFLEDWGIAPGRQLDGYI  258 (272)
T ss_pred             EEeccceecccHHHHHHHhccccccccCceE
Confidence            3345678899999999988  5555444444

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=98.24  E-value=7.3e-06  Score=80.73  Aligned_cols=100  Identities=21%  Similarity=0.274  Sum_probs=77.7

Q ss_pred             HHHHHHHhc-CCC-CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCCccccCCCCc
Q 016265          220 TAYEGLERT-GFS-AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFEDLPEKF  297 (392)
Q Consensus       220 ta~~al~~~-~~~-~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~~~~~~~  297 (392)
                      .+|+++.++ ++. .|++|+|+| .|.+|..+++.++. +|++|++++.++.|...+...|++ +.+     ..+..+++
T Consensus       197 s~~~ai~rat~~~l~Gk~VlViG-~G~IG~~vA~~lr~-~Ga~ViV~d~dp~ra~~A~~~G~~-v~~-----l~eal~~a  268 (425)
T PRK05476        197 SLLDGIKRATNVLIAGKVVVVAG-YGDVGKGCAQRLRG-LGARVIVTEVDPICALQAAMDGFR-VMT-----MEEAAELG  268 (425)
T ss_pred             hhHHHHHHhccCCCCCCEEEEEC-CCHHHHHHHHHHHh-CCCEEEEEcCCchhhHHHHhcCCE-ecC-----HHHHHhCC
Confidence            356777655 444 899999998 99999999999998 599999988888887777667764 222     23334589


Q ss_pred             cEEEecCcc---H-HHHHHhcccCCeEEEEcCCC
Q 016265          298 DVVYDAIGQ---C-DRAVKAIKEGGTVVALTGAV  327 (392)
Q Consensus       298 D~vid~~G~---~-~~~~~~l~~~G~iv~~g~~~  327 (392)
                      |+||+|+|.   + ...++.+++|+.++..|...
T Consensus       269 DVVI~aTG~~~vI~~~~~~~mK~GailiNvG~~d  302 (425)
T PRK05476        269 DIFVTATGNKDVITAEHMEAMKDGAILANIGHFD  302 (425)
T ss_pred             CEEEECCCCHHHHHHHHHhcCCCCCEEEEcCCCC
Confidence            999999984   3 36788999999999887654

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=98.11  E-value=4.7e-05  Score=72.09  Aligned_cols=99  Identities=17%  Similarity=0.339  Sum_probs=76.3

Q ss_pred             HHHhcCCC-CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCCccccCCCCccEEEe
Q 016265          224 GLERTGFS-AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFEDLPEKFDVVYD  302 (392)
Q Consensus       224 al~~~~~~-~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~~~~~~~D~vid  302 (392)
                      +++..... .|.+|+|+| .|.+|+.+++.++. .|+++++.+++.++++.++++|+..+ .+  .+..+...++|+||+
T Consensus       142 a~~~~~~~l~g~kvlViG-~G~iG~~~a~~L~~-~Ga~V~v~~r~~~~~~~~~~~G~~~~-~~--~~l~~~l~~aDiVI~  216 (296)
T PRK08306        142 AIEHTPITIHGSNVLVLG-FGRTGMTLARTLKA-LGANVTVGARKSAHLARITEMGLSPF-HL--SELAEEVGKIDIIFN  216 (296)
T ss_pred             HHHhCCCCCCCCEEEEEC-CcHHHHHHHHHHHH-CCCEEEEEECCHHHHHHHHHcCCeee-cH--HHHHHHhCCCCEEEE
Confidence            34443333 689999998 89999999999998 59999999999888888888987543 21  223344457999999


Q ss_pred             cCcc---HHHHHHhcccCCeEEEEcCCC
Q 016265          303 AIGQ---CDRAVKAIKEGGTVVALTGAV  327 (392)
Q Consensus       303 ~~G~---~~~~~~~l~~~G~iv~~g~~~  327 (392)
                      |++.   .+..++.+++++.++.++...
T Consensus       217 t~p~~~i~~~~l~~~~~g~vIIDla~~p  244 (296)
T PRK08306        217 TIPALVLTKEVLSKMPPEALIIDLASKP  244 (296)
T ss_pred             CCChhhhhHHHHHcCCCCcEEEEEccCC
Confidence            9873   367788899999999987655

>TIGR00936 ahcY adenosylhomocysteinase

Probab=98.07  E-value=2.9e-05  Score=76.14  Aligned_cols=99  Identities=19%  Similarity=0.244  Sum_probs=75.8

Q ss_pred             HHHHHHhc-C-CCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCCccccCCCCcc
Q 016265          221 AYEGLERT-G-FSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFEDLPEKFD  298 (392)
Q Consensus       221 a~~al~~~-~-~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~~~~~~~D  298 (392)
                      ++.++.+. + ...|++|+|+| .|.+|+.+++.++. +|++|++++.++.|...++..|+. +.+.     .+..++.|
T Consensus       181 ~~~~i~r~t~~~l~Gk~VvViG-~G~IG~~vA~~ak~-~Ga~ViV~d~dp~r~~~A~~~G~~-v~~l-----eeal~~aD  252 (406)
T TIGR00936       181 TIDGILRATNLLIAGKTVVVAG-YGWCGKGIAMRARG-MGARVIVTEVDPIRALEAAMDGFR-VMTM-----EEAAKIGD  252 (406)
T ss_pred             HHHHHHHhcCCCCCcCEEEEEC-CCHHHHHHHHHHhh-CcCEEEEEeCChhhHHHHHhcCCE-eCCH-----HHHHhcCC
Confidence            45555443 3 46899999998 99999999999998 599999988888887777777763 3221     22335789


Q ss_pred             EEEecCcc---H-HHHHHhcccCCeEEEEcCCC
Q 016265          299 VVYDAIGQ---C-DRAVKAIKEGGTVVALTGAV  327 (392)
Q Consensus       299 ~vid~~G~---~-~~~~~~l~~~G~iv~~g~~~  327 (392)
                      ++|+++|.   + ...+..+++|+.++..|...
T Consensus       253 VVItaTG~~~vI~~~~~~~mK~GailiN~G~~~  285 (406)
T TIGR00936       253 IFITATGNKDVIRGEHFENMKDGAIVANIGHFD  285 (406)
T ss_pred             EEEECCCCHHHHHHHHHhcCCCCcEEEEECCCC
Confidence            99999984   3 35888999999999887643

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=98.03  E-value=6e-05  Score=69.71  Aligned_cols=138  Identities=22%  Similarity=0.278  Sum_probs=89.3

Q ss_pred             CCCCCCCEEEecccccccCCCCCCCcceeEEEecCCceeeCCCCCCHHhHhccchhHHHHHHHHHhcCCCCCCeEEEEcC
Q 016265          162 KEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLERTGFSAGKSILVLNG  241 (392)
Q Consensus       162 ~~~~vGdrV~~~~~~~~~~~~~~~G~~a~~~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~al~~~~~~~g~~VlI~Ga  241 (392)
                      +.+++||+++..+            +|.+|.. +...++.+++++++..+.- +... ...+.+.. ...++++||-+| 
T Consensus        65 ~p~~~g~~~~i~p------------~~~~~~~-~~~~~i~i~p~~afgtg~h-~tt~-~~l~~l~~-~~~~~~~VLDiG-  127 (250)
T PRK00517         65 HPIRIGDRLWIVP------------SWEDPPD-PDEINIELDPGMAFGTGTH-PTTR-LCLEALEK-LVLPGKTVLDVG-  127 (250)
T ss_pred             CCEEEcCCEEEEC------------CCcCCCC-CCeEEEEECCCCccCCCCC-HHHH-HHHHHHHh-hcCCCCEEEEeC-
Confidence            4477899887753            4666654 7778899999988875542 1111 12333332 256899999998 


Q ss_pred             CCcHHHHHHHHHHHhcCC-eEEEEeCCcccHHHHHhc----CCcEEEeCCCCccccCCCCccEEEecCc-c-----HHHH
Q 016265          242 SGGVGSLVIQLAKQVFGA-SRVAATSSTRNLEFLKSL----GADLAIDYTKDNFEDLPEKFDVVYDAIG-Q-----CDRA  310 (392)
Q Consensus       242 ~G~vG~~aiqlak~~~G~-~vv~~~~~~~~~~~~~~~----G~~~vi~~~~~~~~~~~~~~D~vid~~G-~-----~~~~  310 (392)
                      +|. |.+++.+++.  |+ +++.++.++..++.+++.    +....+..     ......||+|+.... .     +..+
T Consensus       128 cGs-G~l~i~~~~~--g~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~-----~~~~~~fD~Vvani~~~~~~~l~~~~  199 (250)
T PRK00517        128 CGS-GILAIAAAKL--GAKKVLAVDIDPQAVEAARENAELNGVELNVYL-----PQGDLKADVIVANILANPLLELAPDL  199 (250)
T ss_pred             CcH-HHHHHHHHHc--CCCeEEEEECCHHHHHHHHHHHHHcCCCceEEE-----ccCCCCcCEEEEcCcHHHHHHHHHHH
Confidence            776 9888877763  66 488888888887777543    32111111     000115899987654 1     3678


Q ss_pred             HHhcccCCeEEEEc
Q 016265          311 VKAIKEGGTVVALT  324 (392)
Q Consensus       311 ~~~l~~~G~iv~~g  324 (392)
                      .++|++||+++..+
T Consensus       200 ~~~LkpgG~lilsg  213 (250)
T PRK00517        200 ARLLKPGGRLILSG  213 (250)
T ss_pred             HHhcCCCcEEEEEE
Confidence            88999999998764

>PLN02494 adenosylhomocysteinase

Probab=97.90  E-value=4.4e-05  Score=75.63  Aligned_cols=97  Identities=20%  Similarity=0.219  Sum_probs=75.5

Q ss_pred             HHHHHhc-C-CCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCCccccCCCCccE
Q 016265          222 YEGLERT-G-FSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFEDLPEKFDV  299 (392)
Q Consensus       222 ~~al~~~-~-~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~~~~~~~D~  299 (392)
                      +.++.+. + .-.|++|+|+| .|.+|+.+++.++. +|++|+++..++.+...+...|+..+ +     ..+..+..|+
T Consensus       241 ~d~i~r~t~i~LaGKtVvViG-yG~IGr~vA~~aka-~Ga~VIV~e~dp~r~~eA~~~G~~vv-~-----leEal~~ADV  312 (477)
T PLN02494        241 PDGLMRATDVMIAGKVAVICG-YGDVGKGCAAAMKA-AGARVIVTEIDPICALQALMEGYQVL-T-----LEDVVSEADI  312 (477)
T ss_pred             HHHHHHhcCCccCCCEEEEEC-CCHHHHHHHHHHHH-CCCEEEEEeCCchhhHHHHhcCCeec-c-----HHHHHhhCCE
Confidence            5555332 3 35799999998 99999999999998 69998888888877777777776532 1     2333356899


Q ss_pred             EEecCcc---H-HHHHHhcccCCeEEEEcCC
Q 016265          300 VYDAIGQ---C-DRAVKAIKEGGTVVALTGA  326 (392)
Q Consensus       300 vid~~G~---~-~~~~~~l~~~G~iv~~g~~  326 (392)
                      +|+++|.   + ...++.|++++.++.+|..
T Consensus       313 VI~tTGt~~vI~~e~L~~MK~GAiLiNvGr~  343 (477)
T PLN02494        313 FVTTTGNKDIIMVDHMRKMKNNAIVCNIGHF  343 (477)
T ss_pred             EEECCCCccchHHHHHhcCCCCCEEEEcCCC
Confidence            9999983   2 7899999999999999874

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=97.67  E-value=8.3e-05  Score=71.01  Aligned_cols=103  Identities=21%  Similarity=0.272  Sum_probs=72.8

Q ss_pred             CceeeCCCCCCHHhHhcc-chhHHHHHHHHHhcCC----CCCCeEEEEcCCCcHHHHHHHHHHHhcCC-eEEEEeCCccc
Q 016265          197 RLLAPKPKNLDFVQAAGL-PLAIETAYEGLERTGF----SAGKSILVLNGSGGVGSLVIQLAKQVFGA-SRVAATSSTRN  270 (392)
Q Consensus       197 ~~~~~iP~~l~~~~aa~l-~~~~~ta~~al~~~~~----~~g~~VlI~Ga~G~vG~~aiqlak~~~G~-~vv~~~~~~~~  270 (392)
                      ..++++|+.+..+.++.. +.+  .++++++.+..    -+|.+|+|+| +|.+|.++++.++. .|+ +++++.++.+|
T Consensus       139 ~~a~~~~k~vr~et~i~~~~~s--v~~~Av~~a~~~~~~l~~~~V~ViG-aG~iG~~~a~~L~~-~g~~~V~v~~r~~~r  214 (311)
T cd05213         139 QKAIKVGKRVRTETGISRGAVS--ISSAAVELAEKIFGNLKGKKVLVIG-AGEMGELAAKHLAA-KGVAEITIANRTYER  214 (311)
T ss_pred             HHHHHHHHHHhhhcCCCCCCcC--HHHHHHHHHHHHhCCccCCEEEEEC-cHHHHHHHHHHHHH-cCCCEEEEEeCCHHH
Confidence            346778888888877665 433  47777754433    4789999998 89999999999887 465 56667777776


Q ss_pred             H-HHHHhcCCcEEEeCCCCccccCCCCccEEEecCcc
Q 016265          271 L-EFLKSLGADLAIDYTKDNFEDLPEKFDVVYDAIGQ  306 (392)
Q Consensus       271 ~-~~~~~~G~~~vi~~~~~~~~~~~~~~D~vid~~G~  306 (392)
                      . ++++++|++ +++..  +..+....+|+||.|++.
T Consensus       215 a~~la~~~g~~-~~~~~--~~~~~l~~aDvVi~at~~  248 (311)
T cd05213         215 AEELAKELGGN-AVPLD--ELLELLNEADVVISATGA  248 (311)
T ss_pred             HHHHHHHcCCe-EEeHH--HHHHHHhcCCEEEECCCC
Confidence            4 667788874 33332  233334568999999984

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>PTZ00075 Adenosylhomocysteinase; Provisional

Probab=97.64  E-value=0.00055  Score=68.09  Aligned_cols=89  Identities=24%  Similarity=0.266  Sum_probs=70.2

Q ss_pred             CCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCCccccCCCCccEEEecCcc---
Q 016265          230 FSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFEDLPEKFDVVYDAIGQ---  306 (392)
Q Consensus       230 ~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~~~~~~~D~vid~~G~---  306 (392)
                      .-.|++|+|+| .|.+|...++.++. +|++|+++..++.+...+...|+..+      ++.+..+..|+|+.++|.   
T Consensus       251 ~LaGKtVgVIG-~G~IGr~vA~rL~a-~Ga~ViV~e~dp~~a~~A~~~G~~~~------~leell~~ADIVI~atGt~~i  322 (476)
T PTZ00075        251 MIAGKTVVVCG-YGDVGKGCAQALRG-FGARVVVTEIDPICALQAAMEGYQVV------TLEDVVETADIFVTATGNKDI  322 (476)
T ss_pred             CcCCCEEEEEC-CCHHHHHHHHHHHH-CCCEEEEEeCCchhHHHHHhcCceec------cHHHHHhcCCEEEECCCcccc
Confidence            45799999998 99999999999998 69998888777766655555675422      234445678999999983   


Q ss_pred             H-HHHHHhcccCCeEEEEcCC
Q 016265          307 C-DRAVKAIKEGGTVVALTGA  326 (392)
Q Consensus       307 ~-~~~~~~l~~~G~iv~~g~~  326 (392)
                      + ...++.|++++.++.+|..
T Consensus       323 I~~e~~~~MKpGAiLINvGr~  343 (476)
T PTZ00075        323 ITLEHMRRMKNNAIVGNIGHF  343 (476)
T ss_pred             cCHHHHhccCCCcEEEEcCCC
Confidence            3 5899999999999988754

>TIGR00518 alaDH alanine dehydrogenase

Probab=97.62  E-value=0.00028  Score=68.99  Aligned_cols=92  Identities=21%  Similarity=0.374  Sum_probs=67.7

Q ss_pred             CCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHH-hcCCcEEEeCCC-CccccCCCCccEEEecC---cc-
Q 016265          233 GKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLK-SLGADLAIDYTK-DNFEDLPEKFDVVYDAI---GQ-  306 (392)
Q Consensus       233 g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~-~~G~~~vi~~~~-~~~~~~~~~~D~vid~~---G~-  306 (392)
                      +.+|+|+| +|.+|+.+++.++. .|++|+++++++++++.+. .+|......... ..+.+....+|++|+|+   |. 
T Consensus       167 ~~~VlViG-aG~vG~~aa~~a~~-lGa~V~v~d~~~~~~~~l~~~~g~~v~~~~~~~~~l~~~l~~aDvVI~a~~~~g~~  244 (370)
T TIGR00518       167 PGDVTIIG-GGVVGTNAAKMANG-LGATVTILDINIDRLRQLDAEFGGRIHTRYSNAYEIEDAVKRADLLIGAVLIPGAK  244 (370)
T ss_pred             CceEEEEc-CCHHHHHHHHHHHH-CCCeEEEEECCHHHHHHHHHhcCceeEeccCCHHHHHHHHccCCEEEEccccCCCC
Confidence            45699998 89999999999998 4999888888888877765 455532222221 22333446799999997   32 


Q ss_pred             -----HHHHHHhcccCCeEEEEcCC
Q 016265          307 -----CDRAVKAIKEGGTVVALTGA  326 (392)
Q Consensus       307 -----~~~~~~~l~~~G~iv~~g~~  326 (392)
                           ....++.+++++.++.++..
T Consensus       245 ~p~lit~~~l~~mk~g~vIvDva~d  269 (370)
T TIGR00518       245 APKLVSNSLVAQMKPGAVIVDVAID  269 (370)
T ss_pred             CCcCcCHHHHhcCCCCCEEEEEecC
Confidence                 37788899999999998643

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=97.58  E-value=0.00011  Score=76.14  Aligned_cols=76  Identities=21%  Similarity=0.396  Sum_probs=58.4

Q ss_pred             CCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCC---------------------cccHHHHHhcCCcEEEeCCC
Q 016265          229 GFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSS---------------------TRNLEFLKSLGADLAIDYTK  287 (392)
Q Consensus       229 ~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~---------------------~~~~~~~~~~G~~~vi~~~~  287 (392)
                      ..+.|++|+|+| +|++|+++++.++. .|++|++++..                     +.+++.++++|++..++...
T Consensus       133 ~~~~g~~V~VIG-aGpaGL~aA~~l~~-~G~~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~~~Gv~~~~~~~~  210 (564)
T PRK12771        133 APDTGKRVAVIG-GGPAGLSAAYHLRR-MGHAVTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQRILDLGVEVRLGVRV  210 (564)
T ss_pred             CCCCCCEEEEEC-CCHHHHHHHHHHHH-CCCeEEEEecCCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCCEEEeCCEE
Confidence            367899999998 99999999999988 59998888742                     34567788999987776533


Q ss_pred             -Cc--cccCCCCccEEEecCcc
Q 016265          288 -DN--FEDLPEKFDVVYDAIGQ  306 (392)
Q Consensus       288 -~~--~~~~~~~~D~vid~~G~  306 (392)
                       .+  ..+...++|+||+++|.
T Consensus       211 ~~~~~~~~~~~~~D~Vi~AtG~  232 (564)
T PRK12771        211 GEDITLEQLEGEFDAVFVAIGA  232 (564)
T ss_pred             CCcCCHHHHHhhCCEEEEeeCC
Confidence             22  22334579999999994

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=97.51  E-value=0.00022  Score=66.69  Aligned_cols=96  Identities=26%  Similarity=0.510  Sum_probs=60.8

Q ss_pred             HHhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHH----hcCCcEEEeCCCCccccCCCCccEE
Q 016265          225 LERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLK----SLGADLAIDYTKDNFEDLPEKFDVV  300 (392)
Q Consensus       225 l~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~----~~G~~~vi~~~~~~~~~~~~~~D~v  300 (392)
                      ++++++++|++||-+| +| -|-++..+|+. +|++|+.++.|++..+.++    +.|...-+.....++.+....||.|
T Consensus        55 ~~~~~l~~G~~vLDiG-cG-wG~~~~~~a~~-~g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~~~fD~I  131 (273)
T PF02353_consen   55 CEKLGLKPGDRVLDIG-CG-WGGLAIYAAER-YGCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLPGKFDRI  131 (273)
T ss_dssp             HTTTT--TT-EEEEES--T-TSHHHHHHHHH-H--EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG---S-SEE
T ss_pred             HHHhCCCCCCEEEEeC-CC-ccHHHHHHHHH-cCcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccCCCCCEE
Confidence            4678999999999998 55 78889999998 6999999999999888764    4553221222223445555689988


Q ss_pred             Eec-----Cc--c----HHHHHHhcccCCeEEEE
Q 016265          301 YDA-----IG--Q----CDRAVKAIKEGGTVVAL  323 (392)
Q Consensus       301 id~-----~G--~----~~~~~~~l~~~G~iv~~  323 (392)
                      +..     +|  .    ++.+.+.|+|||+++.-
T Consensus       132 vSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq  165 (273)
T PF02353_consen  132 VSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQ  165 (273)
T ss_dssp             EEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEE
T ss_pred             EEEechhhcChhHHHHHHHHHHHhcCCCcEEEEE
Confidence            743     44  1    47888899999998743

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>PRK08324 short chain dehydrogenase; Validated

Probab=97.40  E-value=0.00086  Score=71.06  Aligned_cols=109  Identities=23%  Similarity=0.247  Sum_probs=71.2

Q ss_pred             CcceeEEEecCCceeeCCCCCCHHhHhccchhHHHHHHHHHhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEe
Q 016265          186 GSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAAT  265 (392)
Q Consensus       186 G~~a~~~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~al~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~  265 (392)
                      -++++|..+++..++.+ +.++.+++.....         ......+|++|||+||+|++|+..++.+.. .|++|++++
T Consensus       385 ~~~~~~~~l~~~~~f~i-~~~~~e~a~l~~~---------~~~~~l~gk~vLVTGasggIG~~la~~L~~-~Ga~Vvl~~  453 (681)
T PRK08324        385 EAVGRYEPLSEQEAFDI-EYWSLEQAKLQRM---------PKPKPLAGKVALVTGAAGGIGKATAKRLAA-EGACVVLAD  453 (681)
T ss_pred             hhcCCccCCChhhhcce-eeehhhhhhhhcC---------CCCcCCCCCEEEEecCCCHHHHHHHHHHHH-CcCEEEEEe
Confidence            45677877777777776 6666666642100         012234689999999999999999988877 599999999


Q ss_pred             CCcccHHHHH-hcCC--c---EEEeCCCCc-ccc-------CCCCccEEEecCc
Q 016265          266 SSTRNLEFLK-SLGA--D---LAIDYTKDN-FED-------LPEKFDVVYDAIG  305 (392)
Q Consensus       266 ~~~~~~~~~~-~~G~--~---~vi~~~~~~-~~~-------~~~~~D~vid~~G  305 (392)
                      ++.++++.+. .++.  .   ...|..+.. +.+       ..+++|++|++.|
T Consensus       454 r~~~~~~~~~~~l~~~~~v~~v~~Dvtd~~~v~~~~~~~~~~~g~iDvvI~~AG  507 (681)
T PRK08324        454 LDEEAAEAAAAELGGPDRALGVACDVTDEAAVQAAFEEAALAFGGVDIVVSNAG  507 (681)
T ss_pred             CCHHHHHHHHHHHhccCcEEEEEecCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            8887765543 3443  1   122333221 111       1247999999987

>TIGR01035 hemA glutamyl-tRNA reductase

Probab=97.38  E-value=1.8e-05  Score=78.61  Aligned_cols=148  Identities=18%  Similarity=0.257  Sum_probs=94.8

Q ss_pred             cCCCceeEEEEEeCCCCCCCCCCCEEEe-cc-------cccccCCCCCCCcceeEEEecCCceee---C-CCCCCHHhHh
Q 016265          145 VPGYDVAGVVVKVGTQVKEFKEGDEVYG-DI-------NEKALEGPKQFGSLAEYTAVEERLLAP---K-PKNLDFVQAA  212 (392)
Q Consensus       145 v~G~e~~G~V~~vG~~v~~~~vGdrV~~-~~-------~~~~~~~~~~~G~~a~~~~v~~~~~~~---i-P~~l~~~~aa  212 (392)
                      .-|.|+++.+.+|++++++.-+|+.-++ .+       ......|...++.|++++.++. .+..   + +..++...+|
T Consensus        89 ~~~~~a~~hl~~Va~GldS~V~GE~qI~gQvk~a~~~a~~~~~~g~~l~~lf~~a~~~~k-~vr~~t~i~~~~vSv~~~A  167 (417)
T TIGR01035        89 LTGESAVEHLFRVASGLDSMVVGETQILGQVKNAYKVAQEEKTVGKVLERLFQKAFSVGK-RVRTETDISAGAVSISSAA  167 (417)
T ss_pred             cCchHHHHHHHHHHhhhhhhhcCChHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhh-hhhhhcCCCCCCcCHHHHH
Confidence            4688999999999999888666666431 10       0112233445678899887766 3322   3 2233322221


Q ss_pred             ccchhHHHHHHHHHhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcC-CeEEEEeCCcccHH-HHHhcCCcEEEeCCCCcc
Q 016265          213 GLPLAIETAYEGLERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFG-ASRVAATSSTRNLE-FLKSLGADLAIDYTKDNF  290 (392)
Q Consensus       213 ~l~~~~~ta~~al~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G-~~vv~~~~~~~~~~-~~~~~G~~~vi~~~~~~~  290 (392)
                              .-.+.+..+..+|++|+|+| +|.+|.++++.++. .| .+++++.++.++.+ +++++|.. .++..  +.
T Consensus       168 --------v~la~~~~~~l~~~~VlViG-aG~iG~~~a~~L~~-~G~~~V~v~~rs~~ra~~la~~~g~~-~i~~~--~l  234 (417)
T TIGR01035       168 --------VELAERIFGSLKGKKALLIG-AGEMGELVAKHLLR-KGVGKILIANRTYERAEDLAKELGGE-AVKFE--DL  234 (417)
T ss_pred             --------HHHHHHHhCCccCCEEEEEC-ChHHHHHHHHHHHH-CCCCEEEEEeCCHHHHHHHHHHcCCe-EeeHH--HH
Confidence                    11122334456789999998 89999999999988 58 56778888877754 66777764 33321  23


Q ss_pred             ccCCCCccEEEecCcc
Q 016265          291 EDLPEKFDVVYDAIGQ  306 (392)
Q Consensus       291 ~~~~~~~D~vid~~G~  306 (392)
                      .+...++|+||+|+|.
T Consensus       235 ~~~l~~aDvVi~aT~s  250 (417)
T TIGR01035       235 EEYLAEADIVISSTGA  250 (417)
T ss_pred             HHHHhhCCEEEECCCC
Confidence            3344589999999983

This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=97.37  E-value=0.0022  Score=56.83  Aligned_cols=101  Identities=21%  Similarity=0.256  Sum_probs=70.9

Q ss_pred             HHHHHHhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHH----HHHhcCCcEEEeCCCCcccc--CC
Q 016265          221 AYEGLERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLE----FLKSLGADLAIDYTKDNFED--LP  294 (392)
Q Consensus       221 a~~al~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~----~~~~~G~~~vi~~~~~~~~~--~~  294 (392)
                      ....++...+++|++||=+|  .|.|..++-+|+.. + +|+.+.+.++=.+    .++.+|...|.-...+...-  ..
T Consensus        61 vA~m~~~L~~~~g~~VLEIG--tGsGY~aAvla~l~-~-~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~~~  136 (209)
T COG2518          61 VARMLQLLELKPGDRVLEIG--TGSGYQAAVLARLV-G-RVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWPEE  136 (209)
T ss_pred             HHHHHHHhCCCCCCeEEEEC--CCchHHHHHHHHHh-C-eEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCCCC
Confidence            44456778899999999997  45699999999974 5 7888877665333    34668875433222222211  22


Q ss_pred             CCccEEEecCc--c-HHHHHHhcccCCeEEEEcC
Q 016265          295 EKFDVVYDAIG--Q-CDRAVKAIKEGGTVVALTG  325 (392)
Q Consensus       295 ~~~D~vid~~G--~-~~~~~~~l~~~G~iv~~g~  325 (392)
                      ..||.++-+.+  . .+..++.|++||++|..-+
T Consensus       137 aPyD~I~Vtaaa~~vP~~Ll~QL~~gGrlv~PvG  170 (209)
T COG2518         137 APYDRIIVTAAAPEVPEALLDQLKPGGRLVIPVG  170 (209)
T ss_pred             CCcCEEEEeeccCCCCHHHHHhcccCCEEEEEEc
Confidence            47999987766  2 4899999999999988755

>PRK00045 hemA glutamyl-tRNA reductase; Reviewed

Probab=97.32  E-value=0.0003  Score=70.14  Aligned_cols=148  Identities=19%  Similarity=0.258  Sum_probs=92.2

Q ss_pred             cCCCceeEEEEEeCCCCCCCCCCCEEEe-ccc-------ccccCCCCCCCcceeEEEecCCceeeCCCCCCHHhHhccch
Q 016265          145 VPGYDVAGVVVKVGTQVKEFKEGDEVYG-DIN-------EKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPL  216 (392)
Q Consensus       145 v~G~e~~G~V~~vG~~v~~~~vGdrV~~-~~~-------~~~~~~~~~~G~~a~~~~v~~~~~~~iP~~l~~~~aa~l~~  216 (392)
                      .-|||+++.+.+|+++.++.-+|+.-++ .+.       .....|...++.|++.+        ++|+.+..+.+.. ..
T Consensus        91 ~~g~ea~~hl~~V~~GldS~V~GE~qIlgQvk~a~~~a~~~g~~g~~l~~lf~~a~--------~~~k~v~~~t~i~-~~  161 (423)
T PRK00045         91 HEGEEAVRHLFRVASGLDSMVLGEPQILGQVKDAYALAQEAGTVGTILNRLFQKAF--------SVAKRVRTETGIG-AG  161 (423)
T ss_pred             cCCHHHHHHHHHHHhhhhhhhcCChHHHHHHHHHHHHHHHcCCchHHHHHHHHHHH--------HHHhhHhhhcCCC-CC
Confidence            4699999999999999888666665321 110       01111112234444443        3344333332222 22


Q ss_pred             hHHHHHHHHHhcC----CCCCCeEEEEcCCCcHHHHHHHHHHHhcCC-eEEEEeCCcccHH-HHHhcCCcEEEeCCCCcc
Q 016265          217 AIETAYEGLERTG----FSAGKSILVLNGSGGVGSLVIQLAKQVFGA-SRVAATSSTRNLE-FLKSLGADLAIDYTKDNF  290 (392)
Q Consensus       217 ~~~ta~~al~~~~----~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~-~vv~~~~~~~~~~-~~~~~G~~~vi~~~~~~~  290 (392)
                      +...++++++.+.    ..+|++|+|+| +|.+|.++++.++. .|+ +++++.++.++.+ +++++|.+ +++.  .+.
T Consensus       162 ~~Sv~~~Av~~a~~~~~~~~~~~vlViG-aG~iG~~~a~~L~~-~G~~~V~v~~r~~~ra~~la~~~g~~-~~~~--~~~  236 (423)
T PRK00045        162 AVSVASAAVELAKQIFGDLSGKKVLVIG-AGEMGELVAKHLAE-KGVRKITVANRTLERAEELAEEFGGE-AIPL--DEL  236 (423)
T ss_pred             CcCHHHHHHHHHHHhhCCccCCEEEEEC-chHHHHHHHHHHHH-CCCCeEEEEeCCHHHHHHHHHHcCCc-EeeH--HHH
Confidence            3334777775433    35789999998 89999999999987 587 6777788877755 66778864 3333  223


Q ss_pred             ccCCCCccEEEecCcc
Q 016265          291 EDLPEKFDVVYDAIGQ  306 (392)
Q Consensus       291 ~~~~~~~D~vid~~G~  306 (392)
                      .+...++|+||+|+|+
T Consensus       237 ~~~l~~aDvVI~aT~s  252 (423)
T PRK00045        237 PEALAEADIVISSTGA  252 (423)
T ss_pred             HHHhccCCEEEECCCC
Confidence            3334579999999983

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=97.31  E-value=0.0011  Score=62.43  Aligned_cols=91  Identities=16%  Similarity=0.317  Sum_probs=69.4

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCCccccCCCCccEEEecCcc-H--H
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFEDLPEKFDVVYDAIGQ-C--D  308 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~~~~~~~D~vid~~G~-~--~  308 (392)
                      .|++|+|+| .|.+|.+++..++. +|+++++..+++++.+.+.++|... +..  .+..+...++|+||+++.. +  .
T Consensus       150 ~gk~v~IiG-~G~iG~avA~~L~~-~G~~V~v~~R~~~~~~~~~~~g~~~-~~~--~~l~~~l~~aDiVint~P~~ii~~  224 (287)
T TIGR02853       150 HGSNVMVLG-FGRTGMTIARTFSA-LGARVFVGARSSADLARITEMGLIP-FPL--NKLEEKVAEIDIVINTIPALVLTA  224 (287)
T ss_pred             CCCEEEEEc-ChHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHCCCee-ecH--HHHHHHhccCCEEEECCChHHhCH
Confidence            578999998 89999999999998 5999999999888877777777542 221  2233344689999999872 2  5


Q ss_pred             HHHHhcccCCeEEEEcCCC
Q 016265          309 RAVKAIKEGGTVVALTGAV  327 (392)
Q Consensus       309 ~~~~~l~~~G~iv~~g~~~  327 (392)
                      ..++.++++..++.++..+
T Consensus       225 ~~l~~~k~~aliIDlas~P  243 (287)
T TIGR02853       225 DVLSKLPKHAVIIDLASKP  243 (287)
T ss_pred             HHHhcCCCCeEEEEeCcCC
Confidence            6778889988888887644

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=97.28  E-value=0.0024  Score=56.78  Aligned_cols=117  Identities=21%  Similarity=0.255  Sum_probs=77.9

Q ss_pred             HHhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhc-CCeEEEEeCCcccHHHHH----hcC-CcEE--EeCCCCc-cccCCC
Q 016265          225 LERTGFSAGKSILVLNGSGGVGSLVIQLAKQVF-GASRVAATSSTRNLEFLK----SLG-ADLA--IDYTKDN-FEDLPE  295 (392)
Q Consensus       225 l~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~-G~~vv~~~~~~~~~~~~~----~~G-~~~v--i~~~~~~-~~~~~~  295 (392)
                      +.+..+.+|++|+-+| +|. |.+++++|+.+. +.+++.++.+++.++.++    .+| .+.+  +..+... ......
T Consensus        33 l~~l~~~~~~~vlDlG-~Gt-G~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~  110 (198)
T PRK00377         33 LSKLRLRKGDMILDIG-CGT-GSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINE  110 (198)
T ss_pred             HHHcCCCCcCEEEEeC-CcC-CHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCC
Confidence            3567889999999998 777 999999998742 357888899888877654    456 3322  2222111 122345


Q ss_pred             CccEEEecCc------cHHHHHHhcccCCeEEEEcCCCCCCceEEEEeecHHHHHHHHHHHHCCCcc
Q 016265          296 KFDVVYDAIG------QCDRAVKAIKEGGTVVALTGAVTPPGFRFVVTSNGEVLKKLNPYLESGKVK  356 (392)
Q Consensus       296 ~~D~vid~~G------~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~l~  356 (392)
                      .+|.||...+      .++.+.+.|++||+++...             .....+.++.+.+.+..+.
T Consensus       111 ~~D~V~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~-------------~~~~~~~~~~~~l~~~g~~  164 (198)
T PRK00377        111 KFDRIFIGGGSEKLKEIISASWEIIKKGGRIVIDA-------------ILLETVNNALSALENIGFN  164 (198)
T ss_pred             CCCEEEECCCcccHHHHHHHHHHHcCCCcEEEEEe-------------ecHHHHHHHHHHHHHcCCC
Confidence            7999998654      2477888999999987431             1334567777777654443

>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=97.25  E-value=0.003  Score=57.32  Aligned_cols=94  Identities=21%  Similarity=0.356  Sum_probs=63.0

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHH-Hhc---CCcEEE--eCCCCc-ccc-------CCCCc
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFL-KSL---GADLAI--DYTKDN-FED-------LPEKF  297 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~-~~~---G~~~vi--~~~~~~-~~~-------~~~~~  297 (392)
                      .+++|+|+||+|++|..+++.+.. .|++|+++++++++.+.+ +++   +..+.+  |..+.. ..+       ...++
T Consensus         4 ~~~~vlItGa~g~iG~~~a~~l~~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i   82 (238)
T PRK05786          4 KGKKVAIIGVSEGLGYAVAYFALK-EGAQVCINSRNENKLKRMKKTLSKYGNIHYVVGDVSSTESARNVIEKAAKVLNAI   82 (238)
T ss_pred             CCcEEEEECCCchHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEECCCCCHHHHHHHHHHHHHHhCCC
Confidence            468999999999999999999987 599999999988776555 222   222333  222211 111       12357


Q ss_pred             cEEEecCcc--------------------------HHHHHHhcccCCeEEEEcCC
Q 016265          298 DVVYDAIGQ--------------------------CDRAVKAIKEGGTVVALTGA  326 (392)
Q Consensus       298 D~vid~~G~--------------------------~~~~~~~l~~~G~iv~~g~~  326 (392)
                      |.++.+.|.                          .+..+++++++|+++.++..
T Consensus        83 d~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss~  137 (238)
T PRK05786         83 DGLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLVSSM  137 (238)
T ss_pred             CEEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEEecc
Confidence            999988762                          23445566778999888754

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=97.24  E-value=0.0016  Score=64.02  Aligned_cols=101  Identities=20%  Similarity=0.363  Sum_probs=70.8

Q ss_pred             HHHHHH-HhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCCccccCCCCcc
Q 016265          220 TAYEGL-ERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFEDLPEKFD  298 (392)
Q Consensus       220 ta~~al-~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~~~~~~~D  298 (392)
                      ..+..+ +..++++|++||-+| + |.|..+..+++. +|++|+.++.+++.++.+++......++....++.+..+.+|
T Consensus       154 ~k~~~l~~~l~l~~g~rVLDIG-c-G~G~~a~~la~~-~g~~V~giDlS~~~l~~A~~~~~~l~v~~~~~D~~~l~~~fD  230 (383)
T PRK11705        154 AKLDLICRKLQLKPGMRVLDIG-C-GWGGLARYAAEH-YGVSVVGVTISAEQQKLAQERCAGLPVEIRLQDYRDLNGQFD  230 (383)
T ss_pred             HHHHHHHHHhCCCCCCEEEEeC-C-CccHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHHhccCeEEEEECchhhcCCCCC
Confidence            344433 567889999999998 4 578888999987 599999999999999988764322112222223333345799


Q ss_pred             EEEec-----Ccc------HHHHHHhcccCCeEEEE
Q 016265          299 VVYDA-----IGQ------CDRAVKAIKEGGTVVAL  323 (392)
Q Consensus       299 ~vid~-----~G~------~~~~~~~l~~~G~iv~~  323 (392)
                      .|+..     +|.      ++.+.++|+|||+++..
T Consensus       231 ~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~  266 (383)
T PRK11705        231 RIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLH  266 (383)
T ss_pred             EEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEE
Confidence            88743     331      46788899999998875

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=97.23  E-value=0.0035  Score=59.17  Aligned_cols=111  Identities=16%  Similarity=0.041  Sum_probs=69.6

Q ss_pred             CCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhc----CCcE-EEeCCCCccccCCCCccEEEecC
Q 016265          230 FSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSL----GADL-AIDYTKDNFEDLPEKFDVVYDAI  304 (392)
Q Consensus       230 ~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~----G~~~-vi~~~~~~~~~~~~~~D~vid~~  304 (392)
                      ..+|++||-+| +|. |.+++.+++. ...+++.++.++..++.+++.    +... +............++||+|+...
T Consensus       157 ~~~g~~VLDvG-cGs-G~lai~aa~~-g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~~~~~fDlVvan~  233 (288)
T TIGR00406       157 DLKDKNVIDVG-CGS-GILSIAALKL-GAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQPIEGKADVIVANI  233 (288)
T ss_pred             cCCCCEEEEeC-CCh-hHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccccCCCceEEEEec
Confidence            45789999998 666 8888888764 334788888888877766542    3221 11111111111245799999754


Q ss_pred             c------cHHHHHHhcccCCeEEEEcCCCCCCceEEEEeecHHHHHHHHHHHHCCCccc
Q 016265          305 G------QCDRAVKAIKEGGTVVALTGAVTPPGFRFVVTSNGEVLKKLNPYLESGKVKP  357 (392)
Q Consensus       305 G------~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~l~~  357 (392)
                      .      .+..+.++|++||+++..+.             ......++.+.++++ ++.
T Consensus       234 ~~~~l~~ll~~~~~~LkpgG~li~sgi-------------~~~~~~~v~~~~~~~-f~~  278 (288)
T TIGR00406       234 LAEVIKELYPQFSRLVKPGGWLILSGI-------------LETQAQSVCDAYEQG-FTV  278 (288)
T ss_pred             CHHHHHHHHHHHHHHcCCCcEEEEEeC-------------cHhHHHHHHHHHHcc-Cce
Confidence            3      13677889999999976542             234456666666665 543

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=97.23  E-value=0.0033  Score=58.42  Aligned_cols=98  Identities=24%  Similarity=0.486  Sum_probs=71.8

Q ss_pred             HHhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHH----hcCCcEEEeCCCCccccCCCCccEE
Q 016265          225 LERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLK----SLGADLAIDYTKDNFEDLPEKFDVV  300 (392)
Q Consensus       225 l~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~----~~G~~~vi~~~~~~~~~~~~~~D~v  300 (392)
                      +++.++++|++||=+| + |=|.+++.+|+. +|++|+.++-|+++.+.++    +.|...-+...-.++.+..+.||-|
T Consensus        65 ~~kl~L~~G~~lLDiG-C-GWG~l~~~aA~~-y~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~e~fDrI  141 (283)
T COG2230          65 LEKLGLKPGMTLLDIG-C-GWGGLAIYAAEE-YGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFEEPFDRI  141 (283)
T ss_pred             HHhcCCCCCCEEEEeC-C-ChhHHHHHHHHH-cCCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEecccccccccccee
Confidence            3789999999999997 4 458899999998 6999999999999887764    4564422222223444455568887


Q ss_pred             Ee-----cCcc------HHHHHHhcccCCeEEEEcC
Q 016265          301 YD-----AIGQ------CDRAVKAIKEGGTVVALTG  325 (392)
Q Consensus       301 id-----~~G~------~~~~~~~l~~~G~iv~~g~  325 (392)
                      +.     .+|.      +..+.++|++||+++...-
T Consensus       142 vSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I  177 (283)
T COG2230         142 VSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSI  177 (283)
T ss_pred             eehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEe
Confidence            63     3452      4788889999999987643

>PF11017 DUF2855: Protein of unknown function (DUF2855); InterPro: IPR021276 This family of proteins has no known function

Probab=97.17  E-value=0.088  Score=49.82  Aligned_cols=167  Identities=17%  Similarity=0.166  Sum_probs=96.2

Q ss_pred             eEEEEEeCCCCCCCCCCCEEEeccccccc----CCC--------------CCCCcceeEEEecCCceeeCCCCCCHHhHh
Q 016265          151 AGVVVKVGTQVKEFKEGDEVYGDINEKAL----EGP--------------KQFGSLAEYTAVEERLLAPKPKNLDFVQAA  212 (392)
Q Consensus       151 ~G~V~~vG~~v~~~~vGdrV~~~~~~~~~----~~~--------------~~~G~~a~~~~v~~~~~~~iP~~l~~~~aa  212 (392)
                      .++|++  |.+.++.+|.||+++.+....    -+.              ...-.|-+|.++..+..+.    -+.+..-
T Consensus        38 fA~Vve--S~~~~i~vGerlyGy~P~ashl~l~p~~v~~~~f~d~s~hR~~l~~~YN~Y~r~~~d~~y~----~~~e~~~  111 (314)
T PF11017_consen   38 FATVVE--SRHPGIAVGERLYGYFPMASHLVLEPGKVSPGGFRDVSPHRAGLPPIYNQYLRVSADPAYD----PEREDWQ  111 (314)
T ss_pred             EEEEEe--eCCCCccCccEEEeeccccceeEEeccccCCCccccChhhhCcCchhhhceeecCCCcccC----cchhHHH
Confidence            367776  889999999999997652111    000              0112344555544433221    1223333


Q ss_pred             ccchhH-HHHHHHHH---hcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcC-CcEEEeCCC
Q 016265          213 GLPLAI-ETAYEGLE---RTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLG-ADLAIDYTK  287 (392)
Q Consensus       213 ~l~~~~-~ta~~al~---~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G-~~~vi~~~~  287 (392)
                      ++.-++ .|.|..-+   ..+.-..+.|+|..|++-.++..+.+++...+...++...|....++.+.+| .|.++.|++
T Consensus       112 ~LlrPLf~Tsfll~d~l~~~~~~ga~~vvl~SASSKTA~glA~~L~~~~~~~~~vglTS~~N~~Fve~lg~Yd~V~~Yd~  191 (314)
T PF11017_consen  112 MLLRPLFITSFLLDDFLFDNDFFGAAQVVLSSASSKTAIGLAYCLKKQRGPPKVVGLTSARNVAFVESLGCYDEVLTYDD  191 (314)
T ss_pred             HHHHHHHHHHHHHHHHhcccccCCccEEEEeccchHHHHHHHHHhhccCCCceEEEEecCcchhhhhccCCceEEeehhh
Confidence            332232 34443222   1223445788999999999999888887223555555556667778999999 688888865


Q ss_pred             CccccC-CCCccEEEecCcc---HHHHHHhcccCC-eEEEEcC
Q 016265          288 DNFEDL-PEKFDVVYDAIGQ---CDRAVKAIKEGG-TVVALTG  325 (392)
Q Consensus       288 ~~~~~~-~~~~D~vid~~G~---~~~~~~~l~~~G-~iv~~g~  325 (392)
                      -+  ++ ...--+++|..|.   ...+.+.++..= ..+.+|.
T Consensus       192 i~--~l~~~~~~v~VDfaG~~~~~~~Lh~~l~d~l~~~~~VG~  232 (314)
T PF11017_consen  192 ID--SLDAPQPVVIVDFAGNGEVLAALHEHLGDNLVYSCLVGA  232 (314)
T ss_pred             hh--hccCCCCEEEEECCCCHHHHHHHHHHHhhhhhEEEEEEc
Confidence            32  22 2345688899984   345555554433 3444443

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=97.14  E-value=0.0073  Score=52.42  Aligned_cols=114  Identities=24%  Similarity=0.275  Sum_probs=75.8

Q ss_pred             HhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHH----HhcCCcEE--EeCCCCcc-ccCCCCcc
Q 016265          226 ERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFL----KSLGADLA--IDYTKDNF-EDLPEKFD  298 (392)
Q Consensus       226 ~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~----~~~G~~~v--i~~~~~~~-~~~~~~~D  298 (392)
                      .+.++++|+.++=+| +| .|..++++|+.--..+++++++++++.+..    ++||.+.+  +..+.... .+.. .+|
T Consensus        28 s~L~~~~g~~l~DIG-aG-tGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~-~~d  104 (187)
T COG2242          28 SKLRPRPGDRLWDIG-AG-TGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDLP-SPD  104 (187)
T ss_pred             HhhCCCCCCEEEEeC-CC-ccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCCC-CCC
Confidence            466889999887777 43 478888888553356899999998887765    46887643  33222221 2222 689


Q ss_pred             EEEecCc-c----HHHHHHhcccCCeEEEEcCCCCCCceEEEEeecHHHHHHHHHHHHCCCc
Q 016265          299 VVYDAIG-Q----CDRAVKAIKEGGTVVALTGAVTPPGFRFVVTSNGEVLKKLNPYLESGKV  355 (392)
Q Consensus       299 ~vid~~G-~----~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~l  355 (392)
                      .+|---| .    ++.++..|++|||+|.-.             ..-+.+..+++++++...
T Consensus       105 aiFIGGg~~i~~ile~~~~~l~~ggrlV~na-------------itlE~~~~a~~~~~~~g~  153 (187)
T COG2242         105 AIFIGGGGNIEEILEAAWERLKPGGRLVANA-------------ITLETLAKALEALEQLGG  153 (187)
T ss_pred             EEEECCCCCHHHHHHHHHHHcCcCCeEEEEe-------------ecHHHHHHHHHHHHHcCC
Confidence            9886533 2    589999999999997432             234555666666666444

>PRK14967 putative methyltransferase; Provisional

Probab=97.12  E-value=0.014  Score=52.88  Aligned_cols=129  Identities=23%  Similarity=0.317  Sum_probs=79.3

Q ss_pred             HHhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCC-eEEEEeCCcccHHHHHh----cCCcE-EEeCCCCccccCCCCcc
Q 016265          225 LERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGA-SRVAATSSTRNLEFLKS----LGADL-AIDYTKDNFEDLPEKFD  298 (392)
Q Consensus       225 l~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~-~vv~~~~~~~~~~~~~~----~G~~~-vi~~~~~~~~~~~~~~D  298 (392)
                      +....++++++||-.| +|. |..++.+++.  ++ +++.++.++..++.+++    .|... +++.+-... ...+.||
T Consensus        29 l~~~~~~~~~~vLDlG-cG~-G~~~~~la~~--~~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~-~~~~~fD  103 (223)
T PRK14967         29 LAAEGLGPGRRVLDLC-TGS-GALAVAAAAA--GAGSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARA-VEFRPFD  103 (223)
T ss_pred             HHhcccCCCCeEEEec-CCH-HHHHHHHHHc--CCCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhh-ccCCCee
Confidence            4455678899999998 665 9999998874  55 78888888877765543    34332 222211111 1134799


Q ss_pred             EEEecCc------------------------------cHHHHHHhcccCCeEEEEcCCCCCCceEEEEeecHHHHHHHHH
Q 016265          299 VVYDAIG------------------------------QCDRAVKAIKEGGTVVALTGAVTPPGFRFVVTSNGEVLKKLNP  348 (392)
Q Consensus       299 ~vid~~G------------------------------~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~~~~~  348 (392)
                      +|+...+                              -+..+.+.|++||+++.+....             ..+.++++
T Consensus       104 ~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~-------------~~~~~~~~  170 (223)
T PRK14967        104 VVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSEL-------------SGVERTLT  170 (223)
T ss_pred             EEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEecc-------------cCHHHHHH
Confidence            9986421                              0245778999999988652211             12345666


Q ss_pred             HHHCCCcccccCCCcccchhhHH
Q 016265          349 YLESGKVKPIIDPKGPFPFSQVV  371 (392)
Q Consensus       349 ~l~~g~l~~~~~~t~~~~l~~~~  371 (392)
                      +++.+.+.......+.+++....
T Consensus       171 ~l~~~g~~~~~~~~~~~~~~~~~  193 (223)
T PRK14967        171 RLSEAGLDAEVVASQWIPFGPVL  193 (223)
T ss_pred             HHHHCCCCeEEEEeeccCccHHH
Confidence            77766665544444556665543

>COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane]

Probab=97.07  E-value=0.0018  Score=56.77  Aligned_cols=73  Identities=16%  Similarity=0.300  Sum_probs=54.0

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcC---CcEEEeCCCCc----ccc----CCCCccEE
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLG---ADLAIDYTKDN----FED----LPEKFDVV  300 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G---~~~vi~~~~~~----~~~----~~~~~D~v  300 (392)
                      -|.+|||+||++|+|+..++-...+ |-+||++-+++++++.++..-   ...+.|..+.+    +.+    .-...+++
T Consensus         4 tgnTiLITGG~sGIGl~lak~f~el-gN~VIi~gR~e~~L~e~~~~~p~~~t~v~Dv~d~~~~~~lvewLkk~~P~lNvl   82 (245)
T COG3967           4 TGNTILITGGASGIGLALAKRFLEL-GNTVIICGRNEERLAEAKAENPEIHTEVCDVADRDSRRELVEWLKKEYPNLNVL   82 (245)
T ss_pred             cCcEEEEeCCcchhhHHHHHHHHHh-CCEEEEecCcHHHHHHHHhcCcchheeeecccchhhHHHHHHHHHhhCCchhee
Confidence            4789999999999999988877775 999999999999999987644   23344543332    111    12357888


Q ss_pred             EecCc
Q 016265          301 YDAIG  305 (392)
Q Consensus       301 id~~G  305 (392)
                      +++.|
T Consensus        83 iNNAG   87 (245)
T COG3967          83 INNAG   87 (245)
T ss_pred             eeccc
Confidence            88887

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=97.05  E-value=0.0041  Score=49.42  Aligned_cols=89  Identities=30%  Similarity=0.408  Sum_probs=61.7

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhc----CCcEEEeCCCCcc---ccCCCCccEEEecC
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSL----GADLAIDYTKDNF---EDLPEKFDVVYDAI  304 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~----G~~~vi~~~~~~~---~~~~~~~D~vid~~  304 (392)
                      ||++||-+| + +.|..++.+++...+++++.++.+++-++.+++.    +...-+.....++   .+..++||+|+...
T Consensus         1 p~~~vLDlG-c-G~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~   78 (112)
T PF12847_consen    1 PGGRVLDLG-C-GTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFLEPFDLVICSG   78 (112)
T ss_dssp             TTCEEEEET-T-TTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTSSCEEEEEECS
T ss_pred             CCCEEEEEc-C-cCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccCCCCCEEEECC
Confidence            688999997 4 4499999999854689999999999888777542    2211111111222   33456799999876


Q ss_pred             -c------c------HHHHHHhcccCCeEEE
Q 016265          305 -G------Q------CDRAVKAIKEGGTVVA  322 (392)
Q Consensus       305 -G------~------~~~~~~~l~~~G~iv~  322 (392)
                       .      .      ++.+.+.|+|||+++.
T Consensus        79 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi  109 (112)
T PF12847_consen   79 FTLHFLLPLDERRRVLERIRRLLKPGGRLVI  109 (112)
T ss_dssp             GSGGGCCHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred             CccccccchhHHHHHHHHHHHhcCCCcEEEE
Confidence             2      1      4678889999999875

...

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=97.00  E-value=0.0011  Score=55.23  Aligned_cols=91  Identities=23%  Similarity=0.326  Sum_probs=57.7

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHHHHhcCCe-EEEEeCCcccHHHH-HhcCCc--EEEeCCCCccccCCCCccEEEecCcc
Q 016265          231 SAGKSILVLNGSGGVGSLVIQLAKQVFGAS-RVAATSSTRNLEFL-KSLGAD--LAIDYTKDNFEDLPEKFDVVYDAIGQ  306 (392)
Q Consensus       231 ~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~-vv~~~~~~~~~~~~-~~~G~~--~vi~~~~~~~~~~~~~~D~vid~~G~  306 (392)
                      -.+.+|+|+| +|++|.+++..+... |++ ++++.++.+|.+.+ +.++..  .++++++  ..+....+|+||+|++.
T Consensus        10 l~~~~vlviG-aGg~ar~v~~~L~~~-g~~~i~i~nRt~~ra~~l~~~~~~~~~~~~~~~~--~~~~~~~~DivI~aT~~   85 (135)
T PF01488_consen   10 LKGKRVLVIG-AGGAARAVAAALAAL-GAKEITIVNRTPERAEALAEEFGGVNIEAIPLED--LEEALQEADIVINATPS   85 (135)
T ss_dssp             GTTSEEEEES-SSHHHHHHHHHHHHT-TSSEEEEEESSHHHHHHHHHHHTGCSEEEEEGGG--HCHHHHTESEEEE-SST
T ss_pred             cCCCEEEEEC-CHHHHHHHHHHHHHc-CCCEEEEEECCHHHHHHHHHHcCccccceeeHHH--HHHHHhhCCeEEEecCC
Confidence            3588999998 899999999988884 887 77778888886655 455322  2333322  22233579999999873


Q ss_pred             -----HHHHHHhcccC-CeEEEEcC
Q 016265          307 -----CDRAVKAIKEG-GTVVALTG  325 (392)
Q Consensus       307 -----~~~~~~~l~~~-G~iv~~g~  325 (392)
                           ....++...+. +.++.++.
T Consensus        86 ~~~~i~~~~~~~~~~~~~~v~Dla~  110 (135)
T PF01488_consen   86 GMPIITEEMLKKASKKLRLVIDLAV  110 (135)
T ss_dssp             TSTSSTHHHHTTTCHHCSEEEES-S
T ss_pred             CCcccCHHHHHHHHhhhhceecccc
Confidence                 13443333322 46666654

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=96.96  E-value=0.008  Score=57.51  Aligned_cols=96  Identities=24%  Similarity=0.312  Sum_probs=66.9

Q ss_pred             HHHhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCC--eEEEEeCCcccHHHHH----hcCCcEEEeCCCCcccc---CC
Q 016265          224 GLERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGA--SRVAATSSTRNLEFLK----SLGADLAIDYTKDNFED---LP  294 (392)
Q Consensus       224 al~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~--~vv~~~~~~~~~~~~~----~~G~~~vi~~~~~~~~~---~~  294 (392)
                      .++...++++++||.+| +| .|..++.+++.. +.  .++.++.+++..+.++    +.|.+.+..... +..+   ..
T Consensus        72 ll~~L~i~~g~~VLDIG-~G-tG~~a~~LA~~~-~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~g-D~~~~~~~~  147 (322)
T PRK13943         72 FMEWVGLDKGMRVLEIG-GG-TGYNAAVMSRVV-GEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCG-DGYYGVPEF  147 (322)
T ss_pred             HHHhcCCCCCCEEEEEe-CC-ccHHHHHHHHhc-CCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeC-Chhhccccc
Confidence            34556788999999998 65 599999999874 53  5888888887665554    466654332211 1111   12


Q ss_pred             CCccEEEecCcc---HHHHHHhcccCCeEEEE
Q 016265          295 EKFDVVYDAIGQ---CDRAVKAIKEGGTVVAL  323 (392)
Q Consensus       295 ~~~D~vid~~G~---~~~~~~~l~~~G~iv~~  323 (392)
                      ..+|+|+.+.|.   .+..++.|++||+++..
T Consensus       148 ~~fD~Ii~~~g~~~ip~~~~~~LkpgG~Lvv~  179 (322)
T PRK13943        148 APYDVIFVTVGVDEVPETWFTQLKEGGRVIVP  179 (322)
T ss_pred             CCccEEEECCchHHhHHHHHHhcCCCCEEEEE
Confidence            469999998772   46788999999998764

>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional

Probab=96.94  E-value=0.0052  Score=62.82  Aligned_cols=79  Identities=23%  Similarity=0.194  Sum_probs=54.6

Q ss_pred             HhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHh---------cCC-----cEE--EeCCC-C
Q 016265          226 ERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKS---------LGA-----DLA--IDYTK-D  288 (392)
Q Consensus       226 ~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~---------~G~-----~~v--i~~~~-~  288 (392)
                      ...+.+.|++|||+||+|++|...++.+.. .|.+|++++++.++++.+.+         .|.     ..+  .|..+ +
T Consensus        73 ~~~~~~~gKvVLVTGATGgIG~aLAr~LLk-~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~e  151 (576)
T PLN03209         73 KELDTKDEDLAFVAGATGKVGSRTVRELLK-LGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPD  151 (576)
T ss_pred             cccccCCCCEEEEECCCCHHHHHHHHHHHH-CCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHH
Confidence            356678899999999999999998887766 49999999998877654321         121     112  23322 1


Q ss_pred             ccccCCCCccEEEecCc
Q 016265          289 NFEDLPEKFDVVYDAIG  305 (392)
Q Consensus       289 ~~~~~~~~~D~vid~~G  305 (392)
                      .+.+..+++|+||.+.|
T Consensus       152 sI~~aLggiDiVVn~AG  168 (576)
T PLN03209        152 QIGPALGNASVVICCIG  168 (576)
T ss_pred             HHHHHhcCCCEEEEccc
Confidence            23333468999999987

>PRK05993 short chain dehydrogenase; Provisional

Probab=96.93  E-value=0.0061  Score=57.02  Aligned_cols=73  Identities=18%  Similarity=0.317  Sum_probs=52.7

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEE-EeCCCCc-c----cc----CCCCccEEE
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLA-IDYTKDN-F----ED----LPEKFDVVY  301 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~v-i~~~~~~-~----~~----~~~~~D~vi  301 (392)
                      .+.+|+|+||+|++|...++.+.. .|++|+++++++++++.+.+.+.+.+ .|..+.. +    .+    ..+.+|++|
T Consensus         3 ~~k~vlItGasggiG~~la~~l~~-~G~~Vi~~~r~~~~~~~l~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~~g~id~li   81 (277)
T PRK05993          3 MKRSILITGCSSGIGAYCARALQS-DGWRVFATCRKEEDVAALEAEGLEAFQLDYAEPESIAALVAQVLELSGGRLDALF   81 (277)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHH-CCCEEEEEECCHHHHHHHHHCCceEEEccCCCHHHHHHHHHHHHHHcCCCccEEE
Confidence            467899999999999998887766 59999999998888877776665432 3443321 1    11    124689999


Q ss_pred             ecCc
Q 016265          302 DAIG  305 (392)
Q Consensus       302 d~~G  305 (392)
                      ++.|
T Consensus        82 ~~Ag   85 (277)
T PRK05993         82 NNGA   85 (277)
T ss_pred             ECCC
Confidence            9875

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=96.93  E-value=0.0022  Score=56.02  Aligned_cols=107  Identities=21%  Similarity=0.263  Sum_probs=76.0

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCCccccCCCCccEEEecCcc----
Q 016265          231 SAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFEDLPEKFDVVYDAIGQ----  306 (392)
Q Consensus       231 ~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~~~~~~~D~vid~~G~----  306 (392)
                      -.|.+|.|+| .|.+|+..++.++. +|++|++.+++..........+...      .++.+.-+..|+|+.+...    
T Consensus        34 l~g~tvgIiG-~G~IG~~vA~~l~~-fG~~V~~~d~~~~~~~~~~~~~~~~------~~l~ell~~aDiv~~~~plt~~T  105 (178)
T PF02826_consen   34 LRGKTVGIIG-YGRIGRAVARRLKA-FGMRVIGYDRSPKPEEGADEFGVEY------VSLDELLAQADIVSLHLPLTPET  105 (178)
T ss_dssp             STTSEEEEES-TSHHHHHHHHHHHH-TT-EEEEEESSCHHHHHHHHTTEEE------SSHHHHHHH-SEEEE-SSSSTTT
T ss_pred             cCCCEEEEEE-EcCCcCeEeeeeec-CCceeEEecccCChhhhccccccee------eehhhhcchhhhhhhhhcccccc
Confidence            3589999998 99999999999998 6999999999877665455555321      1334444568999988651    


Q ss_pred             ---H-HHHHHhcccCCeEEEEcCCCCCCceEEEEeecHHHHHHHHHHHHCCCccc
Q 016265          307 ---C-DRAVKAIKEGGTVVALTGAVTPPGFRFVVTSNGEVLKKLNPYLESGKVKP  357 (392)
Q Consensus       307 ---~-~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~l~~  357 (392)
                         + ...++.|++|..+|.++-..            --+-+.+++.+++|++..
T Consensus       106 ~~li~~~~l~~mk~ga~lvN~aRG~------------~vde~aL~~aL~~g~i~g  148 (178)
T PF02826_consen  106 RGLINAEFLAKMKPGAVLVNVARGE------------LVDEDALLDALESGKIAG  148 (178)
T ss_dssp             TTSBSHHHHHTSTTTEEEEESSSGG------------GB-HHHHHHHHHTTSEEE
T ss_pred             ceeeeeeeeeccccceEEEeccchh------------hhhhhHHHHHHhhccCce
Confidence               1 78899999999988765321            012356788999999873

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>PRK05693 short chain dehydrogenase; Provisional

Probab=96.93  E-value=0.0066  Score=56.57  Aligned_cols=71  Identities=20%  Similarity=0.287  Sum_probs=51.3

Q ss_pred             CeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEE-EeCCCCc-ccc-------CCCCccEEEecC
Q 016265          234 KSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLA-IDYTKDN-FED-------LPEKFDVVYDAI  304 (392)
Q Consensus       234 ~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~v-i~~~~~~-~~~-------~~~~~D~vid~~  304 (392)
                      .++||+||+|++|...++.+.. .|++|++++++.++.+.+.+.+...+ .|..+.. +.+       ..+++|++|++.
T Consensus         2 k~vlItGasggiG~~la~~l~~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~vi~~a   80 (274)
T PRK05693          2 PVVLITGCSSGIGRALADAFKA-AGYEVWATARKAEDVEALAAAGFTAVQLDVNDGAALARLAEELEAEHGGLDVLINNA   80 (274)
T ss_pred             CEEEEecCCChHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHCCCeEEEeeCCCHHHHHHHHHHHHHhcCCCCEEEECC
Confidence            4799999999999998888776 49999999988877777666564432 3543321 111       124689999998


Q ss_pred             c
Q 016265          305 G  305 (392)
Q Consensus       305 G  305 (392)
                      |
T Consensus        81 g   81 (274)
T PRK05693         81 G   81 (274)
T ss_pred             C
Confidence            7

>PRK12742 oxidoreductase; Provisional

Probab=96.93  E-value=0.0078  Score=54.58  Aligned_cols=73  Identities=27%  Similarity=0.369  Sum_probs=47.4

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeC-CcccHHHH-HhcCCcEE-EeCCCCc-ccc---CCCCccEEEecC
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATS-STRNLEFL-KSLGADLA-IDYTKDN-FED---LPEKFDVVYDAI  304 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~-~~~~~~~~-~~~G~~~v-i~~~~~~-~~~---~~~~~D~vid~~  304 (392)
                      .|++|||+||+|++|...++.+.. .|++++++.+ ++++.+.+ .+++...+ .|..+.. +.+   ...++|++|++.
T Consensus         5 ~~k~vlItGasggIG~~~a~~l~~-~G~~v~~~~~~~~~~~~~l~~~~~~~~~~~D~~~~~~~~~~~~~~~~id~li~~a   83 (237)
T PRK12742          5 TGKKVLVLGGSRGIGAAIVRRFVT-DGANVRFTYAGSKDAAERLAQETGATAVQTDSADRDAVIDVVRKSGALDILVVNA   83 (237)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHH-CCCEEEEecCCCHHHHHHHHHHhCCeEEecCCCCHHHHHHHHHHhCCCcEEEECC
Confidence            478999999999999998887776 4998887654 44444443 44554432 2332211 111   124689999987


Q ss_pred             c
Q 016265          305 G  305 (392)
Q Consensus       305 G  305 (392)
                      |
T Consensus        84 g   84 (237)
T PRK12742         84 G   84 (237)
T ss_pred             C
Confidence            6

>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]

Probab=96.92  E-value=0.0028  Score=57.25  Aligned_cols=73  Identities=29%  Similarity=0.424  Sum_probs=54.2

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHH-hcCC----cEEEeCCCC-cc-------ccCCCCcc
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLK-SLGA----DLAIDYTKD-NF-------EDLPEKFD  298 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~-~~G~----~~vi~~~~~-~~-------~~~~~~~D  298 (392)
                      .++.++|+||++|+|.+.++.... .|++++.+.+..+|++.+. +++.    ...+|-.+. ..       .+.-+.+|
T Consensus         5 ~~kv~lITGASSGiG~A~A~~l~~-~G~~vvl~aRR~drL~~la~~~~~~~~~~~~~DVtD~~~~~~~i~~~~~~~g~iD   83 (246)
T COG4221           5 KGKVALITGASSGIGEATARALAE-AGAKVVLAARREERLEALADEIGAGAALALALDVTDRAAVEAAIEALPEEFGRID   83 (246)
T ss_pred             CCcEEEEecCcchHHHHHHHHHHH-CCCeEEEEeccHHHHHHHHHhhccCceEEEeeccCCHHHHHHHHHHHHHhhCccc
Confidence            457899999999999999988877 4999999999999988774 6773    123343332 11       11134699


Q ss_pred             EEEecCc
Q 016265          299 VVYDAIG  305 (392)
Q Consensus       299 ~vid~~G  305 (392)
                      ++++..|
T Consensus        84 iLvNNAG   90 (246)
T COG4221          84 ILVNNAG   90 (246)
T ss_pred             EEEecCC
Confidence            9999988

>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]

Probab=96.76  E-value=0.0053  Score=56.74  Aligned_cols=75  Identities=25%  Similarity=0.386  Sum_probs=51.7

Q ss_pred             CCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHH-hc----CCc-EEE--eCCCCc-ccc----C---
Q 016265          230 FSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLK-SL----GAD-LAI--DYTKDN-FED----L---  293 (392)
Q Consensus       230 ~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~-~~----G~~-~vi--~~~~~~-~~~----~---  293 (392)
                      ...+.+++|+||++|+|...+..... .|.+++.+.++++|++.+. ++    |.. .++  |..+.+ ...    +   
T Consensus         3 ~~~~~~~lITGASsGIG~~~A~~lA~-~g~~liLvaR~~~kL~~la~~l~~~~~v~v~vi~~DLs~~~~~~~l~~~l~~~   81 (265)
T COG0300           3 PMKGKTALITGASSGIGAELAKQLAR-RGYNLILVARREDKLEALAKELEDKTGVEVEVIPADLSDPEALERLEDELKER   81 (265)
T ss_pred             CCCCcEEEEECCCchHHHHHHHHHHH-CCCEEEEEeCcHHHHHHHHHHHHHhhCceEEEEECcCCChhHHHHHHHHHHhc
Confidence            34678999999999999886655444 5999999999999987763 32    322 233  333322 111    1   


Q ss_pred             CCCccEEEecCc
Q 016265          294 PEKFDVVYDAIG  305 (392)
Q Consensus       294 ~~~~D~vid~~G  305 (392)
                      ...+|+.+++.|
T Consensus        82 ~~~IdvLVNNAG   93 (265)
T COG0300          82 GGPIDVLVNNAG   93 (265)
T ss_pred             CCcccEEEECCC
Confidence            236999999987

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=96.76  E-value=0.026  Score=45.38  Aligned_cols=96  Identities=18%  Similarity=0.279  Sum_probs=64.6

Q ss_pred             HhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHH----hcCCcE--EEeCCCCc-cccCCCCcc
Q 016265          226 ERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLK----SLGADL--AIDYTKDN-FEDLPEKFD  298 (392)
Q Consensus       226 ~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~----~~G~~~--vi~~~~~~-~~~~~~~~D  298 (392)
                      ....+.++++|+-+| +|. |..+..+++...+.+++.++.++...+.++    .++...  ++..+-.. .....+.+|
T Consensus        13 ~~~~~~~~~~vldlG-~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D   90 (124)
T TIGR02469        13 SKLRLRPGDVLWDIG-AGS-GSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEPD   90 (124)
T ss_pred             HHcCCCCCCEEEEeC-CCC-CHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCCC
Confidence            445677888999998 655 999999998743467888888888777654    344332  22221111 122345799


Q ss_pred             EEEecCc------cHHHHHHhcccCCeEEEE
Q 016265          299 VVYDAIG------QCDRAVKAIKEGGTVVAL  323 (392)
Q Consensus       299 ~vid~~G------~~~~~~~~l~~~G~iv~~  323 (392)
                      +|+...+      .++.+.+.|++||+++.-
T Consensus        91 ~v~~~~~~~~~~~~l~~~~~~Lk~gG~li~~  121 (124)
T TIGR02469        91 RVFIGGSGGLLQEILEAIWRRLRPGGRIVLN  121 (124)
T ss_pred             EEEECCcchhHHHHHHHHHHHcCCCCEEEEE
Confidence            9997643      257899999999998754

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.75  E-value=0.011  Score=55.14  Aligned_cols=94  Identities=28%  Similarity=0.465  Sum_probs=61.9

Q ss_pred             CCCeEEEEcCCCcHHHH-HHHHHHHhcCCeEEEEeCCcccHHHH----HhcCCcE-EE----eCCCCc-cc-------cC
Q 016265          232 AGKSILVLNGSGGVGSL-VIQLAKQVFGASRVAATSSTRNLEFL----KSLGADL-AI----DYTKDN-FE-------DL  293 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~-aiqlak~~~G~~vv~~~~~~~~~~~~----~~~G~~~-vi----~~~~~~-~~-------~~  293 (392)
                      .|..|+|+||++|+|.+ |-++++.  |++++.+++..++++.+    ++.+... ++    |-.+.+ ..       ..
T Consensus        11 ~~kvVvITGASsGIG~~lA~~la~~--G~~l~lvar~~rrl~~v~~~l~~~~~~~~v~~~~~Dvs~~~~~~~~~~~~~~~   88 (282)
T KOG1205|consen   11 AGKVVLITGASSGIGEALAYELAKR--GAKLVLVARRARRLERVAEELRKLGSLEKVLVLQLDVSDEESVKKFVEWAIRH   88 (282)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHhC--CCceEEeehhhhhHHHHHHHHHHhCCcCccEEEeCccCCHHHHHHHHHHHHHh
Confidence            57899999999999976 5666763  99999999887776655    4455333 22    222211 11       12


Q ss_pred             CCCccEEEecCcc----------------------------HHHHHHhcccC--CeEEEEcCCC
Q 016265          294 PEKFDVVYDAIGQ----------------------------CDRAVKAIKEG--GTVVALTGAV  327 (392)
Q Consensus       294 ~~~~D~vid~~G~----------------------------~~~~~~~l~~~--G~iv~~g~~~  327 (392)
                      -+++|+.++..|-                            ...++..|++.  |+||.++.-.
T Consensus        89 fg~vDvLVNNAG~~~~~~~~~~~~~~~~~~mdtN~~G~V~~Tk~alp~m~~r~~GhIVvisSia  152 (282)
T KOG1205|consen   89 FGRVDVLVNNAGISLVGFLEDTDIEDVRNVMDTNVFGTVYLTKAALPSMKKRNDGHIVVISSIA  152 (282)
T ss_pred             cCCCCEEEecCccccccccccCcHHHHHHHhhhhchhhHHHHHHHHHHhhhcCCCeEEEEeccc
Confidence            3579999998771                            13455666554  9999886543

>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B

Probab=96.75  E-value=0.011  Score=51.32  Aligned_cols=88  Identities=27%  Similarity=0.271  Sum_probs=62.6

Q ss_pred             EEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCCc---cccCCCCccEEEecCcc------
Q 016265          236 ILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDN---FEDLPEKFDVVYDAIGQ------  306 (392)
Q Consensus       236 VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~---~~~~~~~~D~vid~~G~------  306 (392)
                      |+|+||+|.+|...++.+.. .|.+|+++++++++.+.  ..+.+ ++..+-.+   +.+...++|+||.+.|.      
T Consensus         1 I~V~GatG~vG~~l~~~L~~-~~~~V~~~~R~~~~~~~--~~~~~-~~~~d~~d~~~~~~al~~~d~vi~~~~~~~~~~~   76 (183)
T PF13460_consen    1 ILVFGATGFVGRALAKQLLR-RGHEVTALVRSPSKAED--SPGVE-IIQGDLFDPDSVKAALKGADAVIHAAGPPPKDVD   76 (183)
T ss_dssp             EEEETTTSHHHHHHHHHHHH-TTSEEEEEESSGGGHHH--CTTEE-EEESCTTCHHHHHHHHTTSSEEEECCHSTTTHHH
T ss_pred             eEEECCCChHHHHHHHHHHH-CCCEEEEEecCchhccc--ccccc-cceeeehhhhhhhhhhhhcchhhhhhhhhccccc
Confidence            79999999999999999988 59999999999998777  44443 33322222   33334589999999983      


Q ss_pred             -HHHHHHhcccCC--eEEEEcCCC
Q 016265          307 -CDRAVKAIKEGG--TVVALTGAV  327 (392)
Q Consensus       307 -~~~~~~~l~~~G--~iv~~g~~~  327 (392)
                       ....++.++..|  +++.++...
T Consensus        77 ~~~~~~~a~~~~~~~~~v~~s~~~  100 (183)
T PF13460_consen   77 AAKNIIEAAKKAGVKRVVYLSSAG  100 (183)
T ss_dssp             HHHHHHHHHHHTTSSEEEEEEETT
T ss_pred             ccccccccccccccccceeeeccc
Confidence             355666665544  777776544

...

>PRK06182 short chain dehydrogenase; Validated

Probab=96.72  E-value=0.014  Score=54.41  Aligned_cols=73  Identities=25%  Similarity=0.334  Sum_probs=52.0

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcE-EEeCCCCc-ccc-------CCCCccEEEe
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADL-AIDYTKDN-FED-------LPEKFDVVYD  302 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~-vi~~~~~~-~~~-------~~~~~D~vid  302 (392)
                      .+.+++|+|++|++|...++.+.. .|++|+++++++++++.+...+... ..|..+.. +.+       ...++|++|+
T Consensus         2 ~~k~vlItGasggiG~~la~~l~~-~G~~V~~~~r~~~~l~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~~~id~li~   80 (273)
T PRK06182          2 QKKVALVTGASSGIGKATARRLAA-QGYTVYGAARRVDKMEDLASLGVHPLSLDVTDEASIKAAVDTIIAEEGRIDVLVN   80 (273)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHhCCCeEEEeeCCCHHHHHHHHHHHHHhcCCCCEEEE
Confidence            367899999999999998888766 4999999998888776665555432 23433322 111       1247899999


Q ss_pred             cCc
Q 016265          303 AIG  305 (392)
Q Consensus       303 ~~G  305 (392)
                      +.|
T Consensus        81 ~ag   83 (273)
T PRK06182         81 NAG   83 (273)
T ss_pred             CCC
Confidence            987

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=96.71  E-value=0.0044  Score=57.67  Aligned_cols=90  Identities=27%  Similarity=0.370  Sum_probs=70.7

Q ss_pred             CeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHh-cCCc-EEEeCCCCccccCCCCccEEEecC---c---
Q 016265          234 KSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKS-LGAD-LAIDYTKDNFEDLPEKFDVVYDAI---G---  305 (392)
Q Consensus       234 ~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~-~G~~-~vi~~~~~~~~~~~~~~D~vid~~---G---  305 (392)
                      ..|.|+| .|-+|.-++.+|-.+ |++|.+.+.+.+|+..+.. ++.+ +++-....++++...+.|++|.++   |   
T Consensus       169 ~kv~iiG-GGvvgtnaAkiA~gl-gA~Vtild~n~~rl~~ldd~f~~rv~~~~st~~~iee~v~~aDlvIgaVLIpgaka  246 (371)
T COG0686         169 AKVVVLG-GGVVGTNAAKIAIGL-GADVTILDLNIDRLRQLDDLFGGRVHTLYSTPSNIEEAVKKADLVIGAVLIPGAKA  246 (371)
T ss_pred             ccEEEEC-CccccchHHHHHhcc-CCeeEEEecCHHHHhhhhHhhCceeEEEEcCHHHHHHHhhhccEEEEEEEecCCCC
Confidence            3577777 899999999999985 9999999999999999875 4444 333334455666677899999884   3   


Q ss_pred             ---cHHHHHHhcccCCeEEEEcC
Q 016265          306 ---QCDRAVKAIKEGGTVVALTG  325 (392)
Q Consensus       306 ---~~~~~~~~l~~~G~iv~~g~  325 (392)
                         ..++.++.|+||+.+|++..
T Consensus       247 PkLvt~e~vk~MkpGsVivDVAi  269 (371)
T COG0686         247 PKLVTREMVKQMKPGSVIVDVAI  269 (371)
T ss_pred             ceehhHHHHHhcCCCcEEEEEEE
Confidence               25899999999999998843

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=96.66  E-value=0.013  Score=52.43  Aligned_cols=101  Identities=23%  Similarity=0.240  Sum_probs=63.6

Q ss_pred             HHHHHhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCC--eEEEEeCCcccHHHH----HhcCCcEE--EeCCCCccccC
Q 016265          222 YEGLERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGA--SRVAATSSTRNLEFL----KSLGADLA--IDYTKDNFEDL  293 (392)
Q Consensus       222 ~~al~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~--~vv~~~~~~~~~~~~----~~~G~~~v--i~~~~~~~~~~  293 (392)
                      ...++...+++|++||-+|  +|.|..++-+|+.. |.  +|+.++..++-.+.+    +++|.+.+  +..+...-...
T Consensus        62 a~~l~~L~l~pg~~VLeIG--tGsGY~aAlla~lv-g~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~~  138 (209)
T PF01135_consen   62 ARMLEALDLKPGDRVLEIG--TGSGYQAALLAHLV-GPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGWPE  138 (209)
T ss_dssp             HHHHHHTTC-TT-EEEEES---TTSHHHHHHHHHH-STTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTGG
T ss_pred             HHHHHHHhcCCCCEEEEec--CCCcHHHHHHHHhc-CccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhcccc
Confidence            3455677899999999997  45588888888875 64  467777666544443    44565432  22221111112


Q ss_pred             CCCccEEEecCc--c-HHHHHHhcccCCeEEEEcC
Q 016265          294 PEKFDVVYDAIG--Q-CDRAVKAIKEGGTVVALTG  325 (392)
Q Consensus       294 ~~~~D~vid~~G--~-~~~~~~~l~~~G~iv~~g~  325 (392)
                      ...||.++-+.+  . ....++.|++||++|..-.
T Consensus       139 ~apfD~I~v~~a~~~ip~~l~~qL~~gGrLV~pi~  173 (209)
T PF01135_consen  139 EAPFDRIIVTAAVPEIPEALLEQLKPGGRLVAPIG  173 (209)
T ss_dssp             G-SEEEEEESSBBSS--HHHHHTEEEEEEEEEEES
T ss_pred             CCCcCEEEEeeccchHHHHHHHhcCCCcEEEEEEc
Confidence            347999998776  2 4789999999999988533

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=96.55  E-value=0.018  Score=52.51  Aligned_cols=99  Identities=24%  Similarity=0.375  Sum_probs=70.0

Q ss_pred             HhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHh----cCCcEEEeCCCCccccC---CCCcc
Q 016265          226 ERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKS----LGADLAIDYTKDNFEDL---PEKFD  298 (392)
Q Consensus       226 ~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~----~G~~~vi~~~~~~~~~~---~~~~D  298 (392)
                      ......+|++||=.  ++|.|-+|..+++....+++++++.++.-++.+++    .|... +.+-..+..++   ...||
T Consensus        45 ~~~~~~~g~~vLDv--a~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~-i~fv~~dAe~LPf~D~sFD  121 (238)
T COG2226          45 SLLGIKPGDKVLDV--ACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQN-VEFVVGDAENLPFPDNSFD  121 (238)
T ss_pred             HhhCCCCCCEEEEe--cCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccc-eEEEEechhhCCCCCCccC
Confidence            34556689999987  46789999999998644689999999988877754    23221 22222222222   34799


Q ss_pred             EEEecCc---------cHHHHHHhcccCCeEEEEcCCC
Q 016265          299 VVYDAIG---------QCDRAVKAIKEGGTVVALTGAV  327 (392)
Q Consensus       299 ~vid~~G---------~~~~~~~~l~~~G~iv~~g~~~  327 (392)
                      +|.-+.|         .+.++.+.|+|||+++.+....
T Consensus       122 ~vt~~fglrnv~d~~~aL~E~~RVlKpgG~~~vle~~~  159 (238)
T COG2226         122 AVTISFGLRNVTDIDKALKEMYRVLKPGGRLLVLEFSK  159 (238)
T ss_pred             EEEeeehhhcCCCHHHHHHHHHHhhcCCeEEEEEEcCC
Confidence            9988877         1578999999999998875543

>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3

Probab=96.52  E-value=0.02  Score=48.82  Aligned_cols=90  Identities=18%  Similarity=0.242  Sum_probs=62.3

Q ss_pred             CCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCCccccCCCCccEEEecCcc---
Q 016265          230 FSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFEDLPEKFDVVYDAIGQ---  306 (392)
Q Consensus       230 ~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~~~~~~~D~vid~~G~---  306 (392)
                      .-.|++++|.| -|-+|.-.++.++.+ |++|++++..+-+.-.+..-|....      ...+..+..|++|.++|.   
T Consensus        20 ~l~Gk~vvV~G-YG~vG~g~A~~lr~~-Ga~V~V~e~DPi~alqA~~dGf~v~------~~~~a~~~adi~vtaTG~~~v   91 (162)
T PF00670_consen   20 MLAGKRVVVIG-YGKVGKGIARALRGL-GARVTVTEIDPIRALQAAMDGFEVM------TLEEALRDADIFVTATGNKDV   91 (162)
T ss_dssp             --TTSEEEEE---SHHHHHHHHHHHHT-T-EEEEE-SSHHHHHHHHHTT-EEE-------HHHHTTT-SEEEE-SSSSSS
T ss_pred             eeCCCEEEEeC-CCcccHHHHHHHhhC-CCEEEEEECChHHHHHhhhcCcEec------CHHHHHhhCCEEEECCCCccc
Confidence            46799999998 999999999999995 9999999998887777766676432      234445678999999993   


Q ss_pred             -HHHHHHhcccCCeEEEEcCCC
Q 016265          307 -CDRAVKAIKEGGTVVALTGAV  327 (392)
Q Consensus       307 -~~~~~~~l~~~G~iv~~g~~~  327 (392)
                       ..+-++.|+++..+...|...
T Consensus        92 i~~e~~~~mkdgail~n~Gh~d  113 (162)
T PF00670_consen   92 ITGEHFRQMKDGAILANAGHFD  113 (162)
T ss_dssp             B-HHHHHHS-TTEEEEESSSST
T ss_pred             cCHHHHHHhcCCeEEeccCcCc
Confidence             267888899888777776544

3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=96.48  E-value=0.065  Score=48.14  Aligned_cols=98  Identities=21%  Similarity=0.201  Sum_probs=64.6

Q ss_pred             HHHhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcC--CeEEEEeCCcccHHHHHh----cCCcE--EEeCCCCccccCCC
Q 016265          224 GLERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFG--ASRVAATSSTRNLEFLKS----LGADL--AIDYTKDNFEDLPE  295 (392)
Q Consensus       224 al~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G--~~vv~~~~~~~~~~~~~~----~G~~~--vi~~~~~~~~~~~~  295 (392)
                      .++...+++|++||-+|  +|.|..+..+++.. +  .+++.++.+++-.+.+++    .|.+.  ++..+.........
T Consensus        68 ~~~~l~~~~g~~VLdIG--~GsG~~t~~la~~~-~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~~~~  144 (212)
T PRK13942         68 MCELLDLKEGMKVLEIG--TGSGYHAAVVAEIV-GKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYEENA  144 (212)
T ss_pred             HHHHcCCCCcCEEEEEC--CcccHHHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCcCC
Confidence            44566789999999997  45588888888764 4  578888888877666543    45432  22222111111234


Q ss_pred             CccEEEecCc---cHHHHHHhcccCCeEEEEc
Q 016265          296 KFDVVYDAIG---QCDRAVKAIKEGGTVVALT  324 (392)
Q Consensus       296 ~~D~vid~~G---~~~~~~~~l~~~G~iv~~g  324 (392)
                      .||+|+-...   -....++.|++||+++..-
T Consensus       145 ~fD~I~~~~~~~~~~~~l~~~LkpgG~lvi~~  176 (212)
T PRK13942        145 PYDRIYVTAAGPDIPKPLIEQLKDGGIMVIPV  176 (212)
T ss_pred             CcCEEEECCCcccchHHHHHhhCCCcEEEEEE
Confidence            7999875433   2478888999999988753

>PRK08317 hypothetical protein; Provisional

Probab=96.37  E-value=0.042  Score=49.67  Aligned_cols=98  Identities=22%  Similarity=0.284  Sum_probs=65.6

Q ss_pred             HHhcCCCCCCeEEEEcCCCcHHHHHHHHHHHh-cCCeEEEEeCCcccHHHHHhc----CCcE-EEeCCCCccccCCCCcc
Q 016265          225 LERTGFSAGKSILVLNGSGGVGSLVIQLAKQV-FGASRVAATSSTRNLEFLKSL----GADL-AIDYTKDNFEDLPEKFD  298 (392)
Q Consensus       225 l~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~-~G~~vv~~~~~~~~~~~~~~~----G~~~-vi~~~~~~~~~~~~~~D  298 (392)
                      ++...+.++++||-+| +|. |..+..+++.. -+.+++.++.++..++.+++.    +... ++..+..........+|
T Consensus        12 ~~~~~~~~~~~vLdiG-~G~-G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D   89 (241)
T PRK08317         12 FELLAVQPGDRVLDVG-CGP-GNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLPFPDGSFD   89 (241)
T ss_pred             HHHcCCCCCCEEEEeC-CCC-CHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCCCCCCCce
Confidence            4567888999999998 655 88999999873 135788889898888877654    1111 11111111111234689


Q ss_pred             EEEecCc---------cHHHHHHhcccCCeEEEEc
Q 016265          299 VVYDAIG---------QCDRAVKAIKEGGTVVALT  324 (392)
Q Consensus       299 ~vid~~G---------~~~~~~~~l~~~G~iv~~g  324 (392)
                      +|+....         .+..+.++|++||.++...
T Consensus        90 ~v~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~  124 (241)
T PRK08317         90 AVRSDRVLQHLEDPARALAEIARVLRPGGRVVVLD  124 (241)
T ss_pred             EEEEechhhccCCHHHHHHHHHHHhcCCcEEEEEe
Confidence            8885421         2578889999999998764

>PRK07060 short chain dehydrogenase; Provisional

Probab=96.34  E-value=0.015  Score=52.87  Aligned_cols=73  Identities=30%  Similarity=0.413  Sum_probs=50.6

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHH-hcCCcEE-EeCCCCc-ccc---CCCCccEEEecCc
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLK-SLGADLA-IDYTKDN-FED---LPEKFDVVYDAIG  305 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~-~~G~~~v-i~~~~~~-~~~---~~~~~D~vid~~G  305 (392)
                      .+.+++|+|++|++|...++.+.. .|.+++++.++.++.+.+. ..+...+ .|..+.. ..+   ...++|++|++.|
T Consensus         8 ~~~~~lItGa~g~iG~~~a~~l~~-~g~~V~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~d~vi~~ag   86 (245)
T PRK07060          8 SGKSVLVTGASSGIGRACAVALAQ-RGARVVAAARNAAALDRLAGETGCEPLRLDVGDDAAIRAALAAAGAFDGLVNCAG   86 (245)
T ss_pred             CCCEEEEeCCcchHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHHhCCeEEEecCCCHHHHHHHHHHhCCCCEEEECCC
Confidence            568999999999999999998877 5999999888877765554 3443322 2433321 111   1246899999876

>PRK08339 short chain dehydrogenase; Provisional

Probab=96.28  E-value=0.038  Score=51.26  Aligned_cols=42  Identities=24%  Similarity=0.301  Sum_probs=34.8

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHH
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFL  274 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~  274 (392)
                      .|+++||+||++++|.+.++.+.. .|++|++++++.++++.+
T Consensus         7 ~~k~~lItGas~gIG~aia~~l~~-~G~~V~~~~r~~~~~~~~   48 (263)
T PRK08339          7 SGKLAFTTASSKGIGFGVARVLAR-AGADVILLSRNEENLKKA   48 (263)
T ss_pred             CCCEEEEeCCCCcHHHHHHHHHHH-CCCEEEEEeCCHHHHHHH
Confidence            478999999999999998887766 499999998887765544

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=96.27  E-value=0.015  Score=51.46  Aligned_cols=73  Identities=26%  Similarity=0.310  Sum_probs=48.6

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHH-hc----CCcEE-EeCCC-CccccCCCCccEEEecC
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLK-SL----GADLA-IDYTK-DNFEDLPEKFDVVYDAI  304 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~-~~----G~~~v-i~~~~-~~~~~~~~~~D~vid~~  304 (392)
                      .+.+++|+||+|++|...+..+.. .|++++++.++.++.+.+. ++    +.... .+..+ ++..+...++|+||.++
T Consensus        27 ~~~~vlVlGgtG~iG~~~a~~l~~-~g~~V~l~~R~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~diVi~at  105 (194)
T cd01078          27 KGKTAVVLGGTGPVGQRAAVLLAR-EGARVVLVGRDLERAQKAADSLRARFGEGVGAVETSDDAARAAAIKGADVVFAAG  105 (194)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHH-CCCEEEEEcCCHHHHHHHHHHHHhhcCCcEEEeeCCCHHHHHHHHhcCCEEEECC
Confidence            578999999889999887777766 5888888888877765543 22    32211 12221 22223345789999987


Q ss_pred             c
Q 016265          305 G  305 (392)
Q Consensus       305 G  305 (392)
                      .
T Consensus       106 ~  106 (194)
T cd01078         106 A  106 (194)
T ss_pred             C
Confidence            6

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>PRK06139 short chain dehydrogenase; Provisional

Probab=96.26  E-value=0.015  Score=56.02  Aligned_cols=73  Identities=23%  Similarity=0.416  Sum_probs=51.5

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHH----HhcCCcEE---EeCCCCc-ccc-------CCCC
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFL----KSLGADLA---IDYTKDN-FED-------LPEK  296 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~----~~~G~~~v---i~~~~~~-~~~-------~~~~  296 (392)
                      .+++|+|+||+|++|.+.++.+.. .|++++++.+++++++.+    ++.|.+..   .|..+.+ +.+       ..++
T Consensus         6 ~~k~vlITGAs~GIG~aia~~la~-~G~~Vvl~~R~~~~l~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~   84 (330)
T PRK06139          6 HGAVVVITGASSGIGQATAEAFAR-RGARLVLAARDEEALQAVAEECRALGAEVLVVPTDVTDADQVKALATQAASFGGR   84 (330)
T ss_pred             CCCEEEEcCCCCHHHHHHHHHHHH-CCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHhcCC
Confidence            568999999999999998887777 599999999888876543    34565432   2333221 111       1257


Q ss_pred             ccEEEecCc
Q 016265          297 FDVVYDAIG  305 (392)
Q Consensus       297 ~D~vid~~G  305 (392)
                      +|++|++.|
T Consensus        85 iD~lVnnAG   93 (330)
T PRK06139         85 IDVWVNNVG   93 (330)
T ss_pred             CCEEEECCC
Confidence            899999987

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=96.26  E-value=0.029  Score=49.36  Aligned_cols=92  Identities=27%  Similarity=0.391  Sum_probs=60.6

Q ss_pred             CCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHH----hcCCcE--EEeCCCCccccCCCCccEEEec
Q 016265          230 FSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLK----SLGADL--AIDYTKDNFEDLPEKFDVVYDA  303 (392)
Q Consensus       230 ~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~----~~G~~~--vi~~~~~~~~~~~~~~D~vid~  303 (392)
                      ++++.+||-+| + |.|..++.+++...+++++.++.+++..+.++    +.|.+.  ++..+-.++.. .+.+|+|+-.
T Consensus        43 l~~g~~VLDiG-c-GtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~-~~~fDlV~~~  119 (187)
T PRK00107         43 LPGGERVLDVG-S-GAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQ-EEKFDVVTSR  119 (187)
T ss_pred             cCCCCeEEEEc-C-CCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCC-CCCccEEEEc
Confidence            45689999997 4 34777777776544678999999887766654    455443  22222122222 4579999964


Q ss_pred             C-cc----HHHHHHhcccCCeEEEEc
Q 016265          304 I-GQ----CDRAVKAIKEGGTVVALT  324 (392)
Q Consensus       304 ~-G~----~~~~~~~l~~~G~iv~~g  324 (392)
                      . +.    ++.+.++|++||+++.+-
T Consensus       120 ~~~~~~~~l~~~~~~LkpGG~lv~~~  145 (187)
T PRK00107        120 AVASLSDLVELCLPLLKPGGRFLALK  145 (187)
T ss_pred             cccCHHHHHHHHHHhcCCCeEEEEEe
Confidence            2 22    467889999999998773

>PRK08265 short chain dehydrogenase; Provisional

Probab=96.19  E-value=0.047  Score=50.44  Aligned_cols=73  Identities=25%  Similarity=0.255  Sum_probs=48.9

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHH-HhcCCcE-E--EeCCCCc-ccc-------CCCCccE
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFL-KSLGADL-A--IDYTKDN-FED-------LPEKFDV  299 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~-~~~G~~~-v--i~~~~~~-~~~-------~~~~~D~  299 (392)
                      .+.+++|+||+|++|...+..+.. .|++|++++++.++.+.+ ++++... .  .|..+.. +.+       .-+.+|+
T Consensus         5 ~~k~vlItGas~gIG~~ia~~l~~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~id~   83 (261)
T PRK08265          5 AGKVAIVTGGATLIGAAVARALVA-AGARVAIVDIDADNGAAVAASLGERARFIATDITDDAAIERAVATVVARFGRVDI   83 (261)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHHhCCeeEEEEecCCCHHHHHHHHHHHHHHhCCCCE
Confidence            467999999999999998887766 499999999887765544 3445321 2  2332221 111       1246899


Q ss_pred             EEecCc
Q 016265          300 VYDAIG  305 (392)
Q Consensus       300 vid~~G  305 (392)
                      +|.+.|
T Consensus        84 lv~~ag   89 (261)
T PRK08265         84 LVNLAC   89 (261)
T ss_pred             EEECCC
Confidence            998876

>PRK07109 short chain dehydrogenase; Provisional

Probab=96.18  E-value=0.04  Score=53.18  Aligned_cols=73  Identities=18%  Similarity=0.224  Sum_probs=50.0

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHH----HhcCCcEE---EeCCCCc-ccc-------CCCC
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFL----KSLGADLA---IDYTKDN-FED-------LPEK  296 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~----~~~G~~~v---i~~~~~~-~~~-------~~~~  296 (392)
                      .+.+|+|+||+|++|...++.+.. .|++++++.+++++++.+    ++.|....   .|..+.. +.+       .-.+
T Consensus         7 ~~k~vlITGas~gIG~~la~~la~-~G~~Vvl~~R~~~~l~~~~~~l~~~g~~~~~v~~Dv~d~~~v~~~~~~~~~~~g~   85 (334)
T PRK07109          7 GRQVVVITGASAGVGRATARAFAR-RGAKVVLLARGEEGLEALAAEIRAAGGEALAVVADVADAEAVQAAADRAEEELGP   85 (334)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHH-CCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHHHHHHHCCC
Confidence            467999999999999998887766 499999999887766543    34454332   2333321 111       1246


Q ss_pred             ccEEEecCc
Q 016265          297 FDVVYDAIG  305 (392)
Q Consensus       297 ~D~vid~~G  305 (392)
                      +|++|++.|
T Consensus        86 iD~lInnAg   94 (334)
T PRK07109         86 IDTWVNNAM   94 (334)
T ss_pred             CCEEEECCC
Confidence            899999877

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=96.18  E-value=0.085  Score=47.11  Aligned_cols=98  Identities=16%  Similarity=0.101  Sum_probs=64.1

Q ss_pred             HHHhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhc-CCeEEEEeCCcccHHHHH----hcCCc---EEEeCCCCccccCCC
Q 016265          224 GLERTGFSAGKSILVLNGSGGVGSLVIQLAKQVF-GASRVAATSSTRNLEFLK----SLGAD---LAIDYTKDNFEDLPE  295 (392)
Q Consensus       224 al~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~-G~~vv~~~~~~~~~~~~~----~~G~~---~vi~~~~~~~~~~~~  295 (392)
                      .++...+++|++||=+| + |.|..++.+++.+. +.+++.++.+++-.+.++    +.|..   .++..+.........
T Consensus        64 ~~~~l~~~~~~~VLDiG-~-GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~~~  141 (205)
T PRK13944         64 MCELIEPRPGMKILEVG-T-GSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEKHA  141 (205)
T ss_pred             HHHhcCCCCCCEEEEEC-c-CccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCccCC
Confidence            34566788999999997 4 55888888887642 357888888877665554    34532   223322211111234


Q ss_pred             CccEEEecCc--c-HHHHHHhcccCCeEEEE
Q 016265          296 KFDVVYDAIG--Q-CDRAVKAIKEGGTVVAL  323 (392)
Q Consensus       296 ~~D~vid~~G--~-~~~~~~~l~~~G~iv~~  323 (392)
                      .||+|+-+..  . .+.+++.|++||+++..
T Consensus       142 ~fD~Ii~~~~~~~~~~~l~~~L~~gG~lvi~  172 (205)
T PRK13944        142 PFDAIIVTAAASTIPSALVRQLKDGGVLVIP  172 (205)
T ss_pred             CccEEEEccCcchhhHHHHHhcCcCcEEEEE
Confidence            7999986644  2 37888999999998764

>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.18  E-value=0.019  Score=53.47  Aligned_cols=74  Identities=20%  Similarity=0.434  Sum_probs=48.5

Q ss_pred             CCCCCeEEEEcCCCcHHHH-HHHHHHHhcCCeEEEEeCCcc----cHHHHHhcCCc--EEEeCCC-Ccc-------ccCC
Q 016265          230 FSAGKSILVLNGSGGVGSL-VIQLAKQVFGASRVAATSSTR----NLEFLKSLGAD--LAIDYTK-DNF-------EDLP  294 (392)
Q Consensus       230 ~~~g~~VlI~Ga~G~vG~~-aiqlak~~~G~~vv~~~~~~~----~~~~~~~~G~~--~vi~~~~-~~~-------~~~~  294 (392)
                      --.|+.|||+||++|+|.+ |.++||.  |+++++.+.+.+    ..+..++.|-.  .+.|-.+ ++.       ++..
T Consensus        35 ~v~g~~vLITGgg~GlGr~ialefa~r--g~~~vl~Din~~~~~etv~~~~~~g~~~~y~cdis~~eei~~~a~~Vk~e~  112 (300)
T KOG1201|consen   35 SVSGEIVLITGGGSGLGRLIALEFAKR--GAKLVLWDINKQGNEETVKEIRKIGEAKAYTCDISDREEIYRLAKKVKKEV  112 (300)
T ss_pred             hccCCEEEEeCCCchHHHHHHHHHHHh--CCeEEEEeccccchHHHHHHHHhcCceeEEEecCCCHHHHHHHHHHHHHhc
Confidence            3479999999999999976 6667774  888878776444    23444555622  2334332 222       1224


Q ss_pred             CCccEEEecCc
Q 016265          295 EKFDVVYDAIG  305 (392)
Q Consensus       295 ~~~D~vid~~G  305 (392)
                      +.+|++++..|
T Consensus       113 G~V~ILVNNAG  123 (300)
T KOG1201|consen  113 GDVDILVNNAG  123 (300)
T ss_pred             CCceEEEeccc
Confidence            57999999988

>PRK06057 short chain dehydrogenase; Provisional

Probab=96.18  E-value=0.021  Score=52.52  Aligned_cols=73  Identities=18%  Similarity=0.307  Sum_probs=49.7

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHH-HhcCCc-EEEeCCCCc-ccc-------CCCCccEEE
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFL-KSLGAD-LAIDYTKDN-FED-------LPEKFDVVY  301 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~-~~~G~~-~vi~~~~~~-~~~-------~~~~~D~vi  301 (392)
                      .|++|+|+||+|++|...++.... .|++++++++++.+.+.. ++++.. ...|..+.. +.+       ...++|++|
T Consensus         6 ~~~~vlItGasggIG~~~a~~l~~-~G~~v~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi   84 (255)
T PRK06057          6 AGRVAVITGGGSGIGLATARRLAA-EGATVVVGDIDPEAGKAAADEVGGLFVPTDVTDEDAVNALFDTAAETYGSVDIAF   84 (255)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHH-cCCEEEEEeCCHHHHHHHHHHcCCcEEEeeCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence            578999999999999998888776 599999998877765544 344432 222433321 111       124689999


Q ss_pred             ecCc
Q 016265          302 DAIG  305 (392)
Q Consensus       302 d~~G  305 (392)
                      .+.|
T Consensus        85 ~~ag   88 (255)
T PRK06057         85 NNAG   88 (255)
T ss_pred             ECCC
Confidence            8876

>PRK05872 short chain dehydrogenase; Provisional

Probab=96.15  E-value=0.016  Score=54.85  Aligned_cols=73  Identities=25%  Similarity=0.304  Sum_probs=50.7

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHH-HhcCC--cE-E--EeCCCCc-ccc-------CCCCc
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFL-KSLGA--DL-A--IDYTKDN-FED-------LPEKF  297 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~-~~~G~--~~-v--i~~~~~~-~~~-------~~~~~  297 (392)
                      .|+++||+||+|++|...++.+.. .|++++++.+++++++.+ ++++.  +. .  .|..+.. ..+       ..+++
T Consensus         8 ~gk~vlItGas~gIG~~ia~~l~~-~G~~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i   86 (296)
T PRK05872          8 AGKVVVVTGAARGIGAELARRLHA-RGAKLALVDLEEAELAALAAELGGDDRVLTVVADVTDLAAMQAAAEEAVERFGGI   86 (296)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHHhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence            578999999999999999888877 599999999888776554 44542  11 1  2333211 111       12468


Q ss_pred             cEEEecCc
Q 016265          298 DVVYDAIG  305 (392)
Q Consensus       298 D~vid~~G  305 (392)
                      |++|++.|
T Consensus        87 d~vI~nAG   94 (296)
T PRK05872         87 DVVVANAG   94 (296)
T ss_pred             CEEEECCC
Confidence            99999987

>PRK07574 formate dehydrogenase; Provisional

Probab=96.14  E-value=0.046  Score=53.60  Aligned_cols=106  Identities=20%  Similarity=0.204  Sum_probs=73.2

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCCccccCCCCccEEEecCcc-----
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFEDLPEKFDVVYDAIGQ-----  306 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~~~~~~~D~vid~~G~-----  306 (392)
                      .|.+|.|+| .|.+|+..++.++. +|.++++.++.....+..+.+|...     ..++.++....|+|+-+...     
T Consensus       191 ~gktVGIvG-~G~IG~~vA~~l~~-fG~~V~~~dr~~~~~~~~~~~g~~~-----~~~l~ell~~aDvV~l~lPlt~~T~  263 (385)
T PRK07574        191 EGMTVGIVG-AGRIGLAVLRRLKP-FDVKLHYTDRHRLPEEVEQELGLTY-----HVSFDSLVSVCDVVTIHCPLHPETE  263 (385)
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHh-CCCEEEEECCCCCchhhHhhcCcee-----cCCHHHHhhcCCEEEEcCCCCHHHH
Confidence            578999998 99999999999998 6999999988654444445555421     12345555678999988761     


Q ss_pred             --H-HHHHHhcccCCeEEEEcCCCCCCceEEEEeecHHHHHHHHHHHHCCCcc
Q 016265          307 --C-DRAVKAIKEGGTVVALTGAVTPPGFRFVVTSNGEVLKKLNPYLESGKVK  356 (392)
Q Consensus       307 --~-~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~l~  356 (392)
                        + ...+..|++|..+|.++...            --+-+.+.+.+++|++.
T Consensus       264 ~li~~~~l~~mk~ga~lIN~aRG~------------iVDe~AL~~AL~sG~i~  304 (385)
T PRK07574        264 HLFDADVLSRMKRGSYLVNTARGK------------IVDRDAVVRALESGHLA  304 (385)
T ss_pred             HHhCHHHHhcCCCCcEEEECCCCc------------hhhHHHHHHHHHhCCcc
Confidence              1 56788899998888765322            11234555666666654

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=96.13  E-value=0.012  Score=52.97  Aligned_cols=87  Identities=33%  Similarity=0.474  Sum_probs=63.7

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHh----cCCcEEEeCCCCccccC---CCCccEEEec
Q 016265          231 SAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKS----LGADLAIDYTKDNFEDL---PEKFDVVYDA  303 (392)
Q Consensus       231 ~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~----~G~~~vi~~~~~~~~~~---~~~~D~vid~  303 (392)
                      -+|.+||=.| +|+ |+++.-+|+.  |++|..++.+++-.+.++.    -|..  +||.....+++   .+.||+|+..
T Consensus        58 l~g~~vLDvG-CGg-G~Lse~mAr~--Ga~VtgiD~se~~I~~Ak~ha~e~gv~--i~y~~~~~edl~~~~~~FDvV~cm  131 (243)
T COG2227          58 LPGLRVLDVG-CGG-GILSEPLARL--GASVTGIDASEKPIEVAKLHALESGVN--IDYRQATVEDLASAGGQFDVVTCM  131 (243)
T ss_pred             CCCCeEEEec-CCc-cHhhHHHHHC--CCeeEEecCChHHHHHHHHhhhhcccc--ccchhhhHHHHHhcCCCccEEEEh
Confidence            4788898887 443 7999999984  9999999999998888763    2332  56766554443   4689999854


Q ss_pred             -----Ccc----HHHHHHhcccCCeEEEE
Q 016265          304 -----IGQ----CDRAVKAIKEGGTVVAL  323 (392)
Q Consensus       304 -----~G~----~~~~~~~l~~~G~iv~~  323 (392)
                           +..    +..+.++++|+|.++.-
T Consensus       132 EVlEHv~dp~~~~~~c~~lvkP~G~lf~S  160 (243)
T COG2227         132 EVLEHVPDPESFLRACAKLVKPGGILFLS  160 (243)
T ss_pred             hHHHccCCHHHHHHHHHHHcCCCcEEEEe
Confidence                 221    46799999999997643

>PRK06500 short chain dehydrogenase; Provisional

Probab=96.11  E-value=0.057  Score=49.18  Aligned_cols=73  Identities=23%  Similarity=0.293  Sum_probs=48.9

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHH-HhcCCcE-EE--eCCCCc-c-------ccCCCCccE
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFL-KSLGADL-AI--DYTKDN-F-------EDLPEKFDV  299 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~-~~~G~~~-vi--~~~~~~-~-------~~~~~~~D~  299 (392)
                      +|.+|+|+||+|++|...++.+.. .|++++++.+++++.+.+ +++|... .+  |..+.. .       .+...++|+
T Consensus         5 ~~k~vlItGasg~iG~~la~~l~~-~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~   83 (249)
T PRK06500          5 QGKTALITGGTSGIGLETARQFLA-EGARVAITGRDPASLEAARAELGESALVIRADAGDVAAQKALAQALAEAFGRLDA   83 (249)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHH-CCCEEEEecCCHHHHHHHHHHhCCceEEEEecCCCHHHHHHHHHHHHHHhCCCCE
Confidence            467999999999999998887766 599998888876665444 4555432 22  222211 1       111246899


Q ss_pred             EEecCc
Q 016265          300 VYDAIG  305 (392)
Q Consensus       300 vid~~G  305 (392)
                      +|.+.|
T Consensus        84 vi~~ag   89 (249)
T PRK06500         84 VFINAG   89 (249)
T ss_pred             EEECCC
Confidence            998876

>CHL00194 ycf39 Ycf39; Provisional

Probab=96.10  E-value=0.025  Score=53.99  Aligned_cols=90  Identities=21%  Similarity=0.278  Sum_probs=60.8

Q ss_pred             eEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEE-eCCC-CccccCCCCccEEEecCcc------
Q 016265          235 SILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAI-DYTK-DNFEDLPEKFDVVYDAIGQ------  306 (392)
Q Consensus       235 ~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi-~~~~-~~~~~~~~~~D~vid~~G~------  306 (392)
                      +|+|+||+|-+|...+..+.. .|.+|++++++.++...+...|.+.+. |..+ ..+.+.-+++|+||.+++.      
T Consensus         2 kIlVtGatG~iG~~lv~~Ll~-~g~~V~~l~R~~~~~~~l~~~~v~~v~~Dl~d~~~l~~al~g~d~Vi~~~~~~~~~~~   80 (317)
T CHL00194          2 SLLVIGATGTLGRQIVRQALD-EGYQVRCLVRNLRKASFLKEWGAELVYGDLSLPETLPPSFKGVTAIIDASTSRPSDLY   80 (317)
T ss_pred             EEEEECCCcHHHHHHHHHHHH-CCCeEEEEEcChHHhhhHhhcCCEEEECCCCCHHHHHHHHCCCCEEEECCCCCCCCcc
Confidence            699999999999998887777 499999999887666555555654332 3322 2233445689999998651      


Q ss_pred             ---------HHHHHHhcccCC--eEEEEcC
Q 016265          307 ---------CDRAVKAIKEGG--TVVALTG  325 (392)
Q Consensus       307 ---------~~~~~~~l~~~G--~iv~~g~  325 (392)
                               ...++++++..|  +++.++.
T Consensus        81 ~~~~~~~~~~~~l~~aa~~~gvkr~I~~Ss  110 (317)
T CHL00194         81 NAKQIDWDGKLALIEAAKAAKIKRFIFFSI  110 (317)
T ss_pred             chhhhhHHHHHHHHHHHHHcCCCEEEEecc
Confidence                     123455555444  7887765

>PLN03139 formate dehydrogenase; Provisional

Probab=96.10  E-value=0.043  Score=53.83  Aligned_cols=106  Identities=20%  Similarity=0.267  Sum_probs=74.1

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCCccccCCCCccEEEecCcc-----
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFEDLPEKFDVVYDAIGQ-----  306 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~~~~~~~D~vid~~G~-----  306 (392)
                      .|.+|.|+| .|.+|...++.++. +|.++++.+++....+..++.|+..+     .++.++....|+|+.++..     
T Consensus       198 ~gktVGIVG-~G~IG~~vA~~L~a-fG~~V~~~d~~~~~~~~~~~~g~~~~-----~~l~ell~~sDvV~l~lPlt~~T~  270 (386)
T PLN03139        198 EGKTVGTVG-AGRIGRLLLQRLKP-FNCNLLYHDRLKMDPELEKETGAKFE-----EDLDAMLPKCDVVVINTPLTEKTR  270 (386)
T ss_pred             CCCEEEEEe-ecHHHHHHHHHHHH-CCCEEEEECCCCcchhhHhhcCceec-----CCHHHHHhhCCEEEEeCCCCHHHH
Confidence            578999998 99999999999998 69999888876555555555664321     2345555678999988751     


Q ss_pred             --H-HHHHHhcccCCeEEEEcCCCCCCceEEEEeecHHHHHHHHHHHHCCCcc
Q 016265          307 --C-DRAVKAIKEGGTVVALTGAVTPPGFRFVVTSNGEVLKKLNPYLESGKVK  356 (392)
Q Consensus       307 --~-~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~l~  356 (392)
                        + ...++.|++|..+|.++-..            --+-+.+.+.+++|++.
T Consensus       271 ~li~~~~l~~mk~ga~lIN~aRG~------------iVDe~AL~~AL~sG~l~  311 (386)
T PLN03139        271 GMFNKERIAKMKKGVLIVNNARGA------------IMDTQAVADACSSGHIG  311 (386)
T ss_pred             HHhCHHHHhhCCCCeEEEECCCCc------------hhhHHHHHHHHHcCCce
Confidence              1 56888999998888765322            11234566667777664

>COG2910 Putative NADH-flavin reductase [General function prediction only]

Probab=96.09  E-value=0.021  Score=49.28  Aligned_cols=90  Identities=21%  Similarity=0.273  Sum_probs=62.4

Q ss_pred             eEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCC--cEEEeCCCCccccCCCCccEEEecCcc------
Q 016265          235 SILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGA--DLAIDYTKDNFEDLPEKFDVVYDAIGQ------  306 (392)
Q Consensus       235 ~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~--~~vi~~~~~~~~~~~~~~D~vid~~G~------  306 (392)
                      .|.|+||+|-+|...++=|+. .|-.|.++++++.|....+..-+  ..++|...  ..+...|+|+||++.|.      
T Consensus         2 KIaiIgAsG~~Gs~i~~EA~~-RGHeVTAivRn~~K~~~~~~~~i~q~Difd~~~--~a~~l~g~DaVIsA~~~~~~~~~   78 (211)
T COG2910           2 KIAIIGASGKAGSRILKEALK-RGHEVTAIVRNASKLAARQGVTILQKDIFDLTS--LASDLAGHDAVISAFGAGASDND   78 (211)
T ss_pred             eEEEEecCchhHHHHHHHHHh-CCCeeEEEEeChHhccccccceeecccccChhh--hHhhhcCCceEEEeccCCCCChh
Confidence            588999999999999999998 59999999999988765422110  11222211  23345699999999872      


Q ss_pred             ------HHHHHHhcccC--CeEEEEcCCC
Q 016265          307 ------CDRAVKAIKEG--GTVVALTGAV  327 (392)
Q Consensus       307 ------~~~~~~~l~~~--G~iv~~g~~~  327 (392)
                            .+.++..|+.-  -|+..+|+..
T Consensus        79 ~~~~k~~~~li~~l~~agv~RllVVGGAG  107 (211)
T COG2910          79 ELHSKSIEALIEALKGAGVPRLLVVGGAG  107 (211)
T ss_pred             HHHHHHHHHHHHHHhhcCCeeEEEEcCcc
Confidence                  13466666663  4788887765

>PRK06949 short chain dehydrogenase; Provisional

Probab=96.05  E-value=0.026  Score=51.86  Aligned_cols=43  Identities=35%  Similarity=0.395  Sum_probs=36.1

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHH
Q 016265          231 SAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFL  274 (392)
Q Consensus       231 ~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~  274 (392)
                      -.+++|+|+||+|++|...+..+.. .|++|+++.+++++++.+
T Consensus         7 ~~~k~ilItGasg~IG~~~a~~l~~-~G~~Vi~~~r~~~~~~~~   49 (258)
T PRK06949          7 LEGKVALVTGASSGLGARFAQVLAQ-AGAKVVLASRRVERLKEL   49 (258)
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHH
Confidence            4578999999999999998888877 599999998887776544

>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.02  E-value=0.07  Score=48.62  Aligned_cols=42  Identities=24%  Similarity=0.287  Sum_probs=34.6

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHH
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFL  274 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~  274 (392)
                      .+.++||+||+|++|...++.+.. .|.+|+++++++++.+.+
T Consensus         4 ~~~~vlItGasg~iG~~l~~~l~~-~G~~V~~~~r~~~~~~~~   45 (251)
T PRK07231          4 EGKVAIVTGASSGIGEGIARRFAA-EGARVVVTDRNEEAAERV   45 (251)
T ss_pred             CCcEEEEECCCChHHHHHHHHHHH-CCCEEEEEeCCHHHHHHH
Confidence            467999999999999988877766 499999999988766554

>PRK12367 short chain dehydrogenase; Provisional

Probab=95.97  E-value=0.03  Score=51.55  Aligned_cols=72  Identities=22%  Similarity=0.250  Sum_probs=46.0

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCc-ccHHHHHhcCCcEE--EeCCCC-ccccCCCCccEEEecCc
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSST-RNLEFLKSLGADLA--IDYTKD-NFEDLPEKFDVVYDAIG  305 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~-~~~~~~~~~G~~~v--i~~~~~-~~~~~~~~~D~vid~~G  305 (392)
                      .|.+++|+||+|++|...++.... .|++|+++.++. ++.+... .+....  .|..+. ...+..+++|++|++.|
T Consensus        13 ~~k~~lITGas~gIG~ala~~l~~-~G~~Vi~~~r~~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~iDilVnnAG   88 (245)
T PRK12367         13 QGKRIGITGASGALGKALTKAFRA-KGAKVIGLTHSKINNSESND-ESPNEWIKWECGKEESLDKQLASLDVLILNHG   88 (245)
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHH-CCCEEEEEECCchhhhhhhc-cCCCeEEEeeCCCHHHHHHhcCCCCEEEECCc
Confidence            368999999999999998877666 499999888765 2222211 111122  233222 12233457999999976

>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=95.96  E-value=0.0078  Score=60.53  Aligned_cols=83  Identities=19%  Similarity=0.270  Sum_probs=58.9

Q ss_pred             hcCCCCCCeEE----EEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCCccccCCCCccEEEe
Q 016265          227 RTGFSAGKSIL----VLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFEDLPEKFDVVYD  302 (392)
Q Consensus       227 ~~~~~~g~~Vl----I~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~~~~~~~D~vid  302 (392)
                      ..+.++|+.+|    |+||+|++|.+++|+++. .|++|+.+...+.+....+..+.+.                 +++|
T Consensus        28 l~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~-~g~~v~~~~~~~~~~~~~~~~~~~~-----------------~~~d   89 (450)
T PRK08261         28 LRRYRPGQPLLDGPVLVGGAGRLAEALAALLAG-LGYDVVANNDGGLTWAAGWGDRFGA-----------------LVFD   89 (450)
T ss_pred             ccCCCCCCCCCCCceEEccCchhHHHHHHHHhh-CCCeeeecCccccccccCcCCcccE-----------------EEEE
Confidence            46778999998    999999999999999999 4999988766555332222222221                 3444


Q ss_pred             cCc------------cHHHHHHhcccCCeEEEEcCCC
Q 016265          303 AIG------------QCDRAVKAIKEGGTVVALTGAV  327 (392)
Q Consensus       303 ~~G------------~~~~~~~~l~~~G~iv~~g~~~  327 (392)
                      ..+            .+...++.|.++|+|+.++...
T Consensus        90 ~~~~~~~~~l~~~~~~~~~~l~~l~~~griv~i~s~~  126 (450)
T PRK08261         90 ATGITDPADLKALYEFFHPVLRSLAPCGRVVVLGRPP  126 (450)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHhccCCCEEEEEcccc
Confidence            443            1356778889999999987654

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=95.94  E-value=0.12  Score=46.42  Aligned_cols=99  Identities=22%  Similarity=0.201  Sum_probs=64.1

Q ss_pred             HHHHhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCC--eEEEEeCCcccHHHHH----hcCCcE--EEeCCCCccccCC
Q 016265          223 EGLERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGA--SRVAATSSTRNLEFLK----SLGADL--AIDYTKDNFEDLP  294 (392)
Q Consensus       223 ~al~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~--~vv~~~~~~~~~~~~~----~~G~~~--vi~~~~~~~~~~~  294 (392)
                      ..++...+++|++||-+|  +|.|..++.+++.. +.  +++.++.+++-.+.++    ++|.+.  ++..+........
T Consensus        68 ~~~~~l~~~~~~~VLDiG--~GsG~~a~~la~~~-~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~~  144 (215)
T TIGR00080        68 MMTELLELKPGMKVLEIG--TGSGYQAAVLAEIV-GRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEPL  144 (215)
T ss_pred             HHHHHhCCCCcCEEEEEC--CCccHHHHHHHHHh-CCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCccc
Confidence            344566789999999997  45588888888873 43  5888888877666654    345432  2221111111123


Q ss_pred             CCccEEEecCc---cHHHHHHhcccCCeEEEEc
Q 016265          295 EKFDVVYDAIG---QCDRAVKAIKEGGTVVALT  324 (392)
Q Consensus       295 ~~~D~vid~~G---~~~~~~~~l~~~G~iv~~g  324 (392)
                      ..||+|+-...   -.+.+.+.|++||+++..-
T Consensus       145 ~~fD~Ii~~~~~~~~~~~~~~~L~~gG~lv~~~  177 (215)
T TIGR00080       145 APYDRIYVTAAGPKIPEALIDQLKEGGILVMPV  177 (215)
T ss_pred             CCCCEEEEcCCcccccHHHHHhcCcCcEEEEEE
Confidence            47998885432   3477889999999987653

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional

Probab=95.92  E-value=0.034  Score=51.37  Aligned_cols=73  Identities=23%  Similarity=0.335  Sum_probs=48.7

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHH-hcCCc-EEE--eCCCCc-ccc-------CCCCccE
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLK-SLGAD-LAI--DYTKDN-FED-------LPEKFDV  299 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~-~~G~~-~vi--~~~~~~-~~~-------~~~~~D~  299 (392)
                      .|.+++|+||+|++|...++.+.. .|++|+++++++++.+.+. +++.. ..+  |..+.. ...       ..+.+|+
T Consensus         5 ~~k~vlVtGas~gIG~~ia~~l~~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~   83 (263)
T PRK06200          5 HGQVALITGGGSGIGRALVERFLA-EGARVAVLERSAEKLASLRQRFGDHVLVVEGDVTSYADNQRAVDQTVDAFGKLDC   83 (263)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHHhCCcceEEEccCCCHHHHHHHHHHHHHhcCCCCE
Confidence            478999999999999998887766 4999999998877766554 33321 122  222211 111       1236888


Q ss_pred             EEecCc
Q 016265          300 VYDAIG  305 (392)
Q Consensus       300 vid~~G  305 (392)
                      +|++.|
T Consensus        84 li~~ag   89 (263)
T PRK06200         84 FVGNAG   89 (263)
T ss_pred             EEECCC
Confidence            888866

>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.90  E-value=0.025  Score=57.57  Aligned_cols=71  Identities=18%  Similarity=0.276  Sum_probs=53.2

Q ss_pred             CCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCCccccCCCCccEEEecCc
Q 016265          230 FSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFEDLPEKFDVVYDAIG  305 (392)
Q Consensus       230 ~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~~~~~~~D~vid~~G  305 (392)
                      +.+|++|+|+| .|..|++++.+++. .|++|++.+..+.+.+.++++|+..+ .... . .+....+|+||.+.|
T Consensus         9 ~~~~~~v~V~G-~G~sG~aa~~~L~~-~G~~v~~~D~~~~~~~~l~~~g~~~~-~~~~-~-~~~l~~~D~VV~SpG   79 (488)
T PRK03369          9 LLPGAPVLVAG-AGVTGRAVLAALTR-FGARPTVCDDDPDALRPHAERGVATV-STSD-A-VQQIADYALVVTSPG   79 (488)
T ss_pred             ccCCCeEEEEc-CCHHHHHHHHHHHH-CCCEEEEEcCCHHHHHHHHhCCCEEE-cCcc-h-HhHhhcCCEEEECCC
Confidence            55789999998 99999999999998 59999998876666666777887443 2211 1 122246799999988

>PRK06484 short chain dehydrogenase; Validated

Probab=95.90  E-value=0.069  Score=54.69  Aligned_cols=74  Identities=19%  Similarity=0.305  Sum_probs=50.3

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHH-hcCCcE---EEeCCCCc-ccc-------CCCCcc
Q 016265          231 SAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLK-SLGADL---AIDYTKDN-FED-------LPEKFD  298 (392)
Q Consensus       231 ~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~-~~G~~~---vi~~~~~~-~~~-------~~~~~D  298 (392)
                      ..|.++||+||++++|...++.... .|++|+++.++.++++.+. +++...   ..|..+.. ..+       ..+.+|
T Consensus       267 ~~~k~~lItGas~gIG~~~a~~l~~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id  345 (520)
T PRK06484        267 ESPRVVAITGGARGIGRAVADRFAA-AGDRLLIIDRDAEGAKKLAEALGDEHLSVQADITDEAAVESAFAQIQARWGRLD  345 (520)
T ss_pred             cCCCEEEEECCCcHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHHhCCceeEEEccCCCHHHHHHHHHHHHHHcCCCC
Confidence            3578999999999999997776666 4999999998877776654 345332   22333221 111       124689


Q ss_pred             EEEecCc
Q 016265          299 VVYDAIG  305 (392)
Q Consensus       299 ~vid~~G  305 (392)
                      ++|.+.|
T Consensus       346 ~li~nAg  352 (520)
T PRK06484        346 VLVNNAG  352 (520)
T ss_pred             EEEECCC
Confidence            9999876

>PRK07832 short chain dehydrogenase; Provisional

Probab=95.89  E-value=0.069  Score=49.64  Aligned_cols=70  Identities=20%  Similarity=0.301  Sum_probs=46.3

Q ss_pred             eEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHH----HhcCCcE----EEeCCCCc-cc-------cCCCCcc
Q 016265          235 SILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFL----KSLGADL----AIDYTKDN-FE-------DLPEKFD  298 (392)
Q Consensus       235 ~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~----~~~G~~~----vi~~~~~~-~~-------~~~~~~D  298 (392)
                      +++|+||+|++|...++.+.. .|++++++.+++++++.+    +..+...    ..|..+.. ..       +...++|
T Consensus         2 ~vlItGas~giG~~la~~la~-~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id   80 (272)
T PRK07832          2 RCFVTGAASGIGRATALRLAA-QGAELFLTDRDADGLAQTVADARALGGTVPEHRALDISDYDAVAAFAADIHAAHGSMD   80 (272)
T ss_pred             EEEEeCCCCHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEeeCCCHHHHHHHHHHHHHhcCCCC
Confidence            689999999999998887766 499988888776654433    3334321    23433321 11       1134689


Q ss_pred             EEEecCc
Q 016265          299 VVYDAIG  305 (392)
Q Consensus       299 ~vid~~G  305 (392)
                      ++|.+.|
T Consensus        81 ~lv~~ag   87 (272)
T PRK07832         81 VVMNIAG   87 (272)
T ss_pred             EEEECCC
Confidence            9999887

>PRK07806 short chain dehydrogenase; Provisional

Probab=95.89  E-value=0.12  Score=47.19  Aligned_cols=36  Identities=28%  Similarity=0.363  Sum_probs=30.0

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCc
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSST  268 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~  268 (392)
                      .|.+++|+||+|++|...+..+.. .|.+|+++.++.
T Consensus         5 ~~k~vlItGasggiG~~l~~~l~~-~G~~V~~~~r~~   40 (248)
T PRK07806          5 PGKTALVTGSSRGIGADTAKILAG-AGAHVVVNYRQK   40 (248)
T ss_pred             CCcEEEEECCCCcHHHHHHHHHHH-CCCEEEEEeCCc
Confidence            467999999999999998887766 499988887754

>PRK08177 short chain dehydrogenase; Provisional

Probab=95.89  E-value=0.038  Score=49.81  Aligned_cols=71  Identities=18%  Similarity=0.302  Sum_probs=47.1

Q ss_pred             CeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEE--eCCCCc-ccc----C-CCCccEEEecCc
Q 016265          234 KSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAI--DYTKDN-FED----L-PEKFDVVYDAIG  305 (392)
Q Consensus       234 ~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi--~~~~~~-~~~----~-~~~~D~vid~~G  305 (392)
                      .+|+|+|++|++|...+..... .|++|+++++++++.+.+++++...++  |..+.. +.+    . .+++|++|.+.|
T Consensus         2 k~vlItG~sg~iG~~la~~l~~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~id~vi~~ag   80 (225)
T PRK08177          2 RTALIIGASRGLGLGLVDRLLE-RGWQVTATVRGPQQDTALQALPGVHIEKLDMNDPASLDQLLQRLQGQRFDLLFVNAG   80 (225)
T ss_pred             CEEEEeCCCchHHHHHHHHHHh-CCCEEEEEeCCCcchHHHHhccccceEEcCCCCHHHHHHHHHHhhcCCCCEEEEcCc
Confidence            4799999999999997776666 499999999887777666555422222  322211 111    1 236899998765

>PRK05866 short chain dehydrogenase; Provisional

Probab=95.88  E-value=0.037  Score=52.27  Aligned_cols=73  Identities=25%  Similarity=0.374  Sum_probs=48.9

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHH----hcCCcE-EE--eCCCCc-ccc-------CCCC
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLK----SLGADL-AI--DYTKDN-FED-------LPEK  296 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~----~~G~~~-vi--~~~~~~-~~~-------~~~~  296 (392)
                      .+.+++|+||+|++|...++.+.. .|++|++++++.++++.+.    +.|.+. .+  |..+.. +.+       ..++
T Consensus        39 ~~k~vlItGasggIG~~la~~La~-~G~~Vi~~~R~~~~l~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~g~  117 (293)
T PRK05866         39 TGKRILLTGASSGIGEAAAEQFAR-RGATVVAVARREDLLDAVADRITRAGGDAMAVPCDLSDLDAVDALVADVEKRIGG  117 (293)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHH-CCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            467899999999999998887766 5999999998877665442    233322 22  322211 111       1247


Q ss_pred             ccEEEecCc
Q 016265          297 FDVVYDAIG  305 (392)
Q Consensus       297 ~D~vid~~G  305 (392)
                      +|++|.+.|
T Consensus       118 id~li~~AG  126 (293)
T PRK05866        118 VDILINNAG  126 (293)
T ss_pred             CCEEEECCC
Confidence            899999976

>PRK07831 short chain dehydrogenase; Provisional

Probab=95.87  E-value=0.036  Score=51.15  Aligned_cols=75  Identities=29%  Similarity=0.409  Sum_probs=49.7

Q ss_pred             CCCCCeEEEEcCCC-cHHHHHHHHHHHhcCCeEEEEeCCcccHHHHH----h-cCCcEE--E--eCCCCc-ccc------
Q 016265          230 FSAGKSILVLNGSG-GVGSLVIQLAKQVFGASRVAATSSTRNLEFLK----S-LGADLA--I--DYTKDN-FED------  292 (392)
Q Consensus       230 ~~~g~~VlI~Ga~G-~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~----~-~G~~~v--i--~~~~~~-~~~------  292 (392)
                      +..+++++|+||+| ++|.+.++.+.. .|++|+++++++++++...    + +|...+  +  |..+.+ +.+      
T Consensus        14 ~~~~k~vlItG~sg~gIG~~ia~~l~~-~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~   92 (262)
T PRK07831         14 LLAGKVVLVTAAAGTGIGSATARRALE-EGARVVISDIHERRLGETADELAAELGLGRVEAVVCDVTSEAQVDALIDAAV   92 (262)
T ss_pred             ccCCCEEEEECCCcccHHHHHHHHHHH-cCCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEEccCCCHHHHHHHHHHHH
Confidence            34578999999886 899999888877 5999888888776655432    2 453322  2  333221 111      


Q ss_pred             -CCCCccEEEecCc
Q 016265          293 -LPEKFDVVYDAIG  305 (392)
Q Consensus       293 -~~~~~D~vid~~G  305 (392)
                       ..+++|++|.+.|
T Consensus        93 ~~~g~id~li~~ag  106 (262)
T PRK07831         93 ERLGRLDVLVNNAG  106 (262)
T ss_pred             HHcCCCCEEEECCC
Confidence             1246899999987

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=95.85  E-value=0.026  Score=53.23  Aligned_cols=140  Identities=23%  Similarity=0.273  Sum_probs=77.4

Q ss_pred             CCCCCEEEecccccccCCCCCCCcceeEEEecCCceeeCCCCCCHHhHhccchhHHHHHHHHHhcCCCCCCeEEEEcCCC
Q 016265          164 FKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLERTGFSAGKSILVLNGSG  243 (392)
Q Consensus       164 ~~vGdrV~~~~~~~~~~~~~~~G~~a~~~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~al~~~~~~~g~~VlI~Ga~G  243 (392)
                      +++|++.+..+            .|.+|-.-+...++.+.+++.|-..-=-...+  +...|++. .++|++||=.| + 
T Consensus       108 ~~vg~~~~I~P------------~w~~~~~~~~~~~I~idPg~AFGTG~H~TT~l--cl~~l~~~-~~~g~~vLDvG-~-  170 (295)
T PF06325_consen  108 IRVGDRLVIVP------------SWEEYPEPPDEIVIEIDPGMAFGTGHHPTTRL--CLELLEKY-VKPGKRVLDVG-C-  170 (295)
T ss_dssp             EEECTTEEEEE------------TT----SSTTSEEEEESTTSSS-SSHCHHHHH--HHHHHHHH-SSTTSEEEEES---
T ss_pred             EEECCcEEEEC------------CCcccCCCCCcEEEEECCCCcccCCCCHHHHH--HHHHHHHh-ccCCCEEEEeC-C-
Confidence            56788666643            35566333456677787777654332111111  22333333 67889999887 4 


Q ss_pred             cHHHHHHHHHHHhcCC-eEEEEeCCcccHHHHHh----cCCc-EEEeCCCCccccCCCCccEEEecCc--c----HHHHH
Q 016265          244 GVGSLVIQLAKQVFGA-SRVAATSSTRNLEFLKS----LGAD-LAIDYTKDNFEDLPEKFDVVYDAIG--Q----CDRAV  311 (392)
Q Consensus       244 ~vG~~aiqlak~~~G~-~vv~~~~~~~~~~~~~~----~G~~-~vi~~~~~~~~~~~~~~D~vid~~G--~----~~~~~  311 (392)
                      |.|.+++..+|.  |+ +|++++..+.-.+.+++    .|.. .+.-....+.  ..+.||+|+-..-  .    .....
T Consensus       171 GSGILaiaA~kl--GA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~~~~~~--~~~~~dlvvANI~~~vL~~l~~~~~  246 (295)
T PF06325_consen  171 GSGILAIAAAKL--GAKKVVAIDIDPLAVEAARENAELNGVEDRIEVSLSEDL--VEGKFDLVVANILADVLLELAPDIA  246 (295)
T ss_dssp             TTSHHHHHHHHT--TBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEESCTSCT--CCS-EEEEEEES-HHHHHHHHHHCH
T ss_pred             cHHHHHHHHHHc--CCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEEEeccc--ccccCCEEEECCCHHHHHHHHHHHH
Confidence            458888888874  77 56677776665554433    3422 2211111111  1368999997653  1    35677


Q ss_pred             HhcccCCeEEEEc
Q 016265          312 KAIKEGGTVVALT  324 (392)
Q Consensus       312 ~~l~~~G~iv~~g  324 (392)
                      ++++++|.++.-|
T Consensus       247 ~~l~~~G~lIlSG  259 (295)
T PF06325_consen  247 SLLKPGGYLILSG  259 (295)
T ss_dssp             HHEEEEEEEEEEE
T ss_pred             HhhCCCCEEEEcc
Confidence            7899999998665

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=95.83  E-value=0.041  Score=46.49  Aligned_cols=100  Identities=22%  Similarity=0.308  Sum_probs=60.6

Q ss_pred             HHHHhcCC-CCCCeEEEEcCCCcHHHHHHHHHHHhcC-CeEEEEeCCcccHHH-HHhcCCcEEEeCCCCccccCCCCccE
Q 016265          223 EGLERTGF-SAGKSILVLNGSGGVGSLVIQLAKQVFG-ASRVAATSSTRNLEF-LKSLGADLAIDYTKDNFEDLPEKFDV  299 (392)
Q Consensus       223 ~al~~~~~-~~g~~VlI~Ga~G~vG~~aiqlak~~~G-~~vv~~~~~~~~~~~-~~~~G~~~vi~~~~~~~~~~~~~~D~  299 (392)
                      .++++... ..+.+|+|+| +|.+|...++.... .| .++++.+++.++.+. +++++... +.....+..+..+++|+
T Consensus         8 ~a~~~~~~~~~~~~i~iiG-~G~~g~~~a~~l~~-~g~~~v~v~~r~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~Dv   84 (155)
T cd01065           8 RALEEAGIELKGKKVLILG-AGGAARAVAYALAE-LGAAKIVIVNRTLEKAKALAERFGELG-IAIAYLDLEELLAEADL   84 (155)
T ss_pred             HHHHhhCCCCCCCEEEEEC-CcHHHHHHHHHHHH-CCCCEEEEEcCCHHHHHHHHHHHhhcc-cceeecchhhccccCCE
Confidence            34444443 4578899998 69999998887776 45 567777887776654 44555421 11111123333568999


Q ss_pred             EEecCcc-H------HHHHHhcccCCeEEEEcC
Q 016265          300 VYDAIGQ-C------DRAVKAIKEGGTVVALTG  325 (392)
Q Consensus       300 vid~~G~-~------~~~~~~l~~~G~iv~~g~  325 (392)
                      |+.|++. .      ......++++..++.++.
T Consensus        85 vi~~~~~~~~~~~~~~~~~~~~~~~~~v~D~~~  117 (155)
T cd01065          85 IINTTPVGMKPGDELPLPPSLLKPGGVVYDVVY  117 (155)
T ss_pred             EEeCcCCCCCCCCCCCCCHHHcCCCCEEEEcCc
Confidence            9999862 1      111234566666666643

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]

Probab=95.83  E-value=0.026  Score=51.53  Aligned_cols=87  Identities=25%  Similarity=0.356  Sum_probs=63.0

Q ss_pred             CCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhc---------CCcEEEeCCCCccccCCCCccEEEec
Q 016265          233 GKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSL---------GADLAIDYTKDNFEDLPEKFDVVYDA  303 (392)
Q Consensus       233 g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~---------G~~~vi~~~~~~~~~~~~~~D~vid~  303 (392)
                      |.+||=.| +|+ |++..-|||.  |+.|..++.+++-.+.+++-         +..+.+.+...+.+...+.||.|+..
T Consensus        90 g~~ilDvG-CGg-GLLSepLArl--ga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~~~fDaVvcs  165 (282)
T KOG1270|consen   90 GMKILDVG-CGG-GLLSEPLARL--GAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLTGKFDAVVCS  165 (282)
T ss_pred             CceEEEec-cCc-cccchhhHhh--CCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcccccceeeeH
Confidence            47777776 555 9999999984  99999999998877766432         23344566666666666679998743


Q ss_pred             -----C----ccHHHHHHhcccCCeEEEE
Q 016265          304 -----I----GQCDRAVKAIKEGGTVVAL  323 (392)
Q Consensus       304 -----~----G~~~~~~~~l~~~G~iv~~  323 (392)
                           +    .-++.+++.++|+|+++.-
T Consensus       166 evleHV~dp~~~l~~l~~~lkP~G~lfit  194 (282)
T KOG1270|consen  166 EVLEHVKDPQEFLNCLSALLKPNGRLFIT  194 (282)
T ss_pred             HHHHHHhCHHHHHHHHHHHhCCCCceEee
Confidence                 1    1247888999999998754

>PRK06128 oxidoreductase; Provisional

Probab=95.83  E-value=0.1  Score=49.32  Aligned_cols=35  Identities=17%  Similarity=0.230  Sum_probs=28.9

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCC
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSS  267 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~  267 (392)
                      .|.++||+||+|++|...+..... .|++|+++..+
T Consensus        54 ~~k~vlITGas~gIG~~~a~~l~~-~G~~V~i~~~~   88 (300)
T PRK06128         54 QGRKALITGADSGIGRATAIAFAR-EGADIALNYLP   88 (300)
T ss_pred             CCCEEEEecCCCcHHHHHHHHHHH-cCCEEEEEeCC
Confidence            478999999999999998877766 49998877653

>PRK07814 short chain dehydrogenase; Provisional

Probab=95.82  E-value=0.034  Score=51.44  Aligned_cols=73  Identities=16%  Similarity=0.278  Sum_probs=49.0

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHH----hcCCc-EE--EeCCCCc-cc----c---CCCC
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLK----SLGAD-LA--IDYTKDN-FE----D---LPEK  296 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~----~~G~~-~v--i~~~~~~-~~----~---~~~~  296 (392)
                      ++.++||+||+|++|...++.+.. .|++|+++++++++.+.+.    ..+.. ++  .|..+.. ..    +   ..++
T Consensus         9 ~~~~vlItGasggIG~~~a~~l~~-~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   87 (263)
T PRK07814          9 DDQVAVVTGAGRGLGAAIALAFAE-AGADVLIAARTESQLDEVAEQIRAAGRRAHVVAADLAHPEATAGLAGQAVEAFGR   87 (263)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            578999999999999998887776 5999999998877655432    22322 22  2333322 11    1   1247


Q ss_pred             ccEEEecCc
Q 016265          297 FDVVYDAIG  305 (392)
Q Consensus       297 ~D~vid~~G  305 (392)
                      +|++|++.|
T Consensus        88 id~vi~~Ag   96 (263)
T PRK07814         88 LDIVVNNVG   96 (263)
T ss_pred             CCEEEECCC
Confidence            899999876

>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=95.80  E-value=0.073  Score=53.51  Aligned_cols=73  Identities=25%  Similarity=0.354  Sum_probs=48.1

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCc--ccHH-HHHhcCCcE-EEeCCCCc-ccc-------CCCCccE
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSST--RNLE-FLKSLGADL-AIDYTKDN-FED-------LPEKFDV  299 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~--~~~~-~~~~~G~~~-vi~~~~~~-~~~-------~~~~~D~  299 (392)
                      +|.+++|+||+|++|...++.+.. .|++++++++..  ++++ ...+++... .+|..+.. ..+       ...++|+
T Consensus       209 ~g~~vlItGasggIG~~la~~l~~-~Ga~vi~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~id~  287 (450)
T PRK08261        209 AGKVALVTGAARGIGAAIAEVLAR-DGAHVVCLDVPAAGEALAAVANRVGGTALALDITAPDAPARIAEHLAERHGGLDI  287 (450)
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHH-CCCEEEEEeCCccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHHHHhCCCCCE
Confidence            578999999999999998887776 599998887643  2222 234455432 23443322 111       1236899


Q ss_pred             EEecCc
Q 016265          300 VYDAIG  305 (392)
Q Consensus       300 vid~~G  305 (392)
                      +|++.|
T Consensus       288 vi~~AG  293 (450)
T PRK08261        288 VVHNAG  293 (450)
T ss_pred             EEECCC
Confidence            999987

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=95.79  E-value=0.025  Score=59.62  Aligned_cols=73  Identities=18%  Similarity=0.357  Sum_probs=55.7

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcc---------------------cHHHHHhcCCcEEEeCCC---
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTR---------------------NLEFLKSLGADLAIDYTK---  287 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~---------------------~~~~~~~~G~~~vi~~~~---  287 (392)
                      .|++|+|+| +|+.|+.+++.++. .|.+|++....+.                     +.++++++|.+..++..-   
T Consensus       309 ~~kkVaIIG-~GpaGl~aA~~L~~-~G~~Vtv~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~~  386 (639)
T PRK12809        309 RSEKVAVIG-AGPAGLGCADILAR-AGVQVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGIDFHLNCEIGRD  386 (639)
T ss_pred             CCCEEEEEC-cCHHHHHHHHHHHH-cCCcEEEEeCCCCCCCeeeccCCcccCCHHHHHHHHHHHHHCCeEEEcCCccCCc
Confidence            489999998 99999999999888 5999888876542                     456678889877666432   


Q ss_pred             CccccCCCCccEEEecCcc
Q 016265          288 DNFEDLPEKFDVVYDAIGQ  306 (392)
Q Consensus       288 ~~~~~~~~~~D~vid~~G~  306 (392)
                      ..+.++..++|.||.++|.
T Consensus       387 ~~~~~l~~~~DaV~latGa  405 (639)
T PRK12809        387 ITFSDLTSEYDAVFIGVGT  405 (639)
T ss_pred             CCHHHHHhcCCEEEEeCCC
Confidence            1233445679999999984

>PRK07825 short chain dehydrogenase; Provisional

Probab=95.77  E-value=0.043  Score=50.96  Aligned_cols=72  Identities=22%  Similarity=0.271  Sum_probs=48.9

Q ss_pred             CCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHH-HhcCCcEEE--eCCCCc-c-------ccCCCCccEEE
Q 016265          233 GKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFL-KSLGADLAI--DYTKDN-F-------EDLPEKFDVVY  301 (392)
Q Consensus       233 g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~-~~~G~~~vi--~~~~~~-~-------~~~~~~~D~vi  301 (392)
                      |.+++|+||+|++|...++.+.. .|++++++++++++++.+ ++++...++  |..+.+ +       .+...++|++|
T Consensus         5 ~~~ilVtGasggiG~~la~~l~~-~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~li   83 (273)
T PRK07825          5 GKVVAITGGARGIGLATARALAA-LGARVAIGDLDEALAKETAAELGLVVGGPLDVTDPASFAAFLDAVEADLGPIDVLV   83 (273)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHH-CCCEEEEEECCHHHHHHHHHHhccceEEEccCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence            67999999999999998876666 499999988888776554 344422222  333321 1       11124789999


Q ss_pred             ecCc
Q 016265          302 DAIG  305 (392)
Q Consensus       302 d~~G  305 (392)
                      .+.|
T Consensus        84 ~~ag   87 (273)
T PRK07825         84 NNAG   87 (273)
T ss_pred             ECCC
Confidence            9876

>PRK12939 short chain dehydrogenase; Provisional

Probab=95.74  E-value=0.1  Score=47.53  Aligned_cols=73  Identities=22%  Similarity=0.281  Sum_probs=48.2

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHH----HhcCCcE-EE--eCCCCc-ccc-------CCCC
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFL----KSLGADL-AI--DYTKDN-FED-------LPEK  296 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~----~~~G~~~-vi--~~~~~~-~~~-------~~~~  296 (392)
                      .+.+++|+||+|++|...+..... .|++++++.+++++.+.+    ++.+... ++  |..+.. ..+       ..++
T Consensus         6 ~~~~vlItGa~g~iG~~la~~l~~-~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~   84 (250)
T PRK12939          6 AGKRALVTGAARGLGAAFAEALAE-AGATVAFNDGLAAEARELAAALEAAGGRAHAIAADLADPASVQRFFDAAAAALGG   84 (250)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHH-cCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            478999999999999998887766 499998888777655433    2234321 22  332221 111       1247


Q ss_pred             ccEEEecCc
Q 016265          297 FDVVYDAIG  305 (392)
Q Consensus       297 ~D~vid~~G  305 (392)
                      +|++|.+.|
T Consensus        85 id~vi~~ag   93 (250)
T PRK12939         85 LDGLVNNAG   93 (250)
T ss_pred             CCEEEECCC
Confidence            899999977

>smart00846 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain

Probab=95.72  E-value=0.17  Score=42.77  Aligned_cols=107  Identities=20%  Similarity=0.280  Sum_probs=62.8

Q ss_pred             eEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeC--CcccHHHHHh----cC---CcE-------EEeCCC------Ccccc
Q 016265          235 SILVLNGSGGVGSLVIQLAKQVFGASRVAATS--STRNLEFLKS----LG---ADL-------AIDYTK------DNFED  292 (392)
Q Consensus       235 ~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~--~~~~~~~~~~----~G---~~~-------vi~~~~------~~~~~  292 (392)
                      +|.|+| .|.+|...++.+....+.+++++..  +.+.+.++-+    .|   .+.       +++...      .+..+
T Consensus         2 kv~I~G-~GriGr~v~~~~~~~~~~~lvai~d~~~~~~~a~ll~~Ds~hg~~~~~v~~~~~~l~i~g~~i~~~~~~~p~~   80 (149)
T smart00846        2 KVGING-FGRIGRLVLRALLERPDIEVVAINDLTDPETLAHLLKYDSVHGRFPGEVEVDEDGLIVNGKKIKVLAERDPAN   80 (149)
T ss_pred             EEEEEC-cCHHHHHHHHHHHhCCCCEEEEeecCCCHHHHHHHhcccCCCCCCCCcEEEeCCEEEECCEEEEEEecCChHH
Confidence            588998 7999999888876534666666543  3334444432    22   111       111110      01111


Q ss_pred             C---CCCccEEEecCcc---HHHHHHhcccCCeEEEEcCCCCCCceEEEEeecHHH
Q 016265          293 L---PEKFDVVYDAIGQ---CDRAVKAIKEGGTVVALTGAVTPPGFRFVVTSNGEV  342 (392)
Q Consensus       293 ~---~~~~D~vid~~G~---~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~  342 (392)
                      +   ..++|+|+||+|.   .+.+...+..|-+-|.++.+.......+++..+.+.
T Consensus        81 ~~w~~~gvDiVie~tG~f~~~~~~~~hl~~GakkViisap~~~~~~t~V~GvN~~~  136 (149)
T smart00846       81 LPWKELGVDIVVECTGKFTTREKASAHLKAGAKKVIISAPAKDADKTFVYGVNHDE  136 (149)
T ss_pred             CcccccCCeEEEeccccccchHHHHHHHHcCCCEEEeCCCCCCCCceEEEeechHH
Confidence            1   1278999999994   356667888888888888876544335665544443

GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold.

>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed

Probab=95.68  E-value=0.034  Score=52.18  Aligned_cols=91  Identities=22%  Similarity=0.304  Sum_probs=58.3

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHHHHhcC-CeEEEEeCCcccHHHHH-hcCCcEEEeCCCCccccCCCCccEEEecCcc-H
Q 016265          231 SAGKSILVLNGSGGVGSLVIQLAKQVFG-ASRVAATSSTRNLEFLK-SLGADLAIDYTKDNFEDLPEKFDVVYDAIGQ-C  307 (392)
Q Consensus       231 ~~g~~VlI~Ga~G~vG~~aiqlak~~~G-~~vv~~~~~~~~~~~~~-~~G~~~vi~~~~~~~~~~~~~~D~vid~~G~-~  307 (392)
                      ..+.+|+|+| +|++|.+++..++. .| .+++++.++.++.+.+. +++....+.. ..+..+....+|+||+|+.. +
T Consensus       121 ~~~k~vlVlG-aGg~a~ai~~aL~~-~g~~~V~v~~R~~~~a~~l~~~~~~~~~~~~-~~~~~~~~~~~DivInaTp~g~  197 (278)
T PRK00258        121 LKGKRILILG-AGGAARAVILPLLD-LGVAEITIVNRTVERAEELAKLFGALGKAEL-DLELQEELADFDLIINATSAGM  197 (278)
T ss_pred             CCCCEEEEEc-CcHHHHHHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHhhhccceee-cccchhccccCCEEEECCcCCC
Confidence            4567899998 79999999988887 48 67888888888766553 4432110111 11122334578999999751 1


Q ss_pred             -------HHHHHhcccCCeEEEEc
Q 016265          308 -------DRAVKAIKEGGTVVALT  324 (392)
Q Consensus       308 -------~~~~~~l~~~G~iv~~g  324 (392)
                             ......+.++..++++.
T Consensus       198 ~~~~~~~~~~~~~l~~~~~v~Div  221 (278)
T PRK00258        198 SGELPLPPLPLSLLRPGTIVYDMI  221 (278)
T ss_pred             CCCCCCCCCCHHHcCCCCEEEEee
Confidence                   12235667776666653

>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional

Probab=95.68  E-value=0.12  Score=47.39  Aligned_cols=73  Identities=18%  Similarity=0.286  Sum_probs=48.0

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHH----HhcCCcEE-E--eCCCCc-ccc-------CCCC
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFL----KSLGADLA-I--DYTKDN-FED-------LPEK  296 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~----~~~G~~~v-i--~~~~~~-~~~-------~~~~  296 (392)
                      .|.++||+||+|++|...++.+.. .|++++++.+++++.+.+    ++.|.... +  |..+.. +.+       ...+
T Consensus         6 ~~~~vlItGasg~iG~~la~~l~~-~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~   84 (262)
T PRK13394          6 NGKTAVVTGAASGIGKEIALELAR-AGAAVAIADLNQDGANAVADEINKAGGKAIGVAMDVTNEDAVNAGIDKVAERFGS   84 (262)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHH-CCCeEEEEeCChHHHHHHHHHHHhcCceEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence            478999999999999988887766 599999888877654433    33454322 2  222211 111       1235


Q ss_pred             ccEEEecCc
Q 016265          297 FDVVYDAIG  305 (392)
Q Consensus       297 ~D~vid~~G  305 (392)
                      +|++|.+.|
T Consensus        85 ~d~vi~~ag   93 (262)
T PRK13394         85 VDILVSNAG   93 (262)
T ss_pred             CCEEEECCc
Confidence            899999876

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=95.67  E-value=0.13  Score=45.13  Aligned_cols=114  Identities=23%  Similarity=0.256  Sum_probs=71.3

Q ss_pred             HhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHh----cCCcE--EEeCCCCccccCCCCccE
Q 016265          226 ERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKS----LGADL--AIDYTKDNFEDLPEKFDV  299 (392)
Q Consensus       226 ~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~----~G~~~--vi~~~~~~~~~~~~~~D~  299 (392)
                      ....+.++++||=+| +| .|..++.+++...+.+++.++.+++.++.+++    ++...  ++..+.  .....+.+|+
T Consensus        25 ~~l~~~~~~~vLDiG-~G-~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~--~~~~~~~~D~  100 (187)
T PRK08287         25 SKLELHRAKHLIDVG-AG-TGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEA--PIELPGKADA  100 (187)
T ss_pred             HhcCCCCCCEEEEEC-Cc-CCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCc--hhhcCcCCCE
Confidence            455677889998887 44 48888888876324688899998887766643    44322  222111  1123457999


Q ss_pred             EEecC--cc----HHHHHHhcccCCeEEEEcCCCCCCceEEEEeecHHHHHHHHHHHHCCCcc
Q 016265          300 VYDAI--GQ----CDRAVKAIKEGGTVVALTGAVTPPGFRFVVTSNGEVLKKLNPYLESGKVK  356 (392)
Q Consensus       300 vid~~--G~----~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~l~  356 (392)
                      |+...  +.    ++.+.+.|++||+++...             .......++.+++++..+.
T Consensus       101 v~~~~~~~~~~~~l~~~~~~Lk~gG~lv~~~-------------~~~~~~~~~~~~l~~~g~~  150 (187)
T PRK08287        101 IFIGGSGGNLTAIIDWSLAHLHPGGRLVLTF-------------ILLENLHSALAHLEKCGVS  150 (187)
T ss_pred             EEECCCccCHHHHHHHHHHhcCCCeEEEEEE-------------ecHhhHHHHHHHHHHCCCC
Confidence            98643  22    467888999999986531             1233445666677664443

>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1

Probab=95.67  E-value=0.014  Score=50.39  Aligned_cols=90  Identities=29%  Similarity=0.443  Sum_probs=63.5

Q ss_pred             CeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEe-CCCC--------------------cccc
Q 016265          234 KSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAID-YTKD--------------------NFED  292 (392)
Q Consensus       234 ~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~-~~~~--------------------~~~~  292 (392)
                      -+|+|+| +|.+|+.|+.+++.+ |+++++.+...++++..+..++..+.. +.+.                    .+.+
T Consensus        21 ~~vvv~G-~G~vg~gA~~~~~~l-Ga~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~   98 (168)
T PF01262_consen   21 AKVVVTG-AGRVGQGAAEIAKGL-GAEVVVPDERPERLRQLESLGAYFIEVDYEDHLERKDFDKADYYEHPESYESNFAE   98 (168)
T ss_dssp             -EEEEES-TSHHHHHHHHHHHHT-T-EEEEEESSHHHHHHHHHTTTEESEETTTTTTTSB-CCHHHCHHHCCHHHHHHHH
T ss_pred             eEEEEEC-CCHHHHHHHHHHhHC-CCEEEeccCCHHHHHhhhcccCceEEEcccccccccccchhhhhHHHHHhHHHHHH
Confidence            6789998 999999999999995 999999999988888888877654433 1110                    0111


Q ss_pred             CCCCccEEEecC---cc------HHHHHHhcccCCeEEEEcC
Q 016265          293 LPEKFDVVYDAI---GQ------CDRAVKAIKEGGTVVALTG  325 (392)
Q Consensus       293 ~~~~~D~vid~~---G~------~~~~~~~l~~~G~iv~~g~  325 (392)
                      ....+|++|.+.   +.      .+..++.|+++..|++++.
T Consensus        99 ~i~~~d~vI~~~~~~~~~~P~lvt~~~~~~m~~gsvIvDis~  140 (168)
T PF01262_consen   99 FIAPADIVIGNGLYWGKRAPRLVTEEMVKSMKPGSVIVDISC  140 (168)
T ss_dssp             HHHH-SEEEEHHHBTTSS---SBEHHHHHTSSTTEEEEETTG
T ss_pred             HHhhCcEEeeecccCCCCCCEEEEhHHhhccCCCceEEEEEe
Confidence            123579998652   21      3788999999888888854

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....

>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase

Probab=95.66  E-value=0.038  Score=51.06  Aligned_cols=44  Identities=25%  Similarity=0.388  Sum_probs=36.1

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHh
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKS  276 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~  276 (392)
                      .+.+++|+||+|++|...++.+.. .|++|+++.++.++++.+++
T Consensus         4 ~~k~vlItGas~gIG~~ia~~l~~-~G~~V~~~~r~~~~~~~l~~   47 (262)
T TIGR03325         4 KGEVVLVTGGASGLGRAIVDRFVA-EGARVAVLDKSAAGLQELEA   47 (262)
T ss_pred             CCcEEEEECCCChHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHh
Confidence            478999999999999998877666 49999999888777666554

Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=95.65  E-value=0.064  Score=51.08  Aligned_cols=87  Identities=16%  Similarity=0.224  Sum_probs=59.5

Q ss_pred             CeEEEEcCCCcHHHHHHHHHHHhcCC--eEEEEeCCcccHHHHHhcCCcEEEeCCCCccccCCCCccEEEecCcc-----
Q 016265          234 KSILVLNGSGGVGSLVIQLAKQVFGA--SRVAATSSTRNLEFLKSLGADLAIDYTKDNFEDLPEKFDVVYDAIGQ-----  306 (392)
Q Consensus       234 ~~VlI~Ga~G~vG~~aiqlak~~~G~--~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~~~~~~~D~vid~~G~-----  306 (392)
                      .+|+|+| +|.+|.+.+..++. .|.  ++++.++++++.+.+++.|....+.   .+..+..+.+|+||.|+..     
T Consensus         7 ~~I~IIG-~G~mG~sla~~l~~-~g~~~~V~~~dr~~~~~~~a~~~g~~~~~~---~~~~~~~~~aDvViiavp~~~~~~   81 (307)
T PRK07502          7 DRVALIG-IGLIGSSLARAIRR-LGLAGEIVGADRSAETRARARELGLGDRVT---TSAAEAVKGADLVILCVPVGASGA   81 (307)
T ss_pred             cEEEEEe-eCHHHHHHHHHHHh-cCCCcEEEEEECCHHHHHHHHhCCCCceec---CCHHHHhcCCCEEEECCCHHHHHH
Confidence            5799998 99999988887776 474  7888888888888888887532211   1122334578999999872     


Q ss_pred             -HHHHHHhcccCCeEEEEcC
Q 016265          307 -CDRAVKAIKEGGTVVALTG  325 (392)
Q Consensus       307 -~~~~~~~l~~~G~iv~~g~  325 (392)
                       ++.....++++..++.++.
T Consensus        82 v~~~l~~~l~~~~iv~dvgs  101 (307)
T PRK07502         82 VAAEIAPHLKPGAIVTDVGS  101 (307)
T ss_pred             HHHHHHhhCCCCCEEEeCcc
Confidence             2334445667766666543

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=95.63  E-value=0.13  Score=47.28  Aligned_cols=95  Identities=16%  Similarity=0.139  Sum_probs=62.9

Q ss_pred             HhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCC-cEEEeCCCCccccCCCCccEEEecC
Q 016265          226 ERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGA-DLAIDYTKDNFEDLPEKFDVVYDAI  304 (392)
Q Consensus       226 ~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~-~~vi~~~~~~~~~~~~~~D~vid~~  304 (392)
                      +.....++++||-+| +|. |..+..+++  .|.+++.++.+++.++.+++... ...+..+-+.+.-..+.||+|+...
T Consensus        36 ~~l~~~~~~~vLDiG-cG~-G~~~~~l~~--~~~~v~~~D~s~~~l~~a~~~~~~~~~~~~d~~~~~~~~~~fD~V~s~~  111 (251)
T PRK10258         36 AMLPQRKFTHVLDAG-CGP-GWMSRYWRE--RGSQVTALDLSPPMLAQARQKDAADHYLAGDIESLPLATATFDLAWSNL  111 (251)
T ss_pred             HhcCccCCCeEEEee-CCC-CHHHHHHHH--cCCeEEEEECCHHHHHHHHhhCCCCCEEEcCcccCcCCCCcEEEEEECc
Confidence            334445678899998 665 777777775  37899999999998888876542 2222222122111234699998654


Q ss_pred             c---------cHHHHHHhcccCCeEEEEc
Q 016265          305 G---------QCDRAVKAIKEGGTVVALT  324 (392)
Q Consensus       305 G---------~~~~~~~~l~~~G~iv~~g  324 (392)
                      .         .+..+.+.|++||.++...
T Consensus       112 ~l~~~~d~~~~l~~~~~~Lk~gG~l~~~~  140 (251)
T PRK10258        112 AVQWCGNLSTALRELYRVVRPGGVVAFTT  140 (251)
T ss_pred             hhhhcCCHHHHHHHHHHHcCCCeEEEEEe
Confidence            3         2577888999999998653

>PLN02244 tocopherol O-methyltransferase

Probab=95.62  E-value=0.14  Score=49.60  Aligned_cols=92  Identities=20%  Similarity=0.186  Sum_probs=61.1

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHh----cCCcE---EEeCCCCccccCCCCccEEEec
Q 016265          231 SAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKS----LGADL---AIDYTKDNFEDLPEKFDVVYDA  303 (392)
Q Consensus       231 ~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~----~G~~~---vi~~~~~~~~~~~~~~D~vid~  303 (392)
                      +++++||=+| + |.|..+..+++. +|++++.++.++...+.+++    .|...   ++..+..+.....+.||+|+..
T Consensus       117 ~~~~~VLDiG-C-G~G~~~~~La~~-~g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~  193 (340)
T PLN02244        117 KRPKRIVDVG-C-GIGGSSRYLARK-YGANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSM  193 (340)
T ss_pred             CCCCeEEEec-C-CCCHHHHHHHHh-cCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEEC
Confidence            7889999887 4 557788889987 59999999998887666543    34321   1111111111123469999864


Q ss_pred             Cc---------cHHHHHHhcccCCeEEEEcC
Q 016265          304 IG---------QCDRAVKAIKEGGTVVALTG  325 (392)
Q Consensus       304 ~G---------~~~~~~~~l~~~G~iv~~g~  325 (392)
                      -.         .+..+.++|+|||+++....
T Consensus       194 ~~~~h~~d~~~~l~e~~rvLkpGG~lvi~~~  224 (340)
T PLN02244        194 ESGEHMPDKRKFVQELARVAAPGGRIIIVTW  224 (340)
T ss_pred             CchhccCCHHHHHHHHHHHcCCCcEEEEEEe
Confidence            22         14688899999999987643

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=95.62  E-value=0.15  Score=48.01  Aligned_cols=141  Identities=23%  Similarity=0.260  Sum_probs=81.6

Q ss_pred             CCCCCCEEEecccccccCCCCCCCcceeEEEecCCceeeCCCCCCHHhHhccchhHHHH--HHHHHhcCCCCCCeEEEEc
Q 016265          163 EFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETA--YEGLERTGFSAGKSILVLN  240 (392)
Q Consensus       163 ~~~vGdrV~~~~~~~~~~~~~~~G~~a~~~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta--~~al~~~~~~~g~~VlI~G  240 (392)
                      -+++|+|.+..+            +|.+|..-....++++.+++.|-..    ....|.  ..+|++ ..++|++|+=+|
T Consensus       108 P~rig~~f~I~P------------sw~~~~~~~~~~~i~lDPGlAFGTG----~HpTT~lcL~~Le~-~~~~g~~vlDvG  170 (300)
T COG2264         108 PVRIGERFVIVP------------SWREYPEPSDELNIELDPGLAFGTG----THPTTSLCLEALEK-LLKKGKTVLDVG  170 (300)
T ss_pred             cEEeeeeEEECC------------CCccCCCCCCceEEEEccccccCCC----CChhHHHHHHHHHH-hhcCCCEEEEec
Confidence            367788877654            3555433324566777777755321    122122  223332 356899999987


Q ss_pred             CCCcHHHHHHHHHHHhcCCe-EEEEeCCcccHHHHH----hcCCcEEEeCCCCccc--cCCCCccEEEecC--cc----H
Q 016265          241 GSGGVGSLVIQLAKQVFGAS-RVAATSSTRNLEFLK----SLGADLAIDYTKDNFE--DLPEKFDVVYDAI--GQ----C  307 (392)
Q Consensus       241 a~G~vG~~aiqlak~~~G~~-vv~~~~~~~~~~~~~----~~G~~~vi~~~~~~~~--~~~~~~D~vid~~--G~----~  307 (392)
                        .|.|.+++..+|.  |+. ++.++..+-..+.++    ..|....+........  ...+.+|+|+-..  ..    .
T Consensus       171 --cGSGILaIAa~kL--GA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~~~~~DvIVANILA~vl~~La  246 (300)
T COG2264         171 --CGSGILAIAAAKL--GAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPENGPFDVIVANILAEVLVELA  246 (300)
T ss_pred             --CChhHHHHHHHHc--CCceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhcccCcccEEEehhhHHHHHHHH
Confidence              4569999988884  775 666666555444443    3444421100001111  1235799999774  21    3


Q ss_pred             HHHHHhcccCCeEEEEc
Q 016265          308 DRAVKAIKEGGTVVALT  324 (392)
Q Consensus       308 ~~~~~~l~~~G~iv~~g  324 (392)
                      .....+++|||++++-|
T Consensus       247 ~~~~~~lkpgg~lIlSG  263 (300)
T COG2264         247 PDIKRLLKPGGRLILSG  263 (300)
T ss_pred             HHHHHHcCCCceEEEEe
Confidence            68888999999998765

>PRK07677 short chain dehydrogenase; Provisional

Probab=95.61  E-value=0.048  Score=49.98  Aligned_cols=41  Identities=24%  Similarity=0.349  Sum_probs=33.9

Q ss_pred             CCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHH
Q 016265          233 GKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFL  274 (392)
Q Consensus       233 g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~  274 (392)
                      |++++|+||+|++|...++.... .|++++++.+++++.+.+
T Consensus         1 ~k~~lItG~s~giG~~ia~~l~~-~G~~Vi~~~r~~~~~~~~   41 (252)
T PRK07677          1 EKVVIITGGSSGMGKAMAKRFAE-EGANVVITGRTKEKLEEA   41 (252)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHH-CCCEEEEEeCCHHHHHHH
Confidence            57899999999999998888777 599998888877665544

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=95.56  E-value=0.034  Score=56.31  Aligned_cols=74  Identities=22%  Similarity=0.458  Sum_probs=53.8

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCc---------------------ccHHHHHhcCCcEEEeCCCC-
Q 016265          231 SAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSST---------------------RNLEFLKSLGADLAIDYTKD-  288 (392)
Q Consensus       231 ~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~---------------------~~~~~~~~~G~~~vi~~~~~-  288 (392)
                      ..+++|+|+| +|+.|+.++..++. .|.++++....+                     ...+.++++|.+..++..-. 
T Consensus       139 ~~~~~V~IIG-~GpaGl~aA~~l~~-~G~~V~i~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v~~  216 (467)
T TIGR01318       139 PTGKRVAVIG-AGPAGLACADILAR-AGVQVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMGIEFHLNCEVGR  216 (467)
T ss_pred             CCCCeEEEEC-CCHHHHHHHHHHHH-cCCeEEEEecCCCCCceeeecCccccCCHHHHHHHHHHHHHCCCEEECCCEeCC
Confidence            3678999998 99999999999988 599988887543                     23566788898766554211 


Q ss_pred             --ccccCCCCccEEEecCcc
Q 016265          289 --NFEDLPEKFDVVYDAIGQ  306 (392)
Q Consensus       289 --~~~~~~~~~D~vid~~G~  306 (392)
                        ...+...++|.||.++|.
T Consensus       217 ~~~~~~~~~~~D~vilAtGa  236 (467)
T TIGR01318       217 DISLDDLLEDYDAVFLGVGT  236 (467)
T ss_pred             ccCHHHHHhcCCEEEEEeCC
Confidence              122223479999999984

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=95.56  E-value=0.13  Score=47.44  Aligned_cols=95  Identities=23%  Similarity=0.238  Sum_probs=66.4

Q ss_pred             HHhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCCccccCCCCccEEEecC
Q 016265          225 LERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFEDLPEKFDVVYDAI  304 (392)
Q Consensus       225 l~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~~~~~~~D~vid~~  304 (392)
                      +......++++||=+| +|. |..+..+++..-+.+++.++.++.-++.+++.+.+.+ ..+-.++. ....||+|+-..
T Consensus        22 l~~l~~~~~~~vLDlG-cG~-G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~~~~~~-~~d~~~~~-~~~~fD~v~~~~   97 (255)
T PRK14103         22 LARVGAERARRVVDLG-CGP-GNLTRYLARRWPGAVIEALDSSPEMVAAARERGVDAR-TGDVRDWK-PKPDTDVVVSNA   97 (255)
T ss_pred             HHhCCCCCCCEEEEEc-CCC-CHHHHHHHHHCCCCEEEEEECCHHHHHHHHhcCCcEE-EcChhhCC-CCCCceEEEEeh
Confidence            4556678889999997 444 7888888876336789999999888888877665432 22222221 234799998754


Q ss_pred             c---------cHHHHHHhcccCCeEEEE
Q 016265          305 G---------QCDRAVKAIKEGGTVVAL  323 (392)
Q Consensus       305 G---------~~~~~~~~l~~~G~iv~~  323 (392)
                      .         .+..+.+.|+|||+++..
T Consensus        98 ~l~~~~d~~~~l~~~~~~LkpgG~l~~~  125 (255)
T PRK14103         98 ALQWVPEHADLLVRWVDELAPGSWIAVQ  125 (255)
T ss_pred             hhhhCCCHHHHHHHHHHhCCCCcEEEEE
Confidence            3         146788899999998764

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=95.55  E-value=0.17  Score=46.12  Aligned_cols=99  Identities=21%  Similarity=0.282  Sum_probs=66.9

Q ss_pred             HHhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcC-CeEEEEeCCcccHHHHH----hcCCcEEEeCCCCcccc--CCCCc
Q 016265          225 LERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFG-ASRVAATSSTRNLEFLK----SLGADLAIDYTKDNFED--LPEKF  297 (392)
Q Consensus       225 l~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G-~~vv~~~~~~~~~~~~~----~~G~~~vi~~~~~~~~~--~~~~~  297 (392)
                      +...++.+|++|+=.|  -|.|.+++-||+.+.. .+++.....++..+.++    ++|....+.....+..+  ..+.+
T Consensus        87 ~~~~gi~pg~rVlEAG--tGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~~~v  164 (256)
T COG2519          87 VARLGISPGSRVLEAG--TGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDEEDV  164 (256)
T ss_pred             HHHcCCCCCCEEEEcc--cCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEecccccccccccc
Confidence            3567899999998876  4558899999987644 47777787777776664    34544323222222222  13378


Q ss_pred             cEEEecCc----cHHHHHHhcccCCeEEEEcC
Q 016265          298 DVVYDAIG----QCDRAVKAIKEGGTVVALTG  325 (392)
Q Consensus       298 D~vid~~G----~~~~~~~~l~~~G~iv~~g~  325 (392)
                      |.+|-=..    .++.+.+.|++||.++.+..
T Consensus       165 Dav~LDmp~PW~~le~~~~~Lkpgg~~~~y~P  196 (256)
T COG2519         165 DAVFLDLPDPWNVLEHVSDALKPGGVVVVYSP  196 (256)
T ss_pred             CEEEEcCCChHHHHHHHHHHhCCCcEEEEEcC
Confidence            88774443    36899999999999998743

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=95.55  E-value=0.044  Score=53.51  Aligned_cols=91  Identities=27%  Similarity=0.293  Sum_probs=61.2

Q ss_pred             CeEEEEcCCCcHHHHHHHHHHHhcC-CeEEEEeCCcccHHHHHhcC---C-cEEEeCCCC-ccccCCCCccEEEecCccH
Q 016265          234 KSILVLNGSGGVGSLVIQLAKQVFG-ASRVAATSSTRNLEFLKSLG---A-DLAIDYTKD-NFEDLPEKFDVVYDAIGQC  307 (392)
Q Consensus       234 ~~VlI~Ga~G~vG~~aiqlak~~~G-~~vv~~~~~~~~~~~~~~~G---~-~~vi~~~~~-~~~~~~~~~D~vid~~G~~  307 (392)
                      .+|||+| +|.||+.+++.+.+ .+ .+|.+++++.++.+.+...+   . ...+|..+. ...++..++|+||+|.+..
T Consensus         2 ~~ilviG-aG~Vg~~va~~la~-~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~~~d~VIn~~p~~   79 (389)
T COG1748           2 MKILVIG-AGGVGSVVAHKLAQ-NGDGEVTIADRSKEKCARIAELIGGKVEALQVDAADVDALVALIKDFDLVINAAPPF   79 (389)
T ss_pred             CcEEEEC-CchhHHHHHHHHHh-CCCceEEEEeCCHHHHHHHHhhccccceeEEecccChHHHHHHHhcCCEEEEeCCch
Confidence            4789998 79999999998655 36 78999999988888886553   1 234444332 2344556779999998732


Q ss_pred             --HHHH-HhcccCCeEEEEcCC
Q 016265          308 --DRAV-KAIKEGGTVVALTGA  326 (392)
Q Consensus       308 --~~~~-~~l~~~G~iv~~g~~  326 (392)
                        ..++ .|++.|=.++..+..
T Consensus        80 ~~~~i~ka~i~~gv~yvDts~~  101 (389)
T COG1748          80 VDLTILKACIKTGVDYVDTSYY  101 (389)
T ss_pred             hhHHHHHHHHHhCCCEEEcccC
Confidence              3444 344555556655443

>PRK06196 oxidoreductase; Provisional

Probab=95.55  E-value=0.054  Score=51.63  Aligned_cols=73  Identities=16%  Similarity=0.239  Sum_probs=47.9

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHH-hcCCcEEE--eCCCCc-ccc-------CCCCccEE
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLK-SLGADLAI--DYTKDN-FED-------LPEKFDVV  300 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~-~~G~~~vi--~~~~~~-~~~-------~~~~~D~v  300 (392)
                      .|.+|+|+||+|++|...+..... .|++|+++.++.++.+.+. ++..-..+  |..+.. +.+       ...++|++
T Consensus        25 ~~k~vlITGasggIG~~~a~~L~~-~G~~Vv~~~R~~~~~~~~~~~l~~v~~~~~Dl~d~~~v~~~~~~~~~~~~~iD~l  103 (315)
T PRK06196         25 SGKTAIVTGGYSGLGLETTRALAQ-AGAHVIVPARRPDVAREALAGIDGVEVVMLDLADLESVRAFAERFLDSGRRIDIL  103 (315)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHHhhhCeEEEccCCCHHHHHHHHHHHHhcCCCCCEE
Confidence            468999999999999988776666 4999999988877655432 33211222  332211 111       12468999


Q ss_pred             EecCc
Q 016265          301 YDAIG  305 (392)
Q Consensus       301 id~~G  305 (392)
                      |.+.|
T Consensus       104 i~nAg  108 (315)
T PRK06196        104 INNAG  108 (315)
T ss_pred             EECCC
Confidence            99876

>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional

Probab=95.53  E-value=0.058  Score=50.30  Aligned_cols=73  Identities=23%  Similarity=0.229  Sum_probs=45.3

Q ss_pred             CCCeEEEEcCCC--cHHHHHHHHHHHhcCCeEEEEeCCcccH---HHH-HhcCCcEEE--eCCCCc-ccc-------CCC
Q 016265          232 AGKSILVLNGSG--GVGSLVIQLAKQVFGASRVAATSSTRNL---EFL-KSLGADLAI--DYTKDN-FED-------LPE  295 (392)
Q Consensus       232 ~g~~VlI~Ga~G--~vG~~aiqlak~~~G~~vv~~~~~~~~~---~~~-~~~G~~~vi--~~~~~~-~~~-------~~~  295 (392)
                      .|+++||+||++  ++|.+.++.+.. .|++|+++.++++..   +.+ +++|....+  |..+.. ...       .-+
T Consensus         6 ~~k~~lVTGas~~~GIG~aiA~~la~-~Ga~V~~~~r~~~~~~~~~~~~~~~g~~~~~~~Dv~d~~~v~~~~~~~~~~~g   84 (271)
T PRK06505          6 QGKRGLIMGVANDHSIAWGIAKQLAA-QGAELAFTYQGEALGKRVKPLAESLGSDFVLPCDVEDIASVDAVFEALEKKWG   84 (271)
T ss_pred             CCCEEEEeCCCCCCcHHHHHHHHHHh-CCCEEEEecCchHHHHHHHHHHHhcCCceEEeCCCCCHHHHHHHHHHHHHHhC
Confidence            478999999886  999997776655 499998887654322   222 344543333  322211 111       124


Q ss_pred             CccEEEecCc
Q 016265          296 KFDVVYDAIG  305 (392)
Q Consensus       296 ~~D~vid~~G  305 (392)
                      .+|++|++.|
T Consensus        85 ~iD~lVnnAG   94 (271)
T PRK06505         85 KLDFVVHAIG   94 (271)
T ss_pred             CCCEEEECCc
Confidence            6899998876

>PRK12829 short chain dehydrogenase; Provisional

Probab=95.53  E-value=0.056  Score=49.73  Aligned_cols=76  Identities=22%  Similarity=0.250  Sum_probs=50.6

Q ss_pred             CCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHh-cCCc--EE--EeCCCCc-cc----c---CCC
Q 016265          229 GFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKS-LGAD--LA--IDYTKDN-FE----D---LPE  295 (392)
Q Consensus       229 ~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~-~G~~--~v--i~~~~~~-~~----~---~~~  295 (392)
                      ..-++.++||+||+|++|...+..+.. .|.+|+++.++.++.+.+.+ ....  .+  .|..+.. ..    +   ...
T Consensus         7 ~~~~~~~vlItGa~g~iG~~~a~~L~~-~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   85 (264)
T PRK12829          7 KPLDGLRVLVTGGASGIGRAIAEAFAE-AGARVHVCDVSEAALAATAARLPGAKVTATVADVADPAQVERVFDTAVERFG   85 (264)
T ss_pred             hccCCCEEEEeCCCCcHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHHHhcCceEEEEccCCCHHHHHHHHHHHHHHhC
Confidence            345778999999999999998888777 59999888887766655443 2211  12  2333221 11    1   124


Q ss_pred             CccEEEecCc
Q 016265          296 KFDVVYDAIG  305 (392)
Q Consensus       296 ~~D~vid~~G  305 (392)
                      ++|+||.+.|
T Consensus        86 ~~d~vi~~ag   95 (264)
T PRK12829         86 GLDVLVNNAG   95 (264)
T ss_pred             CCCEEEECCC
Confidence            7899998876

>KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism]

Probab=95.53  E-value=0.041  Score=51.48  Aligned_cols=73  Identities=26%  Similarity=0.423  Sum_probs=54.1

Q ss_pred             CCCCeEEEEcCCCcHHHH-HHHHHHHhcCCeEEEEeCCcccHHHH-----HhcCC---cEEEeCCCCc--cccC---C--
Q 016265          231 SAGKSILVLNGSGGVGSL-VIQLAKQVFGASRVAATSSTRNLEFL-----KSLGA---DLAIDYTKDN--FEDL---P--  294 (392)
Q Consensus       231 ~~g~~VlI~Ga~G~vG~~-aiqlak~~~G~~vv~~~~~~~~~~~~-----~~~G~---~~vi~~~~~~--~~~~---~--  294 (392)
                      +.|++.+|.||+.++|.+ |-++||  .|.+++.+.++++|++..     ++.++   .+++|+.+++  ++.+   .  
T Consensus        47 ~~g~WAVVTGaTDGIGKayA~eLAk--rG~nvvLIsRt~~KL~~v~kEI~~~~~vev~~i~~Dft~~~~~ye~i~~~l~~  124 (312)
T KOG1014|consen   47 KLGSWAVVTGATDGIGKAYARELAK--RGFNVVLISRTQEKLEAVAKEIEEKYKVEVRIIAIDFTKGDEVYEKLLEKLAG  124 (312)
T ss_pred             hcCCEEEEECCCCcchHHHHHHHHH--cCCEEEEEeCCHHHHHHHHHHHHHHhCcEEEEEEEecCCCchhHHHHHHHhcC
Confidence            457999999999999977 778887  399999999999998765     33442   2467887766  3332   1  


Q ss_pred             CCccEEEecCc
Q 016265          295 EKFDVVYDAIG  305 (392)
Q Consensus       295 ~~~D~vid~~G  305 (392)
                      -.+-+.++++|
T Consensus       125 ~~VgILVNNvG  135 (312)
T KOG1014|consen  125 LDVGILVNNVG  135 (312)
T ss_pred             CceEEEEeccc
Confidence            24567788887

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=95.51  E-value=0.17  Score=47.02  Aligned_cols=97  Identities=22%  Similarity=0.236  Sum_probs=63.0

Q ss_pred             HhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcC--CeEEEEeCCcccHHHHHhcC-------Cc--EEEeCCCCccccCC
Q 016265          226 ERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFG--ASRVAATSSTRNLEFLKSLG-------AD--LAIDYTKDNFEDLP  294 (392)
Q Consensus       226 ~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G--~~vv~~~~~~~~~~~~~~~G-------~~--~vi~~~~~~~~~~~  294 (392)
                      +...++++++||-+| +| .|..+..+++.. +  .+++.++.+++-++.+++..       .+  ..+..+...+.-..
T Consensus        67 ~~~~~~~~~~VLDlG-cG-tG~~~~~la~~~-~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~  143 (261)
T PLN02233         67 SWSGAKMGDRVLDLC-CG-SGDLAFLLSEKV-GSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDD  143 (261)
T ss_pred             HHhCCCCCCEEEEEC-Cc-CCHHHHHHHHHh-CCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCC
Confidence            345678899999997 43 366778888763 4  58899999988877775321       11  11222212221113


Q ss_pred             CCccEEEecCc---------cHHHHHHhcccCCeEEEEcC
Q 016265          295 EKFDVVYDAIG---------QCDRAVKAIKEGGTVVALTG  325 (392)
Q Consensus       295 ~~~D~vid~~G---------~~~~~~~~l~~~G~iv~~g~  325 (392)
                      +.||+|+-..+         .+.++.+.|+|||+++....
T Consensus       144 ~sfD~V~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~  183 (261)
T PLN02233        144 CYFDAITMGYGLRNVVDRLKAMQEMYRVLKPGSRVSILDF  183 (261)
T ss_pred             CCEeEEEEecccccCCCHHHHHHHHHHHcCcCcEEEEEEC
Confidence            46999986543         15789999999999987744

>PRK05867 short chain dehydrogenase; Provisional

Probab=95.49  E-value=0.056  Score=49.62  Aligned_cols=73  Identities=23%  Similarity=0.274  Sum_probs=48.3

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHH----hcCCcE-E--EeCCCCc-ccc-------CCCC
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLK----SLGADL-A--IDYTKDN-FED-------LPEK  296 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~----~~G~~~-v--i~~~~~~-~~~-------~~~~  296 (392)
                      .|.++||+||+|++|...++.+.. .|++|+++.++.++++.+.    ..|... .  .|..+.. +.+       .-++
T Consensus         8 ~~k~vlVtGas~gIG~~ia~~l~~-~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~   86 (253)
T PRK05867          8 HGKRALITGASTGIGKRVALAYVE-AGAQVAIAARHLDALEKLADEIGTSGGKVVPVCCDVSQHQQVTSMLDQVTAELGG   86 (253)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHH-CCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence            478999999999999998887766 5999999888777655442    223221 2  2332211 111       1247


Q ss_pred             ccEEEecCc
Q 016265          297 FDVVYDAIG  305 (392)
Q Consensus       297 ~D~vid~~G  305 (392)
                      +|++|.+.|
T Consensus        87 id~lv~~ag   95 (253)
T PRK05867         87 IDIAVCNAG   95 (253)
T ss_pred             CCEEEECCC
Confidence            899998876

>PRK06398 aldose dehydrogenase; Validated

Probab=95.45  E-value=0.11  Score=47.93  Aligned_cols=38  Identities=24%  Similarity=0.348  Sum_probs=31.6

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCccc
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRN  270 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~  270 (392)
                      .|.++||+||+|++|...+..+.. .|++|+++.+++.+
T Consensus         5 ~gk~vlItGas~gIG~~ia~~l~~-~G~~Vi~~~r~~~~   42 (258)
T PRK06398          5 KDKVAIVTGGSQGIGKAVVNRLKE-EGSNVINFDIKEPS   42 (258)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHH-CCCeEEEEeCCccc
Confidence            478999999999999998887766 59999988876543

>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=95.45  E-value=0.076  Score=48.39  Aligned_cols=73  Identities=22%  Similarity=0.322  Sum_probs=48.6

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHH----HhcCCcE---EEeCCCC-cccc-------CCCC
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFL----KSLGADL---AIDYTKD-NFED-------LPEK  296 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~----~~~G~~~---vi~~~~~-~~~~-------~~~~  296 (392)
                      .|++++|+|++|++|+..++.+.. .|++++++++++.+++.+    +..+...   ..|..+. ...+       ...+
T Consensus         4 ~~~~~lItG~~g~iG~~~a~~l~~-~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   82 (253)
T PRK08217          4 KDKVIVITGGAQGLGRAMAEYLAQ-KGAKLALIDLNQEKLEEAVAECGALGTEVRGYAANVTDEEDVEATFAQIAEDFGQ   82 (253)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            478999999999999999988877 599998888877665443    2334432   2232221 1111       1246


Q ss_pred             ccEEEecCc
Q 016265          297 FDVVYDAIG  305 (392)
Q Consensus       297 ~D~vid~~G  305 (392)
                      +|++|.+.|
T Consensus        83 id~vi~~ag   91 (253)
T PRK08217         83 LNGLINNAG   91 (253)
T ss_pred             CCEEEECCC
Confidence            899998876

>PRK09291 short chain dehydrogenase; Provisional

Probab=95.44  E-value=0.062  Score=49.27  Aligned_cols=72  Identities=22%  Similarity=0.312  Sum_probs=48.3

Q ss_pred             CCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHH----hcCCcE-E--EeCCCC-cccc-CCCCccEEEec
Q 016265          233 GKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLK----SLGADL-A--IDYTKD-NFED-LPEKFDVVYDA  303 (392)
Q Consensus       233 g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~----~~G~~~-v--i~~~~~-~~~~-~~~~~D~vid~  303 (392)
                      +.++||+||+|++|...++.+.. .|++++++++++.+.+.++    ..+... +  .|..+. .+.. ...++|++|.+
T Consensus         2 ~~~vlVtGasg~iG~~ia~~l~~-~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~id~vi~~   80 (257)
T PRK09291          2 SKTILITGAGSGFGREVALRLAR-KGHNVIAGVQIAPQVTALRAEAARRGLALRVEKLDLTDAIDRAQAAEWDVDVLLNN   80 (257)
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHHHHhcCCcceEEEeeCCCHHHHHHHhcCCCCEEEEC
Confidence            46899999999999999888877 5999999888776654443    233221 1  233222 1211 23479999998


Q ss_pred             Cc
Q 016265          304 IG  305 (392)
Q Consensus       304 ~G  305 (392)
                      .|
T Consensus        81 ag   82 (257)
T PRK09291         81 AG   82 (257)
T ss_pred             CC
Confidence            76

>PRK13243 glyoxylate reductase; Reviewed

Probab=95.41  E-value=0.079  Score=51.12  Aligned_cols=104  Identities=24%  Similarity=0.258  Sum_probs=71.0

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCCccccCCCCccEEEecCcc-----
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFEDLPEKFDVVYDAIGQ-----  306 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~~~~~~~D~vid~~G~-----  306 (392)
                      .|.+|.|+| .|.+|...++.++. +|.+|++.+++.... .....|...      .++.+.....|+|+-++..     
T Consensus       149 ~gktvgIiG-~G~IG~~vA~~l~~-~G~~V~~~d~~~~~~-~~~~~~~~~------~~l~ell~~aDiV~l~lP~t~~T~  219 (333)
T PRK13243        149 YGKTIGIIG-FGRIGQAVARRAKG-FGMRILYYSRTRKPE-AEKELGAEY------RPLEELLRESDFVSLHVPLTKETY  219 (333)
T ss_pred             CCCEEEEEC-cCHHHHHHHHHHHH-CCCEEEEECCCCChh-hHHHcCCEe------cCHHHHHhhCCEEEEeCCCChHHh
Confidence            578999998 99999999999998 699998888765432 333444321      1344455678999988751     


Q ss_pred             --H-HHHHHhcccCCeEEEEcCCCCCCceEEEEeecHHHHHHHHHHHHCCCcc
Q 016265          307 --C-DRAVKAIKEGGTVVALTGAVTPPGFRFVVTSNGEVLKKLNPYLESGKVK  356 (392)
Q Consensus       307 --~-~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~l~  356 (392)
                        + ...++.|+++..++.++...            --+-+.+.+.+++|++.
T Consensus       220 ~~i~~~~~~~mk~ga~lIN~aRg~------------~vd~~aL~~aL~~g~i~  260 (333)
T PRK13243        220 HMINEERLKLMKPTAILVNTARGK------------VVDTKALVKALKEGWIA  260 (333)
T ss_pred             hccCHHHHhcCCCCeEEEECcCch------------hcCHHHHHHHHHcCCeE
Confidence              1 57788899998888775322            11224556666776654

>PRK05854 short chain dehydrogenase; Provisional

Probab=95.37  E-value=0.074  Score=50.77  Aligned_cols=41  Identities=22%  Similarity=0.235  Sum_probs=33.7

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHH
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEF  273 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~  273 (392)
                      .|.+++|+||++++|...+..+.. .|++|+++.++.++.+.
T Consensus        13 ~gk~~lITGas~GIG~~~a~~La~-~G~~Vil~~R~~~~~~~   53 (313)
T PRK05854         13 SGKRAVVTGASDGLGLGLARRLAA-AGAEVILPVRNRAKGEA   53 (313)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHH-CCCEEEEEeCCHHHHHH
Confidence            478999999999999998776655 49999999988776544

>PRK07062 short chain dehydrogenase; Provisional

Probab=95.36  E-value=0.067  Score=49.41  Aligned_cols=42  Identities=26%  Similarity=0.380  Sum_probs=35.0

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHH
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFL  274 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~  274 (392)
                      .|++++|+||++++|...++.... .|++|+++.+++++++.+
T Consensus         7 ~~k~~lItGas~giG~~ia~~l~~-~G~~V~~~~r~~~~~~~~   48 (265)
T PRK07062          7 EGRVAVVTGGSSGIGLATVELLLE-AGASVAICGRDEERLASA   48 (265)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHH-CCCeEEEEeCCHHHHHHH
Confidence            478999999999999998887766 599999999887766543

>PRK06101 short chain dehydrogenase; Provisional

Probab=95.32  E-value=0.16  Score=46.12  Aligned_cols=43  Identities=16%  Similarity=0.243  Sum_probs=34.0

Q ss_pred             CeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhc
Q 016265          234 KSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSL  277 (392)
Q Consensus       234 ~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~  277 (392)
                      .+++|+||+|++|...+..... .|++|+++++++++++.+.+.
T Consensus         2 ~~vlItGas~giG~~la~~L~~-~G~~V~~~~r~~~~~~~~~~~   44 (240)
T PRK06101          2 TAVLITGATSGIGKQLALDYAK-QGWQVIACGRNQSVLDELHTQ   44 (240)
T ss_pred             cEEEEEcCCcHHHHHHHHHHHh-CCCEEEEEECCHHHHHHHHHh
Confidence            4799999999999876665555 499999999988877766543

>PRK06180 short chain dehydrogenase; Provisional

Probab=95.31  E-value=0.075  Score=49.59  Aligned_cols=73  Identities=25%  Similarity=0.228  Sum_probs=49.2

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcC-Cc-EEE--eCCCCc-ccc-------CCCCccE
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLG-AD-LAI--DYTKDN-FED-------LPEKFDV  299 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G-~~-~vi--~~~~~~-~~~-------~~~~~D~  299 (392)
                      .+.+++|+||+|++|...++.+.. .|++|+++++++++++.+.+.. .. ..+  |..+.. ..+       ..+++|+
T Consensus         3 ~~~~vlVtGasggiG~~la~~l~~-~G~~V~~~~r~~~~~~~l~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~~~d~   81 (277)
T PRK06180          3 SMKTWLITGVSSGFGRALAQAALA-AGHRVVGTVRSEAARADFEALHPDRALARLLDVTDFDAIDAVVADAEATFGPIDV   81 (277)
T ss_pred             CCCEEEEecCCChHHHHHHHHHHh-CcCEEEEEeCCHHHHHHHHhhcCCCeeEEEccCCCHHHHHHHHHHHHHHhCCCCE
Confidence            357899999999999998887766 4999999999887776655432 21 122  332221 111       1236899


Q ss_pred             EEecCc
Q 016265          300 VYDAIG  305 (392)
Q Consensus       300 vid~~G  305 (392)
                      +|.+.|
T Consensus        82 vv~~ag   87 (277)
T PRK06180         82 LVNNAG   87 (277)
T ss_pred             EEECCC
Confidence            999977

>PRK06841 short chain dehydrogenase; Provisional

Probab=95.31  E-value=0.078  Score=48.57  Aligned_cols=73  Identities=22%  Similarity=0.301  Sum_probs=47.7

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcE--E--EeCCCCc-ccc-------CCCCccE
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADL--A--IDYTKDN-FED-------LPEKFDV  299 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~--v--i~~~~~~-~~~-------~~~~~D~  299 (392)
                      .+.+|||+||+|++|...++.+.. .|++|+++.++++..+...+.....  .  .|..+.. +.+       ...++|+
T Consensus        14 ~~k~vlItGas~~IG~~la~~l~~-~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~~d~   92 (255)
T PRK06841         14 SGKVAVVTGGASGIGHAIAELFAA-KGARVALLDRSEDVAEVAAQLLGGNAKGLVCDVSDSQSVEAAVAAVISAFGRIDI   92 (255)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHhhCCceEEEEecCCCHHHHHHHHHHHHHHhCCCCE
Confidence            478999999999999988877766 5999998888766554444432211  2  2322211 111       1236899


Q ss_pred             EEecCc
Q 016265          300 VYDAIG  305 (392)
Q Consensus       300 vid~~G  305 (392)
                      +|.+.|
T Consensus        93 vi~~ag   98 (255)
T PRK06841         93 LVNSAG   98 (255)
T ss_pred             EEECCC
Confidence            999876

>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase

Probab=95.29  E-value=0.078  Score=48.32  Aligned_cols=73  Identities=23%  Similarity=0.330  Sum_probs=46.3

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcc--cHHHHHhcCCc-EEE--eCCCCc-cc-------cCCCCcc
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTR--NLEFLKSLGAD-LAI--DYTKDN-FE-------DLPEKFD  298 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~--~~~~~~~~G~~-~vi--~~~~~~-~~-------~~~~~~D  298 (392)
                      .|.+++|+||+|++|...+..+.. .|++++++.++..  ..+.+++.+.. .++  |..+.+ +.       +...++|
T Consensus         4 ~~k~vlItGas~gIG~~ia~~l~~-~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d   82 (248)
T TIGR01832         4 EGKVALVTGANTGLGQGIAVGLAE-AGADIVGAGRSEPSETQQQVEALGRRFLSLTADLSDIEAIKALVDSAVEEFGHID   82 (248)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHH-CCCEEEEEcCchHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHcCCCC
Confidence            478999999999999997777666 4999988887542  12333444432 222  322211 11       1124689


Q ss_pred             EEEecCc
Q 016265          299 VVYDAIG  305 (392)
Q Consensus       299 ~vid~~G  305 (392)
                      ++|.+.|
T Consensus        83 ~li~~ag   89 (248)
T TIGR01832        83 ILVNNAG   89 (248)
T ss_pred             EEEECCC
Confidence            9998876

This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.

>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate

Probab=95.28  E-value=0.052  Score=44.06  Aligned_cols=90  Identities=29%  Similarity=0.382  Sum_probs=53.9

Q ss_pred             eEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcc----cHHHHHh--cC-CcEEEeCCCCccccCCCCccEEEecCcc-
Q 016265          235 SILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTR----NLEFLKS--LG-ADLAIDYTKDNFEDLPEKFDVVYDAIGQ-  306 (392)
Q Consensus       235 ~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~----~~~~~~~--~G-~~~vi~~~~~~~~~~~~~~D~vid~~G~-  306 (392)
                      +|.|+||+|-+|...+++....-..+++.+..+..    ++.....  .+ .+..+..  .+..+. .++|+||.|++. 
T Consensus         1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~Dvvf~a~~~~   77 (121)
T PF01118_consen    1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVED--ADPEEL-SDVDVVFLALPHG   77 (121)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEEE--TSGHHH-TTESEEEE-SCHH
T ss_pred             CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeehhccccccccceeEee--cchhHh-hcCCEEEecCchh
Confidence            58999999999999998887754566665554333    2332211  11 1222221  222223 689999999983 


Q ss_pred             --HHHHHHhcccCCeEEEEcCCC
Q 016265          307 --CDRAVKAIKEGGTVVALTGAV  327 (392)
Q Consensus       307 --~~~~~~~l~~~G~iv~~g~~~  327 (392)
                        .+..-++++.|-+++..+...
T Consensus        78 ~~~~~~~~~~~~g~~ViD~s~~~  100 (121)
T PF01118_consen   78 ASKELAPKLLKAGIKVIDLSGDF  100 (121)
T ss_dssp             HHHHHHHHHHHTTSEEEESSSTT
T ss_pred             HHHHHHHHHhhCCcEEEeCCHHH
Confidence              244445567777888886644

This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....

>PRK07478 short chain dehydrogenase; Provisional

Probab=95.27  E-value=0.085  Score=48.37  Aligned_cols=73  Identities=22%  Similarity=0.365  Sum_probs=48.0

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHH----HhcCCcE-EE--eCCCCc-c----cc---CCCC
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFL----KSLGADL-AI--DYTKDN-F----ED---LPEK  296 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~----~~~G~~~-vi--~~~~~~-~----~~---~~~~  296 (392)
                      .+.+++|+||+|++|...+..... .|++++++.+++++++.+    ++.|.+. .+  |..+.+ .    .+   .-++
T Consensus         5 ~~k~~lItGas~giG~~ia~~l~~-~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   83 (254)
T PRK07478          5 NGKVAIITGASSGIGRAAAKLFAR-EGAKVVVGARRQAELDQLVAEIRAEGGEAVALAGDVRDEAYAKALVALAVERFGG   83 (254)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHhcCC
Confidence            467999999999999998876666 499999998887766544    2334322 22  322211 1    11   1236


Q ss_pred             ccEEEecCc
Q 016265          297 FDVVYDAIG  305 (392)
Q Consensus       297 ~D~vid~~G  305 (392)
                      +|++|.+.|
T Consensus        84 id~li~~ag   92 (254)
T PRK07478         84 LDIAFNNAG   92 (254)
T ss_pred             CCEEEECCC
Confidence            899998876

>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional

Probab=95.27  E-value=0.092  Score=48.48  Aligned_cols=73  Identities=18%  Similarity=0.153  Sum_probs=44.6

Q ss_pred             CCCeEEEEcCC--CcHHHHHHHHHHHhcCCeEEEEeCCcccH---HHH-HhcCCcEEEeCCCCcccc----------CCC
Q 016265          232 AGKSILVLNGS--GGVGSLVIQLAKQVFGASRVAATSSTRNL---EFL-KSLGADLAIDYTKDNFED----------LPE  295 (392)
Q Consensus       232 ~g~~VlI~Ga~--G~vG~~aiqlak~~~G~~vv~~~~~~~~~---~~~-~~~G~~~vi~~~~~~~~~----------~~~  295 (392)
                      .|++++|+||+  +++|.+.++.... .|++|+++.++++..   +.+ ++++...++..+-.+.++          .-+
T Consensus         9 ~~k~~lItGas~g~GIG~a~a~~la~-~G~~v~l~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g   87 (258)
T PRK07533          9 AGKRGLVVGIANEQSIAWGCARAFRA-LGAELAVTYLNDKARPYVEPLAEELDAPIFLPLDVREPGQLEAVFARIAEEWG   87 (258)
T ss_pred             CCCEEEEECCCCCCcHHHHHHHHHHH-cCCEEEEEeCChhhHHHHHHHHHhhccceEEecCcCCHHHHHHHHHHHHHHcC
Confidence            47899999987  4999998776655 499998888765432   222 334432333222111111          124


Q ss_pred             CccEEEecCc
Q 016265          296 KFDVVYDAIG  305 (392)
Q Consensus       296 ~~D~vid~~G  305 (392)
                      .+|++|++.|
T Consensus        88 ~ld~lv~nAg   97 (258)
T PRK07533         88 RLDFLLHSIA   97 (258)
T ss_pred             CCCEEEEcCc
Confidence            6899998765

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=95.26  E-value=0.13  Score=46.34  Aligned_cols=91  Identities=20%  Similarity=0.199  Sum_probs=60.5

Q ss_pred             CCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHH-HhcCCcEE--------------EeCCCCcccc--
Q 016265          230 FSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFL-KSLGADLA--------------IDYTKDNFED--  292 (392)
Q Consensus       230 ~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~-~~~G~~~v--------------i~~~~~~~~~--  292 (392)
                      ..++.+||+.|  .|.|.-++.+|.  .|.+|+.++.++.-.+.+ ++.|....              ++....++.+  
T Consensus        32 ~~~~~rvLd~G--CG~G~da~~LA~--~G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~  107 (213)
T TIGR03840        32 LPAGARVFVPL--CGKSLDLAWLAE--QGHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALT  107 (213)
T ss_pred             CCCCCeEEEeC--CCchhHHHHHHh--CCCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCC
Confidence            35778999997  456999999996  399999999998877764 33332210              1100111111  


Q ss_pred             --CCCCccEEEecCc--c---------HHHHHHhcccCCeEEEEc
Q 016265          293 --LPEKFDVVYDAIG--Q---------CDRAVKAIKEGGTVVALT  324 (392)
Q Consensus       293 --~~~~~D~vid~~G--~---------~~~~~~~l~~~G~iv~~g  324 (392)
                        ..+.||.++|+.-  .         +..+.++|+|||+++.++
T Consensus       108 ~~~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~  152 (213)
T TIGR03840       108 AADLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLIT  152 (213)
T ss_pred             cccCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEE
Confidence              1246899999753  1         468889999999866654

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=95.26  E-value=0.24  Score=44.98  Aligned_cols=97  Identities=19%  Similarity=0.212  Sum_probs=60.6

Q ss_pred             HHHHhcCC-CCCCeEEEEcCCCcHHHHHHHHHHHhcCCe---EEEEeCC----ccc--------HHHHHhcCCcEEEeCC
Q 016265          223 EGLERTGF-SAGKSILVLNGSGGVGSLVIQLAKQVFGAS---RVAATSS----TRN--------LEFLKSLGADLAIDYT  286 (392)
Q Consensus       223 ~al~~~~~-~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~---vv~~~~~----~~~--------~~~~~~~G~~~vi~~~  286 (392)
                      .+++..+. -.+.+|+|+| +|+.|..++..+.. .|++   +++++++    .+|        .++++.++... .+  
T Consensus        14 ~al~~~g~~l~~~rvlvlG-AGgAg~aiA~~L~~-~G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~~~~~-~~--   88 (226)
T cd05311          14 NALKLVGKKIEEVKIVING-AGAAGIAIARLLLA-AGAKPENIVVVDSKGVIYEGREDDLNPDKNEIAKETNPEK-TG--   88 (226)
T ss_pred             HHHHHhCCCccCCEEEEEC-chHHHHHHHHHHHH-cCcCcceEEEEeCCCccccccchhhhHHHHHHHHHhccCc-cc--
Confidence            34444432 4567999998 89999998887776 4875   6677776    343        33445543211 11  


Q ss_pred             CCccccCCCCccEEEecCc--cH-HHHHHhcccCCeEEEEcC
Q 016265          287 KDNFEDLPEKFDVVYDAIG--QC-DRAVKAIKEGGTVVALTG  325 (392)
Q Consensus       287 ~~~~~~~~~~~D~vid~~G--~~-~~~~~~l~~~G~iv~~g~  325 (392)
                       .++.+..+++|++|++++  .+ ...++.++++..++.+..
T Consensus        89 -~~l~~~l~~~dvlIgaT~~G~~~~~~l~~m~~~~ivf~lsn  129 (226)
T cd05311          89 -GTLKEALKGADVFIGVSRPGVVKKEMIKKMAKDPIVFALAN  129 (226)
T ss_pred             -CCHHHHHhcCCEEEeCCCCCCCCHHHHHhhCCCCEEEEeCC
Confidence             123233346899999985  22 567777777776665553

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>PRK07904 short chain dehydrogenase; Provisional

Probab=95.26  E-value=0.095  Score=48.27  Aligned_cols=76  Identities=22%  Similarity=0.255  Sum_probs=47.2

Q ss_pred             CCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCccc-HHH----HHhcCC-c-EEE--eCCCCc-c----ccC--
Q 016265          230 FSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRN-LEF----LKSLGA-D-LAI--DYTKDN-F----EDL--  293 (392)
Q Consensus       230 ~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~-~~~----~~~~G~-~-~vi--~~~~~~-~----~~~--  293 (392)
                      +..+.+|+|+||+|++|...++-+....|++|+++++++++ ++.    ++..+. + +++  |..+.. .    .+.  
T Consensus         5 ~~~~~~vlItGas~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~   84 (253)
T PRK07904          5 VGNPQTILLLGGTSEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAGASSVEVIDFDALDTDSHPKVIDAAFA   84 (253)
T ss_pred             cCCCcEEEEEcCCcHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcCCCceEEEEecCCChHHHHHHHHHHHh
Confidence            45678999999999999998875444235899998887765 433    333342 1 223  332221 1    111  


Q ss_pred             CCCccEEEecCc
Q 016265          294 PEKFDVVYDAIG  305 (392)
Q Consensus       294 ~~~~D~vid~~G  305 (392)
                      .+++|++|.+.|
T Consensus        85 ~g~id~li~~ag   96 (253)
T PRK07904         85 GGDVDVAIVAFG   96 (253)
T ss_pred             cCCCCEEEEeee
Confidence            147999988766

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

Probab=95.24  E-value=0.35  Score=43.75  Aligned_cols=98  Identities=26%  Similarity=0.293  Sum_probs=63.3

Q ss_pred             HHhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcC--CeEEEEeCCcccHHHHHhcCC----c---EEEeCCCCccccCCC
Q 016265          225 LERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFG--ASRVAATSSTRNLEFLKSLGA----D---LAIDYTKDNFEDLPE  295 (392)
Q Consensus       225 l~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G--~~vv~~~~~~~~~~~~~~~G~----~---~vi~~~~~~~~~~~~  295 (392)
                      +......++.+|+-+| +|. |..+..+++. .+  .+++.++.++...+.+++.-.    .   .++..+..+.....+
T Consensus        44 ~~~~~~~~~~~vldiG-~G~-G~~~~~l~~~-~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~  120 (239)
T PRK00216         44 IKWLGVRPGDKVLDLA-CGT-GDLAIALAKA-VGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDN  120 (239)
T ss_pred             HHHhCCCCCCeEEEeC-CCC-CHHHHHHHHH-cCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCCC
Confidence            3444566788999997 666 8888889887 44  788888988887777765321    1   111111111111234


Q ss_pred             CccEEEecCc---------cHHHHHHhcccCCeEEEEcC
Q 016265          296 KFDVVYDAIG---------QCDRAVKAIKEGGTVVALTG  325 (392)
Q Consensus       296 ~~D~vid~~G---------~~~~~~~~l~~~G~iv~~g~  325 (392)
                      .+|+|+...+         .+..+.++|+++|+++.+..
T Consensus       121 ~~D~I~~~~~l~~~~~~~~~l~~~~~~L~~gG~li~~~~  159 (239)
T PRK00216        121 SFDAVTIAFGLRNVPDIDKALREMYRVLKPGGRLVILEF  159 (239)
T ss_pred             CccEEEEecccccCCCHHHHHHHHHHhccCCcEEEEEEe
Confidence            6899875422         14778889999999987643

>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase

Probab=95.24  E-value=0.25  Score=47.34  Aligned_cols=91  Identities=19%  Similarity=0.244  Sum_probs=57.3

Q ss_pred             eEEEEcCCCcHHHHHHHHHHHhcC----CeEEEEeC--CcccHHHHHhcCCc--------------EEEeCCC------C
Q 016265          235 SILVLNGSGGVGSLVIQLAKQVFG----ASRVAATS--STRNLEFLKSLGAD--------------LAIDYTK------D  288 (392)
Q Consensus       235 ~VlI~Ga~G~vG~~aiqlak~~~G----~~vv~~~~--~~~~~~~~~~~G~~--------------~vi~~~~------~  288 (392)
                      +|.|.| .|.+|....+++.. .+    .+++.+..  +.+.+.++.++.-.              .+++.+.      .
T Consensus         1 ~IaInG-fGrIGR~vlr~l~e-~~~~~~~~vvaInd~~~~~~~ayll~yDS~hg~~~~~v~~~~~~l~v~g~~i~v~~~~   78 (325)
T TIGR01532         1 RVAING-FGRIGRNVLRALYE-SGERLGIEVVALNELADQASMAHLLRYDTSHGRFPGEVKVDGDCLHVNGDCIRVLHSP   78 (325)
T ss_pred             CEEEEC-CCHHHHHHHHHHHh-cCCCCCeEEEEEecCCCHHHHHHHHhhCccCCCCCCcEEEeCCEEEECCeEEEEEEcC
Confidence            478998 69999999998765 23    55665543  33344555443210              1111111      1


Q ss_pred             ccccC---CCCccEEEecCcc---HHHHHHhcccCCeEEEEcCCC
Q 016265          289 NFEDL---PEKFDVVYDAIGQ---CDRAVKAIKEGGTVVALTGAV  327 (392)
Q Consensus       289 ~~~~~---~~~~D~vid~~G~---~~~~~~~l~~~G~iv~~g~~~  327 (392)
                      +..++   ..++|+||+|+|.   .+.+.++++.|++.|.++.+.
T Consensus        79 ~p~~~~w~~~gvDiVie~tG~~~s~e~a~~~l~aGa~~V~~SaP~  123 (325)
T TIGR01532        79 TPEALPWRALGVDLVLDCTGVYGNREQGERHIRAGAKRVLFSHPG  123 (325)
T ss_pred             ChhhccccccCCCEEEEccchhccHHHHHHHHHcCCeEEEecCCC
Confidence            11111   1389999999993   478888999999999998764

Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.

>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional

Probab=95.23  E-value=0.2  Score=45.70  Aligned_cols=73  Identities=21%  Similarity=0.279  Sum_probs=47.7

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHH----HhcCCcE-EE--eCCCCc-ccc-------CCCC
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFL----KSLGADL-AI--DYTKDN-FED-------LPEK  296 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~----~~~G~~~-vi--~~~~~~-~~~-------~~~~  296 (392)
                      .+.+|+|+||+|++|...++.... .|.+++++++++++.+.+    ++.+... .+  |..+.. ..+       ..++
T Consensus         3 ~~~~vlItG~sg~iG~~la~~l~~-~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~   81 (258)
T PRK12429          3 KGKVALVTGAASGIGLEIALALAK-EGAKVVIADLNDEAAAAAAEALQKAGGKAIGVAMDVTDEEAINAGIDYAVETFGG   81 (258)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHH-CCCeEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            367999999999999998887766 499999998877765443    2223221 22  322211 111       1246


Q ss_pred             ccEEEecCc
Q 016265          297 FDVVYDAIG  305 (392)
Q Consensus       297 ~D~vid~~G  305 (392)
                      +|++|.+.|
T Consensus        82 ~d~vi~~a~   90 (258)
T PRK12429         82 VDILVNNAG   90 (258)
T ss_pred             CCEEEECCC
Confidence            899998876

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=95.22  E-value=0.2  Score=46.27  Aligned_cols=96  Identities=19%  Similarity=0.241  Sum_probs=64.6

Q ss_pred             HHhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCc-EEEeCCCCccccCCCCccEEEec
Q 016265          225 LERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGAD-LAIDYTKDNFEDLPEKFDVVYDA  303 (392)
Q Consensus       225 l~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~-~vi~~~~~~~~~~~~~~D~vid~  303 (392)
                      +....++++++||=+| + |.|..+..+++...+.+++.++.++.-++.+++.-.. .++..+-..+. ....+|+|+..
T Consensus        24 l~~~~~~~~~~vLDiG-c-G~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~d~~~~~-~~~~fD~v~~~  100 (258)
T PRK01683         24 LARVPLENPRYVVDLG-C-GPGNSTELLVERWPAARITGIDSSPAMLAEARSRLPDCQFVEADIASWQ-PPQALDLIFAN  100 (258)
T ss_pred             HhhCCCcCCCEEEEEc-c-cCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCCCCeEEECchhccC-CCCCccEEEEc
Confidence            3455678899999997 4 4578888888774357899999998888877654321 22222211221 23479999865


Q ss_pred             Cc---------cHHHHHHhcccCCeEEEE
Q 016265          304 IG---------QCDRAVKAIKEGGTVVAL  323 (392)
Q Consensus       304 ~G---------~~~~~~~~l~~~G~iv~~  323 (392)
                      ..         .+..+.++|++||+++..
T Consensus       101 ~~l~~~~d~~~~l~~~~~~LkpgG~~~~~  129 (258)
T PRK01683        101 ASLQWLPDHLELFPRLVSLLAPGGVLAVQ  129 (258)
T ss_pred             cChhhCCCHHHHHHHHHHhcCCCcEEEEE
Confidence            33         147788899999998775

>PRK09072 short chain dehydrogenase; Provisional

Probab=95.21  E-value=0.075  Score=49.04  Aligned_cols=43  Identities=26%  Similarity=0.391  Sum_probs=35.1

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHH
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLK  275 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~  275 (392)
                      ++.+++|+||+|++|...+..+.. .|++|+++++++++.+.+.
T Consensus         4 ~~~~vlItG~s~~iG~~ia~~l~~-~G~~V~~~~r~~~~~~~~~   46 (263)
T PRK09072          4 KDKRVLLTGASGGIGQALAEALAA-AGARLLLVGRNAEKLEALA   46 (263)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHH-CCCEEEEEECCHHHHHHHH
Confidence            467899999999999988877666 5999999998877665543

>PRK07326 short chain dehydrogenase; Provisional

Probab=95.20  E-value=0.093  Score=47.42  Aligned_cols=73  Identities=22%  Similarity=0.306  Sum_probs=47.9

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHH-HhcC---CcEEE--eCCCC-cccc-------CCCCc
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFL-KSLG---ADLAI--DYTKD-NFED-------LPEKF  297 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~-~~~G---~~~vi--~~~~~-~~~~-------~~~~~  297 (392)
                      .+.+++|+||+|++|...++.+.. .|++|+++++++++++.+ +++.   .-+.+  |..+. .+.+       ...++
T Consensus         5 ~~~~ilItGatg~iG~~la~~l~~-~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~   83 (237)
T PRK07326          5 KGKVALITGGSKGIGFAIAEALLA-EGYKVAITARDQKELEEAAAELNNKGNVLGLAADVRDEADVQRAVDAIVAAFGGL   83 (237)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHH-CCCEEEEeeCCHHHHHHHHHHHhccCcEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence            468999999999999998887766 499999988877765544 3332   11222  22221 1111       12378


Q ss_pred             cEEEecCc
Q 016265          298 DVVYDAIG  305 (392)
Q Consensus       298 D~vid~~G  305 (392)
                      |++|.+.|
T Consensus        84 d~vi~~ag   91 (237)
T PRK07326         84 DVLIANAG   91 (237)
T ss_pred             CEEEECCC
Confidence            99998865

>PRK06194 hypothetical protein; Provisional

Probab=95.16  E-value=0.097  Score=48.95  Aligned_cols=73  Identities=21%  Similarity=0.375  Sum_probs=46.9

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHH-Hh---cCCcE-EE--eCCCC-ccccC-------CCC
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFL-KS---LGADL-AI--DYTKD-NFEDL-------PEK  296 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~-~~---~G~~~-vi--~~~~~-~~~~~-------~~~  296 (392)
                      .+.++||+||+|++|...+..+.. .|++|++++++.++++.. .+   .|... ++  |..+. .+.+.       .++
T Consensus         5 ~~k~vlVtGasggIG~~la~~l~~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~g~   83 (287)
T PRK06194          5 AGKVAVITGAASGFGLAFARIGAA-LGMKLVLADVQQDALDRAVAELRAQGAEVLGVRTDVSDAAQVEALADAALERFGA   83 (287)
T ss_pred             CCCEEEEeCCccHHHHHHHHHHHH-CCCEEEEEeCChHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence            367899999999999998877666 599999988876654433 22   23322 22  22221 11111       235


Q ss_pred             ccEEEecCc
Q 016265          297 FDVVYDAIG  305 (392)
Q Consensus       297 ~D~vid~~G  305 (392)
                      +|++|.+.|
T Consensus        84 id~vi~~Ag   92 (287)
T PRK06194         84 VHLLFNNAG   92 (287)
T ss_pred             CCEEEECCC
Confidence            899999876

>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=95.14  E-value=0.056  Score=40.96  Aligned_cols=79  Identities=24%  Similarity=0.242  Sum_probs=53.2

Q ss_pred             CcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcE---EEeCCCCccccCCCCccEEEecCc---------cHHHH
Q 016265          243 GGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADL---AIDYTKDNFEDLPEKFDVVYDAIG---------QCDRA  310 (392)
Q Consensus       243 G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~---vi~~~~~~~~~~~~~~D~vid~~G---------~~~~~  310 (392)
                      .+.|..+..+++. .+.+++.++.+++.++.+++.....   +...+..++.-..+.||+|+....         .++++
T Consensus         5 ~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~~~~~~~l~e~   83 (95)
T PF08241_consen    5 CGTGRFAAALAKR-GGASVTGIDISEEMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHLEDPEAALREI   83 (95)
T ss_dssp             -TTSHHHHHHHHT-TTCEEEEEES-HHHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHGGGSSHHHHHHHHH
T ss_pred             CcCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHhcccccCchheeehHHhCccccccccccccccceeeccCHHHHHHHH
Confidence            3478999999986 5889999999999888887654332   333222223222457999987643         14789


Q ss_pred             HHhcccCCeEEE
Q 016265          311 VKAIKEGGTVVA  322 (392)
Q Consensus       311 ~~~l~~~G~iv~  322 (392)
                      .+.|+|||+++.
T Consensus        84 ~rvLk~gG~l~~   95 (95)
T PF08241_consen   84 YRVLKPGGRLVI   95 (95)
T ss_dssp             HHHEEEEEEEEE
T ss_pred             HHHcCcCeEEeC
Confidence            999999999873

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....

>PRK12828 short chain dehydrogenase; Provisional

Probab=95.10  E-value=0.091  Score=47.34  Aligned_cols=73  Identities=18%  Similarity=0.255  Sum_probs=47.0

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHH----HHhcCCcEE-EeCCCC-ccc----c---CCCCcc
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEF----LKSLGADLA-IDYTKD-NFE----D---LPEKFD  298 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~----~~~~G~~~v-i~~~~~-~~~----~---~~~~~D  298 (392)
                      +|.++||+||+|++|...++.+.. .|+++++++++.++...    ++..+...+ .|..+. ...    +   ...++|
T Consensus         6 ~~k~vlItGatg~iG~~la~~l~~-~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d   84 (239)
T PRK12828          6 QGKVVAITGGFGGLGRATAAWLAA-RGARVALIGRGAAPLSQTLPGVPADALRIGGIDLVDPQAARRAVDEVNRQFGRLD   84 (239)
T ss_pred             CCCEEEEECCCCcHhHHHHHHHHH-CCCeEEEEeCChHhHHHHHHHHhhcCceEEEeecCCHHHHHHHHHHHHHHhCCcC
Confidence            478999999999999998887766 49999999887665332    222333221 232221 111    1   123689


Q ss_pred             EEEecCc
Q 016265          299 VVYDAIG  305 (392)
Q Consensus       299 ~vid~~G  305 (392)
                      ++|.+.|
T Consensus        85 ~vi~~ag   91 (239)
T PRK12828         85 ALVNIAG   91 (239)
T ss_pred             EEEECCc
Confidence            9998876

>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase

Probab=95.08  E-value=0.038  Score=54.42  Aligned_cols=87  Identities=28%  Similarity=0.317  Sum_probs=54.6

Q ss_pred             EEEEcCCCcHHHHHHHHHHHhcCC-eEEEEeCCcccHHHHHh--cCCc---EEEeCCCC-ccccCCCCccEEEecCcc--
Q 016265          236 ILVLNGSGGVGSLVIQLAKQVFGA-SRVAATSSTRNLEFLKS--LGAD---LAIDYTKD-NFEDLPEKFDVVYDAIGQ--  306 (392)
Q Consensus       236 VlI~Ga~G~vG~~aiqlak~~~G~-~vv~~~~~~~~~~~~~~--~G~~---~vi~~~~~-~~~~~~~~~D~vid~~G~--  306 (392)
                      |+|+|+ |.+|..+++.+...... ++++++++.++.+.+.+  .+..   ..+|..+. ...+..++.|+||+|+|.  
T Consensus         1 IlvlG~-G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~~gp~~   79 (386)
T PF03435_consen    1 ILVLGA-GRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKLLGDRVEAVQVDVNDPESLAELLRGCDVVINCAGPFF   79 (386)
T ss_dssp             EEEE---SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT--TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-SSGGG
T ss_pred             CEEEcC-cHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhccccceeEEEEecCCHHHHHHHHhcCCEEEECCccch
Confidence            789997 99999999988764334 78888999998776653  2221   23343332 234445678999999983  


Q ss_pred             -HHHHHHhcccCCeEEEE
Q 016265          307 -CDRAVKAIKEGGTVVAL  323 (392)
Q Consensus       307 -~~~~~~~l~~~G~iv~~  323 (392)
                       ...+-.|++.|-.++..
T Consensus        80 ~~~v~~~~i~~g~~yvD~   97 (386)
T PF03435_consen   80 GEPVARACIEAGVHYVDT   97 (386)
T ss_dssp             HHHHHHHHHHHT-EEEES
T ss_pred             hHHHHHHHHHhCCCeecc
Confidence             34455566677777773

Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.

>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type

Probab=95.08  E-value=0.094  Score=49.34  Aligned_cols=72  Identities=14%  Similarity=0.093  Sum_probs=46.6

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCC-eEEEEeCCcccHHHH-HhcCCcE-EEeCCC-CccccCCCCccEEEecCc
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGA-SRVAATSSTRNLEFL-KSLGADL-AIDYTK-DNFEDLPEKFDVVYDAIG  305 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~-~vv~~~~~~~~~~~~-~~~G~~~-vi~~~~-~~~~~~~~~~D~vid~~G  305 (392)
                      .+.+|+|+| +|+.|.+++..+... |+ +++++.++.+|.+.+ ++++... +..... ++.......+|+||+|+.
T Consensus       124 ~~k~vlvlG-aGGaarai~~aL~~~-G~~~i~I~nRt~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~DiVInaTp  199 (282)
T TIGR01809       124 AGFRGLVIG-AGGTSRAAVYALASL-GVTDITVINRNPDKLSRLVDLGVQVGVITRLEGDSGGLAIEKAAEVLVSTVP  199 (282)
T ss_pred             CCceEEEEc-CcHHHHHHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhhhcCcceeccchhhhhhcccCCCEEEECCC
Confidence            578999998 899999988877774 86 567777887776554 3443211 111111 112223357899999976

This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.

>PRK08017 oxidoreductase; Provisional

Probab=95.07  E-value=0.06  Score=49.31  Aligned_cols=71  Identities=21%  Similarity=0.309  Sum_probs=51.0

Q ss_pred             CeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEE-EeCCCCc-c----cc----CCCCccEEEec
Q 016265          234 KSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLA-IDYTKDN-F----ED----LPEKFDVVYDA  303 (392)
Q Consensus       234 ~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~v-i~~~~~~-~----~~----~~~~~D~vid~  303 (392)
                      ++|+|+||+|++|...++.+.. .|++++++.++.++++.+++.|++.+ .|..+.. .    ..    ....+|.++.+
T Consensus         3 k~vlVtGasg~IG~~la~~l~~-~g~~v~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~ii~~   81 (256)
T PRK08017          3 KSVLITGCSSGIGLEAALELKR-RGYRVLAACRKPDDVARMNSLGFTGILLDLDDPESVERAADEVIALTDNRLYGLFNN   81 (256)
T ss_pred             CEEEEECCCChHHHHHHHHHHH-CCCEEEEEeCCHHHhHHHHhCCCeEEEeecCCHHHHHHHHHHHHHhcCCCCeEEEEC
Confidence            5799999999999999988877 49999999998888887777775433 2333221 1    11    12457888887


Q ss_pred             Cc
Q 016265          304 IG  305 (392)
Q Consensus       304 ~G  305 (392)
                      .|
T Consensus        82 ag   83 (256)
T PRK08017         82 AG   83 (256)
T ss_pred             CC
Confidence            65

>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional

Probab=95.06  E-value=0.11  Score=48.62  Aligned_cols=73  Identities=19%  Similarity=0.265  Sum_probs=45.7

Q ss_pred             CCCeEEEEcCC--CcHHHHHHHHHHHhcCCeEEEEeCCcc---cHHHH-HhcCCcEEE--eCCCCc-ccc-------CCC
Q 016265          232 AGKSILVLNGS--GGVGSLVIQLAKQVFGASRVAATSSTR---NLEFL-KSLGADLAI--DYTKDN-FED-------LPE  295 (392)
Q Consensus       232 ~g~~VlI~Ga~--G~vG~~aiqlak~~~G~~vv~~~~~~~---~~~~~-~~~G~~~vi--~~~~~~-~~~-------~~~  295 (392)
                      .|++++|+||+  +++|++.++.... .|++|+++.++++   +++.+ +++|....+  |..+.. ..+       ..+
T Consensus         4 ~~k~~lItGas~~~GIG~aiA~~la~-~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~i~~~~g   82 (274)
T PRK08415          4 KGKKGLIVGVANNKSIAYGIAKACFE-QGAELAFTYLNEALKKRVEPIAQELGSDYVYELDVSKPEHFKSLAESLKKDLG   82 (274)
T ss_pred             CCcEEEEECCCCCCCHHHHHHHHHHH-CCCEEEEEecCHHHHHHHHHHHHhcCCceEEEecCCCHHHHHHHHHHHHHHcC
Confidence            47899999986  7999998776655 4999988877642   33333 344533333  333221 111       124


Q ss_pred             CccEEEecCc
Q 016265          296 KFDVVYDAIG  305 (392)
Q Consensus       296 ~~D~vid~~G  305 (392)
                      .+|++|++.|
T Consensus        83 ~iDilVnnAG   92 (274)
T PRK08415         83 KIDFIVHSVA   92 (274)
T ss_pred             CCCEEEECCc
Confidence            6899998876

>PRK07576 short chain dehydrogenase; Provisional

Probab=95.06  E-value=0.11  Score=48.19  Aligned_cols=40  Identities=28%  Similarity=0.465  Sum_probs=33.7

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHH
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLE  272 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~  272 (392)
                      ++.+++|+||+|++|...++.+.. .|++|+++++++++.+
T Consensus         8 ~~k~ilItGasggIG~~la~~l~~-~G~~V~~~~r~~~~~~   47 (264)
T PRK07576          8 AGKNVVVVGGTSGINLGIAQAFAR-AGANVAVASRSQEKVD   47 (264)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHH-CCCEEEEEeCCHHHHH
Confidence            578999999999999998887766 5999999988766544

>PRK12747 short chain dehydrogenase; Provisional

Probab=95.06  E-value=0.19  Score=46.02  Aligned_cols=39  Identities=23%  Similarity=0.252  Sum_probs=30.1

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEe-CCcccH
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAAT-SSTRNL  271 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~-~~~~~~  271 (392)
                      .|.+++|+||+|++|.+.++.... .|+++++.. +..++.
T Consensus         3 ~~k~~lItGas~gIG~~ia~~l~~-~G~~v~~~~~~~~~~~   42 (252)
T PRK12747          3 KGKVALVTGASRGIGRAIAKRLAN-DGALVAIHYGNRKEEA   42 (252)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHH-CCCeEEEEcCCCHHHH
Confidence            468999999999999998887666 499888764 343443

>PLN02928 oxidoreductase family protein

Probab=95.04  E-value=0.073  Score=51.64  Aligned_cols=91  Identities=20%  Similarity=0.299  Sum_probs=60.9

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcC-----CcEEEe--CCCCccccCCCCccEEEecC
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLG-----ADLAID--YTKDNFEDLPEKFDVVYDAI  304 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G-----~~~vi~--~~~~~~~~~~~~~D~vid~~  304 (392)
                      .|.+|+|+| .|.+|...++.++. +|++|++.+++..+.. ...++     .....+  ....++.+.....|+|+.++
T Consensus       158 ~gktvGIiG-~G~IG~~vA~~l~a-fG~~V~~~dr~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~L~ell~~aDiVvl~l  234 (347)
T PLN02928        158 FGKTVFILG-YGAIGIELAKRLRP-FGVKLLATRRSWTSEP-EDGLLIPNGDVDDLVDEKGGHEDIYEFAGEADIVVLCC  234 (347)
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHhh-CCCEEEEECCCCChhh-hhhhccccccccccccccCcccCHHHHHhhCCEEEECC
Confidence            578999998 99999999999998 6999998887533211 11111     000010  01123444556789999886


Q ss_pred             cc-------H-HHHHHhcccCCeEEEEcC
Q 016265          305 GQ-------C-DRAVKAIKEGGTVVALTG  325 (392)
Q Consensus       305 G~-------~-~~~~~~l~~~G~iv~~g~  325 (392)
                      ..       + ...+..|++|..+|.++-
T Consensus       235 Plt~~T~~li~~~~l~~Mk~ga~lINvaR  263 (347)
T PLN02928        235 TLTKETAGIVNDEFLSSMKKGALLVNIAR  263 (347)
T ss_pred             CCChHhhcccCHHHHhcCCCCeEEEECCC
Confidence            51       1 678899999998887753

>PRK07453 protochlorophyllide oxidoreductase; Validated

Probab=95.04  E-value=0.099  Score=49.99  Aligned_cols=42  Identities=19%  Similarity=0.245  Sum_probs=34.1

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHH
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFL  274 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~  274 (392)
                      .+.+++|+||+|++|...++.+.. .|++|+++.++.++.+.+
T Consensus         5 ~~k~vlVTGas~gIG~~~a~~L~~-~G~~V~~~~r~~~~~~~~   46 (322)
T PRK07453          5 AKGTVIITGASSGVGLYAAKALAK-RGWHVIMACRNLKKAEAA   46 (322)
T ss_pred             CCCEEEEEcCCChHHHHHHHHHHH-CCCEEEEEECCHHHHHHH
Confidence            467899999999999998876665 499999998887765543

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=95.03  E-value=0.045  Score=49.94  Aligned_cols=98  Identities=22%  Similarity=0.300  Sum_probs=57.7

Q ss_pred             HhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhc-CCeEEEEeCCcccHHHHHh----cCCcE--EEeCCCCccccCCCCcc
Q 016265          226 ERTGFSAGKSILVLNGSGGVGSLVIQLAKQVF-GASRVAATSSTRNLEFLKS----LGADL--AIDYTKDNFEDLPEKFD  298 (392)
Q Consensus       226 ~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~-G~~vv~~~~~~~~~~~~~~----~G~~~--vi~~~~~~~~~~~~~~D  298 (392)
                      +....++|++||=.|  +|.|.++..+++.+. ..+++.++.+++=++.+++    .|...  .+..+.++..-..+.||
T Consensus        41 ~~~~~~~g~~vLDv~--~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d~sfD  118 (233)
T PF01209_consen   41 KLLGLRPGDRVLDVA--CGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPDNSFD  118 (233)
T ss_dssp             HHHT--S--EEEEET---TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-TT-EE
T ss_pred             hccCCCCCCEEEEeC--CChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCcee
Confidence            445788999999885  556888888888742 2578899999987777753    33221  11112222222235699


Q ss_pred             EEEecCc---------cHHHHHHhcccCCeEEEEcC
Q 016265          299 VVYDAIG---------QCDRAVKAIKEGGTVVALTG  325 (392)
Q Consensus       299 ~vid~~G---------~~~~~~~~l~~~G~iv~~g~  325 (392)
                      +|.-+.|         .+.++.+.|+|||+++.+..
T Consensus       119 ~v~~~fglrn~~d~~~~l~E~~RVLkPGG~l~ile~  154 (233)
T PF01209_consen  119 AVTCSFGLRNFPDRERALREMYRVLKPGGRLVILEF  154 (233)
T ss_dssp             EEEEES-GGG-SSHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             EEEHHhhHHhhCCHHHHHHHHHHHcCCCeEEEEeec
Confidence            9998777         15789999999999887643

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>PRK07063 short chain dehydrogenase; Provisional

Probab=95.03  E-value=0.1  Score=48.02  Aligned_cols=42  Identities=26%  Similarity=0.271  Sum_probs=34.2

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHH
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFL  274 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~  274 (392)
                      .+.+++|+||+|++|...++.... .|++++++++++++.+.+
T Consensus         6 ~~k~vlVtGas~gIG~~~a~~l~~-~G~~vv~~~r~~~~~~~~   47 (260)
T PRK07063          6 AGKVALVTGAAQGIGAAIARAFAR-EGAAVALADLDAALAERA   47 (260)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHH-CCCEEEEEeCCHHHHHHH
Confidence            478999999999999998877666 499999988877665543

>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]

Probab=95.03  E-value=0.07  Score=50.00  Aligned_cols=71  Identities=25%  Similarity=0.317  Sum_probs=46.9

Q ss_pred             CCCCCeEEEEcCCCcHHHHHHHHHHHhcCC-eEEEEeCCcccHHHHH-hcCCcE----EEeCCCCccccCCCCccEEEec
Q 016265          230 FSAGKSILVLNGSGGVGSLVIQLAKQVFGA-SRVAATSSTRNLEFLK-SLGADL----AIDYTKDNFEDLPEKFDVVYDA  303 (392)
Q Consensus       230 ~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~-~vv~~~~~~~~~~~~~-~~G~~~----vi~~~~~~~~~~~~~~D~vid~  303 (392)
                      ..+|++++|+| +||.+.+++.-++.. |+ +++++.++.+|.+.+. .++...    .....  +.... ..+|++|+|
T Consensus       123 ~~~~~~vlilG-AGGAarAv~~aL~~~-g~~~i~V~NRt~~ra~~La~~~~~~~~~~~~~~~~--~~~~~-~~~dliINa  197 (283)
T COG0169         123 DVTGKRVLILG-AGGAARAVAFALAEA-GAKRITVVNRTRERAEELADLFGELGAAVEAAALA--DLEGL-EEADLLINA  197 (283)
T ss_pred             ccCCCEEEEEC-CcHHHHHHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHhhhccccccccccc--ccccc-cccCEEEEC
Confidence            34689999998 999999988888774 85 6777788888866654 343211    11111  11111 158999999


Q ss_pred             Cc
Q 016265          304 IG  305 (392)
Q Consensus       304 ~G  305 (392)
                      +.
T Consensus       198 Tp  199 (283)
T COG0169         198 TP  199 (283)
T ss_pred             CC
Confidence            75

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=95.01  E-value=0.13  Score=40.52  Aligned_cols=86  Identities=23%  Similarity=0.336  Sum_probs=55.2

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCCccccCCCCccEEEecCcc--H-H
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFEDLPEKFDVVYDAIGQ--C-D  308 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~~~~~~~D~vid~~G~--~-~  308 (392)
                      .|.+|||.| +|.+|..-++.+.. .|+++.++....   +..+  +.-...   ...+.+...++|+||-+++.  + +
T Consensus         6 ~~~~vlVvG-gG~va~~k~~~Ll~-~gA~v~vis~~~---~~~~--~~i~~~---~~~~~~~l~~~~lV~~at~d~~~n~   75 (103)
T PF13241_consen    6 KGKRVLVVG-GGPVAARKARLLLE-AGAKVTVISPEI---EFSE--GLIQLI---RREFEEDLDGADLVFAATDDPELNE   75 (103)
T ss_dssp             TT-EEEEEE-ESHHHHHHHHHHCC-CTBEEEEEESSE---HHHH--TSCEEE---ESS-GGGCTTESEEEE-SS-HHHHH
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHh-CCCEEEEECCch---hhhh--hHHHHH---hhhHHHHHhhheEEEecCCCHHHHH
Confidence            578999999 89999998888877 599998888765   2222  211111   12233445689999999984  3 4


Q ss_pred             HHHHhcccCCeEEEEcCCC
Q 016265          309 RAVKAIKEGGTVVALTGAV  327 (392)
Q Consensus       309 ~~~~~l~~~G~iv~~g~~~  327 (392)
                      ...+..+..|.++......
T Consensus        76 ~i~~~a~~~~i~vn~~D~p   94 (103)
T PF13241_consen   76 AIYADARARGILVNVVDDP   94 (103)
T ss_dssp             HHHHHHHHTTSEEEETT-C
T ss_pred             HHHHHHhhCCEEEEECCCc
Confidence            5555556688888775543

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=95.01  E-value=0.056  Score=57.11  Aligned_cols=73  Identities=16%  Similarity=0.381  Sum_probs=52.1

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcc---------------------cHHHHHhcCCcEEEeCC---C
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTR---------------------NLEFLKSLGADLAIDYT---K  287 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~---------------------~~~~~~~~G~~~vi~~~---~  287 (392)
                      .|++|+|+| +|+.|+.++..++. .|.+|++++..+.                     +.+.++++|.+...+..   +
T Consensus       326 ~~~~VaIIG-aGpAGLsaA~~L~~-~G~~V~V~E~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~~  403 (654)
T PRK12769        326 SDKRVAIIG-AGPAGLACADVLAR-NGVAVTVYDRHPEIGGLLTFGIPAFKLDKSLLARRREIFSAMGIEFELNCEVGKD  403 (654)
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHH-CCCeEEEEecCCCCCceeeecCCCccCCHHHHHHHHHHHHHCCeEEECCCEeCCc
Confidence            588999998 99999999999888 4999888876432                     34556778876544321   1


Q ss_pred             CccccCCCCccEEEecCcc
Q 016265          288 DNFEDLPEKFDVVYDAIGQ  306 (392)
Q Consensus       288 ~~~~~~~~~~D~vid~~G~  306 (392)
                      ....+...++|.||.++|.
T Consensus       404 i~~~~~~~~~DavilAtGa  422 (654)
T PRK12769        404 ISLESLLEDYDAVFVGVGT  422 (654)
T ss_pred             CCHHHHHhcCCEEEEeCCC
Confidence            1222333579999999884

>PRK08340 glucose-1-dehydrogenase; Provisional

Probab=95.01  E-value=0.11  Score=47.95  Aligned_cols=70  Identities=26%  Similarity=0.319  Sum_probs=45.1

Q ss_pred             eEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHH----hcCCcEEE--eCCCC-cccc-------CCCCccEE
Q 016265          235 SILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLK----SLGADLAI--DYTKD-NFED-------LPEKFDVV  300 (392)
Q Consensus       235 ~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~----~~G~~~vi--~~~~~-~~~~-------~~~~~D~v  300 (392)
                      +++|+||++++|...++.... .|++|+++.+++++++.+.    +.+..+.+  |..+. .+.+       ..+++|++
T Consensus         2 ~vlItGas~gIG~aia~~l~~-~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~d~~~~~~~~~~~~~~~g~id~l   80 (259)
T PRK08340          2 NVLVTASSRGIGFNVARELLK-KGARVVISSRNEENLEKALKELKEYGEVYAVKADLSDKDDLKNLVKEAWELLGGIDAL   80 (259)
T ss_pred             eEEEEcCCcHHHHHHHHHHHH-cCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEcCCCCHHHHHHHHHHHHHhcCCCCEE
Confidence            689999999999987776666 4999999888877654432    23322223  22221 1111       12468999


Q ss_pred             EecCc
Q 016265          301 YDAIG  305 (392)
Q Consensus       301 id~~G  305 (392)
                      |++.|
T Consensus        81 i~naG   85 (259)
T PRK08340         81 VWNAG   85 (259)
T ss_pred             EECCC
Confidence            98876

>PRK04148 hypothetical protein; Provisional

Probab=95.01  E-value=0.1  Score=43.11  Aligned_cols=73  Identities=16%  Similarity=0.164  Sum_probs=50.9

Q ss_pred             CCCCCCeEEEEcCCCcHHH-HHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCCccccCCCCccEEEecCc
Q 016265          229 GFSAGKSILVLNGSGGVGS-LVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFEDLPEKFDVVYDAIG  305 (392)
Q Consensus       229 ~~~~g~~VlI~Ga~G~vG~-~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~~~~~~~D~vid~~G  305 (392)
                      ....+.++++.| .| .|. .|..|+ . .|.+|++++.++...+.+++.+.+.+.+---..-.++-+++|+++.+-.
T Consensus        13 ~~~~~~kileIG-~G-fG~~vA~~L~-~-~G~~ViaIDi~~~aV~~a~~~~~~~v~dDlf~p~~~~y~~a~liysirp   86 (134)
T PRK04148         13 EKGKNKKIVELG-IG-FYFKVAKKLK-E-SGFDVIVIDINEKAVEKAKKLGLNAFVDDLFNPNLEIYKNAKLIYSIRP   86 (134)
T ss_pred             ccccCCEEEEEE-ec-CCHHHHHHHH-H-CCCEEEEEECCHHHHHHHHHhCCeEEECcCCCCCHHHHhcCCEEEEeCC
Confidence            344568899998 88 786 555555 5 3999999999999999999888765553211111223467899888754

>PRK12937 short chain dehydrogenase; Provisional

Probab=95.00  E-value=0.29  Score=44.38  Aligned_cols=35  Identities=17%  Similarity=0.233  Sum_probs=29.0

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCC
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSS  267 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~  267 (392)
                      ++.+++|+||+|++|...+..... .|++++++.++
T Consensus         4 ~~~~vlItG~~~~iG~~la~~l~~-~g~~v~~~~~~   38 (245)
T PRK12937          4 SNKVAIVTGASRGIGAAIARRLAA-DGFAVAVNYAG   38 (245)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHH-CCCEEEEecCC
Confidence            567999999999999998887766 49988877654

>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.99  E-value=0.31  Score=45.69  Aligned_cols=95  Identities=23%  Similarity=0.264  Sum_probs=65.5

Q ss_pred             ccchhHHHHHHHHHhcCC-CCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCCccc
Q 016265          213 GLPLAIETAYEGLERTGF-SAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFE  291 (392)
Q Consensus       213 ~l~~~~~ta~~al~~~~~-~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~  291 (392)
                      .+||.....+..++..++ -.|.+|+|+|.+.-+|.-.+.++.. .|++|+++.+....                   ..
T Consensus       137 ~~PcTp~ai~~ll~~~~i~l~Gk~vvVIGrs~~VG~pla~lL~~-~gatVtv~~s~t~~-------------------l~  196 (286)
T PRK14175        137 FVPCTPLGIMEILKHADIDLEGKNAVVIGRSHIVGQPVSKLLLQ-KNASVTILHSRSKD-------------------MA  196 (286)
T ss_pred             CCCCcHHHHHHHHHHcCCCCCCCEEEEECCCchhHHHHHHHHHH-CCCeEEEEeCCchh-------------------HH
Confidence            356665556666666553 4689999999666699999999988 59988888754321                   22


Q ss_pred             cCCCCccEEEecCccHH-HHHHhcccCCeEEEEcCCC
Q 016265          292 DLPEKFDVVYDAIGQCD-RAVKAIKEGGTVVALTGAV  327 (392)
Q Consensus       292 ~~~~~~D~vid~~G~~~-~~~~~l~~~G~iv~~g~~~  327 (392)
                      +..+.+|+||.++|... ---+.+++|..++.+|...
T Consensus       197 ~~~~~ADIVIsAvg~p~~i~~~~vk~gavVIDvGi~~  233 (286)
T PRK14175        197 SYLKDADVIVSAVGKPGLVTKDVVKEGAVIIDVGNTP  233 (286)
T ss_pred             HHHhhCCEEEECCCCCcccCHHHcCCCcEEEEcCCCc
Confidence            23356799999998321 1114588888888888654

>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional

Probab=94.97  E-value=0.11  Score=48.07  Aligned_cols=36  Identities=28%  Similarity=0.251  Sum_probs=28.3

Q ss_pred             CCCeEEEEcCCC--cHHHHHHHHHHHhcCCeEEEEeCCc
Q 016265          232 AGKSILVLNGSG--GVGSLVIQLAKQVFGASRVAATSST  268 (392)
Q Consensus       232 ~g~~VlI~Ga~G--~vG~~aiqlak~~~G~~vv~~~~~~  268 (392)
                      .|++++|+||++  ++|.+.++.+.. .|++|+++.+++
T Consensus         7 ~~k~~lITGas~~~GIG~a~a~~la~-~G~~v~~~~r~~   44 (260)
T PRK06603          7 QGKKGLITGIANNMSISWAIAQLAKK-HGAELWFTYQSE   44 (260)
T ss_pred             CCcEEEEECCCCCcchHHHHHHHHHH-cCCEEEEEeCch
Confidence            578999999886  899987766555 499988877653

>PRK06701 short chain dehydrogenase; Provisional

Probab=94.95  E-value=0.26  Score=46.42  Aligned_cols=37  Identities=27%  Similarity=0.335  Sum_probs=30.1

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCc
Q 016265          231 SAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSST  268 (392)
Q Consensus       231 ~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~  268 (392)
                      -.|.++||+||+|++|...+..... .|++|+++.++.
T Consensus        44 ~~~k~iLItGasggIG~~la~~l~~-~G~~V~l~~r~~   80 (290)
T PRK06701         44 LKGKVALITGGDSGIGRAVAVLFAK-EGADIAIVYLDE   80 (290)
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHH-CCCEEEEEeCCc
Confidence            3578999999999999987776655 499998887654

>PRK08628 short chain dehydrogenase; Provisional

Probab=94.93  E-value=0.12  Score=47.50  Aligned_cols=73  Identities=25%  Similarity=0.315  Sum_probs=47.2

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHh---cCCc-EEE--eCCCCc-ccc-------CCCCc
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKS---LGAD-LAI--DYTKDN-FED-------LPEKF  297 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~---~G~~-~vi--~~~~~~-~~~-------~~~~~  297 (392)
                      .|.++||+||+|++|...++.... .|++++++++++.+.+..++   .|.. ..+  |..+.. ...       ...++
T Consensus         6 ~~~~ilItGasggiG~~la~~l~~-~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   84 (258)
T PRK08628          6 KDKVVIVTGGASGIGAAISLRLAE-EGAIPVIFGRSAPDDEFAEELRALQPRAEFVQVDLTDDAQCRDAVEQTVAKFGRI   84 (258)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHH-cCCcEEEEcCChhhHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHhcCCC
Confidence            467999999999999987766655 49999988887766544333   3432 122  222211 111       12468


Q ss_pred             cEEEecCc
Q 016265          298 DVVYDAIG  305 (392)
Q Consensus       298 D~vid~~G  305 (392)
                      |++|.+.|
T Consensus        85 d~vi~~ag   92 (258)
T PRK08628         85 DGLVNNAG   92 (258)
T ss_pred             CEEEECCc
Confidence            99999987

>PLN03075 nicotianamine synthase; Provisional

Probab=94.93  E-value=0.17  Score=47.58  Aligned_cols=93  Identities=17%  Similarity=0.178  Sum_probs=62.7

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHHHHhc-CCeEEEEeCCcccHHHHHhcC-----CcEEEeCCCCcccc---CCCCccEEE
Q 016265          231 SAGKSILVLNGSGGVGSLVIQLAKQVF-GASRVAATSSTRNLEFLKSLG-----ADLAIDYTKDNFED---LPEKFDVVY  301 (392)
Q Consensus       231 ~~g~~VlI~Ga~G~vG~~aiqlak~~~-G~~vv~~~~~~~~~~~~~~~G-----~~~vi~~~~~~~~~---~~~~~D~vi  301 (392)
                      .+.++|+-+| +|+.|+.++.+++.++ +.+++.++.+++..+.+++.-     ...-+.+...+..+   ..++||+||
T Consensus       122 ~~p~~VldIG-cGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF  200 (296)
T PLN03075        122 GVPTKVAFVG-SGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVF  200 (296)
T ss_pred             CCCCEEEEEC-CCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEE
Confidence            4779999998 9999998888886542 446778888888877776532     21212222122111   135799999


Q ss_pred             ecC--c--------cHHHHHHhcccCCeEEEEc
Q 016265          302 DAI--G--------QCDRAVKAIKEGGTVVALT  324 (392)
Q Consensus       302 d~~--G--------~~~~~~~~l~~~G~iv~~g  324 (392)
                      -.+  +        .++...+.|+|||.++.-.
T Consensus       201 ~~ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~  233 (296)
T PLN03075        201 LAALVGMDKEEKVKVIEHLGKHMAPGALLMLRS  233 (296)
T ss_pred             EecccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence            764  1        1478889999999987664

>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]

Probab=94.92  E-value=0.085  Score=50.53  Aligned_cols=85  Identities=22%  Similarity=0.306  Sum_probs=63.2

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCCccccCCCCccEEEecCc-c----
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFEDLPEKFDVVYDAIG-Q----  306 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~~~~~~~D~vid~~G-~----  306 (392)
                      .|.++.|+| .|.||++.++.++. +|++++.-++++. .+..+..++.++    +  +.++.+..|++.-... .    
T Consensus       145 ~gktvGIiG-~GrIG~avA~r~~~-Fgm~v~y~~~~~~-~~~~~~~~~~y~----~--l~ell~~sDii~l~~Plt~~T~  215 (324)
T COG1052         145 RGKTLGIIG-LGRIGQAVARRLKG-FGMKVLYYDRSPN-PEAEKELGARYV----D--LDELLAESDIISLHCPLTPETR  215 (324)
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHhc-CCCEEEEECCCCC-hHHHhhcCceec----c--HHHHHHhCCEEEEeCCCChHHh
Confidence            489999998 99999999999996 8999999998765 333344444432    1  4455567788877654 1    


Q ss_pred             -H--HHHHHhcccCCeEEEEcC
Q 016265          307 -C--DRAVKAIKEGGTVVALTG  325 (392)
Q Consensus       307 -~--~~~~~~l~~~G~iv~~g~  325 (392)
                       +  ...++.|++++.+|..+-
T Consensus       216 hLin~~~l~~mk~ga~lVNtaR  237 (324)
T COG1052         216 HLINAEELAKMKPGAILVNTAR  237 (324)
T ss_pred             hhcCHHHHHhCCCCeEEEECCC
Confidence             2  678889999999987753

>PRK08862 short chain dehydrogenase; Provisional

Probab=94.92  E-value=0.12  Score=46.77  Aligned_cols=73  Identities=12%  Similarity=0.167  Sum_probs=47.7

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHH----HhcCCcE-EE--eCCCC-cccc--------CCC
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFL----KSLGADL-AI--DYTKD-NFED--------LPE  295 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~----~~~G~~~-vi--~~~~~-~~~~--------~~~  295 (392)
                      .|.+++|+||++++|.+.+.-... .|++++++.+++++++.+    ++.|.+. .+  |..+. ...+        .+.
T Consensus         4 ~~k~~lVtGas~GIG~aia~~la~-~G~~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~   82 (227)
T PRK08862          4 KSSIILITSAGSVLGRTISCHFAR-LGATLILCDQDQSALKDTYEQCSALTDNVYSFQLKDFSQESIRHLFDAIEQQFNR   82 (227)
T ss_pred             CCeEEEEECCccHHHHHHHHHHHH-CCCEEEEEcCCHHHHHHHHHHHHhcCCCeEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence            478999999999999987766655 499999988877766543    2335332 22  22221 1111        122


Q ss_pred             CccEEEecCc
Q 016265          296 KFDVVYDAIG  305 (392)
Q Consensus       296 ~~D~vid~~G  305 (392)
                      .+|++|.+.|
T Consensus        83 ~iD~li~nag   92 (227)
T PRK08862         83 APDVLVNNWT   92 (227)
T ss_pred             CCCEEEECCc
Confidence            6999999875

>PRK07985 oxidoreductase; Provisional

Probab=94.90  E-value=0.27  Score=46.45  Aligned_cols=35  Identities=20%  Similarity=0.250  Sum_probs=28.9

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCC
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSS  267 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~  267 (392)
                      .|.+++|+||+|++|...++.+.. .|++|+++.++
T Consensus        48 ~~k~vlITGas~gIG~aia~~L~~-~G~~Vi~~~~~   82 (294)
T PRK07985         48 KDRKALVTGGDSGIGRAAAIAYAR-EGADVAISYLP   82 (294)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHH-CCCEEEEecCC
Confidence            567999999999999998877766 49998887643

>PRK06125 short chain dehydrogenase; Provisional

Probab=94.88  E-value=0.13  Score=47.30  Aligned_cols=73  Identities=23%  Similarity=0.324  Sum_probs=47.6

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHH----h-cCCc-EEE--eCCCC-ccc---cCCCCccE
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLK----S-LGAD-LAI--DYTKD-NFE---DLPEKFDV  299 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~----~-~G~~-~vi--~~~~~-~~~---~~~~~~D~  299 (392)
                      .|.+++|+|++|++|...++.... .|++|+++.++.++.+.+.    + .+.. ..+  |..+. .+.   +....+|+
T Consensus         6 ~~k~vlItG~~~giG~~ia~~l~~-~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~g~id~   84 (259)
T PRK06125          6 AGKRVLITGASKGIGAAAAEAFAA-EGCHLHLVARDADALEALAADLRAAHGVDVAVHALDLSSPEAREQLAAEAGDIDI   84 (259)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHH-cCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHHHhCCCCE
Confidence            478999999999999998887766 4999999988777655432    1 2322 222  22221 111   11246899


Q ss_pred             EEecCc
Q 016265          300 VYDAIG  305 (392)
Q Consensus       300 vid~~G  305 (392)
                      +|.+.|
T Consensus        85 lv~~ag   90 (259)
T PRK06125         85 LVNNAG   90 (259)
T ss_pred             EEECCC
Confidence            999876

>PRK08643 acetoin reductase; Validated

Probab=94.88  E-value=0.12  Score=47.29  Aligned_cols=72  Identities=17%  Similarity=0.204  Sum_probs=47.2

Q ss_pred             CCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHH----hcCCcE-EE--eCCCCc-c----cc---CCCCc
Q 016265          233 GKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLK----SLGADL-AI--DYTKDN-F----ED---LPEKF  297 (392)
Q Consensus       233 g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~----~~G~~~-vi--~~~~~~-~----~~---~~~~~  297 (392)
                      +.+++|+||+|++|...++.+.. .|+++++++++.++.+.+.    +.+... .+  |..+.. .    .+   ..+++
T Consensus         2 ~k~~lItGas~giG~~la~~l~~-~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i   80 (256)
T PRK08643          2 SKVALVTGAGQGIGFAIAKRLVE-DGFKVAIVDYNEETAQAAADKLSKDGGKAIAVKADVSDRDQVFAAVRQVVDTFGDL   80 (256)
T ss_pred             CCEEEEECCCChHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence            56899999999999998887766 5999999988776654432    233221 12  322221 1    11   12468


Q ss_pred             cEEEecCc
Q 016265          298 DVVYDAIG  305 (392)
Q Consensus       298 D~vid~~G  305 (392)
                      |++|.+.|
T Consensus        81 d~vi~~ag   88 (256)
T PRK08643         81 NVVVNNAG   88 (256)
T ss_pred             CEEEECCC
Confidence            99999876

>PRK05717 oxidoreductase; Validated

Probab=94.86  E-value=0.13  Score=47.26  Aligned_cols=73  Identities=18%  Similarity=0.215  Sum_probs=46.9

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHH-HhcCCcE-E--EeCCCCc-c----ccC---CCCccE
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFL-KSLGADL-A--IDYTKDN-F----EDL---PEKFDV  299 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~-~~~G~~~-v--i~~~~~~-~----~~~---~~~~D~  299 (392)
                      .|.+++|+||+|++|...+..... .|+++++++++..+.+.+ ++++... .  .|..+.. .    .+.   -+.+|+
T Consensus         9 ~~k~vlItG~sg~IG~~~a~~l~~-~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~id~   87 (255)
T PRK05717          9 NGRVALVTGAARGIGLGIAAWLIA-EGWQVVLADLDRERGSKVAKALGENAWFIAMDVADEAQVAAGVAEVLGQFGRLDA   87 (255)
T ss_pred             CCCEEEEeCCcchHHHHHHHHHHH-cCCEEEEEcCCHHHHHHHHHHcCCceEEEEccCCCHHHHHHHHHHHHHHhCCCCE
Confidence            478999999999999987777666 499998888776654443 3444321 1  2322211 1    111   235899


Q ss_pred             EEecCc
Q 016265          300 VYDAIG  305 (392)
Q Consensus       300 vid~~G  305 (392)
                      +|.+.|
T Consensus        88 li~~ag   93 (255)
T PRK05717         88 LVCNAA   93 (255)
T ss_pred             EEECCC
Confidence            998876

>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated

Probab=94.83  E-value=0.061  Score=53.25  Aligned_cols=73  Identities=25%  Similarity=0.336  Sum_probs=47.4

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHH-HhcCCc-EE--EeCCCC-ccccCCCCccEEEecCc
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFL-KSLGAD-LA--IDYTKD-NFEDLPEKFDVVYDAIG  305 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~-~~~G~~-~v--i~~~~~-~~~~~~~~~D~vid~~G  305 (392)
                      .|++|+|+||+|++|.+.+..... .|++++++++++++++.. ...+.. ..  .|..+. ...+..+++|++|.+.|
T Consensus       177 ~gK~VLITGASgGIG~aLA~~La~-~G~~Vi~l~r~~~~l~~~~~~~~~~v~~v~~Dvsd~~~v~~~l~~IDiLInnAG  254 (406)
T PRK07424        177 KGKTVAVTGASGTLGQALLKELHQ-QGAKVVALTSNSDKITLEINGEDLPVKTLHWQVGQEAALAELLEKVDILIINHG  254 (406)
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHhhcCCCeEEEEeeCCCHHHHHHHhCCCCEEEECCC
Confidence            478999999999999998876655 499999988876655432 111111 12  233222 22233457999998765

>PRK06197 short chain dehydrogenase; Provisional

Probab=94.83  E-value=0.12  Score=49.00  Aligned_cols=40  Identities=20%  Similarity=0.204  Sum_probs=32.9

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHH
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLE  272 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~  272 (392)
                      .|.+|+|+||+|++|...++.... .|++++++.++.++.+
T Consensus        15 ~~k~vlItGas~gIG~~~a~~l~~-~G~~vi~~~r~~~~~~   54 (306)
T PRK06197         15 SGRVAVVTGANTGLGYETAAALAA-KGAHVVLAVRNLDKGK   54 (306)
T ss_pred             CCCEEEEcCCCCcHHHHHHHHHHH-CCCEEEEEeCCHHHHH
Confidence            578999999999999998876655 4999988888766644

>PRK05876 short chain dehydrogenase; Provisional

Probab=94.83  E-value=0.13  Score=47.98  Aligned_cols=73  Identities=22%  Similarity=0.350  Sum_probs=47.7

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHH----HhcCCcE-EE--eCCCC-cccc-------CCCC
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFL----KSLGADL-AI--DYTKD-NFED-------LPEK  296 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~----~~~G~~~-vi--~~~~~-~~~~-------~~~~  296 (392)
                      .|.+++|+||+|++|...+..+.. .|++|++++++.++++.+    +..|... .+  |..+. .+.+       ..+.
T Consensus         5 ~~k~vlVTGas~gIG~ala~~La~-~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~   83 (275)
T PRK05876          5 PGRGAVITGGASGIGLATGTEFAR-RGARVVLGDVDKPGLRQAVNHLRAEGFDVHGVMCDVRHREEVTHLADEAFRLLGH   83 (275)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHcCC
Confidence            478999999999999998877666 599999888876665433    2234332 12  32221 1111       1236


Q ss_pred             ccEEEecCc
Q 016265          297 FDVVYDAIG  305 (392)
Q Consensus       297 ~D~vid~~G  305 (392)
                      +|++|++.|
T Consensus        84 id~li~nAg   92 (275)
T PRK05876         84 VDVVFSNAG   92 (275)
T ss_pred             CCEEEECCC
Confidence            899999876

>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional

Probab=94.83  E-value=0.13  Score=47.63  Aligned_cols=36  Identities=17%  Similarity=0.184  Sum_probs=27.8

Q ss_pred             CCCeEEEEcC--CCcHHHHHHHHHHHhcCCeEEEEeCCc
Q 016265          232 AGKSILVLNG--SGGVGSLVIQLAKQVFGASRVAATSST  268 (392)
Q Consensus       232 ~g~~VlI~Ga--~G~vG~~aiqlak~~~G~~vv~~~~~~  268 (392)
                      .|.+++|+||  ++++|.+.++.... .|++|++..+.+
T Consensus         5 ~~k~~lITGa~~~~GIG~a~a~~l~~-~G~~v~~~~~~~   42 (261)
T PRK08690          5 QGKKILITGMISERSIAYGIAKACRE-QGAELAFTYVVD   42 (261)
T ss_pred             CCcEEEEECCCCCCcHHHHHHHHHHH-CCCEEEEEcCcH
Confidence            5789999996  66999997776655 499988876543

>PRK07523 gluconate 5-dehydrogenase; Provisional

Probab=94.81  E-value=0.13  Score=47.25  Aligned_cols=73  Identities=23%  Similarity=0.311  Sum_probs=47.8

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHH----HhcCCcE-EE--eCCCCc-ccc-------CCCC
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFL----KSLGADL-AI--DYTKDN-FED-------LPEK  296 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~----~~~G~~~-vi--~~~~~~-~~~-------~~~~  296 (392)
                      .|.+|||+||+|++|...++.+.. .|++|++..+++++.+.+    ++.|... .+  |..+.. +.+       ....
T Consensus         9 ~~k~vlItGa~g~iG~~ia~~l~~-~G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   87 (255)
T PRK07523          9 TGRRALVTGSSQGIGYALAEGLAQ-AGAEVILNGRDPAKLAAAAESLKGQGLSAHALAFDVTDHDAVRAAIDAFEAEIGP   87 (255)
T ss_pred             CCCEEEEECCcchHHHHHHHHHHH-cCCEEEEEeCCHHHHHHHHHHHHhcCceEEEEEccCCCHHHHHHHHHHHHHhcCC
Confidence            478999999999999998887766 499999888877655433    2333221 22  332211 111       1246


Q ss_pred             ccEEEecCc
Q 016265          297 FDVVYDAIG  305 (392)
Q Consensus       297 ~D~vid~~G  305 (392)
                      +|++|.+.|
T Consensus        88 ~d~li~~ag   96 (255)
T PRK07523         88 IDILVNNAG   96 (255)
T ss_pred             CCEEEECCC
Confidence            899999876

>PRK07774 short chain dehydrogenase; Provisional

Probab=94.80  E-value=0.13  Score=46.78  Aligned_cols=41  Identities=27%  Similarity=0.322  Sum_probs=33.3

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHH
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEF  273 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~  273 (392)
                      .+.+++|+||+|++|...++.... .|++++++.+++++.+.
T Consensus         5 ~~k~vlItGasg~iG~~la~~l~~-~g~~vi~~~r~~~~~~~   45 (250)
T PRK07774          5 DDKVAIVTGAAGGIGQAYAEALAR-EGASVVVADINAEGAER   45 (250)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHH-CCCEEEEEeCCHHHHHH
Confidence            467899999999999998887766 49999999887665433

>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional

Probab=94.79  E-value=0.12  Score=49.45  Aligned_cols=85  Identities=15%  Similarity=0.253  Sum_probs=60.7

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCCccccCCCCccEEEecCcc-----
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFEDLPEKFDVVYDAIGQ-----  306 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~~~~~~~D~vid~~G~-----  306 (392)
                      .|.+|.|+| .|.+|...++.++. +|.++++.++..++..     +.+...  ...++.+.....|+|+.+...     
T Consensus       135 ~g~tvgIvG-~G~IG~~vA~~l~a-fG~~V~~~~~~~~~~~-----~~~~~~--~~~~l~e~l~~aDvvv~~lPlt~~T~  205 (312)
T PRK15469        135 EDFTIGILG-AGVLGSKVAQSLQT-WGFPLRCWSRSRKSWP-----GVQSFA--GREELSAFLSQTRVLINLLPNTPETV  205 (312)
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHH-CCCEEEEEeCCCCCCC-----Cceeec--ccccHHHHHhcCCEEEECCCCCHHHH
Confidence            578999998 99999999999998 6999998886543321     222221  122344555678999988751     


Q ss_pred             --H-HHHHHhcccCCeEEEEcC
Q 016265          307 --C-DRAVKAIKEGGTVVALTG  325 (392)
Q Consensus       307 --~-~~~~~~l~~~G~iv~~g~  325 (392)
                        + ...++.|++|..+|.++-
T Consensus       206 ~li~~~~l~~mk~ga~lIN~aR  227 (312)
T PRK15469        206 GIINQQLLEQLPDGAYLLNLAR  227 (312)
T ss_pred             HHhHHHHHhcCCCCcEEEECCC
Confidence              1 467888999988887753

>PRK07454 short chain dehydrogenase; Provisional

Probab=94.77  E-value=0.16  Score=46.04  Aligned_cols=74  Identities=22%  Similarity=0.208  Sum_probs=48.1

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHH----hcCCcE-EE--eCCCCc-ccc-------CCC
Q 016265          231 SAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLK----SLGADL-AI--DYTKDN-FED-------LPE  295 (392)
Q Consensus       231 ~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~----~~G~~~-vi--~~~~~~-~~~-------~~~  295 (392)
                      ..+.+++|+||+|++|...+..+.. .|.+|+++++++++.+.+.    +.+... .+  |..+.. +..       ...
T Consensus         4 ~~~k~vlItG~sg~iG~~la~~l~~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   82 (241)
T PRK07454          4 NSMPRALITGASSGIGKATALAFAK-AGWDLALVARSQDALEALAAELRSTGVKAAAYSIDLSNPEAIAPGIAELLEQFG   82 (241)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHHHHhCCCcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            3467899999999999998887766 5999999998776654432    223221 22  322211 111       123


Q ss_pred             CccEEEecCc
Q 016265          296 KFDVVYDAIG  305 (392)
Q Consensus       296 ~~D~vid~~G  305 (392)
                      ++|++|.+.|
T Consensus        83 ~id~lv~~ag   92 (241)
T PRK07454         83 CPDVLINNAG   92 (241)
T ss_pred             CCCEEEECCC
Confidence            6899999887

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=94.71  E-value=0.49  Score=47.31  Aligned_cols=98  Identities=22%  Similarity=0.168  Sum_probs=61.5

Q ss_pred             HhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHH----HhcCCcE-E--EeCCCCcccc--CCCC
Q 016265          226 ERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFL----KSLGADL-A--IDYTKDNFED--LPEK  296 (392)
Q Consensus       226 ~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~----~~~G~~~-v--i~~~~~~~~~--~~~~  296 (392)
                      ....+++|++||=.| +| .|-.+.++++.+.+++++.++.++++++.+    +++|.+. +  .+.+......  ..+.
T Consensus       232 ~~L~~~~g~~VLDlc-ag-~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~~  309 (426)
T TIGR00563       232 TWLAPQNEETILDAC-AA-PGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENEQ  309 (426)
T ss_pred             HHhCCCCCCeEEEeC-CC-ccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccccc
Confidence            344678999998886 44 365666777664336888999999987766    4467652 2  2222111111  2346


Q ss_pred             ccEEEe---cCc--c--------------------------HHHHHHhcccCCeEEEEcC
Q 016265          297 FDVVYD---AIG--Q--------------------------CDRAVKAIKEGGTVVALTG  325 (392)
Q Consensus       297 ~D~vid---~~G--~--------------------------~~~~~~~l~~~G~iv~~g~  325 (392)
                      ||.||-   |+|  .                          +..++++|++||++|....
T Consensus       310 fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystc  369 (426)
T TIGR00563       310 FDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATC  369 (426)
T ss_pred             cCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence            999873   444  1                          2457788999999986543

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional

Probab=94.70  E-value=0.12  Score=47.45  Aligned_cols=73  Identities=25%  Similarity=0.285  Sum_probs=46.5

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHH---hcCCcE---EEeCCCCc-ccc-------CCCCc
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLK---SLGADL---AIDYTKDN-FED-------LPEKF  297 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~---~~G~~~---vi~~~~~~-~~~-------~~~~~  297 (392)
                      .+.+++|+||+|++|...++.+.. .|++|+++++++...+..+   ..|.+.   ..|..+.. ..+       ..+++
T Consensus         7 ~~k~vlVtGas~gIG~~la~~l~~-~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   85 (260)
T PRK12823          7 AGKVVVVTGAAQGIGRGVALRAAA-EGARVVLVDRSELVHEVAAELRAAGGEALALTADLETYAGAQAAMAAAVEAFGRI   85 (260)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHH-CCCEEEEEeCchHHHHHHHHHHhcCCeEEEEEEeCCCHHHHHHHHHHHHHHcCCC
Confidence            468999999999999988877666 4999988887643323222   334332   22433321 111       12468


Q ss_pred             cEEEecCc
Q 016265          298 DVVYDAIG  305 (392)
Q Consensus       298 D~vid~~G  305 (392)
                      |++|.+.|
T Consensus        86 d~lv~nAg   93 (260)
T PRK12823         86 DVLINNVG   93 (260)
T ss_pred             eEEEECCc
Confidence            99999876

>PRK08213 gluconate 5-dehydrogenase; Provisional

Probab=94.69  E-value=0.14  Score=46.97  Aligned_cols=73  Identities=30%  Similarity=0.440  Sum_probs=48.5

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHH----hcCCc-EEE--eCCCCc-cc----c---CCCC
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLK----SLGAD-LAI--DYTKDN-FE----D---LPEK  296 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~----~~G~~-~vi--~~~~~~-~~----~---~~~~  296 (392)
                      .|.++||+||+|++|...++.... .|++|++++++.++++.+.    +.+.. ..+  |..+.. +.    +   ...+
T Consensus        11 ~~k~ilItGa~g~IG~~la~~l~~-~G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~Dl~d~~~i~~~~~~~~~~~~~   89 (259)
T PRK08213         11 SGKTALVTGGSRGLGLQIAEALGE-AGARVVLSARKAEELEEAAAHLEALGIDALWIAADVADEADIERLAEETLERFGH   89 (259)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHH-cCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence            478999999999999998887766 5999999988777655443    22322 122  333211 11    1   1246


Q ss_pred             ccEEEecCc
Q 016265          297 FDVVYDAIG  305 (392)
Q Consensus       297 ~D~vid~~G  305 (392)
                      +|++|.+.|
T Consensus        90 id~vi~~ag   98 (259)
T PRK08213         90 VDILVNNAG   98 (259)
T ss_pred             CCEEEECCC
Confidence            899999876

>PLN00141 Tic62-NAD(P)-related group II protein; Provisional

Probab=94.69  E-value=0.093  Score=48.23  Aligned_cols=96  Identities=16%  Similarity=0.164  Sum_probs=60.0

Q ss_pred             CCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhc--CCcEE-EeCCC--CccccCC-CCccEEEec
Q 016265          230 FSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSL--GADLA-IDYTK--DNFEDLP-EKFDVVYDA  303 (392)
Q Consensus       230 ~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~--G~~~v-i~~~~--~~~~~~~-~~~D~vid~  303 (392)
                      -..+.+|+|+||+|.+|...+..+.. .|.+|+++.++.++.......  ++..+ .|..+  ..+.+.. .++|+||.+
T Consensus        14 ~~~~~~ilItGasG~iG~~l~~~L~~-~g~~V~~~~R~~~~~~~~~~~~~~~~~~~~Dl~d~~~~l~~~~~~~~d~vi~~   92 (251)
T PLN00141         14 NVKTKTVFVAGATGRTGKRIVEQLLA-KGFAVKAGVRDVDKAKTSLPQDPSLQIVRADVTEGSDKLVEAIGDDSDAVICA   92 (251)
T ss_pred             cccCCeEEEECCCcHHHHHHHHHHHh-CCCEEEEEecCHHHHHHhcccCCceEEEEeeCCCCHHHHHHHhhcCCCEEEEC
Confidence            34468999999999999998887766 489998888877665433221  22222 24433  1222223 579999988


Q ss_pred             Ccc----------------HHHHHHhccc--CCeEEEEcCC
Q 016265          304 IGQ----------------CDRAVKAIKE--GGTVVALTGA  326 (392)
Q Consensus       304 ~G~----------------~~~~~~~l~~--~G~iv~~g~~  326 (392)
                      .|.                ...+++.++.  .+++|.++..
T Consensus        93 ~g~~~~~~~~~~~~~n~~~~~~ll~a~~~~~~~~iV~iSS~  133 (251)
T PLN00141         93 TGFRRSFDPFAPWKVDNFGTVNLVEACRKAGVTRFILVSSI  133 (251)
T ss_pred             CCCCcCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEEccc
Confidence            762                1234444443  3688887643

>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []

Probab=94.68  E-value=0.16  Score=46.75  Aligned_cols=99  Identities=25%  Similarity=0.376  Sum_probs=62.7

Q ss_pred             HHHhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcC--CeEEEEeCCcccHHHHH----hcCCcEEEe---CC--CCccc-
Q 016265          224 GLERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFG--ASRVAATSSTRNLEFLK----SLGADLAID---YT--KDNFE-  291 (392)
Q Consensus       224 al~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G--~~vv~~~~~~~~~~~~~----~~G~~~vi~---~~--~~~~~-  291 (392)
                      .+...+++||++|+=.|  .|.|.++..+++.+ |  .+|+-.+..+++.+.++    ..|.+..+.   .+  ++.+. 
T Consensus        32 I~~~l~i~pG~~VlEaG--tGSG~lt~~l~r~v-~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~  108 (247)
T PF08704_consen   32 ILMRLDIRPGSRVLEAG--TGSGSLTHALARAV-GPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDE  108 (247)
T ss_dssp             HHHHTT--TT-EEEEE----TTSHHHHHHHHHH-TTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--ST
T ss_pred             HHHHcCCCCCCEEEEec--CCcHHHHHHHHHHh-CCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceecccccc
Confidence            34578899999999876  44588888899886 4  47888888888877664    456542221   11  12231 


Q ss_pred             cCCCCccEEEecCc----cHHHHHHhc-ccCCeEEEEcC
Q 016265          292 DLPEKFDVVYDAIG----QCDRAVKAI-KEGGTVVALTG  325 (392)
Q Consensus       292 ~~~~~~D~vid~~G----~~~~~~~~l-~~~G~iv~~g~  325 (392)
                      +....+|.||-=..    .+..+.++| ++||+++.+..
T Consensus       109 ~~~~~~DavfLDlp~Pw~~i~~~~~~L~~~gG~i~~fsP  147 (247)
T PF08704_consen  109 ELESDFDAVFLDLPDPWEAIPHAKRALKKPGGRICCFSP  147 (247)
T ss_dssp             T-TTSEEEEEEESSSGGGGHHHHHHHE-EEEEEEEEEES
T ss_pred             cccCcccEEEEeCCCHHHHHHHHHHHHhcCCceEEEECC
Confidence            22356887774333    468999999 89999998854

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.

>TIGR00507 aroE shikimate 5-dehydrogenase

Probab=94.68  E-value=0.25  Score=46.15  Aligned_cols=90  Identities=18%  Similarity=0.252  Sum_probs=56.9

Q ss_pred             CCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHH-Hhc---CCcEEEeCCCCccccCCCCccEEEecCc
Q 016265          230 FSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFL-KSL---GADLAIDYTKDNFEDLPEKFDVVYDAIG  305 (392)
Q Consensus       230 ~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~-~~~---G~~~vi~~~~~~~~~~~~~~D~vid~~G  305 (392)
                      ...+.+++|+| +|++|.+.+..+.. .|++++++.++.++.+.+ +++   |....+...+    .....+|+||+|++
T Consensus       114 ~~~~k~vliiG-aGg~g~aia~~L~~-~g~~v~v~~R~~~~~~~la~~~~~~~~~~~~~~~~----~~~~~~DivInatp  187 (270)
T TIGR00507       114 LRPNQRVLIIG-AGGAARAVALPLLK-ADCNVIIANRTVSKAEELAERFQRYGEIQAFSMDE----LPLHRVDLIINATS  187 (270)
T ss_pred             CccCCEEEEEc-CcHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHHHhhcCceEEechhh----hcccCccEEEECCC
Confidence            34578999999 68999998877766 488888888887775444 333   3222222111    11246899999986


Q ss_pred             c-H----H---HHHHhcccCCeEEEEcC
Q 016265          306 Q-C----D---RAVKAIKEGGTVVALTG  325 (392)
Q Consensus       306 ~-~----~---~~~~~l~~~G~iv~~g~  325 (392)
                      . +    +   .....++++..++.+..
T Consensus       188 ~gm~~~~~~~~~~~~~l~~~~~v~D~~y  215 (270)
T TIGR00507       188 AGMSGNIDEPPVPAEKLKEGMVVYDMVY  215 (270)
T ss_pred             CCCCCCCCCCCCCHHHcCCCCEEEEecc
Confidence            2 1    1   12345777777776643

This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.

>PRK07035 short chain dehydrogenase; Provisional

Probab=94.68  E-value=0.15  Score=46.70  Aligned_cols=42  Identities=26%  Similarity=0.387  Sum_probs=34.3

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHH
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFL  274 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~  274 (392)
                      .+.+|+|+||+|++|...++.+.. .|++|+++.++.++.+.+
T Consensus         7 ~~k~vlItGas~gIG~~l~~~l~~-~G~~Vi~~~r~~~~~~~~   48 (252)
T PRK07035          7 TGKIALVTGASRGIGEAIAKLLAQ-QGAHVIVSSRKLDGCQAV   48 (252)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHH
Confidence            367899999999999998888777 499999998876665443

>PRK13403 ketol-acid reductoisomerase; Provisional

Probab=94.66  E-value=0.27  Score=46.78  Aligned_cols=85  Identities=18%  Similarity=0.261  Sum_probs=62.9

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCCccccCCCCccEEEecCcc----
Q 016265          231 SAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFEDLPEKFDVVYDAIGQ----  306 (392)
Q Consensus       231 ~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~~~~~~~D~vid~~G~----  306 (392)
                      -.|.+|.|+| .|.+|.+.++.++. +|.+|++..+.....+.++..|+.. .     ++.+..+..|+|+-++..    
T Consensus        14 LkgKtVGIIG-~GsIG~amA~nL~d-~G~~ViV~~r~~~s~~~A~~~G~~v-~-----sl~Eaak~ADVV~llLPd~~t~   85 (335)
T PRK13403         14 LQGKTVAVIG-YGSQGHAQAQNLRD-SGVEVVVGVRPGKSFEVAKADGFEV-M-----SVSEAVRTAQVVQMLLPDEQQA   85 (335)
T ss_pred             hCcCEEEEEe-EcHHHHHHHHHHHH-CcCEEEEEECcchhhHHHHHcCCEE-C-----CHHHHHhcCCEEEEeCCChHHH
Confidence            4689999998 99999999999998 6999988876655556666777632 1     345556678999988752    


Q ss_pred             --H-HHHHHhcccCCeEEEE
Q 016265          307 --C-DRAVKAIKEGGTVVAL  323 (392)
Q Consensus       307 --~-~~~~~~l~~~G~iv~~  323 (392)
                        + +..+..|++|..++.-
T Consensus        86 ~V~~~eil~~MK~GaiL~f~  105 (335)
T PRK13403         86 HVYKAEVEENLREGQMLLFS  105 (335)
T ss_pred             HHHHHHHHhcCCCCCEEEEC
Confidence              2 4577788887766544

>PRK08264 short chain dehydrogenase; Validated

Probab=94.66  E-value=0.13  Score=46.59  Aligned_cols=70  Identities=21%  Similarity=0.352  Sum_probs=45.7

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCC-eEEEEeCCcccHHHHHhcCCc-EEE--eCCCC-cccc---CCCCccEEEec
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGA-SRVAATSSTRNLEFLKSLGAD-LAI--DYTKD-NFED---LPEKFDVVYDA  303 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~-~vv~~~~~~~~~~~~~~~G~~-~vi--~~~~~-~~~~---~~~~~D~vid~  303 (392)
                      .+.+++|+||+|++|...++.+.. .|. +|++++++.++.+.   .+.. .++  |..+. .+.+   ..+.+|++|.+
T Consensus         5 ~~~~vlItGgsg~iG~~la~~l~~-~G~~~V~~~~r~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~~~~~id~vi~~   80 (238)
T PRK08264          5 KGKVVLVTGANRGIGRAFVEQLLA-RGAAKVYAAARDPESVTD---LGPRVVPLQLDVTDPASVAAAAEAASDVTILVNN   80 (238)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHH-CCcccEEEEecChhhhhh---cCCceEEEEecCCCHHHHHHHHHhcCCCCEEEEC
Confidence            467899999999999998887776 498 88888887665543   3322 122  32221 1111   12358999988


Q ss_pred             Cc
Q 016265          304 IG  305 (392)
Q Consensus       304 ~G  305 (392)
                      .|
T Consensus        81 ag   82 (238)
T PRK08264         81 AG   82 (238)
T ss_pred             CC
Confidence            76

>PRK06483 dihydromonapterin reductase; Provisional

Probab=94.65  E-value=0.18  Score=45.65  Aligned_cols=72  Identities=11%  Similarity=0.185  Sum_probs=46.5

Q ss_pred             CCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCccc-HHHHHhcCCcE-EEeCCCC-cccc-------CCCCccEEEe
Q 016265          233 GKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRN-LEFLKSLGADL-AIDYTKD-NFED-------LPEKFDVVYD  302 (392)
Q Consensus       233 g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~-~~~~~~~G~~~-vi~~~~~-~~~~-------~~~~~D~vid  302 (392)
                      +.++||+||+|++|...++.... .|++++++.+++++ .+.+++.|+.. ..|..+. ...+       ..+++|+++.
T Consensus         2 ~k~vlItGas~gIG~~ia~~l~~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~lv~   80 (236)
T PRK06483          2 PAPILITGAGQRIGLALAWHLLA-QGQPVIVSYRTHYPAIDGLRQAGAQCIQADFSTNAGIMAFIDELKQHTDGLRAIIH   80 (236)
T ss_pred             CceEEEECCCChHHHHHHHHHHH-CCCeEEEEeCCchhHHHHHHHcCCEEEEcCCCCHHHHHHHHHHHHhhCCCccEEEE
Confidence            46899999999999998887666 49999998876543 33444555322 1232221 1111       1236899999


Q ss_pred             cCc
Q 016265          303 AIG  305 (392)
Q Consensus       303 ~~G  305 (392)
                      +.|
T Consensus        81 ~ag   83 (236)
T PRK06483         81 NAS   83 (236)
T ss_pred             CCc
Confidence            876

>PRK08277 D-mannonate oxidoreductase; Provisional

Probab=94.65  E-value=0.15  Score=47.50  Aligned_cols=73  Identities=22%  Similarity=0.349  Sum_probs=47.4

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHH----HhcCCc-EEE--eCCCCc-ccc-------CCCC
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFL----KSLGAD-LAI--DYTKDN-FED-------LPEK  296 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~----~~~G~~-~vi--~~~~~~-~~~-------~~~~  296 (392)
                      .+.+++|+||+|++|+..+..+.. .|++|+++++++++.+.+    ++.|.. ..+  |..+.. ...       .-++
T Consensus         9 ~~k~vlVtGas~giG~~ia~~l~~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~   87 (278)
T PRK08277          9 KGKVAVITGGGGVLGGAMAKELAR-AGAKVAILDRNQEKAEAVVAEIKAAGGEALAVKADVLDKESLEQARQQILEDFGP   87 (278)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence            478999999999999998887766 599999888876654433    223332 122  222211 111       1247


Q ss_pred             ccEEEecCc
Q 016265          297 FDVVYDAIG  305 (392)
Q Consensus       297 ~D~vid~~G  305 (392)
                      +|++|.+.|
T Consensus        88 id~li~~ag   96 (278)
T PRK08277         88 CDILINGAG   96 (278)
T ss_pred             CCEEEECCC
Confidence            899998876

>PRK06720 hypothetical protein; Provisional

Probab=94.65  E-value=0.22  Score=42.98  Aligned_cols=40  Identities=25%  Similarity=0.322  Sum_probs=32.3

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHH
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLE  272 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~  272 (392)
                      .|..++|.||++++|...+..... .|+++++++++.++.+
T Consensus        15 ~gk~~lVTGa~~GIG~aia~~l~~-~G~~V~l~~r~~~~~~   54 (169)
T PRK06720         15 AGKVAIVTGGGIGIGRNTALLLAK-QGAKVIVTDIDQESGQ   54 (169)
T ss_pred             CCCEEEEecCCChHHHHHHHHHHH-CCCEEEEEECCHHHHH
Confidence            578999999999999998876656 4999988887766543

>PRK08589 short chain dehydrogenase; Validated

Probab=94.64  E-value=0.14  Score=47.65  Aligned_cols=72  Identities=22%  Similarity=0.319  Sum_probs=45.9

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHH-H---HhcCCc-E--EEeCCCCc-ccc-------CCCC
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEF-L---KSLGAD-L--AIDYTKDN-FED-------LPEK  296 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~-~---~~~G~~-~--vi~~~~~~-~~~-------~~~~  296 (392)
                      .|.++||+||++++|...++.... .|++|+++.++ ++++. +   ++.+.. .  ..|..+.. ...       ..++
T Consensus         5 ~~k~vlItGas~gIG~aia~~l~~-~G~~vi~~~r~-~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~   82 (272)
T PRK08589          5 ENKVAVITGASTGIGQASAIALAQ-EGAYVLAVDIA-EAVSETVDKIKSNGGKAKAYHVDISDEQQVKDFASEIKEQFGR   82 (272)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHH-CCCEEEEEeCc-HHHHHHHHHHHhcCCeEEEEEeecCCHHHHHHHHHHHHHHcCC
Confidence            478999999999999997776655 49999999887 44332 2   233322 1  22333221 111       1246


Q ss_pred             ccEEEecCc
Q 016265          297 FDVVYDAIG  305 (392)
Q Consensus       297 ~D~vid~~G  305 (392)
                      +|++|++.|
T Consensus        83 id~li~~Ag   91 (272)
T PRK08589         83 VDVLFNNAG   91 (272)
T ss_pred             cCEEEECCC
Confidence            899999876

>PRK12550 shikimate 5-dehydrogenase; Reviewed

Probab=94.61  E-value=0.18  Score=47.15  Aligned_cols=74  Identities=12%  Similarity=0.142  Sum_probs=48.7

Q ss_pred             HHHHhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCC-eEEEEeCCcccHHHH-HhcCCcEEEeCCCCccccCCCCccEE
Q 016265          223 EGLERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGA-SRVAATSSTRNLEFL-KSLGADLAIDYTKDNFEDLPEKFDVV  300 (392)
Q Consensus       223 ~al~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~-~vv~~~~~~~~~~~~-~~~G~~~vi~~~~~~~~~~~~~~D~v  300 (392)
                      .+|+..+...+++|+|+| +||.+.+++..++.. |+ ++.++.++.+|.+.+ +.++.+.    . ...  ....+|+|
T Consensus       112 ~~L~~~~~~~~~~vlilG-aGGaarAi~~aL~~~-g~~~i~i~nR~~~~a~~la~~~~~~~----~-~~~--~~~~~dlv  182 (272)
T PRK12550        112 KLLASYQVPPDLVVALRG-SGGMAKAVAAALRDA-GFTDGTIVARNEKTGKALAELYGYEW----R-PDL--GGIEADIL  182 (272)
T ss_pred             HHHHhcCCCCCCeEEEEC-CcHHHHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHhCCcc----h-hhc--ccccCCEE
Confidence            344444455567999998 899999988877774 87 477788888776655 3444211    1 011  12358999


Q ss_pred             EecCc
Q 016265          301 YDAIG  305 (392)
Q Consensus       301 id~~G  305 (392)
                      |+|+.
T Consensus       183 INaTp  187 (272)
T PRK12550        183 VNVTP  187 (272)
T ss_pred             EECCc
Confidence            99974

>PRK04266 fibrillarin; Provisional

Probab=94.60  E-value=0.47  Score=43.06  Aligned_cols=126  Identities=21%  Similarity=0.247  Sum_probs=71.0

Q ss_pred             HhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhc----CCcEEEeCCCCcc---ccCCCCcc
Q 016265          226 ERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSL----GADLAIDYTKDNF---EDLPEKFD  298 (392)
Q Consensus       226 ~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~----G~~~vi~~~~~~~---~~~~~~~D  298 (392)
                      +...+++|++||=.| +| .|..+..+++...+.+|+.++.+++.++.+.+.    .--..+..+....   ....+.+|
T Consensus        66 ~~l~i~~g~~VlD~G-~G-~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l~~~~D  143 (226)
T PRK04266         66 KNFPIKKGSKVLYLG-AA-SGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHVVEKVD  143 (226)
T ss_pred             hhCCCCCCCEEEEEc-cC-CCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhccccCC
Confidence            457889999998887 33 355667777764235788899888766644322    1112222111111   12235699


Q ss_pred             EEEecCcc-------HHHHHHhcccCCeEEEE-cCCCCCCceEEEEeecHHHHHHHHHHHHCCCcccc
Q 016265          299 VVYDAIGQ-------CDRAVKAIKEGGTVVAL-TGAVTPPGFRFVVTSNGEVLKKLNPYLESGKVKPI  358 (392)
Q Consensus       299 ~vid~~G~-------~~~~~~~l~~~G~iv~~-g~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~l~~~  358 (392)
                      +++--...       ++.+.+.|+|||+++.. -+.    .+++.. ...+.+++.++++++..++..
T Consensus       144 ~i~~d~~~p~~~~~~L~~~~r~LKpGG~lvI~v~~~----~~d~~~-~~~~~~~~~~~~l~~aGF~~i  206 (226)
T PRK04266        144 VIYQDVAQPNQAEIAIDNAEFFLKDGGYLLLAIKAR----SIDVTK-DPKEIFKEEIRKLEEGGFEIL  206 (226)
T ss_pred             EEEECCCChhHHHHHHHHHHHhcCCCcEEEEEEecc----cccCcC-CHHHHHHHHHHHHHHcCCeEE
Confidence            99843321       46777899999999873 111    011111 112444556677776555543

>PRK07024 short chain dehydrogenase; Provisional

Probab=94.60  E-value=0.16  Score=46.64  Aligned_cols=41  Identities=17%  Similarity=0.242  Sum_probs=33.8

Q ss_pred             CCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHH
Q 016265          233 GKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFL  274 (392)
Q Consensus       233 g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~  274 (392)
                      +.+|+|+||+|++|...+..... .|+++++++++.++++.+
T Consensus         2 ~~~vlItGas~gIG~~la~~l~~-~G~~v~~~~r~~~~~~~~   42 (257)
T PRK07024          2 PLKVFITGASSGIGQALAREYAR-QGATLGLVARRTDALQAF   42 (257)
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHH
Confidence            46899999999999998877766 499999999887776544

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=94.60  E-value=0.33  Score=45.13  Aligned_cols=100  Identities=16%  Similarity=0.311  Sum_probs=65.5

Q ss_pred             HHHHHhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCC-cEEEeCCCCcccc--C-CCCc
Q 016265          222 YEGLERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGA-DLAIDYTKDNFED--L-PEKF  297 (392)
Q Consensus       222 ~~al~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~-~~vi~~~~~~~~~--~-~~~~  297 (392)
                      -..+...++.++.+||=+| +| .|..+..+++. ++++++.++.++.-.+.+++... ...+.....++.+  . .+.|
T Consensus        42 ~~~l~~l~l~~~~~VLDiG-cG-~G~~a~~la~~-~~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~~~~~~~~~F  118 (263)
T PTZ00098         42 TKILSDIELNENSKVLDIG-SG-LGGGCKYINEK-YGAHVHGVDICEKMVNIAKLRNSDKNKIEFEANDILKKDFPENTF  118 (263)
T ss_pred             HHHHHhCCCCCCCEEEEEc-CC-CChhhHHHHhh-cCCEEEEEECCHHHHHHHHHHcCcCCceEEEECCcccCCCCCCCe
Confidence            3345677889999999997 54 46677778876 58899999999888777765321 1111111111111  1 2469


Q ss_pred             cEEEec--C---c------cHHHHHHhcccCCeEEEEc
Q 016265          298 DVVYDA--I---G------QCDRAVKAIKEGGTVVALT  324 (392)
Q Consensus       298 D~vid~--~---G------~~~~~~~~l~~~G~iv~~g  324 (392)
                      |+|+..  .   +      .+..+.+.|+|||+++...
T Consensus       119 D~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d  156 (263)
T PTZ00098        119 DMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITD  156 (263)
T ss_pred             EEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence            999862  1   1      1467789999999998764

>PRK06181 short chain dehydrogenase; Provisional

Probab=94.60  E-value=0.12  Score=47.66  Aligned_cols=39  Identities=26%  Similarity=0.390  Sum_probs=32.3

Q ss_pred             CCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHH
Q 016265          233 GKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLE  272 (392)
Q Consensus       233 g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~  272 (392)
                      +.+|||+||+|++|...++.+.. .|++|+++++++.+.+
T Consensus         1 ~~~vlVtGasg~iG~~la~~l~~-~g~~Vi~~~r~~~~~~   39 (263)
T PRK06181          1 GKVVIITGASEGIGRALAVRLAR-AGAQLVLAARNETRLA   39 (263)
T ss_pred             CCEEEEecCCcHHHHHHHHHHHH-CCCEEEEEeCCHHHHH
Confidence            35799999999999998887766 5999999988766544

>KOG0725 consensus Reductases with broad range of substrate specificities [General function prediction only]

Probab=94.59  E-value=0.096  Score=48.95  Aligned_cols=43  Identities=37%  Similarity=0.433  Sum_probs=35.2

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHH
Q 016265          231 SAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFL  274 (392)
Q Consensus       231 ~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~  274 (392)
                      -.|..++|+|++.++|.+.+..... .|++|+++.+++++++..
T Consensus         6 l~gkvalVTG~s~GIG~aia~~la~-~Ga~v~i~~r~~~~~~~~   48 (270)
T KOG0725|consen    6 LAGKVALVTGGSSGIGKAIALLLAK-AGAKVVITGRSEERLEET   48 (270)
T ss_pred             CCCcEEEEECCCChHHHHHHHHHHH-CCCEEEEEeCCHHHHHHH
Confidence            3688999999999999887665555 499999999988886554

>PLN02490 MPBQ/MSBQ methyltransferase

Probab=94.58  E-value=0.22  Score=48.01  Aligned_cols=98  Identities=18%  Similarity=0.181  Sum_probs=61.6

Q ss_pred             HHhcCC-CCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCCccccC---CCCccEE
Q 016265          225 LERTGF-SAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFEDL---PEKFDVV  300 (392)
Q Consensus       225 l~~~~~-~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~~~---~~~~D~v  300 (392)
                      ++...+ .++.+||=+| +|. |..+..+++...+.+++.++.+++-++.+++.....-+.....+..+.   .+.||+|
T Consensus       105 l~~~~l~~~~~~VLDLG-cGt-G~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~lp~~~~sFDvV  182 (340)
T PLN02490        105 LEPADLSDRNLKVVDVG-GGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDLPFPTDYADRY  182 (340)
T ss_pred             HhhcccCCCCCEEEEEe-cCC-cHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhccCCeEEeccHHhCCCCCCceeEE
Confidence            344443 4678999997 555 777788887743467888888888777776532111011111122221   3469998


Q ss_pred             EecCc---------cHHHHHHhcccCCeEEEEc
Q 016265          301 YDAIG---------QCDRAVKAIKEGGTVVALT  324 (392)
Q Consensus       301 id~~G---------~~~~~~~~l~~~G~iv~~g  324 (392)
                      +.+..         .++++.+.|++||+++..+
T Consensus       183 Is~~~L~~~~d~~~~L~e~~rvLkPGG~LvIi~  215 (340)
T PLN02490        183 VSAGSIEYWPDPQRGIKEAYRVLKIGGKACLIG  215 (340)
T ss_pred             EEcChhhhCCCHHHHHHHHHHhcCCCcEEEEEE
Confidence            86532         2478899999999988764

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=94.57  E-value=0.34  Score=42.87  Aligned_cols=92  Identities=15%  Similarity=0.179  Sum_probs=58.8

Q ss_pred             hcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHh----cCCcEEEeCCCCccc--cCCCCccEE
Q 016265          227 RTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKS----LGADLAIDYTKDNFE--DLPEKFDVV  300 (392)
Q Consensus       227 ~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~----~G~~~vi~~~~~~~~--~~~~~~D~v  300 (392)
                      .....++.+||-+| + |.|..+..+|+.  |.++++++.++.-++.+++    .+... ++....++.  ...+.||+|
T Consensus        25 ~l~~~~~~~vLDiG-c-G~G~~a~~La~~--g~~V~gvD~S~~~i~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~~fD~I   99 (197)
T PRK11207         25 AVKVVKPGKTLDLG-C-GNGRNSLYLAAN--GFDVTAWDKNPMSIANLERIKAAENLDN-LHTAVVDLNNLTFDGEYDFI   99 (197)
T ss_pred             hcccCCCCcEEEEC-C-CCCHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHHcCCCc-ceEEecChhhCCcCCCcCEE
Confidence            34456678999997 4 448889999974  8899999998876665543    23221 111111111  123569999


Q ss_pred             EecCc-----------cHHHHHHhcccCCeEEEE
Q 016265          301 YDAIG-----------QCDRAVKAIKEGGTVVAL  323 (392)
Q Consensus       301 id~~G-----------~~~~~~~~l~~~G~iv~~  323 (392)
                      +....           .+..+.++|++||.++.+
T Consensus       100 ~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~  133 (197)
T PRK11207        100 LSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIV  133 (197)
T ss_pred             EEecchhhCCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence            97632           135777889999996544

>PRK06114 short chain dehydrogenase; Provisional

Probab=94.57  E-value=0.19  Score=46.08  Aligned_cols=37  Identities=22%  Similarity=0.226  Sum_probs=31.3

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcc
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTR  269 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~  269 (392)
                      .|.+++|+||+|++|...++.+.. .|+++++++++++
T Consensus         7 ~~k~~lVtG~s~gIG~~ia~~l~~-~G~~v~~~~r~~~   43 (254)
T PRK06114          7 DGQVAFVTGAGSGIGQRIAIGLAQ-AGADVALFDLRTD   43 (254)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHH-CCCEEEEEeCCcc
Confidence            477999999999999998887776 5999999887543

>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional

Probab=94.55  E-value=0.16  Score=46.65  Aligned_cols=45  Identities=24%  Similarity=0.265  Sum_probs=32.8

Q ss_pred             CCCeEEEEcCC--CcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhc
Q 016265          232 AGKSILVLNGS--GGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSL  277 (392)
Q Consensus       232 ~g~~VlI~Ga~--G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~  277 (392)
                      .|++++|+||+  +++|.+.++.... .|++|+++.++++..+.++++
T Consensus         6 ~~k~~lItGas~~~gIG~a~a~~la~-~G~~Vi~~~r~~~~~~~~~~~   52 (252)
T PRK06079          6 SGKKIVVMGVANKRSIAWGCAQAIKD-QGATVIYTYQNDRMKKSLQKL   52 (252)
T ss_pred             CCCEEEEeCCCCCCchHHHHHHHHHH-CCCEEEEecCchHHHHHHHhh
Confidence            57899999988  7999997776655 499999887764333334443

>PRK06914 short chain dehydrogenase; Provisional

Probab=94.55  E-value=0.14  Score=47.63  Aligned_cols=41  Identities=24%  Similarity=0.208  Sum_probs=33.6

Q ss_pred             CCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHH
Q 016265          233 GKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFL  274 (392)
Q Consensus       233 g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~  274 (392)
                      +.++||+||+|++|...+..+.. .|++|+++++++++.+.+
T Consensus         3 ~k~~lItGasg~iG~~la~~l~~-~G~~V~~~~r~~~~~~~~   43 (280)
T PRK06914          3 KKIAIVTGASSGFGLLTTLELAK-KGYLVIATMRNPEKQENL   43 (280)
T ss_pred             CCEEEEECCCchHHHHHHHHHHh-CCCEEEEEeCCHHHHHHH
Confidence            57899999999999998887766 499999988877665443

>PRK08410 2-hydroxyacid dehydrogenase; Provisional

Probab=94.54  E-value=0.089  Score=50.24  Aligned_cols=101  Identities=21%  Similarity=0.280  Sum_probs=68.8

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCCccccCCCCccEEEecCc------
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFEDLPEKFDVVYDAIG------  305 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~~~~~~~D~vid~~G------  305 (392)
                      .|.+|.|+| .|.+|...+++++. +|++|++.++.....    ..+.      ...++.++-...|+|+-++.      
T Consensus       144 ~gktvGIiG-~G~IG~~vA~~~~~-fgm~V~~~d~~~~~~----~~~~------~~~~l~ell~~sDvv~lh~Plt~~T~  211 (311)
T PRK08410        144 KGKKWGIIG-LGTIGKRVAKIAQA-FGAKVVYYSTSGKNK----NEEY------ERVSLEELLKTSDIISIHAPLNEKTK  211 (311)
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHhh-cCCEEEEECCCcccc----ccCc------eeecHHHHhhcCCEEEEeCCCCchhh
Confidence            588999998 99999999999998 799999888753211    1111      11234555567798887754      


Q ss_pred             c-H-HHHHHhcccCCeEEEEcCCCCCCceEEEEeecHHHHHHHHHHHHCCCcc
Q 016265          306 Q-C-DRAVKAIKEGGTVVALTGAVTPPGFRFVVTSNGEVLKKLNPYLESGKVK  356 (392)
Q Consensus       306 ~-~-~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~l~  356 (392)
                      . + ...++.|+++..+|.++-...         .   +-+.+.+.+++|++.
T Consensus       212 ~li~~~~~~~Mk~~a~lIN~aRG~v---------V---De~AL~~AL~~g~i~  252 (311)
T PRK08410        212 NLIAYKELKLLKDGAILINVGRGGI---------V---NEKDLAKALDEKDIY  252 (311)
T ss_pred             cccCHHHHHhCCCCeEEEECCCccc---------c---CHHHHHHHHHcCCeE
Confidence            1 2 688889999999887753220         0   124556667777765

>PLN02253 xanthoxin dehydrogenase

Probab=94.54  E-value=0.15  Score=47.51  Aligned_cols=40  Identities=25%  Similarity=0.370  Sum_probs=32.0

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHH
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLE  272 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~  272 (392)
                      .|.+++|+||+|++|.+.++.... .|++|+++++++++.+
T Consensus        17 ~~k~~lItGas~gIG~~la~~l~~-~G~~v~~~~~~~~~~~   56 (280)
T PLN02253         17 LGKVALVTGGATGIGESIVRLFHK-HGAKVCIVDLQDDLGQ   56 (280)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHH-cCCEEEEEeCCHHHHH
Confidence            478999999999999987776655 4999998887665543

>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional

Probab=94.54  E-value=0.16  Score=46.60  Aligned_cols=40  Identities=13%  Similarity=0.176  Sum_probs=32.6

Q ss_pred             CCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHH
Q 016265          233 GKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEF  273 (392)
Q Consensus       233 g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~  273 (392)
                      +++|||+||+|++|...+..... .|+++++++++..+.+.
T Consensus         2 ~k~ilItG~~~~IG~~la~~l~~-~g~~vi~~~r~~~~~~~   41 (259)
T PRK12384          2 NQVAVVIGGGQTLGAFLCHGLAE-EGYRVAVADINSEKAAN   41 (259)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHH-CCCEEEEEECCHHHHHH
Confidence            56899999999999998877766 59999999887665543

>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional

Probab=94.53  E-value=0.17  Score=47.21  Aligned_cols=74  Identities=28%  Similarity=0.299  Sum_probs=44.4

Q ss_pred             CCCCeEEEEcCC--CcHHHHHHHHHHHhcCCeEEEEeCCc---ccHHHH-HhcCCcEEE--eCCCC-cccc-------CC
Q 016265          231 SAGKSILVLNGS--GGVGSLVIQLAKQVFGASRVAATSST---RNLEFL-KSLGADLAI--DYTKD-NFED-------LP  294 (392)
Q Consensus       231 ~~g~~VlI~Ga~--G~vG~~aiqlak~~~G~~vv~~~~~~---~~~~~~-~~~G~~~vi--~~~~~-~~~~-------~~  294 (392)
                      -.|+++||+||+  +++|.+.++.... .|++++++.+++   ++++.+ +++|....+  |..+. ...+       .-
T Consensus         8 ~~~k~~lItGas~~~GIG~aia~~la~-~G~~V~l~~r~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~   86 (272)
T PRK08159          8 MAGKRGLILGVANNRSIAWGIAKACRA-AGAELAFTYQGDALKKRVEPLAAELGAFVAGHCDVTDEASIDAVFETLEKKW   86 (272)
T ss_pred             ccCCEEEEECCCCCCcHHHHHHHHHHH-CCCEEEEEcCchHHHHHHHHHHHhcCCceEEecCCCCHHHHHHHHHHHHHhc
Confidence            357899999986  7999997766655 499988776553   233333 344532223  22221 1111       12


Q ss_pred             CCccEEEecCc
Q 016265          295 EKFDVVYDAIG  305 (392)
Q Consensus       295 ~~~D~vid~~G  305 (392)
                      +.+|++|++.|
T Consensus        87 g~iD~lv~nAG   97 (272)
T PRK08159         87 GKLDFVVHAIG   97 (272)
T ss_pred             CCCcEEEECCc
Confidence            46899998865

>PRK05884 short chain dehydrogenase; Provisional

Probab=94.53  E-value=0.14  Score=46.17  Aligned_cols=70  Identities=21%  Similarity=0.313  Sum_probs=45.7

Q ss_pred             eEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHH-HhcCCcEE-EeCCCCc-cc----cCCCCccEEEecCc
Q 016265          235 SILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFL-KSLGADLA-IDYTKDN-FE----DLPEKFDVVYDAIG  305 (392)
Q Consensus       235 ~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~-~~~G~~~v-i~~~~~~-~~----~~~~~~D~vid~~G  305 (392)
                      +++|+||+|++|...++.... .|++++++.++.++++.+ ++++...+ .|..+.. +.    +..+.+|++|++.|
T Consensus         2 ~vlItGas~giG~~ia~~l~~-~g~~v~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~id~lv~~ag   78 (223)
T PRK05884          2 EVLVTGGDTDLGRTIAEGFRN-DGHKVTLVGARRDDLEVAAKELDVDAIVCDNTDPASLEEARGLFPHHLDTIVNVPA   78 (223)
T ss_pred             eEEEEeCCchHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHhccCcEEecCCCCHHHHHHHHHHHhhcCcEEEECCC
Confidence            589999999999998887766 499999998887776554 34443322 2333221 11    12235788887743

>PRK08085 gluconate 5-dehydrogenase; Provisional

Probab=94.52  E-value=0.18  Score=46.17  Aligned_cols=73  Identities=25%  Similarity=0.374  Sum_probs=47.6

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHH----HhcCCcE-EE--eCCCCc-ccc-------CCCC
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFL----KSLGADL-AI--DYTKDN-FED-------LPEK  296 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~----~~~G~~~-vi--~~~~~~-~~~-------~~~~  296 (392)
                      .+.++||+||+|++|...++.... .|++++++.+++++++.+    +..+... .+  |..+.+ +.+       ...+
T Consensus         8 ~~k~~lItGas~giG~~ia~~L~~-~G~~vvl~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~   86 (254)
T PRK08085          8 AGKNILITGSAQGIGFLLATGLAE-YGAEIIINDITAERAELAVAKLRQEGIKAHAAPFNVTHKQEVEAAIEHIEKDIGP   86 (254)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHH-cCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEecCCCCHHHHHHHHHHHHHhcCC
Confidence            477999999999999998877766 499999988877665433    2223221 22  222211 111       1246


Q ss_pred             ccEEEecCc
Q 016265          297 FDVVYDAIG  305 (392)
Q Consensus       297 ~D~vid~~G  305 (392)
                      +|+++.+.|
T Consensus        87 id~vi~~ag   95 (254)
T PRK08085         87 IDVLINNAG   95 (254)
T ss_pred             CCEEEECCC
Confidence            899999876

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=94.52  E-value=0.34  Score=43.86  Aligned_cols=97  Identities=24%  Similarity=0.232  Sum_probs=62.2

Q ss_pred             HhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhc-CCeEEEEeCCcccHHHHHh----cCCcE--EEeCCCCccccCCCCcc
Q 016265          226 ERTGFSAGKSILVLNGSGGVGSLVIQLAKQVF-GASRVAATSSTRNLEFLKS----LGADL--AIDYTKDNFEDLPEKFD  298 (392)
Q Consensus       226 ~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~-G~~vv~~~~~~~~~~~~~~----~G~~~--vi~~~~~~~~~~~~~~D  298 (392)
                      ....+++|++||=+|  .|.|..+..+++... +.+++.++.+++..+.+++    .+.+.  ++..+...+....+.+|
T Consensus        39 ~~l~~~~~~~vLDiG--cG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD  116 (231)
T TIGR02752        39 KRMNVQAGTSALDVC--CGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFDDNSFD  116 (231)
T ss_pred             HhcCCCCCCEEEEeC--CCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCCCCCcc
Confidence            456778899999987  345777788887631 3588899988887766643    23222  22222212111235799


Q ss_pred             EEEecCc---------cHHHHHHhcccCCeEEEEc
Q 016265          299 VVYDAIG---------QCDRAVKAIKEGGTVVALT  324 (392)
Q Consensus       299 ~vid~~G---------~~~~~~~~l~~~G~iv~~g  324 (392)
                      +|+-+..         .+..+.+.|++||+++...
T Consensus       117 ~V~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~  151 (231)
T TIGR02752       117 YVTIGFGLRNVPDYMQVLREMYRVVKPGGKVVCLE  151 (231)
T ss_pred             EEEEecccccCCCHHHHHHHHHHHcCcCeEEEEEE
Confidence            9985432         1467888999999998764

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>TIGR00477 tehB tellurite resistance protein TehB

Probab=94.50  E-value=0.29  Score=43.26  Aligned_cols=92  Identities=17%  Similarity=0.145  Sum_probs=57.0

Q ss_pred             cCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHh----cCCcEEEeCCCCccccCCCCccEEEec
Q 016265          228 TGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKS----LGADLAIDYTKDNFEDLPEKFDVVYDA  303 (392)
Q Consensus       228 ~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~----~G~~~vi~~~~~~~~~~~~~~D~vid~  303 (392)
                      ....++.+||-.|  .|.|..+..+++.  |.+|++++.++.-++.+++    .|........+.........+|+|+..
T Consensus        26 ~~~~~~~~vLDiG--cG~G~~a~~la~~--g~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~fD~I~~~  101 (195)
T TIGR00477        26 VKTVAPCKTLDLG--CGQGRNSLYLSLA--GYDVRAWDHNPASIASVLDMKARENLPLRTDAYDINAAALNEDYDFIFST  101 (195)
T ss_pred             hccCCCCcEEEeC--CCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhccccCCCCEEEEe
Confidence            3444567888887  4668889989873  8899999998876665532    333211111110001123469999865


Q ss_pred             Cc-----------cHHHHHHhcccCCeEEEE
Q 016265          304 IG-----------QCDRAVKAIKEGGTVVAL  323 (392)
Q Consensus       304 ~G-----------~~~~~~~~l~~~G~iv~~  323 (392)
                      .-           .+..+.++|+|||.++.+
T Consensus       102 ~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~  132 (195)
T TIGR00477       102 VVFMFLQAGRVPEIIANMQAHTRPGGYNLIV  132 (195)
T ss_pred             cccccCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence            21           136778889999996555

Part of a tellurite-reducing operon tehA and tehB

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=94.46  E-value=0.32  Score=43.91  Aligned_cols=90  Identities=20%  Similarity=0.189  Sum_probs=58.9

Q ss_pred             CCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHH-HhcCCcEE--------------EeCCCCcccc-
Q 016265          229 GFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFL-KSLGADLA--------------IDYTKDNFED-  292 (392)
Q Consensus       229 ~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~-~~~G~~~v--------------i~~~~~~~~~-  292 (392)
                      .+.++.+||+.|  .|.|.-++.||.  .|.+|+.++.++.-.+.+ ++.|....              ++....++.+ 
T Consensus        34 ~~~~~~rvL~~g--CG~G~da~~LA~--~G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l  109 (218)
T PRK13255         34 ALPAGSRVLVPL--CGKSLDMLWLAE--QGHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFAL  109 (218)
T ss_pred             CCCCCCeEEEeC--CCChHhHHHHHh--CCCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCC
Confidence            456778999996  567999999996  499999999998877754 33332210              0000011111 


Q ss_pred             ---CCCCccEEEecCc--c---------HHHHHHhcccCCeEEE
Q 016265          293 ---LPEKFDVVYDAIG--Q---------CDRAVKAIKEGGTVVA  322 (392)
Q Consensus       293 ---~~~~~D~vid~~G--~---------~~~~~~~l~~~G~iv~  322 (392)
                         ....||.|+|..-  .         +..+.++|+|||+++.
T Consensus       110 ~~~~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l  153 (218)
T PRK13255        110 TAADLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLL  153 (218)
T ss_pred             CcccCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEE
Confidence               1236899999753  1         4678889999997544

>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=94.44  E-value=0.17  Score=46.52  Aligned_cols=73  Identities=16%  Similarity=0.282  Sum_probs=46.5

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcc-c-HHHHHhcCCcE-E--EeCCCCc-ccc-------CCCCcc
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTR-N-LEFLKSLGADL-A--IDYTKDN-FED-------LPEKFD  298 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~-~-~~~~~~~G~~~-v--i~~~~~~-~~~-------~~~~~D  298 (392)
                      .|++++|+||++++|.+.++.+.. .|++++++.++.. + .+.+++.|.+. .  .|..+.. +.+       ..+++|
T Consensus         7 ~~k~~lItGas~gIG~aia~~l~~-~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~iD   85 (251)
T PRK12481          7 NGKVAIITGCNTGLGQGMAIGLAK-AGADIVGVGVAEAPETQAQVEALGRKFHFITADLIQQKDIDSIVSQAVEVMGHID   85 (251)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHH-CCCEEEEecCchHHHHHHHHHHcCCeEEEEEeCCCCHHHHHHHHHHHHHHcCCCC
Confidence            478999999999999998887666 5999888766432 1 23334455332 1  2332221 111       124689


Q ss_pred             EEEecCc
Q 016265          299 VVYDAIG  305 (392)
Q Consensus       299 ~vid~~G  305 (392)
                      +++++.|
T Consensus        86 ~lv~~ag   92 (251)
T PRK12481         86 ILINNAG   92 (251)
T ss_pred             EEEECCC
Confidence            9998876

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=94.43  E-value=0.12  Score=48.60  Aligned_cols=71  Identities=17%  Similarity=0.162  Sum_probs=46.5

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHHHHhcCC-eEEEEeCCcccHHHH-HhcC----CcEEEeCCCCccccCCCCccEEEecC
Q 016265          231 SAGKSILVLNGSGGVGSLVIQLAKQVFGA-SRVAATSSTRNLEFL-KSLG----ADLAIDYTKDNFEDLPEKFDVVYDAI  304 (392)
Q Consensus       231 ~~g~~VlI~Ga~G~vG~~aiqlak~~~G~-~vv~~~~~~~~~~~~-~~~G----~~~vi~~~~~~~~~~~~~~D~vid~~  304 (392)
                      ..+.+|+|+| +|++|.+++..+... |+ +++++.++.+|.+.+ ++++    ...+....  +..+....+|+||+|+
T Consensus       125 ~~~k~vlIlG-aGGaaraia~aL~~~-G~~~I~I~nR~~~ka~~la~~l~~~~~~~~~~~~~--~~~~~~~~aDiVInaT  200 (284)
T PRK12549        125 ASLERVVQLG-AGGAGAAVAHALLTL-GVERLTIFDVDPARAAALADELNARFPAARATAGS--DLAAALAAADGLVHAT  200 (284)
T ss_pred             ccCCEEEEEC-CcHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHHHHHHhhCCCeEEEecc--chHhhhCCCCEEEECC
Confidence            3567899998 899999998888774 87 677777887776554 3332    11222211  1222335689999996


Q ss_pred             c
Q 016265          305 G  305 (392)
Q Consensus       305 G  305 (392)
                      .
T Consensus       201 p  201 (284)
T PRK12549        201 P  201 (284)
T ss_pred             c
Confidence            3

>TIGR01777 yfcH conserved hypothetical protein TIGR01777

Probab=94.43  E-value=0.045  Score=51.12  Aligned_cols=66  Identities=23%  Similarity=0.157  Sum_probs=44.0

Q ss_pred             EEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCCccccCCCCccEEEecCc
Q 016265          236 ILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFEDLPEKFDVVYDAIG  305 (392)
Q Consensus       236 VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~~~~~~~D~vid~~G  305 (392)
                      |||+||+|.+|...++.+.. .|.+|++++++..+.......+   +.+.......+...++|+||.+.+
T Consensus         1 vlVtGatG~iG~~l~~~L~~-~g~~V~~~~r~~~~~~~~~~~~---~~~~~~~~~~~~~~~~D~Vvh~a~   66 (292)
T TIGR01777         1 ILITGGTGFIGRALTQRLTK-DGHEVTILTRSPPAGANTKWEG---YKPWAPLAESEALEGADAVINLAG   66 (292)
T ss_pred             CEEEcccchhhHHHHHHHHH-cCCEEEEEeCCCCCCCccccee---eecccccchhhhcCCCCEEEECCC
Confidence            68999999999999987766 4999999998766543322121   111111222233457999999876

This model represents a clade of proteins of unknown function including the E. coli yfcH protein.

>PRK08251 short chain dehydrogenase; Provisional

Probab=94.43  E-value=0.19  Score=45.71  Aligned_cols=41  Identities=24%  Similarity=0.270  Sum_probs=32.6

Q ss_pred             CCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHH
Q 016265          233 GKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFL  274 (392)
Q Consensus       233 g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~  274 (392)
                      +.+++|+||+|++|...+..... .|++++++++++++.+.+
T Consensus         2 ~k~vlItGas~giG~~la~~l~~-~g~~v~~~~r~~~~~~~~   42 (248)
T PRK08251          2 RQKILITGASSGLGAGMAREFAA-KGRDLALCARRTDRLEEL   42 (248)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHH-cCCEEEEEeCCHHHHHHH
Confidence            56899999999999987766555 489999998887766544

>PRK08267 short chain dehydrogenase; Provisional

Probab=94.42  E-value=0.17  Score=46.49  Aligned_cols=71  Identities=25%  Similarity=0.400  Sum_probs=47.8

Q ss_pred             CeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHh-cC-Cc-E--EEeCCCCc-ccc----C----CCCccE
Q 016265          234 KSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKS-LG-AD-L--AIDYTKDN-FED----L----PEKFDV  299 (392)
Q Consensus       234 ~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~-~G-~~-~--vi~~~~~~-~~~----~----~~~~D~  299 (392)
                      .++||+||+|++|...++.+.. .|++|++++++.++++.+.+ ++ .. +  ..|..+.. +.+    .    .+++|+
T Consensus         2 k~vlItGasg~iG~~la~~l~~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~~id~   80 (260)
T PRK08267          2 KSIFITGAASGIGRATALLFAA-EGWRVGAYDINEAGLAALAAELGAGNAWTGALDVTDRAAWDAALADFAAATGGRLDV   80 (260)
T ss_pred             cEEEEeCCCchHHHHHHHHHHH-CCCeEEEEeCCHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHcCCCCCE
Confidence            4799999999999998887666 49999999988877665543 32 11 1  22433321 111    1    346899


Q ss_pred             EEecCc
Q 016265          300 VYDAIG  305 (392)
Q Consensus       300 vid~~G  305 (392)
                      +|.+.|
T Consensus        81 vi~~ag   86 (260)
T PRK08267         81 LFNNAG   86 (260)
T ss_pred             EEECCC
Confidence            999887

>PRK08655 prephenate dehydrogenase; Provisional

Probab=94.41  E-value=0.2  Score=50.19  Aligned_cols=84  Identities=23%  Similarity=0.391  Sum_probs=54.0

Q ss_pred             eEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccH-HHHHhcCCcEEEeCCCCccccCCCCccEEEecCc--c----H
Q 016265          235 SILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNL-EFLKSLGADLAIDYTKDNFEDLPEKFDVVYDAIG--Q----C  307 (392)
Q Consensus       235 ~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~-~~~~~~G~~~vi~~~~~~~~~~~~~~D~vid~~G--~----~  307 (392)
                      +|+|+||.|.+|.+.+..++. .|.++++.++++++. +.+.++|+...     .+..+....+|+||-|+.  .    +
T Consensus         2 kI~IIGG~G~mG~slA~~L~~-~G~~V~v~~r~~~~~~~~a~~~gv~~~-----~~~~e~~~~aDvVIlavp~~~~~~vl   75 (437)
T PRK08655          2 KISIIGGTGGLGKWFARFLKE-KGFEVIVTGRDPKKGKEVAKELGVEYA-----NDNIDAAKDADIVIISVPINVTEDVI   75 (437)
T ss_pred             EEEEEecCCHHHHHHHHHHHH-CCCEEEEEECChHHHHHHHHHcCCeec-----cCHHHHhccCCEEEEecCHHHHHHHH
Confidence            689998889999998888887 588888888877664 55667775311     112222345677777765  1    2


Q ss_pred             HHHHHhcccCCeEEEEc
Q 016265          308 DRAVKAIKEGGTVVALT  324 (392)
Q Consensus       308 ~~~~~~l~~~G~iv~~g  324 (392)
                      ......++++..++.++
T Consensus        76 ~~l~~~l~~~~iViDvs   92 (437)
T PRK08655         76 KEVAPHVKEGSLLMDVT   92 (437)
T ss_pred             HHHHhhCCCCCEEEEcc
Confidence            33333445555555554

>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]

Probab=94.41  E-value=0.17  Score=48.54  Aligned_cols=104  Identities=18%  Similarity=0.225  Sum_probs=66.8

Q ss_pred             CCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCCccccCCCCccEEEecCc------c
Q 016265          233 GKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFEDLPEKFDVVYDAIG------Q  306 (392)
Q Consensus       233 g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~~~~~~~D~vid~~G------~  306 (392)
                      |.+|.|+| .|.+|...++.++. +|.++++.+....+. .....+..     ...++.++-...|++.-.+.      .
T Consensus       142 gkTvGIiG-~G~IG~~va~~l~a-fgm~v~~~d~~~~~~-~~~~~~~~-----~~~~Ld~lL~~sDiv~lh~PlT~eT~g  213 (324)
T COG0111         142 GKTVGIIG-LGRIGRAVAKRLKA-FGMKVIGYDPYSPRE-RAGVDGVV-----GVDSLDELLAEADILTLHLPLTPETRG  213 (324)
T ss_pred             CCEEEEEC-CCHHHHHHHHHHHh-CCCeEEEECCCCchh-hhccccce-----ecccHHHHHhhCCEEEEcCCCCcchhc
Confidence            78999998 99999999999998 699999999822221 11111111     01223444456788776654      1


Q ss_pred             -H-HHHHHhcccCCeEEEEcCCCCCCceEEEEeecHHHHHHHHHHHHCCCcc
Q 016265          307 -C-DRAVKAIKEGGTVVALTGAVTPPGFRFVVTSNGEVLKKLNPYLESGKVK  356 (392)
Q Consensus       307 -~-~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~l~  356 (392)
                       + ...+..|++|..+|.++-..            --+-+.+++.+++|++.
T Consensus       214 ~i~~~~~a~MK~gailIN~aRG~------------vVde~aL~~AL~~G~i~  253 (324)
T COG0111         214 LINAEELAKMKPGAILINAARGG------------VVDEDALLAALDSGKIA  253 (324)
T ss_pred             ccCHHHHhhCCCCeEEEECCCcc------------eecHHHHHHHHHcCCcc
Confidence             2 57788888888776654211            01235667777888776

>PRK08263 short chain dehydrogenase; Provisional

Probab=94.41  E-value=0.19  Score=46.70  Aligned_cols=72  Identities=25%  Similarity=0.287  Sum_probs=47.4

Q ss_pred             CCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHh-cCCc-EEE--eCCCC-cccc-------CCCCccEE
Q 016265          233 GKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKS-LGAD-LAI--DYTKD-NFED-------LPEKFDVV  300 (392)
Q Consensus       233 g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~-~G~~-~vi--~~~~~-~~~~-------~~~~~D~v  300 (392)
                      +.+|+|+||+|++|...++.+.. .|.+|++++++.++++.+.+ ++.. ..+  |..+. .+.+       ...++|++
T Consensus         3 ~k~vlItGasg~iG~~~a~~l~~-~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~v   81 (275)
T PRK08263          3 EKVWFITGASRGFGRAWTEAALE-RGDRVVATARDTATLADLAEKYGDRLLPLALDVTDRAAVFAAVETAVEHFGRLDIV   81 (275)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHH-CCCEEEEEECCHHHHHHHHHhccCCeeEEEccCCCHHHHHHHHHHHHHHcCCCCEE
Confidence            46899999999999998877666 49999988888777655543 2321 122  22221 1111       12468999


Q ss_pred             EecCc
Q 016265          301 YDAIG  305 (392)
Q Consensus       301 id~~G  305 (392)
                      |.+.|
T Consensus        82 i~~ag   86 (275)
T PRK08263         82 VNNAG   86 (275)
T ss_pred             EECCC
Confidence            99987

>PRK06172 short chain dehydrogenase; Provisional

Probab=94.40  E-value=0.19  Score=45.99  Aligned_cols=73  Identities=26%  Similarity=0.386  Sum_probs=47.1

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHH----HhcCCc-EEE--eCCCCc-ccc-------CCCC
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFL----KSLGAD-LAI--DYTKDN-FED-------LPEK  296 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~----~~~G~~-~vi--~~~~~~-~~~-------~~~~  296 (392)
                      .+.+++|+||+|++|...+..+.. .|++++++.+++++.+.+    ++.+.. ..+  |..+.. ..+       ...+
T Consensus         6 ~~k~ilItGas~~iG~~ia~~l~~-~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~g~   84 (253)
T PRK06172          6 SGKVALVTGGAAGIGRATALAFAR-EGAKVVVADRDAAGGEETVALIREAGGEALFVACDVTRDAEVKALVEQTIAAYGR   84 (253)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHH-cCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHhCC
Confidence            478999999999999998776656 499999998877664433    333432 122  222211 111       1236


Q ss_pred             ccEEEecCc
Q 016265          297 FDVVYDAIG  305 (392)
Q Consensus       297 ~D~vid~~G  305 (392)
                      +|++|.+.|
T Consensus        85 id~li~~ag   93 (253)
T PRK06172         85 LDYAFNNAG   93 (253)
T ss_pred             CCEEEECCC
Confidence            799998876

>PRK08618 ornithine cyclodeaminase; Validated

Probab=94.40  E-value=0.39  Score=46.12  Aligned_cols=95  Identities=12%  Similarity=0.159  Sum_probs=59.8

Q ss_pred             cCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEE-EEeCCcccHHHH-Hh----cCCcEEEeCCCCccccCCCCccEEE
Q 016265          228 TGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRV-AATSSTRNLEFL-KS----LGADLAIDYTKDNFEDLPEKFDVVY  301 (392)
Q Consensus       228 ~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv-~~~~~~~~~~~~-~~----~G~~~vi~~~~~~~~~~~~~~D~vi  301 (392)
                      ...+...+++|+| +|+.|...+.......+.+.+ +..++++|.+.+ ++    ++.... .+  .+.++.....|+|+
T Consensus       122 la~~~~~~v~iiG-aG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~~~~~~-~~--~~~~~~~~~aDiVi  197 (325)
T PRK08618        122 LAREDAKTLCLIG-TGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKFNTEIY-VV--NSADEAIEEADIIV  197 (325)
T ss_pred             hcCCCCcEEEEEC-CcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCcEE-Ee--CCHHHHHhcCCEEE
Confidence            3334567899998 999998776554333476544 556677775543 32    343321 12  22333346789999


Q ss_pred             ecCcc--HHHHHHhcccCCeEEEEcCCC
Q 016265          302 DAIGQ--CDRAVKAIKEGGTVVALTGAV  327 (392)
Q Consensus       302 d~~G~--~~~~~~~l~~~G~iv~~g~~~  327 (392)
                      .|+++  .... +++++|-.+..+|...
T Consensus       198 ~aT~s~~p~i~-~~l~~G~hV~~iGs~~  224 (325)
T PRK08618        198 TVTNAKTPVFS-EKLKKGVHINAVGSFM  224 (325)
T ss_pred             EccCCCCcchH-HhcCCCcEEEecCCCC
Confidence            99874  2233 8889988888887653

>PRK09242 tropinone reductase; Provisional

Probab=94.39  E-value=0.2  Score=46.01  Aligned_cols=42  Identities=19%  Similarity=0.292  Sum_probs=34.6

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHH
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFL  274 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~  274 (392)
                      .|.+++|+||+|++|...+..+.. .|++++++.++.++.+.+
T Consensus         8 ~~k~~lItGa~~gIG~~~a~~l~~-~G~~v~~~~r~~~~~~~~   49 (257)
T PRK09242          8 DGQTALITGASKGIGLAIAREFLG-LGADVLIVARDADALAQA   49 (257)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHH-cCCEEEEEeCCHHHHHHH
Confidence            478999999999999998887766 499999998877665544

>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=94.39  E-value=0.47  Score=43.16  Aligned_cols=93  Identities=18%  Similarity=0.365  Sum_probs=55.7

Q ss_pred             CCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCC-cccH----HHHHhcCCc-EEE--eCCCCc-cc----c---CCCC
Q 016265          233 GKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSS-TRNL----EFLKSLGAD-LAI--DYTKDN-FE----D---LPEK  296 (392)
Q Consensus       233 g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~-~~~~----~~~~~~G~~-~vi--~~~~~~-~~----~---~~~~  296 (392)
                      +.++||+||+|++|...+.-... .|+++++..++ .++.    ..+++.|.. ..+  |..+.. ..    +   ...+
T Consensus         6 ~~~vlitGasg~iG~~l~~~l~~-~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   84 (252)
T PRK06077          6 DKVVVVTGSGRGIGRAIAVRLAK-EGSLVVVNAKKRAEEMNETLKMVKENGGEGIGVLADVSTREGCETLAKATIDRYGV   84 (252)
T ss_pred             CcEEEEeCCCChHHHHHHHHHHH-CCCEEEEEeCCChHHHHHHHHHHHHcCCeeEEEEeccCCHHHHHHHHHHHHHHcCC
Confidence            67999999999999987775555 49988776643 2222    222334432 122  322211 11    1   1246


Q ss_pred             ccEEEecCcc----------------------------HHHHHHhcccCCeEEEEcCC
Q 016265          297 FDVVYDAIGQ----------------------------CDRAVKAIKEGGTVVALTGA  326 (392)
Q Consensus       297 ~D~vid~~G~----------------------------~~~~~~~l~~~G~iv~~g~~  326 (392)
                      +|++|.+.|.                            .+.+.+.++..|+++.++..
T Consensus        85 ~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~sS~  142 (252)
T PRK06077         85 ADILVNNAGLGLFSPFLNVDDKLIDKHISTDFKSVIYCSQELAKEMREGGAIVNIASV  142 (252)
T ss_pred             CCEEEECCCCCCCCChhhCCHHHHHHHHhHhCHHHHHHHHHHHHHhhcCcEEEEEcch
Confidence            8999998761                            12345556678899888653

>PRK06953 short chain dehydrogenase; Provisional

Probab=94.38  E-value=0.17  Score=45.32  Aligned_cols=71  Identities=27%  Similarity=0.430  Sum_probs=48.0

Q ss_pred             CeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCc-EEEeCCCC-cccc----C-CCCccEEEecCc
Q 016265          234 KSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGAD-LAIDYTKD-NFED----L-PEKFDVVYDAIG  305 (392)
Q Consensus       234 ~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~-~vi~~~~~-~~~~----~-~~~~D~vid~~G  305 (392)
                      .+++|+|++|++|...++.+.. .|+++++++++.++.+.++..+.. ...|..+. .+..    . ..++|++|.+.|
T Consensus         2 ~~vlvtG~sg~iG~~la~~L~~-~G~~v~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~d~vi~~ag   79 (222)
T PRK06953          2 KTVLIVGASRGIGREFVRQYRA-DGWRVIATARDAAALAALQALGAEALALDVADPASVAGLAWKLDGEALDAAVYVAG   79 (222)
T ss_pred             ceEEEEcCCCchhHHHHHHHHh-CCCEEEEEECCHHHHHHHHhccceEEEecCCCHHHHHHHHHHhcCCCCCEEEECCC
Confidence            4799999999999988876655 499999998887777766665543 22233222 1111    1 235899998765

>PRK14027 quinate/shikimate dehydrogenase; Provisional

Probab=94.37  E-value=0.18  Score=47.43  Aligned_cols=73  Identities=22%  Similarity=0.252  Sum_probs=44.8

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHHHHhcCC-eEEEEeCCcccHHHHH-hc----CCcEEEeCCCCccccCCCCccEEEecC
Q 016265          231 SAGKSILVLNGSGGVGSLVIQLAKQVFGA-SRVAATSSTRNLEFLK-SL----GADLAIDYTKDNFEDLPEKFDVVYDAI  304 (392)
Q Consensus       231 ~~g~~VlI~Ga~G~vG~~aiqlak~~~G~-~vv~~~~~~~~~~~~~-~~----G~~~vi~~~~~~~~~~~~~~D~vid~~  304 (392)
                      ..+.+|+|+| +||.+.+++..+... |+ +++++.++.+|.+.+. ++    +...+......+..+....+|+|++|+
T Consensus       125 ~~~k~vlilG-aGGaarAi~~aL~~~-g~~~i~i~nR~~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~~~divINaT  202 (283)
T PRK14027        125 AKLDSVVQVG-AGGVGNAVAYALVTH-GVQKLQVADLDTSRAQALADVINNAVGREAVVGVDARGIEDVIAAADGVVNAT  202 (283)
T ss_pred             cCCCeEEEEC-CcHHHHHHHHHHHHC-CCCEEEEEcCCHHHHHHHHHHHhhccCcceEEecCHhHHHHHHhhcCEEEEcC
Confidence            3478999998 899999988776664 77 5567778777765543 33    221111111011122234689999997


Q ss_pred             c
Q 016265          305 G  305 (392)
Q Consensus       305 G  305 (392)
                      .
T Consensus       203 p  203 (283)
T PRK14027        203 P  203 (283)
T ss_pred             C
Confidence            5

>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.36  E-value=0.19  Score=47.10  Aligned_cols=95  Identities=22%  Similarity=0.249  Sum_probs=65.2

Q ss_pred             ccchhHHHHHHHHHhcCCC-CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCCccc
Q 016265          213 GLPLAIETAYEGLERTGFS-AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFE  291 (392)
Q Consensus       213 ~l~~~~~ta~~al~~~~~~-~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~  291 (392)
                      .+||.....+.-|+..++. .|.+|+|.|.+.-+|.-.+.++.. .|+.|.++......+                   .
T Consensus       136 ~~PcTp~avi~lL~~~~i~l~Gk~vvVvGrs~~VG~Pla~lL~~-~gAtVtv~hs~t~~l-------------------~  195 (285)
T PRK14191        136 FVPATPMGVMRLLKHYHIEIKGKDVVIIGASNIVGKPLAMLMLN-AGASVSVCHILTKDL-------------------S  195 (285)
T ss_pred             CCCCcHHHHHHHHHHhCCCCCCCEEEEECCCchhHHHHHHHHHH-CCCEEEEEeCCcHHH-------------------H
Confidence            3466665566666665553 699999999777999999999887 599887764322222                   2


Q ss_pred             cCCCCccEEEecCccHH-HHHHhcccCCeEEEEcCCC
Q 016265          292 DLPEKFDVVYDAIGQCD-RAVKAIKEGGTVVALTGAV  327 (392)
Q Consensus       292 ~~~~~~D~vid~~G~~~-~~~~~l~~~G~iv~~g~~~  327 (392)
                      +..+.+|+|+-++|... .--+.+++|..++.+|...
T Consensus       196 ~~~~~ADIvV~AvG~p~~i~~~~vk~GavVIDvGi~~  232 (285)
T PRK14191        196 FYTQNADIVCVGVGKPDLIKASMVKKGAVVVDIGINR  232 (285)
T ss_pred             HHHHhCCEEEEecCCCCcCCHHHcCCCcEEEEeeccc
Confidence            22346799999998321 1134679999999888643

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=94.35  E-value=0.81  Score=40.86  Aligned_cols=97  Identities=20%  Similarity=0.112  Sum_probs=61.1

Q ss_pred             HHhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHH----hcCCcE--EEeCCCCccccCCCCcc
Q 016265          225 LERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLK----SLGADL--AIDYTKDNFEDLPEKFD  298 (392)
Q Consensus       225 l~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~----~~G~~~--vi~~~~~~~~~~~~~~D  298 (392)
                      +...+++++++||-+| +| .|..+..+++.  +.+++.++.+++..+.++    ++|.+.  ++..+........+.||
T Consensus        71 ~~~l~~~~~~~VLeiG-~G-sG~~t~~la~~--~~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD  146 (212)
T PRK00312         71 TELLELKPGDRVLEIG-TG-SGYQAAVLAHL--VRRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWPAYAPFD  146 (212)
T ss_pred             HHhcCCCCCCEEEEEC-CC-ccHHHHHHHHH--hCEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCCcCCCcC
Confidence            4566788999999997 44 46667777765  347888888877665554    345432  12211111101124699


Q ss_pred             EEEecCc---cHHHHHHhcccCCeEEEEcC
Q 016265          299 VVYDAIG---QCDRAVKAIKEGGTVVALTG  325 (392)
Q Consensus       299 ~vid~~G---~~~~~~~~l~~~G~iv~~g~  325 (392)
                      +|+....   -.....+.|++||+++..-.
T Consensus       147 ~I~~~~~~~~~~~~l~~~L~~gG~lv~~~~  176 (212)
T PRK00312        147 RILVTAAAPEIPRALLEQLKEGGILVAPVG  176 (212)
T ss_pred             EEEEccCchhhhHHHHHhcCCCcEEEEEEc
Confidence            9886533   24678899999999876544

>PRK06482 short chain dehydrogenase; Provisional

Probab=94.33  E-value=0.19  Score=46.67  Aligned_cols=71  Identities=23%  Similarity=0.286  Sum_probs=47.0

Q ss_pred             CeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHh-cCCc-EE--EeCCCCc-ccc-------CCCCccEEE
Q 016265          234 KSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKS-LGAD-LA--IDYTKDN-FED-------LPEKFDVVY  301 (392)
Q Consensus       234 ~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~-~G~~-~v--i~~~~~~-~~~-------~~~~~D~vi  301 (392)
                      .++||+||+|++|...++.+.. .|.+++++.++.++++.+++ .+.. .+  .|..+.. +.+       ...++|++|
T Consensus         3 k~vlVtGasg~IG~~la~~L~~-~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi   81 (276)
T PRK06482          3 KTWFITGASSGFGRGMTERLLA-RGDRVAATVRRPDALDDLKARYGDRLWVLQLDVTDSAAVRAVVDRAFAALGRIDVVV   81 (276)
T ss_pred             CEEEEecCCCHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHhccCceEEEEccCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence            5799999999999998776666 49999999988877666543 2322 11  2322221 111       124689999


Q ss_pred             ecCc
Q 016265          302 DAIG  305 (392)
Q Consensus       302 d~~G  305 (392)
                      .+.|
T Consensus        82 ~~ag   85 (276)
T PRK06482         82 SNAG   85 (276)
T ss_pred             ECCC
Confidence            9876

>PRK05875 short chain dehydrogenase; Provisional

Probab=94.33  E-value=0.14  Score=47.61  Aligned_cols=40  Identities=23%  Similarity=0.294  Sum_probs=33.5

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHH
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLE  272 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~  272 (392)
                      ++.++||+|++|++|...++.+.. .|++|+++.++.++.+
T Consensus         6 ~~k~vlItGasg~IG~~la~~l~~-~G~~V~~~~r~~~~~~   45 (276)
T PRK05875          6 QDRTYLVTGGGSGIGKGVAAGLVA-AGAAVMIVGRNPDKLA   45 (276)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHH-CCCeEEEEeCCHHHHH
Confidence            468999999999999999988777 4999998888766544

>PRK06138 short chain dehydrogenase; Provisional

Probab=94.32  E-value=0.19  Score=45.75  Aligned_cols=73  Identities=25%  Similarity=0.357  Sum_probs=46.6

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHH-hc--CCc-EEE--eCCCCc-ccc-------CCCCc
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLK-SL--GAD-LAI--DYTKDN-FED-------LPEKF  297 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~-~~--G~~-~vi--~~~~~~-~~~-------~~~~~  297 (392)
                      .|.+++|+||+|++|...++.... .|++++++.++.++.+... .+  +.. ..+  |..+.. ..+       ...++
T Consensus         4 ~~k~~lItG~sg~iG~~la~~l~~-~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~i   82 (252)
T PRK06138          4 AGRVAIVTGAGSGIGRATAKLFAR-EGARVVVADRDAEAAERVAAAIAAGGRAFARQGDVGSAEAVEALVDFVAARWGRL   82 (252)
T ss_pred             CCcEEEEeCCCchHHHHHHHHHHH-CCCeEEEecCCHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence            467999999999999988876655 4999988888766544332 22  322 222  222211 111       12478


Q ss_pred             cEEEecCc
Q 016265          298 DVVYDAIG  305 (392)
Q Consensus       298 D~vid~~G  305 (392)
                      |++|.+.|
T Consensus        83 d~vi~~ag   90 (252)
T PRK06138         83 DVLVNNAG   90 (252)
T ss_pred             CEEEECCC
Confidence            99999877

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=94.30  E-value=0.096  Score=44.01  Aligned_cols=85  Identities=25%  Similarity=0.327  Sum_probs=53.8

Q ss_pred             EEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCC-------cc--ccCCCCccEEEecCc-
Q 016265          236 ILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKD-------NF--EDLPEKFDVVYDAIG-  305 (392)
Q Consensus       236 VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~-------~~--~~~~~~~D~vid~~G-  305 (392)
                      |+|+| +|++|...+..++. .|.+|.++.+.+ +.+.+++.|.....+..+.       ..  ....+.+|++|-|+- 
T Consensus         1 I~I~G-~GaiG~~~a~~L~~-~g~~V~l~~r~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~vKa   77 (151)
T PF02558_consen    1 ILIIG-AGAIGSLYAARLAQ-AGHDVTLVSRSP-RLEAIKEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVIVAVKA   77 (151)
T ss_dssp             EEEES-TSHHHHHHHHHHHH-TTCEEEEEESHH-HHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE-SSG
T ss_pred             CEEEC-cCHHHHHHHHHHHH-CCCceEEEEccc-cHHhhhheeEEEEecccceecccccccCcchhccCCCcEEEEEecc
Confidence            68998 99999887777766 499999999888 7787777664322111000       00  112457999999985 


Q ss_pred             -cHHHHHH----hcccCCeEEEE
Q 016265          306 -QCDRAVK----AIKEGGTVVAL  323 (392)
Q Consensus       306 -~~~~~~~----~l~~~G~iv~~  323 (392)
                       ..+.+++    .+.++..++.+
T Consensus        78 ~~~~~~l~~l~~~~~~~t~iv~~  100 (151)
T PF02558_consen   78 YQLEQALQSLKPYLDPNTTIVSL  100 (151)
T ss_dssp             GGHHHHHHHHCTGEETTEEEEEE
T ss_pred             cchHHHHHHHhhccCCCcEEEEE
Confidence             3444444    44455566655

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase

Probab=94.29  E-value=0.21  Score=45.49  Aligned_cols=42  Identities=21%  Similarity=0.287  Sum_probs=33.9

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHH
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFL  274 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~  274 (392)
                      ++.++||+||+|++|...+..+.. .|+++++++++.++.+.+
T Consensus         2 ~~~~ilItGas~~iG~~la~~l~~-~g~~v~~~~r~~~~~~~~   43 (250)
T TIGR03206         2 KDKTAIVTGGGGGIGGATCRRFAE-EGAKVAVFDLNREAAEKV   43 (250)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHH-CCCEEEEecCCHHHHHHH
Confidence            468899999999999998887766 599998888877665443

Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.

>PRK06198 short chain dehydrogenase; Provisional

Probab=94.27  E-value=0.14  Score=46.93  Aligned_cols=73  Identities=26%  Similarity=0.374  Sum_probs=47.6

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCe-EEEEeCCcccHH----HHHhcCCcE---EEeCCCCc-cccC-------CC
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGAS-RVAATSSTRNLE----FLKSLGADL---AIDYTKDN-FEDL-------PE  295 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~-vv~~~~~~~~~~----~~~~~G~~~---vi~~~~~~-~~~~-------~~  295 (392)
                      .+.+++|+||+|++|...++.+.. .|++ ++++.+++++..    .+++.+...   .+|..+.+ +.+.       .+
T Consensus         5 ~~k~vlItGa~g~iG~~la~~l~~-~G~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g   83 (260)
T PRK06198          5 DGKVALVTGGTQGLGAAIARAFAE-RGAAGLVICGRNAEKGEAQAAELEALGAKAVFVQADLSDVEDCRRVVAAADEAFG   83 (260)
T ss_pred             CCcEEEEeCCCchHHHHHHHHHHH-CCCCeEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence            578899999999999998887776 4998 777777665544    223344332   22333221 1111       13


Q ss_pred             CccEEEecCc
Q 016265          296 KFDVVYDAIG  305 (392)
Q Consensus       296 ~~D~vid~~G  305 (392)
                      ++|++|.+.|
T Consensus        84 ~id~li~~ag   93 (260)
T PRK06198         84 RLDALVNAAG   93 (260)
T ss_pred             CCCEEEECCC
Confidence            6899999976

>TIGR00438 rrmJ cell division protein FtsJ

Probab=94.25  E-value=0.42  Score=41.85  Aligned_cols=90  Identities=23%  Similarity=0.244  Sum_probs=53.3

Q ss_pred             cCCCCCCeEEEEcCCCcHHHHHHHHHHHhc-CCeEEEEeCCcccHHHHHhcCCcEE-EeCCCCcc-c----cC-CCCccE
Q 016265          228 TGFSAGKSILVLNGSGGVGSLVIQLAKQVF-GASRVAATSSTRNLEFLKSLGADLA-IDYTKDNF-E----DL-PEKFDV  299 (392)
Q Consensus       228 ~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~-G~~vv~~~~~~~~~~~~~~~G~~~v-i~~~~~~~-~----~~-~~~~D~  299 (392)
                      ..+++|++||.+| +|+-+.. ..+++... ..+++.++.++.+    +..+...+ .|..+... .    .. .+++|+
T Consensus        28 ~~i~~g~~VLDiG-~GtG~~~-~~l~~~~~~~~~v~~vDis~~~----~~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~  101 (188)
T TIGR00438        28 KLIKPGDTVLDLG-AAPGGWS-QVAVEQVGGKGRVIAVDLQPMK----PIENVDFIRGDFTDEEVLNKIRERVGDDKVDV  101 (188)
T ss_pred             cccCCCCEEEEec-CCCCHHH-HHHHHHhCCCceEEEEeccccc----cCCCceEEEeeCCChhHHHHHHHHhCCCCccE
Confidence            4578999999998 6665554 44444422 3468888887754    11233322 13322211 0    11 346999


Q ss_pred             EEe-c----Cc---------------cHHHHHHhcccCCeEEEE
Q 016265          300 VYD-A----IG---------------QCDRAVKAIKEGGTVVAL  323 (392)
Q Consensus       300 vid-~----~G---------------~~~~~~~~l~~~G~iv~~  323 (392)
                      |+. .    .|               .+..+.++|++||+++..
T Consensus       102 V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~  145 (188)
T TIGR00438       102 VMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVK  145 (188)
T ss_pred             EEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEE
Confidence            995 2    22               135678899999998864

>PRK12746 short chain dehydrogenase; Provisional

Probab=94.16  E-value=0.38  Score=43.95  Aligned_cols=39  Identities=23%  Similarity=0.238  Sum_probs=30.2

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEE-eCCcccH
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAA-TSSTRNL  271 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~-~~~~~~~  271 (392)
                      .+.+++|+||+|++|...++.+.. .|+++++. .++.++.
T Consensus         5 ~~~~ilItGasg~iG~~la~~l~~-~G~~v~i~~~r~~~~~   44 (254)
T PRK12746          5 DGKVALVTGASRGIGRAIAMRLAN-DGALVAIHYGRNKQAA   44 (254)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHH-CCCEEEEEcCCCHHHH
Confidence            367899999999999998887666 49988775 4555544

>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=94.16  E-value=0.24  Score=45.44  Aligned_cols=35  Identities=26%  Similarity=0.343  Sum_probs=30.4

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCC
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSS  267 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~  267 (392)
                      .|.+|||+||+|++|...++.... .|++++++.++
T Consensus        14 ~~k~vlItGas~gIG~~ia~~l~~-~G~~v~~~~~~   48 (258)
T PRK06935         14 DGKVAIVTGGNTGLGQGYAVALAK-AGADIIITTHG   48 (258)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHH-CCCEEEEEeCC
Confidence            578999999999999998887766 59999988876

>PRK07856 short chain dehydrogenase; Provisional

Probab=94.15  E-value=0.19  Score=45.95  Aligned_cols=38  Identities=24%  Similarity=0.404  Sum_probs=31.8

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCccc
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRN  270 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~  270 (392)
                      .|++++|+||+|++|...++.+.. .|+++++++++.++
T Consensus         5 ~~k~~lItGas~gIG~~la~~l~~-~g~~v~~~~r~~~~   42 (252)
T PRK07856          5 TGRVVLVTGGTRGIGAGIARAFLA-AGATVVVCGRRAPE   42 (252)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHH-CCCEEEEEeCChhh
Confidence            478999999999999998877766 49999988886554

>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.15  E-value=0.47  Score=44.62  Aligned_cols=83  Identities=25%  Similarity=0.239  Sum_probs=53.5

Q ss_pred             HHHhcC-CCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCCccccCCCCccEEEe
Q 016265          224 GLERTG-FSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFEDLPEKFDVVYD  302 (392)
Q Consensus       224 al~~~~-~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~~~~~~~D~vid  302 (392)
                      .|+..+ .-.|.+|+|+|.+|-+|...++++.. .|+.|.++.+....+  .+                 ..+++|++|.
T Consensus       149 ~L~~~~i~l~Gk~vvViG~gg~vGkpia~~L~~-~gatVtv~~~~t~~L--~~-----------------~~~~aDIvI~  208 (283)
T PRK14192        149 LLKAYNIELAGKHAVVVGRSAILGKPMAMMLLN-ANATVTICHSRTQNL--PE-----------------LVKQADIIVG  208 (283)
T ss_pred             HHHHcCCCCCCCEEEEECCcHHHHHHHHHHHHh-CCCEEEEEeCCchhH--HH-----------------HhccCCEEEE
Confidence            444444 35789999999444499999998887 499666665522211  11                 1246799999


Q ss_pred             cCccHH-HHHHhcccCCeEEEEcCC
Q 016265          303 AIGQCD-RAVKAIKEGGTVVALTGA  326 (392)
Q Consensus       303 ~~G~~~-~~~~~l~~~G~iv~~g~~  326 (392)
                      ++|... --.+.++++-.++.++..
T Consensus       209 AtG~~~~v~~~~lk~gavViDvg~n  233 (283)
T PRK14192        209 AVGKPELIKKDWIKQGAVVVDAGFH  233 (283)
T ss_pred             ccCCCCcCCHHHcCCCCEEEEEEEe
Confidence            998321 112458888888887643

>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]

Probab=94.13  E-value=0.21  Score=47.75  Aligned_cols=86  Identities=20%  Similarity=0.256  Sum_probs=66.1

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCCccccCCCCccEEEecCc-c---
Q 016265          231 SAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFEDLPEKFDVVYDAIG-Q---  306 (392)
Q Consensus       231 ~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~~~~~~~D~vid~~G-~---  306 (392)
                      ..|++|.|+| .|.||+..++-++. +|..+....+...+.+...++++.      ..++.+.....|+++-|.. .   
T Consensus       160 ~~gK~vgilG-~G~IG~~ia~rL~~-Fg~~i~y~~r~~~~~~~~~~~~~~------~~d~~~~~~~sD~ivv~~pLt~~T  231 (336)
T KOG0069|consen  160 LEGKTVGILG-LGRIGKAIAKRLKP-FGCVILYHSRTQLPPEEAYEYYAE------FVDIEELLANSDVIVVNCPLTKET  231 (336)
T ss_pred             ccCCEEEEec-CcHHHHHHHHhhhh-ccceeeeecccCCchhhHHHhccc------ccCHHHHHhhCCEEEEecCCCHHH
Confidence            4689999998 99999999999998 795555666777778888777765      2345556667888887654 1   


Q ss_pred             --H--HHHHHhcccCCeEEEEc
Q 016265          307 --C--DRAVKAIKEGGTVVALT  324 (392)
Q Consensus       307 --~--~~~~~~l~~~G~iv~~g  324 (392)
                        +  ...+..|++++.+|..+
T Consensus       232 ~~liNk~~~~~mk~g~vlVN~a  253 (336)
T KOG0069|consen  232 RHLINKKFIEKMKDGAVLVNTA  253 (336)
T ss_pred             HHHhhHHHHHhcCCCeEEEecc
Confidence              2  57888999999998764

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=94.13  E-value=0.48  Score=40.42  Aligned_cols=86  Identities=16%  Similarity=0.101  Sum_probs=51.2

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCCccccCCCCccEEEecCcc--HHH
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFEDLPEKFDVVYDAIGQ--CDR  309 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~~~~~~~D~vid~~G~--~~~  309 (392)
                      .|.+|+|.| +|.+|.--++.... .|+++.++.  ++..+.+++++.-. ++.+.-. .....++|+||-+++.  .+.
T Consensus        12 ~~~~vlVvG-GG~va~rka~~Ll~-~ga~V~VIs--p~~~~~l~~l~~i~-~~~~~~~-~~dl~~a~lViaaT~d~e~N~   85 (157)
T PRK06719         12 HNKVVVIIG-GGKIAYRKASGLKD-TGAFVTVVS--PEICKEMKELPYIT-WKQKTFS-NDDIKDAHLIYAATNQHAVNM   85 (157)
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHh-CCCEEEEEc--CccCHHHHhccCcE-EEecccC-hhcCCCceEEEECCCCHHHHH
Confidence            578999998 99999987776655 599888773  34444444554211 2211111 1123578999999984  444


Q ss_pred             HHHhcccCCeEEEE
Q 016265          310 AVKAIKEGGTVVAL  323 (392)
Q Consensus       310 ~~~~l~~~G~iv~~  323 (392)
                      .+...+..+.++..
T Consensus        86 ~i~~~a~~~~~vn~   99 (157)
T PRK06719         86 MVKQAAHDFQWVNV   99 (157)
T ss_pred             HHHHHHHHCCcEEE
Confidence            44444433334443

>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.12  E-value=0.33  Score=45.47  Aligned_cols=95  Identities=25%  Similarity=0.278  Sum_probs=65.5

Q ss_pred             ccchhHHHHHHHHHhcCC-CCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCCccc
Q 016265          213 GLPLAIETAYEGLERTGF-SAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFE  291 (392)
Q Consensus       213 ~l~~~~~ta~~al~~~~~-~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~  291 (392)
                      ..||.....+..|+..++ -.|.+|+|+|.+.-+|.-.+.++.. .|+.|.++.....                   +..
T Consensus       137 ~~PcTp~aii~lL~~~~i~l~Gk~vvViGrs~iVGkPla~lL~~-~~atVt~~hs~t~-------------------~l~  196 (285)
T PRK14189        137 FRPCTPYGVMKMLESIGIPLRGAHAVVIGRSNIVGKPMAMLLLQ-AGATVTICHSKTR-------------------DLA  196 (285)
T ss_pred             CcCCCHHHHHHHHHHcCCCCCCCEEEEECCCCccHHHHHHHHHH-CCCEEEEecCCCC-------------------CHH
Confidence            346665555556666554 3699999999777889999999887 5998887543222                   223


Q ss_pred             cCCCCccEEEecCccHH-HHHHhcccCCeEEEEcCCC
Q 016265          292 DLPEKFDVVYDAIGQCD-RAVKAIKEGGTVVALTGAV  327 (392)
Q Consensus       292 ~~~~~~D~vid~~G~~~-~~~~~l~~~G~iv~~g~~~  327 (392)
                      +..+..|+|+-++|... ---+.+++|..++.+|...
T Consensus       197 ~~~~~ADIVV~avG~~~~i~~~~ik~gavVIDVGin~  233 (285)
T PRK14189        197 AHTRQADIVVAAVGKRNVLTADMVKPGATVIDVGMNR  233 (285)
T ss_pred             HHhhhCCEEEEcCCCcCccCHHHcCCCCEEEEccccc
Confidence            33456799999998321 1126799999999988644

>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=94.07  E-value=0.27  Score=45.02  Aligned_cols=73  Identities=21%  Similarity=0.273  Sum_probs=45.8

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCC-cccHHHHHhcCCcE-EEeCCCCc-ccc-------CCCCccEEE
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSS-TRNLEFLKSLGADL-AIDYTKDN-FED-------LPEKFDVVY  301 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~-~~~~~~~~~~G~~~-vi~~~~~~-~~~-------~~~~~D~vi  301 (392)
                      .|.+++|+||+|++|...++.... .|++++++.+. ++..+.+++.+... ..|..+.. ..+       ..+++|++|
T Consensus         6 ~~k~~lItGas~gIG~~~a~~l~~-~G~~v~~~~~~~~~~~~~l~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~li   84 (255)
T PRK06463          6 KGKVALITGGTRGIGRAIAEAFLR-EGAKVAVLYNSAENEAKELREKGVFTIKCDVGNRDQVKKSKEVVEKEFGRVDVLV   84 (255)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHH-CCCEEEEEeCCcHHHHHHHHhCCCeEEEecCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence            468999999999999998877666 49988877653 33444444434321 12332221 111       124689999


Q ss_pred             ecCc
Q 016265          302 DAIG  305 (392)
Q Consensus       302 d~~G  305 (392)
                      .+.|
T Consensus        85 ~~ag   88 (255)
T PRK06463         85 NNAG   88 (255)
T ss_pred             ECCC
Confidence            8876

>PRK08303 short chain dehydrogenase; Provisional

Probab=94.05  E-value=0.25  Score=46.96  Aligned_cols=35  Identities=26%  Similarity=0.248  Sum_probs=30.0

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCC
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSS  267 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~  267 (392)
                      .|.+++|+||++++|.+.++.... .|++|+++.++
T Consensus         7 ~~k~~lITGgs~GIG~aia~~la~-~G~~Vv~~~r~   41 (305)
T PRK08303          7 RGKVALVAGATRGAGRGIAVELGA-AGATVYVTGRS   41 (305)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHH-CCCEEEEEecc
Confidence            478999999999999998887766 59999988875

>PRK06179 short chain dehydrogenase; Provisional

Probab=94.01  E-value=0.13  Score=47.62  Aligned_cols=70  Identities=21%  Similarity=0.334  Sum_probs=45.3

Q ss_pred             CCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcE-EEeCCCCc-ccc-------CCCCccEEEec
Q 016265          233 GKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADL-AIDYTKDN-FED-------LPEKFDVVYDA  303 (392)
Q Consensus       233 g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~-vi~~~~~~-~~~-------~~~~~D~vid~  303 (392)
                      +.+++|+||+|++|...++.+.. .|++|++++++.++.+..  .+... ..|..+.. +.+       ..+.+|++|.+
T Consensus         4 ~~~vlVtGasg~iG~~~a~~l~~-~g~~V~~~~r~~~~~~~~--~~~~~~~~D~~d~~~~~~~~~~~~~~~g~~d~li~~   80 (270)
T PRK06179          4 SKVALVTGASSGIGRATAEKLAR-AGYRVFGTSRNPARAAPI--PGVELLELDVTDDASVQAAVDEVIARAGRIDVLVNN   80 (270)
T ss_pred             CCEEEEecCCCHHHHHHHHHHHH-CCCEEEEEeCChhhcccc--CCCeeEEeecCCHHHHHHHHHHHHHhCCCCCEEEEC
Confidence            56899999999999988877666 499999888876554322  12221 22332221 111       12468999999


Q ss_pred             Cc
Q 016265          304 IG  305 (392)
Q Consensus       304 ~G  305 (392)
                      .|
T Consensus        81 ag   82 (270)
T PRK06179         81 AG   82 (270)
T ss_pred             CC
Confidence            87

>KOG1199 consensus Short-chain alcohol dehydrogenase/3-hydroxyacyl-CoA dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=94.00  E-value=0.25  Score=42.26  Aligned_cols=74  Identities=20%  Similarity=0.280  Sum_probs=54.0

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCc-ccHHHHHhcCCcEEEeCCCCccccC-----------CCCcc
Q 016265          231 SAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSST-RNLEFLKSLGADLAIDYTKDNFEDL-----------PEKFD  298 (392)
Q Consensus       231 ~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~-~~~~~~~~~G~~~vi~~~~~~~~~~-----------~~~~D  298 (392)
                      .+|-.-||+||++++|.+++..... .|+.+++.+-.. .-.+.++++|-..++...+..-++.           -+..|
T Consensus         7 ~kglvalvtggasglg~ataerlak-qgasv~lldlp~skg~~vakelg~~~vf~padvtsekdv~aala~ak~kfgrld   85 (260)
T KOG1199|consen    7 TKGLVALVTGGASGLGKATAERLAK-QGASVALLDLPQSKGADVAKELGGKVVFTPADVTSEKDVRAALAKAKAKFGRLD   85 (260)
T ss_pred             hcCeeEEeecCcccccHHHHHHHHh-cCceEEEEeCCcccchHHHHHhCCceEEeccccCcHHHHHHHHHHHHhhcccee
Confidence            4566779999999999998876555 499999998644 4467889999887776544322211           23579


Q ss_pred             EEEecCc
Q 016265          299 VVYDAIG  305 (392)
Q Consensus       299 ~vid~~G  305 (392)
                      +.++|.|
T Consensus        86 ~~vncag   92 (260)
T KOG1199|consen   86 ALVNCAG   92 (260)
T ss_pred             eeeeccc
Confidence            9999988

>PRK07067 sorbitol dehydrogenase; Provisional

Probab=93.98  E-value=0.26  Score=45.15  Aligned_cols=73  Identities=21%  Similarity=0.342  Sum_probs=47.8

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHH-hcCCc-EEE--eCCCC-cccc-------CCCCccE
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLK-SLGAD-LAI--DYTKD-NFED-------LPEKFDV  299 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~-~~G~~-~vi--~~~~~-~~~~-------~~~~~D~  299 (392)
                      .+.+++|+||+|++|...+..+.. .|++|++++++.++.+.+. +++.. ..+  |..+. ...+       ..+.+|+
T Consensus         5 ~~~~vlItGas~~iG~~ia~~l~~-~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~   83 (257)
T PRK07067          5 QGKVALLTGAASGIGEAVAERYLA-EGARVVIADIKPARARLAALEIGPAAIAVSLDVTRQDSIDRIVAAAVERFGGIDI   83 (257)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHH-cCCEEEEEcCCHHHHHHHHHHhCCceEEEEccCCCHHHHHHHHHHHHHHcCCCCE
Confidence            367899999999999998887766 4999999988877665543 33322 112  22221 1111       1246899


Q ss_pred             EEecCc
Q 016265          300 VYDAIG  305 (392)
Q Consensus       300 vid~~G  305 (392)
                      +|.+.|
T Consensus        84 li~~ag   89 (257)
T PRK07067         84 LFNNAA   89 (257)
T ss_pred             EEECCC
Confidence            998865

>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases

Probab=93.98  E-value=0.71  Score=41.15  Aligned_cols=97  Identities=26%  Similarity=0.290  Sum_probs=61.8

Q ss_pred             HhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcC--CeEEEEeCCcccHHHHHhcCC----cEEEeCCCCccccCCCCccE
Q 016265          226 ERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFG--ASRVAATSSTRNLEFLKSLGA----DLAIDYTKDNFEDLPEKFDV  299 (392)
Q Consensus       226 ~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G--~~vv~~~~~~~~~~~~~~~G~----~~vi~~~~~~~~~~~~~~D~  299 (392)
                      ......++.+|+-+| +|. |..+..+++.. +  .+++.++.++...+.+++...    -.++..+-.......+.+|+
T Consensus        33 ~~~~~~~~~~vldiG-~G~-G~~~~~~~~~~-~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~  109 (223)
T TIGR01934        33 KLIGVFKGQKVLDVA-CGT-GDLAIELAKSA-PDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEALPFEDNSFDA  109 (223)
T ss_pred             HHhccCCCCeEEEeC-CCC-ChhHHHHHHhc-CCCceEEEEECCHHHHHHHHHHhccCCCceEEecchhcCCCCCCcEEE
Confidence            344455888999997 554 77888888873 5  478888888887777765321    11221111111111346999


Q ss_pred             EEecCc---------cHHHHHHhcccCCeEEEEcC
Q 016265          300 VYDAIG---------QCDRAVKAIKEGGTVVALTG  325 (392)
Q Consensus       300 vid~~G---------~~~~~~~~l~~~G~iv~~g~  325 (392)
                      ++...+         .++.+.+.|++||+++.+..
T Consensus       110 i~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  144 (223)
T TIGR01934       110 VTIAFGLRNVTDIQKALREMYRVLKPGGRLVILEF  144 (223)
T ss_pred             EEEeeeeCCcccHHHHHHHHHHHcCCCcEEEEEEe
Confidence            876432         14778889999999987654

Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.

>PRK10538 malonic semialdehyde reductase; Provisional

Probab=93.96  E-value=0.26  Score=44.97  Aligned_cols=70  Identities=26%  Similarity=0.358  Sum_probs=47.1

Q ss_pred             eEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHH-hcCCcE-EE--eCCCC-cccc-------CCCCccEEEe
Q 016265          235 SILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLK-SLGADL-AI--DYTKD-NFED-------LPEKFDVVYD  302 (392)
Q Consensus       235 ~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~-~~G~~~-vi--~~~~~-~~~~-------~~~~~D~vid  302 (392)
                      +|+|+||+|++|...+..+.. .|++|+++++++++++.+. .++... .+  |..+. .+.+       ..+++|++|.
T Consensus         2 ~vlItGasg~iG~~la~~l~~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~~~id~vi~   80 (248)
T PRK10538          2 IVLVTGATAGFGECITRRFIQ-QGHKVIATGRRQERLQELKDELGDNLYIAQLDVRNRAAIEEMLASLPAEWRNIDVLVN   80 (248)
T ss_pred             EEEEECCCchHHHHHHHHHHH-CCCEEEEEECCHHHHHHHHHHhccceEEEEecCCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence            689999999999998888776 5999999998877766554 344322 12  32221 1111       1246899998


Q ss_pred             cCc
Q 016265          303 AIG  305 (392)
Q Consensus       303 ~~G  305 (392)
                      +.|
T Consensus        81 ~ag   83 (248)
T PRK10538         81 NAG   83 (248)
T ss_pred             CCC
Confidence            865

>KOG1208 consensus Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport and catabolism]

Probab=93.90  E-value=0.32  Score=46.41  Aligned_cols=43  Identities=26%  Similarity=0.191  Sum_probs=35.3

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHH
Q 016265          231 SAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFL  274 (392)
Q Consensus       231 ~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~  274 (392)
                      -.|.+++|+|+.+|+|..++.-... .|++||+..++.++.+.+
T Consensus        33 ~~~~~~vVTGansGIG~eta~~La~-~Ga~Vv~~~R~~~~~~~~   75 (314)
T KOG1208|consen   33 LSGKVALVTGATSGIGFETARELAL-RGAHVVLACRNEERGEEA   75 (314)
T ss_pred             CCCcEEEEECCCCchHHHHHHHHHh-CCCEEEEEeCCHHHHHHH
Confidence            3568999999999999998876656 499999999988765554

>PRK13940 glutamyl-tRNA reductase; Provisional

Probab=93.89  E-value=0.3  Score=48.55  Aligned_cols=74  Identities=15%  Similarity=0.269  Sum_probs=49.6

Q ss_pred             CCCCCCeEEEEcCCCcHHHHHHHHHHHhcCC-eEEEEeCCcccHHHH-HhcCCcEEEeCCCCccccCCCCccEEEecCcc
Q 016265          229 GFSAGKSILVLNGSGGVGSLVIQLAKQVFGA-SRVAATSSTRNLEFL-KSLGADLAIDYTKDNFEDLPEKFDVVYDAIGQ  306 (392)
Q Consensus       229 ~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~-~vv~~~~~~~~~~~~-~~~G~~~vi~~~~~~~~~~~~~~D~vid~~G~  306 (392)
                      .--.|.+|+|+| +|++|.+++..+.. .|+ +++++.++.+|.+.+ .+++...++.++  +..+....+|+||.|+++
T Consensus       177 ~~l~~kkvlviG-aG~~a~~va~~L~~-~g~~~I~V~nRt~~ra~~La~~~~~~~~~~~~--~l~~~l~~aDiVI~aT~a  252 (414)
T PRK13940        177 DNISSKNVLIIG-AGQTGELLFRHVTA-LAPKQIMLANRTIEKAQKITSAFRNASAHYLS--ELPQLIKKADIIIAAVNV  252 (414)
T ss_pred             cCccCCEEEEEc-CcHHHHHHHHHHHH-cCCCEEEEECCCHHHHHHHHHHhcCCeEecHH--HHHHHhccCCEEEECcCC
Confidence            334678999998 89999998888877 486 466667777775444 456522233321  223334578999999984

>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=93.89  E-value=0.79  Score=38.25  Aligned_cols=93  Identities=26%  Similarity=0.267  Sum_probs=63.5

Q ss_pred             cchhHHHHHHHHHhcCC-CCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCCcccc
Q 016265          214 LPLAIETAYEGLERTGF-SAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFED  292 (392)
Q Consensus       214 l~~~~~ta~~al~~~~~-~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~~  292 (392)
                      +|+........++..++ -.|.+|+|+|.+..+|.-.+.++.. .|+.+.++......++                   +
T Consensus         8 ~p~t~~a~~~ll~~~~~~~~gk~v~VvGrs~~vG~pla~lL~~-~gatV~~~~~~t~~l~-------------------~   67 (140)
T cd05212           8 VSPVAKAVKELLNKEGVRLDGKKVLVVGRSGIVGAPLQCLLQR-DGATVYSCDWKTIQLQ-------------------S   67 (140)
T ss_pred             cccHHHHHHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHHH-CCCEEEEeCCCCcCHH-------------------H
Confidence            45554444555555544 4699999999999999998888887 5998888865432222                   2


Q ss_pred             CCCCccEEEecCccHH-HHHHhcccCCeEEEEcCC
Q 016265          293 LPEKFDVVYDAIGQCD-RAVKAIKEGGTVVALTGA  326 (392)
Q Consensus       293 ~~~~~D~vid~~G~~~-~~~~~l~~~G~iv~~g~~  326 (392)
                      ..+..|+|+-++|... ---+.+++|-.++.+|..
T Consensus        68 ~v~~ADIVvsAtg~~~~i~~~~ikpGa~Vidvg~~  102 (140)
T cd05212          68 KVHDADVVVVGSPKPEKVPTEWIKPGATVINCSPT  102 (140)
T ss_pred             HHhhCCEEEEecCCCCccCHHHcCCCCEEEEcCCC
Confidence            2346799999988431 223468998888877643

NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional

>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated

Probab=93.89  E-value=0.28  Score=44.98  Aligned_cols=73  Identities=22%  Similarity=0.358  Sum_probs=47.7

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHH----HhcCCcE-E--EeCCCCc-cc-------cCCCC
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFL----KSLGADL-A--IDYTKDN-FE-------DLPEK  296 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~----~~~G~~~-v--i~~~~~~-~~-------~~~~~  296 (392)
                      .+.+|+|+||+|++|...+..... .|+++++++++.++.+.+    ++.|.+. +  .|..+.. ..       +...+
T Consensus        10 ~~k~vlVtG~s~gIG~~la~~l~~-~G~~vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~~~   88 (255)
T PRK06113         10 DGKCAIITGAGAGIGKEIAITFAT-AGASVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFALSKLGK   88 (255)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHH-CCCeEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            478999999999999998877666 499999888776655433    2334322 2  2333221 11       11246


Q ss_pred             ccEEEecCc
Q 016265          297 FDVVYDAIG  305 (392)
Q Consensus       297 ~D~vid~~G  305 (392)
                      +|++|.+.|
T Consensus        89 ~d~li~~ag   97 (255)
T PRK06113         89 VDILVNNAG   97 (255)
T ss_pred             CCEEEECCC
Confidence            899999876

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=93.87  E-value=0.84  Score=40.75  Aligned_cols=90  Identities=21%  Similarity=0.239  Sum_probs=56.8

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcc-cHHHHHhcCCcEEEeCCCCccccCCCCccEEEecCcc--H-
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTR-NLEFLKSLGADLAIDYTKDNFEDLPEKFDVVYDAIGQ--C-  307 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~-~~~~~~~~G~~~vi~~~~~~~~~~~~~~D~vid~~G~--~-  307 (392)
                      .|.+|||.| +|.+|..-+..+.. .|++|++++.... .++.+.+.|- ..+...+.. .....++|+||-++|.  + 
T Consensus         8 ~gk~vlVvG-gG~va~rk~~~Ll~-~ga~VtVvsp~~~~~l~~l~~~~~-i~~~~~~~~-~~dl~~~~lVi~at~d~~ln   83 (205)
T TIGR01470         8 EGRAVLVVG-GGDVALRKARLLLK-AGAQLRVIAEELESELTLLAEQGG-ITWLARCFD-ADILEGAFLVIAATDDEELN   83 (205)
T ss_pred             CCCeEEEEC-cCHHHHHHHHHHHH-CCCEEEEEcCCCCHHHHHHHHcCC-EEEEeCCCC-HHHhCCcEEEEECCCCHHHH
Confidence            478999998 99999998888877 5998888876432 3334444442 112111111 1223589999999984  3 


Q ss_pred             HHHHHhcccCCeEEEEcC
Q 016265          308 DRAVKAIKEGGTVVALTG  325 (392)
Q Consensus       308 ~~~~~~l~~~G~iv~~g~  325 (392)
                      .......+..|..|....
T Consensus        84 ~~i~~~a~~~~ilvn~~d  101 (205)
T TIGR01470        84 RRVAHAARARGVPVNVVD  101 (205)
T ss_pred             HHHHHHHHHcCCEEEECC
Confidence            345555556777775543

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated

Probab=93.84  E-value=0.29  Score=44.88  Aligned_cols=73  Identities=19%  Similarity=0.257  Sum_probs=45.3

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcc--cHHHHHhcCCcE-EE--eCCCC-cccc-------CCCCcc
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTR--NLEFLKSLGADL-AI--DYTKD-NFED-------LPEKFD  298 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~--~~~~~~~~G~~~-vi--~~~~~-~~~~-------~~~~~D  298 (392)
                      .|.+++|+|++|++|.+.++.... .|++|++++....  ..+.+++.+... .+  |..+. ...+       ..+++|
T Consensus         9 ~~k~~lItG~~~gIG~a~a~~l~~-~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~~D   87 (253)
T PRK08993          9 EGKVAVVTGCDTGLGQGMALGLAE-AGCDIVGINIVEPTETIEQVTALGRRFLSLTADLRKIDGIPALLERAVAEFGHID   87 (253)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHH-CCCEEEEecCcchHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHhCCCC
Confidence            478999999999999998887766 4999887765432  223334444321 22  22211 1111       124689


Q ss_pred             EEEecCc
Q 016265          299 VVYDAIG  305 (392)
Q Consensus       299 ~vid~~G  305 (392)
                      ++|++.|
T Consensus        88 ~li~~Ag   94 (253)
T PRK08993         88 ILVNNAG   94 (253)
T ss_pred             EEEECCC
Confidence            9999876

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=93.83  E-value=0.77  Score=39.60  Aligned_cols=94  Identities=24%  Similarity=0.256  Sum_probs=57.2

Q ss_pred             ccchhHHHHHHHHHhc-CCCCCCeEEEEcCCCc-HHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCCcc
Q 016265          213 GLPLAIETAYEGLERT-GFSAGKSILVLNGSGG-VGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNF  290 (392)
Q Consensus       213 ~l~~~~~ta~~al~~~-~~~~g~~VlI~Ga~G~-vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~  290 (392)
                      ..|+....+...++.. .--.|.+|+|+| +|. +|..++..++. .|++++++.+..+++                   
T Consensus        23 ~~p~~~~a~v~l~~~~~~~l~gk~vlViG-~G~~~G~~~a~~L~~-~g~~V~v~~r~~~~l-------------------   81 (168)
T cd01080          23 FIPCTPAGILELLKRYGIDLAGKKVVVVG-RSNIVGKPLAALLLN-RNATVTVCHSKTKNL-------------------   81 (168)
T ss_pred             ccCChHHHHHHHHHHcCCCCCCCEEEEEC-CcHHHHHHHHHHHhh-CCCEEEEEECCchhH-------------------
Confidence            3455444444444433 345789999999 565 69988888877 599877777653222                   


Q ss_pred             ccCCCCccEEEecCccHH-HHHHhcccCCeEEEEcCCC
Q 016265          291 EDLPEKFDVVYDAIGQCD-RAVKAIKEGGTVVALTGAV  327 (392)
Q Consensus       291 ~~~~~~~D~vid~~G~~~-~~~~~l~~~G~iv~~g~~~  327 (392)
                      .+....+|+||.++|..+ --.+.++++-.++.++.+.
T Consensus        82 ~~~l~~aDiVIsat~~~~ii~~~~~~~~~viIDla~pr  119 (168)
T cd01080          82 KEHTKQADIVIVAVGKPGLVKGDMVKPGAVVIDVGINR  119 (168)
T ss_pred             HHHHhhCCEEEEcCCCCceecHHHccCCeEEEEccCCC
Confidence            222346789999988421 1112356666666676544

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>PRK08226 short chain dehydrogenase; Provisional

Probab=93.83  E-value=0.29  Score=45.05  Aligned_cols=38  Identities=21%  Similarity=0.331  Sum_probs=31.6

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCccc
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRN  270 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~  270 (392)
                      .+.+++|+||+|++|...+..+.. .|++|+++.++++.
T Consensus         5 ~~~~~lItG~s~giG~~la~~l~~-~G~~Vv~~~r~~~~   42 (263)
T PRK08226          5 TGKTALITGALQGIGEGIARVFAR-HGANLILLDISPEI   42 (263)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHH-CCCEEEEecCCHHH
Confidence            468999999999999998887766 59998888876643

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=93.83  E-value=0.35  Score=41.37  Aligned_cols=85  Identities=20%  Similarity=0.289  Sum_probs=53.7

Q ss_pred             CeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCCccccCCCCccEEEecCcc---HHH-
Q 016265          234 KSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFEDLPEKFDVVYDAIGQ---CDR-  309 (392)
Q Consensus       234 ~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~~~~~~~D~vid~~G~---~~~-  309 (392)
                      .+|.++| .|-+|...+.-+.. .|.++.+.++++++.+.+.+.|+..+ +    +..+..+..|+||-|+..   .+. 
T Consensus         2 ~~Ig~IG-lG~mG~~~a~~L~~-~g~~v~~~d~~~~~~~~~~~~g~~~~-~----s~~e~~~~~dvvi~~v~~~~~v~~v   74 (163)
T PF03446_consen    2 MKIGFIG-LGNMGSAMARNLAK-AGYEVTVYDRSPEKAEALAEAGAEVA-D----SPAEAAEQADVVILCVPDDDAVEAV   74 (163)
T ss_dssp             BEEEEE---SHHHHHHHHHHHH-TTTEEEEEESSHHHHHHHHHTTEEEE-S----SHHHHHHHBSEEEE-SSSHHHHHHH
T ss_pred             CEEEEEc-hHHHHHHHHHHHHh-cCCeEEeeccchhhhhhhHHhhhhhh-h----hhhhHhhcccceEeecccchhhhhh
Confidence            3688998 99999887776665 49999999999999988888774322 1    223333456888888763   222 


Q ss_pred             -----HHHhcccCCeEEEEcC
Q 016265          310 -----AVKAIKEGGTVVALTG  325 (392)
Q Consensus       310 -----~~~~l~~~G~iv~~g~  325 (392)
                           .+..+.+|..++.++.
T Consensus        75 ~~~~~i~~~l~~g~iiid~sT   95 (163)
T PF03446_consen   75 LFGENILAGLRPGKIIIDMST   95 (163)
T ss_dssp             HHCTTHGGGS-TTEEEEE-SS
T ss_pred             hhhhHHhhccccceEEEecCC
Confidence                 3444555556665543

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>PRK12743 oxidoreductase; Provisional

Probab=93.82  E-value=0.32  Score=44.60  Aligned_cols=72  Identities=17%  Similarity=0.166  Sum_probs=45.4

Q ss_pred             CCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeC-CcccHHH----HHhcCCcE-EE--eCCCCc-c----cc---CCCC
Q 016265          233 GKSILVLNGSGGVGSLVIQLAKQVFGASRVAATS-STRNLEF----LKSLGADL-AI--DYTKDN-F----ED---LPEK  296 (392)
Q Consensus       233 g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~-~~~~~~~----~~~~G~~~-vi--~~~~~~-~----~~---~~~~  296 (392)
                      +++|+|+||+|++|...++.+.. .|++|+++.+ +.++.+.    ++..|... .+  |..+.. .    .+   ....
T Consensus         2 ~k~vlItGas~giG~~~a~~l~~-~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~   80 (256)
T PRK12743          2 AQVAIVTASDSGIGKACALLLAQ-QGFDIGITWHSDEEGAKETAEEVRSHGVRAEIRQLDLSDLPEGAQALDKLIQRLGR   80 (256)
T ss_pred             CCEEEEECCCchHHHHHHHHHHH-CCCEEEEEeCCChHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            56899999999999998888777 5999988765 3333322    23445332 22  332211 1    11   1236


Q ss_pred             ccEEEecCc
Q 016265          297 FDVVYDAIG  305 (392)
Q Consensus       297 ~D~vid~~G  305 (392)
                      +|++|.+.|
T Consensus        81 id~li~~ag   89 (256)
T PRK12743         81 IDVLVNNAG   89 (256)
T ss_pred             CCEEEECCC
Confidence            899998876

>PRK06124 gluconate 5-dehydrogenase; Provisional

Probab=93.82  E-value=0.33  Score=44.46  Aligned_cols=73  Identities=21%  Similarity=0.348  Sum_probs=47.7

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHH----HhcCCc-EEE--eCCCCc-ccc-------CCCC
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFL----KSLGAD-LAI--DYTKDN-FED-------LPEK  296 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~----~~~G~~-~vi--~~~~~~-~~~-------~~~~  296 (392)
                      .|.+++|+||+|++|...+..... .|++++++.+++++++.+    ++.|.. ..+  |..+.. +..       ..+.
T Consensus        10 ~~k~ilItGas~~IG~~la~~l~~-~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~   88 (256)
T PRK06124         10 AGQVALVTGSARGLGFEIARALAG-AGAHVLVNGRNAATLEAAVAALRAAGGAAEALAFDIADEEAVAAAFARIDAEHGR   88 (256)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHH-cCCeEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHhcCC
Confidence            578999999999999988876655 499999998877654433    233422 122  332211 111       1246


Q ss_pred             ccEEEecCc
Q 016265          297 FDVVYDAIG  305 (392)
Q Consensus       297 ~D~vid~~G  305 (392)
                      +|++|.+.|
T Consensus        89 id~vi~~ag   97 (256)
T PRK06124         89 LDILVNNVG   97 (256)
T ss_pred             CCEEEECCC
Confidence            899998877

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.82  E-value=0.28  Score=49.78  Aligned_cols=69  Identities=23%  Similarity=0.296  Sum_probs=49.1

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcc-----cHHHHHhcCCcEEEeCCCCccccCCCCccEEEecCc
Q 016265          231 SAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTR-----NLEFLKSLGADLAIDYTKDNFEDLPEKFDVVYDAIG  305 (392)
Q Consensus       231 ~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~-----~~~~~~~~G~~~vi~~~~~~~~~~~~~~D~vid~~G  305 (392)
                      ..+++|+|+| .|++|+.++.+++. .|.+|++++..+.     ..+.+++.|.....+....    ...++|+|+.+.|
T Consensus        14 ~~~~~v~viG-~G~~G~~~A~~L~~-~G~~V~~~d~~~~~~~~~~~~~l~~~gv~~~~~~~~~----~~~~~D~Vv~s~G   87 (480)
T PRK01438         14 WQGLRVVVAG-LGVSGFAAADALLE-LGARVTVVDDGDDERHRALAAILEALGATVRLGPGPT----LPEDTDLVVTSPG   87 (480)
T ss_pred             cCCCEEEEEC-CCHHHHHHHHHHHH-CCCEEEEEeCCchhhhHHHHHHHHHcCCEEEECCCcc----ccCCCCEEEECCC
Confidence            3577999998 89999999999888 5999888875542     2244667787654432221    2346899998887

>PRK07791 short chain dehydrogenase; Provisional

Probab=93.81  E-value=0.32  Score=45.65  Aligned_cols=37  Identities=22%  Similarity=0.298  Sum_probs=29.9

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCc
Q 016265          231 SAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSST  268 (392)
Q Consensus       231 ~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~  268 (392)
                      -.|.+++|+||++++|.+.++.+.. .|+++++++++.
T Consensus         4 l~~k~~lITGas~GIG~aia~~la~-~G~~vii~~~~~   40 (286)
T PRK07791          4 LDGRVVIVTGAGGGIGRAHALAFAA-EGARVVVNDIGV   40 (286)
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHH-CCCEEEEeeCCc
Confidence            4578999999999999987776655 499998887643

>TIGR00537 hemK_rel_arch HemK-related putative methylase

Probab=93.79  E-value=0.64  Score=40.34  Aligned_cols=89  Identities=20%  Similarity=0.257  Sum_probs=54.8

Q ss_pred             CCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHh----cCCc-EEEeCCCCccccCCCCccEEEecC
Q 016265          230 FSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKS----LGAD-LAIDYTKDNFEDLPEKFDVVYDAI  304 (392)
Q Consensus       230 ~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~----~G~~-~vi~~~~~~~~~~~~~~D~vid~~  304 (392)
                      ..++++||=+|  .|.|..+..+++.  +.+++.++.+++..+.+++    .+.. .++..+.  .....+.+|+|+-..
T Consensus        17 ~~~~~~vLdlG--~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~--~~~~~~~fD~Vi~n~   90 (179)
T TIGR00537        17 ELKPDDVLEIG--AGTGLVAIRLKGK--GKCILTTDINPFAVKELRENAKLNNVGLDVVMTDL--FKGVRGKFDVILFNP   90 (179)
T ss_pred             hcCCCeEEEeC--CChhHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHHcCCceEEEEccc--ccccCCcccEEEECC
Confidence            45567888886  4567778888864  5578888888887776654    3322 1222111  111234689888542


Q ss_pred             c------------------------------cHHHHHHhcccCCeEEEEc
Q 016265          305 G------------------------------QCDRAVKAIKEGGTVVALT  324 (392)
Q Consensus       305 G------------------------------~~~~~~~~l~~~G~iv~~g  324 (392)
                      .                              -+..+.+.|++||+++.+.
T Consensus        91 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~  140 (179)
T TIGR00537        91 PYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQ  140 (179)
T ss_pred             CCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEE
Confidence            1                              0356667899999987663

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.

>PRK07074 short chain dehydrogenase; Provisional

Probab=93.78  E-value=0.3  Score=44.74  Aligned_cols=41  Identities=20%  Similarity=0.285  Sum_probs=33.2

Q ss_pred             CCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHH
Q 016265          233 GKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFL  274 (392)
Q Consensus       233 g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~  274 (392)
                      +.+++|+||+|++|...+..+.. .|+++++++++.++.+.+
T Consensus         2 ~k~ilItGat~~iG~~la~~L~~-~g~~v~~~~r~~~~~~~~   42 (257)
T PRK07074          2 KRTALVTGAAGGIGQALARRFLA-AGDRVLALDIDAAALAAF   42 (257)
T ss_pred             CCEEEEECCcchHHHHHHHHHHH-CCCEEEEEeCCHHHHHHH
Confidence            46899999999999998776666 499999998877766544

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=93.77  E-value=0.68  Score=41.23  Aligned_cols=90  Identities=16%  Similarity=0.123  Sum_probs=51.5

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCc-ccHHHHHhcCCcEEEeCCCCccccCCCCccEEEecCcc--HH
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSST-RNLEFLKSLGADLAIDYTKDNFEDLPEKFDVVYDAIGQ--CD  308 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~-~~~~~~~~~G~~~vi~~~~~~~~~~~~~~D~vid~~G~--~~  308 (392)
                      .|.+|+|.| +|.+|...+..+.. .|++++++.... +.+..+.+.|. ..+...... .....++|+||-|++.  ++
T Consensus         9 ~~k~vLVIG-gG~va~~ka~~Ll~-~ga~V~VIs~~~~~~l~~l~~~~~-i~~~~~~~~-~~~l~~adlViaaT~d~elN   84 (202)
T PRK06718          9 SNKRVVIVG-GGKVAGRRAITLLK-YGAHIVVISPELTENLVKLVEEGK-IRWKQKEFE-PSDIVDAFLVIAATNDPRVN   84 (202)
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHH-CCCeEEEEcCCCCHHHHHHHhCCC-EEEEecCCC-hhhcCCceEEEEcCCCHHHH
Confidence            578999998 89999988776666 488888776432 12222222221 112211111 1123578999999984  44


Q ss_pred             HHHHhcccCCeEEEEcC
Q 016265          309 RAVKAIKEGGTVVALTG  325 (392)
Q Consensus       309 ~~~~~l~~~G~iv~~g~  325 (392)
                      ..+...+..+.++....
T Consensus        85 ~~i~~~a~~~~lvn~~d  101 (202)
T PRK06718         85 EQVKEDLPENALFNVIT  101 (202)
T ss_pred             HHHHHHHHhCCcEEECC
Confidence            44444444456665543

>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=93.76  E-value=0.38  Score=45.42  Aligned_cols=93  Identities=25%  Similarity=0.202  Sum_probs=64.3

Q ss_pred             ccchhHHHHHHHHHhcCC-CCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCCccc
Q 016265          213 GLPLAIETAYEGLERTGF-SAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFE  291 (392)
Q Consensus       213 ~l~~~~~ta~~al~~~~~-~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~  291 (392)
                      .+||+......-|+..++ -.|.+|+|+|.++-+|.-.+.++.. .|+.|.+..+...                   +..
T Consensus       138 ~~PcTp~aii~lL~~~~i~l~Gk~V~vIG~s~ivG~PmA~~L~~-~gatVtv~~~~t~-------------------~l~  197 (301)
T PRK14194        138 LTPCTPSGCLRLLEDTCGDLTGKHAVVIGRSNIVGKPMAALLLQ-AHCSVTVVHSRST-------------------DAK  197 (301)
T ss_pred             CCCCcHHHHHHHHHHhCCCCCCCEEEEECCCCccHHHHHHHHHH-CCCEEEEECCCCC-------------------CHH
Confidence            456665555556666554 4699999999667999988888877 4998888755332                   223


Q ss_pred             cCCCCccEEEecCccH---HHHHHhcccCCeEEEEcCCC
Q 016265          292 DLPEKFDVVYDAIGQC---DRAVKAIKEGGTVVALTGAV  327 (392)
Q Consensus       292 ~~~~~~D~vid~~G~~---~~~~~~l~~~G~iv~~g~~~  327 (392)
                      +..+..|+||-++|..   ...  .+++|..++.+|...
T Consensus       198 e~~~~ADIVIsavg~~~~v~~~--~ik~GaiVIDvgin~  234 (301)
T PRK14194        198 ALCRQADIVVAAVGRPRLIDAD--WLKPGAVVIDVGINR  234 (301)
T ss_pred             HHHhcCCEEEEecCChhcccHh--hccCCcEEEEecccc
Confidence            3334679999999842   222  388999999887543

>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase

Probab=93.76  E-value=0.3  Score=51.85  Aligned_cols=42  Identities=26%  Similarity=0.304  Sum_probs=34.5

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHH
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFL  274 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~  274 (392)
                      .|.+|||+||+|++|...++.... .|++|++++++.++.+.+
T Consensus       413 ~gkvvLVTGasggIG~aiA~~La~-~Ga~Vvi~~r~~~~~~~~  454 (676)
T TIGR02632       413 ARRVAFVTGGAGGIGRETARRLAA-EGAHVVLADLNLEAAEAV  454 (676)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHh-CCCEEEEEeCCHHHHHHH
Confidence            478999999999999998877766 499999998877665443

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=93.73  E-value=0.39  Score=48.70  Aligned_cols=96  Identities=20%  Similarity=0.328  Sum_probs=62.7

Q ss_pred             HhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhc--CCcEEEeCCCCcccc--C-CCCccEE
Q 016265          226 ERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSL--GADLAIDYTKDNFED--L-PEKFDVV  300 (392)
Q Consensus       226 ~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~--G~~~vi~~~~~~~~~--~-~~~~D~v  300 (392)
                      +...++++++||=+| +|. |..+..+++. .+++++.++.+++.++.+++.  +...-+.....++..  . .+.||+|
T Consensus       260 ~~~~~~~~~~vLDiG-cG~-G~~~~~la~~-~~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I  336 (475)
T PLN02336        260 DKLDLKPGQKVLDVG-CGI-GGGDFYMAEN-FDVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKTYPDNSFDVI  336 (475)
T ss_pred             HhcCCCCCCEEEEEe-ccC-CHHHHHHHHh-cCCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCCCCCCCEEEE
Confidence            345567889999997 554 7778888887 489999999998877777542  221111111111111  1 2469999


Q ss_pred             EecCc---------cHHHHHHhcccCCeEEEEc
Q 016265          301 YDAIG---------QCDRAVKAIKEGGTVVALT  324 (392)
Q Consensus       301 id~~G---------~~~~~~~~l~~~G~iv~~g  324 (392)
                      +..-.         .+..+.+.|+|||+++...
T Consensus       337 ~s~~~l~h~~d~~~~l~~~~r~LkpgG~l~i~~  369 (475)
T PLN02336        337 YSRDTILHIQDKPALFRSFFKWLKPGGKVLISD  369 (475)
T ss_pred             EECCcccccCCHHHHHHHHHHHcCCCeEEEEEE
Confidence            86421         1478889999999988653

>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional

Probab=93.72  E-value=0.34  Score=44.95  Aligned_cols=35  Identities=23%  Similarity=0.221  Sum_probs=27.3

Q ss_pred             CCCeEEEEcCCC--cHHHHHHHHHHHhcCCeEEEEeCC
Q 016265          232 AGKSILVLNGSG--GVGSLVIQLAKQVFGASRVAATSS  267 (392)
Q Consensus       232 ~g~~VlI~Ga~G--~vG~~aiqlak~~~G~~vv~~~~~  267 (392)
                      .|.+++|+||++  ++|.+.++.... .|++++++.++
T Consensus         5 ~~k~~lITGas~~~GIG~aia~~la~-~G~~vil~~r~   41 (262)
T PRK07984          5 SGKRILVTGVASKLSIAYGIAQAMHR-EGAELAFTYQN   41 (262)
T ss_pred             CCCEEEEeCCCCCccHHHHHHHHHHH-CCCEEEEEecc
Confidence            478999999875  899986666555 49998887765

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=93.72  E-value=0.35  Score=44.62  Aligned_cols=89  Identities=18%  Similarity=0.244  Sum_probs=59.9

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHh----cCCc---EEEeCCCCccc-cCCCCccEEEe
Q 016265          231 SAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKS----LGAD---LAIDYTKDNFE-DLPEKFDVVYD  302 (392)
Q Consensus       231 ~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~----~G~~---~vi~~~~~~~~-~~~~~~D~vid  302 (392)
                      ..+.+||=+|  +|.|..+..+++.  |.+++.++.+++.++.+++    .|..   .++..+-.++. ...+.||+|+.
T Consensus        43 ~~~~~vLDiG--cG~G~~a~~la~~--g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~  118 (255)
T PRK11036         43 PRPLRVLDAG--GGEGQTAIKLAEL--GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILF  118 (255)
T ss_pred             CCCCEEEEeC--CCchHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEe
Confidence            4567888886  5668899999974  8899999999988877754    3322   12222222222 12457999985


Q ss_pred             cCc---------cHHHHHHhcccCCeEEEE
Q 016265          303 AIG---------QCDRAVKAIKEGGTVVAL  323 (392)
Q Consensus       303 ~~G---------~~~~~~~~l~~~G~iv~~  323 (392)
                      ...         .+..+.+.|+|||+++.+
T Consensus       119 ~~vl~~~~~~~~~l~~~~~~LkpgG~l~i~  148 (255)
T PRK11036        119 HAVLEWVADPKSVLQTLWSVLRPGGALSLM  148 (255)
T ss_pred             hhHHHhhCCHHHHHHHHHHHcCCCeEEEEE
Confidence            422         157888999999999765

>PLN02214 cinnamoyl-CoA reductase

Probab=93.72  E-value=0.44  Score=46.03  Aligned_cols=74  Identities=16%  Similarity=0.297  Sum_probs=47.0

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHH--HHHhcC---Cc-EEE--eCCC-CccccCCCCccEEE
Q 016265          231 SAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLE--FLKSLG---AD-LAI--DYTK-DNFEDLPEKFDVVY  301 (392)
Q Consensus       231 ~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~--~~~~~G---~~-~vi--~~~~-~~~~~~~~~~D~vi  301 (392)
                      ..+.+|+|+||+|.+|...+..+.. .|.+|++++++.++..  .++.+.   .. .++  |..+ ..+.+..+++|+||
T Consensus         8 ~~~~~vlVTGatGfIG~~l~~~L~~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~Vi   86 (342)
T PLN02214          8 PAGKTVCVTGAGGYIASWIVKILLE-RGYTVKGTVRNPDDPKNTHLRELEGGKERLILCKADLQDYEALKAAIDGCDGVF   86 (342)
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHH-CcCEEEEEeCCchhhhHHHHHHhhCCCCcEEEEecCcCChHHHHHHHhcCCEEE
Confidence            3577999999999999998887766 4999998887655321  122221   11 122  2222 12233345799999


Q ss_pred             ecCc
Q 016265          302 DAIG  305 (392)
Q Consensus       302 d~~G  305 (392)
                      .+.+
T Consensus        87 h~A~   90 (342)
T PLN02214         87 HTAS   90 (342)
T ss_pred             EecC
Confidence            9876

>PRK13256 thiopurine S-methyltransferase; Reviewed

Probab=93.71  E-value=1.2  Score=40.29  Aligned_cols=94  Identities=13%  Similarity=0.143  Sum_probs=61.4

Q ss_pred             cCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHh-cCCcEE--------------EeCCCCcccc
Q 016265          228 TGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKS-LGADLA--------------IDYTKDNFED  292 (392)
Q Consensus       228 ~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~-~G~~~v--------------i~~~~~~~~~  292 (392)
                      ....+|.+|||-| + |-|.=++.||.+  |.+|+.++-++.-.+.+.+ .+....              ++.-..++-+
T Consensus        39 l~~~~~~rvLvPg-C-Gkg~D~~~LA~~--G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~  114 (226)
T PRK13256         39 LNINDSSVCLIPM-C-GCSIDMLFFLSK--GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFN  114 (226)
T ss_pred             cCCCCCCeEEEeC-C-CChHHHHHHHhC--CCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcC
Confidence            3445678999997 4 458888989974  9999999998887776533 221110              1111111111


Q ss_pred             C------CCCccEEEecCc--c---------HHHHHHhcccCCeEEEEcC
Q 016265          293 L------PEKFDVVYDAIG--Q---------CDRAVKAIKEGGTVVALTG  325 (392)
Q Consensus       293 ~------~~~~D~vid~~G--~---------~~~~~~~l~~~G~iv~~g~  325 (392)
                      .      .+.||.|+|..-  .         .+.+.++|++||+++.+..
T Consensus       115 l~~~~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~  164 (226)
T PRK13256        115 LPKIANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVM  164 (226)
T ss_pred             CCccccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEE
Confidence            1      246999999754  1         3678888999999887743

>PRK06484 short chain dehydrogenase; Validated

Probab=93.70  E-value=0.23  Score=50.88  Aligned_cols=73  Identities=25%  Similarity=0.374  Sum_probs=50.4

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHH-HhcCCcE---EEeCCCCc-ccc-------CCCCccE
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFL-KSLGADL---AIDYTKDN-FED-------LPEKFDV  299 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~-~~~G~~~---vi~~~~~~-~~~-------~~~~~D~  299 (392)
                      .|.+++|+||++++|.+.++.+.. .|++|+++.++.++++.+ +++|...   .+|..+.. +.+       ..+++|+
T Consensus         4 ~~k~~lITGas~gIG~aia~~l~~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~iD~   82 (520)
T PRK06484          4 QSRVVLVTGAAGGIGRAACQRFAR-AGDQVVVADRNVERARERADSLGPDHHALAMDVSDEAQIREGFEQLHREFGRIDV   82 (520)
T ss_pred             CCeEEEEECCCcHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHHhCCceeEEEeccCCHHHHHHHHHHHHHHhCCCCE
Confidence            578999999999999998887766 499999998887776554 4555432   23333221 111       1246899


Q ss_pred             EEecCc
Q 016265          300 VYDAIG  305 (392)
Q Consensus       300 vid~~G  305 (392)
                      +|++.|
T Consensus        83 li~nag   88 (520)
T PRK06484         83 LVNNAG   88 (520)
T ss_pred             EEECCC
Confidence            998865

>PRK07402 precorrin-6B methylase; Provisional

Probab=93.69  E-value=0.87  Score=40.15  Aligned_cols=96  Identities=13%  Similarity=0.207  Sum_probs=59.1

Q ss_pred             HhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHH----hcCCcE--EEeCCCCc-cccCCCCcc
Q 016265          226 ERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLK----SLGADL--AIDYTKDN-FEDLPEKFD  298 (392)
Q Consensus       226 ~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~----~~G~~~--vi~~~~~~-~~~~~~~~D  298 (392)
                      ....++++++||=.|  .|.|..++.+++...+.+++.++.+++..+.++    ++|.+.  ++..+... +......+|
T Consensus        34 ~~l~~~~~~~VLDiG--~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~d  111 (196)
T PRK07402         34 SQLRLEPDSVLWDIG--AGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAPAPD  111 (196)
T ss_pred             HhcCCCCCCEEEEeC--CCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCCCCCC
Confidence            455778899888776  345667777776533578899999888777664    355432  22222111 122222344


Q ss_pred             E-EEecCcc----HHHHHHhcccCCeEEEE
Q 016265          299 V-VYDAIGQ----CDRAVKAIKEGGTVVAL  323 (392)
Q Consensus       299 ~-vid~~G~----~~~~~~~l~~~G~iv~~  323 (392)
                      . +++....    ++.+.+.|++||+++..
T Consensus       112 ~v~~~~~~~~~~~l~~~~~~LkpgG~li~~  141 (196)
T PRK07402        112 RVCIEGGRPIKEILQAVWQYLKPGGRLVAT  141 (196)
T ss_pred             EEEEECCcCHHHHHHHHHHhcCCCeEEEEE
Confidence            4 4443222    47888899999998766

>PRK14901 16S rRNA methyltransferase B; Provisional

Probab=93.66  E-value=1.1  Score=44.87  Aligned_cols=96  Identities=23%  Similarity=0.240  Sum_probs=59.7

Q ss_pred             hcCCCCCCeEEEEcCCCcHHHHHHHHHHHhc-CCeEEEEeCCcccHHHH----HhcCCcE--EEeCCCCccc----cCCC
Q 016265          227 RTGFSAGKSILVLNGSGGVGSLVIQLAKQVF-GASRVAATSSTRNLEFL----KSLGADL--AIDYTKDNFE----DLPE  295 (392)
Q Consensus       227 ~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~-G~~vv~~~~~~~~~~~~----~~~G~~~--vi~~~~~~~~----~~~~  295 (392)
                      ...+++|++||=.| +| .|..+..+++.+. ..++++++.++++++.+    +.+|.+.  ++..+...+.    ...+
T Consensus       247 ~l~~~~g~~VLDl~-ag-~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~  324 (434)
T PRK14901        247 LLDPQPGEVILDAC-AA-PGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQWRG  324 (434)
T ss_pred             HhCCCCcCEEEEeC-CC-CchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccccccc
Confidence            34678899887775 33 3555566666542 24788888898888766    4467653  2222222222    1134


Q ss_pred             CccEEE-e--cCc--c--------------------------HHHHHHhcccCCeEEEEc
Q 016265          296 KFDVVY-D--AIG--Q--------------------------CDRAVKAIKEGGTVVALT  324 (392)
Q Consensus       296 ~~D~vi-d--~~G--~--------------------------~~~~~~~l~~~G~iv~~g  324 (392)
                      .||.|+ |  |+|  .                          ++.+++.|++||++|...
T Consensus       325 ~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvyst  384 (434)
T PRK14901        325 YFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYAT  384 (434)
T ss_pred             cCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence            699887 4  444  1                          356788999999998653

>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional

Probab=93.65  E-value=0.22  Score=47.85  Aligned_cols=84  Identities=14%  Similarity=0.164  Sum_probs=58.8

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHH-HhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCCccccCCCCccEEEecCcc----
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAK-QVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFEDLPEKFDVVYDAIGQ----  306 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak-~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~~~~~~~D~vid~~G~----  306 (392)
                      .|.+|.|+| .|.+|...++.++ . +|.+|++.++... .+....+|...      .++.++-+..|+|+-++..    
T Consensus       144 ~gktvGIiG-~G~IG~~va~~l~~~-fgm~V~~~~~~~~-~~~~~~~~~~~------~~l~ell~~sDvv~lh~plt~~T  214 (323)
T PRK15409        144 HHKTLGIVG-MGRIGMALAQRAHFG-FNMPILYNARRHH-KEAEERFNARY------CDLDTLLQESDFVCIILPLTDET  214 (323)
T ss_pred             CCCEEEEEc-ccHHHHHHHHHHHhc-CCCEEEEECCCCc-hhhHHhcCcEe------cCHHHHHHhCCEEEEeCCCChHH
Confidence            578999998 9999999999998 6 7999887776432 22223444321      1344555677988877651    


Q ss_pred             ---H-HHHHHhcccCCeEEEEc
Q 016265          307 ---C-DRAVKAIKEGGTVVALT  324 (392)
Q Consensus       307 ---~-~~~~~~l~~~G~iv~~g  324 (392)
                         + ...++.|+++..+|.++
T Consensus       215 ~~li~~~~l~~mk~ga~lIN~a  236 (323)
T PRK15409        215 HHLFGAEQFAKMKSSAIFINAG  236 (323)
T ss_pred             hhccCHHHHhcCCCCeEEEECC
Confidence               1 56888899988888664

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=93.65  E-value=0.42  Score=44.84  Aligned_cols=84  Identities=14%  Similarity=0.132  Sum_probs=54.9

Q ss_pred             eEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCCccccCCCCccEEEecCcc------HH
Q 016265          235 SILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFEDLPEKFDVVYDAIGQ------CD  308 (392)
Q Consensus       235 ~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~~~~~~~D~vid~~G~------~~  308 (392)
                      +|.|+| .|.+|...+..++. .|.+|++.++++++.+.+.+.|.....   ..+. +..+.+|+||.|+..      ++
T Consensus         2 ~I~IIG-~G~mG~sla~~L~~-~g~~V~~~d~~~~~~~~a~~~g~~~~~---~~~~-~~~~~aDlVilavp~~~~~~~~~   75 (279)
T PRK07417          2 KIGIVG-LGLIGGSLGLDLRS-LGHTVYGVSRRESTCERAIERGLVDEA---STDL-SLLKDCDLVILALPIGLLLPPSE   75 (279)
T ss_pred             eEEEEe-ecHHHHHHHHHHHH-CCCEEEEEECCHHHHHHHHHCCCcccc---cCCH-hHhcCCCEEEEcCCHHHHHHHHH
Confidence            588998 99999877776666 488899999988888888877742211   1111 123578999999872      23


Q ss_pred             HHHHhcccCCeEEEEc
Q 016265          309 RAVKAIKEGGTVVALT  324 (392)
Q Consensus       309 ~~~~~l~~~G~iv~~g  324 (392)
                      .....++++-.+..++
T Consensus        76 ~l~~~l~~~~ii~d~~   91 (279)
T PRK07417         76 QLIPALPPEAIVTDVG   91 (279)
T ss_pred             HHHHhCCCCcEEEeCc
Confidence            3444455554444433

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=93.65  E-value=0.55  Score=44.35  Aligned_cols=86  Identities=24%  Similarity=0.297  Sum_probs=54.6

Q ss_pred             eEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcE---EEe---CCCCccccCCCCccEEEecCc--c
Q 016265          235 SILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADL---AID---YTKDNFEDLPEKFDVVYDAIG--Q  306 (392)
Q Consensus       235 ~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~---vi~---~~~~~~~~~~~~~D~vid~~G--~  306 (392)
                      +|+|+| +|.+|.+.+..+.. .|.+|.++++++++.+.+++.|...   ...   ....+..+. +.+|+||-|+.  .
T Consensus         2 ~I~IiG-~G~~G~~~a~~L~~-~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~d~vila~k~~~   78 (304)
T PRK06522          2 KIAILG-AGAIGGLFGAALAQ-AGHDVTLVARRGAHLDALNENGLRLEDGEITVPVLAADDPAEL-GPQDLVILAVKAYQ   78 (304)
T ss_pred             EEEEEC-CCHHHHHHHHHHHh-CCCeEEEEECChHHHHHHHHcCCcccCCceeecccCCCChhHc-CCCCEEEEeccccc
Confidence            589998 89999987776666 4888999988777777777666421   000   001112222 67999999976  3


Q ss_pred             HHHHHHhcc----cCCeEEEE
Q 016265          307 CDRAVKAIK----EGGTVVAL  323 (392)
Q Consensus       307 ~~~~~~~l~----~~G~iv~~  323 (392)
                      .+.+++.++    ++..++.+
T Consensus        79 ~~~~~~~l~~~l~~~~~iv~~   99 (304)
T PRK06522         79 LPAALPSLAPLLGPDTPVLFL   99 (304)
T ss_pred             HHHHHHHHhhhcCCCCEEEEe
Confidence            444444443    44456654

>PLN02780 ketoreductase/ oxidoreductase

Probab=93.64  E-value=0.13  Score=49.24  Aligned_cols=42  Identities=19%  Similarity=0.172  Sum_probs=34.7

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHH
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFL  274 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~  274 (392)
                      .|.+++|+||++++|...+..... .|++++++.+++++++.+
T Consensus        52 ~g~~~lITGAs~GIG~alA~~La~-~G~~Vil~~R~~~~l~~~   93 (320)
T PLN02780         52 YGSWALVTGPTDGIGKGFAFQLAR-KGLNLVLVARNPDKLKDV   93 (320)
T ss_pred             cCCEEEEeCCCcHHHHHHHHHHHH-CCCCEEEEECCHHHHHHH
Confidence            589999999999999887665545 499999999988877654

>PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms []

Probab=93.64  E-value=0.38  Score=39.49  Aligned_cols=85  Identities=20%  Similarity=0.402  Sum_probs=55.1

Q ss_pred             EEEEcCCCcHHHHHHHHHHHhcC--CeEEEEeC--Cccc-HHHHHhcCCcEEEeCCCCcccc------------------
Q 016265          236 ILVLNGSGGVGSLVIQLAKQVFG--ASRVAATS--STRN-LEFLKSLGADLAIDYTKDNFED------------------  292 (392)
Q Consensus       236 VlI~Ga~G~vG~~aiqlak~~~G--~~vv~~~~--~~~~-~~~~~~~G~~~vi~~~~~~~~~------------------  292 (392)
                      |.|+|++|.||..+..+.+. +.  .+++....  +-++ .+.+++|....++-.++.....                  
T Consensus         1 i~ILGsTGSIG~qtLdVi~~-~~d~f~v~~Lsa~~n~~~L~~q~~~f~p~~v~i~~~~~~~~l~~~~~~~~~~~~v~~G~   79 (129)
T PF02670_consen    1 IAILGSTGSIGTQTLDVIRK-HPDKFEVVALSAGSNIEKLAEQAREFKPKYVVIADEEAYEELKKALPSKGPGIEVLSGP   79 (129)
T ss_dssp             EEEESTTSHHHHHHHHHHHH-CTTTEEEEEEEESSTHHHHHHHHHHHT-SEEEESSHHHHHHHHHHHHHTTSSSEEEESH
T ss_pred             CEEEcCCcHHHHHHHHHHHh-CCCceEEEEEEcCCCHHHHHHHHHHhCCCEEEEcCHHHHHHHHHHhhhcCCCCEEEeCh
Confidence            68999999999999999998 46  56766553  3333 3455778887776554432111                  


Q ss_pred             -----C--CCCccEEEec-Cc--cHHHHHHhcccCCeEE
Q 016265          293 -----L--PEKFDVVYDA-IG--QCDRAVKAIKEGGTVV  321 (392)
Q Consensus       293 -----~--~~~~D~vid~-~G--~~~~~~~~l~~~G~iv  321 (392)
                           .  ...+|+|+.+ +|  .+.-.+.+++.|=++.
T Consensus        80 ~~l~~~~~~~~~D~vv~Ai~G~aGL~pt~~Ai~~gk~ia  118 (129)
T PF02670_consen   80 EGLEELAEEPEVDIVVNAIVGFAGLKPTLAAIKAGKDIA  118 (129)
T ss_dssp             HHHHHHHTHTT-SEEEE--SSGGGHHHHHHHHHTTSEEE
T ss_pred             HHHHHHhcCCCCCEEEEeCcccchHHHHHHHHHCCCeEE
Confidence                 0  1368999998 46  5677788888765543

In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A ....

>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

Probab=93.63  E-value=0.34  Score=43.74  Aligned_cols=73  Identities=23%  Similarity=0.331  Sum_probs=47.8

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHH----HhcCCcEE---EeCCCCc-ccc-------CCCC
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFL----KSLGADLA---IDYTKDN-FED-------LPEK  296 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~----~~~G~~~v---i~~~~~~-~~~-------~~~~  296 (392)
                      ++.+|||+||+|++|...+..... .|.+++++.+++++.+.+    +..+....   .|..+.. +.+       .-..
T Consensus         4 ~~~~ilItGasg~iG~~l~~~l~~-~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   82 (246)
T PRK05653          4 QGKTALVTGASRGIGRAIALRLAA-DGAKVVIYDSNEEAAEALAAELRAAGGEARVLVFDVSDEAAVRALIEAAVEAFGA   82 (246)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHH-CCCEEEEEeCChhHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence            357899999999999998887766 599988888887765433    33443322   2332221 111       1235


Q ss_pred             ccEEEecCc
Q 016265          297 FDVVYDAIG  305 (392)
Q Consensus       297 ~D~vid~~G  305 (392)
                      +|.+|.+.|
T Consensus        83 id~vi~~ag   91 (246)
T PRK05653         83 LDILVNNAG   91 (246)
T ss_pred             CCEEEECCC
Confidence            799999875

>PRK07102 short chain dehydrogenase; Provisional

Probab=93.59  E-value=0.29  Score=44.47  Aligned_cols=39  Identities=21%  Similarity=0.244  Sum_probs=32.4

Q ss_pred             CeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHH
Q 016265          234 KSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEF  273 (392)
Q Consensus       234 ~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~  273 (392)
                      .+++|+||+|++|...++.+.. .|++|+++++++++.+.
T Consensus         2 ~~vlItGas~giG~~~a~~l~~-~G~~Vi~~~r~~~~~~~   40 (243)
T PRK07102          2 KKILIIGATSDIARACARRYAA-AGARLYLAARDVERLER   40 (243)
T ss_pred             cEEEEEcCCcHHHHHHHHHHHh-cCCEEEEEeCCHHHHHH
Confidence            4799999999999998887766 49999999887766543

>PRK10901 16S rRNA methyltransferase B; Provisional

Probab=93.58  E-value=1.1  Score=44.74  Aligned_cols=97  Identities=21%  Similarity=0.187  Sum_probs=60.1

Q ss_pred             HhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHH----hcCCc-EEEeCCCCcccc--CCCCcc
Q 016265          226 ERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLK----SLGAD-LAIDYTKDNFED--LPEKFD  298 (392)
Q Consensus       226 ~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~----~~G~~-~vi~~~~~~~~~--~~~~~D  298 (392)
                      ...++++|++||=.| +| .|..+..+++...+.+++.++.++++++.++    ++|.. .++..+......  ..+.||
T Consensus       238 ~~l~~~~g~~VLDlg-aG-~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~fD  315 (427)
T PRK10901        238 TLLAPQNGERVLDAC-AA-PGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQPFD  315 (427)
T ss_pred             HHcCCCCCCEEEEeC-CC-CChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccCCCC
Confidence            345678999988886 33 3556667776642368889999998877764    45543 223222221111  124699


Q ss_pred             EEE-e--cCc----------------------------cHHHHHHhcccCCeEEEEc
Q 016265          299 VVY-D--AIG----------------------------QCDRAVKAIKEGGTVVALT  324 (392)
Q Consensus       299 ~vi-d--~~G----------------------------~~~~~~~~l~~~G~iv~~g  324 (392)
                      .|+ |  |+|                            -+..+.+.|+|||+++...
T Consensus       316 ~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvyst  372 (427)
T PRK10901        316 RILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYAT  372 (427)
T ss_pred             EEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence            887 2  332                            0356777899999998654

>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=93.56  E-value=0.46  Score=44.55  Aligned_cols=94  Identities=18%  Similarity=0.215  Sum_probs=66.1

Q ss_pred             ccchhHHHHHHHHHhcCCC-CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCCccc
Q 016265          213 GLPLAIETAYEGLERTGFS-AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFE  291 (392)
Q Consensus       213 ~l~~~~~ta~~al~~~~~~-~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~  291 (392)
                      ..||.....+..|+..++. .|.+|+|+|.+.-+|.-.+.++.. .|+.|.++......                   ..
T Consensus       143 ~~PcTp~av~~ll~~~~i~l~Gk~vvViGrs~iVGkPla~lL~~-~~atVtv~hs~T~~-------------------l~  202 (287)
T PRK14176        143 LVPCTPHGVIRALEEYGVDIEGKNAVIVGHSNVVGKPMAAMLLN-RNATVSVCHVFTDD-------------------LK  202 (287)
T ss_pred             CCCCcHHHHHHHHHHcCCCCCCCEEEEECCCcccHHHHHHHHHH-CCCEEEEEeccCCC-------------------HH
Confidence            4566665566667766654 799999999777799999999987 59988776643222                   22


Q ss_pred             cCCCCccEEEecCccHH-HHHHhcccCCeEEEEcCC
Q 016265          292 DLPEKFDVVYDAIGQCD-RAVKAIKEGGTVVALTGA  326 (392)
Q Consensus       292 ~~~~~~D~vid~~G~~~-~~~~~l~~~G~iv~~g~~  326 (392)
                      +..+.+|++|.++|... ---+.+++|..++.+|..
T Consensus       203 ~~~~~ADIvv~AvG~p~~i~~~~vk~gavVIDvGin  238 (287)
T PRK14176        203 KYTLDADILVVATGVKHLIKADMVKEGAVIFDVGIT  238 (287)
T ss_pred             HHHhhCCEEEEccCCccccCHHHcCCCcEEEEeccc
Confidence            33456799999998321 123478899888888764

>PRK06932 glycerate dehydrogenase; Provisional

Probab=93.54  E-value=0.21  Score=47.76  Aligned_cols=100  Identities=19%  Similarity=0.186  Sum_probs=67.1

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCCccccCCCCccEEEecCcc-----
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFEDLPEKFDVVYDAIGQ-----  306 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~~~~~~~D~vid~~G~-----  306 (392)
                      .|.+|.|+| .|.+|...+++++. +|++|++.++....     ...      ....++.++-...|+|+-+...     
T Consensus       146 ~gktvgIiG-~G~IG~~va~~l~~-fg~~V~~~~~~~~~-----~~~------~~~~~l~ell~~sDiv~l~~Plt~~T~  212 (314)
T PRK06932        146 RGSTLGVFG-KGCLGTEVGRLAQA-LGMKVLYAEHKGAS-----VCR------EGYTPFEEVLKQADIVTLHCPLTETTQ  212 (314)
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHhc-CCCEEEEECCCccc-----ccc------cccCCHHHHHHhCCEEEEcCCCChHHh
Confidence            478999998 99999999999998 79999887653211     000      0012344555578999887651     


Q ss_pred             --H-HHHHHhcccCCeEEEEcCCCCCCceEEEEeecHHHHHHHHHHHHCCCcc
Q 016265          307 --C-DRAVKAIKEGGTVVALTGAVTPPGFRFVVTSNGEVLKKLNPYLESGKVK  356 (392)
Q Consensus       307 --~-~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~l~  356 (392)
                        + ...++.|++|..+|.++-...            -+-+.+.+.+++|++.
T Consensus       213 ~li~~~~l~~mk~ga~lIN~aRG~~------------Vde~AL~~aL~~g~i~  253 (314)
T PRK06932        213 NLINAETLALMKPTAFLINTGRGPL------------VDEQALLDALENGKIA  253 (314)
T ss_pred             cccCHHHHHhCCCCeEEEECCCccc------------cCHHHHHHHHHcCCcc
Confidence              2 688899999999887753220            0124556667777765

>PRK12548 shikimate 5-dehydrogenase; Provisional

Probab=93.53  E-value=0.2  Score=47.29  Aligned_cols=73  Identities=15%  Similarity=0.173  Sum_probs=44.1

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHHHHhcCCe-EEEEeCCc---ccHHH-HHhcC---Cc---EEEeCCCC-ccccCCCCcc
Q 016265          231 SAGKSILVLNGSGGVGSLVIQLAKQVFGAS-RVAATSST---RNLEF-LKSLG---AD---LAIDYTKD-NFEDLPEKFD  298 (392)
Q Consensus       231 ~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~-vv~~~~~~---~~~~~-~~~~G---~~---~vi~~~~~-~~~~~~~~~D  298 (392)
                      -.+.+++|+| +|++|.+++..+.. .|++ ++++.++.   +|.+. ++++.   ..   ...+..+. .+.+....+|
T Consensus       124 ~~~k~vlI~G-AGGagrAia~~La~-~G~~~V~I~~R~~~~~~~a~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~D  201 (289)
T PRK12548        124 VKGKKLTVIG-AGGAATAIQVQCAL-DGAKEITIFNIKDDFYERAEQTAEKIKQEVPECIVNVYDLNDTEKLKAEIASSD  201 (289)
T ss_pred             cCCCEEEEEC-CcHHHHHHHHHHHH-CCCCEEEEEeCCchHHHHHHHHHHHHhhcCCCceeEEechhhhhHHHhhhccCC
Confidence            3578999999 58999998876666 4886 77777775   44333 33332   11   11232221 2222334679


Q ss_pred             EEEecCc
Q 016265          299 VVYDAIG  305 (392)
Q Consensus       299 ~vid~~G  305 (392)
                      ++|+|+.
T Consensus       202 ilINaTp  208 (289)
T PRK12548        202 ILVNATL  208 (289)
T ss_pred             EEEEeCC
Confidence            9999974

>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF)

Probab=93.50  E-value=0.63  Score=39.79  Aligned_cols=95  Identities=27%  Similarity=0.303  Sum_probs=55.6

Q ss_pred             ccchhHHHHHHHHHhcCC-CCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCCccc
Q 016265          213 GLPLAIETAYEGLERTGF-SAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFE  291 (392)
Q Consensus       213 ~l~~~~~ta~~al~~~~~-~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~  291 (392)
                      .+|+.....+..|+..++ -.|++|+|.|.+.-+|.-.+.+... .|+.|.+.....+.++.                  
T Consensus        15 ~~PcTp~aii~lL~~~~~~l~Gk~v~VvGrs~~VG~Pla~lL~~-~~atVt~~h~~T~~l~~------------------   75 (160)
T PF02882_consen   15 FVPCTPLAIIELLEYYGIDLEGKKVVVVGRSNIVGKPLAMLLLN-KGATVTICHSKTKNLQE------------------   75 (160)
T ss_dssp             S--HHHHHHHHHHHHTT-STTT-EEEEE-TTTTTHHHHHHHHHH-TT-EEEEE-TTSSSHHH------------------
T ss_pred             CcCCCHHHHHHHHHhcCCCCCCCEEEEECCcCCCChHHHHHHHh-CCCeEEeccCCCCcccc------------------
Confidence            445555555556665543 5789999999888999998888888 59988777654433322                  


Q ss_pred             cCCCCccEEEecCccHH-HHHHhcccCCeEEEEcCCC
Q 016265          292 DLPEKFDVVYDAIGQCD-RAVKAIKEGGTVVALTGAV  327 (392)
Q Consensus       292 ~~~~~~D~vid~~G~~~-~~~~~l~~~G~iv~~g~~~  327 (392)
                       ..+..|+|+.++|..+ ---+.+++|..++.+|...
T Consensus        76 -~~~~ADIVVsa~G~~~~i~~~~ik~gavVIDvG~~~  111 (160)
T PF02882_consen   76 -ITRRADIVVSAVGKPNLIKADWIKPGAVVIDVGINY  111 (160)
T ss_dssp             -HHTTSSEEEE-SSSTT-B-GGGS-TTEEEEE--CEE
T ss_pred             -eeeeccEEeeeeccccccccccccCCcEEEecCCcc
Confidence             2235688888888422 1223678887888776543

Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....

>PRK06523 short chain dehydrogenase; Provisional

Probab=93.47  E-value=0.29  Score=44.91  Aligned_cols=37  Identities=32%  Similarity=0.457  Sum_probs=31.2

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcc
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTR  269 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~  269 (392)
                      .|.+|||+||+|++|...++.+.. .|++++++.++..
T Consensus         8 ~~k~vlItGas~gIG~~ia~~l~~-~G~~v~~~~r~~~   44 (260)
T PRK06523          8 AGKRALVTGGTKGIGAATVARLLE-AGARVVTTARSRP   44 (260)
T ss_pred             CCCEEEEECCCCchhHHHHHHHHH-CCCEEEEEeCChh
Confidence            478999999999999998887766 4999998887654

>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed

Probab=93.44  E-value=0.39  Score=43.44  Aligned_cols=73  Identities=25%  Similarity=0.388  Sum_probs=46.4

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHH-HhcCCcE-EE--eCCCC-cccc-------CCCCccE
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFL-KSLGADL-AI--DYTKD-NFED-------LPEKFDV  299 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~-~~~G~~~-vi--~~~~~-~~~~-------~~~~~D~  299 (392)
                      ++.+++|+||+|++|...+..... .|+.+++..++.++++.+ .+++... ++  |..+. .+.+       ...++|+
T Consensus         5 ~~~~vlItGa~g~iG~~la~~l~~-~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~   83 (245)
T PRK12936          5 SGRKALVTGASGGIGEEIARLLHA-QGAIVGLHGTRVEKLEALAAELGERVKIFPANLSDRDEVKALGQKAEADLEGVDI   83 (245)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHH-CCCEEEEEcCCHHHHHHHHHHhCCceEEEEccCCCHHHHHHHHHHHHHHcCCCCE
Confidence            467999999999999987777666 488777777766665544 3344221 22  22221 1111       1246899


Q ss_pred             EEecCc
Q 016265          300 VYDAIG  305 (392)
Q Consensus       300 vid~~G  305 (392)
                      +|.+.|
T Consensus        84 vi~~ag   89 (245)
T PRK12936         84 LVNNAG   89 (245)
T ss_pred             EEECCC
Confidence            999876

>PLN02396 hexaprenyldihydroxybenzoate methyltransferase

Probab=93.43  E-value=0.27  Score=47.17  Aligned_cols=90  Identities=21%  Similarity=0.258  Sum_probs=57.7

Q ss_pred             CCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhc----CCcEEEeCCCCcccc---CCCCccEEEe
Q 016265          230 FSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSL----GADLAIDYTKDNFED---LPEKFDVVYD  302 (392)
Q Consensus       230 ~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~----G~~~vi~~~~~~~~~---~~~~~D~vid  302 (392)
                      ..+|.+||=+| +| .|..+..+++  .|++++.++.+++.++.+++.    +...-+.+...+..+   ..+.||+|+.
T Consensus       129 ~~~g~~ILDIG-CG-~G~~s~~La~--~g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~  204 (322)
T PLN02396        129 PFEGLKFIDIG-CG-GGLLSEPLAR--MGATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLS  204 (322)
T ss_pred             CCCCCEEEEee-CC-CCHHHHHHHH--cCCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEE
Confidence            45677888887 43 3666777775  389999999999988887642    111112222222222   2357999985


Q ss_pred             cC-----c----cHHHHHHhcccCCeEEEE
Q 016265          303 AI-----G----QCDRAVKAIKEGGTVVAL  323 (392)
Q Consensus       303 ~~-----G----~~~~~~~~l~~~G~iv~~  323 (392)
                      .-     .    .+..+.++|+|||.++..
T Consensus       205 ~~vLeHv~d~~~~L~~l~r~LkPGG~liis  234 (322)
T PLN02396        205 LEVIEHVANPAEFCKSLSALTIPNGATVLS  234 (322)
T ss_pred             hhHHHhcCCHHHHHHHHHHHcCCCcEEEEE
Confidence            32     1    257788899999998765

>PRK05650 short chain dehydrogenase; Provisional

Probab=93.42  E-value=0.38  Score=44.55  Aligned_cols=70  Identities=16%  Similarity=0.146  Sum_probs=45.4

Q ss_pred             eEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHH----HhcCCcE-EE--eCCCC-cccc-------CCCCccE
Q 016265          235 SILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFL----KSLGADL-AI--DYTKD-NFED-------LPEKFDV  299 (392)
Q Consensus       235 ~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~----~~~G~~~-vi--~~~~~-~~~~-------~~~~~D~  299 (392)
                      +|+|+||+|++|...+..... .|++|++++++.++++.+    ++.|.+. .+  |..+. .+.+       ...++|+
T Consensus         2 ~vlVtGasggIG~~la~~l~~-~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~id~   80 (270)
T PRK05650          2 RVMITGAASGLGRAIALRWAR-EGWRLALADVNEEGGEETLKLLREAGGDGFYQRCDVRDYSQLTALAQACEEKWGGIDV   80 (270)
T ss_pred             EEEEecCCChHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHcCCCCE
Confidence            689999999999998776656 599999998877665433    2334332 22  22221 1111       1246899


Q ss_pred             EEecCc
Q 016265          300 VYDAIG  305 (392)
Q Consensus       300 vid~~G  305 (392)
                      +|.+.|
T Consensus        81 lI~~ag   86 (270)
T PRK05650         81 IVNNAG   86 (270)
T ss_pred             EEECCC
Confidence            999877

>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional

Probab=93.42  E-value=0.39  Score=44.30  Aligned_cols=35  Identities=17%  Similarity=0.190  Sum_probs=27.9

Q ss_pred             CCCeEEEEcCC--CcHHHHHHHHHHHhcCCeEEEEeCC
Q 016265          232 AGKSILVLNGS--GGVGSLVIQLAKQVFGASRVAATSS  267 (392)
Q Consensus       232 ~g~~VlI~Ga~--G~vG~~aiqlak~~~G~~vv~~~~~  267 (392)
                      .|++++|+||+  +++|.+.++.... .|++|+++.++
T Consensus         6 ~~k~~lItGa~~s~GIG~aia~~la~-~G~~v~~~~r~   42 (257)
T PRK08594          6 EGKTYVVMGVANKRSIAWGIARSLHN-AGAKLVFTYAG   42 (257)
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHH-CCCEEEEecCc
Confidence            47899999986  7999997776655 49998887654

>PRK07775 short chain dehydrogenase; Provisional

Probab=93.40  E-value=0.37  Score=44.80  Aligned_cols=40  Identities=18%  Similarity=0.193  Sum_probs=31.9

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHH
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLE  272 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~  272 (392)
                      ...+++|+||+|++|...++.+.. .|++|+++.++.++.+
T Consensus         9 ~~~~vlVtGa~g~iG~~la~~L~~-~G~~V~~~~r~~~~~~   48 (274)
T PRK07775          9 DRRPALVAGASSGIGAATAIELAA-AGFPVALGARRVEKCE   48 (274)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHH-CCCEEEEEeCCHHHHH
Confidence            346899999999999998877666 4999888887666544

>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed

Probab=93.40  E-value=0.38  Score=43.63  Aligned_cols=40  Identities=18%  Similarity=0.253  Sum_probs=32.3

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHH
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLE  272 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~  272 (392)
                      .+.+|+|+||+|++|...+..... .|.+|++++++.++..
T Consensus         5 ~~~~ilItGasg~iG~~l~~~l~~-~g~~V~~~~r~~~~~~   44 (251)
T PRK12826          5 EGRVALVTGAARGIGRAIAVRLAA-DGAEVIVVDICGDDAA   44 (251)
T ss_pred             CCCEEEEcCCCCcHHHHHHHHHHH-CCCEEEEEeCCHHHHH
Confidence            467899999999999988876666 4999999888765543

>PRK12480 D-lactate dehydrogenase; Provisional

Probab=93.40  E-value=0.39  Score=46.29  Aligned_cols=83  Identities=16%  Similarity=0.262  Sum_probs=58.6

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCCccccCCCCccEEEecCcc-----
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFEDLPEKFDVVYDAIGQ-----  306 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~~~~~~~D~vid~~G~-----  306 (392)
                      .|.+|.|+| .|.+|...++.++. +|.+|++.++++.+....    .    .+ ..+..+..+..|+|+.++..     
T Consensus       145 ~g~~VgIIG-~G~IG~~vA~~L~~-~G~~V~~~d~~~~~~~~~----~----~~-~~~l~ell~~aDiVil~lP~t~~t~  213 (330)
T PRK12480        145 KNMTVAIIG-TGRIGAATAKIYAG-FGATITAYDAYPNKDLDF----L----TY-KDSVKEAIKDADIISLHVPANKESY  213 (330)
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHh-CCCEEEEEeCChhHhhhh----h----hc-cCCHHHHHhcCCEEEEeCCCcHHHH
Confidence            567899998 99999999999988 699999998765432211    0    01 12344455678999988762     


Q ss_pred             ---HHHHHHhcccCCeEEEEcC
Q 016265          307 ---CDRAVKAIKEGGTVVALTG  325 (392)
Q Consensus       307 ---~~~~~~~l~~~G~iv~~g~  325 (392)
                         ....+..++++..+|..+-
T Consensus       214 ~li~~~~l~~mk~gavlIN~aR  235 (330)
T PRK12480        214 HLFDKAMFDHVKKGAILVNAAR  235 (330)
T ss_pred             HHHhHHHHhcCCCCcEEEEcCC
Confidence               1466778888888877653

>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=93.39  E-value=0.3  Score=50.14  Aligned_cols=84  Identities=23%  Similarity=0.323  Sum_probs=57.8

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCCccccCCCCccEEEecCcc-----
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFEDLPEKFDVVYDAIGQ-----  306 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~~~~~~~D~vid~~G~-----  306 (392)
                      .|.+|.|+| .|.+|...++.++. +|+++++.++... .+....+|...+      ++.+..+..|+|+-++..     
T Consensus       139 ~gktvgIiG-~G~IG~~vA~~l~~-fG~~V~~~d~~~~-~~~~~~~g~~~~------~l~ell~~aDiV~l~lP~t~~t~  209 (526)
T PRK13581        139 YGKTLGIIG-LGRIGSEVAKRAKA-FGMKVIAYDPYIS-PERAAQLGVELV------SLDELLARADFITLHTPLTPETR  209 (526)
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHh-CCCEEEEECCCCC-hhHHHhcCCEEE------cHHHHHhhCCEEEEccCCChHhh
Confidence            478999998 99999999999998 6999998887432 233445555322      233444566777776541     


Q ss_pred             --H-HHHHHhcccCCeEEEEc
Q 016265          307 --C-DRAVKAIKEGGTVVALT  324 (392)
Q Consensus       307 --~-~~~~~~l~~~G~iv~~g  324 (392)
                        + ...++.|+++..+|.++
T Consensus       210 ~li~~~~l~~mk~ga~lIN~a  230 (526)
T PRK13581        210 GLIGAEELAKMKPGVRIINCA  230 (526)
T ss_pred             cCcCHHHHhcCCCCeEEEECC
Confidence              1 45677777777777664

>PRK07097 gluconate 5-dehydrogenase; Provisional

Probab=93.37  E-value=0.4  Score=44.27  Aligned_cols=73  Identities=21%  Similarity=0.287  Sum_probs=47.0

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHH----HhcCCcE-EE--eCCCCc-ccc-------CCCC
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFL----KSLGADL-AI--DYTKDN-FED-------LPEK  296 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~----~~~G~~~-vi--~~~~~~-~~~-------~~~~  296 (392)
                      .+.+++|+||++++|...+..... .|++++++.+++++++.+    ++.|... .+  |..+.. ..+       ...+
T Consensus         9 ~~k~~lItGa~~~iG~~ia~~l~~-~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~   87 (265)
T PRK07097          9 KGKIALITGASYGIGFAIAKAYAK-AGATIVFNDINQELVDKGLAAYRELGIEAHGYVCDVTDEDGVQAMVSQIEKEVGV   87 (265)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHH-CCCeEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHhCCC
Confidence            567999999999999887765555 499999888877665433    2334332 22  322211 111       1246


Q ss_pred             ccEEEecCc
Q 016265          297 FDVVYDAIG  305 (392)
Q Consensus       297 ~D~vid~~G  305 (392)
                      +|++|.+.|
T Consensus        88 id~li~~ag   96 (265)
T PRK07097         88 IDILVNNAG   96 (265)
T ss_pred             CCEEEECCC
Confidence            899999876

>PRK07340 ornithine cyclodeaminase; Validated

Probab=93.36  E-value=0.26  Score=46.86  Aligned_cols=92  Identities=14%  Similarity=0.098  Sum_probs=60.6

Q ss_pred             cCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCe-EEEEeCCcccHHH-HHhcC---CcEEEeCCCCccccCCCCccEEEe
Q 016265          228 TGFSAGKSILVLNGSGGVGSLVIQLAKQVFGAS-RVAATSSTRNLEF-LKSLG---ADLAIDYTKDNFEDLPEKFDVVYD  302 (392)
Q Consensus       228 ~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~-vv~~~~~~~~~~~-~~~~G---~~~vi~~~~~~~~~~~~~~D~vid  302 (392)
                      ..-....+++|+| +|..|.+.+..+...++.+ +.+..++.+|.+. ++++.   ....    ..+..+..+++|+|+.
T Consensus       120 La~~~~~~v~IiG-aG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~~~~~~~----~~~~~~av~~aDiVit  194 (304)
T PRK07340        120 LAPAPPGDLLLIG-TGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARALGPTAE----PLDGEAIPEAVDLVVT  194 (304)
T ss_pred             hCCCCCCEEEEEC-CcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCCeeE----ECCHHHHhhcCCEEEE
Confidence            3334567899998 9999999888876545754 5566777776554 34443   2211    1234444568999999


Q ss_pred             cCcc----HHHHHHhcccCCeEEEEcCCC
Q 016265          303 AIGQ----CDRAVKAIKEGGTVVALTGAV  327 (392)
Q Consensus       303 ~~G~----~~~~~~~l~~~G~iv~~g~~~  327 (392)
                      |+.+    +..   .++||-.+..+|.+.
T Consensus       195 aT~s~~Pl~~~---~~~~g~hi~~iGs~~  220 (304)
T PRK07340        195 ATTSRTPVYPE---AARAGRLVVAVGAFT  220 (304)
T ss_pred             ccCCCCceeCc---cCCCCCEEEecCCCC
Confidence            9873    232   378888888888654

>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase

Probab=93.36  E-value=0.22  Score=49.11  Aligned_cols=41  Identities=20%  Similarity=0.284  Sum_probs=33.8

Q ss_pred             CCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCccc
Q 016265          229 GFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRN  270 (392)
Q Consensus       229 ~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~  270 (392)
                      +...+.+|+|+||+|.+|...+..+.. .|.+|++++++..+
T Consensus        56 ~~~~~~kVLVtGatG~IG~~l~~~Ll~-~G~~V~~l~R~~~~   96 (390)
T PLN02657         56 KEPKDVTVLVVGATGYIGKFVVRELVR-RGYNVVAVAREKSG   96 (390)
T ss_pred             cCCCCCEEEEECCCcHHHHHHHHHHHH-CCCEEEEEEechhh
Confidence            445678999999999999999887776 49999999886543

>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional

Probab=93.35  E-value=0.34  Score=44.09  Aligned_cols=73  Identities=21%  Similarity=0.277  Sum_probs=45.2

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEE-eCCcccHHH----HHhcCCcE-EE--eCCCCc-cc----c---CCC
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAA-TSSTRNLEF----LKSLGADL-AI--DYTKDN-FE----D---LPE  295 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~-~~~~~~~~~----~~~~G~~~-vi--~~~~~~-~~----~---~~~  295 (392)
                      .|.+++|+||+|++|+..+..... .|+++++. .++.++.+.    +++.+... .+  |..+.. ..    +   ..+
T Consensus         3 ~~~~vlItGa~g~iG~~~a~~l~~-~g~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   81 (250)
T PRK08063          3 SGKVALVTGSSRGIGKAIALRLAE-EGYDIAVNYARSRKAAEETAEEIEALGRKALAVKANVGDVEKIKEMFAQIDEEFG   81 (250)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHH-CCCEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            467999999999999998887776 59988764 455554432    23344332 22  222211 11    1   123


Q ss_pred             CccEEEecCc
Q 016265          296 KFDVVYDAIG  305 (392)
Q Consensus       296 ~~D~vid~~G  305 (392)
                      ++|++|.+.|
T Consensus        82 ~id~vi~~ag   91 (250)
T PRK08063         82 RLDVFVNNAA   91 (250)
T ss_pred             CCCEEEECCC
Confidence            6899999876

>PLN00203 glutamyl-tRNA reductase

Probab=93.35  E-value=0.37  Score=49.22  Aligned_cols=92  Identities=20%  Similarity=0.307  Sum_probs=58.4

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCC-eEEEEeCCcccHHHHH-hcC-CcE-EEeCCCCccccCCCCccEEEecCcc-
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGA-SRVAATSSTRNLEFLK-SLG-ADL-AIDYTKDNFEDLPEKFDVVYDAIGQ-  306 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~-~vv~~~~~~~~~~~~~-~~G-~~~-vi~~~~~~~~~~~~~~D~vid~~G~-  306 (392)
                      .+.+|+|+| +|.+|.+++..+.. .|+ +++++.++.++.+.+. +++ ... +...  .+..+...++|+||.|+++ 
T Consensus       265 ~~kkVlVIG-AG~mG~~~a~~L~~-~G~~~V~V~nRs~era~~La~~~~g~~i~~~~~--~dl~~al~~aDVVIsAT~s~  340 (519)
T PLN00203        265 ASARVLVIG-AGKMGKLLVKHLVS-KGCTKMVVVNRSEERVAALREEFPDVEIIYKPL--DEMLACAAEADVVFTSTSSE  340 (519)
T ss_pred             CCCEEEEEe-CHHHHHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHhCCCceEeecH--hhHHHHHhcCCEEEEccCCC
Confidence            368899998 79999999998887 586 5777788888766554 453 221 1121  1222334578999999873 


Q ss_pred             ----HHHHHHhccc----CC---eEEEEcCCC
Q 016265          307 ----CDRAVKAIKE----GG---TVVALTGAV  327 (392)
Q Consensus       307 ----~~~~~~~l~~----~G---~iv~~g~~~  327 (392)
                          ....++.+.+    +|   .+++++.+.
T Consensus       341 ~pvI~~e~l~~~~~~~~~~~~~~~~IDLAvPR  372 (519)
T PLN00203        341 TPLFLKEHVEALPPASDTVGGKRLFVDISVPR  372 (519)
T ss_pred             CCeeCHHHHHHhhhcccccCCCeEEEEeCCCC
Confidence                2444444422    23   366666553

>PLN02989 cinnamyl-alcohol dehydrogenase family protein

Probab=93.35  E-value=0.33  Score=46.31  Aligned_cols=74  Identities=20%  Similarity=0.240  Sum_probs=46.7

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHh----cCC---cEEE--eCCCC-ccccCCCCccEE
Q 016265          231 SAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKS----LGA---DLAI--DYTKD-NFEDLPEKFDVV  300 (392)
Q Consensus       231 ~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~----~G~---~~vi--~~~~~-~~~~~~~~~D~v  300 (392)
                      ..|.+|||+||+|.+|...+..+.. .|.+|++++++..+.+....    .+.   -..+  |..+. .+.+..+++|+|
T Consensus         3 ~~~k~vlVtG~~G~IG~~l~~~L~~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~v   81 (325)
T PLN02989          3 DGGKVVCVTGASGYIASWIVKLLLF-RGYTINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGSFELAIDGCETV   81 (325)
T ss_pred             CCCCEEEEECCchHHHHHHHHHHHH-CCCEEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCchHHHHHHcCCCEE
Confidence            3478999999999999998887766 49998887766554332211    121   1122  32221 233334478999


Q ss_pred             EecCc
Q 016265          301 YDAIG  305 (392)
Q Consensus       301 id~~G  305 (392)
                      |.+.|
T Consensus        82 ih~A~   86 (325)
T PLN02989         82 FHTAS   86 (325)
T ss_pred             EEeCC
Confidence            99876

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=93.35  E-value=0.69  Score=41.13  Aligned_cols=78  Identities=21%  Similarity=0.245  Sum_probs=52.4

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHH-hcCCcEEEeCCCCccccCCCCccEEEecC-cc-H
Q 016265          231 SAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLK-SLGADLAIDYTKDNFEDLPEKFDVVYDAI-GQ-C  307 (392)
Q Consensus       231 ~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~-~~G~~~vi~~~~~~~~~~~~~~D~vid~~-G~-~  307 (392)
                      -.|.+|+|.| .|.+|..+++.+.. .|+++++.+.+.++++.+. .+|+. .++..+  +  ....+|+++-|. +. +
T Consensus        26 l~gk~v~I~G-~G~vG~~~A~~L~~-~G~~Vvv~D~~~~~~~~~~~~~g~~-~v~~~~--l--~~~~~Dv~vp~A~~~~I   98 (200)
T cd01075          26 LEGKTVAVQG-LGKVGYKLAEHLLE-EGAKLIVADINEEAVARAAELFGAT-VVAPEE--I--YSVDADVFAPCALGGVI   98 (200)
T ss_pred             CCCCEEEEEC-CCHHHHHHHHHHHH-CCCEEEEEcCCHHHHHHHHHHcCCE-EEcchh--h--ccccCCEEEeccccccc
Confidence            4678999998 89999999999988 5999998888887776664 44653 333311  1  112578888664 32 1


Q ss_pred             -HHHHHhcc
Q 016265          308 -DRAVKAIK  315 (392)
Q Consensus       308 -~~~~~~l~  315 (392)
                       ...++.++
T Consensus        99 ~~~~~~~l~  107 (200)
T cd01075          99 NDDTIPQLK  107 (200)
T ss_pred             CHHHHHHcC
Confidence             34445553

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>KOG1210 consensus Predicted 3-ketosphinganine reductase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=93.34  E-value=0.48  Score=44.56  Aligned_cols=46  Identities=26%  Similarity=0.274  Sum_probs=39.9

Q ss_pred             CCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHH
Q 016265          229 GFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLK  275 (392)
Q Consensus       229 ~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~  275 (392)
                      +.++-..|+|.|++.++|++.+..++. .|+.|.++.++.+|+..++
T Consensus        29 ~~k~~~hi~itggS~glgl~la~e~~~-~ga~Vti~ar~~~kl~~a~   74 (331)
T KOG1210|consen   29 KPKPRRHILITGGSSGLGLALALECKR-EGADVTITARSGKKLLEAK   74 (331)
T ss_pred             ccCccceEEEecCcchhhHHHHHHHHH-ccCceEEEeccHHHHHHHH
Confidence            344557899999999999999999988 5999999999999988775

>PRK06436 glycerate dehydrogenase; Provisional

Probab=93.32  E-value=0.28  Score=46.59  Aligned_cols=81  Identities=28%  Similarity=0.329  Sum_probs=54.6

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCCccccCCCCccEEEecCcc-----
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFEDLPEKFDVVYDAIGQ-----  306 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~~~~~~~D~vid~~G~-----  306 (392)
                      .|.+|.|+| .|.+|...+++++. +|.++++.+++...      .|.....    .++.+.....|+|+.+...     
T Consensus       121 ~gktvgIiG-~G~IG~~vA~~l~a-fG~~V~~~~r~~~~------~~~~~~~----~~l~ell~~aDiv~~~lp~t~~T~  188 (303)
T PRK06436        121 YNKSLGILG-YGGIGRRVALLAKA-FGMNIYAYTRSYVN------DGISSIY----MEPEDIMKKSDFVLISLPLTDETR  188 (303)
T ss_pred             CCCEEEEEC-cCHHHHHHHHHHHH-CCCEEEEECCCCcc------cCccccc----CCHHHHHhhCCEEEECCCCCchhh
Confidence            589999998 99999999999998 69999998875321      1221111    1234444567877777541     


Q ss_pred             --H-HHHHHhcccCCeEEEEc
Q 016265          307 --C-DRAVKAIKEGGTVVALT  324 (392)
Q Consensus       307 --~-~~~~~~l~~~G~iv~~g  324 (392)
                        + ...++.|+++..+|.++
T Consensus       189 ~li~~~~l~~mk~ga~lIN~s  209 (303)
T PRK06436        189 GMINSKMLSLFRKGLAIINVA  209 (303)
T ss_pred             cCcCHHHHhcCCCCeEEEECC
Confidence              1 45677777777776664

>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase

Probab=93.28  E-value=0.33  Score=49.84  Aligned_cols=85  Identities=26%  Similarity=0.377  Sum_probs=56.5

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCCccccCCCCccEEEecCcc-----
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFEDLPEKFDVVYDAIGQ-----  306 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~~~~~~~D~vid~~G~-----  306 (392)
                      .|.+|.|+| .|.+|...++.++. +|+++++.++... .+...++|...+     .++.+.....|+|+-++..     
T Consensus       137 ~gktvgIiG-~G~IG~~vA~~l~~-fG~~V~~~d~~~~-~~~~~~~g~~~~-----~~l~ell~~aDvV~l~lPlt~~T~  208 (525)
T TIGR01327       137 YGKTLGVIG-LGRIGSIVAKRAKA-FGMKVLAYDPYIS-PERAEQLGVELV-----DDLDELLARADFITVHTPLTPETR  208 (525)
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHh-CCCEEEEECCCCC-hhHHHhcCCEEc-----CCHHHHHhhCCEEEEccCCChhhc
Confidence            578999998 99999999999998 6999998886422 233445554211     1234444566777766541     


Q ss_pred             --H-HHHHHhcccCCeEEEEc
Q 016265          307 --C-DRAVKAIKEGGTVVALT  324 (392)
Q Consensus       307 --~-~~~~~~l~~~G~iv~~g  324 (392)
                        + ...++.|+++..+|.++
T Consensus       209 ~li~~~~l~~mk~ga~lIN~a  229 (525)
T TIGR01327       209 GLIGAEELAKMKKGVIIVNCA  229 (525)
T ss_pred             cCcCHHHHhcCCCCeEEEEcC
Confidence              1 45666777777666654

This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.

>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA

Probab=93.28  E-value=0.24  Score=44.83  Aligned_cols=69  Identities=25%  Similarity=0.350  Sum_probs=50.7

Q ss_pred             EEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcc--cHHHHHhcCCcEEE-eCCC-CccccCCCCccEEEecCc
Q 016265          236 ILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTR--NLEFLKSLGADLAI-DYTK-DNFEDLPEKFDVVYDAIG  305 (392)
Q Consensus       236 VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~--~~~~~~~~G~~~vi-~~~~-~~~~~~~~~~D~vid~~G  305 (392)
                      |+|+||+|.+|...++.+.. .+.+|.+.+++..  +.+.++..|+..+. |+.+ +.+.+.-+|+|.||.+++
T Consensus         1 I~V~GatG~~G~~v~~~L~~-~~~~V~~l~R~~~~~~~~~l~~~g~~vv~~d~~~~~~l~~al~g~d~v~~~~~   73 (233)
T PF05368_consen    1 ILVTGATGNQGRSVVRALLS-AGFSVRALVRDPSSDRAQQLQALGAEVVEADYDDPESLVAALKGVDAVFSVTP   73 (233)
T ss_dssp             EEEETTTSHHHHHHHHHHHH-TTGCEEEEESSSHHHHHHHHHHTTTEEEES-TT-HHHHHHHHTTCSEEEEESS
T ss_pred             CEEECCccHHHHHHHHHHHh-CCCCcEEEEeccchhhhhhhhcccceEeecccCCHHHHHHHHcCCceEEeecC
Confidence            79999999999999998887 5899999998764  35667788886442 2322 222333469999999887

NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....

>PLN02986 cinnamyl-alcohol dehydrogenase family protein

Probab=93.22  E-value=0.38  Score=45.86  Aligned_cols=73  Identities=25%  Similarity=0.310  Sum_probs=45.9

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhc----CC--c-EEE--eCCC-CccccCCCCccEEE
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSL----GA--D-LAI--DYTK-DNFEDLPEKFDVVY  301 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~----G~--~-~vi--~~~~-~~~~~~~~~~D~vi  301 (392)
                      .|.+|||+||+|.+|...+..+.. .|.+|++++++..+.+.+..+    +.  . ..+  |..+ ..+.+..+++|+||
T Consensus         4 ~~~~vlVTGatG~iG~~l~~~L~~-~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vi   82 (322)
T PLN02986          4 GGKLVCVTGASGYIASWIVKLLLL-RGYTVKATVRDLTDRKKTEHLLALDGAKERLKLFKADLLEESSFEQAIEGCDAVF   82 (322)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHH-CCCEEEEEECCCcchHHHHHHHhccCCCCceEEEecCCCCcchHHHHHhCCCEEE
Confidence            478999999999999988887666 499988888766543332211    11  1 112  2211 12233345789999


Q ss_pred             ecCc
Q 016265          302 DAIG  305 (392)
Q Consensus       302 d~~G  305 (392)
                      .+.+
T Consensus        83 h~A~   86 (322)
T PLN02986         83 HTAS   86 (322)
T ss_pred             EeCC
Confidence            8865

>PRK14903 16S rRNA methyltransferase B; Provisional

Probab=93.18  E-value=1.4  Score=44.18  Aligned_cols=97  Identities=14%  Similarity=0.182  Sum_probs=61.4

Q ss_pred             hcCCCCCCeEEEEcCCCcHHHHHHHHHHHhc-CCeEEEEeCCcccHHHHH----hcCCcE--EEeCCCCccc-cCCCCcc
Q 016265          227 RTGFSAGKSILVLNGSGGVGSLVIQLAKQVF-GASRVAATSSTRNLEFLK----SLGADL--AIDYTKDNFE-DLPEKFD  298 (392)
Q Consensus       227 ~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~-G~~vv~~~~~~~~~~~~~----~~G~~~--vi~~~~~~~~-~~~~~~D  298 (392)
                      ..++++|++||=.| +| -|-.+++++..+. +.+++.++.++.+++.++    ++|.+.  ++..+...+. ...+.||
T Consensus       232 ~l~~~~g~~VLD~c-ag-pGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~~~~fD  309 (431)
T PRK14903        232 LMELEPGLRVLDTC-AA-PGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYVQDTFD  309 (431)
T ss_pred             HhCCCCCCEEEEeC-CC-ccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhhhccCC
Confidence            34678899887775 43 3555666666532 468899999999987764    467653  2222222222 1234699


Q ss_pred             EEEe---cCc--c--------------------------HHHHHHhcccCCeEEEEcC
Q 016265          299 VVYD---AIG--Q--------------------------CDRAVKAIKEGGTVVALTG  325 (392)
Q Consensus       299 ~vid---~~G--~--------------------------~~~~~~~l~~~G~iv~~g~  325 (392)
                      .|+-   |+|  .                          +..+++.|++||+++....
T Consensus       310 ~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTC  367 (431)
T PRK14903        310 RILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTC  367 (431)
T ss_pred             EEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence            9873   443  1                          3467888999999876644

>PRK06487 glycerate dehydrogenase; Provisional

Probab=93.18  E-value=0.26  Score=47.16  Aligned_cols=79  Identities=22%  Similarity=0.338  Sum_probs=55.9

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCCccccCCCCccEEEecCcc-----
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFEDLPEKFDVVYDAIGQ-----  306 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~~~~~~~D~vid~~G~-----  306 (392)
                      .|.+|.|+| .|.+|...++.++. +|++|++.++.... .     ...      ..++.++-...|+|+.+...     
T Consensus       147 ~gktvgIiG-~G~IG~~vA~~l~~-fgm~V~~~~~~~~~-~-----~~~------~~~l~ell~~sDiv~l~lPlt~~T~  212 (317)
T PRK06487        147 EGKTLGLLG-HGELGGAVARLAEA-FGMRVLIGQLPGRP-A-----RPD------RLPLDELLPQVDALTLHCPLTEHTR  212 (317)
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHhh-CCCEEEEECCCCCc-c-----ccc------ccCHHHHHHhCCEEEECCCCChHHh
Confidence            578999998 99999999999998 79999888764211 0     011      11344445567888877541     


Q ss_pred             --H-HHHHHhcccCCeEEEEc
Q 016265          307 --C-DRAVKAIKEGGTVVALT  324 (392)
Q Consensus       307 --~-~~~~~~l~~~G~iv~~g  324 (392)
                        + ...++.|+++..+|.++
T Consensus       213 ~li~~~~~~~mk~ga~lIN~a  233 (317)
T PRK06487        213 HLIGARELALMKPGALLINTA  233 (317)
T ss_pred             cCcCHHHHhcCCCCeEEEECC
Confidence              1 67888888888887665

>TIGR01289 LPOR light-dependent protochlorophyllide reductase

Probab=93.13  E-value=0.4  Score=45.70  Aligned_cols=41  Identities=15%  Similarity=0.164  Sum_probs=32.3

Q ss_pred             CCeEEEEcCCCcHHHHHHHHHHHhcC-CeEEEEeCCcccHHHH
Q 016265          233 GKSILVLNGSGGVGSLVIQLAKQVFG-ASRVAATSSTRNLEFL  274 (392)
Q Consensus       233 g~~VlI~Ga~G~vG~~aiqlak~~~G-~~vv~~~~~~~~~~~~  274 (392)
                      +.+++|+||++++|...+..... .| .+++++.+++++.+.+
T Consensus         3 ~k~vlITGas~GIG~aia~~L~~-~G~~~V~l~~r~~~~~~~~   44 (314)
T TIGR01289         3 KPTVIITGASSGLGLYAAKALAA-TGEWHVIMACRDFLKAEQA   44 (314)
T ss_pred             CCEEEEECCCChHHHHHHHHHHH-cCCCEEEEEeCCHHHHHHH
Confidence            56899999999999987765555 48 8888888877765544

This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form.

>PRK08703 short chain dehydrogenase; Provisional

Probab=93.13  E-value=0.22  Score=45.14  Aligned_cols=42  Identities=29%  Similarity=0.396  Sum_probs=34.7

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHH
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFL  274 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~  274 (392)
                      .|.+++|+||+|++|...++.... .|++|+++.+++++.+.+
T Consensus         5 ~~k~vlItG~sggiG~~la~~l~~-~g~~V~~~~r~~~~~~~~   46 (239)
T PRK08703          5 SDKTILVTGASQGLGEQVAKAYAA-AGATVILVARHQKKLEKV   46 (239)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHH-cCCEEEEEeCChHHHHHH
Confidence            467999999999999998887776 599999999887765543

>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=93.12  E-value=1  Score=42.23  Aligned_cols=94  Identities=21%  Similarity=0.169  Sum_probs=66.7

Q ss_pred             ccchhHHHHHHHHHhcCCC-CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCCccc
Q 016265          213 GLPLAIETAYEGLERTGFS-AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFE  291 (392)
Q Consensus       213 ~l~~~~~ta~~al~~~~~~-~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~  291 (392)
                      ..||.....+..|+..++. .|.+|+|+|-+.-+|.-.++++.. .++.|.++.+....                   +.
T Consensus       138 ~~PcTp~av~~ll~~~~i~l~Gk~vvViGrs~iVG~Pla~lL~~-~~atVtv~hs~T~~-------------------l~  197 (285)
T PRK10792        138 LRPCTPRGIMTLLERYGIDTYGLNAVVVGASNIVGRPMSLELLL-AGCTVTVCHRFTKN-------------------LR  197 (285)
T ss_pred             CCCCCHHHHHHHHHHcCCCCCCCEEEEECCCcccHHHHHHHHHH-CCCeEEEEECCCCC-------------------HH
Confidence            3466666666677766543 699999999777799999998887 59988777653222                   23


Q ss_pred             cCCCCccEEEecCccHH-HHHHhcccCCeEEEEcCC
Q 016265          292 DLPEKFDVVYDAIGQCD-RAVKAIKEGGTVVALTGA  326 (392)
Q Consensus       292 ~~~~~~D~vid~~G~~~-~~~~~l~~~G~iv~~g~~  326 (392)
                      +..+.+|++|.++|... ---+.+++|..++.+|..
T Consensus       198 ~~~~~ADIvi~avG~p~~v~~~~vk~gavVIDvGin  233 (285)
T PRK10792        198 HHVRNADLLVVAVGKPGFIPGEWIKPGAIVIDVGIN  233 (285)
T ss_pred             HHHhhCCEEEEcCCCcccccHHHcCCCcEEEEcccc
Confidence            33456799999998321 222678999999988854

>PRK06997 enoyl-(acyl carrier protein) reductase; Provisional

Probab=93.10  E-value=0.38  Score=44.45  Aligned_cols=73  Identities=22%  Similarity=0.305  Sum_probs=42.8

Q ss_pred             CCCeEEEEcC--CCcHHHHHHHHHHHhcCCeEEEEeCC---cccHHHH-HhcCCcEEE--eCCCC-cccc-------CCC
Q 016265          232 AGKSILVLNG--SGGVGSLVIQLAKQVFGASRVAATSS---TRNLEFL-KSLGADLAI--DYTKD-NFED-------LPE  295 (392)
Q Consensus       232 ~g~~VlI~Ga--~G~vG~~aiqlak~~~G~~vv~~~~~---~~~~~~~-~~~G~~~vi--~~~~~-~~~~-------~~~  295 (392)
                      .|.+++|+||  ++++|.+.++.... .|++++++.+.   +++++.+ ++++....+  |..+. ...+       .-+
T Consensus         5 ~~k~vlItGas~~~GIG~a~a~~l~~-~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g   83 (260)
T PRK06997          5 AGKRILITGLLSNRSIAYGIAKACKR-EGAELAFTYVGDRFKDRITEFAAEFGSDLVFPCDVASDEQIDALFASLGQHWD   83 (260)
T ss_pred             CCcEEEEeCCCCCCcHHHHHHHHHHH-CCCeEEEEccchHHHHHHHHHHHhcCCcceeeccCCCHHHHHHHHHHHHHHhC
Confidence            4789999996  57999997766555 49998887532   2333333 344533222  32221 1111       124


Q ss_pred             CccEEEecCc
Q 016265          296 KFDVVYDAIG  305 (392)
Q Consensus       296 ~~D~vid~~G  305 (392)
                      ++|++|++.|
T Consensus        84 ~iD~lvnnAG   93 (260)
T PRK06997         84 GLDGLVHSIG   93 (260)
T ss_pred             CCcEEEEccc
Confidence            6899888765

>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]

Probab=93.05  E-value=0.11  Score=42.52  Aligned_cols=91  Identities=18%  Similarity=0.169  Sum_probs=46.6

Q ss_pred             eEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeC-Ccc-c--HHHHHhcCCcEEEeCCCCccccCCCCccEEEecCc--cHH
Q 016265          235 SILVLNGSGGVGSLVIQLAKQVFGASRVAATS-STR-N--LEFLKSLGADLAIDYTKDNFEDLPEKFDVVYDAIG--QCD  308 (392)
Q Consensus       235 ~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~-~~~-~--~~~~~~~G~~~vi~~~~~~~~~~~~~~D~vid~~G--~~~  308 (392)
                      +|+|+|..|-+|...++.+....+.+++.+.. ++. .  .+...-.|....=-....+..+..+.+|++||++.  ...
T Consensus         2 rV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v~~~l~~~~~~~DVvIDfT~p~~~~   81 (124)
T PF01113_consen    2 RVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPVTDDLEELLEEADVVIDFTNPDAVY   81 (124)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBEBS-HHHHTTH-SEEEEES-HHHHH
T ss_pred             EEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcCCcccccchhHHHhcccCCEEEEcCChHHhH
Confidence            68999977999999999998855777676543 331 1  11111111110000001233444445899999985  233


Q ss_pred             HHHHhcccCCeEEEEcC
Q 016265          309 RAVKAIKEGGTVVALTG  325 (392)
Q Consensus       309 ~~~~~l~~~G~iv~~g~  325 (392)
                      ..++.+...|.-+.+|.
T Consensus        82 ~~~~~~~~~g~~~ViGT   98 (124)
T PF01113_consen   82 DNLEYALKHGVPLVIGT   98 (124)
T ss_dssp             HHHHHHHHHT-EEEEE-
T ss_pred             HHHHHHHhCCCCEEEEC
Confidence            44444444465555543

In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....

>PRK12938 acetyacetyl-CoA reductase; Provisional

Probab=92.97  E-value=0.54  Score=42.66  Aligned_cols=73  Identities=22%  Similarity=0.306  Sum_probs=44.9

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeC-Cccc-HHH---HHhcCCcEE---EeCCCC-cccc-------CCC
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATS-STRN-LEF---LKSLGADLA---IDYTKD-NFED-------LPE  295 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~-~~~~-~~~---~~~~G~~~v---i~~~~~-~~~~-------~~~  295 (392)
                      .+.+++|+|++|++|...++.+.. .|+++++... .+.+ .+.   +++.+....   .|..+. ...+       ..+
T Consensus         2 ~~k~~lVtG~s~giG~~~a~~l~~-~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   80 (246)
T PRK12938          2 SQRIAYVTGGMGGIGTSICQRLHK-DGFKVVAGCGPNSPRRVKWLEDQKALGFDFIASEGNVGDWDSTKAAFDKVKAEVG   80 (246)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHH-cCCEEEEEcCCChHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHhC
Confidence            367899999999999998887766 4998887543 2222 222   233454332   232221 1111       124


Q ss_pred             CccEEEecCc
Q 016265          296 KFDVVYDAIG  305 (392)
Q Consensus       296 ~~D~vid~~G  305 (392)
                      ++|++|.+.|
T Consensus        81 ~id~li~~ag   90 (246)
T PRK12938         81 EIDVLVNNAG   90 (246)
T ss_pred             CCCEEEECCC
Confidence            7899999987

>PRK06940 short chain dehydrogenase; Provisional

Probab=92.96  E-value=0.79  Score=42.70  Aligned_cols=90  Identities=20%  Similarity=0.305  Sum_probs=55.1

Q ss_pred             CCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHH----HhcCCcE-EE--eCCCCc-ccc----C--CCCcc
Q 016265          233 GKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFL----KSLGADL-AI--DYTKDN-FED----L--PEKFD  298 (392)
Q Consensus       233 g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~----~~~G~~~-vi--~~~~~~-~~~----~--~~~~D  298 (392)
                      +++++|.|+ |++|...+... . .|++|+++++++++++.+    +..|... ++  |..+.. ..+    .  -.++|
T Consensus         2 ~k~~lItGa-~gIG~~la~~l-~-~G~~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~i~~~~~~~~~~g~id   78 (275)
T PRK06940          2 KEVVVVIGA-GGIGQAIARRV-G-AGKKVLLADYNEENLEAAAKTLREAGFDVSTQEVDVSSRESVKALAATAQTLGPVT   78 (275)
T ss_pred             CCEEEEECC-ChHHHHHHHHH-h-CCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEeecCCHHHHHHHHHHHHhcCCCC
Confidence            357888885 89999988877 3 499999998877665433    2234321 22  333221 111    1  24689


Q ss_pred             EEEecCcc---------------------HHHHHHhcccCCeEEEEcC
Q 016265          299 VVYDAIGQ---------------------CDRAVKAIKEGGTVVALTG  325 (392)
Q Consensus       299 ~vid~~G~---------------------~~~~~~~l~~~G~iv~~g~  325 (392)
                      ++|.+.|.                     ++.+++.++.+|+++.++.
T Consensus        79 ~li~nAG~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~iv~isS  126 (275)
T PRK06940         79 GLVHTAGVSPSQASPEAILKVDLYGTALVLEEFGKVIAPGGAGVVIAS  126 (275)
T ss_pred             EEEECCCcCCchhhHHHHHHHhhHHHHHHHHHHHHHHhhCCCEEEEEe
Confidence            99999871                     1334455666787776643

>PRK07890 short chain dehydrogenase; Provisional

Probab=92.93  E-value=0.23  Score=45.40  Aligned_cols=43  Identities=26%  Similarity=0.314  Sum_probs=34.7

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHH
Q 016265          231 SAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFL  274 (392)
Q Consensus       231 ~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~  274 (392)
                      -.+.+++|+||+|++|...+..+.. .|++|+++++++++.+.+
T Consensus         3 l~~k~vlItGa~~~IG~~la~~l~~-~G~~V~~~~r~~~~~~~~   45 (258)
T PRK07890          3 LKGKVVVVSGVGPGLGRTLAVRAAR-AGADVVLAARTAERLDEV   45 (258)
T ss_pred             cCCCEEEEECCCCcHHHHHHHHHHH-cCCEEEEEeCCHHHHHHH
Confidence            3578999999999999998877666 599999998877665444

>PRK08278 short chain dehydrogenase; Provisional

Probab=92.89  E-value=0.51  Score=43.86  Aligned_cols=37  Identities=27%  Similarity=0.427  Sum_probs=30.4

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcc
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTR  269 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~  269 (392)
                      .+.+++|+||+|++|...+..+.. .|++++++.++.+
T Consensus         5 ~~k~vlItGas~gIG~~ia~~l~~-~G~~V~~~~r~~~   41 (273)
T PRK08278          5 SGKTLFITGASRGIGLAIALRAAR-DGANIVIAAKTAE   41 (273)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHH-CCCEEEEEecccc
Confidence            467999999999999988876666 4999998887543

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=92.88  E-value=1.1  Score=35.58  Aligned_cols=85  Identities=18%  Similarity=0.214  Sum_probs=58.1

Q ss_pred             EEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCCc---cccC-CCCccEEEecCccH----
Q 016265          236 ILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDN---FEDL-PEKFDVVYDAIGQC----  307 (392)
Q Consensus       236 VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~---~~~~-~~~~D~vid~~G~~----  307 (392)
                      |+|.| .|.+|...++.++. .+.++++++.++++.+.+++.|.. ++..+..+   +.+. .+.+|.++-+++.-    
T Consensus         1 vvI~G-~g~~~~~i~~~L~~-~~~~vvvid~d~~~~~~~~~~~~~-~i~gd~~~~~~l~~a~i~~a~~vv~~~~~d~~n~   77 (116)
T PF02254_consen    1 VVIIG-YGRIGREIAEQLKE-GGIDVVVIDRDPERVEELREEGVE-VIYGDATDPEVLERAGIEKADAVVILTDDDEENL   77 (116)
T ss_dssp             EEEES--SHHHHHHHHHHHH-TTSEEEEEESSHHHHHHHHHTTSE-EEES-TTSHHHHHHTTGGCESEEEEESSSHHHHH
T ss_pred             eEEEc-CCHHHHHHHHHHHh-CCCEEEEEECCcHHHHHHHhcccc-cccccchhhhHHhhcCccccCEEEEccCCHHHHH
Confidence            67888 89999999999988 577899999999999999988854 44433322   2222 35789888887731    


Q ss_pred             --HHHHHhcccCCeEEEE
Q 016265          308 --DRAVKAIKEGGTVVAL  323 (392)
Q Consensus       308 --~~~~~~l~~~G~iv~~  323 (392)
                        -..++-+.+..+++..
T Consensus        78 ~~~~~~r~~~~~~~ii~~   95 (116)
T PF02254_consen   78 LIALLARELNPDIRIIAR   95 (116)
T ss_dssp             HHHHHHHHHTTTSEEEEE
T ss_pred             HHHHHHHHHCCCCeEEEE
Confidence              2344445556666544

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases

Probab=92.86  E-value=0.26  Score=41.78  Aligned_cols=71  Identities=24%  Similarity=0.382  Sum_probs=41.2

Q ss_pred             CeEEEEcCCCcHHHHHHHHHHHhcCCeEE-EEeCC--cccHHHH----HhcCCcE-EE--eCCCC-cccc-------CCC
Q 016265          234 KSILVLNGSGGVGSLVIQLAKQVFGASRV-AATSS--TRNLEFL----KSLGADL-AI--DYTKD-NFED-------LPE  295 (392)
Q Consensus       234 ~~VlI~Ga~G~vG~~aiqlak~~~G~~vv-~~~~~--~~~~~~~----~~~G~~~-vi--~~~~~-~~~~-------~~~  295 (392)
                      ++++|+||++++|...++..-. .|+.++ ++.++  .++.+.+    ++.+... ++  |..+. ....       ...
T Consensus         1 k~~lItGa~~giG~~~a~~l~~-~g~~~v~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   79 (167)
T PF00106_consen    1 KTVLITGASSGIGRALARALAR-RGARVVILTSRSEDSEGAQELIQELKAPGAKITFIECDLSDPESIRALIEEVIKRFG   79 (167)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHH-TTTEEEEEEESSCHHHHHHHHHHHHHHTTSEEEEEESETTSHHHHHHHHHHHHHHHS
T ss_pred             CEEEEECCCCHHHHHHHHHHHh-cCceEEEEeeecccccccccccccccccccccccccccccccccccccccccccccc
Confidence            4799999999999997776655 367554 55556  3433332    4445322 22  22211 1111       124


Q ss_pred             CccEEEecCc
Q 016265          296 KFDVVYDAIG  305 (392)
Q Consensus       296 ~~D~vid~~G  305 (392)
                      .+|++|.+.|
T Consensus        80 ~ld~li~~ag   89 (167)
T PF00106_consen   80 PLDILINNAG   89 (167)
T ss_dssp             SESEEEEECS
T ss_pred             cccccccccc
Confidence            6899998877

As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....

>PRK08219 short chain dehydrogenase; Provisional

Probab=92.85  E-value=0.33  Score=43.39  Aligned_cols=71  Identities=17%  Similarity=0.250  Sum_probs=45.4

Q ss_pred             CCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHh-cCCcEEE--eCCCC-ccccC---CCCccEEEecCc
Q 016265          233 GKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKS-LGADLAI--DYTKD-NFEDL---PEKFDVVYDAIG  305 (392)
Q Consensus       233 g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~-~G~~~vi--~~~~~-~~~~~---~~~~D~vid~~G  305 (392)
                      ..+++|+||+|.+|...+..+.. . .+|++++++.++.+.+.+ ...-+++  |..+. .+.+.   .+++|.+|.+.|
T Consensus         3 ~~~vlVtG~~g~iG~~l~~~l~~-~-~~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~id~vi~~ag   80 (227)
T PRK08219          3 RPTALITGASRGIGAAIARELAP-T-HTLLLGGRPAERLDELAAELPGATPFPVDLTDPEAIAAAVEQLGRLDVLVHNAG   80 (227)
T ss_pred             CCEEEEecCCcHHHHHHHHHHHh-h-CCEEEEeCCHHHHHHHHHHhccceEEecCCCCHHHHHHHHHhcCCCCEEEECCC
Confidence            35799999999999998887765 4 788888888776555442 2112223  22221 11111   136899999876

>PRK05855 short chain dehydrogenase; Validated

Probab=92.80  E-value=0.39  Score=49.56  Aligned_cols=73  Identities=25%  Similarity=0.280  Sum_probs=48.0

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHH----HhcCCcE-EE--eCCCCc-ccc-------CCCC
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFL----KSLGADL-AI--DYTKDN-FED-------LPEK  296 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~----~~~G~~~-vi--~~~~~~-~~~-------~~~~  296 (392)
                      .+.++||+||+|++|...++.+.. .|++|+++.++.++++.+    ++.|... ++  |..+.. ..+       ..+.
T Consensus       314 ~~~~~lv~G~s~giG~~~a~~l~~-~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~  392 (582)
T PRK05855        314 SGKLVVVTGAGSGIGRETALAFAR-EGAEVVASDIDEAAAERTAELIRAAGAVAHAYRVDVSDADAMEAFAEWVRAEHGV  392 (582)
T ss_pred             CCCEEEEECCcCHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHhcCC
Confidence            457899999999999987776666 499999998887766543    2334322 22  322211 111       1246


Q ss_pred             ccEEEecCc
Q 016265          297 FDVVYDAIG  305 (392)
Q Consensus       297 ~D~vid~~G  305 (392)
                      +|++|++.|
T Consensus       393 id~lv~~Ag  401 (582)
T PRK05855        393 PDIVVNNAG  401 (582)
T ss_pred             CcEEEECCc
Confidence            899999977

>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional

Probab=92.79  E-value=0.35  Score=46.71  Aligned_cols=87  Identities=20%  Similarity=0.235  Sum_probs=50.6

Q ss_pred             CeEEEEcCCCcHHHHHHHHHHHhcCC---eEEEEeCCcccHHHHHhcCCcEEEe-CCCCccccCCCCccEEEecCcc---
Q 016265          234 KSILVLNGSGGVGSLVIQLAKQVFGA---SRVAATSSTRNLEFLKSLGADLAID-YTKDNFEDLPEKFDVVYDAIGQ---  306 (392)
Q Consensus       234 ~~VlI~Ga~G~vG~~aiqlak~~~G~---~vv~~~~~~~~~~~~~~~G~~~vi~-~~~~~~~~~~~~~D~vid~~G~---  306 (392)
                      -+|+|.||+|.+|...++++.. .+.   ++..+.+....-+.+.-.|.+..+. ...   .+. +++|+||.|+|+   
T Consensus         2 ~~V~IvGAtG~vG~~l~~lL~~-~~hp~~~l~~l~s~~~~g~~l~~~g~~i~v~d~~~---~~~-~~vDvVf~A~g~g~s   76 (334)
T PRK14874          2 YNVAVVGATGAVGREMLNILEE-RNFPVDKLRLLASARSAGKELSFKGKELKVEDLTT---FDF-SGVDIALFSAGGSVS   76 (334)
T ss_pred             CEEEEECCCCHHHHHHHHHHHh-CCCCcceEEEEEccccCCCeeeeCCceeEEeeCCH---HHH-cCCCEEEECCChHHH
Confidence            4799999999999999999876 344   3345444322212121112222222 111   122 479999999984   


Q ss_pred             HHHHHHhcccCCeEEEEcC
Q 016265          307 CDRAVKAIKEGGTVVALTG  325 (392)
Q Consensus       307 ~~~~~~~l~~~G~iv~~g~  325 (392)
                      .+.+-+.+..|.+++.++.
T Consensus        77 ~~~~~~~~~~G~~VIDlS~   95 (334)
T PRK14874         77 KKYAPKAAAAGAVVIDNSS   95 (334)
T ss_pred             HHHHHHHHhCCCEEEECCc
Confidence            2444445566667776654

>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=92.77  E-value=0.35  Score=43.75  Aligned_cols=40  Identities=30%  Similarity=0.412  Sum_probs=31.8

Q ss_pred             CCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEE-eCCcccHHH
Q 016265          233 GKSILVLNGSGGVGSLVIQLAKQVFGASRVAA-TSSTRNLEF  273 (392)
Q Consensus       233 g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~-~~~~~~~~~  273 (392)
                      +.++||+||+|++|...+..+.. .|++++++ .++.++.+.
T Consensus         5 ~~~ilI~Gasg~iG~~la~~l~~-~g~~v~~~~~r~~~~~~~   45 (247)
T PRK05565          5 GKVAIVTGASGGIGRAIAELLAK-EGAKVVIAYDINEEAAQE   45 (247)
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHH-CCCEEEEEcCCCHHHHHH
Confidence            56899999999999988876655 49999888 777665543

>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional

Probab=92.76  E-value=0.36  Score=44.50  Aligned_cols=38  Identities=32%  Similarity=0.432  Sum_probs=31.3

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCccc
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRN  270 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~  270 (392)
                      .+.+++|+||+|++|.+.++.+.. .|++++++++++.+
T Consensus         8 ~~k~vlItG~s~gIG~~la~~l~~-~G~~v~~~~~~~~~   45 (266)
T PRK06171          8 QGKIIIVTGGSSGIGLAIVKELLA-NGANVVNADIHGGD   45 (266)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHH-CCCEEEEEeCCccc
Confidence            467999999999999998877766 49999988876554

>PLN02306 hydroxypyruvate reductase

Probab=92.73  E-value=0.37  Score=47.37  Aligned_cols=91  Identities=18%  Similarity=0.289  Sum_probs=59.4

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHH-HhcCCeEEEEeCCccc-HH-HHHhcCCcEE------EeCC-CCccccCCCCccEEE
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAK-QVFGASRVAATSSTRN-LE-FLKSLGADLA------IDYT-KDNFEDLPEKFDVVY  301 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak-~~~G~~vv~~~~~~~~-~~-~~~~~G~~~v------i~~~-~~~~~~~~~~~D~vi  301 (392)
                      .|.+|.|+| .|.+|...++.++ . +|++|++.++.... .+ ....+|.+..      .... ..++.++-...|+|+
T Consensus       164 ~gktvGIiG-~G~IG~~vA~~l~~~-fGm~V~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~ell~~sDiV~  241 (386)
T PLN02306        164 KGQTVGVIG-AGRIGSAYARMMVEG-FKMNLIYYDLYQSTRLEKFVTAYGQFLKANGEQPVTWKRASSMEEVLREADVIS  241 (386)
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHhc-CCCEEEEECCCCchhhhhhhhhhcccccccccccccccccCCHHHHHhhCCEEE
Confidence            478999998 9999999999975 5 79999988875432 11 1122331100      0000 123455556789888


Q ss_pred             ecCc------cH--HHHHHhcccCCeEEEEc
Q 016265          302 DAIG------QC--DRAVKAIKEGGTVVALT  324 (392)
Q Consensus       302 d~~G------~~--~~~~~~l~~~G~iv~~g  324 (392)
                      -+..      .+  ...++.|++|..+|.++
T Consensus       242 lh~Plt~~T~~lin~~~l~~MK~ga~lIN~a  272 (386)
T PLN02306        242 LHPVLDKTTYHLINKERLALMKKEAVLVNAS  272 (386)
T ss_pred             EeCCCChhhhhhcCHHHHHhCCCCeEEEECC
Confidence            8654      11  67888999998888775

>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]

Probab=92.69  E-value=0.78  Score=43.22  Aligned_cols=61  Identities=21%  Similarity=0.284  Sum_probs=49.5

Q ss_pred             HHHhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeC---CcccHHHHHhcCCcEEEeCC
Q 016265          224 GLERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATS---STRNLEFLKSLGADLAIDYT  286 (392)
Q Consensus       224 al~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~---~~~~~~~~~~~G~~~vi~~~  286 (392)
                      +..+..+++|+ .+|-+-+|..|.+.+.+|+. +|.+++++..   +.+|++.++.+|+..++...
T Consensus        53 Ae~~G~l~pG~-tIVE~TSGNTGI~LA~vaa~-~Gy~~iivmP~~~S~er~~~l~a~GAevi~t~~  116 (300)
T COG0031          53 AEKRGLLKPGG-TIVEATSGNTGIALAMVAAA-KGYRLIIVMPETMSQERRKLLRALGAEVILTPG  116 (300)
T ss_pred             HHHcCCCCCCC-EEEEcCCChHHHHHHHHHHH-cCCcEEEEeCCCCCHHHHHHHHHcCCEEEEcCC
Confidence            44566799999 55666799999999999988 5999998864   78899999999998776554

>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=92.63  E-value=0.55  Score=45.11  Aligned_cols=89  Identities=15%  Similarity=0.113  Sum_probs=58.4

Q ss_pred             CeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEE------Ee---CCCCccccCCCCccEEEecC
Q 016265          234 KSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLA------ID---YTKDNFEDLPEKFDVVYDAI  304 (392)
Q Consensus       234 ~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~v------i~---~~~~~~~~~~~~~D~vid~~  304 (392)
                      -+|.|+| +|.+|.+.+..+.. .|.+|.+..+++++.+.+.+.+....      +.   ....+..+..+.+|+||-|+
T Consensus         5 m~I~iIG-~G~mG~~ia~~L~~-~G~~V~~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~aD~Vi~~v   82 (328)
T PRK14618          5 MRVAVLG-AGAWGTALAVLAAS-KGVPVRLWARRPEFAAALAAERENREYLPGVALPAELYPTADPEEALAGADFAVVAV   82 (328)
T ss_pred             CeEEEEC-cCHHHHHHHHHHHH-CCCeEEEEeCCHHHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHHHcCCCEEEEEC
Confidence            4799998 99999988777665 48889999998887776665421100      00   00112223345789999997


Q ss_pred             c--cHHHHHHhcccCCeEEEEc
Q 016265          305 G--QCDRAVKAIKEGGTVVALT  324 (392)
Q Consensus       305 G--~~~~~~~~l~~~G~iv~~g  324 (392)
                      .  ..+.+++.++++-.++.+.
T Consensus        83 ~~~~~~~v~~~l~~~~~vi~~~  104 (328)
T PRK14618         83 PSKALRETLAGLPRALGYVSCA  104 (328)
T ss_pred             chHHHHHHHHhcCcCCEEEEEe
Confidence            6  3567777777776666553

>PLN00016 RNA-binding protein; Provisional

Probab=92.62  E-value=0.51  Score=46.27  Aligned_cols=90  Identities=20%  Similarity=0.237  Sum_probs=57.0

Q ss_pred             CCeEEEE----cCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHH-----------HHHhcCCcEEEeCCCCccccC--CC
Q 016265          233 GKSILVL----NGSGGVGSLVIQLAKQVFGASRVAATSSTRNLE-----------FLKSLGADLAIDYTKDNFEDL--PE  295 (392)
Q Consensus       233 g~~VlI~----Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~-----------~~~~~G~~~vi~~~~~~~~~~--~~  295 (392)
                      ..+|||+    ||+|-+|...+..+.. .|.+|++++++..+..           .+...|...+. .+-.++.+.  ..
T Consensus        52 ~~~VLVt~~~~GatG~iG~~lv~~L~~-~G~~V~~l~R~~~~~~~~~~~~~~~~~~l~~~~v~~v~-~D~~d~~~~~~~~  129 (378)
T PLN00016         52 KKKVLIVNTNSGGHAFIGFYLAKELVK-AGHEVTLFTRGKEPSQKMKKEPFSRFSELSSAGVKTVW-GDPADVKSKVAGA  129 (378)
T ss_pred             cceEEEEeccCCCceeEhHHHHHHHHH-CCCEEEEEecCCcchhhhccCchhhhhHhhhcCceEEE-ecHHHHHhhhccC
Confidence            4689999    9999999988887766 4999999988765422           12233443332 111122222  24


Q ss_pred             CccEEEecCcc----HHHHHHhcccCC--eEEEEc
Q 016265          296 KFDVVYDAIGQ----CDRAVKAIKEGG--TVVALT  324 (392)
Q Consensus       296 ~~D~vid~~G~----~~~~~~~l~~~G--~iv~~g  324 (392)
                      ++|+||++.+.    ...++++++..|  ++|.++
T Consensus       130 ~~d~Vi~~~~~~~~~~~~ll~aa~~~gvkr~V~~S  164 (378)
T PLN00016        130 GFDVVYDNNGKDLDEVEPVADWAKSPGLKQFLFCS  164 (378)
T ss_pred             CccEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEc
Confidence            79999999772    345566665433  687764

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=92.58  E-value=0.98  Score=42.95  Aligned_cols=87  Identities=15%  Similarity=0.198  Sum_probs=53.2

Q ss_pred             CeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhc-CCcEEEeCCCCc-c------ccCCCCccEEEecCc
Q 016265          234 KSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSL-GADLAIDYTKDN-F------EDLPEKFDVVYDAIG  305 (392)
Q Consensus       234 ~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~-G~~~vi~~~~~~-~------~~~~~~~D~vid~~G  305 (392)
                      .+|+|+| +|++|...+..+.. .|.+|.+++++.++++..++. |. .+.+..... +      .+..+.+|+||-|+=
T Consensus         3 m~I~IiG-aGaiG~~~a~~L~~-~G~~V~lv~r~~~~~~~i~~~~Gl-~i~~~g~~~~~~~~~~~~~~~~~~D~viv~vK   79 (305)
T PRK05708          3 MTWHILG-AGSLGSLWACRLAR-AGLPVRLILRDRQRLAAYQQAGGL-TLVEQGQASLYAIPAETADAAEPIHRLLLACK   79 (305)
T ss_pred             ceEEEEC-CCHHHHHHHHHHHh-CCCCeEEEEechHHHHHHhhcCCe-EEeeCCcceeeccCCCCcccccccCEEEEECC
Confidence            3699998 99999865544444 388999999987777767643 43 121111100 0      111246899999975


Q ss_pred             --cH----HHHHHhcccCCeEEEE
Q 016265          306 --QC----DRAVKAIKEGGTVVAL  323 (392)
Q Consensus       306 --~~----~~~~~~l~~~G~iv~~  323 (392)
                        ..    ..+...+.++..++.+
T Consensus        80 ~~~~~~al~~l~~~l~~~t~vv~l  103 (305)
T PRK05708         80 AYDAEPAVASLAHRLAPGAELLLL  103 (305)
T ss_pred             HHhHHHHHHHHHhhCCCCCEEEEE
Confidence              22    3444455667766665

>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional

Probab=92.57  E-value=0.6  Score=42.93  Aligned_cols=39  Identities=18%  Similarity=0.358  Sum_probs=30.4

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeC-CcccH
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATS-STRNL  271 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~-~~~~~  271 (392)
                      .|++++|+||++++|...+..... .|++++++.+ ++++.
T Consensus         7 ~~k~vlItGas~gIG~~ia~~l~~-~G~~v~~~~~~~~~~~   46 (260)
T PRK08416          7 KGKTLVISGGTRGIGKAIVYEFAQ-SGVNIAFTYNSNVEEA   46 (260)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHH-CCCEEEEEcCCCHHHH
Confidence            578999999999999998876666 4999887754 44443

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase

Probab=92.55  E-value=2.2  Score=39.67  Aligned_cols=96  Identities=22%  Similarity=0.239  Sum_probs=58.6

Q ss_pred             hcCCCCCCeEEEEcCCCcHHHHHHHHHHHhc-CCeEEEEeCCcccHHHHH----hcCCcEE--EeCCCCccccCCCCccE
Q 016265          227 RTGFSAGKSILVLNGSGGVGSLVIQLAKQVF-GASRVAATSSTRNLEFLK----SLGADLA--IDYTKDNFEDLPEKFDV  299 (392)
Q Consensus       227 ~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~-G~~vv~~~~~~~~~~~~~----~~G~~~v--i~~~~~~~~~~~~~~D~  299 (392)
                      ...+++|++||=.| +| .|-.++.++..+. ...++.++.++.+++.++    ++|.+.+  +..+...+....+.||+
T Consensus        66 ~l~~~~g~~VLDl~-ag-~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~  143 (264)
T TIGR00446        66 ALEPDPPERVLDMA-AA-PGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKFDA  143 (264)
T ss_pred             HhCCCCcCEEEEEC-CC-chHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCCCE
Confidence            34678999888776 44 4555566666532 247888899999887663    4565432  22222222222345998


Q ss_pred             EEe---cCcc----------------------------HHHHHHhcccCCeEEEEc
Q 016265          300 VYD---AIGQ----------------------------CDRAVKAIKEGGTVVALT  324 (392)
Q Consensus       300 vid---~~G~----------------------------~~~~~~~l~~~G~iv~~g  324 (392)
                      |+-   |+|.                            +..+++++++||+++...
T Consensus       144 Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYst  199 (264)
T TIGR00446       144 ILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYST  199 (264)
T ss_pred             EEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence            873   3331                            246778899999997553

>PRK14902 16S rRNA methyltransferase B; Provisional

Probab=92.54  E-value=1.5  Score=43.98  Aligned_cols=95  Identities=19%  Similarity=0.268  Sum_probs=58.4

Q ss_pred             hcCCCCCCeEEEEcCCCcHHHHHHHHHHHh-cCCeEEEEeCCcccHHHHH----hcCCcE--EEeCCCCccc-cCCCCcc
Q 016265          227 RTGFSAGKSILVLNGSGGVGSLVIQLAKQV-FGASRVAATSSTRNLEFLK----SLGADL--AIDYTKDNFE-DLPEKFD  298 (392)
Q Consensus       227 ~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~-~G~~vv~~~~~~~~~~~~~----~~G~~~--vi~~~~~~~~-~~~~~~D  298 (392)
                      ...+++|++||=.| + +.|..++.+++.+ .+.+++.++.++++++.++    ++|.+.  ++..+..... ...+.||
T Consensus       245 ~l~~~~g~~VLDlg-a-G~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~~fD  322 (444)
T PRK14902        245 ALDPKGGDTVLDAC-A-APGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFAEKFD  322 (444)
T ss_pred             HhCCCCCCEEEEeC-C-CCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhcccCC
Confidence            44678889888776 3 3455666677653 1457888898988877664    456543  2222211111 1235799


Q ss_pred             EEEe---cCcc----------------------------HHHHHHhcccCCeEEEE
Q 016265          299 VVYD---AIGQ----------------------------CDRAVKAIKEGGTVVAL  323 (392)
Q Consensus       299 ~vid---~~G~----------------------------~~~~~~~l~~~G~iv~~  323 (392)
                      +|+-   |+|.                            +..+.++|++||+++..
T Consensus       323 ~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvys  378 (444)
T PRK14902        323 KILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYS  378 (444)
T ss_pred             EEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence            8873   3331                            35677889999999854

>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=92.53  E-value=0.84  Score=43.10  Aligned_cols=94  Identities=21%  Similarity=0.180  Sum_probs=64.2

Q ss_pred             ccchhHHHHHHHHHhcCC-CCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEe-CCcccHHHHHhcCCcEEEeCCCCcc
Q 016265          213 GLPLAIETAYEGLERTGF-SAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAAT-SSTRNLEFLKSLGADLAIDYTKDNF  290 (392)
Q Consensus       213 ~l~~~~~ta~~al~~~~~-~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~-~~~~~~~~~~~~G~~~vi~~~~~~~  290 (392)
                      .+||+....+..|+..++ -.|.+|+|+|-++.+|.-.+.++.. .|+.|.+.. ++. .                   .
T Consensus       137 ~~PcTp~ai~~ll~~~~i~~~Gk~V~viGrs~~mG~PmA~~L~~-~g~tVtv~~~rT~-~-------------------l  195 (296)
T PRK14188        137 LVPCTPLGCMMLLRRVHGDLSGLNAVVIGRSNLVGKPMAQLLLA-ANATVTIAHSRTR-D-------------------L  195 (296)
T ss_pred             CcCCCHHHHHHHHHHhCCCCCCCEEEEEcCCcchHHHHHHHHHh-CCCEEEEECCCCC-C-------------------H
Confidence            356665555556665554 4799999999999999988888776 499888774 332 1                   1


Q ss_pred             ccCCCCccEEEecCccHHHHHH-hcccCCeEEEEcCCC
Q 016265          291 EDLPEKFDVVYDAIGQCDRAVK-AIKEGGTVVALTGAV  327 (392)
Q Consensus       291 ~~~~~~~D~vid~~G~~~~~~~-~l~~~G~iv~~g~~~  327 (392)
                      .+..+..|+|+-|+|..+..-. .+++|..++.+|...
T Consensus       196 ~e~~~~ADIVIsavg~~~~v~~~~lk~GavVIDvGin~  233 (296)
T PRK14188        196 PAVCRRADILVAAVGRPEMVKGDWIKPGATVIDVGINR  233 (296)
T ss_pred             HHHHhcCCEEEEecCChhhcchheecCCCEEEEcCCcc
Confidence            2233467999999985322211 388988888888654

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=92.50  E-value=0.99  Score=46.79  Aligned_cols=70  Identities=17%  Similarity=0.166  Sum_probs=53.3

Q ss_pred             CeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEe-CCCCcc-cc-CCCCccEEEecCc
Q 016265          234 KSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAID-YTKDNF-ED-LPEKFDVVYDAIG  305 (392)
Q Consensus       234 ~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~-~~~~~~-~~-~~~~~D~vid~~G  305 (392)
                      ++++|.| .|.+|+..++..+. .|.++++++.++++.+.+++.|...+.- ..+++. ++ ..+.+|.++-+++
T Consensus       418 ~hiiI~G-~G~~G~~la~~L~~-~g~~vvvId~d~~~~~~~~~~g~~~i~GD~~~~~~L~~a~i~~a~~viv~~~  490 (558)
T PRK10669        418 NHALLVG-YGRVGSLLGEKLLA-AGIPLVVIETSRTRVDELRERGIRAVLGNAANEEIMQLAHLDCARWLLLTIP  490 (558)
T ss_pred             CCEEEEC-CChHHHHHHHHHHH-CCCCEEEEECCHHHHHHHHHCCCeEEEcCCCCHHHHHhcCccccCEEEEEcC
Confidence            6889998 99999999999887 5999999999999999999988665542 222221 22 2357898887766

>PRK07370 enoyl-(acyl carrier protein) reductase; Validated

Probab=92.50  E-value=0.46  Score=43.80  Aligned_cols=34  Identities=21%  Similarity=0.080  Sum_probs=26.8

Q ss_pred             CCCeEEEEcCC--CcHHHHHHHHHHHhcCCeEEEEeC
Q 016265          232 AGKSILVLNGS--GGVGSLVIQLAKQVFGASRVAATS  266 (392)
Q Consensus       232 ~g~~VlI~Ga~--G~vG~~aiqlak~~~G~~vv~~~~  266 (392)
                      .|++++|+||+  +++|.+.+..... .|++|+++.+
T Consensus         5 ~~k~~lItGas~~~GIG~aia~~la~-~G~~v~~~~~   40 (258)
T PRK07370          5 TGKKALVTGIANNRSIAWGIAQQLHA-AGAELGITYL   40 (258)
T ss_pred             CCcEEEEeCCCCCCchHHHHHHHHHH-CCCEEEEEec
Confidence            47899999975  7999997776655 4999887754

>PRK09186 flagellin modification protein A; Provisional

Probab=92.49  E-value=0.29  Score=44.74  Aligned_cols=42  Identities=29%  Similarity=0.411  Sum_probs=34.3

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHH
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFL  274 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~  274 (392)
                      .|.+|+|+||+|++|...+..+.. .|++++++.+++++.+.+
T Consensus         3 ~~k~vlItGas~giG~~~a~~l~~-~g~~v~~~~r~~~~~~~~   44 (256)
T PRK09186          3 KGKTILITGAGGLIGSALVKAILE-AGGIVIAADIDKEALNEL   44 (256)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHH-CCCEEEEEecChHHHHHH
Confidence            478999999999999998877766 599999888877765443

>PLN02896 cinnamyl-alcohol dehydrogenase

Probab=92.49  E-value=0.53  Score=45.56  Aligned_cols=74  Identities=22%  Similarity=0.266  Sum_probs=46.4

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHH-Hhc--CCc-EEE--eCCC-CccccCCCCccEEEec
Q 016265          231 SAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFL-KSL--GAD-LAI--DYTK-DNFEDLPEKFDVVYDA  303 (392)
Q Consensus       231 ~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~-~~~--G~~-~vi--~~~~-~~~~~~~~~~D~vid~  303 (392)
                      ..+.+|||+||+|.+|...++.+.. .|.+|++++++..+.+.+ ..+  +.. .++  |..+ ..+.+..+++|+||.+
T Consensus         8 ~~~~~vLVtG~~GfIG~~l~~~L~~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih~   86 (353)
T PLN02896          8 SATGTYCVTGATGYIGSWLVKLLLQ-RGYTVHATLRDPAKSLHLLSKWKEGDRLRLFRADLQEEGSFDEAVKGCDGVFHV   86 (353)
T ss_pred             cCCCEEEEECCCcHHHHHHHHHHHH-CCCEEEEEeCChHHHHHHHHhhccCCeEEEEECCCCCHHHHHHHHcCCCEEEEC
Confidence            4577999999999999998887776 499999888765544332 222  111 122  2111 1122333468888887


Q ss_pred             Cc
Q 016265          304 IG  305 (392)
Q Consensus       304 ~G  305 (392)
                      .+
T Consensus        87 A~   88 (353)
T PLN02896         87 AA   88 (353)
T ss_pred             Cc
Confidence            64

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=92.48  E-value=2.4  Score=40.69  Aligned_cols=38  Identities=24%  Similarity=0.179  Sum_probs=30.7

Q ss_pred             CeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHH
Q 016265          234 KSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEF  273 (392)
Q Consensus       234 ~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~  273 (392)
                      .+|.|+| +|.+|...++.+.. .|.+|++.+.+++.++.
T Consensus         8 ~~VaVIG-aG~MG~giA~~~a~-aG~~V~l~D~~~~~~~~   45 (321)
T PRK07066          8 KTFAAIG-SGVIGSGWVARALA-HGLDVVAWDPAPGAEAA   45 (321)
T ss_pred             CEEEEEC-cCHHHHHHHHHHHh-CCCeEEEEeCCHHHHHH
Confidence            5799998 99999887777666 59999999988776544

>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional

Probab=92.46  E-value=0.65  Score=49.84  Aligned_cols=67  Identities=22%  Similarity=0.320  Sum_probs=50.2

Q ss_pred             CeEEEEcCCCcHHHHHHHHHHHhcC--CeEEEEeCCcccHHHHHhcCCcEEEeCCCCccccCCCCccEEEecCc
Q 016265          234 KSILVLNGSGGVGSLVIQLAKQVFG--ASRVAATSSTRNLEFLKSLGADLAIDYTKDNFEDLPEKFDVVYDAIG  305 (392)
Q Consensus       234 ~~VlI~Ga~G~vG~~aiqlak~~~G--~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~~~~~~~D~vid~~G  305 (392)
                      ++|.|+| .|.+|.+.++.++. .|  .++++.++++++.+.++++|+.   +....+..+..+..|+||.|+.
T Consensus         4 ~~I~IIG-~G~mG~ala~~l~~-~G~~~~V~~~d~~~~~~~~a~~~g~~---~~~~~~~~~~~~~aDvVilavp   72 (735)
T PRK14806          4 GRVVVIG-LGLIGGSFAKALRE-RGLAREVVAVDRRAKSLELAVSLGVI---DRGEEDLAEAVSGADVIVLAVP   72 (735)
T ss_pred             cEEEEEe-eCHHHHHHHHHHHh-cCCCCEEEEEECChhHHHHHHHCCCC---CcccCCHHHHhcCCCEEEECCC
Confidence            6799998 99999999998887 47  4678888888888888888853   1112223333457899999987

>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]

Probab=92.36  E-value=1.1  Score=39.93  Aligned_cols=72  Identities=22%  Similarity=0.340  Sum_probs=47.3

Q ss_pred             CCeEEEEcC-CCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHH-hcCCc-EEEeCCCCc-ccc--------CCCCccEE
Q 016265          233 GKSILVLNG-SGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLK-SLGAD-LAIDYTKDN-FED--------LPEKFDVV  300 (392)
Q Consensus       233 g~~VlI~Ga-~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~-~~G~~-~vi~~~~~~-~~~--------~~~~~D~v  300 (392)
                      ...|||.|. .||+|.+.+.-... .|+.|+++.++-++...+. ++|.. .-+|..+++ ..+        -.++.|+.
T Consensus         7 ~k~VlItgcs~GGIG~ala~ef~~-~G~~V~AtaR~~e~M~~L~~~~gl~~~kLDV~~~~~V~~v~~evr~~~~Gkld~L   85 (289)
T KOG1209|consen    7 PKKVLITGCSSGGIGYALAKEFAR-NGYLVYATARRLEPMAQLAIQFGLKPYKLDVSKPEEVVTVSGEVRANPDGKLDLL   85 (289)
T ss_pred             CCeEEEeecCCcchhHHHHHHHHh-CCeEEEEEccccchHhhHHHhhCCeeEEeccCChHHHHHHHHHHhhCCCCceEEE
Confidence            457888865 79999986655444 5999999999888877775 77732 233433322 111        12457888


Q ss_pred             EecCc
Q 016265          301 YDAIG  305 (392)
Q Consensus       301 id~~G  305 (392)
                      ++..|
T Consensus        86 ~NNAG   90 (289)
T KOG1209|consen   86 YNNAG   90 (289)
T ss_pred             EcCCC
Confidence            88766

>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated

Probab=92.36  E-value=0.46  Score=46.01  Aligned_cols=92  Identities=21%  Similarity=0.154  Sum_probs=51.7

Q ss_pred             CeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHH-HhcC-CcE--EEeCCCCccccCCCCccEEEecCcc---
Q 016265          234 KSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFL-KSLG-ADL--AIDYTKDNFEDLPEKFDVVYDAIGQ---  306 (392)
Q Consensus       234 ~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~-~~~G-~~~--vi~~~~~~~~~~~~~~D~vid~~G~---  306 (392)
                      -+|+|+|++|.+|...++++...-+.+++.+.+...+.+.+ +.++ ...  ...+.+.+.. ...++|+||-|++.   
T Consensus         3 ~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~-~~~~vD~Vf~alP~~~~   81 (343)
T PRK00436          3 IKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRSSAGKPLSDVHPHLRGLVDLVLEPLDPE-ILAGADVVFLALPHGVS   81 (343)
T ss_pred             eEEEEECCCCHHHHHHHHHHHcCCCceEEEEECccccCcchHHhCcccccccCceeecCCHH-HhcCCCEEEECCCcHHH
Confidence            37999999999999887777653356766665532222222 2222 100  0011111111 22468999999873   


Q ss_pred             HHHHHHhcccCCeEEEEcCC
Q 016265          307 CDRAVKAIKEGGTVVALTGA  326 (392)
Q Consensus       307 ~~~~~~~l~~~G~iv~~g~~  326 (392)
                      .+.+..+++.|-.+|+.++.
T Consensus        82 ~~~v~~a~~aG~~VID~S~~  101 (343)
T PRK00436         82 MDLAPQLLEAGVKVIDLSAD  101 (343)
T ss_pred             HHHHHHHHhCCCEEEECCcc
Confidence            35555555656567777644

>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]

Probab=92.30  E-value=1.3  Score=41.68  Aligned_cols=85  Identities=19%  Similarity=0.251  Sum_probs=58.1

Q ss_pred             eEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCccc-HHHHHhcCCcEEEeCCCCccccCCCCccEEEecCccH------
Q 016265          235 SILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRN-LEFLKSLGADLAIDYTKDNFEDLPEKFDVVYDAIGQC------  307 (392)
Q Consensus       235 ~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~-~~~~~~~G~~~vi~~~~~~~~~~~~~~D~vid~~G~~------  307 (392)
                      +|.++| .|-+|.-.++=+.. .|..+.+.++++++ .+.+++.|+...-+     ..+.....|+||-|++.-      
T Consensus         2 kIafIG-LG~MG~pmA~~L~~-aG~~v~v~~r~~~ka~~~~~~~Ga~~a~s-----~~eaa~~aDvVitmv~~~~~V~~V   74 (286)
T COG2084           2 KIAFIG-LGIMGSPMAANLLK-AGHEVTVYNRTPEKAAELLAAAGATVAAS-----PAEAAAEADVVITMLPDDAAVRAV   74 (286)
T ss_pred             eEEEEc-CchhhHHHHHHHHH-CCCEEEEEeCChhhhhHHHHHcCCcccCC-----HHHHHHhCCEEEEecCCHHHHHHH
Confidence            578888 99999775555555 39999999999998 88888888754321     233345678888887621      


Q ss_pred             ----HHHHHhcccCCeEEEEcCC
Q 016265          308 ----DRAVKAIKEGGTVVALTGA  326 (392)
Q Consensus       308 ----~~~~~~l~~~G~iv~~g~~  326 (392)
                          +-.++.+++|..+|.++..
T Consensus        75 ~~g~~g~~~~~~~G~i~IDmSTi   97 (286)
T COG2084          75 LFGENGLLEGLKPGAIVIDMSTI   97 (286)
T ss_pred             HhCccchhhcCCCCCEEEECCCC
Confidence                2344556677777776543

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=92.29  E-value=0.61  Score=40.74  Aligned_cols=89  Identities=25%  Similarity=0.369  Sum_probs=55.8

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHH----HhcCCcE--EEeCCCCccccCCCCccEEEecC-
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFL----KSLGADL--AIDYTKDNFEDLPEKFDVVYDAI-  304 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~----~~~G~~~--vi~~~~~~~~~~~~~~D~vid~~-  304 (392)
                      .|++||=+| + |.|..++.+++...+++++.++.+++..+.+    ++.|.+.  ++..+-.++ ...+.+|+|+-.. 
T Consensus        42 ~~~~vLDiG-c-GtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~-~~~~~fD~I~s~~~  118 (181)
T TIGR00138        42 DGKKVIDIG-S-GAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDF-QHEEQFDVITSRAL  118 (181)
T ss_pred             CCCeEEEec-C-CCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhc-cccCCccEEEehhh
Confidence            388999887 3 3467777777652246788899888766554    3455432  222222222 1235799888542 


Q ss_pred             cc----HHHHHHhcccCCeEEEE
Q 016265          305 GQ----CDRAVKAIKEGGTVVAL  323 (392)
Q Consensus       305 G~----~~~~~~~l~~~G~iv~~  323 (392)
                      ..    ++.+.++|++||+++..
T Consensus       119 ~~~~~~~~~~~~~LkpgG~lvi~  141 (181)
T TIGR00138       119 ASLNVLLELTLNLLKVGGYFLAY  141 (181)
T ss_pred             hCHHHHHHHHHHhcCCCCEEEEE
Confidence            22    36678889999998865

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=92.27  E-value=0.97  Score=41.22  Aligned_cols=95  Identities=17%  Similarity=0.194  Sum_probs=60.0

Q ss_pred             hcCCCCCCeEEEEcCCCcHHHHHHHHHHHhc-CCeEEEEeCCcccHHHHH----hcCCcEEEeCCCCcc----ccC----
Q 016265          227 RTGFSAGKSILVLNGSGGVGSLVIQLAKQVF-GASRVAATSSTRNLEFLK----SLGADLAIDYTKDNF----EDL----  293 (392)
Q Consensus       227 ~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~-G~~vv~~~~~~~~~~~~~----~~G~~~vi~~~~~~~----~~~----  293 (392)
                      ..+..++++||=+|  .+.|..++.+|+.+. +.+++.++.+++..+.++    +.|.+.-+.....+.    .++    
T Consensus        63 l~~~~~~~~vLEiG--t~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~  140 (234)
T PLN02781         63 LVKIMNAKNTLEIG--VFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNND  140 (234)
T ss_pred             HHHHhCCCEEEEec--CcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCC
Confidence            34556678999987  356777777777643 357888888888777664    345432222211111    111    


Q ss_pred             -CCCccEEEecCc------cHHHHHHhcccCCeEEEE
Q 016265          294 -PEKFDVVYDAIG------QCDRAVKAIKEGGTVVAL  323 (392)
Q Consensus       294 -~~~~D~vid~~G------~~~~~~~~l~~~G~iv~~  323 (392)
                       .+.||+||--..      -++.+++++++||.++.-
T Consensus       141 ~~~~fD~VfiDa~k~~y~~~~~~~~~ll~~GG~ii~d  177 (234)
T PLN02781        141 PKPEFDFAFVDADKPNYVHFHEQLLKLVKVGGIIAFD  177 (234)
T ss_pred             CCCCCCEEEECCCHHHHHHHHHHHHHhcCCCeEEEEE
Confidence             347999884432      257889999999988753

>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase

Probab=92.23  E-value=0.36  Score=46.29  Aligned_cols=73  Identities=18%  Similarity=0.138  Sum_probs=44.4

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcC--CeEEEEeCCcccHHHH-HhcCC-c-EEE--eCCCC-ccccCCCCccEEEec
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFG--ASRVAATSSTRNLEFL-KSLGA-D-LAI--DYTKD-NFEDLPEKFDVVYDA  303 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G--~~vv~~~~~~~~~~~~-~~~G~-~-~vi--~~~~~-~~~~~~~~~D~vid~  303 (392)
                      .|.+|||+||+|.+|...+..+... |  .+|++.+++..+...+ +.+.. . .++  |..+. .+.+..+++|+||.+
T Consensus         3 ~~k~vLVTGatG~IG~~l~~~L~~~-g~~~~V~~~~r~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~l~~~~~~iD~Vih~   81 (324)
T TIGR03589         3 NNKSILITGGTGSFGKAFISRLLEN-YNPKKIIIYSRDELKQWEMQQKFPAPCLRFFIGDVRDKERLTRALRGVDYVVHA   81 (324)
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHh-CCCcEEEEEcCChhHHHHHHHHhCCCcEEEEEccCCCHHHHHHHHhcCCEEEEC
Confidence            3678999999999999888766553 4  5777777665544333 22321 1 122  32221 122233568999998


Q ss_pred             Cc
Q 016265          304 IG  305 (392)
Q Consensus       304 ~G  305 (392)
                      .|
T Consensus        82 Ag   83 (324)
T TIGR03589        82 AA   83 (324)
T ss_pred             cc
Confidence            76

This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.

>PRK05599 hypothetical protein; Provisional

Probab=92.20  E-value=0.58  Score=42.73  Aligned_cols=69  Identities=23%  Similarity=0.330  Sum_probs=44.9

Q ss_pred             eEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHH----HhcCCc--EEE--eCCCCc-cc-------cCCCCcc
Q 016265          235 SILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFL----KSLGAD--LAI--DYTKDN-FE-------DLPEKFD  298 (392)
Q Consensus       235 ~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~----~~~G~~--~vi--~~~~~~-~~-------~~~~~~D  298 (392)
                      +++|+||++++|.+.+....  .|.+|+++.+++++++.+    ++.|.+  .++  |..+.. ..       +..+++|
T Consensus         2 ~vlItGas~GIG~aia~~l~--~g~~Vil~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~id   79 (246)
T PRK05599          2 SILILGGTSDIAGEIATLLC--HGEDVVLAARRPEAAQGLASDLRQRGATSVHVLSFDAQDLDTHRELVKQTQELAGEIS   79 (246)
T ss_pred             eEEEEeCccHHHHHHHHHHh--CCCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEcccCCHHHHHHHHHHHHHhcCCCC
Confidence            68999999999999877654  389999998887776544    333432  222  322211 11       1134689


Q ss_pred             EEEecCc
Q 016265          299 VVYDAIG  305 (392)
Q Consensus       299 ~vid~~G  305 (392)
                      +++.+.|
T Consensus        80 ~lv~nag   86 (246)
T PRK05599         80 LAVVAFG   86 (246)
T ss_pred             EEEEecC
Confidence            9998876

>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional

Probab=92.20  E-value=0.33  Score=44.24  Aligned_cols=42  Identities=21%  Similarity=0.308  Sum_probs=34.8

Q ss_pred             CCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHH
Q 016265          230 FSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLE  272 (392)
Q Consensus       230 ~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~  272 (392)
                      ..++.+|+|+|++|++|...++.+.. .|++|++++++.++.+
T Consensus         9 ~~~~k~vlItG~~g~iG~~la~~l~~-~G~~Vi~~~r~~~~~~   50 (247)
T PRK08945          9 LLKDRIILVTGAGDGIGREAALTYAR-HGATVILLGRTEEKLE   50 (247)
T ss_pred             ccCCCEEEEeCCCchHHHHHHHHHHH-CCCcEEEEeCCHHHHH
Confidence            45788999999999999998887766 4999999988776543

>PRK12749 quinate/shikimate dehydrogenase; Reviewed

Probab=92.18  E-value=0.79  Score=43.22  Aligned_cols=72  Identities=13%  Similarity=0.212  Sum_probs=41.2

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCC-eEEEEeCCcc---cHHH-HHhcCCc----E-EEeCCCC-ccccCCCCccEE
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGA-SRVAATSSTR---NLEF-LKSLGAD----L-AIDYTKD-NFEDLPEKFDVV  300 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~-~vv~~~~~~~---~~~~-~~~~G~~----~-vi~~~~~-~~~~~~~~~D~v  300 (392)
                      .+.+++|+| +|+.+.+++..+.. .|+ ++.++.++++   |.+. +++++..    . +....+. .+.+....+|+|
T Consensus       123 ~~k~vlvlG-aGGaarAi~~~l~~-~g~~~i~i~nRt~~~~~ka~~la~~~~~~~~~~~~~~~~~~~~~l~~~~~~aDiv  200 (288)
T PRK12749        123 KGKTMVLLG-AGGASTAIGAQGAI-EGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLADQQAFAEALASADIL  200 (288)
T ss_pred             CCCEEEEEC-CcHHHHHHHHHHHH-CCCCEEEEEeCCccHHHHHHHHHHHhhhccCceEEEechhhhhhhhhhcccCCEE
Confidence            567999998 78889876665544 376 5667777643   4333 3344321    1 1111111 122233578999


Q ss_pred             EecCc
Q 016265          301 YDAIG  305 (392)
Q Consensus       301 id~~G  305 (392)
                      |+|+.
T Consensus       201 INaTp  205 (288)
T PRK12749        201 TNGTK  205 (288)
T ss_pred             EECCC
Confidence            99974

>TIGR03466 HpnA hopanoid-associated sugar epimerase

Probab=92.18  E-value=0.2  Score=47.63  Aligned_cols=70  Identities=19%  Similarity=0.263  Sum_probs=46.7

Q ss_pred             eEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEE-EeCCC-CccccCCCCccEEEecCc
Q 016265          235 SILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLA-IDYTK-DNFEDLPEKFDVVYDAIG  305 (392)
Q Consensus       235 ~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~v-i~~~~-~~~~~~~~~~D~vid~~G  305 (392)
                      +|+|+||+|.+|...++.+.. .|.+|+++++++++...+.+.+...+ .|..+ ..+.+..+++|+||++.+
T Consensus         2 ~vlItG~~G~iG~~l~~~L~~-~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~d~vi~~a~   73 (328)
T TIGR03466         2 KVLVTGATGFVGSAVVRLLLE-QGEEVRVLVRPTSDRRNLEGLDVEIVEGDLRDPASLRKAVAGCRALFHVAA   73 (328)
T ss_pred             eEEEECCccchhHHHHHHHHH-CCCEEEEEEecCccccccccCCceEEEeeCCCHHHHHHHHhCCCEEEEece
Confidence            689999999999998887776 48999999887665443333343322 13322 123333457899998864

The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.

>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=92.17  E-value=0.77  Score=43.57  Aligned_cols=35  Identities=23%  Similarity=0.326  Sum_probs=28.8

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCC
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSS  267 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~  267 (392)
                      .|.+++|+||+|++|...++.... .|++|++.+..
T Consensus        11 ~~k~~lVTGas~gIG~~ia~~L~~-~Ga~Vv~~~~~   45 (306)
T PRK07792         11 SGKVAVVTGAAAGLGRAEALGLAR-LGATVVVNDVA   45 (306)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHH-CCCEEEEecCC
Confidence            478999999999999987776655 49998888763

>PRK07578 short chain dehydrogenase; Provisional

Probab=92.15  E-value=1.1  Score=39.19  Aligned_cols=32  Identities=28%  Similarity=0.395  Sum_probs=24.8

Q ss_pred             eEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCc
Q 016265          235 SILVLNGSGGVGSLVIQLAKQVFGASRVAATSST  268 (392)
Q Consensus       235 ~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~  268 (392)
                      +++|+||+|++|...+..... . .+++++.++.
T Consensus         2 ~vlItGas~giG~~la~~l~~-~-~~vi~~~r~~   33 (199)
T PRK07578          2 KILVIGASGTIGRAVVAELSK-R-HEVITAGRSS   33 (199)
T ss_pred             eEEEEcCCcHHHHHHHHHHHh-c-CcEEEEecCC
Confidence            689999999999987776655 3 6777777654

>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=92.13  E-value=0.78  Score=43.01  Aligned_cols=95  Identities=26%  Similarity=0.294  Sum_probs=66.0

Q ss_pred             ccchhHHHHHHHHHhcCC-CCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCCccc
Q 016265          213 GLPLAIETAYEGLERTGF-SAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFE  291 (392)
Q Consensus       213 ~l~~~~~ta~~al~~~~~-~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~  291 (392)
                      .+||........|+..++ -.|.+|+|.|.+.-+|.=.+.++.. .++.|.++......                   ..
T Consensus       137 ~~PcTp~av~~lL~~~~i~l~Gk~vvViGrS~iVG~Pla~lL~~-~~atVt~chs~t~~-------------------l~  196 (284)
T PRK14190        137 FLPCTPHGILELLKEYNIDISGKHVVVVGRSNIVGKPVGQLLLN-ENATVTYCHSKTKN-------------------LA  196 (284)
T ss_pred             CCCCCHHHHHHHHHHcCCCCCCCEEEEECCCCccHHHHHHHHHH-CCCEEEEEeCCchh-------------------HH
Confidence            346665555666666654 4799999999999999998888877 58988876543221                   22


Q ss_pred             cCCCCccEEEecCccHH-HHHHhcccCCeEEEEcCCC
Q 016265          292 DLPEKFDVVYDAIGQCD-RAVKAIKEGGTVVALTGAV  327 (392)
Q Consensus       292 ~~~~~~D~vid~~G~~~-~~~~~l~~~G~iv~~g~~~  327 (392)
                      +..+..|+||-++|... ---+.+++|..++.+|...
T Consensus       197 ~~~~~ADIvI~AvG~p~~i~~~~ik~gavVIDvGi~~  233 (284)
T PRK14190        197 ELTKQADILIVAVGKPKLITADMVKEGAVVIDVGVNR  233 (284)
T ss_pred             HHHHhCCEEEEecCCCCcCCHHHcCCCCEEEEeeccc
Confidence            23346799999998421 2234578999999988654

>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase

Probab=92.05  E-value=0.97  Score=39.79  Aligned_cols=108  Identities=22%  Similarity=0.213  Sum_probs=70.6

Q ss_pred             ccchhHHHHHHHHHhcCC----------CCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEE
Q 016265          213 GLPLAIETAYEGLERTGF----------SAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLA  282 (392)
Q Consensus       213 ~l~~~~~ta~~al~~~~~----------~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~v  282 (392)
                      .+||.....+..|+..++          -.|.+|+|+|-+.-+|.=.+.++.. .|+.|.+++.+.-.. +. ..+ .  
T Consensus        32 ~~PCTp~avi~lL~~~~i~~~~~~~~~~l~GK~vvVIGrS~iVGkPla~lL~~-~~AtVti~~~~~~~~-~~-~~~-~--  105 (197)
T cd01079          32 ILPCTPLAIVKILEFLGIYNKILPYGNRLYGKTITIINRSEVVGRPLAALLAN-DGARVYSVDINGIQV-FT-RGE-S--  105 (197)
T ss_pred             ccCCCHHHHHHHHHHhCCcccccccCCCCCCCEEEEECCCccchHHHHHHHHH-CCCEEEEEecCcccc-cc-ccc-c--
Confidence            356666556666665543          5799999999999999998888877 599998885432111 00 000 0  


Q ss_pred             EeCCC---Cc----cccCCCCccEEEecCccHH--HHHHhcccCCeEEEEcCC
Q 016265          283 IDYTK---DN----FEDLPEKFDVVYDAIGQCD--RAVKAIKEGGTVVALTGA  326 (392)
Q Consensus       283 i~~~~---~~----~~~~~~~~D~vid~~G~~~--~~~~~l~~~G~iv~~g~~  326 (392)
                      +....   .+    ..+..+..|+||-++|..+  ---+.+++|..++.+|..
T Consensus       106 ~~hs~t~~~~~~~~l~~~~~~ADIVIsAvG~~~~~i~~d~ik~GavVIDVGi~  158 (197)
T cd01079         106 IRHEKHHVTDEEAMTLDCLSQSDVVITGVPSPNYKVPTELLKDGAICINFASI  158 (197)
T ss_pred             cccccccccchhhHHHHHhhhCCEEEEccCCCCCccCHHHcCCCcEEEEcCCC
Confidence            01110   01    3344568899999999533  345689999999998854

The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional

>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=92.05  E-value=0.82  Score=42.88  Aligned_cols=95  Identities=23%  Similarity=0.252  Sum_probs=66.2

Q ss_pred             ccchhHHHHHHHHHhcCCC-CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCCccc
Q 016265          213 GLPLAIETAYEGLERTGFS-AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFE  291 (392)
Q Consensus       213 ~l~~~~~ta~~al~~~~~~-~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~  291 (392)
                      .+||.....+.-|+..++. .|.+|+|+|.+.-+|.=.+.++.. .++.|.++-+....                   ..
T Consensus       134 ~~PcTp~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~-~~aTVtichs~T~~-------------------l~  193 (287)
T PRK14173        134 LEPCTPAGVVRLLKHYGIPLAGKEVVVVGRSNIVGKPLAALLLR-EDATVTLAHSKTQD-------------------LP  193 (287)
T ss_pred             CCCCCHHHHHHHHHHcCCCCCCCEEEEECCCCccHHHHHHHHHH-CCCEEEEeCCCCCC-------------------HH
Confidence            3466655556666666654 699999999999999998888877 48877766443222                   22


Q ss_pred             cCCCCccEEEecCccHH-HHHHhcccCCeEEEEcCCC
Q 016265          292 DLPEKFDVVYDAIGQCD-RAVKAIKEGGTVVALTGAV  327 (392)
Q Consensus       292 ~~~~~~D~vid~~G~~~-~~~~~l~~~G~iv~~g~~~  327 (392)
                      +..+..|+|+-++|... .--+.+++|..++.+|...
T Consensus       194 ~~~~~ADIvIsAvGkp~~i~~~~vk~GavVIDVGin~  230 (287)
T PRK14173        194 AVTRRADVLVVAVGRPHLITPEMVRPGAVVVDVGINR  230 (287)
T ss_pred             HHHhhCCEEEEecCCcCccCHHHcCCCCEEEEccCcc
Confidence            33446799999998321 2345688999999988654

>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II

Probab=92.04  E-value=1.8  Score=41.68  Aligned_cols=93  Identities=24%  Similarity=0.171  Sum_probs=55.3

Q ss_pred             EEEEcCCCcHHHHHHHHHHHhcCCeEEEEeC-CcccH-HHHHhcCCcEEEeCCC-------------CccccCCCCccEE
Q 016265          236 ILVLNGSGGVGSLVIQLAKQVFGASRVAATS-STRNL-EFLKSLGADLAIDYTK-------------DNFEDLPEKFDVV  300 (392)
Q Consensus       236 VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~-~~~~~-~~~~~~G~~~vi~~~~-------------~~~~~~~~~~D~v  300 (392)
                      |.|.| .|.+|...+......-+.+++.+.. .+++. .+++.+|.+.+.....             .++.++..++|+|
T Consensus         1 VaInG-~GrIGr~varav~~~~d~elVaVnD~~~~~~a~lA~~lgyds~~~~~~~~~~~~~~~l~v~g~~eeLl~~vDiV   79 (333)
T TIGR01546         1 VGVNG-YGTIGKRVADAVTKQDDMKLVGVTKTSPDFEAYRAKELGIPVYAASEEFIPRFEEAGIEVAGTLEDLLEKVDIV   79 (333)
T ss_pred             CEEEC-CcHHHHHHHHHHhhCCCcEEEEEecCChHHHHHHHHHhCCCEEeecCCcceEeccCceEecCCHHHHhhcCCEE
Confidence            56887 9999998777765434567776644 33333 3445677665431111             1233344679999


Q ss_pred             EecCcc---HHHHHHhcccCCeEEEEcCCCCC
Q 016265          301 YDAIGQ---CDRAVKAIKEGGTVVALTGAVTP  329 (392)
Q Consensus       301 id~~G~---~~~~~~~l~~~G~iv~~g~~~~~  329 (392)
                      ++|++.   ....-..++.|-+-+.++++...
T Consensus        80 ve~Tp~~~~~~na~~~~~~GakaVl~~~p~~~  111 (333)
T TIGR01546        80 VDATPGGIGAKNKPLYEKAGVKAIFQGGEKAE  111 (333)
T ss_pred             EECCCCCCChhhHHHHHhCCcCEEEECCCCCC
Confidence            999983   33344445555566777776543

All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.

>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)

Probab=92.02  E-value=0.9  Score=42.87  Aligned_cols=95  Identities=28%  Similarity=0.266  Sum_probs=66.1

Q ss_pred             ccchhHHHHHHHHHhcCC-CCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCCccc
Q 016265          213 GLPLAIETAYEGLERTGF-SAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFE  291 (392)
Q Consensus       213 ~l~~~~~ta~~al~~~~~-~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~  291 (392)
                      .+||.....+.-|+..++ -.|.+|+|+|-+.-+|.=.+.++.. .++.|.++-.....                   ..
T Consensus       146 ~~PcTp~avi~lL~~~~i~l~Gk~vvVIGRS~iVGkPla~lL~~-~~ATVtvchs~T~n-------------------l~  205 (299)
T PLN02516        146 FLPCTPKGCLELLSRSGIPIKGKKAVVVGRSNIVGLPVSLLLLK-ADATVTVVHSRTPD-------------------PE  205 (299)
T ss_pred             CCCCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHH-CCCEEEEeCCCCCC-------------------HH
Confidence            456666556666665543 3599999999999999998888877 48877777543222                   22


Q ss_pred             cCCCCccEEEecCccH-HHHHHhcccCCeEEEEcCCC
Q 016265          292 DLPEKFDVVYDAIGQC-DRAVKAIKEGGTVVALTGAV  327 (392)
Q Consensus       292 ~~~~~~D~vid~~G~~-~~~~~~l~~~G~iv~~g~~~  327 (392)
                      +..+..|+++-++|.. ----+.+++|..++.+|...
T Consensus       206 ~~~~~ADIvv~AvGk~~~i~~~~vk~gavVIDvGin~  242 (299)
T PLN02516        206 SIVREADIVIAAAGQAMMIKGDWIKPGAAVIDVGTNA  242 (299)
T ss_pred             HHHhhCCEEEEcCCCcCccCHHHcCCCCEEEEeeccc
Confidence            3345679999999842 12245789999999988654

>COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]

Probab=92.01  E-value=0.31  Score=45.01  Aligned_cols=64  Identities=17%  Similarity=0.181  Sum_probs=44.8

Q ss_pred             EEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCCccccCCC-CccEEEecCc
Q 016265          236 ILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFEDLPE-KFDVVYDAIG  305 (392)
Q Consensus       236 VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~~~~~-~~D~vid~~G  305 (392)
                      |+|.||+|-||...++..+. .|-.++++++++.+.+........     ..+.+.+... ++|+||+-.|
T Consensus         1 IliTGgTGlIG~~L~~~L~~-~gh~v~iltR~~~~~~~~~~~~v~-----~~~~~~~~~~~~~DavINLAG   65 (297)
T COG1090           1 ILITGGTGLIGRALTARLRK-GGHQVTILTRRPPKASQNLHPNVT-----LWEGLADALTLGIDAVINLAG   65 (297)
T ss_pred             CeEeccccchhHHHHHHHHh-CCCeEEEEEcCCcchhhhcCcccc-----ccchhhhcccCCCCEEEECCC
Confidence            68999999999999998887 588999999988776543222111     1112222222 7999999888

>PRK08936 glucose-1-dehydrogenase; Provisional

Probab=91.99  E-value=0.75  Score=42.24  Aligned_cols=36  Identities=25%  Similarity=0.282  Sum_probs=29.9

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCc
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSST  268 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~  268 (392)
                      .+.+++|+||+|++|...++.... .|++++++.++.
T Consensus         6 ~~k~~lItGa~~gIG~~ia~~l~~-~G~~vvi~~~~~   41 (261)
T PRK08936          6 EGKVVVITGGSTGLGRAMAVRFGK-EKAKVVINYRSD   41 (261)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHH-CCCEEEEEeCCC
Confidence            578999999999999998887766 599888876643

>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional

Probab=91.99  E-value=0.74  Score=42.37  Aligned_cols=35  Identities=29%  Similarity=0.310  Sum_probs=28.4

Q ss_pred             CCCeEEEEcC--CCcHHHHHHHHHHHhcCCeEEEEeCC
Q 016265          232 AGKSILVLNG--SGGVGSLVIQLAKQVFGASRVAATSS  267 (392)
Q Consensus       232 ~g~~VlI~Ga--~G~vG~~aiqlak~~~G~~vv~~~~~  267 (392)
                      .|++++|+||  ++++|.+.++.... .|++|+++.++
T Consensus         6 ~~k~~lItGa~~s~GIG~a~a~~la~-~G~~v~l~~r~   42 (256)
T PRK07889          6 EGKRILVTGVITDSSIAFHVARVAQE-QGAEVVLTGFG   42 (256)
T ss_pred             cCCEEEEeCCCCcchHHHHHHHHHHH-CCCEEEEecCc
Confidence            4689999998  79999998776655 49998888764

>COG4122 Predicted O-methyltransferase [General function prediction only]

Probab=91.98  E-value=1.3  Score=39.97  Aligned_cols=94  Identities=23%  Similarity=0.333  Sum_probs=64.2

Q ss_pred             cCCCCCCeEEEEcCCCcHHHHHHHHHHHhc-CCeEEEEeCCcccHHHHH----hcCCcEEEeCCC-Cc----ccc-CCCC
Q 016265          228 TGFSAGKSILVLNGSGGVGSLVIQLAKQVF-GASRVAATSSTRNLEFLK----SLGADLAIDYTK-DN----FED-LPEK  296 (392)
Q Consensus       228 ~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~-G~~vv~~~~~~~~~~~~~----~~G~~~vi~~~~-~~----~~~-~~~~  296 (392)
                      ++.....+||=+|  ..+|..++++|..+. ..+++.++.++++.+.++    +.|.+..+..-. .+    +.+ ..+.
T Consensus        55 ~~~~~~k~iLEiG--T~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~  132 (219)
T COG4122          55 ARLSGPKRILEIG--TAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGS  132 (219)
T ss_pred             HHhcCCceEEEee--cccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCC
Confidence            3455778898887  567999999998864 356777788888877764    467665332111 11    122 2467


Q ss_pred             ccEEE-ecCc-----cHHHHHHhcccCCeEEEE
Q 016265          297 FDVVY-DAIG-----QCDRAVKAIKEGGTVVAL  323 (392)
Q Consensus       297 ~D~vi-d~~G-----~~~~~~~~l~~~G~iv~~  323 (392)
                      ||+|| |+--     -++.++++|++||-+|.=
T Consensus       133 fDliFIDadK~~yp~~le~~~~lLr~GGliv~D  165 (219)
T COG4122         133 FDLVFIDADKADYPEYLERALPLLRPGGLIVAD  165 (219)
T ss_pred             ccEEEEeCChhhCHHHHHHHHHHhCCCcEEEEe
Confidence            99887 4532     268999999999998754

>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional

Probab=91.98  E-value=0.65  Score=42.68  Aligned_cols=93  Identities=16%  Similarity=0.251  Sum_probs=59.0

Q ss_pred             CCCCCeEEEEcCCCcHHHHHHHHHHHh--cCCeEEEEeCCcccHHHHHh----cCCcEEEeCCCCccccC-CCCccEEEe
Q 016265          230 FSAGKSILVLNGSGGVGSLVIQLAKQV--FGASRVAATSSTRNLEFLKS----LGADLAIDYTKDNFEDL-PEKFDVVYD  302 (392)
Q Consensus       230 ~~~g~~VlI~Ga~G~vG~~aiqlak~~--~G~~vv~~~~~~~~~~~~~~----~G~~~vi~~~~~~~~~~-~~~~D~vid  302 (392)
                      +.++.+||-+| +|. |..+..+++.+  .+++++.++.+++-++.+++    .|...-++....++.+. ...+|+++.
T Consensus        54 ~~~~~~vLDlG-cGt-G~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~vv~  131 (247)
T PRK15451         54 VQPGTQVYDLG-CSL-GAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVL  131 (247)
T ss_pred             CCCCCEEEEEc-ccC-CHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCCCCCEEeh
Confidence            56888999998 543 77777777632  36789999999887777654    23221122112222222 235788775


Q ss_pred             cCc-----------cHHHHHHhcccCCeEEEEc
Q 016265          303 AIG-----------QCDRAVKAIKEGGTVVALT  324 (392)
Q Consensus       303 ~~G-----------~~~~~~~~l~~~G~iv~~g  324 (392)
                      ...           .+..+.+.|+|||.++...
T Consensus       132 ~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e  164 (247)
T PRK15451        132 NFTLQFLEPSERQALLDKIYQGLNPGGALVLSE  164 (247)
T ss_pred             hhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence            422           1478888999999998764

>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional

Probab=91.93  E-value=0.69  Score=45.16  Aligned_cols=89  Identities=20%  Similarity=0.247  Sum_probs=57.7

Q ss_pred             CeEEEEcCCCcHHHHHHHHHHHhc-CCeEEEEe--CCcccH-HHHHhcCCcEEEeCCCCcc-------------------
Q 016265          234 KSILVLNGSGGVGSLVIQLAKQVF-GASRVAAT--SSTRNL-EFLKSLGADLAIDYTKDNF-------------------  290 (392)
Q Consensus       234 ~~VlI~Ga~G~vG~~aiqlak~~~-G~~vv~~~--~~~~~~-~~~~~~G~~~vi~~~~~~~-------------------  290 (392)
                      .+|.|+|++|.+|..++.+.+... ..++++++  .+.+++ +.+++++...++-.++...                   
T Consensus         2 k~VaILGsTGSIG~~tL~vi~~~p~~f~VvaLaa~~n~~~l~~q~~~f~p~~v~i~~~~~~~~l~~~l~~~~~~v~~G~~   81 (385)
T PRK05447          2 KRITILGSTGSIGTQTLDVIRRNPDRFRVVALSAGKNVELLAEQAREFRPKYVVVADEEAAKELKEALAAAGIEVLAGEE   81 (385)
T ss_pred             ceEEEEcCChHHHHHHHHHHHhCccccEEEEEEcCCCHHHHHHHHHHhCCCEEEEcCHHHHHHHHHhhccCCceEEEChh
Confidence            479999999999999999887621 35666665  233343 4556788776654432211                   


Q ss_pred             --ccC--CCCccEEEecCc---cHHHHHHhcccCCeEEE
Q 016265          291 --EDL--PEKFDVVYDAIG---QCDRAVKAIKEGGTVVA  322 (392)
Q Consensus       291 --~~~--~~~~D~vid~~G---~~~~~~~~l~~~G~iv~  322 (392)
                        .++  ...+|+|+++++   ++...+.+++.|-++.+
T Consensus        82 ~~~~l~~~~~vD~Vv~Ai~G~aGl~ptl~Ai~aGK~VaL  120 (385)
T PRK05447         82 GLCELAALPEADVVVAAIVGAAGLLPTLAAIRAGKRIAL  120 (385)
T ss_pred             HHHHHhcCCCCCEEEEeCcCcccHHHHHHHHHCCCcEEE
Confidence              000  125899999964   46778888877766543

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=91.91  E-value=0.52  Score=49.81  Aligned_cols=73  Identities=21%  Similarity=0.381  Sum_probs=51.1

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcc---------------------cHHHHHhcCCcEEEeCCC--
Q 016265          231 SAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTR---------------------NLEFLKSLGADLAIDYTK--  287 (392)
Q Consensus       231 ~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~---------------------~~~~~~~~G~~~vi~~~~--  287 (392)
                      ..+++|+|+| +|+.|+.++..+.. .|.+|++++..+.                     ..+.++++|.+..++..-  
T Consensus       191 ~~~k~VaIIG-aGpAGl~aA~~La~-~G~~Vtv~e~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~Gv~i~~~~~v~~  268 (652)
T PRK12814        191 KSGKKVAIIG-AGPAGLTAAYYLLR-KGHDVTIFDANEQAGGMMRYGIPRFRLPESVIDADIAPLRAMGAEFRFNTVFGR  268 (652)
T ss_pred             CCCCEEEEEC-CCHHHHHHHHHHHH-CCCcEEEEecCCCCCceeeecCCCCCCCHHHHHHHHHHHHHcCCEEEeCCcccC
Confidence            4578999998 99999999998887 5999988876532                     134556788765554321  


Q ss_pred             -CccccCCCCccEEEecCc
Q 016265          288 -DNFEDLPEKFDVVYDAIG  305 (392)
Q Consensus       288 -~~~~~~~~~~D~vid~~G  305 (392)
                       ....+....+|.||-++|
T Consensus       269 dv~~~~~~~~~DaVilAtG  287 (652)
T PRK12814        269 DITLEELQKEFDAVLLAVG  287 (652)
T ss_pred             ccCHHHHHhhcCEEEEEcC
Confidence             112222335899999888

>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

Probab=91.91  E-value=0.88  Score=41.04  Aligned_cols=37  Identities=30%  Similarity=0.380  Sum_probs=30.4

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcc
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTR  269 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~  269 (392)
                      .+.+++|+|++|++|...+..+.. .|++++++.++..
T Consensus         4 ~~~~vlItG~sg~iG~~l~~~l~~-~G~~v~~~~~~~~   40 (248)
T PRK05557          4 EGKVALVTGASRGIGRAIAERLAA-QGANVVINYASSE   40 (248)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHH-CCCEEEEEeCCch
Confidence            357899999999999999988877 5999877776544

>PLN02662 cinnamyl-alcohol dehydrogenase family protein

Probab=91.90  E-value=0.52  Score=44.73  Aligned_cols=73  Identities=21%  Similarity=0.296  Sum_probs=45.7

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHH---Hhc-CC--c-EEE--eCCC-CccccCCCCccEEE
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFL---KSL-GA--D-LAI--DYTK-DNFEDLPEKFDVVY  301 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~---~~~-G~--~-~vi--~~~~-~~~~~~~~~~D~vi  301 (392)
                      .|.+|||+||+|.+|...+..+.. .|.+|++++++..+....   ..+ +.  . ..+  |..+ ..+.+..+++|+||
T Consensus         3 ~~~~ilVtGatGfIG~~l~~~L~~-~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vi   81 (322)
T PLN02662          3 EGKVVCVTGASGYIASWLVKLLLQ-RGYTVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEGSFDSVVDGCEGVF   81 (322)
T ss_pred             CCCEEEEECChHHHHHHHHHHHHH-CCCEEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcchHHHHHcCCCEEE
Confidence            357899999999999998887776 499998888765543222   111 11  1 122  2211 22333345789999


Q ss_pred             ecCc
Q 016265          302 DAIG  305 (392)
Q Consensus       302 d~~G  305 (392)
                      .+.+
T Consensus        82 h~A~   85 (322)
T PLN02662         82 HTAS   85 (322)
T ss_pred             EeCC
Confidence            8865

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=91.88  E-value=0.68  Score=46.50  Aligned_cols=69  Identities=28%  Similarity=0.413  Sum_probs=46.1

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCc-ccH----HHHHhcCCcEEEeCCCCccccCCCCccEEEecCc
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSST-RNL----EFLKSLGADLAIDYTKDNFEDLPEKFDVVYDAIG  305 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~-~~~----~~~~~~G~~~vi~~~~~~~~~~~~~~D~vid~~G  305 (392)
                      .+.+|+|+| +|.+|+.++..+.. .|++|++.+... +..    +.+.+.|..... .+..+  +..+++|+||.++|
T Consensus         4 ~~k~v~iiG-~g~~G~~~A~~l~~-~G~~V~~~d~~~~~~~~~~~~~l~~~~~~~~~-~~~~~--~~~~~~d~vv~~~g   77 (450)
T PRK14106          4 KGKKVLVVG-AGVSGLALAKFLKK-LGAKVILTDEKEEDQLKEALEELGELGIELVL-GEYPE--EFLEGVDLVVVSPG   77 (450)
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHH-CCCEEEEEeCCchHHHHHHHHHHHhcCCEEEe-CCcch--hHhhcCCEEEECCC
Confidence            468999998 66799998888877 599999888754 222    334455654322 11111  23356899999988

>PRK09134 short chain dehydrogenase; Provisional

Probab=91.87  E-value=0.89  Score=41.68  Aligned_cols=73  Identities=15%  Similarity=0.205  Sum_probs=44.4

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCC-cccHHHH----HhcCCcE-EE--eCCCCc-cc----c---CCC
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSS-TRNLEFL----KSLGADL-AI--DYTKDN-FE----D---LPE  295 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~-~~~~~~~----~~~G~~~-vi--~~~~~~-~~----~---~~~  295 (392)
                      .+.+++|+||+|++|...++.+.. .|++++++++. .++.+.+    +..+... .+  |..+.. ..    +   ...
T Consensus         8 ~~k~vlItGas~giG~~la~~l~~-~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~~   86 (258)
T PRK09134          8 APRAALVTGAARRIGRAIALDLAA-HGFDVAVHYNRSRDEAEALAAEIRALGRRAVALQADLADEAEVRALVARASAALG   86 (258)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHH-CCCEEEEEeCCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            467899999999999987776655 49988877653 3343322    2234321 22  332211 11    1   124


Q ss_pred             CccEEEecCc
Q 016265          296 KFDVVYDAIG  305 (392)
Q Consensus       296 ~~D~vid~~G  305 (392)
                      ++|++|.+.|
T Consensus        87 ~iD~vi~~ag   96 (258)
T PRK09134         87 PITLLVNNAS   96 (258)
T ss_pred             CCCEEEECCc
Confidence            6899999876

>PLN02427 UDP-apiose/xylose synthase

Probab=91.87  E-value=0.59  Score=45.87  Aligned_cols=75  Identities=12%  Similarity=0.065  Sum_probs=46.8

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCC------cEEE--eCCC-CccccCCCCccEEE
Q 016265          231 SAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGA------DLAI--DYTK-DNFEDLPEKFDVVY  301 (392)
Q Consensus       231 ~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~------~~vi--~~~~-~~~~~~~~~~D~vi  301 (392)
                      -+..+|||+||+|-+|...++.+....|.+|++++++.++...+...+.      -..+  |..+ ..+.+..+++|+||
T Consensus        12 ~~~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r~~~~~~~l~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~d~Vi   91 (386)
T PLN02427         12 IKPLTICMIGAGGFIGSHLCEKLMTETPHKVLALDVYNDKIKHLLEPDTVPWSGRIQFHRINIKHDSRLEGLIKMADLTI   91 (386)
T ss_pred             ccCcEEEEECCcchHHHHHHHHHHhcCCCEEEEEecCchhhhhhhccccccCCCCeEEEEcCCCChHHHHHHhhcCCEEE
Confidence            3446799999999999988877665325788888876665554433321      1112  2221 22333345799999


Q ss_pred             ecCc
Q 016265          302 DAIG  305 (392)
Q Consensus       302 d~~G  305 (392)
                      .+.+
T Consensus        92 HlAa   95 (386)
T PLN02427         92 NLAA   95 (386)
T ss_pred             Eccc
Confidence            9875

>PRK09135 pteridine reductase; Provisional

Probab=91.87  E-value=0.91  Score=41.05  Aligned_cols=35  Identities=14%  Similarity=0.214  Sum_probs=29.4

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCC
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSS  267 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~  267 (392)
                      .+.+|||+||+|++|...+..... .|+++++++++
T Consensus         5 ~~~~vlItGa~g~iG~~l~~~l~~-~g~~v~~~~r~   39 (249)
T PRK09135          5 SAKVALITGGARRIGAAIARTLHA-AGYRVAIHYHR   39 (249)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHH-CCCEEEEEcCC
Confidence            457899999999999987777666 49999988875

>PRK08955 glyceraldehyde-3-phosphate dehydrogenase; Validated

Probab=91.85  E-value=2  Score=41.41  Aligned_cols=92  Identities=21%  Similarity=0.207  Sum_probs=55.9

Q ss_pred             eEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeC---CcccHHHHHhc----C---Cc-------EEEeCCCC------ccc
Q 016265          235 SILVLNGSGGVGSLVIQLAKQVFGASRVAATS---STRNLEFLKSL----G---AD-------LAIDYTKD------NFE  291 (392)
Q Consensus       235 ~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~---~~~~~~~~~~~----G---~~-------~vi~~~~~------~~~  291 (392)
                      +|.|.| .|-+|++.++.+......+++.+..   +.+.+.++-++    |   .+       ..++.+.-      +..
T Consensus         4 kigInG-~GRiGr~v~r~~~~~~~~~ivaind~~~~~~~~a~ll~yDs~~g~~~~~v~~~g~~l~~~g~~i~v~~~~~~~   82 (334)
T PRK08955          4 KVGING-FGRIGRLALRAAWDWPELEFVQINDPAGDAATLAHLLEFDSVHGRWHHEVTAEGDAIVINGKRIRTTQNKAIA   82 (334)
T ss_pred             EEEEEC-cCHHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHHhhhhccCCCCCCCEEEcCCEEEECCEEEEEEecCChh
Confidence            689998 5999999999877533455555543   23344444332    2   11       11111110      111


Q ss_pred             cC-CCCccEEEecCcc---HHHHHHhcccCCeEEEEcCCC
Q 016265          292 DL-PEKFDVVYDAIGQ---CDRAVKAIKEGGTVVALTGAV  327 (392)
Q Consensus       292 ~~-~~~~D~vid~~G~---~~~~~~~l~~~G~iv~~g~~~  327 (392)
                      +. =+++|+||+|+|.   .+.+...+..|.+.|.++.+.
T Consensus        83 ~~~w~gvDiVle~tG~~~s~~~a~~hl~aGak~V~iSap~  122 (334)
T PRK08955         83 DTDWSGCDVVIEASGVMKTKALLQAYLDQGVKRVVVTAPV  122 (334)
T ss_pred             hCCccCCCEEEEccchhhcHHHHHHHHHCCCEEEEECCCC
Confidence            11 1289999999994   467778888888888887764

>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase

Probab=91.83  E-value=0.39  Score=46.42  Aligned_cols=38  Identities=24%  Similarity=0.259  Sum_probs=31.8

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCccc
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRN  270 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~  270 (392)
                      .|.+|||+||+|.+|...++.+.. .|.+|++++++...
T Consensus         3 ~~k~ilItGatG~IG~~l~~~L~~-~G~~V~~~~r~~~~   40 (349)
T TIGR02622         3 QGKKVLVTGHTGFKGSWLSLWLLE-LGAEVYGYSLDPPT   40 (349)
T ss_pred             CCCEEEEECCCChhHHHHHHHHHH-CCCEEEEEeCCCcc
Confidence            468999999999999999888877 49999988875543

Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.

>PRK08300 acetaldehyde dehydrogenase; Validated

Probab=91.82  E-value=0.69  Score=43.75  Aligned_cols=88  Identities=17%  Similarity=0.244  Sum_probs=52.4

Q ss_pred             CeEEEEcCCCcHHHHHH-HHHHHhcCCeEEEEeC-Ccc--cHHHHHhcCCcEEEeCCCCcccc-CCCCccEEEecCcc--
Q 016265          234 KSILVLNGSGGVGSLVI-QLAKQVFGASRVAATS-STR--NLEFLKSLGADLAIDYTKDNFED-LPEKFDVVYDAIGQ--  306 (392)
Q Consensus       234 ~~VlI~Ga~G~vG~~ai-qlak~~~G~~vv~~~~-~~~--~~~~~~~~G~~~vi~~~~~~~~~-~~~~~D~vid~~G~--  306 (392)
                      -+|.|+| +|.+|...+ .+.+ ..+.+++.+.. +++  .++.++++|....++.-+..+.. .-.++|+||++++.  
T Consensus         5 lrVAIIG-tG~IGt~hm~~l~~-~~~velvAVvdid~es~gla~A~~~Gi~~~~~~ie~LL~~~~~~dIDiVf~AT~a~~   82 (302)
T PRK08300          5 LKVAIIG-SGNIGTDLMIKILR-SEHLEPGAMVGIDPESDGLARARRLGVATSAEGIDGLLAMPEFDDIDIVFDATSAGA   82 (302)
T ss_pred             CeEEEEc-CcHHHHHHHHHHhc-CCCcEEEEEEeCChhhHHHHHHHHcCCCcccCCHHHHHhCcCCCCCCEEEECCCHHH
Confidence            4689998 999998744 4444 34677776654 333  34667888865433211111111 01469999999983  


Q ss_pred             -HHHHHHhcccCCeEEEE
Q 016265          307 -CDRAVKAIKEGGTVVAL  323 (392)
Q Consensus       307 -~~~~~~~l~~~G~iv~~  323 (392)
                       .+.+.+++..|-.+++.
T Consensus        83 H~e~a~~a~eaGk~VID~  100 (302)
T PRK08300         83 HVRHAAKLREAGIRAIDL  100 (302)
T ss_pred             HHHHHHHHHHcCCeEEEC
Confidence             45555565555555554

>PRK14982 acyl-ACP reductase; Provisional

Probab=91.81  E-value=0.38  Score=46.33  Aligned_cols=91  Identities=15%  Similarity=0.188  Sum_probs=57.0

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHHHHhcCC-eEEEEeCCcccHHHHH-hcCCcEEEeCCCCccccCCCCccEEEecCccHH
Q 016265          231 SAGKSILVLNGSGGVGSLVIQLAKQVFGA-SRVAATSSTRNLEFLK-SLGADLAIDYTKDNFEDLPEKFDVVYDAIGQCD  308 (392)
Q Consensus       231 ~~g~~VlI~Ga~G~vG~~aiqlak~~~G~-~vv~~~~~~~~~~~~~-~~G~~~vi~~~~~~~~~~~~~~D~vid~~G~~~  308 (392)
                      -.+.+|+|+||+|.+|..++..+....|. +++++.++.+++..+. +++...+.     ++.+...++|+|+.+++...
T Consensus       153 l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~La~el~~~~i~-----~l~~~l~~aDiVv~~ts~~~  227 (340)
T PRK14982        153 LSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQELQAELGGGKIL-----SLEEALPEADIVVWVASMPK  227 (340)
T ss_pred             cCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHHHHhccccHH-----hHHHHHccCCEEEECCcCCc
Confidence            36789999998899999887776432354 6667777777766653 44321111     23334457899999887421


Q ss_pred             H---HHHhcccCCeEEEEcCC
Q 016265          309 R---AVKAIKEGGTVVALTGA  326 (392)
Q Consensus       309 ~---~~~~l~~~G~iv~~g~~  326 (392)
                      .   -...++++-.+++++.+
T Consensus       228 ~~~I~~~~l~~~~~viDiAvP  248 (340)
T PRK14982        228 GVEIDPETLKKPCLMIDGGYP  248 (340)
T ss_pred             CCcCCHHHhCCCeEEEEecCC
Confidence            1   11345666666777654

>PLN02366 spermidine synthase

Probab=91.80  E-value=0.84  Score=43.49  Aligned_cols=91  Identities=15%  Similarity=0.222  Sum_probs=54.8

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHHHHhcCC-eEEEEeCCcccHHHHHhcCC-------c---EEEeCCCCcc-ccC-CCCc
Q 016265          231 SAGKSILVLNGSGGVGSLVIQLAKQVFGA-SRVAATSSTRNLEFLKSLGA-------D---LAIDYTKDNF-EDL-PEKF  297 (392)
Q Consensus       231 ~~g~~VlI~Ga~G~vG~~aiqlak~~~G~-~vv~~~~~~~~~~~~~~~G~-------~---~vi~~~~~~~-~~~-~~~~  297 (392)
                      ...++|||+| +|. |.++..++++ .+. ++.+++.+++-.+.++++-.       +   .++..+...+ .+. .+.+
T Consensus        90 ~~pkrVLiIG-gG~-G~~~rellk~-~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~y  166 (308)
T PLN02366         90 PNPKKVLVVG-GGD-GGVLREIARH-SSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTY  166 (308)
T ss_pred             CCCCeEEEEc-CCc-cHHHHHHHhC-CCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCC
Confidence            4568999998 444 6677888886 454 56677777766666665311       1   0111111111 222 3469


Q ss_pred             cEEEec-Cc------------cHHHHHHhcccCCeEEEEc
Q 016265          298 DVVYDA-IG------------QCDRAVKAIKEGGTVVALT  324 (392)
Q Consensus       298 D~vid~-~G------------~~~~~~~~l~~~G~iv~~g  324 (392)
                      |+||-- ..            -++.+.++|+++|.++.-+
T Consensus       167 DvIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~  206 (308)
T PLN02366        167 DAIIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQA  206 (308)
T ss_pred             CEEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECc
Confidence            998842 21            1467888999999997654

>PRK12744 short chain dehydrogenase; Provisional

Probab=91.79  E-value=0.96  Score=41.44  Aligned_cols=34  Identities=29%  Similarity=0.435  Sum_probs=27.9

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeC
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATS  266 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~  266 (392)
                      .+.+++|+||+|++|...+..... .|++++++..
T Consensus         7 ~~k~vlItGa~~gIG~~~a~~l~~-~G~~vv~i~~   40 (257)
T PRK12744          7 KGKVVLIAGGAKNLGGLIARDLAA-QGAKAVAIHY   40 (257)
T ss_pred             CCcEEEEECCCchHHHHHHHHHHH-CCCcEEEEec
Confidence            467899999999999998887766 5998776654

>PRK13656 trans-2-enoyl-CoA reductase; Provisional

Probab=91.78  E-value=0.81  Score=44.76  Aligned_cols=34  Identities=24%  Similarity=0.302  Sum_probs=26.3

Q ss_pred             CCCCeEEEEcCCCcHHHH--HHHHHHHhcCCeEEEEeC
Q 016265          231 SAGKSILVLNGSGGVGSL--VIQLAKQVFGASRVAATS  266 (392)
Q Consensus       231 ~~g~~VlI~Ga~G~vG~~--aiqlak~~~G~~vv~~~~  266 (392)
                      ..|+++||+|+++++|++  .++.+ . .|++++++..
T Consensus        39 ~ggK~aLVTGaSsGIGlA~~IA~al-~-~GA~Vi~v~~   74 (398)
T PRK13656         39 NGPKKVLVIGASSGYGLASRIAAAF-G-AGADTLGVFF   74 (398)
T ss_pred             CCCCEEEEECCCchHhHHHHHHHHH-H-cCCeEEEEec
Confidence            446899999999999999  34444 4 4998888863

>KOG1252 consensus Cystathionine beta-synthase and related enzymes [Amino acid transport and metabolism]

Probab=91.76  E-value=0.75  Score=43.65  Aligned_cols=58  Identities=24%  Similarity=0.333  Sum_probs=49.5

Q ss_pred             HhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeC---CcccHHHHHhcCCcEEEe
Q 016265          226 ERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATS---STRNLEFLKSLGADLAID  284 (392)
Q Consensus       226 ~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~---~~~~~~~~~~~G~~~vi~  284 (392)
                      ....+.||.++||-.-+|-.|...+.++.. .|.+++++..   +.+|+..++++|+..+..
T Consensus        96 ~~G~i~pg~stliEpTSGNtGigLA~~~a~-~Gyk~i~tmP~~ms~Ek~~~l~a~Gaeii~t  156 (362)
T KOG1252|consen   96 KKGLITPGKSTLIEPTSGNTGIGLAYMAAL-RGYKCIITMPEKMSKEKRILLRALGAEIILT  156 (362)
T ss_pred             HcCCccCCceEEEecCCCchHHHHHHHHHH-cCceEEEEechhhhHHHHHHHHHcCCEEEec
Confidence            456799999999999899999999999987 5999999875   778889999999876653

>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]

Probab=91.73  E-value=2.2  Score=41.56  Aligned_cols=98  Identities=31%  Similarity=0.372  Sum_probs=61.8

Q ss_pred             HhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhc--CCeEEEEeCCcccHHHH----HhcCCcE--EEeCCCCccccC---C
Q 016265          226 ERTGFSAGKSILVLNGSGGVGSLVIQLAKQVF--GASRVAATSSTRNLEFL----KSLGADL--AIDYTKDNFEDL---P  294 (392)
Q Consensus       226 ~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~--G~~vv~~~~~~~~~~~~----~~~G~~~--vi~~~~~~~~~~---~  294 (392)
                      ...+.++|++||=.- +++ |--+.++|..+.  |..|++.+.++.|+..+    +++|...  +++.+...+.+.   .
T Consensus       150 ~~L~p~pge~VlD~c-AAP-GGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~  227 (355)
T COG0144         150 LVLDPKPGERVLDLC-AAP-GGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLPGG  227 (355)
T ss_pred             HHcCCCCcCEEEEEC-CCC-CCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEeccccccccccccc
Confidence            456789999887664 333 334455555542  45568888999988766    5688774  444443333222   1


Q ss_pred             CCccEEE-e--cCcc----------------------------HHHHHHhcccCCeEEEEcC
Q 016265          295 EKFDVVY-D--AIGQ----------------------------CDRAVKAIKEGGTVVALTG  325 (392)
Q Consensus       295 ~~~D~vi-d--~~G~----------------------------~~~~~~~l~~~G~iv~~g~  325 (392)
                      +.||.|+ |  |+|.                            +..+++.+++||++|....
T Consensus       228 ~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTC  289 (355)
T COG0144         228 EKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTC  289 (355)
T ss_pred             CcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEcc
Confidence            2488776 4  4541                            3578889999999986543

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=91.72  E-value=1.3  Score=41.77  Aligned_cols=86  Identities=22%  Similarity=0.273  Sum_probs=52.6

Q ss_pred             eEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEE-------EeCC-CCccccCCCCccEEEecCc-
Q 016265          235 SILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLA-------IDYT-KDNFEDLPEKFDVVYDAIG-  305 (392)
Q Consensus       235 ~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~v-------i~~~-~~~~~~~~~~~D~vid~~G-  305 (392)
                      +|+|+| +|.+|.+.+..+.. .|.+|.++++ +++.+.+++.|....       +... ..+..+..+.+|++|-|+- 
T Consensus         2 kI~IiG-~G~iG~~~a~~L~~-~g~~V~~~~r-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vilavk~   78 (305)
T PRK12921          2 RIAVVG-AGAVGGTFGGRLLE-AGRDVTFLVR-PKRAKALRERGLVIRSDHGDAVVPGPVITDPEELTGPFDLVILAVKA   78 (305)
T ss_pred             eEEEEC-CCHHHHHHHHHHHH-CCCceEEEec-HHHHHHHHhCCeEEEeCCCeEEecceeecCHHHccCCCCEEEEEecc
Confidence            589998 99999976666655 4888888888 777777777663211       0000 0112222367899999976 


Q ss_pred             -cHHHHHHhc----ccCCeEEEE
Q 016265          306 -QCDRAVKAI----KEGGTVVAL  323 (392)
Q Consensus       306 -~~~~~~~~l----~~~G~iv~~  323 (392)
                       ..+.+++.+    .++..++.+
T Consensus        79 ~~~~~~~~~l~~~~~~~~~ii~~  101 (305)
T PRK12921         79 YQLDAAIPDLKPLVGEDTVIIPL  101 (305)
T ss_pred             cCHHHHHHHHHhhcCCCCEEEEe
Confidence             344444443    444445544

>PRK06141 ornithine cyclodeaminase; Validated

Probab=91.71  E-value=1.1  Score=42.75  Aligned_cols=93  Identities=17%  Similarity=0.142  Sum_probs=56.3

Q ss_pred             CCCCCeEEEEcCCCcHHHHHHHHHHHhcCC-eEEEEeCCcccHHHH-Hhc---CCcEEEeCCCCccccCCCCccEEEecC
Q 016265          230 FSAGKSILVLNGSGGVGSLVIQLAKQVFGA-SRVAATSSTRNLEFL-KSL---GADLAIDYTKDNFEDLPEKFDVVYDAI  304 (392)
Q Consensus       230 ~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~-~vv~~~~~~~~~~~~-~~~---G~~~vi~~~~~~~~~~~~~~D~vid~~  304 (392)
                      -....+|+|+| +|.+|...+......++. ++.+..+++++.+.+ +++   |..... .  .+..+..+++|+|+.|+
T Consensus       122 ~~~~~~v~iiG-~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~~g~~~~~-~--~~~~~av~~aDIVi~aT  197 (314)
T PRK06141        122 RKDASRLLVVG-TGRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRAQGFDAEV-V--TDLEAAVRQADIISCAT  197 (314)
T ss_pred             CCCCceEEEEC-CcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhcCCceEE-e--CCHHHHHhcCCEEEEee
Confidence            35578899998 999999987644433454 566777887775544 343   322111 1  12233346899999988


Q ss_pred             ccHHHH--HHhcccCCeEEEEcCC
Q 016265          305 GQCDRA--VKAIKEGGTVVALTGA  326 (392)
Q Consensus       305 G~~~~~--~~~l~~~G~iv~~g~~  326 (392)
                      ++-+-.  -+.+++|-.+..+|..
T Consensus       198 ~s~~pvl~~~~l~~g~~i~~ig~~  221 (314)
T PRK06141        198 LSTEPLVRGEWLKPGTHLDLVGNF  221 (314)
T ss_pred             CCCCCEecHHHcCCCCEEEeeCCC
Confidence            742111  2567887755555543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	392
3gaz_A	343	Crystal Structure Of An Alcohol Dehydrogenase Super		9e-20
2vn8_A	375	Crystal Structure Of Human Reticulon 4 Interacting		5e-19
3tqh_A	321	Structure Of The Quinone Oxidoreductase From Coxiel		1e-17
2eih_A	343	Crystal Structure Of Nad-Dependent Alcohol Dehydrog		1e-16
2j8z_A	354	Crystal Structure Of Human P53 Inducible Oxidoreduc		1e-14
2oby_A	338	Crystal Structure Of Human P53 Inducible Oxidoreduc		1e-14
4dup_A	353	Crystal Structure Of A Quinone Oxidoreductase From		3e-12
3fbg_A	346	Crystal Structure Of A Putative Arginate Lyase From		2e-11
1yb5_A	351	Crystal Structure Of Human Zeta-crystallin With Bou		6e-11
3b6z_A	371	Lovastatin Polyketide Enoyl Reductase (Lovc) Comple		6e-10
3gqv_A	371	Lovastatin Polyketide Enoyl Reductase (Lovc) Mutant		2e-09
1iyz_A	302	Crystal Structures Of The Quinone Oxidoreductase Fr		2e-09
2cf2_D	295	Architecture Of Mammalian Fatty Acid Synthase Lengt		8e-09
4a0s_A	447	Structure Of The 2-Octenoyl-Coa Carboxylase Reducta		1e-08
4dvj_A	363	Crystal Structure Of A Putative Zinc-Dependent Alco		1e-08
2wek_A	341	Crystal Structure Of The Human Mgc45594 Gene Produc		3e-08
2x7h_A	370	Crystal Structure Of The Human Mgc45594 Gene Produc		3e-08
2c0c_A	362	Structure Of The Mgc45594 Gene Product Length = 362		3e-08
3uog_A	363	Crystal Structure Of Putative Alcohol Dehydrogenase		6e-06
1r37_A	347	Alcohol Dehydrogenase From Sulfolobus Solfataricus		6e-06
1nto_A	347	N249y Mutant Of Alcohol Dehydrogenase From The Arch		8e-06
3i4c_A	347	Crystal Structure Of Sulfolobus Solfataricus Adh(Ss		1e-05
1llu_A	342	The Ternary Complex Of Pseudomonas Aeruginosa Alcoh		4e-05
1jvb_A	347	Alcohol Dehydrogenase From The Archaeon Sulfolobus		5e-05
2eer_A	347	Structural Study Of Project Id St2577 From Sulfolob		6e-05
1iz0_A	302	Crystal Structures Of The Quinone Oxidoreductase Fr		8e-05
1rjw_A	339	Crystal Structure Of Nad(+)-Dependent Alcohol Dehyd		2e-04
3hzz_A	467	2.4 Angstrom Crystal Structure Of Streptomyces Coll		2e-04
3pii_A	339	Crystal Structure Of Mutant Of Ht- Alcohol Dehydrog		2e-04
1ps0_A	360	Crystal Structure Of The Nadp(H)-Dependent Cinnamyl		3e-04
4eye_A	342	Crystal Structure Of A Probable Oxidoreductase From		9e-04

>pdb|3GAZ|A Chain A, Crystal Structure Of An Alcohol Dehydrogenase Superfamily Protein From Novosphingobium Aromaticivorans Length = 343

Iteration: 1
 Score = 94.4 bits (233), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 91/319 (28%), Positives = 143/319 (44%), Gaps = 40/319 (12%)
Query: 102 EKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTXXXXXXXXXXXXXXXXX 161
            K+  PQ    QVL+++ A+  NP+D K R G+      PLP                  
Sbjct: 23  RKLARPQPAPGQVLVQIEASGTNPLDAKIRAGEAPHAQQPLPAILGXDLAGTVVAVGPEV 82
Query: 162 KEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETA 221
             F+ GD V+G        G  Q G+ A++ AV+ RLLA KP  L   QA+ LPL   TA
Sbjct: 83  DSFRVGDAVFGLTGGV---GGLQ-GTHAQFAAVDARLLASKPAALTXRQASVLPLVFITA 138
Query: 222 YEGL-ERTGFSAGKXXXXXXXXXXXXXXXXQLAKQVFGASRVAATSSTRNLEFLKSLGAD 280
           +EGL +R     G+                Q+A  +   +RV AT+   +LE+++ LGA 
Sbjct: 139 WEGLVDRAQVQDGQTVLIQGGGGGVGHVAIQIA--LARGARVFATARGSDLEYVRDLGAT 196
Query: 281 LAIDYTKDNFEDLPEK-----FDVVYDAIGQ--CDRAVKAIKEGGTVVALTGAVT----P 329
             ID +++  +   E      FD+VYD +G    D +  A+K  G VV+  G  T    P
Sbjct: 197 -PIDASREPEDYAAEHTAGQGFDLVYDTLGGPVLDASFSAVKRFGHVVSCLGWGTHKLAP 255
Query: 330 PGFRFVVTSN----------------GEVLKKLNPYLESGKVKPIIDPKGPFPFSQVVEA 373
             F+    S                 GE L++ +  +++GK+ P +DP+  F  +++  A
Sbjct: 256 LSFKQATYSGVFTLHTLLANEGLAHFGEXLREADALVQTGKLAPRLDPR-TFSIAEIGSA 314
Query: 374 FSYI----ETNKATGKVVI 388
           +  +    +  +  GK+ I
Sbjct: 315 YDAVLGRNDVPRQRGKIAI 333

>pdb|2VN8|A Chain A, Crystal Structure Of Human Reticulon 4 Interacting Protein 1 In Complex With Nadph Length = 375

Iteration: 1
 Score = 92.0 bits (227), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 93/360 (25%), Positives = 147/360 (40%), Gaps = 62/360 (17%)
Query: 86  AWLYGEYGGVDVLKFDEKVTVPQVKE-DQVLIKVVAAALNPVDGKRRQG----------- 133
           AW+  +YG  +VL+F + + +P +   ++V++KV AA++NP+D   R G           
Sbjct: 24  AWVIDKYGKNEVLRFTQNMMMPIIHYPNEVIVKVHAASVNPIDVNMRSGYGATALNMKRD 83
Query: 134 --KFKATDSPLPTXXXXXXXXXXXXXXXXXKEFKEGDEVYGDINEKALEGPKQFGSLAEY 191
               K      P                  K FK GDEV+  +       P + G+L+E+
Sbjct: 84  PLHVKIKGEEFPLTLGRDVSGVVMECGLDVKYFKPGDEVWAAVP------PWKQGTLSEF 137
Query: 192 TAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLERT-GFSAGKXXXXXXXXXXXXXXXX 250
             V    ++ KPK+L   QAA LP    TA+  + +  G +                   
Sbjct: 138 VVVSGNEVSHKPKSLTHTQAASLPYVALTAWSAINKVGGLNDKNCTGKRVLILGASGGVG 197
Query: 251 QLAKQVFGA--SRVAATSSTRNLEFLKSLGADLAIDYTKDNFEDLPEK---FDVVYDAIG 305
             A QV  A  + V A  S    E ++ LGAD  IDY   + E+  +    FD + D +G
Sbjct: 198 TFAIQVMKAWDAHVTAVCSQDASELVRKLGADDVIDYKSGSVEEQLKSLKPFDFILDNVG 257
Query: 306 ----------------------------QCDR---AVKAIKEGGTV--VALTGAVTPPGF 332
                                         DR   A   ++ G TV   AL        +
Sbjct: 258 GSTETWAPDFLKKWSGATYVTLVTPFLLNMDRLGIADGMLQTGVTVGSKALKHFWKGVHY 317
Query: 333 RFV-VTSNGEVLKKLNPYLESGKVKPIIDPKGPFPFSQVVEAFSYIETNKATGKVVIHPI 391
           R+    ++G  L  +   +++GK++P+I+    FPFS+V EAF  +E   A GK VI+ +
Sbjct: 318 RWAFFMASGPCLDDIAELVDAGKIRPVIEQT--FPFSKVPEAFLKVERGHARGKTVINVV 375

>pdb|3TQH|A Chain A, Structure Of The Quinone Oxidoreductase From Coxiella Burnetii Length = 321

Iteration: 1
 Score = 87.4 bits (215), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 93/323 (28%), Positives = 137/323 (42%), Gaps = 29/323 (8%)
Query: 83  EMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGK---FKATD 139
           E KA  + ++G   VLK  +  T P+ +++Q LIKV AA+LNP+D K R G     K   
Sbjct: 6   EXKAIQFDQFGPPKVLKLVDTPT-PEYRKNQXLIKVHAASLNPIDYKTRNGSGFVAKKLK 64
Query: 140 SPLPTXXXXXXXXXXXXXXXXXKEFKEGDEVYGDINEKALEG-PKQFGSLAEYTAVEERL 198
           + LP+                      GD+V G      + G P      AEY       
Sbjct: 65  NNLPSGLGYDFSGEVIELGSDVNNVNIGDKVXG------IAGFPDHPCCYAEYVCASPDT 118
Query: 199 LAPKPKNLDFVQAAGLPLAIETAYEGLERTGFSAGKXXXXXXXXXXXXXXXXQLAKQVFG 258
           +  K + L F+QAA LP A  TA + L +     G                 QLAKQ   
Sbjct: 119 IIQKLEKLSFLQAASLPTAGLTALQALNQAEVKQGDVVLIHAGAGGVGHLAIQLAKQ--K 176
Query: 259 ASRVAATSSTRNLEFLKSLGADLAIDYTKDNF-EDLPEKFDVVYDAIGQ--CDRAVKAIK 315
            + V  T+S RN  FLK+LGA+  I+Y +++F   +    D V D +G     +++  +K
Sbjct: 177 GTTVITTASKRNHAFLKALGAEQCINYHEEDFLLAISTPVDAVIDLVGGDVGIQSIDCLK 236
Query: 316 EGGTVVAL----TGAVTP-------PGFRFVVTSNGEVLKKLNPYLESGKVKPIIDPKGP 364
           E G +V++     G V           F  +   N E L  L   +   K++  I+    
Sbjct: 237 ETGCIVSVPTITAGRVIEVAKQKHRRAFGLLKQFNIEELHYLGKLVSEDKLR--IEISRI 294
Query: 365 FPFSQVVEAFSYIETNKATGKVV 387
           F  S+ V A   +ET    GK+V
Sbjct: 295 FQLSEAVTAHELLETGHVRGKLV 317

>pdb|2EIH|A Chain A, Crystal Structure Of Nad-Dependent Alcohol Dehydrogenase Length = 343

Iteration: 1
 Score = 84.0 bits (206), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 97/349 (27%), Positives = 149/349 (42%), Gaps = 51/349 (14%)
Query: 84  MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLP 143
           M+A +    GG +VL+  + + VP+    +V +++ AAALN +D   R+G   +   PLP
Sbjct: 1   MRAVVMRARGGPEVLEVAD-LPVPEPGPKEVRVRLKAAALNHLDVWVRKG-VASPKLPLP 58
Query: 144 TXXXXXXXXXXXXXXXXXKEFKEGDEVYGDIN--------EKALEG-----PK------- 183
                             + F  GDEV   IN        E+ L G     P+       
Sbjct: 59  HVLGADGSGVVDAVGPGVEGFAPGDEVV--INPGLSCGRCERCLAGEDNLCPRYQILGEH 116
Query: 184 QFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEG-LERTGFSAGKXXXXXXXX 242
           + G+ AEY  + E  LAPKPKNL F +AA +PL   TA++  +++ G   G         
Sbjct: 117 RHGTYAEYVVLPEANLAPKPKNLSFEEAAAIPLTFLTAWQMVVDKLGVRPGDDVLVMAAG 176
Query: 243 XXXXXXXXQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFEDLPEKF----- 297
                   Q+AK +FGA  +A   S   L   K+LGAD  ++YT  ++     +      
Sbjct: 177 SGVSVAAIQIAK-LFGARVIATAGSEDKLRRAKALGADETVNYTHPDWPKEVRRLTGGKG 235
Query: 298 -DVVYDAIGQC--DRAVKAIKEGGTVVALTGAVT------PPGFRF-----VVTSNGEVL 343
            D V D  G    +  +KA   GG  +A+ GA +      P    F     ++ S     
Sbjct: 236 ADKVVDHTGALYFEGVIKATANGGR-IAIAGASSGYEGTLPFAHVFYRQLSILGSTMASK 294
Query: 344 KKLNP---YLESGKVKPIIDPKGPFPFSQVVEAFSYIETNKATGKVVIH 389
            +L P   ++E GK+KP++      P     E    +E  +  GKVV+ 
Sbjct: 295 SRLFPILRFVEEGKLKPVVGQV--LPLEAAAEGHRLLEERRVFGKVVLQ 341

>pdb|2J8Z|A Chain A, Crystal Structure Of Human P53 Inducible Oxidoreductase ( Tp53i3,Pig3) Length = 354

Iteration: 1
 Score = 77.4 bits (189), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 82/323 (25%), Positives = 129/323 (39%), Gaps = 44/323 (13%)
Query: 100 FDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTXXXXXXXXXXXXXXX 159
           + ++V  P   E +VL+KV A+ALN  D  +RQG++       P                
Sbjct: 38  YVKEVAKPSPGEGEVLLKVAASALNRADLMQRQGQYDP-----PPGASNILGLEASGHVA 92
Query: 160 XXKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIE 219
                 +G    GD     L G    G  A+Y  V E LL P P+ L   QAA +P A  
Sbjct: 93  ELGPGCQGHWKIGDTAMALLPG----GGQAQYVTVPEGLLMPIPEGLTLTQAAAIPEAWL 148
Query: 220 TAYEGLERTG-FSAGKXXXXXXXXXXXXXXXXQLAKQVFGASRVAATSSTRNLEFLKSLG 278
           TA++ L   G   AG                 QL +   GA  +    S + L+  + LG
Sbjct: 149 TAFQLLHLVGNVQAGDYVLIHAGLSGVGTAAIQLTRMA-GAIPLVTAGSQKKLQMAEKLG 207
Query: 279 ADLAIDYTKDNFEDLPEKF------DVVYDAIG--QCDRAVKAIKEGGTVVAL----TGA 326
           A    +Y K++F +   KF      +++ D IG    ++ V  +   G  V       G 
Sbjct: 208 AAAGFNYKKEDFSEATLKFTKGAGVNLILDCIGGSYWEKNVNCLALDGRWVLYGLMGGGD 267
Query: 327 VTPPGFRFVVTSNGEVLKKL-----NPYLE------SGKVKPIIDPKGP----------F 365
           +  P F  ++   G ++  L     N Y +      + ++ P    +GP          +
Sbjct: 268 INGPLFSKLLFKRGSLITSLLRSRDNKYKQMLVNAFTEQILPHFSTEGPQRLLPVLDRIY 327
Query: 366 PFSQVVEAFSYIETNKATGKVVI 388
           P +++ EA  Y+E NK  GK+V+
Sbjct: 328 PVTEIQEAHKYMEANKNIGKIVL 350

>pdb|2OBY|A Chain A, Crystal Structure Of Human P53 Inducible Oxidoreductase (Tp53i3,Pig3) Length = 338

Iteration: 1
 Score = 77.4 bits (189), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 82/323 (25%), Positives = 129/323 (39%), Gaps = 44/323 (13%)
Query: 100 FDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTXXXXXXXXXXXXXXX 159
           + ++V  P   E +VL+KV A+ALN  D  +RQG++       P                
Sbjct: 22  YVKEVAKPSPGEGEVLLKVAASALNRADLMQRQGQYDP-----PPGASNILGLEASGHVA 76
Query: 160 XXKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIE 219
                 +G    GD     L G    G  A+Y  V E LL P P+ L   QAA +P A  
Sbjct: 77  ELGPGCQGHWKIGDTAMALLPG----GGQAQYVTVPEGLLMPIPEGLTLTQAAAIPEAWL 132
Query: 220 TAYEGLERTG-FSAGKXXXXXXXXXXXXXXXXQLAKQVFGASRVAATSSTRNLEFLKSLG 278
           TA++ L   G   AG                 QL +   GA  +    S + L+  + LG
Sbjct: 133 TAFQLLHLVGNVQAGDYVLIHAGLSGVGTAAIQLTRMA-GAIPLVTAGSQKKLQMAEKLG 191
Query: 279 ADLAIDYTKDNFEDLPEKF------DVVYDAIG--QCDRAVKAIKEGGTVVAL----TGA 326
           A    +Y K++F +   KF      +++ D IG    ++ V  +   G  V       G 
Sbjct: 192 AAAGFNYKKEDFSEATLKFTKGAGVNLILDCIGGSYWEKNVNCLALDGRWVLYGLMGGGD 251
Query: 327 VTPPGFRFVVTSNGEVLKKL-----NPYLE------SGKVKPIIDPKGP----------F 365
           +  P F  ++   G ++  L     N Y +      + ++ P    +GP          +
Sbjct: 252 INGPLFSKLLFKRGSLITSLLRSRDNKYKQMLVNAFTEQILPHFSTEGPQRLLPVLDRIY 311
Query: 366 PFSQVVEAFSYIETNKATGKVVI 388
           P +++ EA  Y+E NK  GK+V+
Sbjct: 312 PVTEIQEAHKYMEANKNIGKIVL 334

>pdb|4DUP|A Chain A, Crystal Structure Of A Quinone Oxidoreductase From Rhizobium Etli Cfn 42 Length = 353

Iteration: 1
 Score = 69.7 bits (169), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 82/342 (23%), Positives = 132/342 (38%), Gaps = 46/342 (13%)
Query: 79  TVPSEMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKAT 138
           ++P E +      +GG DV    ++  +P   E +VL++  A  +N  D  +RQG +   
Sbjct: 24  SLPQEXRFVDLKSFGGPDVXVIGKR-PLPVAGEGEVLVRAEAIGVNRPDIAQRQGSYPPP 82
Query: 139 DSPLPTXXXXXXXXXXXXXXXXXKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERL 198
               P                    +  GD+V G  N          G+ AEY  +    
Sbjct: 83  KDASPILGLELSGEIVGVGPGVSG-YAVGDKVCGLANG---------GAYAEYCLLPAGQ 132
Query: 199 LAPKPKNLDFVQAAGLPLAIETAYEGL-ERTGFSAGKXXXXXXXXXXXXXXXXQLAKQVF 257
           + P PK  D V+AA LP    T +  L +  G + G+                QLA+  F
Sbjct: 133 ILPFPKGYDAVKAAALPETFFTVWANLFQXAGLTEGESVLIHGGTSGIGTTAIQLAR-AF 191
Query: 258 GASRVAATSSTRNLEFLKSLGADLAIDYTKDNF-----EDLPEKFDVVYDAIGQC--DRA 310
           GA   A   ST   E  + LGA   I+Y  ++F      +  +  D++ D IG    +R 
Sbjct: 192 GAEVYATAGSTGKCEACERLGAKRGINYRSEDFAAVIKAETGQGVDIILDXIGAAYFERN 251
Query: 311 VKAIKEGG--TVVALTGAVTPPGF--------RFVVTSN--------------GEVLKKL 346
           + ++ + G  +++A  G               R  VT +               ++L ++
Sbjct: 252 IASLAKDGCLSIIAFLGGAVAEKVNLSPIXVKRLTVTGSTXRPRTAEEKRAIRDDLLSEV 311
Query: 347 NPYLESGKVKPIIDPKGPFPFSQVVEAFSYIETNKATGKVVI 388
            P LE+G V P+I     F F  V +A   +E     GKV +
Sbjct: 312 WPLLEAGTVAPVIHKV--FAFEDVADAHRLLEEGSHVGKVXL 351

>pdb|3FBG|A Chain A, Crystal Structure Of A Putative Arginate Lyase From Staphylococcus Haemolyticus Length = 346

Iteration: 1
 Score = 67.0 bits (162), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 54/187 (28%), Positives = 80/187 (42%), Gaps = 18/187 (9%)
Query: 106 VPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTXXXXXXXXXXXXXXXXXKEFK 165
           +P+ K  ++L+K+ + ++NPVD K+R        S  P                    F 
Sbjct: 27  IPEPKVHEILVKIQSISVNPVDTKQRLMDV----SKAPRVLGFDAIGVVESVGNEVTMFN 82
Query: 166 EGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYE-- 223
           +GD VY          P Q GS AEY  + ERL+A  PKN+   QA  LPL   TAYE  
Sbjct: 83  QGDIVYYS------GSPDQNGSNAEYQLINERLVAKAPKNISAEQAVSLPLTGITAYETL 136
Query: 224 ----GLERT-GFSAGKXXXXXXXXXXXXXXXXQLAKQVFGASRVAATSSTRNLEFLKSLG 278
               G+ R    + GK                Q+AK  +G   +   S    +E+ K +G
Sbjct: 137 FDVFGISRNRNENEGKTLLIINGAGGVGSIATQIAK-AYGLRVITTASRNETIEWTKKMG 195
Query: 279 ADLAIDY 285
           AD+ +++
Sbjct: 196 ADIVLNH 202

>pdb|1YB5|A Chain A, Crystal Structure Of Human Zeta-crystallin With Bound Nadp Length = 351

Iteration: 1
 Score = 65.5 bits (158), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 77/332 (23%), Positives = 133/332 (40%), Gaps = 39/332 (11%)
Query: 84  MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLP 143
           M+A    E+GG +VLK    + VP  K+ QVLIKV A  +NPV+   R G + +    LP
Sbjct: 30  MRAVRVFEFGGPEVLKLRSDIAVPIPKDHQVLIKVHACGVNPVETYIRSGTY-SRKPLLP 88
Query: 144 TXXXXXXXXXXXXXXXXXKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKP 203
                               FK+GD V+              G  AEY    +  +   P
Sbjct: 89  YTPGSDVAGVIEAVGDNASAFKKGDRVF--------TSSTISGGYAEYALAADHTVYKLP 140
Query: 204 KNLDFVQAAGLPLAIETAYEGLERTG-FSAGKXXXXXXXXXXXXXXXXQLAKQVFGASRV 262
           + LDF Q A + +   TAY  L  +    AG+                Q+A+  +G   +
Sbjct: 141 EKLDFKQGAAIGIPYFTAYRALIHSACVKAGESVLVHGASGGVGLAACQIAR-AYGLKIL 199
Query: 263 AATSSTRNLEFLKSLGADLAIDYTKDNFEDLPEKF------DVVYDAIGQCD--RAVKAI 314
               +    + +   GA    ++ + N+ D  +K+      D++ + +   +  + +  +
Sbjct: 200 GTAGTEEGQKIVLQNGAHEVFNHREVNYIDKIKKYVGEKGIDIIIEMLANVNLSKDLSLL 259
Query: 315 KEGGTVVAL----TGAVTPP----------GFRFVVTSNGEVLK---KLNPYLESGKVKP 357
             GG V+ +    T  + P           G     ++  E  +    L   +E G +KP
Sbjct: 260 SHGGRVIVVGSRGTIEINPRDTMAKESSIIGVTLFSSTKEEFQQYAAALQAGMEIGWLKP 319
Query: 358 IIDPKGPFPFSQVVEAF-SYIETNKATGKVVI 388
           +I  +  +P  +V EA  + I  + ATGK+++
Sbjct: 320 VIGSQ--YPLEKVAEAHENIIHGSGATGKMIL 349

>pdb|3B6Z|A Chain A, Lovastatin Polyketide Enoyl Reductase (Lovc) Complexed With 2'- Phosphoadenosyl Isomer Of Crotonoyl-Coa Length = 371

Iteration: 1
 Score = 62.0 bits (149), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 55/196 (28%), Positives = 72/196 (36%), Gaps = 17/196 (8%)
Query: 106 VPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTXXXXXXXXXXXXXXXXXKEFK 165
            P +  DQV ++V A A+NP D K R G+F    + L T                    +
Sbjct: 31  CPMLPRDQVYVRVEAVAINPSDTKMR-GQFATPWAFLGTDYAGTVVAVGSDVT----HIQ 85
Query: 166 EGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGL 225
            GD VYG  NE     P Q G+ ++YT    R+ A  PK L F QAA LP  I TA   +
Sbjct: 86  VGDRVYGAQNEMCPRTPDQ-GAFSQYTVTRGRVWAKIPKGLSFEQAAALPAGISTAGLAM 144
Query: 226 ERTGF-----------SAGKXXXXXXXXXXXXXXXXQLAKQVFGASRVAATSSTRNLEFL 274
           +  G            +  K                 +           AT S  N +  
Sbjct: 145 KLLGLPLPSPSADQPPTHSKPVYVLVYGGSTATATVTMQMLRLSGYIPIATCSPHNFDLA 204
Query: 275 KSLGADLAIDYTKDNF 290
           KS GA+   DY   N 
Sbjct: 205 KSRGAEEVFDYRAPNL 220

>pdb|3GQV|A Chain A, Lovastatin Polyketide Enoyl Reductase (Lovc) Mutant K54s With Bound Nadp Length = 371

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 54/196 (27%), Positives = 71/196 (36%), Gaps = 17/196 (8%)
Query: 106 VPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTXXXXXXXXXXXXXXXXXKEFK 165
            P +  DQV ++V A A+NP D   R G+F    + L T                    +
Sbjct: 31  CPMLPRDQVYVRVEAVAINPSDTSMR-GQFATPWAFLGTDYAGTVVAVGSDVT----HIQ 85
Query: 166 EGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGL 225
            GD VYG  NE     P Q G+ ++YT    R+ A  PK L F QAA LP  I TA   +
Sbjct: 86  VGDRVYGAQNEMCPRTPDQ-GAFSQYTVTRGRVWAKIPKGLSFEQAAALPAGISTAGLAM 144
Query: 226 ERTGF-----------SAGKXXXXXXXXXXXXXXXXQLAKQVFGASRVAATSSTRNLEFL 274
           +  G            +  K                 +           AT S  N +  
Sbjct: 145 KLLGLPLPSPSADQPPTHSKPVYVLVYGGSTATATVTMQMLRLSGYIPIATCSPHNFDLA 204
Query: 275 KSLGADLAIDYTKDNF 290
           KS GA+   DY   N 
Sbjct: 205 KSRGAEEVFDYRAPNL 220

>pdb|1IYZ|A Chain A, Crystal Structures Of The Quinone Oxidoreductase From Thermus Thermophilus Hb8 And Its Complex With Nadph Length = 302

Iteration: 1
 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 84/334 (25%), Positives = 133/334 (39%), Gaps = 61/334 (18%)
Query: 84  MKAWLYGEYGG-VDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPL 142
           MKAW+    GG ++++   E    P+ +E +V+++V A  LN  D   R G +     P 
Sbjct: 1   MKAWVLKRLGGPLELVDLPE----PEAEEGEVVLRVEAVGLNFADHLMRLGAYLTRLHP- 55
Query: 143 PTXXXXXXXXXXXXXXXXXKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPK 202
                                F  G EV G +  +        G LAE  AV +  L P 
Sbjct: 56  --------------------PFIPGMEVVGVVEGRRYAALVPQGGLAERVAVPKGALLPL 95
Query: 203 PKNLDFVQAAGLPLAIETAYEGLERTGFSAGKXXXXXXXXXXXXXXXXQLAKQVFGASRV 262
           P+ L   +AA  P++  TAY  L+R     G+                Q+A+   G   +
Sbjct: 96  PEGLSPEEAAAFPVSFLTAYLALKRAQARPGEKVLVQAAAGALGTAAVQVARA-MGLRVL 154
Query: 263 AATSSTRNLEFLKSLGADLAIDYTKDNFEDLPEK------FDVVYDAIG-QCDRAVKAIK 315
           AA S    L    +LGA+ A  Y      ++PE+       D+V +  G + + ++  + 
Sbjct: 155 AAASRPEKLALPLALGAEEAATYA-----EVPERAKAWGGLDLVLEVRGKEVEESLGLLA 209
Query: 316 EGGTVV---ALTGAVTP-PGFRFVVTSNGEVLKKLNPYLESG----------------KV 355
            GG +V   A  G V P P  R +  +   +   L P L  G                ++
Sbjct: 210 HGGRLVYIGAAEGEVAPIPPLRLMRRNLAVLGFWLTPLLREGALVEEALGFLLPRLGREL 269
Query: 356 KPIIDPKGPFPFSQVVEAFSYIETNKATGKVVIH 389
           +P++ P   FPF++   AF  +     TGKVV+ 
Sbjct: 270 RPVVGPV--FPFAEAEAAFRALLDRGHTGKVVVR 301

>pdb|2CF2|D Chain D, Architecture Of Mammalian Fatty Acid Synthase Length = 295

Iteration: 1
 Score = 58.2 bits (139), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 82/330 (24%), Positives = 132/330 (40%), Gaps = 60/330 (18%)
Query: 84  MKAWLYGEYGG-VDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPL 142
           MKAW+    GG ++++   E    P+ +E +V+++V A  LN  D   R G +     P 
Sbjct: 1   MKAWVLKRLGGPLELVDLPE----PEAEEGEVVLRVEAVGLNFADHLMRLGAYLTRLHP- 55
Query: 143 PTXXXXXXXXXXXXXXXXXKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPK 202
                                F  G EV G +  +        G LAE  AV +  L P 
Sbjct: 56  --------------------PFIPGMEVVGVVEGRRYAALVPQGGLAERVAVPKGALLPL 95
Query: 203 PKNLDFVQAAGLPLAIETAYEGLERTGFSAGKXXXXXXXXXXXXXXXXQLAKQVFGASRV 262
           P+ L   +AA  P++  TAY  L+R     G+                Q+A+   G   +
Sbjct: 96  PEGLSPEEAAAFPVSFLTAYLALKRAQARPGEKVLVQAAAGALGTAAVQVARA-MGLRVL 154
Query: 263 AATSSTRNLEFLKSLGADLAIDYTKDNFEDLPEK------FDVVYDAIG-QCDRAVKAIK 315
           AA S    L    +LGA+ A  Y      ++PE+       D+V +  G + + ++  + 
Sbjct: 155 AAASRPEKLALPLALGAEEAATYA-----EVPERAKAWGGLDLVLEVRGKEVEESLGLLA 209
Query: 316 EGGTVVALTGAVTPPGFRFVVTSNGEVLKKLNPYLESG----------------KVKPII 359
            GG +V +  A  PP  R +  +   +   L P L  G                +++P++
Sbjct: 210 HGGRLVYI--APIPP-LRLMRRNLAVLGFWLTPLLREGALVEEALGFLLPRLGRELRPVV 266
Query: 360 DPKGPFPFSQVVEAFSYIETNKATGKVVIH 389
            P   FPF++   AF  +     TGKVV+ 
Sbjct: 267 GPV--FPFAEAEAAFRALLDRGHTGKVVVR 294

>pdb|4A0S|A Chain A, Structure Of The 2-Octenoyl-Coa Carboxylase Reductase Cinf In Complex With Nadp And 2-Octenoyl-Coa Length = 447

Iteration: 1
 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 68/264 (25%), Positives = 103/264 (39%), Gaps = 45/264 (17%)
Query: 166 EGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGL 225
            GD + G   ++A      FG LAEY  V    L PKP +L + +AA  PL   TAY  L
Sbjct: 152 HGDGMLG-TEQRAWGFETNFGGLAEYGVVRASQLLPKPAHLTWEEAAVSPLCAGTAYRML 210
Query: 226 ---ERTGFSAGKXXXXXXXXXXXXXXXXQLAKQVFGASRVAATSSTRNLEFLKSLGADLA 282
                     G                 Q  K   G   VA  SS +    +++LG DL 
Sbjct: 211 VSDRGAQMKQGDIVLIWGASGGLGSYAIQFVKN-GGGIPVAVVSSAQKEAAVRALGCDLV 269
Query: 283 IDYTK----DNFEDLPEKF-------------------DVVYDAIGQCDRAVKAI--KEG 317
           I+  +    D+  D P +                    D+V++  G+    +  I  + G
Sbjct: 270 INRAELGITDDIADDPRRVVETGRKLAKLVVEKAGREPDIVFEHTGRVTFGLSVIVARRG 329
Query: 318 GTVVAL---TGAVTPPGFRF-------VVTSNG---EVLKKLNPYLESGKVKPIIDPKGP 364
           GTVV     +G +     R+       +V S+G   E  +  N   ESG V P +     
Sbjct: 330 GTVVTCGSSSGYLHTFDNRYLWMKLKKIVGSHGANHEEQQATNRLFESGAVVPAM--SAV 387
Query: 365 FPFSQVVEAFSYIETNKATGKVVI 388
           +P ++  EA   ++T++  GKV +
Sbjct: 388 YPLAEAAEACRVVQTSRQVGKVAV 411

>pdb|4DVJ|A Chain A, Crystal Structure Of A Putative Zinc-Dependent Alcohol Dehydrogenase Protein From Rhizobium Etli Cfn 42 Length = 363

Iteration: 1
 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 57/201 (28%), Positives = 85/201 (42%), Gaps = 20/201 (9%)
Query: 96  DVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGK-RRQGKFKATDSPLPTXXXXXXXXXX 154
           D    D ++  P      +L++V A ++NPVD K RR      TD  +            
Sbjct: 37  DASLLDIELPKPAPAGHDILVEVKAVSVNPVDYKVRRSTPPDGTDWKV---IGYDAAGIV 93
Query: 155 XXXXXXXKEFKEGDEVY--GDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAA 212
                    F+ GDEV+  G I           G+ AE+  V+ER++  KPK LD+ +AA
Sbjct: 94  SAVGPDVTLFRPGDEVFYAGSIIRP--------GTNAEFHLVDERIVGRKPKTLDWAEAA 145
Query: 213 GLPLAIETAYEG-LERTGFS-----AGKXXXXXXXXXXXXXXXXQLAKQVFGASRVAATS 266
            LPL   TA+E   +R   +     A                  Q+A+Q    + +A  S
Sbjct: 146 ALPLTSITAWEAFFDRLDVNKPVPGAAPAILIVGGAGGVGSIAVQIARQRTDLTVIATAS 205
Query: 267 STRNLEFLKSLGADLAIDYTK 287
                E++KSLGA   ID++K
Sbjct: 206 RPETQEWVKSLGAHHVIDHSK 226

>pdb|2WEK|A Chain A, Crystal Structure Of The Human Mgc45594 Gene Product In Complex With Diclofenac Length = 341

Iteration: 1
 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 73/246 (29%), Positives = 101/246 (41%), Gaps = 48/246 (19%)
Query: 186 GSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIE--TAYEGL-ERTGFSAGKXXXXXXXX 242
           GS AEYT V   +  P P     V+   L L +   TAY  L E  G S GK        
Sbjct: 97  GSFAEYTVVPASIATPVPS----VKPEYLTLLVSGTTAYISLKELGGLSEGKKVLVTAAA 152
Query: 243 XXXXXXXXQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNF-----EDLPEKF 297
                   QL+K+      +   SS     FLKSLG D  I+Y  +       ++ PE  
Sbjct: 153 GGTGQFAMQLSKKA-KCHVIGTCSSDEKSAFLKSLGCDRPINYKTEPVGTVLKQEYPEGV 211
Query: 298 DVVYDAIGQC--DRAVKAIKEGGTVVA---LTGAVTPPGFRFVV--TSNGEVLKK----- 345
           DVVY+++G    D AV A+   G ++    ++G  TP G   V   T   ++LKK     
Sbjct: 212 DVVYESVGGAMFDLAVDALATKGRLIVIGFISGYQTPTGLSPVKAGTLPAKLLKKSASVQ 271
Query: 346 ---LNPYLE--------------SGKVKPIID-----PKGPFP-FSQVVEAFSYIETNKA 382
              LN YL               SG +   +D     P+G F     +  A +Y+   K 
Sbjct: 272 GFFLNHYLSKYQAAMSHLLEMCVSGDLVCEVDLGDLSPEGRFTGLESIFRAVNYMYMGKN 331
Query: 383 TGKVVI 388
           TGK+V+
Sbjct: 332 TGKIVV 337

>pdb|2X7H|A Chain A, Crystal Structure Of The Human Mgc45594 Gene Product In Complex With Fenoprofen Length = 370

Iteration: 1
 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 73/246 (29%), Positives = 101/246 (41%), Gaps = 48/246 (19%)
Query: 186 GSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIE--TAYEGL-ERTGFSAGKXXXXXXXX 242
           GS AEYT V   +  P P     V+   L L +   TAY  L E  G S GK        
Sbjct: 126 GSFAEYTVVPASIATPVPS----VKPEYLTLLVSGTTAYISLKELGGLSEGKKVLVTAAA 181
Query: 243 XXXXXXXXQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNF-----EDLPEKF 297
                   QL+K+      +   SS     FLKSLG D  I+Y  +       ++ PE  
Sbjct: 182 GGTGQFAMQLSKKA-KCHVIGTCSSDEKSAFLKSLGCDRPINYKTEPVGTVLKQEYPEGV 240
Query: 298 DVVYDAIGQC--DRAVKAIKEGGTVVA---LTGAVTPPGFRFVV--TSNGEVLKK----- 345
           DVVY+++G    D AV A+   G ++    ++G  TP G   V   T   ++LKK     
Sbjct: 241 DVVYESVGGAMFDLAVDALATKGRLIVIGFISGYQTPTGLSPVKAGTLPAKLLKKSASVQ 300
Query: 346 ---LNPYLE--------------SGKVKPIID-----PKGPFP-FSQVVEAFSYIETNKA 382
              LN YL               SG +   +D     P+G F     +  A +Y+   K 
Sbjct: 301 GFFLNHYLSKYQAAMSHLLEMCVSGDLVCEVDLGDLSPEGRFTGLESIFRAVNYMYMGKN 360
Query: 383 TGKVVI 388
           TGK+V+
Sbjct: 361 TGKIVV 366

>pdb|2C0C|A Chain A, Structure Of The Mgc45594 Gene Product Length = 362

Iteration: 1
 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 73/246 (29%), Positives = 101/246 (41%), Gaps = 48/246 (19%)
Query: 186 GSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIE--TAYEGL-ERTGFSAGKXXXXXXXX 242
           GS AEYT V   +  P P     V+   L L +   TAY  L E  G S GK        
Sbjct: 118 GSFAEYTVVPASIATPVPS----VKPEYLTLLVSGTTAYISLKELGGLSEGKKVLVTAAA 173
Query: 243 XXXXXXXXQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNF-----EDLPEKF 297
                   QL+K+      +   SS     FLKSLG D  I+Y  +       ++ PE  
Sbjct: 174 GGTGQFAMQLSKKA-KCHVIGTCSSDEKSAFLKSLGCDRPINYKTEPVGTVLKQEYPEGV 232
Query: 298 DVVYDAIGQC--DRAVKAIKEGGTVVA---LTGAVTPPGFRFVV--TSNGEVLKK----- 345
           DVVY+++G    D AV A+   G ++    ++G  TP G   V   T   ++LKK     
Sbjct: 233 DVVYESVGGAMFDLAVDALATKGRLIVIGFISGYQTPTGLSPVKAGTLPAKLLKKSASVQ 292
Query: 346 ---LNPYLE--------------SGKVKPIID-----PKGPFP-FSQVVEAFSYIETNKA 382
              LN YL               SG +   +D     P+G F     +  A +Y+   K 
Sbjct: 293 GFFLNHYLSKYQAAMSHLLEMCVSGDLVCEVDLGDLSPEGRFTGLESIFRAVNYMYMGKN 352
Query: 383 TGKVVI 388
           TGK+V+
Sbjct: 353 TGKIVV 358

>pdb|3UOG|A Chain A, Crystal Structure Of Putative Alcohol Dehydrogenase From Sinorhizobium Meliloti 1021 Length = 363

Iteration: 1
 Score = 48.5 bits (114), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 77/330 (23%), Positives = 127/330 (38%), Gaps = 48/330 (14%)
Query: 98  LKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTXXXXXXXXXXXXX 157
           LK  E+  VP+  E  ++++ +A +LN  D K         D   P              
Sbjct: 41  LKLAER-PVPEAGEHDIIVRTLAVSLNYRD-KLVLETGXGLDLAFPFVPASDXSGVVEAV 98
Query: 158 XXXXKEFKEGDEVYGDINEKALEGPK---------------QFGSLAEYTAVEERLLAPK 202
                 F+ GD V        L+G +                 G L+EY  + E      
Sbjct: 99  GKSVTRFRPGDRVISTFAPGWLDGLRPGTGRTPAYETLGGAHPGVLSEYVVLPEGWFVAA 158
Query: 203 PKNLDFVQAAGLPLAIETAYEGLERTGFSAGKXXXXXXXXXXXXXXXXQLAKQVFGASRV 262
           PK+LD  +A+ LP A  TA+  L   G                     Q+AK   GA  +
Sbjct: 159 PKSLDAAEASTLPCAGLTAWFALVEKGHLRAGDRVVVQGTGGVALFGLQIAKAT-GAEVI 217
Query: 263 AATSSTRNLEFLKSLGADLAIDYTKDNFEDLPEKF---------DVVYDAIGQC--DRAV 311
             +SS   L+   +LGAD  I+  +   ED  E+          D + +  G     +++
Sbjct: 218 VTSSSREKLDRAFALGADHGINRLE---EDWVERVYALTGDRGADHILEIAGGAGLGQSL 274
Query: 312 KAIKEGGTVVAL--------TGAVTP-----PGFRFVVTSNGEVLKKLNPYLESGKVKPI 358
           KA+   G +  +        +G V P     P  + +   +   L+ L   ++   +KP+
Sbjct: 275 KAVAPDGRISVIGVLEGFEVSGPVGPLLLKSPVVQGISVGHRRALEDLVGAVDRLGLKPV 334
Query: 359 IDPKGPFPFSQVVEAFSYIETNKATGKVVI 388
           ID +  + F++V EA ++++     GKVVI
Sbjct: 335 IDXR--YKFTEVPEALAHLDRGP-FGKVVI 361

>pdb|1R37|A Chain A, Alcohol Dehydrogenase From Sulfolobus Solfataricus Complexed With Nad(H) And 2-Ethoxyethanol Length = 347

Iteration: 1
 Score = 48.5 bits (114), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 82/335 (24%), Positives = 128/335 (38%), Gaps = 49/335 (14%)
Query: 102 EKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKF------KATDSPLPTXXXXXXXXXXX 155
           +++ VP+ K  QVLIKV AA +   D   RQG+F      +     LP            
Sbjct: 16  QEIGVPKPKGPQVLIKVEAAGVCHSDVHMRQGRFGNLRIVEDLGVKLPVTLGHEIAGKIE 75
Query: 156 XXXXXXKEFKEGDEV------------YGDINEKAL-EGPKQFG-----SLAEYTAVEER 197
                   + +GD V            Y  I E+ L + P+  G     + AEY  V   
Sbjct: 76  EVGDEVVGYSKGDLVAVNPWQGEGNCYYCRIGEEHLCDSPRWLGINFDGAYAEYVIVPHY 135
Query: 198 LLAPKPKNLDFVQAAGLPLAIETAYEGLERTGFSAGKXXXXXXXXXXXXXXXXQLAKQVF 257
               K + L+ V+AA L  +  T Y  + +      K                Q+AK V 
Sbjct: 136 KYMYKLRRLNAVEAAPLTCSGITTYRAVRKASLDPTKTLLVVGAGGGLGTMAVQIAKAVS 195
Query: 258 GASRVAATSSTRNLEFLKSLGADLAIDYT-KDNFEDL-----PEKFDVVYDAIGQCDRAV 311
           GA+ +        +E  K  GAD  I+ + +D   ++      +  D V D +   ++ +
Sbjct: 196 GATIIGVDVREEAVEAAKRAGADYVINASMQDPLAEIRRITESKGVDAVID-LNNSEKTL 254
Query: 312 ----KAIKEGG--TVVALTGA--------VTPPGFRFV--VTSNGEVLKKLNPYLESGKV 355
               KA+ + G   +V L GA        +T    +FV  +  N      +    E+GKV
Sbjct: 255 SVYPKALAKQGKYVMVGLFGADLHYHAPLITLSEIQFVGSLVGNQSDFLGIMRLAEAGKV 314
Query: 356 KPIIDPKGPFPFSQVVEAFSYIETNKATGKVVIHP 390
           KP+I         +  EA   +E  KA G+ V+ P
Sbjct: 315 KPMITKT--MKLEEANEAIDNLENFKAIGRQVLIP 347

>pdb|1NTO|A Chain A, N249y Mutant Of Alcohol Dehydrogenase From The Archaeon Sulfolobus Solfataricus-Monoclinic Crystal Form Length = 347

Iteration: 1
 Score = 48.1 bits (113), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 82/335 (24%), Positives = 128/335 (38%), Gaps = 49/335 (14%)
Query: 102 EKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKF------KATDSPLPTXXXXXXXXXXX 155
           +++ VP+ K  QVLIKV AA +   D   RQG+F      +     LP            
Sbjct: 16  QEIGVPKPKGPQVLIKVEAAGVCHSDVHMRQGRFGNLRIVEDLGVKLPVTLGHEIAGKIE 75
Query: 156 XXXXXXKEFKEGDEV------------YGDINEKAL-EGPKQFG-----SLAEYTAVEER 197
                   + +GD V            Y  I E+ L + P+  G     + AEY  V   
Sbjct: 76  EVGDEVVGYSKGDLVAVNPWQGEGNCYYCRIGEEHLCDSPRWLGINFDGAYAEYVIVPHY 135
Query: 198 LLAPKPKNLDFVQAAGLPLAIETAYEGLERTGFSAGKXXXXXXXXXXXXXXXXQLAKQVF 257
               K + L+ V+AA L  +  T Y  + +      K                Q+AK V 
Sbjct: 136 KYMYKLRRLNAVEAAPLTCSGITTYRAVRKASLDPTKTLLVVGAGGGLGTMAVQIAKAVS 195
Query: 258 GASRVAATSSTRNLEFLKSLGADLAIDYT-KDNFEDL-----PEKFDVVYDAIGQCDRAV 311
           GA+ +        +E  K  GAD  I+ + +D   ++      +  D V D +   ++ +
Sbjct: 196 GATIIGVDVREEAVEAAKRAGADYVINASMQDPLAEIRRITESKGVDAVID-LNYSEKTL 254
Query: 312 ----KAIKEGG--TVVALTGA--------VTPPGFRFV--VTSNGEVLKKLNPYLESGKV 355
               KA+ + G   +V L GA        +T    +FV  +  N      +    E+GKV
Sbjct: 255 SVYPKALAKQGKYVMVGLFGADLHYHAPLITLSEIQFVGSLVGNQSDFLGIMRLAEAGKV 314
Query: 356 KPIIDPKGPFPFSQVVEAFSYIETNKATGKVVIHP 390
           KP+I         +  EA   +E  KA G+ V+ P
Sbjct: 315 KPMITKT--MKLEEANEAIDNLENFKAIGRQVLIP 347

>pdb|3I4C|A Chain A, Crystal Structure Of Sulfolobus Solfataricus Adh(Ssadh) Double Mutant (W95l,N249y) Length = 347

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 82/335 (24%), Positives = 128/335 (38%), Gaps = 49/335 (14%)
Query: 102 EKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKF------KATDSPLPTXXXXXXXXXXX 155
           +++ VP+ K  QVLIKV AA +   D   RQG+F      +     LP            
Sbjct: 16  QEIGVPKPKGPQVLIKVEAAGVCHSDVHMRQGRFGNLRIVEDLGVKLPVTLGHEIAGKIE 75
Query: 156 XXXXXXKEFKEGDEV------------YGDINEKAL-EGPKQFG-----SLAEYTAVEER 197
                   + +GD V            Y  I E+ L + P+  G     + AEY  V   
Sbjct: 76  EVGDEVVGYSKGDLVAVNPLQGEGNCYYCRIGEEHLCDSPRWLGINFDGAYAEYVIVPHY 135
Query: 198 LLAPKPKNLDFVQAAGLPLAIETAYEGLERTGFSAGKXXXXXXXXXXXXXXXXQLAKQVF 257
               K + L+ V+AA L  +  T Y  + +      K                Q+AK V 
Sbjct: 136 KYMYKLRRLNAVEAAPLTCSGITTYRAVRKASLDPTKTLLVVGAGGGLGTMAVQIAKAVS 195
Query: 258 GASRVAATSSTRNLEFLKSLGADLAIDYT-KDNFEDL-----PEKFDVVYDAIGQCDRAV 311
           GA+ +        +E  K  GAD  I+ + +D   ++      +  D V D +   ++ +
Sbjct: 196 GATIIGVDVREEAVEAAKRAGADYVINASMQDPLAEIRRITESKGVDAVID-LNYSEKTL 254
Query: 312 ----KAIKEGG--TVVALTGA--------VTPPGFRFV--VTSNGEVLKKLNPYLESGKV 355
               KA+ + G   +V L GA        +T    +FV  +  N      +    E+GKV
Sbjct: 255 SVYPKALAKQGKYVMVGLFGADLHYHAPLITLSEIQFVGSLVGNQSDFLGIMRLAEAGKV 314
Query: 356 KPIIDPKGPFPFSQVVEAFSYIETNKATGKVVIHP 390
           KP+I         +  EA   +E  KA G+ V+ P
Sbjct: 315 KPMITKT--MKLEEANEAIDNLENFKAIGRQVLIP 347

>pdb|1LLU|A Chain A, The Ternary Complex Of Pseudomonas Aeruginosa Alcohol Dehydrogenase With Its Coenzyme And Weak Substrate Length = 342

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 69/279 (24%), Positives = 104/279 (37%), Gaps = 35/279 (12%)
Query: 79  TVPSEMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKAT 138
           T+P  MKA +   YG    L+ +E V VP     QVL+K+ A+ +   D    +G +   
Sbjct: 2   TLPQTMKAAVVHAYGAP--LRIEE-VKVPLPGPGQVLVKIEASGVCHTDLHAAEGDWP-V 57
Query: 139 DSPLPTXXXXXXXXXXXXXXXXXKEFKEGDEV-------YGDINEKALEGPKQF------ 185
             PLP                     KEGD V            E  L G +        
Sbjct: 58  KPPLPFIPGHEGVGYVAAVGSGVTRVKEGDRVGIPWLYTACGCCEHCLTGWETLCESQQN 117
Query: 186 ------GSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLERTGFSAGKXXXXX 239
                 G  AEY   +   +   PKN++F + A +  A  T Y+GL++T    G+     
Sbjct: 118 TGYSVNGGYAEYVLADPNYVGILPKNVEFAEIAPILCAGVTVYKGLKQTNARPGQ-WVAI 176
Query: 240 XXXXXXXXXXXQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDN-----FEDLP 294
                      Q A+   G    A       LE  + LGA L ++  +++       D+ 
Sbjct: 177 SGIGGLGHVAVQYAR-AMGLHVAAIDIDDAKLELARKLGASLTVNARQEDPVEAIQRDIG 235
Query: 295 EKFDVVYDAIGQC--DRAVKAIKEGGTVVALTGAVTPPG 331
               V+  A+      +A+   + GGT +AL G   PPG
Sbjct: 236 GAHGVLVTAVSNSAFGQAIGMARRGGT-IALVG--LPPG 271

>pdb|1JVB|A Chain A, Alcohol Dehydrogenase From The Archaeon Sulfolobus Solfataricus Length = 347

Iteration: 1
 Score = 45.4 bits (106), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 84/336 (25%), Positives = 125/336 (37%), Gaps = 51/336 (15%)
Query: 102 EKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKF------KATDSPLPTXXXXXXXXXXX 155
           +++ VP+ K  QVLIKV AA +   D   RQG+F      +     LP            
Sbjct: 16  QEIGVPKPKGPQVLIKVEAAGVCHSDVHXRQGRFGNLRIVEDLGVKLPVTLGHEIAGKIE 75
Query: 156 XXXXXXKEFKEGDEV------------YGDINEKAL-EGPKQFG-----SLAEYTAVEER 197
                   + +GD V            Y  I E+ L + P+  G     + AEY  V   
Sbjct: 76  EVGDEVVGYSKGDLVAVNPWQGEGNCYYCRIGEEHLCDSPRWLGINFDGAYAEYVIVPHY 135
Query: 198 LLAPKPKNLDFVQAAGLPLAIETAYEGLERTGFSAGKXXXXXXXXXXXXXXXXQLAKQVF 257
               K + L+ V+AA L  +  T Y  + +      K                Q+AK V 
Sbjct: 136 KYXYKLRRLNAVEAAPLTCSGITTYRAVRKASLDPTKTLLVVGAGGGLGTXAVQIAKAVS 195
Query: 258 GASRVAATSSTRNLEFLKSLGADLAIDYTKDN----FEDLPEKFDVVYDAIGQCDRAVKA 313
           GA+ +        +E  K  GAD  I+ +  +       + E   V  DA+   + + K 
Sbjct: 196 GATIIGVDVREEAVEAAKRAGADYVINASMQDPLAEIRRITESKGV--DAVIDLNNSEKT 253
Query: 314 I--------KEGGTV-VALTGA--------VTPPGFRFV--VTSNGEVLKKLNPYLESGK 354
           +        K+G  V V L GA        +T    +FV  +  N      +    E+GK
Sbjct: 254 LSVYPKALAKQGKYVXVGLFGADLHYHAPLITLSEIQFVGSLVGNQSDFLGIXRLAEAGK 313
Query: 355 VKPIIDPKGPFPFSQVVEAFSYIETNKATGKVVIHP 390
           VKP I         +  EA   +E  KA G+ V+ P
Sbjct: 314 VKPXITKT--XKLEEANEAIDNLENFKAIGRQVLIP 347

>pdb|2EER|A Chain A, Structural Study Of Project Id St2577 From Sulfolobus Tokodaii Strain7 Length = 347

Iteration: 1
 Score = 45.1 bits (105), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 80/336 (23%), Positives = 123/336 (36%), Gaps = 51/336 (15%)
Query: 102 EKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKF------KATDSPLPTXXXXXXXXXXX 155
           E + +P+ K  QVLIK+ AA +   D   RQG+F      +     LP            
Sbjct: 16  EDIPIPKPKGSQVLIKIEAAGVCHSDVHMRQGRFGNLRIVEDLGVKLPVTLGHEIAGRIE 75
Query: 156 XXXXXXKEFKEGDEV------------YGDINEKAL-EGPKQFG-----SLAEYTAVEER 197
                   + +GD V            Y  I E+ L + P+  G     + AEY  V   
Sbjct: 76  EVGDEVVGYSKGDLVAVNPWEGEGNCYYCRIGEEHLCDSPRWLGINYDGAYAEYVLVPHY 135
Query: 198 LLAPKPKNLDFVQAAGLPLAIETAYEGLERTGFSAGKXXXXXXXXXXXXXXXXQLAKQVF 257
               K + L  V+AA L  +  T Y  + +      K                Q+AK V 
Sbjct: 136 KYLYKLRRLSAVEAAPLTCSGVTTYRAVRKASLDPSKTLVVIGAGGGLGTMAIQIAKAVS 195
Query: 258 GASRVAATSSTRNLEFLKSLGADLAIDYTKDNFEDLPEKFDVVY----DAIGQCDRAVKA 313
           GA+ +        LE  K  GAD  I+ +    + + E   +      DA+   + + K 
Sbjct: 196 GATIIGVDVREEALEAAKRAGADYVINASSQ--DPVSEIRRITQGKGADAVIDLNNSEKT 253
Query: 314 I--------KEGGTV-VALTGA--------VTPPGFRFV--VTSNGEVLKKLNPYLESGK 354
           +        K+G  V V L GA        +T    +F+  +  N      +    E+GK
Sbjct: 254 LSIYPYVLAKQGKYVMVGLFGADLKYHAPLITLNEVQFIGSLVGNQSDFLGIMSLAEAGK 313
Query: 355 VKPIIDPKGPFPFSQVVEAFSYIETNKATGKVVIHP 390
           VKP++         +  EA   +E  KA G+ V+ P
Sbjct: 314 VKPMVTKT--MKLEEANEAIDNLENFKAVGRQVLVP 347

>pdb|1IZ0|A Chain A, Crystal Structures Of The Quinone Oxidoreductase From Thermus Thermophilus Hb8 And Its Complex With Nadph Length = 302

Iteration: 1
 Score = 44.7 bits (104), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 83/333 (24%), Positives = 131/333 (39%), Gaps = 61/333 (18%)
Query: 85  KAWLYGEYGG-VDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLP 143
           KAW+    GG ++++   E    P+ +E +V+++V A  LN  D   R G +     P  
Sbjct: 2   KAWVLKRLGGPLELVDLPE----PEAEEGEVVLRVEAVGLNFADHLXRLGAYLTRLHP-- 55
Query: 144 TXXXXXXXXXXXXXXXXXKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKP 203
                               F  G EV G +  +        G LAE  AV +  L P P
Sbjct: 56  -------------------PFIPGXEVVGVVEGRRYAALVPQGGLAERVAVPKGALLPLP 96
Query: 204 KNLDFVQAAGLPLAIETAYEGLERTGFSAGKXXXXXXXXXXXXXXXXQLAKQVFGASRVA 263
           + L   +AA  P++  TAY  L+R     G+                Q+A+   G   +A
Sbjct: 97  EGLSPEEAAAFPVSFLTAYLALKRAQARPGEKVLVQAAAGALGTAAVQVARAX-GLRVLA 155
Query: 264 ATSSTRNLEFLKSLGADLAIDYTKDNFEDLPEK------FDVVYDAIG-QCDRAVKAIKE 316
           A S    L    +LGA+ A  Y      ++PE+       D+V +  G + + ++  +  
Sbjct: 156 AASRPEKLALPLALGAEEAATYA-----EVPERAKAWGGLDLVLEVRGKEVEESLGLLAH 210
Query: 317 GGTVV---ALTGAVTP-PGFRFVVTSNGEVLKKLNPYLESG----------------KVK 356
           GG +V   A  G V P P  R    +   +   L P L  G                +++
Sbjct: 211 GGRLVYIGAAEGEVAPIPPLRLXRRNLAVLGFWLTPLLREGALVEEALGFLLPRLGRELR 270
Query: 357 PIIDPKGPFPFSQVVEAFSYIETNKATGKVVIH 389
           P++ P   FPF++   AF  +     TGKVV+ 
Sbjct: 271 PVVGPV--FPFAEAEAAFRALLDRGHTGKVVVR 301

>pdb|1RJW|A Chain A, Crystal Structure Of Nad(+)-Dependent Alcohol Dehydrogenase From Bacillus Stearothermophilus Strain Lld-R Length = 339

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 60/225 (26%), Positives = 90/225 (40%), Gaps = 30/225 (13%)
Query: 186 GSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLERTGFSAGKXXXXXXXXXXX 245
           G  AEY       +   P NL F +AA +  A  T Y+ L+ TG   G+           
Sbjct: 118 GGYAEYCRAAADYVVKIPDNLSFEEAAPIFCAGVTTYKALKVTGAKPGE-WVAIYGIGGL 176
Query: 246 XXXXXQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTK-DNFEDLPEKFDVVYDAI 304
                Q AK   G + VA       LE  K LGADL ++  K D  + + EK   V+ A+
Sbjct: 177 GHVAVQYAK-AMGLNVVAVDIGDEKLELAKELGADLVVNPLKEDAAKFMKEKVGGVHAAV 235
Query: 305 GQC------DRAVKAIKEGGTVVALTGAVTPP-------------GFRFV--VTSNGEVL 343
                      A  +I+ GG  V L G   PP             G + +  +    + L
Sbjct: 236 VTAVSKPAFQSAYNSIRRGGACV-LVG--LPPEEMPIPIFDTVLNGIKIIGSIVGTRKDL 292
Query: 344 KKLNPYLESGKVKPIIDPKGPFPFSQVVEAFSYIETNKATGKVVI 388
           ++   +   GKVK II+ +   P  ++ E F  +   +  G+VV+
Sbjct: 293 QEALQFAAEGKVKTIIEVQ---PLEKINEVFDRMLKGQINGRVVL 334

>pdb|3HZZ|A Chain A, 2.4 Angstrom Crystal Structure Of Streptomyces Collinus Crotonyl Coa CarboxylaseREDUCTASE Length = 467

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 61/235 (25%), Positives = 89/235 (37%), Gaps = 49/235 (20%)
Query: 184 QFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGL-ERTG--FSAGKXXXXXX 240
            FG LAE   V+   L PKPK+L + +AA   L   TAY  L  R G     G       
Sbjct: 195 NFGGLAEIALVKTNQLMPKPKHLTWEEAAAPGLVNSTAYRQLVSRNGAAMKQGDNVLIWG 254
Query: 241 XXXXXXXXXXQLAKQVFGASRVAATSSTRNLEFLKSLGADLAID-------YTKDNFEDL 293
                     Q A    GA+ +   SS +  E  +S+GA+  ID       + KD     
Sbjct: 255 ASGGLGSYATQFA-LAGGANPICVVSSPQKAEICRSMGAEAIIDRNAEGYKFWKDEHTQD 313
Query: 294 P----------------EKFDVVYDAIGQ--CDRAVKAIKEGGTVVALTGAVTPPGFRFV 335
           P                E  D+V++  G+     +V   ++GGT+               
Sbjct: 314 PKEWKRFGKRIRELTGGEDIDIVFEHPGRETFGASVYVTRKGGTITT------------C 361
Query: 336 VTSNGEVLKKLNPYLESGKVKPIIDPKGPFPFSQVVEAFSYIETNKATGKVVIHP 390
            +++G + +  N YL    +K II       F+   EA+   E N+   K  IHP
Sbjct: 362 ASTSGYMHEYDNRYLWM-SLKRIIGSH----FANYREAY---EANRLIAKGKIHP 408

>pdb|3PII|A Chain A, Crystal Structure Of Mutant Of Ht- Alcohol Dehydrogenase With Substrate Analogue Butyramide Length = 339

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 60/225 (26%), Positives = 90/225 (40%), Gaps = 30/225 (13%)
Query: 186 GSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLERTGFSAGKXXXXXXXXXXX 245
           G  AEY       +   P NL F +AA +  A  T Y+ L+ TG   G+           
Sbjct: 118 GGYAEYCRAAADYVVKIPDNLSFEEAAPIFCAGVTTYKALKVTGAKPGE-WVAIYGIGGF 176
Query: 246 XXXXXQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTK-DNFEDLPEKFDVVYDAI 304
                Q AK   G + VA       LE  K LGADL ++  K D  + + EK   V+ A+
Sbjct: 177 GHVAVQYAK-AMGLNVVAVDIGDEKLELAKELGADLVVNPLKEDAAKFMKEKVGGVHAAV 235
Query: 305 GQC------DRAVKAIKEGGTVVALTGAVTPP-------------GFRFV--VTSNGEVL 343
                      A  +I+ GG  V L G   PP             G + +  +    + L
Sbjct: 236 VTAVSKPAFQSAYNSIRRGGACV-LVG--LPPEEMPIPIFDTVLNGIKIIGSIVGTRKDL 292
Query: 344 KKLNPYLESGKVKPIIDPKGPFPFSQVVEAFSYIETNKATGKVVI 388
           ++   +   GKVK II+ +   P  ++ E F  +   +  G+VV+
Sbjct: 293 QEALQFAAEGKVKTIIEVQ---PLEKINEVFDRMLKGQINGRVVL 334

>pdb|1PS0|A Chain A, Crystal Structure Of The Nadp(H)-Dependent Cinnamyl Alcohol Dehydrogenase From Saccharomyces Cerevisiae Length = 360

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 40/148 (27%), Positives = 58/148 (39%), Gaps = 13/148 (8%)
Query: 186 GSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLERTGFSAGKXXXXXXXXXXX 245
           G  A Y  V E  + P P+N+    AA L     T Y  L R G   GK           
Sbjct: 133 GGYANYVRVHEHFVVPIPENIPSHLAAPLLCGGLTVYSPLVRNGCGPGKKVGIVGLGGIG 192
Query: 246 XXXXXQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFEDLPEKFDVVYDAIG 305
                 L  +  GA     + S+R  E    +GAD  I   ++   D  EK+   +D I 
Sbjct: 193 SMGT--LISKAMGAETYVISRSSRKREDAMKMGADHYIATLEEG--DWGEKYFDTFDLIV 248
Query: 306 QCDRAV---------KAIKEGGTVVALT 324
            C  ++         KA+K GG +V+++
Sbjct: 249 VCASSLTDIDFNIMPKAMKVGGRIVSIS 276

>pdb|4EYE|A Chain A, Crystal Structure Of A Probable Oxidoreductase From Mycobacterium Abscessus Solved By Iodide Ion Sad Length = 342

Iteration: 1
 Score = 41.2 bits (95), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 61/233 (26%), Positives = 90/233 (38%), Gaps = 28/233 (12%)
Query: 185 FGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLERTG-FSAGKXXXXXXXXX 243
            G  AE  AV    + P P  LD  +A  L     T Y    R G   AG+         
Sbjct: 111 IGGYAERVAVAPSNILPTPPQLDDAEAVALIANYHTMYFAYARRGQLRAGETVLVLGAAG 170
Query: 244 XXXXXXXQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFEDLPEK-----FD 298
                  Q+AK   GA  +A  + T   EF+KS+GAD+ +   +   + + E       D
Sbjct: 171 GIGTAAIQIAKG-MGAKVIAVVNRTAATEFVKSVGADIVLPLEEGWAKAVREATGGAGVD 229
Query: 299 VVYDAIG--QCDRAVKAI-KEGGTVVALTGAVTPPGFR----------FVVTSNGEVLKK 345
           +V D IG    D AV+ +  EG  +V    A   P  +           +  + GE L+ 
Sbjct: 230 MVVDPIGGPAFDDAVRTLASEGRLLVVGFAAGGIPTIKVNRLLLRNASLIGVAWGEFLRT 289
Query: 346 LNPYL---ESGKVKPIIDPKGP-----FPFSQVVEAFSYIETNKATGKVVIHP 390
              YL   ++G  K + +   P      P S+  +A       K  GK+V+ P
Sbjct: 290 HADYLYETQAGLEKLVAEGMRPPVSARIPLSEGRQALQDFADGKVYGKMVLVP 342

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	392
3tqh_A	321	Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella	1e-123
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	1e-109
2vn8_A	375	Reticulon-4-interacting protein 1; mitochondrion,	1e-108
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	1e-105
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	1e-105
3gaz_A	343	Alcohol dehydrogenase superfamily protein; oxidore	1e-103
3gqv_A	371	Enoyl reductase; medium-chain reductase (MDR super	8e-86
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	6e-83
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	2e-76
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	9e-76
4a0s_A	447	Octenoyl-COA reductase/carboxylase; oxidoreductase	1e-75
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	2e-74
4a27_A	349	Synaptic vesicle membrane protein VAT-1 homolog-L;	4e-73
3krt_A	456	Crotonyl COA reductase; structural genomics, prote	9e-73
1zsy_A	357	Mitochondrial 2-enoyl thioester reductase; medium-	4e-72
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	1e-68
4eye_A	342	Probable oxidoreductase; structural genomics, niai	3e-68
3pi7_A	349	NADH oxidoreductase; groes-like fold, NAD(P)-bindi	2e-67
3gms_A	340	Putative NADPH:quinone reductase; structural genom	2e-67
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	1e-59
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	3e-59
1gu7_A	364	Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s	1e-58
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	2e-55
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	3e-55
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	4e-55
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	7e-54
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	7e-51
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	1e-45
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	8e-41
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	2e-39
3iup_A	379	Putative NADPH:quinone oxidoreductase; YP_296108.1	6e-39
1h2b_A	359	Alcohol dehydrogenase; oxidoreductase, archaea, hy	1e-38
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	4e-38
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	5e-36
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	1e-34
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	1e-34
3slk_A	795	Polyketide synthase extender module 2; rossmann fo	2e-34
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	8e-34
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	6e-31
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	1e-30
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	4e-30
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	4e-30
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	6e-30
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	2e-28
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	2e-28
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	1e-27
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	1e-25
1tt7_A	330	YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st	9e-21
3nx4_A	324	Putative oxidoreductase; csgid, structural genomic	2e-20
1xa0_A	328	Putative NADPH dependent oxidoreductases; structur	5e-20
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	3e-16
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	1e-14
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	1e-14
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	1e-14
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	1e-14
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	2e-14
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	8e-14
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	4e-12
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	4e-12
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	2e-10
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	2e-10
2j3h_A	345	NADP-dependent oxidoreductase P1; double bond redu	3e-10
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	7e-10
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	8e-10
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	4e-09
2zb4_A	357	Prostaglandin reductase 2; rossmann fold, alternat	6e-09
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	2e-07

>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii} Length = 321

 Score =  358 bits (920), Expect = e-123
 Identities = 105/325 (32%), Positives = 155/325 (47%), Gaps = 27/325 (8%)

Query: 81  PSEMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKA--- 137
             EMKA  + ++G   VLK  +    P+ +++Q+LIKV AA+LNP+D K R G       
Sbjct: 4   MKEMKAIQFDQFGPPKVLKLVD-TPTPEYRKNQMLIKVHAASLNPIDYKTRNGSGFVAKK 62

Query: 138 TDSPLPTVPGYDVAGVVVKVGTQVKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEER 197
             + LP+  GYD +G V+++G+ V     GD+V G         P      AEY      
Sbjct: 63  LKNNLPSGLGYDFSGEVIELGSDVNNVNIGDKVMGIAG-----FPDHPCCYAEYVCASPD 117

Query: 198 LLAPKPKNLDFVQAAGLPLAIETAYEGLERTGFSAGKSILVLNGSGGVGSLVIQLAKQVF 257
            +  K + L F+QAA LP A  TA + L +     G  +L+  G+GGVG L IQLAKQ  
Sbjct: 118 TIIQKLEKLSFLQAASLPTAGLTALQALNQAEVKQGDVVLIHAGAGGVGHLAIQLAKQ-K 176

Query: 258 GASRVAATSSTRNLEFLKSLGADLAIDYTKDNFED-LPEKFDVVYDAIGQ--CDRAVKAI 314
           G   V  T+S RN  FLK+LGA+  I+Y +++F   +    D V D +G     +++  +
Sbjct: 177 GT-TVITTASKRNHAFLKALGAEQCINYHEEDFLLAISTPVDAVIDLVGGDVGIQSIDCL 235

Query: 315 KEGGTVVALTGAVTPP-----------GFRFVVTSNGEVLKKLNPYLESGKVKPIIDPKG 363
           KE G +V++                   F  +   N E L  L   +   K++  I    
Sbjct: 236 KETGCIVSVPTITAGRVIEVAKQKHRRAFGLLKQFNIEELHYLGKLVSEDKLRIEIS--R 293

Query: 364 PFPFSQVVEAFSYIETNKATGKVVI 388
            F  S+ V A   +ET    GK+V 
Sbjct: 294 IFQLSEAVTAHELLETGHVRGKLVF 318

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis} Length = 315

 Score =  321 bits (824), Expect = e-109
 Identities = 72/330 (21%), Positives = 127/330 (38%), Gaps = 43/330 (13%)

Query: 84  MKAWLYGEYGG-VDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPL 142
           M+      Y      +  +  V +P +  D +L++  A  +NPVD K  +      +   
Sbjct: 2   MEQHQVWAYQTKTHSVTLNS-VDIPALAADDILVQNQAIGINPVDWKFIKANPI--NWSN 58

Query: 143 PTVPGYDVAGVVVKVGTQVKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPK 202
             VPG D AGV+VKVG +V     G  V            K+ GS AE+T +    +   
Sbjct: 59  GHVPGVDGAGVIVKVGAKVDSKMLGRRVAYHT------SLKRHGSFAEFTVLNTDRVMTL 112

Query: 203 PKNLDFVQAAGLPLAIETAYEGLERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRV 262
           P NL F +AA LP  + TA++  E+   +  + +L+  G G V +L+ Q+     G   V
Sbjct: 113 PDNLSFERAAALPCPLLTAWQAFEKIPLTKQREVLI-VGFGAVNNLLTQMLNN-AGY-VV 169

Query: 263 AATSSTRNLEFLKSLGADLAIDYTKDNFEDLPEKFDVVYDAIGQC--DRAVKAIKEGGTV 320
              S++ +       G      +       + +K+  ++DA+        V ++K  G +
Sbjct: 170 DLVSASLSQALAAKRGV----RHLYREPSQVTQKYFAIFDAVNSQNAAALVPSLKANGHI 225

Query: 321 VALTGAVTPP----------------------GFRFVVTSNGEVLKKLNPYLESGKVKPI 358
           + +   +  P                      G R       +  + L   +  GK++  
Sbjct: 226 ICIQDRIPAPIDPAFTRTISYHEIALGALHDFGDRQDWQILMQQGEALLTLIAQGKMEIA 285

Query: 359 IDPKGPFPFSQVVEAFSYIETNKATGKVVI 388
                 F F Q++EA  + E  K    + +
Sbjct: 286 AP--DIFRFEQMIEALDHSEQTKLKTVLTL 313

>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens} Length = 375

 Score =  321 bits (825), Expect = e-108
 Identities = 107/366 (29%), Positives = 165/366 (45%), Gaps = 66/366 (18%)

Query: 79  TVPSEMKAWLYGEYGGVDVLKFDEKVTVPQVK-EDQVLIKVVAAALNPVDGKRRQGKFKA 137
            +  +  AW+  +YG  +VL+F + + +P +   ++V++KV AA++NP+D   R G    
Sbjct: 17  NLYFQSMAWVIDKYGKNEVLRFTQNMMMPIIHYPNEVIVKVHAASVNPIDVNMRSGYGAT 76

Query: 138 -------------TDSPLPTVPGYDVAGVVVKVGTQVKEFKEGDEVYGDINEKALEGPKQ 184
                             P   G DV+GVV++ G  VK FK GDEV+  +       P +
Sbjct: 77  ALNMKRDPLHVKIKGEEFPLTLGRDVSGVVMECGLDVKYFKPGDEVWAAV------PPWK 130

Query: 185 FGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLERTG-----FSAGKSILVL 239
            G+L+E+  V    ++ KPK+L   QAA LP    TA+  + + G        GK +L+L
Sbjct: 131 QGTLSEFVVVSGNEVSHKPKSLTHTQAASLPYVALTAWSAINKVGGLNDKNCTGKRVLIL 190

Query: 240 NGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFEDL---PEK 296
             SGGVG+  IQ+ K  + A  V A  S    E ++ LGAD  IDY   + E+     + 
Sbjct: 191 GASGGVGTFAIQVMKA-WDA-HVTAVCSQDASELVRKLGADDVIDYKSGSVEEQLKSLKP 248

Query: 297 FDVVYDAIGQ--CDRAVKAIKE--GGTVVALTGAVTPPGFR------------------- 333
           FD + D +G      A   +K+  G T V L         R                   
Sbjct: 249 FDFILDNVGGSTETWAPDFLKKWSGATYVTLVTPFLLNMDRLGIADGMLQTGVTVGSKAL 308

Query: 334 -----------FVVTSNGEVLKKLNPYLESGKVKPIIDPKGPFPFSQVVEAFSYIETNKA 382
                          ++G  L  +   +++GK++P+I+    FPFS+V EAF  +E   A
Sbjct: 309 KHFWKGVHYRWAFFMASGPCLDDIAELVDAGKIRPVIEQT--FPFSKVPEAFLKVERGHA 366

Query: 383 TGKVVI 388
            GK VI
Sbjct: 367 RGKTVI 372

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus} Length = 346

 Score =  313 bits (804), Expect = e-105
 Identities = 95/346 (27%), Positives = 153/346 (44%), Gaps = 54/346 (15%)

Query: 84  MKAWLYGEYGGV---DVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDS 140
           +KA  + +   +   ++ K    + +P+ K  ++L+K+ + ++NPVD K+R         
Sbjct: 3   LKAIGFEQPFKLSDGNLFKTFN-LDIPEPKVHEILVKIQSISVNPVDTKQRLMDVS---- 57

Query: 141 PLPTVPGYDVAGVVVKVGTQVKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLA 200
             P V G+D  GVV  VG +V  F +GD VY   +      P Q GS AEY  + ERL+A
Sbjct: 58  KAPRVLGFDAIGVVESVGNEVTMFNQGDIVYYSGS------PDQNGSNAEYQLINERLVA 111

Query: 201 PKPKNLDFVQAAGLPLAIETAYEGL-ERTGFS------AGKSILVLNGSGGVGSLVIQLA 253
             PKN+   QA  LPL   TAYE L +  G S       GK++L++NG+GGVGS+  Q+A
Sbjct: 112 KAPKNISAEQAVSLPLTGITAYETLFDVFGISRNRNENEGKTLLIINGAGGVGSIATQIA 171

Query: 254 KQVFGASRVAAT-SSTRNLEFLKSLGADLAIDYTKDNFEDL----PEKFDVVYDAIG--- 305
           K  +G  RV  T S    +E+ K +GAD+ +++ +           E  D V+       
Sbjct: 172 KA-YGL-RVITTASRNETIEWTKKMGADIVLNHKESLLNQFKTQGIELVDYVFCTFNTDM 229

Query: 306 QCDRAVKAIKEGGTVVALTGAVTPP------------GFRFVVT----------SNGEVL 343
             D  ++ +K  G +  +                      F+             + E L
Sbjct: 230 YYDDMIQLVKPRGHIATIVAFENDQDLNALKPKSLSFSHEFMFARPLNQTDDMIKHHEYL 289

Query: 344 KKLNPYLESGKVKPIIDP-KGPFPFSQVVEAFSYIETNKATGKVVI 388
           + +   +E    +P             + +A   +E+N   GK+VI
Sbjct: 290 EDITNKVEQNIYQPTTTKVIEGLTTENIYQAHQILESNTMIGKLVI 335

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli} Length = 363

 Score =  313 bits (804), Expect = e-105
 Identities = 94/359 (26%), Positives = 155/359 (43%), Gaps = 47/359 (13%)

Query: 68  SSTEAEPTKVGTVPSEMKAWLYGEYGGVD---VLKFDEKVTVPQVKEDQVLIKVVAAALN 124
            S+  +          MKA  Y +   +     L  D ++  P      +L++V A ++N
Sbjct: 7   HSSGVDLGTENLYFQSMKAVGYNKPAPITDDASLL-DIELPKPAPAGHDILVEVKAVSVN 65

Query: 125 PVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKEFKEGDEVYGDINEKALEGPKQ 184
           PVD K R+      D     V GYD AG+V  VG  V  F+ GDEV+      A    + 
Sbjct: 66  PVDYKVRRSTPP--DGTDWKVIGYDAAGIVSAVGPDVTLFRPGDEVFY-----AGSIIRP 118

Query: 185 FGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGL------ERTGFSAGKSILV 238
            G+ AE+  V+ER++  KPK LD+ +AA LPL   TA+E         +    A  +IL+
Sbjct: 119 -GTNAEFHLVDERIVGRKPKTLDWAEAAALPLTSITAWEAFFDRLDVNKPVPGAAPAILI 177

Query: 239 LNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFEDL----P 294
           + G+GGVGS+ +Q+A+Q    + +A  S     E++KSLGA   ID++K    ++     
Sbjct: 178 VGGAGGVGSIAVQIARQRTDLTVIATASRPETQEWVKSLGAHHVIDHSKPLAAEVAALGL 237

Query: 295 EKFDVVYDAIG---QCDRAVKAIKEGGTVVALTGAV--------------------TPPG 331
                V+               I   G    +                        T P 
Sbjct: 238 GAPAFVFSTTHTDKHAAEIADLIAPQGRFCLIDDPSAFDIMLFKRKAVSIHHELMFTRPM 297

Query: 332 FRFV-VTSNGEVLKKLNPYLESGKVKPIIDPK-GPFPFSQVVEAFSYIETNKATGKVVI 388
           F    ++  G +L  ++  ++ G+++  +  +  P   + + +A + +E+  A GKVVI
Sbjct: 298 FGTPDMSEQGRLLNDVSRLVDEGRLRTTLTNRLSPINAANLKQAHALVESGTARGKVVI 356

>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans} Length = 343

 Score =  308 bits (791), Expect = e-103
 Identities = 106/339 (31%), Positives = 163/339 (48%), Gaps = 41/339 (12%)

Query: 81  PSEMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDS 140
              M A +  E  G  VL    K+  PQ    QVL+++ A+  NP+D K R G+      
Sbjct: 5   TPTMIAAVVEEANGPFVL---RKLARPQPAPGQVLVQIEASGTNPLDAKIRAGEAPHAQQ 61

Query: 141 PLPTVPGYDVAGVVVKVGTQVKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLA 200
           PLP + G D+AG VV VG +V  F+ GD V+G             G+ A++ AV+ RLLA
Sbjct: 62  PLPAILGMDLAGTVVAVGPEVDSFRVGDAVFGLTG----GVGGLQGTHAQFAAVDARLLA 117

Query: 201 PKPKNLDFVQAAGLPLAIETAYEGL-ERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGA 259
            KP  L   QA+ LPL   TA+EGL +R     G+++L+  G GGVG + IQ+A    GA
Sbjct: 118 SKPAALTMRQASVLPLVFITAWEGLVDRAQVQDGQTVLIQGGGGGVGHVAIQIALA-RGA 176

Query: 260 SRVAATSSTRNLEFLKSLGADLAIDYTKDNF----EDLPEKFDVVYDAIGQ--CDRAVKA 313
            RV AT+   +LE+++ LGA       +           + FD+VYD +G    D +  A
Sbjct: 177 -RVFATARGSDLEYVRDLGATPIDASREPEDYAAEHTAGQGFDLVYDTLGGPVLDASFSA 235

Query: 314 IKEGGTVV------------------ALTGAVT--PPGFRFVVTSNGEVLKKLNPYLESG 353
           +K  G VV                    +G  T         +   GE+L++ +  +++G
Sbjct: 236 VKRFGHVVSCLGWGTHKLAPLSFKQATYSGVFTLHTLLANEGLAHFGEMLREADALVQTG 295

Query: 354 KVKPIIDPKGPFPFSQVVEAFSYI----ETNKATGKVVI 388
           K+ P +DP+  F  +++  A+  +    +  +  GK+ I
Sbjct: 296 KLAPRLDPR-TFSIAEIGSAYDAVLGRNDVPRQRGKIAI 333

>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A* Length = 371

 Score =  264 bits (676), Expect = 8e-86
 Identities = 86/361 (23%), Positives = 128/361 (35%), Gaps = 64/361 (17%)

Query: 81  PSEMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDS 140
           P +  A    ++  V V         P +  DQV ++V A A+NP D   R         
Sbjct: 9   PPQQTALTVNDHDEVTVW---NAAPCPMLPRDQVYVRVEAVAINPSDTSMRGQFA----- 60

Query: 141 PLPTVPGYDVAGVVVKVGTQVKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLA 200
                 G D AG VV VG+ V   + GD VYG  NE     P Q G+ ++YT    R+ A
Sbjct: 61  TPWAFLGTDYAGTVVAVGSDVTHIQVGDRVYGAQNEMCPRTPDQ-GAFSQYTVTRGRVWA 119

Query: 201 PKPKNLDFVQAAGLPLAIETAYEGLERTGF-------------SAGKSILVLNGSGGVGS 247
             PK L F QAA LP  I TA   ++  G              S    +LV  GS    +
Sbjct: 120 KIPKGLSFEQAAALPAGISTAGLAMKLLGLPLPSPSADQPPTHSKPVYVLVYGGSTATAT 179

Query: 248 LVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFED-----LPEKFDVVYD 302
           + +Q+ +   G     AT S  N +  KS GA+   DY   N                 D
Sbjct: 180 VTMQMLRL-SGY-IPIATCSPHNFDLAKSRGAEEVFDYRAPNLAQTIRTYTKNNLRYALD 237

Query: 303 AIGQCD---RAVKAI-KEGGTVVALTGAVTPPGFRFVVTSNG------------------ 340
            I   +       AI + GG  V+L         R +VT++                   
Sbjct: 238 CITNVESTTFCFAAIGRAGGHYVSLNPFPEHAATRKMVTTDWTLGPTIFGEGSTWPAPYG 297

Query: 341 ------------EVLKKLNPYLESGKVKPIIDPKGPFPFSQVVEAFSYIETNKATG-KVV 387
                       ++ +     +E G++           F  + +    +   + +G K+V
Sbjct: 298 RPGSEEERQFGEDLWRIAGQLVEDGRLVHHPLRVVQGGFDHIKQGMELVRKGELSGEKLV 357

Query: 388 I 388
           +
Sbjct: 358 V 358

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus} Length = 343

 Score =  255 bits (655), Expect = 6e-83
 Identities = 104/346 (30%), Positives = 154/346 (44%), Gaps = 47/346 (13%)

Query: 84  MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLP 143
           M+A +    GG +VL+  + + VP+    +V +++ AAALN +D   R+G       PLP
Sbjct: 1   MRAVVMRARGGPEVLEVAD-LPVPEPGPKEVRVRLKAAALNHLDVWVRKGVASPKL-PLP 58

Query: 144 TVPGYDVAGVVVKVGTQVKEFKEGDEVYGDINEKALEGPKQF------------------ 185
            V G D +GVV  VG  V+ F  GDEV  +         +                    
Sbjct: 59  HVLGADGSGVVDAVGPGVEGFAPGDEVVINPGLSCGRCERCLAGEDNLCPRYQILGEHRH 118

Query: 186 GSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGL-ERTGFSAGKSILVLNGSGG 244
           G+ AEY  + E  LAPKPKNL F +AA +PL   TA++ + ++ G   G  +LV+    G
Sbjct: 119 GTYAEYVVLPEANLAPKPKNLSFEEAAAIPLTFLTAWQMVVDKLGVRPGDDVLVMAAGSG 178

Query: 245 VGSLVIQLAKQVFGASRVAATSST-RNLEFLKSLGADLAIDYTKDNFEDL------PEKF 297
           V    IQ+AK  FGA RV AT+ +   L   K+LGAD  ++YT  ++          +  
Sbjct: 179 VSVAAIQIAKL-FGA-RVIATAGSEDKLRRAKALGADETVNYTHPDWPKEVRRLTGGKGA 236

Query: 298 DVVYDAIGQC--DRAVKAIKEGGTVV---ALTGAVTPPGFRFVVTSNG----------EV 342
           D V D  G    +  +KA   GG +    A +G      F  V                 
Sbjct: 237 DKVVDHTGALYFEGVIKATANGGRIAIAGASSGYEGTLPFAHVFYRQLSILGSTMASKSR 296

Query: 343 LKKLNPYLESGKVKPIIDPKGPFPFSQVVEAFSYIETNKATGKVVI 388
           L  +  ++E GK+KP++      P     E    +E  +  GKVV+
Sbjct: 297 LFPILRFVEEGKLKPVVGQV--LPLEAAAEGHRLLEERRVFGKVVL 340

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} Length = 363

 Score =  239 bits (613), Expect = 2e-76
 Identities = 96/375 (25%), Positives = 157/375 (41%), Gaps = 60/375 (16%)

Query: 52  SYLPLGVQASASQAAASSTEAEPTKVGTVPSEMKAWLYGEYGGVDVLKFDEKVTVPQVKE 111
           S + LG +    Q+              +   M+ W   E      LK  E   VP+  E
Sbjct: 9   SGVDLGTENLYFQS-------------MMSKWMQEWST-ETVAPHDLKLAE-RPVPEAGE 53

Query: 112 DQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKEFKEGDEVY 171
             ++++ +A +LN  D    +      D   P VP  D++GVV  VG  V  F+ GD V 
Sbjct: 54  HDIIVRTLAVSLNYRDKLVLETGM-GLDLAFPFVPASDMSGVVEAVGKSVTRFRPGDRVI 112

Query: 172 GDINEKALEGPKQF---------------GSLAEYTAVEERLLAPKPKNLDFVQAAGLPL 216
                  L+G +                 G L+EY  + E      PK+LD  +A+ LP 
Sbjct: 113 STFAPGWLDGLRPGTGRTPAYETLGGAHPGVLSEYVVLPEGWFVAAPKSLDAAEASTLPC 172

Query: 217 AIETAYEGL-ERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSST-RNLEFL 274
           A  TA+  L E+    AG  ++V  G+GGV    +Q+AK   GA  V  TSS+   L+  
Sbjct: 173 AGLTAWFALVEKGHLRAGDRVVVQ-GTGGVALFGLQIAKA-TGA-EVIVTSSSREKLDRA 229

Query: 275 KSLGADLAIDYTKDNFEDL------PEKFDVVYDAIGQ--CDRAVKAIKEGGTVV---AL 323
            +LGAD  I+  ++++ +           D + +  G     +++KA+   G +     L
Sbjct: 230 FALGADHGINRLEEDWVERVYALTGDRGADHILEIAGGAGLGQSLKAVAPDGRISVIGVL 289

Query: 324 TGAVTPPGFRFVVTSNGEV----------LKKLNPYLESGKVKPIIDPKGPFPFSQVVEA 373
            G         ++  +  V          L+ L   ++   +KP+ID    + F++V EA
Sbjct: 290 EGFEVSGPVGPLLLKSPVVQGISVGHRRALEDLVGAVDRLGLKPVID--MRYKFTEVPEA 347

Query: 374 FSYIETNKATGKVVI 388
            ++++     GKVVI
Sbjct: 348 LAHLD-RGPFGKVVI 361

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 Length = 351

 Score =  237 bits (608), Expect = 9e-76
 Identities = 94/338 (27%), Positives = 149/338 (44%), Gaps = 41/338 (12%)

Query: 79  TVPSEMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKAT 138
           T    M+A    E+GG +VLK    + VP  K+ QVLIKV A  +NPV+   R G + + 
Sbjct: 25  TGQKLMRAVRVFEFGGPEVLKLRSDIAVPIPKDHQVLIKVHACGVNPVETYIRSGTY-SR 83

Query: 139 DSPLPTVPGYDVAGVVVKVGTQVKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERL 198
              LP  PG DVAGV+  VG     FK+GD V+      +       G  AEY    +  
Sbjct: 84  KPLLPYTPGSDVAGVIEAVGDNASAFKKGDRVFT-----SSTIS---GGYAEYALAADHT 135

Query: 199 LAPKPKNLDFVQAAGLPLAIETAYEGL-ERTGFSAGKSILVLNGSGGVGSLVIQLAKQVF 257
           +   P+ LDF Q A + +   TAY  L       AG+S+LV   SGGVG    Q+A+  +
Sbjct: 136 VYKLPEKLDFKQGAAIGIPYFTAYRALIHSACVKAGESVLVHGASGGVGLAACQIARA-Y 194

Query: 258 GASRVAAT-SSTRNLEFLKSLGADLAIDYTKDNFEDLPEKF------DVVYDAIGQ--CD 308
           G  ++  T  +    + +   GA    ++ + N+ D  +K+      D++ + +      
Sbjct: 195 GL-KILGTAGTEEGQKIVLQNGAHEVFNHREVNYIDKIKKYVGEKGIDIIIEMLANVNLS 253

Query: 309 RAVKAIKEGGTVV--ALTGAVTPPG---------------FRFVVTSNGEVLKKLNPYLE 351
           + +  +  GG V+     G +                   F        +    L   +E
Sbjct: 254 KDLSLLSHGGRVIVVGSRGTIEINPRDTMAKESSIIGVTLFSSTKEEFQQYAAALQAGME 313

Query: 352 SGKVKPIIDPKGPFPFSQVVEAF-SYIETNKATGKVVI 388
            G +KP+I  +  +P  +V EA  + I  + ATGK+++
Sbjct: 314 IGWLKPVIGSQ--YPLEKVAEAHENIIHGSGATGKMIL 349

>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A Length = 447

 Score =  240 bits (614), Expect = 1e-75
 Identities = 100/412 (24%), Positives = 154/412 (37%), Gaps = 90/412 (21%)

Query: 63  SQAAASSTEAEPTKVGTVPSEMKAWL-----------YGEYGGVDVLKFDEKVTVPQVKE 111
           S+A      A   +   VP    A               +      L+  E V +P++  
Sbjct: 4   SRAVLDGASAAEIEAAPVPDTYLALHLRAEDADMFKGVADKDVRKSLRLGE-VPMPELAP 62

Query: 112 DQVLIKVVAAALNPVD----------------GKRRQGKFKATDSPLPTVPGYDVAGVVV 155
           D+VL+ V+A+++N                      RQG +         V G D +GVVV
Sbjct: 63  DEVLVAVMASSINYNTVWSAMFEPIPTFHFLKQNARQGGWATRHDQPYHVLGSDCSGVVV 122

Query: 156 KVGTQVKEFKEGDEVYG------------------DINEKALEGPKQFGSLAEYTAVEER 197
           + G  V+ +K GD V                       ++A      FG LAEY  V   
Sbjct: 123 RTGIGVRRWKPGDHVIVHPAHVDEQEPATHGDGMLGTEQRAWGFETNFGGLAEYGVVRAS 182

Query: 198 LLAPKPKNLDFVQAAGLPLAIETAYEGL---ERTGFSAGKSILVLNGSGGVGSLVIQLAK 254
            L PKP +L + +AA  PL   TAY  L          G  +L+   SGG+GS  IQ  K
Sbjct: 183 QLLPKPAHLTWEEAAVSPLCAGTAYRMLVSDRGAQMKQGDIVLIWGASGGLGSYAIQFVK 242

Query: 255 QVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFED---------------------- 292
              G   VA  SS +    +++LG DL I+  +    D                      
Sbjct: 243 -NGGGIPVAVVSSAQKEAAVRALGCDLVINRAELGITDDIADDPRRVVETGRKLAKLVVE 301

Query: 293 -LPEKFDVVYDAIGQ--CDRAVKAIKEGGTVV---ALTGAVTPPGFRFVVTS-------- 338
               + D+V++  G+     +V   + GGTVV   + +G +     R++           
Sbjct: 302 KAGREPDIVFEHTGRVTFGLSVIVARRGGTVVTCGSSSGYLHTFDNRYLWMKLKKIVGSH 361

Query: 339 --NGEVLKKLNPYLESGKVKPIIDPKGPFPFSQVVEAFSYIETNKATGKVVI 388
             N E  +  N   ESG V P +     +P ++  EA   ++T++  GKV +
Sbjct: 362 GANHEEQQATNRLFESGAVVPAMS--AVYPLAEAAEACRVVQTSRQVGKVAV 411

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli} Length = 353

 Score =  234 bits (599), Expect = 2e-74
 Identities = 94/343 (27%), Positives = 154/343 (44%), Gaps = 48/343 (13%)

Query: 79  TVPSEMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKAT 138
           ++P EM+      +GG DV+   +   +P   E +VL++  A  +N  D  +RQG +   
Sbjct: 24  SLPQEMRFVDLKSFGGPDVMVIGK-RPLPVAGEGEVLVRAEAIGVNRPDIAQRQGSYPP- 81

Query: 139 DSPLPTVPGYDVAGVVVKVGTQVKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERL 198
                 + G +++G +V VG  V  +  GD+V G        G    G+ AEY  +    
Sbjct: 82  PKDASPILGLELSGEIVGVGPGVSGYAVGDKVCG-----LANG----GAYAEYCLLPAGQ 132

Query: 199 LAPKPKNLDFVQAAGLPLAIETAYEGL-ERTGFSAGKSILVLNGSGGVGSLVIQLAKQVF 257
           + P PK  D V+AA LP    T +  L +  G + G+S+L+  G+ G+G+  IQLA+  F
Sbjct: 133 ILPFPKGYDAVKAAALPETFFTVWANLFQMAGLTEGESVLIHGGTSGIGTTAIQLARA-F 191

Query: 258 GASRVAATSSTRN-LEFLKSLGADLAIDYTKDNFEDL-----PEKFDVVYDAIGQ--CDR 309
           GA  V AT+ +    E  + LGA   I+Y  ++F  +      +  D++ D IG    +R
Sbjct: 192 GA-EVYATAGSTGKCEACERLGAKRGINYRSEDFAAVIKAETGQGVDIILDMIGAAYFER 250

Query: 310 AVKAIKEGGTVV--ALTGAVTPPGF--------RFVVTS--------------NGEVLKK 345
            + ++ + G +   A  G               R  VT                 ++L +
Sbjct: 251 NIASLAKDGCLSIIAFLGGAVAEKVNLSPIMVKRLTVTGSTMRPRTAEEKRAIRDDLLSE 310

Query: 346 LNPYLESGKVKPIIDPKGPFPFSQVVEAFSYIETNKATGKVVI 388
           + P LE+G V P+I     F F  V +A   +E     GKV++
Sbjct: 311 VWPLLEAGTVAPVIHKV--FAFEDVADAHRLLEEGSHVGKVML 351

>4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase; 2.10A {Homo sapiens} Length = 349

 Score =  230 bits (590), Expect = 4e-73
 Identities = 83/356 (23%), Positives = 136/356 (38%), Gaps = 64/356 (17%)

Query: 83  EMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPL 142
           EM+A +   +GG++ L+      +P+ ++ ++ I+V A  LN +D   RQG         
Sbjct: 3   EMRAVVLAGFGGLNKLRLFR-KAMPEPQDGELKIRVKACGLNFIDLMVRQGNIDNP-PKT 60

Query: 143 PTVPGYDVAGVVVKVGTQVKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPK 202
           P VPG++ +G+V  +G  VK ++ GD V       A      + + AE        +   
Sbjct: 61  PLVPGFECSGIVEALGDSVKGYEIGDRVM------AFVN---YNAWAEVVCTPVEFVYKI 111

Query: 203 PKNLDFVQAAGLPLAIETAYEGL-ERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASR 261
           P ++ F +AA  P+   TAY  L E      G S+LV +  GGVG  V QL         
Sbjct: 112 PDDMSFSEAAAFPMNFVTAYVMLFEVANLREGMSVLVHSAGGGVGQAVAQLCST-VPNVT 170

Query: 262 VAATSSTRNLEFLKSLGADLAIDYTKDNFEDLPEKF-----DVVYDAIGQ--CDRAVKAI 314
           V  T+ST   E +K     L  D   D +    ++      D+V D +      + +  +
Sbjct: 171 VFGTASTFKHEAIKDSVTHL-FDRNAD-YVQEVKRISAEGVDIVLDCLCGDNTGKGLSLL 228

Query: 315 KEGGTVV--ALTGAVTPPGFRFVVTSNG-------------------------------- 340
           K  GT +    +  VT     F   +                                  
Sbjct: 229 KPLGTYILYGSSNMVTGETKSFFSFAKSWWQVEKVNPIKLYEENKVIAGFSLLNLLFKQG 288

Query: 341 ------EVLKKLNPYLESGKVKPIIDPKGPFPFSQVVEAFSYIETNKATGKVVIHP 390
                  V++KL       K+KP++D    +   +V EA   I      GK+++  
Sbjct: 289 RAGLIRGVVEKLIGLYNQKKIKPVVDSL--WALEEVKEAMQRIHDRGNIGKLILDV 342

>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A Length = 456

 Score =  233 bits (596), Expect = 9e-73
 Identities = 87/423 (20%), Positives = 153/423 (36%), Gaps = 94/423 (22%)

Query: 56  LGVQASASQAAASSTEAEPTKVG--TVPSEMKAW-------------LYGEYGGVDVLKF 100
           + +       A  S ++ P  +    +P   +A                 +      +  
Sbjct: 1   MSLTVKDILDAIQSPDSTPADIAALPLPESYRAITVHKDETEMFAGLETRDKDPRKSIHL 60

Query: 101 DEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDS---------------PLP-T 144
           D+ V VP++   + L+ V+A+++N         +  +T                  LP  
Sbjct: 61  DD-VPVPELGPGEALVAVMASSVNYNSVHTSIFEPLSTFGFLERYGRVSDLAKRHDLPYH 119

Query: 145 VPGYDVAGVVVKVGTQVKEFKEGDEVYG------------------DINEKALEGPKQFG 186
           V G D+AGVV++ G  V  ++ GDEV                    D  ++       FG
Sbjct: 120 VIGSDLAGVVLRTGPGVNAWQAGDEVVAHCLSVELESSDGHNDTMLDPEQRIWGFETNFG 179

Query: 187 SLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGL---ERTGFSAGKSILVLNGSG 243
            LAE   V+   L PKP +L + +AA   L   TAY  L      G   G ++L+   SG
Sbjct: 180 GLAEIALVKSNQLMPKPDHLSWEEAAAPGLVNSTAYRQLVSRNGAGMKQGDNVLIWGASG 239

Query: 244 GVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFEDLP--------- 294
           G+GS   Q A    GA+ +   SS +  E  +++GA+  ID   + +             
Sbjct: 240 GLGSYATQFAL-AGGANPICVVSSPQKAEICRAMGAEAIIDRNAEGYRFWKDENTQDPKE 298

Query: 295 --------------EKFDVVYDAIGQC--DRAVKAIKEGGTVV---ALTGAVTPPGFRFV 335
                         E  D+V++  G+     +V   ++GGT+    + +G +     R++
Sbjct: 299 WKRFGKRIRELTGGEDIDIVFEHPGRETFGASVFVTRKGGTITTCASTSGYMHEYDNRYL 358

Query: 336 VTS----------NGEVLKKLNPYLESGKVKPIIDPKGPFPFSQVVEAFSYIETNKATGK 385
             S          N     + N  +  G++ P +     +      +A   +  N   GK
Sbjct: 359 WMSLKRIIGSHFANYREAWEANRLIAKGRIHPTLS--KVYSLEDTGQAAYDVHRNLHQGK 416

Query: 386 VVI 388
           V +
Sbjct: 417 VGV 419

>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A Length = 357

 Score =  228 bits (584), Expect = 4e-72
 Identities = 71/349 (20%), Positives = 126/349 (36%), Gaps = 54/349 (15%)

Query: 79  TVPSEMKAWLYGEYGG-VDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGK--F 135
           ++P+ ++A +YG +G    V++    + +  V+   V +K++AA +NP D    QG    
Sbjct: 22  SMPARVRALVYGHHGDPAKVVELKN-LELAAVRGSDVRVKMLAAPINPSDINMIQGNYGL 80

Query: 136 KATDSPLPTVPGYDVAGVVVKVGTQVKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVE 195
                 LP V G +    VV VG+ V   K GD V               G+        
Sbjct: 81  LP---ELPAVGGNEGVAQVVAVGSNVTGLKPGDWVIP--------ANAGLGTWRTEAVFS 129

Query: 196 ERLLAPKPKNLDFVQAAGLPLAIETAYEGL-ERTGFSAGKSILVLNGSGGVGSLVIQLAK 254
           E  L   P ++    AA L +   TAY  L +      G S++    + GVG  VIQ+A 
Sbjct: 130 EEALIQVPSDIPLQSAATLGVNPCTAYRMLMDFEQLQPGDSVIQNASNSGVGQAVIQIAA 189

Query: 255 QVFGASRVAATSSTRNLE----FLKSLGADLAIDYTKDNFEDLPEKF------DVVYDAI 304
              G   +       +++     LKSLGA+  I   +    ++   F       +  + +
Sbjct: 190 A-LGLRTINVVRDRPDIQKLSDRLKSLGAEHVITEEELRRPEMKNFFKDMPQPRLALNCV 248

Query: 305 G--QCDRAVKAIKEGGTVV---ALTGAVTPP-------------GF---RFVVTSNGEVL 343
           G       ++ +  GGT+V    +                    GF   ++    + +  
Sbjct: 249 GGKSSTELLRQLARGGTMVTYGGMAKQPVVASVSLLIFKDLKLRGFWLSQWKKDHSPDQF 308

Query: 344 KK----LNPYLESGKVKPIIDPKGPFPFSQVVEAFSYIETNKATGKVVI 388
           K+    L   +  G++      +   P      A         + K ++
Sbjct: 309 KELILTLCDLIRRGQLTAPACSQ--VPLQDYQSALEASMKPFISSKQIL 355

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A* Length = 354

 Score =  219 bits (560), Expect = 1e-68
 Identities = 93/348 (26%), Positives = 152/348 (43%), Gaps = 53/348 (15%)

Query: 79  TVPSEMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKAT 138
                M A  + + GG + L   E V  P   E +VL+KV A+ALN  D  +RQG++   
Sbjct: 18  LYFQSMLAVHFDKPGGPENLYVKE-VAKPSPGEGEVLLKVAASALNRADLMQRQGQYDP- 75

Query: 139 DSPLPTVPGYDVAGVVVKVGTQVK-EFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEER 197
                 + G + +G V ++G   +  +K GD          L G    G  A+Y  V E 
Sbjct: 76  PPGASNILGLEASGHVAELGPGCQGHWKIGDTAMA-----LLPG----GGQAQYVTVPEG 126

Query: 198 LLAPKPKNLDFVQAAGLPLAIETAYEGL-ERTGFSAGKSILVLNGSGGVGSLVIQLAKQV 256
           LL P P+ L   QAA +P A  TA++ L       AG  +L+  G  GVG+  IQL +  
Sbjct: 127 LLMPIPEGLTLTQAAAIPEAWLTAFQLLHLVGNVQAGDYVLIHAGLSGVGTAAIQLTRM- 185

Query: 257 FGASRVAATSSTRN-LEFLKSLGADLAIDYTKDNFEDLPEKF------DVVYDAIGQ--C 307
            GA     T+ ++  L+  + LGA    +Y K++F +   KF      +++ D IG    
Sbjct: 186 AGA-IPLVTAGSQKKLQMAEKLGAAAGFNYKKEDFSEATLKFTKGAGVNLILDCIGGSYW 244

Query: 308 DRAVKAIKEGGTVV--ALTGAVTPPGF--------RFVVTSNG--------------EVL 343
           ++ V  +   G  V   L G     G         R  + ++                  
Sbjct: 245 EKNVNCLALDGRWVLYGLMGGGDINGPLFSKLLFKRGSLITSLLRSRDNKYKQMLVNAFT 304

Query: 344 KKLNPYLES---GKVKPIIDPKGPFPFSQVVEAFSYIETNKATGKVVI 388
           +++ P+  +    ++ P++D    +P +++ EA  Y+E NK  GK+V+
Sbjct: 305 EQILPHFSTEGPQRLLPVLDRI--YPVTEIQEAHKYMEANKNIGKIVL 350

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} Length = 342

 Score =  217 bits (556), Expect = 3e-68
 Identities = 93/342 (27%), Positives = 135/342 (39%), Gaps = 50/342 (14%)

Query: 81  PSEMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGK--FKAT 138
           P  MKA       G + L + + V  P    + V++ V AA +   D    +G+   K  
Sbjct: 19  PGSMKAIQAQSLSGPEGLVYTD-VETPGAGPNVVVVDVKAAGVCFPDYLMTKGEYQLKM- 76

Query: 139 DSPLPTVPGYDVAGVVVKVGTQVKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERL 198
               P VPG + AGVV     +    K GD V               G  AE  AV    
Sbjct: 77  --EPPFVPGIETAGVVRSAP-EGSGIKPGDRVMAFNF---------IGGYAERVAVAPSN 124

Query: 199 LAPKPKNLDFVQAAGLPLAIETAYEGLERTG-FSAGKSILVLNGSGGVGSLVIQLAKQVF 257
           + P P  LD  +A  L     T Y    R G   AG+++LVL  +GG+G+  IQ+AK   
Sbjct: 125 ILPTPPQLDDAEAVALIANYHTMYFAYARRGQLRAGETVLVLGAAGGIGTAAIQIAKG-M 183

Query: 258 GASRVAATSSTRNLEFLKSLGADLAIDYTKDNFEDLPEK-----FDVVYDAIGQC--DRA 310
           GA  +A  + T   EF+KS+GAD+ +   +   + + E       D+V D IG    D A
Sbjct: 184 GAKVIAVVNRTAATEFVKSVGADIVLPLEEGWAKAVREATGGAGVDMVVDPIGGPAFDDA 243

Query: 311 VKAIKEGGT--VVALTGAVTPP--------------GF---RFVVT---SNGEVLKKLNP 348
           V+ +   G   VV       P               G     F+ T      E    L  
Sbjct: 244 VRTLASEGRLLVVGFAAGGIPTIKVNRLLLRNASLIGVAWGEFLRTHADYLYETQAGLEK 303

Query: 349 YLESGKVKPIIDPKGPFPFSQVVEAFSYIETNKATGKVVIHP 390
            +  G ++P +  +   P S+  +A       K  GK+V+ P
Sbjct: 304 LVAEG-MRPPVSAR--IPLSEGRQALQDFADGKVYGKMVLVP 342

>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti} Length = 349

 Score =  216 bits (552), Expect = 2e-67
 Identities = 72/357 (20%), Positives = 116/357 (32%), Gaps = 58/357 (16%)

Query: 79  TVPSEMKAWLYGEYGG------------VDVLKFDEKVTVPQVKEDQVLIKVVAAALNPV 126
           T+PSEMKA L    G                L+    + VP     QVLIKV  A++NP 
Sbjct: 6   TIPSEMKALLLVGDGYTKTPSGSALEAMEPYLEQGR-IAVPAPGPSQVLIKVNLASINPS 64

Query: 127 DGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVK-EFKEGDEVYGDINEKALEGPKQF 185
           D    +G++           G++  G +V  G +   +   G  V          G   +
Sbjct: 65  DVAFIKGQYGQP-RVKGRPAGFEGVGTIVAGGDEPYAKSLVGKRVA------FATGLSNW 117

Query: 186 GSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLERTGFSAGKSILVLNGSGGV 245
           GS AEY   E     P    +     A + +   TA    +       K+ ++  G+  +
Sbjct: 118 GSWAEYAVAEAAACIPLLDTVRDEDGAAMIVNPLTAIAMFDIVKQEGEKAFVMTAGASQL 177

Query: 246 GSLVIQLAKQVFGASRVAATSSTRN-LEFLKSLGADLAIDYTKDNFEDL------PEKFD 298
             L+I LAK+  G  R   T      +  LK +GA   ++    +FE         E+  
Sbjct: 178 CKLIIGLAKE-EGF-RPIVTVRRDEQIALLKDIGAAHVLNEKAPDFEATLREVMKAEQPR 235

Query: 299 VVYDAIG--QCDRAVKAIKEGGTVV---ALTGAVTPPGF-------RFVVT--------- 337
           +  DA+          A+ +    +    L    T              +          
Sbjct: 236 IFLDAVTGPLASAIFNAMPKRARWIIYGRLDPDATVIREPGQLIFQHKHIEGFWLSEWMR 295

Query: 338 ----SNGEVLKKLNPYLESGKVKPIIDPKGPFPFSQVVEAFSYIETNKATGKVVIHP 390
                 G  + +       G+    +      P ++ +      E  K  GKV I P
Sbjct: 296 QFKERRGPAILEAQKRFSDGRWSTDVT--AVVPLAEAIAWV-PAELTKPNGKVFIRP 349

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} Length = 340

 Score =  215 bits (551), Expect = 2e-67
 Identities = 68/341 (19%), Positives = 126/341 (36%), Gaps = 48/341 (14%)

Query: 84  MKAWLYGEYGG-VDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPL 142
            K   + ++G   DVL+ +    +  +K+++V ++++   +NP D     G +     PL
Sbjct: 5   GKLIQFHKFGNPKDVLQVEY-KNIEPLKDNEVFVRMLVRPINPSDLIPITGAYAHR-IPL 62

Query: 143 PTVPGYDVAGVVVKVGTQVKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPK 202
           P +PGY+  G+V  VG  V     G  V        L G    G+  EY       + P 
Sbjct: 63  PNIPGYEGVGIVENVGAFVSRELIGKRVL------PLRGE---GTWQEYVKTSADFVVPI 113

Query: 203 PKNLDFVQAAGLPLAIETAYEGLERTG-FSAGKSILVLNGSGGVGSLVIQLAKQVFGASR 261
           P ++D   AA + +   TA+     T        +LV      +G L  QL++       
Sbjct: 114 PDSIDDFTAAQMYINPLTAWVTCTETLNLQRNDVLLVNACGSAIGHLFAQLSQI-LNFRL 172

Query: 262 VAATSSTRNLEFLKSLGADLAIDYTKDNFEDL------PEKFDVVYDAIGQ--CDRAVKA 313
           +A T + ++ E L  LGA   ID +     +           D   D+IG    +    +
Sbjct: 173 IAVTRNNKHTEELLRLGAAYVIDTSTAPLYETVMELTNGIGADAAIDSIGGPDGNELAFS 232

Query: 314 IKEGGTVV---ALTGAVTPPGF-----RFVVT--------------SNGEVLKKLNPYLE 351
           ++  G  +    L+G            +                     E  + L   +E
Sbjct: 233 LRPNGHFLTIGLLSGIQVNWAEIVTKAKVHANIFHLRHWNDEVSPYKWQETFRHLIRLVE 292

Query: 352 SGKVKPI-IDPKGPFPFSQVVEAFSYIETN-KATGKVVIHP 390
           + +++ + +     +  + V  A   +++  K  GKV +  
Sbjct: 293 NEQLRFMKVHST--YELADVKAAVDVVQSAEKTKGKVFLTS 331

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D Length = 302

 Score =  194 bits (496), Expect = 1e-59
 Identities = 88/329 (26%), Positives = 135/329 (41%), Gaps = 53/329 (16%)

Query: 84  MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLP 143
           MKAW+    GG   L     +  P+ +E +V+++V A  LN  D   R G +       P
Sbjct: 1   MKAWVLKRLGGPLEL---VDLPEPEAEEGEVVLRVEAVGLNFADHLMRLGAYLTR-LHPP 56

Query: 144 TVPGYDVAGVVVKVGTQVKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKP 203
            +PG +V GVV            G          AL      G LAE  AV +  L P P
Sbjct: 57  FIPGMEVVGVVE-----------GRRYA------ALVP---QGGLAERVAVPKGALLPLP 96

Query: 204 KNLDFVQAAGLPLAIETAYEGLERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVA 263
           + L   +AA  P++  TAY  L+R     G+ +LV   +G +G+  +Q+A+   G  RV 
Sbjct: 97  EGLSPEEAAAFPVSFLTAYLALKRAQARPGEKVLVQAAAGALGTAAVQVARA-MGL-RVL 154

Query: 264 AT-SSTRNLEFLKSLGADLAIDYTKDNFEDLPEK-FDVVYDAIG-QCDRAVKAIKEGG-- 318
           A  S    L    +LGA+ A  Y +           D+V +  G + + ++  +  GG  
Sbjct: 155 AAASRPEKLALPLALGAEEAATYAEVPERAKAWGGLDLVLEVRGKEVEESLGLLAHGGRL 214

Query: 319 TVVALTGAVTPP--------------GF--RFVVT---SNGEVLKKLNPYLESGKVKPII 359
             +        P              GF    ++       E L  L P L   +++P++
Sbjct: 215 VYIGAAEGEVAPIPPLRLMRRNLAVLGFWLTPLLREGALVEEALGFLLPRLG-RELRPVV 273

Query: 360 DPKGPFPFSQVVEAFSYIETNKATGKVVI 388
            P   FPF++   AF  +     TGKVV+
Sbjct: 274 GPV--FPFAEAEAAFRALLDRGHTGKVVV 300

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* Length = 362

 Score =  195 bits (498), Expect = 3e-59
 Identities = 82/354 (23%), Positives = 129/354 (36%), Gaps = 58/354 (16%)

Query: 79  TVPSEMKAWLYGEYG--GVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFK 136
              S M+  +         + +       VP   +  +L++     +N  D     G++ 
Sbjct: 19  YFQSMMQKLVVTRLSPNFREAVTLSRDCPVPLPGDGDLLVRNRFVGVNASDINYSAGRYD 78

Query: 137 ATDSPLPTVPGYDVAGVVVKVGTQVKE-FKEGDEVYGDINEKALEGPKQFGSLAEYTAVE 195
            +    P   G++  G VV +G      +  G  V       A       GS AEYT V 
Sbjct: 79  PS-VKPPFDIGFEGIGEVVALGLSASARYTVGQAV-------AYMA---PGSFAEYTVVP 127

Query: 196 ERLLAPKPKNLDFVQAAGLPLAIETAYEGLERTG-FSAGKSILVLNGSGGVGSLVIQLAK 254
             +  P P      +   L ++  TAY  L+  G  S GK +LV   +GG G   +QL+K
Sbjct: 128 ASIATPVPSVKP--EYLTLLVSGTTAYISLKELGGLSEGKKVLVTAAAGGTGQFAMQLSK 185

Query: 255 QVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFEDL-----PEKFDVVYDAIG--QC 307
           +      +   SS     FLKSLG D  I+Y  +    +     PE  DVVY+++G    
Sbjct: 186 K-AKCHVIGTCSSDEKSAFLKSLGCDRPINYKTEPVGTVLKQEYPEGVDVVYESVGGAMF 244

Query: 308 DRAVKAIKEGGTVV---ALTGAVTPPGFR--------------------FVVTS----NG 340
           D AV A+   G ++    ++G  TP G                      F +        
Sbjct: 245 DLAVDALATKGRLIVIGFISGYQTPTGLSPVKAGTLPAKLLKKSASVQGFFLNHYLSKYQ 304

Query: 341 EVLKKLNPYLESGKVKPIIDPKGP------FPFSQVVEAFSYIETNKATGKVVI 388
             +  L     SG +   +D               +  A +Y+   K TGK+V+
Sbjct: 305 AAMSHLLEMCVSGDLVCEVDLGDLSPEGRFTGLESIFRAVNYMYMGKNTGKIVV 358

>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A Length = 364

 Score =  193 bits (493), Expect = 1e-58
 Identities = 62/370 (16%), Positives = 115/370 (31%), Gaps = 76/370 (20%)

Query: 84  MKAWLYGEYGG-VDVLKFDEK-VTVPQVKEDQVLIKVVAAALNPVDGKRRQGK------- 134
            +A LY ++G   DVL      +    +  ++V++K + + +NP D  + QG        
Sbjct: 4   AQAVLYTQHGEPKDVLFTQSFEIDDDNLAPNEVIVKTLGSPVNPSDINQIQGVYPSKPAK 63

Query: 135 -FKATDSPLPTVPGYDVAGVVVKVGTQVKEFKEGDEVYGDINEKALEGPKQFGSLAEYTA 193
                 +      G +    V+KVG+ V   + GD V              FG+   +  
Sbjct: 64  TTGFGTTEPAAPCGNEGLFEVIKVGSNVSSLEAGDWVIP--------SHVNFGTWRTHAL 115

Query: 194 VEERLLAP-----------KPKNLDFVQAAGLPLAIETAYEGL-ERTGFSAGKSILVLNG 241
             +                KP  L   Q A + +   TAY  L      + GK   + NG
Sbjct: 116 GNDDDFIKLPNPAQSKANGKPNGLTINQGATISVNPLTAYLMLTHYVKLTPGKDWFIQNG 175

Query: 242 -SGGVGSLVIQLAKQVFGASRVAATSSTRN----LEFLKSLGADLAIDYTKDNFEDLPEK 296
            +  VG    Q+ K     + ++      N    +  LK LGA   I   ++N  +    
Sbjct: 176 GTSAVGKYASQIGKL-LNFNSISVIRDRPNLDEVVASLKELGATQVITEDQNNSREFGPT 234

Query: 297 F-----------DVVYDAIG--QCDRAVKAIKEGGTVV---ALTGAVTPP---------- 330
                        +  + +G        + +   G ++    ++                
Sbjct: 235 IKEWIKQSGGEAKLALNCVGGKSSTGIARKLNNNGLMLTYGGMSFQPVTIPTSLYIFKNF 294

Query: 331 ---GF---RFVVTS---NGEVLKKLNPYLESGKVKPIIDPKGPFPFSQVVEAFSYIE--- 378
              GF     +  +       L ++  + E GK+      +    +          +   
Sbjct: 295 TSAGFWVTELLKNNKELKTSTLNQIIAWYEEGKLTDAKSIE--TLYDGTKPLHELYQDGV 352

Query: 379 TNKATGKVVI 388
            N   GK +I
Sbjct: 353 ANSKDGKQLI 362

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 Length = 327

 Score =  184 bits (470), Expect = 2e-55
 Identities = 80/339 (23%), Positives = 138/339 (40%), Gaps = 45/339 (13%)

Query: 84  MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLP 143
                + ++GG +VL+  E  T     E+++ ++  A  +N +D   R G +      LP
Sbjct: 2   ATRIEFHKHGGPEVLQAVE-FTPADPAENEIQVENKAIGINFIDTYIRSGLYPP--PSLP 58

Query: 144 TVPGYDVAGVVVKVGTQVKEFKEGDEV-YGDINEKALEGPKQFGSLAEYTAVEERLLAPK 202
           +  G + AG+V KVG+ VK  K GD V Y              G+ +    +     A  
Sbjct: 59  SGLGTEAAGIVSKVGSGVKHIKAGDRVVYAQSA---------LGAYSSVHNIIADKAAIL 109

Query: 203 PKNLDFVQAAGLPLAIETAYEGLERTG-FSAGKSILVLNGSGGVGSLVIQLAKQVFGASR 261
           P  + F QAA   L   T Y  L +T      +  L    +GGVG +  Q AK + GA  
Sbjct: 110 PAAISFEQAAASFLKGLTVYYLLRKTYEIKPDEQFLFHAAAGGVGLIACQWAKAL-GAKL 168

Query: 262 VAATSSTRNLEFLKSLGADLAIDYTKDNFEDL------PEKFDVVYDAIGQ--CDRAVKA 313
           +    + +  +     GA   I+Y +++  +        +K  VVYD++G+   +R++  
Sbjct: 169 IGTVGTAQKAQSALKAGAWQVINYREEDLVERLKEITGGKKVRVVYDSVGRDTWERSLDC 228

Query: 314 IKEGGTVV---ALTGAVTP--------PGFRFVV-------TSNGEVL----KKLNPYLE 351
           ++  G +V     +GAVT          G  +V         +  E L     +L   + 
Sbjct: 229 LQRRGLMVSFGNSSGAVTGVNLGILNQKGSLYVTRPSLQGYITTREELTEASNELFSLIA 288

Query: 352 SGKVKPIIDPKGPFPFSQVVEAFSYIETNKATGKVVIHP 390
           SG +K  +  +  +P      A   +E+    G  ++ P
Sbjct: 289 SGVIKVDVAEQQKYPLKDAQRAHEILESRATQGSSLLIP 327

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* Length = 325

 Score =  183 bits (468), Expect = 3e-55
 Identities = 91/339 (26%), Positives = 137/339 (40%), Gaps = 47/339 (13%)

Query: 84  MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLP 143
            K   +   GG +VL++ +           V+++  A  LN +D   R G + A    LP
Sbjct: 2   AKRIQFSTVGGPEVLEYVD-FEPEAPGPQAVVVRNKAIGLNFIDTYYRSGLYPA--PFLP 58

Query: 144 TVPGYDVAGVVVKVGTQVKEFKEGDEV-YGDINEKALEGPKQFGSLAEYTAVEERLLAPK 202
           +  G + AGVV  VG +V  FK GD V YG             G+ +E   + E  L   
Sbjct: 59  SGLGAEGAGVVEAVGDEVTRFKVGDRVAYGTGP---------LGAYSEVHVLPEANLVKL 109

Query: 203 PKNLDFVQAAGLPLAIETAYEGLERTG-FSAGKSILVLNGSGGVGSLVIQLAKQVFGASR 261
             ++ F QAA L L   T    L +T     G+ IL    +GGVGSL  Q AK + GA  
Sbjct: 110 ADSVSFEQAAALMLKGLTVQYLLRQTYQVKPGEIILFHAAAGGVGSLACQWAKAL-GAKL 168

Query: 262 VAATSSTRNLEFLKSLGADLAIDYTKDNFEDL------PEKFDVVYDAIGQ--CDRAVKA 313
           +   SS       K+LGA   IDY+ ++           +K  VVYD +GQ     ++ +
Sbjct: 169 IGTVSSPEKAAHAKALGAWETIDYSHEDVAKRVLELTDGKKCPVVYDGVGQDTWLTSLDS 228

Query: 314 IKEGGTVV---ALTGAVTP--------PGFRFVV-------TSNGEVL----KKLNPYLE 351
           +   G VV     +G V+             +V         +N + L     +L   L 
Sbjct: 229 VAPRGLVVSFGNASGPVSGVNLGILAQKDSVYVTRPTLGSYANNAQNLQTMADELFDMLA 288

Query: 352 SGKVKPIIDPKGPFPFSQVVEAFSYIETNKATGKVVIHP 390
           SGK+K        +      +A   +   + TG  ++ P
Sbjct: 289 SGKLKVDGI--EQYALKDAAKAQIELSARRTTGSTILIP 325

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* Length = 334

 Score =  183 bits (468), Expect = 4e-55
 Identities = 84/348 (24%), Positives = 146/348 (41%), Gaps = 52/348 (14%)

Query: 79  TVPSEMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKAT 138
           T+P + K  L  E GG DV+K+++   VP + E+++LIK     +N ++   R+G +   
Sbjct: 4   TIPEQQKVILIDEIGGYDVIKYED-YPVPSISEEELLIKNKYTGVNYIESYFRKGIYPC- 61

Query: 139 DSPLPTVPGYDVAGVVVKVGTQVKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAV-EER 197
               P V G + +G VV  G  V  F+ GD+V       A        + A+Y+ +  + 
Sbjct: 62  --EKPYVLGREASGTVVAKGKGVTNFEVGDQV-------AYISN---STFAQYSKISSQG 109

Query: 198 LLAPKPKNLDFVQ---AAGLPLAIETAYEGLERTG-FSAGKSILVLNGSGGVGSLVIQLA 253
            +   PK     +    A   L + TA            G  +L+   +GGVG ++ QL 
Sbjct: 110 PVMKLPKGTSDEELKLYAAGLLQVLTALSFTNEAYHVKKGDYVLLFAAAGGVGLILNQLL 169

Query: 254 KQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFEDL------PEKFDVVYDAIGQ- 306
           K   GA  +A  S+   L+  K  GA+  I+ +K++           +  D  +D++G+ 
Sbjct: 170 KMK-GAHTIAVASTDEKLKIAKEYGAEYLINASKEDILRQVLKFTNGKGVDASFDSVGKD 228

Query: 307 -CDRAVKAIKEGGTVV---ALTGAVTP-------PGFRFVV-------TSNGEVL----K 344
             + ++ A+K  G  V     +G + P       P    +V        ++ E       
Sbjct: 229 TFEISLAALKRKGVFVSFGNASGLIPPFSITRLSPKNITLVRPQLYGYIADPEEWKYYSD 288

Query: 345 KLNPYLESGKVKPIIDPKGPFPFSQVVEAFSYIETNKATGKVVIHPIP 392
           +    + S K+   I     +P      A + IE+ K  GK+V+  IP
Sbjct: 289 EFFGLVNSKKLNIKIYKT--YPLRDYRTAAADIESRKTVGKLVLE-IP 333

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP} Length = 333

 Score =  180 bits (459), Expect = 7e-54
 Identities = 77/343 (22%), Positives = 137/343 (39%), Gaps = 49/343 (14%)

Query: 84  MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFK-ATDSPL 142
           + A +  + GG D   ++E V V      QV ++  A  +N +D   R G          
Sbjct: 2   VMAAVIHKKGGPDNFVWEE-VKVGSPGPGQVRLRNTAIGVNFLDTYHRAGIPHPLVVGEP 60

Query: 143 PTVPGYDVAGVVVKVGTQVKEFKEGDEV-YGDINEKALEGPKQFGSLAEYTAVEERLLAP 201
           P V G++ A VV +VG  V +F  G+ V                G+ ++        L  
Sbjct: 61  PIVVGFEAAAVVEEVGPGVTDFTVGERVCTCLPP---------LGAYSQERLYPAEKLIK 111

Query: 202 KPKNLDFVQA--AGLPLAIETAYEGLERTG-FSAGKSILVLNGSGGVGSLVIQLAKQVFG 258
            PK+LD      AGL L   TA   L +T     G  +L+   +GG+G +++  A+ + G
Sbjct: 112 VPKDLDLDDVHLAGLMLKGMTAQYLLHQTHKVKPGDYVLIHAAAGGMGHIMVPWARHL-G 170

Query: 259 ASRVAATSSTRNLEFLKSLGADLAIDYTKDNFEDL------PEKFDVVYDAIGQ--CDRA 310
           A+ +   S+    E  + LG    I+Y+  +F ++       +  DVVYD+IG+    ++
Sbjct: 171 ATVIGTVSTEEKAETARKLGCHHTINYSTQDFAEVVREITGGKGVDVVYDSIGKDTLQKS 230

Query: 311 VKAIKEGGTVV---ALTGAVTP-----------------PGFRFVVTSNGEVL---KKLN 347
           +  ++  G        +G   P                 P     +++  E+    K L 
Sbjct: 231 LDCLRPRGMCAAYGHASGVADPIRVVEDLGVRGSLFITRPALWHYMSNRSEIDEGSKCLF 290

Query: 348 PYLESGKVKPIIDPKGPFPFSQVVEAFSYIETNKATGKVVIHP 390
             +++G +   +     FP  +   A  Y+   +  G +V+ P
Sbjct: 291 DAVKAGVLHSSVAKT--FPLREAAAAHKYMGGRQTIGSIVLLP 331

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A* Length = 347

 Score =  173 bits (440), Expect = 7e-51
 Identities = 88/359 (24%), Positives = 142/359 (39%), Gaps = 64/359 (17%)

Query: 84  MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDS--- 140
           M+A    E G    L   +++ VP+ K  QVLIKV AA +   D   RQG+F        
Sbjct: 1   MRAVRLVEIGKPLSL---QEIGVPKPKGPQVLIKVEAAGVCHSDVHMRQGRFGNLRIVED 57

Query: 141 ---PLPTVPGYDVAGVVVKVGTQVKEFKEGDEV---------------YGDIN---EKAL 179
               LP   G+++AG + +VG +V  + +GD V                G+ +       
Sbjct: 58  LGVKLPVTLGHEIAGKIEEVGDEVVGYSKGDLVAVNPWQGEGNCYYCRIGEEHLCDSPRW 117

Query: 180 EGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLERTGFSAGKSILVL 239
            G    G+ AEY  V       K + L+ V+AA L  +  T Y  + +      K++LV+
Sbjct: 118 LGINFDGAYAEYVIVPHYKYMYKLRRLNAVEAAPLTCSGITTYRAVRKASLDPTKTLLVV 177

Query: 240 NGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFEDLPEK--- 296
              GG+G++ +Q+AK V GA+ +        +E  K  GAD  I+ +    +D   +   
Sbjct: 178 GAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGADYVINASM---QDPLAEIRR 234

Query: 297 ------FDVVYDAIGQ---CDRAVKAIKEGGTVVAL---TGAVTPPGFRFVVTSN----- 339
                  D V D            KA+ + G  V +      +        ++       
Sbjct: 235 ITESKGVDAVIDLNNSEKTLSVYPKALAKQGKYVMVGLFGADLHYHAPLITLSEIQFVGS 294

Query: 340 --------GEVLKKLNPYLESGKVKPIIDPKGPFPFSQVVEAFSYIETNKATGKVVIHP 390
                     +++      E+GKVKP+I         +  EA   +E  KA G+ V+ P
Sbjct: 295 LVGNQSDFLGIMR----LAEAGKVKPMITKT--MKLEEANEAIDNLENFKAIGRQVLIP 347

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* Length = 370

 Score =  159 bits (405), Expect = 1e-45
 Identities = 87/375 (23%), Positives = 147/375 (39%), Gaps = 68/375 (18%)

Query: 66  AASSTEAEPTKVGTVPSEMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNP 125
             SS     T+     S MKA      G + V      V +P+   D +L+KV A  +  
Sbjct: 6   HHSSGVDLGTENLYFQSMMKAVRLESVGNISV----RNVGIPEPGPDDLLVKVEACGICG 61

Query: 126 VDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKEFKEGDEVYGDI----------- 174
            D     G+F +T    P   G++  G+VV+ G+ V++   G  + GD            
Sbjct: 62  TDRHLLHGEFPST---PPVTLGHEFCGIVVEAGSAVRDIAPGARITGDPNISCGRCPQCQ 118

Query: 175 --------NEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGL-PLAIETAYEGL 225
                   N +A+ G  + G  AEY  V  +     P  LD V  A   PLA      G+
Sbjct: 119 AGRVNLCRNLRAI-GIHRDGGFAEYVLVPRKQAFEIPLTLDPVHGAFCEPLAC--CLHGV 175

Query: 226 ERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAAT--SSTRNLEFLKSLGADLAI 283
           + +G  AG ++ +L G G +G L +QLA+ + GA+ V  +   +T+     + +GA   +
Sbjct: 176 DLSGIKAGSTVAIL-GGGVIGLLTVQLAR-LAGATTVILSTRQATK-RRLAEEVGATATV 232

Query: 284 DYTKDNFED--------LPEKFDVVYDAIGQ---CDRAVKAIKEGGTVVALTGAVTPPGF 332
           D +  +  +        +P   DVV +  G      ++ +  K GGTVV L   V P G 
Sbjct: 233 DPSAGDVVEAIAGPVGLVPGGVDVVIECAGVAETVKQSTRLAKAGGTVVIL--GVLPQGE 290

Query: 333 RFVVTSNGEVLKKLN---------------PYLESGK--VKPIIDPKGPFPFSQVVEAFS 375
           +  +     + ++L                  + +G   +  +I  +      +  +  S
Sbjct: 291 KVEIEPFDILFRELRVLGSFINPFVHRRAADLVATGAIEIDRMISRR--ISLDEAPDVIS 348

Query: 376 YIETNKATGKVVIHP 390
                    KV++ P
Sbjct: 349 NPA-AAGEVKVLVIP 362

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli} Length = 346

 Score =  146 bits (371), Expect = 8e-41
 Identities = 67/364 (18%), Positives = 130/364 (35%), Gaps = 75/364 (20%)

Query: 84  MKA-WLYGEYGGVDVLKFDEKVTVPQVK-EDQVLIKVVAAALNPVDGKRRQGKFKATDSP 141
           MK+           +++  E   +P++K +D+V +K+ ++ L   D  R           
Sbjct: 1   MKSVVNDT----DGIVRVAE-SVIPEIKHQDEVRVKIASSGLCGSDLPRIFKNGAH---Y 52

Query: 142 LPTVPGYDVAGVVVKVGTQVKEFKEGDEVYGD-------------------INEKALEGP 182
            P   G++ +G +  VG+ V +   GD V                           + G 
Sbjct: 53  YPITLGHEFSGYIDAVGSGVDDLHPGDAVACVPLLPCFTCPECLKGFYSQCAKYDFI-GS 111

Query: 183 KQFGSLAEYTAVEERLLAPKPKNLDFVQAAGL-PLAIETAYEGLERTGFSAGKSILVLNG 241
           ++ G  AEY  V+ + +   P ++     A + P+ +               K+++++ G
Sbjct: 112 RRDGGFAEYIVVKRKNVFALPTDMPIEDGAFIEPITV--GLHAFHLAQGCENKNVIII-G 168

Query: 242 SGGVGSLVIQLAKQVFGASRVAAT--SSTRNLEFLKSLGADLAIDYTKDNFEDLPEK--- 296
           +G +G L IQ A    GA  V A   SS + L   KS GA    + ++ +   +      
Sbjct: 169 AGTIGLLAIQCAV-ALGAKSVTAIDISSEK-LALAKSFGAMQTFNSSEMSAPQMQSVLRE 226

Query: 297 ---FDVVYDAIGQ---CDRAVKAIKEGGTVVALTGAVTPPGFRFVVTSNGEVLKK----- 345
                ++ +  G     + AV+       +  +              + G++L+K     
Sbjct: 227 LRFNQLILETAGVPQTVELAVEIAGPHAQLALV--GTLHQDLHLTSATFGKILRKELTVI 284

Query: 346 ------LNPY-----------LESGK--VKPIIDPKGPFPFSQVVEAFSYIETNKATGKV 386
                  +P+           L   K  ++P+I  +    F    +A   I  N   GKV
Sbjct: 285 GSWMNYSSPWPGQEWETASRLLTERKLSLEPLIAHR--GSFESFAQAVRDIARNAMPGKV 342

Query: 387 VIHP 390
           ++ P
Sbjct: 343 LLIP 346

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A* Length = 345

 Score =  142 bits (361), Expect = 2e-39
 Identities = 77/352 (21%), Positives = 121/352 (34%), Gaps = 52/352 (14%)

Query: 84  MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLP 143
           MKA  Y E G   V+     +  P     ++L+KV AA L   D              LP
Sbjct: 1   MKAVQYTEIGSEPVV---VDIPTPTPGPGEILLKVTAAGLCHSDIFVMDMPAAQYAYGLP 57

Query: 144 TVPGYDVAGVVVKVGTQVKEFKEGDEV-----------------------YGDINEKALE 180
              G++  G V ++G  V  F  GD V                                 
Sbjct: 58  LTLGHEGVGTVAELGEGVTGFGVGDAVAVYGPWGCGACHACARGRENYCTRAADLGITPP 117

Query: 181 GPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLERT--GFSAGKSILV 238
           G    GS+AEY  V+         +LD V AA L  A  T Y  + R       G + +V
Sbjct: 118 GLGSPGSMAEYMIVDSARHLVPIGDLDPVAAAPLTDAGLTPYHAISRVLPLLGPGSTAVV 177

Query: 239 LNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFEDLPEK-- 296
           + G GG+G + IQ+ + V  A  +A       L   + +GAD A+       + + E   
Sbjct: 178 I-GVGGLGHVGIQILRAVSAARVIAVDLDDDRLALAREVGADAAVKSGAGAADAIRELTG 236

Query: 297 ---FDVVYDAIGQ---CDRAVKAIKEGGTVVAL---TGAVTPPGFRFVVTS--------- 338
                 V+D +G     D A + +   G +  +    GA    GF  +            
Sbjct: 237 GQGATAVFDFVGAQSTIDTAQQVVAVDGHISVVGIHAGAHAKVGFFMIPFGASVVTPYWG 296

Query: 339 NGEVLKKLNPYLESGKVKPIIDPKGPFPFSQVVEAFSYIETNKATGKVVIHP 390
               L ++     +G++    +    F   +   A+  +      G+ V+ P
Sbjct: 297 TRSELMEVVALARAGRLDIHTE---TFTLDEGPAAYRRLREGSIRGRGVVVP 345

>3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE NDP; 1.70A {Ralstonia eutropha} Length = 379

 Score =  142 bits (359), Expect = 6e-39
 Identities = 54/377 (14%), Positives = 100/377 (26%), Gaps = 89/377 (23%)

Query: 89  YGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQG--------------- 133
             +  G   L  D  +  P    D+VLI++ A+ LNP D     G               
Sbjct: 11  RIKSSGELELSLDS-IDTPHPGPDEVLIRIEASPLNPSDLGLLFGAADMSTAKASGTAER 69

Query: 134 ------------KFKATDSPLPTVPGYDVAGVVVKVGTQVKEFKEGDEVYGDINEKALEG 181
                       +  A         G + AGVVV+ G+         +        A  G
Sbjct: 70  PIVTARVPEGAMRSMAGRLDASMPVGNEGAGVVVEAGSSPAAQALMGKTV------AAIG 123

Query: 182 PKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLERTGFSAGKSILVLNG 241
                  ++Y  +        P+       A   +   TA   +E        +++    
Sbjct: 124 G---AMYSQYRCIPADQCLVLPEGATPADGASSFVNPLTALGMVETMRLEGHSALVHTAA 180

Query: 242 SGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFEDL------PE 295
           +  +G ++ Q+  +  G   V         + LK+ GA    +     F           
Sbjct: 181 ASNLGQMLNQICLK-DGIKLVNIVRKQEQADLLKAQGAVHVCNAASPTFMQDLTEALVST 239

Query: 296 KFDVVYDAIG------QCDRAVKA-------------IKEGGTVV---ALTGAVTP--PG 331
              + +DA G      Q    ++A                   V     L  + T     
Sbjct: 240 GATIAFDATGGGKLGGQILTCMEAALNKSAREYSRYGSTTHKQVYLYGGLDTSPTEFNRN 299

Query: 332 FRFVVTSNG----------------EVLKKLNPYLESGKVKPIIDPKGPFPFSQVV--EA 373
           F       G                 + +++   L           +     ++V+  + 
Sbjct: 300 FGMAWGMGGWLLFPFLQKIGRERANALKQRVVAEL-KTTFASHYSKE--ISLAEVLDLDM 356

Query: 374 FSYIETNKATGKVVIHP 390
            +         K +I+P
Sbjct: 357 IAVYNKRATGEKYLINP 373

>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1 Length = 359

 Score =  141 bits (357), Expect = 1e-38
 Identities = 71/364 (19%), Positives = 133/364 (36%), Gaps = 67/364 (18%)

Query: 79  TVPSEMKAWLYGEYGGVDVLKFDEKVTVPQVK-EDQVLIKVVAAA-----LNPVDGKRRQ 132
                +KA    EY     +   E V  P+++    V++++  A      L+ V G   +
Sbjct: 11  LGVERLKAARLHEYNKPLRI---EDVDYPRLEGRFDVIVRIAGAGVCHTDLHLVQGMWHE 67

Query: 133 GKFKATDSPLPTVPGYDVAGVVVKVGTQVKEFKEGDEV---------------YGDIN-- 175
                    LP   G++  G + +V   V+  ++GD V                G+    
Sbjct: 68  L----LQPKLPYTLGHENVGYIEEVAEGVEGLEKGDPVILHPAVTDGTCLACRAGEDMHC 123

Query: 176 -EKALEGPKQFGSLAEYTAVEERLLAPKPKNLDF---VQAAGLPLAIETAYEGLERTGFS 231
                 G    G  AE+     R +   PK++     V+ A L  A  TAY  +++   +
Sbjct: 124 ENLEFPGLNIDGGFAEFMRTSHRSVIKLPKDISREKLVEMAPLADAGITAYRAVKKAART 183

Query: 232 --AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDN 289
              G  + ++ G GG+G + +QL K +  A+ +A       L+  + LGAD  +D  +D 
Sbjct: 184 LYPGAYVAIV-GVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERLGADHVVDARRDP 242

Query: 290 FEDLPEK-----FDVVYDAIGQ---CDRAVKAIKEGGTVVA--LTGAVTPPGFRFVVTSN 339
            + + E       +V  D +G     D     +   G ++     G +  P  R + +  
Sbjct: 243 VKQVMELTRGRGVNVAMDFVGSQATVDYTPYLLGRMGRLIIVGYGGELRFPTIRVISSEV 302

Query: 340 -------------GEVLKKLNPYLESGKVKPIIDPKGPFPFSQVVEAFSYIETNKATGKV 386
                         E++         GKV+  +D        ++ +    +E  +  G+ 
Sbjct: 303 SFEGSLVGNYVELHELVT----LALQGKVRVEVD---IHKLDEINDVLERLEKGEVLGRA 355

Query: 387 VIHP 390
           V+ P
Sbjct: 356 VLIP 359

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus} Length = 344

 Score =  139 bits (352), Expect = 4e-38
 Identities = 78/353 (22%), Positives = 143/353 (40%), Gaps = 58/353 (16%)

Query: 84  MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLP 143
            KA L  ++     +   E V +P+ + ++VLI++  A +   D +  +G        LP
Sbjct: 4   SKAALLKKFSEPLSI---EDVNIPEPQGEEVLIRIGGAGVCRTDLRVWKGVEAKQGFRLP 60

Query: 144 TVPGYDVAGVVVKVGTQVKEFKEGDEV---------------YGDIN---EKALEGPKQF 185
            + G++ AG +V+VG ++ + K+GD V                G  N    + + G    
Sbjct: 61  IILGHENAGTIVEVG-ELAKVKKGDNVVVYATWGDLTCRYCREGKFNICKNQIIPGQTTN 119

Query: 186 GSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLERTGFSAGK---SILVLNGS 242
           G  +EY  V+      K  +L  V+AA L  A  T+   + +      K    ++++NG 
Sbjct: 120 GGFSEYMLVKSSRWLVKLNSLSPVEAAPLADAGTTSMGAIRQALPFISKFAEPVVIVNGI 179

Query: 243 GGVGSLVIQLAKQVFGASRVAATS-STRNLEFLKSLGADLAIDYTKDNFEDLPEK----- 296
           GG+    IQ+ K +     +   S S ++ +F   LGAD   +  KD    + +      
Sbjct: 180 GGLAVYTIQILKALMKNITIVGISRSKKHRDFALELGADYVSE-MKDAESLINKLTDGLG 238

Query: 297 FDVVYDAIGQ---CDRAVKAIKEGGTVVAL---TGAVTPPGFRFVVTSN----------- 339
             +  D +G         K + + G ++ +      V+   F   V +            
Sbjct: 239 ASIAIDLVGTEETTYNLGKLLAQEGAIILVGMEGKRVSLEAFDTAVWNKKLLGSNYGSLN 298

Query: 340 --GEVLKKLNPYLESGKVKPIIDPKGPFPFSQVVEAFSYIETNKATGKVVIHP 390
              +V++      ESGK+KP I      P   + +AF+ ++  +  G+ VI P
Sbjct: 299 DLEDVVR----LSESGKIKPYII---KVPLDDINKAFTNLDEGRVDGRQVITP 344

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A Length = 356

 Score =  133 bits (338), Expect = 5e-36
 Identities = 83/374 (22%), Positives = 143/374 (38%), Gaps = 85/374 (22%)

Query: 79  TVPSEMKA-WLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAAL------NPVDGKRR 131
                  +  ++G       L+ +    +P+   ++VL+++ +  +          G  R
Sbjct: 3   AAKPNNLSLVVHG----PGDLRLEN-YPIPEPGPNEVLLRMHSVGICGSDVHYWEYG--R 55

Query: 132 QGKFKATDSPLPTVPGYDVAGVVVKVGTQVKEFKEGDEVYGDINEKALEG---------- 181
            G F       P V G++ +G V KVG+ VK  K GD V       A+E           
Sbjct: 56  IGNFIVKK---PMVLGHEASGTVEKVGSSVKHLKPGDRV-------AIEPGAPRENDEFC 105

Query: 182 ----------------PKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGL-PLAIETAYEG 224
                           P   G+L  +           P N+ F + A + PL++      
Sbjct: 106 KMGRYNLSPSIFFCATPPDDGNLCRFYKHNAAFCYKLPDNVTFEEGALIEPLSV--GIHA 163

Query: 225 LERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAAT--SSTRNLEFLKSLGADLA 282
             R G + G  +LV  G+G +G + + +AK   GA++V  T  S+TR L   K +GADL 
Sbjct: 164 CRRGGVTLGHKVLVC-GAGPIGMVTLLVAK-AMGAAQVVVTDLSATR-LSKAKEIGADLV 220

Query: 283 IDYTKDNFED--------LPEKFDVVYDAIG--QC-DRAVKAIKEGGTVVALTGAVTPPG 331
           +  +K++ ++        L  K +V  +  G        + A + GGT+V +        
Sbjct: 221 LQISKESPQEIARKVEGQLGCKPEVTIECTGAEASIQAGIYATRSGGTLVLVGLGSEMTT 280

Query: 332 FRFVVTSNGEVLKK-----LNPY------LESGK--VKPIIDPKGPFPFSQVVEAFSYIE 378
              +  +  EV  K      N +      L S    VKP++     FP  + +EAF   +
Sbjct: 281 VPLLHAAIREVDIKGVFRYCNTWPVAISMLASKSVNVKPLVT--HRFPLEKALEAFETFK 338

Query: 379 TNKATGKVVIHPIP 392
                 K+++   P
Sbjct: 339 KGLG-LKIMLKCDP 351

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A* Length = 343

 Score =  130 bits (328), Expect = 1e-34
 Identities = 70/355 (19%), Positives = 133/355 (37%), Gaps = 62/355 (17%)

Query: 84  MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKR-RQGKFKATDSPL 142
           M+A         + L   +   VP+    ++L++V AA++   D    +   +       
Sbjct: 1   MRALAK--LAPEEGLTLVD-RPVPEPGPGEILVRVEAASICGTDLHIWKWDAWARGRIRP 57

Query: 143 PTVPGYDVAGVVVKVGTQVKEFKEGDEVYGD-------------------INEKALEGPK 183
           P V G++ +GVV  VG  V+  + GD V  +                   +N + L   +
Sbjct: 58  PLVTGHEFSGVVEAVGPGVRRPQVGDHVSLESHIVCHACPACRTGNYHVCLNTQILGVDR 117

Query: 184 QFGSLAEYTAVEERLLAPKPKNLDFVQAAGL-PLAIETAYEGLERTGFSAGKSILVLNGS 242
             G  AEY  V        PK+L F  AA L P     A   +      +GKS+L+  G+
Sbjct: 118 D-GGFAEYVVVPAENAWVNPKDLPFEVAAILEPFGN--AVHTVYAGSGVSGKSVLIT-GA 173

Query: 243 GGVGSLVIQLAKQVFGASRVAAT--SSTRNLEFLKSLGADLAIDYTKDNFED-----LPE 295
           G +G +   + +   GA  +  +  +  R L F +       ++  +++  +        
Sbjct: 174 GPIGLMAAMVVR-ASGAGPILVSDPNPYR-LAFARPYADR-LVNPLEEDLLEVVRRVTGS 230

Query: 296 KFDVVYDAIGQ---CDRAVKAIKEGGTVVAL---TGAVTPPGFRFVVTSNGEVLKKLNPY 349
             +V+ +  G      + + A+  GG    L   +  +       +V   G     +   
Sbjct: 231 GVEVLLEFSGNEAAIHQGLMALIPGGEARILGIPSDPIRFDLAGELVM-RGITAFGIAGR 289

Query: 350 ------------LESGK--VKPIIDPKGPFPFSQVVEAFSYIETNKATGKVVIHP 390
                       + SG+  + P++  +   P S+  EAF  + + +A  KV++ P
Sbjct: 290 RLWQTWMQGTALVYSGRVDLSPLLTHR--LPLSRYREAFGLLASGQA-VKVILDP 341

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 Length = 352

 Score =  130 bits (328), Expect = 1e-34
 Identities = 91/364 (25%), Positives = 140/364 (38%), Gaps = 70/364 (19%)

Query: 81  PSEMKA-WLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAAL------NPVDGKRRQG 133
            S+  +  LY      + L+ ++   +P+ KED+VL+++    +          G  R  
Sbjct: 2   ASDNLSAVLYK----QNDLRLEQ-RPIPEPKEDEVLLQMAYVGICGSDVHYYEHG--RIA 54

Query: 134 KFKATDSPLPTVPGYDVAGVVVKVGTQVKEFKEGDEV---------------YGDINE-- 176
            F   D   P V G++ +G VVKVG  VK  K+GD V                G  N   
Sbjct: 55  DFIVKD---PMVIGHEASGTVVKVGKNVKHLKKGDRVAVEPGVPCRRCQFCKEGKYNLCP 111

Query: 177 --KALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGL-PLAIETAYEGLERTGFSAG 233
                  P   G+LA Y           P N+   + A L PL++        R G   G
Sbjct: 112 DLTFCATPPDDGNLARYYVHAADFCHKLPDNVSLEEGALLEPLSV--GVHACRRAGVQLG 169

Query: 234 KSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGAD--LAIDYTKDNFE 291
            ++LV+ G+G +G + +  AK  +GA  V    S R LE  K+ GAD  L +D  K+   
Sbjct: 170 TTVLVI-GAGPIGLVSVLAAKA-YGAFVVCTARSPRRLEVAKNCGADVTLVVDPAKEEES 227

Query: 292 DLPEK--------FDVVYDAIG--QC-DRAVKAIKEGGTVVALTGAVTPPGFRFVVTSNG 340
            + E+         +V  D  G  +C    +   + GGT++ +           V     
Sbjct: 228 SIIERIRSAIGDLPNVTIDCSGNEKCITIGINITRTGGTLMLVGMGSQMVTVPLVNACAR 287

Query: 341 EVLKK-----LNPY------LESGK--VKPIIDPKGPFPFSQVVEAFSYIETNKATG-KV 386
           E+  K      N Y      + SG+  VK ++     F   Q V+AF           KV
Sbjct: 288 EIDIKSVFRYCNDYPIALEMVASGRCNVKQLVT--HSFKLEQTVDAFEAARKKADNTIKV 345

Query: 387 VIHP 390
           +I  
Sbjct: 346 MISC 349

>3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa} Length = 795

 Score =  134 bits (338), Expect = 2e-34
 Identities = 79/330 (23%), Positives = 130/330 (39%), Gaps = 47/330 (14%)

Query: 90  GEYGGVDVLKFDEK-VTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGY 148
              G +D L   ++      + + +V I + AA +N  D     G +     P     G 
Sbjct: 216 TRPGSLDGLALVDEPTATAPLGDGEVRIAMRAAGVNFRDALIALGMY-----PGVASLGS 270

Query: 149 DVAGVVVKVGTQVKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDF 208
           + AGVVV+ G  V     GD V G I            +       + R++   P    F
Sbjct: 271 EGAGVVVETGPGVTGLAPGDRVMGMIP----------KAFGPLAVADHRMVTRIPAGWSF 320

Query: 209 VQAAGLPLAIETAYEGL-ERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSS 267
            +AA +P+   TAY  L +  G   G+S+LV + +GGVG   IQLA+ + GA  V AT+S
Sbjct: 321 ARAASVPIVFLTAYYALVDLAGLRPGESLLVHSAAGGVGMAAIQLARHL-GA-EVYATAS 378

Query: 268 TRNLEFLKSLGADLAIDYTKDNFEDL------PEKFDVVYDAIG--QCDRAVKAIKEGGT 319
               + +  L  +        +FE            DVV +++     D +++ +  GG 
Sbjct: 379 EDKWQAV-ELSREHLASSRTCDFEQQFLGATGGRGVDVVLNSLAGEFADASLRMLPRGGR 437

Query: 320 VV---------ALTGAVTPPGFRFVV--------TSNGEVLKKLNPYLESGKVKPIIDPK 362
            +          +  A   PG  +             GE+L +L    E   ++P+  P 
Sbjct: 438 FLELGKTDVRDPVEVADAHPGVSYQAFDTVEAGPQRIGEMLHELVELFEGRVLEPL--PV 495

Query: 363 GPFPFSQVVEAFSYIETNKATGKVVIHPIP 392
             +   Q  EA  ++   +  GK+V+   P
Sbjct: 496 TAWDVRQAPEALRHLSQARHVGKLVLTMPP 525

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* Length = 348

 Score =  127 bits (322), Expect = 8e-34
 Identities = 89/358 (24%), Positives = 142/358 (39%), Gaps = 64/358 (17%)

Query: 81  PSEMKAW-LYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKR-RQGKFKAT 138
             +M A        G ++     +V VP+    +VLIKV+A ++   D       ++  +
Sbjct: 2   SEKMVAIMKTKPGYGAEL----VEVDVPKPGPGEVLIKVLATSICGTDLHIYEWNEWAQS 57

Query: 139 DSPLPTVPGYDVAGVVVKVGTQVKEFKEGDEVYGD-------------------INEKAL 179
               P + G++VAG VV++G  V+  + GD V  +                    N K  
Sbjct: 58  RIKPPQIMGHEVAGEVVEIGPGVEGIEVGDYVSVETHIVCGKCYACRRGQYHVCQNTKIF 117

Query: 180 EGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGL-PLAIETAYEGLERTGFSAGKSILV 238
            G    G  AEY  V  + +   PK++    A    PL    A + +   G  +GKS+L+
Sbjct: 118 -GVDTDGVFAEYAVVPAQNIWKNPKSIPPEYATLQEPLGN--AVDTVLA-GPISGKSVLI 173

Query: 239 LNGSGGVGSLVIQLAKQVFGASRVAAT--SSTRNLEFLKSLGADLAIDYTKDNFEDL--- 293
             G+G +G L I +AK   GA  V  +  S  R  E  K +GAD  I+  +++       
Sbjct: 174 T-GAGPLGLLGIAVAK-ASGAYPVIVSEPSDFR-RELAKKVGADYVINPFEEDVVKEVMD 230

Query: 294 ---PEKFDVVYDAIGQ---CDRAVKAIKEGGTVVAL---TGAVTPPGFRFVVT------- 337
                  DV  +  G     ++ ++A+   G V  L    G VT      ++        
Sbjct: 231 ITDGNGVDVFLEFSGAPKALEQGLQAVTPAGRVSLLGLYPGKVTIDFNNLIIFKALTIYG 290

Query: 338 ----SNGEVLKKLNPYLESGK--VKPIIDPKGPFP-FSQVVEAFSYIETNKATGKVVI 388
                  E    ++  L+SGK  + PII     +  F +  EAF  +   K  GKVV 
Sbjct: 291 ITGRHLWETWYTVSRLLQSGKLNLDPIIT--HKYKGFDKYEEAFELMRAGKT-GKVVF 345

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} Length = 404

 Score =  120 bits (304), Expect = 6e-31
 Identities = 69/379 (18%), Positives = 130/379 (34%), Gaps = 86/379 (22%)

Query: 84  MKAWLYGEYGGVDVLKFDEKVTVPQV-KEDQVLIKVVAAA-----LNPVDGKRRQGKFKA 137
           + + ++        ++ +E V  P++ K  +++IKV A       ++             
Sbjct: 32  LGSKVWRYPE----VRVEE-VPEPRIEKPTEIIIKVKACGICGSDVHMAQTDEEGYILYP 86

Query: 138 TDSPLPTVPGYDVAGVVVKVGTQV------KEFKEGDEVYGD------------------ 173
             +  P   G++ +GVVV+ G +       K F+ G+ V  +                  
Sbjct: 87  GLTGFPVTLGHEFSGVVVEAGPEAINRRTNKRFEIGEPVCAEEMLWCGHCRPCAEGFPNH 146

Query: 174 -INEKALEGPKQFGSLAEYTAVEERLLAPKP-------KNLDFVQAAGL-PLAIETAYEG 224
             N   L G    G+ AEY  V+ +              +  F+  + + P ++      
Sbjct: 147 CENLNEL-GFNVDGAFAEYVKVDAKYAWSLRELEGVYEGDRLFLAGSLVEPTSVAYNAVI 205

Query: 225 LERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAAT--SSTRNLEFLKSLGADLA 282
           +   G   G ++++L G G +G   + + K   GAS+V  +  S  R     K LGAD  
Sbjct: 206 VRGGGIRPGDNVVIL-GGGPIGLAAVAILKH-AGASKVILSEPSEVR-RNLAKELGADHV 262

Query: 283 IDYTKDNFEDL------PEKFDVVYDAIG------QCDRAVKAIKEGGTV-VALTGAVTP 329
           ID TK+NF +            +  +A G           V     G    VA+      
Sbjct: 263 IDPTKENFVEAVLDYTNGLGAKLFLEATGVPQLVWPQIEEVIWRARGINATVAIVA---R 319

Query: 330 PGFRFVVTSNGEVLKKLN-----------------PYLESG-KVKPIIDPKGPFPFSQVV 371
              +  +T     +++                     + SG  +  II         ++ 
Sbjct: 320 ADAKIPLTGEVFQVRRAQIVGSQGHSGHGTFPRVISLMASGMDMTKIISKT--VSMEEIP 377

Query: 372 EAFSYIETNKATGKVVIHP 390
           E    ++T+K+  KV +  
Sbjct: 378 EYIKRLQTDKSLVKVTMLN 396

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* Length = 340

 Score =  118 bits (299), Expect = 1e-30
 Identities = 84/359 (23%), Positives = 132/359 (36%), Gaps = 75/359 (20%)

Query: 82  SEMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAA-----LNPVDGKRRQGKFK 136
           + MKA +   +G    +    +V VPQ    QV +K+ A+      L+  DG        
Sbjct: 1   AMMKAAVVRAFGAPLTID---EVPVPQPGPGQVQVKIEASGVCHTDLHAADGDWPVK--- 54

Query: 137 ATDSPLPTVPGYDVAGVVVKVGTQVKEFKEGDEV----------------YGDIN---EK 177
                LP +PG++  G V  VG+ V   KEGD V                 G      ++
Sbjct: 55  ---PTLPFIPGHEGVGYVSAVGSGVSRVKEGDRVGVPWLYSACGYCEHCLQGWETLCEKQ 111

Query: 178 ALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPL--AIETAYEGLERTGFSAGKS 235
              G    G   EY   +   +   P  + FV+ A  P+  A  T Y+GL+ T    G+ 
Sbjct: 112 QNTGYSVNGGYGEYVVADPNYVGLLPDKVGFVEIA--PILCAGVTVYKGLKVTDTRPGQW 169

Query: 236 ILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTK-DNFEDLP 294
           +++  G GG+G + +Q A+   G    A       L   + LGA++A++    D    L 
Sbjct: 170 VVIS-GIGGLGHVAVQYAR-AMGLRVAAVDIDDAKLNLARRLGAEVAVNARDTDPAAWLQ 227

Query: 295 EK---FDVVYD------AIGQCDRAVKAIKEGGTVVAL---TGAVTPPGFRFVVTS---- 338
           ++      V        A  Q   A+  ++ GGT+       G    P F  V+      
Sbjct: 228 KEIGGAHGVLVTAVSPKAFSQ---AIGMVRRGGTIALNGLPPGDFGTPIFDVVLKGITIR 284

Query: 339 ---NG------EVLKKLNPYLESGKVKPIIDPKGPFPFSQVVEAFSYIETNKATGKVVI 388
               G      E L     +   G VK  +          V + F  +   K  G+VV+
Sbjct: 285 GSIVGTRSDLQESLD----FAAHGDVKATVS---TAKLDDVNDVFGRLREGKVEGRVVL 336

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} Length = 347

 Score =  117 bits (296), Expect = 4e-30
 Identities = 83/359 (23%), Positives = 137/359 (38%), Gaps = 65/359 (18%)

Query: 79  TVPSEMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKAT 138
           ++P   K  ++ E  G    K    + VP+ K +++LI V  + +   D     G +   
Sbjct: 1   SIPETQKGVIFYESHGKLEYK---DIPVPKPKANELLINVKYSGVCHTDLHAWHGDWPLP 57

Query: 139 DSPLPTVPGYDVAGVVVKVGTQVKEFKEGDEV-----YG-----DINEKALEG--PKQF- 185
              LP V G++ AGVVV +G  VK +K GD        G     +  E   E   P    
Sbjct: 58  -VKLPLVGGHEGAGVVVGMGENVKGWKIGDYAGIKWLNGSCMACEYCELGNESNCPHADL 116

Query: 186 ------GSLAEYTAVEERLLAPKPKNLDFVQAAGLPL--AIETAYEGLERTGFSAGKSIL 237
                 GS  +Y   +    A  P+  D  Q A  P+  A  T Y+ L+     AG  + 
Sbjct: 117 SGYTHDGSFQQYATADAVQAAHIPQGTDLAQVA--PILCAGITVYKALKSANLMAGHWVA 174

Query: 238 VLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDN------FE 291
           +   +GG+GSL +Q AK   G   +         E  +S+G ++ ID+TK+        +
Sbjct: 175 ISGAAGGLGSLAVQYAK-AMGYRVLGIDGGEGKEELFRSIGGEVFIDFTKEKDIVGAVLK 233

Query: 292 DLPEKFDVVYD------AIGQCDRAVKAIKEGGTVVALTGAVTPPGFRFVVTSNGEVLKK 345
                   V +      AI     + + ++  GT V + G   P G +       +V+K 
Sbjct: 234 ATDGGAHGVINVSVSEAAIEA---STRYVRANGTTVLV-GM--PAGAKCCSDVFNQVVKS 287

Query: 346 LN----------------PYLESGKVKPIIDPKGPFPFSQVVEAFSYIETNKATGKVVI 388
           ++                 +   G VK  I        S + E +  +E  +  G+ V+
Sbjct: 288 ISIVGSYVGNRADTREALDFFARGLVKSPIK---VVGLSTLPEIYEKMEKGQIVGRYVV 343

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A Length = 339

 Score =  117 bits (295), Expect = 4e-30
 Identities = 90/357 (25%), Positives = 137/357 (38%), Gaps = 75/357 (21%)

Query: 84  MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAA-----LNPVDGKRRQGKFKAT 138
           MKA +  ++     +K   +V  P +   +VL+++ A       L+   G          
Sbjct: 1   MKAAVVEQFKEPLKIK---EVEKPTISYGEVLVRIKACGVCHTDLHAAHGDWPVK----- 52

Query: 139 DSPLPTVPGYDVAGVVVKVGTQVKEFKEGDEV----------------YGDIN---EKAL 179
              LP +PG++  G+V +VG  V   K GD V                 G       +  
Sbjct: 53  -PKLPLIPGHEGVGIVEEVGPGVTHLKVGDRVGIPWLYSACGHCDYCLSGQETLCEHQKN 111

Query: 180 EGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPL--AIETAYEGLERTGFSAGKSIL 237
            G    G  AEY       +   P NL F +AA  P+  A  T Y+ L+ TG   G+ + 
Sbjct: 112 AGYSVDGGYAEYCRAAADYVVKIPDNLSFEEAA--PIFCAGVTTYKALKVTGAKPGEWVA 169

Query: 238 VLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTK-DNFEDLPEK 296
           +  G GG+G + +Q AK   G + VA       LE  K LGADL ++  K D  + + EK
Sbjct: 170 IY-GIGGLGHVAVQYAK-AMGLNVVAVDIGDEKLELAKELGADLVVNPLKEDAAKFMKEK 227

Query: 297 ---FDVVYD------AIGQCDRAVKAIKEGGTVVAL---TGAVTPPGFRFVVTS------ 338
                          A      A  +I+ GG  V +      +  P F  V+        
Sbjct: 228 VGGVHAAVVTAVSKPAFQS---AYNSIRRGGACVLVGLPPEEMPIPIFDTVLNGIKIIGS 284

Query: 339 -NG------EVLKKLNPYLESGKVKPIIDPKGPFPFSQVVEAFSYIETNKATGKVVI 388
             G      E L+    +   GKVK II+     P  ++ E F  +   +  G+VV+
Sbjct: 285 IVGTRKDLQEALQ----FAAEGKVKTIIE---VQPLEKINEVFDRMLKGQINGRVVL 334

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa} Length = 363

 Score =  117 bits (295), Expect = 6e-30
 Identities = 78/384 (20%), Positives = 126/384 (32%), Gaps = 86/384 (22%)

Query: 69  STEAEPTKVGTVPSEMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAAL----- 123
           ++ A  T +G   +        E         +      ++KE +V + V +  +     
Sbjct: 2   ASSASKTNIGVFTNPQHDLWISEAS----PSLESVQKGEELKEGEVTVAVRSTGICGSDV 57

Query: 124 -NPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKEFKEGDEVYGDINEKALEG- 181
                G    G           V G++ AG V+ V   VK  K GD V       A+E  
Sbjct: 58  HFWKHG--CIGPMIVEC---DHVLGHESAGEVIAVHPSVKSIKVGDRV-------AIEPQ 105

Query: 182 -------------------------PKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGL-P 215
                                    P   G L  Y             N+ +   A L P
Sbjct: 106 VICNACEPCLTGRYNGCERVDFLSTPPVPGLLRRYVNHPAVWCHKIG-NMSYENGAMLEP 164

Query: 216 LAIETAYEGLERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAAT--SSTRNLEF 273
           L++  A  GL+R G   G  +L+  G+G +G + +  AK   GA  +  T     R L+F
Sbjct: 165 LSV--ALAGLQRAGVRLGDPVLIC-GAGPIGLITMLCAK-AAGACPLVITDIDEGR-LKF 219

Query: 274 LKSLGADLAIDYTKD-NFEDLPEK---------FDVVYDAIG--QC-DRAVKAIKEGGTV 320
            K +  ++     +  + E+  +K           V  +  G       A+ A+K GG V
Sbjct: 220 AKEICPEVVTHKVERLSAEESAKKIVESFGGIEPAVALECTGVESSIAAAIWAVKFGGKV 279

Query: 321 VALTGAVTPPGFRFVVTSNGEV-LKKLNPY----------LESGK--VKPIIDPKGPFPF 367
             +          F+  S  EV L+    Y          +E+G   +  ++     FP 
Sbjct: 280 FVIGVGKNEIQIPFMRASVREVDLQFQYRYCNTWPRAIRLVENGLVDLTRLVT--HRFPL 337

Query: 368 SQVVEAFSYIETNKATG-KVVIHP 390
              ++AF      K    KV I  
Sbjct: 338 EDALKAFETASDPKTGAIKVQIQS 361

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1 Length = 380

 Score =  113 bits (285), Expect = 2e-28
 Identities = 59/361 (16%), Positives = 130/361 (36%), Gaps = 87/361 (24%)

Query: 102 EKVTVPQVKEDQVLIKVVAAA-----LNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVK 156
           ++  +  +    +L+++++A      ++   G+  +          P + G++ AG VV+
Sbjct: 33  KEFEISDIPRGSILVEILSAGVCGSDVHMFRGEDPRVPL-------PIILGHEGAGRVVE 85

Query: 157 VGTQVK-----EFKEGDEVYGD---------------------------INEKALEGPKQ 184
           V  + +       K GD +  +                           IN    E P  
Sbjct: 86  VNGEKRDLNGELLKPGDLIVWNRGITCGECYWCKVSKEPYLCPNRKVYGINRGCSEYPHL 145

Query: 185 FGSLAEYTAVE-ERLLAPKPKNLDFVQAAGLPLAIETAYEGLERTGF-SAGKSILVLNGS 242
            G  + +  ++ E  +    +  D    A    +  TAY   +      AGK++++  G+
Sbjct: 146 RGCYSSHIVLDPETDVLKVSEKDDLDVLAMAMCSGATAYHAFDEYPESFAGKTVVIQ-GA 204

Query: 243 GGVGSLVIQLAKQVFGASRVAAT--SSTRNLEFLKSLGADLAIDYTKDNFEDLPEK---- 296
           G +G   + +A+ + GA  V     S  R L+  + +GADL ++  + + E+  +     
Sbjct: 205 GPLGLFGVVIARSL-GAENVIVIAGSPNR-LKLAEEIGADLTLNRRETSVEERRKAIMDI 262

Query: 297 -----FDVVYDAIGQCD---RAVKAIKEGGTVVALTGAVTPPGFRF------VVTSNG-- 340
                 D + +A G         + ++ GG    + G V  P           +      
Sbjct: 263 THGRGADFILEATGDSRALLEGSELLRRGGFYS-VAG-VAVPQDPVPFKVYEWLVLKNAT 320

Query: 341 ----------EVLKKLNPYLESG-KVKPIIDPKGPFPFSQVVEAFSYIETNKATGKVVIH 389
                       +K ++    +   +  +I  +   P  +  +A   +E+ +A  KV+++
Sbjct: 321 FKGIWVSDTSHFVKTVSITSRNYQLLSKLITHR--LPLKEANKALELMESREA-LKVILY 377

Query: 390 P 390
           P
Sbjct: 378 P 378

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A* Length = 366

 Score =  113 bits (284), Expect = 2e-28
 Identities = 60/377 (15%), Positives = 107/377 (28%), Gaps = 86/377 (22%)

Query: 84  MKA-WLYGEYGGVDVLKFDEKVTVPQV-KEDQVLIKVVAAALNPVDG------KRRQGKF 135
           MKA  +     GV V    + V   ++    ++ I+ +      + G        +    
Sbjct: 1   MKAIIVKPPNAGVQV----KDVDEKKLDSYGKIKIRTIYNG---ICGADREIVNGKLTLS 53

Query: 136 KATDSPLPTVPGYDVAGVVVKVGTQVKEFKEGDEVYGDINE------------------- 176
                    V G++  GVV +       F +GD V                         
Sbjct: 54  TLPKGKDFLVLGHEAIGVVEESYH---GFSQGDLVMPVNRRGCGICRNCLVGRPDFCETG 110

Query: 177 --KALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAI------------ETAY 222
                   K  G + E+   + + L   PK+++ +     PLA             +   
Sbjct: 111 EFGEAGIHKMDGFMREWWYDDPKYLVKIPKSIEDIGILAQPLADIEKSIEEILEVQKRVP 170

Query: 223 EGLERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLA 282
                 G    + +LV+ G+G +G L   L +  +G     A       E  +++  +  
Sbjct: 171 VWTCDDGTLNCRKVLVV-GTGPIGVLFTLLFRT-YGLEVWMANRREP-TEVEQTVIEETK 227

Query: 283 IDYTK-----DNFEDLPEKFDVVYDAIGQ----CDRAVKAIKEGGTVVALTGAVTPPGFR 333
            +Y       D  +D   KFDV+ DA G         +  +   G +  L G  T     
Sbjct: 228 TNYYNSSNGYDKLKDSVGKFDVIIDATGADVNILGNVIPLLGRNGVLG-LFGFSTSGSVP 286

Query: 334 FVVTSNGEVLKK---------LNPY--------LESGKVKPIIDPK----GPFPFSQVVE 372
               +  E++                       L S K       K         +   E
Sbjct: 287 LDYKTLQEIVHTNKTIIGLVNGQKPHFQQAVVHLASWKTLYPKAAKMLITKTVSINDEKE 346

Query: 373 AFSYIETNKATG-KVVI 388
               +   +    K+ I
Sbjct: 347 LLKVLREKEHGEIKIRI 363

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A* Length = 357

 Score =  111 bits (279), Expect = 1e-27
 Identities = 68/373 (18%), Positives = 119/373 (31%), Gaps = 89/373 (23%)

Query: 84  MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDG-------KRRQGKFK 136
           MKA       G D     E    P+ +  + L++ +      V G           G  +
Sbjct: 1   MKAIAV--KRGEDRPVVIE-KPRPEPESGEALVRTLRVG---VCGTDHEVIAGGHGGFPE 54

Query: 137 ATDSPLPTVPGYDVAGVVVKVGTQVKEFKEGDEVYGDI---------------------N 175
             D     V G++  GVVV       E +EGD V   +                     +
Sbjct: 55  GED---HLVLGHEAVGVVVDPN--DTELEEGDIVVPTVRRPPASGTNEYFERDQPDMAPD 109

Query: 176 EKALE--GPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGL-PLAIETAYEGLERTGFSA 232
               E       G ++E+    E+ L   P++        + P++I    + LE    S 
Sbjct: 110 GMYFERGIVGAHGYMSEFFTSPEKYLVRIPRSQA-ELGFLIEPISI--TEKALEHAYASR 166

Query: 233 ------GKSILVLNGSGGVGSLVIQLAK-QVFGASRVAATSST----RNLEFLKSLGADL 281
                   S  VL G+G +G L + + K    G   +            ++ ++ L A  
Sbjct: 167 SAFDWDPSSAFVL-GNGSLGLLTLAMLKVDDKGYENLYCLGRRDRPDPTIDIIEELDAT- 224

Query: 282 AIDYTKDNFEDLPEK---FDVVYDAIGQ---CDRAVKAIKEGGTVVAL-TGAVTPPGFRF 334
            +D  +   ED+P+     D +Y+A G      ++V+A+   G    L   +        
Sbjct: 225 YVDSRQTPVEDVPDVYEQMDFIYEATGFPKHAIQSVQALAPNGVGALLGVPSDWAFEVDA 284

Query: 335 VVTSNGEVLKKLN-----------------PYLESGK--VKPIIDPKGPFPFSQVVEAFS 375
                  VL                      + +  K  ++ ++   G  P S+   AF 
Sbjct: 285 GAFHREMVLHNKALVGSVNSHVEHFEAATVTFTKLPKWFLEDLVT--GVHPLSEFEAAF- 341

Query: 376 YIETNKATGKVVI 388
             + +  T K  I
Sbjct: 342 --DDDDTTIKTAI 352

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* Length = 2512

 Score =  108 bits (272), Expect = 1e-25
 Identities = 67/354 (18%), Positives = 115/354 (32%), Gaps = 56/354 (15%)

Query: 74   PTKVGTVPSEMKAWLY--GEYGGVDVLKFDE--KVTVPQVKEDQVLIKVVAAALNPVDGK 129
            P +      + +         G +  +++                L  V   +LN  D  
Sbjct: 1518 PLEQDRPEKQTEHAFVNVLSRGDLSSIRWVCSPLHYALPASCQDRLCSVYYTSLNFRDVM 1577

Query: 130  RRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKEFKEGDEVYGDINEKALEGPKQFGSLA 189
               GK         ++PG  +    +           G  V G +  +         +  
Sbjct: 1578 LATGKL-----SPDSIPGKWLTRDCMLGMEFSGRDASGRRVMGMVPAEG------LATSV 1626

Query: 190  EYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGL-ERTGFSAGKSILVLNGSGGVGSL 248
                + +      P      +AA +P+   TAY  L  R     G+S+L+ +GSGGVG  
Sbjct: 1627 ---LLLQHATWEVPSTWTLEEAASVPIVYTTAYYSLVVRGRMQPGESVLIHSGSGGVGQA 1683

Query: 249  VIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKD----NFEDL------PEKFD 298
             I +A    G        S     +L++    L      +    +FE         +  D
Sbjct: 1684 AIAIALS-RGCRVFTTVGSAEKRAYLQARFPQLDETCFANSRDTSFEQHVLRHTAGKGVD 1742

Query: 299  VVYDAIGQ--CDRAVKAIKEGGTVV-----------ALTGAVTPPGFRFVVTSN------ 339
            +V +++ +     +V+ + + G  +           AL  AV      F           
Sbjct: 1743 LVLNSLAEEKLQASVRCLAQHGRFLEIGKFDLSNNHALGMAVFLKNVTFHGILLDSLFEE 1802

Query: 340  -----GEVLKKLNPYLESGKVKPIIDPKGPFPFSQVVEAFSYIETNKATGKVVI 388
                  EV + L   ++ G V+P       FP ++V  AF Y+   K  GKVVI
Sbjct: 1803 GGATWQEVSELLKAGIQEGVVQP--LKCTVFPRTKVEAAFRYMAQGKHIGKVVI 1854

>1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A* Length = 330

 Score = 91.2 bits (227), Expect = 9e-21
 Identities = 67/237 (28%), Positives = 103/237 (43%), Gaps = 29/237 (12%)

Query: 102 EKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQV 161
           + ++   + +D VLIKV  + +N  DG   +          P + G D AG VV   +  
Sbjct: 22  KTISTEDLPKDGVLIKVAYSGINYKDGLAGKAGGNIVRE-YPLILGIDAAGTVVS--SND 78

Query: 162 KEFKEGDEV----YGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLA 217
             F EGDEV    Y         G  + G L+EY +V    L P P+NL   +A     A
Sbjct: 79  PRFAEGDEVIATSYE-------LGVSRDGGLSEYASVPGDWLVPLPQNLSLKEAMVYGTA 131

Query: 218 IETA---YEGLERTGFSAGKSILVLNGS-GGVGSLVIQLAKQVFGASRVAATSSTRNLEF 273
             TA      LE+ G S  K  +++ G+ GGVG + + +  +  G   VA+T +    ++
Sbjct: 132 GFTAALSVHRLEQNGLSPEKGSVLVTGATGGVGGIAVSMLNK-RGYDVVASTGNREAADY 190

Query: 274 LKSLGADLAIDYTKDNFEDLPEK------FDVVYDAIG--QCDRAVKAIKEGGTVVA 322
           LK LGA   I   +++  D   K      +    D +G  Q    +  I+ GG+V  
Sbjct: 191 LKQLGASEVIS--REDVYDGTLKALSKQQWQGAVDPVGGKQLASLLSKIQYGGSVAV 245

>3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A* Length = 324

 Score = 90.1 bits (224), Expect = 2e-20
 Identities = 64/253 (25%), Positives = 97/253 (38%), Gaps = 28/253 (11%)

Query: 84  MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLP 143
           M+A +  +  G  +    + +   Q+    V + V  ++LN  D     GK K      P
Sbjct: 1   MQALILEQQDGKTLASV-QHLEESQLPAGDVTVDVHWSSLNYKDALAITGKGKIIRH-FP 58

Query: 144 TVPGYDVAGVVVKVGTQVKEFKEGDEV----YGDINEKALEGPKQFGSLAEYTAVEERLL 199
            +PG D AG V    ++   F  G EV    +G        G   +G LAE   V+   L
Sbjct: 59  MIPGIDFAGTVHA--SEDPRFHAGQEVLLTGWG-------VGENHWGGLAERARVKGDWL 109

Query: 200 APKPKNLDFVQAAGLPLAIETA---YEGLERTG-FSAGKSILVLNGSGGVGSLVIQLAKQ 255
              P  L    A  +  A  TA      LE  G       ++V   SGGVGS  + L  +
Sbjct: 110 VALPAGLSSRNAMIIGTAGFTAMLCVMALEDAGIRPQDGEVVVTGASGGVGSTAVALLHK 169

Query: 256 VFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFED----LPEKFDVVYDAIG--QCDR 309
             G    A +       +LKSLGA+  +   +D F +      + +    D +G     +
Sbjct: 170 -LGYQVAAVSGRESTHGYLKSLGANRILS--RDEFAESRPLEKQLWAGAIDTVGDKVLAK 226

Query: 310 AVKAIKEGGTVVA 322
            +  +  GG V A
Sbjct: 227 VLAQMNYGGCVAA 239

>1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 Length = 328

 Score = 88.9 bits (221), Expect = 5e-20
 Identities = 61/237 (25%), Positives = 100/237 (42%), Gaps = 29/237 (12%)

Query: 102 EKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQV 161
           + +++  + E  VL++V  +++N  DG       K   +  P VPG D+AGVVV   +Q 
Sbjct: 21  QTISMDDLPEGDVLVRVHYSSVNYKDGLASIPDGKIVKT-YPFVPGIDLAGVVVS--SQH 77

Query: 162 KEFKEGDEV----YGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLA 217
             F+EGDEV    Y         G   FG  +EY  +    L P PK L   +A  +  A
Sbjct: 78  PRFREGDEVIATGYE-------IGVTHFGGYSEYARLHGEWLVPLPKGLTLKEAMAIGTA 130

Query: 218 IETAYEGL----ERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEF 273
             TA   +    E         +LV   +GGVGSL + +  +  G +  A+T      ++
Sbjct: 131 GFTAALSIHRLEEHGLTPERGPVLVTGATGGVGSLAVSMLAK-RGYTVEASTGKAAEHDY 189

Query: 274 LKSLGADLAIDYTKDNFEDLPEK------FDVVYDAIG--QCDRAVKAIKEGGTVVA 322
           L+ LGA   +   +++      +      +    D +G       +  ++ GG V  
Sbjct: 190 LRVLGAKEVLA--REDVMAERIRPLDKQRWAAAVDPVGGRTLATVLSRMRYGGAVAV 244

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A Length = 352

 Score = 78.0 bits (193), Expect = 3e-16
 Identities = 75/368 (20%), Positives = 127/368 (34%), Gaps = 82/368 (22%)

Query: 84  MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAA-----LNPVDGKRRQGKFKAT 138
           MK +     G V       +   P       +++ +A A     ++ V          A 
Sbjct: 1   MKGFAMLSIGKVGW----IEKEKPAPGPFDAIVRPLAVAPCTSDIHTVFEG-------AI 49

Query: 139 DSPLPTVPGYDVAGVVVKVGTQVKEFKEGDEV----------------------YGDINE 176
                 + G++  G VV+VG++VK+FK GD V                       G +  
Sbjct: 50  GERHNMILGHEAVGEVVEVGSEVKDFKPGDRVVVPAITPDWRTSEVQRGYHQHSGGMLAG 109

Query: 177 KALEGPKQFGSLAEYTAVE--ERLLAPKPKNLDFVQAAGLPLAIETAYEGLERTGFSAGK 234
                 K  G   E+  V   +  LA  PK +    A  +P  + T + G E      G 
Sbjct: 110 WKFSNVKD-GVFGEFFHVNDADMNLAHLPKEIPLEAAVMIPDMMTTGFHGAELANIKLGD 168

Query: 235 SILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRN-LEFLKSLGADLAIDYTKDNFEDL 293
           ++ V+ G G VG + +  A    GA R+ A  S ++  +     GA   I+Y      D+
Sbjct: 169 TVCVI-GIGPVGLMSVAGANH-LGAGRIFAVGSRKHCCDIALEYGATDIINYKN---GDI 223

Query: 294 PEK---------FDVVYDAIGQC---DRAVKAIKEGGTV-----------VALTGAVTPP 330
            E+          D V  A G      +AVK IK G  +           + +  +    
Sbjct: 224 VEQILKATDGKGVDKVVIAGGDVHTFAQAVKMIKPGSDIGNVNYLGEGDNIDIPRSEWGV 283

Query: 331 GFRFVVTSNGEV------LKKLNPYLESGKVKP--IIDPKGPFPFSQVVEAFSYIETNKA 382
           G        G        +++L   +   +V P  ++       F  + +AF  ++ +K 
Sbjct: 284 GMGHKHIHGGLCPGGRLRMERLIDLVFYKRVDPSKLVTHVFR-GFDNIEKAFMLMK-DKP 341

Query: 383 TG--KVVI 388
               K V+
Sbjct: 342 KDLIKPVV 349

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A* Length = 357

 Score = 73.8 bits (182), Expect = 1e-14
 Identities = 57/198 (28%), Positives = 83/198 (41%), Gaps = 37/198 (18%)

Query: 139 DSPLPTVPGYDVAGVVVKVGTQVKEFKEGD---------------------EVY-----G 172
            S  P VPG++V G VV+VG+ V +F  GD                     E Y      
Sbjct: 60  MSNYPMVPGHEVVGEVVEVGSDVSKFTVGDIVGVGCLVGCCGGCSPCERDLEQYCPKKIW 119

Query: 173 DINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPL--AIETAYEGLERTGF 230
             N+  + G    G  A+ T V ++ +   P+ +   QAA  PL  A  T Y  L   G 
Sbjct: 120 SYNDVYINGQPTQGGFAKATVVHQKFVVKIPEGMAVEQAA--PLLCAGVTVYSPLSHFGL 177

Query: 231 -SAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRN--LEFLKSLGADLAIDYT- 286
              G    +L G GGVG + +++AK   G   V   SS+     E L+ LGAD  +  + 
Sbjct: 178 KQPGLRGGIL-GLGGVGHMGVKIAK-AMGH-HVTVISSSNKKREEALQDLGADDYVIGSD 234

Query: 287 KDNFEDLPEKFDVVYDAI 304
           +    +L +  D V D +
Sbjct: 235 QAKMSELADSLDYVIDTV 252

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 Length = 369

 Score = 73.8 bits (182), Expect = 1e-14
 Identities = 51/198 (25%), Positives = 76/198 (38%), Gaps = 37/198 (18%)

Query: 139 DSPLPTVPGYDVAGVVVKVGTQVKEFKEGDEV---------------------------- 170
            +  P VPG+++ G VV VG QV+++  GD V                            
Sbjct: 73  GTVYPCVPGHEIVGRVVAVGDQVEKYAPGDLVGVGCIVDSCKHCEECEDGLENYCDHMTG 132

Query: 171 -YGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPL--AIETAYEGLER 227
            Y              G  ++   V ER +       + + A   PL  A  T Y  L  
Sbjct: 133 TYNSPTPDE--PGHTLGGYSQQIVVHERYVLRIRHPQEQLAAVA-PLLCAGITTYSPLRH 189

Query: 228 TGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYT- 286
                GK + V+ G GG+G + I+LA    GA  VA T+S    E  K+LGAD  ++   
Sbjct: 190 WQAGPGKKVGVV-GIGGLGHMGIKLAH-AMGAHVVAFTTSEAKREAAKALGADEVVNSRN 247

Query: 287 KDNFEDLPEKFDVVYDAI 304
            D      + FD + + +
Sbjct: 248 ADEMAAHLKSFDFILNTV 265

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} Length = 348

 Score = 73.4 bits (181), Expect = 1e-14
 Identities = 43/197 (21%), Positives = 74/197 (37%), Gaps = 40/197 (20%)

Query: 139 DSPLPTVPGYDVAGVVVKVGTQVKEFKEGDEV---------------------------- 170
           +   P +PG+++AG++ +VG  VK+FK GD V                            
Sbjct: 55  EGIYPMIPGHEIAGIIKEVGKGVKKFKIGDVVGVGCFVNSCKACKPCKEHQEQFCTKVVF 114

Query: 171 -YGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPL--AIETAYEGLER 227
            Y  + +   +     G  +    V+E  +    KN    + A  PL  A  T Y  L+ 
Sbjct: 115 TYDCL-DSFHDNEPHMGGYSNNIVVDENYVISVDKNAPLEKVA--PLLCAGITTYSPLKF 171

Query: 228 TGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTK 287
           +  + G  + V  G GG+GS+ ++ A    GA       +    +   S+G      +  
Sbjct: 172 SKVTKGTKVGVA-GFGGLGSMAVKYAV-AMGAEVSVFARNEHKKQDALSMGVK---HFYT 226

Query: 288 DNFEDLPEKFDVVYDAI 304
           D  +   E+ D +   I
Sbjct: 227 DP-KQCKEELDFIISTI 242

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A* Length = 366

 Score = 73.4 bits (181), Expect = 1e-14
 Identities = 50/198 (25%), Positives = 82/198 (41%), Gaps = 37/198 (18%)

Query: 139 DSPLPTVPGYDVAGVVVKVGTQVKEFKEGD---------------------EVY-----G 172
            S  P VPG+++ G V +VG++VK+   GD                     E Y      
Sbjct: 67  FSMYPLVPGHEIVGEVTEVGSKVKKVNVGDKVGVGCLVGACHSCESCANDLENYCPKMIL 126

Query: 173 DINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPL--AIETAYEGLERTGF 230
                  +G   +G  + +    ER +   P N+     A  PL  A  T Y  L+  G 
Sbjct: 127 TYASIYHDGTITYGGYSNHMVANERYIIRFPDNMPLDGGA--PLLCAGITVYSPLKYFGL 184

Query: 231 -SAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRN--LEFLKSLGADLAIDYT- 286
              GK I ++ G GG+G + ++ AK  FG+ +V   S++ +   E LK+ GAD  +    
Sbjct: 185 DEPGKHIGIV-GLGGLGHVAVKFAK-AFGS-KVTVISTSPSKKEEALKNFGADSFLVSRD 241

Query: 287 KDNFEDLPEKFDVVYDAI 304
           ++  +      D + D +
Sbjct: 242 QEQMQAAAGTLDGIIDTV 259

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 Length = 371

 Score = 72.9 bits (180), Expect = 2e-14
 Identities = 62/285 (21%), Positives = 99/285 (34%), Gaps = 67/285 (23%)

Query: 102 EKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQV 161
           + + + Q + D+VL+KVVA  +   D   R  K+     PLP V G++ +G++  +G  V
Sbjct: 22  QALKIRQPQGDEVLVKVVATGMCHTDLIVRDQKYPV---PLPAVLGHEGSGIIEAIGPNV 78

Query: 162 KEFKEGDEV-----------------------YGDINEKAL--EGPKQF----------- 185
            E + GD V                       +   N      EG               
Sbjct: 79  TELQVGDHVVLSYGYCGKCTQCNTGNPAYCSEFFGRNFSGADSEGNHALCTHDQGVVNDH 138

Query: 186 ----GSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEG--LERTGFSAGKSILVL 239
                S A Y    E       K++       L   I+T   G  +     +   S +  
Sbjct: 139 FFAQSSFATYALSRENNTVKVTKDVPIELLGPLGCGIQTGA-GACINALKVTPASSFVTW 197

Query: 240 NGSGGVGSLVIQLAKQVFGASRVAA--TSSTRNLEFLKSLGADLAIDYTKDNFEDLPEK- 296
            G+G VG   +  AK   GAS + A     +R LE  K LGA   I+ +K   +D     
Sbjct: 198 -GAGAVGLSALLAAKVC-GASIIIAVDIVESR-LELAKQLGATHVIN-SKT--QDPVAAI 251

Query: 297 -------FDVVYDAIGQCD---RAVKAIKEGGTVVALTGAVTPPG 331
                   +   ++ G  +   + V A+   G +  + G     G
Sbjct: 252 KEITDGGVNFALESTGSPEILKQGVDALGILGKIA-VVG-APQLG 294

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 Length = 198

 Score = 68.8 bits (169), Expect = 8e-14
 Identities = 28/86 (32%), Positives = 44/86 (51%), Gaps = 4/86 (4%)

Query: 197 RLLAPKPKNLDFVQAAGLPLAIETAYEGL-ERTGFSAGKSILVLNGSGGVGSLVIQLAKQ 255
            L+ P P  L   +AA   +A  TA+  L E    S G+ +L+ + +GGVG   + +AK 
Sbjct: 2   DLVVPIPDTLADNEAATFGVAYLTAWHSLCEVGRLSPGERVLIHSATGGVGMAAVSIAKM 61

Query: 256 VFGASRVAATSSTRN-LEFLKSLGAD 280
           + GA R+  T+ +    E L  LG +
Sbjct: 62  I-GA-RIYTTAGSDAKREMLSRLGVE 85

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A Length = 360

 Score = 66.0 bits (162), Expect = 4e-12
 Identities = 51/197 (25%), Positives = 78/197 (39%), Gaps = 35/197 (17%)

Query: 139 DSPLPTVPGYDVAGVVVKVGTQV-KEFKEGD---------------------EVY----- 171
           +  +P V G+++ G VVK+G +     K G                      E Y     
Sbjct: 59  NMKMPLVVGHEIVGKVVKLGPKSNSGLKVGQRVGVGAQVFSCLECDRCKNDNEPYCTKFV 118

Query: 172 GDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPL--AIETAYEGLERTG 229
              ++   +G    G  A Y  V E  + P P+N+    AA  PL     T Y  L R G
Sbjct: 119 TTYSQPYEDGYVSQGGYANYVRVHEHFVVPIPENIPSHLAA--PLLCGGLTVYSPLVRNG 176

Query: 230 FSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGAD--LAIDYTK 287
              GK + ++ G GG+GS+   ++K   GA     + S+R  E    +GAD  +A     
Sbjct: 177 CGPGKKVGIV-GLGGIGSMGTLISKA-MGAETYVISRSSRKREDAMKMGADHYIATLEEG 234

Query: 288 DNFEDLPEKFDVVYDAI 304
           D  E   + FD++    
Sbjct: 235 DWGEKYFDTFDLIVVCA 251

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A* Length = 333

 Score = 65.6 bits (161), Expect = 4e-12
 Identities = 71/335 (21%), Positives = 127/335 (37%), Gaps = 80/335 (23%)

Query: 102 EKVTVPQVKEDQVLIKVVAAALNPVDGKR-RQGKFKATDSPLPTVPGYDVAGVVVKVGTQ 160
           + V +P +K  +VL++ +  +++P    R    + K        + G  V   VV+  ++
Sbjct: 29  KTVELPPLKNGEVLLEALFLSVDP--YMRIASKRLKEGA----VMMGQQV-ARVVE--SK 79

Query: 161 VKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAI-- 218
              F  G  V                    +   + + L      L       LPL++  
Sbjct: 80  NSAFPAGSIVLA------------QSGWTTHFISDGKGLEK----LLTEWPDKLPLSLAL 123

Query: 219 -------ETAYEGLERTG-FSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRN 270
                   TAY GL        G+++LV   +G VGS+V Q+AK + G   V A  S   
Sbjct: 124 GTIGMPGLTAYFGLLEVCGVKGGETVLVSAAAGAVGSVVGQIAK-LKGCKVVGAAGSDEK 182

Query: 271 LEFLKSLGADLAIDY-TKDNFEDL-----PEKFDVVYDAIG--QCDRAVKAIKEGGTVVA 322
           + +LK +G D A +Y T ++ E+      P+ +D  +D +G    +  +  +K+ G  +A
Sbjct: 183 IAYLKQIGFDAAFNYKTVNSLEEALKKASPDGYDCYFDNVGGEFLNTVLSQMKDFGK-IA 241

Query: 323 LTGAV-------TPPGFR--------------FVVTS-----NGEVLKKLNPYLESGKVK 356
           + GA+         P                 F+V         + L+ L  ++  GK++
Sbjct: 242 ICGAISVYNRMDQLPPGPSPESIIYKQLRIEGFIVYRWQGDVREKALRDLMKWVLEGKIQ 301

Query: 357 P---IIDPKGPFPFSQVVEAFSYIETNKATGKVVI 388
               +    G   F  +  AF  +      GK V+
Sbjct: 302 YHEHVTK--G---FENMPAAFIEMLNGANLGKAVV 331

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A* Length = 373

 Score = 61.1 bits (149), Expect = 2e-10
 Identities = 70/291 (24%), Positives = 99/291 (34%), Gaps = 66/291 (22%)

Query: 102 EKVTVPQVKEDQVLIKVVAAAL-----NPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVK 156
           E++ V   K  +V IK++A A+       + G   +G F       P + G+  AG+V  
Sbjct: 22  EEIEVAPPKAHEVRIKIIATAVCHTDAYTLSGADPEGCF-------PVILGHLGAGIVES 74

Query: 157 VGTQVKEFKEGDEV------------------------YGDINEKAL--EGPKQF----- 185
           VG  V + K GD V                              K L  +G  +F     
Sbjct: 75  VGEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKGLMPDGTSRFTCKGK 134

Query: 186 --------GSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLERTG-FSAGKSI 236
                    + +EYT V +  +A         +   L   I T Y     T     G   
Sbjct: 135 TILHYMGTSTFSEYTVVADISVAKIDPLAPLDKVCLLGCGISTGYGAAVNTAKLEPGSVC 194

Query: 237 LVLNGSGGVGSLVIQLAKQVFGASR-VAATSSTRNLEFLKSLGADLAI---DYTKDNFED 292
            V  G GGVG  VI   K   GASR +    +       K  GA   I   D++K   E 
Sbjct: 195 AVF-GLGGVGLAVIMGCKVA-GASRIIGVDINKDKFARAKEFGATECINPQDFSKPIQEV 252

Query: 293 LPEK----FDVVYDAIGQCD---RAVKAIKEGGTVVALTGAVTPPGFRFVV 336
           L E      D  ++ IG       A++A  +G  V  + G V   G     
Sbjct: 253 LIEMTDGGVDYSFECIGNVKVMRAALEACHKGWGVSVVVG-VAASGEEIAT 302

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* Length = 373

 Score = 60.7 bits (148), Expect = 2e-10
 Identities = 61/287 (21%), Positives = 96/287 (33%), Gaps = 70/287 (24%)

Query: 102 EKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQV 161
           E +TV   K  +V IK++A+ +   D    +    +     P + G++  GVV  +G  V
Sbjct: 25  ETITVAPPKAHEVRIKILASGICGSDSSVLKEIIPS---KFPVILGHEAVGVVESIGAGV 81

Query: 162 KEFKEGDEV-----------------------YGDINEKA---LEGPKQF---------- 185
              K GD+V                         D+  K     +   +F          
Sbjct: 82  TCVKPGDKVIPLFVPQCGSCRACKSSNSNFCEKNDMGAKTGLMADMTSRFTCRGKPIYNL 141

Query: 186 ---GSLAEYTAVEERLLAPKPKNLDFVQA-------AGLPLAIETAYEGLERTGFSAGKS 235
               +  EYT V +  +A                   G   A+ TA         + G +
Sbjct: 142 MGTSTFTEYTVVADIAVAKIDPKAPLESCLIGCGFATGYGAAVNTA-------KVTPGST 194

Query: 236 ILVLNGSGGVGSLVIQLAKQVFGASR-VAATSSTRNLEFLKSLGADLAI---DYTKDNFE 291
             V  G GGVG   I   K   GASR +   +          LGA   +   DY K  +E
Sbjct: 195 CAVF-GLGGVGFSAIVGCKAA-GASRIIGVGTHKDKFPKAIELGATECLNPKDYDKPIYE 252

Query: 292 DLPEK----FDVVYDAIGQCD---RAVKAIKEGGTVVALTGAVTPPG 331
            + EK     D   +  G+ +    A+++   G  V  + G +  P 
Sbjct: 253 VICEKTNGGVDYAVECAGRIETMMNALQSTYCGSGVTVVLG-LASPN 298

>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A* Length = 345

 Score = 60.3 bits (147), Expect = 3e-10
 Identities = 69/340 (20%), Positives = 123/340 (36%), Gaps = 78/340 (22%)

Query: 102 EKVTVPQ---VKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVP------GYDVAG 152
              TV        + VL+K +  + +P    R      +T +            GY V  
Sbjct: 26  TTTTVELRVPEGTNSVLVKNLYLSCDPYMRIRMGKPDPSTAALAQAYTPGQPIQGYGV-S 84

Query: 153 VVVKVGTQVKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAA 212
            +++  +   ++K+GD ++G              +  EY+     ++ P       +Q  
Sbjct: 85  RIIE--SGHPDYKKGDLLWG------------IVAWEEYS-----VITPMTHAHFKIQHT 125

Query: 213 GLPLAI---------ETAYEGLERTG-FSAGKSILVLNGSGGVGSLVIQLAKQVFGASRV 262
            +PL+           TAY G         G+++ V   SG VG LV QLAK + G   V
Sbjct: 126 DVPLSYYTGLLGMPGMTAYAGFYEVCSPKEGETVYVSAASGAVGQLVGQLAK-MMGCYVV 184

Query: 263 AATSSTRNLEFLKS-LGADLAIDY-TKDNFEDL-----PEKFDVVYDAIG--QCDRAVKA 313
            +  S   ++ LK+  G D A +Y  + +         P   D+ ++ +G    D  +  
Sbjct: 185 GSAGSKEKVDLLKTKFGFDDAFNYKEESDLTAALKRCFPNGIDIYFENVGGKMLDAVLVN 244

Query: 314 IKEGGTVVALTGAV------TPPGFR--------------FVVTS----NGEVLKKLNPY 349
           +   G  +A+ G +         G                FVV+       + L+ + P+
Sbjct: 245 MNMHGR-IAVCGMISQYNLENQEGVHNLSNIIYKRNRIQGFVVSDFYDKYSKFLEFVLPH 303

Query: 350 LESGKVKPIID-PKGPFPFSQVVEAFSYIETNKATGKVVI 388
           +  GK+  + D   G     +  EA   +   K  GK V+
Sbjct: 304 IREGKITYVEDVADG---LEKAPEALVGLFHGKNVGKQVV 340

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ... Length = 374

 Score = 59.1 bits (144), Expect = 7e-10
 Identities = 65/281 (23%), Positives = 101/281 (35%), Gaps = 57/281 (20%)

Query: 102 EKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQV 161
           E+V V   K  +V IK+VA  +   D     G       PLP + G++ AG+V  +G  V
Sbjct: 24  EEVEVAPPKAHEVRIKMVATGICRSDDHVVSGTLVT---PLPVIAGHEAAGIVESIGEGV 80

Query: 162 KEFKEGDEV-----------------------YGDINEKA---LEGPKQF---------- 185
              + GD+V                         D++       +G  +F          
Sbjct: 81  TTVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLKNDLSMPRGTMQDGTSRFTCRGKPIHHF 140

Query: 186 ---GSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLERTG-FSAGKSILVLNG 241
               + ++YT V+E  +A         +   +     T Y    +    + G +  V  G
Sbjct: 141 LGTSTFSQYTVVDEISVAKIDAASPLEKVCLIGCGFSTGYGSAVKVAKVTQGSTCAVF-G 199

Query: 242 SGGVGSLVIQLAKQVFGASR-VAATSSTRNLEFLKSLGADLAI---DYTKDNFEDLPEK- 296
            GGVG  VI   K   GA+R +    +       K +GA   +   DY K   E L E  
Sbjct: 200 LGGVGLSVIMGCKAA-GAARIIGVDINKDKFAKAKEVGATECVNPQDYKKPIQEVLTEMS 258

Query: 297 ---FDVVYDAIGQCD---RAVKAIKEGGTVVALTGAVTPPG 331
               D  ++ IG+ D    A+   +E   V  + G V P  
Sbjct: 259 NGGVDFSFEVIGRLDTMVTALSCCQEAYGVSVIVG-VPPDS 298

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1 Length = 398

 Score = 58.8 bits (143), Expect = 8e-10
 Identities = 66/415 (15%), Positives = 118/415 (28%), Gaps = 130/415 (31%)

Query: 82  SEMKAWLYGEYGGVDVLKFDEKVTVPQVKE-------DQVLIKVVAAA-----LNPVDGK 129
           S  +  +Y   G V+V    +K+  P++++         V++KVV+        + V G+
Sbjct: 1   SGNRGVVYLGSGKVEV----QKIDYPKMQDPRGKKIEHGVILKVVSTNICGSDQHMVRGR 56

Query: 130 RRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKEFKEGDEV------------------Y 171
                   T + +  V G+++ G V++ G  V+  + GD V                   
Sbjct: 57  --------TTAQVGLVLGHEITGEVIEKGRDVENLQIGDLVSVPFNVACGRCRSCKEMHT 108

Query: 172 G------DINEKALEGPKQFGSL----AEY--------TAVEERLLAPKPKNLDFVQAAG 213
           G              G    G      AEY          ++     P            
Sbjct: 109 GVCLTVNPARAGGAYGYVDMGDWTGGQAEYVLVPYADFNLLK----LPDRDKAMEKIRDL 164

Query: 214 LPLA--IETAYEGLERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRN- 270
             L+  + T Y G    G   G ++ V  G+G VG      A+   GA+ V         
Sbjct: 165 TCLSDILPTGYHGAVTAGVGPGSTVYVA-GAGPVGLAAAASARL-LGAAVVIVGDLNPAR 222

Query: 271 LEFLKSLGADLAIDYTKDNFEDLPEKF---------DVVYDAIG------------QCDR 309
           L   K+ G +   D + D    L E+          D   DA+G                
Sbjct: 223 LAHAKAQGFE-IADLSLD--TPLHEQIAALLGEPEVDCAVDAVGFEARGHGHEGAKHEAP 279

Query: 310 ------AVKAIKEGGTVVALTG--AVTPPGFRFVVTSNGEV------------------- 342
                  ++  +  G  + + G      PG        G +                   
Sbjct: 280 ATVLNSLMQVTRVAGK-IGIPGLYVTEDPGAVDAAAKIGSLSIRFGLGWAKSHSFHTGQT 338

Query: 343 -----LKKLNPYLESGKVKP--IIDPKGPFPFSQVVEAFSYIETNKATGKVVIHP 390
                 + L   +   ++    ++  +           +   +      K VI P
Sbjct: 339 PVMKYNRALMQAIMWDRINIAEVVGVQ-VISLDDAPRGYGEFDAGVPK-KFVIDP 391

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1 Length = 374

 Score = 56.9 bits (138), Expect = 4e-09
 Identities = 57/302 (18%), Positives = 100/302 (33%), Gaps = 69/302 (22%)

Query: 102 EKVTVPQVKEDQVLIKVVAAAL-----NPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVK 156
           E++ V     +++ IK++A  +       +   + +  F       P V G++ AG+V  
Sbjct: 24  EEIEVDVPHANEIRIKIIATGVCHTDLYHLFEGKHKDGF-------PVVLGHEGAGIVES 76

Query: 157 VGTQVKEFKEGDEV-----------------------YGDINEKA---LEGPKQF----- 185
           VG  V EF+ G++V                        G  NE          +F     
Sbjct: 77  VGPGVTEFQPGEKVIPLFISQCGECRFCQSPKTNQCVKGWANESPDVMSPKETRFTCKGR 136

Query: 186 --------GSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLERT-GFSAGKSI 236
                    + ++YT V +  +A    +        L   + T +     T     G + 
Sbjct: 137 KVLQFLGTSTFSQYTVVNQIAVAKIDPSAPLDTVCLLGCGVSTGFGAAVNTAKVEPGSTC 196

Query: 237 LVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRN-LEFLKSLGADLAI---DYTKDNFED 292
            V  G G VG   +       GA R+ A     +  E  K  GA   +   D+++   + 
Sbjct: 197 AVF-GLGAVGLAAVMGCHSA-GAKRIIAVDLNPDKFEKAKVFGATDFVNPNDHSEPISQV 254

Query: 293 LPEK----FDVVYDAIGQCD---RAVKAIKEGGTVVALTGAVTPPG---FRFVVTSNGEV 342
           L +      D   + +G       A+++  +G  V  L G  T       R +    G  
Sbjct: 255 LSKMTNGGVDFSLECVGNVGVMRNALESCLKGWGVSVLVG-WTDLHDVATRPIQLIAGRT 313

Query: 343 LK 344
            K
Sbjct: 314 WK 315

>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A* Length = 357

 Score = 56.1 bits (136), Expect = 6e-09
 Identities = 68/340 (20%), Positives = 124/340 (36%), Gaps = 75/340 (22%)

Query: 102 EKVTVPQ-VKEDQVLIKVVAAALNP-VDGKRRQGKFKATDSPLP---TVPGYDVAGVVVK 156
           E+V +P  + E QV ++ +  +++P +  +  +       +P      V G  + G++ +
Sbjct: 32  EEVYLPDNINEGQVQVRTLYLSVDPYMRCRMNEDTGTDYITPWQLSQVVDGGGI-GIIEE 90

Query: 157 VGTQVKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNL------DFVQ 210
             ++     +GD V              +        ++   L      L       F+ 
Sbjct: 91  --SKHTNLTKGDFVTS-----------FYWPWQTKVILDGNSLEKVDPQLVDGHLSYFLG 137

Query: 211 AAGLP-LAIETAYEGLERTG-FSAGKS--ILVLNGSGGVGSLVIQLAKQVFGASRV-AAT 265
           A G+P L   T+  G++  G  +AG +  ++V   +G  GS+  Q+     G SRV    
Sbjct: 138 AIGMPGL---TSLIGIQEKGHITAGSNKTMVVSGAAGACGSVAGQIGH-FLGCSRVVGIC 193

Query: 266 SSTRNLEFLKS-LGADLAIDYTKDNFED-----LPEKFDVVYDAIG--QCDRAVKAIKEG 317
            +      L S LG D AI+Y KDN  +      P   DV +D +G    D  +  + E 
Sbjct: 194 GTHEKCILLTSELGFDAAINYKKDNVAEQLRESCPAGVDVYFDNVGGNISDTVISQMNEN 253

Query: 318 GTVVALTGAV----------TPPGFR--------------FVVTS----NGEVLKKLNPY 349
              + L G +           P                  F+V +        + +L+ +
Sbjct: 254 SH-IILCGQISQYNKDVPYPPPLSPAIEAIQKERNITRERFLVLNYKDKFEPGILQLSQW 312

Query: 350 LESGKVKPIID-PKGPFPFSQVVEAFSYIETNKATGKVVI 388
            + GK+K       G      +  AF  + T    GK ++
Sbjct: 313 FKEGKLKIKETVING---LENMGAAFQSMMTGGNIGKQIV 349

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* Length = 376

 Score = 51.5 bits (124), Expect = 2e-07
 Identities = 26/69 (37%), Positives = 36/69 (52%), Gaps = 3/69 (4%)

Query: 102 EKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQV 161
           E++ V   K  +V I+V+A  + P D      K KA     P V G++ AG+V  VG  V
Sbjct: 24  EEIEVSPPKACEVRIQVIATCVCPTDINATDPKKKA---LFPVVLGHECAGIVESVGPGV 80

Query: 162 KEFKEGDEV 170
             FK GD+V
Sbjct: 81  TNFKPGDKV 89

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	392
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	100.0
3tqh_A	321	Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella	100.0
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	100.0
3gms_A	340	Putative NADPH:quinone reductase; structural genom	100.0
4eye_A	342	Probable oxidoreductase; structural genomics, niai	100.0
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	100.0
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	100.0
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	100.0
4eez_A	348	Alcohol dehydrogenase 1; site-saturation mutagenes	100.0
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	100.0
3gaz_A	343	Alcohol dehydrogenase superfamily protein; oxidore	100.0
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	100.0
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	100.0
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	100.0
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	100.0
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	100.0
3gqv_A	371	Enoyl reductase; medium-chain reductase (MDR super	100.0
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	100.0
1zsy_A	357	Mitochondrial 2-enoyl thioester reductase; medium-	100.0
4a27_A	349	Synaptic vesicle membrane protein VAT-1 homolog-L;	100.0
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	100.0
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	100.0
3pi7_A	349	NADH oxidoreductase; groes-like fold, NAD(P)-bindi	100.0
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	100.0
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	100.0
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	100.0
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	100.0
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	100.0
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	100.0
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	100.0
1h2b_A	359	Alcohol dehydrogenase; oxidoreductase, archaea, hy	100.0
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	100.0
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	100.0
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	100.0
3nx4_A	324	Putative oxidoreductase; csgid, structural genomic	100.0
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	100.0
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	100.0
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	100.0
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	100.0
2vn8_A	375	Reticulon-4-interacting protein 1; mitochondrion,	100.0
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	100.0
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	100.0
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	100.0
3krt_A	456	Crotonyl COA reductase; structural genomics, prote	100.0
4a0s_A	447	Octenoyl-COA reductase/carboxylase; oxidoreductase	100.0
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	100.0
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	100.0
1gu7_A	364	Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s	100.0
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	100.0
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	100.0
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	100.0
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	100.0
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	100.0
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	100.0
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	100.0
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	100.0
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	100.0
1tt7_A	330	YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st	100.0
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	100.0
1xa0_A	328	Putative NADPH dependent oxidoreductases; structur	100.0
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	100.0
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	100.0
2zb4_A	357	Prostaglandin reductase 2; rossmann fold, alternat	100.0
3iup_A	379	Putative NADPH:quinone oxidoreductase; YP_296108.1	100.0
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	100.0
3slk_A	795	Polyketide synthase extender module 2; rossmann fo	100.0
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	100.0
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	100.0
2j3h_A	345	NADP-dependent oxidoreductase P1; double bond redu	100.0
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	100.0
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	99.82
1gpj_A	404	Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro	98.87
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	98.55
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	98.51
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	98.41
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	98.37
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	98.34
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	98.3
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	98.28
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	98.01
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	98.0
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	97.93
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	97.89
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	97.8
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	97.76
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	97.73
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	97.71
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	97.64
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	97.62
3n58_A	464	Adenosylhomocysteinase; ssgcid, hydrolase, structu	97.55
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	97.53
4fgs_A	273	Probable dehydrogenase protein; PSI-biology, nysgr	97.48
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	97.48
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	97.42
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	97.37
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	97.37
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	97.33
3c85_A	183	Putative glutathione-regulated potassium-efflux S	97.3
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	97.23
4eso_A	255	Putative oxidoreductase; NADP, structural genomics	97.23
4g81_D	255	Putative hexonate dehydrogenase; enzyme function i	97.2
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	97.2
3ged_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	97.17
4fs3_A	256	Enoyl-[acyl-carrier-protein] reductase [NADPH] FA;	97.16
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	97.16
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	97.15
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	97.14
4hp8_A	247	2-deoxy-D-gluconate 3-dehydrogenase; enzyme functi	97.14
3h9u_A	436	Adenosylhomocysteinase; NAD CO-factor complex, str	97.13
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	97.11
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	97.11
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	97.11
4fn4_A	254	Short chain dehydrogenase; NADH-binding, rossmann	97.11
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	97.07
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	97.07
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	97.03
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	97.03
3dii_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	97.02
1g0o_A	283	Trihydroxynaphthalene reductase; protein-NADPH-act	96.98
2a4k_A	263	3-oxoacyl-[acyl carrier protein] reductase; reduct	96.97
4b79_A	242	PA4098, probable short-chain dehydrogenase; oxidor	96.96
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	96.95
4e6p_A	259	Probable sorbitol dehydrogenase (L-iditol 2-dehyd;	96.91
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	96.9
4gkb_A	258	3-oxoacyl-[acyl-carrier protein] reductase; putati	96.9
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	96.89
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	96.89
3is3_A	270	17BETA-hydroxysteroid dehydrogenase; short chain d	96.89
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	96.89
3rkr_A	262	Short chain oxidoreductase; rossmann fold; HET: NA	96.88
3f1l_A	252	Uncharacterized oxidoreductase YCIK; E. coli, NADP	96.88
3gem_A	260	Short chain dehydrogenase; structural genomics, AP	96.87
3o26_A	311	Salutaridine reductase; short chain dehydrogenase/	96.84
3gvc_A	277	Oxidoreductase, probable short-chain type dehydrog	96.84
4dqx_A	277	Probable oxidoreductase protein; structural genomi	96.83
3u5t_A	267	3-oxoacyl-[acyl-carrier-protein] reductase; struct	96.83
3tfo_A	264	Putative 3-oxoacyl-(acyl-carrier-protein) reducta;	96.83
3v2g_A	271	3-oxoacyl-[acyl-carrier-protein] reductase; struct	96.83
1xg5_A	279	ARPG836; short chain dehydrogenase, human, SGC, st	96.82
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	96.8
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	96.8
3k31_A	296	Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI	96.79
3tjr_A	301	Short chain dehydrogenase; structural genomics, se	96.76
3grk_A	293	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	96.74
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	96.73
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	96.73
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	96.71
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	96.71
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	96.69
3op4_A	248	3-oxoacyl-[acyl-carrier protein] reductase; 3-keto	96.68
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	96.68
3grp_A	266	3-oxoacyl-(acyl carrierprotein) reductase; structu	96.67
3d3w_A	244	L-xylulose reductase; uronate cycle, short-chain d	96.67
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	96.66
4imr_A	275	3-oxoacyl-(acyl-carrier-protein) reductase; oxidor	96.66
1wwk_A	307	Phosphoglycerate dehydrogenase; riken structural g	96.65
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	96.64
3t4x_A	267	Oxidoreductase, short chain dehydrogenase/reducta;	96.64
2pd4_A	275	Enoyl-[acyl-carrier-protein] reductase [NADH]; ant	96.62
3qvo_A	236	NMRA family protein; structural genomics, PSI-biol	96.62
3ftp_A	270	3-oxoacyl-[acyl-carrier protein] reductase; ssgcid	96.62
3kvo_A	346	Hydroxysteroid dehydrogenase-like protein 2; HSDL2	96.61
3ksu_A	262	3-oxoacyl-acyl carrier protein reductase; structur	96.61
3ioy_A	319	Short-chain dehydrogenase/reductase SDR; structura	96.61
1wma_A	276	Carbonyl reductase [NADPH] 1; oxidoreductase; HET:	96.6
3r3s_A	294	Oxidoreductase; structural genomics, csgid, center	96.59
2gdz_A	267	NAD+-dependent 15-hydroxyprostaglandin dehydrogen;	96.58
4egf_A	266	L-xylulose reductase; structural genomics, ssgcid,	96.58
3nyw_A	250	Putative oxidoreductase; fatty acid synthesis,3-ox	96.58
3dqp_A	219	Oxidoreductase YLBE; alpha-beta protein., structur	96.56
3edm_A	259	Short chain dehydrogenase; structural genomics, ox	96.56
3oig_A	266	Enoyl-[acyl-carrier-protein] reductase [NADH]; fat	96.56
3orf_A	251	Dihydropteridine reductase; alpha-beta-alpha sandw	96.55
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	96.54
3d64_A	494	Adenosylhomocysteinase; structural genomics, ssgci	96.53
1v8b_A	479	Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2	96.53
3jtm_A	351	Formate dehydrogenase, mitochondrial; mitochondrio	96.52
3oid_A	258	Enoyl-[acyl-carrier-protein] reductase [NADPH]; fa	96.51
3e48_A	289	Putative nucleoside-diphosphate-sugar epimerase; a	96.51
2d1y_A	256	Hypothetical protein TT0321; strucrtural genomics,	96.49
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	96.48
4dmm_A	269	3-oxoacyl-[acyl-carrier-protein] reductase; rossma	96.48
3pgx_A	280	Carveol dehydrogenase; structural genomics, seattl	96.47
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	96.46
2ag5_A	246	DHRS6, dehydrogenase/reductase (SDR family) member	96.45
3sx2_A	278	Putative 3-ketoacyl-(acyl-carrier-protein) reduct;	96.44
2g76_A	335	3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor	96.44
3e03_A	274	Short chain dehydrogenase; structural genomics, PS	96.44
1ja9_A	274	4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p	96.44
1uls_A	245	Putative 3-oxoacyl-acyl carrier protein reductase;	96.42
1c1d_A	355	L-phenylalanine dehydrogenase; amino acid dehydrog	96.42
3f9i_A	249	3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto	96.41
3rwb_A	247	TPLDH, pyridoxal 4-dehydrogenase; short chain dehy	96.38
3tsc_A	277	Putative oxidoreductase; structural genomics, seat	96.36
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	96.36
2bka_A	242	CC3, TAT-interacting protein TIP30; NADPH, PEG600,	96.35
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	96.35
3r1i_A	276	Short-chain type dehydrogenase/reductase; structur	96.33
1ooe_A	236	Dihydropteridine reductase; structural genomics, P	96.32
3imf_A	257	Short chain dehydrogenase; structural genomics, in	96.31
2j6i_A	364	Formate dehydrogenase; oxidoreductase, D-specific-	96.3
3rih_A	293	Short chain dehydrogenase or reductase; structural	96.3
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	96.3
1cyd_A	244	Carbonyl reductase; short-chain dehydrogenase, oxi	96.29
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	96.29
3pk0_A	262	Short-chain dehydrogenase/reductase SDR; ssgcid, s	96.29
2b25_A	336	Hypothetical protein; structural genomics, methyl	96.28
2dtx_A	264	Glucose 1-dehydrogenase related protein; rossmann	96.26
2rhc_B	277	Actinorhodin polyketide ketoreductase; oxidoreduct	96.25
1yde_A	270	Retinal dehydrogenase/reductase 3; oxidoreductase,	96.25
3rd5_A	291	Mypaa.01249.C; ssgcid, structural genomics, seattl	96.24
2jah_A	247	Clavulanic acid dehydrogenase; short-chain dehydro	96.23
1sby_A	254	Alcohol dehydrogenase; ternary complex, NAD, trifl	96.23
3v8b_A	283	Putative dehydrogenase, possibly 3-oxoacyl-[acyl-	96.23
1iy8_A	267	Levodione reductase; oxidoreductase; HET: NAD; 1.6	96.23
2nac_A	393	NAD-dependent formate dehydrogenase; oxidoreductas	96.22
3ucx_A	264	Short chain dehydrogenase; ssgcid, seattle structu	96.22
3ai3_A	263	NADPH-sorbose reductase; rossmann-fold, NADPH-depe	96.21
3l77_A	235	Short-chain alcohol dehydrogenase; oxidoreductase;	96.21
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	96.21
1dhr_A	241	Dihydropteridine reductase; oxidoreductase(acting	96.21
3qiv_A	253	Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR	96.2
4dyv_A	272	Short-chain dehydrogenase/reductase SDR; structura	96.2
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	96.2
2ekl_A	313	D-3-phosphoglycerate dehydrogenase; structural gen	96.2
3zv4_A	281	CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; ox	96.19
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	96.19
3h7a_A	252	Short chain dehydrogenase; oxidoreductase, PSI-2,	96.19
1gee_A	261	Glucose 1-dehydrogenase; short-chain dehydrogenase	96.19
3i1j_A	247	Oxidoreductase, short chain dehydrogenase/reducta;	96.18
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	96.18
3gaf_A	256	7-alpha-hydroxysteroid dehydrogenase; seattle stru	96.17
2wsb_A	254	Galactitol dehydrogenase; oxidoreductase, SDR, ros	96.17
3tzq_B	271	Short-chain type dehydrogenase/reductase; ssgcid,	96.17
1hdc_A	254	3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxi	96.17
1ae1_A	273	Tropinone reductase-I; oxidoreductase, tropane alk	96.16
4dry_A	281	3-oxoacyl-[acyl-carrier-protein] reductase; struct	96.16
1xxl_A	239	YCGJ protein; structural genomics, protein structu	96.16
2z1n_A	260	Dehydrogenase; reductase, SDR, oxidoreductase; 1.8	96.15
3l6e_A	235	Oxidoreductase, short-chain dehydrogenase/reducta;	96.15
2ekp_A	239	2-deoxy-D-gluconate 3-dehydrogenase; structural ge	96.14
2ew8_A	249	(S)-1-phenylethanol dehydrogenase; transferase; 2.	96.14
2o23_A	265	HADH2 protein; HSD17B10, schad, ERAB, type II HADH	96.12
2b4q_A	276	Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier	96.11
1y1p_A	342	ARII, aldehyde reductase II; rossmann fold, short	96.11
3lyl_A	247	3-oxoacyl-(acyl-carrier-protein) reductase; alpha	96.11
2ae2_A	260	Protein (tropinone reductase-II); oxidoreductase,	96.11
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	96.11
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	96.1
3m1a_A	281	Putative dehydrogenase; short, PSI, MCSG, structur	96.08
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	96.08
1zmo_A	244	Halohydrin dehalogenase; haloalcohol dehalogenase,	96.07
3ek2_A	271	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	96.07
1geg_A	256	Acetoin reductase; SDR family, oxidoreductase; HET	96.07
1o5i_A	249	3-oxoacyl-(acyl carrier protein) reductase; TM1169	96.06
3ak4_A	263	NADH-dependent quinuclidinone reductase; SDR, (R)-	96.06
3lf2_A	265	Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross	96.06
3cea_A	346	MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore	96.05
3n74_A	261	3-ketoacyl-(acyl-carrier-protein) reductase; seatt	96.05
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	96.04
2ehd_A	234	Oxidoreductase, oxidoreductase, short-chain dehydr	96.04
3sju_A	279	Keto reductase; short-chain dehydrogenase, oxidore	96.04
3cxt_A	291	Dehydrogenase with different specificities; rossma	96.03
1yb1_A	272	17-beta-hydroxysteroid dehydrogenase type XI; shor	96.03
1vl8_A	267	Gluconate 5-dehydrogenase; TM0441, structural geno	96.03
3tpc_A	257	Short chain alcohol dehydrogenase-related dehydro;	96.03
1zmt_A	254	Haloalcohol dehalogenase HHEC; halohydrin dehaloge	96.03
3ruf_A	351	WBGU; rossmann fold, UDP-hexose 4-epimerase, isome	96.02
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	96.02
1fjh_A	257	3alpha-hydroxysteroid dehydrogenase/carbonyl reduc	95.98
1hxh_A	253	3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-b	95.97
1zem_A	262	Xylitol dehydrogenase; rossmann fold, dinucleotide	95.97
1xq6_A	253	Unknown protein; structural genomics, protein stru	95.97
3uf0_A	273	Short-chain dehydrogenase/reductase SDR; gluconate	95.96
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	95.95
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	95.95
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	95.95
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	95.94
1w6u_A	302	2,4-dienoyl-COA reductase, mitochondrial precursor	95.94
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	95.94
3tox_A	280	Short chain dehydrogenase; structural genomics, PS	95.94
2uvd_A	246	3-oxoacyl-(acyl-carrier-protein) reductase; beta-k	95.93
3p19_A	266	BFPVVD8, putative blue fluorescent protein; rossma	95.93
2pnf_A	248	3-oxoacyl-[acyl-carrier-protein] reductase; short	95.93
3oml_A	613	GH14720P, peroxisomal multifunctional enzyme type	95.93
4ibo_A	271	Gluconate dehydrogenase; enzyme function initiativ	95.92
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	95.92
3f4k_A	257	Putative methyltransferase; structural genomics, P	95.92
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	95.91
3gg9_A	352	D-3-phosphoglycerate dehydrogenase oxidoreductase;	95.91
1nff_A	260	Putative oxidoreductase RV2002; directed evolution	95.89
3abi_A	365	Putative uncharacterized protein PH1688; L-lysine	95.88
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	95.87
1gdh_A	320	D-glycerate dehydrogenase; oxidoreductase(CHOH (D)	95.87
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	95.86
1zk4_A	251	R-specific alcohol dehydrogenase; short chain redu	95.86
2pd6_A	264	Estradiol 17-beta-dehydrogenase 8; short-chain deh	95.85
3awd_A	260	GOX2181, putative polyol dehydrogenase; oxidoreduc	95.85
3guy_A	230	Short-chain dehydrogenase/reductase SDR; structura	95.85
2w2k_A	348	D-mandelate dehydrogenase; 2-hydroxyacid dehydroge	95.83
3v2h_A	281	D-beta-hydroxybutyrate dehydrogenase; structural g	95.82
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	95.81
3afn_B	258	Carbonyl reductase; alpha/beta/alpha, rossmann-fol	95.81
3uce_A	223	Dehydrogenase; rossmann fold, oxidoreductase; HET:	95.81
2jl1_A	287	Triphenylmethane reductase; oxidoreductase, biorem	95.8
1fmc_A	255	7 alpha-hydroxysteroid dehydrogenase; short-chain	95.8
2zat_A	260	Dehydrogenase/reductase SDR family member 4; alpha	95.79
1mxh_A	276	Pteridine reductase 2; SDR topology, protein-subst	95.79
4hy3_A	365	Phosphoglycerate oxidoreductase; PSI-biology, stru	95.77
1x1t_A	260	D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, S	95.77
3svt_A	281	Short-chain type dehydrogenase/reductase; ssgcid,	95.77
1qsg_A	265	Enoyl-[acyl-carrier-protein] reductase; enoyl redu	95.76
4h15_A	261	Short chain alcohol dehydrogenase-related dehydro;	95.76
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	95.76
3rku_A	287	Oxidoreductase YMR226C; substrate fingerprint, sho	95.75
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	95.74
3asu_A	248	Short-chain dehydrogenase/reductase SDR; SDR famil	95.73
3a28_C	258	L-2.3-butanediol dehydrogenase; chiral substrate r	95.73
3e9n_A	245	Putative short-chain dehydrogenase/reductase; stru	95.72
3l07_A	285	Bifunctional protein fold; structural genomics, ID	95.72
1yo6_A	250	Putative carbonyl reductase sniffer; tyrosine-depe	95.72
4e5n_A	330	Thermostable phosphite dehydrogenase; D-2-hydroxya	95.7
4fc7_A	277	Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman	95.7
2wyu_A	261	Enoyl-[acyl carrier protein] reductase; oxidoreduc	95.69
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	95.69
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	95.67
3s55_A	281	Putative short-chain dehydrogenase/reductase; stru	95.66
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	95.65
3ngx_A	276	Bifunctional protein fold; methylenetetrahydrofola	95.65
1xkq_A	280	Short-chain reductase family member (5D234); parra	95.64
1sny_A	267	Sniffer CG10964-PA; alpha and beta protein, rossma	95.64
1spx_A	278	Short-chain reductase family member (5L265); paral	95.64
3sc4_A	285	Short chain dehydrogenase (A0QTM2 homolog); ssgcid	95.63
3vtz_A	269	Glucose 1-dehydrogenase; rossmann fold, oxidoreduc	95.63
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	95.62
1yxm_A	303	Pecra, peroxisomal trans 2-enoyl COA reductase; pe	95.62
1xq1_A	266	Putative tropinone reducatse; structural genomics,	95.62
3uve_A	286	Carveol dehydrogenase ((+)-trans-carveol dehydrog;	95.61
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	95.6
3o8q_A	281	Shikimate 5-dehydrogenase I alpha; structural geno	95.6
3p2o_A	285	Bifunctional protein fold; structural genomics, ce	95.6
2p91_A	285	Enoyl-[acyl-carrier-protein] reductase [NADH]; NAD	95.6
3t7c_A	299	Carveol dehydrogenase; structural genomics, seattl	95.59
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	95.59
2c07_A	285	3-oxoacyl-(acyl-carrier protein) reductase; oxidor	95.59
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	95.59
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	95.59
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	95.57
2q2v_A	255	Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidore	95.56
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	95.56
4a5o_A	286	Bifunctional protein fold; oxidoreductase, hydrola	95.56
2gn4_A	344	FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann	95.55
3tum_A	269	Shikimate dehydrogenase family protein; rossmann-f	95.55
3i9f_A	170	Putative type 11 methyltransferase; structural gen	95.55
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	95.55
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	95.54
1xhl_A	297	Short-chain dehydrogenase/reductase family member	95.54
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	95.53
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	95.53
4iin_A	271	3-ketoacyl-acyl carrier protein reductase (FABG);	95.52
4da9_A	280	Short-chain dehydrogenase/reductase; structural ge	95.51
2cfc_A	250	2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidor	95.51
1gz6_A	319	Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MF	95.49
3pwz_A	272	Shikimate dehydrogenase 3; alpha-beta, oxidoreduct	95.47
2fwm_X	250	2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; e	95.47
2nwq_A	272	Probable short-chain dehydrogenase; oxidoreductase	95.46
3icc_A	255	Putative 3-oxoacyl-(acyl carrier protein) reducta;	95.45
2bgk_A	278	Rhizome secoisolariciresinol dehydrogenase; oxidor	95.45
2hq1_A	247	Glucose/ribitol dehydrogenase; CTH-1438, structura	95.42
3nrc_A	280	Enoyl-[acyl-carrier-protein] reductase (NADH); ros	95.42
2bd0_A	244	Sepiapterin reductase; oxidoreductase; HET: NAP BI	95.42
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	95.41
2nm0_A	253	Probable 3-oxacyl-(acyl-carrier-protein) reductas;	95.4
2et6_A	604	(3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-ox	95.4
2x9g_A	288	PTR1, pteridine reductase; short chain dehydrogena	95.38
3s8m_A	422	Enoyl-ACP reductase; rossmann fold, oxidoreductase	95.37
4g2n_A	345	D-isomer specific 2-hydroxyacid dehydrogenase, Na;	95.35
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	95.35
3m2p_A	311	UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J	95.34
1xgk_A	352	Nitrogen metabolite repression regulator NMRA; ros	95.34
3qlj_A	322	Short chain dehydrogenase; structural genomics, se	95.34
2z2v_A	365	Hypothetical protein PH1688; L-lysine dehydrogenas	95.34
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	95.33
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	95.33
1a4i_A	301	Methylenetetrahydrofolate dehydrogenase / methenyl	95.32
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	95.32
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	95.32
1e7w_A	291	Pteridine reductase; dihydrofolate reductase, shor	95.31
4hg2_A	257	Methyltransferase type 11; structural genomics, PS	95.3
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	95.3
2wm3_A	299	NMRA-like family domain containing protein 1; unkn	95.28
3oec_A	317	Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO;	95.27
2x4g_A	342	Nucleoside-diphosphate-sugar epimerase; isomerase;	95.26
3ctm_A	279	Carbonyl reductase; alcohol dehydrogenase, short-c	95.26
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	95.26
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	95.25
2zcu_A	286	Uncharacterized oxidoreductase YTFG; alpha-beta sa	95.24
2gas_A	307	Isoflavone reductase; NADPH-dependent reductase, o	95.21
2qhx_A	328	Pteridine reductase 1; oxidoreductase, short-chain	95.15
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	95.15
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	95.14
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	95.12
3ezl_A	256	Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA	95.11
3tl3_A	257	Short-chain type dehydrogenase/reductase; ssgcid,	95.11
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	95.08
2d0i_A	333	Dehydrogenase; structural genomics, NPPSFA, nation	95.08
1nt2_A	210	Fibrillarin-like PRE-rRNA processing protein; adeM	95.07
4a26_A	300	Putative C-1-tetrahydrofolate synthase, cytoplasm;	95.06
4e3z_A	272	Putative oxidoreductase protein; PSI-biology, stru	95.03
3i6i_A	346	Putative leucoanthocyanidin reductase 1; rossmann	95.02
1j4a_A	333	D-LDH, D-lactate dehydrogenase; NAD-dependent dehy	95.02
1mx3_A	347	CTBP1, C-terminal binding protein 1; nuclear prote	95.02
1h5q_A	265	NADP-dependent mannitol dehydrogenase; oxidoreduct	95.02
3c1o_A	321	Eugenol synthase; phenylpropene, PIP reductase, sh	95.01
1npy_A	271	Hypothetical shikimate 5-dehydrogenase-like protei	94.99
1edo_A	244	Beta-keto acyl carrier protein reductase; nucleoti	94.97
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	94.96
1nvm_B	312	Acetaldehyde dehydrogenase (acylating), 4-hydroxy-	94.96
3osu_A	246	3-oxoacyl-[acyl-carrier-protein] reductase; struct	94.94
3ko8_A	312	NAD-dependent epimerase/dehydratase; isomerase, UD	94.93
3u9l_A	324	3-oxoacyl-[acyl-carrier-protein] reductase; struct	94.91
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	94.91
2r6j_A	318	Eugenol synthase 1; phenylpropene, PIP reductase,	94.91
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	94.9
3un1_A	260	Probable oxidoreductase; structural genomics, PSI-	94.88
2h7i_A	269	Enoyl-[acyl-carrier-protein] reductase [NADH]; oxi	94.87
3u0b_A	454	Oxidoreductase, short chain dehydrogenase/reducta	94.87
2ph3_A	245	3-oxoacyl-[acyl carrier protein] reductase; TTHA04	94.86
3kzv_A	254	Uncharacterized oxidoreductase YIR035C; cytoplasmi	94.84
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	94.84
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	94.83
4hc4_A	376	Protein arginine N-methyltransferase 6; HRMT1L6, S	94.83
3zu3_A	405	Putative reductase YPO4104/Y4119/YP_4011; oxidored	94.83
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	94.82
1u8f_O	335	GAPDH, glyceraldehyde-3-phosphate dehydrogenase, l	94.81
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	94.81
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	94.8
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	94.79
1leh_A	364	Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi	94.78
4e4y_A	244	Short chain dehydrogenase family protein; structur	94.76
3t4e_A	312	Quinate/shikimate dehydrogenase; structural genomi	94.75
3ppi_A	281	3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de	94.74
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	94.72
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	94.71
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	94.71
2glx_A	332	1,5-anhydro-D-fructose reductase; NADP(H) dependen	94.68
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	94.68
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	94.66
3sxp_A	362	ADP-L-glycero-D-mannoheptose-6-epimerase; rossman	94.65
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	94.64
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	94.63
3rft_A	267	Uronate dehydrogenase; apoenzyme, rossmann fold, N	94.63
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	94.59
1b0a_A	288	Protein (fold bifunctional protein); folate, dehyd	94.58
2d5c_A	263	AROE, shikimate 5-dehydrogenase; substrate, dimer,	94.57
2et6_A	604	(3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-ox	94.56
1xu9_A	286	Corticosteroid 11-beta-dehydrogenase, isozyme 1; h	94.56
1id1_A	153	Putative potassium channel protein; RCK domain, E.	94.55
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	94.53
2c2x_A	281	Methylenetetrahydrofolate dehydrogenase- methenylt	94.53
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	94.52
4id9_A	347	Short-chain dehydrogenase/reductase; putative dehy	94.51
2frx_A	479	Hypothetical protein YEBU; rossmann-type S-adenosy	94.5
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	94.48
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	94.47
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	94.45
3gk3_A	269	Acetoacetyl-COA reductase; acetoacetyl-CO reductas	94.44
3gvx_A	290	Glycerate dehydrogenase related protein; NYSGXRC,	94.44
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	94.41
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	94.38
3evt_A	324	Phosphoglycerate dehydrogenase; structural genomic	94.38
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	94.37
2axq_A	467	Saccharopine dehydrogenase; rossmann fold variant,	94.36
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	94.36
1qyc_A	308	Phenylcoumaran benzylic ether reductase PT1; NADPH	94.34
3slg_A	372	PBGP3 protein; structural genomics, seattle struct	94.33
2c29_D	337	Dihydroflavonol 4-reductase; flavonoids, short deh	94.33
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	94.33
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	94.33
1np3_A	338	Ketol-acid reductoisomerase; A DEEP figure-OF-eigh	94.31
2yq5_A	343	D-isomer specific 2-hydroxyacid dehydrogenase; oxi	94.3
3i4f_A	264	3-oxoacyl-[acyl-carrier protein] reductase; struct	94.29
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	94.26
3qha_A	296	Putative oxidoreductase; seattle structural genomi	94.25
2o7s_A	523	DHQ-SDH PR, bifunctional 3-dehydroquinate dehydrat	94.24
3fbt_A	282	Chorismate mutase and shikimate 5-dehydrogenase fu	94.23
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	94.22
3enk_A	341	UDP-glucose 4-epimerase; seattle structural genomi	94.2
1qyd_A	313	Pinoresinol-lariciresinol reductase; NADPH-depende	94.2
2pi1_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	94.19
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	94.19
2z1m_A	345	GDP-D-mannose dehydratase; short-chain dehydrogena	94.15
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	94.15
3e18_A	359	Oxidoreductase; dehydrogenase, NAD-binding, struct	94.14
3gdg_A	267	Probable NADP-dependent mannitol dehydrogenase; ro	94.13
2qq5_A	260	DHRS1, dehydrogenase/reductase SDR family member 1	94.13
3ege_A	261	Putative methyltransferase from antibiotic biosyn	94.12
3oh8_A	516	Nucleoside-diphosphate sugar epimerase (SULA FAMI;	94.09
4iiu_A	267	3-oxoacyl-[acyl-carrier protein] reductase; struct	94.07
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	94.03

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=100.00  E-value=2.5e-52  Score=405.82  Aligned_cols=311  Identities=26%  Similarity=0.366  Sum_probs=260.5

Q ss_pred             CCCCCCCCCCcceeEEEEcccCCcceEEEeccccCCCCCCCeEEEEEeEEecChHhHHhhcCCCCCCCCCCCCcCCCcee
Q 016265           72 AEPTKVGTVPSEMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVA  151 (392)
Q Consensus        72 ~~~~~~~~~p~~mka~v~~~~~~~~~l~~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~~~p~v~G~e~~  151 (392)
                      ........||.+|||+++++++ ++.++++ +.+.|+|++|||||||.++|||++|++.+.|.++. ...+|.++|||++
T Consensus        16 ~~~~~~~~m~~~mkA~~~~~~~-~~~l~~~-e~p~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~-~~~~P~v~GhE~~   92 (363)
T 3uog_A           16 ENLYFQSMMSKWMQEWSTETVA-PHDLKLA-ERPVPEAGEHDIIVRTLAVSLNYRDKLVLETGMGL-DLAFPFVPASDMS   92 (363)
T ss_dssp             -------CCCSEEEEEEBSCTT-TTCCEEE-EEECCCCCTTEEEEEEEEEECCHHHHHHHHHCTTC-CCCSSBCCCCEEE
T ss_pred             ceeEEeccCchhhEEEEEccCC-CCCcEEE-eeeCCCCCCCEEEEEEEEEecCHHHHHHhcCCCCC-CCCCCcCcccceE
Confidence            4455556789999999999873 3458888 89999999999999999999999999999987652 3568999999999


Q ss_pred             EEEEEeCCCCCCCCCCCEEEeccccccc---------------CCCCCCCcceeEEEecCCceeeCCCCCCHHhHhccch
Q 016265          152 GVVVKVGTQVKEFKEGDEVYGDINEKAL---------------EGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPL  216 (392)
Q Consensus       152 G~V~~vG~~v~~~~vGdrV~~~~~~~~~---------------~~~~~~G~~a~~~~v~~~~~~~iP~~l~~~~aa~l~~  216 (392)
                      |+|+++|++|++|++||||++.+...+.               .|...+|+|+||++++++.++++|+++++++||++++
T Consensus        93 G~V~~vG~~v~~~~vGDrV~~~~~~~c~~g~~~c~~~~~~~~~~g~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~  172 (363)
T 3uog_A           93 GVVEAVGKSVTRFRPGDRVISTFAPGWLDGLRPGTGRTPAYETLGGAHPGVLSEYVVLPEGWFVAAPKSLDAAEASTLPC  172 (363)
T ss_dssp             EEEEEECTTCCSCCTTCEEEECSSTTCCSSSCCSCSSCCCCCCTTTTSCCCCBSEEEEEGGGEEECCTTSCHHHHHTTTT
T ss_pred             EEEEEECCCCCCCCCCCEEEEeccccccccccccccccccccccCcCCCCcceeEEEechHHeEECCCCCCHHHHhhccc
Confidence            9999999999999999999986321111               2334579999999999999999999999999999999


Q ss_pred             hHHHHHHHH-HhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCCccccC--
Q 016265          217 AIETAYEGL-ERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFEDL--  293 (392)
Q Consensus       217 ~~~ta~~al-~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~~~--  293 (392)
                      ++.|||+++ +.+++++|++|||+| +|++|++++|+||. .|++|++++++++|+++++++|+++++|...+++.+.  
T Consensus       173 ~~~ta~~al~~~~~~~~g~~VlV~G-~G~vG~~a~qla~~-~Ga~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~v~  250 (363)
T 3uog_A          173 AGLTAWFALVEKGHLRAGDRVVVQG-TGGVALFGLQIAKA-TGAEVIVTSSSREKLDRAFALGADHGINRLEEDWVERVY  250 (363)
T ss_dssp             HHHHHHHHHTTTTCCCTTCEEEEES-SBHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHH
T ss_pred             HHHHHHHHHHHhcCCCCCCEEEEEC-CCHHHHHHHHHHHH-cCCEEEEEecCchhHHHHHHcCCCEEEcCCcccHHHHHH
Confidence            999999999 678999999999999 99999999999998 5999999999999999999999999999654554331  


Q ss_pred             ----CCCccEEEecCc--cHHHHHHhcccCCeEEEEcCCCCC-C----------ceEEE--EeecHHHHHHHHHHHHCCC
Q 016265          294 ----PEKFDVVYDAIG--QCDRAVKAIKEGGTVVALTGAVTP-P----------GFRFV--VTSNGEVLKKLNPYLESGK  354 (392)
Q Consensus       294 ----~~~~D~vid~~G--~~~~~~~~l~~~G~iv~~g~~~~~-~----------~~~~~--~~~~~~~~~~~~~~l~~g~  354 (392)
                          .+++|++|||+|  .++.++++++++|+++.+|..... .          .+.+.  .....+.++++++++++|+
T Consensus       251 ~~~~g~g~D~vid~~g~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~l~~~g~  330 (363)
T 3uog_A          251 ALTGDRGADHILEIAGGAGLGQSLKAVAPDGRISVIGVLEGFEVSGPVGPLLLKSPVVQGISVGHRRALEDLVGAVDRLG  330 (363)
T ss_dssp             HHHTTCCEEEEEEETTSSCHHHHHHHEEEEEEEEEECCCSSCEECCBTTHHHHTCCEEEECCCCCHHHHHHHHHHHHHHT
T ss_pred             HHhCCCCceEEEECCChHHHHHHHHHhhcCCEEEEEecCCCcccCcCHHHHHhCCcEEEEEecCCHHHHHHHHHHHHcCC
Confidence                348999999998  478999999999999999865421 1          11111  1234678999999999999


Q ss_pred             cccccCCCcccchhhHHHHHHHHHhCCCCeeEEEEe
Q 016265          355 VKPIIDPKGPFPFSQVVEAFSYIETNKATGKVVIHP  390 (392)
Q Consensus       355 l~~~~~~t~~~~l~~~~~A~~~l~~~~~~gKvvl~~  390 (392)
                      +++.  ++++|+|+|+++||+.+++++ .||+||++
T Consensus       331 l~~~--i~~~~~l~~~~~A~~~~~~~~-~gKvvi~~  363 (363)
T 3uog_A          331 LKPV--IDMRYKFTEVPEALAHLDRGP-FGKVVIEF  363 (363)
T ss_dssp             CCCC--EEEEEEGGGHHHHHHTGGGCC-SBEEEEEC
T ss_pred             Cccc--eeeEEcHHHHHHHHHHHHcCC-CccEEEeC
Confidence            8765  458999999999999999999 89999975

>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}

Probab=100.00  E-value=3.1e-52  Score=398.60  Aligned_cols=300  Identities=34%  Similarity=0.504  Sum_probs=261.2

Q ss_pred             cceeEEEEcccCCcceEEEeccccCCCCCCCeEEEEEeEEecChHhHHhhcCC--CCC-CCCCCCCcCCCceeEEEEEeC
Q 016265           82 SEMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGK--FKA-TDSPLPTVPGYDVAGVVVKVG  158 (392)
Q Consensus        82 ~~mka~v~~~~~~~~~l~~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~g~--~~~-~~~~~p~v~G~e~~G~V~~vG  158 (392)
                      ++|||+++.+++.++.++++ +.+.|+|++|||||||.++|||++|++.+.|.  ++. ....+|.++|||++|+|+++|
T Consensus         5 ~~Mka~~~~~~g~~~~l~~~-~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~~~p~v~G~E~~G~V~~vG   83 (321)
T 3tqh_A            5 KEMKAIQFDQFGPPKVLKLV-DTPTPEYRKNQMLIKVHAASLNPIDYKTRNGSGFVAKKLKNNLPSGLGYDFSGEVIELG   83 (321)
T ss_dssp             CEEEEEEESSSCSGGGEEEE-EEECCCCCTTCEEEEEEEEECCHHHHHHHTTCSHHHHHHTTSCSBCCCCEEEEEEEEEC
T ss_pred             ccceEEEEccCCCcceeEEE-ecCCCCCCCCEEEEEEEEEEcCHHHHHHhcCCccccccccCCCCCcccceeEEEEEEeC
Confidence            36999999999988889998 89999999999999999999999999999883  110 134678999999999999999


Q ss_pred             CCCCCCCCCCEEEecccccccCCCCCCCcceeEEEecCCceeeCCCCCCHHhHhccchhHHHHHHHHHhcCCCCCCeEEE
Q 016265          159 TQVKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLERTGFSAGKSILV  238 (392)
Q Consensus       159 ~~v~~~~vGdrV~~~~~~~~~~~~~~~G~~a~~~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~al~~~~~~~g~~VlI  238 (392)
                      ++|++|++||||++....     ...+|+|+||++++++.++++|+++++++|+++++++.|||++++.+++++|++|||
T Consensus        84 ~~v~~~~~GdrV~~~~~~-----~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~al~~~~~~~g~~vlV  158 (321)
T 3tqh_A           84 SDVNNVNIGDKVMGIAGF-----PDHPCCYAEYVCASPDTIIQKLEKLSFLQAASLPTAGLTALQALNQAEVKQGDVVLI  158 (321)
T ss_dssp             TTCCSCCTTCEEEEECST-----TTCCCCSBSEEEECGGGEEECCTTSCHHHHHHSHHHHHHHHHHHHHTTCCTTCEEEE
T ss_pred             CCCCCCCCCCEEEEccCC-----CCCCCcceEEEEecHHHhccCCCCCCHHHHhhhhhHHHHHHHHHHhcCCCCCCEEEE
Confidence            999999999999987531     124699999999999999999999999999999999999999999899999999999


Q ss_pred             EcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCCc-cccCCCCccEEEecCc--cHHHHHHhcc
Q 016265          239 LNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDN-FEDLPEKFDVVYDAIG--QCDRAVKAIK  315 (392)
Q Consensus       239 ~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~-~~~~~~~~D~vid~~G--~~~~~~~~l~  315 (392)
                      +||+|++|++++|+||. .|+++++++ +++++++++++|+++++|+.+.+ +.+..+++|++|||+|  ..+.++++++
T Consensus       159 ~Ga~G~vG~~a~q~a~~-~Ga~vi~~~-~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~g~D~v~d~~g~~~~~~~~~~l~  236 (321)
T 3tqh_A          159 HAGAGGVGHLAIQLAKQ-KGTTVITTA-SKRNHAFLKALGAEQCINYHEEDFLLAISTPVDAVIDLVGGDVGIQSIDCLK  236 (321)
T ss_dssp             SSTTSHHHHHHHHHHHH-TTCEEEEEE-CHHHHHHHHHHTCSEEEETTTSCHHHHCCSCEEEEEESSCHHHHHHHGGGEE
T ss_pred             EcCCcHHHHHHHHHHHH-cCCEEEEEe-ccchHHHHHHcCCCEEEeCCCcchhhhhccCCCEEEECCCcHHHHHHHHhcc
Confidence            99999999999999998 599887776 56679999999999999998887 7776689999999999  3589999999


Q ss_pred             cCCeEEEEcCCCCC--------CceEEE---EeecHHHHHHHHHHHHCCCcccccCCCcccchhhHHHHHHHHHhCCCCe
Q 016265          316 EGGTVVALTGAVTP--------PGFRFV---VTSNGEVLKKLNPYLESGKVKPIIDPKGPFPFSQVVEAFSYIETNKATG  384 (392)
Q Consensus       316 ~~G~iv~~g~~~~~--------~~~~~~---~~~~~~~~~~~~~~l~~g~l~~~~~~t~~~~l~~~~~A~~~l~~~~~~g  384 (392)
                      ++|+++.++.....        ..+.+.   .....+.++++++++++|++++.  ++++|+++|+++||+.+++++..|
T Consensus       237 ~~G~iv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~--i~~~~~l~~~~~A~~~~~~~~~~g  314 (321)
T 3tqh_A          237 ETGCIVSVPTITAGRVIEVAKQKHRRAFGLLKQFNIEELHYLGKLVSEDKLRIE--ISRIFQLSEAVTAHELLETGHVRG  314 (321)
T ss_dssp             EEEEEEECCSTTHHHHHHHHHHTTCEEECCCCCCCHHHHHHHHHHHHTTSSCCC--EEEEECGGGHHHHHHHHHTTCCCS
T ss_pred             CCCEEEEeCCCCchhhhhhhhhcceEEEEEecCCCHHHHHHHHHHHHCCCcccc--cccEEcHHHHHHHHHHHHcCCCCc
Confidence            99999999765411        112221   23356789999999999999975  568999999999999999999999


Q ss_pred             eEEEEeC
Q 016265          385 KVVIHPI  391 (392)
Q Consensus       385 Kvvl~~~  391 (392)
                      |+|+++.
T Consensus       315 Kvvl~~~  321 (321)
T 3tqh_A          315 KLVFKVR  321 (321)
T ss_dssp             EEEEECC
T ss_pred             eEEEEeC
Confidence            9999874

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}

Probab=100.00  E-value=8.1e-52  Score=400.79  Aligned_cols=301  Identities=29%  Similarity=0.499  Sum_probs=261.8

Q ss_pred             CCCCCCcceeEEEEcccCCcceEEEeccccCCCCCCCeEEEEEeEEecChHhHHhhcCCCCCCCCCCCCcCCCceeEEEE
Q 016265           76 KVGTVPSEMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVV  155 (392)
Q Consensus        76 ~~~~~p~~mka~v~~~~~~~~~l~~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~~~p~v~G~e~~G~V~  155 (392)
                      ..+.||.+|||+++++++.++.++++ +.+.|+|++|||+|||.++|||++|++.+.|.++. ...+|.++|||++|+|+
T Consensus        21 ~~~~~p~~MkA~~~~~~g~~~~l~~~-~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~-~~~~p~i~G~E~~G~V~   98 (353)
T 4dup_A           21 QSMSLPQEMRFVDLKSFGGPDVMVIG-KRPLPVAGEGEVLVRAEAIGVNRPDIAQRQGSYPP-PKDASPILGLELSGEIV   98 (353)
T ss_dssp             --CCCCSSEEEEEESSSSSGGGEEEE-EECCCCCCTTEEEEEEEEEEECHHHHHHHTTSSCC-CTTSCSSSCCEEEEEEE
T ss_pred             ecCCCChheeEEEEccCCCccceEEE-eccCCCCCCCEEEEEEEEEecCHHHHHHhCCCCCC-CCCCCCccccccEEEEE
Confidence            44568999999999999888889999 89999999999999999999999999999998753 34578999999999999


Q ss_pred             EeCCCCCCCCCCCEEEecccccccCCCCCCCcceeEEEecCCceeeCCCCCCHHhHhccchhHHHHHHHH-HhcCCCCCC
Q 016265          156 KVGTQVKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGL-ERTGFSAGK  234 (392)
Q Consensus       156 ~vG~~v~~~~vGdrV~~~~~~~~~~~~~~~G~~a~~~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~al-~~~~~~~g~  234 (392)
                      ++|++|++|++||||++..         .+|+|+||++++++.++++|+++++++||++++++.|||+++ +.+++++|+
T Consensus        99 ~vG~~v~~~~vGdrV~~~~---------~~G~~aey~~v~~~~~~~~P~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~  169 (353)
T 4dup_A           99 GVGPGVSGYAVGDKVCGLA---------NGGAYAEYCLLPAGQILPFPKGYDAVKAAALPETFFTVWANLFQMAGLTEGE  169 (353)
T ss_dssp             EECTTCCSCCTTCEEEEEC---------SSCCSBSEEEEEGGGEEECCTTCCHHHHHTSHHHHHHHHHHHTTTTCCCTTC
T ss_pred             EECCCCCCCCCCCEEEEec---------CCCceeeEEEEcHHHcEeCCCCCCHHHHhhhhhHHHHHHHHHHHhcCCCCCC
Confidence            9999999999999999864         369999999999999999999999999999999999999999 678999999


Q ss_pred             eEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCCccccC-----CCCccEEEecCc--cH
Q 016265          235 SILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFEDL-----PEKFDVVYDAIG--QC  307 (392)
Q Consensus       235 ~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~~~-----~~~~D~vid~~G--~~  307 (392)
                      +|||+||+|++|++++|+|+. .|++|++++++++|+++++++|+++++|+.+.++.+.     .+++|++|||+|  .+
T Consensus       170 ~VlV~Gg~g~iG~~~~~~a~~-~Ga~Vi~~~~~~~~~~~~~~lGa~~~~~~~~~~~~~~~~~~~~~g~Dvvid~~g~~~~  248 (353)
T 4dup_A          170 SVLIHGGTSGIGTTAIQLARA-FGAEVYATAGSTGKCEACERLGAKRGINYRSEDFAAVIKAETGQGVDIILDMIGAAYF  248 (353)
T ss_dssp             EEEESSTTSHHHHHHHHHHHH-TTCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHHSSCEEEEEESCCGGGH
T ss_pred             EEEEEcCCCHHHHHHHHHHHH-cCCEEEEEeCCHHHHHHHHhcCCCEEEeCCchHHHHHHHHHhCCCceEEEECCCHHHH
Confidence            999999999999999999998 5999999999999999999999999999987765332     458999999998  46


Q ss_pred             HHHHHhcccCCeEEEEcCCCCCCc--e----------EEEEee----c--------HHHHHHHHHHHHCCCcccccCCCc
Q 016265          308 DRAVKAIKEGGTVVALTGAVTPPG--F----------RFVVTS----N--------GEVLKKLNPYLESGKVKPIIDPKG  363 (392)
Q Consensus       308 ~~~~~~l~~~G~iv~~g~~~~~~~--~----------~~~~~~----~--------~~~~~~~~~~l~~g~l~~~~~~t~  363 (392)
                      +.++++++++|+++.+|.......  +          .+....    .        .+.++++++++++|++++.  +++
T Consensus       249 ~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~--i~~  326 (353)
T 4dup_A          249 ERNIASLAKDGCLSIIAFLGGAVAEKVNLSPIMVKRLTVTGSTMRPRTAEEKRAIRDDLLSEVWPLLEAGTVAPV--IHK  326 (353)
T ss_dssp             HHHHHTEEEEEEEEECCCTTCSEEEEEECHHHHHTTCEEEECCSTTSCHHHHHHHHHHHHHHTHHHHHHTSSCCC--EEE
T ss_pred             HHHHHHhccCCEEEEEEecCCCcccCCCHHHHHhcCceEEEEeccccchhhhHHHHHHHHHHHHHHHHCCCccCC--cce
Confidence            899999999999999986542211  1          111100    0        1227788999999999875  468


Q ss_pred             ccchhhHHHHHHHHHhCCCCeeEEEEe
Q 016265          364 PFPFSQVVEAFSYIETNKATGKVVIHP  390 (392)
Q Consensus       364 ~~~l~~~~~A~~~l~~~~~~gKvvl~~  390 (392)
                      +|+++|+++||+.+++++..||+||++
T Consensus       327 ~~~l~~~~~A~~~l~~~~~~gKvvl~~  353 (353)
T 4dup_A          327 VFAFEDVADAHRLLEEGSHVGKVMLTV  353 (353)
T ss_dssp             EEEGGGHHHHHHHHHHTCCSSEEEEEC
T ss_pred             EEeHHHHHHHHHHHHhCCCCceEEEeC
Confidence            999999999999999999999999975

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=100.00  E-value=2.1e-51  Score=396.00  Aligned_cols=299  Identities=21%  Similarity=0.328  Sum_probs=259.3

Q ss_pred             CCcceeEEEEcccCCc-ceEEEeccccCCCCCCCeEEEEEeEEecChHhHHhhcCCCCCCCCCCCCcCCCceeEEEEEeC
Q 016265           80 VPSEMKAWLYGEYGGV-DVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVG  158 (392)
Q Consensus        80 ~p~~mka~v~~~~~~~-~~l~~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~~~p~v~G~e~~G~V~~vG  158 (392)
                      |+.+|||+++++++.+ +.++++ +.+.|+|++|||+|||.++|||++|++.+.|.++. ...+|.++|||++|+|+++|
T Consensus         1 M~~~mka~~~~~~g~p~~~l~~~-~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~-~~~~p~i~G~E~~G~V~~vG   78 (340)
T 3gms_A            1 MSLHGKLIQFHKFGNPKDVLQVE-YKNIEPLKDNEVFVRMLVRPINPSDLIPITGAYAH-RIPLPNIPGYEGVGIVENVG   78 (340)
T ss_dssp             -CCEEEEEEESSCSCHHHHEEEE-EEECCCCCTTEEEEEEEEEECCHHHHGGGGTTTTT-TSCSSBCCCSCCEEEEEEEC
T ss_pred             CCcccEEEEEecCCCchheEEEE-ecCCCCCCCCEEEEEEEEecCCHHHHHHhcCCCCC-CCCCCCcCCcceEEEEEEeC
Confidence            4568999999999987 678888 89999999999999999999999999999998653 34689999999999999999


Q ss_pred             CCCCCCCCCCEEEecccccccCCCCCCCcceeEEEecCCceeeCCCCCCHHhHhccchhHHHHHHHH-HhcCCCCCCeEE
Q 016265          159 TQVKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGL-ERTGFSAGKSIL  237 (392)
Q Consensus       159 ~~v~~~~vGdrV~~~~~~~~~~~~~~~G~~a~~~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~al-~~~~~~~g~~Vl  237 (392)
                      ++|++|++||||++..         .+|+|+||++++++.++++|+++++++||++++.++|||+++ +.+++++|++||
T Consensus        79 ~~v~~~~vGdrV~~~~---------~~G~~aey~~v~~~~~~~vP~~l~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~Vl  149 (340)
T 3gms_A           79 AFVSRELIGKRVLPLR---------GEGTWQEYVKTSADFVVPIPDSIDDFTAAQMYINPLTAWVTCTETLNLQRNDVLL  149 (340)
T ss_dssp             TTSCGGGTTCEEEECS---------SSCSSBSEEEEEGGGEEECCTTSCHHHHTTSSHHHHHHHHHHHTTSCCCTTCEEE
T ss_pred             CCCCCCCCCCEEEecC---------CCccceeEEEcCHHHeEECCCCCCHHHHhhhcchHHHHHHHHHHhcccCCCCEEE
Confidence            9999999999999753         369999999999999999999999999999999999999998 578999999999


Q ss_pred             EEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCCccccC------CCCccEEEecCcc--HHH
Q 016265          238 VLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFEDL------PEKFDVVYDAIGQ--CDR  309 (392)
Q Consensus       238 I~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~~~------~~~~D~vid~~G~--~~~  309 (392)
                      |+|++|++|++++|+|+.. |++|++++++++++++++++|+++++|+.+.++.+.      .+++|++|||+|.  ...
T Consensus       150 V~Ga~g~iG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~lga~~~~~~~~~~~~~~~~~~~~~~g~Dvvid~~g~~~~~~  228 (340)
T 3gms_A          150 VNACGSAIGHLFAQLSQIL-NFRLIAVTRNNKHTEELLRLGAAYVIDTSTAPLYETVMELTNGIGADAAIDSIGGPDGNE  228 (340)
T ss_dssp             ESSTTSHHHHHHHHHHHHH-TCEEEEEESSSTTHHHHHHHTCSEEEETTTSCHHHHHHHHTTTSCEEEEEESSCHHHHHH
T ss_pred             EeCCccHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHhCCCcEEEeCCcccHHHHHHHHhCCCCCcEEEECCCChhHHH
Confidence            9998889999999999985 999999999999999999999999999987765431      3489999999993  466


Q ss_pred             HHHhcccCCeEEEEcCCCCC----------CceEEEEe------------ecHHHHHHHHHHHHCCCcccccCCCcccch
Q 016265          310 AVKAIKEGGTVVALTGAVTP----------PGFRFVVT------------SNGEVLKKLNPYLESGKVKPIIDPKGPFPF  367 (392)
Q Consensus       310 ~~~~l~~~G~iv~~g~~~~~----------~~~~~~~~------------~~~~~~~~~~~~l~~g~l~~~~~~t~~~~l  367 (392)
                      ++++++++|+++.+|.....          ..+.+...            ...+.++++++++++|++++.. ++++|++
T Consensus       229 ~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~~-i~~~~~l  307 (340)
T 3gms_A          229 LAFSLRPNGHFLTIGLLSGIQVNWAEIVTKAKVHANIFHLRHWNDEVSPYKWQETFRHLIRLVENEQLRFMK-VHSTYEL  307 (340)
T ss_dssp             HHHTEEEEEEEEECCCTTSCCCCHHHHHHTSCCEEEECCHHHHHHHSCHHHHHHHHHHHHHHHHTTSSCCCC-EEEEEEG
T ss_pred             HHHHhcCCCEEEEEeecCCCCCCHHHhhhcccceEEEEEehhhhhhcCHHHHHHHHHHHHHHHHcCCCcccc-ccEEEeH
Confidence            77999999999999865421          12222211            1245688999999999998753 4789999


Q ss_pred             hhHHHHHHHHHhCCCC-eeEEEEeC
Q 016265          368 SQVVEAFSYIETNKAT-GKVVIHPI  391 (392)
Q Consensus       368 ~~~~~A~~~l~~~~~~-gKvvl~~~  391 (392)
                      +|+++||+.+++++.. ||+++++.
T Consensus       308 ~~~~~A~~~~~~~~~~~GKvvl~~~  332 (340)
T 3gms_A          308 ADVKAAVDVVQSAEKTKGKVFLTSY  332 (340)
T ss_dssp             GGHHHHHHHHHCTTCCSSEEEEECC
T ss_pred             HHHHHHHHHHHhcCCCCCeEEEEEe
Confidence            9999999999999854 99999875

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=100.00  E-value=2.7e-51  Score=395.42  Aligned_cols=298  Identities=29%  Similarity=0.401  Sum_probs=254.9

Q ss_pred             CCCCCCcceeEEEEcccCCcceEEEeccccCCCCCCCeEEEEEeEEecChHhHHhhcCCCCCCCCCCCCcCCCceeEEEE
Q 016265           76 KVGTVPSEMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVV  155 (392)
Q Consensus        76 ~~~~~p~~mka~v~~~~~~~~~l~~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~~~p~v~G~e~~G~V~  155 (392)
                      +...+|.+|||+++.+++.++.++++ +.+.|+|++|||+|||.++|||++|++.+.|.++ ....+|.++|||++|+|+
T Consensus        14 ~~~~~p~~MkA~~~~~~g~~~~l~~~-~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~-~~~~~p~v~G~E~~G~V~   91 (342)
T 4eye_A           14 AQTQGPGSMKAIQAQSLSGPEGLVYT-DVETPGAGPNVVVVDVKAAGVCFPDYLMTKGEYQ-LKMEPPFVPGIETAGVVR   91 (342)
T ss_dssp             ----CCCEEEEEEECSSSGGGGEEEE-EEECCCCCTTCEEEEEEEEECCHHHHHHHTTCSS-SCCCSSBCCCSEEEEEEE
T ss_pred             ccccCCcceEEEEEecCCCCceeEEE-eCCCCCCCCCEEEEEEEEEecCHHHHHHhcCCCC-CCCCCCCccceeEEEEEE
Confidence            34568999999999998888779999 8999999999999999999999999999999864 234679999999999999


Q ss_pred             EeCCCCCCCCCCCEEEecccccccCCCCCCCcceeEEEecCCceeeCCCCCCHHhHhccchhHHHHHHHH-HhcCCCCCC
Q 016265          156 KVGTQVKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGL-ERTGFSAGK  234 (392)
Q Consensus       156 ~vG~~v~~~~vGdrV~~~~~~~~~~~~~~~G~~a~~~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~al-~~~~~~~g~  234 (392)
                      ++|++|+ |++||||++..         .+|+|+||++++++.++++|+++++++|+++++++.|||+++ +.+++++|+
T Consensus        92 ~vG~~v~-~~vGDrV~~~~---------~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~  161 (342)
T 4eye_A           92 SAPEGSG-IKPGDRVMAFN---------FIGGYAERVAVAPSNILPTPPQLDDAEAVALIANYHTMYFAYARRGQLRAGE  161 (342)
T ss_dssp             ECCTTSS-CCTTCEEEEEC---------SSCCSBSEEEECGGGEEECCTTSCHHHHHHHTTHHHHHHHHHHTTSCCCTTC
T ss_pred             EECCCCC-CCCCCEEEEec---------CCCcceEEEEEcHHHeEECCCCCCHHHHHHhhhHHHHHHHHHHHhcCCCCCC
Confidence            9999999 99999999864         369999999999999999999999999999999999999999 678999999


Q ss_pred             eEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCCccccC------CCCccEEEecCc--c
Q 016265          235 SILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFEDL------PEKFDVVYDAIG--Q  306 (392)
Q Consensus       235 ~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~~~------~~~~D~vid~~G--~  306 (392)
                      +|||+|++|++|++++|+|+. .|++|++++++++++++++++|+++++|+. .++.+.      .+++|++|||+|  .
T Consensus       162 ~VlV~Gasg~iG~~~~~~a~~-~Ga~Vi~~~~~~~~~~~~~~~ga~~v~~~~-~~~~~~v~~~~~~~g~Dvvid~~g~~~  239 (342)
T 4eye_A          162 TVLVLGAAGGIGTAAIQIAKG-MGAKVIAVVNRTAATEFVKSVGADIVLPLE-EGWAKAVREATGGAGVDMVVDPIGGPA  239 (342)
T ss_dssp             EEEESSTTSHHHHHHHHHHHH-TTCEEEEEESSGGGHHHHHHHTCSEEEESS-TTHHHHHHHHTTTSCEEEEEESCC--C
T ss_pred             EEEEECCCCHHHHHHHHHHHH-cCCEEEEEeCCHHHHHHHHhcCCcEEecCc-hhHHHHHHHHhCCCCceEEEECCchhH
Confidence            999999889999999999998 599999999999999999999999999988 554331      347999999998  4


Q ss_pred             HHHHHHhcccCCeEEEEcCCCCC-----------CceEEEEee-----------cHHHHHHHHHHHHCCCcccccCCCcc
Q 016265          307 CDRAVKAIKEGGTVVALTGAVTP-----------PGFRFVVTS-----------NGEVLKKLNPYLESGKVKPIIDPKGP  364 (392)
Q Consensus       307 ~~~~~~~l~~~G~iv~~g~~~~~-----------~~~~~~~~~-----------~~~~~~~~~~~l~~g~l~~~~~~t~~  364 (392)
                      ++.++++++++|+++.+|.....           ..+.+....           ..+.++++++++++| +++.  ++++
T Consensus       240 ~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~l~~~g-l~~~--i~~~  316 (342)
T 4eye_A          240 FDDAVRTLASEGRLLVVGFAAGGIPTIKVNRLLLRNASLIGVAWGEFLRTHADYLYETQAGLEKLVAEG-MRPP--VSAR  316 (342)
T ss_dssp             HHHHHHTEEEEEEEEEC----------CCCCGGGTTCEEEECCHHHHHHHCTTHHHHHHHHHHHHHHTT-CCCC--EEEE
T ss_pred             HHHHHHhhcCCCEEEEEEccCCCCCccCHHHHhhcCCEEEEEehhhhhhcCHHHHHHHHHHHHHHHHcC-CCCC--cceE
Confidence            78999999999999999754311           111222111           124588899999999 7765  4589


Q ss_pred             cchhhHHHHHHHHHhCCCCeeEEEEe
Q 016265          365 FPFSQVVEAFSYIETNKATGKVVIHP  390 (392)
Q Consensus       365 ~~l~~~~~A~~~l~~~~~~gKvvl~~  390 (392)
                      |+++|+++||+.+.+++..||+||+|
T Consensus       317 ~~l~~~~~A~~~~~~~~~~gKvvl~P  342 (342)
T 4eye_A          317 IPLSEGRQALQDFADGKVYGKMVLVP  342 (342)
T ss_dssp             EEGGGHHHHHHHHHTTCCCSEEEEEC
T ss_pred             EeHHHHHHHHHHHHhCCCCceEEEeC
Confidence            99999999999999999999999985

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=100.00  E-value=3.3e-51  Score=393.61  Aligned_cols=297  Identities=26%  Similarity=0.375  Sum_probs=259.4

Q ss_pred             CCCCcceeEEEEcccCCcceEEEeccccCCCCCCCeEEEEEeEEecChHhHHhhcCCCCCCCCCCCCcCCCceeEEEEEe
Q 016265           78 GTVPSEMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKV  157 (392)
Q Consensus        78 ~~~p~~mka~v~~~~~~~~~l~~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~~~p~v~G~e~~G~V~~v  157 (392)
                      +.+|.+|||+++++++.++.++++ +.+.|+|++|||||||.++|||++|++.+.|.++   ..+|.++|||++|+|+++
T Consensus         3 ~~~p~~mka~~~~~~g~~~~l~~~-~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~---~~~P~i~G~e~~G~V~~v   78 (334)
T 3qwb_A            3 CTIPEQQKVILIDEIGGYDVIKYE-DYPVPSISEEELLIKNKYTGVNYIESYFRKGIYP---CEKPYVLGREASGTVVAK   78 (334)
T ss_dssp             --CCSEEEEEEESSSSSGGGEEEE-EEECCCCCTTEEEEEEEEEECCTTHHHHHHTSSC---CCSSEECCSEEEEEEEEE
T ss_pred             CCCchheEEEEEecCCCCceeEEE-eccCCCCCCCEEEEEEEEEecCHHHHHHHCCCCC---CCCCCccccceEEEEEEE
Confidence            357899999999999988789998 8999999999999999999999999999999864   357999999999999999


Q ss_pred             CCCCCCCCCCCEEEecccccccCCCCCCCcceeEEEec-CCceeeCCCCCCHHh---HhccchhHHHHHHHHHh-cCCCC
Q 016265          158 GTQVKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVE-ERLLAPKPKNLDFVQ---AAGLPLAIETAYEGLER-TGFSA  232 (392)
Q Consensus       158 G~~v~~~~vGdrV~~~~~~~~~~~~~~~G~~a~~~~v~-~~~~~~iP~~l~~~~---aa~l~~~~~ta~~al~~-~~~~~  232 (392)
                      |++|++|++||||++..          +|+|+||++++ ++.++++|+++++++   ++++++.+.|||+++.+ .++++
T Consensus        79 G~~v~~~~~GdrV~~~~----------~G~~aey~~v~~~~~~~~~P~~~~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~  148 (334)
T 3qwb_A           79 GKGVTNFEVGDQVAYIS----------NSTFAQYSKISSQGPVMKLPKGTSDEELKLYAAGLLQVLTALSFTNEAYHVKK  148 (334)
T ss_dssp             CTTCCSCCTTCEEEEEC----------SSCSBSEEEEETTSSEEECCTTCCHHHHHHHHHHHHHHHHHHHHHHTTSCCCT
T ss_pred             CCCCCCCCCCCEEEEee----------CCcceEEEEecCcceEEECCCCCCHHHhhhhhhhhhHHHHHHHHHHHhccCCC
Confidence            99999999999999864          59999999999 999999999999999   88888999999999965 68999


Q ss_pred             CCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCCccccC------CCCccEEEecCc-
Q 016265          233 GKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFEDL------PEKFDVVYDAIG-  305 (392)
Q Consensus       233 g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~~~------~~~~D~vid~~G-  305 (392)
                      |++|||+||+|++|++++|+|+. .|++|++++++++|+++++++|+++++|+.+.++.+.      .+++|++|||+| 
T Consensus       149 g~~vlV~Ga~g~iG~~~~~~a~~-~Ga~Vi~~~~~~~~~~~~~~~ga~~~~~~~~~~~~~~~~~~~~~~g~D~vid~~g~  227 (334)
T 3qwb_A          149 GDYVLLFAAAGGVGLILNQLLKM-KGAHTIAVASTDEKLKIAKEYGAEYLINASKEDILRQVLKFTNGKGVDASFDSVGK  227 (334)
T ss_dssp             TCEEEESSTTBHHHHHHHHHHHH-TTCEEEEEESSHHHHHHHHHTTCSEEEETTTSCHHHHHHHHTTTSCEEEEEECCGG
T ss_pred             CCEEEEECCCCHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHcCCcEEEeCCCchHHHHHHHHhCCCCceEEEECCCh
Confidence            99999999999999999999998 5999999999999999999999999999987765331      457999999998 


Q ss_pred             -cHHHHHHhcccCCeEEEEcCCCCC-----------CceEEEE------eec----HHHHHHHHHHHHCCCcccccCCCc
Q 016265          306 -QCDRAVKAIKEGGTVVALTGAVTP-----------PGFRFVV------TSN----GEVLKKLNPYLESGKVKPIIDPKG  363 (392)
Q Consensus       306 -~~~~~~~~l~~~G~iv~~g~~~~~-----------~~~~~~~------~~~----~~~~~~~~~~l~~g~l~~~~~~t~  363 (392)
                       .++.++++++++|+++.+|....+           ..+.+..      ...    .+.++++++++++|++++.  +++
T Consensus       228 ~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~--i~~  305 (334)
T 3qwb_A          228 DTFEISLAALKRKGVFVSFGNASGLIPPFSITRLSPKNITLVRPQLYGYIADPEEWKYYSDEFFGLVNSKKLNIK--IYK  305 (334)
T ss_dssp             GGHHHHHHHEEEEEEEEECCCTTCCCCCBCGGGGTTTTCEEECCCGGGGSCSHHHHHHHHHHHHHHHHTTSSCCC--EEE
T ss_pred             HHHHHHHHHhccCCEEEEEcCCCCCCCCcchhhhhhCceEEEEEEeccccCCHHHHHHHHHHHHHHHHCCCccCc--eee
Confidence             478999999999999999865421           1122221      011    2345789999999999986  568


Q ss_pred             ccchhhHHHHHHHHHhCCCCeeEEEEeC
Q 016265          364 PFPFSQVVEAFSYIETNKATGKVVIHPI  391 (392)
Q Consensus       364 ~~~l~~~~~A~~~l~~~~~~gKvvl~~~  391 (392)
                      +|+++|+++||+.+++++..||+||+++
T Consensus       306 ~~~l~~~~~A~~~~~~~~~~gKvvi~~~  333 (334)
T 3qwb_A          306 TYPLRDYRTAAADIESRKTVGKLVLEIP  333 (334)
T ss_dssp             EEEGGGHHHHHHHHHTTCCCBEEEEECC
T ss_pred             EEcHHHHHHHHHHHHhCCCceEEEEecC
Confidence            9999999999999999999999999975

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=100.00  E-value=9.3e-51  Score=391.41  Aligned_cols=300  Identities=24%  Similarity=0.352  Sum_probs=257.8

Q ss_pred             ceeEEEEcccCCcceEEEeccccCCCCCCCeEEEEEeEEecChHhHHhhcCCCCCCCCCCCCcCCCceeEEEEEeCCCCC
Q 016265           83 EMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVK  162 (392)
Q Consensus        83 ~mka~v~~~~~~~~~l~~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~~~p~v~G~e~~G~V~~vG~~v~  162 (392)
                      +|||+++++++.+  ++++ +.+.|+|++|||||||.++|||++|++.+.|.++. ...+|.++|||++|+|+++|++|+
T Consensus         2 ~MkA~~~~~~g~~--l~~~-~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~-~~~~P~v~G~E~~G~V~~vG~~v~   77 (340)
T 3s2e_A            2 MMKAAVVRAFGAP--LTID-EVPVPQPGPGQVQVKIEASGVCHTDLHAADGDWPV-KPTLPFIPGHEGVGYVSAVGSGVS   77 (340)
T ss_dssp             EEEEEEBCSTTSC--CEEE-EEECCCCCTTCEEEEEEEEEECHHHHHHHHTCSSS-CCCSSBCCCSEEEEEEEEECSSCC
T ss_pred             ceEEEEEecCCCC--CEEE-EccCCCCCCCeEEEEEEEeccCHHHHHHHcCCCCC-CCCCCcccCCcceEEEEEECCCCC
Confidence            5999999988765  7888 89999999999999999999999999999998753 246899999999999999999999


Q ss_pred             CCCCCCEEEecc-----c--------------ccccCCCCCCCcceeEEEecCCceeeCCCCCCHHhHhccchhHHHHHH
Q 016265          163 EFKEGDEVYGDI-----N--------------EKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYE  223 (392)
Q Consensus       163 ~~~vGdrV~~~~-----~--------------~~~~~~~~~~G~~a~~~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~  223 (392)
                      +|++||||+...     .              .....|...+|+|+||++++++.++++|+++++++||.+++++.|||+
T Consensus        78 ~~~vGdrV~~~~~~~~cg~C~~c~~g~~~~c~~~~~~g~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~  157 (340)
T 3s2e_A           78 RVKEGDRVGVPWLYSACGYCEHCLQGWETLCEKQQNTGYSVNGGYGEYVVADPNYVGLLPDKVGFVEIAPILCAGVTVYK  157 (340)
T ss_dssp             SCCTTCEEEEESEEECCSSSHHHHTTCGGGCTTCEEBTTTBCCSSBSEEEECTTTSEECCTTSCHHHHGGGGTHHHHHHH
T ss_pred             cCCCCCEEEecCCCCCCCCChHHhCcCcccCccccccCCCCCCcceeEEEechHHEEECCCCCCHHHhhcccchhHHHHH
Confidence            999999995321     0              011134456799999999999999999999999999999999999999


Q ss_pred             HHHhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCCccccC----CCCccE
Q 016265          224 GLERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFEDL----PEKFDV  299 (392)
Q Consensus       224 al~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~~~----~~~~D~  299 (392)
                      +++..++++|++|||+| +|++|++++|+||.+ |++|++++++++|+++++++|+++++|+.+.++.+.    .+++|+
T Consensus       158 ~l~~~~~~~g~~VlV~G-aG~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~~~g~~d~  235 (340)
T 3s2e_A          158 GLKVTDTRPGQWVVISG-IGGLGHVAVQYARAM-GLRVAAVDIDDAKLNLARRLGAEVAVNARDTDPAAWLQKEIGGAHG  235 (340)
T ss_dssp             HHHTTTCCTTSEEEEEC-CSTTHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHSSEEE
T ss_pred             HHHHcCCCCCCEEEEEC-CCHHHHHHHHHHHHC-CCeEEEEeCCHHHHHHHHHcCCCEEEeCCCcCHHHHHHHhCCCCCE
Confidence            99999999999999998 699999999999984 999999999999999999999999999988665332    238999


Q ss_pred             EEecCc---cHHHHHHhcccCCeEEEEcCCCCCCc----------eEE--EEeecHHHHHHHHHHHHCCCcccccCCCcc
Q 016265          300 VYDAIG---QCDRAVKAIKEGGTVVALTGAVTPPG----------FRF--VVTSNGEVLKKLNPYLESGKVKPIIDPKGP  364 (392)
Q Consensus       300 vid~~G---~~~~~~~~l~~~G~iv~~g~~~~~~~----------~~~--~~~~~~~~~~~~~~~l~~g~l~~~~~~t~~  364 (392)
                      +||++|   .++.++++++++|+++.+|....+..          +.+  ......+.++++++++++|++++.   ++.
T Consensus       236 vid~~g~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~l~~~g~l~~~---~~~  312 (340)
T 3s2e_A          236 VLVTAVSPKAFSQAIGMVRRGGTIALNGLPPGDFGTPIFDVVLKGITIRGSIVGTRSDLQESLDFAAHGDVKAT---VST  312 (340)
T ss_dssp             EEESSCCHHHHHHHHHHEEEEEEEEECSCCSSEEEEEHHHHHHTTCEEEECCSCCHHHHHHHHHHHHTTSCCCC---EEE
T ss_pred             EEEeCCCHHHHHHHHHHhccCCEEEEeCCCCCCCCCCHHHHHhCCeEEEEEecCCHHHHHHHHHHHHhCCCCce---EEE
Confidence            999987   36899999999999999986542211          111  122346789999999999999874   468


Q ss_pred             cchhhHHHHHHHHHhCCCCeeEEEEeC
Q 016265          365 FPFSQVVEAFSYIETNKATGKVVIHPI  391 (392)
Q Consensus       365 ~~l~~~~~A~~~l~~~~~~gKvvl~~~  391 (392)
                      |+|+|+++||+.+++++..||+||+++
T Consensus       313 ~~l~~~~~A~~~~~~~~~~Gkvvv~~~  339 (340)
T 3s2e_A          313 AKLDDVNDVFGRLREGKVEGRVVLDFS  339 (340)
T ss_dssp             ECGGGHHHHHHHHHTTCCCSEEEEECC
T ss_pred             EeHHHHHHHHHHHHcCCCceEEEEecC
Confidence            999999999999999999999999986

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*

Probab=100.00  E-value=9.9e-51  Score=388.87  Aligned_cols=294  Identities=29%  Similarity=0.366  Sum_probs=257.7

Q ss_pred             ceeEEEEcccCCcceEEEeccccCCCCCCCeEEEEEeEEecChHhHHhhcCCCCCCCCCCCCcCCCceeEEEEEeCCCCC
Q 016265           83 EMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVK  162 (392)
Q Consensus        83 ~mka~v~~~~~~~~~l~~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~~~p~v~G~e~~G~V~~vG~~v~  162 (392)
                      +|||+++++++.++.++++ +.+.|+|++|||+|||.++|||++|++.+.|.++.  ..+|.++|||++|+|+++|++|+
T Consensus         1 MMkA~~~~~~g~~~~l~~~-~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~--~~~p~v~G~e~~G~V~~vG~~v~   77 (325)
T 3jyn_A            1 MAKRIQFSTVGGPEVLEYV-DFEPEAPGPQAVVVRNKAIGLNFIDTYYRSGLYPA--PFLPSGLGAEGAGVVEAVGDEVT   77 (325)
T ss_dssp             CEEEEEBSSCSSGGGCEEE-EECCCCCCTTEEEEEEEEEECCHHHHHHHHTSSCC--SSSSBCCCCCEEEEEEEECTTCC
T ss_pred             CcEEEEEecCCCcceeEEe-ecCCCCCCCCEEEEEEEEEecCHHHHHHHCCCCCC--CCCCCCCCceeEEEEEEECCCCC
Confidence            3999999999988889998 89999999999999999999999999999998753  46789999999999999999999


Q ss_pred             CCCCCCEEEecccccccCCCCCCCcceeEEEecCCceeeCCCCCCHHhHhccchhHHHHHHHHH-hcCCCCCCeEEEEcC
Q 016265          163 EFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLE-RTGFSAGKSILVLNG  241 (392)
Q Consensus       163 ~~~vGdrV~~~~~~~~~~~~~~~G~~a~~~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~al~-~~~~~~g~~VlI~Ga  241 (392)
                      +|++||||++...        .+|+|+||++++++.++++|+++++++|+++++.++|+|+++. .+++++|++|||+||
T Consensus        78 ~~~~GdrV~~~~~--------~~G~~aey~~v~~~~~~~~P~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Ga  149 (325)
T 3jyn_A           78 RFKVGDRVAYGTG--------PLGAYSEVHVLPEANLVKLADSVSFEQAAALMLKGLTVQYLLRQTYQVKPGEIILFHAA  149 (325)
T ss_dssp             SCCTTCEEEESSS--------SSCCSBSEEEEEGGGEEECCTTSCHHHHHHHHHHHHHHHHHHHTTSCCCTTCEEEESST
T ss_pred             CCCCCCEEEEecC--------CCccccceEEecHHHeEECCCCCCHHHHhhhhhhHHHHHHHHHHhcCCCCCCEEEEEcC
Confidence            9999999998542        3699999999999999999999999999999999999999996 578999999999999


Q ss_pred             CCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCCccccC------CCCccEEEecCc--cHHHHHHh
Q 016265          242 SGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFEDL------PEKFDVVYDAIG--QCDRAVKA  313 (392)
Q Consensus       242 ~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~~~------~~~~D~vid~~G--~~~~~~~~  313 (392)
                      +|++|++++|+|+.. |++|++++++++|+++++++|+++++|+.+.++.+.      .+++|++|||+|  .++.++++
T Consensus       150 ~g~iG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~~~~~~~~~g~Dvvid~~g~~~~~~~~~~  228 (325)
T 3jyn_A          150 AGGVGSLACQWAKAL-GAKLIGTVSSPEKAAHAKALGAWETIDYSHEDVAKRVLELTDGKKCPVVYDGVGQDTWLTSLDS  228 (325)
T ss_dssp             TSHHHHHHHHHHHHH-TCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTCCEEEEEESSCGGGHHHHHTT
T ss_pred             CcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHcCCCEEEeCCCccHHHHHHHHhCCCCceEEEECCChHHHHHHHHH
Confidence            999999999999995 999999999999999999999999999987765431      358999999998  46899999


Q ss_pred             cccCCeEEEEcCCCCCC------------ceEEEEe----------ecHHHHHHHHHHHHCCCcccccCCCcccchhhHH
Q 016265          314 IKEGGTVVALTGAVTPP------------GFRFVVT----------SNGEVLKKLNPYLESGKVKPIIDPKGPFPFSQVV  371 (392)
Q Consensus       314 l~~~G~iv~~g~~~~~~------------~~~~~~~----------~~~~~~~~~~~~l~~g~l~~~~~~t~~~~l~~~~  371 (392)
                      ++++|+++.+|....+.            .+.+...          ...+.++++++++++|++++.  ++++|+++|++
T Consensus       229 l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~--i~~~~~l~~~~  306 (325)
T 3jyn_A          229 VAPRGLVVSFGNASGPVSGVNLGILAQKDSVYVTRPTLGSYANNAQNLQTMADELFDMLASGKLKVD--GIEQYALKDAA  306 (325)
T ss_dssp             EEEEEEEEECCCTTCCCCSCCTHHHHHTTSCEEECCCHHHHSCSTTHHHHHHHHHHHHHHTTSSCCC--CCEEEEGGGHH
T ss_pred             hcCCCEEEEEecCCCCCCCCCHHHHhhcCcEEEEeeeeeeecCCHHHHHHHHHHHHHHHHCCCeeCc--cccEEcHHHHH
Confidence            99999999998654221            1111100          012345689999999999987  57899999999


Q ss_pred             HHHHHHHhCCCCeeEEEEe
Q 016265          372 EAFSYIETNKATGKVVIHP  390 (392)
Q Consensus       372 ~A~~~l~~~~~~gKvvl~~  390 (392)
                      +||+.+++++..||+||.|
T Consensus       307 ~A~~~~~~~~~~Gkvvl~p  325 (325)
T 3jyn_A          307 KAQIELSARRTTGSTILIP  325 (325)
T ss_dssp             HHHHHHHTTCCCSCEEEEC
T ss_pred             HHHHHHHcCCCCceEEEeC
Confidence            9999999999999999975

>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*

Probab=100.00  E-value=1.5e-50  Score=390.99  Aligned_cols=299  Identities=24%  Similarity=0.298  Sum_probs=255.8

Q ss_pred             eeEEEEcccCCcceEEEeccccCCCCCCCeEEEEEeEEecChHhHHhhcCCCCCCCCCCCCcCCCceeEEEEEeCCCCCC
Q 016265           84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKE  163 (392)
Q Consensus        84 mka~v~~~~~~~~~l~~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~~~p~v~G~e~~G~V~~vG~~v~~  163 (392)
                      |||+++...++ ..++++ |.|+|+|+||||||||.++|||++|+++++|.++   .++|.++|||++|+|+++|++|++
T Consensus         1 MKA~v~~~~~~-~~~~l~-e~~~P~~~p~eVLVkv~a~gic~~D~~~~~G~~~---~~~p~i~GhE~aG~V~~vG~~V~~   75 (348)
T 4eez_A            1 MKAAVVRHNPD-GYADLV-EKELRAIKPNEALLDMEYCGVCHTDLHVAAGDFG---NKAGTVLGHEGIGIVKEIGADVSS   75 (348)
T ss_dssp             CEEEEECSSCC-SSEEEE-ECCCCCCCTTEEEEEEEEEECCHHHHHHHTTTTC---CCTTCBCCSEEEEEEEEECTTCCS
T ss_pred             CeEEEEEcCCC-CcEEEE-EeECCCCCCCEEEEEEEEEEECHHHHHHhcCCCC---CCCCcccceeEEEEEEEECceeee
Confidence            89999965332 337888 8999999999999999999999999999999874   457999999999999999999999


Q ss_pred             CCCCCEEEeccccc-------------------ccCCCCCCCcceeEEEecCCceeeCCCCCCHHhHhccchhHHHHHHH
Q 016265          164 FKEGDEVYGDINEK-------------------ALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEG  224 (392)
Q Consensus       164 ~~vGdrV~~~~~~~-------------------~~~~~~~~G~~a~~~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~a  224 (392)
                      |++||||+......                   ...+...+|+|+||+.++++.++++|+++++++|+++++++.|||++
T Consensus        76 ~~~GdrV~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~~ae~~~~~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~  155 (348)
T 4eez_A           76 LQVGDRVSVAWFFEGCGHCEYCVSGNETFCREVKNAGYSVDGGMAEEAIVVADYAVKVPDGLDPIEASSITCAGVTTYKA  155 (348)
T ss_dssp             CCTTCEEEEESEEECCSSSHHHHTTCGGGCTTCEEBTTTBCCSSBSEEEEEGGGSCBCCTTSCHHHHHHHHHHHHHHHHH
T ss_pred             cccCCeEeecccccccCccccccCCcccccccccccccccCCcceeeccccccceeecCCCCCHHHHhhcccceeeEEee
Confidence            99999997643211                   11344567999999999999999999999999999999999999999


Q ss_pred             HHhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCCccccC------CCCcc
Q 016265          225 LERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFEDL------PEKFD  298 (392)
Q Consensus       225 l~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~~~------~~~~D  298 (392)
                      ++.+++++|++|||+| +|++|.+++|+|+.+.|++|++++++++|+++++++|+++++|+.+.++.+.      ..++|
T Consensus       156 l~~~~~~~g~~VlV~G-aG~~g~~a~~~a~~~~g~~Vi~~~~~~~r~~~~~~~Ga~~~i~~~~~~~~~~v~~~t~g~g~d  234 (348)
T 4eez_A          156 IKVSGVKPGDWQVIFG-AGGLGNLAIQYAKNVFGAKVIAVDINQDKLNLAKKIGADVTINSGDVNPVDEIKKITGGLGVQ  234 (348)
T ss_dssp             HHHHTCCTTCEEEEEC-CSHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHHHTTCSEEEEC-CCCHHHHHHHHTTSSCEE
T ss_pred             ecccCCCCCCEEEEEc-CCCccHHHHHHHHHhCCCEEEEEECcHHHhhhhhhcCCeEEEeCCCCCHHHHhhhhcCCCCce
Confidence            9999999999999998 7999999999999866889999999999999999999999999988776432      45799


Q ss_pred             EEEecCcc---HHHHHHhcccCCeEEEEcCCCCCCc----------eEE--EEeecHHHHHHHHHHHHCCCcccccCCCc
Q 016265          299 VVYDAIGQ---CDRAVKAIKEGGTVVALTGAVTPPG----------FRF--VVTSNGEVLKKLNPYLESGKVKPIIDPKG  363 (392)
Q Consensus       299 ~vid~~G~---~~~~~~~l~~~G~iv~~g~~~~~~~----------~~~--~~~~~~~~~~~~~~~l~~g~l~~~~~~t~  363 (392)
                      ++++++|.   ++.++++++++|+++.+|.......          +.+  ........++++++++++|++++.   ++
T Consensus       235 ~~~~~~~~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~gs~~~~~~~~~~~~~l~~~g~i~p~---~~  311 (348)
T 4eez_A          235 SAIVCAVARIAFEQAVASLKPMGKMVAVAVPNTEMTLSVPTVVFDGVEVAGSLVGTRLDLAEAFQFGAEGKVKPI---VA  311 (348)
T ss_dssp             EEEECCSCHHHHHHHHHTEEEEEEEEECCCCSCEEEECHHHHHHSCCEEEECCSCCHHHHHHHHHHHHTTSCCCC---EE
T ss_pred             EEEEeccCcchhheeheeecCCceEEEEeccCCCCccCHHHHHhCCeEEEEEecCCHHHHHHHHHHHHcCCCEEE---EE
Confidence            99999873   6899999999999999986542211          111  122346789999999999999864   47


Q ss_pred             ccchhhHHHHHHHHHhCCCCeeEEEEeC
Q 016265          364 PFPFSQVVEAFSYIETNKATGKVVIHPI  391 (392)
Q Consensus       364 ~~~l~~~~~A~~~l~~~~~~gKvvl~~~  391 (392)
                      +|||+|+++||+.+++++..||+||+|.
T Consensus       312 ~~~l~~~~~A~~~l~~g~~~GKvVl~~s  339 (348)
T 4eez_A          312 TRKLEEINDIIDEMKAGKIEGRMVIDFT  339 (348)
T ss_dssp             EECGGGHHHHHHHHHTTCCSSEEEEECC
T ss_pred             EEeHHHHHHHHHHHHCCCCccEEEEEcc
Confidence            8999999999999999999999999875

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=100.00  E-value=1.8e-50  Score=394.99  Aligned_cols=306  Identities=20%  Similarity=0.238  Sum_probs=257.7

Q ss_pred             CCCCcceeEEEEcccCCcceEEEeccccCCCCCCCeEEEEEeEEecChHhHHhhcCCCCCCCCCCCCcCCCceeEEEEEe
Q 016265           78 GTVPSEMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKV  157 (392)
Q Consensus        78 ~~~p~~mka~v~~~~~~~~~l~~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~~~p~v~G~e~~G~V~~v  157 (392)
                      +.+|.+|||+++++++.+  ++++ +++.|+|++|||||||.++|||++|++.+.|.++  ...+|.++|||++|+|+++
T Consensus         3 ~~~~~tmkA~v~~~~~~~--l~~~-~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~--~~~~P~v~GhE~~G~V~~v   77 (378)
T 3uko_A            3 QGQVITCKAAVAYEPNKP--LVIE-DVQVAPPQAGEVRIKILYTALCHTDAYTWSGKDP--EGLFPCILGHEAAGIVESV   77 (378)
T ss_dssp             TTSCEEEEEEEBCSTTSC--CEEE-EEEECCCCTTEEEEEEEEEEECHHHHHHHTTCCT--TCCSSBCCCCEEEEEEEEE
T ss_pred             cccceeeEEEEEecCCCc--cEEE-EecCCCCCCCeEEEEEEEeecCHHHHHHhcCCCC--CCCCCccCCccceEEEEEe
Confidence            467889999999998875  7777 8999999999999999999999999999999864  3468999999999999999


Q ss_pred             CCCCCCCCCCCEEEecccccc-------------c--------CC-------------------CCCCCcceeEEEecCC
Q 016265          158 GTQVKEFKEGDEVYGDINEKA-------------L--------EG-------------------PKQFGSLAEYTAVEER  197 (392)
Q Consensus       158 G~~v~~~~vGdrV~~~~~~~~-------------~--------~~-------------------~~~~G~~a~~~~v~~~  197 (392)
                      |++|++|++||||++.....+             +        .|                   ....|+|+||++++++
T Consensus        78 G~~v~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~G~~~~~g~~~~~~~g~~~~~~~~~G~~aey~~v~~~  157 (378)
T 3uko_A           78 GEGVTEVQAGDHVIPCYQAECRECKFCKSGKTNLCGKVRSATGVGIMMNDRKSRFSVNGKPIYHFMGTSTFSQYTVVHDV  157 (378)
T ss_dssp             CTTCCSCCTTCEEEECSSCCCSSSHHHHHTSCSCCCSSHHHHTTTCCTTTSSCSEEETTEEEBCCTTTCCSBSEEEEEGG
T ss_pred             CCCCCcCCCCCEEEEecCCCCCCChhhhCcCcCcCcCcccccccccccccCccccccCCcccccccCCcceEeEEEechh
Confidence            999999999999987543110             0        00                   0113799999999999


Q ss_pred             ceeeCCCCCCHHhHhccchhHHHHHHHH-HhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCC-eEEEEeCCcccHHHHH
Q 016265          198 LLAPKPKNLDFVQAAGLPLAIETAYEGL-ERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGA-SRVAATSSTRNLEFLK  275 (392)
Q Consensus       198 ~~~~iP~~l~~~~aa~l~~~~~ta~~al-~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~-~vv~~~~~~~~~~~~~  275 (392)
                      .++++|+++++++|+.+++++.|||+++ +.+++++|++|||+| +|++|++++|+||.+ |+ +|++++.+++|+++++
T Consensus       158 ~~~~iP~~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~VlV~G-aG~vG~~a~q~a~~~-Ga~~Vi~~~~~~~~~~~a~  235 (378)
T 3uko_A          158 SVAKIDPTAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSNVAIFG-LGTVGLAVAEGAKTA-GASRIIGIDIDSKKYETAK  235 (378)
T ss_dssp             GEEECCTTSCHHHHGGGGTHHHHHHHHHHTTTCCCTTCCEEEEC-CSHHHHHHHHHHHHH-TCSCEEEECSCTTHHHHHH
T ss_pred             heEECCCCCCHHHhhhhhhhHHHHHHHHHhhcCCCCCCEEEEEC-CCHHHHHHHHHHHHc-CCCeEEEEcCCHHHHHHHH
Confidence            9999999999999999999999999998 568999999999998 599999999999995 99 7888888999999999


Q ss_pred             hcCCcEEEeCC--CCcccc-----CCCCccEEEecCcc---HHHHHHhcccC-CeEEEEcCCCCCCce-----------E
Q 016265          276 SLGADLAIDYT--KDNFED-----LPEKFDVVYDAIGQ---CDRAVKAIKEG-GTVVALTGAVTPPGF-----------R  333 (392)
Q Consensus       276 ~~G~~~vi~~~--~~~~~~-----~~~~~D~vid~~G~---~~~~~~~l~~~-G~iv~~g~~~~~~~~-----------~  333 (392)
                      ++|+++++|+.  +.++.+     ..+++|+||||+|.   ++.++++++++ |+++.+|.......+           .
T Consensus       236 ~lGa~~vi~~~~~~~~~~~~i~~~~~gg~D~vid~~g~~~~~~~~~~~l~~g~G~iv~~G~~~~~~~~~~~~~~~~~~~~  315 (378)
T 3uko_A          236 KFGVNEFVNPKDHDKPIQEVIVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVTGRV  315 (378)
T ss_dssp             TTTCCEEECGGGCSSCHHHHHHHHTTSCBSEEEECSCCHHHHHHHHHTBCTTTCEEEECSCCCTTCCEEECTHHHHTTCE
T ss_pred             HcCCcEEEccccCchhHHHHHHHhcCCCCCEEEECCCCHHHHHHHHHHhhccCCEEEEEcccCCCCccccCHHHHhcCcE
Confidence            99999999987  344432     13489999999994   58999999996 999999875422211           1


Q ss_pred             EEEe-----ecHHHHHHHHHHHHCCCcccccCCCcccchhhHHHHHHHHHhCCCCeeEEEEeC
Q 016265          334 FVVT-----SNGEVLKKLNPYLESGKVKPIIDPKGPFPFSQVVEAFSYIETNKATGKVVIHPI  391 (392)
Q Consensus       334 ~~~~-----~~~~~~~~~~~~l~~g~l~~~~~~t~~~~l~~~~~A~~~l~~~~~~gKvvl~~~  391 (392)
                      +...     ...+.++++++++.+|++++...++++|+|+|+++||+.+++++.. |+||+++
T Consensus       316 i~g~~~~~~~~~~~~~~~~~l~~~g~l~~~~~i~~~~~l~~~~~A~~~~~~g~~~-Kvvi~~~  377 (378)
T 3uko_A          316 WKGTAFGGFKSRTQVPWLVEKYMNKEIKVDEYITHNLTLGEINKAFDLLHEGTCL-RCVLDTS  377 (378)
T ss_dssp             EEECSGGGCCHHHHHHHHHHHHHTTSSCCGGGEEEEEEGGGHHHHHHHTTCTTCS-EEEEETT
T ss_pred             EEEEEecCCCchHHHHHHHHHHHcCCCChhHheeeEeeHHHHHHHHHHHHCCCce-EEEEecC
Confidence            1111     1356789999999999998776678999999999999999988875 9999875

>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans}

Probab=100.00  E-value=2.3e-50  Score=389.15  Aligned_cols=299  Identities=34%  Similarity=0.539  Sum_probs=253.5

Q ss_pred             CCcceeEEEEcccCCcceEEEeccccCCCCCCCeEEEEEeEEecChHhHHhhcCCCCCCCCCCCCcCCCceeEEEEEeCC
Q 016265           80 VPSEMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGT  159 (392)
Q Consensus        80 ~p~~mka~v~~~~~~~~~l~~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~~~p~v~G~e~~G~V~~vG~  159 (392)
                      +|.+|||+++.+++.+  ++++ ++|.|+|++|||||||.++|||++|++.+.|..+.....+|.++|||++|+|+++|+
T Consensus         4 ~~~~mka~~~~~~~~~--l~~~-~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~P~v~G~E~~G~V~~vG~   80 (343)
T 3gaz_A            4 TTPTMIAAVVEEANGP--FVLR-KLARPQPAPGQVLVQIEASGTNPLDAKIRAGEAPHAQQPLPAILGMDLAGTVVAVGP   80 (343)
T ss_dssp             --CEEEEEEECSTTCC--EEEE-EEECCCCCTTEEEEEEEEEECCHHHHHHHTTCCGGGCCCSSBCCCCEEEEEEEEECT
T ss_pred             CchhheEEEEecCCCc--eEEE-eccCCCCCCCEEEEEEEEEEeCHhhHHHhCCCCCCCCCCCCcccCcceEEEEEEECC
Confidence            5788999999998876  7888 899999999999999999999999999999875433356899999999999999999


Q ss_pred             CCCCCCCCCEEEecccccccCCCCCCCcceeEEEecCCceeeCCCCCCHHhHhccchhHHHHHHHH-HhcCCCCCCeEEE
Q 016265          160 QVKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGL-ERTGFSAGKSILV  238 (392)
Q Consensus       160 ~v~~~~vGdrV~~~~~~~~~~~~~~~G~~a~~~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~al-~~~~~~~g~~VlI  238 (392)
                      +|++|++||||+++....    ...+|+|+||++++++.++++|+++++++|+.++++++|||+++ +.+++++|++|||
T Consensus        81 ~v~~~~vGdrV~~~~~g~----~~~~G~~aey~~v~~~~~~~~P~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV  156 (343)
T 3gaz_A           81 EVDSFRVGDAVFGLTGGV----GGLQGTHAQFAAVDARLLASKPAALTMRQASVLPLVFITAWEGLVDRAQVQDGQTVLI  156 (343)
T ss_dssp             TCCSCCTTCEEEEECCSS----TTCCCSSBSEEEEEGGGEEECCTTSCHHHHHTSHHHHHHHHHHHTTTTCCCTTCEEEE
T ss_pred             CCCCCCCCCEEEEEeCCC----CCCCcceeeEEEecHHHeeeCCCCCCHHHHHHhhhhHHHHHHHHHHhcCCCCCCEEEE
Confidence            999999999999865321    12469999999999999999999999999999999999999999 7899999999999


Q ss_pred             EcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCCcccc------CCCCccEEEecCcc--HHHH
Q 016265          239 LNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFED------LPEKFDVVYDAIGQ--CDRA  310 (392)
Q Consensus       239 ~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~~------~~~~~D~vid~~G~--~~~~  310 (392)
                      +||+|++|++++|+|+. .|++|+++ .+++|+++++++|++. +| ...++.+      ..+++|++|||+|.  ++.+
T Consensus       157 ~Ga~g~iG~~~~q~a~~-~Ga~Vi~~-~~~~~~~~~~~lGa~~-i~-~~~~~~~~~~~~~~~~g~D~vid~~g~~~~~~~  232 (343)
T 3gaz_A          157 QGGGGGVGHVAIQIALA-RGARVFAT-ARGSDLEYVRDLGATP-ID-ASREPEDYAAEHTAGQGFDLVYDTLGGPVLDAS  232 (343)
T ss_dssp             ETTTSHHHHHHHHHHHH-TTCEEEEE-ECHHHHHHHHHHTSEE-EE-TTSCHHHHHHHHHTTSCEEEEEESSCTHHHHHH
T ss_pred             ecCCCHHHHHHHHHHHH-CCCEEEEE-eCHHHHHHHHHcCCCE-ec-cCCCHHHHHHHHhcCCCceEEEECCCcHHHHHH
Confidence            99999999999999998 59998888 8899999999999998 77 5554433      13589999999994  6899


Q ss_pred             HHhcccCCeEEEEcCCCCC-------CceEEEEee-------------cHHHHHHHHHHHHCCCcccccCCC-cccchhh
Q 016265          311 VKAIKEGGTVVALTGAVTP-------PGFRFVVTS-------------NGEVLKKLNPYLESGKVKPIIDPK-GPFPFSQ  369 (392)
Q Consensus       311 ~~~l~~~G~iv~~g~~~~~-------~~~~~~~~~-------------~~~~~~~~~~~l~~g~l~~~~~~t-~~~~l~~  369 (392)
                      +++++++|+++.++.....       ..+.+....             ..+.++++++++++|++++.  ++ ++|+++|
T Consensus       233 ~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~--i~~~~~~l~~  310 (343)
T 3gaz_A          233 FSAVKRFGHVVSCLGWGTHKLAPLSFKQATYSGVFTLHTLLANEGLAHFGEMLREADALVQTGKLAPR--LDPRTFSIAE  310 (343)
T ss_dssp             HHHEEEEEEEEESCCCSCCCCHHHHHTTCEEEECCTTHHHHHTCSHHHHHHHHHHHHHHHHTTCCCCC--BCSCCEETTC
T ss_pred             HHHHhcCCeEEEEcccCccccchhhhcCcEEEEEEeccchhcccchHHHHHHHHHHHHHHHCCCcccC--ccCcEecHHH
Confidence            9999999999999865411       112222111             13678999999999999875  45 6899999


Q ss_pred             HHHHHHHHHhCCC----CeeEEEEeC
Q 016265          370 VVEAFSYIETNKA----TGKVVIHPI  391 (392)
Q Consensus       370 ~~~A~~~l~~~~~----~gKvvl~~~  391 (392)
                      +++||+.+++++.    .||+|++++
T Consensus       311 ~~~A~~~~~~~~~~Gr~~GK~v~~~~  336 (343)
T 3gaz_A          311 IGSAYDAVLGRNDVPRQRGKIAITVE  336 (343)
T ss_dssp             HHHHHHHHHTCTTCCCCSSBCEEECC
T ss_pred             HHHHHHHHHcCCCcccccceEEEEec
Confidence            9999999999865    589999874

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=100.00  E-value=3.3e-50  Score=388.82  Aligned_cols=298  Identities=19%  Similarity=0.214  Sum_probs=253.1

Q ss_pred             CCcceeEEEEcccCCcceEEEeccccCCCCCCCeEEEEEeEEecChHhHHhhcCCCCCCCCCCCCcCCCceeEEEEEeCC
Q 016265           80 VPSEMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGT  159 (392)
Q Consensus        80 ~p~~mka~v~~~~~~~~~l~~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~~~p~v~G~e~~G~V~~vG~  159 (392)
                      |+.+|||+++.++++.  ++++ +++.|+|++|||||||.++|||++|++.+.|.++.  ..+|.++|||++|+|+++|+
T Consensus         1 M~m~mka~~~~~~~~~--l~~~-~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~--~~~p~i~G~E~~G~V~~vG~   75 (348)
T 3two_A            1 MRVQSKGFAIFSKDEH--FKPH-DFSRHAVGPRDVLIDILYAGICHSDIHSAYSEWKE--GIYPMIPGHEIAGIIKEVGK   75 (348)
T ss_dssp             CCEEEEEEEBCSTTSC--CEEE-EEEECCCCTTEEEEEEEEEEECHHHHHHHTTSSSC--CCSSBCCCCCEEEEEEEECT
T ss_pred             CceEEEEEEEccCCCC--CeEE-EeeCCCCCCCeEEEEEEEeeecccchhhhcCCCCC--CCCCeecCcceeEEEEEECC
Confidence            4568999999987654  7888 89999999999999999999999999999998753  46799999999999999999


Q ss_pred             CCCCCCCCCEEEecccc------------------cccC----------CCCCCCcceeEEEecCCceeeCCCCCCHHhH
Q 016265          160 QVKEFKEGDEVYGDINE------------------KALE----------GPKQFGSLAEYTAVEERLLAPKPKNLDFVQA  211 (392)
Q Consensus       160 ~v~~~~vGdrV~~~~~~------------------~~~~----------~~~~~G~~a~~~~v~~~~~~~iP~~l~~~~a  211 (392)
                      +|++|++||||++....                  ....          +....|+|+||++++++.++++|+++++++|
T Consensus        76 ~v~~~~vGdrV~~~~~~~~Cg~C~~C~~g~~~~c~~~~~~~~~~~~~~~~~~~~G~~aey~~v~~~~~~~iP~~~~~~~a  155 (348)
T 3two_A           76 GVKKFKIGDVVGVGCFVNSCKACKPCKEHQEQFCTKVVFTYDCLDSFHDNEPHMGGYSNNIVVDENYVISVDKNAPLEKV  155 (348)
T ss_dssp             TCCSCCTTCEEEECSEEECCSCSHHHHTTCGGGCTTCEESSSSEEGGGTTEECCCSSBSEEEEEGGGCEECCTTSCHHHH
T ss_pred             CCCCCCCCCEEEEeCCcCCCCCChhHhCCCcccCcccccccccccccccCCcCCccccceEEechhhEEECCCCCCHHHh
Confidence            99999999999763210                  0001          1112399999999999999999999999999


Q ss_pred             hccchhHHHHHHHHHhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCCccc
Q 016265          212 AGLPLAIETAYEGLERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFE  291 (392)
Q Consensus       212 a~l~~~~~ta~~al~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~  291 (392)
                      |.+++++.|||+++++.++++|++|||+| +|++|++++|+||. .|++|++++.+++|+++++++|+++++ .+.+   
T Consensus       156 a~l~~~~~ta~~~l~~~~~~~g~~VlV~G-aG~vG~~a~qla~~-~Ga~Vi~~~~~~~~~~~~~~lGa~~v~-~~~~---  229 (348)
T 3two_A          156 APLLCAGITTYSPLKFSKVTKGTKVGVAG-FGGLGSMAVKYAVA-MGAEVSVFARNEHKKQDALSMGVKHFY-TDPK---  229 (348)
T ss_dssp             GGGGTHHHHHHHHHHHTTCCTTCEEEEES-CSHHHHHHHHHHHH-TTCEEEEECSSSTTHHHHHHTTCSEEE-SSGG---
T ss_pred             hhhhhhHHHHHHHHHhcCCCCCCEEEEEC-CcHHHHHHHHHHHH-CCCeEEEEeCCHHHHHHHHhcCCCeec-CCHH---
Confidence            99999999999999989999999999998 59999999999998 599999999999999999999999998 3322   


Q ss_pred             cCCCCccEEEecCc---cHHHHHHhcccCCeEEEEcCCC-CCCc-eE-----------EE--EeecHHHHHHHHHHHHCC
Q 016265          292 DLPEKFDVVYDAIG---QCDRAVKAIKEGGTVVALTGAV-TPPG-FR-----------FV--VTSNGEVLKKLNPYLESG  353 (392)
Q Consensus       292 ~~~~~~D~vid~~G---~~~~~~~~l~~~G~iv~~g~~~-~~~~-~~-----------~~--~~~~~~~~~~~~~~l~~g  353 (392)
                      ...+++|+|||++|   .++.++++++++|+++.+|... .+.. ++           +.  .......++++++++++|
T Consensus       230 ~~~~~~D~vid~~g~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~l~~~g  309 (348)
T 3two_A          230 QCKEELDFIISTIPTHYDLKDYLKLLTYNGDLALVGLPPVEVAPVLSVFDFIHLGNRKVYGSLIGGIKETQEMVDFSIKH  309 (348)
T ss_dssp             GCCSCEEEEEECCCSCCCHHHHHTTEEEEEEEEECCCCCGGGCCEEEHHHHHHTCSCEEEECCSCCHHHHHHHHHHHHHT
T ss_pred             HHhcCCCEEEECCCcHHHHHHHHHHHhcCCEEEEECCCCCCCcccCCHHHHHhhCCeEEEEEecCCHHHHHHHHHHHHhC
Confidence            23349999999998   4799999999999999998655 2222 21           11  112357799999999999


Q ss_pred             CcccccCCCcccchhhHHHHHHHHHhCCCCeeEEEEeC
Q 016265          354 KVKPIIDPKGPFPFSQVVEAFSYIETNKATGKVVIHPI  391 (392)
Q Consensus       354 ~l~~~~~~t~~~~l~~~~~A~~~l~~~~~~gKvvl~~~  391 (392)
                      ++++.   +++|+++|+++||+.+++++..||+||+++
T Consensus       310 ~l~~~---~~~~~l~~~~~A~~~~~~~~~~gKvVi~~~  344 (348)
T 3two_A          310 NIYPE---IDLILGKDIDTAYHNLTHGKAKFRYVIDMK  344 (348)
T ss_dssp             TCCCC---EEEECGGGHHHHHHHHHTTCCCSEEEEEGG
T ss_pred             CCCce---EEEEEHHHHHHHHHHHHcCCCceEEEEecC
Confidence            99874   379999999999999999999899999875

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}

Probab=100.00  E-value=2.8e-50  Score=391.31  Aligned_cols=302  Identities=29%  Similarity=0.432  Sum_probs=254.5

Q ss_pred             CcceeEEEEccc---CCcceEEEeccccCCCCCCCeEEEEEeEEecChHhHHhhcCCCCCCCCCCCCcCCCceeEEEEEe
Q 016265           81 PSEMKAWLYGEY---GGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKV  157 (392)
Q Consensus        81 p~~mka~v~~~~---~~~~~l~~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~~~p~v~G~e~~G~V~~v  157 (392)
                      ..+|||++++++   +.++.++++ ++|.|+|++|||+|||.++|||++|++.+.|.++.  ..+|.++|||++|+|+++
T Consensus        20 m~~MkA~~~~~~~~~~~~~~l~~~-~~p~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~--~~~p~v~G~E~~G~V~~v   96 (363)
T 4dvj_A           20 FQSMKAVGYNKPAPITDDASLLDI-ELPKPAPAGHDILVEVKAVSVNPVDYKVRRSTPPD--GTDWKVIGYDAAGIVSAV   96 (363)
T ss_dssp             CCEEEEEEBSSCCCTTSTTSSEEE-EEECCCCCTTEEEEEEEEEECCHHHHHHHHHCCC----CCSBCCCCCEEEEEEEE
T ss_pred             hheeEEEEEeccCCCCCCceEEEe-ecCCCCCCCCEEEEEEEEEEeCHHHHHHHcCCCCC--CCCCCcccceeEEEEEEe
Confidence            357999999987   455668888 89999999999999999999999999999988643  467899999999999999


Q ss_pred             CCCCCCCCCCCEEEecccccccCCCCCCCcceeEEEecCCceeeCCCCCCHHhHhccchhHHHHHHHH-HhcCCC-----
Q 016265          158 GTQVKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGL-ERTGFS-----  231 (392)
Q Consensus       158 G~~v~~~~vGdrV~~~~~~~~~~~~~~~G~~a~~~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~al-~~~~~~-----  231 (392)
                      |++|++|++||||++...      ...+|+|+||++++++.++++|+++++++||+++++++|||+++ +.++++     
T Consensus        97 G~~v~~~~vGdrV~~~~~------~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~al~~~~~~~~~~~~  170 (363)
T 4dvj_A           97 GPDVTLFRPGDEVFYAGS------IIRPGTNAEFHLVDERIVGRKPKTLDWAEAAALPLTSITAWEAFFDRLDVNKPVPG  170 (363)
T ss_dssp             CTTCCSCCTTCEEEECCC------TTSCCSCBSEEEEEGGGCEECCTTSCHHHHHTSHHHHHHHHHHHHTTSCTTSCCTT
T ss_pred             CCCCCCCCCCCEEEEccC------CCCCccceEEEEeCHHHeeECCCCCCHHHHHhhhhHHHHHHHHHHHhhCcCcCcCC
Confidence            999999999999998532      23469999999999999999999999999999999999999999 567887     


Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCCcccc---C-CCCccEEEecCcc-
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFED---L-PEKFDVVYDAIGQ-  306 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~~---~-~~~~D~vid~~G~-  306 (392)
                      +|++|||+||+|++|++++|+||.+.|++|++++++++|+++++++|+++++|+.++..+.   . .+++|+||||+|. 
T Consensus       171 ~g~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~~~~~~~~~~lGad~vi~~~~~~~~~v~~~~~~g~Dvvid~~g~~  250 (363)
T 4dvj_A          171 AAPAILIVGGAGGVGSIAVQIARQRTDLTVIATASRPETQEWVKSLGAHHVIDHSKPLAAEVAALGLGAPAFVFSTTHTD  250 (363)
T ss_dssp             SEEEEEEESTTSHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHTTCSEEECTTSCHHHHHHTTCSCCEEEEEECSCHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHhcCCCceEEEECCCch
Confidence            8999999999999999999999975588999999999999999999999999987532221   2 3589999999983 


Q ss_pred             --HHHHHHhcccCCeEEEEcCCCC-------CCceEEEEee--------------cHHHHHHHHHHHHCCCcccccCCC-
Q 016265          307 --CDRAVKAIKEGGTVVALTGAVT-------PPGFRFVVTS--------------NGEVLKKLNPYLESGKVKPIIDPK-  362 (392)
Q Consensus       307 --~~~~~~~l~~~G~iv~~g~~~~-------~~~~~~~~~~--------------~~~~~~~~~~~l~~g~l~~~~~~t-  362 (392)
                        ++.++++++++|+++.++....       ...+.+....              ..+.++++++++++|++++.+..+ 
T Consensus       251 ~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~k~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~i~~~~  330 (363)
T 4dvj_A          251 KHAAEIADLIAPQGRFCLIDDPSAFDIMLFKRKAVSIHHELMFTRPMFGTPDMSEQGRLLNDVSRLVDEGRLRTTLTNRL  330 (363)
T ss_dssp             HHHHHHHHHSCTTCEEEECSCCSSCCGGGGTTTTCEEEECCTTHHHHHTCTTTHHHHHHHHHHHHHHHHTSSCCCEEEEE
T ss_pred             hhHHHHHHHhcCCCEEEEECCCCccchHHHhhccceEEEEEeeccccccCcchhhHHHHHHHHHHHHHCCCeecccccee
Confidence              5899999999999999965431       1122222110              145688999999999999764321 


Q ss_pred             cccchhhHHHHHHHHHhCCCCeeEEEEeC
Q 016265          363 GPFPFSQVVEAFSYIETNKATGKVVIHPI  391 (392)
Q Consensus       363 ~~~~l~~~~~A~~~l~~~~~~gKvvl~~~  391 (392)
                      +.|+++|+++||+.+++++..||+||+|+
T Consensus       331 ~~~~l~~~~~A~~~~~~~~~~GKvVl~~~  359 (363)
T 4dvj_A          331 SPINAANLKQAHALVESGTARGKVVIEGF  359 (363)
T ss_dssp             CSCSHHHHHHHHHHHHHTCCCSEEEEECS
T ss_pred             cCCCHHHHHHHHHHHHhCCCceEEEEeCc
Confidence            24599999999999999999999999985

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}

Probab=100.00  E-value=1.4e-50  Score=386.20  Aligned_cols=288  Identities=24%  Similarity=0.390  Sum_probs=242.6

Q ss_pred             cceeEEEEcccCCcceEEEeccccCCCCCCCeEEEEEeEEecChHhHHhhcCCCCCCCCCCCCcCCCceeEEEEEeCCCC
Q 016265           82 SEMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQV  161 (392)
Q Consensus        82 ~~mka~v~~~~~~~~~l~~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~~~p~v~G~e~~G~V~~vG~~v  161 (392)
                      ++|||+++++  .++.++++ +.+.|+|++|||+|||.++|||++|++.+.|.++.  ..+|.++|||++|+|+++|++|
T Consensus         3 ~tMka~~~~~--~~~~l~~~-~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~--~~~p~i~G~e~~G~V~~vG~~v   77 (315)
T 3goh_A            3 EQHQVWAYQT--KTHSVTLN-SVDIPALAADDILVQNQAIGINPVDWKFIKANPIN--WSNGHVPGVDGAGVIVKVGAKV   77 (315)
T ss_dssp             CEEEEEEEET--TTTEEEEE-EEECCCCCTTEEEEEEEEEEECHHHHHHHHHCTTC--CCTTCCCCSEEEEEEEEECTTS
T ss_pred             cceEEEEEeC--CCCeeEEE-ecCCCCCCCCEEEEEEEEEecCHHHHHHHcCCCCc--CCCCCEeeeeeEEEEEEeCCCC
Confidence            3599999986  33458888 89999999999999999999999999999988643  4689999999999999999999


Q ss_pred             CCCCCCCEEEecccccccCCCCCCCcceeEEEecCCceeeCCCCCCHHhHhccchhHHHHHHHHHhcCCCCCCeEEEEcC
Q 016265          162 KEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLERTGFSAGKSILVLNG  241 (392)
Q Consensus       162 ~~~~vGdrV~~~~~~~~~~~~~~~G~~a~~~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~al~~~~~~~g~~VlI~Ga  241 (392)
                      ++|++||||++...      ...+|+|+||++++++.++++|+++++++||++++++.|||++++.+++++|++|||+|+
T Consensus        78 ~~~~vGdrV~~~~~------~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~al~~~~~~~g~~VlV~Ga  151 (315)
T 3goh_A           78 DSKMLGRRVAYHTS------LKRHGSFAEFTVLNTDRVMTLPDNLSFERAAALPCPLLTAWQAFEKIPLTKQREVLIVGF  151 (315)
T ss_dssp             CGGGTTCEEEEECC------TTSCCSSBSEEEEETTSEEECCTTSCHHHHHTSHHHHHHHHHHHTTSCCCSCCEEEEECC
T ss_pred             CCCCCCCEEEEeCC------CCCCcccccEEEEcHHHhccCcCCCCHHHHhhCccHHHHHHHHHhhcCCCCCCEEEEECC
Confidence            99999999998652      234799999999999999999999999999999999999999998889999999999997


Q ss_pred             CCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCCccccCCCCccEEEecCc--cHHHHHHhcccCCe
Q 016265          242 SGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFEDLPEKFDVVYDAIG--QCDRAVKAIKEGGT  319 (392)
Q Consensus       242 ~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~~~~~~~D~vid~~G--~~~~~~~~l~~~G~  319 (392)
                       |++|++++|+||.+ |++|++++ +++|+++++++|++++++  +  .+++.+++|++|||+|  ....++++++++|+
T Consensus       152 -G~vG~~a~qlak~~-Ga~Vi~~~-~~~~~~~~~~lGa~~v~~--d--~~~v~~g~Dvv~d~~g~~~~~~~~~~l~~~G~  224 (315)
T 3goh_A          152 -GAVNNLLTQMLNNA-GYVVDLVS-ASLSQALAAKRGVRHLYR--E--PSQVTQKYFAIFDAVNSQNAAALVPSLKANGH  224 (315)
T ss_dssp             -SHHHHHHHHHHHHH-TCEEEEEC-SSCCHHHHHHHTEEEEES--S--GGGCCSCEEEEECC-------TTGGGEEEEEE
T ss_pred             -CHHHHHHHHHHHHc-CCEEEEEE-ChhhHHHHHHcCCCEEEc--C--HHHhCCCccEEEECCCchhHHHHHHHhcCCCE
Confidence             99999999999995 99998888 999999999999999995  2  4455779999999998  35788999999999


Q ss_pred             EEEEcCCCCCC-------ceEEE-Ee-------ec-------HHHHHHHHHHHHCCCcccccCCCcccchhhHHHHHHHH
Q 016265          320 VVALTGAVTPP-------GFRFV-VT-------SN-------GEVLKKLNPYLESGKVKPIIDPKGPFPFSQVVEAFSYI  377 (392)
Q Consensus       320 iv~~g~~~~~~-------~~~~~-~~-------~~-------~~~~~~~~~~l~~g~l~~~~~~t~~~~l~~~~~A~~~l  377 (392)
                      ++.++......       .+.+. ..       ..       .+.++++++++++|++++.  ++++|||+|+++||+.+
T Consensus       225 ~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~--i~~~~~l~~~~~A~~~~  302 (315)
T 3goh_A          225 IICIQDRIPAPIDPAFTRTISYHEIALGALHDFGDRQDWQILMQQGEALLTLIAQGKMEIA--APDIFRFEQMIEALDHS  302 (315)
T ss_dssp             EEEECCC----------CCSEEEEECGGGHHHHCCHHHHHHHHHHHHHHHHHHHTTSSCCC--CCEEEEGGGHHHHHHHH
T ss_pred             EEEEeCCCCccccchhhhcceeeEEEeecccccCChhHHHHHHHHHHHHHHHHHCCCcccc--cceEecHHHHHHHHHHH
Confidence            99997643111       11111 10       11       1246889999999999864  56899999999999999


Q ss_pred             HhCCCCeeEEEEeC
Q 016265          378 ETNKATGKVVIHPI  391 (392)
Q Consensus       378 ~~~~~~gKvvl~~~  391 (392)
                      +  +..||+|++++
T Consensus       303 ~--~~~gKvvi~~~  314 (315)
T 3goh_A          303 E--QTKLKTVLTLN  314 (315)
T ss_dssp             H--HHCCCEEEESC
T ss_pred             H--hcCCcEEEEec
Confidence            8  66699999875

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}

Probab=100.00  E-value=4.8e-50  Score=387.37  Aligned_cols=296  Identities=31%  Similarity=0.478  Sum_probs=252.6

Q ss_pred             ceeEEEEcccC---CcceEEEeccccCCCCCCCeEEEEEeEEecChHhHHhhcCCCCCCCCCCCCcCCCceeEEEEEeCC
Q 016265           83 EMKAWLYGEYG---GVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGT  159 (392)
Q Consensus        83 ~mka~v~~~~~---~~~~l~~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~~~p~v~G~e~~G~V~~vG~  159 (392)
                      +|||++++++|   .++.++++ +++.|+|++|||+|||.++|||++|++.+.|.    ...+|.++|||++|+|+++|+
T Consensus         2 ~MkA~~~~~~G~~~~~~~l~~~-~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~----~~~~p~i~G~e~~G~V~~vG~   76 (346)
T 3fbg_A            2 SLKAIGFEQPFKLSDGNLFKTF-NLDIPEPKVHEILVKIQSISVNPVDTKQRLMD----VSKAPRVLGFDAIGVVESVGN   76 (346)
T ss_dssp             CEEEEEBSSCCCGGGCCCCEEE-EECCCCCCTTEEEEEEEEEEECHHHHHHTTSC----CSSSCBCCCCCEEEEEEEECT
T ss_pred             CcEEEEEEeccccCCCceeEec-cccCCCCCCCEEEEEEEEEEcCHHHHHHHhCC----CCCCCcCcCCccEEEEEEeCC
Confidence            69999999987   45678888 89999999999999999999999999999886    245789999999999999999


Q ss_pred             CCCCCCCCCEEEecccccccCCCCCCCcceeEEEecCCceeeCCCCCCHHhHhccchhHHHHHHHHH-hcCCC------C
Q 016265          160 QVKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLE-RTGFS------A  232 (392)
Q Consensus       160 ~v~~~~vGdrV~~~~~~~~~~~~~~~G~~a~~~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~al~-~~~~~------~  232 (392)
                      +|++|++||||++...      ...+|+|+||++++++.++++|+++++++|+.++++++|||+++. .++++      +
T Consensus        77 ~v~~~~~GdrV~~~~~------~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~~  150 (346)
T 3fbg_A           77 EVTMFNQGDIVYYSGS------PDQNGSNAEYQLINERLVAKAPKNISAEQAVSLPLTGITAYETLFDVFGISRNRNENE  150 (346)
T ss_dssp             TCCSCCTTCEEEECCC------TTSCCSSBSEEEEEGGGEEECCSSSCHHHHTTSHHHHHHHHHHHHTTSCCCSSHHHHT
T ss_pred             CCCcCCCCCEEEEcCC------CCCCcceeEEEEEChHHeEECCCCCCHHHhhhcchhHHHHHHHHHHhcCCccccccCC
Confidence            9999999999998532      234699999999999999999999999999999999999999994 67888      9


Q ss_pred             CCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCCcccc----CCCCccEEEecCcc--
Q 016265          233 GKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFED----LPEKFDVVYDAIGQ--  306 (392)
Q Consensus       233 g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~~----~~~~~D~vid~~G~--  306 (392)
                      |++|||+||+|++|++++|+|+. .|++|++++++++|+++++++|+++++|++++....    ..+++|++|||+|.  
T Consensus       151 g~~VlV~gg~G~vG~~a~qla~~-~Ga~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~g~Dvv~d~~g~~~  229 (346)
T 3fbg_A          151 GKTLLIINGAGGVGSIATQIAKA-YGLRVITTASRNETIEWTKKMGADIVLNHKESLLNQFKTQGIELVDYVFCTFNTDM  229 (346)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHH-TTCEEEEECCSHHHHHHHHHHTCSEEECTTSCHHHHHHHHTCCCEEEEEESSCHHH
T ss_pred             CCEEEEEcCCCHHHHHHHHHHHH-cCCEEEEEeCCHHHHHHHHhcCCcEEEECCccHHHHHHHhCCCCccEEEECCCchH
Confidence            99999999899999999999998 599999999999999999999999999987532221    24589999999983  


Q ss_pred             -HHHHHHhcccCCeEEEEcCCCCC--------CceEEEEe--e------------cHHHHHHHHHHHHCCCcccccCCCc
Q 016265          307 -CDRAVKAIKEGGTVVALTGAVTP--------PGFRFVVT--S------------NGEVLKKLNPYLESGKVKPIIDPKG  363 (392)
Q Consensus       307 -~~~~~~~l~~~G~iv~~g~~~~~--------~~~~~~~~--~------------~~~~~~~~~~~l~~g~l~~~~~~t~  363 (392)
                       ++.++++++++|+++.++....+        ..+.+...  .            ..+.++++++++++|++++.+  ++
T Consensus       230 ~~~~~~~~l~~~G~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~i--~~  307 (346)
T 3fbg_A          230 YYDDMIQLVKPRGHIATIVAFENDQDLNALKPKSLSFSHEFMFARPLNQTDDMIKHHEYLEDITNKVEQNIYQPTT--TK  307 (346)
T ss_dssp             HHHHHHHHEEEEEEEEESSCCSSCBCGGGGTTTTCEEEECCTTHHHHTTCTTTHHHHHHHHHHHHHHHTTSSCCCE--EE
T ss_pred             HHHHHHHHhccCCEEEEECCCCCCCccccccccceEEEEEEEecccccchhhHHHHHHHHHHHHHHHHCCCEECCc--cc
Confidence             58999999999999988764321        12222211  0            135688999999999998763  35


Q ss_pred             cc---chhhHHHHHHHHHhCCCCeeEEEEeCC
Q 016265          364 PF---PFSQVVEAFSYIETNKATGKVVIHPIP  392 (392)
Q Consensus       364 ~~---~l~~~~~A~~~l~~~~~~gKvvl~~~p  392 (392)
                      +|   +++++++||+.+++++..||+|+++++
T Consensus       308 ~~~~~~l~~~~~A~~~~~~g~~~GKvvl~~~~  339 (346)
T 3fbg_A          308 VIEGLTTENIYQAHQILESNTMIGKLVINLNE  339 (346)
T ss_dssp             EEESCCHHHHHHHHHHHHTTCCCSEEEEEC--
T ss_pred             eecCCCHHHHHHHHHHHhcCCcceEEEEecCC
Confidence            55   999999999999999999999999864

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*

Probab=100.00  E-value=4.3e-50  Score=387.57  Aligned_cols=299  Identities=25%  Similarity=0.299  Sum_probs=255.1

Q ss_pred             eeEEEEcccCCcceEEEeccccCCCCCCCeEEEEEeEEecChHhHHhhcCCCCCCCCCCCCcCCCceeEEEEEeCCCCCC
Q 016265           84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKE  163 (392)
Q Consensus        84 mka~v~~~~~~~~~l~~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~~~p~v~G~e~~G~V~~vG~~v~~  163 (392)
                      |||+++++++++  ++++ +++.|+|++|||||||.++|||++|++.++|.++.....+|.++|||++|+|+++|++|++
T Consensus         1 MkA~~~~~~g~~--l~~~-~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~p~i~G~e~~G~V~~vG~~v~~   77 (345)
T 3jv7_A            1 MKAVQYTEIGSE--PVVV-DIPTPTPGPGEILLKVTAAGLCHSDIFVMDMPAAQYAYGLPLTLGHEGVGTVAELGEGVTG   77 (345)
T ss_dssp             CEEEEECSTTSC--CEEE-ECCCCCCCTTCEEEEEEEEECCHHHHHHHHSCTTTCCSCSSEECCSEEEEEEEEECTTCCS
T ss_pred             CeEEEEcCCCCc--eEEE-EecCCCCCCCeEEEEEEEEeeCHHHHHHHcCCCCccCCCCCcccCcccEEEEEEECCCCCC
Confidence            899999998875  7777 8999999999999999999999999999999865444678999999999999999999999


Q ss_pred             CCCCCEEEecccccc-------------c----------CCCCCCCcceeEEEec-CCceeeCCCCCCHHhHhccchhHH
Q 016265          164 FKEGDEVYGDINEKA-------------L----------EGPKQFGSLAEYTAVE-ERLLAPKPKNLDFVQAAGLPLAIE  219 (392)
Q Consensus       164 ~~vGdrV~~~~~~~~-------------~----------~~~~~~G~~a~~~~v~-~~~~~~iP~~l~~~~aa~l~~~~~  219 (392)
                      |++||||++.....+             +          .+...+|+|+||++++ ++.++++|+ +++++||.+++++.
T Consensus        78 ~~vGdrV~~~~~~~cg~C~~c~~g~~~~c~~~~~~~~~~~g~~~~G~~aey~~v~~~~~~~~~p~-~~~~~aa~l~~~~~  156 (345)
T 3jv7_A           78 FGVGDAVAVYGPWGCGACHACARGRENYCTRAADLGITPPGLGSPGSMAEYMIVDSARHLVPIGD-LDPVAAAPLTDAGL  156 (345)
T ss_dssp             CCTTCEEEECCSCCCSSSHHHHTTCGGGCSSHHHHTCCCBTTTBCCSSBSEEEESCGGGEEECTT-CCHHHHGGGGTTTH
T ss_pred             CCCCCEEEEecCCCCCCChHHHCcCcCcCccccccccccCCcCCCceeeEEEEecchhceEeCCC-CCHHHhhhhhhhHH
Confidence            999999998532110             0          2344579999999999 999999999 99999999999999


Q ss_pred             HHHHHHHhc--CCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCCccccC----
Q 016265          220 TAYEGLERT--GFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFEDL----  293 (392)
Q Consensus       220 ta~~al~~~--~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~~~----  293 (392)
                      |||+++.+.  .+++|++|+|+| +|++|++++|+||.+.|++|++++.+++|+++++++|++++++++++..+++    
T Consensus       157 ta~~~l~~~~~~~~~g~~vlv~G-aG~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~v~~~t  235 (345)
T 3jv7_A          157 TPYHAISRVLPLLGPGSTAVVIG-VGGLGHVGIQILRAVSAARVIAVDLDDDRLALAREVGADAAVKSGAGAADAIRELT  235 (345)
T ss_dssp             HHHHHHHTTGGGCCTTCEEEEEC-CSHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHTTCSEEEECSTTHHHHHHHHH
T ss_pred             HHHHHHHHhccCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCCEEEcCCCcHHHHHHHHh
Confidence            999999875  899999999998 5999999999999864778888899999999999999999999876322221    


Q ss_pred             -CCCccEEEecCcc---HHHHHHhcccCCeEEEEcCCCC-CCce---------EEE--EeecHHHHHHHHHHHHCCCccc
Q 016265          294 -PEKFDVVYDAIGQ---CDRAVKAIKEGGTVVALTGAVT-PPGF---------RFV--VTSNGEVLKKLNPYLESGKVKP  357 (392)
Q Consensus       294 -~~~~D~vid~~G~---~~~~~~~l~~~G~iv~~g~~~~-~~~~---------~~~--~~~~~~~~~~~~~~l~~g~l~~  357 (392)
                       .+++|+||||+|.   ++.++++++++|+++.+|.... ...+         .+.  .....+.++++++++++|++++
T Consensus       236 ~g~g~d~v~d~~G~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~l~~~g~l~~  315 (345)
T 3jv7_A          236 GGQGATAVFDFVGAQSTIDTAQQVVAVDGHISVVGIHAGAHAKVGFFMIPFGASVVTPYWGTRSELMEVVALARAGRLDI  315 (345)
T ss_dssp             GGGCEEEEEESSCCHHHHHHHHHHEEEEEEEEECSCCTTCCEEESTTTSCTTCEEECCCSCCHHHHHHHHHHHHTTCCCC
T ss_pred             CCCCCeEEEECCCCHHHHHHHHHHHhcCCEEEEECCCCCCCCCcCHHHHhCCCEEEEEecCCHHHHHHHHHHHHcCCCce
Confidence             3489999999994   5899999999999999986542 1111         111  1234678999999999999987


Q ss_pred             ccCCCcccchhhHHHHHHHHHhCCCCeeEEEEe
Q 016265          358 IIDPKGPFPFSQVVEAFSYIETNKATGKVVIHP  390 (392)
Q Consensus       358 ~~~~t~~~~l~~~~~A~~~l~~~~~~gKvvl~~  390 (392)
                         ++++|+++|+++||+.+++++..||+||+|
T Consensus       316 ---~~~~~~l~~~~~A~~~~~~~~~~Gkvvv~p  345 (345)
T 3jv7_A          316 ---HTETFTLDEGPAAYRRLREGSIRGRGVVVP  345 (345)
T ss_dssp             ---CEEEECSTTHHHHHHHHHHTCCSSEEEECC
T ss_pred             ---EEEEEcHHHHHHHHHHHHcCCCceeEEeCC
Confidence               348999999999999999999999999975

>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A*

Probab=100.00  E-value=2e-49  Score=386.42  Aligned_cols=303  Identities=25%  Similarity=0.331  Sum_probs=248.4

Q ss_pred             CCCCCcceeEEEEcccCCcceEEEeccccCCCCCCCeEEEEEeEEecChHhHHhhcCCCCCCCCCCCCcCCCceeEEEEE
Q 016265           77 VGTVPSEMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVK  156 (392)
Q Consensus        77 ~~~~p~~mka~v~~~~~~~~~l~~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~~~p~v~G~e~~G~V~~  156 (392)
                      ++.||.+|||+++++++.   ++++++++.|+|++|||||||.++|||++|++.+.|.     ..+|.++|||++|+|++
T Consensus         5 tm~~p~~mkA~v~~~~~~---l~~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~-----~~~p~v~G~e~~G~V~~   76 (371)
T 3gqv_A            5 PFIPPPQQTALTVNDHDE---VTVWNAAPCPMLPRDQVYVRVEAVAINPSDTSMRGQF-----ATPWAFLGTDYAGTVVA   76 (371)
T ss_dssp             CCCCCSCEEEEEECTTSC---EEEEEEECCCCCCTTSEEEEEEEEECCGGGGC----------CCTTSCCCSEEEEEEEE
T ss_pred             CCCCchhceeEEEcCCCc---eEEeccCCCCCCCCCEEEEEEEEEEcCHHHHHHhhcC-----CCCCccCccccEEEEEE
Confidence            366899999999998876   6775468999999999999999999999999988763     23589999999999999


Q ss_pred             eCCCCCCCCCCCEEEecccccccCCCCCCCcceeEEEecCCceeeCCCCCCHHhHhccchhHHHHHHHHH-h-cCC----
Q 016265          157 VGTQVKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLE-R-TGF----  230 (392)
Q Consensus       157 vG~~v~~~~vGdrV~~~~~~~~~~~~~~~G~~a~~~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~al~-~-~~~----  230 (392)
                      +|++|++|++||||++.+..+. .+...+|+|+||++++++.++++|+++++++|+.+++++.|||+++. . .++    
T Consensus        77 vG~~v~~~~~GdrV~~~~~~~~-~~~~~~G~~aey~~v~~~~~~~~P~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~  155 (371)
T 3gqv_A           77 VGSDVTHIQVGDRVYGAQNEMC-PRTPDQGAFSQYTVTRGRVWAKIPKGLSFEQAAALPAGISTAGLAMKLLGLPLPSPS  155 (371)
T ss_dssp             ECTTCCSCCTTCEEEEECCTTC-TTCTTCCSSBSEEECCTTCEEECCTTCCHHHHHTSHHHHHHHHHHHHHHTCCCCCSS
T ss_pred             eCCCCCCCCCCCEEEEeccCCC-CCCCCCCcCcCeEEEchhheEECCCCCCHHHHhhhhhhHHHHHHHHHhhccCCCCCc
Confidence            9999999999999998764322 23345799999999999999999999999999999999999999995 4 342    


Q ss_pred             -------CCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCCccccC-----CCCcc
Q 016265          231 -------SAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFEDL-----PEKFD  298 (392)
Q Consensus       231 -------~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~~~-----~~~~D  298 (392)
                             ++|++|||+|++|++|++++|+||. .|++|+++. +++|+++++++|+++++|+++.++.+.     .+++|
T Consensus       156 ~~~~~~~~~g~~VlV~Ga~G~vG~~a~qla~~-~Ga~Vi~~~-~~~~~~~~~~lGa~~vi~~~~~~~~~~v~~~t~g~~d  233 (371)
T 3gqv_A          156 ADQPPTHSKPVYVLVYGGSTATATVTMQMLRL-SGYIPIATC-SPHNFDLAKSRGAEEVFDYRAPNLAQTIRTYTKNNLR  233 (371)
T ss_dssp             CSSCCCCSSCCEEEEESTTSHHHHHHHHHHHH-TTCEEEEEE-CGGGHHHHHHTTCSEEEETTSTTHHHHHHHHTTTCCC
T ss_pred             cccccccCCCcEEEEECCCcHHHHHHHHHHHH-CCCEEEEEe-CHHHHHHHHHcCCcEEEECCCchHHHHHHHHccCCcc
Confidence                   8999999999889999999999998 599888775 789999999999999999988765431     34699


Q ss_pred             EEEecCcc---HHHHHHhc-ccCCeEEEEcCCCC----CCceEEE-------------------Eeec-------HHHHH
Q 016265          299 VVYDAIGQ---CDRAVKAI-KEGGTVVALTGAVT----PPGFRFV-------------------VTSN-------GEVLK  344 (392)
Q Consensus       299 ~vid~~G~---~~~~~~~l-~~~G~iv~~g~~~~----~~~~~~~-------------------~~~~-------~~~~~  344 (392)
                      ++|||+|.   ++.+++++ +++|+++.+|....    ...+...                   ....       .++++
T Consensus       234 ~v~d~~g~~~~~~~~~~~l~~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~g~~~~~~~~~~~~~~~~~~~  313 (371)
T 3gqv_A          234 YALDCITNVESTTFCFAAIGRAGGHYVSLNPFPEHAATRKMVTTDWTLGPTIFGEGSTWPAPYGRPGSEEERQFGEDLWR  313 (371)
T ss_dssp             EEEESSCSHHHHHHHHHHSCTTCEEEEESSCCCC---CCSCEEEEECCGGGGGTSCBSCSTTTCBCCCHHHHHHHHHHHH
T ss_pred             EEEECCCchHHHHHHHHHhhcCCCEEEEEecCccccccccccceeeeeeeeeccccccccccccccccHHHHHHHHHHHH
Confidence            99999984   68899999 59999999985431    1111111                   0011       12356


Q ss_pred             HHHHHHHCCCcccccCCCcccchhhHHHHHHHHHhCCCCee-EEEEe
Q 016265          345 KLNPYLESGKVKPIIDPKGPFPFSQVVEAFSYIETNKATGK-VVIHP  390 (392)
Q Consensus       345 ~~~~~l~~g~l~~~~~~t~~~~l~~~~~A~~~l~~~~~~gK-vvl~~  390 (392)
                      ++++++++|++++....++.|+|+++++||+.+++++..|| +|+++
T Consensus       314 ~~~~l~~~g~l~~~~~~~~~~~l~~~~~A~~~l~~g~~~Gkkvvv~~  360 (371)
T 3gqv_A          314 IAGQLVEDGRLVHHPLRVVQGGFDHIKQGMELVRKGELSGEKLVVRL  360 (371)
T ss_dssp             HHHHHHHTTSSCCCCEEEEEECHHHHHHHHHHHHTTCCSSCEEEEEE
T ss_pred             HHHHHHHCCeeeCCcCeecCCcHHHHHHHHHHHHcCCCceEEEEEEe
Confidence            88899999999998777788999999999999999998885 55554

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=100.00  E-value=4.4e-50  Score=388.50  Aligned_cols=299  Identities=22%  Similarity=0.250  Sum_probs=254.6

Q ss_pred             eeEEEEcccCCcceEEEeccccCCCCCCCeEEEEEeEEecChHhHH-hhcCCCCCCCCCCCCcCCCceeEEEEEeCCCCC
Q 016265           84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGK-RRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVK  162 (392)
Q Consensus        84 mka~v~~~~~~~~~l~~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~-~~~g~~~~~~~~~p~v~G~e~~G~V~~vG~~v~  162 (392)
                      |||++++++++   ++++ ++|.|+|++|||+|||.++|||++|++ ++.|.++   ..+|.++|||++|+|+++|++|+
T Consensus         1 MkA~~~~~~~~---~~~~-e~~~P~~~~~eVlVkv~a~gi~~~D~~~~~~g~~~---~~~p~v~G~E~~G~V~~vG~~v~   73 (352)
T 3fpc_A            1 MKGFAMLSIGK---VGWI-EKEKPAPGPFDAIVRPLAVAPCTSDIHTVFEGAIG---ERHNMILGHEAVGEVVEVGSEVK   73 (352)
T ss_dssp             CEEEEEEETTE---EEEE-ECCCCCCCTTCEEEEEEEEECCHHHHHHHHSCTTC---CCSSEECCCEEEEEEEEECTTCC
T ss_pred             CeEEEEccCCC---ceEE-eCCCCCCCCCeEEEEeCEEeEcccchHHHhCCCCC---CCCCcccCCcceEEEEEECCCCC
Confidence            89999999887   6777 899999999999999999999999999 6688764   35789999999999999999999


Q ss_pred             CCCCCCEEEeccccc---------------------ccCCCCCCCcceeEEEecCC--ceeeCCCCCCHHhHhccchhHH
Q 016265          163 EFKEGDEVYGDINEK---------------------ALEGPKQFGSLAEYTAVEER--LLAPKPKNLDFVQAAGLPLAIE  219 (392)
Q Consensus       163 ~~~vGdrV~~~~~~~---------------------~~~~~~~~G~~a~~~~v~~~--~~~~iP~~l~~~~aa~l~~~~~  219 (392)
                      +|++||||++.....                     +..+...+|+|+||+++++.  .++++|+++++++|+.++.++.
T Consensus        74 ~~~vGdrV~~~~~~~c~~c~~c~~g~~~~~~~~~~~~~~~~~~~G~~aey~~v~~~~~~~~~iP~~~~~~~aa~~~~~~~  153 (352)
T 3fpc_A           74 DFKPGDRVVVPAITPDWRTSEVQRGYHQHSGGMLAGWKFSNVKDGVFGEFFHVNDADMNLAHLPKEIPLEAAVMIPDMMT  153 (352)
T ss_dssp             SCCTTCEEEECSBCCCSSSHHHHTTCGGGTTSTTTTBCBTTTBCCSSBSCEEESSHHHHCEECCTTSCHHHHTTTTTHHH
T ss_pred             cCCCCCEEEEccccCCCCchhhcCCCcCCccccccccccccCCCCcccceEEeccccCeEEECCCCCCHHHHhhccchhH
Confidence            999999999643110                     01233457999999999976  8999999999999999999999


Q ss_pred             HHHHHHHhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCC-eEEEEeCCcccHHHHHhcCCcEEEeCCCCccccC-----
Q 016265          220 TAYEGLERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGA-SRVAATSSTRNLEFLKSLGADLAIDYTKDNFEDL-----  293 (392)
Q Consensus       220 ta~~al~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~-~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~~~-----  293 (392)
                      |||++++.+++++|++|||+| +|++|++++|+||+ .|+ +|++++.+++|+++++++|+++++|+++.++.+.     
T Consensus       154 ta~~al~~~~~~~g~~VlV~G-aG~vG~~a~qla~~-~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~v~~~t  231 (352)
T 3fpc_A          154 TGFHGAELANIKLGDTVCVIG-IGPVGLMSVAGANH-LGAGRIFAVGSRKHCCDIALEYGATDIINYKNGDIVEQILKAT  231 (352)
T ss_dssp             HHHHHHHHTTCCTTCCEEEEC-CSHHHHHHHHHHHT-TTCSSEEEECCCHHHHHHHHHHTCCEEECGGGSCHHHHHHHHT
T ss_pred             HHHHHHHhcCCCCCCEEEEEC-CCHHHHHHHHHHHH-cCCcEEEEECCCHHHHHHHHHhCCceEEcCCCcCHHHHHHHHc
Confidence            999999999999999999998 79999999999998 499 7888888999999999999999999977665431     


Q ss_pred             -CCCccEEEecCcc---HHHHHHhcccCCeEEEEcCCCCCCce--------------EEEEe---ecHHHHHHHHHHHHC
Q 016265          294 -PEKFDVVYDAIGQ---CDRAVKAIKEGGTVVALTGAVTPPGF--------------RFVVT---SNGEVLKKLNPYLES  352 (392)
Q Consensus       294 -~~~~D~vid~~G~---~~~~~~~l~~~G~iv~~g~~~~~~~~--------------~~~~~---~~~~~~~~~~~~l~~  352 (392)
                       .+++|+|||++|.   ++.++++++++|+++.+|.......+              .+...   .....++++++++++
T Consensus       232 ~g~g~D~v~d~~g~~~~~~~~~~~l~~~G~~v~~G~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~l~~~  311 (352)
T 3fpc_A          232 DGKGVDKVVIAGGDVHTFAQAVKMIKPGSDIGNVNYLGEGDNIDIPRSEWGVGMGHKHIHGGLCPGGRLRMERLIDLVFY  311 (352)
T ss_dssp             TTCCEEEEEECSSCTTHHHHHHHHEEEEEEEEECCCCCSCSEEEEETTTTGGGTBCEEEEEBCCCCHHHHHHHHHHHHHT
T ss_pred             CCCCCCEEEECCCChHHHHHHHHHHhcCCEEEEecccCCCCceecchhHhhhhccccEEEEeeccCchhHHHHHHHHHHc
Confidence             3479999999984   68999999999999999865422111              11111   225679999999999


Q ss_pred             CCcccccCCCcccc-hhhHHHHHHHHHhCCCC-eeEEEEeC
Q 016265          353 GKVKPIIDPKGPFP-FSQVVEAFSYIETNKAT-GKVVIHPI  391 (392)
Q Consensus       353 g~l~~~~~~t~~~~-l~~~~~A~~~l~~~~~~-gKvvl~~~  391 (392)
                      |++++...++++|+ |+|+++||+.+++++.. +|+||++.
T Consensus       312 g~i~~~~~i~~~~~gl~~~~~A~~~~~~~~~~~~Kvvi~~~  352 (352)
T 3fpc_A          312 KRVDPSKLVTHVFRGFDNIEKAFMLMKDKPKDLIKPVVILA  352 (352)
T ss_dssp             TSCCGGGGEEEEEESTTHHHHHHHHHHSCCTTCSEEEEECC
T ss_pred             CCCChhHhheeeCCCHHHHHHHHHHHHhCCCCcEEEEEEeC
Confidence            99998777789999 99999999999987655 89999874

>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A

Probab=100.00  E-value=2e-49  Score=384.63  Aligned_cols=301  Identities=23%  Similarity=0.349  Sum_probs=250.7

Q ss_pred             CCCCCcceeEEEEcccCCc-ceEEEeccccCCCCCCCeEEEEEeEEecChHhHHhhcCCCCCCCCCCCCcCCCceeEEEE
Q 016265           77 VGTVPSEMKAWLYGEYGGV-DVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVV  155 (392)
Q Consensus        77 ~~~~p~~mka~v~~~~~~~-~~l~~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~~~p~v~G~e~~G~V~  155 (392)
                      .++||.+|||+++.+++.+ +.++++ +.+.|+|++|||+|||.++|||++|++.+.|.++. ...+|.++|||++|+|+
T Consensus        20 ~~~m~~~mka~~~~~~g~~~~~l~~~-~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~-~~~~P~v~G~E~~G~V~   97 (357)
T 1zsy_A           20 FQSMPARVRALVYGHHGDPAKVVELK-NLELAAVRGSDVRVKMLAAPINPSDINMIQGNYGL-LPELPAVGGNEGVAQVV   97 (357)
T ss_dssp             CCCCCCCEEEEEESSSSCHHHHEEEE-EECCCCCCTTEEEEEEEEEECCHHHHHHHHTCSSC-CCCSSEECCSCCEEEEE
T ss_pred             hhhCchhhEEEEEecCCCccceEEEe-eccCCCCCCCEEEEEEEECCCCHHHhhHhcCCCCC-CCCCCccccceEEEEEE
Confidence            3468889999999998875 347888 89999999999999999999999999999997642 23578999999999999


Q ss_pred             EeCCCCCCCCCCCEEEecccccccCCCCCCCcceeEEEecCCceeeCCCCCCHHhHhccchhHHHHHHHHH-hcCCCCCC
Q 016265          156 KVGTQVKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLE-RTGFSAGK  234 (392)
Q Consensus       156 ~vG~~v~~~~vGdrV~~~~~~~~~~~~~~~G~~a~~~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~al~-~~~~~~g~  234 (392)
                      ++|++|++|++||||++...        .+|+|+||++++++.++++|+++++++||+++++++|||+++. .+++++|+
T Consensus        98 ~vG~~v~~~~vGdrV~~~~~--------~~G~~aey~~v~~~~~~~iP~~l~~~~Aa~l~~~~~ta~~~l~~~~~~~~g~  169 (357)
T 1zsy_A           98 AVGSNVTGLKPGDWVIPANA--------GLGTWRTEAVFSEEALIQVPSDIPLQSAATLGVNPCTAYRMLMDFEQLQPGD  169 (357)
T ss_dssp             EECTTCCSCCTTCEEEESSS--------CSCCSBSEEEEEGGGEEEECSSSCHHHHHHTTSHHHHHHHHHHHSSCCCTTC
T ss_pred             EeCCCCCCCCCCCEEEEcCC--------CCccceeEEecCHHHcEECCCCCCHHHHhhhcccHHHHHHHHHHHhccCCCC
Confidence            99999999999999998642        2599999999999999999999999999999999999999995 47899999


Q ss_pred             eEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcc----cHHHHHhcCCcEEEeCCC---CccccCC---CCccEEEecC
Q 016265          235 SILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTR----NLEFLKSLGADLAIDYTK---DNFEDLP---EKFDVVYDAI  304 (392)
Q Consensus       235 ~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~----~~~~~~~~G~~~vi~~~~---~~~~~~~---~~~D~vid~~  304 (392)
                      +|||+|++|++|++++|+||.+ |+++|+++++++    ++++++++|+++++|+.+   ..+.+..   .++|+||||+
T Consensus       170 ~VlV~Ga~G~vG~~aiqlak~~-Ga~vi~~~~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~~~Dvvid~~  248 (357)
T 1zsy_A          170 SVIQNASNSGVGQAVIQIAAAL-GLRTINVVRDRPDIQKLSDRLKSLGAEHVITEEELRRPEMKNFFKDMPQPRLALNCV  248 (357)
T ss_dssp             EEEESSTTSHHHHHHHHHHHHH-TCEEEEEECCCSCHHHHHHHHHHTTCSEEEEHHHHHSGGGGGTTSSSCCCSEEEESS
T ss_pred             EEEEeCCcCHHHHHHHHHHHHc-CCEEEEEecCccchHHHHHHHHhcCCcEEEecCcchHHHHHHHHhCCCCceEEEECC
Confidence            9999998899999999999995 999988876543    567889999999998753   2233332   2599999999


Q ss_pred             cc--HHHHHHhcccCCeEEEEcCCCC-CC----------ceEEEEee------------cHHHHHHHHHHHHCCCccccc
Q 016265          305 GQ--CDRAVKAIKEGGTVVALTGAVT-PP----------GFRFVVTS------------NGEVLKKLNPYLESGKVKPII  359 (392)
Q Consensus       305 G~--~~~~~~~l~~~G~iv~~g~~~~-~~----------~~~~~~~~------------~~~~~~~~~~~l~~g~l~~~~  359 (392)
                      |.  ...++++++++|+++.+|.... +.          .+.+....            ..+.++++++++++|++++.+
T Consensus       249 g~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~~  328 (357)
T 1zsy_A          249 GGKSSTELLRQLARGGTMVTYGGMAKQPVVASVSLLIFKDLKLRGFWLSQWKKDHSPDQFKELILTLCDLIRRGQLTAPA  328 (357)
T ss_dssp             CHHHHHHHHTTSCTTCEEEECCCCTTCCBCCCHHHHHHSCCEEEECCHHHHHHHSCHHHHHHHHHHHHHHHHTTSSCCCC
T ss_pred             CcHHHHHHHHhhCCCCEEEEEecCCCCCCCCCHHHHHhcCceEEEEEcchhcccCCHHHHHHHHHHHHHHHHcCCCcCcc
Confidence            93  4678999999999999975431 11          12222111            124578899999999998763


Q ss_pred             CCCcccchhhHHHHHHHHHhCCCCeeEEEEe
Q 016265          360 DPKGPFPFSQVVEAFSYIETNKATGKVVIHP  390 (392)
Q Consensus       360 ~~t~~~~l~~~~~A~~~l~~~~~~gKvvl~~  390 (392)
                        .++|+|+|+++||+.+.+++..||+|+++
T Consensus       329 --~~~~~l~~~~~A~~~~~~~~~~gKvvl~~  357 (357)
T 1zsy_A          329 --CSQVPLQDYQSALEASMKPFISSKQILTM  357 (357)
T ss_dssp             --EEEEEGGGHHHHHHHHTSSSCSSEEEEEC
T ss_pred             --ceEEcHHHHHHHHHHHHhCCCCCcEEEeC
Confidence              38999999999999999888889999975

>4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase; 2.10A {Homo sapiens}

Probab=100.00  E-value=6.9e-50  Score=386.69  Aligned_cols=294  Identities=26%  Similarity=0.408  Sum_probs=245.3

Q ss_pred             cceeEEEEcccCCcceEEEeccccCCCCCCCeEEEEEeEEecChHhHHhhcCCCCCCCCCCCCcCCCceeEEEEEeCCCC
Q 016265           82 SEMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQV  161 (392)
Q Consensus        82 ~~mka~v~~~~~~~~~l~~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~~~p~v~G~e~~G~V~~vG~~v  161 (392)
                      .+|||+++++++.++.++++ +.+.|+|++|||+|||.++|||++|++.+.|.++. ...+|.++|||++|+|+++|++|
T Consensus         2 m~mka~~~~~~g~~~~l~~~-~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~-~~~~p~v~G~e~~G~V~~vG~~v   79 (349)
T 4a27_A            2 MEMRAVVLAGFGGLNKLRLF-RKAMPEPQDGELKIRVKACGLNFIDLMVRQGNIDN-PPKTPLVPGFECSGIVEALGDSV   79 (349)
T ss_dssp             CCEEEEEECSSSSGGGEEEE-EECCCCCCTTEEEEEEEEEEECHHHHHHHHTCSSS-CCCSSBCCCSEEEEEEEEECTTC
T ss_pred             ceeEEEEEccCCCcceeEEE-ecCCCCCCCCEEEEEEEEEecCHHHHHHhCCCcCC-CCCCCccccceeEEEEEEeCCCC
Confidence            46999999999987779998 89999999999999999999999999999998642 35689999999999999999999


Q ss_pred             CCCCCCCEEEecccccccCCCCCCCcceeEEEecCCceeeCCCCCCHHhHhccchhHHHHHHHH-HhcCCCCCCeEEEEc
Q 016265          162 KEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGL-ERTGFSAGKSILVLN  240 (392)
Q Consensus       162 ~~~~vGdrV~~~~~~~~~~~~~~~G~~a~~~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~al-~~~~~~~g~~VlI~G  240 (392)
                      ++|++||||++..         .+|+|+||++++++.++++|+++++++||++++++.|||+++ +.+++++|++|||+|
T Consensus        80 ~~~~~GdrV~~~~---------~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~G  150 (349)
T 4a27_A           80 KGYEIGDRVMAFV---------NYNAWAEVVCTPVEFVYKIPDDMSFSEAAAFPMNFVTAYVMLFEVANLREGMSVLVHS  150 (349)
T ss_dssp             CSCCTTCEEEEEC---------SSCCSBSEEEEEGGGEEECCTTSCHHHHHTSHHHHHHHHHHHHTTSCCCTTCEEEESS
T ss_pred             CCCCCCCEEEEec---------CCCcceEEEEecHHHeEECCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEc
Confidence            9999999999865         269999999999999999999999999999999999999999 568999999999999


Q ss_pred             CCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCCcccc-----CCCCccEEEecCc--cHHHHHHh
Q 016265          241 GSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFED-----LPEKFDVVYDAIG--QCDRAVKA  313 (392)
Q Consensus       241 a~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~~-----~~~~~D~vid~~G--~~~~~~~~  313 (392)
                      ++|++|++++|+||.+.+++|+.++ +++|++.++ +|+++++| .+.++.+     ..+++|+||||+|  .++.++++
T Consensus       151 a~G~vG~~a~qla~~~g~~~V~~~~-~~~~~~~~~-~ga~~~~~-~~~~~~~~~~~~~~~g~Dvv~d~~g~~~~~~~~~~  227 (349)
T 4a27_A          151 AGGGVGQAVAQLCSTVPNVTVFGTA-STFKHEAIK-DSVTHLFD-RNADYVQEVKRISAEGVDIVLDCLCGDNTGKGLSL  227 (349)
T ss_dssp             TTSHHHHHHHHHHTTSTTCEEEEEE-CGGGHHHHG-GGSSEEEE-TTSCHHHHHHHHCTTCEEEEEEECC-------CTT
T ss_pred             CCcHHHHHHHHHHHHcCCcEEEEeC-CHHHHHHHH-cCCcEEEc-CCccHHHHHHHhcCCCceEEEECCCchhHHHHHHH
Confidence            8899999999999984234555554 778888888 99999999 5555432     2468999999998  35889999


Q ss_pred             cccCCeEEEEcCCCCC----C-----------------------ceEEEEee-------------cHHHHHHHHHHHHCC
Q 016265          314 IKEGGTVVALTGAVTP----P-----------------------GFRFVVTS-------------NGEVLKKLNPYLESG  353 (392)
Q Consensus       314 l~~~G~iv~~g~~~~~----~-----------------------~~~~~~~~-------------~~~~~~~~~~~l~~g  353 (392)
                      ++++|+++.+|.....    .                       ...+....             ..+.++++++++++|
T Consensus       228 l~~~G~~v~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g  307 (349)
T 4a27_A          228 LKPLGTYILYGSSNMVTGETKSFFSFAKSWWQVEKVNPIKLYEENKVIAGFSLLNLLFKQGRAGLIRGVVEKLIGLYNQK  307 (349)
T ss_dssp             EEEEEEEEEEC-------------------------CHHHHHHHTCEEEEECHHHHHHTSCCHHHHHHHHHHHHHHHHTT
T ss_pred             hhcCCEEEEECCCcccccccccccccccccccccccCHHHHhhcCceEEEEeehheeccccchHHHHHHHHHHHHHHHCC
Confidence            9999999999864310    0                       00111100             156789999999999


Q ss_pred             CcccccCCCcccchhhHHHHHHHHHhCCCCeeEEEEeC
Q 016265          354 KVKPIIDPKGPFPFSQVVEAFSYIETNKATGKVVIHPI  391 (392)
Q Consensus       354 ~l~~~~~~t~~~~l~~~~~A~~~l~~~~~~gKvvl~~~  391 (392)
                      ++++.  ++++|+++|+++||+.+++++..||+||+++
T Consensus       308 ~l~~~--i~~~~~l~~~~~A~~~l~~~~~~GKvvi~~~  343 (349)
T 4a27_A          308 KIKPV--VDSLWALEEVKEAMQRIHDRGNIGKLILDVE  343 (349)
T ss_dssp             SCCCC--EEEEECGGGHHHHHHHHHTTCCSSEEEEETT
T ss_pred             Ccccc--ccceECHHHHHHHHHHHHhCCCCceEEEecC
Confidence            99875  4589999999999999999999999999875

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=100.00  E-value=6.9e-50  Score=388.30  Aligned_cols=302  Identities=23%  Similarity=0.289  Sum_probs=255.3

Q ss_pred             CCCcceeEEEEcccCCcceEEEecc--ccCCCCCCCeEEEEEeEEecChHhHHhhcCCCCCCCCCCCCcCCCceeEEEEE
Q 016265           79 TVPSEMKAWLYGEYGGVDVLKFDEK--VTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVK  156 (392)
Q Consensus        79 ~~p~~mka~v~~~~~~~~~l~~~~~--~~~p~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~~~p~v~G~e~~G~V~~  156 (392)
                      .+|.+|||+++++++..  ++++ +  ++.|+|++|||||||.++|||++|++.+.|.++.  ..+|.++|||++|+|++
T Consensus         2 ~~p~~mka~~~~~~~~~--l~~~-~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~--~~~p~v~GhE~~G~V~~   76 (360)
T 1piw_A            2 SYPEKFEGIAIQSHEDW--KNPK-KTKYDPKPFYDHDIDIKIEACGVCGSDIHCAAGHWGN--MKMPLVVGHEIVGKVVK   76 (360)
T ss_dssp             CTTTCEEEEEECCSSST--TSCE-EEEECCCCCCTTEEEEEEEEEEECHHHHHHHTTTTSC--CCSSEECCCCEEEEEEE
T ss_pred             CCChheEEEEEecCCCC--eeEE-eccccCCCCCCCeEEEEEEEeccchhhHHHhcCCCCC--CCCCcccCcCceEEEEE
Confidence            47888999999988743  5556 7  8999999999999999999999999999987642  45789999999999999


Q ss_pred             eCCCCC-CCCCCCEEEecc-----ccc----------c-----cC------CCCCCCcceeEEEecCCceeeCCCCCCHH
Q 016265          157 VGTQVK-EFKEGDEVYGDI-----NEK----------A-----LE------GPKQFGSLAEYTAVEERLLAPKPKNLDFV  209 (392)
Q Consensus       157 vG~~v~-~~~vGdrV~~~~-----~~~----------~-----~~------~~~~~G~~a~~~~v~~~~~~~iP~~l~~~  209 (392)
                      +|++|+ +|++||||+...     ..+          +     ..      |...+|+|+||++++++.++++|++++++
T Consensus        77 vG~~v~~~~~~GdrV~~~~~~~~cg~C~~C~~g~~~~C~~~~~~~~~~~~~g~~~~G~~aey~~v~~~~~~~iP~~~~~~  156 (360)
T 1piw_A           77 LGPKSNSGLKVGQRVGVGAQVFSCLECDRCKNDNEPYCTKFVTTYSQPYEDGYVSQGGYANYVRVHEHFVVPIPENIPSH  156 (360)
T ss_dssp             ECTTCCSSCCTTCEEEECSEEECCSCSHHHHTTCGGGCTTCEESSSCBCTTSCBCCCSSBSEEEEEGGGEEECCTTSCHH
T ss_pred             eCCCCCCCCCCCCEEEEecCCCCCCCChhhcCCCcccCcchhhccccccCCCccCCCcceeEEEEchhheEECCCCCCHH
Confidence            999999 999999995421     000          0     01      33357999999999999999999999999


Q ss_pred             hHhccchhHHHHHHHHHhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCC-
Q 016265          210 QAAGLPLAIETAYEGLERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKD-  288 (392)
Q Consensus       210 ~aa~l~~~~~ta~~al~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~-  288 (392)
                      +||.+++++.|||+++.++++++|++|||+|+ |++|++++|+||.+ |++|++++++++|+++++++|+++++|+.+. 
T Consensus       157 ~aa~l~~~~~ta~~~l~~~~~~~g~~VlV~Ga-G~vG~~~~qlak~~-Ga~Vi~~~~~~~~~~~~~~lGa~~v~~~~~~~  234 (360)
T 1piw_A          157 LAAPLLCGGLTVYSPLVRNGCGPGKKVGIVGL-GGIGSMGTLISKAM-GAETYVISRSSRKREDAMKMGADHYIATLEEG  234 (360)
T ss_dssp             HHGGGGTHHHHHHHHHHHTTCSTTCEEEEECC-SHHHHHHHHHHHHH-TCEEEEEESSSTTHHHHHHHTCSEEEEGGGTS
T ss_pred             HhhhhhhhHHHHHHHHHHcCCCCCCEEEEECC-CHHHHHHHHHHHHC-CCEEEEEcCCHHHHHHHHHcCCCEEEcCcCch
Confidence            99999999999999998899999999999996 99999999999995 9999899999999999999999999998765 


Q ss_pred             ccc-cCCCCccEEEecCcc-----HHHHHHhcccCCeEEEEcCCCCCC-ceEE----------EE--eecHHHHHHHHHH
Q 016265          289 NFE-DLPEKFDVVYDAIGQ-----CDRAVKAIKEGGTVVALTGAVTPP-GFRF----------VV--TSNGEVLKKLNPY  349 (392)
Q Consensus       289 ~~~-~~~~~~D~vid~~G~-----~~~~~~~l~~~G~iv~~g~~~~~~-~~~~----------~~--~~~~~~~~~~~~~  349 (392)
                      ++. .+.+++|+|||++|.     ++.++++++++|+++.+|.... . .++.          ..  ....+.+++++++
T Consensus       235 ~~~~~~~~~~D~vid~~g~~~~~~~~~~~~~l~~~G~iv~~g~~~~-~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~l  313 (360)
T 1piw_A          235 DWGEKYFDTFDLIVVCASSLTDIDFNIMPKAMKVGGRIVSISIPEQ-HEMLSLKPYGLKAVSISYSALGSIKELNQLLKL  313 (360)
T ss_dssp             CHHHHSCSCEEEEEECCSCSTTCCTTTGGGGEEEEEEEEECCCCCS-SCCEEECGGGCBSCEEEECCCCCHHHHHHHHHH
T ss_pred             HHHHHhhcCCCEEEECCCCCcHHHHHHHHHHhcCCCEEEEecCCCC-ccccCHHHHHhCCeEEEEEecCCHHHHHHHHHH
Confidence            543 334689999999875     4789999999999999986543 1 2221          11  1236789999999


Q ss_pred             HHCCCcccccCCCcccchhh--HHHHHHHHHhCCCCeeEEEEeC
Q 016265          350 LESGKVKPIIDPKGPFPFSQ--VVEAFSYIETNKATGKVVIHPI  391 (392)
Q Consensus       350 l~~g~l~~~~~~t~~~~l~~--~~~A~~~l~~~~~~gKvvl~~~  391 (392)
                      +++|++++.  + ++|+++|  +++||+.+++++..||+|+++.
T Consensus       314 ~~~g~l~~~--i-~~~~l~~~~~~~A~~~~~~~~~~gKvvi~~~  354 (360)
T 1piw_A          314 VSEKDIKIW--V-ETLPVGEAGVHEAFERMEKGDVRYRFTLVGY  354 (360)
T ss_dssp             HHHTTCCCC--E-EEEESSHHHHHHHHHHHHHTCCSSEEEEECC
T ss_pred             HHhCCCcce--E-EEEeccHhHHHHHHHHHHCCCCceEEEEecC
Confidence            999999876  3 7999999  9999999999988899999874

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}

Probab=100.00  E-value=8e-50  Score=385.68  Aligned_cols=297  Identities=20%  Similarity=0.250  Sum_probs=251.1

Q ss_pred             eeEEEEcccCCcceEEEeccccCCC-CCCCeEEEEEeEEecChHhHHhhcCCCCCCCCCCCCcCCCceeEEEEEeCCCCC
Q 016265           84 MKAWLYGEYGGVDVLKFDEKVTVPQ-VKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVK  162 (392)
Q Consensus        84 mka~v~~~~~~~~~l~~~~~~~~p~-~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~~~p~v~G~e~~G~V~~vG~~v~  162 (392)
                      |||++++++|.   ++++ |+|.|+ ++||||||||.++|||++|++.+.|..+   ..+|.++|||++|+|+++|++|+
T Consensus         1 MkAvv~~~~g~---l~v~-e~p~P~~~~~~eVlVkv~a~gi~~sD~~~~~g~~~---~~~P~i~G~E~~G~V~~vG~~V~   73 (346)
T 4a2c_A            1 MKSVVNDTDGI---VRVA-ESVIPEIKHQDEVRVKIASSGLCGSDLPRIFKNGA---HYYPITLGHEFSGYIDAVGSGVD   73 (346)
T ss_dssp             CEEEEECSSSC---EEEE-ECCCCCCCSTTEEEEEEEEEECCTTHHHHHHSSCS---SSSSBCCCCEEEEEEEEECTTCC
T ss_pred             CCEEEEecCCC---EEEE-EEeCCCCCCcCEEEEEEEEEEECHHHHHHHcCCCC---CCCCccccEEEEEEEEEECCCcc
Confidence            89999999886   8888 899998 5799999999999999999999988753   45799999999999999999999


Q ss_pred             CCCCCCEEEeccccc------------------ccCCCCCCCcceeEEEecCCceeeCCCCCCHHhHhccchhHHHHHHH
Q 016265          163 EFKEGDEVYGDINEK------------------ALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEG  224 (392)
Q Consensus       163 ~~~vGdrV~~~~~~~------------------~~~~~~~~G~~a~~~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~a  224 (392)
                      ++++||||.+.....                  ...|...+|+|+||++++++.++++|+++++++||++. .+.+++++
T Consensus        74 ~~~~GdrV~~~~~~~~g~c~~c~~g~~~~c~~~~~~g~~~~G~~aey~~v~~~~~~~iP~~l~~~~aa~l~-~~~~~~~~  152 (346)
T 4a2c_A           74 DLHPGDAVACVPLLPCFTCPECLKGFYSQCAKYDFIGSRRDGGFAEYIVVKRKNVFALPTDMPIEDGAFIE-PITVGLHA  152 (346)
T ss_dssp             SCCTTCEEEECCEECCSCSHHHHTTCGGGCSSCEEBTTTBCCSSBSEEEEEGGGEEECCTTSCGGGGGGHH-HHHHHHHH
T ss_pred             cccCCCeEEeeeccCCCCcccccCCccccCCCcccccCCCCcccccccccchheEEECCCCCCHHHHHhch-HHHHHHHH
Confidence            999999998754211                  12345568999999999999999999999999998764 34567777


Q ss_pred             HHhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEE-EEeCCcccHHHHHhcCCcEEEeCCCCccccC------CCCc
Q 016265          225 LERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRV-AATSSTRNLEFLKSLGADLAIDYTKDNFEDL------PEKF  297 (392)
Q Consensus       225 l~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv-~~~~~~~~~~~~~~~G~~~vi~~~~~~~~~~------~~~~  297 (392)
                      +...++++|++|+|+| +|++|++++|+||++ |++++ +++.+++|+++++++|+++++|+.+.++.+.      .+++
T Consensus       153 ~~~~~~~~g~~VlV~G-aG~vG~~aiq~ak~~-G~~~vi~~~~~~~k~~~a~~lGa~~~i~~~~~~~~~~~~~~~~~~g~  230 (346)
T 4a2c_A          153 FHLAQGCENKNVIIIG-AGTIGLLAIQCAVAL-GAKSVTAIDISSEKLALAKSFGAMQTFNSSEMSAPQMQSVLRELRFN  230 (346)
T ss_dssp             HHHTTCCTTSEEEEEC-CSHHHHHHHHHHHHT-TCSEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHGGGCSS
T ss_pred             HHHhccCCCCEEEEEC-CCCcchHHHHHHHHc-CCcEEEEEechHHHHHHHHHcCCeEEEeCCCCCHHHHHHhhcccCCc
Confidence            8899999999999998 699999999999995 88764 5667999999999999999999988775432      4589


Q ss_pred             cEEEecCcc---HHHHHHhcccCCeEEEEcCCCCCCc-------------eEEEE-------eecHHHHHHHHHHHHCCC
Q 016265          298 DVVYDAIGQ---CDRAVKAIKEGGTVVALTGAVTPPG-------------FRFVV-------TSNGEVLKKLNPYLESGK  354 (392)
Q Consensus       298 D~vid~~G~---~~~~~~~l~~~G~iv~~g~~~~~~~-------------~~~~~-------~~~~~~~~~~~~~l~~g~  354 (392)
                      |++||++|.   ++.++++++++|+++.+|....+..             +.+.-       ....+.++++++++++|+
T Consensus       231 d~v~d~~G~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~k~~~i~G~~~~~~~~~~~~~~~~~~~l~~~g~  310 (346)
T 4a2c_A          231 QLILETAGVPQTVELAVEIAGPHAQLALVGTLHQDLHLTSATFGKILRKELTVIGSWMNYSSPWPGQEWETASRLLTERK  310 (346)
T ss_dssp             EEEEECSCSHHHHHHHHHHCCTTCEEEECCCCSSCEEECHHHHHHHHHHTCEEEECCTTCCSSTTCHHHHHHHHHHHTTC
T ss_pred             ccccccccccchhhhhhheecCCeEEEEEeccCCCccccccCHHHHhhceeEEEEEeccccCcchHHHHHHHHHHHHcCC
Confidence            999999983   6889999999999999987653211             11111       012467899999999999


Q ss_pred             cccccCCCcccchhhHHHHHHHHHhCCCCeeEEEEe
Q 016265          355 VKPIIDPKGPFPFSQVVEAFSYIETNKATGKVVIHP  390 (392)
Q Consensus       355 l~~~~~~t~~~~l~~~~~A~~~l~~~~~~gKvvl~~  390 (392)
                      +++...++++|+|+|+++||+.+++++..||+||+|
T Consensus       311 l~~~~lI~~~~~l~~~~~A~~~l~~~~~~GKvVl~P  346 (346)
T 4a2c_A          311 LSLEPLIAHRGSFESFAQAVRDIARNAMPGKVLLIP  346 (346)
T ss_dssp             SCCGGGEEEEECHHHHHHHHHHHTTSCCCSEEEECC
T ss_pred             CCCCccEeEEEeHHHHHHHHHHHHcCCCceEEEEEC
Confidence            987666789999999999999999999999999976

>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti}

Probab=100.00  E-value=3.3e-50  Score=388.97  Aligned_cols=300  Identities=22%  Similarity=0.276  Sum_probs=249.2

Q ss_pred             CCCCcceeEEEEc--cc-CCcceEEEeccc---------cCCCCCCCeEEEEEeEEecChHhHHhhcCCCCCCCCCCCCc
Q 016265           78 GTVPSEMKAWLYG--EY-GGVDVLKFDEKV---------TVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTV  145 (392)
Q Consensus        78 ~~~p~~mka~v~~--~~-~~~~~l~~~~~~---------~~p~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~~~p~v  145 (392)
                      +.||.+|||++++  ++ +.++.++++ +.         +.|+|++|||+|||.++|||++|++.+.|.++. ...+|.+
T Consensus         5 m~~p~~mka~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~-~~~~p~v   82 (349)
T 3pi7_A            5 MTIPSEMKALLLVGDGYTKTPSGSALE-AMEPYLEQGRIAVPAPGPSQVLIKVNLASINPSDVAFIKGQYGQ-PRVKGRP   82 (349)
T ss_dssp             CCCCSEEEEEEECSCBSCSSCCCSCCC-CSTTTEEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHTTCSSS-CBCTTSB
T ss_pred             CCCchhheEEEEEccccCCCcccceEE-EeecccccccCCCCCCCCCeEEEEEEEecCCHHHHHHhcccCCC-CCCCCCC
Confidence            4588999999999  55 234557777 77         999999999999999999999999999998652 3468999


Q ss_pred             CCCceeEEEEEeCCCC-CCCCCCCEEEecccccccCCCCCCCcceeEEEecCCceeeCCCCCCHHhHhccchhHHHHHHH
Q 016265          146 PGYDVAGVVVKVGTQV-KEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEG  224 (392)
Q Consensus       146 ~G~e~~G~V~~vG~~v-~~~~vGdrV~~~~~~~~~~~~~~~G~~a~~~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~a  224 (392)
                      +|||++|+|+++|++| ++|++||||++...      ...+|+|+||++++++.++++|+++++++||++++.++|||++
T Consensus        83 ~G~E~~G~V~~vG~~v~~~~~vGdrV~~~~g------~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~  156 (349)
T 3pi7_A           83 AGFEGVGTIVAGGDEPYAKSLVGKRVAFATG------LSNWGSWAEYAVAEAAACIPLLDTVRDEDGAAMIVNPLTAIAM  156 (349)
T ss_dssp             CCSEEEEEEEEECSSHHHHHHTTCEEEEECT------TSSCCSSBSEEEEEGGGEEECCTTCCC--GGGSSHHHHHHHHH
T ss_pred             ccceEEEEEEEECCCccCCCCCCCEEEEecc------CCCCccceeeEeechHHeEECCCCCCHHHHhhccccHHHHHHH
Confidence            9999999999999999 99999999998642      3347999999999999999999999999999999999999988


Q ss_pred             HHhcCCCCC-CeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCCccccC------CCCc
Q 016265          225 LERTGFSAG-KSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFEDL------PEKF  297 (392)
Q Consensus       225 l~~~~~~~g-~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~~~------~~~~  297 (392)
                      +++++ ++| ++|+|+||+|++|++++|+|+.. |++|++++++++|+++++++|+++++|++++++.+.      .+++
T Consensus       157 ~~~~~-~~g~~~vli~gg~g~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~v~~~~~~~g~  234 (349)
T 3pi7_A          157 FDIVK-QEGEKAFVMTAGASQLCKLIIGLAKEE-GFRPIVTVRRDEQIALLKDIGAAHVLNEKAPDFEATLREVMKAEQP  234 (349)
T ss_dssp             HHHHH-HHCCSEEEESSTTSHHHHHHHHHHHHH-TCEEEEEESCGGGHHHHHHHTCSEEEETTSTTHHHHHHHHHHHHCC
T ss_pred             HHHHh-hCCCCEEEEeCCCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHcCCCEEEECCcHHHHHHHHHHhcCCCC
Confidence            87777 777 79999999999999999999995 999999999999999999999999999987765442      2489


Q ss_pred             cEEEecCc--cHHHHHHhcccCCeEEEEcCCCC-CC-----------ceEEEEee-----------cHHHHHHHHHHHHC
Q 016265          298 DVVYDAIG--QCDRAVKAIKEGGTVVALTGAVT-PP-----------GFRFVVTS-----------NGEVLKKLNPYLES  352 (392)
Q Consensus       298 D~vid~~G--~~~~~~~~l~~~G~iv~~g~~~~-~~-----------~~~~~~~~-----------~~~~~~~~~~~l~~  352 (392)
                      |++|||+|  .++.++++++++|+++.+|.... ..           .+.+....           ..+.++++++++++
T Consensus       235 D~vid~~g~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~l~~~  314 (349)
T 3pi7_A          235 RIFLDAVTGPLASAIFNAMPKRARWIIYGRLDPDATVIREPGQLIFQHKHIEGFWLSEWMRQFKERRGPAILEAQKRFSD  314 (349)
T ss_dssp             CEEEESSCHHHHHHHHHHSCTTCEEEECCCSCCSCCCCSCTHHHHHSCCEEEECCHHHHHHHTHHHHHHHHHHC-CTTTT
T ss_pred             cEEEECCCChhHHHHHhhhcCCCEEEEEeccCCCCCCCCchhhhhccccEEEEEEehhhhhhCcHHHHHHHHHHHHHHHc
Confidence            99999999  45889999999999999985431 11           11121111           13567788889999


Q ss_pred             CCcccccCCCcccchhhHHHHHHHHHhCCCCeeEEEEe
Q 016265          353 GKVKPIIDPKGPFPFSQVVEAFSYIETNKATGKVVIHP  390 (392)
Q Consensus       353 g~l~~~~~~t~~~~l~~~~~A~~~l~~~~~~gKvvl~~  390 (392)
                      |++++.  ++++|+|+|+++||+.+ +++..||+||+|
T Consensus       315 g~l~~~--i~~~~~l~~~~~A~~~~-~~~~~gKvvl~p  349 (349)
T 3pi7_A          315 GRWSTD--VTAVVPLAEAIAWVPAE-LTKPNGKVFIRP  349 (349)
T ss_dssp             SSCCC---CCEEEEHHHHHHHHHHH-HTSSSSCEEEEC
T ss_pred             CCcccc--cceEEcHHHHHHHHHHH-hCCCCceEEEeC
Confidence            999765  67899999999999954 455669999986

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=4.1e-49  Score=381.68  Aligned_cols=305  Identities=23%  Similarity=0.300  Sum_probs=248.3

Q ss_pred             CCcceeEEEEcccCCcceEEEeccccCCCCCCCeEEEEEeEEecChHhHHhhc-CCCCCCCCCCCCcCCCceeEEEEEeC
Q 016265           80 VPSEMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQ-GKFKATDSPLPTVPGYDVAGVVVKVG  158 (392)
Q Consensus        80 ~p~~mka~v~~~~~~~~~l~~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~-g~~~~~~~~~p~v~G~e~~G~V~~vG  158 (392)
                      |+++|||+++++++.   ++++ +.+.|+|++|||+|||.++|||++|++.+. |.++.....+|.++|||++|+|+++|
T Consensus         1 m~~~mka~~~~~~~~---l~~~-~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~~g~~~~~~~~~p~v~G~E~~G~V~~vG   76 (352)
T 1e3j_A            1 MASDNLSAVLYKQND---LRLE-QRPIPEPKEDEVLLQMAYVGICGSDVHYYEHGRIADFIVKDPMVIGHEASGTVVKVG   76 (352)
T ss_dssp             ---CCEEEEEEETTE---EEEE-ECCCCCCCTTEEEEEEEEEEECHHHHHHHHHSBSSSCBCCSCEECCCEEEEEEEEEC
T ss_pred             CcccCEEEEEEcCCc---EEEE-EecCCCCCCCeEEEEEEEEEEChhhHHHHcCCCCccccCCCCccccccceEEEEEeC
Confidence            456799999988653   7888 899999999999999999999999999887 43322223578999999999999999


Q ss_pred             CCCCCCCCCCEEEecccccc------------------cCCC-CCCCcceeEEEecCCceeeCCCCCCHHhHhccchhHH
Q 016265          159 TQVKEFKEGDEVYGDINEKA------------------LEGP-KQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIE  219 (392)
Q Consensus       159 ~~v~~~~vGdrV~~~~~~~~------------------~~~~-~~~G~~a~~~~v~~~~~~~iP~~l~~~~aa~l~~~~~  219 (392)
                      ++|++|++||||++.....+                  ..|. ..+|+|+||+++++++++++|+++++++|+.+ .++.
T Consensus        77 ~~v~~~~vGdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~g~~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~~-~~~~  155 (352)
T 1e3j_A           77 KNVKHLKKGDRVAVEPGVPCRRCQFCKEGKYNLCPDLTFCATPPDDGNLARYYVHAADFCHKLPDNVSLEEGALL-EPLS  155 (352)
T ss_dssp             TTCCSCCTTCEEEECCEECCSSSHHHHTTCGGGCTTCEETTBTTBCCSCBSEEEEEGGGEEECCTTSCHHHHHTH-HHHH
T ss_pred             CCCCCCCCCCEEEEcCcCCCCCChhhhCcCcccCCCCcccCcCCCCccceeEEEeChHHeEECcCCCCHHHHHhh-chHH
Confidence            99999999999987532110                  0111 24699999999999999999999999999865 5777


Q ss_pred             HHHHHHHhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCC-Ccccc-C----
Q 016265          220 TAYEGLERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTK-DNFED-L----  293 (392)
Q Consensus       220 ta~~al~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~-~~~~~-~----  293 (392)
                      |||++++.+++++|++|||+| +|++|++++|+||. .|++|++++++++|+++++++|+++++|+++ .++.+ +    
T Consensus       156 ta~~al~~~~~~~g~~VlV~G-aG~vG~~a~qla~~-~Ga~Vi~~~~~~~~~~~~~~lGa~~~~~~~~~~~~~~~i~~~~  233 (352)
T 1e3j_A          156 VGVHACRRAGVQLGTTVLVIG-AGPIGLVSVLAAKA-YGAFVVCTARSPRRLEVAKNCGADVTLVVDPAKEEESSIIERI  233 (352)
T ss_dssp             HHHHHHHHHTCCTTCEEEEEC-CSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHTTCSEEEECCTTTSCHHHHHHHH
T ss_pred             HHHHHHHhcCCCCCCEEEEEC-CCHHHHHHHHHHHH-cCCEEEEEcCCHHHHHHHHHhCCCEEEcCcccccHHHHHHHHh
Confidence            999999989999999999999 69999999999998 5999888889999999999999999999874 44321 1    


Q ss_pred             ----CCCccEEEecCcc---HHHHHHhcccCCeEEEEcCCCCCCc----------eEEEE-eecHHHHHHHHHHHHCCCc
Q 016265          294 ----PEKFDVVYDAIGQ---CDRAVKAIKEGGTVVALTGAVTPPG----------FRFVV-TSNGEVLKKLNPYLESGKV  355 (392)
Q Consensus       294 ----~~~~D~vid~~G~---~~~~~~~l~~~G~iv~~g~~~~~~~----------~~~~~-~~~~~~~~~~~~~l~~g~l  355 (392)
                          .+++|++||++|.   ++.++++++++|+++.+|....+..          +.+.. ......++++++++++|++
T Consensus       234 ~~~~g~g~D~vid~~g~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~l~~~g~i  313 (352)
T 1e3j_A          234 RSAIGDLPNVTIDCSGNEKCITIGINITRTGGTLMLVGMGSQMVTVPLVNACAREIDIKSVFRYCNDYPIALEMVASGRC  313 (352)
T ss_dssp             HHHSSSCCSEEEECSCCHHHHHHHHHHSCTTCEEEECSCCSSCCCCCHHHHHTTTCEEEECCSCSSCHHHHHHHHHTTSC
T ss_pred             ccccCCCCCEEEECCCCHHHHHHHHHHHhcCCEEEEEecCCCCccccHHHHHhcCcEEEEeccchHHHHHHHHHHHcCCC
Confidence                3579999999983   5889999999999999986432211          11111 1113468899999999998


Q ss_pred             ccccCCCcccchhhHHHHHHHHHhCC-CCeeEEEEeC
Q 016265          356 KPIIDPKGPFPFSQVVEAFSYIETNK-ATGKVVIHPI  391 (392)
Q Consensus       356 ~~~~~~t~~~~l~~~~~A~~~l~~~~-~~gKvvl~~~  391 (392)
                      +....++++|+|+|+++||+.+++++ ..||+|+++.
T Consensus       314 ~~~~~i~~~~~l~~~~~A~~~~~~~~~~~~Kvvi~~~  350 (352)
T 1e3j_A          314 NVKQLVTHSFKLEQTVDAFEAARKKADNTIKVMISCR  350 (352)
T ss_dssp             CCGGGEEEEEEGGGHHHHHHHHHHCCTTCSEEEEECC
T ss_pred             ChHHheeEEecHHHHHHHHHHHhcCCCCceEEEEecC
Confidence            76555678999999999999999988 6799999874

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=100.00  E-value=4.1e-50  Score=391.17  Aligned_cols=304  Identities=24%  Similarity=0.340  Sum_probs=253.5

Q ss_pred             CCCCcceeEEEEcccCCcceEEEeccccCCCCCCCeEEEEEeEEecChHhHHhhcCCCCCCCCCCCCcCCCceeEEEEEe
Q 016265           78 GTVPSEMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKV  157 (392)
Q Consensus        78 ~~~p~~mka~v~~~~~~~~~l~~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~~~p~v~G~e~~G~V~~v  157 (392)
                      ..+|.+|||+++++++.   ++++ +++.|+|++|||+|||.++|||++|++.+.|.++   ..+|.++|||++|+|+++
T Consensus        18 ~~~p~~mkA~v~~~~~~---l~~~-~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~---~~~p~v~G~e~~G~V~~v   90 (370)
T 4ej6_A           18 LYFQSMMKAVRLESVGN---ISVR-NVGIPEPGPDDLLVKVEACGICGTDRHLLHGEFP---STPPVTLGHEFCGIVVEA   90 (370)
T ss_dssp             ---CCEEEEEEEEETTE---EEEE-EEECCCCCTTEEEEEEEEEECCHHHHHHHTTSSC---CCSSEECCCSEEEEEEEE
T ss_pred             cccchheEEEEEecCCc---eEEE-EccCCCCCCCeEEEEEEEEeecHHHHHHHcCCCC---CCCCeecCcceEEEEEEE
Confidence            35788999999998764   8888 8999999999999999999999999999999863   457899999999999999


Q ss_pred             CCCCCCCCCCCEEEeccccc------------------ccCCCCCCCcceeEEEecCCceeeCCCCCCHHhHhccchhHH
Q 016265          158 GTQVKEFKEGDEVYGDINEK------------------ALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIE  219 (392)
Q Consensus       158 G~~v~~~~vGdrV~~~~~~~------------------~~~~~~~~G~~a~~~~v~~~~~~~iP~~l~~~~aa~l~~~~~  219 (392)
                      |++|++|++||||++.....                  ...|...+|+|+||++++++.++++|+++++++|| ++.++.
T Consensus        91 G~~v~~~~vGdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~g~~~~G~~aey~~v~~~~~~~~P~~~~~~~aa-l~~~~~  169 (370)
T 4ej6_A           91 GSAVRDIAPGARITGDPNISCGRCPQCQAGRVNLCRNLRAIGIHRDGGFAEYVLVPRKQAFEIPLTLDPVHGA-FCEPLA  169 (370)
T ss_dssp             CTTCCSSCTTCEEEECCEECCSSSHHHHTTCGGGCTTCEEBTTTBCCSSBSEEEEEGGGEEEECTTSCTTGGG-GHHHHH
T ss_pred             CCCCCCCCCCCEEEECCCCCCCCChHHhCcCcccCCCccccCCCCCCcceEEEEEchhhEEECCCCCCHHHHh-hhhHHH
Confidence            99999999999998743211                  11344467999999999999999999999999997 777889


Q ss_pred             HHHHHHHhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCC-eEEEEeCCcccHHHHHhcCCcEEEeCCCCcccc------
Q 016265          220 TAYEGLERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGA-SRVAATSSTRNLEFLKSLGADLAIDYTKDNFED------  292 (392)
Q Consensus       220 ta~~al~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~-~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~~------  292 (392)
                      |||++++.+++++|++|||+| +|++|++++|+||. .|+ +|++++.+++|+++++++|+++++|+.+.++.+      
T Consensus       170 ta~~~l~~~~~~~g~~VlV~G-aG~vG~~aiqlak~-~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~i~~~~  247 (370)
T 4ej6_A          170 CCLHGVDLSGIKAGSTVAILG-GGVIGLLTVQLARL-AGATTVILSTRQATKRRLAEEVGATATVDPSAGDVVEAIAGPV  247 (370)
T ss_dssp             HHHHHHHHHTCCTTCEEEEEC-CSHHHHHHHHHHHH-TTCSEEEEECSCHHHHHHHHHHTCSEEECTTSSCHHHHHHSTT
T ss_pred             HHHHHHHhcCCCCCCEEEEEC-CCHHHHHHHHHHHH-cCCCEEEEECCCHHHHHHHHHcCCCEEECCCCcCHHHHHHhhh
Confidence            999999999999999999998 59999999999998 599 777888899999999999999999998776532      


Q ss_pred             -C-CCCccEEEecCcc---HHHHHHhcccCCeEEEEcCCCC--CCc----------eEEEE-eecHHHHHHHHHHHHCCC
Q 016265          293 -L-PEKFDVVYDAIGQ---CDRAVKAIKEGGTVVALTGAVT--PPG----------FRFVV-TSNGEVLKKLNPYLESGK  354 (392)
Q Consensus       293 -~-~~~~D~vid~~G~---~~~~~~~l~~~G~iv~~g~~~~--~~~----------~~~~~-~~~~~~~~~~~~~l~~g~  354 (392)
                       . .+++|+||||+|.   ++.++++++++|+++.+|....  ...          +.+.. ......++++++++++|+
T Consensus       248 ~~~~gg~Dvvid~~G~~~~~~~~~~~l~~~G~vv~~G~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~l~~~g~  327 (370)
T 4ej6_A          248 GLVPGGVDVVIECAGVAETVKQSTRLAKAGGTVVILGVLPQGEKVEIEPFDILFRELRVLGSFINPFVHRRAADLVATGA  327 (370)
T ss_dssp             SSSTTCEEEEEECSCCHHHHHHHHHHEEEEEEEEECSCCCTTCCCCCCHHHHHHTTCEEEECCSCTTCHHHHHHHHHTTC
T ss_pred             hccCCCCCEEEECCCCHHHHHHHHHHhccCCEEEEEeccCCCCccccCHHHHHhCCcEEEEeccChHHHHHHHHHHHcCC
Confidence             1 2489999999983   6899999999999999986542  111          11111 112355899999999999


Q ss_pred             cccccCCCcccchhhHHHHHHHHHhCCCC-eeEEEEeC
Q 016265          355 VKPIIDPKGPFPFSQVVEAFSYIETNKAT-GKVVIHPI  391 (392)
Q Consensus       355 l~~~~~~t~~~~l~~~~~A~~~l~~~~~~-gKvvl~~~  391 (392)
                      +++...++++|+|+|+++||+.+.+++.. +|+++++.
T Consensus       328 i~~~~~i~~~~~l~~~~~A~~~~~~~~~~~~kvv~~~~  365 (370)
T 4ej6_A          328 IEIDRMISRRISLDEAPDVISNPAAAGEVKVLVIPSAE  365 (370)
T ss_dssp             SCCGGGEEEEECGGGHHHHHHSCCCTTCSEEEECCC--
T ss_pred             CChhHcEEEEEEHHHHHHHHHHHHcCCCCeEEEEEccc
Confidence            98776678999999999999999887744 78887763

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.7e-49  Score=379.51  Aligned_cols=305  Identities=24%  Similarity=0.346  Sum_probs=256.7

Q ss_pred             CCCcceeEEEEcccCCcceEEEeccccCCCCCCCeEEEEEeEEecChHhHHhhcCCCCCCCCCCCCcCCCceeEEEEEeC
Q 016265           79 TVPSEMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVG  158 (392)
Q Consensus        79 ~~p~~mka~v~~~~~~~~~l~~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~~~p~v~G~e~~G~V~~vG  158 (392)
                      .||.+|||+++++++..  ++++ +++.|+|++|||+|||.++|||++|++.+.|.++. ...+|.++|||++|+|+++|
T Consensus         1 ~~p~~mka~~~~~~g~~--l~~~-~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~-~~~~p~v~G~E~~G~V~~vG   76 (347)
T 2hcy_A            1 SIPETQKGVIFYESHGK--LEYK-DIPVPKPKANELLINVKYSGVCHTDLHAWHGDWPL-PVKLPLVGGHEGAGVVVGMG   76 (347)
T ss_dssp             CCCSEEEEEEESSTTCC--CEEE-EEECCCCCTTEEEEEEEEEEECHHHHHHHHTCSSS-CCCSSEECCCEEEEEEEEEC
T ss_pred             CCCcccEEEEEeCCCCC--CEEE-EeeCCCCCCCEEEEEEEEEEechhHHHHhcCCCCC-CCCCCcccCccceEEEEEEC
Confidence            36788999999988843  7777 89999999999999999999999999999987642 24578999999999999999


Q ss_pred             CCCCCCCCCCEEEecc-----ccc--c------------cCCCCCCCcceeEEEecCCceeeCCCCCCHHhHhccchhHH
Q 016265          159 TQVKEFKEGDEVYGDI-----NEK--A------------LEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIE  219 (392)
Q Consensus       159 ~~v~~~~vGdrV~~~~-----~~~--~------------~~~~~~~G~~a~~~~v~~~~~~~iP~~l~~~~aa~l~~~~~  219 (392)
                      ++|++|++||||++..     ..+  +            ..|...+|+|+||++++++.++++|+++++++|+.+++++.
T Consensus        77 ~~v~~~~~GdrV~~~~~~~~cg~C~~C~~g~~~~C~~~~~~g~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~  156 (347)
T 2hcy_A           77 ENVKGWKIGDYAGIKWLNGSCMACEYCELGNESNCPHADLSGYTHDGSFQQYATADAVQAAHIPQGTDLAQVAPILCAGI  156 (347)
T ss_dssp             TTCCSCCTTCEEEECSEEECCSSSTTTTTTCGGGCTTCEEBTTTBCCSSBSEEEEETTTSEEECTTCCHHHHGGGGTHHH
T ss_pred             CCCCCCcCCCEEEEecCCCCCCCChhhhCCCcccCccccccccCCCCcceeEEEeccccEEECCCCCCHHHHHHHhhhHH
Confidence            9999999999998632     110  0            11234579999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCC-CCccccC-----
Q 016265          220 TAYEGLERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYT-KDNFEDL-----  293 (392)
Q Consensus       220 ta~~al~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~-~~~~~~~-----  293 (392)
                      |||+++++.++++|++|||+|++|++|++++|+++. .|++|+++++++++++.++++|+++++|+. .+++.+.     
T Consensus       157 ta~~~l~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~-~Ga~V~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~  235 (347)
T 2hcy_A          157 TVYKALKSANLMAGHWVAISGAAGGLGSLAVQYAKA-MGYRVLGIDGGEGKEELFRSIGGEVFIDFTKEKDIVGAVLKAT  235 (347)
T ss_dssp             HHHHHHHTTTCCTTCEEEEETTTSHHHHHHHHHHHH-TTCEEEEEECSTTHHHHHHHTTCCEEEETTTCSCHHHHHHHHH
T ss_pred             HHHHHHHhcCCCCCCEEEEECCCchHHHHHHHHHHH-CCCcEEEEcCCHHHHHHHHHcCCceEEecCccHhHHHHHHHHh
Confidence            999999988999999999999889999999999998 499999999999999999999999999976 3443221     


Q ss_pred             CCCccEEEecCcc---HHHHHHhcccCCeEEEEcCCCCC-Cc----------eEEE--EeecHHHHHHHHHHHHCCCccc
Q 016265          294 PEKFDVVYDAIGQ---CDRAVKAIKEGGTVVALTGAVTP-PG----------FRFV--VTSNGEVLKKLNPYLESGKVKP  357 (392)
Q Consensus       294 ~~~~D~vid~~G~---~~~~~~~l~~~G~iv~~g~~~~~-~~----------~~~~--~~~~~~~~~~~~~~l~~g~l~~  357 (392)
                      .+++|++||++|.   ++.++++++++|+++.+|..... ..          +.+.  .......++++++++++|++++
T Consensus       236 ~~~~D~vi~~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~l~~~g~l~~  315 (347)
T 2hcy_A          236 DGGAHGVINVSVSEAAIEASTRYVRANGTTVLVGMPAGAKCCSDVFNQVVKSISIVGSYVGNRADTREALDFFARGLVKS  315 (347)
T ss_dssp             TSCEEEEEECSSCHHHHHHHTTSEEEEEEEEECCCCTTCEEEEEHHHHHHTTCEEEECCCCCHHHHHHHHHHHHTTSCCC
T ss_pred             CCCCCEEEECCCcHHHHHHHHHHHhcCCEEEEEeCCCCCCCCCCHHHHhhCCcEEEEccCCCHHHHHHHHHHHHhCCCcc
Confidence            2279999999984   57889999999999999875421 11          1111  1124678999999999999987


Q ss_pred             ccCCCcccchhhHHHHHHHHHhCCCCeeEEEEeC
Q 016265          358 IIDPKGPFPFSQVVEAFSYIETNKATGKVVIHPI  391 (392)
Q Consensus       358 ~~~~t~~~~l~~~~~A~~~l~~~~~~gKvvl~~~  391 (392)
                      .   +++|+|+|+++||+.+++++..||+|++++
T Consensus       316 ~---~~~~~l~~~~~A~~~~~~~~~~gKvvv~~~  346 (347)
T 2hcy_A          316 P---IKVVGLSTLPEIYEKMEKGQIVGRYVVDTS  346 (347)
T ss_dssp             C---EEEEEGGGHHHHHHHHHTTCCSSEEEEESC
T ss_pred             c---eEEEcHHHHHHHHHHHHcCCcceeEEEecC
Confidence            4   478999999999999999888899999874

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=100.00  E-value=8.2e-49  Score=377.70  Aligned_cols=299  Identities=26%  Similarity=0.368  Sum_probs=253.6

Q ss_pred             eeEEEEcccCCcceEEEeccccCCCCCCCeEEEEEeEEecChHhHHhhcCCCCCCCCCCCCcCCCceeEEEEEeCCCCCC
Q 016265           84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKE  163 (392)
Q Consensus        84 mka~v~~~~~~~~~l~~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~~~p~v~G~e~~G~V~~vG~~v~~  163 (392)
                      |||+++++++..  ++++ +.+.|+|++|||+|||.++|||++|++.+.|.++. ...+|.++|||++|+|+++|++|++
T Consensus         1 Mka~~~~~~g~~--l~~~-~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~-~~~~p~v~GhE~~G~V~~vG~~v~~   76 (339)
T 1rjw_A            1 MKAAVVEQFKEP--LKIK-EVEKPTISYGEVLVRIKACGVCHTDLHAAHGDWPV-KPKLPLIPGHEGVGIVEEVGPGVTH   76 (339)
T ss_dssp             CEEEEBSSTTSC--CEEE-ECCCCCCCTTEEEEEEEEEEECHHHHHHHHTCSSS-CCCSSBCCCSCEEEEEEEECTTCCS
T ss_pred             CeEEEEcCCCCC--cEEE-EeeCCCCCCCEEEEEEEEEeEchhhHHHhcCCCCc-CCCCCeeccccceEEEEEECCCCCc
Confidence            799999988843  7777 89999999999999999999999999999987642 2457899999999999999999999


Q ss_pred             CCCCCEEEeccc-----cc--------------ccCCCCCCCcceeEEEecCCceeeCCCCCCHHhHhccchhHHHHHHH
Q 016265          164 FKEGDEVYGDIN-----EK--------------ALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEG  224 (392)
Q Consensus       164 ~~vGdrV~~~~~-----~~--------------~~~~~~~~G~~a~~~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~a  224 (392)
                      |++||||++...     .+              ...|...+|+|+||++++++.++++|+++++++||.+++++.|||++
T Consensus        77 ~~vGdrV~~~~~~~~cg~C~~C~~g~~~~C~~~~~~g~~~~G~~aey~~v~~~~~~~~P~~~~~~~aa~l~~~~~ta~~~  156 (339)
T 1rjw_A           77 LKVGDRVGIPWLYSACGHCDYCLSGQETLCEHQKNAGYSVDGGYAEYCRAAADYVVKIPDNLSFEEAAPIFCAGVTTYKA  156 (339)
T ss_dssp             CCTTCEEEECSEEECCSCSHHHHTTCGGGCTTCEEBTTTBCCSSBSEEEEEGGGCEECCTTSCHHHHGGGGTHHHHHHHH
T ss_pred             CCCCCEEEEecCCCCCCCCchhhCcCcccCCCcceeecCCCCcceeeEEechHHEEECCCCCCHHHhhhhhhhHHHHHHH
Confidence            999999986321     00              01233457999999999999999999999999999999999999999


Q ss_pred             HHhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCCcccc----CCCCccEE
Q 016265          225 LERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFED----LPEKFDVV  300 (392)
Q Consensus       225 l~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~~----~~~~~D~v  300 (392)
                      +++.++++|++|||+|+ |++|++++|+|+. .|++|++++++++|+++++++|+++++|+.+.++.+    ..+++|++
T Consensus       157 l~~~~~~~g~~VlV~Ga-G~vG~~~~~~a~~-~Ga~Vi~~~~~~~~~~~~~~lGa~~~~d~~~~~~~~~~~~~~~~~d~v  234 (339)
T 1rjw_A          157 LKVTGAKPGEWVAIYGI-GGLGHVAVQYAKA-MGLNVVAVDIGDEKLELAKELGADLVVNPLKEDAAKFMKEKVGGVHAA  234 (339)
T ss_dssp             HHHHTCCTTCEEEEECC-STTHHHHHHHHHH-TTCEEEEECSCHHHHHHHHHTTCSEEECTTTSCHHHHHHHHHSSEEEE
T ss_pred             HHhcCCCCCCEEEEECC-CHHHHHHHHHHHH-cCCEEEEEeCCHHHHHHHHHCCCCEEecCCCccHHHHHHHHhCCCCEE
Confidence            98889999999999996 8899999999998 599999999999999999999999999987655432    12589999


Q ss_pred             EecCcc---HHHHHHhcccCCeEEEEcCCCCCCc----------eEEE--EeecHHHHHHHHHHHHCCCcccccCCCccc
Q 016265          301 YDAIGQ---CDRAVKAIKEGGTVVALTGAVTPPG----------FRFV--VTSNGEVLKKLNPYLESGKVKPIIDPKGPF  365 (392)
Q Consensus       301 id~~G~---~~~~~~~l~~~G~iv~~g~~~~~~~----------~~~~--~~~~~~~~~~~~~~l~~g~l~~~~~~t~~~  365 (392)
                      ||++|.   ++.++++++++|+++.+|.......          +.+.  .....+.++++++++++|++++.   +++|
T Consensus       235 id~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~l~~~g~l~~~---~~~~  311 (339)
T 1rjw_A          235 VVTAVSKPAFQSAYNSIRRGGACVLVGLPPEEMPIPIFDTVLNGIKIIGSIVGTRKDLQEALQFAAEGKVKTI---IEVQ  311 (339)
T ss_dssp             EESSCCHHHHHHHHHHEEEEEEEEECCCCSSEEEEEHHHHHHTTCEEEECCSCCHHHHHHHHHHHHTTSCCCC---EEEE
T ss_pred             EECCCCHHHHHHHHHHhhcCCEEEEecccCCCCccCHHHHHhCCcEEEEeccCCHHHHHHHHHHHHcCCCCcc---EEEE
Confidence            999984   5889999999999999987542211          1111  11245789999999999999874   4789


Q ss_pred             chhhHHHHHHHHHhCCCCeeEEEEeC
Q 016265          366 PFSQVVEAFSYIETNKATGKVVIHPI  391 (392)
Q Consensus       366 ~l~~~~~A~~~l~~~~~~gKvvl~~~  391 (392)
                      +|+|+++||+.+++++..||+|+++.
T Consensus       312 ~l~~~~~A~~~~~~~~~~gKvvi~~~  337 (339)
T 1rjw_A          312 PLEKINEVFDRMLKGQINGRVVLTLE  337 (339)
T ss_dssp             EGGGHHHHHHHHHTTCCSSEEEEECC
T ss_pred             cHHHHHHHHHHHHcCCCceEEEEecC
Confidence            99999999999999888899999874

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=100.00  E-value=1.1e-48  Score=381.88  Aligned_cols=304  Identities=22%  Similarity=0.263  Sum_probs=252.1

Q ss_pred             CCCCcceeEEEEcccCCcceEEEeccccCCCCCCCeEEEEEeEEecChHhHHhhcCCCCCCCCCCCCcCCCceeEEEEEe
Q 016265           78 GTVPSEMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKV  157 (392)
Q Consensus        78 ~~~p~~mka~v~~~~~~~~~l~~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~~~p~v~G~e~~G~V~~v  157 (392)
                      ++.|.+|||+++.+++.+  ++++ +++.|+|++|||+|||.++|||++|++.+.|. +  ...+|.++|||++|+|+++
T Consensus         3 ~~~p~~mka~~~~~~g~~--l~~~-~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~-~--~~~~P~v~GhE~~G~V~~v   76 (376)
T 1e3i_A            3 QGKVIKCKAAIAWKTGSP--LCIE-EIEVSPPKACEVRIQVIATCVCPTDINATDPK-K--KALFPVVLGHECAGIVESV   76 (376)
T ss_dssp             TTSCEEEEEEEBCSTTSC--CEEE-EEEECCCCTTEEEEEEEEEECCHHHHHTTCTT-S--CCCSSBCCCCEEEEEEEEE
T ss_pred             CCCChheeEEEEecCCCC--eEEE-EeeCCCCCCCeEEEEEeEEeEchhhHHHhcCC-C--CCCCCcccCccccEEEEEE
Confidence            456788999999988754  6777 89999999999999999999999999999886 3  2457899999999999999


Q ss_pred             CCCCCCCCCCCEEEecccccc-------------c------------CCC------------------CCCCcceeEEEe
Q 016265          158 GTQVKEFKEGDEVYGDINEKA-------------L------------EGP------------------KQFGSLAEYTAV  194 (392)
Q Consensus       158 G~~v~~~~vGdrV~~~~~~~~-------------~------------~~~------------------~~~G~~a~~~~v  194 (392)
                      |++|++|++||||++.....+             +            .|.                  ...|+|+||+++
T Consensus        77 G~~v~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~~~~~G~~~~g~~~~~~~g~~~~~~~~~G~~aey~~v  156 (376)
T 1e3i_A           77 GPGVTNFKPGDKVIPFFAPQCKRCKLCLSPLTNLCGKLRNFKYPTIDQELMEDRTSRFTCKGRSIYHFMGVSSFSQYTVV  156 (376)
T ss_dssp             CTTCCSCCTTCEEEECSSCCCSSSHHHHCTTCCCCTTCCCSSCGGGSSCSCTTSCCSEEETTEEEBCCTTTCCSBSEEEE
T ss_pred             CCCCccCCCCCEEEECCcCCCCCCccccCCCcccCcCcCccccccccccccccCccccccCCcccccccCCccceeEEEe
Confidence            999999999999987532100             0            011                  024999999999


Q ss_pred             cCCceeeCCCCCCHHhHhccchhHHHHHHHH-HhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCC-eEEEEeCCcccHH
Q 016265          195 EERLLAPKPKNLDFVQAAGLPLAIETAYEGL-ERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGA-SRVAATSSTRNLE  272 (392)
Q Consensus       195 ~~~~~~~iP~~l~~~~aa~l~~~~~ta~~al-~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~-~vv~~~~~~~~~~  272 (392)
                      +++.++++|+++++++|+++++++.|||+++ +.+++++|++|||+| +|++|++++|+||. .|+ +|++++.+++|++
T Consensus       157 ~~~~~~~iP~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~G-aG~vG~~aiqlak~-~Ga~~Vi~~~~~~~~~~  234 (376)
T 1e3i_A          157 SEANLARVDDEANLERVCLIGCGFSSGYGAAINTAKVTPGSTCAVFG-LGCVGLSAIIGCKI-AGASRIIAIDINGEKFP  234 (376)
T ss_dssp             EGGGEEECCTTCCHHHHGGGGTHHHHHHHHHHTTSCCCTTCEEEEEC-CSHHHHHHHHHHHH-TTCSEEEEECSCGGGHH
T ss_pred             ccccEEECCCCCCHHHhhhhccHHHHHHHHHHHhcCCCCCCEEEEEC-CCHHHHHHHHHHHH-cCCCeEEEEcCCHHHHH
Confidence            9999999999999999999999999999998 568999999999998 69999999999998 499 7888888999999


Q ss_pred             HHHhcCCcEEEeCCC--Ccccc----C-CCCccEEEecCcc---HHHHHHhcccC-CeEEEEcCCCCCCce---------
Q 016265          273 FLKSLGADLAIDYTK--DNFED----L-PEKFDVVYDAIGQ---CDRAVKAIKEG-GTVVALTGAVTPPGF---------  332 (392)
Q Consensus       273 ~~~~~G~~~vi~~~~--~~~~~----~-~~~~D~vid~~G~---~~~~~~~l~~~-G~iv~~g~~~~~~~~---------  332 (392)
                      +++++|+++++|+.+  +++.+    . .+++|+||||+|.   ++.++++++++ |+++.+|.......+         
T Consensus       235 ~a~~lGa~~vi~~~~~~~~~~~~v~~~~~~g~Dvvid~~G~~~~~~~~~~~l~~~~G~iv~~G~~~~~~~~~~~~~~~~~  314 (376)
T 1e3i_A          235 KAKALGATDCLNPRELDKPVQDVITELTAGGVDYSLDCAGTAQTLKAAVDCTVLGWGSCTVVGAKVDEMTIPTVDVILGR  314 (376)
T ss_dssp             HHHHTTCSEEECGGGCSSCHHHHHHHHHTSCBSEEEESSCCHHHHHHHHHTBCTTTCEEEECCCSSSEEEEEHHHHHTTC
T ss_pred             HHHHhCCcEEEccccccchHHHHHHHHhCCCccEEEECCCCHHHHHHHHHHhhcCCCEEEEECCCCCccccCHHHhhccC
Confidence            999999999999874  33322    1 2489999999984   58999999999 999999873211111         


Q ss_pred             EEEEee-----cHHHHHHHHHHHHCCCcccccCCCcccchhhHHHHHHHHHhCCCCeeEEEEe
Q 016265          333 RFVVTS-----NGEVLKKLNPYLESGKVKPIIDPKGPFPFSQVVEAFSYIETNKATGKVVIHP  390 (392)
Q Consensus       333 ~~~~~~-----~~~~~~~~~~~l~~g~l~~~~~~t~~~~l~~~~~A~~~l~~~~~~gKvvl~~  390 (392)
                      .+....     ..+.++++++++++|++++...++++|+|+|+++||+.+++++. +|+||++
T Consensus       315 ~i~g~~~~~~~~~~~~~~~~~l~~~g~i~~~~~i~~~~~l~~~~~A~~~~~~~~~-~Kvvi~~  376 (376)
T 1e3i_A          315 SINGTFFGGWKSVDSVPNLVSDYKNKKFDLDLLVTHALPFESINDAIDLMKEGKS-IRTILTF  376 (376)
T ss_dssp             EEEECSGGGCCHHHHHHHHHHHHHTTSSCGGGGEEEEEEGGGHHHHHHHHHTTCC-SEEEEEC
T ss_pred             eEEEEecCCCCcHHHHHHHHHHHHcCCCCcHHhEeeeecHHHHHHHHHHHhcCCc-ceEEEeC
Confidence            111111     24678999999999999876566789999999999999998874 7999875

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=100.00  E-value=7.5e-49  Score=382.78  Aligned_cols=303  Identities=20%  Similarity=0.230  Sum_probs=251.1

Q ss_pred             CCCCcceeEEEEcccCCcceEEEeccccCCCCCCCeEEEEEeEEecChHhHHhhcCCCCCCCCCCCCcCCCceeEEEEEe
Q 016265           78 GTVPSEMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKV  157 (392)
Q Consensus        78 ~~~p~~mka~v~~~~~~~~~l~~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~~~p~v~G~e~~G~V~~v  157 (392)
                      ..+|.+|||+++.+++.+  ++++ +++.|+|++|||||||.++|||++|++.+.|.++   ..+|.++|||++|+|+++
T Consensus         4 ~~~p~~mka~~~~~~g~~--l~~~-~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~---~~~P~v~GhE~~G~V~~v   77 (373)
T 1p0f_A            4 AGKDITCKAAVAWEPHKP--LSLE-TITVAPPKAHEVRIKILASGICGSDSSVLKEIIP---SKFPVILGHEAVGVVESI   77 (373)
T ss_dssp             TTSCEEEEEEEBSSTTSC--CEEE-EEEECCCCTTEEEEEEEEEECCHHHHHHHTTSSC---CCSSBCCCCCEEEEEEEE
T ss_pred             cCCcceeEEEEEEcCCCC--eeEE-EeeCCCCCCCeEEEEEeEEeecchhHHHhcCCCC---CCCCcccCcCceEEEEEE
Confidence            356788999999988754  6777 8999999999999999999999999999998764   457899999999999999


Q ss_pred             CCCCCCCCCCCEEEecccccc-------------cC--------CC------------------CCCCcceeEEEecCCc
Q 016265          158 GTQVKEFKEGDEVYGDINEKA-------------LE--------GP------------------KQFGSLAEYTAVEERL  198 (392)
Q Consensus       158 G~~v~~~~vGdrV~~~~~~~~-------------~~--------~~------------------~~~G~~a~~~~v~~~~  198 (392)
                      |++|++|++||||++.....+             +.        |.                  ...|+|+||++++++.
T Consensus        78 G~~v~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~G~~~~g~~~~~~~g~~~~~~~~~G~~aey~~v~~~~  157 (373)
T 1p0f_A           78 GAGVTCVKPGDKVIPLFVPQCGSCRACKSSNSNFCEKNDMGAKTGLMADMTSRFTCRGKPIYNLMGTSTFTEYTVVADIA  157 (373)
T ss_dssp             CTTCCSCCTTCEEEECSSCCCSSSHHHHCTTCCCCTTCSTTTCCCSCTTSCCSEEETTEEEBCSTTTCCSBSEEEEETTS
T ss_pred             CCCCCccCCCCEEEECCCCCCCCChhhcCCCcCcCcCCCcccccccccCCccccccCCcccccccCCccceeEEEEchhh
Confidence            999999999999987532100             00        10                  1249999999999999


Q ss_pred             eeeCCCCCCHHhHhccchhHHHHHHHH-HhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCC-eEEEEeCCcccHHHHHh
Q 016265          199 LAPKPKNLDFVQAAGLPLAIETAYEGL-ERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGA-SRVAATSSTRNLEFLKS  276 (392)
Q Consensus       199 ~~~iP~~l~~~~aa~l~~~~~ta~~al-~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~-~vv~~~~~~~~~~~~~~  276 (392)
                      ++++|++++++ ||++++++.|||+++ +.+++++|++|||+| +|++|++++|+||.+ |+ +|++++.+++|++++++
T Consensus       158 ~~~iP~~l~~~-aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~G-aG~vG~~aiqlak~~-Ga~~Vi~~~~~~~~~~~a~~  234 (373)
T 1p0f_A          158 VAKIDPKAPLE-SCLIGCGFATGYGAAVNTAKVTPGSTCAVFG-LGGVGFSAIVGCKAA-GASRIIGVGTHKDKFPKAIE  234 (373)
T ss_dssp             EEEECTTCCGG-GGGGGTHHHHHHHHHHTTTCCCTTCEEEEEC-CSHHHHHHHHHHHHH-TCSEEEEECSCGGGHHHHHH
T ss_pred             EEECCCCCChh-hhhhhhHHHHHHHHHHhccCCCCCCEEEEEC-CCHHHHHHHHHHHHc-CCCeEEEECCCHHHHHHHHH
Confidence            99999999999 999999999999998 468999999999998 799999999999995 98 78888889999999999


Q ss_pred             cCCcEEEeCCC--Ccccc----C-CCCccEEEecCcc---HHHHHHhcccC-CeEEEEcCCCCCCce-----------EE
Q 016265          277 LGADLAIDYTK--DNFED----L-PEKFDVVYDAIGQ---CDRAVKAIKEG-GTVVALTGAVTPPGF-----------RF  334 (392)
Q Consensus       277 ~G~~~vi~~~~--~~~~~----~-~~~~D~vid~~G~---~~~~~~~l~~~-G~iv~~g~~~~~~~~-----------~~  334 (392)
                      +|+++++|+.+  +++.+    . .+++|+||||+|.   ++.++++++++ |+++.+|.......+           .+
T Consensus       235 lGa~~vi~~~~~~~~~~~~i~~~t~gg~Dvvid~~g~~~~~~~~~~~l~~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~i  314 (373)
T 1p0f_A          235 LGATECLNPKDYDKPIYEVICEKTNGGVDYAVECAGRIETMMNALQSTYCGSGVTVVLGLASPNERLPLDPLLLLTGRSL  314 (373)
T ss_dssp             TTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEECSCCHHHHHHHHHTBCTTTCEEEECCCCCTTCCEEECTHHHHTTCEE
T ss_pred             cCCcEEEecccccchHHHHHHHHhCCCCCEEEECCCCHHHHHHHHHHHhcCCCEEEEEccCCCCCccccCHHHhccCceE
Confidence            99999999864  33322    1 2489999999984   58999999999 999999865421111           11


Q ss_pred             EEe----ecHHHHHHHHHHHHCCCcccccCCCcccchhhHHHHHHHHHhCCCCeeEEEEe
Q 016265          335 VVT----SNGEVLKKLNPYLESGKVKPIIDPKGPFPFSQVVEAFSYIETNKATGKVVIHP  390 (392)
Q Consensus       335 ~~~----~~~~~~~~~~~~l~~g~l~~~~~~t~~~~l~~~~~A~~~l~~~~~~gKvvl~~  390 (392)
                      ...    ...+.++++++++++|++++...++++|+|+|+++||+.+++++. +|+||+|
T Consensus       315 ~g~~~~~~~~~~~~~~~~l~~~g~i~~~~~i~~~~~l~~~~~A~~~~~~~~~-~kvvi~~  373 (373)
T 1p0f_A          315 KGSVFGGFKGEEVSRLVDDYMKKKINVNFLVSTKLTLDQINKAFELLSSGQG-VRSIMIY  373 (373)
T ss_dssp             EECSGGGCCGGGHHHHHHHHHTTSSCGGGGEEEEECGGGHHHHHHHTTTSSC-SEEEEEC
T ss_pred             EeeccCCcCHHHHHHHHHHHHcCCCCchheEEEEeeHHHHHHHHHHHHCCCc-ceEEEeC
Confidence            111    113578999999999999876566789999999999999988775 7999875

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=1.1e-48  Score=381.23  Aligned_cols=299  Identities=20%  Similarity=0.232  Sum_probs=250.9

Q ss_pred             CcceeEEEEcccCCcceEEEeccccCCCCCCCeEEEEEeEEecChHhHHhhcCCCCCCCCCCCCcCCCceeEEEEEeCCC
Q 016265           81 PSEMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQ  160 (392)
Q Consensus        81 p~~mka~v~~~~~~~~~l~~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~~~p~v~G~e~~G~V~~vG~~  160 (392)
                      +.+|||+++++++.+  ++++ +++.|+|++|||+|||.++|||++|++.+.|.++   ..+|.++|||++|+|+++|++
T Consensus         4 ~~~mka~~~~~~g~~--l~~~-~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~---~~~P~v~GhE~~G~V~~vG~~   77 (371)
T 1f8f_A            4 LKDIIAAVTPCKGAD--FELQ-ALKIRQPQGDEVLVKVVATGMCHTDLIVRDQKYP---VPLPAVLGHEGSGIIEAIGPN   77 (371)
T ss_dssp             CEEEEEEEBCSTTCC--CEEE-EEEECCCCTTEEEEEEEEEECCHHHHHHHTTSSC---CCSSBCCCCEEEEEEEEECTT
T ss_pred             cccceEEEEcCCCCC--eEEE-EecCCCCCCCEEEEEEEEeecCchhHHHHcCCCC---CCCCcccCcccceEEEEeCCC
Confidence            457999999988754  6777 8999999999999999999999999999999754   457899999999999999999


Q ss_pred             CCCCCCCCEEEecccccc---------------------c--------------CCC------CCCCcceeEEEecCCce
Q 016265          161 VKEFKEGDEVYGDINEKA---------------------L--------------EGP------KQFGSLAEYTAVEERLL  199 (392)
Q Consensus       161 v~~~~vGdrV~~~~~~~~---------------------~--------------~~~------~~~G~~a~~~~v~~~~~  199 (392)
                      |++|++||||++.. ..+                     .              .|.      ...|+|+||++++++.+
T Consensus        78 v~~~~~GdrV~~~~-~~Cg~C~~C~~g~~~~C~~~~~~~~~g~~~~g~~~~~~~~g~~~~~~~~~~G~~aey~~v~~~~~  156 (371)
T 1f8f_A           78 VTELQVGDHVVLSY-GYCGKCTQCNTGNPAYCSEFFGRNFSGADSEGNHALCTHDQGVVNDHFFAQSSFATYALSRENNT  156 (371)
T ss_dssp             CCSCCTTCEEEECC-CCCSSSHHHHTTCGGGCTTHHHHSSSSSCSSSCCSBC------CBCCGGGTCCSBSEEEEEGGGE
T ss_pred             CCCCCCCCEEEecC-CCCCCChhhhCcCccccccccccccccccccccccccccCCccccccccCCccccCeEEechhhe
Confidence            99999999999743 100                     0              010      12589999999999999


Q ss_pred             eeCCCCCCHHhHhccchhHHHHHHHH-HhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCC-eEEEEeCCcccHHHHHhc
Q 016265          200 APKPKNLDFVQAAGLPLAIETAYEGL-ERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGA-SRVAATSSTRNLEFLKSL  277 (392)
Q Consensus       200 ~~iP~~l~~~~aa~l~~~~~ta~~al-~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~-~vv~~~~~~~~~~~~~~~  277 (392)
                      +++|+++++++|+.+++++.|||+++ +.+++++|++|||+| +|++|++++|+||.+ |+ +|++++.+++|+++++++
T Consensus       157 ~~iP~~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~VlV~G-aG~vG~~a~qlak~~-Ga~~Vi~~~~~~~~~~~a~~l  234 (371)
T 1f8f_A          157 VKVTKDVPIELLGPLGCGIQTGAGACINALKVTPASSFVTWG-AGAVGLSALLAAKVC-GASIIIAVDIVESRLELAKQL  234 (371)
T ss_dssp             EEECTTSCGGGTGGGGTHHHHHHHHHHTTTCCCTTCEEEEES-CSHHHHHHHHHHHHH-TCSEEEEEESCHHHHHHHHHH
T ss_pred             EECCCCCCHHHHHHhcchHHHHHHHHHhccCCCCCCEEEEEC-CCHHHHHHHHHHHHc-CCCeEEEECCCHHHHHHHHHc
Confidence            99999999999999999999999999 578999999999998 799999999999995 99 578888899999999999


Q ss_pred             CCcEEEeCCCCcccc----C-CCCccEEEecCcc---HHHHHHhcccCCeEEEEcCCCC--CCc----------eEEEEe
Q 016265          278 GADLAIDYTKDNFED----L-PEKFDVVYDAIGQ---CDRAVKAIKEGGTVVALTGAVT--PPG----------FRFVVT  337 (392)
Q Consensus       278 G~~~vi~~~~~~~~~----~-~~~~D~vid~~G~---~~~~~~~l~~~G~iv~~g~~~~--~~~----------~~~~~~  337 (392)
                      |+++++|+.+.++.+    . .+++|+|||++|.   ++.++++++++|+++.+|....  +..          +.+...
T Consensus       235 Ga~~vi~~~~~~~~~~~~~~~~gg~D~vid~~g~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~i~g~  314 (371)
T 1f8f_A          235 GATHVINSKTQDPVAAIKEITDGGVNFALESTGSPEILKQGVDALGILGKIAVVGAPQLGTTAQFDVNDLLLGGKTILGV  314 (371)
T ss_dssp             TCSEEEETTTSCHHHHHHHHTTSCEEEEEECSCCHHHHHHHHHTEEEEEEEEECCCCSTTCCCCCCHHHHHHTTCEEEEC
T ss_pred             CCCEEecCCccCHHHHHHHhcCCCCcEEEECCCCHHHHHHHHHHHhcCCEEEEeCCCCCCCccccCHHHHHhCCCEEEEe
Confidence            999999998766432    1 2379999999984   5889999999999999986531  111          122211


Q ss_pred             e-----cHHHHHHHHHHHHCCCcccccCCCcccchhhHHHHHHHHHhCCCCeeEEEEe
Q 016265          338 S-----NGEVLKKLNPYLESGKVKPIIDPKGPFPFSQVVEAFSYIETNKATGKVVIHP  390 (392)
Q Consensus       338 ~-----~~~~~~~~~~~l~~g~l~~~~~~t~~~~l~~~~~A~~~l~~~~~~gKvvl~~  390 (392)
                      .     ..+.++++++++++|++++...+++ |+|+|+++||+.+++++. +|+||++
T Consensus       315 ~~~~~~~~~~~~~~~~l~~~g~l~~~~~i~~-~~l~~~~~A~~~~~~~~~-~Kvvv~~  370 (371)
T 1f8f_A          315 VEGSGSPKKFIPELVRLYQQGKFPFDQLVKF-YAFDEINQAAIDSRKGIT-LKPIIKI  370 (371)
T ss_dssp             SGGGSCHHHHHHHHHHHHHTTSCCGGGGEEE-EEGGGHHHHHHHHHHTSC-SEEEEEC
T ss_pred             CCCCCchHHHHHHHHHHHHcCCCCcccceeE-ecHHHHHHHHHHHHCCCc-eEEEEee
Confidence            1     1467899999999999987655677 999999999999998876 7999986

>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=7.7e-49  Score=380.77  Aligned_cols=299  Identities=22%  Similarity=0.296  Sum_probs=246.4

Q ss_pred             CcceeEEEEcccCCcceEEEeccccCCC-CCCCeEEEEEeEEecChHhHHhhcCCCCC-CCCCCCCcCCCceeEEEEEeC
Q 016265           81 PSEMKAWLYGEYGGVDVLKFDEKVTVPQ-VKEDQVLIKVVAAALNPVDGKRRQGKFKA-TDSPLPTVPGYDVAGVVVKVG  158 (392)
Q Consensus        81 p~~mka~v~~~~~~~~~l~~~~~~~~p~-~~~~eVlV~v~~~~i~~~D~~~~~g~~~~-~~~~~p~v~G~e~~G~V~~vG  158 (392)
                      |.+|||+++++++..  ++++ ++|.|+ |++|||+|||.++|||++|++.+.|.++. ....+|.++|||++|+|+++|
T Consensus        13 ~~~mka~~~~~~g~~--l~~~-~~p~P~~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~p~v~G~E~~G~V~~vG   89 (359)
T 1h2b_A           13 VERLKAARLHEYNKP--LRIE-DVDYPRLEGRFDVIVRIAGAGVCHTDLHLVQGMWHELLQPKLPYTLGHENVGYIEEVA   89 (359)
T ss_dssp             ----CEEEESSTTSC--CEEE-CCCCCCCBTTBCEEEEEEEEECCHHHHHHHHTTTHHHHCCCSSEECCCCEEEEEEEEC
T ss_pred             hhhceEEEEecCCCC--cEEE-EccCCCCCCCCEEEEEEEEEEecccchHHHhCCCccccCCCCCeecCcCceEEEEEEC
Confidence            567999999988743  7788 899999 99999999999999999999999987531 023578999999999999999


Q ss_pred             CCCCCCCCCCEEEeccccc------------------ccCCCCCCCcceeEEEecCCceeeCCCCCCHHhHh---ccchh
Q 016265          159 TQVKEFKEGDEVYGDINEK------------------ALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAA---GLPLA  217 (392)
Q Consensus       159 ~~v~~~~vGdrV~~~~~~~------------------~~~~~~~~G~~a~~~~v~~~~~~~iP~~l~~~~aa---~l~~~  217 (392)
                      ++|++|++||||++.....                  ...|...+|+|+||++++++.++++|+++++++|+   .++++
T Consensus        90 ~~v~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~G~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~~~~l~~~  169 (359)
T 1h2b_A           90 EGVEGLEKGDPVILHPAVTDGTCLACRAGEDMHCENLEFPGLNIDGGFAEFMRTSHRSVIKLPKDISREKLVEMAPLADA  169 (359)
T ss_dssp             TTCCSCCTTCEEEECSCBCCSCSHHHHTTCGGGCTTCBCBTTTBCCSSBSEEEECGGGEEECCTTCCHHHHHHTGGGGTH
T ss_pred             CCCCCCCCCCEEEeCCCCCCCCChhhhCcCcccCCCccccccCCCCcccceEEechHhEEECCCCCCHHHHhhccchhhh
Confidence            9999999999998753210                  01222357999999999999999999999999999   78889


Q ss_pred             HHHHHHHHHh--cCCCCCCeEEEEcCCCcHHHHHHHHHHHhc-CCeEEEEeCCcccHHHHHhcCCcEEEeCCCCcccc--
Q 016265          218 IETAYEGLER--TGFSAGKSILVLNGSGGVGSLVIQLAKQVF-GASRVAATSSTRNLEFLKSLGADLAIDYTKDNFED--  292 (392)
Q Consensus       218 ~~ta~~al~~--~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~-G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~~--  292 (392)
                      +.|||+++.+  +++++|++|||+|+ |++|++++|+||. . |++|++++++++|+++++++|+++++|++++ +.+  
T Consensus       170 ~~ta~~al~~~~~~~~~g~~VlV~Ga-G~vG~~avqlak~-~~Ga~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~-~~~~v  246 (359)
T 1h2b_A          170 GITAYRAVKKAARTLYPGAYVAIVGV-GGLGHIAVQLLKV-MTPATVIALDVKEEKLKLAERLGADHVVDARRD-PVKQV  246 (359)
T ss_dssp             HHHHHHHHHHHHTTCCTTCEEEEECC-SHHHHHHHHHHHH-HCCCEEEEEESSHHHHHHHHHTTCSEEEETTSC-HHHHH
T ss_pred             HHHHHHHHHhhccCCCCCCEEEEECC-CHHHHHHHHHHHH-cCCCeEEEEeCCHHHHHHHHHhCCCEEEeccch-HHHHH
Confidence            9999999987  89999999999996 9999999999998 6 9999999999999999999999999999876 322  


Q ss_pred             --C--CCCccEEEecCccH-----HHHHHhcccCCeEEEEcCCCCC-C--------ceEEEE--eecHHHHHHHHHHHHC
Q 016265          293 --L--PEKFDVVYDAIGQC-----DRAVKAIKEGGTVVALTGAVTP-P--------GFRFVV--TSNGEVLKKLNPYLES  352 (392)
Q Consensus       293 --~--~~~~D~vid~~G~~-----~~~~~~l~~~G~iv~~g~~~~~-~--------~~~~~~--~~~~~~~~~~~~~l~~  352 (392)
                        .  .+++|++||++|..     +.++++  ++|+++.+|....+ .        .+.+..  ....+.++++++++++
T Consensus       247 ~~~~~g~g~Dvvid~~G~~~~~~~~~~~~~--~~G~~v~~g~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~l~~~  324 (359)
T 1h2b_A          247 MELTRGRGVNVAMDFVGSQATVDYTPYLLG--RMGRLIIVGYGGELRFPTIRVISSEVSFEGSLVGNYVELHELVTLALQ  324 (359)
T ss_dssp             HHHTTTCCEEEEEESSCCHHHHHHGGGGEE--EEEEEEECCCSSCCCCCHHHHHHTTCEEEECCSCCHHHHHHHHHHHHT
T ss_pred             HHHhCCCCCcEEEECCCCchHHHHHHHhhc--CCCEEEEEeCCCCCCCCHHHHHhCCcEEEEecCCCHHHHHHHHHHHHc
Confidence              2  23799999999853     345555  99999999865422 1        111211  2246789999999999


Q ss_pred             CCcccccCCCcccchhhHHHHHHHHHhCCCCeeEEEEe
Q 016265          353 GKVKPIIDPKGPFPFSQVVEAFSYIETNKATGKVVIHP  390 (392)
Q Consensus       353 g~l~~~~~~t~~~~l~~~~~A~~~l~~~~~~gKvvl~~  390 (392)
                      |++++.  + ++|+|+|+++||+.+++++..||+|+++
T Consensus       325 g~l~~~--i-~~~~l~~~~~A~~~~~~~~~~gKvvv~~  359 (359)
T 1h2b_A          325 GKVRVE--V-DIHKLDEINDVLERLEKGEVLGRAVLIP  359 (359)
T ss_dssp             TSCCCC--E-EEEEGGGHHHHHHHHHTTCCSSEEEEEC
T ss_pred             CCCcce--E-EEEeHHHHHHHHHHHHcCCCceEEEeeC
Confidence            999875  3 8999999999999999998889999975

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A*

Probab=100.00  E-value=8.4e-49  Score=379.79  Aligned_cols=301  Identities=28%  Similarity=0.436  Sum_probs=251.3

Q ss_pred             CCCCCcceeEEEEcccCCcceEEEeccccCCCCCCCeEEEEEeEEecChHhHHhhcCCCCCCCCCCCCcCCCceeEEEEE
Q 016265           77 VGTVPSEMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVK  156 (392)
Q Consensus        77 ~~~~p~~mka~v~~~~~~~~~l~~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~~~p~v~G~e~~G~V~~  156 (392)
                      ...+|.+|||+++.+++.++.++++ +.+.|+|++|||+|||.++|||++|++.+.|.++. ...+|.++|||++|+|++
T Consensus        16 ~~~~~~~Mka~~~~~~g~~~~l~~~-~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~-~~~~p~v~G~E~~G~V~~   93 (354)
T 2j8z_A           16 ENLYFQSMLAVHFDKPGGPENLYVK-EVAKPSPGEGEVLLKVAASALNRADLMQRQGQYDP-PPGASNILGLEASGHVAE   93 (354)
T ss_dssp             -----CEEEEEEESSCSSGGGEEEE-EEECCCCCTTEEEEEEEEEECCHHHHHHHHTSSCC-CTTSCSSSCSEEEEEEEE
T ss_pred             cccchhheeEEEEccCCCccceEEe-ecCCCCCCCCeEEEEEEEeecCHHHHHHhCCCCCC-CCCCCcccceeeEEEEEE
Confidence            3456788999999999877778888 89999999999999999999999999999997653 235789999999999999


Q ss_pred             eCCCC-CCCCCCCEEEecccccccCCCCCCCcceeEEEecCCceeeCCCCCCHHhHhccchhHHHHHHHH-HhcCCCCCC
Q 016265          157 VGTQV-KEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGL-ERTGFSAGK  234 (392)
Q Consensus       157 vG~~v-~~~~vGdrV~~~~~~~~~~~~~~~G~~a~~~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~al-~~~~~~~g~  234 (392)
                      +|++| ++|++||||++..         ..|+|+||++++++.++++|+++++++||++++++.|||+++ +.+++++|+
T Consensus        94 vG~~v~~~~~vGdrV~~~~---------~~G~~aey~~v~~~~~~~iP~~ls~~~aa~l~~~~~tA~~al~~~~~~~~g~  164 (354)
T 2j8z_A           94 LGPGCQGHWKIGDTAMALL---------PGGGQAQYVTVPEGLLMPIPEGLTLTQAAAIPEAWLTAFQLLHLVGNVQAGD  164 (354)
T ss_dssp             ECSCC--CCCTTCEEEEEC---------SSCCSBSEEEEEGGGEEECCTTCCHHHHTTSHHHHHHHHHHHTTTSCCCTTC
T ss_pred             ECCCcCCCCCCCCEEEEec---------CCCcceeEEEeCHHHcEECCCCCCHHHHHhccchHHHHHHHHHHhcCCCCCC
Confidence            99999 9999999999864         259999999999999999999999999999999999999999 578999999


Q ss_pred             eEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCCcccc----C--CCCccEEEecCc--c
Q 016265          235 SILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFED----L--PEKFDVVYDAIG--Q  306 (392)
Q Consensus       235 ~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~~----~--~~~~D~vid~~G--~  306 (392)
                      +|||+||+|++|++++|+|+. .|++|+++++++++++.++++|++.++|+.+.++.+    .  .+++|++|||+|  .
T Consensus       165 ~vlV~Ga~ggiG~~~~~~a~~-~Ga~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~G~~~  243 (354)
T 2j8z_A          165 YVLIHAGLSGVGTAAIQLTRM-AGAIPLVTAGSQKKLQMAEKLGAAAGFNYKKEDFSEATLKFTKGAGVNLILDCIGGSY  243 (354)
T ss_dssp             EEEESSTTSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTSCEEEEEESSCGGG
T ss_pred             EEEEECCccHHHHHHHHHHHH-cCCEEEEEeCCHHHHHHHHHcCCcEEEecCChHHHHHHHHHhcCCCceEEEECCCchH
Confidence            999999999999999999998 599999999999999999999999999987765432    1  347999999998  4


Q ss_pred             HHHHHHhcccCCeEEEEcCCCCC---Cc---------eEEEEe---ec-H--------HHHHHHHHHHHCC---Cccccc
Q 016265          307 CDRAVKAIKEGGTVVALTGAVTP---PG---------FRFVVT---SN-G--------EVLKKLNPYLESG---KVKPII  359 (392)
Q Consensus       307 ~~~~~~~l~~~G~iv~~g~~~~~---~~---------~~~~~~---~~-~--------~~~~~~~~~l~~g---~l~~~~  359 (392)
                      ++.++++++++|+++.+|.....   ..         +.+...   .. .        ..++++++++++|   ++++. 
T Consensus       244 ~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~~-  322 (354)
T 2j8z_A          244 WEKNVNCLALDGRWVLYGLMGGGDINGPLFSKLLFKRGSLITSLLRSRDNKYKQMLVNAFTEQILPHFSTEGPQRLLPV-  322 (354)
T ss_dssp             HHHHHHHEEEEEEEEECCCTTCSCCCSCHHHHHHHTTCEEEECCSTTCCHHHHHHHHHHHHHHTGGGGTC---CCCCCC-
T ss_pred             HHHHHHhccCCCEEEEEeccCCCccCCChhHHHHhCCCEEEEEEcccccccccHHHHHHHHHHHHHHHHcCCCccccCc-
Confidence            68899999999999999864321   11         111111   01 1        1234578889999   77654 


Q ss_pred             CCCcccchhhHHHHHHHHHhCCCCeeEEEEeC
Q 016265          360 DPKGPFPFSQVVEAFSYIETNKATGKVVIHPI  391 (392)
Q Consensus       360 ~~t~~~~l~~~~~A~~~l~~~~~~gKvvl~~~  391 (392)
                       ++++|+|+|+++||+.+++++..||+|+++.
T Consensus       323 -i~~~~~l~~~~~A~~~~~~~~~~gKvvv~~~  353 (354)
T 2j8z_A          323 -LDRIYPVTEIQEAHKYMEANKNIGKIVLELP  353 (354)
T ss_dssp             -EEEEEEGGGHHHHHHHHHTTCCSSEEEEECC
T ss_pred             -cceEEcHHHHHHHHHHHHhCCCCceEEEecC
Confidence             5689999999999999999888899999875

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=1.9e-48  Score=376.81  Aligned_cols=299  Identities=31%  Similarity=0.475  Sum_probs=250.3

Q ss_pred             CCCcceeEEEEcccCCcceEEE-eccccCCCCCCCeEEEEEeEEecChHhHHhhcCCCCCCCCCCCCcCCCceeEEEEEe
Q 016265           79 TVPSEMKAWLYGEYGGVDVLKF-DEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKV  157 (392)
Q Consensus        79 ~~p~~mka~v~~~~~~~~~l~~-~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~~~p~v~G~e~~G~V~~v  157 (392)
                      .+|.+|||+++.+++.++.+++ + +.+.|+|++|||+|||.++|||++|++.+.|.++. ...+|.++|||++|+|+++
T Consensus        25 ~~~~~Mka~~~~~~g~~~~l~~~~-~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~-~~~~P~v~G~E~~G~V~~v  102 (351)
T 1yb5_A           25 TGQKLMRAVRVFEFGGPEVLKLRS-DIAVPIPKDHQVLIKVHACGVNPVETYIRSGTYSR-KPLLPYTPGSDVAGVIEAV  102 (351)
T ss_dssp             ---CEEEEEEESSCSSGGGEEEEE-EEECCCCCTTEEEEEEEEEECCHHHHHHHHTCSSC-CCCSSBCCCSCEEEEEEEE
T ss_pred             cCcceEEEEEEccCCCcceeEEee-ecCCCCCCCCEEEEEEEEEecCHHHHHHhCCCCCC-CCCCCCcCCceeEEEEEEE
Confidence            3567899999999887777888 6 89999999999999999999999999999987642 2457899999999999999


Q ss_pred             CCCCCCCCCCCEEEecccccccCCCCCCCcceeEEEecCCceeeCCCCCCHHhHhccchhHHHHHHHHH-hcCCCCCCeE
Q 016265          158 GTQVKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLE-RTGFSAGKSI  236 (392)
Q Consensus       158 G~~v~~~~vGdrV~~~~~~~~~~~~~~~G~~a~~~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~al~-~~~~~~g~~V  236 (392)
                      |++|++|++||||++...        ..|+|+||++++++.++++|+++++++||++++++.|||+++. .+++++|++|
T Consensus       103 G~~v~~~~vGdrV~~~~~--------~~G~~aey~~v~~~~~~~~P~~l~~~~aA~l~~~~~ta~~al~~~~~~~~g~~v  174 (351)
T 1yb5_A          103 GDNASAFKKGDRVFTSST--------ISGGYAEYALAADHTVYKLPEKLDFKQGAAIGIPYFTAYRALIHSACVKAGESV  174 (351)
T ss_dssp             CTTCTTCCTTCEEEESCC--------SSCSSBSEEEEEGGGEEECCTTSCHHHHTTTHHHHHHHHHHHHTTSCCCTTCEE
T ss_pred             CCCCCCCCCCCEEEEeCC--------CCCcceeEEEECHHHeEECCCCCCHHHHHhhhhHHHHHHHHHHHhhCCCCcCEE
Confidence            999999999999998642        3599999999999999999999999999999999999999996 6899999999


Q ss_pred             EEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCCccccC------CCCccEEEecCc--cHH
Q 016265          237 LVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFEDL------PEKFDVVYDAIG--QCD  308 (392)
Q Consensus       237 lI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~~~------~~~~D~vid~~G--~~~  308 (392)
                      ||+|++|++|++++|+|+. .|++|+++++++++++.++++|++.++|+.+.++.+.      .+++|++|||+|  .++
T Consensus       175 lV~GasggiG~~~~~~a~~-~Ga~Vi~~~~~~~~~~~~~~~ga~~~~d~~~~~~~~~~~~~~~~~~~D~vi~~~G~~~~~  253 (351)
T 1yb5_A          175 LVHGASGGVGLAACQIARA-YGLKILGTAGTEEGQKIVLQNGAHEVFNHREVNYIDKIKKYVGEKGIDIIIEMLANVNLS  253 (351)
T ss_dssp             EEETCSSHHHHHHHHHHHH-TTCEEEEEESSHHHHHHHHHTTCSEEEETTSTTHHHHHHHHHCTTCEEEEEESCHHHHHH
T ss_pred             EEECCCChHHHHHHHHHHH-CCCEEEEEeCChhHHHHHHHcCCCEEEeCCCchHHHHHHHHcCCCCcEEEEECCChHHHH
Confidence            9999889999999999998 5999999999999999999999999999877654321      347999999998  468


Q ss_pred             HHHHhcccCCeEEEEcCCCC---C------CceEEEEe----ecHHH----HHHHHHHHHCCCcccccCCCcccchhhHH
Q 016265          309 RAVKAIKEGGTVVALTGAVT---P------PGFRFVVT----SNGEV----LKKLNPYLESGKVKPIIDPKGPFPFSQVV  371 (392)
Q Consensus       309 ~~~~~l~~~G~iv~~g~~~~---~------~~~~~~~~----~~~~~----~~~~~~~l~~g~l~~~~~~t~~~~l~~~~  371 (392)
                      .++++++++|+++.+|....   +      ..+.+...    ...+.    ++.+.+++++|++++.  ++++|+++|++
T Consensus       254 ~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~l~~~~~~g~l~~~--i~~~~~l~~~~  331 (351)
T 1yb5_A          254 KDLSLLSHGGRVIVVGSRGTIEINPRDTMAKESSIIGVTLFSSTKEEFQQYAAALQAGMEIGWLKPV--IGSQYPLEKVA  331 (351)
T ss_dssp             HHHHHEEEEEEEEECCCCSCEEECTHHHHTTTCEEEECCGGGCCHHHHHHHHHHHHHHHHHTCCCCC--EEEEEEGGGHH
T ss_pred             HHHHhccCCCEEEEEecCCCCccCHHHHHhCCcEEEEEEeecCCHHHHHHHHHHHHHHHHCCCccCc--cceEEcHHHHH
Confidence            89999999999999985421   0      11122111    12233    4556668888888765  46899999999


Q ss_pred             HHHHH-HHhCCCCeeEEEEe
Q 016265          372 EAFSY-IETNKATGKVVIHP  390 (392)
Q Consensus       372 ~A~~~-l~~~~~~gKvvl~~  390 (392)
                      +||+. +++++..||+|+++
T Consensus       332 ~A~~~~~~~~~~~gKvvi~~  351 (351)
T 1yb5_A          332 EAHENIIHGSGATGKMILLL  351 (351)
T ss_dssp             HHHHHHHHSSCCSSEEEEEC
T ss_pred             HHHHHHHHhCCCCeEEEEeC
Confidence            99998 56667779999974

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus}

Probab=100.00  E-value=9.5e-49  Score=377.84  Aligned_cols=302  Identities=33%  Similarity=0.496  Sum_probs=256.5

Q ss_pred             eeEEEEcccCCcceEEEeccccCCCCCCCeEEEEEeEEecChHhHHhhcCCCCCCCCCCCCcCCCceeEEEEEeCCCCCC
Q 016265           84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKE  163 (392)
Q Consensus        84 mka~v~~~~~~~~~l~~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~~~p~v~G~e~~G~V~~vG~~v~~  163 (392)
                      |||+++++++.++.++++ +.+.|+|++|||||||.++|||++|++.+.|.++. ...+|.++|||++|+|+++|++|++
T Consensus         1 Mka~~~~~~g~~~~l~~~-~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~-~~~~p~v~G~E~~G~V~~vG~~v~~   78 (343)
T 2eih_A            1 MRAVVMRARGGPEVLEVA-DLPVPEPGPKEVRVRLKAAALNHLDVWVRKGVASP-KLPLPHVLGADGSGVVDAVGPGVEG   78 (343)
T ss_dssp             CEEEEECSSSSGGGEEEE-ECCCCCCCTTEEEEEEEEEECCHHHHHHHHTSSST-TCCSSEECCSEEEEEEEEECSSCCS
T ss_pred             CeEEEEecCCCCceEEEE-ecCCCCCCCCEEEEEEEEEEeCHHHHHHhcCCCCC-CCCCCcccccceEEEEEEECCCCCC
Confidence            799999999877678888 89999999999999999999999999999987642 2357899999999999999999999


Q ss_pred             CCCCCEEEecccccc------------------cCCCCCCCcceeEEEecCCceeeCCCCCCHHhHhccchhHHHHHHHH
Q 016265          164 FKEGDEVYGDINEKA------------------LEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGL  225 (392)
Q Consensus       164 ~~vGdrV~~~~~~~~------------------~~~~~~~G~~a~~~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~al  225 (392)
                      |++||||+..+...+                  ..|...+|+|+||++++++.++++|+++++++|+++++++.|||+++
T Consensus        79 ~~vGdrV~~~~~~~cg~c~~C~~g~~~~C~~~~~~G~~~~G~~aey~~v~~~~~~~~P~~~~~~~aa~l~~~~~ta~~al  158 (343)
T 2eih_A           79 FAPGDEVVINPGLSCGRCERCLAGEDNLCPRYQILGEHRHGTYAEYVVLPEANLAPKPKNLSFEEAAAIPLTFLTAWQMV  158 (343)
T ss_dssp             CCTTCEEEECCEECCSCSHHHHTTCGGGCTTCEETTTSSCCSSBSEEEEEGGGEEECCTTSCHHHHHHSHHHHHHHHHHH
T ss_pred             CCCCCEEEECCCCCcccchhhccCcccccccccccCcCCCccceeEEEeChHHeEECCCCCCHHHHhhchhhHHHHHHHH
Confidence            999999994321100                  11233479999999999999999999999999999999999999999


Q ss_pred             Hh-cCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCCcccc----C--CCCcc
Q 016265          226 ER-TGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFED----L--PEKFD  298 (392)
Q Consensus       226 ~~-~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~~----~--~~~~D  298 (392)
                      .+ +++++|++|||+|++|++|++++|+|+. .|++|+++++++++++.++++|+++++|+.+.++.+    .  .+++|
T Consensus       159 ~~~~~~~~g~~vlV~Gasg~iG~~~~~~a~~-~G~~Vi~~~~~~~~~~~~~~~ga~~~~d~~~~~~~~~~~~~~~~~~~d  237 (343)
T 2eih_A          159 VDKLGVRPGDDVLVMAAGSGVSVAAIQIAKL-FGARVIATAGSEDKLRRAKALGADETVNYTHPDWPKEVRRLTGGKGAD  237 (343)
T ss_dssp             TTTSCCCTTCEEEECSTTSTTHHHHHHHHHH-TTCEEEEEESSHHHHHHHHHHTCSEEEETTSTTHHHHHHHHTTTTCEE
T ss_pred             HHhcCCCCCCEEEEECCCchHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHhcCCCEEEcCCcccHHHHHHHHhCCCCce
Confidence            76 6899999999999889999999999998 599999999999999999999999999987665432    1  24799


Q ss_pred             EEEecCc--cHHHHHHhcccCCeEEEEcCCCCC---C--------ceEEEE--eecHHHHHHHHHHHHCCCcccccCCCc
Q 016265          299 VVYDAIG--QCDRAVKAIKEGGTVVALTGAVTP---P--------GFRFVV--TSNGEVLKKLNPYLESGKVKPIIDPKG  363 (392)
Q Consensus       299 ~vid~~G--~~~~~~~~l~~~G~iv~~g~~~~~---~--------~~~~~~--~~~~~~~~~~~~~l~~g~l~~~~~~t~  363 (392)
                      ++||++|  .++.++++++++|+++.+|.....   .        .+.+..  ....+.++++++++++|++++.  +++
T Consensus       238 ~vi~~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~g~l~~~--i~~  315 (343)
T 2eih_A          238 KVVDHTGALYFEGVIKATANGGRIAIAGASSGYEGTLPFAHVFYRQLSILGSTMASKSRLFPILRFVEEGKLKPV--VGQ  315 (343)
T ss_dssp             EEEESSCSSSHHHHHHHEEEEEEEEESSCCCSCCCCCCTTHHHHTTCEEEECCSCCGGGHHHHHHHHHHTSSCCC--EEE
T ss_pred             EEEECCCHHHHHHHHHhhccCCEEEEEecCCCCcCccCHHHHHhCCcEEEEecCccHHHHHHHHHHHHcCCCCCc--eeE
Confidence            9999998  468999999999999999865321   0        112221  1235678999999999999865  468


Q ss_pred             ccchhhHHHHHHHHHhCCCCeeEEEEe
Q 016265          364 PFPFSQVVEAFSYIETNKATGKVVIHP  390 (392)
Q Consensus       364 ~~~l~~~~~A~~~l~~~~~~gKvvl~~  390 (392)
                      +|+|+|+++||+.+++++..||+|+++
T Consensus       316 ~~~l~~~~~A~~~~~~~~~~gKvvv~~  342 (343)
T 2eih_A          316 VLPLEAAAEGHRLLEERRVFGKVVLQV  342 (343)
T ss_dssp             EEEGGGHHHHHHHHHTTCSSSEEEEEC
T ss_pred             EeeHHHHHHHHHHHHcCCCceEEEEec
Confidence            999999999999999988889999986

>3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A*

Probab=100.00  E-value=2.4e-49  Score=378.96  Aligned_cols=297  Identities=23%  Similarity=0.254  Sum_probs=252.5

Q ss_pred             eeEEEEcccCCcceEEEeccccCCCCCCCeEEEEEeEEecChHhHHhhcCCCCCCCCCCCCcCCCceeEEEEEeCCCCCC
Q 016265           84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKE  163 (392)
Q Consensus        84 mka~v~~~~~~~~~l~~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~~~p~v~G~e~~G~V~~vG~~v~~  163 (392)
                      |||+++++++.++.++++ +.+.|+|++|||+|||.++|||++|++.+.|.++. ...+|.++|||++|+|+++|  +++
T Consensus         1 MkA~~~~~~g~~~~l~~~-~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~-~~~~p~v~G~E~~G~V~~~G--v~~   76 (324)
T 3nx4_A            1 MQALILEQQDGKTLASVQ-HLEESQLPAGDVTVDVHWSSLNYKDALAITGKGKI-IRHFPMIPGIDFAGTVHASE--DPR   76 (324)
T ss_dssp             CEEEEEEESSSSEEEEEE-ECCGGGSCCCSEEEEEEEEEECHHHHHHHHTCTTC-CCSSSBCCCSEEEEEEEEES--STT
T ss_pred             CceEEEecCCCCceeeEe-ecCCCCCCCCEEEEEEEEEeCCHHHHhhhcCCCCC-CCCCCccccceeEEEEEEeC--CCC
Confidence            899999999988888999 89999999999999999999999999999997642 35689999999999999998  689


Q ss_pred             CCCCCEEEecccccccCCCCCCCcceeEEEecCCceeeCCCCCCHHhHhccchhHHHHHHHH---HhcCCCCCC-eEEEE
Q 016265          164 FKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGL---ERTGFSAGK-SILVL  239 (392)
Q Consensus       164 ~~vGdrV~~~~~~~~~~~~~~~G~~a~~~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~al---~~~~~~~g~-~VlI~  239 (392)
                      |++||||++...   ..+...+|+|+||++++++.++++|+++++++||+++++++|||+++   .+.++++++ +|||+
T Consensus        77 ~~vGdrV~~~~~---~~g~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~al~~~~~~~~~~~~g~VlV~  153 (324)
T 3nx4_A           77 FHAGQEVLLTGW---GVGENHWGGLAERARVKGDWLVALPAGLSSRNAMIIGTAGFTAMLCVMALEDAGIRPQDGEVVVT  153 (324)
T ss_dssp             CCTTCEEEEECT---TBTTTBCCSSBSEEEECGGGCEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCCEEES
T ss_pred             CCCCCEEEEccc---ccCCCCCCceeeEEecCHHHcEECCCCCCHHHHHHhhhHHHHHHHHHHHhhhcccCCCCCeEEEE
Confidence            999999998642   22334579999999999999999999999999999999999999887   356677743 49999


Q ss_pred             cCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCCcc-ccC-CCCccEEEecCc--cHHHHHHhcc
Q 016265          240 NGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNF-EDL-PEKFDVVYDAIG--QCDRAVKAIK  315 (392)
Q Consensus       240 Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~-~~~-~~~~D~vid~~G--~~~~~~~~l~  315 (392)
                      |++|++|++++|+||. .|++|++++.+++|+++++++|+++++|+++.+. .+. .+++|++|||+|  .++.++++++
T Consensus       154 Ga~G~vG~~aiqla~~-~Ga~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~  232 (324)
T 3nx4_A          154 GASGGVGSTAVALLHK-LGYQVAAVSGRESTHGYLKSLGANRILSRDEFAESRPLEKQLWAGAIDTVGDKVLAKVLAQMN  232 (324)
T ss_dssp             STTSHHHHHHHHHHHH-TTCCEEEEESCGGGHHHHHHHTCSEEEEGGGSSCCCSSCCCCEEEEEESSCHHHHHHHHHTEE
T ss_pred             CCCcHHHHHHHHHHHH-cCCEEEEEeCCHHHHHHHHhcCCCEEEecCCHHHHHhhcCCCccEEEECCCcHHHHHHHHHHh
Confidence            9889999999999998 5999999999999999999999999999876543 222 357999999999  4689999999


Q ss_pred             cCCeEEEEcCCCCC-Cc----------eEEEEe----e----cHHHHHHHHHHHHCCCcccccCCCcccchhhHHHHHHH
Q 016265          316 EGGTVVALTGAVTP-PG----------FRFVVT----S----NGEVLKKLNPYLESGKVKPIIDPKGPFPFSQVVEAFSY  376 (392)
Q Consensus       316 ~~G~iv~~g~~~~~-~~----------~~~~~~----~----~~~~~~~~~~~l~~g~l~~~~~~t~~~~l~~~~~A~~~  376 (392)
                      ++|+++.+|..... ..          +.+...    .    ..+.++++++++++|++++.   +++|+++|+++||+.
T Consensus       233 ~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~---~~~~~l~~~~~A~~~  309 (324)
T 3nx4_A          233 YGGCVAACGLAGGFALPTTVMPFILRNVRLQGVDSVMTPPARRAEAWARLVKDLPESFYAQA---ATEITLADAPKFADA  309 (324)
T ss_dssp             EEEEEEECCCTTCSEEEEESHHHHHHCCEEEECCSTTCCHHHHHHHHHHHHHHSCHHHHHHH---EEEEEGGGHHHHHHH
T ss_pred             cCCEEEEEecCCCCCCCCCHHHHhhcCeEEEEEeccccChHHHHHHHHHHHHHHHcCCCCCC---ceeEeHHHHHHHHHH
Confidence            99999999865432 11          111110    0    13567888999999999875   689999999999999


Q ss_pred             HHhCCCCeeEEEEeC
Q 016265          377 IETNKATGKVVIHPI  391 (392)
Q Consensus       377 l~~~~~~gKvvl~~~  391 (392)
                      +++++..||+|++++
T Consensus       310 ~~~~~~~gkvvv~~~  324 (324)
T 3nx4_A          310 IINNQVQGRTLVKIK  324 (324)
T ss_dssp             HHTTCCCSEEEEECC
T ss_pred             HHhCCCCceEEEecC
Confidence            999999999999875

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=100.00  E-value=1.5e-48  Score=380.58  Aligned_cols=304  Identities=24%  Similarity=0.274  Sum_probs=252.3

Q ss_pred             CCCcceeEEEEcccCCcceEEEeccccCCCCCCCeEEEEEeEEecChHhHHhhcCCCCCCCCCCCCcCCCceeEEEEEeC
Q 016265           79 TVPSEMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVG  158 (392)
Q Consensus        79 ~~p~~mka~v~~~~~~~~~l~~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~~~p~v~G~e~~G~V~~vG  158 (392)
                      .+|.+|||+++.+++++  ++++ +++.|+|++|||+|||.++|||++|++.+.|.++.  ..+|.++|||++|+|+++|
T Consensus         2 ~~p~~mkA~~~~~~~~~--l~~~-~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~--~~~P~v~GhE~~G~V~~vG   76 (373)
T 2fzw_A            2 NEVIKCKAAVAWEAGKP--LSIE-EIEVAPPKAHEVRIKIIATAVCHTDAYTLSGADPE--GCFPVILGHLGAGIVESVG   76 (373)
T ss_dssp             CCCEEEEEEEBCSTTSC--CEEE-EEEECCCCTTEEEEEEEEEECCHHHHHHHHTCCTT--CCSSBCCCCEEEEEEEEEC
T ss_pred             CCccceEEEEEecCCCC--cEEE-EeeCCCCCCCEEEEEEEEEEEchhhHHHhcCCCCC--CCCCccccccccEEEEEEC
Confidence            36788999999988754  6777 89999999999999999999999999999987642  3578999999999999999


Q ss_pred             CCCCCCCCCCEEEecccccc-------------cC--------CC------------------CCCCcceeEEEecCCce
Q 016265          159 TQVKEFKEGDEVYGDINEKA-------------LE--------GP------------------KQFGSLAEYTAVEERLL  199 (392)
Q Consensus       159 ~~v~~~~vGdrV~~~~~~~~-------------~~--------~~------------------~~~G~~a~~~~v~~~~~  199 (392)
                      ++|++|++||||++.....+             +.        |.                  ...|+|+||++++++.+
T Consensus        77 ~~V~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~g~~~~g~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~  156 (373)
T 2fzw_A           77 EGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKGLMPDGTSRFTCKGKTILHYMGTSTFSEYTVVADISV  156 (373)
T ss_dssp             TTCCSCCTTCEEEECSSCCCSCSHHHHCTTCCCCCTTHHHHHTTCCTTSCCSEEETTEEEBCCTTTCCSBSEEEEEGGGE
T ss_pred             CCCCCCCCCCEEEECCCCCCCCChHHcCcCcccCCCcccccccccccCCcccccccccccccccCCccceeEEEEchhhe
Confidence            99999999999987532100             00        10                  12599999999999999


Q ss_pred             eeCCCCCCHHhHhccchhHHHHHHHH-HhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCC-eEEEEeCCcccHHHHHhc
Q 016265          200 APKPKNLDFVQAAGLPLAIETAYEGL-ERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGA-SRVAATSSTRNLEFLKSL  277 (392)
Q Consensus       200 ~~iP~~l~~~~aa~l~~~~~ta~~al-~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~-~vv~~~~~~~~~~~~~~~  277 (392)
                      +++|+++++++||++++++.|||+++ +.+++++|++|||+| +|++|++++|+||.+ |+ +|++++++++|+++++++
T Consensus       157 ~~iP~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~G-aG~vG~~avqla~~~-Ga~~Vi~~~~~~~~~~~~~~l  234 (373)
T 2fzw_A          157 AKIDPLAPLDKVCLLGCGISTGYGAAVNTAKLEPGSVCAVFG-LGGVGLAVIMGCKVA-GASRIIGVDINKDKFARAKEF  234 (373)
T ss_dssp             EECCTTSCHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEEC-CSHHHHHHHHHHHHH-TCSEEEEECSCGGGHHHHHHH
T ss_pred             EECCCCCCHHHHhhhccHHHHHHHHHHhhcCCCCCCEEEEEC-CCHHHHHHHHHHHHc-CCCeEEEEcCCHHHHHHHHHc
Confidence            99999999999999999999999998 468899999999998 699999999999995 99 788888899999999999


Q ss_pred             CCcEEEeCCC--Ccccc----C-CCCccEEEecCcc---HHHHHHhcccC-CeEEEEcCCCCCCce-----------EEE
Q 016265          278 GADLAIDYTK--DNFED----L-PEKFDVVYDAIGQ---CDRAVKAIKEG-GTVVALTGAVTPPGF-----------RFV  335 (392)
Q Consensus       278 G~~~vi~~~~--~~~~~----~-~~~~D~vid~~G~---~~~~~~~l~~~-G~iv~~g~~~~~~~~-----------~~~  335 (392)
                      |+++++|+.+  .++.+    . .+++|+|||++|.   ++.++++++++ |+++.+|.......+           .+.
T Consensus       235 Ga~~vi~~~~~~~~~~~~v~~~~~~g~D~vid~~g~~~~~~~~~~~l~~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~i~  314 (373)
T 2fzw_A          235 GATECINPQDFSKPIQEVLIEMTDGGVDYSFECIGNVKVMRAALEACHKGWGVSVVVGVAASGEEIATRPFQLVTGRTWK  314 (373)
T ss_dssp             TCSEEECGGGCSSCHHHHHHHHTTSCBSEEEECSCCHHHHHHHHHTBCTTTCEEEECSCCCTTCCEEECTHHHHTTCEEE
T ss_pred             CCceEeccccccccHHHHHHHHhCCCCCEEEECCCcHHHHHHHHHhhccCCcEEEEEecCCCCceeeeCHHHHhcCCEEE
Confidence            9999999864  33322    1 2489999999984   58999999999 999999865421111           111


Q ss_pred             Eee-----cHHHHHHHHHHHHCCCcccccCCCcccchhhHHHHHHHHHhCCCCeeEEEEe
Q 016265          336 VTS-----NGEVLKKLNPYLESGKVKPIIDPKGPFPFSQVVEAFSYIETNKATGKVVIHP  390 (392)
Q Consensus       336 ~~~-----~~~~~~~~~~~l~~g~l~~~~~~t~~~~l~~~~~A~~~l~~~~~~gKvvl~~  390 (392)
                      ...     ..+.++++++++++|++++...++++|+|+|+++||+.+++++. +|+||++
T Consensus       315 g~~~~~~~~~~~~~~~~~l~~~g~l~~~~~i~~~~~l~~~~~A~~~~~~~~~-~kvvi~~  373 (373)
T 2fzw_A          315 GTAFGGWKSVESVPKLVSEYMSKKIKVDEFVTHNLSFDEINKAFELMHSGKS-IRTVVKI  373 (373)
T ss_dssp             ECSGGGCCHHHHHHHHHHHHHTTSSCSGGGEEEEEEGGGHHHHHHHHHHTCC-SEEEEEC
T ss_pred             EeccCCCCcHHHHHHHHHHHHcCCCCchheEeEEeeHHHHHHHHHHHhCCCc-ceEEEeC
Confidence            111     24678999999999999875556789999999999999998876 6999875

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=100.00  E-value=1.7e-48  Score=380.42  Aligned_cols=303  Identities=20%  Similarity=0.278  Sum_probs=251.4

Q ss_pred             CCCcceeEEEEcccCCcceEEEeccccCCCCCCCeEEEEEeEEecChHhHHhhcCCCCCCCCCCCCcCCCceeEEEEEeC
Q 016265           79 TVPSEMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVG  158 (392)
Q Consensus        79 ~~p~~mka~v~~~~~~~~~l~~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~~~p~v~G~e~~G~V~~vG  158 (392)
                      ..|.+|||+++.+++.+  ++++ +++.|+|++|||+|||.++|||++|++.+.|.++.   .+|.++|||++|+|+++|
T Consensus         4 ~~~~~mkA~~~~~~g~~--l~~~-~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~---~~P~v~GhE~~G~V~~vG   77 (374)
T 2jhf_A            4 GKVIKCKAAVLWEEKKP--FSIE-EVEVAPPKAHEVRIKMVATGICRSDDHVVSGTLVT---PLPVIAGHEAAGIVESIG   77 (374)
T ss_dssp             TSCEEEEEEEBCSTTSC--CEEE-EEEECCCCTTEEEEEEEEEECCHHHHHHHHTSSCC---CSSBCCCCSEEEEEEEEC
T ss_pred             CCceeEEEEEEecCCCc--eEEE-EccCCCCCCCeEEEEEeEEeechhhHHHHcCCCCC---CCCcccCcCceEEEEEEC
Confidence            45778999999988754  6777 89999999999999999999999999999987642   278999999999999999


Q ss_pred             CCCCCCCCCCEEEecccccc-------------cC--------CC------------------CCCCcceeEEEecCCce
Q 016265          159 TQVKEFKEGDEVYGDINEKA-------------LE--------GP------------------KQFGSLAEYTAVEERLL  199 (392)
Q Consensus       159 ~~v~~~~vGdrV~~~~~~~~-------------~~--------~~------------------~~~G~~a~~~~v~~~~~  199 (392)
                      ++|++|++||||++.....+             +.        |.                  ...|+|+||++++++.+
T Consensus        78 ~~v~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~g~~~~g~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~  157 (374)
T 2jhf_A           78 EGVTTVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLKNDLSMPRGTMQDGTSRFTCRGKPIHHFLGTSTFSQYTVVDEISV  157 (374)
T ss_dssp             TTCCSCCTTCEEEECSSCCCSCSHHHHSTTCCCCTTCSSSSCCCSCTTSCCSEEETTEEEBCSTTTCCSBSEEEEEGGGE
T ss_pred             CCCCCCCCCCEEEECCCCCCCCCccccCCCcCcCCCCccccccccccCCcccccccccccccccCCccCeeEEEEchHHe
Confidence            99999999999987532100             00        10                  02499999999999999


Q ss_pred             eeCCCCCCHHhHhccchhHHHHHHHH-HhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCC-eEEEEeCCcccHHHHHhc
Q 016265          200 APKPKNLDFVQAAGLPLAIETAYEGL-ERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGA-SRVAATSSTRNLEFLKSL  277 (392)
Q Consensus       200 ~~iP~~l~~~~aa~l~~~~~ta~~al-~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~-~vv~~~~~~~~~~~~~~~  277 (392)
                      +++|+++++++|+++++++.|||+++ +.+++++|++|||+| +|++|++++|+||.+ |+ +|++++++++|+++++++
T Consensus       158 ~~iP~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~G-aG~vG~~a~qla~~~-Ga~~Vi~~~~~~~~~~~~~~l  235 (374)
T 2jhf_A          158 AKIDAASPLEKVCLIGCGFSTGYGSAVKVAKVTQGSTCAVFG-LGGVGLSVIMGCKAA-GAARIIGVDINKDKFAKAKEV  235 (374)
T ss_dssp             EECCTTCCHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEEC-CSHHHHHHHHHHHHT-TCSEEEEECSCGGGHHHHHHT
T ss_pred             EECCCCCCHHHhhhhccHHHHHHHHHHhccCCCCCCEEEEEC-CCHHHHHHHHHHHHc-CCCeEEEEcCCHHHHHHHHHh
Confidence            99999999999999999999999998 468899999999998 799999999999994 99 788888899999999999


Q ss_pred             CCcEEEeCCC--Ccccc----C-CCCccEEEecCcc---HHHHHHhcccC-CeEEEEcCCCCCCce-----------EEE
Q 016265          278 GADLAIDYTK--DNFED----L-PEKFDVVYDAIGQ---CDRAVKAIKEG-GTVVALTGAVTPPGF-----------RFV  335 (392)
Q Consensus       278 G~~~vi~~~~--~~~~~----~-~~~~D~vid~~G~---~~~~~~~l~~~-G~iv~~g~~~~~~~~-----------~~~  335 (392)
                      |+++++|+.+  +++.+    . .+++|+|||++|.   ++.++++++++ |+++.+|.......+           .+.
T Consensus       236 Ga~~vi~~~~~~~~~~~~~~~~~~~g~D~vid~~g~~~~~~~~~~~l~~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~i~  315 (374)
T 2jhf_A          236 GATECVNPQDYKKPIQEVLTEMSNGGVDFSFEVIGRLDTMVTALSCCQEAYGVSVIVGVPPDSQNLSMNPMLLLSGRTWK  315 (374)
T ss_dssp             TCSEEECGGGCSSCHHHHHHHHTTSCBSEEEECSCCHHHHHHHHHHBCTTTCEEEECSCCCTTCCEEECTHHHHTTCEEE
T ss_pred             CCceEecccccchhHHHHHHHHhCCCCcEEEECCCCHHHHHHHHHHhhcCCcEEEEeccCCCCCccccCHHHHhcCCeEE
Confidence            9999999864  33322    1 2389999999984   58899999999 999999865421111           111


Q ss_pred             Eee-----cHHHHHHHHHHHHCCCcccccCCCcccchhhHHHHHHHHHhCCCCeeEEEEe
Q 016265          336 VTS-----NGEVLKKLNPYLESGKVKPIIDPKGPFPFSQVVEAFSYIETNKATGKVVIHP  390 (392)
Q Consensus       336 ~~~-----~~~~~~~~~~~l~~g~l~~~~~~t~~~~l~~~~~A~~~l~~~~~~gKvvl~~  390 (392)
                      ...     ..+.++++++++++|++++...++++|+|+|+++||+.+++++. +|+||+|
T Consensus       316 g~~~~~~~~~~~~~~~~~l~~~g~i~~~~~i~~~~~l~~~~~A~~~~~~~~~-~Kvvi~~  374 (374)
T 2jhf_A          316 GAIFGGFKSKDSVPKLVADFMAKKFALDPLITHVLPFEKINEGFDLLRSGES-IRTILTF  374 (374)
T ss_dssp             ECSGGGCCHHHHHHHHHHHHHTTSSCCGGGEEEEEEGGGHHHHHHHHHTTCC-SEEEEEC
T ss_pred             EeccCCCChHHHHHHHHHHHHcCCCCchhheEEEEeHHHHHHHHHHHHCCCc-ceEEEeC
Confidence            111     24678999999999999875556789999999999999998875 6999875

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=2.7e-48  Score=379.04  Aligned_cols=305  Identities=19%  Similarity=0.207  Sum_probs=252.9

Q ss_pred             CCCCCcceeEEEEcccCCcceEEEeccccCCCCCCCeEEEEEeEEecChHhHH-hhcCCCCCCCCCCCCcCCCceeEEEE
Q 016265           77 VGTVPSEMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGK-RRQGKFKATDSPLPTVPGYDVAGVVV  155 (392)
Q Consensus        77 ~~~~p~~mka~v~~~~~~~~~l~~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~-~~~g~~~~~~~~~p~v~G~e~~G~V~  155 (392)
                      +..+|.+|||+++.+++++  ++++ +.+.|+|++|||+|||.++|||++|++ .+.|.++   ..+|.++|||++|+|+
T Consensus         2 ~~~~~~~mka~~~~~~~~~--l~~~-~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~~g~~~---~~~P~v~GhE~~G~V~   75 (374)
T 1cdo_A            2 TVGKVIKCKAAVAWEANKP--LVIE-EIEVDVPHANEIRIKIIATGVCHTDLYHLFEGKHK---DGFPVVLGHEGAGIVE   75 (374)
T ss_dssp             CTTSCEEEEEEEBCSTTSC--CEEE-EEEECCCCTTEEEEEEEEEECCHHHHHHHHTTCCT---TSCSEECCCCEEEEEE
T ss_pred             CCCCcceeEEEEEecCCCC--eEEE-EeeCCCCCCCEEEEEEeEEeechhhHHHHhCCCCC---CCCCcccCccceEEEE
Confidence            3456788999999988754  6777 899999999999999999999999999 8988754   4578999999999999


Q ss_pred             EeCCCCCCCCCCCEEEecccccc-------------cC--------CC------------------CCCCcceeEEEecC
Q 016265          156 KVGTQVKEFKEGDEVYGDINEKA-------------LE--------GP------------------KQFGSLAEYTAVEE  196 (392)
Q Consensus       156 ~vG~~v~~~~vGdrV~~~~~~~~-------------~~--------~~------------------~~~G~~a~~~~v~~  196 (392)
                      ++|++|++|++||||++.....+             +.        |.                  ...|+|+||+++++
T Consensus        76 ~vG~~V~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~G~~~~g~~~~~~~g~~~~~~~~~G~~aey~~v~~  155 (374)
T 1cdo_A           76 SVGPGVTEFQPGEKVIPLFISQCGECRFCQSPKTNQCVKGWANESPDVMSPKETRFTCKGRKVLQFLGTSTFSQYTVVNQ  155 (374)
T ss_dssp             EECTTCCSCCTTCEEEECSSCCCSSSHHHHCTTCCCCSCSGGGTCTTTTSCSCCCEEETTEEEEEGGGTCCSBSEEEEEG
T ss_pred             EECCCCccCCCCCEEEeCCCCCCCCChhhcCCCcCcCCCcccccccccccCCccccccCCcccccccCCccceeEEEEch
Confidence            99999999999999987532100             00        11                  02489999999999


Q ss_pred             CceeeCCCCCCHHhHhccchhHHHHHHHH-HhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCC-eEEEEeCCcccHHHH
Q 016265          197 RLLAPKPKNLDFVQAAGLPLAIETAYEGL-ERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGA-SRVAATSSTRNLEFL  274 (392)
Q Consensus       197 ~~~~~iP~~l~~~~aa~l~~~~~ta~~al-~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~-~vv~~~~~~~~~~~~  274 (392)
                      +.++++|+++++++||.+++++.|||+++ +.+++++|++|||+| +|++|++++|+||. .|+ +|++++.+++|++++
T Consensus       156 ~~~~~~P~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~G-aG~vG~~a~qla~~-~Ga~~Vi~~~~~~~~~~~~  233 (374)
T 1cdo_A          156 IAVAKIDPSAPLDTVCLLGCGVSTGFGAAVNTAKVEPGSTCAVFG-LGAVGLAAVMGCHS-AGAKRIIAVDLNPDKFEKA  233 (374)
T ss_dssp             GGEEECCTTCCHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEEC-CSHHHHHHHHHHHH-TTCSEEEEECSCGGGHHHH
T ss_pred             hheEECCCCCCHHHHhhhccHHHHHHHHHHhccCCCCCCEEEEEC-CCHHHHHHHHHHHH-cCCCEEEEEcCCHHHHHHH
Confidence            99999999999999999999999999998 568999999999998 69999999999999 499 788888899999999


Q ss_pred             HhcCCcEEEeCCC--Ccccc----C-CCCccEEEecCcc---HHHHHHhcccC-CeEEEEcCCCC-CCce---------E
Q 016265          275 KSLGADLAIDYTK--DNFED----L-PEKFDVVYDAIGQ---CDRAVKAIKEG-GTVVALTGAVT-PPGF---------R  333 (392)
Q Consensus       275 ~~~G~~~vi~~~~--~~~~~----~-~~~~D~vid~~G~---~~~~~~~l~~~-G~iv~~g~~~~-~~~~---------~  333 (392)
                      +++|+++++|+.+  +++.+    . .+++|++||++|.   ++.++++++++ |+++.+|.... +..+         .
T Consensus       234 ~~lGa~~vi~~~~~~~~~~~~~~~~~~~g~D~vid~~g~~~~~~~~~~~l~~~~G~iv~~G~~~~~~~~~~~~~~~~~~~  313 (374)
T 1cdo_A          234 KVFGATDFVNPNDHSEPISQVLSKMTNGGVDFSLECVGNVGVMRNALESCLKGWGVSVLVGWTDLHDVATRPIQLIAGRT  313 (374)
T ss_dssp             HHTTCCEEECGGGCSSCHHHHHHHHHTSCBSEEEECSCCHHHHHHHHHTBCTTTCEEEECSCCSSSCEEECHHHHHTTCE
T ss_pred             HHhCCceEEeccccchhHHHHHHHHhCCCCCEEEECCCCHHHHHHHHHHhhcCCcEEEEEcCCCCCCcccCHHHHhcCCe
Confidence            9999999999864  33322    1 2489999999984   58999999999 99999986542 1111         1


Q ss_pred             EEEee-----cHHHHHHHHHHHHCCCcccccCCCcccchhhHHHHHHHHHhCCCCeeEEEEe
Q 016265          334 FVVTS-----NGEVLKKLNPYLESGKVKPIIDPKGPFPFSQVVEAFSYIETNKATGKVVIHP  390 (392)
Q Consensus       334 ~~~~~-----~~~~~~~~~~~l~~g~l~~~~~~t~~~~l~~~~~A~~~l~~~~~~gKvvl~~  390 (392)
                      +....     ..+.++++++++++|++++...++++|+|+|+++||+.+++++. +|+||+|
T Consensus       314 i~g~~~~~~~~~~~~~~~~~l~~~g~l~~~~~i~~~~~l~~~~~A~~~~~~~~~-~kvvi~~  374 (374)
T 1cdo_A          314 WKGSMFGGFKGKDGVPKMVKAYLDKKVKLDEFITHRMPLESVNDAIDLMKHGKC-IRTVLSL  374 (374)
T ss_dssp             EEECSGGGCCHHHHHHHHHHHHHTTSSCCGGGEEEEEEGGGHHHHHHHHHTTCC-SEEEEEC
T ss_pred             EEEEecCCCCcHHHHHHHHHHHHcCCCChHHheeeEecHHHHHHHHHHHHCCCe-eEEEEeC
Confidence            11111     24678999999999999875556789999999999999998875 6999875

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*

Probab=100.00  E-value=3.4e-48  Score=375.91  Aligned_cols=303  Identities=22%  Similarity=0.308  Sum_probs=252.5

Q ss_pred             CCCcceeEEEEcccCCcceEEEeccccCCCCCCCeEEEEEeEEecChHhHHhhcCCCCCCCCCCCCcCCCceeEEEEEeC
Q 016265           79 TVPSEMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVG  158 (392)
Q Consensus        79 ~~p~~mka~v~~~~~~~~~l~~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~~~p~v~G~e~~G~V~~vG  158 (392)
                      .++++|+++++.+..  +.++++ +++.|+|++|||+|||.++|||++|++.+.|.++.  ..+|.++|||++|+|+++|
T Consensus         5 ~~~m~~~a~~~~~~~--~~l~~~-~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~--~~~P~v~GhE~~G~V~~vG   79 (357)
T 2cf5_A            5 EAERKTTGWAARDPS--GILSPY-TYTLRETGPEDVNIRIICCGICHTDLHQTKNDLGM--SNYPMVPGHEVVGEVVEVG   79 (357)
T ss_dssp             -CCCEEEEEEECSTT--CCEEEE-EEECCCCCTTEEEEEEEEEEECHHHHHHHTCTTTC--CCSSBCCCCEEEEEEEEEC
T ss_pred             cCcceeEEEEEccCC--CCcEEE-EecCCCCCCCEEEEEEEEEeecchhhhhhcCCCCC--CCCCeecCcceeEEEEEEC
Confidence            456678888776543  448888 89999999999999999999999999999987642  4578999999999999999


Q ss_pred             CCCCCCCCCCEEEecc-----ccc--cc-------------------CCCCCCCcceeEEEecCCceeeCCCCCCHHhHh
Q 016265          159 TQVKEFKEGDEVYGDI-----NEK--AL-------------------EGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAA  212 (392)
Q Consensus       159 ~~v~~~~vGdrV~~~~-----~~~--~~-------------------~~~~~~G~~a~~~~v~~~~~~~iP~~l~~~~aa  212 (392)
                      ++|++|++||||+...     ..+  +.                   .+...+|+|+||++++++.++++|+++++++||
T Consensus        80 ~~v~~~~vGdrV~~~~~~~~Cg~C~~c~~g~~~~C~~~~~~~~~~~~~g~~~~G~~aey~~v~~~~~~~~P~~ls~~~aa  159 (357)
T 2cf5_A           80 SDVSKFTVGDIVGVGCLVGCCGGCSPCERDLEQYCPKKIWSYNDVYINGQPTQGGFAKATVVHQKFVVKIPEGMAVEQAA  159 (357)
T ss_dssp             SSCCSCCTTCEEEECSEEECCSSSHHHHTTCGGGCTTCEETTTSBCTTSCBCCCSSBSCEEEEGGGEEECCSSCCHHHHT
T ss_pred             CCCCCCCCCCEEEEcCCCCCCCCChHHhCcCcccCCCccccccccccCCCCCCCccccEEEechhhEEECcCCCCHHHhh
Confidence            9999999999997532     100  00                   012247999999999999999999999999999


Q ss_pred             ccchhHHHHHHHHHhcCCC-CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHH-hcCCcEEEeCCCCc-
Q 016265          213 GLPLAIETAYEGLERTGFS-AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLK-SLGADLAIDYTKDN-  289 (392)
Q Consensus       213 ~l~~~~~ta~~al~~~~~~-~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~-~~G~~~vi~~~~~~-  289 (392)
                      .+++++.|||+++++.+++ +|++|||+| +|++|++++|+||.+ |++|++++.+++|+++++ ++|+++++|+.+.+ 
T Consensus       160 ~l~~~~~ta~~~l~~~~~~~~g~~VlV~G-aG~vG~~a~qlak~~-Ga~Vi~~~~~~~~~~~~~~~lGa~~vi~~~~~~~  237 (357)
T 2cf5_A          160 PLLCAGVTVYSPLSHFGLKQPGLRGGILG-LGGVGHMGVKIAKAM-GHHVTVISSSNKKREEALQDLGADDYVIGSDQAK  237 (357)
T ss_dssp             GGGTHHHHHHHHHHHTSTTSTTCEEEEEC-CSHHHHHHHHHHHHH-TCEEEEEESSTTHHHHHHTTSCCSCEEETTCHHH
T ss_pred             hhhhhHHHHHHHHHhcCCCCCCCEEEEEC-CCHHHHHHHHHHHHC-CCeEEEEeCChHHHHHHHHHcCCceeeccccHHH
Confidence            9999999999999988898 999999998 799999999999995 999999999999999988 99999999987643 


Q ss_pred             cccCCCCccEEEecCc---cHHHHHHhcccCCeEEEEcCCCCCCc-e---------EEEE--eecHHHHHHHHHHHHCCC
Q 016265          290 FEDLPEKFDVVYDAIG---QCDRAVKAIKEGGTVVALTGAVTPPG-F---------RFVV--TSNGEVLKKLNPYLESGK  354 (392)
Q Consensus       290 ~~~~~~~~D~vid~~G---~~~~~~~~l~~~G~iv~~g~~~~~~~-~---------~~~~--~~~~~~~~~~~~~l~~g~  354 (392)
                      +.+..+++|+|||++|   .++.++++++++|+++.+|....+.. +         .+..  ....+.++++++++++|+
T Consensus       238 ~~~~~~g~D~vid~~g~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~l~~~g~  317 (357)
T 2cf5_A          238 MSELADSLDYVIDTVPVHHALEPYLSLLKLDGKLILMGVINNPLQFLTPLLMLGRKVITGSFIGSMKETEEMLEFCKEKG  317 (357)
T ss_dssp             HHHSTTTEEEEEECCCSCCCSHHHHTTEEEEEEEEECSCCSSCCCCCHHHHHHHTCEEEECCSCCHHHHHHHHHHHHHTT
T ss_pred             HHHhcCCCCEEEECCCChHHHHHHHHHhccCCEEEEeCCCCCCccccCHHHHhCccEEEEEccCCHHHHHHHHHHHHcCC
Confidence            3344568999999998   36899999999999999986542211 1         1111  123577899999999999


Q ss_pred             cccccCCCcccchhhHHHHHHHHHhCCCCeeEEEEeC
Q 016265          355 VKPIIDPKGPFPFSQVVEAFSYIETNKATGKVVIHPI  391 (392)
Q Consensus       355 l~~~~~~t~~~~l~~~~~A~~~l~~~~~~gKvvl~~~  391 (392)
                      +++..   ++||++|+++||+.+++++..||+|+++.
T Consensus       318 l~~~~---~~~~l~~~~~A~~~~~~~~~~gKvvi~~~  351 (357)
T 2cf5_A          318 LSSII---EVVKMDYVNTAFERLEKNDVRYRFVVDVE  351 (357)
T ss_dssp             CCCCE---EEEEGGGHHHHHHHHHTTCSSSEEEEETT
T ss_pred             CCCce---EEEeHHHHHHHHHHHHCCCCceEEEEeCC
Confidence            98752   68999999999999999988899999874

>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens}

Probab=100.00  E-value=1.6e-48  Score=380.69  Aligned_cols=302  Identities=34%  Similarity=0.573  Sum_probs=253.6

Q ss_pred             CCCCcceeEEEEcccCCcceEEE-eccccCCCC-CCCeEEEEEeEEecChHhHHhhcCCCCC-------------CCCCC
Q 016265           78 GTVPSEMKAWLYGEYGGVDVLKF-DEKVTVPQV-KEDQVLIKVVAAALNPVDGKRRQGKFKA-------------TDSPL  142 (392)
Q Consensus        78 ~~~p~~mka~v~~~~~~~~~l~~-~~~~~~p~~-~~~eVlV~v~~~~i~~~D~~~~~g~~~~-------------~~~~~  142 (392)
                      ..++.+|||+++.+++.++.+++ + +.+.|+| ++|||+|||.++|||++|++.+.|..+.             ....+
T Consensus        16 ~~~~~~mka~~~~~~g~~~~l~~~~-~~p~P~~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~~~~~~~~~~~~~~~~~~~   94 (375)
T 2vn8_A           16 ENLYFQSMAWVIDKYGKNEVLRFTQ-NMMMPIIHYPNEVIVKVHAASVNPIDVNMRSGYGATALNMKRDPLHVKIKGEEF   94 (375)
T ss_dssp             --CCCCEEEEEBSSCCSGGGCEEEE-EECCCCCCSTTEEEEEEEEEEECHHHHHHHTTTTHHHHHHHHCTTCCSCTTTTC
T ss_pred             cccCccceeEEeccCCCccceEEec-cccCCCCCCCCEEEEEEEEEEcCHHHHHHhccCccccccccccccccccccccC
Confidence            35778899999999987767888 7 8899985 9999999999999999999999886321             11237


Q ss_pred             CCcCCCceeEEEEEeCCCCCCCCCCCEEEecccccccCCCCCCCcceeEEEecCCceeeCCCCCCHHhHhccchhHHHHH
Q 016265          143 PTVPGYDVAGVVVKVGTQVKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAY  222 (392)
Q Consensus       143 p~v~G~e~~G~V~~vG~~v~~~~vGdrV~~~~~~~~~~~~~~~G~~a~~~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~  222 (392)
                      |.++|||++|+|+++|++|++|++||||++...      ...+|+|+||++++++.++++|+++++++||++++++.|||
T Consensus        95 P~v~G~E~~G~V~~vG~~V~~~~vGDrV~~~~~------~~~~G~~aey~~v~~~~~~~iP~~ls~~~Aa~l~~~~~tA~  168 (375)
T 2vn8_A           95 PLTLGRDVSGVVMECGLDVKYFKPGDEVWAAVP------PWKQGTLSEFVVVSGNEVSHKPKSLTHTQAASLPYVALTAW  168 (375)
T ss_dssp             SBCCCCEEEEEEEEECTTCCSCCTTCEEEEECC------TTSCCSSBSEEEEEGGGEEECCTTSCHHHHTTSHHHHHHHH
T ss_pred             CcccceeeeEEEEEeCCCCCCCCCCCEEEEecC------CCCCccceeEEEEcHHHeeeCCCCCCHHHHhhhHHHHHHHH
Confidence            899999999999999999999999999998653      12369999999999999999999999999999999999999


Q ss_pred             HHHH-hcC----CCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCCcccc-C--C
Q 016265          223 EGLE-RTG----FSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFED-L--P  294 (392)
Q Consensus       223 ~al~-~~~----~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~~-~--~  294 (392)
                      +++. .++    +++|++|||+||+|++|++++|+|+. .|++|++++ +++|+++++++|+++++|+.+.++.+ +  .
T Consensus       169 ~al~~~~~~~~~~~~g~~VlV~Ga~G~vG~~~~qla~~-~Ga~Vi~~~-~~~~~~~~~~lGa~~v~~~~~~~~~~~~~~~  246 (375)
T 2vn8_A          169 SAINKVGGLNDKNCTGKRVLILGASGGVGTFAIQVMKA-WDAHVTAVC-SQDASELVRKLGADDVIDYKSGSVEEQLKSL  246 (375)
T ss_dssp             HHHTTTTCCCTTTCTTCEEEEETTTSHHHHHHHHHHHH-TTCEEEEEE-CGGGHHHHHHTTCSEEEETTSSCHHHHHHTS
T ss_pred             HHHHHhcccccccCCCCEEEEECCCCHHHHHHHHHHHh-CCCEEEEEe-ChHHHHHHHHcCCCEEEECCchHHHHHHhhc
Confidence            9994 678    89999999999999999999999998 499888777 67899999999999999998766533 1  2


Q ss_pred             CCccEEEecCcc--H--HHHHHhcccCCeEEEEcCCCCC---------------------------CceEEEE---eecH
Q 016265          295 EKFDVVYDAIGQ--C--DRAVKAIKEGGTVVALTGAVTP---------------------------PGFRFVV---TSNG  340 (392)
Q Consensus       295 ~~~D~vid~~G~--~--~~~~~~l~~~G~iv~~g~~~~~---------------------------~~~~~~~---~~~~  340 (392)
                      .++|++|||+|.  .  +.++++++++|+++.+|.....                           ....+..   ....
T Consensus       247 ~g~D~vid~~g~~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  326 (375)
T 2vn8_A          247 KPFDFILDNVGGSTETWAPDFLKKWSGATYVTLVTPFLLNMDRLGIADGMLQTGVTVGSKALKHFWKGVHYRWAFFMASG  326 (375)
T ss_dssp             CCBSEEEESSCTTHHHHGGGGBCSSSCCEEEESCCSHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCEEEECCCCCCH
T ss_pred             CCCCEEEECCCChhhhhHHHHHhhcCCcEEEEeCCCcccccccccccchhheeehhhccccccccccCcceEEEEeCCCH
Confidence            589999999984  3  6788899999999999854310                           1111111   1235


Q ss_pred             HHHHHHHHHHHCCCcccccCCCcccchhhHHHHHHHHHhCCCCeeEEEEe
Q 016265          341 EVLKKLNPYLESGKVKPIIDPKGPFPFSQVVEAFSYIETNKATGKVVIHP  390 (392)
Q Consensus       341 ~~~~~~~~~l~~g~l~~~~~~t~~~~l~~~~~A~~~l~~~~~~gKvvl~~  390 (392)
                      +.++++++++++|++++.  ++++|||+|+++||+.+++++..||+|+++
T Consensus       327 ~~~~~~~~l~~~g~l~~~--i~~~~~l~~~~~A~~~~~~~~~~gKvvi~~  374 (375)
T 2vn8_A          327 PCLDDIAELVDAGKIRPV--IEQTFPFSKVPEAFLKVERGHARGKTVINV  374 (375)
T ss_dssp             HHHHHHHHHHHTTSCCCC--EEEEEEGGGHHHHHHHHHHCCCSSEEEEEC
T ss_pred             HHHHHHHHHHHCCCcccC--cCeEECHHHHHHHHHHHHcCCCCCeEEEEe
Confidence            678999999999999864  458999999999999999998889999976

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=100.00  E-value=3.9e-49  Score=381.32  Aligned_cols=302  Identities=25%  Similarity=0.290  Sum_probs=250.4

Q ss_pred             cceeEEEEcccCCcceEEEeccccCCCCCCCeEEEEEeEEecChHhHHhhcC-CCCCCCCCCCCcCCCceeEEEEEeCCC
Q 016265           82 SEMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQG-KFKATDSPLPTVPGYDVAGVVVKVGTQ  160 (392)
Q Consensus        82 ~~mka~v~~~~~~~~~l~~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~g-~~~~~~~~~p~v~G~e~~G~V~~vG~~  160 (392)
                      .+|||+++++++.  .++++ ++|.|+|++|||||||.++|||++|++.+.| .++.....+|.++|||++|+|+++|++
T Consensus         3 ~~mka~~~~~~g~--~l~~~-~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~p~v~G~E~~G~V~~vG~~   79 (348)
T 2d8a_A            3 EKMVAIMKTKPGY--GAELV-EVDVPKPGPGEVLIKVLATSICGTDLHIYEWNEWAQSRIKPPQIMGHEVAGEVVEIGPG   79 (348)
T ss_dssp             CEEEEEEECSSSS--SCEEE-EEECCCCCTTEEEEEEEEEECCHHHHHHHHTCTTHHHHCCSSEECCCEEEEEEEEECTT
T ss_pred             CcceEEEEECCCC--CEEEE-ECCCCCCCcCEEEEEEeEEEecHHHHHHHcCCCCCcccCCCCCccCccceEEEEEECCC
Confidence            4699999998884  37788 8999999999999999999999999999998 432111357899999999999999999


Q ss_pred             CCCCCCCCEEEecccccc------------------cCCCCCCCcceeEEEecCCceeeCCCCCCHHhHhccchhHHHHH
Q 016265          161 VKEFKEGDEVYGDINEKA------------------LEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAY  222 (392)
Q Consensus       161 v~~~~vGdrV~~~~~~~~------------------~~~~~~~G~~a~~~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~  222 (392)
                      |++|++||||++.....+                  ..|...+|+|+||++++++.++++|+++++++||.+. ++.|||
T Consensus        80 v~~~~vGdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~g~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~~~-~~~ta~  158 (348)
T 2d8a_A           80 VEGIEVGDYVSVETHIVCGKCYACRRGQYHVCQNTKIFGVDTDGVFAEYAVVPAQNIWKNPKSIPPEYATLQE-PLGNAV  158 (348)
T ss_dssp             CCSCCTTCEEEECCEECCSCCC------------CEETTTSSCCSSBSEEEEEGGGEEECCTTSCHHHHTTHH-HHHHHH
T ss_pred             CCcCCCCCEEEEcCCCCCCCChhhhCcCcccCCCCCeecCCCCCcCcceEEeChHHeEECCCCCCHHHHHhhh-HHHHHH
Confidence            999999999987532110                  1223357999999999999999999999999998774 777999


Q ss_pred             HHHHhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCC-eEEEEeCCcccHHHHHhcCCcEEEeCCCCcccc----C--CC
Q 016265          223 EGLERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGA-SRVAATSSTRNLEFLKSLGADLAIDYTKDNFED----L--PE  295 (392)
Q Consensus       223 ~al~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~-~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~~----~--~~  295 (392)
                      ++++++++ +|++|||+|+ |++|++++|+||. .|+ +|++++++++|+++++++|+++++|++++++.+    .  .+
T Consensus       159 ~~l~~~~~-~g~~VlV~Ga-G~vG~~~~q~a~~-~Ga~~Vi~~~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~v~~~~~g~  235 (348)
T 2d8a_A          159 DTVLAGPI-SGKSVLITGA-GPLGLLGIAVAKA-SGAYPVIVSEPSDFRRELAKKVGADYVINPFEEDVVKEVMDITDGN  235 (348)
T ss_dssp             HHHTTSCC-TTCCEEEECC-SHHHHHHHHHHHH-TTCCSEEEECSCHHHHHHHHHHTCSEEECTTTSCHHHHHHHHTTTS
T ss_pred             HHHHhcCC-CCCEEEEECC-CHHHHHHHHHHHH-cCCCEEEEECCCHHHHHHHHHhCCCEEECCCCcCHHHHHHHHcCCC
Confidence            99988889 9999999996 9999999999998 499 899999999999999999999999988766533    1  34


Q ss_pred             CccEEEecCcc---HHHHHHhcccCCeEEEEcCCCCCCc-----------eEEEE--eec-HHHHHHHHHHHHCCCcccc
Q 016265          296 KFDVVYDAIGQ---CDRAVKAIKEGGTVVALTGAVTPPG-----------FRFVV--TSN-GEVLKKLNPYLESGKVKPI  358 (392)
Q Consensus       296 ~~D~vid~~G~---~~~~~~~l~~~G~iv~~g~~~~~~~-----------~~~~~--~~~-~~~~~~~~~~l~~g~l~~~  358 (392)
                      ++|+|||++|.   ++.++++++++|+++.+|....+..           +.+..  ... .+.++++++++++|+++..
T Consensus       236 g~D~vid~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~l~~~g~i~~~  315 (348)
T 2d8a_A          236 GVDVFLEFSGAPKALEQGLQAVTPAGRVSLLGLYPGKVTIDFNNLIIFKALTIYGITGRHLWETWYTVSRLLQSGKLNLD  315 (348)
T ss_dssp             CEEEEEECSCCHHHHHHHHHHEEEEEEEEECCCCSSCCCCCHHHHTTTTTCEEEECCCCCSHHHHHHHHHHHHHTCCCCT
T ss_pred             CCCEEEECCCCHHHHHHHHHHHhcCCEEEEEccCCCCcccCchHHHHhCCcEEEEecCCCcHHHHHHHHHHHHcCCCChH
Confidence            79999999984   5889999999999999986542111           12221  112 6789999999999998665


Q ss_pred             cCCCcccc-hhhHHHHHHHHHhCCCCeeEEEEeC
Q 016265          359 IDPKGPFP-FSQVVEAFSYIETNKATGKVVIHPI  391 (392)
Q Consensus       359 ~~~t~~~~-l~~~~~A~~~l~~~~~~gKvvl~~~  391 (392)
                      ..++++|+ |+|+++||+.+++ ...||+||+++
T Consensus       316 ~~i~~~~~gl~~~~~A~~~~~~-~~~gKvvi~~~  348 (348)
T 2d8a_A          316 PIITHKYKGFDKYEEAFELMRA-GKTGKVVFMLK  348 (348)
T ss_dssp             TTEEEEEESSTTHHHHHHHHHT-TCCSEEEEEC-
T ss_pred             HhheeeCCCHHHHHHHHHHHhC-CCceEEEEeeC
Confidence            55678999 9999999999977 56799999874

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=2.3e-48  Score=378.60  Aligned_cols=301  Identities=22%  Similarity=0.245  Sum_probs=250.7

Q ss_pred             CcceeEEEEcccCCcceEEEeccccCCCCCCCeEEEEEeEEecChHhHHhhcCCCCCCCCCCCCcCCCceeEEEEEeCCC
Q 016265           81 PSEMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQ  160 (392)
Q Consensus        81 p~~mka~v~~~~~~~~~l~~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~~~p~v~G~e~~G~V~~vG~~  160 (392)
                      ..+||++++.++++.  ++++ ++|.|+|++|||||||.++|||++|++.+.|.++.  ..+|.++|||++|+|+++|++
T Consensus        20 ~~~~~a~~~~~~~~~--l~~~-~~p~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~--~~~P~v~GhE~~G~V~~vG~~   94 (369)
T 1uuf_A           20 GLKIKAVGAYSAKQP--LEPM-DITRREPGPNDVKIEIAYCGVCHSDLHQVRSEWAG--TVYPCVPGHEIVGRVVAVGDQ   94 (369)
T ss_dssp             ---CEEEEBSSTTSC--CEEE-ECCCCCCCTTEEEEEEEEEECCHHHHHHHHCTTSC--CCSSBCCCCCEEEEEEEECTT
T ss_pred             CceEEEEEEcCCCCC--cEEE-EecCCCCCCCeEEEEEEEEeecHHHHHHhcCCCCC--CCCCeecccCceEEEEEECCC
Confidence            356899998765443  7888 89999999999999999999999999999987542  357899999999999999999


Q ss_pred             CCCCCCCCEEEeccccc---------------------cc------CCCCCCCcceeEEEecCCceeeCCCC-CCHHhHh
Q 016265          161 VKEFKEGDEVYGDINEK---------------------AL------EGPKQFGSLAEYTAVEERLLAPKPKN-LDFVQAA  212 (392)
Q Consensus       161 v~~~~vGdrV~~~~~~~---------------------~~------~~~~~~G~~a~~~~v~~~~~~~iP~~-l~~~~aa  212 (392)
                      |++|++||||++.....                     ..      .|....|+|+||++++++.++++|++ +++++||
T Consensus        95 V~~~~vGDrV~~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~~~~~~g~~~~G~~aeyv~v~~~~~~~~P~~~ls~~~aa  174 (369)
T 1uuf_A           95 VEKYAPGDLVGVGCIVDSCKHCEECEDGLENYCDHMTGTYNSPTPDEPGHTLGGYSQQIVVHERYVLRIRHPQEQLAAVA  174 (369)
T ss_dssp             CCSCCTTCEEEECSEEECCSSSHHHHTTCGGGCTTCEETTTSBCSSTTSBCCCSSBSEEEEEGGGCEECCSCGGGHHHHG
T ss_pred             CCCCCCCCEEEEccCCCCCCCCcccCCCCcccCcchhcccccccccCCCCCCCcccceEEEcchhEEECCCCCCCHHHhh
Confidence            99999999998632100                     00      02234699999999999999999999 9999999


Q ss_pred             ccchhHHHHHHHHHhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCCcc-c
Q 016265          213 GLPLAIETAYEGLERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNF-E  291 (392)
Q Consensus       213 ~l~~~~~ta~~al~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~-~  291 (392)
                      .+++++.|||++++++++++|++|||+| +|++|++++|+||. .|++|++++.+++|+++++++|+++++|+.+.++ .
T Consensus       175 ~l~~~~~tA~~al~~~~~~~g~~VlV~G-aG~vG~~aiqlak~-~Ga~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~  252 (369)
T 1uuf_A          175 PLLCAGITTYSPLRHWQAGPGKKVGVVG-IGGLGHMGIKLAHA-MGAHVVAFTTSEAKREAAKALGADEVVNSRNADEMA  252 (369)
T ss_dssp             GGGTHHHHHHHHHHHTTCCTTCEEEEEC-CSHHHHHHHHHHHH-TTCEEEEEESSGGGHHHHHHHTCSEEEETTCHHHHH
T ss_pred             hhhhhHHHHHHHHHhcCCCCCCEEEEEC-CCHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHcCCcEEeccccHHHHH
Confidence            9999999999999888999999999998 59999999999998 4999888999999999999999999999877653 3


Q ss_pred             cCCCCccEEEecCc---cHHHHHHhcccCCeEEEEcCCCCCC-c----------eEEEE--eecHHHHHHHHHHHHCCCc
Q 016265          292 DLPEKFDVVYDAIG---QCDRAVKAIKEGGTVVALTGAVTPP-G----------FRFVV--TSNGEVLKKLNPYLESGKV  355 (392)
Q Consensus       292 ~~~~~~D~vid~~G---~~~~~~~~l~~~G~iv~~g~~~~~~-~----------~~~~~--~~~~~~~~~~~~~l~~g~l  355 (392)
                      +..+++|+|||++|   .++.++++++++|+++.+|....+. .          +.+..  ....+.++++++++++|++
T Consensus       253 ~~~~g~Dvvid~~g~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~l~~~g~i  332 (369)
T 1uuf_A          253 AHLKSFDFILNTVAAPHNLDDFTTLLKRDGTMTLVGAPATPHKSPEVFNLIMKRRAIAGSMIGGIPETQEMLDFCAEHGI  332 (369)
T ss_dssp             TTTTCEEEEEECCSSCCCHHHHHTTEEEEEEEEECCCC-------CHHHHHTTTCEEEECCSCCHHHHHHHHHHHHHHTC
T ss_pred             HhhcCCCEEEECCCCHHHHHHHHHHhccCCEEEEeccCCCCccccCHHHHHhCCcEEEEeecCCHHHHHHHHHHHHhCCC
Confidence            34468999999998   3689999999999999998654211 1          11211  1235778999999999999


Q ss_pred             ccccCCCcccchhhHHHHHHHHHhCCCCeeEEEEeC
Q 016265          356 KPIIDPKGPFPFSQVVEAFSYIETNKATGKVVIHPI  391 (392)
Q Consensus       356 ~~~~~~t~~~~l~~~~~A~~~l~~~~~~gKvvl~~~  391 (392)
                      ++.+   +.|+|+|+++||+.+++++..||+|++++
T Consensus       333 ~~~i---~~~~l~~~~~A~~~~~~~~~~gKvvi~~~  365 (369)
T 1uuf_A          333 VADI---EMIRADQINEAYERMLRGDVKYRFVIDNR  365 (369)
T ss_dssp             CCCE---EEECGGGHHHHHHHHHTTCSSSEEEEEGG
T ss_pred             Ccce---EEEcHHHHHHHHHHHHcCCCceEEEEecC
Confidence            8752   57999999999999999888899999864

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=4e-48  Score=371.01  Aligned_cols=294  Identities=24%  Similarity=0.352  Sum_probs=252.2

Q ss_pred             ceeEEEEcccCCcceEEEeccccCCCCCCCeEEEEEeEEecChHhHHhhcCCCCCCCCCCCCcCCCceeEEEEEeCCCCC
Q 016265           83 EMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVK  162 (392)
Q Consensus        83 ~mka~v~~~~~~~~~l~~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~~~p~v~G~e~~G~V~~vG~~v~  162 (392)
                      +|||+++++++.++.++++ +.+.|+|++|||+|||.++|||++|++.+.|.++  ...+|.++|||++|+|+++|++|+
T Consensus         1 ~Mka~~~~~~g~~~~l~~~-~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~--~~~~p~v~G~E~~G~V~~vG~~v~   77 (327)
T 1qor_A            1 MATRIEFHKHGGPEVLQAV-EFTPADPAENEIQVENKAIGINFIDTYIRSGLYP--PPSLPSGLGTEAAGIVSKVGSGVK   77 (327)
T ss_dssp             -CEEEEBSSCCSGGGCEEE-ECCCCCCCTTEEEEEEEEEECCHHHHHHHHTSSC--CSSSSBCCCSCEEEEEEEECTTCC
T ss_pred             CcEEEEEcCCCChhheEEe-ccCCCCCCCCEEEEEEEEEecCHHHHHHhCCCCC--CCCCCCCCCceeEEEEEEECCCCC
Confidence            3899999998877778888 8999999999999999999999999999998763  235789999999999999999999


Q ss_pred             CCCCCCEEEecccccccCCCCCCCcceeEEEecCCceeeCCCCCCHHhHhccchhHHHHHHHHH-hcCCCCCCeEEEEcC
Q 016265          163 EFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLE-RTGFSAGKSILVLNG  241 (392)
Q Consensus       163 ~~~vGdrV~~~~~~~~~~~~~~~G~~a~~~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~al~-~~~~~~g~~VlI~Ga  241 (392)
                      +|++|||| +...       ..+|+|+||++++++.++++|+++++++||++++++.|||+++. .+++++|++|||+||
T Consensus        78 ~~~~GdrV-~~~g-------~~~G~~aey~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~Ga  149 (327)
T 1qor_A           78 HIKAGDRV-VYAQ-------SALGAYSSVHNIIADKAAILPAAISFEQAAASFLKGLTVYYLLRKTYEIKPDEQFLFHAA  149 (327)
T ss_dssp             SCCTTCEE-EESC-------CSSCCSBSEEEEEGGGEEECCTTSCHHHHHHHHHHHHHHHHHHHTTSCCCTTCEEEESST
T ss_pred             CCCCCCEE-EECC-------CCCceeeeEEEecHHHcEECCCCCCHHHHHHhhhHHHHHHHHHHHhhCCCCCCEEEEECC
Confidence            99999999 4321       12599999999999999999999999999999999999999997 789999999999999


Q ss_pred             CCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCCccccC------CCCccEEEecCc--cHHHHHHh
Q 016265          242 SGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFEDL------PEKFDVVYDAIG--QCDRAVKA  313 (392)
Q Consensus       242 ~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~~~------~~~~D~vid~~G--~~~~~~~~  313 (392)
                      +|++|++++|+++.. |++|+++++++++++.++++|+++++|+.+.++.+.      .+++|++|||+|  .++.++++
T Consensus       150 ~ggiG~~~~~~a~~~-G~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~~g~~~~~~~~~~  228 (327)
T 1qor_A          150 AGGVGLIACQWAKAL-GAKLIGTVGTAQKAQSALKAGAWQVINYREEDLVERLKEITGGKKVRVVYDSVGRDTWERSLDC  228 (327)
T ss_dssp             TBHHHHHHHHHHHHH-TCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTCCEEEEEECSCGGGHHHHHHT
T ss_pred             CCHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHcCCCEEEECCCccHHHHHHHHhCCCCceEEEECCchHHHHHHHHH
Confidence            999999999999985 999999999999999999999999999877654321      347999999998  46899999


Q ss_pred             cccCCeEEEEcCCCCC-C-----------ceEEEEee----------cHHHHHHHHHHHHCCCcccccCCC--cccchhh
Q 016265          314 IKEGGTVVALTGAVTP-P-----------GFRFVVTS----------NGEVLKKLNPYLESGKVKPIIDPK--GPFPFSQ  369 (392)
Q Consensus       314 l~~~G~iv~~g~~~~~-~-----------~~~~~~~~----------~~~~~~~~~~~l~~g~l~~~~~~t--~~~~l~~  369 (392)
                      ++++|+++.+|..... .           .+......          ..+.++++++++++|++++.  ++  ++|+|+|
T Consensus       229 l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~--i~~~~~~~l~~  306 (327)
T 1qor_A          229 LQRRGLMVSFGNSSGAVTGVNLGILNQKGSLYVTRPSLQGYITTREELTEASNELFSLIASGVIKVD--VAEQQKYPLKD  306 (327)
T ss_dssp             EEEEEEEEECCCTTCCCCCBCTHHHHHTTSCEEECCCHHHHCCSHHHHHHHHHHHHHHHHTTSSCCC--CCGGGEEEGGG
T ss_pred             hcCCCEEEEEecCCCCCCccCHHHHhhccceEEEccchhhhcCCHHHHHHHHHHHHHHHHCCCcccc--cccCcEEcHHH
Confidence            9999999999864321 1           11111000          23457899999999999874  56  8999999


Q ss_pred             HHHHHHHHHhCCCCeeEEEEe
Q 016265          370 VVEAFSYIETNKATGKVVIHP  390 (392)
Q Consensus       370 ~~~A~~~l~~~~~~gKvvl~~  390 (392)
                      +++||+.+++++..||+|+++
T Consensus       307 ~~~A~~~~~~~~~~gKvvl~~  327 (327)
T 1qor_A          307 AQRAHEILESRATQGSSLLIP  327 (327)
T ss_dssp             HHHHHHHHHTTCCCBCCEEEC
T ss_pred             HHHHHHHHHhCCCCceEEEeC
Confidence            999999999988889999874

>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A

Probab=100.00  E-value=2.1e-48  Score=389.25  Aligned_cols=311  Identities=26%  Similarity=0.387  Sum_probs=254.9

Q ss_pred             CCCCCcceeEEEEcccC-------------CcceEEEeccccCCCCCCCeEEEEEeEEecChHhHHhhcCCCC-------
Q 016265           77 VGTVPSEMKAWLYGEYG-------------GVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFK-------  136 (392)
Q Consensus        77 ~~~~p~~mka~v~~~~~-------------~~~~l~~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~g~~~-------  136 (392)
                      .+.+|.+|||+++.+++             ....++++ +++.|+|++|||||||.++|||++|++...+...       
T Consensus        24 ~~~iP~tmkA~v~~~~~~~~~~~~~~~~~~~~~~l~~~-e~p~P~~~~~eVlVkV~a~gic~sD~~~~~~~~~~~~~~~~  102 (456)
T 3krt_A           24 ALPLPESYRAITVHKDETEMFAGLETRDKDPRKSIHLD-DVPVPELGPGEALVAVMASSVNYNSVHTSIFEPLSTFGFLE  102 (456)
T ss_dssp             HSCCCSCEEEEEEEGGGTTTTTTCCGGGCCHHHHCEEE-EECCCCCCTTEEEEEEEEEEECHHHHHHHTTCSSCSHHHHH
T ss_pred             cCCCCcceEEEEEeccccccccccccccCCCCCCcEEE-EccCCCCCCCeEEEEEEEEEecchhhhhhhcCcccchhhhh
Confidence            34689999999999862             12457888 8999999999999999999999999876543210       


Q ss_pred             ------C--CCCCCC-CcCCCceeEEEEEeCCCCCCCCCCCEEEecccccc-----------------cCCCC-CCCcce
Q 016265          137 ------A--TDSPLP-TVPGYDVAGVVVKVGTQVKEFKEGDEVYGDINEKA-----------------LEGPK-QFGSLA  189 (392)
Q Consensus       137 ------~--~~~~~p-~v~G~e~~G~V~~vG~~v~~~~vGdrV~~~~~~~~-----------------~~~~~-~~G~~a  189 (392)
                            .  ....+| .++|||++|+|+++|++|++|++||||++.+..+.                 ..|.. .+|+|+
T Consensus       103 ~~g~~~~~~~~~~~P~~v~GhE~~G~Vv~vG~~v~~~~vGdrV~~~~~~c~~~~~~~~~~~~~c~~~~~~G~~~~~G~~a  182 (456)
T 3krt_A          103 RYGRVSDLAKRHDLPYHVIGSDLAGVVLRTGPGVNAWQAGDEVVAHCLSVELESSDGHNDTMLDPEQRIWGFETNFGGLA  182 (456)
T ss_dssp             HHHTSCHHHHTTCCSEEECCSCCEEEEEEECTTCCSCCTTCEEEECCEECCCCSGGGTTSGGGCTTCEETTTTSSSCSSB
T ss_pred             hccccccccccCCCCcccccceeEEEEEEECCCCCCCCCCCEEEEeCCcccccccccccccccCccccccccCCCCCccc
Confidence                  0  012466 68999999999999999999999999998542111                 11222 259999


Q ss_pred             eEEEecCCceeeCCCCCCHHhHhccchhHHHHHHHHHh---cCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeC
Q 016265          190 EYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLER---TGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATS  266 (392)
Q Consensus       190 ~~~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~al~~---~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~  266 (392)
                      ||+++++++++++|+++++++||++++++.|||+++..   +++++|++|||+|++|++|++++|+||. .|+++|++++
T Consensus       183 ey~~v~~~~~~~~P~~l~~~~aa~l~~~~~ta~~al~~~~~~~~~~g~~VlV~GasG~vG~~avqlak~-~Ga~vi~~~~  261 (456)
T 3krt_A          183 EIALVKSNQLMPKPDHLSWEEAAAPGLVNSTAYRQLVSRNGAGMKQGDNVLIWGASGGLGSYATQFALA-GGANPICVVS  261 (456)
T ss_dssp             SEEEEEGGGEEECCTTSCHHHHHSSHHHHHHHHHHHTSTTTTCCCTTCEEEETTTTSHHHHHHHHHHHH-TTCEEEEEES
T ss_pred             ceEEechHHeeECCCCCCHHHHHHhhhHHHHHHHHHHhhcccCCCCCCEEEEECCCCHHHHHHHHHHHH-cCCeEEEEEC
Confidence            99999999999999999999999999999999999953   7899999999999889999999999998 5999999999


Q ss_pred             CcccHHHHHhcCCcEEEeCCCCccc------------------c-----CCCCccEEEecCc--cHHHHHHhcccCCeEE
Q 016265          267 STRNLEFLKSLGADLAIDYTKDNFE------------------D-----LPEKFDVVYDAIG--QCDRAVKAIKEGGTVV  321 (392)
Q Consensus       267 ~~~~~~~~~~~G~~~vi~~~~~~~~------------------~-----~~~~~D~vid~~G--~~~~~~~~l~~~G~iv  321 (392)
                      +++|+++++++|+++++|+.+.++.                  .     .++++|+||||+|  .++.++++++++|+++
T Consensus       262 ~~~~~~~~~~lGa~~vi~~~~~d~~~~~~~~~~~~~~~~~~~~~i~~~t~g~g~Dvvid~~G~~~~~~~~~~l~~~G~iv  341 (456)
T 3krt_A          262 SPQKAEICRAMGAEAIIDRNAEGYRFWKDENTQDPKEWKRFGKRIRELTGGEDIDIVFEHPGRETFGASVFVTRKGGTIT  341 (456)
T ss_dssp             SHHHHHHHHHHTCCEEEETTTTTCCSEEETTEECHHHHHHHHHHHHHHHTSCCEEEEEECSCHHHHHHHHHHEEEEEEEE
T ss_pred             CHHHHHHHHhhCCcEEEecCcCcccccccccccchHHHHHHHHHHHHHhCCCCCcEEEEcCCchhHHHHHHHhhCCcEEE
Confidence            9999999999999999998775431                  1     1358999999999  4689999999999999


Q ss_pred             EEcCCCCC-Cce----------EEEE--eecHHHHHHHHHHHHCCCcccccCCCcccchhhHHHHHHHHHhCCCCeeEEE
Q 016265          322 ALTGAVTP-PGF----------RFVV--TSNGEVLKKLNPYLESGKVKPIIDPKGPFPFSQVVEAFSYIETNKATGKVVI  388 (392)
Q Consensus       322 ~~g~~~~~-~~~----------~~~~--~~~~~~~~~~~~~l~~g~l~~~~~~t~~~~l~~~~~A~~~l~~~~~~gKvvl  388 (392)
                      .+|..... ..+          .+..  ......+.++++++++|++++.  ++++|+|+|+++||+.+.+++..||+||
T Consensus       342 ~~G~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~l~~~g~l~~~--i~~~~~l~~~~eA~~~l~~~~~~GKvvv  419 (456)
T 3krt_A          342 TCASTSGYMHEYDNRYLWMSLKRIIGSHFANYREAWEANRLIAKGRIHPT--LSKVYSLEDTGQAAYDVHRNLHQGKVGV  419 (456)
T ss_dssp             ESCCTTCSEEEEEHHHHHHTTCEEEECCSCCHHHHHHHHHHHHTTSSCCC--EEEEEEGGGHHHHHHHHHTTCSSSEEEE
T ss_pred             EEecCCCcccccCHHHHHhcCeEEEEeccCCHHHHHHHHHHHHcCCcccc--eeEEEcHHHHHHHHHHHHhCCCCCcEEE
Confidence            99865421 111          1111  1234567789999999999865  4689999999999999999999999998


Q ss_pred             EeC
Q 016265          389 HPI  391 (392)
Q Consensus       389 ~~~  391 (392)
                      .+.
T Consensus       420 ~~~  422 (456)
T 3krt_A          420 LCL  422 (456)
T ss_dssp             ESS
T ss_pred             EeC
Confidence            764

>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A

Probab=100.00  E-value=1.2e-48  Score=390.13  Aligned_cols=309  Identities=31%  Similarity=0.438  Sum_probs=252.8

Q ss_pred             CCCCcceeEEEEcccC-----------CcceEEEeccccCCCCCCCeEEEEEeEEecChHhHHhhc--------------
Q 016265           78 GTVPSEMKAWLYGEYG-----------GVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQ--------------  132 (392)
Q Consensus        78 ~~~p~~mka~v~~~~~-----------~~~~l~~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~--------------  132 (392)
                      ..+|.+|||+++++++           ..+.++++ +++.|+|++|||+|||.++|||++|++...              
T Consensus        19 ~~~p~tmkA~v~~~~~~~~~~~~~~~~~~~~l~~~-e~p~P~~~~~eVlVrV~a~gic~sD~~~~~~~~~~~~~~~~~~~   97 (447)
T 4a0s_A           19 APVPDTYLALHLRAEDADMFKGVADKDVRKSLRLG-EVPMPELAPDEVLVAVMASSINYNTVWSAMFEPIPTFHFLKQNA   97 (447)
T ss_dssp             SCCCSEEEEEEEEGGGTTTTTTCSSCCHHHHCEEE-EEECCCCCTTEEEEEEEEEECCHHHHHHHTTCSSCHHHHHHHHH
T ss_pred             cCCChhheeeeeeccccccccccccCCCCCCceEE-eccCCCCCCCeEEEEEEEEEECcHHhhhhccCcccchhhhhhhc
Confidence            4589999999999987           11347888 899999999999999999999999986432              


Q ss_pred             --CCCCCCCCCCC-CcCCCceeEEEEEeCCCCCCCCCCCEEEecccccc-----------------cCCCC-CCCcceeE
Q 016265          133 --GKFKATDSPLP-TVPGYDVAGVVVKVGTQVKEFKEGDEVYGDINEKA-----------------LEGPK-QFGSLAEY  191 (392)
Q Consensus       133 --g~~~~~~~~~p-~v~G~e~~G~V~~vG~~v~~~~vGdrV~~~~~~~~-----------------~~~~~-~~G~~a~~  191 (392)
                        |.++ ....+| .++|||++|+|+++|++|++|++||||++.+..++                 ..|.. .+|+|+||
T Consensus        98 ~~g~~~-~~~~~P~~v~GhE~~G~V~~vG~~V~~~~vGDrV~~~~~~~~~~~~~~~~~~~~c~~~~~~G~~~~~G~~aey  176 (447)
T 4a0s_A           98 RQGGWA-TRHDQPYHVLGSDCSGVVVRTGIGVRRWKPGDHVIVHPAHVDEQEPATHGDGMLGTEQRAWGFETNFGGLAEY  176 (447)
T ss_dssp             TTCGGG-GGGCCSEEECCSCEEEEEEEECTTCCSCCTTCEEEECSEECCTTSGGGGTCTTCSTTCEETTTTSSSCSSBSE
T ss_pred             ccCccc-cccCCCCcccccceeEEEEEECCCCCCCCCCCEEEEecCcCcCcccccccccccccccccccccCCCCceeee
Confidence              2221 112456 69999999999999999999999999997542110                 11221 25999999


Q ss_pred             EEecCCceeeCCCCCCHHhHhccchhHHHHHHHHH---hcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCc
Q 016265          192 TAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLE---RTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSST  268 (392)
Q Consensus       192 ~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~al~---~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~  268 (392)
                      +++++++++++|+++++++||++++++.|||+++.   .+++++|++|||+|++|++|++++|+|+. .|++++++++++
T Consensus       177 ~~v~~~~~~~iP~~ls~~~aA~l~~~~~tA~~al~~~~~~~~~~g~~VlV~GasG~iG~~a~qla~~-~Ga~vi~~~~~~  255 (447)
T 4a0s_A          177 GVVRASQLLPKPAHLTWEEAAVSPLCAGTAYRMLVSDRGAQMKQGDIVLIWGASGGLGSYAIQFVKN-GGGIPVAVVSSA  255 (447)
T ss_dssp             EEEEGGGEEECCTTSCHHHHHTSHHHHHHHHHHHTSTTTTCCCTTCEEEETTTTSHHHHHHHHHHHH-TTCEEEEEESSH
T ss_pred             eecCHHHcEECCCCCCHHHHHHhHHHHHHHHHHHHhhhccCCCCCCEEEEECCCCHHHHHHHHHHHH-cCCEEEEEeCCH
Confidence            99999999999999999999999999999999994   48899999999999889999999999998 599999999999


Q ss_pred             ccHHHHHhcCCcEEEeCCCCcc-------------------cc----CCCCccEEEecCc--cHHHHHHhcccCCeEEEE
Q 016265          269 RNLEFLKSLGADLAIDYTKDNF-------------------ED----LPEKFDVVYDAIG--QCDRAVKAIKEGGTVVAL  323 (392)
Q Consensus       269 ~~~~~~~~~G~~~vi~~~~~~~-------------------~~----~~~~~D~vid~~G--~~~~~~~~l~~~G~iv~~  323 (392)
                      +|+++++++|+++++|+.+.++                   ..    .++++|++|||+|  .++.++++++++|+++.+
T Consensus       256 ~~~~~~~~lGa~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~g~Dvvid~~G~~~~~~~~~~l~~~G~iv~~  335 (447)
T 4a0s_A          256 QKEAAVRALGCDLVINRAELGITDDIADDPRRVVETGRKLAKLVVEKAGREPDIVFEHTGRVTFGLSVIVARRGGTVVTC  335 (447)
T ss_dssp             HHHHHHHHTTCCCEEEHHHHTCCTTGGGCHHHHHHHHHHHHHHHHHHHSSCCSEEEECSCHHHHHHHHHHSCTTCEEEES
T ss_pred             HHHHHHHhcCCCEEEecccccccccccccccccchhhhHHHHHHHHHhCCCceEEEECCCchHHHHHHHHHhcCCEEEEE
Confidence            9999999999999998754332                   11    1458999999999  468899999999999999


Q ss_pred             cCCCCC-Cce----------EEE--EeecHHHHHHHHHHHHCCCcccccCCCcccchhhHHHHHHHHHhCCCCeeEEEEe
Q 016265          324 TGAVTP-PGF----------RFV--VTSNGEVLKKLNPYLESGKVKPIIDPKGPFPFSQVVEAFSYIETNKATGKVVIHP  390 (392)
Q Consensus       324 g~~~~~-~~~----------~~~--~~~~~~~~~~~~~~l~~g~l~~~~~~t~~~~l~~~~~A~~~l~~~~~~gKvvl~~  390 (392)
                      |..... ..+          .+.  .....+.+.++++++++|++++.  ++++|+|+|+++||+.+.+++..||+||.+
T Consensus       336 G~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~l~~~g~l~~~--i~~~~~l~~~~~A~~~~~~~~~~GKvvv~~  413 (447)
T 4a0s_A          336 GSSSGYLHTFDNRYLWMKLKKIVGSHGANHEEQQATNRLFESGAVVPA--MSAVYPLAEAAEACRVVQTSRQVGKVAVLC  413 (447)
T ss_dssp             CCTTCSEEEEEHHHHHHTTCEEEECCSCCHHHHHHHHHHHHTTSSCCC--EEEEEEGGGHHHHHHHHHTTCCSSEEEEES
T ss_pred             ecCCCcccccCHHHHHhCCCEEEecCCCCHHHHHHHHHHHHcCCcccc--eeEEEcHHHHHHHHHHHhcCCCceEEEEEe
Confidence            865421 111          111  12235677899999999999865  468999999999999999999999999876


Q ss_pred             C
Q 016265          391 I  391 (392)
Q Consensus       391 ~  391 (392)
                      .
T Consensus       414 ~  414 (447)
T 4a0s_A          414 M  414 (447)
T ss_dssp             S
T ss_pred             C
Confidence            4

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=100.00  E-value=1.3e-48  Score=378.87  Aligned_cols=302  Identities=21%  Similarity=0.280  Sum_probs=247.0

Q ss_pred             ceeEEEEcccCCcceEEEeccccCCCCCCCeEEEEEeEEecChHhHHhhcCC-CCCCCCCCCCcCCCceeEEEEEeCCCC
Q 016265           83 EMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGK-FKATDSPLPTVPGYDVAGVVVKVGTQV  161 (392)
Q Consensus        83 ~mka~v~~~~~~~~~l~~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~g~-~~~~~~~~p~v~G~e~~G~V~~vG~~v  161 (392)
                      +|||+++++++.   ++++ +.+.|+|++|||+|||.++|||++|++.+.|. +......+|.++|||++|+|+++|++|
T Consensus         7 ~mka~~~~~~~~---l~~~-~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~p~v~G~E~~G~V~~vG~~V   82 (356)
T 1pl8_A            7 NNLSLVVHGPGD---LRLE-NYPIPEPGPNEVLLRMHSVGICGSDVHYWEYGRIGNFIVKKPMVLGHEASGTVEKVGSSV   82 (356)
T ss_dssp             CCEEEEEEETTE---EEEE-ECCCCCCCTTEEEEEEEEEEECHHHHHHHHHSEETTEECSSCEECCCEEEEEEEEECTTC
T ss_pred             CceEEEEecCCc---EEEE-EccCCCCCCCeEEEEEEEeeeCHHHHHHHcCCCCCCccCCCCcccccceEEEEEEECCCC
Confidence            489999988653   8888 89999999999999999999999999988743 211123468999999999999999999


Q ss_pred             CCCCCCCEEEecccccc------------------cCCC-CCCCcceeEEEecCCceeeCCCCCCHHhHhccchhHHHHH
Q 016265          162 KEFKEGDEVYGDINEKA------------------LEGP-KQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAY  222 (392)
Q Consensus       162 ~~~~vGdrV~~~~~~~~------------------~~~~-~~~G~~a~~~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~  222 (392)
                      ++|++||||++.....+                  ..|. ..+|+|+||++++++.++++|+++++++|+.+ .++.|||
T Consensus        83 ~~~~vGdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~g~~~~~G~~aey~~v~~~~~~~iP~~l~~~~aa~~-~~~~ta~  161 (356)
T 1pl8_A           83 KHLKPGDRVAIEPGAPRENDEFCKMGRYNLSPSIFFCATPPDDGNLCRFYKHNAAFCYKLPDNVTFEEGALI-EPLSVGI  161 (356)
T ss_dssp             CSCCTTCEEEECSEECSSCCHHHHTTCGGGCTTCEETTBTTBCCSCBSEEEEEGGGEEECCTTSCHHHHHHH-HHHHHHH
T ss_pred             CCCCCCCEEEEeccCCCCCChHHHCcCcccCCCccccCcCCCCCccccEEEeehHHEEECcCCCCHHHHHhh-chHHHHH
Confidence            99999999987532110                  0111 24699999999999999999999999998865 5778999


Q ss_pred             HHHHhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCC-eEEEEeCCcccHHHHHhcCCcEEEeCCC---Ccccc-C----
Q 016265          223 EGLERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGA-SRVAATSSTRNLEFLKSLGADLAIDYTK---DNFED-L----  293 (392)
Q Consensus       223 ~al~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~-~vv~~~~~~~~~~~~~~~G~~~vi~~~~---~~~~~-~----  293 (392)
                      ++++.+++++|++|||+| +|++|++++|+||. .|+ +|++++.+++|+++++++|+++++|++.   .++.+ +    
T Consensus       162 ~al~~~~~~~g~~VlV~G-aG~vG~~aiqlak~-~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~i~~~~  239 (356)
T 1pl8_A          162 HACRRGGVTLGHKVLVCG-AGPIGMVTLLVAKA-MGAAQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQL  239 (356)
T ss_dssp             HHHHHHTCCTTCEEEEEC-CSHHHHHHHHHHHH-TTCSEEEEEESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHH
T ss_pred             HHHHhcCCCCCCEEEEEC-CCHHHHHHHHHHHH-cCCCEEEEECCCHHHHHHHHHhCCCEEEcCcccccchHHHHHHHHh
Confidence            999989999999999998 69999999999998 599 8888889999999999999999999872   33221 1    


Q ss_pred             CCCccEEEecCcc---HHHHHHhcccCCeEEEEcCCCCCCce----------EEEE-eecHHHHHHHHHHHHCCCccccc
Q 016265          294 PEKFDVVYDAIGQ---CDRAVKAIKEGGTVVALTGAVTPPGF----------RFVV-TSNGEVLKKLNPYLESGKVKPII  359 (392)
Q Consensus       294 ~~~~D~vid~~G~---~~~~~~~l~~~G~iv~~g~~~~~~~~----------~~~~-~~~~~~~~~~~~~l~~g~l~~~~  359 (392)
                      .+++|+|||++|.   ++.++++++++|+++.+|....+..+          .+.. ......++++++++++|+++...
T Consensus       240 ~~g~D~vid~~g~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~l~~~g~i~~~~  319 (356)
T 1pl8_A          240 GCKPEVTIECTGAEASIQAGIYATRSGGTLVLVGLGSEMTTVPLLHAAIREVDIKGVFRYCNTWPVAISMLASKSVNVKP  319 (356)
T ss_dssp             TSCCSEEEECSCCHHHHHHHHHHSCTTCEEEECSCCCSCCCCCHHHHHHTTCEEEECCSCSSCHHHHHHHHHTTSCCCGG
T ss_pred             CCCCCEEEECCCChHHHHHHHHHhcCCCEEEEEecCCCCCccCHHHHHhcceEEEEecccHHHHHHHHHHHHcCCCChHH
Confidence            2589999999983   58899999999999999864322111          1111 11134688999999999987655


Q ss_pred             CCCcccchhhHHHHHHHHHhCCCCeeEEEEeCC
Q 016265          360 DPKGPFPFSQVVEAFSYIETNKATGKVVIHPIP  392 (392)
Q Consensus       360 ~~t~~~~l~~~~~A~~~l~~~~~~gKvvl~~~p  392 (392)
                      .++++|+|+|+++||+.++++ ..||+|++++|
T Consensus       320 ~i~~~~~l~~~~~A~~~~~~~-~~gKvvi~~~~  351 (356)
T 1pl8_A          320 LVTHRFPLEKALEAFETFKKG-LGLKIMLKCDP  351 (356)
T ss_dssp             GEEEEEEGGGHHHHHHHHHTT-CCSEEEEECCT
T ss_pred             heEEEecHHHHHHHHHHHhCC-CceEEEEeCCC
Confidence            567899999999999999988 77999999864

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=100.00  E-value=1e-48  Score=380.51  Aligned_cols=304  Identities=19%  Similarity=0.209  Sum_probs=248.0

Q ss_pred             CCCcceeEEEEcccCCcceEEEeccccCC--------CCCCCeEEEEEeEEecChHhHHhhcCC-CCCCCCCCCCcCCCc
Q 016265           79 TVPSEMKAWLYGEYGGVDVLKFDEKVTVP--------QVKEDQVLIKVVAAALNPVDGKRRQGK-FKATDSPLPTVPGYD  149 (392)
Q Consensus        79 ~~p~~mka~v~~~~~~~~~l~~~~~~~~p--------~~~~~eVlV~v~~~~i~~~D~~~~~g~-~~~~~~~~p~v~G~e  149 (392)
                      ++|.+|||+++++++.   ++++ ++|.|        +|++|||||||.++|||++|++.+.+. +......+|.++|||
T Consensus         4 ~~~~~mka~~~~~~~~---l~~~-~~~~P~~~~~~~~~~~~~eVlVkv~a~gi~~~D~~~~~~~~~~~~~~~~p~v~G~E   79 (363)
T 3m6i_A            4 SASKTNIGVFTNPQHD---LWIS-EASPSLESVQKGEELKEGEVTVAVRSTGICGSDVHFWKHGCIGPMIVECDHVLGHE   79 (363)
T ss_dssp             -CCSCCEEEEECTTCC---EEEE-ECSSCHHHHHHTCSCCTTEEEEEEEEEECCHHHHHHHHHSBSSSCBCCSCEECCCE
T ss_pred             CCcccceeEEEeCCCc---EEEE-EecCCccccccCCCcCCCeEEEEEeEEeecHhhHHHHcCCCCCCccCCCCcccCcc
Confidence            4678899999997665   8888 89999        999999999999999999999988743 222234678999999


Q ss_pred             eeEEEEEeCCCCCCCCCCCEEEecccccc------------------cCC-CCCCCcceeEEEecCCceeeCCCCCCHHh
Q 016265          150 VAGVVVKVGTQVKEFKEGDEVYGDINEKA------------------LEG-PKQFGSLAEYTAVEERLLAPKPKNLDFVQ  210 (392)
Q Consensus       150 ~~G~V~~vG~~v~~~~vGdrV~~~~~~~~------------------~~~-~~~~G~~a~~~~v~~~~~~~iP~~l~~~~  210 (392)
                      ++|+|+++|++|++|++||||++.....+                  ..+ ...+|+|+||++++++.++++|+ +++++
T Consensus        80 ~~G~V~~vG~~v~~~~vGdrV~~~~~~~cg~C~~c~~g~~~~c~~~~~~g~~~~~G~~aey~~v~~~~~~~iP~-~s~~~  158 (363)
T 3m6i_A           80 SAGEVIAVHPSVKSIKVGDRVAIEPQVICNACEPCLTGRYNGCERVDFLSTPPVPGLLRRYVNHPAVWCHKIGN-MSYEN  158 (363)
T ss_dssp             EEEEEEEECTTCCSCCTTCEEEECCEECCSCSHHHHTTCGGGCTTCEETTSTTSCCSCBSEEEEEGGGEEECTT-CCHHH
T ss_pred             eEEEEEEECCCCCCCCCCCEEEEecccCCCCCHHHHCcCcccCCCccccCCCCCCccceeEEEEehhhEEECCC-CCHHH
Confidence            99999999999999999999987532100                  111 12579999999999999999999 99999


Q ss_pred             HhccchhHHHHHHHHHhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCe-EEEEeCCcccHHHHHhcCCcEEEeCCC--
Q 016265          211 AAGLPLAIETAYEGLERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGAS-RVAATSSTRNLEFLKSLGADLAIDYTK--  287 (392)
Q Consensus       211 aa~l~~~~~ta~~al~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~-vv~~~~~~~~~~~~~~~G~~~vi~~~~--  287 (392)
                      ||.+ .++.|||++++++++++|++|||+|+ |++|++++|+||. .|++ |++++.+++|+++++++ +++++++..  
T Consensus       159 aa~~-~~~~ta~~~l~~~~~~~g~~VlV~Ga-G~vG~~aiqlak~-~Ga~~Vi~~~~~~~~~~~a~~l-~~~~~~~~~~~  234 (363)
T 3m6i_A          159 GAML-EPLSVALAGLQRAGVRLGDPVLICGA-GPIGLITMLCAKA-AGACPLVITDIDEGRLKFAKEI-CPEVVTHKVER  234 (363)
T ss_dssp             HHHH-HHHHHHHHHHHHHTCCTTCCEEEECC-SHHHHHHHHHHHH-TTCCSEEEEESCHHHHHHHHHH-CTTCEEEECCS
T ss_pred             HHhh-hHHHHHHHHHHHcCCCCCCEEEEECC-CHHHHHHHHHHHH-cCCCEEEEECCCHHHHHHHHHh-chhcccccccc
Confidence            9977 57789999999999999999999985 9999999999998 4997 88888999999999999 777766531  


Q ss_pred             ---Ccccc----C--CCCccEEEecCcc---HHHHHHhcccCCeEEEEcCCCCCCceE----------EEE-eecHHHHH
Q 016265          288 ---DNFED----L--PEKFDVVYDAIGQ---CDRAVKAIKEGGTVVALTGAVTPPGFR----------FVV-TSNGEVLK  344 (392)
Q Consensus       288 ---~~~~~----~--~~~~D~vid~~G~---~~~~~~~l~~~G~iv~~g~~~~~~~~~----------~~~-~~~~~~~~  344 (392)
                         +++.+    .  ++++|+||||+|.   ++.++++++++|+++.+|.......+.          +.. ....+.++
T Consensus       235 ~~~~~~~~~v~~~t~g~g~Dvvid~~g~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~  314 (363)
T 3m6i_A          235 LSAEESAKKIVESFGGIEPAVALECTGVESSIAAAIWAVKFGGKVFVIGVGKNEIQIPFMRASVREVDLQFQYRYCNTWP  314 (363)
T ss_dssp             CCHHHHHHHHHHHTSSCCCSEEEECSCCHHHHHHHHHHSCTTCEEEECCCCCSCCCCCHHHHHHHTCEEEECCSCSSCHH
T ss_pred             cchHHHHHHHHHHhCCCCCCEEEECCCChHHHHHHHHHhcCCCEEEEEccCCCCccccHHHHHhcCcEEEEccCCHHHHH
Confidence               22222    1  4589999999984   589999999999999998654322211          111 11256789


Q ss_pred             HHHHHHHCCCcccccCCCcccchhhHHHHHHHHHhC-CCCeeEEEEeC
Q 016265          345 KLNPYLESGKVKPIIDPKGPFPFSQVVEAFSYIETN-KATGKVVIHPI  391 (392)
Q Consensus       345 ~~~~~l~~g~l~~~~~~t~~~~l~~~~~A~~~l~~~-~~~gKvvl~~~  391 (392)
                      ++++++++|+++....++++|+|+|+++||+.++++ ...+|+||+.+
T Consensus       315 ~~~~l~~~g~i~~~~~i~~~~~l~~~~~A~~~~~~~~~~~~Kvvi~~~  362 (363)
T 3m6i_A          315 RAIRLVENGLVDLTRLVTHRFPLEDALKAFETASDPKTGAIKVQIQSL  362 (363)
T ss_dssp             HHHHHHHTTSSCCGGGEEEEEEGGGHHHHHHHHHCGGGCCSEEEEECC
T ss_pred             HHHHHHHhCCCChHHceeeeeeHHHHHHHHHHHhccCCCeEEEEEecC
Confidence            999999999997665667899999999999999998 56689999864

>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A

Probab=100.00  E-value=1.7e-48  Score=379.09  Aligned_cols=299  Identities=20%  Similarity=0.271  Sum_probs=246.8

Q ss_pred             CcceeEEEEcccCCc-ceEEEeccccCCCCC--CCeEEEEEeEEecChHhHHhhcCCCCCCCCCCC---------CcCCC
Q 016265           81 PSEMKAWLYGEYGGV-DVLKFDEKVTVPQVK--EDQVLIKVVAAALNPVDGKRRQGKFKATDSPLP---------TVPGY  148 (392)
Q Consensus        81 p~~mka~v~~~~~~~-~~l~~~~~~~~p~~~--~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~~~p---------~v~G~  148 (392)
                      +.+|||+++++++.+ +.++++ +.+.|+|+  +|||+|||.++|||++|++.+.|.++. ...+|         .++||
T Consensus         1 ~~~mka~~~~~~g~~~~~l~~~-~~~~P~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~-~~~~P~~~~~~~p~~i~G~   78 (364)
T 1gu7_A            1 MITAQAVLYTQHGEPKDVLFTQ-SFEIDDDNLAPNEVIVKTLGSPVNPSDINQIQGVYPS-KPAKTTGFGTTEPAAPCGN   78 (364)
T ss_dssp             CEEEEEEEESSCSCHHHHCEEE-EEEECTTSCCTTEEEEEEEEEEECHHHHHHHHTCSSC-CCCCBSTTCCSSCBEECCS
T ss_pred             CceEEEEEeccCCCchheeEEe-eccCCCCCCCCCeEEEEEEeccCCHHHHHHhcCCCCC-CCCCCccccccCcccccCc
Confidence            357999999998865 457777 78888877  999999999999999999999997642 23456         89999


Q ss_pred             ceeEEEEEeCCCCCCCCCCCEEEecccccccCCCCCCCcceeEEEecCCceeeCCC-----------CCCHHhHhccchh
Q 016265          149 DVAGVVVKVGTQVKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPK-----------NLDFVQAAGLPLA  217 (392)
Q Consensus       149 e~~G~V~~vG~~v~~~~vGdrV~~~~~~~~~~~~~~~G~~a~~~~v~~~~~~~iP~-----------~l~~~~aa~l~~~  217 (392)
                      |++|+|+++|++|++|++||||++...        .+|+|+||++++++.++++|+           ++++++||+++++
T Consensus        79 E~~G~V~~vG~~v~~~~vGdrV~~~~~--------~~G~~aey~~v~~~~~~~~P~~~~~~~~~~~~~~~~~~aa~l~~~  150 (364)
T 1gu7_A           79 EGLFEVIKVGSNVSSLEAGDWVIPSHV--------NFGTWRTHALGNDDDFIKLPNPAQSKANGKPNGLTINQGATISVN  150 (364)
T ss_dssp             CCEEEEEEECTTCCSCCTTCEEEESSS--------CCCCSBSEEEEEGGGEEEECCHHHHHHTTCSCCCCHHHHHTCTTH
T ss_pred             eeEEEEEEeCCCCCcCCCCCEEEecCC--------CCCcchheEecCHHHeEEcCCccccccccccCCCCHHHHhhcccc
Confidence            999999999999999999999998642        359999999999999999998           8999999999999


Q ss_pred             HHHHHHHHHh-cCCCCC-CeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCccc----HHHHHhcCCcEEEeCCC---C
Q 016265          218 IETAYEGLER-TGFSAG-KSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRN----LEFLKSLGADLAIDYTK---D  288 (392)
Q Consensus       218 ~~ta~~al~~-~~~~~g-~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~----~~~~~~~G~~~vi~~~~---~  288 (392)
                      +.|||+++.+ +++++| ++|||+|++|++|++++|+||.+ |+++|+++++.++    +++++++|+++++|+++   .
T Consensus       151 ~~ta~~~l~~~~~~~~g~~~VlV~Ga~G~vG~~aiqlak~~-Ga~vi~~~~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~  229 (364)
T 1gu7_A          151 PLTAYLMLTHYVKLTPGKDWFIQNGGTSAVGKYASQIGKLL-NFNSISVIRDRPNLDEVVASLKELGATQVITEDQNNSR  229 (364)
T ss_dssp             HHHHHHHHHSSSCCCTTTCEEEESCTTSHHHHHHHHHHHHH-TCEEEEEECCCTTHHHHHHHHHHHTCSEEEEHHHHHCG
T ss_pred             HHHHHHHHHHhhccCCCCcEEEECCCCcHHHHHHHHHHHHC-CCEEEEEecCccccHHHHHHHHhcCCeEEEecCccchH
Confidence            9999999987 589999 99999998899999999999985 9999988876654    67889999999999864   3


Q ss_pred             cccc--------CCCCccEEEecCcc--HHHHHHhcccCCeEEEEcCCCC-CC----------ceEEEEeec--------
Q 016265          289 NFED--------LPEKFDVVYDAIGQ--CDRAVKAIKEGGTVVALTGAVT-PP----------GFRFVVTSN--------  339 (392)
Q Consensus       289 ~~~~--------~~~~~D~vid~~G~--~~~~~~~l~~~G~iv~~g~~~~-~~----------~~~~~~~~~--------  339 (392)
                      ++.+        ..+++|+||||+|.  ...++++++++|+++.+|.... +.          .+.+.....        
T Consensus       230 ~~~~~i~~~t~~~~~g~Dvvid~~G~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  309 (364)
T 1gu7_A          230 EFGPTIKEWIKQSGGEAKLALNCVGGKSSTGIARKLNNNGLMLTYGGMSFQPVTIPTSLYIFKNFTSAGFWVTELLKNNK  309 (364)
T ss_dssp             GGHHHHHHHHHHHTCCEEEEEESSCHHHHHHHHHTSCTTCEEEECCCCSSCCEEECHHHHHHSCCEEEECCHHHHHTTCH
T ss_pred             HHHHHHHHHhhccCCCceEEEECCCchhHHHHHHHhccCCEEEEecCCCCCCcccCHHHHhhcCcEEEEEchhHhcccCH
Confidence            3322        13589999999993  4588999999999999986431 11          111211111        


Q ss_pred             ---HHHHHHHHHHHHCCCcccccCCCccc-chhhHHHHHHHHHhCCCCeeEEEEe
Q 016265          340 ---GEVLKKLNPYLESGKVKPIIDPKGPF-PFSQVVEAFSYIETNKATGKVVIHP  390 (392)
Q Consensus       340 ---~~~~~~~~~~l~~g~l~~~~~~t~~~-~l~~~~~A~~~l~~~~~~gKvvl~~  390 (392)
                         .+.++++++++++|++++....+..| +++|+++||+.+.+++..||+||++
T Consensus       310 ~~~~~~~~~~~~l~~~g~l~~~~~~~~~~~~l~~~~~A~~~~~~~~~~gKvvv~~  364 (364)
T 1gu7_A          310 ELKTSTLNQIIAWYEEGKLTDAKSIETLYDGTKPLHELYQDGVANSKDGKQLITY  364 (364)
T ss_dssp             HHHHHHHHHHHHHHHHTCCCCCCCEEEECCSSSCHHHHHHHHHHTGGGSCEEEEC
T ss_pred             HHHHHHHHHHHHHHHcCCcccccceEEecCchhhHHHHHHHHHhCCCCceEEEeC
Confidence               35688999999999999875544444 4569999999999988889999975

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP}

Probab=100.00  E-value=4.6e-48  Score=371.56  Aligned_cols=296  Identities=26%  Similarity=0.404  Sum_probs=249.9

Q ss_pred             eeEEEEcccCCcceEEEeccccCCCCCCCeEEEEEeEEecChHhHHhhcCCC-CCCCCCCCCcCCCceeEEEEEeCCCCC
Q 016265           84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKF-KATDSPLPTVPGYDVAGVVVKVGTQVK  162 (392)
Q Consensus        84 mka~v~~~~~~~~~l~~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~g~~-~~~~~~~p~v~G~e~~G~V~~vG~~v~  162 (392)
                      |||+++++++.++.++++ +.+.|+|++|||+|||.++|||++|++.+.|.+ +.....+|.++|||++|+|+++|++|+
T Consensus         2 Mka~~~~~~g~~~~l~~~-~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~~~~~~~p~i~G~e~~G~V~~vG~~v~   80 (333)
T 1wly_A            2 VMAAVIHKKGGPDNFVWE-EVKVGSPGPGQVRLRNTAIGVNFLDTYHRAGIPHPLVVGEPPIVVGFEAAAVVEEVGPGVT   80 (333)
T ss_dssp             CEEEEESSCSSGGGEEEE-ECCCCCCCTTEEEEEEEEEEECHHHHHHHC----------CCEECCCEEEEEEEEECTTCC
T ss_pred             cEEEEEcccCCcceeEEE-eccCCCCCCCeEEEEEEEEecCHHHHHHhCCCcCCCCCCCCCccccceeEEEEEEECCCCC
Confidence            899999998877778998 899999999999999999999999999999865 211135789999999999999999999


Q ss_pred             CCCCCCEEEecccccccCCCCCCCcceeEEEecCCceeeCCCCCCHHh--HhccchhHHHHHHHHH-hcCCCCCCeEEEE
Q 016265          163 EFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQ--AAGLPLAIETAYEGLE-RTGFSAGKSILVL  239 (392)
Q Consensus       163 ~~~vGdrV~~~~~~~~~~~~~~~G~~a~~~~v~~~~~~~iP~~l~~~~--aa~l~~~~~ta~~al~-~~~~~~g~~VlI~  239 (392)
                      +|++||||++...        ..|+|+||++++++.++++|+++++++  |+++++++.|||+++. .+++++|++|||+
T Consensus        81 ~~~~GdrV~~~~~--------~~G~~aey~~v~~~~~~~iP~~~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlV~  152 (333)
T 1wly_A           81 DFTVGERVCTCLP--------PLGAYSQERLYPAEKLIKVPKDLDLDDVHLAGLMLKGMTAQYLLHQTHKVKPGDYVLIH  152 (333)
T ss_dssp             SCCTTCEEEECSS--------SCCCSBSEEEEEGGGCEECCTTCCCCHHHHHHHHHHHHHHHHHHHTTSCCCTTCEEEET
T ss_pred             CCCCCCEEEEecC--------CCCcceeEEEecHHHcEeCCCCCChHHhCccchhhhHHHHHHHHHHhhCCCCCCEEEEE
Confidence            9999999977431        259999999999999999999999999  8999999999999996 6899999999999


Q ss_pred             cCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCCccccC------CCCccEEEecCc--cHHHHH
Q 016265          240 NGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFEDL------PEKFDVVYDAIG--QCDRAV  311 (392)
Q Consensus       240 Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~~~------~~~~D~vid~~G--~~~~~~  311 (392)
                      ||+|++|++++|+++. .|++|+++++++++++.++++|+++++|+.+.++.+.      ..++|++|||+|  .++.++
T Consensus       153 Ga~ggiG~~~~~~a~~-~G~~Vi~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~i~~~~~~~~~d~vi~~~g~~~~~~~~  231 (333)
T 1wly_A          153 AAAGGMGHIMVPWARH-LGATVIGTVSTEEKAETARKLGCHHTINYSTQDFAEVVREITGGKGVDVVYDSIGKDTLQKSL  231 (333)
T ss_dssp             TTTSTTHHHHHHHHHH-TTCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHHTTCCEEEEEECSCTTTHHHHH
T ss_pred             CCccHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHcCCCEEEECCCHHHHHHHHHHhCCCCCeEEEECCcHHHHHHHH
Confidence            9999999999999998 5999999999999999999999999999877654321      347999999998  468999


Q ss_pred             HhcccCCeEEEEcCCCC-CC-----------c--eEEEEe-----ec----HHHHHHHHHHHHCCCcccccCCCcccchh
Q 016265          312 KAIKEGGTVVALTGAVT-PP-----------G--FRFVVT-----SN----GEVLKKLNPYLESGKVKPIIDPKGPFPFS  368 (392)
Q Consensus       312 ~~l~~~G~iv~~g~~~~-~~-----------~--~~~~~~-----~~----~~~~~~~~~~l~~g~l~~~~~~t~~~~l~  368 (392)
                      ++++++|+++.+|.... ..           .  +.+...     ..    .+.++++++++++|++++.  ++++|+|+
T Consensus       232 ~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~--i~~~~~l~  309 (333)
T 1wly_A          232 DCLRPRGMCAAYGHASGVADPIRVVEDLGVRGSLFITRPALWHYMSNRSEIDEGSKCLFDAVKAGVLHSS--VAKTFPLR  309 (333)
T ss_dssp             HTEEEEEEEEECCCTTCCCCCCCHHHHTTTTTSCEEECCCGGGGSCSHHHHHHHHHHHHHHHHTTSCCCC--EEEEEEGG
T ss_pred             HhhccCCEEEEEecCCCCcCCCChhHhhhhcCCcEEEEEeehhhccCHHHHHHHHHHHHHHHHCCCcCCC--cceEEeHH
Confidence            99999999999986431 11           1  211100     02    2468899999999999865  56899999


Q ss_pred             hHHHHHHHHHhCCCCeeEEEEeC
Q 016265          369 QVVEAFSYIETNKATGKVVIHPI  391 (392)
Q Consensus       369 ~~~~A~~~l~~~~~~gKvvl~~~  391 (392)
                      |+++||+.+++++..||+|+++.
T Consensus       310 ~~~~A~~~~~~~~~~gKvvi~~~  332 (333)
T 1wly_A          310 EAAAAHKYMGGRQTIGSIVLLPQ  332 (333)
T ss_dssp             GHHHHHHHHHHCSCCSEEEEETT
T ss_pred             HHHHHHHHHHcCCCceEEEEEeC
Confidence            99999999999888899999864

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}

Probab=100.00  E-value=1e-48  Score=377.76  Aligned_cols=298  Identities=24%  Similarity=0.351  Sum_probs=231.3

Q ss_pred             cceeEEEEcccCCcceEEEeccccCCCCCCCeEEEEEeEEecChHhHHhhcCCCCCCCCCCCCcCCCceeEEEEEeCCCC
Q 016265           82 SEMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQV  161 (392)
Q Consensus        82 ~~mka~v~~~~~~~~~l~~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~~~p~v~G~e~~G~V~~vG~~v  161 (392)
                      .+|||+++++++..  ++++ +++.|+|++|||+|||.++|||++|++.+.|.++.....+|.++|||++|+|+++|++ 
T Consensus         2 ~~mka~~~~~~g~~--l~~~-~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~p~i~G~E~~G~V~~vG~~-   77 (344)
T 2h6e_A            2 VKSKAALLKKFSEP--LSIE-DVNIPEPQGEEVLIRIGGAGVCRTDLRVWKGVEAKQGFRLPIILGHENAGTIVEVGEL-   77 (344)
T ss_dssp             EEEEBCEECSCCC--------EEEECCCCTTCEEEEEEEEECCHHHHHHHTTSCCCTTCCSSEECCCCEEEEEEEECTT-
T ss_pred             ceeEEEEEecCCCC--CeEE-EeeCCCCCCCEEEEEEEEEEechhhHHHHcCCCcccCCCCCccccccceEEEEEECCC-
Confidence            36999999988743  7777 8999999999999999999999999999998764212357899999999999999999 


Q ss_pred             CCCCCCCEEEeccccc------------------ccCCCCCCCcceeEEEec-CCceeeCCCCCCHHhHhccchhHHHHH
Q 016265          162 KEFKEGDEVYGDINEK------------------ALEGPKQFGSLAEYTAVE-ERLLAPKPKNLDFVQAAGLPLAIETAY  222 (392)
Q Consensus       162 ~~~~vGdrV~~~~~~~------------------~~~~~~~~G~~a~~~~v~-~~~~~~iP~~l~~~~aa~l~~~~~ta~  222 (392)
                      ++|++||||++.....                  ...|...+|+|+||++++ ++.++++ +++++++|+.+++++.|||
T Consensus        78 ~~~~~GdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~G~~~~G~~aey~~v~~~~~~~~i-~~l~~~~aa~l~~~~~ta~  156 (344)
T 2h6e_A           78 AKVKKGDNVVVYATWGDLTCRYCREGKFNICKNQIIPGQTTNGGFSEYMLVKSSRWLVKL-NSLSPVEAAPLADAGTTSM  156 (344)
T ss_dssp             CCCCTTCEEEECSCBCCSCSTTGGGTCGGGCTTCBCBTTTBCCSSBSEEEESCGGGEEEE-SSSCHHHHGGGGTHHHHHH
T ss_pred             CCCCCCCEEEECCCCCCCCChhhhCCCcccCCCccccccccCCcceeeEEecCcccEEEe-CCCCHHHhhhhhhhhHHHH
Confidence            9999999997653210                  011223579999999999 9999999 9999999999999999999


Q ss_pred             HHHHhc-----CCCCCCeEEEEcCCCcHHHHHHHHHHHhc--CCeEEEEeCCcccHHHHHhcCCcEEEeCCC-Cccc-cC
Q 016265          223 EGLERT-----GFSAGKSILVLNGSGGVGSLVIQLAKQVF--GASRVAATSSTRNLEFLKSLGADLAIDYTK-DNFE-DL  293 (392)
Q Consensus       223 ~al~~~-----~~~~g~~VlI~Ga~G~vG~~aiqlak~~~--G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~-~~~~-~~  293 (392)
                      +++.+.     ++ +|++|||+|+ |++|++++|+||. .  |++|++++++++|+++++++|+++++|+.+ .++. +.
T Consensus       157 ~al~~~~~~~~~~-~g~~VlV~Ga-G~vG~~aiqlak~-~~~Ga~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~  233 (344)
T 2h6e_A          157 GAIRQALPFISKF-AEPVVIVNGI-GGLAVYTIQILKA-LMKNITIVGISRSKKHRDFALELGADYVSEMKDAESLINKL  233 (344)
T ss_dssp             HHHHHHHHHHTTC-SSCEEEEECC-SHHHHHHHHHHHH-HCTTCEEEEECSCHHHHHHHHHHTCSEEECHHHHHHHHHHH
T ss_pred             HHHHhhhhcccCC-CCCEEEEECC-CHHHHHHHHHHHH-hcCCCEEEEEeCCHHHHHHHHHhCCCEEeccccchHHHHHh
Confidence            999877     89 9999999996 9999999999998 6  999888889999999999999999998765 4332 22


Q ss_pred             --CCCccEEEecCcc---HHHHHHhcccCCeEEEEcCCCCCCce----------EEEE--eecHHHHHHHHHHHHCCCcc
Q 016265          294 --PEKFDVVYDAIGQ---CDRAVKAIKEGGTVVALTGAVTPPGF----------RFVV--TSNGEVLKKLNPYLESGKVK  356 (392)
Q Consensus       294 --~~~~D~vid~~G~---~~~~~~~l~~~G~iv~~g~~~~~~~~----------~~~~--~~~~~~~~~~~~~l~~g~l~  356 (392)
                        .+++|+||||+|.   ++.++++++++|+++.+|....+..+          .+..  ....+.++++++++++|+++
T Consensus       234 ~~g~g~D~vid~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~l~~~g~i~  313 (344)
T 2h6e_A          234 TDGLGASIAIDLVGTEETTYNLGKLLAQEGAIILVGMEGKRVSLEAFDTAVWNKKLLGSNYGSLNDLEDVVRLSESGKIK  313 (344)
T ss_dssp             HTTCCEEEEEESSCCHHHHHHHHHHEEEEEEEEECCCCSSCCCCCHHHHHHTTCEEEECCSCCHHHHHHHHHHHHTTSSC
T ss_pred             hcCCCccEEEECCCChHHHHHHHHHhhcCCEEEEeCCCCCCcccCHHHHhhCCcEEEEEecCCHHHHHHHHHHHHcCCCC
Confidence              3489999999983   58999999999999999865422111          1111  22467899999999999998


Q ss_pred             cccCCCcccchhhHHHHHHHHHhCCCCeeEEEEe
Q 016265          357 PIIDPKGPFPFSQVVEAFSYIETNKATGKVVIHP  390 (392)
Q Consensus       357 ~~~~~t~~~~l~~~~~A~~~l~~~~~~gKvvl~~  390 (392)
                      +.  + ++|+|+|+++||+.+++++..||+||++
T Consensus       314 ~~--i-~~~~l~~~~~A~~~~~~~~~~gKvvl~~  344 (344)
T 2h6e_A          314 PY--I-IKVPLDDINKAFTNLDEGRVDGRQVITP  344 (344)
T ss_dssp             CC--E-EEECC----------------CEEEECC
T ss_pred             cc--e-EEEeHHHHHHHHHHHHcCCCceEEEEeC
Confidence            76  4 7999999999999999988889999864

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A*

Probab=100.00  E-value=1.3e-47  Score=372.53  Aligned_cols=297  Identities=26%  Similarity=0.355  Sum_probs=252.3

Q ss_pred             CCcceeEEEEcccCCc--ceEEE-eccccCCCCCCCeEEEEEeEEecChHhHHhhcCCCCCCCCCCCCcCCCceeEEEEE
Q 016265           80 VPSEMKAWLYGEYGGV--DVLKF-DEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVK  156 (392)
Q Consensus        80 ~p~~mka~v~~~~~~~--~~l~~-~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~~~p~v~G~e~~G~V~~  156 (392)
                      +|.+|||+++++++..  +.+++ + ++|.|+|++|||+|||.++|||++|++.+.|.++. ...+|.++|||++|+|++
T Consensus        20 ~~~~MkA~~~~~~g~~~~~~l~~~~-~~p~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~-~~~~P~i~G~E~~G~V~~   97 (362)
T 2c0c_A           20 FQSMMQKLVVTRLSPNFREAVTLSR-DCPVPLPGDGDLLVRNRFVGVNASDINYSAGRYDP-SVKPPFDIGFEGIGEVVA   97 (362)
T ss_dssp             HCCEEEEEEECSCCSSHHHHEEEEE-EEECCCCCTTEEEEEEEEEECCTTHHHHHTTTTCT-TCCSCEECCSEEEEEEEE
T ss_pred             chhhceEEEEeecCCCccceeEEEe-ecCCCCCCCCeEEEEEEEeccCHHHHHHhcCCCCC-CCCCCCCCCceeEEEEEE
Confidence            5678999999998753  45888 7 89999999999999999999999999999997642 245789999999999999


Q ss_pred             eCCCCC-CCCCCCEEEecccccccCCCCCCCcceeEEEecCCceeeCCCCCCHHhHhccchhHHHHHHHHH-hcCCCCCC
Q 016265          157 VGTQVK-EFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLE-RTGFSAGK  234 (392)
Q Consensus       157 vG~~v~-~~~vGdrV~~~~~~~~~~~~~~~G~~a~~~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~al~-~~~~~~g~  234 (392)
                      +|++|+ +|++||||++..          .|+|+||++++++.++++|+. + .+++++++++.|||+++. .+++++|+
T Consensus        98 vG~~V~~~~~vGdrV~~~~----------~G~~aey~~v~~~~~~~~P~~-~-~~aaal~~~~~ta~~al~~~~~~~~g~  165 (362)
T 2c0c_A           98 LGLSASARYTVGQAVAYMA----------PGSFAEYTVVPASIATPVPSV-K-PEYLTLLVSGTTAYISLKELGGLSEGK  165 (362)
T ss_dssp             ECTTGGGTCCTTCEEEEEC----------SCCSBSEEEEEGGGCEECSSS-C-HHHHTTTTHHHHHHHHHHHHTCCCTTC
T ss_pred             ECCCccCCCCCCCEEEEcc----------CCcceeEEEEcHHHeEECCCC-c-hHhhcccchHHHHHHHHHHhcCCCCCC
Confidence            999999 999999999863          599999999999999999996 4 467778889999999995 57899999


Q ss_pred             eEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCCcccc-----CCCCccEEEecCcc--H
Q 016265          235 SILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFED-----LPEKFDVVYDAIGQ--C  307 (392)
Q Consensus       235 ~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~~-----~~~~~D~vid~~G~--~  307 (392)
                      +|||+||+|++|++++|+|+. .|++|++++++++|+++++++|+++++|+.+.++.+     ..+++|++|||+|.  +
T Consensus       166 ~VlV~Ga~G~iG~~~~q~a~~-~Ga~Vi~~~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~~~~~~~~g~D~vid~~g~~~~  244 (362)
T 2c0c_A          166 KVLVTAAAGGTGQFAMQLSKK-AKCHVIGTCSSDEKSAFLKSLGCDRPINYKTEPVGTVLKQEYPEGVDVVYESVGGAMF  244 (362)
T ss_dssp             EEEETTTTBTTHHHHHHHHHH-TTCEEEEEESSHHHHHHHHHTTCSEEEETTTSCHHHHHHHHCTTCEEEEEECSCTHHH
T ss_pred             EEEEeCCCcHHHHHHHHHHHh-CCCEEEEEECCHHHHHHHHHcCCcEEEecCChhHHHHHHHhcCCCCCEEEECCCHHHH
Confidence            999999999999999999998 599999999999999999999999999988765432     13579999999984  6


Q ss_pred             HHHHHhcccCCeEEEEcCCCCCC-----------c---------eEEEEee-------cHHHHHHHHHHHHCCCcccccC
Q 016265          308 DRAVKAIKEGGTVVALTGAVTPP-----------G---------FRFVVTS-------NGEVLKKLNPYLESGKVKPIID  360 (392)
Q Consensus       308 ~~~~~~l~~~G~iv~~g~~~~~~-----------~---------~~~~~~~-------~~~~~~~~~~~l~~g~l~~~~~  360 (392)
                      +.++++++++|+++.+|......           .         +.+....       ..+.++++++++++|++++.+.
T Consensus       245 ~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~l~~~g~l~~~~~  324 (362)
T 2c0c_A          245 DLAVDALATKGRLIVIGFISGYQTPTGLSPVKAGTLPAKLLKKSASVQGFFLNHYLSKYQAAMSHLLEMCVSGDLVCEVD  324 (362)
T ss_dssp             HHHHHHEEEEEEEEECCCGGGTTSSSCCCCCCCTTHHHHHHHHTCEEEECCGGGCGGGHHHHHHHHHHHHHTTCSCCCEE
T ss_pred             HHHHHHHhcCCEEEEEeCCCCcCcccccccccccccHHHHHhhcceEEEEEhhhhhhhHHHHHHHHHHHHHCCCeEeeec
Confidence            88999999999999997643100           1         1111111       2467899999999999998754


Q ss_pred             ------CCcccchhhHHHHHHHHHhCCCCeeEEEEeC
Q 016265          361 ------PKGPFPFSQVVEAFSYIETNKATGKVVIHPI  391 (392)
Q Consensus       361 ------~t~~~~l~~~~~A~~~l~~~~~~gKvvl~~~  391 (392)
                            +++.|+|+++++||+.+++++..||+|+++.
T Consensus       325 ~~~~~~~~~~~~l~~~~~A~~~~~~~~~~gKvvv~~~  361 (362)
T 2c0c_A          325 LGDLSPEGRFTGLESIFRAVNYMYMGKNTGKIVVELP  361 (362)
T ss_dssp             CSTTSTTCSCBSTTHHHHHHHHHHTTCCSBEEEEECC
T ss_pred             cccccccccccCHHHHHHHHHHHHcCCCCceEEEEcC
Confidence                  4567899999999999999888899999863

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*

Probab=100.00  E-value=3.4e-47  Score=370.12  Aligned_cols=299  Identities=20%  Similarity=0.257  Sum_probs=249.2

Q ss_pred             eeEEEEcccCCcceEEEeccccCCCCCCCeEEEEEeEEecChHhHHhhcCCCCCCCCCCCCcCCCceeEEEEEeCCCCCC
Q 016265           84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKE  163 (392)
Q Consensus        84 mka~v~~~~~~~~~l~~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~~~p~v~G~e~~G~V~~vG~~v~~  163 (392)
                      ||++.+..++..+.++++ +++.|+|++|||+|||.++|||++|++.+.|.++.  ..+|.++|||++|+|+++|++|++
T Consensus        15 mk~~~~~~~~~~~~l~~~-~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~--~~~P~v~GhE~~G~V~~vG~~V~~   91 (366)
T 1yqd_A           15 VKAFGWAARDQSGHLSPF-NFSRRATGEEDVRFKVLYCGVCHSDLHSIKNDWGF--SMYPLVPGHEIVGEVTEVGSKVKK   91 (366)
T ss_dssp             EEEEEEEECSTTCCEEEE-EEEECCCCTTEEEEEEEEEEECHHHHHHHHTSSSC--CCSSBCCCCCEEEEEEEECTTCCS
T ss_pred             eeEEEEEEcCCCCCcEEE-EccCCCCCCCeEEEEEEEEeechhhHHHHcCCCCC--CCCCEecccceEEEEEEECCCCCc
Confidence            565555555555558888 89999999999999999999999999999987642  457899999999999999999999


Q ss_pred             CCCCCEEEeccc-----cc--cc-------------------CCCCCCCcceeEEEecCCceeeCCCCCCHHhHhccchh
Q 016265          164 FKEGDEVYGDIN-----EK--AL-------------------EGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLA  217 (392)
Q Consensus       164 ~~vGdrV~~~~~-----~~--~~-------------------~~~~~~G~~a~~~~v~~~~~~~iP~~l~~~~aa~l~~~  217 (392)
                      |++||||++...     .+  +.                   .+...+|+|+||++++++.++++|+++++++||.++++
T Consensus        92 ~~vGDrV~~~~~~~~Cg~C~~c~~g~~~~C~~~~~~~~~~~~~g~~~~G~~aey~~v~~~~~~~~P~~ls~~~aa~l~~~  171 (366)
T 1yqd_A           92 VNVGDKVGVGCLVGACHSCESCANDLENYCPKMILTYASIYHDGTITYGGYSNHMVANERYIIRFPDNMPLDGGAPLLCA  171 (366)
T ss_dssp             CCTTCEEEECSEEECCSSSHHHHTTCGGGCTTCEESSSSBCTTSCBCCCSSBSEEEEEGGGCEECCTTSCTTTTGGGGTH
T ss_pred             CCCCCEEEEcCCcCCCCCChhhhCcCcccCCcccccccccccCCCcCCCccccEEEEchhhEEECCCCCCHHHhhhhhhh
Confidence            999999985211     00  00                   01225699999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCC-CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHH-hcCCcEEEeCCCCc-cccCC
Q 016265          218 IETAYEGLERTGFS-AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLK-SLGADLAIDYTKDN-FEDLP  294 (392)
Q Consensus       218 ~~ta~~al~~~~~~-~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~-~~G~~~vi~~~~~~-~~~~~  294 (392)
                      +.|||+++++.+++ +|++|||+| +|++|++++|+|+. .|++|+++++++++++.++ ++|+++++|+.+.+ ..+..
T Consensus       172 ~~ta~~al~~~~~~~~g~~VlV~G-aG~vG~~~~q~a~~-~Ga~Vi~~~~~~~~~~~~~~~lGa~~v~~~~~~~~~~~~~  249 (366)
T 1yqd_A          172 GITVYSPLKYFGLDEPGKHIGIVG-LGGLGHVAVKFAKA-FGSKVTVISTSPSKKEEALKNFGADSFLVSRDQEQMQAAA  249 (366)
T ss_dssp             HHHHHHHHHHTTCCCTTCEEEEEC-CSHHHHHHHHHHHH-TTCEEEEEESCGGGHHHHHHTSCCSEEEETTCHHHHHHTT
T ss_pred             HHHHHHHHHhcCcCCCCCEEEEEC-CCHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHhcCCceEEeccCHHHHHHhh
Confidence            99999999888888 999999998 69999999999998 5999999999999999887 99999999987643 33345


Q ss_pred             CCccEEEecCc---cHHHHHHhcccCCeEEEEcCCCCCCc----------eEEEE--eecHHHHHHHHHHHHCCCccccc
Q 016265          295 EKFDVVYDAIG---QCDRAVKAIKEGGTVVALTGAVTPPG----------FRFVV--TSNGEVLKKLNPYLESGKVKPII  359 (392)
Q Consensus       295 ~~~D~vid~~G---~~~~~~~~l~~~G~iv~~g~~~~~~~----------~~~~~--~~~~~~~~~~~~~l~~g~l~~~~  359 (392)
                      +++|+|||++|   .++.++++++++|+++.+|....+..          +.+..  ....+.+.++++++++|++++.+
T Consensus       250 ~~~D~vid~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~l~~~g~l~~~~  329 (366)
T 1yqd_A          250 GTLDGIIDTVSAVHPLLPLFGLLKSHGKLILVGAPEKPLELPAFSLIAGRKIVAGSGIGGMKETQEMIDFAAKHNITADI  329 (366)
T ss_dssp             TCEEEEEECCSSCCCSHHHHHHEEEEEEEEECCCCSSCEEECHHHHHTTTCEEEECCSCCHHHHHHHHHHHHHTTCCCCE
T ss_pred             CCCCEEEECCCcHHHHHHHHHHHhcCCEEEEEccCCCCCCcCHHHHHhCCcEEEEecCCCHHHHHHHHHHHHcCCCCCce
Confidence            68999999998   36899999999999999986542211          11111  12356789999999999998753


Q ss_pred             CCCcccchhhHHHHHHHHHhCCCCeeEEEEe
Q 016265          360 DPKGPFPFSQVVEAFSYIETNKATGKVVIHP  390 (392)
Q Consensus       360 ~~t~~~~l~~~~~A~~~l~~~~~~gKvvl~~  390 (392)
                         ++|||+|+++||+.+++++..||+|+++
T Consensus       330 ---~~~~l~~~~~A~~~~~~~~~~gKvvl~~  357 (366)
T 1yqd_A          330 ---EVISTDYLNTAMERLAKNDVRYRFVIDV  357 (366)
T ss_dssp             ---EEECGGGHHHHHHHHHTTCCSSEEEECH
T ss_pred             ---EEEcHHHHHHHHHHHHcCCcceEEEEEc
Confidence               6899999999999999998889999975

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A*

Probab=100.00  E-value=6.2e-48  Score=372.14  Aligned_cols=299  Identities=23%  Similarity=0.282  Sum_probs=249.9

Q ss_pred             eeEEEEcccCCcceEEEeccccCCCCCCCeEEEEEeEEecChHhHHhhcCCCCC-CCCCCCCcCCCceeEEEEEeCCCCC
Q 016265           84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKA-TDSPLPTVPGYDVAGVVVKVGTQVK  162 (392)
Q Consensus        84 mka~v~~~~~~~~~l~~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~-~~~~~p~v~G~e~~G~V~~vG~~v~  162 (392)
                      |||+++++++++  ++++ ++|.|+|++|||+|||.++|||++|++.+.|.++. ....+|.++|||++|+|+++|++|+
T Consensus         1 Mka~~~~~~g~~--l~~~-~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~p~v~G~E~~G~V~~vG~~v~   77 (343)
T 2dq4_A            1 MRALAKLAPEEG--LTLV-DRPVPEPGPGEILVRVEAASICGTDLHIWKWDAWARGRIRPPLVTGHEFSGVVEAVGPGVR   77 (343)
T ss_dssp             CEEEEECSSSSS--CEEE-ECCCCCCCTTEEEEEEEEEECCHHHHHHHTTCHHHHHHCCSSEECCCEEEEEEEEECTTCC
T ss_pred             CeEEEEeCCCCc--EEEE-eccCCCCCCCEEEEEEEEEeechhhHHHHcCCCCccccCCCCCcCCccceEEEEEECCCCC
Confidence            799999998864  7778 89999999999999999999999999999986531 0135789999999999999999999


Q ss_pred             CCCCCCEEEeccccc------------------ccCCCCCCCcceeEEEecCCceeeCCCCCCHHhHhccchhHHHHHHH
Q 016265          163 EFKEGDEVYGDINEK------------------ALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEG  224 (392)
Q Consensus       163 ~~~vGdrV~~~~~~~------------------~~~~~~~~G~~a~~~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~a  224 (392)
                      +|++||||++.....                  ...|...+|+|+||++++++.++++|+++++++|+.+ .++.|||++
T Consensus        78 ~~~vGdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~g~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~~-~~~~ta~~~  156 (343)
T 2dq4_A           78 RPQVGDHVSLESHIVCHACPACRTGNYHVCLNTQILGVDRDGGFAEYVVVPAENAWVNPKDLPFEVAAIL-EPFGNAVHT  156 (343)
T ss_dssp             SSCTTCEEEECCEECCSCSHHHHTTCGGGCTTCEEBTTTBCCSSBSEEEEEGGGEEEECTTSCHHHHTTH-HHHHHHHHH
T ss_pred             cCCCCCEEEECCCCCCCCChhhhCcCcccCCCcceecCCCCCcceeEEEEchHHeEECCCCCCHHHHHhh-hHHHHHHHH
Confidence            999999999753211                  0123345799999999999999999999999999876 466799999


Q ss_pred             HH-hcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCC-eEEEEeCCcccHHHHHhcCCcEEEeCCCCccccC-----CCCc
Q 016265          225 LE-RTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGA-SRVAATSSTRNLEFLKSLGADLAIDYTKDNFEDL-----PEKF  297 (392)
Q Consensus       225 l~-~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~-~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~~~-----~~~~  297 (392)
                      +. .+++ +|++|||+|+ |++|++++|+||.+ |+ +|++++++++|+++++++ +++++|+.++++.+.     .+++
T Consensus       157 l~~~~~~-~g~~VlV~Ga-G~vG~~~~q~a~~~-Ga~~Vi~~~~~~~~~~~~~~l-a~~v~~~~~~~~~~~~~~~~~~g~  232 (343)
T 2dq4_A          157 VYAGSGV-SGKSVLITGA-GPIGLMAAMVVRAS-GAGPILVSDPNPYRLAFARPY-ADRLVNPLEEDLLEVVRRVTGSGV  232 (343)
T ss_dssp             HHSTTCC-TTSCEEEECC-SHHHHHHHHHHHHT-TCCSEEEECSCHHHHGGGTTT-CSEEECTTTSCHHHHHHHHHSSCE
T ss_pred             HHHhCCC-CCCEEEEECC-CHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHHHh-HHhccCcCccCHHHHHHHhcCCCC
Confidence            98 8889 9999999997 99999999999984 99 899999999999999999 999999987665332     4589


Q ss_pred             cEEEecCcc---HHHHHHhcccCCeEEEEcCCCCCCce-----------EEEEe--e-cHHHHHHHHHHHHCCCcccccC
Q 016265          298 DVVYDAIGQ---CDRAVKAIKEGGTVVALTGAVTPPGF-----------RFVVT--S-NGEVLKKLNPYLESGKVKPIID  360 (392)
Q Consensus       298 D~vid~~G~---~~~~~~~l~~~G~iv~~g~~~~~~~~-----------~~~~~--~-~~~~~~~~~~~l~~g~l~~~~~  360 (392)
                      |+|||++|.   ++.++++++++|+++.+|....+..+           .+...  . ..+.++++++++++|+++....
T Consensus       233 D~vid~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~l~~~g~~~~~~~  312 (343)
T 2dq4_A          233 EVLLEFSGNEAAIHQGLMALIPGGEARILGIPSDPIRFDLAGELVMRGITAFGIAGRRLWQTWMQGTALVYSGRVDLSPL  312 (343)
T ss_dssp             EEEEECSCCHHHHHHHHHHEEEEEEEEECCCCSSCEEECHHHHTGGGTCEEEECCSCCTTHHHHHHHHHHHHTSSCCGGG
T ss_pred             CEEEECCCCHHHHHHHHHHHhcCCEEEEEecCCCCceeCcHHHHHhCceEEEEeecCCCHHHHHHHHHHHHcCCCChHHh
Confidence            999999984   58899999999999999865422111           11111  1 3577999999999999765555


Q ss_pred             CCcccchhhHHHHHHHHHhCCCCeeEEEEeC
Q 016265          361 PKGPFPFSQVVEAFSYIETNKATGKVVIHPI  391 (392)
Q Consensus       361 ~t~~~~l~~~~~A~~~l~~~~~~gKvvl~~~  391 (392)
                      ++++|+++|+++||+.+++++. ||+|++++
T Consensus       313 i~~~~~l~~~~~A~~~~~~~~~-gKvv~~~~  342 (343)
T 2dq4_A          313 LTHRLPLSRYREAFGLLASGQA-VKVILDPK  342 (343)
T ss_dssp             EEEEEEGGGHHHHHHHHHHSSC-SEEEEETT
T ss_pred             eeEEecHHHHHHHHHHHhcCCc-eEEEEeeC
Confidence            6789999999999999999887 99999874

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A*

Probab=100.00  E-value=2.2e-47  Score=368.86  Aligned_cols=299  Identities=29%  Similarity=0.394  Sum_probs=252.7

Q ss_pred             eeEEEEcccCCcceEEEeccccCCCCCCCeEEEEEeEEecChHhHHhhcCCCCC------CCCCCCCcCCCceeEEEEEe
Q 016265           84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKA------TDSPLPTVPGYDVAGVVVKV  157 (392)
Q Consensus        84 mka~v~~~~~~~~~l~~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~------~~~~~p~v~G~e~~G~V~~v  157 (392)
                      |||+++++++..  ++++ ++|.|+|++|||+|||.++|||++|++.+.|.++.      ....+|.++|||++|+|+++
T Consensus         1 Mka~~~~~~g~~--l~~~-~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~~~~~~p~i~G~e~~G~V~~v   77 (347)
T 1jvb_A            1 MRAVRLVEIGKP--LSLQ-EIGVPKPKGPQVLIKVEAAGVCHSDVHMRQGRFGNLRIVEDLGVKLPVTLGHEIAGKIEEV   77 (347)
T ss_dssp             CEEEEECSTTSC--CEEE-ECCCCCCCTTCEEEEEEEEEECTHHHHHTTTEETTEETTTTTCCCSCEECCCEEEEEEEEE
T ss_pred             CeEEEEecCCCC--eEEE-EeeCCCCCCCeEEEEEEEEEecHHHHHHhcCCCcccccccccCCCCCccccccceEEEEEE
Confidence            799999988744  7777 89999999999999999999999999999886541      02357899999999999999


Q ss_pred             CCCCCCCCCCCEEEeccccc------------------ccCCCCCCCcceeEEEecC-CceeeCCCCCCHHhHhccchhH
Q 016265          158 GTQVKEFKEGDEVYGDINEK------------------ALEGPKQFGSLAEYTAVEE-RLLAPKPKNLDFVQAAGLPLAI  218 (392)
Q Consensus       158 G~~v~~~~vGdrV~~~~~~~------------------~~~~~~~~G~~a~~~~v~~-~~~~~iP~~l~~~~aa~l~~~~  218 (392)
                      |++|++|++||||++.....                  ...|...+|+|+||+++++ +.++++ +++++++|+.+++++
T Consensus        78 G~~v~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~G~~~~G~~aey~~v~~~~~~~~i-~~~~~~~aa~l~~~~  156 (347)
T 1jvb_A           78 GDEVVGYSKGDLVAVNPWQGEGNCYYCRIGEEHLCDSPRWLGINFDGAYAEYVIVPHYKYMYKL-RRLNAVEAAPLTCSG  156 (347)
T ss_dssp             CTTCCSCCTTCEEEECCEECCSSSHHHHTTCGGGCSSCEEBTTTBCCSSBSEEEESCGGGEEEC-SSSCHHHHGGGGTHH
T ss_pred             CCCCCCCCCCCEEEeCCCCCCCCChhhhCcCcccCcccccccccCCCcceeEEEecCccceEEe-CCCCHHHcccchhhH
Confidence            99999999999997643110                  0122335799999999999 999999 999999999999999


Q ss_pred             HHHHHHHHhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhc-CCeEEEEeCCcccHHHHHhcCCcEEEeCCCCcc----ccC
Q 016265          219 ETAYEGLERTGFSAGKSILVLNGSGGVGSLVIQLAKQVF-GASRVAATSSTRNLEFLKSLGADLAIDYTKDNF----EDL  293 (392)
Q Consensus       219 ~ta~~al~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~-G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~----~~~  293 (392)
                      .|||++++++++++|++|||+|++|++|++++|+|+. . |++|+++++++++++.++++|+++++|+.+.++    .+.
T Consensus       157 ~ta~~~l~~~~~~~g~~vlV~Gagg~iG~~~~~~a~~-~~Ga~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  235 (347)
T 1jvb_A          157 ITTYRAVRKASLDPTKTLLVVGAGGGLGTMAVQIAKA-VSGATIIGVDVREEAVEAAKRAGADYVINASMQDPLAEIRRI  235 (347)
T ss_dssp             HHHHHHHHHTTCCTTCEEEEETTTSHHHHHHHHHHHH-HTCCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHH
T ss_pred             HHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHHHH-cCCCeEEEEcCCHHHHHHHHHhCCCEEecCCCccHHHHHHHH
Confidence            9999999889999999999999877999999999998 6 999999999999999999999999999877654    222


Q ss_pred             C--CCccEEEecCcc---HHHHHHhcccCCeEEEEcCCC-CCCce----------EEE--EeecHHHHHHHHHHHHCCCc
Q 016265          294 P--EKFDVVYDAIGQ---CDRAVKAIKEGGTVVALTGAV-TPPGF----------RFV--VTSNGEVLKKLNPYLESGKV  355 (392)
Q Consensus       294 ~--~~~D~vid~~G~---~~~~~~~l~~~G~iv~~g~~~-~~~~~----------~~~--~~~~~~~~~~~~~~l~~g~l  355 (392)
                      .  +++|++||++|.   ++.++++++++|+++.+|... .+ .+          .+.  .....+.++++++++++|++
T Consensus       236 ~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~-~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~l~~~g~l  314 (347)
T 1jvb_A          236 TESKGVDAVIDLNNSEKTLSVYPKALAKQGKYVMVGLFGADL-HYHAPLITLSEIQFVGSLVGNQSDFLGIMRLAEAGKV  314 (347)
T ss_dssp             TTTSCEEEEEESCCCHHHHTTGGGGEEEEEEEEECCSSCCCC-CCCHHHHHHHTCEEEECCSCCHHHHHHHHHHHHTTSS
T ss_pred             hcCCCceEEEECCCCHHHHHHHHHHHhcCCEEEEECCCCCCC-CCCHHHHHhCceEEEEEeccCHHHHHHHHHHHHcCCC
Confidence            2  489999999984   478899999999999998654 22 21          111  11246789999999999999


Q ss_pred             ccccCCCcccchhhHHHHHHHHHhCCCCeeEEEEe
Q 016265          356 KPIIDPKGPFPFSQVVEAFSYIETNKATGKVVIHP  390 (392)
Q Consensus       356 ~~~~~~t~~~~l~~~~~A~~~l~~~~~~gKvvl~~  390 (392)
                      ++.  ++++|+|+|+++||+.+++++..||+||++
T Consensus       315 ~~~--i~~~~~l~~~~~A~~~~~~~~~~gKvvl~~  347 (347)
T 1jvb_A          315 KPM--ITKTMKLEEANEAIDNLENFKAIGRQVLIP  347 (347)
T ss_dssp             CCC--CEEEEEGGGHHHHHHHHHTTCCCSEEEEEC
T ss_pred             Cce--EEEEEcHHHHHHHHHHHHCCCCcceEEecC
Confidence            764  568999999999999999998889999975

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=100.00  E-value=1.1e-47  Score=377.62  Aligned_cols=298  Identities=20%  Similarity=0.287  Sum_probs=248.3

Q ss_pred             ceeEEEEcccCCcceEEEeccccCCCC-CC-----CeEEEEEeEEecChHhHHhhcCCCCCCCCCCCCcCCCceeEEEEE
Q 016265           83 EMKAWLYGEYGGVDVLKFDEKVTVPQV-KE-----DQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVK  156 (392)
Q Consensus        83 ~mka~v~~~~~~~~~l~~~~~~~~p~~-~~-----~eVlV~v~~~~i~~~D~~~~~g~~~~~~~~~p~v~G~e~~G~V~~  156 (392)
                      +|||+++++++.   ++++ +++.|+| ++     |||+|||.++|||++|++.+.|.++   ..+|.++|||++|+|++
T Consensus         2 ~MkA~~~~~~~~---l~~~-~~p~P~~~~~~~~~~~eVlVkv~a~gic~~D~~~~~G~~~---~~~p~v~GhE~~G~V~~   74 (398)
T 2dph_A            2 GNKSVVYHGTRD---LRVE-TVPYPKLEHNNRKLEHAVILKVVSTNICGSDQHIYRGRFI---VPKGHVLGHEITGEVVE   74 (398)
T ss_dssp             CEEEEEEEETTE---EEEE-EECCCCSEETTEECTTCEEEEEEEEECCHHHHHHHTTSSC---CCTTCBCCCCEEEEEEE
T ss_pred             ccEEEEEEcCCC---EEEE-EccCCCCCCCcCCCCCeEEEEEEEEeecHHHHHHhcCCCC---CCCCcccCCceEEEEEE
Confidence            599999998754   7888 8999988 68     9999999999999999999998642   45789999999999999


Q ss_pred             eCCCCCCCCCCCEEEecccccc--------------------------cCCC---CCCCcceeEEEecCC--ceeeCCCC
Q 016265          157 VGTQVKEFKEGDEVYGDINEKA--------------------------LEGP---KQFGSLAEYTAVEER--LLAPKPKN  205 (392)
Q Consensus       157 vG~~v~~~~vGdrV~~~~~~~~--------------------------~~~~---~~~G~~a~~~~v~~~--~~~~iP~~  205 (392)
                      +|++|++|++||||++.....+                          ..|.   ..+|+|+||++++++  .++++|++
T Consensus        75 vG~~v~~~~vGDrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~~~~~~G~~~~~~~G~~aey~~v~~~~~~~~~iP~~  154 (398)
T 2dph_A           75 KGSDVELMDIGDLVSVPFNVACGRCRNCKEARSDVCENNLVNPDADLGAFGFDLKGWSGGQAEYVLVPYADYMLLKFGDK  154 (398)
T ss_dssp             ECTTCCSCCTTCEEECCSBCCCSCSHHHHTTCGGGCCCTTTCSSSSCCBTTTTBSSCCCSSBSEEEESSHHHHCEECSSH
T ss_pred             ECCCCCCCCCCCEEEEcCCCCCCCChhhhCcCcccCCCccccccccccccccccCCCCceeeeeEEeccccCeEEECCCC
Confidence            9999999999999987431100                          0111   246999999999987  89999999


Q ss_pred             CCHHh----HhccchhHHHHHHHHHhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCC-eEEEEeCCcccHHHHHhcCCc
Q 016265          206 LDFVQ----AAGLPLAIETAYEGLERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGA-SRVAATSSTRNLEFLKSLGAD  280 (392)
Q Consensus       206 l~~~~----aa~l~~~~~ta~~al~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~-~vv~~~~~~~~~~~~~~~G~~  280 (392)
                      +++++    ++++++++.|||++++.+++++|++|||+| +|++|++++|+||.+ |+ +|++++++++|+++++++|++
T Consensus       155 ~~~~~~~~~aa~l~~~~~ta~~al~~~~~~~g~~VlV~G-aG~vG~~aiqlak~~-Ga~~Vi~~~~~~~~~~~a~~lGa~  232 (398)
T 2dph_A          155 EQAMEKIKDLTLISDILPTGFHGCVSAGVKPGSHVYIAG-AGPVGRCAAAGARLL-GAACVIVGDQNPERLKLLSDAGFE  232 (398)
T ss_dssp             HHHHHTHHHHTTTTTHHHHHHHHHHHTTCCTTCEEEEEC-CSHHHHHHHHHHHHH-TCSEEEEEESCHHHHHHHHTTTCE
T ss_pred             CChhhhcchhhhhcCHHHHHHHHHHHcCCCCCCEEEEEC-CCHHHHHHHHHHHHc-CCCEEEEEcCCHHHHHHHHHcCCc
Confidence            99998    888899999999999989999999999999 699999999999995 99 888889999999999999996


Q ss_pred             EEEeCCCCcc-cc-C-----CCCccEEEecCcc-----------------HHHHHHhcccCCeEEEEcCCC--C------
Q 016265          281 LAIDYTKDNF-ED-L-----PEKFDVVYDAIGQ-----------------CDRAVKAIKEGGTVVALTGAV--T------  328 (392)
Q Consensus       281 ~vi~~~~~~~-~~-~-----~~~~D~vid~~G~-----------------~~~~~~~l~~~G~iv~~g~~~--~------  328 (392)
                       ++|+.+.++ .+ +     ..++|+||||+|.                 ++.++++++++|+++.+|...  .      
T Consensus       233 -~i~~~~~~~~~~~~~~~~~g~g~Dvvid~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~gG~iv~~G~~~~~~~~~~~~  311 (398)
T 2dph_A          233 -TIDLRNSAPLRDQIDQILGKPEVDCGVDAVGFEAHGLGDEANTETPNGALNSLFDVVRAGGAIGIPGIYVGSDPDPVNK  311 (398)
T ss_dssp             -EEETTSSSCHHHHHHHHHSSSCEEEEEECSCTTCBCSGGGTTSBCTTHHHHHHHHHEEEEEEEECCSCCCSCCSSCSSH
T ss_pred             -EEcCCCcchHHHHHHHHhCCCCCCEEEECCCCccccccccccccccHHHHHHHHHHHhcCCEEEEeccccccccccccc
Confidence             889877654 32 1     2379999999983                 588999999999999998652  0      


Q ss_pred             ---CCceEEE-----------E---eecHHHHHHHHHHHHCCCcc--cccCCCcccchhhHHHHHHHHHhCCCCeeEEEE
Q 016265          329 ---PPGFRFV-----------V---TSNGEVLKKLNPYLESGKVK--PIIDPKGPFPFSQVVEAFSYIETNKATGKVVIH  389 (392)
Q Consensus       329 ---~~~~~~~-----------~---~~~~~~~~~~~~~l~~g~l~--~~~~~t~~~~l~~~~~A~~~l~~~~~~gKvvl~  389 (392)
                         ...+.+.           .   ....+.++++++++++|+++  +...++++|+|+|+++||+.+.+++. ||+||+
T Consensus       312 ~~~~~~~~~~~~~~~~k~~~i~g~~~~~~~~~~~~~~l~~~g~l~~~~~~~i~~~~~l~~~~~A~~~~~~~~~-gKvvv~  390 (398)
T 2dph_A          312 DAGSGRLHLDFGKMWTKSIRIMTGMAPVTNYNRHLTEAILWDQMPYLSKVMNIEVITLDQAPDGYAKFDKGSP-AKFVID  390 (398)
T ss_dssp             HHHTTEEEEEHHHHHHTTCEEECSSCCGGGTHHHHHHHHHTTCCHHHHHHHCEEEECSTTHHHHHHHHHTTCS-CEEEEC
T ss_pred             cccCCcccccHHHHhhcCCEEEEeccCcHHHHHHHHHHHHcCCCCccchhhEEEEEcHHHHHHHHHHHhcCCc-eEEEEe
Confidence               1111111           0   11245688999999999999  76556789999999999999999888 999998


Q ss_pred             eC
Q 016265          390 PI  391 (392)
Q Consensus       390 ~~  391 (392)
                      ++
T Consensus       391 ~~  392 (398)
T 2dph_A          391 PH  392 (398)
T ss_dssp             TT
T ss_pred             cC
Confidence            74

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=5.5e-47  Score=370.40  Aligned_cols=300  Identities=19%  Similarity=0.286  Sum_probs=250.3

Q ss_pred             CCcceeEEEEcccCCcceEEEeccccCCCCCCCeEEEEEeEEecChHhHHhhcCCCCCCCCCCCCcCCCceeEEEEEeCC
Q 016265           80 VPSEMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGT  159 (392)
Q Consensus        80 ~p~~mka~v~~~~~~~~~l~~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~~~p~v~G~e~~G~V~~vG~  159 (392)
                      |--+|||++++++++  .++++ +++.|+|++|||||||.++|||++|++.+.|.++  ...+|.++|||++|+|+++| 
T Consensus        14 ~~~~mka~~~~~~g~--~l~~~-~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~--~~~~P~v~GhE~~G~V~~vG-   87 (380)
T 1vj0_A           14 MGLKAHAMVLEKFNQ--PLVYK-EFEISDIPRGSILVEILSAGVCGSDVHMFRGEDP--RVPLPIILGHEGAGRVVEVN-   87 (380)
T ss_dssp             CCEEEEEEEBCSTTS--CCEEE-EEEECCCCTTCEEEEEEEEEECHHHHHHHTTCCT--TCCSSBCCCCEEEEEEEEES-
T ss_pred             hhhheEEEEEecCCC--CeEEE-EccCCCCCCCEEEEEEeEEeecccchHHhcCCCC--CCCCCcccCcCcEEEEEEeC-
Confidence            456799999999882  37888 8999999999999999999999999999999764  24578999999999999999 


Q ss_pred             CCC------CCCCCCEEEecccccc-------------------cCCC--------CCCCcceeEEEe-cCCceeeCCCC
Q 016265          160 QVK------EFKEGDEVYGDINEKA-------------------LEGP--------KQFGSLAEYTAV-EERLLAPKPKN  205 (392)
Q Consensus       160 ~v~------~~~vGdrV~~~~~~~~-------------------~~~~--------~~~G~~a~~~~v-~~~~~~~iP~~  205 (392)
                      +|+      +|++||||++.+...+                   ..|.        ..+|+|+||+++ +++.++++|++
T Consensus        88 ~V~~~~~~~~~~vGdrV~~~~~~~cg~C~~C~~~g~~~~C~~~~~~g~~~~~~~~~~~~G~~aey~~v~~~~~~~~iP~~  167 (380)
T 1vj0_A           88 GEKRDLNGELLKPGDLIVWNRGITCGECYWCKVSKEPYLCPNRKVYGINRGCSEYPHLRGCYSSHIVLDPETDVLKVSEK  167 (380)
T ss_dssp             SCCBCTTSCBCCTTCEEEECSEECCSSSHHHHTSCCGGGCTTCEETTTTCCSSSTTCCCSSSBSEEEECTTCCEEEECTT
T ss_pred             CccccccCCCCCCCCEEEEcccCCCCCCHHHhcCCCcccCCCcceeccccccCCCCCCCccccceEEEcccceEEECCCC
Confidence            999      9999999997531100                   0121        347999999999 99999999999


Q ss_pred             CCHH-hHhccchhHHHHHHHHHhcC-CCCCCeEEEEcCCCcHHHHHHHHHHHhcC-CeEEEEeCCcccHHHHHhcCCcEE
Q 016265          206 LDFV-QAAGLPLAIETAYEGLERTG-FSAGKSILVLNGSGGVGSLVIQLAKQVFG-ASRVAATSSTRNLEFLKSLGADLA  282 (392)
Q Consensus       206 l~~~-~aa~l~~~~~ta~~al~~~~-~~~g~~VlI~Ga~G~vG~~aiqlak~~~G-~~vv~~~~~~~~~~~~~~~G~~~v  282 (392)
                      ++++ +|+.+. ++.|||++++.++ +++|++|||+| +|++|++++|+||.+ | ++|++++++++|+++++++|++++
T Consensus       168 l~~~~~Aa~~~-~~~ta~~al~~~~~~~~g~~VlV~G-aG~vG~~aiqlak~~-Ga~~Vi~~~~~~~~~~~~~~lGa~~v  244 (380)
T 1vj0_A          168 DDLDVLAMAMC-SGATAYHAFDEYPESFAGKTVVIQG-AGPLGLFGVVIARSL-GAENVIVIAGSPNRLKLAEEIGADLT  244 (380)
T ss_dssp             SCHHHHHHHTT-HHHHHHHHHHTCSSCCBTCEEEEEC-CSHHHHHHHHHHHHT-TBSEEEEEESCHHHHHHHHHTTCSEE
T ss_pred             CChHHhHhhhc-HHHHHHHHHHhcCCCCCCCEEEEEC-cCHHHHHHHHHHHHc-CCceEEEEcCCHHHHHHHHHcCCcEE
Confidence            9999 666555 8999999999889 99999999999 999999999999984 9 599999999999999999999999


Q ss_pred             EeCC---CCcccc----C--CCCccEEEecCcc---HHHHHHhcccCCeEEEEcCCC-C-CCc-----------eEEEE-
Q 016265          283 IDYT---KDNFED----L--PEKFDVVYDAIGQ---CDRAVKAIKEGGTVVALTGAV-T-PPG-----------FRFVV-  336 (392)
Q Consensus       283 i~~~---~~~~~~----~--~~~~D~vid~~G~---~~~~~~~l~~~G~iv~~g~~~-~-~~~-----------~~~~~-  336 (392)
                      +|+.   +.++.+    .  .+++|+||||+|.   ++.++++++++|+++.+|... . +..           +.+.. 
T Consensus       245 i~~~~~~~~~~~~~v~~~~~g~g~Dvvid~~g~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~~i~g~  324 (380)
T 1vj0_A          245 LNRRETSVEERRKAIMDITHGRGADFILEATGDSRALLEGSELLRRGGFYSVAGVAVPQDPVPFKVYEWLVLKNATFKGI  324 (380)
T ss_dssp             EETTTSCHHHHHHHHHHHTTTSCEEEEEECSSCTTHHHHHHHHEEEEEEEEECCCCSCCCCEEECHHHHTTTTTCEEEEC
T ss_pred             EeccccCcchHHHHHHHHhCCCCCcEEEECCCCHHHHHHHHHHHhcCCEEEEEecCCCCCCeeEchHHHHHhCCeEEEEe
Confidence            9987   444322    2  2479999999983   689999999999999998654 2 211           11111 


Q ss_pred             -eecHHHHHHHHHHHHC--CCcccccCCCcccchhhHHHHHHHHHhCCCCeeEEEEeC
Q 016265          337 -TSNGEVLKKLNPYLES--GKVKPIIDPKGPFPFSQVVEAFSYIETNKATGKVVIHPI  391 (392)
Q Consensus       337 -~~~~~~~~~~~~~l~~--g~l~~~~~~t~~~~l~~~~~A~~~l~~~~~~gKvvl~~~  391 (392)
                       ....+.++++++++++  |++++.  ++++|+|+|+++||+.+++++.. |+||++.
T Consensus       325 ~~~~~~~~~~~~~l~~~~~g~l~~~--i~~~~~l~~~~~A~~~~~~~~~~-Kvvl~~~  379 (380)
T 1vj0_A          325 WVSDTSHFVKTVSITSRNYQLLSKL--ITHRLPLKEANKALELMESREAL-KVILYPE  379 (380)
T ss_dssp             CCCCHHHHHHHHHHHHTCHHHHGGG--CCEEEEGGGHHHHHHHHHHTSCS-CEEEECC
T ss_pred             ecCCHHHHHHHHHHHHhhcCCeeeE--EEEEEeHHHHHHHHHHHhcCCCc-eEEEEeC
Confidence             1246789999999999  998654  56899999999999999999888 9999875

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=4.5e-47  Score=373.31  Aligned_cols=298  Identities=20%  Similarity=0.283  Sum_probs=244.9

Q ss_pred             ceeEEEEcccCCcceEEEeccccCCCCC-CCe------EEEEEeEEecChHhHHhhcCCCCCCCCCCCCcCCCceeEEEE
Q 016265           83 EMKAWLYGEYGGVDVLKFDEKVTVPQVK-EDQ------VLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVV  155 (392)
Q Consensus        83 ~mka~v~~~~~~~~~l~~~~~~~~p~~~-~~e------VlV~v~~~~i~~~D~~~~~g~~~~~~~~~p~v~G~e~~G~V~  155 (392)
                      +|||+++++++.   ++++ +++.|+|+ ++|      |||||.++|||++|++.++|.++   ..+|.++|||++|+|+
T Consensus         2 ~Mka~~~~~~~~---l~~~-~~p~P~~~~~~e~~~~~eVlVkv~a~gi~~~D~~~~~g~~~---~~~p~v~GhE~~G~V~   74 (398)
T 1kol_A            2 GNRGVVYLGSGK---VEVQ-KIDYPKMQDPRGKKIEHGVILKVVSTNICGSDQHMVRGRTT---AQVGLVLGHEITGEVI   74 (398)
T ss_dssp             CEEEEEEEETTE---EEEE-EECCCCSBCTTSCBCSSCEEEEEEEEECCHHHHHHHTTCSC---CCTTCBCCCCEEEEEE
T ss_pred             ccEEEEEecCCc---eEEE-EecCCCCCCCCcccccceEEEEEEEEeechhhHHHHcCCCC---CCCCcccCcccEEEEE
Confidence            599999987763   7888 89999997 898      99999999999999999998753   3568999999999999


Q ss_pred             EeCCCCCCCCCCCEEEecccccc------------------------cCCC----CCCCcceeEEEecCC--ceeeCCCC
Q 016265          156 KVGTQVKEFKEGDEVYGDINEKA------------------------LEGP----KQFGSLAEYTAVEER--LLAPKPKN  205 (392)
Q Consensus       156 ~vG~~v~~~~vGdrV~~~~~~~~------------------------~~~~----~~~G~~a~~~~v~~~--~~~~iP~~  205 (392)
                      ++|++|++|++||||++.....+                        ..|.    ...|+|+||+++++.  +++++|++
T Consensus        75 ~vG~~v~~~~vGDrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~~~~~~~g~~~~~~~~G~~aey~~v~~~~~~~~~~P~~  154 (398)
T 1kol_A           75 EKGRDVENLQIGDLVSVPFNVACGRCRSCKEMHTGVCLTVNPARAGGAYGYVDMGDWTGGQAEYVLVPYADFNLLKLPDR  154 (398)
T ss_dssp             EECTTCCSCCTTCEEECCSEECCSSSHHHHTTCGGGCSSSCSSSSCEEBTCTTSCCBCCCSBSEEEESSHHHHCEECSCH
T ss_pred             EECCCCCcCCCCCEEEECCcCCCCCChHHhCcCcccCCCcccccccceeeeccCCCCCceeeeEEEecchhCeEEECCCC
Confidence            99999999999999986321000                        0111    246999999999987  89999999


Q ss_pred             CCHHh----HhccchhHHHHHHHHHhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCC-eEEEEeCCcccHHHHHhcCCc
Q 016265          206 LDFVQ----AAGLPLAIETAYEGLERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGA-SRVAATSSTRNLEFLKSLGAD  280 (392)
Q Consensus       206 l~~~~----aa~l~~~~~ta~~al~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~-~vv~~~~~~~~~~~~~~~G~~  280 (392)
                      +++++    ++++++++.|||++++++++++|++|||+| +|++|++++|+||.+ |+ +|++++.+++|+++++++|++
T Consensus       155 ~~~~~~~~~aa~l~~~~~ta~~al~~~~~~~g~~VlV~G-aG~vG~~aiqlAk~~-Ga~~Vi~~~~~~~~~~~a~~lGa~  232 (398)
T 1kol_A          155 DKAMEKIRDLTCLSDILPTGYHGAVTAGVGPGSTVYVAG-AGPVGLAAAASARLL-GAAVVIVGDLNPARLAHAKAQGFE  232 (398)
T ss_dssp             HHHHHTHHHHGGGGTHHHHHHHHHHHTTCCTTCEEEEEC-CSHHHHHHHHHHHHT-TCSEEEEEESCHHHHHHHHHTTCE
T ss_pred             cchhhhcccccccccHHHHHHHHHHHcCCCCCCEEEEEC-CcHHHHHHHHHHHHC-CCCeEEEEcCCHHHHHHHHHcCCc
Confidence            99988    788899999999999989999999999998 799999999999984 99 677888899999999999997


Q ss_pred             EEEeCCCCc-ccc----C--CCCccEEEecCcc------------------HHHHHHhcccCCeEEEEcCCC--CC----
Q 016265          281 LAIDYTKDN-FED----L--PEKFDVVYDAIGQ------------------CDRAVKAIKEGGTVVALTGAV--TP----  329 (392)
Q Consensus       281 ~vi~~~~~~-~~~----~--~~~~D~vid~~G~------------------~~~~~~~l~~~G~iv~~g~~~--~~----  329 (392)
                       ++|+.+.+ +.+    .  .+++|+||||+|.                  ++.++++++++|+++.+|...  .+    
T Consensus       233 -~i~~~~~~~~~~~v~~~t~g~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~  311 (398)
T 1kol_A          233 -IADLSLDTPLHEQIAALLGEPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPGLYVTEDPGAVD  311 (398)
T ss_dssp             -EEETTSSSCHHHHHHHHHSSSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECSCCCSCCTTCSS
T ss_pred             -EEccCCcchHHHHHHHHhCCCCCCEEEECCCCcccccccccccccchHHHHHHHHHHHhcCCEEEEeccccCCcccccc
Confidence             78886643 322    1  3479999999983                  579999999999999998641  10    


Q ss_pred             -------Cce----------EEEE--eecHHHHHHHHHHHHCCCcc-cccCCCcccchhhHHHHHHHHHhCCCCeeEEEE
Q 016265          330 -------PGF----------RFVV--TSNGEVLKKLNPYLESGKVK-PIIDPKGPFPFSQVVEAFSYIETNKATGKVVIH  389 (392)
Q Consensus       330 -------~~~----------~~~~--~~~~~~~~~~~~~l~~g~l~-~~~~~t~~~~l~~~~~A~~~l~~~~~~gKvvl~  389 (392)
                             ..+          .+..  ....+.++++++++.+|+++ +...++++|+|+|+++||+.+++++. ||+||+
T Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~g~l~~~~~~i~~~~~l~~~~~A~~~~~~~~~-gKvvi~  390 (398)
T 1kol_A          312 AAAKIGSLSIRFGLGWAKSHSFHTGQTPVMKYNRALMQAIMWDRINIAEVVGVQVISLDDAPRGYGEFDAGVP-KKFVID  390 (398)
T ss_dssp             HHHHTTCCCCCHHHHHHTTCEEEESSCCHHHHHHHHHHHHHTTSCCHHHHHTEEEECGGGHHHHHHHHHHTCS-CEEEEC
T ss_pred             cccccccccccHHHHhhcccEEEecccChHHHHHHHHHHHHcCCCCCccceeEEEEcHHHHHHHHHHHhCCCc-eEEEEE
Confidence                   111          1111  11346688999999999998 33345789999999999999999887 999998


Q ss_pred             eC
Q 016265          390 PI  391 (392)
Q Consensus       390 ~~  391 (392)
                      ++
T Consensus       391 ~~  392 (398)
T 1kol_A          391 PH  392 (398)
T ss_dssp             TT
T ss_pred             eC
Confidence            64

>1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A*

Probab=100.00  E-value=1.2e-47  Score=368.16  Aligned_cols=301  Identities=25%  Similarity=0.348  Sum_probs=246.0

Q ss_pred             CCcceeEEEEcccCCcceEEEeccccCCCCCCCeEEEEEeEEecChHhHHhhcCCCCCCCCCCCCcCCCceeEEEEEeCC
Q 016265           80 VPSEMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGT  159 (392)
Q Consensus        80 ~p~~mka~v~~~~~~~~~l~~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~~~p~v~G~e~~G~V~~vG~  159 (392)
                      |+.+|||+++++++.++.++++ +.+.|+|++|||+|||.++|||++|++.+.|.++. ...+|.++|||++|+|+++  
T Consensus         1 m~~~mka~~~~~~g~~~~l~~~-~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~-~~~~p~i~G~E~~G~V~~~--   76 (330)
T 1tt7_A            1 MSTLFQALQAEKNADDVSVHVK-TISTEDLPKDGVLIKVAYSGINYKDGLAGKAGGNI-VREYPLILGIDAAGTVVSS--   76 (330)
T ss_dssp             -CCEEEEEEECCGGGSCCCEEE-EEESSSSCSSSEEEEECCEEECHHHHHHTSTTCTT-CSSCSEECCSEEEEEEEEC--
T ss_pred             CCCcceEEEEecCCCCcceeEe-ecCCCCCCCCEEEEEEEEEecCHHHHhhhcCCCCC-cCCCCccccceEEEEEEEc--
Confidence            5678999999998754457888 89999999999999999999999999999987542 2357899999999999996  


Q ss_pred             CCCCCCCCCEEEecccccccCCCCCCCcceeEEEecCCceeeCCCCCCHHhHhccchhHHHHHHHH---HhcCCCCCC-e
Q 016265          160 QVKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGL---ERTGFSAGK-S  235 (392)
Q Consensus       160 ~v~~~~vGdrV~~~~~~~~~~~~~~~G~~a~~~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~al---~~~~~~~g~-~  235 (392)
                      ++++|++||||++....   .|...+|+|+||++++++.++++|+++++++||++++++.|||.++   .+.++++|+ +
T Consensus        77 ~v~~~~vGdrV~~~~~~---~g~~~~G~~aey~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~~~g~~~  153 (330)
T 1tt7_A           77 NDPRFAEGDEVIATSYE---LGVSRDGGLSEYASVPGDWLVPLPQNLSLKEAMVYGTAGFTAALSVHRLEQNGLSPEKGS  153 (330)
T ss_dssp             SSTTCCTTCEEEEESTT---BTTTBCCSSBSSEEECGGGEEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCC
T ss_pred             CCCCCCCCCEEEEcccc---cCCCCCccceeEEEecHHHeEECCCCCCHHHHhhccchHHHHHHHHHHHHhcCcCCCCce
Confidence            46889999999986421   2233469999999999999999999999999999999999999876   457899997 9


Q ss_pred             EEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCCc---cccC-CCCccEEEecCcc--HHH
Q 016265          236 ILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDN---FEDL-PEKFDVVYDAIGQ--CDR  309 (392)
Q Consensus       236 VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~---~~~~-~~~~D~vid~~G~--~~~  309 (392)
                      |||+|++|++|++++|+||.. |+++++++++++|+++++++|+++++|+++.+   ..+. .+++|++|||+|.  ++.
T Consensus       154 VlV~Ga~G~vG~~~~q~a~~~-Ga~vi~~~~~~~~~~~~~~lGa~~v~~~~~~~~~~~~~~~~~~~d~vid~~g~~~~~~  232 (330)
T 1tt7_A          154 VLVTGATGGVGGIAVSMLNKR-GYDVVASTGNREAADYLKQLGASEVISREDVYDGTLKALSKQQWQGAVDPVGGKQLAS  232 (330)
T ss_dssp             EEEESTTSHHHHHHHHHHHHH-TCCEEEEESSSSTHHHHHHHTCSEEEEHHHHCSSCCCSSCCCCEEEEEESCCTHHHHH
T ss_pred             EEEECCCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHcCCcEEEECCCchHHHHHHhhcCCccEEEECCcHHHHHH
Confidence            999998899999999999995 99999999999999999999999999875421   1222 3479999999994  688


Q ss_pred             HHHhcccCCeEEEEcCCCCC-----------CceEEEEe----ec----HHHHHHHHHHHHCCCcccccCCCcccchhhH
Q 016265          310 AVKAIKEGGTVVALTGAVTP-----------PGFRFVVT----SN----GEVLKKLNPYLESGKVKPIIDPKGPFPFSQV  370 (392)
Q Consensus       310 ~~~~l~~~G~iv~~g~~~~~-----------~~~~~~~~----~~----~~~~~~~~~~l~~g~l~~~~~~t~~~~l~~~  370 (392)
                      ++++++++|+++.+|.....           ..+.+...    ..    .+.++++.+++++|++++.  ++++|+|+|+
T Consensus       233 ~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~--i~~~~~l~~~  310 (330)
T 1tt7_A          233 LLSKIQYGGSVAVSGLTGGGEVPATVYPFILRGVSLLGIDSVYCPMDVRAAVWERMSSDLKPDQLLTI--VDREVSLEET  310 (330)
T ss_dssp             HHTTEEEEEEEEECCCSSCSCEEECSHHHHTSCCEEEECCSSSCCHHHHHHHHHHTTTTSCCSCSTTS--EEEEECSTTH
T ss_pred             HHHhhcCCCEEEEEecCCCCccCcchHHHHhcCeEEEEEeccccCHHHHHHHHHHHHHHHhcCCcccc--cceEEcHHHH
Confidence            99999999999999865321           11122111    11    2345666777778888764  4589999999


Q ss_pred             HHHHHHHHhCCCCeeEEEEe
Q 016265          371 VEAFSYIETNKATGKVVIHP  390 (392)
Q Consensus       371 ~~A~~~l~~~~~~gKvvl~~  390 (392)
                      ++||+.+++++..||+||++
T Consensus       311 ~~A~~~~~~~~~~gKvvi~~  330 (330)
T 1tt7_A          311 PGALKDILQNRIQGRVIVKL  330 (330)
T ss_dssp             HHHHHHTTTTCCSSEEEECC
T ss_pred             HHHHHHHHcCCCCCeEEEeC
Confidence            99999999988889999864

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=100.00  E-value=5.5e-47  Score=373.36  Aligned_cols=287  Identities=22%  Similarity=0.292  Sum_probs=236.2

Q ss_pred             eEEEeccccCCC-CCCCeEEEEEeEEecChHhHHhhcCCCC-----CCCCCCCCcCCCceeEEEEEeCCCC------CCC
Q 016265           97 VLKFDEKVTVPQ-VKEDQVLIKVVAAALNPVDGKRRQGKFK-----ATDSPLPTVPGYDVAGVVVKVGTQV------KEF  164 (392)
Q Consensus        97 ~l~~~~~~~~p~-~~~~eVlV~v~~~~i~~~D~~~~~g~~~-----~~~~~~p~v~G~e~~G~V~~vG~~v------~~~  164 (392)
                      .++++ +++.|+ |++|||||||.++|||++|++.+.|...     .....+|.++|||++|+|+++|++|      ++|
T Consensus        41 ~l~~~-~~~~P~~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~~~~~P~i~G~E~~G~V~~vG~~v~~~~~~~~~  119 (404)
T 3ip1_A           41 EVRVE-EVPEPRIEKPTEIIIKVKACGICGSDVHMAQTDEEGYILYPGLTGFPVTLGHEFSGVVVEAGPEAINRRTNKRF  119 (404)
T ss_dssp             EEEEE-EECCCCCCSTTEEEEEEEEEECCHHHHHHHCBCTTSBBSCCSCBCSSEECCCEEEEEEEEECTTCEETTTTEEC
T ss_pred             ceEEE-EcCCCCCCCcCEEEEEEeEeeeCHHHHHHhcCCCCccccccccCCCCcccCccceEEEEEECCCccccccCCCC
Confidence            48888 899999 9999999999999999999999987421     1124678999999999999999999      899


Q ss_pred             CCCCEEEecccc------------------cccCCCCCCCcceeEEEecCCceeeCCCCCC------HHhHhccchhHHH
Q 016265          165 KEGDEVYGDINE------------------KALEGPKQFGSLAEYTAVEERLLAPKPKNLD------FVQAAGLPLAIET  220 (392)
Q Consensus       165 ~vGdrV~~~~~~------------------~~~~~~~~~G~~a~~~~v~~~~~~~iP~~l~------~~~aa~l~~~~~t  220 (392)
                      ++||||++....                  ....|...+|+|+||++++++.++++|++++      +.++++++.++.|
T Consensus       120 ~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~g~~~~G~~aey~~v~~~~~~~iP~~~~~~~~~~~~~aa~l~~~~~t  199 (404)
T 3ip1_A          120 EIGEPVCAEEMLWCGHCRPCAEGFPNHCENLNELGFNVDGAFAEYVKVDAKYAWSLRELEGVYEGDRLFLAGSLVEPTSV  199 (404)
T ss_dssp             CTTCEEEECSEECCSCSHHHHTTCGGGCTTCEEBTTTBCCSSBSEEEEEGGGEEECGGGBTTBCTHHHHHHHHTHHHHHH
T ss_pred             CCCCEEEECCccCCCCCHHHHCcCcccCccccccCCCCCCCCcceEEechHHeEeccccccccccccchhHHhhhhHHHH
Confidence            999999975321                  1113445679999999999999999999886      4568888999999


Q ss_pred             HHHHHH-h-cCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCC-eEEEEeCCcccHHHHHhcCCcEEEeCCCCccccC----
Q 016265          221 AYEGLE-R-TGFSAGKSILVLNGSGGVGSLVIQLAKQVFGA-SRVAATSSTRNLEFLKSLGADLAIDYTKDNFEDL----  293 (392)
Q Consensus       221 a~~al~-~-~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~-~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~~~----  293 (392)
                      ||+++. . +++++|++|||+| +|++|++++|+||. .|+ +|++++.+++|+++++++|+++++|+.++++.+.    
T Consensus       200 a~~al~~~~~~~~~g~~VlV~G-aG~vG~~aiqlak~-~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~i~~~  277 (404)
T 3ip1_A          200 AYNAVIVRGGGIRPGDNVVILG-GGPIGLAAVAILKH-AGASKVILSEPSEVRRNLAKELGADHVIDPTKENFVEAVLDY  277 (404)
T ss_dssp             HHHHHTTTSCCCCTTCEEEEEC-CSHHHHHHHHHHHH-TTCSEEEEECSCHHHHHHHHHHTCSEEECTTTSCHHHHHHHH
T ss_pred             HHHHHHHhccCCCCCCEEEEEC-CCHHHHHHHHHHHH-cCCCEEEEECCCHHHHHHHHHcCCCEEEcCCCCCHHHHHHHH
Confidence            999995 3 4899999999999 59999999999998 499 7888888999999999999999999987765431    


Q ss_pred             --CCCccEEEecCccH----HHHHHhc----ccCCeEEEEcCCCCCCce----------EEEEe---ecHHHHHHHHHHH
Q 016265          294 --PEKFDVVYDAIGQC----DRAVKAI----KEGGTVVALTGAVTPPGF----------RFVVT---SNGEVLKKLNPYL  350 (392)
Q Consensus       294 --~~~~D~vid~~G~~----~~~~~~l----~~~G~iv~~g~~~~~~~~----------~~~~~---~~~~~~~~~~~~l  350 (392)
                        ++++|+||||+|..    +.+++++    +++|+++.+|.......+          .+...   .....++++++++
T Consensus       278 t~g~g~D~vid~~g~~~~~~~~~~~~l~~~~~~~G~iv~~G~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~ll  357 (404)
T 3ip1_A          278 TNGLGAKLFLEATGVPQLVWPQIEEVIWRARGINATVAIVARADAKIPLTGEVFQVRRAQIVGSQGHSGHGTFPRVISLM  357 (404)
T ss_dssp             TTTCCCSEEEECSSCHHHHHHHHHHHHHHCSCCCCEEEECSCCCSCEEECHHHHHHTTCEEEECCCCCSTTHHHHHHHHH
T ss_pred             hCCCCCCEEEECCCCcHHHHHHHHHHHHhccCCCcEEEEeCCCCCCCcccHHHHhccceEEEEecCCCchHHHHHHHHHH
Confidence              34799999999843    4666777    999999999876533221          11111   1256789999999


Q ss_pred             HCCCcccccCCCcccchhhHHHHHHHHHhCCCCeeEEEEeC
Q 016265          351 ESGKVKPIIDPKGPFPFSQVVEAFSYIETNKATGKVVIHPI  391 (392)
Q Consensus       351 ~~g~l~~~~~~t~~~~l~~~~~A~~~l~~~~~~gKvvl~~~  391 (392)
                      ++| +++...++++|+|+|+++||+.+.    .||+||+++
T Consensus       358 ~~g-l~~~~~i~~~~~l~~~~~A~~~~~----~GKvvl~~~  393 (404)
T 3ip1_A          358 ASG-MDMTKIISKTVSMEEIPEYIKRLQ----TDKSLVKVT  393 (404)
T ss_dssp             HTT-CCGGGGCCEEECGGGHHHHHHHTT----TCTTCSCEE
T ss_pred             HcC-CChhheEEEEeeHHHHHHHHHHHh----CCcEEEecC
Confidence            999 887767889999999999999986    578888764

>1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=3.4e-46  Score=357.77  Aligned_cols=298  Identities=24%  Similarity=0.358  Sum_probs=242.9

Q ss_pred             cceeEEEEcccCCcceEEEeccccCCCCCCCeEEEEEeEEecChHhHHhhcCCCCCCCCCCCCcCCCceeEEEEEeCCCC
Q 016265           82 SEMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQV  161 (392)
Q Consensus        82 ~~mka~v~~~~~~~~~l~~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~~~p~v~G~e~~G~V~~vG~~v  161 (392)
                      .+|||+++++++.+..++++ +.+.|+|++|||+|||.++|||++|++.+.|.++. ...+|.++|||++|+|+++  ++
T Consensus         2 ~~mka~~~~~~g~~~~l~~~-~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~-~~~~p~v~G~E~~G~V~~~--~v   77 (328)
T 1xa0_A            2 SAFQAFVVNKTETEFTAGVQ-TISMDDLPEGDVLVRVHYSSVNYKDGLASIPDGKI-VKTYPFVPGIDLAGVVVSS--QH   77 (328)
T ss_dssp             CEEEEEEEEEETTEEEEEEE-EEEGGGSCSCSEEEEEEEEECCHHHHHHTSGGGSS-CCSSSBCCCSEEEEEEEEC--CS
T ss_pred             CcceEEEEecCCCcceeEEE-eccCCCCCCCeEEEEEEEEecCHHHHHhhcCCCCC-CCCCCcccCcceEEEEEec--CC
Confidence            36999999998865568888 89999999999999999999999999999886542 2357899999999999995  57


Q ss_pred             CCCCCCCEEEecccccccCCCCCCCcceeEEEecCCceeeCCCCCCHHhHhccchhHHHHHHHH---HhcCCCCCC-eEE
Q 016265          162 KEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGL---ERTGFSAGK-SIL  237 (392)
Q Consensus       162 ~~~~vGdrV~~~~~~~~~~~~~~~G~~a~~~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~al---~~~~~~~g~-~Vl  237 (392)
                      ++|++||||++...   ..|...+|+|+||++++++.++++|+++++++|+++++++.|||.++   .++++++|+ +||
T Consensus        78 ~~~~vGdrV~~~~~---~~g~~~~G~~aey~~v~~~~~~~~P~~l~~~~aa~~~~~~~ta~~~l~~~~~~~~~~g~~~Vl  154 (328)
T 1xa0_A           78 PRFREGDEVIATGY---EIGVTHFGGYSEYARLHGEWLVPLPKGLTLKEAMAIGTAGFTAALSIHRLEEHGLTPERGPVL  154 (328)
T ss_dssp             SSCCTTCEEEEEST---TBTTTBCCSSBSEEEECGGGCEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCCEE
T ss_pred             CCCCCCCEEEEccc---cCCCCCCccceeEEEechHHeEECCCCCCHHHhhhhhhhHHHHHHHHHHHhhcCCCCCCceEE
Confidence            89999999998532   11223469999999999999999999999999999999999999876   457899997 999


Q ss_pred             EEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCCc---cccC-CCCccEEEecCc--cHHHHH
Q 016265          238 VLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDN---FEDL-PEKFDVVYDAIG--QCDRAV  311 (392)
Q Consensus       238 I~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~---~~~~-~~~~D~vid~~G--~~~~~~  311 (392)
                      |+|++|++|++++|+||. .|+++++++++++|+++++++|+++++|+.+.+   ..+. .+++|++|||+|  .++.++
T Consensus       155 V~Ga~G~vG~~~~q~a~~-~Ga~vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~~~~~~d~vid~~g~~~~~~~~  233 (328)
T 1xa0_A          155 VTGATGGVGSLAVSMLAK-RGYTVEASTGKAAEHDYLRVLGAKEVLAREDVMAERIRPLDKQRWAAAVDPVGGRTLATVL  233 (328)
T ss_dssp             ESSTTSHHHHHHHHHHHH-TTCCEEEEESCTTCHHHHHHTTCSEEEECC---------CCSCCEEEEEECSTTTTHHHHH
T ss_pred             EecCCCHHHHHHHHHHHH-CCCEEEEEECCHHHHHHHHHcCCcEEEecCCcHHHHHHHhcCCcccEEEECCcHHHHHHHH
Confidence            999889999999999998 499999999999999999999999999987542   1122 347999999998  478999


Q ss_pred             HhcccCCeEEEEcCCCC-CC----------ceEEEEe----ec----HHHHHHHHHHHHCCCcccccCCCcccchhhHHH
Q 016265          312 KAIKEGGTVVALTGAVT-PP----------GFRFVVT----SN----GEVLKKLNPYLESGKVKPIIDPKGPFPFSQVVE  372 (392)
Q Consensus       312 ~~l~~~G~iv~~g~~~~-~~----------~~~~~~~----~~----~~~~~~~~~~l~~g~l~~~~~~t~~~~l~~~~~  372 (392)
                      ++++++|+++.+|.... ..          .+.+...    ..    .+.++++.+++++| +++.   +++|+|+|+++
T Consensus       234 ~~l~~~G~~v~~G~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~g-l~~~---~~~~~l~~~~~  309 (328)
T 1xa0_A          234 SRMRYGGAVAVSGLTGGAEVPTTVHPFILRGVSLLGIDSVYCPMDLRLRIWERLAGDLKPD-LERI---AQEISLAELPQ  309 (328)
T ss_dssp             HTEEEEEEEEECSCCSSSCCCCCSHHHHHTTCEEEECCSSSCCHHHHHHHHHHHHTTTCCC-HHHH---EEEEEGGGHHH
T ss_pred             HhhccCCEEEEEeecCCCCCCCchhhhhhcCceEEEEecccCCHHHHHHHHHHHHHHHHcC-Ccee---eeEeCHHHHHH
Confidence            99999999999986431 11          1122211    11    23456666777777 6653   48999999999


Q ss_pred             HHHHHHhCCCCeeEEEEeC
Q 016265          373 AFSYIETNKATGKVVIHPI  391 (392)
Q Consensus       373 A~~~l~~~~~~gKvvl~~~  391 (392)
                      ||+.+++++..||+||+++
T Consensus       310 A~~~~~~~~~~gKvvv~~~  328 (328)
T 1xa0_A          310 ALKRILRGELRGRTVVRLA  328 (328)
T ss_dssp             HHHHHHHTCCCSEEEEECC
T ss_pred             HHHHHHcCCCCCeEEEEeC
Confidence            9999999988899999874

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=100.00  E-value=1.5e-45  Score=354.49  Aligned_cols=288  Identities=23%  Similarity=0.278  Sum_probs=243.2

Q ss_pred             cceeEEEEcc--cC--CcceEEEeccccCCCCCCCeEEEEEeEEecChHhHHhhcCCCCCCCCCCCCcCCCc----eeEE
Q 016265           82 SEMKAWLYGE--YG--GVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYD----VAGV  153 (392)
Q Consensus        82 ~~mka~v~~~--~~--~~~~l~~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~~~p~v~G~e----~~G~  153 (392)
                      .+||||++++  +|  .++.++++ ++|.|+|++|||||||.++|||++|++.+.+...   ..+|.++|||    ++|+
T Consensus         6 ~~mka~v~~~~~~g~~~~~~l~~~-~~~~P~~~~~eVlVkv~a~gi~~~d~~~~~~~~~---~~~p~~~G~e~g~~~~G~   81 (336)
T 4b7c_A            6 QINRQYQLAQRPSGLPGRDTFSFV-ETPLGEPAEGQILVKNEYLSLDPAMRGWMNDARS---YIPPVGIGEVMRALGVGK   81 (336)
T ss_dssp             CEEEEEEECSCCSSSCCTTSEEEE-EEECCCCCTTCEEEEEEEEECCTHHHHHHSCSCC---SSCCCCTTSBCCCEEEEE
T ss_pred             ccccEEEEEecCCCCCCCCceEEE-eccCCCCCCCEEEEEEEEEEeCHHHHhhhhcccc---cCCCCCCCcccCCceEEE
Confidence            5699999986  23  34668998 8999999999999999999999999998876432   2356677777    7999


Q ss_pred             EEEeCCCCCCCCCCCEEEecccccccCCCCCCCcceeEEEecCCceeeCCCCCCHHhH--hccchhHHHHHHHH-HhcCC
Q 016265          154 VVKVGTQVKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQA--AGLPLAIETAYEGL-ERTGF  230 (392)
Q Consensus       154 V~~vG~~v~~~~vGdrV~~~~~~~~~~~~~~~G~~a~~~~v~~~~~~~iP~~l~~~~a--a~l~~~~~ta~~al-~~~~~  230 (392)
                      |++.  +|++|++||||++            .|+|+||++++++.++++|+++++.++  +++++++.|||+++ +.+++
T Consensus        82 V~~~--~v~~~~vGdrV~~------------~G~~aey~~v~~~~~~~~P~~~~~~~~a~a~l~~~~~tA~~al~~~~~~  147 (336)
T 4b7c_A           82 VLVS--KHPGFQAGDYVNG------------ALGVQDYFIGEPKGFYKVDPSRAPLPRYLSALGMTGMTAYFALLDVGQP  147 (336)
T ss_dssp             EEEE--CSTTCCTTCEEEE------------ECCSBSEEEECCTTCEEECTTTSCGGGGGTTTSHHHHHHHHHHHHTTCC
T ss_pred             EEec--CCCCCCCCCEEec------------cCCceEEEEechHHeEEcCCCCCchHHHhhhcccHHHHHHHHHHHhcCC
Confidence            9994  5899999999997            389999999999999999999987776  67899999999999 78899


Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHH-HhcCCcEEEeCCCCcccc-----CCCCccEEEecC
Q 016265          231 SAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFL-KSLGADLAIDYTKDNFED-----LPEKFDVVYDAI  304 (392)
Q Consensus       231 ~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~-~~~G~~~vi~~~~~~~~~-----~~~~~D~vid~~  304 (392)
                      ++|++|||+|++|++|++++|+|+. .|++|+++++++++++.+ +++|+++++|+.+.++.+     ..+++|++|||+
T Consensus       148 ~~g~~vlI~Ga~g~iG~~~~~~a~~-~Ga~Vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~  226 (336)
T 4b7c_A          148 KNGETVVISGAAGAVGSVAGQIARL-KGCRVVGIAGGAEKCRFLVEELGFDGAIDYKNEDLAAGLKRECPKGIDVFFDNV  226 (336)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHH-TTCEEEEEESSHHHHHHHHHTTCCSEEEETTTSCHHHHHHHHCTTCEEEEEESS
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHHcCCCEEEECCCHHHHHHHHHhcCCCceEEEECC
Confidence            9999999999889999999999998 599999999999999999 899999999998766533     245799999999


Q ss_pred             c--cHHHHHHhcccCCeEEEEcCCC-----C----CC--------ceEEEEee-------cHHHHHHHHHHHHCCCcccc
Q 016265          305 G--QCDRAVKAIKEGGTVVALTGAV-----T----PP--------GFRFVVTS-------NGEVLKKLNPYLESGKVKPI  358 (392)
Q Consensus       305 G--~~~~~~~~l~~~G~iv~~g~~~-----~----~~--------~~~~~~~~-------~~~~~~~~~~~l~~g~l~~~  358 (392)
                      |  .++.++++++++|+++.+|...     .    +.        .+.+....       ..+.++++++++++|++++.
T Consensus       227 g~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~l~~~g~l~~~  306 (336)
T 4b7c_A          227 GGEILDTVLTRIAFKARIVLCGAISQYNNKEAVRGPANYLSLLVNRARMEGMVVMDYAQRFPEGLKEMATWLAEGKLQSR  306 (336)
T ss_dssp             CHHHHHHHHTTEEEEEEEEECCCGGGGC------CCTTTTHHHHTTCEEEECCGGGGGGGHHHHHHHHHHHHHTTSSCCC
T ss_pred             CcchHHHHHHHHhhCCEEEEEeecccccCCcccccchhHHHHHhCCcEEEEEEhhhhhhhhHHHHHHHHHHHHCCCcccc
Confidence            9  4689999999999999997543     1    11        11221111       14778999999999999987


Q ss_pred             cCCCcccchhhHHHHHHHHHhCCCCeeEEEEe
Q 016265          359 IDPKGPFPFSQVVEAFSYIETNKATGKVVIHP  390 (392)
Q Consensus       359 ~~~t~~~~l~~~~~A~~~l~~~~~~gKvvl~~  390 (392)
                      ..  ..|+++|+++||+.+++++..||+||++
T Consensus       307 ~~--~~~~l~~~~~A~~~~~~~~~~gKvvi~~  336 (336)
T 4b7c_A          307 ED--IVEGLETFPETLLKLFSGENFGKLVLKV  336 (336)
T ss_dssp             EE--EEECGGGHHHHHHHHHTTCCCSEEEEEC
T ss_pred             ee--eecCHHHHHHHHHHHHcCCCCceEEEeC
Confidence            54  3589999999999999999999999974

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*

Probab=100.00  E-value=3.5e-46  Score=361.81  Aligned_cols=291  Identities=22%  Similarity=0.222  Sum_probs=240.3

Q ss_pred             eeEEEEcccCCcceEEEeccccCCCCCCCeEEEEEeEEecChHhHHhhcCCCCCCCCCC---CCcCCCceeEEEEEeCCC
Q 016265           84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPL---PTVPGYDVAGVVVKVGTQ  160 (392)
Q Consensus        84 mka~v~~~~~~~~~l~~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~~~---p~v~G~e~~G~V~~vG~~  160 (392)
                      |||+++++++..  ++++ ++|.|+|++|||||||.++|||++|++.+.|.++.  ..+   |.++|||++| |+++|++
T Consensus         1 MkA~~~~~~~~~--l~~~-~~p~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~--~~~~~~p~v~G~E~~G-V~~vG~~   74 (357)
T 2b5w_A            1 MKAIAVKRGEDR--PVVI-EKPRPEPESGEALVRTLRVGVCGTDHEVIAGGHGG--FPEGEDHLVLGHEAVG-VVVDPND   74 (357)
T ss_dssp             CEEEEEETTCSS--CEEE-ECCCCCCCTTEEEEEEEEEEECHHHHHHHHSCSTT--SCTTCSEEECCSEEEE-EEEECTT
T ss_pred             CeEEEEeCCCCc--eEEE-ECCCCCCCcCEEEEEEeEEeechhcHHHHcCCCCC--CCCCCCCcccCceeEE-EEEECCC
Confidence            799999988763  6777 89999999999999999999999999999987642  345   8899999999 9999999


Q ss_pred             CCCCCCCCEEEeccccc--c------c------------C--CC-CCCCcceeEEEecCCceeeCCCCCCHHhHhccchh
Q 016265          161 VKEFKEGDEVYGDINEK--A------L------------E--GP-KQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLA  217 (392)
Q Consensus       161 v~~~~vGdrV~~~~~~~--~------~------------~--~~-~~~G~~a~~~~v~~~~~~~iP~~l~~~~aa~l~~~  217 (392)
                       ++|++||||++.....  +      .            .  |. ..+|+|+||++++++.++++|++++ ++ |+++.+
T Consensus        75 -~~~~vGdrV~~~~~~~~~cg~C~~C~~g~~~~C~~~~~~~~g~~~~~G~~aey~~v~~~~~~~iP~~~~-~~-aal~~~  151 (357)
T 2b5w_A           75 -TELEEGDIVVPTVRRPPASGTNEYFERDQPDMAPDGMYFERGIVGAHGYMSEFFTSPEKYLVRIPRSQA-EL-GFLIEP  151 (357)
T ss_dssp             -SSCCTTCEEEECSEECCTTCCCHHHHTTCGGGCCTTSCEEETTBEECCSCBSEEEEEGGGEEECCGGGS-TT-GGGHHH
T ss_pred             -CCCCCCCEEEECCcCCCCCCCChHHhCcCcccCCCCcccccCccCCCcceeeEEEEchHHeEECCCCcc-hh-hhhhch
Confidence             9999999999863111  0      0            0  21 2369999999999999999999999 54 557889


Q ss_pred             HHHHHHHHHhcCCCCC------CeEEEEcCCCcHHHHH-HHHH-HHhcCCe-EEEEeCCcc---cHHHHHhcCCcEEEeC
Q 016265          218 IETAYEGLERTGFSAG------KSILVLNGSGGVGSLV-IQLA-KQVFGAS-RVAATSSTR---NLEFLKSLGADLAIDY  285 (392)
Q Consensus       218 ~~ta~~al~~~~~~~g------~~VlI~Ga~G~vG~~a-iqla-k~~~G~~-vv~~~~~~~---~~~~~~~~G~~~vi~~  285 (392)
                      +.|||++++++++++|      ++|||+|+ |++|+++ +|+| |. .|++ |++++++++   |+++++++|++++ |+
T Consensus       152 ~~ta~~al~~~~~~~g~~~~~~~~VlV~Ga-G~vG~~a~iqla~k~-~Ga~~Vi~~~~~~~~~~~~~~~~~lGa~~v-~~  228 (357)
T 2b5w_A          152 ISITEKALEHAYASRSAFDWDPSSAFVLGN-GSLGLLTLAMLKVDD-KGYENLYCLGRRDRPDPTIDIIEELDATYV-DS  228 (357)
T ss_dssp             HHHHHHHHHHHHHTTTTSCCCCCEEEEECC-SHHHHHHHHHHHHCT-TCCCEEEEEECCCSSCHHHHHHHHTTCEEE-ET
T ss_pred             HHHHHHHHHhcCCCCCcccCCCCEEEEECC-CHHHHHHHHHHHHHH-cCCcEEEEEeCCcccHHHHHHHHHcCCccc-CC
Confidence            9999999988889999      99999996 9999999 9999 98 5997 888898888   9999999999999 98


Q ss_pred             CCCccccC---CCCccEEEecCcc---HHHHHHhcccCCeEEEEcCCC-CCCce--------------EEEE--eecHHH
Q 016265          286 TKDNFEDL---PEKFDVVYDAIGQ---CDRAVKAIKEGGTVVALTGAV-TPPGF--------------RFVV--TSNGEV  342 (392)
Q Consensus       286 ~~~~~~~~---~~~~D~vid~~G~---~~~~~~~l~~~G~iv~~g~~~-~~~~~--------------~~~~--~~~~~~  342 (392)
                      +++++.++   .+++|+||||+|.   ++.++++++++|+++.+|... .+..+              .+..  ....+.
T Consensus       229 ~~~~~~~i~~~~gg~Dvvid~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~  308 (357)
T 2b5w_A          229 RQTPVEDVPDVYEQMDFIYEATGFPKHAIQSVQALAPNGVGALLGVPSDWAFEVDAGAFHREMVLHNKALVGSVNSHVEH  308 (357)
T ss_dssp             TTSCGGGHHHHSCCEEEEEECSCCHHHHHHHHHHEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHTTCEEEECCCCCHHH
T ss_pred             CccCHHHHHHhCCCCCEEEECCCChHHHHHHHHHHhcCCEEEEEeCCCCCCceecHHHHhHHHHhCCeEEEEeccCCHHH
Confidence            87665432   2389999999984   589999999999999998654 22111              1111  124678


Q ss_pred             HHHHHHHHHCC--Cc-ccccCCCcccchhhHHHHHHHHHhCCCCeeEEEEeC
Q 016265          343 LKKLNPYLESG--KV-KPIIDPKGPFPFSQVVEAFSYIETNKATGKVVIHPI  391 (392)
Q Consensus       343 ~~~~~~~l~~g--~l-~~~~~~t~~~~l~~~~~A~~~l~~~~~~gKvvl~~~  391 (392)
                      ++++++++++|  ++ ++.  ++++|+|+|+++||+.+   +..||+|+++.
T Consensus       309 ~~~~~~l~~~g~~~~~~~~--i~~~~~l~~~~~A~~~~---~~~gKvvi~~~  355 (357)
T 2b5w_A          309 FEAATVTFTKLPKWFLEDL--VTGVHPLSEFEAAFDDD---DTTIKTAIEFS  355 (357)
T ss_dssp             HHHHHHHHHHSCHHHHHHH--EEEEEEGGGGGGGGCCS---TTCCEEEEECC
T ss_pred             HHHHHHHHHhCchhhhhhh--cceeecHHHHHHHHHHh---CCCceEEEEec
Confidence            99999999999  84 544  46899999999999988   34689999874

>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A*

Probab=100.00  E-value=6.8e-45  Score=352.74  Aligned_cols=294  Identities=20%  Similarity=0.282  Sum_probs=245.0

Q ss_pred             CCCcceeEEEE-ccc---CCc--ceEEEeccccCCCC-CCCeEEEEEeEEecChHhHHhhcC----CCCCCCCCCCCcCC
Q 016265           79 TVPSEMKAWLY-GEY---GGV--DVLKFDEKVTVPQV-KEDQVLIKVVAAALNPVDGKRRQG----KFKATDSPLPTVPG  147 (392)
Q Consensus        79 ~~p~~mka~v~-~~~---~~~--~~l~~~~~~~~p~~-~~~eVlV~v~~~~i~~~D~~~~~g----~~~~~~~~~p~v~G  147 (392)
                      .+|.+|||+++ +++   |.+  +.++++ +++.|+| ++|||+|||.++|||++|++.+.+    .++ ....+|.++|
T Consensus         4 ~~~~~mka~v~~~~~~~~g~p~~~~l~~~-~~~~P~~~~~~eVlVkv~a~gi~~~D~~~~~~~~g~~~~-~~~~~p~v~G   81 (357)
T 2zb4_A            4 AAAMIVQRVVLNSRPGKNGNPVAENFRME-EVYLPDNINEGQVQVRTLYLSVDPYMRCRMNEDTGTDYI-TPWQLSQVVD   81 (357)
T ss_dssp             --CCEEEEEEECCCCCTTSCCCGGGEEEE-EEECCSCCCTTEEEEEEEEEECCTTHHHHTSSSCSSSSS-CCCCBTSBCE
T ss_pred             cccccceEEEEeccCCCCCCCCcCceEEE-eecCCCCCCCCeEEEEEEEEecCHHHHhhcccccccccc-CCCCCCcccc
Confidence            35678999999 565   544  668998 8999999 999999999999999999988776    221 1245788999


Q ss_pred             CceeEEEEEeCCCCCCCCCCCEEEecccccccCCCCCCCcceeEEEecCCceeeCCCCC-----CHHhHhccchhHHHHH
Q 016265          148 YDVAGVVVKVGTQVKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNL-----DFVQAAGLPLAIETAY  222 (392)
Q Consensus       148 ~e~~G~V~~vG~~v~~~~vGdrV~~~~~~~~~~~~~~~G~~a~~~~v~~~~~~~iP~~l-----~~~~aa~l~~~~~ta~  222 (392)
                      ||++|+|++  ++|++|++||||++.           .|+|+||++++++.++++|+++     +++ ++++++++.|||
T Consensus        82 ~E~~G~V~~--~~v~~~~vGdrV~~~-----------~G~~aey~~v~~~~~~~iP~~~~~~~~~~~-~a~l~~~~~ta~  147 (357)
T 2zb4_A           82 GGGIGIIEE--SKHTNLTKGDFVTSF-----------YWPWQTKVILDGNSLEKVDPQLVDGHLSYF-LGAIGMPGLTSL  147 (357)
T ss_dssp             EEEEEEEEE--ECSTTCCTTCEEEEE-----------EEESBSEEEEEGGGCEECCGGGGTTCGGGG-GTTTSHHHHHHH
T ss_pred             ccEEEEEEe--cCCCCCCCCCEEEec-----------CCCcEEEEEEchHHceecCcccccCchhHH-HHhcccHHHHHH
Confidence            999999999  889999999999985           3899999999999999999999     555 677899999999


Q ss_pred             HHH-HhcCCCCC--CeEEEEcCCCcHHHHHHHHHHHhcCC-eEEEEeCCcccHHHHHh-cCCcEEEeCCCCcccc-----
Q 016265          223 EGL-ERTGFSAG--KSILVLNGSGGVGSLVIQLAKQVFGA-SRVAATSSTRNLEFLKS-LGADLAIDYTKDNFED-----  292 (392)
Q Consensus       223 ~al-~~~~~~~g--~~VlI~Ga~G~vG~~aiqlak~~~G~-~vv~~~~~~~~~~~~~~-~G~~~vi~~~~~~~~~-----  292 (392)
                      +++ +.+++++|  ++|||+|++|++|++++|+|+. .|+ +|+++++++++++.+++ +|+++++|+.+.++.+     
T Consensus       148 ~al~~~~~~~~g~~~~vlI~GasggiG~~~~~~a~~-~Ga~~Vi~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~  226 (357)
T 2zb4_A          148 IGIQEKGHITAGSNKTMVVSGAAGACGSVAGQIGHF-LGCSRVVGICGTHEKCILLTSELGFDAAINYKKDNVAEQLRES  226 (357)
T ss_dssp             HHHHHHSCCCTTSCCEEEESSTTBHHHHHHHHHHHH-TTCSEEEEEESCHHHHHHHHHTSCCSEEEETTTSCHHHHHHHH
T ss_pred             HHHHHhcCCCCCCccEEEEECCCcHHHHHHHHHHHH-CCCCeEEEEeCCHHHHHHHHHHcCCceEEecCchHHHHHHHHh
Confidence            999 67899999  9999999889999999999998 599 99999999999999886 9999999987765432     


Q ss_pred             CCCCccEEEecCc--cHHHHHHhcccCCeEEEEcCCCC-----CC---------------ceEEEEee-------cHHHH
Q 016265          293 LPEKFDVVYDAIG--QCDRAVKAIKEGGTVVALTGAVT-----PP---------------GFRFVVTS-------NGEVL  343 (392)
Q Consensus       293 ~~~~~D~vid~~G--~~~~~~~~l~~~G~iv~~g~~~~-----~~---------------~~~~~~~~-------~~~~~  343 (392)
                      ..+++|++|||+|  .++.++++++++|+++.+|....     +.               .+.+....       ..+.+
T Consensus       227 ~~~~~d~vi~~~G~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~  306 (357)
T 2zb4_A          227 CPAGVDVYFDNVGGNISDTVISQMNENSHIILCGQISQYNKDVPYPPPLSPAIEAIQKERNITRERFLVLNYKDKFEPGI  306 (357)
T ss_dssp             CTTCEEEEEESCCHHHHHHHHHTEEEEEEEEECCCGGGTTSCCCSSCCCCHHHHHHHHHHTCEEEECCGGGGGGGHHHHH
T ss_pred             cCCCCCEEEECCCHHHHHHHHHHhccCcEEEEECCccccccCccccccchhhhhhhhhcceeEEEEeehhhhhHHHHHHH
Confidence            1237999999999  46899999999999999975421     10               11111111       15678


Q ss_pred             HHHHHHHHCCCcccccCCCcccchhhHHHHHHHHHhCCCCeeEEEEeC
Q 016265          344 KKLNPYLESGKVKPIIDPKGPFPFSQVVEAFSYIETNKATGKVVIHPI  391 (392)
Q Consensus       344 ~~~~~~l~~g~l~~~~~~t~~~~l~~~~~A~~~l~~~~~~gKvvl~~~  391 (392)
                      +++++++++|++++...  ..|+|+++++||+.+++++..||+|+++.
T Consensus       307 ~~~~~l~~~g~l~~~~~--~~~~l~~~~~A~~~~~~~~~~gKvvi~~~  352 (357)
T 2zb4_A          307 LQLSQWFKEGKLKIKET--VINGLENMGAAFQSMMTGGNIGKQIVCIS  352 (357)
T ss_dssp             HHHHHHHHTTCCCCCEE--EEECGGGHHHHHHHHHTTCCSBEEEEECC
T ss_pred             HHHHHHHHcCCCcCccc--eecCHHHHHHHHHHHHcCCCCceEEEEEe
Confidence            99999999999988754  45999999999999999988899999875

>3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE NDP; 1.70A {Ralstonia eutropha}

Probab=100.00  E-value=1.2e-45  Score=360.76  Aligned_cols=293  Identities=18%  Similarity=0.190  Sum_probs=237.3

Q ss_pred             CcceeEEEEcccCCcceEEEeccccCCCCCCCeEEEEEeEEecChHhHHhhcCCCCC-----------------------
Q 016265           81 PSEMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKA-----------------------  137 (392)
Q Consensus        81 p~~mka~v~~~~~~~~~l~~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~-----------------------  137 (392)
                      +.+|||+++...  ...++++ +++.|+|++|||||||.++|||++|++.+.|.++.                       
T Consensus         5 ~~~mka~v~~~~--~~~l~~~-~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~g~~~~p~~~~~~p~~~~   81 (379)
T 3iup_A            5 ALQLRSRIKSSG--ELELSLD-SIDTPHPGPDEVLIRIEASPLNPSDLGLLFGAADMSTAKASGTAERPIVTARVPEGAM   81 (379)
T ss_dssp             EEEEEEEECTTS--EEEEEEE-EEECCCCCTTEEEEEEEEEECCHHHHHHHHTTCEEEEEEEEECSSSEEEEEECCHHHH
T ss_pred             hhhHHHHHhcCC--CCceEEE-eccCCCCCCCEEEEEEEEEecCHHHHHHhcCCccccccccccccccccccccCccccc
Confidence            356999988532  2348888 89999999999999999999999999999886310                       


Q ss_pred             ----CCCCCCCcCCCceeEEEEEeCCCC-CCCCCCCEEEecccccccCCCCCCCcceeEEEecCCceeeCCCCCCHHhHh
Q 016265          138 ----TDSPLPTVPGYDVAGVVVKVGTQV-KEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAA  212 (392)
Q Consensus       138 ----~~~~~p~v~G~e~~G~V~~vG~~v-~~~~vGdrV~~~~~~~~~~~~~~~G~~a~~~~v~~~~~~~iP~~l~~~~aa  212 (392)
                          ....+|.++|||++|+|+++|++| ++|++||||++..          +|+|+||++++++.++++|+++++++|+
T Consensus        82 ~~~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~~vGdrV~~~~----------~G~~aey~~v~~~~~~~iP~~~~~~~aa  151 (379)
T 3iup_A           82 RSMAGRLDASMPVGNEGAGVVVEAGSSPAAQALMGKTVAAIG----------GAMYSQYRCIPADQCLVLPEGATPADGA  151 (379)
T ss_dssp             HHHGGGTTEEEECCSCEEEEEEEECSSHHHHTTTTCEEEECC----------SCCSBSEEEEEGGGEEECCTTCCHHHHT
T ss_pred             cccccccCCCccceeeeEEEEEEeCCCcccCCCCCCEEEecC----------CCcceeEEEeCHHHeEECCCCCCHHHHH
Confidence                023468999999999999999999 8999999999864          4999999999999999999999999999


Q ss_pred             ccchhHHHHHHHHHhcCCCCCCeEEEEc-CCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCCccc
Q 016265          213 GLPLAIETAYEGLERTGFSAGKSILVLN-GSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFE  291 (392)
Q Consensus       213 ~l~~~~~ta~~al~~~~~~~g~~VlI~G-a~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~  291 (392)
                      ++++..+|||++++... ++|++|||+| |+|++|++++|+||.+ |++|++++++++|+++++++|+++++|+++.++.
T Consensus       152 ~l~~~~~ta~~~~~~~~-~~g~~vlV~gag~G~vG~~a~q~a~~~-Ga~Vi~~~~~~~~~~~~~~lGa~~~~~~~~~~~~  229 (379)
T 3iup_A          152 SSFVNPLTALGMVETMR-LEGHSALVHTAAASNLGQMLNQICLKD-GIKLVNIVRKQEQADLLKAQGAVHVCNAASPTFM  229 (379)
T ss_dssp             TSSHHHHHHHHHHHHHH-HTTCSCEEESSTTSHHHHHHHHHHHHH-TCCEEEEESSHHHHHHHHHTTCSCEEETTSTTHH
T ss_pred             hhhhhHHHHHHHHHHhc-cCCCEEEEECCCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHhCCCcEEEeCCChHHH
Confidence            99999999999887766 8999999996 7999999999999995 9999999999999999999999999999887764


Q ss_pred             cC------CCCccEEEecCcc---HHHHHHhcc-----cC-----------CeEEEEcCCCC---------CCceEEEEe
Q 016265          292 DL------PEKFDVVYDAIGQ---CDRAVKAIK-----EG-----------GTVVALTGAVT---------PPGFRFVVT  337 (392)
Q Consensus       292 ~~------~~~~D~vid~~G~---~~~~~~~l~-----~~-----------G~iv~~g~~~~---------~~~~~~~~~  337 (392)
                      +.      .+++|++|||+|.   .+.++++++     ++           |+++.+|....         ...+.+...
T Consensus       230 ~~v~~~t~~~g~d~v~d~~g~~~~~~~~~~~l~~~~~r~~G~~~~~G~~~~g~iv~~G~~~~~~~~~~~~~~~~~~i~g~  309 (379)
T 3iup_A          230 QDLTEALVSTGATIAFDATGGGKLGGQILTCMEAALNKSAREYSRYGSTTHKQVYLYGGLDTSPTEFNRNFGMAWGMGGW  309 (379)
T ss_dssp             HHHHHHHHHHCCCEEEESCEEESHHHHHHHHHHHHHHTTCCSCCTTCCCSCEEEEECCCSEEEEEEECCCSCSCEEEEEC
T ss_pred             HHHHHHhcCCCceEEEECCCchhhHHHHHHhcchhhhccccceeecccccCceEEEecCCCCCccccccccccceEEEEE
Confidence            42      2479999999983   477788875     44           55555543220         011111111


Q ss_pred             e--------cH----HHHHHHHHHHHCCCcccccCCCcccchhhH--HHHHHHHHhCCCCeeEEEEeC
Q 016265          338 S--------NG----EVLKKLNPYLESGKVKPIIDPKGPFPFSQV--VEAFSYIETNKATGKVVIHPI  391 (392)
Q Consensus       338 ~--------~~----~~~~~~~~~l~~g~l~~~~~~t~~~~l~~~--~~A~~~l~~~~~~gKvvl~~~  391 (392)
                      .        ..    +.++++++++.+ .+++  .++++|+|+|+  ++||+.+.+++..||+||+|+
T Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~--~i~~~~~l~~~~~~~A~~~l~~~~~~gKvVv~~~  374 (379)
T 3iup_A          310 LLFPFLQKIGRERANALKQRVVAELKT-TFAS--HYSKEISLAEVLDLDMIAVYNKRATGEKYLINPN  374 (379)
T ss_dssp             CHHHHHHHHCHHHHHHHHHHHHHTTTT-TTCC--CCSEEEEHHHHTCHHHHHHHTTCCTTCCEEEETT
T ss_pred             EeeeecccCCHHHHHHHHHHHHHHHhc-cCCC--cceEEecHHHhhhHHHHHHHhcCCCCceEEEeCC
Confidence            0        12    234556666666 4555  35689999999  999999999999999999986

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D

Probab=100.00  E-value=6.9e-45  Score=344.77  Aligned_cols=278  Identities=27%  Similarity=0.423  Sum_probs=235.6

Q ss_pred             eeEEEEcccCCcceEEEeccccCCCCCCCeEEEEEeEEecChHhHHhhcCCCCCCCCCCCCcCCCceeEEEEEeCCCCCC
Q 016265           84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKE  163 (392)
Q Consensus        84 mka~v~~~~~~~~~l~~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~~~p~v~G~e~~G~V~~vG~~v~~  163 (392)
                      |||+++++++.+..  ++ +.+.|+|++|||+|||.++|||++|++.+.|.++. ...+|.++|||++|+|+        
T Consensus         1 Mka~~~~~~g~~~~--l~-~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~-~~~~p~i~G~e~~G~V~--------   68 (302)
T 1iz0_A            1 MKAWVLKRLGGPLE--LV-DLPEPEAEEGEVVLRVEAVGLNFADHLMRLGAYLT-RLHPPFIPGMEVVGVVE--------   68 (302)
T ss_dssp             CEEEEECSTTSCEE--EE-ECCCCCCCTTEEEEEEEEEEECHHHHHHHHTCSSS-CCCSSBCCCCEEEEEET--------
T ss_pred             CeEEEEcCCCCchh--eE-ECCCCCCCCCEEEEEEEEEecCHHHHHHhCCCCCC-CCCCCCcccceEEEEEE--------
Confidence            79999999887643  45 78999999999999999999999999999997653 23578999999999997        


Q ss_pred             CCCCCEEEecccccccCCCCCCCcceeEEEecCCceeeCCCCCCHHhHhccchhHHHHHHHHH-hcCCCCCCeEEEEcCC
Q 016265          164 FKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLE-RTGFSAGKSILVLNGS  242 (392)
Q Consensus       164 ~~vGdrV~~~~~~~~~~~~~~~G~~a~~~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~al~-~~~~~~g~~VlI~Ga~  242 (392)
                         ||||++..         .+|+|+||++++++.++++|++++++++|++++++.|||+++. .+ +++|++|||+|++
T Consensus        69 ---GdrV~~~~---------~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~-~~~g~~vlV~Ga~  135 (302)
T 1iz0_A           69 ---GRRYAALV---------PQGGLAERVAVPKGALLPLPEGLSPEEAAAFPVSFLTAYLALKRAQ-ARPGEKVLVQAAA  135 (302)
T ss_dssp             ---TEEEEEEC---------SSCCSBSEEEEEGGGCEECCTTCCHHHHHTSHHHHHHHHHHHHHTT-CCTTCEEEESSTT
T ss_pred             ---CcEEEEec---------CCcceeeEEEEcHHHcEeCCCCCCHHHHHHhhhHHHHHHHHHHHhc-CCCCCEEEEECCC
Confidence               99999864         2699999999999999999999999999999999999999996 56 9999999999988


Q ss_pred             CcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCC-CccccCCCCccEEEecCc--cHHHHHHhcccCCe
Q 016265          243 GGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTK-DNFEDLPEKFDVVYDAIG--QCDRAVKAIKEGGT  319 (392)
Q Consensus       243 G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~-~~~~~~~~~~D~vid~~G--~~~~~~~~l~~~G~  319 (392)
                      |++|++++|+|+. .|++|++++++++|+++++++|+++++|+.+ .++.+..+++|++|| +|  .++.++++++++|+
T Consensus       136 G~vG~~~~~~a~~-~Ga~Vi~~~~~~~~~~~~~~~ga~~~~~~~~~~~~~~~~~~~d~vid-~g~~~~~~~~~~l~~~G~  213 (302)
T 1iz0_A          136 GALGTAAVQVARA-MGLRVLAAASRPEKLALPLALGAEEAATYAEVPERAKAWGGLDLVLE-VRGKEVEESLGLLAHGGR  213 (302)
T ss_dssp             BHHHHHHHHHHHH-TTCEEEEEESSGGGSHHHHHTTCSEEEEGGGHHHHHHHTTSEEEEEE-CSCTTHHHHHTTEEEEEE
T ss_pred             cHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHhcCCCEEEECCcchhHHHHhcCceEEEE-CCHHHHHHHHHhhccCCE
Confidence            9999999999998 5999999999999999999999999999876 555443378999999 98  47899999999999


Q ss_pred             EEEEcCCCCC---C--------ceEEEEe------ecHHHHHHHHH---HHHCCCcccccCCCcccchhhHHHHHHHHHh
Q 016265          320 VVALTGAVTP---P--------GFRFVVT------SNGEVLKKLNP---YLESGKVKPIIDPKGPFPFSQVVEAFSYIET  379 (392)
Q Consensus       320 iv~~g~~~~~---~--------~~~~~~~------~~~~~~~~~~~---~l~~g~l~~~~~~t~~~~l~~~~~A~~~l~~  379 (392)
                      ++.+|.....   .        .+.+...      ...+.++++++   ++++|++++.  ++++|+++|+++||+.+++
T Consensus       214 ~v~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~--i~~~~~l~~~~~A~~~~~~  291 (302)
T 1iz0_A          214 LVYIGAAEGEVAPIPPLRLMRRNLAVLGFWLTPLLREGALVEEALGFLLPRLGRELRPV--VGPVFPFAEAEAAFRALLD  291 (302)
T ss_dssp             EEEC-------CCCCTTHHHHTTCEEEECCHHHHTTCHHHHHHHHHHHGGGBTTTBCCC--EEEEEEGGGHHHHHHHTTC
T ss_pred             EEEEeCCCCCCCCcCHHHHHhCCCeEEEEeccchhhhHHHHHHHHhhhHHHHcCCcccc--cceEEcHHHHHHHHHHHHc
Confidence            9998754321   0        1122211      13567889999   9999999865  4689999999999999998


Q ss_pred             CCCCeeEEEEe
Q 016265          380 NKATGKVVIHP  390 (392)
Q Consensus       380 ~~~~gKvvl~~  390 (392)
                      ++..||+|+++
T Consensus       292 ~~~~gKvvv~~  302 (302)
T 1iz0_A          292 RGHTGKVVVRL  302 (302)
T ss_dssp             TTCCBEEEEEC
T ss_pred             CCCCceEEEeC
Confidence            88889999874

>3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa}

Probab=100.00  E-value=1.5e-44  Score=381.88  Aligned_cols=287  Identities=26%  Similarity=0.389  Sum_probs=247.4

Q ss_pred             eeEEEEcccCCcceEEEecccc--CCCCCCCeEEEEEeEEecChHhHHhhcCCCCCCCCCCCCcCCCceeEEEEEeCCCC
Q 016265           84 MKAWLYGEYGGVDVLKFDEKVT--VPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQV  161 (392)
Q Consensus        84 mka~v~~~~~~~~~l~~~~~~~--~p~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~~~p~v~G~e~~G~V~~vG~~v  161 (392)
                      ...+.+..+|.++.+++. +.+  .|+|++|||+|||.++|||++|++++.|.++     .|.++|||++|+|+++|++|
T Consensus       210 ~~~l~~~~~G~~~~L~~~-~~~~p~~~~~~~eVlV~V~a~gin~~D~~~~~G~~~-----~~~~lG~E~aG~V~~vG~~V  283 (795)
T 3slk_A          210 GWRLEATRPGSLDGLALV-DEPTATAPLGDGEVRIAMRAAGVNFRDALIALGMYP-----GVASLGSEGAGVVVETGPGV  283 (795)
T ss_dssp             SCCEEESSTTSSTTEEEC-CCHHHHSCCCSSEEEEEEEEEEECHHHHHHTTTCCS-----SCCCSCCCEEEEEEEECSSC
T ss_pred             eEEEecCCCCCccceEEE-eCCccCCCCCCCEEEEEEEEEccCHHHHHHHcCCCC-----CCccccceeEEEEEEeCCCC
Confidence            356777888988889998 666  4678999999999999999999999999764     35679999999999999999


Q ss_pred             CCCCCCCEEEecccccccCCCCCCCcceeEEEecCCceeeCCCCCCHHhHhccchhHHHHHHHH-HhcCCCCCCeEEEEc
Q 016265          162 KEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGL-ERTGFSAGKSILVLN  240 (392)
Q Consensus       162 ~~~~vGdrV~~~~~~~~~~~~~~~G~~a~~~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~al-~~~~~~~g~~VlI~G  240 (392)
                      ++|++||||++..          .|+|+||+++++..++++|+++++++||.++++++|||+++ +.+++++|++|||+|
T Consensus       284 ~~~~vGDrV~~~~----------~G~~ae~~~v~~~~~~~iP~~ls~~~AA~l~~~~~Ta~~al~~~a~l~~G~~VLI~g  353 (795)
T 3slk_A          284 TGLAPGDRVMGMI----------PKAFGPLAVADHRMVTRIPAGWSFARAASVPIVFLTAYYALVDLAGLRPGESLLVHS  353 (795)
T ss_dssp             CSSCTTCEEEECC----------SSCSSSEEEEETTSEEECCTTCCHHHHHHHHHHHHHHHCCCCCCTCCCTTCCEEEES
T ss_pred             CcCCCCCEEEEEe----------cCCCcCEEEeehHHEEECCCCCCHHHHHhhhHHHHHHHHHHHHHhCCCCCCEEEEec
Confidence            9999999999864          49999999999999999999999999999999999999998 568999999999999


Q ss_pred             CCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCCccccC------CCCccEEEecCc--cHHHHHH
Q 016265          241 GSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFEDL------PEKFDVVYDAIG--QCDRAVK  312 (392)
Q Consensus       241 a~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~~~------~~~~D~vid~~G--~~~~~~~  312 (392)
                      ++|++|++++|+||+ .|++|++++.++ |++.++ +|+++++|+++.++.+.      ++|+|+|||++|  .++.+++
T Consensus       354 aaGgvG~~aiqlAk~-~Ga~V~~t~~~~-k~~~l~-lga~~v~~~~~~~~~~~i~~~t~g~GvDvVld~~gg~~~~~~l~  430 (795)
T 3slk_A          354 AAGGVGMAAIQLARH-LGAEVYATASED-KWQAVE-LSREHLASSRTCDFEQQFLGATGGRGVDVVLNSLAGEFADASLR  430 (795)
T ss_dssp             TTBHHHHHHHHHHHH-TTCCEEEECCGG-GGGGSC-SCGGGEECSSSSTHHHHHHHHSCSSCCSEEEECCCTTTTHHHHT
T ss_pred             CCCHHHHHHHHHHHH-cCCEEEEEeChH-Hhhhhh-cChhheeecCChhHHHHHHHHcCCCCeEEEEECCCcHHHHHHHH
Confidence            999999999999999 499988887655 666665 99999999988776542      458999999988  4699999


Q ss_pred             hcccCCeEEEEcCCCCC---------CceEEEEe--------ecHHHHHHHHHHHHCCCcccccCCCcccchhhHHHHHH
Q 016265          313 AIKEGGTVVALTGAVTP---------PGFRFVVT--------SNGEVLKKLNPYLESGKVKPIIDPKGPFPFSQVVEAFS  375 (392)
Q Consensus       313 ~l~~~G~iv~~g~~~~~---------~~~~~~~~--------~~~~~~~~~~~~l~~g~l~~~~~~t~~~~l~~~~~A~~  375 (392)
                      +++++|+++.+|.....         .++.+...        ...+.++++++++++|++++.  ++++|+++|+++||+
T Consensus       431 ~l~~~Gr~v~iG~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~l~~~g~l~p~--~~~~~~l~~~~eA~~  508 (795)
T 3slk_A          431 MLPRGGRFLELGKTDVRDPVEVADAHPGVSYQAFDTVEAGPQRIGEMLHELVELFEGRVLEPL--PVTAWDVRQAPEALR  508 (795)
T ss_dssp             SCTTCEEEEECCSTTCCCHHHHHHHSSSEEEEECCGGGGHHHHHHHHHHHHHHHHHTTSCCCC--CEEEEEGGGHHHHHH
T ss_pred             HhcCCCEEEEeccccccCcccccccCCCCEEEEeeccccCHHHHHHHHHHHHHHHHcCCcCCC--cceeEcHHHHHHHHH
Confidence            99999999999865421         12232221        124568999999999999875  568999999999999


Q ss_pred             HHHhCCCCeeEEEEeC
Q 016265          376 YIETNKATGKVVIHPI  391 (392)
Q Consensus       376 ~l~~~~~~gKvvl~~~  391 (392)
                      .+++++..||+||++.
T Consensus       509 ~l~~g~~~GKvVl~~~  524 (795)
T 3slk_A          509 HLSQARHVGKLVLTMP  524 (795)
T ss_dssp             HHHHTCCCBEEEEECC
T ss_pred             HHhcCCccceEEEecC
Confidence            9999999999999874

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*

Probab=100.00  E-value=6.4e-44  Score=347.07  Aligned_cols=293  Identities=17%  Similarity=0.192  Sum_probs=235.7

Q ss_pred             eeEEEEcccCCcceEEEeccccCCCCCC-CeEEEEEeEEecChHhHHhhcC--CCCCCCCCC---CCcCCCceeEEEEEe
Q 016265           84 MKAWLYGEYGGVDVLKFDEKVTVPQVKE-DQVLIKVVAAALNPVDGKRRQG--KFKATDSPL---PTVPGYDVAGVVVKV  157 (392)
Q Consensus        84 mka~v~~~~~~~~~l~~~~~~~~p~~~~-~eVlV~v~~~~i~~~D~~~~~g--~~~~~~~~~---p~v~G~e~~G~V~~v  157 (392)
                      |||+++++++..  ++++ +++.|+|++ |||+|||.++|||++|++.+.|  .++  ...+   |.++|||++|+|++ 
T Consensus         1 MkA~~~~~~g~~--l~~~-~~~~P~~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~--~~~~~~~p~v~G~E~~G~V~~-   74 (366)
T 2cdc_A            1 MKAIIVKPPNAG--VQVK-DVDEKKLDSYGKIKIRTIYNGICGADREIVNGKLTLS--TLPKGKDFLVLGHEAIGVVEE-   74 (366)
T ss_dssp             CEEEEECTTSCC--CEEE-ECCGGGSCCCSSEEEEEEEEEECHHHHHHHTTCC---------CCSCEECCSEEEEEECS-
T ss_pred             CeEEEEeCCCCc--eEEE-ECcCCCCCCCCEEEEEEEEEeeccccHHHHcCCCCCC--CCCcCCCCCcCCcceEEEEEe-
Confidence            799999988863  7787 899999999 9999999999999999999998  543  1345   89999999999999 


Q ss_pred             CCCCCCCCCCCEEEecccccc------------------cC--CCC-CCCcceeEEEecCCceeeCCCCCCHHhHhccch
Q 016265          158 GTQVKEFKEGDEVYGDINEKA------------------LE--GPK-QFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPL  216 (392)
Q Consensus       158 G~~v~~~~vGdrV~~~~~~~~------------------~~--~~~-~~G~~a~~~~v~~~~~~~iP~~l~~~~aa~l~~  216 (392)
                       ++ ++|++||||++.....+                  ..  |.. .+|+|+||++++++.++++|++++ ++|+ ++.
T Consensus        75 -~~-~~~~~GDrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~~~g~~~~~G~~aey~~v~~~~~~~iP~~l~-~~Aa-l~~  150 (366)
T 2cdc_A           75 -SY-HGFSQGDLVMPVNRRGCGICRNCLVGRPDFCETGEFGEAGIHKMDGFMREWWYDDPKYLVKIPKSIE-DIGI-LAQ  150 (366)
T ss_dssp             -CC-SSCCTTCEEEECSEECCSSSHHHHTTCGGGCSSSCCEEETTBEECCSCBSEEEECGGGEEEECGGGT-TTGG-GHH
T ss_pred             -CC-CCCCCCCEEEEcCCCCCCCChhhhCcCcccCCCCCcccCCccCCCCceeEEEEechHHeEECcCCcc-hhhh-hcC
Confidence             77 89999999987532100                  00  222 469999999999999999999999 7764 778


Q ss_pred             hHHHHHHHHH-----hcCCC--C-------CCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCc---ccHHHHHhcCC
Q 016265          217 AIETAYEGLE-----RTGFS--A-------GKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSST---RNLEFLKSLGA  279 (392)
Q Consensus       217 ~~~ta~~al~-----~~~~~--~-------g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~---~~~~~~~~~G~  279 (392)
                      ++.|||+++.     .++++  +       |++|||+|+ |++|++++|+|+.. |++|+++++++   +|+++++++|+
T Consensus       151 ~~~ta~~al~~~~~~~~~~~~~~~~~~~~~g~~VlV~Ga-G~vG~~~~q~a~~~-Ga~Vi~~~~~~~~~~~~~~~~~~ga  228 (366)
T 2cdc_A          151 PLADIEKSIEEILEVQKRVPVWTCDDGTLNCRKVLVVGT-GPIGVLFTLLFRTY-GLEVWMANRREPTEVEQTVIEETKT  228 (366)
T ss_dssp             HHHHHHHHHHHHHHHGGGSSCCSCTTSSSTTCEEEEESC-HHHHHHHHHHHHHH-TCEEEEEESSCCCHHHHHHHHHHTC
T ss_pred             cHHHHHHHHHhhhhcccCccccccccccCCCCEEEEECC-CHHHHHHHHHHHhC-CCEEEEEeCCccchHHHHHHHHhCC
Confidence            8899999998     78888  8       999999997 99999999999985 99999999988   89999999999


Q ss_pred             cEEEeCCCCccccC----CCCccEEEecCcc---H-HHHHHhcccCCeEEEEcCCCCC-CceE-------------EEE-
Q 016265          280 DLAIDYTKDNFEDL----PEKFDVVYDAIGQ---C-DRAVKAIKEGGTVVALTGAVTP-PGFR-------------FVV-  336 (392)
Q Consensus       280 ~~vi~~~~~~~~~~----~~~~D~vid~~G~---~-~~~~~~l~~~G~iv~~g~~~~~-~~~~-------------~~~-  336 (392)
                      +++ | .+ ++.+.    .+++|++||++|.   + +.++++++++|+++.+|..... ..++             +.. 
T Consensus       229 ~~v-~-~~-~~~~~~~~~~~~~d~vid~~g~~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~~~~i~g~  305 (366)
T 2cdc_A          229 NYY-N-SS-NGYDKLKDSVGKFDVIIDATGADVNILGNVIPLLGRNGVLGLFGFSTSGSVPLDYKTLQEIVHTNKTIIGL  305 (366)
T ss_dssp             EEE-E-CT-TCSHHHHHHHCCEEEEEECCCCCTHHHHHHGGGEEEEEEEEECSCCCSCEEEEEHHHHHHHHHTTCEEEEC
T ss_pred             cee-c-hH-HHHHHHHHhCCCCCEEEECCCChHHHHHHHHHHHhcCCEEEEEecCCCCccccChhhhHHHHhcCcEEEEe
Confidence            988 8 55 43221    2579999999983   5 7899999999999999865432 1111             111 


Q ss_pred             -eecHHHHHHHHHHHHCCCcc----cccCCCcccchhhHHHHHHHH-HhCCCCeeEEEEeC
Q 016265          337 -TSNGEVLKKLNPYLESGKVK----PIIDPKGPFPFSQVVEAFSYI-ETNKATGKVVIHPI  391 (392)
Q Consensus       337 -~~~~~~~~~~~~~l~~g~l~----~~~~~t~~~~l~~~~~A~~~l-~~~~~~gKvvl~~~  391 (392)
                       ....+.++++++++++|+++    ....++++|+|+|+++||+.+ .+++..||+||++.
T Consensus       306 ~~~~~~~~~~~~~l~~~g~i~~~~~~~~~i~~~~~l~~~~~A~~~l~~~~~~~gKvvi~~~  366 (366)
T 2cdc_A          306 VNGQKPHFQQAVVHLASWKTLYPKAAKMLITKTVSINDEKELLKVLREKEHGEIKIRILWE  366 (366)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHHSHHHHTTSEEEEEETTCHHHHHHHHHCCCTTCCEEEEECC
T ss_pred             cCCCHHHHHHHHHHHHcCCCCcccchhhcEEEEEcHHHHHHHHHHHhhhcCCceEEEEecC
Confidence             12367899999999999966    444456899999999999994 34566799999874

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=100.00  E-value=2.3e-41  Score=324.81  Aligned_cols=286  Identities=22%  Similarity=0.322  Sum_probs=234.3

Q ss_pred             CcceeEEEEccc--CC--cceEEEeccccCCCCCCCeEEEEEeEEecChHhHHhhcCCCCCCCCCCCCcCCCceeEEEEE
Q 016265           81 PSEMKAWLYGEY--GG--VDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVK  156 (392)
Q Consensus        81 p~~mka~v~~~~--~~--~~~l~~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~~~p~v~G~e~~G~V~~  156 (392)
                      +.+||+|++.++  |.  ++.++++ +.+.|+|++|||+|||.++|||+.|.. +.+     ...+|.++|||++|+|++
T Consensus         5 ~~~mka~~~~~~~~g~~~~~~l~~~-e~~~P~~~~~eVlVkv~a~gi~~~~~~-~~~-----~~~~p~~~g~e~~G~Vv~   77 (333)
T 1v3u_A            5 MVKAKSWTLKKHFQGKPTQSDFELK-TVELPPLKNGEVLLEALFLSVDPYMRI-ASK-----RLKEGAVMMGQQVARVVE   77 (333)
T ss_dssp             CCEEEEEEECC-----CCGGGEEEE-EEECCCCCTTCEEEEEEEEECCTHHHH-HTT-----TCCTTSBCCCCEEEEEEE
T ss_pred             cccccEEEEeecCCCCCCccceEEE-eCCCCCCCCCEEEEEEEEeccCHHHcc-ccC-----cCCCCcccccceEEEEEe
Confidence            356999999885  43  3568888 899999999999999999999999873 221     234678999999999999


Q ss_pred             eCCCCCCCCCCCEEEecccccccCCCCCCCcceeEEEecCCceeeCCCC----CCHHh-HhccchhHHHHHHHH-HhcCC
Q 016265          157 VGTQVKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKN----LDFVQ-AAGLPLAIETAYEGL-ERTGF  230 (392)
Q Consensus       157 vG~~v~~~~vGdrV~~~~~~~~~~~~~~~G~~a~~~~v~~~~~~~iP~~----l~~~~-aa~l~~~~~ta~~al-~~~~~  230 (392)
                      .  +|++|++||||++            .|+|+||++++++.++++|++    +++++ ++++++++.|||+++ +.+++
T Consensus        78 ~--~v~~~~vGdrV~~------------~g~~aey~~v~~~~~~~iP~~~~~~~~~~~a~a~l~~~~~ta~~al~~~~~~  143 (333)
T 1v3u_A           78 S--KNSAFPAGSIVLA------------QSGWTTHFISDGKGLEKLLTEWPDKLPLSLALGTIGMPGLTAYFGLLEVCGV  143 (333)
T ss_dssp             E--SCTTSCTTCEEEE------------CCCSBSEEEESSTTEEECC--CCTTSCGGGGGTTTSHHHHHHHHHHHTTSCC
T ss_pred             c--CCCCCCCCCEEEe------------cCceEEEEEechHHeEEcCcccccCCCHHHHHHHhCChHHHHHHHHHHhhCC
Confidence            5  5789999999998            388999999999999999997    88888 478899999999999 56889


Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCC-Ccccc-----CCCCccEEEecC
Q 016265          231 SAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTK-DNFED-----LPEKFDVVYDAI  304 (392)
Q Consensus       231 ~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~-~~~~~-----~~~~~D~vid~~  304 (392)
                      ++|++|||+|++|++|++++|+++. .|++|+++++++++++.++++|+++++|+.+ +++.+     ..+++|++||++
T Consensus       144 ~~g~~vlV~Ga~ggiG~~~~~~~~~-~G~~V~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~d~vi~~~  222 (333)
T 1v3u_A          144 KGGETVLVSAAAGAVGSVVGQIAKL-KGCKVVGAAGSDEKIAYLKQIGFDAAFNYKTVNSLEEALKKASPDGYDCYFDNV  222 (333)
T ss_dssp             CSSCEEEEESTTBHHHHHHHHHHHH-TTCEEEEEESSHHHHHHHHHTTCSEEEETTSCSCHHHHHHHHCTTCEEEEEESS
T ss_pred             CCCCEEEEecCCCcHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHhcCCcEEEecCCHHHHHHHHHHHhCCCCeEEEECC
Confidence            9999999999889999999999998 5999999999999999999999999999876 54422     124799999999


Q ss_pred             c--cHHHHHHhcccCCeEEEEcCCCC------C---Cc--------eEEEEee--------cHHHHHHHHHHHHCCCccc
Q 016265          305 G--QCDRAVKAIKEGGTVVALTGAVT------P---PG--------FRFVVTS--------NGEVLKKLNPYLESGKVKP  357 (392)
Q Consensus       305 G--~~~~~~~~l~~~G~iv~~g~~~~------~---~~--------~~~~~~~--------~~~~~~~~~~~l~~g~l~~  357 (392)
                      |  .++.++++++++|+++.+|....      +   ..        +.+....        ..+.++++++++++|++++
T Consensus       223 g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~l~~~g~l~~  302 (333)
T 1v3u_A          223 GGEFLNTVLSQMKDFGKIAICGAISVYNRMDQLPPGPSPESIIYKQLRIEGFIVYRWQGDVREKALRDLMKWVLEGKIQY  302 (333)
T ss_dssp             CHHHHHHHHTTEEEEEEEEECCCCC-------CCBCCCHHHHHHTTCEEEECCGGGCCTHHHHHHHHHHHHHHHTTSSCC
T ss_pred             ChHHHHHHHHHHhcCCEEEEEeccccccCCCCCCCCcCHHHHhhcCceEEEEehhhcchHHHHHHHHHHHHHHHCCCccC
Confidence            9  46889999999999999986431      1   01        1111110        1456788999999999988


Q ss_pred             ccCCCcccchhhHHHHHHHHHhCCCCeeEEEEe
Q 016265          358 IIDPKGPFPFSQVVEAFSYIETNKATGKVVIHP  390 (392)
Q Consensus       358 ~~~~t~~~~l~~~~~A~~~l~~~~~~gKvvl~~  390 (392)
                      ...  ..|+|+|+++||+.+++++..||+|+++
T Consensus       303 ~~~--~~~~l~~~~~A~~~~~~~~~~gKvvl~~  333 (333)
T 1v3u_A          303 HEH--VTKGFENMPAAFIEMLNGANLGKAVVTA  333 (333)
T ss_dssp             CEE--EEECGGGHHHHHHHHHTTCCSBEEEEEC
T ss_pred             ccc--cccCHHHHHHHHHHHHcCCCCceEEEeC
Confidence            654  3479999999999999998889999874

>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A*

Probab=100.00  E-value=1.6e-41  Score=327.45  Aligned_cols=295  Identities=22%  Similarity=0.312  Sum_probs=235.4

Q ss_pred             CCcceeEEEEccc--CCcc--eEEEec-cccCCC-CCCCeEEEEEeEEecChHhHHhhcCCCCCCC--CCCCCcCCCcee
Q 016265           80 VPSEMKAWLYGEY--GGVD--VLKFDE-KVTVPQ-VKEDQVLIKVVAAALNPVDGKRRQGKFKATD--SPLPTVPGYDVA  151 (392)
Q Consensus        80 ~p~~mka~v~~~~--~~~~--~l~~~~-~~~~p~-~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~--~~~p~v~G~e~~  151 (392)
                      ||.+||++++...  +.+.  .+++++ +++.|. |++|||||||.++|+|+.|. .+.|.+....  ..+|.++|||++
T Consensus         1 m~~~mka~~m~a~~~~~p~~~~l~~~~~~~~~P~~~~~~eVlVkv~a~g~~~~~~-~~~g~~~~~~~~~~~p~v~G~e~~   79 (345)
T 2j3h_A            1 MTATNKQVILKDYVSGFPTESDFDFTTTTVELRVPEGTNSVLVKNLYLSCDPYMR-IRMGKPDPSTAALAQAYTPGQPIQ   79 (345)
T ss_dssp             CEEEEEEEEECSCBSSSCCGGGEEEEEEEEECCSCSSSSCEEEEECEEECCTTHH-HHHBC---------CCCCTTSBCE
T ss_pred             CCccceEEEEecCCCCCCCccceeEEEeecCCCCCCCCCEEEEEEEEecCCHHHH-hhcccCCCCccccCCCcCCCCeee
Confidence            5778999999876  4444  477752 567776 89999999999999888875 4455432111  236889999999


Q ss_pred             EEEEE--eCCCCCCCCCCCEEEecccccccCCCCCCCcceeEEEecCCc--eeeCCC---CCCHHhHhccchhHHHHHHH
Q 016265          152 GVVVK--VGTQVKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERL--LAPKPK---NLDFVQAAGLPLAIETAYEG  224 (392)
Q Consensus       152 G~V~~--vG~~v~~~~vGdrV~~~~~~~~~~~~~~~G~~a~~~~v~~~~--~~~iP~---~l~~~~aa~l~~~~~ta~~a  224 (392)
                      |+|++  +|++|++|++||||++.            |+|+||++++...  ++++|+   .++++ ++++++++.|||++
T Consensus        80 G~~~~GvV~~~v~~~~vGdrV~~~------------g~~aey~~v~~~~~~~~~ip~~~~~~~~~-aa~l~~~~~ta~~a  146 (345)
T 2j3h_A           80 GYGVSRIIESGHPDYKKGDLLWGI------------VAWEEYSVITPMTHAHFKIQHTDVPLSYY-TGLLGMPGMTAYAG  146 (345)
T ss_dssp             EEEEEEEEEECSTTCCTTCEEEEE------------EESBSEEEECCCTTTCEEECCCSSCTTGG-GTTTSHHHHHHHHH
T ss_pred             cceEEEEEecCCCCCCCCCEEEee------------cCceeEEEecccccceeecCCCCCCHHHH-HHhccccHHHHHHH
Confidence            99999  99999999999999973            7899999998876  999996   45665 67788999999999


Q ss_pred             H-HhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHH-hcCCcEEEeCCCC-cccc----C-CCC
Q 016265          225 L-ERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLK-SLGADLAIDYTKD-NFED----L-PEK  296 (392)
Q Consensus       225 l-~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~-~~G~~~vi~~~~~-~~~~----~-~~~  296 (392)
                      + +.+++++|++|||+|++|++|++++|+|+. .|++|+++++++++++.++ ++|+++++|+.+. ++.+    . .++
T Consensus       147 l~~~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~-~G~~V~~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~  225 (345)
T 2j3h_A          147 FYEVCSPKEGETVYVSAASGAVGQLVGQLAKM-MGCYVVGSAGSKEKVDLLKTKFGFDDAFNYKEESDLTAALKRCFPNG  225 (345)
T ss_dssp             HHTTSCCCTTCEEEESSTTSHHHHHHHHHHHH-TTCEEEEEESSHHHHHHHHHTSCCSEEEETTSCSCSHHHHHHHCTTC
T ss_pred             HHHHhCCCCCCEEEEECCCcHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHHcCCceEEecCCHHHHHHHHHHHhCCC
Confidence            9 568999999999999889999999999998 5999999999999999998 7999999998653 4322    1 357


Q ss_pred             ccEEEecCc--cHHHHHHhcccCCeEEEEcCCCC------CCc----------eEEEEe-------ecHHHHHHHHHHHH
Q 016265          297 FDVVYDAIG--QCDRAVKAIKEGGTVVALTGAVT------PPG----------FRFVVT-------SNGEVLKKLNPYLE  351 (392)
Q Consensus       297 ~D~vid~~G--~~~~~~~~l~~~G~iv~~g~~~~------~~~----------~~~~~~-------~~~~~~~~~~~~l~  351 (392)
                      +|++||++|  .++.++++++++|+++.+|....      ...          +.+...       ...+.+++++++++
T Consensus       226 ~d~vi~~~g~~~~~~~~~~l~~~G~~v~~G~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~l~~  305 (345)
T 2j3h_A          226 IDIYFENVGGKMLDAVLVNMNMHGRIAVCGMISQYNLENQEGVHNLSNIIYKRNRIQGFVVSDFYDKYSKFLEFVLPHIR  305 (345)
T ss_dssp             EEEEEESSCHHHHHHHHTTEEEEEEEEECCCGGGTTCSSCCCBSCTTHHHHHTCEEEECCGGGGGGGHHHHHHHHHHHHH
T ss_pred             CcEEEECCCHHHHHHHHHHHhcCCEEEEEccccccccCCccccccHHHHhhhceeeceeeehhhhhhHHHHHHHHHHHHH
Confidence            999999998  46889999999999999975431      111          111111       01345889999999


Q ss_pred             CCCcccccCCCcccchhhHHHHHHHHHhCCCCeeEEEEeC
Q 016265          352 SGKVKPIIDPKGPFPFSQVVEAFSYIETNKATGKVVIHPI  391 (392)
Q Consensus       352 ~g~l~~~~~~t~~~~l~~~~~A~~~l~~~~~~gKvvl~~~  391 (392)
                      +|++++.  +...|+|+++++||+.+++++..||+|+.+.
T Consensus       306 ~g~i~~~--~~~~~~l~~~~~A~~~~~~~~~~gKvvv~~~  343 (345)
T 2j3h_A          306 EGKITYV--EDVADGLEKAPEALVGLFHGKNVGKQVVVVA  343 (345)
T ss_dssp             TTSSCCC--EEEEESGGGSHHHHHHHHTTCCSSEEEEESS
T ss_pred             CCCCcCc--ccccCCHHHHHHHHHHHHcCCCceEEEEEeC
Confidence            9999864  2357999999999999999998999999875

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*

Probab=100.00  E-value=2.9e-32  Score=315.56  Aligned_cols=282  Identities=22%  Similarity=0.307  Sum_probs=226.0

Q ss_pred             EEEcccCCcceEEEeccccCCC-C--CCCeEEEEEeEEecChHhHHhhcCCCCCC-----CCCCCCcCCCceeEEEEEeC
Q 016265           87 WLYGEYGGVDVLKFDEKVTVPQ-V--KEDQVLIKVVAAALNPVDGKRRQGKFKAT-----DSPLPTVPGYDVAGVVVKVG  158 (392)
Q Consensus        87 ~v~~~~~~~~~l~~~~~~~~p~-~--~~~eVlV~v~~~~i~~~D~~~~~g~~~~~-----~~~~p~v~G~e~~G~V~~vG  158 (392)
                      +....+|..+.+.+. +.+... +  .++||+|+|.++|||+.|++++.|.++..     ....|.++|+|++|+|.   
T Consensus      1533 l~~~~~g~l~sl~~~-~~~~~~~~~l~~~eVlVkV~aaglN~~Dv~~~~G~~~~~~~p~~~~~~~~~lG~E~aG~V~--- 1608 (2512)
T 2vz8_A         1533 VNVLSRGDLSSIRWV-CSPLHYALPASCQDRLCSVYYTSLNFRDVMLATGKLSPDSIPGKWLTRDCMLGMEFSGRDA--- 1608 (2512)
T ss_dssp             EEESSTTCTTSEEEE-ECTTTTCCCHHHHTTEEEEEEEECCHHHHHHHHTSSCGGGCCSCCSCSSSCCCCEEEEEET---
T ss_pred             EEccCCCCcCceEEE-ecCcccccCCCCCceEEEEEecccCHHHHHHHhCCCccccccccccccCCceEEEEEEEEc---
Confidence            344455666677887 555433 3  37999999999999999999999976422     12346789999999883   


Q ss_pred             CCCCCCCCCCEEEecccccccCCCCCCCcceeEEEecCCceeeCCCCCCHHhHhccchhHHHHHHHH-HhcCCCCCCeEE
Q 016265          159 TQVKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGL-ERTGFSAGKSIL  237 (392)
Q Consensus       159 ~~v~~~~vGdrV~~~~~~~~~~~~~~~G~~a~~~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~al-~~~~~~~g~~Vl  237 (392)
                             +||||++...         .|+|+||++++++.++++|+++++++||.+++++.|||+++ +.+++++|++||
T Consensus      1609 -------vGdrV~g~~~---------~G~~Aeyv~vp~~~v~~iPd~ls~~eAA~lp~~~~TA~~al~~~a~l~~Ge~VL 1672 (2512)
T 2vz8_A         1609 -------SGRRVMGMVP---------AEGLATSVLLLQHATWEVPSTWTLEEAASVPIVYTTAYYSLVVRGRMQPGESVL 1672 (2512)
T ss_dssp             -------TSCCEEEECS---------SCCSBSEEECCGGGEEECCTTSCHHHHTTSHHHHHHHHHHHTTTTCCCTTCEEE
T ss_pred             -------cCCEEEEeec---------CCceeeEEEcccceEEEeCCCCCHHHHHHhHHHHHHHHHHHHHHhcCCCCCEEE
Confidence                   7999998642         59999999999999999999999999999999999999999 568899999999


Q ss_pred             EEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHh----cCCcEEEeCCCCcccc----C--CCCccEEEecCc--
Q 016265          238 VLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKS----LGADLAIDYTKDNFED----L--PEKFDVVYDAIG--  305 (392)
Q Consensus       238 I~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~----~G~~~vi~~~~~~~~~----~--~~~~D~vid~~G--  305 (392)
                      |+||+|++|++++|+||. .|++|++++.+++|++++++    +|+++++++.+.++.+    .  ++|+|+||||+|  
T Consensus      1673 I~gaaGgVG~aAiqlAk~-~Ga~Viat~~s~~k~~~l~~~~~~lga~~v~~~~~~~~~~~i~~~t~g~GvDvVld~~g~~ 1751 (2512)
T 2vz8_A         1673 IHSGSGGVGQAAIAIALS-RGCRVFTTVGSAEKRAYLQARFPQLDETCFANSRDTSFEQHVLRHTAGKGVDLVLNSLAEE 1751 (2512)
T ss_dssp             ETTTTSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHHCTTCCSTTEEESSSSHHHHHHHHTTTSCCEEEEEECCCHH
T ss_pred             EEeCChHHHHHHHHHHHH-cCCEEEEEeCChhhhHHHHhhcCCCCceEEecCCCHHHHHHHHHhcCCCCceEEEECCCch
Confidence            999999999999999999 59999999999999999986    7899999998876543    1  357999999988  


Q ss_pred             cHHHHHHhcccCCeEEEEcCCCC-----------CCceEEEEe-------ecHHHHHHH----HHHHHCCCcccccCCCc
Q 016265          306 QCDRAVKAIKEGGTVVALTGAVT-----------PPGFRFVVT-------SNGEVLKKL----NPYLESGKVKPIIDPKG  363 (392)
Q Consensus       306 ~~~~~~~~l~~~G~iv~~g~~~~-----------~~~~~~~~~-------~~~~~~~~~----~~~l~~g~l~~~~~~t~  363 (392)
                      .++.++++++++|+++.+|....           ...+.+...       .....++++    .+++.+|.+++.  +++
T Consensus      1752 ~l~~~l~~L~~~Gr~V~iG~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~l~~l~~~~~~g~l~p~--i~~ 1829 (2512)
T 2vz8_A         1752 KLQASVRCLAQHGRFLEIGKFDLSNNHALGMAVFLKNVTFHGILLDSLFEEGGATWQEVSELLKAGIQEGVVQPL--KCT 1829 (2512)
T ss_dssp             HHHHHHTTEEEEEEEEECCCHHHHTTCEEEGGGGGGCCEEEECCGGGTTSSCCHHHHHHHHHHHHHHTTTCSCCC--CEE
T ss_pred             HHHHHHHhcCCCcEEEEeecccccccCcccccccccCCcEEEeeHHHHhhhCHHHHHHHHHHHHHHHHcCCcCCC--cce
Confidence            46899999999999999985320           011222211       012334444    444557778764  568


Q ss_pred             ccchhhHHHHHHHHHhCCCCeeEEEEeC
Q 016265          364 PFPFSQVVEAFSYIETNKATGKVVIHPI  391 (392)
Q Consensus       364 ~~~l~~~~~A~~~l~~~~~~gKvvl~~~  391 (392)
                      +|+++|+++||+.+.+++..||+|+.++
T Consensus      1830 ~f~l~ei~eA~~~l~~g~~~GKvVi~~~ 1857 (2512)
T 2vz8_A         1830 VFPRTKVEAAFRYMAQGKHIGKVVIQVR 1857 (2512)
T ss_dssp             EEESSTHHHHHHHHHTTCCSSEEEEECS
T ss_pred             EecHHHHHHHHHhhhccCccceEEEECC
Confidence            9999999999999999999999999874

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=99.82  E-value=1.3e-19  Score=160.23  Aligned_cols=162  Identities=27%  Similarity=0.400  Sum_probs=121.0

Q ss_pred             CceeeCCCCCCHHhHhccchhHHHHHHHHH-hcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHH
Q 016265          197 RLLAPKPKNLDFVQAAGLPLAIETAYEGLE-RTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLK  275 (392)
Q Consensus       197 ~~~~~iP~~l~~~~aa~l~~~~~ta~~al~-~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~  275 (392)
                      +.++++|+++++++|+++++++.|||+++. .+++++|++|+|+||+|++|++++|+++.. |++|+++++++++++.++
T Consensus         2 ~~~~~~P~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~-G~~V~~~~~~~~~~~~~~   80 (198)
T 1pqw_A            2 DLVVPIPDTLADNEAATFGVAYLTAWHSLCEVGRLSPGERVLIHSATGGVGMAAVSIAKMI-GARIYTTAGSDAKREMLS   80 (198)
T ss_dssp             ------------CHHHHHHHHHHHHHHHHHTTSCCCTTCEEEETTTTSHHHHHHHHHHHHH-TCEEEEEESSHHHHHHHH
T ss_pred             CceeECCCCCCHHHHHHhhHHHHHHHHHHHHHhCCCCCCEEEEeeCCChHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHH
Confidence            467899999999999999999999999995 578999999999999999999999999985 999999999999999999


Q ss_pred             hcCCcEEEeCCCCcccc----C--CCCccEEEecCc--cHHHHHHhcccCCeEEEEcCCCC--C---------CceEEEE
Q 016265          276 SLGADLAIDYTKDNFED----L--PEKFDVVYDAIG--QCDRAVKAIKEGGTVVALTGAVT--P---------PGFRFVV  336 (392)
Q Consensus       276 ~~G~~~vi~~~~~~~~~----~--~~~~D~vid~~G--~~~~~~~~l~~~G~iv~~g~~~~--~---------~~~~~~~  336 (392)
                      ++|++.++|+.+.++.+    .  .+++|++||++|  .++.++++++++|+++.+|....  .         ..+.+..
T Consensus        81 ~~g~~~~~d~~~~~~~~~~~~~~~~~~~D~vi~~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~  160 (198)
T 1pqw_A           81 RLGVEYVGDSRSVDFADEILELTDGYGVDVVLNSLAGEAIQRGVQILAPGGRFIELGKKDVYADASLGLAALAKSASFSV  160 (198)
T ss_dssp             TTCCSEEEETTCSTHHHHHHHHTTTCCEEEEEECCCTHHHHHHHHTEEEEEEEEECSCGGGTTTCEEEGGGGTTTCEEEE
T ss_pred             HcCCCEEeeCCcHHHHHHHHHHhCCCCCeEEEECCchHHHHHHHHHhccCCEEEEEcCCCCcCcCcCChhHhcCCcEEEE
Confidence            99999999887654422    1  247999999998  36899999999999999986431  1         1122221


Q ss_pred             ---------ee--cHHHHHHHHHHHHCCCccccc
Q 016265          337 ---------TS--NGEVLKKLNPYLESGKVKPII  359 (392)
Q Consensus       337 ---------~~--~~~~~~~~~~~l~~g~l~~~~  359 (392)
                               ..  ..+.++++++++++|++++.+
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~~  194 (198)
T 1pqw_A          161 VDLDLNLKLQPARYRQLLQHILQHVADGKLEVLP  194 (198)
T ss_dssp             CCHHHHHHHCHHHHHHHHHHHHHHHHTTSSCCCC
T ss_pred             EehHHhhccCHHHHHHHHHHHHHHHHcCCccCCC
Confidence                     00  135678888999999988753

>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1

Probab=98.87  E-value=3.2e-12  Score=125.08  Aligned_cols=177  Identities=18%  Similarity=0.211  Sum_probs=124.7

Q ss_pred             CcCCCceeEEEEEeCCCCCCCCCCCEEEecccccccCCCCCCCcceeEEEecCCceeeCCCCCCHHhHhccchhHHHHHH
Q 016265          144 TVPGYDVAGVVVKVGTQVKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYE  223 (392)
Q Consensus       144 ~v~G~e~~G~V~~vG~~v~~~~vGdrV~~~~~~~~~~~~~~~G~~a~~~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~  223 (392)
                      ...|+|.++.|.++|++++++.+|++++.-.-..........|++++|+......++.+|++++.+.++. ..+..++|+
T Consensus        75 ~~~g~~a~~~i~~v~~Glds~~vGe~~Il~qvk~~~~~~~~~G~~~~~~~~~~~~a~~~~k~v~~~~~~~-~~~~s~a~~  153 (404)
T 1gpj_A           75 VKRGSEAVRHLFRVASGLESMMVGEQEILRQVKKAYDRAARLGTLDEALKIVFRRAINLGKRAREETRIS-EGAVSIGSA  153 (404)
T ss_dssp             EEEHHHHHHHHHHHHTTTTSSSTTCHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHSSTT-CSCCSHHHH
T ss_pred             eecCchHhhhheeeccCCCCCcCCcchhHHHHHHHHHHHHHcCCchHHHHHHHHHHhhhhccCcchhhhc-CCCccHHHH
Confidence            3578999999999999999999999973210000000001236788888888888888998887776554 334446787


Q ss_pred             HHHhcC----CCCCCeEEEEcCCCcHHHHHHHHHHHhcCC-eEEEEeCCcccH-HHHHhcCCcEEEeCCCCccccCCCCc
Q 016265          224 GLERTG----FSAGKSILVLNGSGGVGSLVIQLAKQVFGA-SRVAATSSTRNL-EFLKSLGADLAIDYTKDNFEDLPEKF  297 (392)
Q Consensus       224 al~~~~----~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~-~vv~~~~~~~~~-~~~~~~G~~~vi~~~~~~~~~~~~~~  297 (392)
                      ++..+.    -.+|++|+|+| +|++|.++++.++.. |+ ++++++++.+|. ++++++|++ ++++.  ++.+...++
T Consensus       154 av~~a~~~~~~l~g~~VlIiG-aG~iG~~~a~~l~~~-G~~~V~v~~r~~~ra~~la~~~g~~-~~~~~--~l~~~l~~a  228 (404)
T 1gpj_A          154 AVELAERELGSLHDKTVLVVG-AGEMGKTVAKSLVDR-GVRAVLVANRTYERAVELARDLGGE-AVRFD--ELVDHLARS  228 (404)
T ss_dssp             HHHHHHHHHSCCTTCEEEEES-CCHHHHHHHHHHHHH-CCSEEEEECSSHHHHHHHHHHHTCE-ECCGG--GHHHHHHTC
T ss_pred             HHHHHHHHhccccCCEEEEEC-hHHHHHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHcCCc-eecHH--hHHHHhcCC
Confidence            775432    35899999999 799999999999984 98 888888888886 677889976 34332  333334579


Q ss_pred             cEEEecCcc---H--HHHHHh--c--ccCCeEEEEcCC
Q 016265          298 DVVYDAIGQ---C--DRAVKA--I--KEGGTVVALTGA  326 (392)
Q Consensus       298 D~vid~~G~---~--~~~~~~--l--~~~G~iv~~g~~  326 (392)
                      |+||+|+|.   +  ...++.  +  +++|.++.++..
T Consensus       229 DvVi~at~~~~~~~~~~~l~~~~lk~r~~~~~v~vdia  266 (404)
T 1gpj_A          229 DVVVSATAAPHPVIHVDDVREALRKRDRRSPILIIDIA  266 (404)
T ss_dssp             SEEEECCSSSSCCBCHHHHHHHHHHCSSCCCEEEEECC
T ss_pred             CEEEEccCCCCceecHHHHHHHHHhccCCCCEEEEEcc
Confidence            999999983   1  355665  4  567777777543

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=98.55  E-value=6e-08  Score=93.27  Aligned_cols=92  Identities=17%  Similarity=0.242  Sum_probs=73.7

Q ss_pred             CCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcE--EEeCCCCccccCCCCccEEEecCc--c--
Q 016265          233 GKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADL--AIDYTKDNFEDLPEKFDVVYDAIG--Q--  306 (392)
Q Consensus       233 g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~--vi~~~~~~~~~~~~~~D~vid~~G--~--  306 (392)
                      +++|+|+| +|++|++++++++.+ |++|++++++++|++.++++|++.  +++....++.+...++|+||+|++  .  
T Consensus       167 ~~~VlViG-aGgvG~~aa~~a~~~-Ga~V~v~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvVI~~~~~~~~~  244 (361)
T 1pjc_A          167 PGKVVILG-GGVVGTEAAKMAVGL-GAQVQIFDINVERLSYLETLFGSRVELLYSNSAEIETAVAEADLLIGAVLVPGRR  244 (361)
T ss_dssp             CCEEEEEC-CSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHGGGSEEEECCHHHHHHHHHTCSEEEECCCCTTSS
T ss_pred             CCEEEEEC-CCHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHHHHhhCceeEeeeCCHHHHHHHHcCCCEEEECCCcCCCC
Confidence            48999999 599999999999984 999999999999999998877554  444443344443457999999986  2  


Q ss_pred             -----HHHHHHhcccCCeEEEEcCC
Q 016265          307 -----CDRAVKAIKEGGTVVALTGA  326 (392)
Q Consensus       307 -----~~~~~~~l~~~G~iv~~g~~  326 (392)
                           .+..++.++++|+++.++..
T Consensus       245 ~~~li~~~~~~~~~~g~~ivdv~~~  269 (361)
T 1pjc_A          245 APILVPASLVEQMRTGSVIVDVAVD  269 (361)
T ss_dssp             CCCCBCHHHHTTSCTTCEEEETTCT
T ss_pred             CCeecCHHHHhhCCCCCEEEEEecC
Confidence                 46788999999999998754

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=98.51  E-value=2.2e-07  Score=92.31  Aligned_cols=155  Identities=21%  Similarity=0.184  Sum_probs=106.7

Q ss_pred             CCCcCCCceeEEEEEeCCCCCCCCCCCEEEecccccccCCCCCCCcceeEEEecCCceeeCCCCCCHHhHhccchhHHHH
Q 016265          142 LPTVPGYDVAGVVVKVGTQVKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETA  221 (392)
Q Consensus       142 ~p~v~G~e~~G~V~~vG~~v~~~~vGdrV~~~~~~~~~~~~~~~G~~a~~~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta  221 (392)
                      +|.++ +++.|+|++.|.+|.++      ....         ..|.+..++....+.+.+.    .+.   .++....++
T Consensus       204 ~p~~~-~~i~GvveetgtGVd~l------~a~~---------~~Gilv~~~~~vn~sVae~----~~r---~l~~~~~s~  260 (494)
T 3ce6_A          204 WTKIA-ESVKGVTEETTTGVLRL------YQFA---------AAGDLAFPAINVNDSVTKS----KFD---NKYGTRHSL  260 (494)
T ss_dssp             HHHHH-HHCCCEEECSHHHHHHH------HHHH---------HTTCCCSCEEECTTSHHHH----TTH---HHHHHHHHH
T ss_pred             chhhh-cCeEEEEEEeCCChhHH------HHHH---------HcCCEEEecCCccHHHHHH----HHh---hhhhhhhhh
Confidence            45555 89999999999888765      1100         1233333222211122210    001   122344567


Q ss_pred             HHHHHhcC--CCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCCccccCCCCccE
Q 016265          222 YEGLERTG--FSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFEDLPEKFDV  299 (392)
Q Consensus       222 ~~al~~~~--~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~~~~~~~D~  299 (392)
                      ++++.+..  ..+|++|+|+| .|.+|+.+++.++. +|++|+++++++.+++.++++|++ +++     +.+..+++|+
T Consensus       261 ~~g~~r~~~~~l~GktV~IiG-~G~IG~~~A~~lka-~Ga~Viv~d~~~~~~~~A~~~Ga~-~~~-----l~e~l~~aDv  332 (494)
T 3ce6_A          261 IDGINRGTDALIGGKKVLICG-YGDVGKGCAEAMKG-QGARVSVTEIDPINALQAMMEGFD-VVT-----VEEAIGDADI  332 (494)
T ss_dssp             HHHHHHHHCCCCTTCEEEEEC-CSHHHHHHHHHHHH-TTCEEEEECSCHHHHHHHHHTTCE-ECC-----HHHHGGGCSE
T ss_pred             hHHHHhccCCCCCcCEEEEEc-cCHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHcCCE-Eec-----HHHHHhCCCE
Confidence            77776543  78999999998 89999999999998 599999999999998889999986 322     2333457999


Q ss_pred             EEecCcc---H-HHHHHhcccCCeEEEEcCCC
Q 016265          300 VYDAIGQ---C-DRAVKAIKEGGTVVALTGAV  327 (392)
Q Consensus       300 vid~~G~---~-~~~~~~l~~~G~iv~~g~~~  327 (392)
                      |++|+|.   + ...++.++++|+++.+|...
T Consensus       333 Vi~atgt~~~i~~~~l~~mk~ggilvnvG~~~  364 (494)
T 3ce6_A          333 VVTATGNKDIIMLEHIKAMKDHAILGNIGHFD  364 (494)
T ss_dssp             EEECSSSSCSBCHHHHHHSCTTCEEEECSSSG
T ss_pred             EEECCCCHHHHHHHHHHhcCCCcEEEEeCCCC
Confidence            9999983   3 48899999999999987643

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=98.41  E-value=4.4e-07  Score=87.93  Aligned_cols=92  Identities=24%  Similarity=0.332  Sum_probs=73.0

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEE-EeCCC-----------------------
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLA-IDYTK-----------------------  287 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~v-i~~~~-----------------------  287 (392)
                      +|++|+|+| +|.+|++++++|+. +|++|++.++++++++.++++|++.+ ++..+                       
T Consensus       171 ~g~~V~ViG-aG~iG~~aa~~a~~-~Ga~V~~~d~~~~~~~~~~~~Ga~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~~  248 (384)
T 1l7d_A          171 PPARVLVFG-VGVAGLQAIATAKR-LGAVVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQA  248 (384)
T ss_dssp             CCCEEEEEC-CSHHHHHHHHHHHH-TTCEEEEECSCSTTHHHHHHTTCEECCC-----------------------CCHH
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHcCCeEEeecccccccccccccchhhcCHHHHhhhH
Confidence            689999998 89999999999998 59998888999999999999998765 23311                       


Q ss_pred             CccccCCCCccEEEecC---c--c----HHHHHHhcccCCeEEEEcC
Q 016265          288 DNFEDLPEKFDVVYDAI---G--Q----CDRAVKAIKEGGTVVALTG  325 (392)
Q Consensus       288 ~~~~~~~~~~D~vid~~---G--~----~~~~~~~l~~~G~iv~~g~  325 (392)
                      ..+.+...++|+||+|+   |  .    .+..++.|++++.++.++.
T Consensus       249 ~~l~~~~~~aDvVi~~~~~pg~~~~~li~~~~l~~mk~g~vivdva~  295 (384)
T 1l7d_A          249 EAVLKELVKTDIAITTALIPGKPAPVLITEEMVTKMKPGSVIIDLAV  295 (384)
T ss_dssp             HHHHHHHTTCSEEEECCCCTTSCCCCCSCHHHHTTSCTTCEEEETTG
T ss_pred             HHHHHHhCCCCEEEECCccCCCCCCeeeCHHHHhcCCCCCEEEEEec
Confidence            00333345799999998   5  2    2788999999999999974

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=98.37  E-value=1.4e-06  Score=78.48  Aligned_cols=117  Identities=15%  Similarity=0.184  Sum_probs=81.2

Q ss_pred             HHHHHHHhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhc----CCcEEEeCCCCcccc---
Q 016265          220 TAYEGLERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSL----GADLAIDYTKDNFED---  292 (392)
Q Consensus       220 ta~~al~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~----G~~~vi~~~~~~~~~---  292 (392)
                      .+.+.+....+.+|++||.+| +| .|..+.++++.  +.+++.++.+++.++.+++.    |.+.-+.....++.+   
T Consensus        79 ~~~~~~~~~~~~~~~~vldiG-~G-~G~~~~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~  154 (248)
T 2yvl_A           79 DSFYIALKLNLNKEKRVLEFG-TG-SGALLAVLSEV--AGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEV  154 (248)
T ss_dssp             HHHHHHHHTTCCTTCEEEEEC-CT-TSHHHHHHHHH--SSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSCC
T ss_pred             hHHHHHHhcCCCCCCEEEEeC-CC-ccHHHHHHHHh--CCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhccc
Confidence            344666778889999999998 77 69999999986  78899999999988887653    431111111111111   


Q ss_pred             CCCCccEEEecCc----cHHHHHHhcccCCeEEEEcCCCCCCceEEEEeecHHHHHHHHHHHHCC
Q 016265          293 LPEKFDVVYDAIG----QCDRAVKAIKEGGTVVALTGAVTPPGFRFVVTSNGEVLKKLNPYLESG  353 (392)
Q Consensus       293 ~~~~~D~vid~~G----~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~g  353 (392)
                      ..+++|+|+...+    .++.+.++|++||+++....             ....+.++.+++.++
T Consensus       155 ~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~-------------~~~~~~~~~~~l~~~  206 (248)
T 2yvl_A          155 PEGIFHAAFVDVREPWHYLEKVHKSLMEGAPVGFLLP-------------TANQVIKLLESIENY  206 (248)
T ss_dssp             CTTCBSEEEECSSCGGGGHHHHHHHBCTTCEEEEEES-------------SHHHHHHHHHHSTTT
T ss_pred             CCCcccEEEECCcCHHHHHHHHHHHcCCCCEEEEEeC-------------CHHHHHHHHHHHHhh
Confidence            1247999998766    35889999999999986632             234455666666655

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=98.34  E-value=5.1e-07  Score=87.26  Aligned_cols=92  Identities=18%  Similarity=0.294  Sum_probs=73.2

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHh-cCCcEEEeC-CCCccccCCCCccEEEecCc--c-
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKS-LGADLAIDY-TKDNFEDLPEKFDVVYDAIG--Q-  306 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~-~G~~~vi~~-~~~~~~~~~~~~D~vid~~G--~-  306 (392)
                      +|++|+|+| +|.+|+++++.++. +|++|++.++++++++.+++ +|++...+. ...++.+...++|+||+|++  . 
T Consensus       167 ~g~~V~ViG-~G~iG~~~a~~a~~-~Ga~V~~~d~~~~~l~~~~~~~g~~~~~~~~~~~~l~~~l~~aDvVi~~~~~p~~  244 (377)
T 2vhw_A          167 EPADVVVIG-AGTAGYNAARIANG-MGATVTVLDINIDKLRQLDAEFCGRIHTRYSSAYELEGAVKRADLVIGAVLVPGA  244 (377)
T ss_dssp             CCCEEEEEC-CSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHHTTTSSEEEECCHHHHHHHHHHCSEEEECCCCTTS
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHh-CCCEEEEEeCCHHHHHHHHHhcCCeeEeccCCHHHHHHHHcCCCEEEECCCcCCC
Confidence            589999999 69999999999998 59999999999999888876 787643322 22334444457899999986  2 


Q ss_pred             ------HHHHHHhcccCCeEEEEcC
Q 016265          307 ------CDRAVKAIKEGGTVVALTG  325 (392)
Q Consensus       307 ------~~~~~~~l~~~G~iv~~g~  325 (392)
                            .+..++.++++|+++.++.
T Consensus       245 ~t~~li~~~~l~~mk~g~~iV~va~  269 (377)
T 2vhw_A          245 KAPKLVSNSLVAHMKPGAVLVDIAI  269 (377)
T ss_dssp             CCCCCBCHHHHTTSCTTCEEEEGGG
T ss_pred             CCcceecHHHHhcCCCCcEEEEEec
Confidence                  4788999999999999973

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=98.30  E-value=8.6e-07  Score=85.43  Aligned_cols=93  Identities=23%  Similarity=0.362  Sum_probs=71.8

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHh-cCCcEEEeC-CCCccccCCCCccEEEecCcc---
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKS-LGADLAIDY-TKDNFEDLPEKFDVVYDAIGQ---  306 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~-~G~~~vi~~-~~~~~~~~~~~~D~vid~~G~---  306 (392)
                      .+++|+|+|+ |++|+.+++.++. .|++|+++++++++++.+++ +|.+...+. ...++.+..+++|+||+|+|.   
T Consensus       165 ~~~~V~ViGa-G~iG~~~a~~l~~-~Ga~V~~~d~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~~~~~DvVi~~~g~~~~  242 (369)
T 2eez_A          165 APASVVILGG-GTVGTNAAKIALG-MGAQVTILDVNHKRLQYLDDVFGGRVITLTATEANIKKSVQHADLLIGAVLVPGA  242 (369)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHHTTTSEEEEECCHHHHHHHHHHCSEEEECCC----
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHh-CCCEEEEEECCHHHHHHHHHhcCceEEEecCCHHHHHHHHhCCCEEEECCCCCcc
Confidence            4689999995 9999999999998 59999999999998888765 777643332 223344444579999999872   


Q ss_pred             ------HHHHHHhcccCCeEEEEcCC
Q 016265          307 ------CDRAVKAIKEGGTVVALTGA  326 (392)
Q Consensus       307 ------~~~~~~~l~~~G~iv~~g~~  326 (392)
                            .+.+++.++++|+++.++..
T Consensus       243 ~~~~li~~~~l~~mk~gg~iV~v~~~  268 (369)
T 2eez_A          243 KAPKLVTRDMLSLMKEGAVIVDVAVD  268 (369)
T ss_dssp             ---CCSCHHHHTTSCTTCEEEECC--
T ss_pred             ccchhHHHHHHHhhcCCCEEEEEecC
Confidence                  36788999999999998654

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=98.28  E-value=1e-06  Score=85.74  Aligned_cols=92  Identities=24%  Similarity=0.402  Sum_probs=72.0

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEE-eCC-------------CC--------c
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAI-DYT-------------KD--------N  289 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi-~~~-------------~~--------~  289 (392)
                      +|++|+|+| +|.+|++++++|+. +|++|+++++++++++.++++|++.+. +..             ..        .
T Consensus       171 ~g~~V~ViG-aG~iG~~aa~~a~~-~Ga~V~v~D~~~~~~~~~~~lGa~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  248 (401)
T 1x13_A          171 PPAKVMVIG-AGVAGLAAIGAANS-LGAIVRAFDTRPEVKEQVQSMGAEFLELDFKEEAGSGDGYAKVMSDAFIKAEMEL  248 (401)
T ss_dssp             CCCEEEEEC-CSHHHHHHHHHHHH-TTCEEEEECSCGGGHHHHHHTTCEECCC--------CCHHHHHHSHHHHHHHHHH
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHH-CCCEEEEEcCCHHHHHHHHHcCCEEEEecccccccccccchhhccHHHHHHHHHH
Confidence            588999998 89999999999998 599999999999999999999987542 211             00        1


Q ss_pred             cccCCCCccEEEecC---c----c-H-HHHHHhcccCCeEEEEcC
Q 016265          290 FEDLPEKFDVVYDAI---G----Q-C-DRAVKAIKEGGTVVALTG  325 (392)
Q Consensus       290 ~~~~~~~~D~vid~~---G----~-~-~~~~~~l~~~G~iv~~g~  325 (392)
                      +.+...++|+||+++   |    . + +.+++.|+++|.++.++.
T Consensus       249 l~e~~~~aDvVI~~~~~pg~~ap~li~~~~l~~mk~g~vIVdva~  293 (401)
T 1x13_A          249 FAAQAKEVDIIVTTALIPGKPAPKLITREMVDSMKAGSVIVDLAA  293 (401)
T ss_dssp             HHHHHHHCSEEEECCCCTTSCCCCCBCHHHHHTSCTTCEEEETTG
T ss_pred             HHHHhCCCCEEEECCccCCCCCCeeeCHHHHhcCCCCcEEEEEcC
Confidence            233334789999995   3    1 2 689999999999999974

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=98.01  E-value=5.1e-06  Score=79.56  Aligned_cols=92  Identities=30%  Similarity=0.436  Sum_probs=72.4

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEE-e--------CCC-----------Cccc
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAI-D--------YTK-----------DNFE  291 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi-~--------~~~-----------~~~~  291 (392)
                      ++.+|+|+| +|.+|+.++++++.+ |++|++.++++++++.++++|++.+- +        +..           ..+.
T Consensus       183 ~~~kV~ViG-~G~iG~~aa~~a~~l-Ga~V~v~D~~~~~l~~~~~lGa~~~~l~~~~~~~~gya~~~~~~~~~~~~~~l~  260 (381)
T 3p2y_A          183 KPASALVLG-VGVAGLQALATAKRL-GAKTTGYDVRPEVAEQVRSVGAQWLDLGIDAAGEGGYARELSEAERAQQQQALE  260 (381)
T ss_dssp             CCCEEEEES-CSHHHHHHHHHHHHH-TCEEEEECSSGGGHHHHHHTTCEECCCC-------------CHHHHHHHHHHHH
T ss_pred             CCCEEEEEC-chHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHcCCeEEeccccccccccchhhhhHHHHhhhHHHHH
Confidence            678999998 899999999999995 99999999999999999999986431 0        000           1223


Q ss_pred             cCCCCccEEEecC---c----c--HHHHHHhcccCCeEEEEcC
Q 016265          292 DLPEKFDVVYDAI---G----Q--CDRAVKAIKEGGTVVALTG  325 (392)
Q Consensus       292 ~~~~~~D~vid~~---G----~--~~~~~~~l~~~G~iv~~g~  325 (392)
                      +...++|+||.++   |    .  .+..++.+++|+.+|.++.
T Consensus       261 e~l~~aDIVI~tv~iPg~~ap~Lvt~emv~~MkpGsVIVDvA~  303 (381)
T 3p2y_A          261 DAITKFDIVITTALVPGRPAPRLVTAAAATGMQPGSVVVDLAG  303 (381)
T ss_dssp             HHHTTCSEEEECCCCTTSCCCCCBCHHHHHTSCTTCEEEETTG
T ss_pred             HHHhcCCEEEECCCCCCcccceeecHHHHhcCCCCcEEEEEeC
Confidence            3346899999986   2    1  3799999999999999853

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=98.00  E-value=7.1e-06  Score=79.17  Aligned_cols=92  Identities=26%  Similarity=0.309  Sum_probs=71.8

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEe-------------CCC-----------
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAID-------------YTK-----------  287 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~-------------~~~-----------  287 (392)
                      ++.+|+|+| +|.+|+.++++++.+ |++|++.+.++.+++.++++|++.+..             |..           
T Consensus       189 ~~~kV~ViG-~G~iG~~aa~~a~~l-Ga~V~v~D~~~~~l~~~~~~G~~~~~~~~~~~~d~~~~~~ya~e~s~~~~~~~~  266 (405)
T 4dio_A          189 PAAKIFVMG-AGVAGLQAIATARRL-GAVVSATDVRPAAKEQVASLGAKFIAVEDEEFKAAETAGGYAKEMSGEYQVKQA  266 (405)
T ss_dssp             CCCEEEEEC-CSHHHHHHHHHHHHT-TCEEEEECSSTTHHHHHHHTTCEECCCCC-----------------CHHHHHHH
T ss_pred             CCCEEEEEC-CcHHHHHHHHHHHHC-CCEEEEEcCCHHHHHHHHHcCCceeecccccccccccccchhhhcchhhhhhhH
Confidence            578999998 899999999999995 999999999999999999999863221             110           


Q ss_pred             CccccCCCCccEEEecCc---------cHHHHHHhcccCCeEEEEcC
Q 016265          288 DNFEDLPEKFDVVYDAIG---------QCDRAVKAIKEGGTVVALTG  325 (392)
Q Consensus       288 ~~~~~~~~~~D~vid~~G---------~~~~~~~~l~~~G~iv~~g~  325 (392)
                      ..+.+...++|+||.|+.         -.+..++.+++|+.||.++.
T Consensus       267 ~~l~e~l~~aDVVI~tvlipg~~ap~Lvt~emv~~Mk~GsVIVDvA~  313 (405)
T 4dio_A          267 ALVAEHIAKQDIVITTALIPGRPAPRLVTREMLDSMKPGSVVVDLAV  313 (405)
T ss_dssp             HHHHHHHHTCSEEEECCCCSSSCCCCCBCHHHHTTSCTTCEEEETTG
T ss_pred             hHHHHHhcCCCEEEECCcCCCCCCCEEecHHHHhcCCCCCEEEEEeC
Confidence            012222357899999953         13899999999999999863

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=97.93  E-value=2.9e-05  Score=71.84  Aligned_cols=95  Identities=16%  Similarity=0.153  Sum_probs=71.1

Q ss_pred             hcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhc----CCcE--EEeCCCCccccCCCCccEE
Q 016265          227 RTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSL----GADL--AIDYTKDNFEDLPEKFDVV  300 (392)
Q Consensus       227 ~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~----G~~~--vi~~~~~~~~~~~~~~D~v  300 (392)
                      .+++++|++||.+| +|+.|..++.+|+. .|++|+.++.+++.++.+++.    |.+.  ++..+...+.  .+.||+|
T Consensus       117 la~l~~g~rVLDIG-cG~G~~ta~~lA~~-~ga~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa~~l~--d~~FDvV  192 (298)
T 3fpf_A          117 LGRFRRGERAVFIG-GGPLPLTGILLSHV-YGMRVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDETVID--GLEFDVL  192 (298)
T ss_dssp             HTTCCTTCEEEEEC-CCSSCHHHHHHHHT-TCCEEEEEESSHHHHHHHHHHHHHHTCCSEEEEESCGGGGG--GCCCSEE
T ss_pred             HcCCCCcCEEEEEC-CCccHHHHHHHHHc-cCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEECchhhCC--CCCcCEE
Confidence            47889999999998 88878888888887 599999999999988887653    5422  2222222222  3579999


Q ss_pred             EecCc------cHHHHHHhcccCCeEEEEcC
Q 016265          301 YDAIG------QCDRAVKAIKEGGTVVALTG  325 (392)
Q Consensus       301 id~~G------~~~~~~~~l~~~G~iv~~g~  325 (392)
                      +.+..      .++.+.+.|+|||+++....
T Consensus       193 ~~~a~~~d~~~~l~el~r~LkPGG~Lvv~~~  223 (298)
T 3fpf_A          193 MVAALAEPKRRVFRNIHRYVDTETRIIYRTY  223 (298)
T ss_dssp             EECTTCSCHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred             EECCCccCHHHHHHHHHHHcCCCcEEEEEcC
Confidence            97643      25789999999999987643

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=97.89  E-value=3.4e-06  Score=69.77  Aligned_cols=102  Identities=12%  Similarity=0.098  Sum_probs=72.3

Q ss_pred             HHHHHHHhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHH-HHhcCCcEEEeCCCCccccCCCCcc
Q 016265          220 TAYEGLERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEF-LKSLGADLAIDYTKDNFEDLPEKFD  298 (392)
Q Consensus       220 ta~~al~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~-~~~~G~~~vi~~~~~~~~~~~~~~D  298 (392)
                      .++++++.+....+++|+|+| +|.+|.+.++.++. .|.++++.++++++.+. ++++|.+. ....  ++.+..+++|
T Consensus         8 v~~~a~~~~~~~~~~~v~iiG-~G~iG~~~a~~l~~-~g~~v~v~~r~~~~~~~~a~~~~~~~-~~~~--~~~~~~~~~D   82 (144)
T 3oj0_A            8 IPSIVYDIVRKNGGNKILLVG-NGMLASEIAPYFSY-PQYKVTVAGRNIDHVRAFAEKYEYEY-VLIN--DIDSLIKNND   82 (144)
T ss_dssp             HHHHHHHHHHHHCCCEEEEEC-CSHHHHHHGGGCCT-TTCEEEEEESCHHHHHHHHHHHTCEE-EECS--CHHHHHHTCS
T ss_pred             HHHHHHHHHHhccCCEEEEEC-CCHHHHHHHHHHHh-CCCEEEEEcCCHHHHHHHHHHhCCce-Eeec--CHHHHhcCCC
Confidence            367777665555699999999 79999999988877 59997788888887654 56777543 2222  2333335789


Q ss_pred             EEEecCccH--HHHHHhcccCCeEEEEcCC
Q 016265          299 VVYDAIGQC--DRAVKAIKEGGTVVALTGA  326 (392)
Q Consensus       299 ~vid~~G~~--~~~~~~l~~~G~iv~~g~~  326 (392)
                      +||.|++..  ....+.+++++.++.++.+
T Consensus        83 ivi~at~~~~~~~~~~~l~~g~~vid~~~p  112 (144)
T 3oj0_A           83 VIITATSSKTPIVEERSLMPGKLFIDLGNP  112 (144)
T ss_dssp             EEEECSCCSSCSBCGGGCCTTCEEEECCSS
T ss_pred             EEEEeCCCCCcEeeHHHcCCCCEEEEccCC
Confidence            999999832  1122678888888888754

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*

Probab=97.80  E-value=8.1e-05  Score=72.05  Aligned_cols=100  Identities=19%  Similarity=0.242  Sum_probs=77.8

Q ss_pred             HHHHHHHhc--CCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCCccccCCCCc
Q 016265          220 TAYEGLERT--GFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFEDLPEKF  297 (392)
Q Consensus       220 ta~~al~~~--~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~~~~~~~  297 (392)
                      ..+.++.++  ..-.|++|+|+| .|.+|..+++.++. +|++|++++.++.+...+...|... .     ++.+.....
T Consensus       205 s~~~gi~rat~~~L~GktV~ViG-~G~IGk~vA~~Lra-~Ga~Viv~D~dp~ra~~A~~~G~~v-~-----~Leeal~~A  276 (435)
T 3gvp_A          205 SILDGLKRTTDMMFGGKQVVVCG-YGEVGKGCCAALKA-MGSIVYVTEIDPICALQACMDGFRL-V-----KLNEVIRQV  276 (435)
T ss_dssp             HHHHHHHHHHCCCCTTCEEEEEC-CSHHHHHHHHHHHH-TTCEEEEECSCHHHHHHHHHTTCEE-C-----CHHHHTTTC
T ss_pred             HHHHHHHHhhCceecCCEEEEEe-eCHHHHHHHHHHHH-CCCEEEEEeCChhhhHHHHHcCCEe-c-----cHHHHHhcC
Confidence            345566443  345899999998 99999999999998 5999999988887777777777532 1     345556688


Q ss_pred             cEEEecCcc---H-HHHHHhcccCCeEEEEcCCC
Q 016265          298 DVVYDAIGQ---C-DRAVKAIKEGGTVVALTGAV  327 (392)
Q Consensus       298 D~vid~~G~---~-~~~~~~l~~~G~iv~~g~~~  327 (392)
                      |+++.|+|.   + ...++.|++++.++.++...
T Consensus       277 DIVi~atgt~~lI~~e~l~~MK~gailINvgrg~  310 (435)
T 3gvp_A          277 DIVITCTGNKNVVTREHLDRMKNSCIVCNMGHSN  310 (435)
T ss_dssp             SEEEECSSCSCSBCHHHHHHSCTTEEEEECSSTT
T ss_pred             CEEEECCCCcccCCHHHHHhcCCCcEEEEecCCC
Confidence            999999883   3 58999999999999987554

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=97.76  E-value=8.1e-05  Score=69.15  Aligned_cols=90  Identities=18%  Similarity=0.223  Sum_probs=71.8

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCCccccCCCCccEEEecCc-c--H
Q 016265          231 SAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFEDLPEKFDVVYDAIG-Q--C  307 (392)
Q Consensus       231 ~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~~~~~~~D~vid~~G-~--~  307 (392)
                      -.|++|+|+| .|.+|..+++.++. +|++|++.+++.++.+.++++|+.. ++.  .++.+...+.|+|+.++. .  .
T Consensus       153 l~g~~v~IiG-~G~iG~~~a~~l~~-~G~~V~~~dr~~~~~~~~~~~g~~~-~~~--~~l~~~l~~aDvVi~~~p~~~i~  227 (293)
T 3d4o_A          153 IHGANVAVLG-LGRVGMSVARKFAA-LGAKVKVGARESDLLARIAEMGMEP-FHI--SKAAQELRDVDVCINTIPALVVT  227 (293)
T ss_dssp             STTCEEEEEC-CSHHHHHHHHHHHH-TTCEEEEEESSHHHHHHHHHTTSEE-EEG--GGHHHHTTTCSEEEECCSSCCBC
T ss_pred             CCCCEEEEEe-eCHHHHHHHHHHHh-CCCEEEEEECCHHHHHHHHHCCCee-cCh--hhHHHHhcCCCEEEECCChHHhC
Confidence            4689999998 99999999999998 5999999999888877777888753 322  234444568999999986 2  2


Q ss_pred             HHHHHhcccCCeEEEEcC
Q 016265          308 DRAVKAIKEGGTVVALTG  325 (392)
Q Consensus       308 ~~~~~~l~~~G~iv~~g~  325 (392)
                      +..++.+++++.++.++.
T Consensus       228 ~~~l~~mk~~~~lin~ar  245 (293)
T 3d4o_A          228 ANVLAEMPSHTFVIDLAS  245 (293)
T ss_dssp             HHHHHHSCTTCEEEECSS
T ss_pred             HHHHHhcCCCCEEEEecC
Confidence            567889999999998875

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=97.73  E-value=0.00013  Score=66.94  Aligned_cols=100  Identities=16%  Similarity=0.202  Sum_probs=69.5

Q ss_pred             HHHHhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhc-CCeEEEEeCCcccHHHHHh----cCCcEEEeCCCCcccc-C-CC
Q 016265          223 EGLERTGFSAGKSILVLNGSGGVGSLVIQLAKQVF-GASRVAATSSTRNLEFLKS----LGADLAIDYTKDNFED-L-PE  295 (392)
Q Consensus       223 ~al~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~-G~~vv~~~~~~~~~~~~~~----~G~~~vi~~~~~~~~~-~-~~  295 (392)
                      ..+....+.+|++||-.| +|. |..++.+++.+. +.+++.++.+++.++.+++    .|...-+.....++.+ . .+
T Consensus       103 ~i~~~~~~~~~~~VLDiG-~G~-G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~  180 (277)
T 1o54_A          103 FIAMMLDVKEGDRIIDTG-VGS-GAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFDEK  180 (277)
T ss_dssp             HHHHHTTCCTTCEEEEEC-CTT-SHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCCSCC
T ss_pred             HHHHHhCCCCCCEEEEEC-CcC-CHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHcccCC
Confidence            345667889999999998 666 899999998742 4688888989888877754    3541112211122222 2 24


Q ss_pred             CccEEEecCc----cHHHHHHhcccCCeEEEEc
Q 016265          296 KFDVVYDAIG----QCDRAVKAIKEGGTVVALT  324 (392)
Q Consensus       296 ~~D~vid~~G----~~~~~~~~l~~~G~iv~~g  324 (392)
                      .+|+|+....    .++.+.++|++||+++...
T Consensus       181 ~~D~V~~~~~~~~~~l~~~~~~L~pgG~l~~~~  213 (277)
T 1o54_A          181 DVDALFLDVPDPWNYIDKCWEALKGGGRFATVC  213 (277)
T ss_dssp             SEEEEEECCSCGGGTHHHHHHHEEEEEEEEEEE
T ss_pred             ccCEEEECCcCHHHHHHHHHHHcCCCCEEEEEe
Confidence            6999997654    3688999999999998764

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=97.71  E-value=0.00014  Score=57.12  Aligned_cols=90  Identities=22%  Similarity=0.231  Sum_probs=61.7

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcC-CeEEEEeCCcccHHHHHhcCCcEE-EeCCC-CccccCCCCccEEEecCcc--
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFG-ASRVAATSSTRNLEFLKSLGADLA-IDYTK-DNFEDLPEKFDVVYDAIGQ--  306 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G-~~vv~~~~~~~~~~~~~~~G~~~v-i~~~~-~~~~~~~~~~D~vid~~G~--  306 (392)
                      .+.+|+|+|+ |.+|...++.+.. .| .+++++++++++.+.+...|...+ .|..+ +.+.+..+++|+||+|+|.  
T Consensus         4 ~~~~v~I~G~-G~iG~~~~~~l~~-~g~~~v~~~~r~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~d~vi~~~~~~~   81 (118)
T 3ic5_A            4 MRWNICVVGA-GKIGQMIAALLKT-SSNYSVTVADHDLAALAVLNRMGVATKQVDAKDEAGLAKALGGFDAVISAAPFFL   81 (118)
T ss_dssp             TCEEEEEECC-SHHHHHHHHHHHH-CSSEEEEEEESCHHHHHHHHTTTCEEEECCTTCHHHHHHHTTTCSEEEECSCGGG
T ss_pred             CcCeEEEECC-CHHHHHHHHHHHh-CCCceEEEEeCCHHHHHHHHhCCCcEEEecCCCHHHHHHHHcCCCEEEECCCchh
Confidence            4578999996 9999999998887 48 788888999988888876665543 23332 2233345689999999983  


Q ss_pred             H-HHHHHhcccCCeEEEE
Q 016265          307 C-DRAVKAIKEGGTVVAL  323 (392)
Q Consensus       307 ~-~~~~~~l~~~G~iv~~  323 (392)
                      . .....+.+.+-.++.+
T Consensus        82 ~~~~~~~~~~~g~~~~~~   99 (118)
T 3ic5_A           82 TPIIAKAAKAAGAHYFDL   99 (118)
T ss_dssp             HHHHHHHHHHTTCEEECC
T ss_pred             hHHHHHHHHHhCCCEEEe
Confidence            2 3333344455555443

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=97.64  E-value=0.00015  Score=71.39  Aligned_cols=88  Identities=22%  Similarity=0.196  Sum_probs=71.0

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCCccccCCCCccEEEecCcc---H
Q 016265          231 SAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFEDLPEKFDVVYDAIGQ---C  307 (392)
Q Consensus       231 ~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~~~~~~~D~vid~~G~---~  307 (392)
                      -.|++|+|+| +|++|.+.++.++. .|++|++++.++.+.+.+...|++.      .+..+....+|+++++.|.   +
T Consensus       263 L~GKtVvVtG-aGgIG~aiA~~Laa-~GA~Viv~D~~~~~a~~Aa~~g~dv------~~lee~~~~aDvVi~atG~~~vl  334 (488)
T 3ond_A          263 IAGKVAVVAG-YGDVGKGCAAALKQ-AGARVIVTEIDPICALQATMEGLQV------LTLEDVVSEADIFVTTTGNKDII  334 (488)
T ss_dssp             CTTCEEEEEC-CSHHHHHHHHHHHH-TTCEEEEECSCHHHHHHHHHTTCEE------CCGGGTTTTCSEEEECSSCSCSB
T ss_pred             ccCCEEEEEC-CCHHHHHHHHHHHH-CCCEEEEEcCCHHHHHHHHHhCCcc------CCHHHHHHhcCEEEeCCCChhhh
Confidence            4799999998 77999999999998 5999999988888887777777632      1234455689999999983   2


Q ss_pred             -HHHHHhcccCCeEEEEcCC
Q 016265          308 -DRAVKAIKEGGTVVALTGA  326 (392)
Q Consensus       308 -~~~~~~l~~~G~iv~~g~~  326 (392)
                       ...++.+++++.++..|..
T Consensus       335 ~~e~l~~mk~gaiVvNaG~~  354 (488)
T 3ond_A          335 MLDHMKKMKNNAIVCNIGHF  354 (488)
T ss_dssp             CHHHHTTSCTTEEEEESSST
T ss_pred             hHHHHHhcCCCeEEEEcCCC
Confidence             5688999999999888754

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=97.62  E-value=0.00015  Score=67.45  Aligned_cols=92  Identities=15%  Similarity=0.266  Sum_probs=72.5

Q ss_pred             CCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCCccccCCCCccEEEecCc-c-H
Q 016265          230 FSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFEDLPEKFDVVYDAIG-Q-C  307 (392)
Q Consensus       230 ~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~~~~~~~D~vid~~G-~-~  307 (392)
                      --.|.+|+|+| .|.+|..+++.++. +|++|++.+++.++.+.++++|+. +++.  .++.+..++.|+|+.+++ . +
T Consensus       154 ~l~g~~v~IiG-~G~iG~~~a~~l~~-~G~~V~~~d~~~~~~~~~~~~g~~-~~~~--~~l~~~l~~aDvVi~~~p~~~i  228 (300)
T 2rir_A          154 TIHGSQVAVLG-LGRTGMTIARTFAA-LGANVKVGARSSAHLARITEMGLV-PFHT--DELKEHVKDIDICINTIPSMIL  228 (300)
T ss_dssp             CSTTSEEEEEC-CSHHHHHHHHHHHH-TTCEEEEEESSHHHHHHHHHTTCE-EEEG--GGHHHHSTTCSEEEECCSSCCB
T ss_pred             CCCCCEEEEEc-ccHHHHHHHHHHHH-CCCEEEEEECCHHHHHHHHHCCCe-EEch--hhHHHHhhCCCEEEECCChhhh
Confidence            34689999998 89999999999998 599999999988887777777764 3332  234455568999999987 2 2


Q ss_pred             -HHHHHhcccCCeEEEEcCC
Q 016265          308 -DRAVKAIKEGGTVVALTGA  326 (392)
Q Consensus       308 -~~~~~~l~~~G~iv~~g~~  326 (392)
                       +..++.+++++.++.++..
T Consensus       229 ~~~~~~~mk~g~~lin~a~g  248 (300)
T 2rir_A          229 NQTVLSSMTPKTLILDLASR  248 (300)
T ss_dssp             CHHHHTTSCTTCEEEECSST
T ss_pred             CHHHHHhCCCCCEEEEEeCC
Confidence             5678899999999988753

>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus}

Probab=97.55  E-value=0.00024  Score=68.90  Aligned_cols=99  Identities=19%  Similarity=0.169  Sum_probs=75.5

Q ss_pred             HHHHHHh--cCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCCccccCCCCcc
Q 016265          221 AYEGLER--TGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFEDLPEKFD  298 (392)
Q Consensus       221 a~~al~~--~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~~~~~~~D  298 (392)
                      .+.++.+  ...-.|++|+|+| .|.+|..+++.++. +|++|++++.++.+...+...|... .     ++.+..+..|
T Consensus       233 lvdgI~Ratg~~L~GKTVgVIG-~G~IGr~vA~~lra-fGa~Viv~d~dp~~a~~A~~~G~~v-v-----~LeElL~~AD  304 (464)
T 3n58_A          233 LVDGIRRGTDVMMAGKVAVVCG-YGDVGKGSAQSLAG-AGARVKVTEVDPICALQAAMDGFEV-V-----TLDDAASTAD  304 (464)
T ss_dssp             HHHHHHHHHCCCCTTCEEEEEC-CSHHHHHHHHHHHH-TTCEEEEECSSHHHHHHHHHTTCEE-C-----CHHHHGGGCS
T ss_pred             HHHHHHHhcCCcccCCEEEEEC-cCHHHHHHHHHHHH-CCCEEEEEeCCcchhhHHHhcCcee-c-----cHHHHHhhCC
Confidence            4455543  2356899999998 99999999999998 6999999988777666666667642 2     2344455789


Q ss_pred             EEEecCcc---H-HHHHHhcccCCeEEEEcCCC
Q 016265          299 VVYDAIGQ---C-DRAVKAIKEGGTVVALTGAV  327 (392)
Q Consensus       299 ~vid~~G~---~-~~~~~~l~~~G~iv~~g~~~  327 (392)
                      +|+.++|.   + ...++.|++++.++.+|...
T Consensus       305 IVv~atgt~~lI~~e~l~~MK~GAILINvGRgd  337 (464)
T 3n58_A          305 IVVTTTGNKDVITIDHMRKMKDMCIVGNIGHFD  337 (464)
T ss_dssp             EEEECCSSSSSBCHHHHHHSCTTEEEEECSSST
T ss_pred             EEEECCCCccccCHHHHhcCCCCeEEEEcCCCC
Confidence            99999873   2 78999999999999887543

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=97.53  E-value=0.00048  Score=57.31  Aligned_cols=76  Identities=22%  Similarity=0.302  Sum_probs=55.5

Q ss_pred             CCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHH-hcCCcEEE-eCCCCc-cccC-CCCccEEEecC
Q 016265          229 GFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLK-SLGADLAI-DYTKDN-FEDL-PEKFDVVYDAI  304 (392)
Q Consensus       229 ~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~-~~G~~~vi-~~~~~~-~~~~-~~~~D~vid~~  304 (392)
                      ...++++|+|+| +|.+|+..++.++. .|.+|+++++++++.+.++ +.|...+. +..+.. +.+. .+++|+||.|+
T Consensus        15 ~~~~~~~v~IiG-~G~iG~~la~~L~~-~g~~V~vid~~~~~~~~~~~~~g~~~~~~d~~~~~~l~~~~~~~ad~Vi~~~   92 (155)
T 2g1u_A           15 KKQKSKYIVIFG-CGRLGSLIANLASS-SGHSVVVVDKNEYAFHRLNSEFSGFTVVGDAAEFETLKECGMEKADMVFAFT   92 (155)
T ss_dssp             --CCCCEEEEEC-CSHHHHHHHHHHHH-TTCEEEEEESCGGGGGGSCTTCCSEEEESCTTSHHHHHTTTGGGCSEEEECS
T ss_pred             cccCCCcEEEEC-CCHHHHHHHHHHHh-CCCeEEEEECCHHHHHHHHhcCCCcEEEecCCCHHHHHHcCcccCCEEEEEe
Confidence            346789999998 89999999999988 5999999999988888777 67765432 222211 2222 35799999999


Q ss_pred             cc
Q 016265          305 GQ  306 (392)
Q Consensus       305 G~  306 (392)
                      +.
T Consensus        93 ~~   94 (155)
T 2g1u_A           93 ND   94 (155)
T ss_dssp             SC
T ss_pred             CC
Confidence            84

>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}

Probab=97.48  E-value=0.00034  Score=64.12  Aligned_cols=93  Identities=17%  Similarity=0.258  Sum_probs=66.1

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHH-HhcCCcEE-E--eCCCCc-ccc-------CCCCccE
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFL-KSLGADLA-I--DYTKDN-FED-------LPEKFDV  299 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~-~~~G~~~v-i--~~~~~~-~~~-------~~~~~D~  299 (392)
                      .|+++||+||++++|.+.++.... .|++|+++++++++++.+ +++|.... +  |..+.. ..+       .-+++|+
T Consensus        28 ~gKvalVTGas~GIG~aiA~~la~-~Ga~V~i~~r~~~~l~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~iDi  106 (273)
T 4fgs_A           28 NAKIAVITGATSGIGLAAAKRFVA-EGARVFITGRRKDVLDAAIAEIGGGAVGIQADSANLAELDRLYEKVKAEAGRIDV  106 (273)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHCTTCEEEECCTTCHHHHHHHHHHHHHHHSCEEE
T ss_pred             CCCEEEEeCcCCHHHHHHHHHHHH-CCCEEEEEECCHHHHHHHHHHcCCCeEEEEecCCCHHHHHHHHHHHHHHcCCCCE
Confidence            689999999999999997777666 499999999998887655 56774432 2  322211 111       1247999


Q ss_pred             EEecCcc----------------------------HHHHHHhcccCCeEEEEcC
Q 016265          300 VYDAIGQ----------------------------CDRAVKAIKEGGTVVALTG  325 (392)
Q Consensus       300 vid~~G~----------------------------~~~~~~~l~~~G~iv~~g~  325 (392)
                      ++++.|.                            .+.++..|+++|+||.++.
T Consensus       107 LVNNAG~~~~~~~~~~~~e~w~~~~~vNl~g~~~~~~~~~p~m~~~G~IInisS  160 (273)
T 4fgs_A          107 LFVNAGGGSMLPLGEVTEEQYDDTFDRNVKGVLFTVQKALPLLARGSSVVLTGS  160 (273)
T ss_dssp             EEECCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEECC
T ss_pred             EEECCCCCCCCChhhccHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCeEEEEee
Confidence            9998871                            1456667888999998854

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=97.48  E-value=0.00047  Score=61.34  Aligned_cols=94  Identities=19%  Similarity=0.293  Sum_probs=67.8

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCC-cEEE-eCCCCccccCCCCccEEEecCcc---
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGA-DLAI-DYTKDNFEDLPEKFDVVYDAIGQ---  306 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~-~~vi-~~~~~~~~~~~~~~D~vid~~G~---  306 (392)
                      .|.+|||+||+|++|...+..+.. .|.+|+++++++++.+.+.+.+. ..+. |.. +.+.+.-+++|+||.+.|.   
T Consensus        20 ~~~~ilVtGatG~iG~~l~~~L~~-~G~~V~~~~R~~~~~~~~~~~~~~~~~~~Dl~-~~~~~~~~~~D~vi~~ag~~~~   97 (236)
T 3e8x_A           20 QGMRVLVVGANGKVARYLLSELKN-KGHEPVAMVRNEEQGPELRERGASDIVVANLE-EDFSHAFASIDAVVFAAGSGPH   97 (236)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHH-TTCEEEEEESSGGGHHHHHHTTCSEEEECCTT-SCCGGGGTTCSEEEECCCCCTT
T ss_pred             CCCeEEEECCCChHHHHHHHHHHh-CCCeEEEEECChHHHHHHHhCCCceEEEcccH-HHHHHHHcCCCEEEECCCCCCC
Confidence            478999999999999998888777 49999999999999888877776 4322 433 4444445689999999872   


Q ss_pred             -------------HHHHHHhccc--CCeEEEEcCCC
Q 016265          307 -------------CDRAVKAIKE--GGTVVALTGAV  327 (392)
Q Consensus       307 -------------~~~~~~~l~~--~G~iv~~g~~~  327 (392)
                                   ...+++.++.  .++||.++...
T Consensus        98 ~~~~~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS~~  133 (236)
T 3e8x_A           98 TGADKTILIDLWGAIKTIQEAEKRGIKRFIMVSSVG  133 (236)
T ss_dssp             SCHHHHHHTTTHHHHHHHHHHHHHTCCEEEEECCTT
T ss_pred             CCccccchhhHHHHHHHHHHHHHcCCCEEEEEecCC
Confidence                         1233444433  37899887654

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=97.42  E-value=0.002  Score=56.22  Aligned_cols=113  Identities=17%  Similarity=0.142  Sum_probs=77.6

Q ss_pred             HHHhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHh----cCCc---EEEeCCCCccccCCCC
Q 016265          224 GLERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKS----LGAD---LAIDYTKDNFEDLPEK  296 (392)
Q Consensus       224 al~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~----~G~~---~vi~~~~~~~~~~~~~  296 (392)
                      .+....+.++++||-+| +|. |..++.+|+.  +.+++.++.+++.++.+++    +|.+   .++..+-.........
T Consensus        47 ~l~~l~~~~~~~vLDlG-cG~-G~~~~~la~~--~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~  122 (204)
T 3njr_A           47 TLAALAPRRGELLWDIG-GGS-GSVSVEWCLA--GGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALADLPL  122 (204)
T ss_dssp             HHHHHCCCTTCEEEEET-CTT-CHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGTTSCC
T ss_pred             HHHhcCCCCCCEEEEec-CCC-CHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhcccCCC
Confidence            44566788999999998 665 9999999975  8899999999988877654    4544   2333222221112347


Q ss_pred             ccEEEecCc----cHHHHHHhcccCCeEEEEcCCCCCCceEEEEeecHHHHHHHHHHHHCC
Q 016265          297 FDVVYDAIG----QCDRAVKAIKEGGTVVALTGAVTPPGFRFVVTSNGEVLKKLNPYLESG  353 (392)
Q Consensus       297 ~D~vid~~G----~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~g  353 (392)
                      +|+|+...+    .++.+.+.|++||+++....             ..+.+.++.+++++.
T Consensus       123 ~D~v~~~~~~~~~~l~~~~~~LkpgG~lv~~~~-------------~~~~~~~~~~~l~~~  170 (204)
T 3njr_A          123 PEAVFIGGGGSQALYDRLWEWLAPGTRIVANAV-------------TLESETLLTQLHARH  170 (204)
T ss_dssp             CSEEEECSCCCHHHHHHHHHHSCTTCEEEEEEC-------------SHHHHHHHHHHHHHH
T ss_pred             CCEEEECCcccHHHHHHHHHhcCCCcEEEEEec-------------CcccHHHHHHHHHhC
Confidence            999997644    25788889999999976532             345556666666543

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=97.37  E-value=0.0012  Score=55.69  Aligned_cols=98  Identities=23%  Similarity=0.327  Sum_probs=68.8

Q ss_pred             HHHhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHh----cCCc-E-EEeCCC-CccccCCCC
Q 016265          224 GLERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKS----LGAD-L-AIDYTK-DNFEDLPEK  296 (392)
Q Consensus       224 al~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~----~G~~-~-vi~~~~-~~~~~~~~~  296 (392)
                      .+....++++++||-+| +|. |..+..+++...+.+++.++.+++.++.+++    .|.+ . .+..+. ..+....+.
T Consensus        17 ~~~~~~~~~~~~vldiG-~G~-G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~   94 (178)
T 3hm2_A           17 AISALAPKPHETLWDIG-GGS-GSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRIAVQQGAPRAFDDVPDN   94 (178)
T ss_dssp             HHHHHCCCTTEEEEEES-TTT-THHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSEEEECCTTGGGGGCCSC
T ss_pred             HHHHhcccCCCeEEEeC-CCC-CHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCEEEecchHhhhhccCCC
Confidence            34556788999999998 665 9999999987325688888889888877754    4543 2 222222 223333367


Q ss_pred             ccEEEecCc-----cHHHHHHhcccCCeEEEE
Q 016265          297 FDVVYDAIG-----QCDRAVKAIKEGGTVVAL  323 (392)
Q Consensus       297 ~D~vid~~G-----~~~~~~~~l~~~G~iv~~  323 (392)
                      +|+|+....     .++.+.+.|++||+++..
T Consensus        95 ~D~i~~~~~~~~~~~l~~~~~~L~~gG~l~~~  126 (178)
T 3hm2_A           95 PDVIFIGGGLTAPGVFAAAWKRLPVGGRLVAN  126 (178)
T ss_dssp             CSEEEECC-TTCTTHHHHHHHTCCTTCEEEEE
T ss_pred             CCEEEECCcccHHHHHHHHHHhcCCCCEEEEE
Confidence            999997643     268899999999998755

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=97.37  E-value=0.00067  Score=63.35  Aligned_cols=97  Identities=14%  Similarity=0.266  Sum_probs=69.6

Q ss_pred             HHhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhc----CCcEEEeCCCCccccCCCCccEE
Q 016265          225 LERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSL----GADLAIDYTKDNFEDLPEKFDVV  300 (392)
Q Consensus       225 l~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~----G~~~vi~~~~~~~~~~~~~~D~v  300 (392)
                      ++...+++|++||-+| +|. |..+..+++.. |++++.++.+++.++.+++.    |...-+.....++.+..+.+|+|
T Consensus        83 ~~~~~~~~~~~vLDiG-cG~-G~~~~~la~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~fD~v  159 (318)
T 2fk8_A           83 LDKLDLKPGMTLLDIG-CGW-GTTMRRAVERF-DVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFAEPVDRI  159 (318)
T ss_dssp             HTTSCCCTTCEEEEES-CTT-SHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCCCCCSEE
T ss_pred             HHhcCCCCcCEEEEEc-ccc-hHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHCCCCcCEE
Confidence            3456788999999998 665 99999999884 99999999999988877653    43211222222333444679999


Q ss_pred             Eec-----Cc------cHHHHHHhcccCCeEEEEc
Q 016265          301 YDA-----IG------QCDRAVKAIKEGGTVVALT  324 (392)
Q Consensus       301 id~-----~G------~~~~~~~~l~~~G~iv~~g  324 (392)
                      +..     .+      .+..+.++|+|||+++...
T Consensus       160 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  194 (318)
T 2fk8_A          160 VSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQS  194 (318)
T ss_dssp             EEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEE
T ss_pred             EEeChHHhcCHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence            966     32      1467888999999998753

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=97.33  E-value=0.0025  Score=55.18  Aligned_cols=117  Identities=16%  Similarity=0.142  Sum_probs=77.3

Q ss_pred             HHHhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHh----cCCc--EEEeCCCCccccCCCCc
Q 016265          224 GLERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKS----LGAD--LAIDYTKDNFEDLPEKF  297 (392)
Q Consensus       224 al~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~----~G~~--~vi~~~~~~~~~~~~~~  297 (392)
                      .+....++++++||-+| +|. |..++.+++...+.+++.++.+++.++.+++    .|.+  .++..+-.........+
T Consensus        32 ~l~~l~~~~~~~vLDiG-~G~-G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  109 (204)
T 3e05_A           32 TLSKLRLQDDLVMWDIG-AGS-ASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEGLDDLPDP  109 (204)
T ss_dssp             HHHHTTCCTTCEEEEET-CTT-CHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTTCTTSCCC
T ss_pred             HHHHcCCCCCCEEEEEC-CCC-CHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhhhhcCCCC
Confidence            44567889999999998 664 9999999987213788999999988877754    3433  22222221111112569


Q ss_pred             cEEEecCc------cHHHHHHhcccCCeEEEEcCCCCCCceEEEEeecHHHHHHHHHHHHCCCc
Q 016265          298 DVVYDAIG------QCDRAVKAIKEGGTVVALTGAVTPPGFRFVVTSNGEVLKKLNPYLESGKV  355 (392)
Q Consensus       298 D~vid~~G------~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~l  355 (392)
                      |+|+....      .++.+.+.|++||+++....             .....+++.+++.+..+
T Consensus       110 D~i~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~-------------~~~~~~~~~~~l~~~g~  160 (204)
T 3e05_A          110 DRVFIGGSGGMLEEIIDAVDRRLKSEGVIVLNAV-------------TLDTLTKAVEFLEDHGY  160 (204)
T ss_dssp             SEEEESCCTTCHHHHHHHHHHHCCTTCEEEEEEC-------------BHHHHHHHHHHHHHTTC
T ss_pred             CEEEECCCCcCHHHHHHHHHHhcCCCeEEEEEec-------------ccccHHHHHHHHHHCCC
Confidence            99998743      25788899999999986532             23445566666655443

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.30  E-value=0.0017  Score=55.37  Aligned_cols=72  Identities=17%  Similarity=0.241  Sum_probs=57.0

Q ss_pred             CCeEEEEcCCCcHHHHHHHHHHHhc-CCeEEEEeCCcccHHHHHhcCCcEEE-eCCCCc-cccC--CCCccEEEecCcc
Q 016265          233 GKSILVLNGSGGVGSLVIQLAKQVF-GASRVAATSSTRNLEFLKSLGADLAI-DYTKDN-FEDL--PEKFDVVYDAIGQ  306 (392)
Q Consensus       233 g~~VlI~Ga~G~vG~~aiqlak~~~-G~~vv~~~~~~~~~~~~~~~G~~~vi-~~~~~~-~~~~--~~~~D~vid~~G~  306 (392)
                      +++|+|+| .|.+|...++.++. . |.+|++++.++++.+.+++.|...+. |..+.+ +.+.  .+++|+||.+++.
T Consensus        39 ~~~v~IiG-~G~~G~~~a~~L~~-~~g~~V~vid~~~~~~~~~~~~g~~~~~gd~~~~~~l~~~~~~~~ad~vi~~~~~  115 (183)
T 3c85_A           39 HAQVLILG-MGRIGTGAYDELRA-RYGKISLGIEIREEAAQQHRSEGRNVISGDATDPDFWERILDTGHVKLVLLAMPH  115 (183)
T ss_dssp             TCSEEEEC-CSHHHHHHHHHHHH-HHCSCEEEEESCHHHHHHHHHTTCCEEECCTTCHHHHHTBCSCCCCCEEEECCSS
T ss_pred             CCcEEEEC-CCHHHHHHHHHHHh-ccCCeEEEEECCHHHHHHHHHCCCCEEEcCCCCHHHHHhccCCCCCCEEEEeCCC
Confidence            67899998 89999999998887 6 89999999999999989888876544 433322 3333  4679999999984

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=97.23  E-value=0.0018  Score=56.51  Aligned_cols=102  Identities=20%  Similarity=0.209  Sum_probs=70.4

Q ss_pred             HHHHhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcC--CeEEEEeCCcccHHHHHh----cCCcE--EEeCCCCccccCC
Q 016265          223 EGLERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFG--ASRVAATSSTRNLEFLKS----LGADL--AIDYTKDNFEDLP  294 (392)
Q Consensus       223 ~al~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G--~~vv~~~~~~~~~~~~~~----~G~~~--vi~~~~~~~~~~~  294 (392)
                      ..++...+.++++||.+| +| .|..+..+++.. |  .+++.++.+++.++.+++    .|.+.  ++..+-.......
T Consensus        68 ~~~~~~~~~~~~~vLdiG-~G-~G~~~~~l~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~  144 (215)
T 2yxe_A           68 MMCELLDLKPGMKVLEIG-TG-CGYHAAVTAEIV-GEDGLVVSIERIPELAEKAERTLRKLGYDNVIVIVGDGTLGYEPL  144 (215)
T ss_dssp             HHHHHTTCCTTCEEEEEC-CT-TSHHHHHHHHHH-CTTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEESCGGGCCGGG
T ss_pred             HHHHhhCCCCCCEEEEEC-CC-ccHHHHHHHHHh-CCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCCC
Confidence            344566788999999998 66 599999999874 5  789999999888777754    34332  1221111111113


Q ss_pred             CCccEEEecCc---cHHHHHHhcccCCeEEEEcCCC
Q 016265          295 EKFDVVYDAIG---QCDRAVKAIKEGGTVVALTGAV  327 (392)
Q Consensus       295 ~~~D~vid~~G---~~~~~~~~l~~~G~iv~~g~~~  327 (392)
                      +.+|+|+....   ..+.+.++|++||+++..-...
T Consensus       145 ~~fD~v~~~~~~~~~~~~~~~~L~pgG~lv~~~~~~  180 (215)
T 2yxe_A          145 APYDRIYTTAAGPKIPEPLIRQLKDGGKLLMPVGRY  180 (215)
T ss_dssp             CCEEEEEESSBBSSCCHHHHHTEEEEEEEEEEESSS
T ss_pred             CCeeEEEECCchHHHHHHHHHHcCCCcEEEEEECCC
Confidence            47999998755   2478899999999998775433

>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A

Probab=97.23  E-value=0.00087  Score=60.64  Aligned_cols=94  Identities=22%  Similarity=0.366  Sum_probs=63.0

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHH-hcCCcE-EE--eCCCCc-ccc-------CCCCccE
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLK-SLGADL-AI--DYTKDN-FED-------LPEKFDV  299 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~-~~G~~~-vi--~~~~~~-~~~-------~~~~~D~  299 (392)
                      .|+++||+||+|++|.+.++.+.. .|++|+++++++++++.+. ++|... .+  |..+.. +.+       ..+++|+
T Consensus         7 ~gk~~lVTGas~gIG~a~a~~l~~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~   85 (255)
T 4eso_A            7 QGKKAIVIGGTHGMGLATVRRLVE-GGAEVLLTGRNESNIARIREEFGPRVHALRSDIADLNEIAVLGAAAGQTLGAIDL   85 (255)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHGGGEEEEECCTTCHHHHHHHHHHHHHHHSSEEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHHhCCcceEEEccCCCHHHHHHHHHHHHHHhCCCCE
Confidence            578999999999999998777666 4999999999888776554 444332 22  322211 111       1247899


Q ss_pred             EEecCcc----------------------------HHHHHHhcccCCeEEEEcCC
Q 016265          300 VYDAIGQ----------------------------CDRAVKAIKEGGTVVALTGA  326 (392)
Q Consensus       300 vid~~G~----------------------------~~~~~~~l~~~G~iv~~g~~  326 (392)
                      ++++.|.                            .+.++..++++|+||.++..
T Consensus        86 lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS~  140 (255)
T 4eso_A           86 LHINAGVSELEPFDQVSEASYDRQFAVNTKGAFFTVQRLTPLIREGGSIVFTSSV  140 (255)
T ss_dssp             EEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCG
T ss_pred             EEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCEEEEECCh
Confidence            9998761                            12344455678999988643

>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}

Probab=97.20  E-value=0.0017  Score=58.86  Aligned_cols=73  Identities=22%  Similarity=0.200  Sum_probs=50.9

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHH----HhcCCcEEE---eCCCCc-cc-------cCCCC
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFL----KSLGADLAI---DYTKDN-FE-------DLPEK  296 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~----~~~G~~~vi---~~~~~~-~~-------~~~~~  296 (392)
                      .|++++|+||++++|.+.++.... .|++|+++++++++++.+    ++.|.+...   |-.+++ ..       +.-++
T Consensus         8 ~gKvalVTGas~GIG~aia~~la~-~Ga~Vvi~~~~~~~~~~~~~~l~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~   86 (255)
T 4g81_D            8 TGKTALVTGSARGLGFAYAEGLAA-AGARVILNDIRATLLAESVDTLTRKGYDAHGVAFDVTDELAIEAAFSKLDAEGIH   86 (255)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHH-TTCEEEECCSCHHHHHHHHHHHHHTTCCEEECCCCTTCHHHHHHHHHHHHHTTCC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHH-CCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHHCCC
Confidence            589999999999999997777666 499999999988776543    445644322   222211 11       11347


Q ss_pred             ccEEEecCc
Q 016265          297 FDVVYDAIG  305 (392)
Q Consensus       297 ~D~vid~~G  305 (392)
                      +|+++++.|
T Consensus        87 iDiLVNNAG   95 (255)
T 4g81_D           87 VDILINNAG   95 (255)
T ss_dssp             CCEEEECCC
T ss_pred             CcEEEECCC
Confidence            999999987

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*

Probab=97.20  E-value=0.0025  Score=58.71  Aligned_cols=146  Identities=15%  Similarity=0.049  Sum_probs=83.8

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHH-Hhc----CCc-EEEeCCCC-ccccCCCCccEEEec
Q 016265          231 SAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFL-KSL----GAD-LAIDYTKD-NFEDLPEKFDVVYDA  303 (392)
Q Consensus       231 ~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~-~~~----G~~-~vi~~~~~-~~~~~~~~~D~vid~  303 (392)
                      -.|.+++|+||+|++|.+++..+.. .|++++++.++.++.+.+ +++    +.. ...|..+. .+.+..+.+|++|++
T Consensus       117 l~gk~vlVtGaaGGiG~aia~~L~~-~G~~V~i~~R~~~~~~~l~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~DvlVn~  195 (287)
T 1lu9_A          117 VKGKKAVVLAGTGPVGMRSAALLAG-EGAEVVLCGRKLDKAQAAADSVNKRFKVNVTAAETADDASRAEAVKGAHFVFTA  195 (287)
T ss_dssp             CTTCEEEEETCSSHHHHHHHHHHHH-TTCEEEEEESSHHHHHHHHHHHHHHHTCCCEEEECCSHHHHHHHTTTCSEEEEC
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHH-CcCEEEEEECCHHHHHHHHHHHHhcCCcEEEEecCCCHHHHHHHHHhCCEEEEC
Confidence            3688999999999999998887777 499988888887776543 222    322 22344332 233444568999999


Q ss_pred             Cc-cH----HHHHHhcccCCeEEEEcCCCCC-----CceEEE------EeecHHHHHHHHHHHHCCCcccccCCCcccch
Q 016265          304 IG-QC----DRAVKAIKEGGTVVALTGAVTP-----PGFRFV------VTSNGEVLKKLNPYLESGKVKPIIDPKGPFPF  367 (392)
Q Consensus       304 ~G-~~----~~~~~~l~~~G~iv~~g~~~~~-----~~~~~~------~~~~~~~~~~~~~~l~~g~l~~~~~~t~~~~l  367 (392)
                      +| ..    ..-+..+...-.++.+......     .-+...      .......+..+--++.++...  ...+...++
T Consensus       196 ag~g~~~~~~~~~~~~~~~~~~~dvn~~~~~~i~~t~ll~~a~~~~~~~~~G~~~v~gl~ml~~qa~~a--~~~~~~~~~  273 (287)
T 1lu9_A          196 GAIGLELLPQAAWQNESSIEIVADYNAQPPLGIGGIDATDKGKEYGGKRAFGALGIGGLKLKLHRACIA--KLFESSEGV  273 (287)
T ss_dssp             CCTTCCSBCHHHHTTCTTCCEEEECCCSSSCSBTTSCTTCEEEEETTEEEECHHHHHHHHHHHHHHHHH--HHTSCSCCE
T ss_pred             CCccccCCChhHcCchHHHHHHHHhhhhhhHHhhcchHHhhccccCCCccccceeECchHHHHHHHHHH--HHhhCCCcc
Confidence            86 21    1122223444445444322211     122222      222233444444444444333  234566677


Q ss_pred             hhHHHHHHHHHh
Q 016265          368 SQVVEAFSYIET  379 (392)
Q Consensus       368 ~~~~~A~~~l~~  379 (392)
                      .+..+||+.+++
T Consensus       274 ~d~~~a~~~a~~  285 (287)
T 1lu9_A          274 FDAEEIYKLAKE  285 (287)
T ss_dssp             ESHHHHHHHHHH
T ss_pred             cCHHHHHHHHHh
Confidence            889999987754

>3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A*

Probab=97.17  E-value=0.0021  Score=57.94  Aligned_cols=71  Identities=13%  Similarity=0.173  Sum_probs=50.2

Q ss_pred             CeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcE-EE--eCCCCc-ccc-------CCCCccEEEe
Q 016265          234 KSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADL-AI--DYTKDN-FED-------LPEKFDVVYD  302 (392)
Q Consensus       234 ~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~-vi--~~~~~~-~~~-------~~~~~D~vid  302 (392)
                      ++|||+||++++|.+.++.... .|++|+++++++++++.+.+.+... .+  |..+.. ..+       .-+++|++++
T Consensus         3 K~vlVTGas~GIG~aia~~la~-~Ga~V~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~v~~~~~~~g~iDiLVN   81 (247)
T 3ged_A            3 RGVIVTGGGHGIGKQICLDFLE-AGDKVCFIDIDEKRSADFAKERPNLFYFHGDVADPLTLKKFVEYAMEKLQRIDVLVN   81 (247)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHTTCTTEEEEECCTTSHHHHHHHHHHHHHHHSCCCEEEE
T ss_pred             CEEEEecCCCHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHhcCCEEEEEecCCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence            6899999999999997776655 4999999999988887776555433 22  222211 111       1247999999


Q ss_pred             cCc
Q 016265          303 AIG  305 (392)
Q Consensus       303 ~~G  305 (392)
                      +.|
T Consensus        82 NAG   84 (247)
T 3ged_A           82 NAC   84 (247)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            886

>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A

Probab=97.16  E-value=0.0026  Score=57.60  Aligned_cols=73  Identities=21%  Similarity=0.236  Sum_probs=48.4

Q ss_pred             CCCeEEEEcCCC--cHHHHHHHHHHHhcCCeEEEEeCCcccHHHHH----hcCCc--EEE--eCCCCc-ccc-------C
Q 016265          232 AGKSILVLNGSG--GVGSLVIQLAKQVFGASRVAATSSTRNLEFLK----SLGAD--LAI--DYTKDN-FED-------L  293 (392)
Q Consensus       232 ~g~~VlI~Ga~G--~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~----~~G~~--~vi--~~~~~~-~~~-------~  293 (392)
                      .|+++||+||+|  ++|.+.++.... .|++|+++.+++++++.+.    +++..  +.+  |-.+.. ..+       .
T Consensus         5 ~gK~alVTGaa~~~GIG~aiA~~la~-~Ga~Vvi~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   83 (256)
T 4fs3_A            5 ENKTYVIMGIANKRSIAFGVAKVLDQ-LGAKLVFTYRKERSRKELEKLLEQLNQPEAHLYQIDVQSDEEVINGFEQIGKD   83 (256)
T ss_dssp             TTCEEEEECCCSTTCHHHHHHHHHHH-TTCEEEEEESSGGGHHHHHHHHGGGTCSSCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHH-CCCEEEEEECCHHHHHHHHHHHHhcCCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence            589999999877  899987766555 4999999999887766553    34422  222  322221 111       1


Q ss_pred             CCCccEEEecCc
Q 016265          294 PEKFDVVYDAIG  305 (392)
Q Consensus       294 ~~~~D~vid~~G  305 (392)
                      -+++|+++++.|
T Consensus        84 ~G~iD~lvnnAg   95 (256)
T 4fs3_A           84 VGNIDGVYHSIA   95 (256)
T ss_dssp             HCCCSEEEECCC
T ss_pred             hCCCCEEEeccc
Confidence            247899998866

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=97.16  E-value=0.0012  Score=57.69  Aligned_cols=89  Identities=19%  Similarity=0.243  Sum_probs=61.5

Q ss_pred             eEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEE-EeCCCCccccCCCCccEEEecCcc-------
Q 016265          235 SILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLA-IDYTKDNFEDLPEKFDVVYDAIGQ-------  306 (392)
Q Consensus       235 ~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~v-i~~~~~~~~~~~~~~D~vid~~G~-------  306 (392)
                      +|||+||+|.+|...++.+.. .|.+|+++++++++.+.+. .+...+ .|..+... +..+++|+||.+.|.       
T Consensus         2 kvlVtGatG~iG~~l~~~L~~-~g~~V~~~~R~~~~~~~~~-~~~~~~~~D~~d~~~-~~~~~~d~vi~~ag~~~~~~~~   78 (221)
T 3ew7_A            2 KIGIIGATGRAGSRILEEAKN-RGHEVTAIVRNAGKITQTH-KDINILQKDIFDLTL-SDLSDQNVVVDAYGISPDEAEK   78 (221)
T ss_dssp             EEEEETTTSHHHHHHHHHHHH-TTCEEEEEESCSHHHHHHC-SSSEEEECCGGGCCH-HHHTTCSEEEECCCSSTTTTTS
T ss_pred             eEEEEcCCchhHHHHHHHHHh-CCCEEEEEEcCchhhhhcc-CCCeEEeccccChhh-hhhcCCCEEEECCcCCccccch
Confidence            699999999999999888877 4999999999887766554 333322 12222222 233579999999872       


Q ss_pred             ----HHHHHHhcccC--CeEEEEcCC
Q 016265          307 ----CDRAVKAIKEG--GTVVALTGA  326 (392)
Q Consensus       307 ----~~~~~~~l~~~--G~iv~~g~~  326 (392)
                          ...+++.++..  ++++.++..
T Consensus        79 ~~~~~~~l~~a~~~~~~~~~v~~SS~  104 (221)
T 3ew7_A           79 HVTSLDHLISVLNGTVSPRLLVVGGA  104 (221)
T ss_dssp             HHHHHHHHHHHHCSCCSSEEEEECCC
T ss_pred             HHHHHHHHHHHHHhcCCceEEEEecc
Confidence                24566666653  688887643

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=97.15  E-value=0.0037  Score=50.93  Aligned_cols=90  Identities=16%  Similarity=0.117  Sum_probs=64.8

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEE-eCCCCcc-ccC-CCCccEEEecCccH-
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAI-DYTKDNF-EDL-PEKFDVVYDAIGQC-  307 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi-~~~~~~~-~~~-~~~~D~vid~~G~~-  307 (392)
                      -.++|+|+| .|.+|...++.++. .|.++++++.++++.+.+++.|...+. |..+... .+. .+++|+++-+++.- 
T Consensus         6 ~~~~viIiG-~G~~G~~la~~L~~-~g~~v~vid~~~~~~~~~~~~g~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~~~   83 (140)
T 3fwz_A            6 ICNHALLVG-YGRVGSLLGEKLLA-SDIPLVVIETSRTRVDELRERGVRAVLGNAANEEIMQLAHLECAKWLILTIPNGY   83 (140)
T ss_dssp             CCSCEEEEC-CSHHHHHHHHHHHH-TTCCEEEEESCHHHHHHHHHTTCEEEESCTTSHHHHHHTTGGGCSEEEECCSCHH
T ss_pred             CCCCEEEEC-cCHHHHHHHHHHHH-CCCCEEEEECCHHHHHHHHHcCCCEEECCCCCHHHHHhcCcccCCEEEEECCChH
Confidence            357899998 89999999999988 599999999999999999988876543 3333222 222 35789999998842 


Q ss_pred             -----HHHHHhcccCCeEEEE
Q 016265          308 -----DRAVKAIKEGGTVVAL  323 (392)
Q Consensus       308 -----~~~~~~l~~~G~iv~~  323 (392)
                           -...+.+.+..+++..
T Consensus        84 ~n~~~~~~a~~~~~~~~iiar  104 (140)
T 3fwz_A           84 EAGEIVASARAKNPDIEIIAR  104 (140)
T ss_dssp             HHHHHHHHHHHHCSSSEEEEE
T ss_pred             HHHHHHHHHHHHCCCCeEEEE
Confidence                 2334445566666544

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=97.14  E-value=0.0018  Score=58.16  Aligned_cols=118  Identities=18%  Similarity=0.165  Sum_probs=79.8

Q ss_pred             HHHHhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhc-CCeEEEEeCCcccHHHHHhc-----CCcEEEeCCCCcccc--C-
Q 016265          223 EGLERTGFSAGKSILVLNGSGGVGSLVIQLAKQVF-GASRVAATSSTRNLEFLKSL-----GADLAIDYTKDNFED--L-  293 (392)
Q Consensus       223 ~al~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~-G~~vv~~~~~~~~~~~~~~~-----G~~~vi~~~~~~~~~--~-  293 (392)
                      ..+....++++++||-.| +|. |..+..+++.+. +.+++.++.+++..+.+++.     |.+.+ .....++.+  . 
T Consensus        87 ~~~~~~~~~~~~~vLdiG-~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v-~~~~~d~~~~~~~  163 (258)
T 2pwy_A           87 AMVTLLDLAPGMRVLEAG-TGS-GGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVENV-RFHLGKLEEAELE  163 (258)
T ss_dssp             HHHHHTTCCTTCEEEEEC-CTT-SHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCCCE-EEEESCGGGCCCC
T ss_pred             HHHHHcCCCCCCEEEEEC-CCc-CHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCE-EEEECchhhcCCC
Confidence            345667789999999998 664 999999998742 46889999999888877653     63321 111112222  2 


Q ss_pred             CCCccEEEecCc----cHHHHHHhcccCCeEEEEcCCCCCCceEEEEeecHHHHHHHHHHHHCCCcc
Q 016265          294 PEKFDVVYDAIG----QCDRAVKAIKEGGTVVALTGAVTPPGFRFVVTSNGEVLKKLNPYLESGKVK  356 (392)
Q Consensus       294 ~~~~D~vid~~G----~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~l~  356 (392)
                      .+.+|+|+....    .++.+.++|++||+++.+..             ....+.++.+.+++..+.
T Consensus       164 ~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~-------------~~~~~~~~~~~l~~~gf~  217 (258)
T 2pwy_A          164 EAAYDGVALDLMEPWKVLEKAALALKPDRFLVAYLP-------------NITQVLELVRAAEAHPFR  217 (258)
T ss_dssp             TTCEEEEEEESSCGGGGHHHHHHHEEEEEEEEEEES-------------CHHHHHHHHHHHTTTTEE
T ss_pred             CCCcCEEEECCcCHHHHHHHHHHhCCCCCEEEEEeC-------------CHHHHHHHHHHHHHCCCc
Confidence            246999997654    35889999999999987642             234456666666654443

>4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens}

Probab=97.14  E-value=0.0032  Score=56.66  Aligned_cols=73  Identities=22%  Similarity=0.368  Sum_probs=50.8

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcc--cHHHHHhcCCcEEE---eCCCCc-cccC--CCCccEEEec
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTR--NLEFLKSLGADLAI---DYTKDN-FEDL--PEKFDVVYDA  303 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~--~~~~~~~~G~~~vi---~~~~~~-~~~~--~~~~D~vid~  303 (392)
                      .|+++||+||++++|.+.++.... .|++|++++++..  ..+.+++.|.....   |..+.. ..+.  ..++|+++++
T Consensus         8 ~GKvalVTGas~GIG~aiA~~la~-~Ga~Vvi~~r~~~~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~~g~iDiLVNN   86 (247)
T 4hp8_A            8 EGRKALVTGANTGLGQAIAVGLAA-AGAEVVCAARRAPDETLDIIAKDGGNASALLIDFADPLAAKDSFTDAGFDILVNN   86 (247)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHH-TTCEEEEEESSCCHHHHHHHHHTTCCEEEEECCTTSTTTTTTSSTTTCCCEEEEC
T ss_pred             CCCEEEEeCcCCHHHHHHHHHHHH-cCCEEEEEeCCcHHHHHHHHHHhCCcEEEEEccCCCHHHHHHHHHhCCCCEEEEC
Confidence            589999999999999997777666 4999999987643  35566777754322   332221 1111  2469999999


Q ss_pred             Cc
Q 016265          304 IG  305 (392)
Q Consensus       304 ~G  305 (392)
                      .|
T Consensus        87 AG   88 (247)
T 4hp8_A           87 AG   88 (247)
T ss_dssp             CC
T ss_pred             CC
Confidence            87

>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*

Probab=97.13  E-value=0.00064  Score=65.97  Aligned_cols=98  Identities=20%  Similarity=0.245  Sum_probs=74.9

Q ss_pred             HHHHHHh--cCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCCccccCCCCcc
Q 016265          221 AYEGLER--TGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFEDLPEKFD  298 (392)
Q Consensus       221 a~~al~~--~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~~~~~~~D  298 (392)
                      .+.++.+  ...-.|.+|+|+| .|.+|...++.++. +|++|++.+.++.+...+...|...+      ++.+..+..|
T Consensus       197 lldgi~ratg~~L~GktVgIiG-~G~IG~~vA~~Lka-~Ga~Viv~D~~p~~a~~A~~~G~~~~------sL~eal~~AD  268 (436)
T 3h9u_A          197 LVDGIKRATDVMIAGKTACVCG-YGDVGKGCAAALRG-FGARVVVTEVDPINALQAAMEGYQVL------LVEDVVEEAH  268 (436)
T ss_dssp             HHHHHHHHHCCCCTTCEEEEEC-CSHHHHHHHHHHHH-TTCEEEEECSCHHHHHHHHHTTCEEC------CHHHHTTTCS
T ss_pred             HHHHHHHhcCCcccCCEEEEEe-eCHHHHHHHHHHHH-CCCEEEEECCChhhhHHHHHhCCeec------CHHHHHhhCC
Confidence            3445433  2334699999998 99999999999998 59999999988877777777776432      3555566899


Q ss_pred             EEEecCcc---H-HHHHHhcccCCeEEEEcCC
Q 016265          299 VVYDAIGQ---C-DRAVKAIKEGGTVVALTGA  326 (392)
Q Consensus       299 ~vid~~G~---~-~~~~~~l~~~G~iv~~g~~  326 (392)
                      +|+.+.+.   + ...++.|+++..++.++..
T Consensus       269 VVilt~gt~~iI~~e~l~~MK~gAIVINvgRg  300 (436)
T 3h9u_A          269 IFVTTTGNDDIITSEHFPRMRDDAIVCNIGHF  300 (436)
T ss_dssp             EEEECSSCSCSBCTTTGGGCCTTEEEEECSSS
T ss_pred             EEEECCCCcCccCHHHHhhcCCCcEEEEeCCC
Confidence            99998873   2 4778889999998888643

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=97.11  E-value=0.0023  Score=59.23  Aligned_cols=97  Identities=15%  Similarity=0.246  Sum_probs=69.3

Q ss_pred             HHhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHh----cCCcEEEeCCCCccccCCCCccEE
Q 016265          225 LERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKS----LGADLAIDYTKDNFEDLPEKFDVV  300 (392)
Q Consensus       225 l~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~----~G~~~vi~~~~~~~~~~~~~~D~v  300 (392)
                      +....+++|++||-+| +|. |..+..+++. +|++++.++.+++.++.+++    .|...-+.....++.+..+.+|+|
T Consensus        65 ~~~~~~~~~~~vLDiG-cG~-G~~~~~la~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~fD~v  141 (302)
T 3hem_A           65 LDKLNLEPGMTLLDIG-CGW-GSTMRHAVAE-YDVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEFDEPVDRI  141 (302)
T ss_dssp             HHTTCCCTTCEEEEET-CTT-SHHHHHHHHH-HCCEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGCCCCCSEE
T ss_pred             HHHcCCCCcCEEEEee-ccC-cHHHHHHHHh-CCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHcCCCccEE
Confidence            4567889999999998 664 9999999998 48999999999988877754    343311222222333346689999


Q ss_pred             EecC------------c------cHHHHHHhcccCCeEEEEc
Q 016265          301 YDAI------------G------QCDRAVKAIKEGGTVVALT  324 (392)
Q Consensus       301 id~~------------G------~~~~~~~~l~~~G~iv~~g  324 (392)
                      +...            |      .+..+.++|+|||+++...
T Consensus       142 ~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~  183 (302)
T 3hem_A          142 VSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHT  183 (302)
T ss_dssp             EEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEE
T ss_pred             EEcchHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence            8642            2      1467888999999998764

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=97.11  E-value=0.0023  Score=57.53  Aligned_cols=116  Identities=24%  Similarity=0.239  Sum_probs=78.0

Q ss_pred             HHHhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhc-CCeEEEEeCCcccHHHHHh----cCCcEEEeCCCCcccc-C-CCC
Q 016265          224 GLERTGFSAGKSILVLNGSGGVGSLVIQLAKQVF-GASRVAATSSTRNLEFLKS----LGADLAIDYTKDNFED-L-PEK  296 (392)
Q Consensus       224 al~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~-G~~vv~~~~~~~~~~~~~~----~G~~~vi~~~~~~~~~-~-~~~  296 (392)
                      .+....+++|++||-.| +|. |..+..+++.+. +.+++.++.+++..+.+++    .|.+..++....++.+ . .+.
T Consensus        85 i~~~~~~~~~~~vldiG-~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~  162 (255)
T 3mb5_A           85 IVAYAGISPGDFIVEAG-VGS-GALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEGIEEEN  162 (255)
T ss_dssp             HHHHTTCCTTCEEEEEC-CTT-SHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGCCCCCS
T ss_pred             HHHhhCCCCCCEEEEec-CCc-hHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhccCCCC
Confidence            44567889999999998 665 889999998743 5688889989888777754    3543212211222222 2 245


Q ss_pred             ccEEEecCc----cHHHHHHhcccCCeEEEEcCCCCCCceEEEEeecHHHHHHHHHHHHCCC
Q 016265          297 FDVVYDAIG----QCDRAVKAIKEGGTVVALTGAVTPPGFRFVVTSNGEVLKKLNPYLESGK  354 (392)
Q Consensus       297 ~D~vid~~G----~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~  354 (392)
                      +|+|+....    .++.+.++|++||+++.+..             ......++.+++++..
T Consensus       163 ~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~-------------~~~~~~~~~~~l~~~g  211 (255)
T 3mb5_A          163 VDHVILDLPQPERVVEHAAKALKPGGFFVAYTP-------------CSNQVMRLHEKLREFK  211 (255)
T ss_dssp             EEEEEECSSCGGGGHHHHHHHEEEEEEEEEEES-------------SHHHHHHHHHHHHHTG
T ss_pred             cCEEEECCCCHHHHHHHHHHHcCCCCEEEEEEC-------------CHHHHHHHHHHHHHcC
Confidence            999997765    36899999999999986632             2344556666666543

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=97.11  E-value=0.0013  Score=59.62  Aligned_cols=92  Identities=12%  Similarity=0.152  Sum_probs=67.7

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcE-EEeCCCCccccCCCCccEEEecCc--cH
Q 016265          231 SAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADL-AIDYTKDNFEDLPEKFDVVYDAIG--QC  307 (392)
Q Consensus       231 ~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~-vi~~~~~~~~~~~~~~D~vid~~G--~~  307 (392)
                      .++.+||.+| +|. |..+..+++...+.+++.++.++..++.+++.+... ++..+........+.||+|+....  .+
T Consensus        84 ~~~~~vLdiG-~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~~~~l  161 (269)
T 1p91_A           84 DKATAVLDIG-CGE-GYYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYAPCKA  161 (269)
T ss_dssp             TTCCEEEEET-CTT-STTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEEEEESCCCCH
T ss_pred             CCCCEEEEEC-CCC-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhCCCcEEEEcchhhCCCCCCceeEEEEeCChhhH
Confidence            6789999998 777 999999998632678999999999999988766432 222222222222357999996432  57


Q ss_pred             HHHHHhcccCCeEEEEc
Q 016265          308 DRAVKAIKEGGTVVALT  324 (392)
Q Consensus       308 ~~~~~~l~~~G~iv~~g  324 (392)
                      ..+.+.|+|||+++...
T Consensus       162 ~~~~~~L~pgG~l~~~~  178 (269)
T 1p91_A          162 EELARVVKPGGWVITAT  178 (269)
T ss_dssp             HHHHHHEEEEEEEEEEE
T ss_pred             HHHHHhcCCCcEEEEEE
Confidence            99999999999998763

>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}

Probab=97.11  E-value=0.0026  Score=57.64  Aligned_cols=73  Identities=19%  Similarity=0.349  Sum_probs=50.7

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHH----HhcCCcEE-E--eCCCCc-ccc-------CCCC
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFL----KSLGADLA-I--DYTKDN-FED-------LPEK  296 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~----~~~G~~~v-i--~~~~~~-~~~-------~~~~  296 (392)
                      +|+++||+||++++|.+.++.... .|++|+++++++++++.+    ++.|.... +  |-.+.+ ..+       .-++
T Consensus         6 ~gKvalVTGas~GIG~aiA~~la~-~Ga~Vv~~~~~~~~~~~~~~~i~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~~G~   84 (254)
T 4fn4_A            6 KNKVVIVTGAGSGIGRAIAKKFAL-NDSIVVAVELLEDRLNQIVQELRGMGKEVLGVKADVSKKKDVEEFVRRTFETYSR   84 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHH-cCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            588999999999999997766655 499999999988876544    44565432 2  322221 111       1247


Q ss_pred             ccEEEecCc
Q 016265          297 FDVVYDAIG  305 (392)
Q Consensus       297 ~D~vid~~G  305 (392)
                      +|+++++.|
T Consensus        85 iDiLVNNAG   93 (254)
T 4fn4_A           85 IDVLCNNAG   93 (254)
T ss_dssp             CCEEEECCC
T ss_pred             CCEEEECCc
Confidence            899999876

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*

Probab=97.07  E-value=0.0017  Score=57.04  Aligned_cols=93  Identities=13%  Similarity=0.093  Sum_probs=61.9

Q ss_pred             CeEEEEcCCCcHHHHHHHHHH-HhcCCeEEEEeCCcc-cHHHHHhcCCc-EEE--eCCC-CccccCCCCccEEEecCcc-
Q 016265          234 KSILVLNGSGGVGSLVIQLAK-QVFGASRVAATSSTR-NLEFLKSLGAD-LAI--DYTK-DNFEDLPEKFDVVYDAIGQ-  306 (392)
Q Consensus       234 ~~VlI~Ga~G~vG~~aiqlak-~~~G~~vv~~~~~~~-~~~~~~~~G~~-~vi--~~~~-~~~~~~~~~~D~vid~~G~-  306 (392)
                      .+|+|+||+|++|...++.+. . .|.+|++++++++ +.+.+...+.. .++  |..+ +.+.+..+++|++|++.|. 
T Consensus         6 k~vlVtGasg~iG~~~~~~l~~~-~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vv~~ag~~   84 (221)
T 3r6d_A            6 XYITILGAAGQIAQXLTATLLTY-TDMHITLYGRQLKTRIPPEIIDHERVTVIEGSFQNPGXLEQAVTNAEVVFVGAMES   84 (221)
T ss_dssp             SEEEEESTTSHHHHHHHHHHHHH-CCCEEEEEESSHHHHSCHHHHTSTTEEEEECCTTCHHHHHHHHTTCSEEEESCCCC
T ss_pred             EEEEEEeCCcHHHHHHHHHHHhc-CCceEEEEecCccccchhhccCCCceEEEECCCCCHHHHHHHHcCCCEEEEcCCCC
Confidence            469999999999999887766 6 5999999999877 66555322322 223  3322 1223334589999999984 


Q ss_pred             ---HHHHHHhcccC--CeEEEEcCCC
Q 016265          307 ---CDRAVKAIKEG--GTVVALTGAV  327 (392)
Q Consensus       307 ---~~~~~~~l~~~--G~iv~~g~~~  327 (392)
                         ...+++.++..  |+||.++...
T Consensus        85 n~~~~~~~~~~~~~~~~~iv~iSs~~  110 (221)
T 3r6d_A           85 GSDMASIVKALSRXNIRRVIGVSMAG  110 (221)
T ss_dssp             HHHHHHHHHHHHHTTCCEEEEEEETT
T ss_pred             ChhHHHHHHHHHhcCCCeEEEEeece
Confidence               34555555543  5888886443

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=97.07  E-value=0.0016  Score=57.02  Aligned_cols=89  Identities=18%  Similarity=0.186  Sum_probs=61.3

Q ss_pred             eEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEE-eCCCCccccCCCCccEEEecCcc-------
Q 016265          235 SILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAI-DYTKDNFEDLPEKFDVVYDAIGQ-------  306 (392)
Q Consensus       235 ~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi-~~~~~~~~~~~~~~D~vid~~G~-------  306 (392)
                      +|||+||+|.+|...+..+.. .|.+|+++++++++.+.+...+...+. |..+... +..+++|+||.+.|.       
T Consensus         2 kilVtGatG~iG~~l~~~L~~-~g~~V~~~~R~~~~~~~~~~~~~~~~~~D~~d~~~-~~~~~~d~vi~~ag~~~~~~~~   79 (224)
T 3h2s_A            2 KIAVLGATGRAGSAIVAEARR-RGHEVLAVVRDPQKAADRLGATVATLVKEPLVLTE-ADLDSVDAVVDALSVPWGSGRG   79 (224)
T ss_dssp             EEEEETTTSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHTCTTSEEEECCGGGCCH-HHHTTCSEEEECCCCCTTSSCT
T ss_pred             EEEEEcCCCHHHHHHHHHHHH-CCCEEEEEEecccccccccCCCceEEecccccccH-hhcccCCEEEECCccCCCcchh
Confidence            599999999999998888777 499999999988877665444443321 3222222 333589999999863       


Q ss_pred             ------HHHHHHhccc-CCeEEEEcC
Q 016265          307 ------CDRAVKAIKE-GGTVVALTG  325 (392)
Q Consensus       307 ------~~~~~~~l~~-~G~iv~~g~  325 (392)
                            ...+++.++. ++++|.++.
T Consensus        80 ~~n~~~~~~l~~a~~~~~~~~v~~SS  105 (224)
T 3h2s_A           80 YLHLDFATHLVSLLRNSDTLAVFILG  105 (224)
T ss_dssp             HHHHHHHHHHHHTCTTCCCEEEEECC
T ss_pred             hHHHHHHHHHHHHHHHcCCcEEEEec
Confidence                  1345555544 578888853

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=97.03  E-value=0.0032  Score=54.70  Aligned_cols=99  Identities=14%  Similarity=0.046  Sum_probs=69.5

Q ss_pred             HHHhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHh----cCCcE--EEeCCCCccccCCCCc
Q 016265          224 GLERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKS----LGADL--AIDYTKDNFEDLPEKF  297 (392)
Q Consensus       224 al~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~----~G~~~--vi~~~~~~~~~~~~~~  297 (392)
                      .++...++++++||-+| +| .|..+..+++.  +.+++.++.+++..+.+++    .|.+.  ++..+........+.|
T Consensus        69 ~~~~l~~~~~~~vLdiG-~G-~G~~~~~la~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  144 (210)
T 3lbf_A           69 MTELLELTPQSRVLEIG-TG-SGYQTAILAHL--VQHVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGWQARAPF  144 (210)
T ss_dssp             HHHHTTCCTTCEEEEEC-CT-TSHHHHHHHHH--SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCE
T ss_pred             HHHhcCCCCCCEEEEEc-CC-CCHHHHHHHHh--CCEEEEEecCHHHHHHHHHHHHHcCCCceEEEECCcccCCccCCCc
Confidence            44667789999999998 66 58899999985  7899999999988877754    34332  2222111111123579


Q ss_pred             cEEEecCc---cHHHHHHhcccCCeEEEEcCC
Q 016265          298 DVVYDAIG---QCDRAVKAIKEGGTVVALTGA  326 (392)
Q Consensus       298 D~vid~~G---~~~~~~~~l~~~G~iv~~g~~  326 (392)
                      |+|+....   ..+.+.+.|++||+++..-..
T Consensus       145 D~i~~~~~~~~~~~~~~~~L~pgG~lv~~~~~  176 (210)
T 3lbf_A          145 DAIIVTAAPPEIPTALMTQLDEGGILVLPVGE  176 (210)
T ss_dssp             EEEEESSBCSSCCTHHHHTEEEEEEEEEEECS
T ss_pred             cEEEEccchhhhhHHHHHhcccCcEEEEEEcC
Confidence            99998754   246889999999998876443

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=97.03  E-value=0.0026  Score=56.58  Aligned_cols=99  Identities=21%  Similarity=0.273  Sum_probs=69.0

Q ss_pred             HHHHhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHh----cCCcE--EEeCCC-CccccCCC
Q 016265          223 EGLERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKS----LGADL--AIDYTK-DNFEDLPE  295 (392)
Q Consensus       223 ~al~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~----~G~~~--vi~~~~-~~~~~~~~  295 (392)
                      ..++...++++++||.+| +| .|..+..+++.. +.+++.++.+++..+.+++    .|.+.  ++..+. ..+. ...
T Consensus        82 ~~~~~l~~~~~~~vLdiG-~G-~G~~~~~la~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~-~~~  157 (235)
T 1jg1_A           82 IMLEIANLKPGMNILEVG-TG-SGWNAALISEIV-KTDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFP-PKA  157 (235)
T ss_dssp             HHHHHHTCCTTCCEEEEC-CT-TSHHHHHHHHHH-CSCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCG-GGC
T ss_pred             HHHHhcCCCCCCEEEEEe-CC-cCHHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEECCcccCCC-CCC
Confidence            344556788999999998 66 799999999874 5889999999888777754    45332  111111 1111 123


Q ss_pred             CccEEEecCc---cHHHHHHhcccCCeEEEEcC
Q 016265          296 KFDVVYDAIG---QCDRAVKAIKEGGTVVALTG  325 (392)
Q Consensus       296 ~~D~vid~~G---~~~~~~~~l~~~G~iv~~g~  325 (392)
                      ++|+|+.+..   ..+.+.+.|++||+++..-.
T Consensus       158 ~fD~Ii~~~~~~~~~~~~~~~L~pgG~lvi~~~  190 (235)
T 1jg1_A          158 PYDVIIVTAGAPKIPEPLIEQLKIGGKLIIPVG  190 (235)
T ss_dssp             CEEEEEECSBBSSCCHHHHHTEEEEEEEEEEEC
T ss_pred             CccEEEECCcHHHHHHHHHHhcCCCcEEEEEEe
Confidence            5999997755   24788999999999877644

>1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A*

Probab=96.98  E-value=0.0038  Score=57.15  Aligned_cols=93  Identities=20%  Similarity=0.310  Sum_probs=60.5

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCccc-HH----HHHhcCCcE-EE--eCCCCc-ccc-------CCC
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRN-LE----FLKSLGADL-AI--DYTKDN-FED-------LPE  295 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~-~~----~~~~~G~~~-vi--~~~~~~-~~~-------~~~  295 (392)
                      .|+++||+||+|++|.+.++.+.. .|++|++++++.++ .+    .+++.|... .+  |..+.. +.+       .-+
T Consensus        28 ~~k~vlVTGas~gIG~~ia~~l~~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g  106 (283)
T 1g0o_A           28 EGKVALVTGAGRGIGREMAMELGR-RGCKVIVNYANSTESAEEVVAAIKKNGSDAACVKANVGVVEDIVRMFEEAVKIFG  106 (283)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHH-TTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHH-CCCEEEEEeCCchHHHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            478999999999999998887766 49999998886543 22    234455432 22  322211 111       123


Q ss_pred             CccEEEecCcc----------------------------HHHHHHhcccCCeEEEEcC
Q 016265          296 KFDVVYDAIGQ----------------------------CDRAVKAIKEGGTVVALTG  325 (392)
Q Consensus       296 ~~D~vid~~G~----------------------------~~~~~~~l~~~G~iv~~g~  325 (392)
                      ++|++|++.|.                            ++.+++.++.+|+||.++.
T Consensus       107 ~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS  164 (283)
T 1g0o_A          107 KLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMGS  164 (283)
T ss_dssp             CCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEECC
T ss_pred             CCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCeEEEEec
Confidence            78999999761                            1334555666799999864

>2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2

Probab=96.97  E-value=0.0049  Score=55.92  Aligned_cols=73  Identities=30%  Similarity=0.399  Sum_probs=49.7

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHH-hcCCc-EEE--eCCCCc-cccC-------CCCccE
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLK-SLGAD-LAI--DYTKDN-FEDL-------PEKFDV  299 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~-~~G~~-~vi--~~~~~~-~~~~-------~~~~D~  299 (392)
                      .|.+++|+||+|++|.+.++.+.. .|++|+++++++++++.+. +++.. ..+  |..+.. +.+.       .+++|+
T Consensus         5 ~~k~vlITGas~gIG~aia~~l~~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~iD~   83 (263)
T 2a4k_A            5 SGKTILVTGAASGIGRAALDLFAR-EGASLVAVDREERLLAEAVAALEAEAIAVVADVSDPKAVEAVFAEALEEFGRLHG   83 (263)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHTCCSSEEEEECCTTSHHHHHHHHHHHHHHHSCCCE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHHhcCceEEEEcCCCCHHHHHHHHHHHHHHcCCCcE
Confidence            468999999999999998877766 4999999999887766553 44322 122  322211 1111       236899


Q ss_pred             EEecCc
Q 016265          300 VYDAIG  305 (392)
Q Consensus       300 vid~~G  305 (392)
                      +|++.|
T Consensus        84 lvnnAg   89 (263)
T 2a4k_A           84 VAHFAG   89 (263)
T ss_dssp             EEEGGG
T ss_pred             EEECCC
Confidence            999876

>4b79_A PA4098, probable short-chain dehydrogenase; oxidoreductase, infectious disease, structure-based inhibito; HET: NAD; 1.98A {Pseudomonas aeruginosa PAO1}

Probab=96.96  E-value=0.00091  Score=60.10  Aligned_cols=94  Identities=21%  Similarity=0.367  Sum_probs=61.0

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCc-EEEeCCCCc-cc---cCCCCccEEEecCc
Q 016265          231 SAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGAD-LAIDYTKDN-FE---DLPEKFDVVYDAIG  305 (392)
Q Consensus       231 ~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~-~vi~~~~~~-~~---~~~~~~D~vid~~G  305 (392)
                      -.|+++||+||++++|.+.++.... .|++|+++++++++++..+.-.+. ...|-.+.. ++   +.-+++|+++++.|
T Consensus         9 f~GK~alVTGas~GIG~aia~~la~-~Ga~Vv~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~g~iDiLVNNAG   87 (242)
T 4b79_A            9 YAGQQVLVTGGSSGIGAAIAMQFAE-LGAEVVALGLDADGVHAPRHPRIRREELDITDSQRLQRLFEALPRLDVLVNNAG   87 (242)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHH-TTCEEEEEESSTTSTTSCCCTTEEEEECCTTCHHHHHHHHHHCSCCSEEEECCC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHH-CCCEEEEEeCCHHHHhhhhcCCeEEEEecCCCHHHHHHHHHhcCCCCEEEECCC
Confidence            3699999999999999998777666 499999999887765532211111 112322211 11   11357899999987


Q ss_pred             c--------------------------HHHHHHhcc-cCCeEEEEcC
Q 016265          306 Q--------------------------CDRAVKAIK-EGGTVVALTG  325 (392)
Q Consensus       306 ~--------------------------~~~~~~~l~-~~G~iv~~g~  325 (392)
                      .                          .+.++..|+ .+|+||.++.
T Consensus        88 i~~~~~~~~~~~w~~~~~vNl~g~~~~~~~~~p~m~~~~G~IVnisS  134 (242)
T 4b79_A           88 ISRDREEYDLATFERVLRLNLSAAMLASQLARPLLAQRGGSILNIAS  134 (242)
T ss_dssp             CCCGGGGGSHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCEEEEEECC
T ss_pred             CCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEee
Confidence            1                          133455554 4799999864

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=96.95  E-value=0.0032  Score=57.64  Aligned_cols=96  Identities=17%  Similarity=0.251  Sum_probs=67.0

Q ss_pred             HHhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhc----CCcEEEeCCCCccccCCCCccEE
Q 016265          225 LERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSL----GADLAIDYTKDNFEDLPEKFDVV  300 (392)
Q Consensus       225 l~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~----G~~~vi~~~~~~~~~~~~~~D~v  300 (392)
                      ++...++++++||-+| +|. |..+..+++.. |++++.++.+++.++.+++.    |...-+.....++.+..+.+|+|
T Consensus        57 ~~~~~~~~~~~vLDiG-cG~-G~~~~~l~~~~-~~~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~fD~v  133 (287)
T 1kpg_A           57 LGKLGLQPGMTLLDVG-CGW-GATMMRAVEKY-DVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFDEPVDRI  133 (287)
T ss_dssp             HTTTTCCTTCEEEEET-CTT-SHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCCCCCSEE
T ss_pred             HHHcCCCCcCEEEEEC-Ccc-cHHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCCeeEE
Confidence            3456788999999998 554 88899999774 89999999999888777643    32211111122233344679999


Q ss_pred             Eec-----Cc------cHHHHHHhcccCCeEEEE
Q 016265          301 YDA-----IG------QCDRAVKAIKEGGTVVAL  323 (392)
Q Consensus       301 id~-----~G------~~~~~~~~l~~~G~iv~~  323 (392)
                      +..     .+      .+..+.++|+|||+++..
T Consensus       134 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~  167 (287)
T 1kpg_A          134 VSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLH  167 (287)
T ss_dssp             EEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEE
T ss_pred             EEeCchhhcChHHHHHHHHHHHHhcCCCCEEEEE
Confidence            865     22      147788899999999865

>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A

Probab=96.91  E-value=0.0053  Score=55.43  Aligned_cols=73  Identities=19%  Similarity=0.313  Sum_probs=50.4

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHH-HhcCCcE-EE--eCCCCc-ccc-------CCCCccE
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFL-KSLGADL-AI--DYTKDN-FED-------LPEKFDV  299 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~-~~~G~~~-vi--~~~~~~-~~~-------~~~~~D~  299 (392)
                      .|+++||+||+|++|...++.+.. .|++|++++++.++.+.+ ++++... .+  |..+.+ +.+       .-+++|+
T Consensus         7 ~~k~vlVTGas~gIG~~ia~~l~~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~id~   85 (259)
T 4e6p_A            7 EGKSALITGSARGIGRAFAEAYVR-EGATVAIADIDIERARQAAAEIGPAAYAVQMDVTRQDSIDAAIAATVEHAGGLDI   85 (259)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHCTTEEEEECCTTCHHHHHHHHHHHHHHSSSCCE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHHhCCCceEEEeeCCCHHHHHHHHHHHHHHcCCCCE
Confidence            578999999999999997776666 499999999888776554 4555332 22  332221 111       1247999


Q ss_pred             EEecCc
Q 016265          300 VYDAIG  305 (392)
Q Consensus       300 vid~~G  305 (392)
                      +|++.|
T Consensus        86 lv~~Ag   91 (259)
T 4e6p_A           86 LVNNAA   91 (259)
T ss_dssp             EEECCC
T ss_pred             EEECCC
Confidence            999977

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=96.90  E-value=0.0056  Score=55.73  Aligned_cols=98  Identities=15%  Similarity=0.206  Sum_probs=68.4

Q ss_pred             HHHhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhc-CCeEEEEeCCcccHHHHHhc-----C--CcEEEeCCCCccccC--
Q 016265          224 GLERTGFSAGKSILVLNGSGGVGSLVIQLAKQVF-GASRVAATSSTRNLEFLKSL-----G--ADLAIDYTKDNFEDL--  293 (392)
Q Consensus       224 al~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~-G~~vv~~~~~~~~~~~~~~~-----G--~~~vi~~~~~~~~~~--  293 (392)
                      .+....+++|++||-+| +| .|..+..+++.+. +.+++.++.+++..+.+++.     |  .+. +.....++.+.  
T Consensus        91 i~~~~~~~~~~~vLdiG-~G-~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~-v~~~~~d~~~~~~  167 (280)
T 1i9g_A           91 IVHEGDIFPGARVLEAG-AG-SGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDN-WRLVVSDLADSEL  167 (280)
T ss_dssp             HHHHTTCCTTCEEEEEC-CT-TSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTT-EEEECSCGGGCCC
T ss_pred             HHHHcCCCCCCEEEEEc-cc-ccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCc-EEEEECchHhcCC
Confidence            44567789999999998 66 7899999998642 46888899898888777543     4  222 11111122221  


Q ss_pred             -CCCccEEEecCc----cHHHHHHhcccCCeEEEEc
Q 016265          294 -PEKFDVVYDAIG----QCDRAVKAIKEGGTVVALT  324 (392)
Q Consensus       294 -~~~~D~vid~~G----~~~~~~~~l~~~G~iv~~g  324 (392)
                       .+.+|+|+....    .++.+.++|++||+++.+.
T Consensus       168 ~~~~~D~v~~~~~~~~~~l~~~~~~L~pgG~l~~~~  203 (280)
T 1i9g_A          168 PDGSVDRAVLDMLAPWEVLDAVSRLLVAGGVLMVYV  203 (280)
T ss_dssp             CTTCEEEEEEESSCGGGGHHHHHHHEEEEEEEEEEE
T ss_pred             CCCceeEEEECCcCHHHHHHHHHHhCCCCCEEEEEe
Confidence             346999997654    3688999999999998763

>4gkb_A 3-oxoacyl-[acyl-carrier protein] reductase; putative sugar dehydrogenase, enzyme function initiative, EF structural genomics; 1.50A {Burkholderia multivorans} PDB: 4glo_A*

Probab=96.90  E-value=0.0069  Score=54.91  Aligned_cols=73  Identities=18%  Similarity=0.246  Sum_probs=48.8

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHH---HhcCCcE-EE--eCCCCc-ccc-------CCCCc
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFL---KSLGADL-AI--DYTKDN-FED-------LPEKF  297 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~---~~~G~~~-vi--~~~~~~-~~~-------~~~~~  297 (392)
                      .|+++||+||++++|.+.++.... .|++|++.++++++.+.+   ++.|... .+  |..++. ..+       .-+++
T Consensus         6 ~gKvalVTGas~GIG~aia~~la~-~Ga~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~v~~~~~~~G~i   84 (258)
T 4gkb_A            6 QDKVVIVTGGASGIGGAISMRLAE-ERAIPVVFARHAPDGAFLDALAQRQPRATYLPVELQDDAQCRDAVAQTIATFGRL   84 (258)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHH-TTCEEEEEESSCCCHHHHHHHHHHCTTCEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHH-cCCEEEEEECCcccHHHHHHHHhcCCCEEEEEeecCCHHHHHHHHHHHHHHhCCC
Confidence            588999999999999997765555 499999999877665443   3444332 22  333221 111       12478


Q ss_pred             cEEEecCc
Q 016265          298 DVVYDAIG  305 (392)
Q Consensus       298 D~vid~~G  305 (392)
                      |+++++.|
T Consensus        85 DiLVNnAG   92 (258)
T 4gkb_A           85 DGLVNNAG   92 (258)
T ss_dssp             CEEEECCC
T ss_pred             CEEEECCC
Confidence            99999987

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*

Probab=96.89  E-value=0.0053  Score=56.57  Aligned_cols=93  Identities=18%  Similarity=0.346  Sum_probs=60.1

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCccc-HHH----HHhcCCcEE-E--eCCCCc-ccc-------CCC
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRN-LEF----LKSLGADLA-I--DYTKDN-FED-------LPE  295 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~-~~~----~~~~G~~~v-i--~~~~~~-~~~-------~~~  295 (392)
                      .|+++||+||+|++|.+.++.+.. .|++|++++++.++ .+.    +++.|.... +  |..+.. +.+       ..+
T Consensus        46 ~gk~vlVTGas~GIG~aia~~la~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g  124 (291)
T 3ijr_A           46 KGKNVLITGGDSGIGRAVSIAFAK-EGANIAIAYLDEEGDANETKQYVEKEGVKCVLLPGDLSDEQHCKDIVQETVRQLG  124 (291)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHH-TTCEEEEEESSCHHHHHHHHHHHHTTTCCEEEEESCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHH-CCCEEEEEeCCchHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            578999999999999998777666 49999999886553 222    234454332 2  322211 111       123


Q ss_pred             CccEEEecCcc-----------------------------HHHHHHhcccCCeEEEEcC
Q 016265          296 KFDVVYDAIGQ-----------------------------CDRAVKAIKEGGTVVALTG  325 (392)
Q Consensus       296 ~~D~vid~~G~-----------------------------~~~~~~~l~~~G~iv~~g~  325 (392)
                      ++|++|++.|.                             .+.++..++.+|+||.++.
T Consensus       125 ~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~iv~isS  183 (291)
T 3ijr_A          125 SLNILVNNVAQQYPQQGLEYITAEQLEKTFRINIFSYFHVTKAALSHLKQGDVIINTAS  183 (291)
T ss_dssp             SCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCCTTCEEEEECC
T ss_pred             CCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCEEEEEec
Confidence            78999998651                             1234455677899998864

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=96.89  E-value=0.0014  Score=56.80  Aligned_cols=127  Identities=17%  Similarity=0.160  Sum_probs=76.5

Q ss_pred             cceeEEE-ecCCceeeCCCCCCHHhHhccchhHHHHHHHHH--hcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEE
Q 016265          187 SLAEYTA-VEERLLAPKPKNLDFVQAAGLPLAIETAYEGLE--RTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVA  263 (392)
Q Consensus       187 ~~a~~~~-v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~al~--~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~  263 (392)
                      .|.+|.. .+....+.+++++.+..+..   .  +....++  ...++++++||-+| +|. |..+..+++. ...+++.
T Consensus        17 ~w~~~~~~~~~~~~~~~~~~~~f~~~~~---~--~~~~~~~~l~~~~~~~~~vLDiG-~G~-G~~~~~l~~~-~~~~v~~   88 (205)
T 3grz_A           17 EWEDYQPVFKDQEIIRLDPGLAFGTGNH---Q--TTQLAMLGIERAMVKPLTVADVG-TGS-GILAIAAHKL-GAKSVLA   88 (205)
T ss_dssp             TTCCCCCSSTTCEEEEESCC-----CCH---H--HHHHHHHHHHHHCSSCCEEEEET-CTT-SHHHHHHHHT-TCSEEEE
T ss_pred             cccccccCCCCceeEEecCCcccCCCCC---c--cHHHHHHHHHHhccCCCEEEEEC-CCC-CHHHHHHHHC-CCCEEEE
Confidence            4667766 66777788888776655321   1  1111221  11257889999998 665 8888888864 2348889


Q ss_pred             EeCCcccHHHHHh----cCCc--EEEeCCCCccccCCCCccEEEecCc--c----HHHHHHhcccCCeEEEE
Q 016265          264 ATSSTRNLEFLKS----LGAD--LAIDYTKDNFEDLPEKFDVVYDAIG--Q----CDRAVKAIKEGGTVVAL  323 (392)
Q Consensus       264 ~~~~~~~~~~~~~----~G~~--~vi~~~~~~~~~~~~~~D~vid~~G--~----~~~~~~~l~~~G~iv~~  323 (392)
                      ++.++..++.+++    .|..  .++..+-..  ...+.+|+|+....  .    ++.+.++|++||+++..
T Consensus        89 vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~--~~~~~fD~i~~~~~~~~~~~~l~~~~~~L~~gG~l~~~  158 (205)
T 3grz_A           89 TDISDESMTAAEENAALNGIYDIALQKTSLLA--DVDGKFDLIVANILAEILLDLIPQLDSHLNEDGQVIFS  158 (205)
T ss_dssp             EESCHHHHHHHHHHHHHTTCCCCEEEESSTTT--TCCSCEEEEEEESCHHHHHHHGGGSGGGEEEEEEEEEE
T ss_pred             EECCHHHHHHHHHHHHHcCCCceEEEeccccc--cCCCCceEEEECCcHHHHHHHHHHHHHhcCCCCEEEEE
Confidence            9999888777754    3433  222222111  12467999987643  1    35666789999998764

>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A

Probab=96.89  E-value=0.0052  Score=55.90  Aligned_cols=94  Identities=28%  Similarity=0.416  Sum_probs=61.1

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCC-cccHHH----HHhcCCcEE-E--eCCCC-ccccC-------CC
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSS-TRNLEF----LKSLGADLA-I--DYTKD-NFEDL-------PE  295 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~-~~~~~~----~~~~G~~~v-i--~~~~~-~~~~~-------~~  295 (392)
                      .|+++||+||+|++|.+.++.... .|++|+++++. .++.+.    +++.|.... +  |..+. .+.+.       -+
T Consensus        17 ~~k~~lVTGas~gIG~aia~~l~~-~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   95 (270)
T 3is3_A           17 DGKVALVTGSGRGIGAAVAVHLGR-LGAKVVVNYANSTKDAEKVVSEIKALGSDAIAIKADIRQVPEIVKLFDQAVAHFG   95 (270)
T ss_dssp             TTCEEEESCTTSHHHHHHHHHHHH-TTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCchHHHHHHHHHHH-CCCEEEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            578999999999999998877666 49999987753 443332    344554332 2  22221 11111       23


Q ss_pred             CccEEEecCcc----------------------------HHHHHHhcccCCeEEEEcCC
Q 016265          296 KFDVVYDAIGQ----------------------------CDRAVKAIKEGGTVVALTGA  326 (392)
Q Consensus       296 ~~D~vid~~G~----------------------------~~~~~~~l~~~G~iv~~g~~  326 (392)
                      ++|++|++.|.                            .+.++..++++|+||.++..
T Consensus        96 ~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS~  154 (270)
T 3is3_A           96 HLDIAVSNSGVVSFGHLKDVTEEEFDRVFSLNTRGQFFVAREAYRHLTEGGRIVLTSSN  154 (270)
T ss_dssp             CCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECCT
T ss_pred             CCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEEeCc
Confidence            68999998761                            13456667789999998653

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=96.89  E-value=0.0062  Score=54.67  Aligned_cols=98  Identities=15%  Similarity=0.183  Sum_probs=70.2

Q ss_pred             HHHhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCc----EEEeCCCCccccCCCCccE
Q 016265          224 GLERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGAD----LAIDYTKDNFEDLPEKFDV  299 (392)
Q Consensus       224 al~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~----~vi~~~~~~~~~~~~~~D~  299 (392)
                      .+....++++++||-+| +| .|..+..+++.. +++++.++.++..++.+++....    .++..+-.......+.+|+
T Consensus        47 ~~~~~~~~~~~~vLdiG-~G-~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD~  123 (266)
T 3ujc_A           47 ILSDIELNENSKVLDIG-SG-LGGGCMYINEKY-GAHTHGIDICSNIVNMANERVSGNNKIIFEANDILTKEFPENNFDL  123 (266)
T ss_dssp             HTTTCCCCTTCEEEEET-CT-TSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHTCCSCTTEEEEECCTTTCCCCTTCEEE
T ss_pred             HHHhcCCCCCCEEEEEC-CC-CCHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHhhcCCCeEEEECccccCCCCCCcEEE
Confidence            34556788999999998 55 799999999984 89999999999999998876432    1222221111112457999


Q ss_pred             EEecCc--c---------HHHHHHhcccCCeEEEEc
Q 016265          300 VYDAIG--Q---------CDRAVKAIKEGGTVVALT  324 (392)
Q Consensus       300 vid~~G--~---------~~~~~~~l~~~G~iv~~g  324 (392)
                      |+....  .         +..+.++|+|||+++...
T Consensus       124 v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~  159 (266)
T 3ujc_A          124 IYSRDAILALSLENKNKLFQKCYKWLKPTGTLLITD  159 (266)
T ss_dssp             EEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EeHHHHHHhcChHHHHHHHHHHHHHcCCCCEEEEEE
Confidence            997532  1         477888999999998764

>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}

Probab=96.88  E-value=0.0046  Score=55.96  Aligned_cols=74  Identities=19%  Similarity=0.343  Sum_probs=49.7

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHH----HhcCCcE-EE--eCCCCc-ccc-------CCC
Q 016265          231 SAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFL----KSLGADL-AI--DYTKDN-FED-------LPE  295 (392)
Q Consensus       231 ~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~----~~~G~~~-vi--~~~~~~-~~~-------~~~  295 (392)
                      -.|.+|||+||+|++|...+..+.. .|++|++++++.++++.+    ++.|... ++  |..+.. +.+       ..+
T Consensus        27 l~~k~vlITGas~gIG~~la~~l~~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g  105 (262)
T 3rkr_A           27 LSGQVAVVTGASRGIGAAIARKLGS-LGARVVLTARDVEKLRAVEREIVAAGGEAESHACDLSHSDAIAAFATGVLAAHG  105 (262)
T ss_dssp             TTTCEEEESSTTSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHH-CCCEEEEEECCHHHHHHHHHHHHHhCCceeEEEecCCCHHHHHHHHHHHHHhcC
Confidence            3578999999999999998776666 499999999988776544    2334332 22  322211 111       123


Q ss_pred             CccEEEecCc
Q 016265          296 KFDVVYDAIG  305 (392)
Q Consensus       296 ~~D~vid~~G  305 (392)
                      .+|++|++.|
T Consensus       106 ~id~lv~~Ag  115 (262)
T 3rkr_A          106 RCDVLVNNAG  115 (262)
T ss_dssp             CCSEEEECCC
T ss_pred             CCCEEEECCC
Confidence            6899999876

>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A

Probab=96.88  E-value=0.0062  Score=54.74  Aligned_cols=43  Identities=21%  Similarity=0.309  Sum_probs=35.5

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHH
Q 016265          231 SAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFL  274 (392)
Q Consensus       231 ~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~  274 (392)
                      -.|+++||+||+|++|.+.++.+.. .|++|+++++++++++.+
T Consensus        10 l~~k~vlVTGas~gIG~aia~~l~~-~G~~V~~~~r~~~~~~~~   52 (252)
T 3f1l_A           10 LNDRIILVTGASDGIGREAAMTYAR-YGATVILLGRNEEKLRQV   52 (252)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHH
T ss_pred             cCCCEEEEeCCCChHHHHHHHHHHH-CCCEEEEEeCCHHHHHHH
Confidence            3578999999999999998776666 499999999988776544

>3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV}

Probab=96.87  E-value=0.0058  Score=55.32  Aligned_cols=73  Identities=15%  Similarity=0.141  Sum_probs=49.3

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccH-HHHHhcCCcEE-EeCCCCc-ccc-------CCCCccEEE
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNL-EFLKSLGADLA-IDYTKDN-FED-------LPEKFDVVY  301 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~-~~~~~~G~~~v-i~~~~~~-~~~-------~~~~~D~vi  301 (392)
                      .|+++||+||+|++|.+.++.+.. .|++|+++++++++. +.+++.++..+ .|..+.. +.+       ..+++|++|
T Consensus        26 ~~k~vlVTGas~gIG~aia~~l~~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD~lv  104 (260)
T 3gem_A           26 SSAPILITGASQRVGLHCALRLLE-HGHRVIISYRTEHASVTELRQAGAVALYGDFSCETGIMAFIDLLKTQTSSLRAVV  104 (260)
T ss_dssp             -CCCEEESSTTSHHHHHHHHHHHH-TTCCEEEEESSCCHHHHHHHHHTCEEEECCTTSHHHHHHHHHHHHHHCSCCSEEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHH-CCCEEEEEeCChHHHHHHHHhcCCeEEECCCCCHHHHHHHHHHHHHhcCCCCEEE
Confidence            478999999999999998877666 499999999877653 44555664322 2332221 111       124789999


Q ss_pred             ecCc
Q 016265          302 DAIG  305 (392)
Q Consensus       302 d~~G  305 (392)
                      ++.|
T Consensus       105 ~nAg  108 (260)
T 3gem_A          105 HNAS  108 (260)
T ss_dssp             ECCC
T ss_pred             ECCC
Confidence            9877

>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0

Probab=96.84  E-value=0.0056  Score=56.44  Aligned_cols=74  Identities=16%  Similarity=0.213  Sum_probs=48.7

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHH----HhcCC-c-EE--EeCCCC-c-ccc-------C
Q 016265          231 SAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFL----KSLGA-D-LA--IDYTKD-N-FED-------L  293 (392)
Q Consensus       231 ~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~----~~~G~-~-~v--i~~~~~-~-~~~-------~  293 (392)
                      ..+.+|||+||+|++|.+.+..+.. .|++|++++++.++.+.+    ++.+. . ..  .|..+. . ...       .
T Consensus        10 ~~~k~vlITGas~GIG~~~a~~L~~-~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~v~~~~~~~~~~   88 (311)
T 3o26_A           10 TKRRCAVVTGGNKGIGFEICKQLSS-NGIMVVLTCRDVTKGHEAVEKLKNSNHENVVFHQLDVTDPIATMSSLADFIKTH   88 (311)
T ss_dssp             --CCEEEESSCSSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHHTTTCCSEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred             CCCcEEEEecCCchHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEEccCCCcHHHHHHHHHHHHHh
Confidence            3578999999999999998777666 499999999988775443    22332 1 12  233332 1 111       1


Q ss_pred             CCCccEEEecCc
Q 016265          294 PEKFDVVYDAIG  305 (392)
Q Consensus       294 ~~~~D~vid~~G  305 (392)
                      .+++|++|++.|
T Consensus        89 ~g~iD~lv~nAg  100 (311)
T 3o26_A           89 FGKLDILVNNAG  100 (311)
T ss_dssp             HSSCCEEEECCC
T ss_pred             CCCCCEEEECCc
Confidence            247999999987

>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis}

Probab=96.84  E-value=0.0051  Score=56.27  Aligned_cols=73  Identities=19%  Similarity=0.237  Sum_probs=50.3

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHH-HhcCCc-EEE--eCCCCc-ccc-------CCCCccE
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFL-KSLGAD-LAI--DYTKDN-FED-------LPEKFDV  299 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~-~~~G~~-~vi--~~~~~~-~~~-------~~~~~D~  299 (392)
                      .|+++||+||+|++|.+.++.+.. .|++|+++++++++.+.+ +++|.. ..+  |..+.. ..+       .-+++|+
T Consensus        28 ~gk~vlVTGas~gIG~aia~~la~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~  106 (277)
T 3gvc_A           28 AGKVAIVTGAGAGIGLAVARRLAD-EGCHVLCADIDGDAADAAATKIGCGAAACRVDVSDEQQIIAMVDACVAAFGGVDK  106 (277)
T ss_dssp             TTCEEEETTTTSTHHHHHHHHHHH-TTCEEEEEESSHHHHHHHHHHHCSSCEEEECCTTCHHHHHHHHHHHHHHHSSCCE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHHcCCcceEEEecCCCHHHHHHHHHHHHHHcCCCCE
Confidence            578999999999999997776666 499999999988776654 455533 222  332221 111       1237899


Q ss_pred             EEecCc
Q 016265          300 VYDAIG  305 (392)
Q Consensus       300 vid~~G  305 (392)
                      +|++.|
T Consensus       107 lvnnAg  112 (277)
T 3gvc_A          107 LVANAG  112 (277)
T ss_dssp             EEECCC
T ss_pred             EEECCC
Confidence            999977

>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli}

Probab=96.83  E-value=0.0061  Score=55.74  Aligned_cols=73  Identities=21%  Similarity=0.328  Sum_probs=50.4

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHH-HhcCCcE-EE--eCCCCc-cccC-------CCCccE
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFL-KSLGADL-AI--DYTKDN-FEDL-------PEKFDV  299 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~-~~~G~~~-vi--~~~~~~-~~~~-------~~~~D~  299 (392)
                      .|.++||+||+|++|.+.++.+.. .|++|+++++++++++.+ ++++... .+  |..+.. +.+.       -+++|+
T Consensus        26 ~~k~vlVTGas~GIG~aia~~l~~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~  104 (277)
T 4dqx_A           26 NQRVCIVTGGGSGIGRATAELFAK-NGAYVVVADVNEDAAVRVANEIGSKAFGVRVDVSSAKDAESMVEKTTAKWGRVDV  104 (277)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHH-TTCEEEEEESSHHHHHHHHHHHCTTEEEEECCTTCHHHHHHHHHHHHHHHSCCCE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHHhCCceEEEEecCCCHHHHHHHHHHHHHHcCCCCE
Confidence            578999999999999998777666 499999999988776554 3455432 22  322211 1111       237899


Q ss_pred             EEecCc
Q 016265          300 VYDAIG  305 (392)
Q Consensus       300 vid~~G  305 (392)
                      +|++.|
T Consensus       105 lv~nAg  110 (277)
T 4dqx_A          105 LVNNAG  110 (277)
T ss_dssp             EEECCC
T ss_pred             EEECCC
Confidence            999977

>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti}

Probab=96.83  E-value=0.0048  Score=56.14  Aligned_cols=94  Identities=18%  Similarity=0.278  Sum_probs=58.8

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeC-CcccHHHH----HhcCCcE-EE--eCCCCc-cccC-------C
Q 016265          231 SAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATS-STRNLEFL----KSLGADL-AI--DYTKDN-FEDL-------P  294 (392)
Q Consensus       231 ~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~-~~~~~~~~----~~~G~~~-vi--~~~~~~-~~~~-------~  294 (392)
                      ..|+++||+||+|++|.+.++.... .|++|++..+ ++++.+.+    +..|... .+  |..+.. +.+.       -
T Consensus        25 ~~~k~~lVTGas~GIG~aia~~la~-~G~~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~  103 (267)
T 3u5t_A           25 ETNKVAIVTGASRGIGAAIAARLAS-DGFTVVINYAGKAAAAEEVAGKIEAAGGKALTAQADVSDPAAVRRLFATAEEAF  103 (267)
T ss_dssp             --CCEEEEESCSSHHHHHHHHHHHH-HTCEEEEEESSCSHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHH-CCCEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            3578999999999999987766555 3999988754 44444433    3445432 22  332221 1111       2


Q ss_pred             CCccEEEecCcc----------------------------HHHHHHhcccCCeEEEEcC
Q 016265          295 EKFDVVYDAIGQ----------------------------CDRAVKAIKEGGTVVALTG  325 (392)
Q Consensus       295 ~~~D~vid~~G~----------------------------~~~~~~~l~~~G~iv~~g~  325 (392)
                      +++|++|++.|.                            ++.++..++.+|+||.++.
T Consensus       104 g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~isS  162 (267)
T 3u5t_A          104 GGVDVLVNNAGIMPLTTIAETGDAVFDRVIAVNLKGTFNTLREAAQRLRVGGRIINMST  162 (267)
T ss_dssp             SCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECC
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeC
Confidence            479999999871                            1245556677899998864

>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}

Probab=96.83  E-value=0.004  Score=56.60  Aligned_cols=73  Identities=22%  Similarity=0.333  Sum_probs=49.5

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHH----HhcCCcEE---EeCCCCc-ccc-------CCCC
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFL----KSLGADLA---IDYTKDN-FED-------LPEK  296 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~----~~~G~~~v---i~~~~~~-~~~-------~~~~  296 (392)
                      .++++||+||+|++|.+.+..+.. .|++|+++++++++++.+    ++.|....   .|..+.. +.+       ..++
T Consensus         3 ~~k~~lVTGas~GIG~aia~~la~-~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~   81 (264)
T 3tfo_A            3 MDKVILITGASGGIGEGIARELGV-AGAKILLGARRQARIEAIATEIRDAGGTALAQVLDVTDRHSVAAFAQAAVDTWGR   81 (264)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHH-TTCEEEEEESSHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEeCCccHHHHHHHHHHHH-CCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            468999999999999998776666 499999999988776554    23354322   2332221 111       1247


Q ss_pred             ccEEEecCc
Q 016265          297 FDVVYDAIG  305 (392)
Q Consensus       297 ~D~vid~~G  305 (392)
                      +|++|++.|
T Consensus        82 iD~lVnnAG   90 (264)
T 3tfo_A           82 IDVLVNNAG   90 (264)
T ss_dssp             CCEEEECCC
T ss_pred             CCEEEECCC
Confidence            999999987

>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}

Probab=96.83  E-value=0.0079  Score=54.80  Aligned_cols=93  Identities=22%  Similarity=0.381  Sum_probs=60.1

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCC-cccHHH----HHhcCCcE-EE--eCCCCc-cccC-------CC
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSS-TRNLEF----LKSLGADL-AI--DYTKDN-FEDL-------PE  295 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~-~~~~~~----~~~~G~~~-vi--~~~~~~-~~~~-------~~  295 (392)
                      .|+++||+||+|++|.+.++.+.. .|++|+++++. .++.+.    +++.|... .+  |..+.. +.+.       -+
T Consensus        30 ~gk~~lVTGas~GIG~aia~~la~-~G~~V~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g  108 (271)
T 3v2g_A           30 AGKTAFVTGGSRGIGAAIAKRLAL-EGAAVALTYVNAAERAQAVVSEIEQAGGRAVAIRADNRDAEAIEQAIRETVEALG  108 (271)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHH-TTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHH-CCCEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            578999999999999997776666 49999888654 344333    23445432 22  222211 1111       23


Q ss_pred             CccEEEecCcc----------------------------HHHHHHhcccCCeEEEEcC
Q 016265          296 KFDVVYDAIGQ----------------------------CDRAVKAIKEGGTVVALTG  325 (392)
Q Consensus       296 ~~D~vid~~G~----------------------------~~~~~~~l~~~G~iv~~g~  325 (392)
                      ++|++|++.|.                            ++.++..++++|+||.++.
T Consensus       109 ~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~g~iv~isS  166 (271)
T 3v2g_A          109 GLDILVNSAGIWHSAPLEETTVADFDEVMAVNFRAPFVAIRSASRHLGDGGRIITIGS  166 (271)
T ss_dssp             CCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECC
T ss_pred             CCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence            78999998761                            1345556778999998865

>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2

Probab=96.82  E-value=0.0054  Score=55.95  Aligned_cols=73  Identities=26%  Similarity=0.397  Sum_probs=49.0

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHH----HhcCC-c--EEE--eCCCCc-cccC-------C
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFL----KSLGA-D--LAI--DYTKDN-FEDL-------P  294 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~----~~~G~-~--~vi--~~~~~~-~~~~-------~  294 (392)
                      .+.++||+||+|++|...++.+.. .|++|++++++.++.+.+    ++.|. .  .++  |..+.. +.+.       .
T Consensus        31 ~~k~vlVTGasggIG~~la~~l~~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~  109 (279)
T 1xg5_A           31 RDRLALVTGASGGIGAAVARALVQ-QGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQH  109 (279)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHH-CCCEEEEEECChHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHhC
Confidence            478999999999999998887766 499999999887765543    23342 1  122  332221 1111       1


Q ss_pred             CCccEEEecCc
Q 016265          295 EKFDVVYDAIG  305 (392)
Q Consensus       295 ~~~D~vid~~G  305 (392)
                      +++|++|++.|
T Consensus       110 g~iD~vi~~Ag  120 (279)
T 1xg5_A          110 SGVDICINNAG  120 (279)
T ss_dssp             CCCSEEEECCC
T ss_pred             CCCCEEEECCC
Confidence            37999999876

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=96.80  E-value=0.0042  Score=56.06  Aligned_cols=119  Identities=19%  Similarity=0.253  Sum_probs=70.9

Q ss_pred             CceeeCCCCCCHHhHhccchhHHHHHHHHHhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHh
Q 016265          197 RLLAPKPKNLDFVQAAGLPLAIETAYEGLERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKS  276 (392)
Q Consensus       197 ~~~~~iP~~l~~~~aa~l~~~~~ta~~al~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~  276 (392)
                      ...+.+++++.+....--...  .....+... ++++++||-+| +|. |..++.+++.  |++++.++.++...+.+++
T Consensus        88 ~~~~~l~p~~~fgtg~~~tt~--~~~~~l~~~-~~~~~~VLDiG-cG~-G~l~~~la~~--g~~v~gvDi~~~~v~~a~~  160 (254)
T 2nxc_A           88 EIPLVIEPGMAFGTGHHETTR--LALKALARH-LRPGDKVLDLG-TGS-GVLAIAAEKL--GGKALGVDIDPMVLPQAEA  160 (254)
T ss_dssp             SEEEECCCC-----CCSHHHH--HHHHHHHHH-CCTTCEEEEET-CTT-SHHHHHHHHT--TCEEEEEESCGGGHHHHHH
T ss_pred             ceEEEECCCccccCCCCHHHH--HHHHHHHHh-cCCCCEEEEec-CCC-cHHHHHHHHh--CCeEEEEECCHHHHHHHHH
Confidence            344566666554332211111  122334433 67899999998 665 8888888874  7789999999988877754


Q ss_pred             ----cCCcEEEeCCCCcccc-C-CCCccEEEecCc------cHHHHHHhcccCCeEEEEc
Q 016265          277 ----LGADLAIDYTKDNFED-L-PEKFDVVYDAIG------QCDRAVKAIKEGGTVVALT  324 (392)
Q Consensus       277 ----~G~~~vi~~~~~~~~~-~-~~~~D~vid~~G------~~~~~~~~l~~~G~iv~~g  324 (392)
                          .|.+  +.....++.+ . .+.+|+|+...-      .+..+.++|++||+++..+
T Consensus       161 n~~~~~~~--v~~~~~d~~~~~~~~~fD~Vv~n~~~~~~~~~l~~~~~~LkpgG~lils~  218 (254)
T 2nxc_A          161 NAKRNGVR--PRFLEGSLEAALPFGPFDLLVANLYAELHAALAPRYREALVPGGRALLTG  218 (254)
T ss_dssp             HHHHTTCC--CEEEESCHHHHGGGCCEEEEEEECCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             HHHHcCCc--EEEEECChhhcCcCCCCCEEEECCcHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence                3443  1111112211 2 347999996542      2467888999999998753

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=96.80  E-value=0.004  Score=53.45  Aligned_cols=99  Identities=15%  Similarity=0.171  Sum_probs=66.3

Q ss_pred             HHhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhc-CCeEEEEeCCcccHHHHHh----cCC-c--EEEeCCCCccc-cCCC
Q 016265          225 LERTGFSAGKSILVLNGSGGVGSLVIQLAKQVF-GASRVAATSSTRNLEFLKS----LGA-D--LAIDYTKDNFE-DLPE  295 (392)
Q Consensus       225 l~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~-G~~vv~~~~~~~~~~~~~~----~G~-~--~vi~~~~~~~~-~~~~  295 (392)
                      +....+++|++||-.| +|. |..+..+++... +.+++.++.+++.++.+++    .|. +  .++..+-..+. ...+
T Consensus        15 ~~~~~~~~~~~vLDlG-cG~-G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~   92 (197)
T 3eey_A           15 YIKMFVKEGDTVVDAT-CGN-GNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDC   92 (197)
T ss_dssp             HHHHHCCTTCEEEESC-CTT-SHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTCCS
T ss_pred             HHHhcCCCCCEEEEcC-CCC-CHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhccC
Confidence            3344678899999997 555 888899998741 2588899999888777654    343 1  22222222232 2345


Q ss_pred             CccEEEecCc------------------cHHHHHHhcccCCeEEEEcC
Q 016265          296 KFDVVYDAIG------------------QCDRAVKAIKEGGTVVALTG  325 (392)
Q Consensus       296 ~~D~vid~~G------------------~~~~~~~~l~~~G~iv~~g~  325 (392)
                      .+|+|+...+                  .+..+.++|++||+++....
T Consensus        93 ~fD~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~  140 (197)
T 3eey_A           93 PVKAVMFNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIY  140 (197)
T ss_dssp             CEEEEEEEESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             CceEEEEcCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEc
Confidence            7999986542                  25788889999999987643

>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*

Probab=96.79  E-value=0.0079  Score=55.53  Aligned_cols=73  Identities=16%  Similarity=0.201  Sum_probs=48.2

Q ss_pred             CCCeEEEEcCCC--cHHHHHHHHHHHhcCCeEEEEeCCcccHHHH----HhcCCcEEEe--CCCCc-cccC-------CC
Q 016265          232 AGKSILVLNGSG--GVGSLVIQLAKQVFGASRVAATSSTRNLEFL----KSLGADLAID--YTKDN-FEDL-------PE  295 (392)
Q Consensus       232 ~g~~VlI~Ga~G--~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~----~~~G~~~vi~--~~~~~-~~~~-------~~  295 (392)
                      .|+++||+||+|  ++|.+.++.+.. .|++|++++++++..+.+    ++.|....+.  ..+.. +.+.       -+
T Consensus        29 ~~k~vlVTGasg~~GIG~~ia~~la~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g  107 (296)
T 3k31_A           29 EGKKGVIIGVANDKSLAWGIAKAVCA-QGAEVALTYLSETFKKRVDPLAESLGVKLTVPCDVSDAESVDNMFKVLAEEWG  107 (296)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHH-TTCEEEEEESSGGGHHHHHHHHHHHTCCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEEeCCCCCCHHHHHHHHHHH-CCCEEEEEeCChHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            578999999887  999987776656 499999999887654433    3345434433  22221 1111       24


Q ss_pred             CccEEEecCc
Q 016265          296 KFDVVYDAIG  305 (392)
Q Consensus       296 ~~D~vid~~G  305 (392)
                      ++|++|++.|
T Consensus       108 ~iD~lVnnAG  117 (296)
T 3k31_A          108 SLDFVVHAVA  117 (296)
T ss_dssp             CCSEEEECCC
T ss_pred             CCCEEEECCC
Confidence            7899999876

>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}

Probab=96.76  E-value=0.0062  Score=56.38  Aligned_cols=74  Identities=24%  Similarity=0.330  Sum_probs=50.4

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHH----HhcCCcE-EE--eCCCCc-cccC-------CC
Q 016265          231 SAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFL----KSLGADL-AI--DYTKDN-FEDL-------PE  295 (392)
Q Consensus       231 ~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~----~~~G~~~-vi--~~~~~~-~~~~-------~~  295 (392)
                      -.|++|||+||+|++|...+..+.. .|++|++++++.++++.+    ++.|... .+  |..+.+ +.+.       .+
T Consensus        29 l~gk~vlVTGas~gIG~~la~~l~~-~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g  107 (301)
T 3tjr_A           29 FDGRAAVVTGGASGIGLATATEFAR-RGARLVLSDVDQPALEQAVNGLRGQGFDAHGVVCDVRHLDEMVRLADEAFRLLG  107 (301)
T ss_dssp             STTCEEEEETTTSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHH-CCCEEEEEECCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHhCC
Confidence            3678999999999999987776666 499999999988876554    2334332 22  332221 1111       23


Q ss_pred             CccEEEecCc
Q 016265          296 KFDVVYDAIG  305 (392)
Q Consensus       296 ~~D~vid~~G  305 (392)
                      ++|++|++.|
T Consensus       108 ~id~lvnnAg  117 (301)
T 3tjr_A          108 GVDVVFSNAG  117 (301)
T ss_dssp             SCSEEEECCC
T ss_pred             CCCEEEECCC
Confidence            7999999977

>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A*

Probab=96.74  E-value=0.01  Score=54.66  Aligned_cols=94  Identities=26%  Similarity=0.283  Sum_probs=60.0

Q ss_pred             CCCCeEEEEcCCCc--HHHHHHHHHHHhcCCeEEEEeCCcccHHHH----HhcCCcEEE--eCCCCc-ccc-------CC
Q 016265          231 SAGKSILVLNGSGG--VGSLVIQLAKQVFGASRVAATSSTRNLEFL----KSLGADLAI--DYTKDN-FED-------LP  294 (392)
Q Consensus       231 ~~g~~VlI~Ga~G~--vG~~aiqlak~~~G~~vv~~~~~~~~~~~~----~~~G~~~vi--~~~~~~-~~~-------~~  294 (392)
                      -.|+++||+||+|+  +|.+.++.+.. .|++|+++.++++..+.+    ++.+....+  |..+.. +.+       .-
T Consensus        29 l~gk~~lVTGasg~~GIG~aia~~la~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~  107 (293)
T 3grk_A           29 LQGKRGLILGVANNRSIAWGIAKAARE-AGAELAFTYQGDALKKRVEPLAEELGAFVAGHCDVADAASIDAVFETLEKKW  107 (293)
T ss_dssp             TTTCEEEEECCCSSSSHHHHHHHHHHH-TTCEEEEEECSHHHHHHHHHHHHHHTCEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             CCCCEEEEEcCCCCCcHHHHHHHHHHH-CCCEEEEEcCCHHHHHHHHHHHHhcCCceEEECCCCCHHHHHHHHHHHHHhc
Confidence            46889999999866  99987776666 499999988875433333    334433333  322221 111       12


Q ss_pred             CCccEEEecCcc--------------------------------HHHHHHhcccCCeEEEEcC
Q 016265          295 EKFDVVYDAIGQ--------------------------------CDRAVKAIKEGGTVVALTG  325 (392)
Q Consensus       295 ~~~D~vid~~G~--------------------------------~~~~~~~l~~~G~iv~~g~  325 (392)
                      +++|++|++.|.                                .+.++..++++|+||.++.
T Consensus       108 g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~Iv~isS  170 (293)
T 3grk_A          108 GKLDFLVHAIGFSDKDELTGRYIDTSEANFTNTMLISVYSLTAVSRRAEKLMADGGSILTLTY  170 (293)
T ss_dssp             SCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCEEEEEEEC
T ss_pred             CCCCEEEECCccCCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEEEee
Confidence            479999998761                                1234555677899998864

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=96.73  E-value=0.0054  Score=54.12  Aligned_cols=94  Identities=14%  Similarity=0.169  Sum_probs=64.5

Q ss_pred             CCCCCCeEEEEcCCCcHHHHHHHHHHHhcC-------CeEEEEeCCcccHHHHHhc----C-------CcEEEeCCCCcc
Q 016265          229 GFSAGKSILVLNGSGGVGSLVIQLAKQVFG-------ASRVAATSSTRNLEFLKSL----G-------ADLAIDYTKDNF  290 (392)
Q Consensus       229 ~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G-------~~vv~~~~~~~~~~~~~~~----G-------~~~vi~~~~~~~  290 (392)
                      .++++++||-+| +|. |..+..+++.. +       .+++.++.+++..+.+++.    |       .-.++..+....
T Consensus        81 ~~~~~~~VLdiG-~G~-G~~~~~la~~~-~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~  157 (227)
T 1r18_A           81 HLKPGARILDVG-SGS-GYLTACFYRYI-KAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKG  157 (227)
T ss_dssp             TCCTTCEEEEES-CTT-SHHHHHHHHHH-HHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGC
T ss_pred             hCCCCCEEEEEC-CCc-cHHHHHHHHhc-ccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCcccC
Confidence            578999999998 665 98999999874 5       4899999998877776542    2       112222211111


Q ss_pred             ccCCCCccEEEecCc---cHHHHHHhcccCCeEEEEcC
Q 016265          291 EDLPEKFDVVYDAIG---QCDRAVKAIKEGGTVVALTG  325 (392)
Q Consensus       291 ~~~~~~~D~vid~~G---~~~~~~~~l~~~G~iv~~g~  325 (392)
                      ....+.||+|+....   ..+.+.+.|++||+++..-.
T Consensus       158 ~~~~~~fD~I~~~~~~~~~~~~~~~~LkpgG~lvi~~~  195 (227)
T 1r18_A          158 YPPNAPYNAIHVGAAAPDTPTELINQLASGGRLIVPVG  195 (227)
T ss_dssp             CGGGCSEEEEEECSCBSSCCHHHHHTEEEEEEEEEEES
T ss_pred             CCcCCCccEEEECCchHHHHHHHHHHhcCCCEEEEEEe
Confidence            111247999997755   35889999999999887644

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=96.73  E-value=0.0047  Score=55.29  Aligned_cols=95  Identities=22%  Similarity=0.230  Sum_probs=66.1

Q ss_pred             HHhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHh----cCCc---EEEeCCCCccccCCCCc
Q 016265          225 LERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKS----LGAD---LAIDYTKDNFEDLPEKF  297 (392)
Q Consensus       225 l~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~----~G~~---~vi~~~~~~~~~~~~~~  297 (392)
                      +....++++++||-+| +|. |..+..+++.. |.+++.++.++..++.+++    .|..   .++..+-.+... .+.|
T Consensus        29 ~~~~~~~~~~~VLDiG-cG~-G~~~~~la~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~-~~~f  104 (256)
T 1nkv_A           29 GRVLRMKPGTRILDLG-SGS-GEMLCTWARDH-GITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVA-NEKC  104 (256)
T ss_dssp             HHHTCCCTTCEEEEET-CTT-CHHHHHHHHHT-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCC-SSCE
T ss_pred             HHhcCCCCCCEEEEEC-CCC-CHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHhCCc-CCCC
Confidence            4566788999999998 555 88899999884 8899999999887777643    3432   122222112211 4579


Q ss_pred             cEEEecCc---------cHHHHHHhcccCCeEEEE
Q 016265          298 DVVYDAIG---------QCDRAVKAIKEGGTVVAL  323 (392)
Q Consensus       298 D~vid~~G---------~~~~~~~~l~~~G~iv~~  323 (392)
                      |+|+..--         .+..+.++|+|||+++..
T Consensus       105 D~V~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~  139 (256)
T 1nkv_A          105 DVAACVGATWIAGGFAGAEELLAQSLKPGGIMLIG  139 (256)
T ss_dssp             EEEEEESCGGGTSSSHHHHHHHTTSEEEEEEEEEE
T ss_pred             CEEEECCChHhcCCHHHHHHHHHHHcCCCeEEEEe
Confidence            99985311         157788899999998875

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=96.71  E-value=0.007  Score=56.51  Aligned_cols=98  Identities=21%  Similarity=0.274  Sum_probs=67.9

Q ss_pred             HHHhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhc-CCeEEEEeCCcccHHHHHh----cCCcEEEeCCCCcccc---CCC
Q 016265          224 GLERTGFSAGKSILVLNGSGGVGSLVIQLAKQVF-GASRVAATSSTRNLEFLKS----LGADLAIDYTKDNFED---LPE  295 (392)
Q Consensus       224 al~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~-G~~vv~~~~~~~~~~~~~~----~G~~~vi~~~~~~~~~---~~~  295 (392)
                      .++...+++|++||-+| +|. |..+..+++... +.+++.++.+++.++.+++    .|.+. +.....+..+   ..+
T Consensus        67 l~~~l~~~~~~~VLDiG-cG~-G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~-v~~~~~d~~~~~~~~~  143 (317)
T 1dl5_A           67 FMEWVGLDKGMRVLEIG-GGT-GYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIEN-VIFVCGDGYYGVPEFS  143 (317)
T ss_dssp             HHHHTTCCTTCEEEEEC-CTT-SHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCS-EEEEESCGGGCCGGGC
T ss_pred             HHHhcCCCCcCEEEEec-CCc-hHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCC-eEEEECChhhccccCC
Confidence            34567789999999998 666 889999998742 2459999999988877754    35432 2211112222   135


Q ss_pred             CccEEEecCc---cHHHHHHhcccCCeEEEEc
Q 016265          296 KFDVVYDAIG---QCDRAVKAIKEGGTVVALT  324 (392)
Q Consensus       296 ~~D~vid~~G---~~~~~~~~l~~~G~iv~~g  324 (392)
                      .+|+|+....   ..+.+.+.|+|||+++...
T Consensus       144 ~fD~Iv~~~~~~~~~~~~~~~LkpgG~lvi~~  175 (317)
T 1dl5_A          144 PYDVIFVTVGVDEVPETWFTQLKEGGRVIVPI  175 (317)
T ss_dssp             CEEEEEECSBBSCCCHHHHHHEEEEEEEEEEB
T ss_pred             CeEEEEEcCCHHHHHHHHHHhcCCCcEEEEEE
Confidence            7999997754   2378889999999988764

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=96.71  E-value=0.0074  Score=53.05  Aligned_cols=94  Identities=15%  Similarity=0.152  Sum_probs=65.2

Q ss_pred             CCCCCCeEEEEcCCCcHHHHHHHHHHHhcC------CeEEEEeCCcccHHHHHhc----C-----Cc--EEEeCCCCccc
Q 016265          229 GFSAGKSILVLNGSGGVGSLVIQLAKQVFG------ASRVAATSSTRNLEFLKSL----G-----AD--LAIDYTKDNFE  291 (392)
Q Consensus       229 ~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G------~~vv~~~~~~~~~~~~~~~----G-----~~--~vi~~~~~~~~  291 (392)
                      .++++++||-+| +|. |..+..+++.. +      .+++.++.+++..+.+++.    |     .+  .++..+.....
T Consensus        77 ~~~~~~~VLdiG-~G~-G~~~~~la~~~-~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~  153 (227)
T 2pbf_A           77 VLKPGSRAIDVG-SGS-GYLTVCMAIKM-NVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVN  153 (227)
T ss_dssp             TSCTTCEEEEES-CTT-SHHHHHHHHHT-TTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCC
T ss_pred             hCCCCCEEEEEC-CCC-CHHHHHHHHHh-cccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhcc
Confidence            578999999998 665 89999999873 5      5899999998887777543    3     11  12222111111


Q ss_pred             ----cCCCCccEEEecCc---cHHHHHHhcccCCeEEEEcC
Q 016265          292 ----DLPEKFDVVYDAIG---QCDRAVKAIKEGGTVVALTG  325 (392)
Q Consensus       292 ----~~~~~~D~vid~~G---~~~~~~~~l~~~G~iv~~g~  325 (392)
                          ...+.||+|+....   .++.+.+.|++||+++..-.
T Consensus       154 ~~~~~~~~~fD~I~~~~~~~~~~~~~~~~LkpgG~lv~~~~  194 (227)
T 2pbf_A          154 EEEKKELGLFDAIHVGASASELPEILVDLLAENGKLIIPIE  194 (227)
T ss_dssp             HHHHHHHCCEEEEEECSBBSSCCHHHHHHEEEEEEEEEEEE
T ss_pred             cccCccCCCcCEEEECCchHHHHHHHHHhcCCCcEEEEEEc
Confidence                11347999987754   35889999999999887643

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=96.69  E-value=0.0019  Score=57.25  Aligned_cols=93  Identities=22%  Similarity=0.264  Sum_probs=63.8

Q ss_pred             CCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHh----cCCcE---EEeCCCCcc-ccC--CCCcc
Q 016265          229 GFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKS----LGADL---AIDYTKDNF-EDL--PEKFD  298 (392)
Q Consensus       229 ~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~----~G~~~---vi~~~~~~~-~~~--~~~~D  298 (392)
                      ...++++||-+| +| .|..+..+++...+.+++.++.+++.++.+++    .|...   ++..+.... ...  .+.||
T Consensus        51 ~~~~~~~vLdiG-~G-~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD  128 (233)
T 2gpy_A           51 KMAAPARILEIG-TA-IGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLELYPLFD  128 (233)
T ss_dssp             HHHCCSEEEEEC-CT-TSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHTTSCCEE
T ss_pred             hccCCCEEEEec-CC-CcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhcccCCCcc
Confidence            345788999998 65 78999999987325788899999888877754    35421   222211111 122  35799


Q ss_pred             EEEecCc------cHHHHHHhcccCCeEEEE
Q 016265          299 VVYDAIG------QCDRAVKAIKEGGTVVAL  323 (392)
Q Consensus       299 ~vid~~G------~~~~~~~~l~~~G~iv~~  323 (392)
                      +|+....      .++.+.+.|++||+++..
T Consensus       129 ~I~~~~~~~~~~~~l~~~~~~L~pgG~lv~~  159 (233)
T 2gpy_A          129 VLFIDAAKGQYRRFFDMYSPMVRPGGLILSD  159 (233)
T ss_dssp             EEEEEGGGSCHHHHHHHHGGGEEEEEEEEEE
T ss_pred             EEEECCCHHHHHHHHHHHHHHcCCCeEEEEE
Confidence            9987644      147788899999999875

>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E

Probab=96.68  E-value=0.0059  Score=54.79  Aligned_cols=73  Identities=23%  Similarity=0.395  Sum_probs=50.0

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHH-hcCCc-EE--EeCCCCc-cccC-------CCCccE
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLK-SLGAD-LA--IDYTKDN-FEDL-------PEKFDV  299 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~-~~G~~-~v--i~~~~~~-~~~~-------~~~~D~  299 (392)
                      .|+++||+||+|++|.+.++.... .|++|+++++++++.+.+. .++.. ..  .|..+.. +.+.       -+++|+
T Consensus         8 ~gk~~lVTGas~gIG~a~a~~l~~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~   86 (248)
T 3op4_A            8 EGKVALVTGASRGIGKAIAELLAE-RGAKVIGTATSESGAQAISDYLGDNGKGMALNVTNPESIEAVLKAITDEFGGVDI   86 (248)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHH-TTCEEEEEESSHHHHHHHHHHHGGGEEEEECCTTCHHHHHHHHHHHHHHHCCCSE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHHhcccceEEEEeCCCHHHHHHHHHHHHHHcCCCCE
Confidence            578999999999999998877666 4999999999887766553 33322 12  2333221 1111       237999


Q ss_pred             EEecCc
Q 016265          300 VYDAIG  305 (392)
Q Consensus       300 vid~~G  305 (392)
                      +|++.|
T Consensus        87 lv~nAg   92 (248)
T 3op4_A           87 LVNNAG   92 (248)
T ss_dssp             EEECCC
T ss_pred             EEECCC
Confidence            999977

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0

Probab=96.68  E-value=0.0094  Score=54.42  Aligned_cols=35  Identities=23%  Similarity=0.217  Sum_probs=30.0

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCC
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSS  267 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~  267 (392)
                      .|++|||+||+|++|...++.... .|++|++++++
T Consensus         9 ~gk~vlVTGas~gIG~~ia~~l~~-~G~~V~~~~~~   43 (287)
T 3pxx_A            9 QDKVVLVTGGARGQGRSHAVKLAE-EGADIILFDIC   43 (287)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHH-TTCEEEEEECC
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHH-CCCeEEEEccc
Confidence            578999999999999987776666 49999998876

>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A

Probab=96.67  E-value=0.0073  Score=54.87  Aligned_cols=73  Identities=22%  Similarity=0.397  Sum_probs=51.0

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHH-HhcCCcEE-E--eCCCCc-cccC-------CCCccE
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFL-KSLGADLA-I--DYTKDN-FEDL-------PEKFDV  299 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~-~~~G~~~v-i--~~~~~~-~~~~-------~~~~D~  299 (392)
                      .|+++||+||+|++|.+.++.... .|++|+++++++++++.+ +++|.... +  |..+.. +.+.       .+++|+
T Consensus        26 ~gk~vlVTGas~gIG~aia~~la~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~  104 (266)
T 3grp_A           26 TGRKALVTGATGGIGEAIARCFHA-QGAIVGLHGTREDKLKEIAADLGKDVFVFSANLSDRKSIKQLAEVAEREMEGIDI  104 (266)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHCSSEEEEECCTTSHHHHHHHHHHHHHHHTSCCE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHHhCCceEEEEeecCCHHHHHHHHHHHHHHcCCCCE
Confidence            578999999999999998877666 499999999888776654 45664432 2  222211 1111       247999


Q ss_pred             EEecCc
Q 016265          300 VYDAIG  305 (392)
Q Consensus       300 vid~~G  305 (392)
                      +|++.|
T Consensus       105 lvnnAg  110 (266)
T 3grp_A          105 LVNNAG  110 (266)
T ss_dssp             EEECCC
T ss_pred             EEECCC
Confidence            999987

>3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A*

Probab=96.67  E-value=0.007  Score=53.83  Aligned_cols=73  Identities=22%  Similarity=0.259  Sum_probs=50.0

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHH-hcCCcEEE--eCCCCc-ccc---CCCCccEEEecC
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLK-SLGADLAI--DYTKDN-FED---LPEKFDVVYDAI  304 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~-~~G~~~vi--~~~~~~-~~~---~~~~~D~vid~~  304 (392)
                      +|++|||+||+|++|...++.+.. .|++|+++++++++++.+. ++....++  |..+.. +.+   ..+++|++|++.
T Consensus         6 ~~k~vlITGasggiG~~~a~~l~~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~id~vi~~A   84 (244)
T 3d3w_A            6 AGRRVLVTGAGKGIGRGTVQALHA-TGARVVAVSRTQADLDSLVRECPGIEPVCVDLGDWEATERALGSVGPVDLLVNNA   84 (244)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHHSTTCEEEECCTTCHHHHHHHHTTCCCCCEEEECC
T ss_pred             CCcEEEEECCCcHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHHcCCCCEEEEeCCCHHHHHHHHHHcCCCCEEEECC
Confidence            578999999999999998887776 4999999998887766543 33222333  322211 111   123689999997


Q ss_pred             c
Q 016265          305 G  305 (392)
Q Consensus       305 G  305 (392)
                      |
T Consensus        85 g   85 (244)
T 3d3w_A           85 A   85 (244)
T ss_dssp             C
T ss_pred             c
Confidence            6

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=96.66  E-value=0.0083  Score=52.84  Aligned_cols=99  Identities=16%  Similarity=0.156  Sum_probs=68.7

Q ss_pred             HHHhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCC---c-EEEeCCCCccccCCCCccE
Q 016265          224 GLERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGA---D-LAIDYTKDNFEDLPEKFDV  299 (392)
Q Consensus       224 al~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~---~-~vi~~~~~~~~~~~~~~D~  299 (392)
                      .++...+.++++||-+| +|. |..+..+++.  +.+++.++.+++.++.+++...   . .++..+-.......+.+|+
T Consensus        62 ~~~~~~~~~~~~vLdiG-~G~-G~~~~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~fD~  137 (231)
T 1vbf_A           62 MLDELDLHKGQKVLEIG-TGI-GYYTALIAEI--VDKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYEEEKPYDR  137 (231)
T ss_dssp             HHHHTTCCTTCEEEEEC-CTT-SHHHHHHHHH--SSEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCGGGCCEEE
T ss_pred             HHHhcCCCCCCEEEEEc-CCC-CHHHHHHHHH--cCEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCcccccccCCCccE
Confidence            34566788999999998 665 8899999985  5889999999988888865421   1 2222221111112357999


Q ss_pred             EEecCc---cHHHHHHhcccCCeEEEEcCC
Q 016265          300 VYDAIG---QCDRAVKAIKEGGTVVALTGA  326 (392)
Q Consensus       300 vid~~G---~~~~~~~~l~~~G~iv~~g~~  326 (392)
                      |+....   ..+.+.+.|++||+++.....
T Consensus       138 v~~~~~~~~~~~~~~~~L~pgG~l~~~~~~  167 (231)
T 1vbf_A          138 VVVWATAPTLLCKPYEQLKEGGIMILPIGV  167 (231)
T ss_dssp             EEESSBBSSCCHHHHHTEEEEEEEEEEECS
T ss_pred             EEECCcHHHHHHHHHHHcCCCcEEEEEEcC
Confidence            997654   247889999999999877543

>4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum}

Probab=96.66  E-value=0.0079  Score=54.93  Aligned_cols=73  Identities=18%  Similarity=0.230  Sum_probs=49.0

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHH----HhcCCcE-EE--eCCCCc-cccC------CCCc
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFL----KSLGADL-AI--DYTKDN-FEDL------PEKF  297 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~----~~~G~~~-vi--~~~~~~-~~~~------~~~~  297 (392)
                      .|+++||+||+|++|.+.++.+.. .|++|+++++++++.+.+    ++.|... .+  |..+.. ..+.      ..++
T Consensus        32 ~gk~~lVTGas~GIG~aia~~la~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~g~i  110 (275)
T 4imr_A           32 RGRTALVTGSSRGIGAAIAEGLAG-AGAHVILHGVKPGSTAAVQQRIIASGGTAQELAGDLSEAGAGTDLIERAEAIAPV  110 (275)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHH-TTCEEEEEESSTTTTHHHHHHHHHTTCCEEEEECCTTSTTHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHH-CCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEEecCCCHHHHHHHHHHHHHhCCC
Confidence            578999999999999998777666 499999999877765443    2334332 22  322221 1111      1478


Q ss_pred             cEEEecCc
Q 016265          298 DVVYDAIG  305 (392)
Q Consensus       298 D~vid~~G  305 (392)
                      |++|++.|
T Consensus       111 D~lvnnAg  118 (275)
T 4imr_A          111 DILVINAS  118 (275)
T ss_dssp             CEEEECCC
T ss_pred             CEEEECCC
Confidence            99999877

>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii}

Probab=96.65  E-value=0.0037  Score=58.24  Aligned_cols=85  Identities=20%  Similarity=0.305  Sum_probs=66.0

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCCccccCCCCccEEEecCcc-----
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFEDLPEKFDVVYDAIGQ-----  306 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~~~~~~~D~vid~~G~-----  306 (392)
                      .|.+|.|+| .|.+|...++.++. +|.+|++.+++.++ +.+.++|++..      +..+..+..|+|+.++..     
T Consensus       141 ~g~~vgIiG-~G~IG~~~A~~l~~-~G~~V~~~d~~~~~-~~~~~~g~~~~------~l~ell~~aDvV~l~~p~~~~t~  211 (307)
T 1wwk_A          141 EGKTIGIIG-FGRIGYQVAKIANA-LGMNILLYDPYPNE-ERAKEVNGKFV------DLETLLKESDVVTIHVPLVESTY  211 (307)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHH-TTCEEEEECSSCCH-HHHHHTTCEEC------CHHHHHHHCSEEEECCCCSTTTT
T ss_pred             CCceEEEEc-cCHHHHHHHHHHHH-CCCEEEEECCCCCh-hhHhhcCcccc------CHHHHHhhCCEEEEecCCChHHh
Confidence            578999998 99999999999998 69999999887766 56677886431      233444568999998651     


Q ss_pred             --H-HHHHHhcccCCeEEEEcC
Q 016265          307 --C-DRAVKAIKEGGTVVALTG  325 (392)
Q Consensus       307 --~-~~~~~~l~~~G~iv~~g~  325 (392)
                        + ...++.+++++.++.++.
T Consensus       212 ~li~~~~l~~mk~ga~lin~ar  233 (307)
T 1wwk_A          212 HLINEERLKLMKKTAILINTSR  233 (307)
T ss_dssp             TCBCHHHHHHSCTTCEEEECSC
T ss_pred             hhcCHHHHhcCCCCeEEEECCC
Confidence              2 567889999999988764

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=96.64  E-value=0.011  Score=51.99  Aligned_cols=95  Identities=15%  Similarity=0.148  Sum_probs=64.5

Q ss_pred             CCCCCCeEEEEcCCCcHHHHHHHHHHHhcC--CeEEEEeCCcccHHHHHh----cCC-----c--EEEeCCCCccccCCC
Q 016265          229 GFSAGKSILVLNGSGGVGSLVIQLAKQVFG--ASRVAATSSTRNLEFLKS----LGA-----D--LAIDYTKDNFEDLPE  295 (392)
Q Consensus       229 ~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G--~~vv~~~~~~~~~~~~~~----~G~-----~--~vi~~~~~~~~~~~~  295 (392)
                      .++++++||-+| +|. |..+..+++.. |  .+++.++.++..++.+++    .|.     +  .++..+.........
T Consensus        74 ~~~~~~~vLDiG-~G~-G~~~~~la~~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  150 (226)
T 1i1n_A           74 QLHEGAKALDVG-SGS-GILTACFARMV-GCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEA  150 (226)
T ss_dssp             TSCTTCEEEEET-CTT-SHHHHHHHHHH-CTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGC
T ss_pred             hCCCCCEEEEEc-CCc-CHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCcccCC
Confidence            378999999998 664 88888999874 5  588999999888777653    221     1  122211111111134


Q ss_pred             CccEEEecCc---cHHHHHHhcccCCeEEEEcCC
Q 016265          296 KFDVVYDAIG---QCDRAVKAIKEGGTVVALTGA  326 (392)
Q Consensus       296 ~~D~vid~~G---~~~~~~~~l~~~G~iv~~g~~  326 (392)
                      .||+|+....   .++.+.++|++||+++..-..
T Consensus       151 ~fD~i~~~~~~~~~~~~~~~~LkpgG~lv~~~~~  184 (226)
T 1i1n_A          151 PYDAIHVGAAAPVVPQALIDQLKPGGRLILPVGP  184 (226)
T ss_dssp             CEEEEEECSBBSSCCHHHHHTEEEEEEEEEEESC
T ss_pred             CcCEEEECCchHHHHHHHHHhcCCCcEEEEEEec
Confidence            6999987654   358899999999999876443

>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis}

Probab=96.64  E-value=0.0081  Score=54.49  Aligned_cols=73  Identities=21%  Similarity=0.316  Sum_probs=48.1

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHH----HhcC--CcE-EE--eCCCCc-cc---cCCCCcc
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFL----KSLG--ADL-AI--DYTKDN-FE---DLPEKFD  298 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~----~~~G--~~~-vi--~~~~~~-~~---~~~~~~D  298 (392)
                      .|+++||+||+|++|.+.++.... .|++|+++++++++.+.+    ++.+  ... .+  |..+.. +.   +.-+++|
T Consensus         9 ~~k~~lVTGas~gIG~aia~~l~~-~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~g~id   87 (267)
T 3t4x_A            9 KGKTALVTGSTAGIGKAIATSLVA-EGANVLINGRREENVNETIKEIRAQYPDAILQPVVADLGTEQGCQDVIEKYPKVD   87 (267)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHH-TTCEEEEEESSHHHHHHHHHHHHHHCTTCEEEEEECCTTSHHHHHHHHHHCCCCS
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEecCCCCHHHHHHHHHhcCCCC
Confidence            478999999999999998776666 499999999887765443    2222  211 12  222211 11   1134799


Q ss_pred             EEEecCc
Q 016265          299 VVYDAIG  305 (392)
Q Consensus       299 ~vid~~G  305 (392)
                      ++|++.|
T Consensus        88 ~lv~nAg   94 (267)
T 3t4x_A           88 ILINNLG   94 (267)
T ss_dssp             EEEECCC
T ss_pred             EEEECCC
Confidence            9999987

>2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A*

Probab=96.62  E-value=0.008  Score=54.72  Aligned_cols=73  Identities=15%  Similarity=0.199  Sum_probs=47.2

Q ss_pred             CCCeEEEEcCC--CcHHHHHHHHHHHhcCCeEEEEeCCcc---cHHHHH-hcCCcEEE--eCCCCc-ccc-------CCC
Q 016265          232 AGKSILVLNGS--GGVGSLVIQLAKQVFGASRVAATSSTR---NLEFLK-SLGADLAI--DYTKDN-FED-------LPE  295 (392)
Q Consensus       232 ~g~~VlI~Ga~--G~vG~~aiqlak~~~G~~vv~~~~~~~---~~~~~~-~~G~~~vi--~~~~~~-~~~-------~~~  295 (392)
                      .|.++||+||+  |++|...++.+.. .|++|++++++++   ..+.++ +.|...++  |..+.. +.+       ..+
T Consensus         5 ~~k~vlVTGas~~~gIG~~~a~~l~~-~G~~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g   83 (275)
T 2pd4_A            5 KGKKGLIVGVANNKSIAYGIAQSCFN-QGATLAFTYLNESLEKRVRPIAQELNSPYVYELDVSKEEHFKSLYNSVKKDLG   83 (275)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHT-TTCEEEEEESSTTTHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHHHTS
T ss_pred             CCCEEEEECCCCCCcHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            47899999998  9999998877766 4999999988765   333333 23422233  333221 111       124


Q ss_pred             CccEEEecCc
Q 016265          296 KFDVVYDAIG  305 (392)
Q Consensus       296 ~~D~vid~~G  305 (392)
                      ++|++|++.|
T Consensus        84 ~id~lv~nAg   93 (275)
T 2pd4_A           84 SLDFIVHSVA   93 (275)
T ss_dssp             CEEEEEECCC
T ss_pred             CCCEEEECCc
Confidence            7899999875

>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}

Probab=96.62  E-value=0.00075  Score=60.15  Aligned_cols=93  Identities=13%  Similarity=0.181  Sum_probs=60.4

Q ss_pred             CCeEEEEcCCCcHHHHHHHHHHHhcC-CeEEEEeCCcccHHHHHhcCCcEE-EeCCC-CccccCCCCccEEEecCcc---
Q 016265          233 GKSILVLNGSGGVGSLVIQLAKQVFG-ASRVAATSSTRNLEFLKSLGADLA-IDYTK-DNFEDLPEKFDVVYDAIGQ---  306 (392)
Q Consensus       233 g~~VlI~Ga~G~vG~~aiqlak~~~G-~~vv~~~~~~~~~~~~~~~G~~~v-i~~~~-~~~~~~~~~~D~vid~~G~---  306 (392)
                      ..+|||+||+|++|...++.+.. .| .+|+++++++++.+.+...++..+ .|..+ +.+.+..+++|+||.+.|.   
T Consensus        23 mk~vlVtGatG~iG~~l~~~L~~-~G~~~V~~~~R~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~D~vv~~a~~~~~  101 (236)
T 3qvo_A           23 MKNVLILGAGGQIARHVINQLAD-KQTIKQTLFARQPAKIHKPYPTNSQIIMGDVLNHAALKQAMQGQDIVYANLTGEDL  101 (236)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHTT-CTTEEEEEEESSGGGSCSSCCTTEEEEECCTTCHHHHHHHHTTCSEEEEECCSTTH
T ss_pred             ccEEEEEeCCcHHHHHHHHHHHh-CCCceEEEEEcChhhhcccccCCcEEEEecCCCHHHHHHHhcCCCEEEEcCCCCch
Confidence            35899999999999998887766 48 788899988776543322222211 13322 1223334588999998872   


Q ss_pred             ---HHHHHHhcccC--CeEEEEcCC
Q 016265          307 ---CDRAVKAIKEG--GTVVALTGA  326 (392)
Q Consensus       307 ---~~~~~~~l~~~--G~iv~~g~~  326 (392)
                         .+.+++.++..  ++||.++..
T Consensus       102 ~~~~~~~~~~~~~~~~~~iV~iSS~  126 (236)
T 3qvo_A          102 DIQANSVIAAMKACDVKRLIFVLSL  126 (236)
T ss_dssp             HHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             hHHHHHHHHHHHHcCCCEEEEEecc
Confidence               24556666543  689888654

>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei}

Probab=96.62  E-value=0.0084  Score=54.56  Aligned_cols=73  Identities=16%  Similarity=0.255  Sum_probs=49.1

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHH----HhcCCc-EEE--eCCCCc-cccC-------CCC
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFL----KSLGAD-LAI--DYTKDN-FEDL-------PEK  296 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~----~~~G~~-~vi--~~~~~~-~~~~-------~~~  296 (392)
                      .|+++||+||+|++|.+.+..+.. .|++|+++++++++.+.+    ++.|.. ..+  |..+.. +.+.       -++
T Consensus        27 ~~k~~lVTGas~GIG~aia~~la~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~  105 (270)
T 3ftp_A           27 DKQVAIVTGASRGIGRAIALELAR-RGAMVIGTATTEAGAEGIGAAFKQAGLEGRGAVLNVNDATAVDALVESTLKEFGA  105 (270)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHH-TTCEEEEEESSHHHHHHHHHHHHHHTCCCEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEEeCCCHHHHHHHHHHHHHHcCC
Confidence            578999999999999988776656 499999999987766543    333432 222  333221 1111       237


Q ss_pred             ccEEEecCc
Q 016265          297 FDVVYDAIG  305 (392)
Q Consensus       297 ~D~vid~~G  305 (392)
                      +|++|++.|
T Consensus       106 iD~lvnnAg  114 (270)
T 3ftp_A          106 LNVLVNNAG  114 (270)
T ss_dssp             CCEEEECCC
T ss_pred             CCEEEECCC
Confidence            899999977

>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens}

Probab=96.61  E-value=0.011  Score=56.02  Aligned_cols=73  Identities=19%  Similarity=0.308  Sum_probs=48.7

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCccc-----------HHHHHhcCCcEE-E--eCCCCc-cccC---
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRN-----------LEFLKSLGADLA-I--DYTKDN-FEDL---  293 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~-----------~~~~~~~G~~~v-i--~~~~~~-~~~~---  293 (392)
                      .|+++||+||++++|.+.+..+.. .|++|+++++++++           .+.+++.|.... +  |..+.. +.+.   
T Consensus        44 ~gk~vlVTGas~GIG~aia~~La~-~Ga~Vvl~~r~~~~~~~l~~~l~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~~  122 (346)
T 3kvo_A           44 AGCTVFITGASRGIGKAIALKAAK-DGANIVIAAKTAQPHPKLLGTIYTAAEEIEAVGGKALPCIVDVRDEQQISAAVEK  122 (346)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHT-TTCEEEEEESCCSCCSSSCCCHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHH
T ss_pred             CCCEEEEeCCChHHHHHHHHHHHH-CCCEEEEEECChhhhhhhHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHH
Confidence            578999999999999997776655 49999999887654           223344554322 2  333321 1111   


Q ss_pred             ----CCCccEEEecCc
Q 016265          294 ----PEKFDVVYDAIG  305 (392)
Q Consensus       294 ----~~~~D~vid~~G  305 (392)
                          -+++|++|++.|
T Consensus       123 ~~~~~g~iDilVnnAG  138 (346)
T 3kvo_A          123 AIKKFGGIDILVNNAS  138 (346)
T ss_dssp             HHHHHSCCCEEEECCC
T ss_pred             HHHHcCCCCEEEECCC
Confidence                247999999987

>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1}

Probab=96.61  E-value=0.0058  Score=55.36  Aligned_cols=93  Identities=19%  Similarity=0.347  Sum_probs=57.9

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCccc---HHHH----HhcCCcEE-E--eCCCCc-cccC-------
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRN---LEFL----KSLGADLA-I--DYTKDN-FEDL-------  293 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~---~~~~----~~~G~~~v-i--~~~~~~-~~~~-------  293 (392)
                      .|+++||+||++++|.+.++.... .|++|+++.+....   ++.+    ++.|.... +  |..+.. ..+.       
T Consensus        10 ~~k~vlVTGas~GIG~aia~~la~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~   88 (262)
T 3ksu_A           10 KNKVIVIAGGIKNLGALTAKTFAL-ESVNLVLHYHQAKDSDTANKLKDELEDQGAKVALYQSDLSNEEEVAKLFDFAEKE   88 (262)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHTT-SSCEEEEEESCGGGHHHHHHHHHHHHTTTCEEEEEECCCCSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHH-CCCEEEEEecCccCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHH
Confidence            578999999999999987776655 49999988765433   3222    22343322 2  322211 1111       


Q ss_pred             CCCccEEEecCcc----------------------------HHHHHHhcccCCeEEEEcC
Q 016265          294 PEKFDVVYDAIGQ----------------------------CDRAVKAIKEGGTVVALTG  325 (392)
Q Consensus       294 ~~~~D~vid~~G~----------------------------~~~~~~~l~~~G~iv~~g~  325 (392)
                      -+++|++|++.|.                            .+.++..++++|++|.++.
T Consensus        89 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~isS  148 (262)
T 3ksu_A           89 FGKVDIAINTVGKVLKKPIVETSEAEFDAMDTINNKVAYFFIKQAAKHMNPNGHIITIAT  148 (262)
T ss_dssp             HCSEEEEEECCCCCCSSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEECC
T ss_pred             cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhhcCCCEEEEEec
Confidence            2479999999871                            1234445567899998864

>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444}

Probab=96.61  E-value=0.0095  Score=55.67  Aligned_cols=73  Identities=18%  Similarity=0.321  Sum_probs=49.6

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHH----hcCC--c-EEE--eCCCCc-ccc-------CC
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLK----SLGA--D-LAI--DYTKDN-FED-------LP  294 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~----~~G~--~-~vi--~~~~~~-~~~-------~~  294 (392)
                      .|.+|||+||+|++|...+..+.. .|++|++++++.++++.+.    ..|.  . .++  |..+.. +.+       ..
T Consensus         7 ~~k~vlVTGas~gIG~~la~~l~~-~G~~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~   85 (319)
T 3ioy_A            7 AGRTAFVTGGANGVGIGLVRQLLN-QGCKVAIADIRQDSIDKALATLEAEGSGPEVMGVQLDVASREGFKMAADEVEARF   85 (319)
T ss_dssp             TTCEEEEETTTSTHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             CCCEEEEcCCchHHHHHHHHHHHH-CCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEEECCCCCHHHHHHHHHHHHHhC
Confidence            578999999999999987777666 4999999999888765542    2332  2 222  332221 111       12


Q ss_pred             CCccEEEecCc
Q 016265          295 EKFDVVYDAIG  305 (392)
Q Consensus       295 ~~~D~vid~~G  305 (392)
                      +++|++|++.|
T Consensus        86 g~id~lv~nAg   96 (319)
T 3ioy_A           86 GPVSILCNNAG   96 (319)
T ss_dssp             CCEEEEEECCC
T ss_pred             CCCCEEEECCC
Confidence            47899999987

>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*

Probab=96.60  E-value=0.005  Score=55.56  Aligned_cols=74  Identities=18%  Similarity=0.212  Sum_probs=47.3

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHH----HhcCCc-EEE--eCCCC-ccccC-------CCC
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFL----KSLGAD-LAI--DYTKD-NFEDL-------PEK  296 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~----~~~G~~-~vi--~~~~~-~~~~~-------~~~  296 (392)
                      .+.+|||+||+|++|...+..+....|++|++++++.++.+.+    ++.|.. .++  |..+. .+.+.       .++
T Consensus         3 ~~k~vlITGasggIG~~~a~~L~~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~   82 (276)
T 1wma_A            3 GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYGG   82 (276)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHhcCCeEEEEeCChHHHHHHHHHHHhcCCeeEEEECCCCCHHHHHHHHHHHHHhcCC
Confidence            5789999999999999877665441399999999887665433    223422 222  32221 11111       137


Q ss_pred             ccEEEecCc
Q 016265          297 FDVVYDAIG  305 (392)
Q Consensus       297 ~D~vid~~G  305 (392)
                      +|++|.+.|
T Consensus        83 id~li~~Ag   91 (276)
T 1wma_A           83 LDVLVNNAG   91 (276)
T ss_dssp             EEEEEECCC
T ss_pred             CCEEEECCc
Confidence            999999876

>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp}

Probab=96.59  E-value=0.011  Score=54.43  Aligned_cols=94  Identities=14%  Similarity=0.272  Sum_probs=59.3

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCc--ccHHH----HHhcCCcEEE---eCCCCc-ccc-------CC
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSST--RNLEF----LKSLGADLAI---DYTKDN-FED-------LP  294 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~--~~~~~----~~~~G~~~vi---~~~~~~-~~~-------~~  294 (392)
                      .|+++||+||+|++|.+.+..... .|++|++++++.  ++.+.    +++.|....+   |..+.. +.+       ..
T Consensus        48 ~~k~vlVTGas~GIG~aia~~la~-~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~  126 (294)
T 3r3s_A           48 KDRKALVTGGDSGIGRAAAIAYAR-EGADVAINYLPAEEEDAQQVKALIEECGRKAVLLPGDLSDESFARSLVHKAREAL  126 (294)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHH-TTCEEEEECCGGGHHHHHHHHHHHHHTTCCEEECCCCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHH-CCCEEEEEeCCcchhHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHHHHHHHc
Confidence            578999999999999998776666 499998887752  22322    2345543322   222211 111       12


Q ss_pred             CCccEEEecCcc-----------------------------HHHHHHhcccCCeEEEEcCC
Q 016265          295 EKFDVVYDAIGQ-----------------------------CDRAVKAIKEGGTVVALTGA  326 (392)
Q Consensus       295 ~~~D~vid~~G~-----------------------------~~~~~~~l~~~G~iv~~g~~  326 (392)
                      +++|++|++.|.                             .+.++..++++|+||.++..
T Consensus       127 g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~Iv~isS~  187 (294)
T 3r3s_A          127 GGLDILALVAGKQTAIPEIKDLTSEQFQQTFAVNVFALFWITQEAIPLLPKGASIITTSSI  187 (294)
T ss_dssp             TCCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEECCG
T ss_pred             CCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEECCh
Confidence            478999998761                             12344556778999988653

>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2

Probab=96.58  E-value=0.0096  Score=53.87  Aligned_cols=41  Identities=20%  Similarity=0.123  Sum_probs=34.3

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHH
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEF  273 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~  273 (392)
                      .|.+++|+||+|++|...++.+.. .|++|++++++.++.+.
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~-~G~~V~~~~r~~~~~~~   46 (267)
T 2gdz_A            6 NGKVALVTGAAQGIGRAFAEALLL-KGAKVALVDWNLEAGVQ   46 (267)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHH-TTCEEEEEESCHHHHHH
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHH-CCCEEEEEECCHHHHHH
Confidence            478999999999999998887766 49999999988776543

>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis}

Probab=96.58  E-value=0.0088  Score=54.23  Aligned_cols=73  Identities=22%  Similarity=0.391  Sum_probs=49.7

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHH----h-cCCcE-EE--eCCCCc-cccC-------CC
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLK----S-LGADL-AI--DYTKDN-FEDL-------PE  295 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~----~-~G~~~-vi--~~~~~~-~~~~-------~~  295 (392)
                      .|+++||+||+|++|.+.++.+.. .|++|++++++.++++.+.    + .|... .+  |..+.. ..+.       -+
T Consensus        19 ~~k~vlVTGas~gIG~aia~~l~~-~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   97 (266)
T 4egf_A           19 DGKRALITGATKGIGADIARAFAA-AGARLVLSGRDVSELDAARRALGEQFGTDVHTVAIDLAEPDAPAELARRAAEAFG   97 (266)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTSTTHHHHHHHHHHHHHT
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHcC
Confidence            578999999999999998877666 4999999999887765442    1 34332 22  332221 1111       23


Q ss_pred             CccEEEecCc
Q 016265          296 KFDVVYDAIG  305 (392)
Q Consensus       296 ~~D~vid~~G  305 (392)
                      ++|++|++.|
T Consensus        98 ~id~lv~nAg  107 (266)
T 4egf_A           98 GLDVLVNNAG  107 (266)
T ss_dssp             SCSEEEEECC
T ss_pred             CCCEEEECCC
Confidence            7999999876

>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron}

Probab=96.58  E-value=0.0064  Score=54.67  Aligned_cols=42  Identities=21%  Similarity=0.239  Sum_probs=35.0

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHH
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFL  274 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~  274 (392)
                      .+.++||+||+|++|.+.++.+.. .|++|+++++++++++.+
T Consensus         6 ~~k~~lVTGas~GIG~aia~~l~~-~G~~V~~~~r~~~~~~~~   47 (250)
T 3nyw_A            6 QKGLAIITGASQGIGAVIAAGLAT-DGYRVVLIARSKQNLEKV   47 (250)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHH-HTCEEEEEESCHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHH-CCCEEEEEECCHHHHHHH
Confidence            478999999999999998776666 499999999988776554

>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}

Probab=96.56  E-value=0.0054  Score=53.65  Aligned_cols=89  Identities=12%  Similarity=0.207  Sum_probs=60.1

Q ss_pred             eEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEE--eCCC--CccccCCCCccEEEecCcc----
Q 016265          235 SILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAI--DYTK--DNFEDLPEKFDVVYDAIGQ----  306 (392)
Q Consensus       235 ~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi--~~~~--~~~~~~~~~~D~vid~~G~----  306 (392)
                      +|||+||+|.+|...++.+.. .|.+|+++++++++.+.+  .+. .++  |..+  +.+.+..+++|+||.+.|.    
T Consensus         2 ~ilItGatG~iG~~l~~~L~~-~g~~V~~~~R~~~~~~~~--~~~-~~~~~D~~d~~~~~~~~~~~~d~vi~~ag~~~~~   77 (219)
T 3dqp_A            2 KIFIVGSTGRVGKSLLKSLST-TDYQIYAGARKVEQVPQY--NNV-KAVHFDVDWTPEEMAKQLHGMDAIINVSGSGGKS   77 (219)
T ss_dssp             EEEEESTTSHHHHHHHHHHTT-SSCEEEEEESSGGGSCCC--TTE-EEEECCTTSCHHHHHTTTTTCSEEEECCCCTTSS
T ss_pred             eEEEECCCCHHHHHHHHHHHH-CCCEEEEEECCccchhhc--CCc-eEEEecccCCHHHHHHHHcCCCEEEECCcCCCCC
Confidence            699999999999998888876 599999999987664432  122 222  3333  2334455689999999872    


Q ss_pred             --------HHHHHHhcccC--CeEEEEcCCC
Q 016265          307 --------CDRAVKAIKEG--GTVVALTGAV  327 (392)
Q Consensus       307 --------~~~~~~~l~~~--G~iv~~g~~~  327 (392)
                              ...+++.++..  +++|.++...
T Consensus        78 ~~~~n~~~~~~l~~a~~~~~~~~iv~~SS~~  108 (219)
T 3dqp_A           78 LLKVDLYGAVKLMQAAEKAEVKRFILLSTIF  108 (219)
T ss_dssp             CCCCCCHHHHHHHHHHHHTTCCEEEEECCTT
T ss_pred             cEeEeHHHHHHHHHHHHHhCCCEEEEECccc
Confidence                    23455555443  5888886543

>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str}

Probab=96.56  E-value=0.0097  Score=53.72  Aligned_cols=73  Identities=22%  Similarity=0.265  Sum_probs=46.2

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEe-CCcccHHH----HHhcCCc-EEE--eCCCCc-cccC-------CC
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAAT-SSTRNLEF----LKSLGAD-LAI--DYTKDN-FEDL-------PE  295 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~-~~~~~~~~----~~~~G~~-~vi--~~~~~~-~~~~-------~~  295 (392)
                      .|.++||+||+|++|.+.++.... .|++|+++. +++++.+.    +++.|.. ..+  |..+.. ..+.       -+
T Consensus         7 ~~k~vlVTGas~GIG~aia~~la~-~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   85 (259)
T 3edm_A            7 TNRTIVVAGAGRDIGRACAIRFAQ-EGANVVLTYNGAAEGAATAVAEIEKLGRSALAIKADLTNAAEVEAAISAAADKFG   85 (259)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHH-TTCEEEEEECSSCHHHHHHHHHHHTTTSCCEEEECCTTCHHHHHHHHHHHHHHHC
T ss_pred             CCCEEEEECCCchHHHHHHHHHHH-CCCEEEEEcCCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHhC
Confidence            578999999999999988776666 499999884 44444333    2334533 222  322211 1111       23


Q ss_pred             CccEEEecCc
Q 016265          296 KFDVVYDAIG  305 (392)
Q Consensus       296 ~~D~vid~~G  305 (392)
                      ++|++|++.|
T Consensus        86 ~id~lv~nAg   95 (259)
T 3edm_A           86 EIHGLVHVAG   95 (259)
T ss_dssp             SEEEEEECCC
T ss_pred             CCCEEEECCC
Confidence            7899999875

>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*

Probab=96.56  E-value=0.015  Score=52.56  Aligned_cols=73  Identities=16%  Similarity=0.221  Sum_probs=46.2

Q ss_pred             CCCeEEEEcCCCc--HHHHHHHHHHHhcCCeEEEEeCCcccHHHHH----hcCC--cEEE--eCCCCc-cccC-------
Q 016265          232 AGKSILVLNGSGG--VGSLVIQLAKQVFGASRVAATSSTRNLEFLK----SLGA--DLAI--DYTKDN-FEDL-------  293 (392)
Q Consensus       232 ~g~~VlI~Ga~G~--vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~----~~G~--~~vi--~~~~~~-~~~~-------  293 (392)
                      .|.++||+||+|.  +|.+.++.... .|++|+++.++++..+.++    +++.  -.++  |..+.. +.+.       
T Consensus         6 ~~k~vlVTGasg~~GIG~~ia~~l~~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~   84 (266)
T 3oig_A            6 EGRNIVVMGVANKRSIAWGIARSLHE-AGARLIFTYAGERLEKSVHELAGTLDRNDSIILPCDVTNDAEIETCFASIKEQ   84 (266)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHH-TTCEEEEEESSGGGHHHHHHHHHTSSSCCCEEEECCCSSSHHHHHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCCcHHHHHHHHHHH-CCCEEEEecCchHHHHHHHHHHHhcCCCCceEEeCCCCCHHHHHHHHHHHHHH
Confidence            4789999999955  99987776656 4999999988765544433    3333  1222  332221 1111       


Q ss_pred             CCCccEEEecCc
Q 016265          294 PEKFDVVYDAIG  305 (392)
Q Consensus       294 ~~~~D~vid~~G  305 (392)
                      .+++|++|++.|
T Consensus        85 ~g~id~li~~Ag   96 (266)
T 3oig_A           85 VGVIHGIAHCIA   96 (266)
T ss_dssp             HSCCCEEEECCC
T ss_pred             hCCeeEEEEccc
Confidence            236899999865

>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum}

Probab=96.55  E-value=0.008  Score=53.98  Aligned_cols=89  Identities=22%  Similarity=0.288  Sum_probs=57.5

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCC-cc-------ccCCCCccEEEec
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKD-NF-------EDLPEKFDVVYDA  303 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~-~~-------~~~~~~~D~vid~  303 (392)
                      -+++|||+||+|++|.+.++.+.. .|++|+++++++++.+.     ....++..+. ..       .+..+++|++|++
T Consensus        21 m~k~vlITGas~gIG~~la~~l~~-~G~~V~~~~r~~~~~~~-----~~~~~d~~d~~~v~~~~~~~~~~~g~iD~li~~   94 (251)
T 3orf_A           21 MSKNILVLGGSGALGAEVVKFFKS-KSWNTISIDFRENPNAD-----HSFTIKDSGEEEIKSVIEKINSKSIKVDTFVCA   94 (251)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHH-TTCEEEEEESSCCTTSS-----EEEECSCSSHHHHHHHHHHHHTTTCCEEEEEEC
T ss_pred             cCCEEEEECCCCHHHHHHHHHHHH-CCCEEEEEeCCcccccc-----cceEEEeCCHHHHHHHHHHHHHHcCCCCEEEEC
Confidence            368999999999999998877666 49999999987665321     1112222221 11       1113468999988


Q ss_pred             Ccc-----------------------------HHHHHHhcccCCeEEEEcCC
Q 016265          304 IGQ-----------------------------CDRAVKAIKEGGTVVALTGA  326 (392)
Q Consensus       304 ~G~-----------------------------~~~~~~~l~~~G~iv~~g~~  326 (392)
                      .|.                             .+.++..++++|+||.++..
T Consensus        95 Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~  146 (251)
T 3orf_A           95 AGGWSGGNASSDEFLKSVKGMIDMNLYSAFASAHIGAKLLNQGGLFVLTGAS  146 (251)
T ss_dssp             CCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCG
T ss_pred             CccCCCCCcccccCHHHHHHHHHHHhHHHHHHHHHHHHhhccCCEEEEEech
Confidence            761                             12345556678999988653

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=96.54  E-value=0.0023  Score=51.77  Aligned_cols=73  Identities=21%  Similarity=0.328  Sum_probs=51.8

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEE-eCCCC-ccccC-CCCccEEEecCcc
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAI-DYTKD-NFEDL-PEKFDVVYDAIGQ  306 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi-~~~~~-~~~~~-~~~~D~vid~~G~  306 (392)
                      .+++|+|+| +|.+|...++.++. .|.+++++++++++.+.+++.|...+. |..+. .+.+. .+++|+++.+++.
T Consensus         5 ~~~~v~I~G-~G~iG~~~a~~l~~-~g~~v~~~d~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~~~   80 (144)
T 2hmt_A            5 KNKQFAVIG-LGRFGGSIVKELHR-MGHEVLAVDINEEKVNAYASYATHAVIANATEENELLSLGIRNFEYVIVAIGA   80 (144)
T ss_dssp             -CCSEEEEC-CSHHHHHHHHHHHH-TTCCCEEEESCHHHHHTTTTTCSEEEECCTTCHHHHHTTTGGGCSEEEECCCS
T ss_pred             cCCcEEEEC-CCHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHhCCEEEEeCCCCHHHHHhcCCCCCCEEEECCCC
Confidence            356899999 59999999999988 499999999888877776666654332 22221 12222 3579999999984

>3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A*

Probab=96.53  E-value=0.0055  Score=60.59  Aligned_cols=89  Identities=21%  Similarity=0.197  Sum_probs=69.4

Q ss_pred             CCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCCccccCCCCccEEEecCcc---
Q 016265          230 FSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFEDLPEKFDVVYDAIGQ---  306 (392)
Q Consensus       230 ~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~~~~~~~D~vid~~G~---  306 (392)
                      .-.|.+|+|+| .|.+|..+++.++. +|++|++.+++..+...+...|...      .++.+.....|+|+.+++.   
T Consensus       274 ~L~GktVgIIG-~G~IG~~vA~~l~~-~G~~V~v~d~~~~~~~~a~~~G~~~------~~l~ell~~aDiVi~~~~t~~l  345 (494)
T 3d64_A          274 MIAGKIAVVAG-YGDVGKGCAQSLRG-LGATVWVTEIDPICALQAAMEGYRV------VTMEYAADKADIFVTATGNYHV  345 (494)
T ss_dssp             CCTTCEEEEEC-CSHHHHHHHHHHHT-TTCEEEEECSCHHHHHHHHTTTCEE------CCHHHHTTTCSEEEECSSSSCS
T ss_pred             ccCCCEEEEEc-cCHHHHHHHHHHHH-CCCEEEEEeCChHhHHHHHHcCCEe------CCHHHHHhcCCEEEECCCcccc
Confidence            35789999998 99999999999998 5999999998877654455556532      1345556689999999762   


Q ss_pred             H-HHHHHhcccCCeEEEEcCC
Q 016265          307 C-DRAVKAIKEGGTVVALTGA  326 (392)
Q Consensus       307 ~-~~~~~~l~~~G~iv~~g~~  326 (392)
                      + ...++.|+++..++.++..
T Consensus       346 I~~~~l~~MK~gAilINvgrg  366 (494)
T 3d64_A          346 INHDHMKAMRHNAIVCNIGHF  366 (494)
T ss_dssp             BCHHHHHHCCTTEEEEECSSS
T ss_pred             cCHHHHhhCCCCcEEEEcCCC
Confidence            2 6788999999999888653

>1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3

Probab=96.53  E-value=0.0071  Score=59.56  Aligned_cols=89  Identities=16%  Similarity=0.150  Sum_probs=69.4

Q ss_pred             CCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCCccccCCCCccEEEecCcc---
Q 016265          230 FSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFEDLPEKFDVVYDAIGQ---  306 (392)
Q Consensus       230 ~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~~~~~~~D~vid~~G~---  306 (392)
                      .-.|.+|+|+| .|.+|..+++.++. +|++|++.+++..+...+...|+..      .++.+.....|+|+-+++.   
T Consensus       254 ~l~GktVgIIG-~G~IG~~vA~~l~~-~G~~Viv~d~~~~~~~~a~~~g~~~------~~l~ell~~aDiVi~~~~t~~l  325 (479)
T 1v8b_A          254 LISGKIVVICG-YGDVGKGCASSMKG-LGARVYITEIDPICAIQAVMEGFNV------VTLDEIVDKGDFFITCTGNVDV  325 (479)
T ss_dssp             CCTTSEEEEEC-CSHHHHHHHHHHHH-HTCEEEEECSCHHHHHHHHTTTCEE------CCHHHHTTTCSEEEECCSSSSS
T ss_pred             ccCCCEEEEEe-eCHHHHHHHHHHHh-CcCEEEEEeCChhhHHHHHHcCCEe------cCHHHHHhcCCEEEECCChhhh
Confidence            45789999998 99999999999998 5999999998877654555666532      1345556678999998762   


Q ss_pred             H-HHHHHhcccCCeEEEEcCC
Q 016265          307 C-DRAVKAIKEGGTVVALTGA  326 (392)
Q Consensus       307 ~-~~~~~~l~~~G~iv~~g~~  326 (392)
                      + ...++.|++|..++.++..
T Consensus       326 I~~~~l~~MK~gailiNvgrg  346 (479)
T 1v8b_A          326 IKLEHLLKMKNNAVVGNIGHF  346 (479)
T ss_dssp             BCHHHHTTCCTTCEEEECSST
T ss_pred             cCHHHHhhcCCCcEEEEeCCC
Confidence            2 5788899999999988654

>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A

Probab=96.52  E-value=0.0049  Score=58.47  Aligned_cols=87  Identities=23%  Similarity=0.357  Sum_probs=68.6

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCCccccCCCCccEEEecCcc-----
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFEDLPEKFDVVYDAIGQ-----  306 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~~~~~~~D~vid~~G~-----  306 (392)
                      .|.+|.|+| .|.+|...++.++. +|.+|++.+++..+.+.+++.|+..+     .++.+..+..|+|+-++..     
T Consensus       163 ~gktvGIIG-~G~IG~~vA~~l~~-~G~~V~~~dr~~~~~~~~~~~g~~~~-----~~l~ell~~aDvV~l~~Plt~~t~  235 (351)
T 3jtm_A          163 EGKTIGTVG-AGRIGKLLLQRLKP-FGCNLLYHDRLQMAPELEKETGAKFV-----EDLNEMLPKCDVIVINMPLTEKTR  235 (351)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHGG-GCCEEEEECSSCCCHHHHHHHCCEEC-----SCHHHHGGGCSEEEECSCCCTTTT
T ss_pred             cCCEEeEEE-eCHHHHHHHHHHHH-CCCEEEEeCCCccCHHHHHhCCCeEc-----CCHHHHHhcCCEEEECCCCCHHHH
Confidence            588999998 99999999999998 69999998888777777788886432     2344555678999988651     


Q ss_pred             --H-HHHHHhcccCCeEEEEcC
Q 016265          307 --C-DRAVKAIKEGGTVVALTG  325 (392)
Q Consensus       307 --~-~~~~~~l~~~G~iv~~g~  325 (392)
                        + ...++.|+++..+|.++.
T Consensus       236 ~li~~~~l~~mk~gailIN~aR  257 (351)
T 3jtm_A          236 GMFNKELIGKLKKGVLIVNNAR  257 (351)
T ss_dssp             TCBSHHHHHHSCTTEEEEECSC
T ss_pred             HhhcHHHHhcCCCCCEEEECcC
Confidence              2 678889999998887753

>3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A*

Probab=96.51  E-value=0.01  Score=53.62  Aligned_cols=73  Identities=19%  Similarity=0.230  Sum_probs=47.9

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEE-eCCcccHHHH----HhcCCcE-EE--eCCCCc-ccc-------CCC
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAA-TSSTRNLEFL----KSLGADL-AI--DYTKDN-FED-------LPE  295 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~-~~~~~~~~~~----~~~G~~~-vi--~~~~~~-~~~-------~~~  295 (392)
                      .|+++||+||+|++|.+.++.+.. .|++|+++ .+++++.+.+    ++.|... .+  |..+.. +.+       ..+
T Consensus         3 ~~k~vlVTGas~gIG~aia~~l~~-~G~~vv~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   81 (258)
T 3oid_A            3 QNKCALVTGSSRGVGKAAAIRLAE-NGYNIVINYARSKKAALETAEEIEKLGVKVLVVKANVGQPAKIKEMFQQIDETFG   81 (258)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHH-TTCEEEEEESSCHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEecCCchHHHHHHHHHHH-CCCEEEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            578999999999999998877666 49999987 6676665443    3345432 22  322211 111       123


Q ss_pred             CccEEEecCc
Q 016265          296 KFDVVYDAIG  305 (392)
Q Consensus       296 ~~D~vid~~G  305 (392)
                      ++|++|++.|
T Consensus        82 ~id~lv~nAg   91 (258)
T 3oid_A           82 RLDVFVNNAA   91 (258)
T ss_dssp             CCCEEEECCC
T ss_pred             CCCEEEECCC
Confidence            6899999986

>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp}

Probab=96.51  E-value=0.0038  Score=57.06  Aligned_cols=92  Identities=12%  Similarity=0.088  Sum_probs=61.6

Q ss_pred             eEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEE-EeCCC-CccccCCCCccEEEecCcc------
Q 016265          235 SILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLA-IDYTK-DNFEDLPEKFDVVYDAIGQ------  306 (392)
Q Consensus       235 ~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~v-i~~~~-~~~~~~~~~~D~vid~~G~------  306 (392)
                      +|||+||+|.+|...++.+....|.+|+++++++++...+...+...+ .|..+ +.+.+..+++|+||.+.|.      
T Consensus         2 ~ilVtGatG~iG~~l~~~L~~~~g~~V~~~~R~~~~~~~~~~~~v~~~~~D~~d~~~l~~~~~~~d~vi~~a~~~~~~~~   81 (289)
T 3e48_A            2 NIMLTGATGHLGTHITNQAIANHIDHFHIGVRNVEKVPDDWRGKVSVRQLDYFNQESMVEAFKGMDTVVFIPSIIHPSFK   81 (289)
T ss_dssp             CEEEETTTSHHHHHHHHHHHHTTCTTEEEEESSGGGSCGGGBTTBEEEECCTTCHHHHHHHTTTCSEEEECCCCCCSHHH
T ss_pred             EEEEEcCCchHHHHHHHHHhhCCCCcEEEEECCHHHHHHhhhCCCEEEEcCCCCHHHHHHHHhCCCEEEEeCCCCccchh
Confidence            599999999999998888765228899999998877554444444322 23333 2234445689999999872      


Q ss_pred             ----HHHHHHhcccC--CeEEEEcCC
Q 016265          307 ----CDRAVKAIKEG--GTVVALTGA  326 (392)
Q Consensus       307 ----~~~~~~~l~~~--G~iv~~g~~  326 (392)
                          ...+++.++..  ++||.++..
T Consensus        82 ~~~~~~~l~~aa~~~gv~~iv~~Ss~  107 (289)
T 3e48_A           82 RIPEVENLVYAAKQSGVAHIIFIGYY  107 (289)
T ss_dssp             HHHHHHHHHHHHHHTTCCEEEEEEES
T ss_pred             hHHHHHHHHHHHHHcCCCEEEEEccc
Confidence                13455555544  478887654

>2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus thermophilus HB8, structural genomics, NPPSFA; HET: NAD; 1.65A {Thermus thermophilus} SCOP: c.2.1.2

Probab=96.49  E-value=0.0078  Score=54.20  Aligned_cols=72  Identities=22%  Similarity=0.327  Sum_probs=48.6

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEE--eCCCCc-cccC-------CCCccEEE
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAI--DYTKDN-FEDL-------PEKFDVVY  301 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi--~~~~~~-~~~~-------~~~~D~vi  301 (392)
                      .|.++||+||+|++|...++.+.. .|++|+++++++++.+..++++. ..+  |..+.. +.+.       .+++|++|
T Consensus         5 ~~k~vlVTGas~gIG~~ia~~l~~-~G~~V~~~~r~~~~~~~~~~~~~-~~~~~D~~~~~~~~~~~~~~~~~~g~iD~lv   82 (256)
T 2d1y_A            5 AGKGVLVTGGARGIGRAIAQAFAR-EGALVALCDLRPEGKEVAEAIGG-AFFQVDLEDERERVRFVEEAAYALGRVDVLV   82 (256)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHH-TTCEEEEEESSTTHHHHHHHHTC-EEEECCTTCHHHHHHHHHHHHHHHSCCCEEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHH-CCCEEEEEeCChhHHHHHHHhhC-CEEEeeCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence            478999999999999998877666 49999999887766434444432 333  322211 1111       23689999


Q ss_pred             ecCc
Q 016265          302 DAIG  305 (392)
Q Consensus       302 d~~G  305 (392)
                      ++.|
T Consensus        83 ~~Ag   86 (256)
T 2d1y_A           83 NNAA   86 (256)
T ss_dssp             ECCC
T ss_pred             ECCC
Confidence            9876

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=96.48  E-value=0.013  Score=47.41  Aligned_cols=72  Identities=22%  Similarity=0.282  Sum_probs=54.7

Q ss_pred             CCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEE-eCCCCc-cccC-CCCccEEEecCcc
Q 016265          233 GKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAI-DYTKDN-FEDL-PEKFDVVYDAIGQ  306 (392)
Q Consensus       233 g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi-~~~~~~-~~~~-~~~~D~vid~~G~  306 (392)
                      ..+|+|+| +|.+|...++.+.. .|.++++++.++++.+.+++.|...+. |..+.. +.+. .+++|++|.+++.
T Consensus         6 ~~~v~I~G-~G~iG~~la~~L~~-~g~~V~~id~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~~d~vi~~~~~   80 (141)
T 3llv_A            6 RYEYIVIG-SEAAGVGLVRELTA-AGKKVLAVDKSKEKIELLEDEGFDAVIADPTDESFYRSLDLEGVSAVLITGSD   80 (141)
T ss_dssp             CCSEEEEC-CSHHHHHHHHHHHH-TTCCEEEEESCHHHHHHHHHTTCEEEECCTTCHHHHHHSCCTTCSEEEECCSC
T ss_pred             CCEEEEEC-CCHHHHHHHHHHHH-CCCeEEEEECCHHHHHHHHHCCCcEEECCCCCHHHHHhCCcccCCEEEEecCC
Confidence            46899998 79999999998887 499999999999999988888765433 333222 2222 3579999999984

>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A*

Probab=96.48  E-value=0.013  Score=53.16  Aligned_cols=73  Identities=22%  Similarity=0.328  Sum_probs=47.4

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeC-CcccHHHH----HhcCCcE-EE--eCCCCc-cccC-------CC
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATS-STRNLEFL----KSLGADL-AI--DYTKDN-FEDL-------PE  295 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~-~~~~~~~~----~~~G~~~-vi--~~~~~~-~~~~-------~~  295 (392)
                      .|+++||+||+|++|.+.++.... .|++|+++++ +.++.+.+    ++.|... .+  |..+.. +.+.       -+
T Consensus        27 ~~k~vlVTGas~gIG~aia~~la~-~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~v~~~~~~~~~~~g  105 (269)
T 4dmm_A           27 TDRIALVTGASRGIGRAIALELAA-AGAKVAVNYASSAGAADEVVAAIAAAGGEAFAVKADVSQESEVEALFAAVIERWG  105 (269)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHH-TTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHH-CCCEEEEEeCCChHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            578999999999999987776656 4999998887 55444433    3345332 22  322211 1111       23


Q ss_pred             CccEEEecCc
Q 016265          296 KFDVVYDAIG  305 (392)
Q Consensus       296 ~~D~vid~~G  305 (392)
                      ++|++|++.|
T Consensus       106 ~id~lv~nAg  115 (269)
T 4dmm_A          106 RLDVLVNNAG  115 (269)
T ss_dssp             CCCEEEECCC
T ss_pred             CCCEEEECCC
Confidence            7899999876

>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0

Probab=96.47  E-value=0.013  Score=53.44  Aligned_cols=35  Identities=17%  Similarity=0.178  Sum_probs=29.9

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeC
Q 016265          231 SAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATS  266 (392)
Q Consensus       231 ~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~  266 (392)
                      -.|+++||+||+|++|.+.++.... .|++|+++++
T Consensus        13 l~gk~~lVTGas~gIG~a~a~~la~-~G~~V~~~~r   47 (280)
T 3pgx_A           13 LQGRVAFITGAARGQGRSHAVRLAA-EGADIIACDI   47 (280)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHH-TTCEEEEEEC
T ss_pred             cCCCEEEEECCCcHHHHHHHHHHHH-CCCEEEEEec
Confidence            4678999999999999998776666 4999999886

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=96.46  E-value=0.014  Score=54.24  Aligned_cols=96  Identities=16%  Similarity=0.190  Sum_probs=66.5

Q ss_pred             HhcC-CCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHh----cCCc---EEEeCCCCccccCCCCc
Q 016265          226 ERTG-FSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKS----LGAD---LAIDYTKDNFEDLPEKF  297 (392)
Q Consensus       226 ~~~~-~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~----~G~~---~vi~~~~~~~~~~~~~~  297 (392)
                      +... ++++++||-+| +| .|..+..+++. +|++++.++.+++.++.+++    .|..   .++..+-.......+.|
T Consensus       110 ~~l~~~~~~~~vLDiG-cG-~G~~~~~la~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~f  186 (312)
T 3vc1_A          110 DHLGQAGPDDTLVDAG-CG-RGGSMVMAHRR-FGSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDTPFDKGAV  186 (312)
T ss_dssp             TTSCCCCTTCEEEEES-CT-TSHHHHHHHHH-HCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTTCE
T ss_pred             HHhccCCCCCEEEEec-CC-CCHHHHHHHHH-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhcCCCCCCCE
Confidence            3444 78999999997 54 48899999987 48999999999988877754    4432   22222212221123579


Q ss_pred             cEEEecCc--------cHHHHHHhcccCCeEEEEc
Q 016265          298 DVVYDAIG--------QCDRAVKAIKEGGTVVALT  324 (392)
Q Consensus       298 D~vid~~G--------~~~~~~~~l~~~G~iv~~g  324 (392)
                      |+|+..-.        .+..+.++|+|||+++...
T Consensus       187 D~V~~~~~l~~~~~~~~l~~~~~~LkpgG~l~~~~  221 (312)
T 3vc1_A          187 TASWNNESTMYVDLHDLFSEHSRFLKVGGRYVTIT  221 (312)
T ss_dssp             EEEEEESCGGGSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             eEEEECCchhhCCHHHHHHHHHHHcCCCcEEEEEE
Confidence            99986422        2578889999999998764

>2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6; protein-CO-factor complex, structural genomics, structural G consortium, SGC, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: c.2.1.2

Probab=96.45  E-value=0.0048  Score=55.18  Aligned_cols=73  Identities=23%  Similarity=0.350  Sum_probs=49.1

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEE--eCCCCc-ccc---CCCCccEEEecCc
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAI--DYTKDN-FED---LPEKFDVVYDAIG  305 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi--~~~~~~-~~~---~~~~~D~vid~~G  305 (392)
                      .|.++||+||+|++|...++.+.. .|++|+++++++++++.+.++.....+  |..+.. +.+   ..+++|++|++.|
T Consensus         5 ~~k~vlVTGas~gIG~~ia~~l~~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~id~lv~~Ag   83 (246)
T 2ag5_A            5 DGKVIILTAAAQGIGQAAALAFAR-EGAKVIATDINESKLQELEKYPGIQTRVLDVTKKKQIDQFANEVERLDVLFNVAG   83 (246)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHH-TTCEEEEEESCHHHHGGGGGSTTEEEEECCTTCHHHHHHHHHHCSCCSEEEECCC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHH-CCCEEEEEECCHHHHHHHHhccCceEEEeeCCCHHHHHHHHHHhCCCCEEEECCc
Confidence            478999999999999998877766 499999999887766544333211222  332221 111   1347899999876

>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp}

Probab=96.44  E-value=0.014  Score=53.10  Aligned_cols=35  Identities=20%  Similarity=0.208  Sum_probs=29.9

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCC
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSS  267 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~  267 (392)
                      .|+++||+||+|++|.+.++.+.. .|++|++++++
T Consensus        12 ~gk~vlVTGas~gIG~~ia~~l~~-~G~~V~~~~r~   46 (278)
T 3sx2_A           12 TGKVAFITGAARGQGRAHAVRLAA-DGADIIAVDLC   46 (278)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHH-TTCEEEEEECC
T ss_pred             CCCEEEEECCCChHHHHHHHHHHH-CCCeEEEEecc
Confidence            578999999999999987776666 49999998876

>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens}

Probab=96.44  E-value=0.0051  Score=57.99  Aligned_cols=85  Identities=21%  Similarity=0.244  Sum_probs=66.3

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCCccccCCCCccEEEecCcc-----
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFEDLPEKFDVVYDAIGQ-----  306 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~~~~~~~D~vid~~G~-----  306 (392)
                      .|.+|.|+| .|.+|...++.++. +|.+|++.+++..+ +.+.++|++.      .++.+..+..|+|+.++..     
T Consensus       164 ~g~tvgIIG-lG~IG~~vA~~l~~-~G~~V~~~d~~~~~-~~~~~~g~~~------~~l~ell~~aDvV~l~~P~t~~t~  234 (335)
T 2g76_A          164 NGKTLGILG-LGRIGREVATRMQS-FGMKTIGYDPIISP-EVSASFGVQQ------LPLEEIWPLCDFITVHTPLLPSTT  234 (335)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHT-TTCEEEEECSSSCH-HHHHHTTCEE------CCHHHHGGGCSEEEECCCCCTTTT
T ss_pred             CcCEEEEEe-ECHHHHHHHHHHHH-CCCEEEEECCCcch-hhhhhcCcee------CCHHHHHhcCCEEEEecCCCHHHH
Confidence            578999998 99999999999998 69999998887655 4567788642      1344455678999998751     


Q ss_pred             --H-HHHHHhcccCCeEEEEcC
Q 016265          307 --C-DRAVKAIKEGGTVVALTG  325 (392)
Q Consensus       307 --~-~~~~~~l~~~G~iv~~g~  325 (392)
                        + ...++.+++++.++.++.
T Consensus       235 ~li~~~~l~~mk~gailIN~ar  256 (335)
T 2g76_A          235 GLLNDNTFAQCKKGVRVVNCAR  256 (335)
T ss_dssp             TSBCHHHHTTSCTTEEEEECSC
T ss_pred             HhhCHHHHhhCCCCcEEEECCC
Confidence              2 578889999999888865

>3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV}

Probab=96.44  E-value=0.017  Score=52.61  Aligned_cols=38  Identities=26%  Similarity=0.373  Sum_probs=31.5

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCccc
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRN  270 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~  270 (392)
                      .|+++||+||++++|.+.++.... .|++|++++++.++
T Consensus         5 ~~k~~lVTGas~GIG~aia~~la~-~G~~V~~~~r~~~~   42 (274)
T 3e03_A            5 SGKTLFITGASRGIGLAIALRAAR-DGANVAIAAKSAVA   42 (274)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHH-TTCEEEEEESCCSC
T ss_pred             CCcEEEEECCCChHHHHHHHHHHH-CCCEEEEEeccchh
Confidence            478999999999999987776656 49999999887653

>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2

Probab=96.44  E-value=0.008  Score=54.37  Aligned_cols=73  Identities=33%  Similarity=0.345  Sum_probs=48.1

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeC-CcccHHHH----HhcCCcE-EE--eCCCCc-cccC-------CC
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATS-STRNLEFL----KSLGADL-AI--DYTKDN-FEDL-------PE  295 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~-~~~~~~~~----~~~G~~~-vi--~~~~~~-~~~~-------~~  295 (392)
                      .+.+|||+||+|++|...+..+.. .|++|+++++ +.++.+.+    ++.|... .+  |..+.. +.+.       -.
T Consensus        20 ~~k~vlItGasggiG~~la~~l~~-~G~~v~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   98 (274)
T 1ja9_A           20 AGKVALTTGAGRGIGRGIAIELGR-RGASVVVNYGSSSKAAEEVVAELKKLGAQGVAIQADISKPSEVVALFDKAVSHFG   98 (274)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHH-TTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHH-CCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHcC
Confidence            478999999999999988877766 4999999888 66554432    3345432 22  332221 1111       13


Q ss_pred             CccEEEecCc
Q 016265          296 KFDVVYDAIG  305 (392)
Q Consensus       296 ~~D~vid~~G  305 (392)
                      ++|++|++.|
T Consensus        99 ~~d~vi~~Ag  108 (274)
T 1ja9_A           99 GLDFVMSNSG  108 (274)
T ss_dssp             CEEEEECCCC
T ss_pred             CCCEEEECCC
Confidence            7899999876

>1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2

Probab=96.42  E-value=0.0096  Score=53.23  Aligned_cols=72  Identities=24%  Similarity=0.304  Sum_probs=50.1

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHH-hcCCcEEE--eCCCCc-cccC-------CCCccEE
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLK-SLGADLAI--DYTKDN-FEDL-------PEKFDVV  300 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~-~~G~~~vi--~~~~~~-~~~~-------~~~~D~v  300 (392)
                      .|.+++|+||+|++|.+.++.+.. .|++|+++++++++++.+. ++|. ..+  |..+.. +.+.       -+++|++
T Consensus         4 ~~k~vlVTGas~giG~~ia~~l~~-~G~~V~~~~r~~~~~~~~~~~~~~-~~~~~D~~~~~~~~~~~~~~~~~~g~id~l   81 (245)
T 1uls_A            4 KDKAVLITGAAHGIGRATLELFAK-EGARLVACDIEEGPLREAAEAVGA-HPVVMDVADPASVERGFAEALAHLGRLDGV   81 (245)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHTTTC-EEEECCTTCHHHHHHHHHHHHHHHSSCCEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHHcCC-EEEEecCCCHHHHHHHHHHHHHHcCCCCEE
Confidence            468999999999999998877766 4999999999887766553 4553 223  333221 1111       2368999


Q ss_pred             EecCc
Q 016265          301 YDAIG  305 (392)
Q Consensus       301 id~~G  305 (392)
                      |++.|
T Consensus        82 vn~Ag   86 (245)
T 1uls_A           82 VHYAG   86 (245)
T ss_dssp             EECCC
T ss_pred             EECCC
Confidence            99977

>1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A*

Probab=96.42  E-value=0.016  Score=54.82  Aligned_cols=49  Identities=29%  Similarity=0.394  Sum_probs=41.1

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcE
Q 016265          231 SAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADL  281 (392)
Q Consensus       231 ~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~  281 (392)
                      -.|++|+|.| .|.||+.+++.++. +|++|++.+.+..+.++++++|++.
T Consensus       173 L~GktV~I~G-~GnVG~~~A~~l~~-~GakVvvsD~~~~~~~~a~~~ga~~  221 (355)
T 1c1d_A          173 LDGLTVLVQG-LGAVGGSLASLAAE-AGAQLLVADTDTERVAHAVALGHTA  221 (355)
T ss_dssp             STTCEEEEEC-CSHHHHHHHHHHHH-TTCEEEEECSCHHHHHHHHHTTCEE
T ss_pred             CCCCEEEEEC-cCHHHHHHHHHHHH-CCCEEEEEeCCccHHHHHHhcCCEE
Confidence            5799999998 99999999999998 5999997777766666677787654

>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0

Probab=96.41  E-value=0.0085  Score=53.53  Aligned_cols=75  Identities=21%  Similarity=0.382  Sum_probs=51.5

Q ss_pred             CCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHH-hcCCcEEE---eCCCCc-cc---cCCCCccEEE
Q 016265          230 FSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLK-SLGADLAI---DYTKDN-FE---DLPEKFDVVY  301 (392)
Q Consensus       230 ~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~-~~G~~~vi---~~~~~~-~~---~~~~~~D~vi  301 (392)
                      ..++++|||+||+|++|...+..+.. .|++|++++++.++++.+. ++.....+   |..+.. +.   +...++|++|
T Consensus        11 ~~~~k~vlVTGas~gIG~~~a~~l~~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~id~li   89 (249)
T 3f9i_A           11 DLTGKTSLITGASSGIGSAIARLLHK-LGSKVIISGSNEEKLKSLGNALKDNYTIEVCNLANKEECSNLISKTSNLDILV   89 (249)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHCSSEEEEECCTTSHHHHHHHHHTCSCCSEEE
T ss_pred             cCCCCEEEEECCCChHHHHHHHHHHH-CCCEEEEEcCCHHHHHHHHHHhccCccEEEcCCCCHHHHHHHHHhcCCCCEEE
Confidence            45789999999999999987776666 4999999999888776653 44433222   222211 11   1124799999


Q ss_pred             ecCc
Q 016265          302 DAIG  305 (392)
Q Consensus       302 d~~G  305 (392)
                      ++.|
T Consensus        90 ~~Ag   93 (249)
T 3f9i_A           90 CNAG   93 (249)
T ss_dssp             ECCC
T ss_pred             ECCC
Confidence            9877

>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A*

Probab=96.38  E-value=0.009  Score=53.52  Aligned_cols=73  Identities=19%  Similarity=0.311  Sum_probs=50.8

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHH-HhcCCcEEE---eCCCC-ccccC-------CCCccE
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFL-KSLGADLAI---DYTKD-NFEDL-------PEKFDV  299 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~-~~~G~~~vi---~~~~~-~~~~~-------~~~~D~  299 (392)
                      .|+++||+||+|++|.+.++.+.. .|++|+++++++++.+.+ +++|....+   |..+. .+.+.       -+++|+
T Consensus         5 ~gk~vlVTGas~gIG~a~a~~l~~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~   83 (247)
T 3rwb_A            5 AGKTALVTGAAQGIGKAIAARLAA-DGATVIVSDINAEGAKAAAASIGKKARAIAADISDPGSVKALFAEIQALTGGIDI   83 (247)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHH-TTCEEEEECSCHHHHHHHHHHHCTTEEECCCCTTCHHHHHHHHHHHHHHHSCCSE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHHhCCceEEEEcCCCCHHHHHHHHHHHHHHCCCCCE
Confidence            578999999999999998887766 499999999888776654 455544322   22221 11111       237999


Q ss_pred             EEecCc
Q 016265          300 VYDAIG  305 (392)
Q Consensus       300 vid~~G  305 (392)
                      +|++.|
T Consensus        84 lv~nAg   89 (247)
T 3rwb_A           84 LVNNAS   89 (247)
T ss_dssp             EEECCC
T ss_pred             EEECCC
Confidence            999887

>3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0

Probab=96.36  E-value=0.017  Score=52.64  Aligned_cols=34  Identities=18%  Similarity=0.216  Sum_probs=29.4

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeC
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATS  266 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~  266 (392)
                      .|+++||+||++++|.+.++.... .|++|+++++
T Consensus        10 ~~k~~lVTGas~GIG~a~a~~la~-~G~~V~~~~r   43 (277)
T 3tsc_A           10 EGRVAFITGAARGQGRAHAVRMAA-EGADIIAVDI   43 (277)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHH-TTCEEEEEEC
T ss_pred             CCCEEEEECCccHHHHHHHHHHHH-cCCEEEEEec
Confidence            578999999999999998777666 4999999876

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=96.36  E-value=0.014  Score=52.02  Aligned_cols=97  Identities=20%  Similarity=0.228  Sum_probs=66.2

Q ss_pred             HHHhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcC--CeEEEEeCCcccHHHHHhc----CCcEEEeCCCCcc---ccCC
Q 016265          224 GLERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFG--ASRVAATSSTRNLEFLKSL----GADLAIDYTKDNF---EDLP  294 (392)
Q Consensus       224 al~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G--~~vv~~~~~~~~~~~~~~~----G~~~vi~~~~~~~---~~~~  294 (392)
                      +++...++||++||=+| + +.|..+..+|+.+ |  .+|+.++.+++.++.+++.    +--..+..+....   ....
T Consensus        69 gl~~l~ikpG~~VldlG-~-G~G~~~~~la~~V-G~~G~V~avD~s~~~~~~l~~~a~~~~ni~~V~~d~~~p~~~~~~~  145 (233)
T 4df3_A           69 GLIELPVKEGDRILYLG-I-ASGTTASHMSDII-GPRGRIYGVEFAPRVMRDLLTVVRDRRNIFPILGDARFPEKYRHLV  145 (233)
T ss_dssp             TCSCCCCCTTCEEEEET-C-TTSHHHHHHHHHH-CTTCEEEEEECCHHHHHHHHHHSTTCTTEEEEESCTTCGGGGTTTC
T ss_pred             chhhcCCCCCCEEEEec-C-cCCHHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhhHhhcCeeEEEEeccCcccccccc
Confidence            45677899999999998 4 4488899999986 5  4789999998887777543    2111222222221   2234


Q ss_pred             CCccEEEecCcc-------HHHHHHhcccCCeEEEE
Q 016265          295 EKFDVVYDAIGQ-------CDRAVKAIKEGGTVVAL  323 (392)
Q Consensus       295 ~~~D~vid~~G~-------~~~~~~~l~~~G~iv~~  323 (392)
                      +.+|+||.....       +..+.+.|+|||+++..
T Consensus       146 ~~vDvVf~d~~~~~~~~~~l~~~~r~LKpGG~lvI~  181 (233)
T 4df3_A          146 EGVDGLYADVAQPEQAAIVVRNARFFLRDGGYMLMA  181 (233)
T ss_dssp             CCEEEEEECCCCTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ceEEEEEEeccCChhHHHHHHHHHHhccCCCEEEEE
Confidence            578998865431       46677889999998764

>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A

Probab=96.35  E-value=0.0044  Score=54.96  Aligned_cols=72  Identities=18%  Similarity=0.318  Sum_probs=48.2

Q ss_pred             CCeEEEEcCCCcHHHHHHHHHHHhcCC--eEEEEeCCcccHHHHHhcCCcEE-EeCCC-CccccCCCCccEEEecCc
Q 016265          233 GKSILVLNGSGGVGSLVIQLAKQVFGA--SRVAATSSTRNLEFLKSLGADLA-IDYTK-DNFEDLPEKFDVVYDAIG  305 (392)
Q Consensus       233 g~~VlI~Ga~G~vG~~aiqlak~~~G~--~vv~~~~~~~~~~~~~~~G~~~v-i~~~~-~~~~~~~~~~D~vid~~G  305 (392)
                      +.+|||+||+|++|...++.+.. .|.  +|+++++++++.+....-+...+ .|..+ +.+.+..+++|+||++.|
T Consensus        18 ~~~vlVtGasg~iG~~l~~~L~~-~G~~~~V~~~~r~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vi~~ag   93 (242)
T 2bka_A           18 NKSVFILGASGETGRVLLKEILE-QGLFSKVTLIGRRKLTFDEEAYKNVNQEVVDFEKLDDYASAFQGHDVGFCCLG   93 (242)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHH-HTCCSEEEEEESSCCCCCSGGGGGCEEEECCGGGGGGGGGGGSSCSEEEECCC
T ss_pred             CCeEEEECCCcHHHHHHHHHHHc-CCCCCEEEEEEcCCCCccccccCCceEEecCcCCHHHHHHHhcCCCEEEECCC
Confidence            67899999999999998877766 498  99999987665432221122211 22222 233444458999999987

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=96.35  E-value=0.021  Score=51.53  Aligned_cols=97  Identities=15%  Similarity=0.182  Sum_probs=66.3

Q ss_pred             HHhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHh----cCCc---EEEeCCCCccccCCCCc
Q 016265          225 LERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKS----LGAD---LAIDYTKDNFEDLPEKF  297 (392)
Q Consensus       225 l~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~----~G~~---~vi~~~~~~~~~~~~~~  297 (392)
                      ++...++++++||-+| +|. |..+..+++. .+.+++.++.++..++.+++    .|..   .++..+-.......+.|
T Consensus        54 ~~~~~~~~~~~vLDiG-cG~-G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~f  130 (273)
T 3bus_A           54 IALLDVRSGDRVLDVG-CGI-GKPAVRLATA-RDVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLPFEDASF  130 (273)
T ss_dssp             HHHSCCCTTCEEEEES-CTT-SHHHHHHHHH-SCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCTTCE
T ss_pred             HHhcCCCCCCEEEEeC-CCC-CHHHHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccCCCCCCCc
Confidence            4567788999999998 554 8888899987 58999999999887777654    2422   22222211111113579


Q ss_pred             cEEEecCc---------cHHHHHHhcccCCeEEEEc
Q 016265          298 DVVYDAIG---------QCDRAVKAIKEGGTVVALT  324 (392)
Q Consensus       298 D~vid~~G---------~~~~~~~~l~~~G~iv~~g  324 (392)
                      |+|+..-.         .+..+.++|+|||+++...
T Consensus       131 D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~  166 (273)
T 3bus_A          131 DAVWALESLHHMPDRGRALREMARVLRPGGTVAIAD  166 (273)
T ss_dssp             EEEEEESCTTTSSCHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             cEEEEechhhhCCCHHHHHHHHHHHcCCCeEEEEEE
Confidence            99985421         1477888999999988653

>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}

Probab=96.33  E-value=0.011  Score=53.99  Aligned_cols=73  Identities=25%  Similarity=0.381  Sum_probs=49.4

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHH----HhcCCc-EEE--eCCCCc-cccC-------CCC
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFL----KSLGAD-LAI--DYTKDN-FEDL-------PEK  296 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~----~~~G~~-~vi--~~~~~~-~~~~-------~~~  296 (392)
                      .|+++||+||+|++|.+.++.+.. .|++|+++++++++++.+    ++.|.. ..+  |..+.. +.+.       -++
T Consensus        31 ~gk~~lVTGas~GIG~aia~~la~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~g~  109 (276)
T 3r1i_A           31 SGKRALITGASTGIGKKVALAYAE-AGAQVAVAARHSDALQVVADEIAGVGGKALPIRCDVTQPDQVRGMLDQMTGELGG  109 (276)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHH-TTCEEEEEESSGGGGHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            578999999999999998777666 499999999987775544    233432 223  332221 1111       237


Q ss_pred             ccEEEecCc
Q 016265          297 FDVVYDAIG  305 (392)
Q Consensus       297 ~D~vid~~G  305 (392)
                      +|++|++.|
T Consensus       110 iD~lvnnAg  118 (276)
T 3r1i_A          110 IDIAVCNAG  118 (276)
T ss_dssp             CSEEEECCC
T ss_pred             CCEEEECCC
Confidence            999999877

>1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MES; 1.65A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=96.32  E-value=0.0051  Score=54.61  Aligned_cols=37  Identities=22%  Similarity=0.443  Sum_probs=31.5

Q ss_pred             CCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCccc
Q 016265          233 GKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRN  270 (392)
Q Consensus       233 g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~  270 (392)
                      |.++||+||+|++|...++.+.. .|++|+++++++++
T Consensus         3 ~k~vlITGas~gIG~~~a~~l~~-~G~~V~~~~r~~~~   39 (236)
T 1ooe_A            3 SGKVIVYGGKGALGSAILEFFKK-NGYTVLNIDLSAND   39 (236)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHH-TTEEEEEEESSCCT
T ss_pred             CCEEEEECCCcHHHHHHHHHHHH-CCCEEEEEecCccc
Confidence            67899999999999998887766 49999999887655

>3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str}

Probab=96.31  E-value=0.008  Score=54.19  Aligned_cols=73  Identities=18%  Similarity=0.321  Sum_probs=49.7

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHH-h---cCCcE-EE--eCCCCc-cccC-------CCC
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLK-S---LGADL-AI--DYTKDN-FEDL-------PEK  296 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~-~---~G~~~-vi--~~~~~~-~~~~-------~~~  296 (392)
                      .|+++||+||+|++|.+.++.+.. .|++|+++++++++++.+. +   .|... .+  |..+.. +.+.       -++
T Consensus         5 ~~k~vlVTGas~gIG~aia~~l~~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   83 (257)
T 3imf_A            5 KEKVVIITGGSSGMGKGMATRFAK-EGARVVITGRTKEKLEEAKLEIEQFPGQILTVQMDVRNTDDIQKMIEQIDEKFGR   83 (257)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHCCSTTCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            478999999999999998877666 4999999999888766553 2   23222 22  322211 1111       237


Q ss_pred             ccEEEecCc
Q 016265          297 FDVVYDAIG  305 (392)
Q Consensus       297 ~D~vid~~G  305 (392)
                      +|++|++.|
T Consensus        84 id~lv~nAg   92 (257)
T 3imf_A           84 IDILINNAA   92 (257)
T ss_dssp             CCEEEECCC
T ss_pred             CCEEEECCC
Confidence            899999887

>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A

Probab=96.30  E-value=0.0047  Score=58.99  Aligned_cols=87  Identities=20%  Similarity=0.254  Sum_probs=65.8

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCe-EEEEeCCcccHHHHHhcCCcEEEeCCCCccccCCCCccEEEecCcc----
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGAS-RVAATSSTRNLEFLKSLGADLAIDYTKDNFEDLPEKFDVVYDAIGQ----  306 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~-vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~~~~~~~D~vid~~G~----  306 (392)
                      .|.+|.|+| .|.+|...++.++. +|++ |++.+++..+.+.+.++|+..+     .++.+.....|+|+.++..    
T Consensus       163 ~g~tvgIIG-~G~IG~~vA~~l~~-~G~~~V~~~d~~~~~~~~~~~~g~~~~-----~~l~ell~~aDvV~l~~P~t~~t  235 (364)
T 2j6i_A          163 EGKTIATIG-AGRIGYRVLERLVP-FNPKELLYYDYQALPKDAEEKVGARRV-----ENIEELVAQADIVTVNAPLHAGT  235 (364)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHGG-GCCSEEEEECSSCCCHHHHHHTTEEEC-----SSHHHHHHTCSEEEECCCCSTTT
T ss_pred             CCCEEEEEC-cCHHHHHHHHHHHh-CCCcEEEEECCCccchhHHHhcCcEec-----CCHHHHHhcCCEEEECCCCChHH
Confidence            678999998 99999999999998 6997 9888888777777777775421     1234444567999988652    


Q ss_pred             ---H-HHHHHhcccCCeEEEEcC
Q 016265          307 ---C-DRAVKAIKEGGTVVALTG  325 (392)
Q Consensus       307 ---~-~~~~~~l~~~G~iv~~g~  325 (392)
                         + ...+..|++++.++.++.
T Consensus       236 ~~li~~~~l~~mk~ga~lIn~ar  258 (364)
T 2j6i_A          236 KGLINKELLSKFKKGAWLVNTAR  258 (364)
T ss_dssp             TTCBCHHHHTTSCTTEEEEECSC
T ss_pred             HHHhCHHHHhhCCCCCEEEECCC
Confidence               2 567788888888887753

>3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus}

Probab=96.30  E-value=0.008  Score=55.48  Aligned_cols=73  Identities=29%  Similarity=0.460  Sum_probs=48.8

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHH-h---cCC-c-EEE--eCCCCc-ccc-------CCC
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLK-S---LGA-D-LAI--DYTKDN-FED-------LPE  295 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~-~---~G~-~-~vi--~~~~~~-~~~-------~~~  295 (392)
                      .|+++||+||+|++|.+.++.+.. .|++|++++++.++++.+. +   .|. . ..+  |..+.. +.+       .-+
T Consensus        40 ~~k~vlVTGas~GIG~aia~~la~-~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g  118 (293)
T 3rih_A           40 SARSVLVTGGTKGIGRGIATVFAR-AGANVAVAARSPRELSSVTAELGELGAGNVIGVRLDVSDPGSCADAARTVVDAFG  118 (293)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHH-TTCEEEEEESSGGGGHHHHHHHTTSSSSCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHH-CCCEEEEEECCHHHHHHHHHHHHhhCCCcEEEEEEeCCCHHHHHHHHHHHHHHcC
Confidence            578999999999999998776666 4999999999887765442 3   231 1 222  322211 111       124


Q ss_pred             CccEEEecCc
Q 016265          296 KFDVVYDAIG  305 (392)
Q Consensus       296 ~~D~vid~~G  305 (392)
                      ++|++|++.|
T Consensus       119 ~iD~lvnnAg  128 (293)
T 3rih_A          119 ALDVVCANAG  128 (293)
T ss_dssp             CCCEEEECCC
T ss_pred             CCCEEEECCC
Confidence            7899999877

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=96.30  E-value=0.017  Score=52.64  Aligned_cols=89  Identities=18%  Similarity=0.226  Sum_probs=56.4

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHH-HhcCCcEEEeCCCCccccCC-CCccEEEecCccHH-
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFL-KSLGADLAIDYTKDNFEDLP-EKFDVVYDAIGQCD-  308 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~-~~~G~~~vi~~~~~~~~~~~-~~~D~vid~~G~~~-  308 (392)
                      .|.+++|+| +|++|.++++.+... |++++++.++.++.+.+ ++++....++..+  +.+.. +++|++|+|+|... 
T Consensus       118 ~~k~vlViG-aGg~g~a~a~~L~~~-G~~V~v~~R~~~~~~~la~~~~~~~~~~~~~--~~~~~~~~~DivVn~t~~~~~  193 (271)
T 1nyt_A          118 PGLRILLIG-AGGASRGVLLPLLSL-DCAVTITNRTVSRAEELAKLFAHTGSIQALS--MDELEGHEFDLIINATSSGIS  193 (271)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHHT-TCEEEEECSSHHHHHHHHHHTGGGSSEEECC--SGGGTTCCCSEEEECCSCGGG
T ss_pred             CCCEEEEEC-CcHHHHHHHHHHHHc-CCEEEEEECCHHHHHHHHHHhhccCCeeEec--HHHhccCCCCEEEECCCCCCC
Confidence            578999999 689999998888774 89888888888876544 4555310011111  12222 58999999998321 


Q ss_pred             -----HHHHhcccCCeEEEEc
Q 016265          309 -----RAVKAIKEGGTVVALT  324 (392)
Q Consensus       309 -----~~~~~l~~~G~iv~~g  324 (392)
                           .-...++++..++.+.
T Consensus       194 ~~~~~i~~~~l~~~~~v~D~~  214 (271)
T 1nyt_A          194 GDIPAIPSSLIHPGIYCYDMF  214 (271)
T ss_dssp             TCCCCCCGGGCCTTCEEEESC
T ss_pred             CCCCCCCHHHcCCCCEEEEec
Confidence                 1122355555555554

>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2

Probab=96.29  E-value=0.016  Score=51.31  Aligned_cols=72  Identities=22%  Similarity=0.249  Sum_probs=49.3

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHh-c-CCcEEE--eCCCCc-ccc---CCCCccEEEec
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKS-L-GADLAI--DYTKDN-FED---LPEKFDVVYDA  303 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~-~-G~~~vi--~~~~~~-~~~---~~~~~D~vid~  303 (392)
                      .|.+|||+||+|++|...++.+.. .|++|++++++.++.+.+.+ . +. .++  |..+.. +.+   ..+++|++|++
T Consensus         6 ~~~~vlVTGasggiG~~~a~~l~~-~G~~V~~~~r~~~~~~~~~~~~~~~-~~~~~D~~~~~~~~~~~~~~~~id~vi~~   83 (244)
T 1cyd_A            6 SGLRALVTGAGKGIGRDTVKALHA-SGAKVVAVTRTNSDLVSLAKECPGI-EPVCVDLGDWDATEKALGGIGPVDLLVNN   83 (244)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHHSTTC-EEEECCTTCHHHHHHHHTTCCCCSEEEEC
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHhccCC-CcEEecCCCHHHHHHHHHHcCCCCEEEEC
Confidence            478999999999999998887766 49999999988777655433 3 33 223  322211 111   12368999999


Q ss_pred             Cc
Q 016265          304 IG  305 (392)
Q Consensus       304 ~G  305 (392)
                      .|
T Consensus        84 Ag   85 (244)
T 1cyd_A           84 AA   85 (244)
T ss_dssp             CC
T ss_pred             Cc
Confidence            77

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=96.29  E-value=0.015  Score=53.00  Aligned_cols=84  Identities=24%  Similarity=0.322  Sum_probs=60.1

Q ss_pred             CCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCCccccCCCCccEEEecCc-c-----
Q 016265          233 GKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFEDLPEKFDVVYDAIG-Q-----  306 (392)
Q Consensus       233 g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~~~~~~~D~vid~~G-~-----  306 (392)
                      +.+++|+| +|++|.+++..+... |.+++++.++.+|.+.+.++|.. +..+.     +.. .+|+||+|++ .     
T Consensus       118 ~k~vlvlG-aGGaaraia~~L~~~-G~~v~V~nRt~~ka~~la~~~~~-~~~~~-----~l~-~~DiVInaTp~Gm~~~~  188 (269)
T 3phh_A          118 YQNALILG-AGGSAKALACELKKQ-GLQVSVLNRSSRGLDFFQRLGCD-CFMEP-----PKS-AFDLIINATSASLHNEL  188 (269)
T ss_dssp             CCEEEEEC-CSHHHHHHHHHHHHT-TCEEEEECSSCTTHHHHHHHTCE-EESSC-----CSS-CCSEEEECCTTCCCCSC
T ss_pred             CCEEEEEC-CCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHCCCe-EecHH-----Hhc-cCCEEEEcccCCCCCCC
Confidence            88999998 899999988887774 88888888988887665577743 33322     222 7999999975 1     


Q ss_pred             -H--HHHHHhcccCCeEEEEcC
Q 016265          307 -C--DRAVKAIKEGGTVVALTG  325 (392)
Q Consensus       307 -~--~~~~~~l~~~G~iv~~g~  325 (392)
                       +  +.....++++..++++..
T Consensus       189 ~l~~~~l~~~l~~~~~v~D~vY  210 (269)
T 3phh_A          189 PLNKEVLKGYFKEGKLAYDLAY  210 (269)
T ss_dssp             SSCHHHHHHHHHHCSEEEESCC
T ss_pred             CCChHHHHhhCCCCCEEEEeCC
Confidence             1  222336778888777654

>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=96.29  E-value=0.0081  Score=54.32  Aligned_cols=73  Identities=26%  Similarity=0.439  Sum_probs=49.1

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHH----HhcC-Cc-EEE--eCCCCc-cccC-------CC
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFL----KSLG-AD-LAI--DYTKDN-FEDL-------PE  295 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~----~~~G-~~-~vi--~~~~~~-~~~~-------~~  295 (392)
                      .|+++||+||+|++|.+.++.... .|++|+++++++++.+.+    ++.| .. ..+  |..+.. +.+.       -+
T Consensus         9 ~~k~vlVTGas~gIG~aia~~l~~-~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   87 (262)
T 3pk0_A            9 QGRSVVVTGGTKGIGRGIATVFAR-AGANVAVAGRSTADIDACVADLDQLGSGKVIGVQTDVSDRAQCDALAGRAVEEFG   87 (262)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHHTTSSSCEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHHHHhhCCCcEEEEEcCCCCHHHHHHHHHHHHHHhC
Confidence            578999999999999998876666 499999999988776543    2333 12 222  222211 1111       23


Q ss_pred             CccEEEecCc
Q 016265          296 KFDVVYDAIG  305 (392)
Q Consensus       296 ~~D~vid~~G  305 (392)
                      ++|++|++.|
T Consensus        88 ~id~lvnnAg   97 (262)
T 3pk0_A           88 GIDVVCANAG   97 (262)
T ss_dssp             CCSEEEECCC
T ss_pred             CCCEEEECCC
Confidence            7999999977

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=96.28  E-value=0.023  Score=53.35  Aligned_cols=98  Identities=20%  Similarity=0.242  Sum_probs=65.0

Q ss_pred             HHHhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcC--CeEEEEeCCcccHHHHHhc----C------------Cc-EEEe
Q 016265          224 GLERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFG--ASRVAATSSTRNLEFLKSL----G------------AD-LAID  284 (392)
Q Consensus       224 al~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G--~~vv~~~~~~~~~~~~~~~----G------------~~-~vi~  284 (392)
                      .+....+.+|++||-.| +|. |..++.+++.. |  .+++.++.++..++.+++.    |            .. .++.
T Consensus        97 ~l~~l~~~~g~~VLDiG-~G~-G~~~~~la~~~-g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~  173 (336)
T 2b25_A           97 ILSMMDINPGDTVLEAG-SGS-GGMSLFLSKAV-GSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIH  173 (336)
T ss_dssp             HHHHHTCCTTCEEEEEC-CTT-SHHHHHHHHHH-CTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEE
T ss_pred             HHHhcCCCCCCEEEEeC-CCc-CHHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEE
Confidence            44556789999999998 666 88888899874 5  6888999998887777542    1            11 1222


Q ss_pred             CCCCcc-ccC-CCCccEEEecCc----cHHHHHHhcccCCeEEEEc
Q 016265          285 YTKDNF-EDL-PEKFDVVYDAIG----QCDRAVKAIKEGGTVVALT  324 (392)
Q Consensus       285 ~~~~~~-~~~-~~~~D~vid~~G----~~~~~~~~l~~~G~iv~~g  324 (392)
                      .+-... ... .+.||+|+-...    .+..+.++|++||+++.+.
T Consensus       174 ~d~~~~~~~~~~~~fD~V~~~~~~~~~~l~~~~~~LkpgG~lv~~~  219 (336)
T 2b25_A          174 KDISGATEDIKSLTFDAVALDMLNPHVTLPVFYPHLKHGGVCAVYV  219 (336)
T ss_dssp             SCTTCCC-------EEEEEECSSSTTTTHHHHGGGEEEEEEEEEEE
T ss_pred             CChHHcccccCCCCeeEEEECCCCHHHHHHHHHHhcCCCcEEEEEe
Confidence            211111 112 235999986543    3688999999999998664

>2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A

Probab=96.26  E-value=0.027  Score=50.90  Aligned_cols=38  Identities=16%  Similarity=0.225  Sum_probs=31.9

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCccc
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRN  270 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~  270 (392)
                      .|.++||+||+|++|...+..+.. .|++|+++++++++
T Consensus         7 ~~k~vlVTGas~gIG~~ia~~l~~-~G~~V~~~~r~~~~   44 (264)
T 2dtx_A            7 RDKVVIVTGASMGIGRAIAERFVD-EGSKVIDLSIHDPG   44 (264)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHH-TTCEEEEEESSCCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHH-CCCEEEEEecCccc
Confidence            468999999999999998877766 49999998887654

>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A*

Probab=96.25  E-value=0.016  Score=52.88  Aligned_cols=73  Identities=16%  Similarity=0.207  Sum_probs=49.4

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHH----HhcCCcE-EE--eCCCCc-ccc-------CCCC
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFL----KSLGADL-AI--DYTKDN-FED-------LPEK  296 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~----~~~G~~~-vi--~~~~~~-~~~-------~~~~  296 (392)
                      .|+++||+||+|++|.+.+..+.. .|++|+++++++++++.+    ++.|... .+  |..+.. +.+       .-++
T Consensus        21 ~~k~vlVTGas~gIG~~ia~~l~~-~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   99 (277)
T 2rhc_B           21 DSEVALVTGATSGIGLEIARRLGK-EGLRVFVCARGEEGLRTTLKELREAGVEADGRTCDVRSVPEIEALVAAVVERYGP   99 (277)
T ss_dssp             TSCEEEEETCSSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTCS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHhCC
Confidence            478999999999999998887766 499999999887765443    2335332 22  332221 111       1247


Q ss_pred             ccEEEecCc
Q 016265          297 FDVVYDAIG  305 (392)
Q Consensus       297 ~D~vid~~G  305 (392)
                      +|++|++.|
T Consensus       100 iD~lv~~Ag  108 (277)
T 2rhc_B          100 VDVLVNNAG  108 (277)
T ss_dssp             CSEEEECCC
T ss_pred             CCEEEECCC
Confidence            999999876

>1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2

Probab=96.25  E-value=0.012  Score=53.45  Aligned_cols=73  Identities=26%  Similarity=0.396  Sum_probs=49.4

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHH-hcCCcEEE--eCCCCc-cccC-------CCCccEE
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLK-SLGADLAI--DYTKDN-FEDL-------PEKFDVV  300 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~-~~G~~~vi--~~~~~~-~~~~-------~~~~D~v  300 (392)
                      .|.++||+||+|++|...++.+.. .|++|+++++++++.+.+. ++.....+  |..+.. +.+.       -+++|++
T Consensus         8 ~~k~vlVTGas~gIG~~ia~~l~~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~l   86 (270)
T 1yde_A            8 AGKVVVVTGGGRGIGAGIVRAFVN-SGARVVICDKDESGGRALEQELPGAVFILCDVTQEDDVKTLVSETIRRFGRLDCV   86 (270)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHHCTTEEEEECCTTSHHHHHHHHHHHHHHHSCCCEE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHHhcCCeEEEcCCCCHHHHHHHHHHHHHHcCCCCEE
Confidence            578999999999999998877766 4999999998887766553 33322223  322211 1111       2368999


Q ss_pred             EecCc
Q 016265          301 YDAIG  305 (392)
Q Consensus       301 id~~G  305 (392)
                      |++.|
T Consensus        87 v~nAg   91 (270)
T 1yde_A           87 VNNAG   91 (270)
T ss_dssp             EECCC
T ss_pred             EECCC
Confidence            99876

>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis}

Probab=96.24  E-value=0.012  Score=54.07  Aligned_cols=73  Identities=18%  Similarity=0.273  Sum_probs=50.8

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHH-hcCCcE-EE--eCCCCc-ccc---CCCCccEEEec
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLK-SLGADL-AI--DYTKDN-FED---LPEKFDVVYDA  303 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~-~~G~~~-vi--~~~~~~-~~~---~~~~~D~vid~  303 (392)
                      .|.+++|+||+|++|.+.++.+.. .|++|++++++.++.+.+. +++... .+  |..+.. +.+   ..+++|++|++
T Consensus        15 ~gk~vlVTGas~gIG~~~a~~L~~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~iD~lv~n   93 (291)
T 3rd5_A           15 AQRTVVITGANSGLGAVTARELAR-RGATVIMAVRDTRKGEAAARTMAGQVEVRELDLQDLSSVRRFADGVSGADVLINN   93 (291)
T ss_dssp             TTCEEEEECCSSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHTTSSSEEEEEECCTTCHHHHHHHHHTCCCEEEEEEC
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHH-CCCEEEEEECCHHHHHHHHHHhcCCeeEEEcCCCCHHHHHHHHHhcCCCCEEEEC
Confidence            578999999999999998877666 4999999999888876654 444322 22  222211 111   12478999998


Q ss_pred             Cc
Q 016265          304 IG  305 (392)
Q Consensus       304 ~G  305 (392)
                      .|
T Consensus        94 Ag   95 (291)
T 3rd5_A           94 AG   95 (291)
T ss_dssp             CC
T ss_pred             Cc
Confidence            77

>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A*

Probab=96.23  E-value=0.013  Score=52.40  Aligned_cols=73  Identities=22%  Similarity=0.353  Sum_probs=49.2

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHH----hcCCcE-EE--eCCCCc-cccC-------CCC
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLK----SLGADL-AI--DYTKDN-FEDL-------PEK  296 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~----~~G~~~-vi--~~~~~~-~~~~-------~~~  296 (392)
                      .|.++||+||+|++|.+.++.+.. .|++|++++++.++++.+.    +.|... .+  |..+.. +.+.       -++
T Consensus         6 ~~k~~lVTGas~gIG~aia~~l~~-~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~   84 (247)
T 2jah_A            6 QGKVALITGASSGIGEATARALAA-EGAAVAIAARRVEKLRALGDELTAAGAKVHVLELDVADRQGVDAAVASTVEALGG   84 (247)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHH-CCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence            478999999999999998877766 4999999998877765442    234332 22  332221 1111       237


Q ss_pred             ccEEEecCc
Q 016265          297 FDVVYDAIG  305 (392)
Q Consensus       297 ~D~vid~~G  305 (392)
                      +|++|++.|
T Consensus        85 id~lv~nAg   93 (247)
T 2jah_A           85 LDILVNNAG   93 (247)
T ss_dssp             CSEEEECCC
T ss_pred             CCEEEECCC
Confidence            899999876

>1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol, oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A* 1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A*

Probab=96.23  E-value=0.022  Score=50.96  Aligned_cols=73  Identities=18%  Similarity=0.216  Sum_probs=46.5

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCe-EEEEeCCcc--cHHHHHhc--CCc-EEE--eCCCC--ccccC-------C
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGAS-RVAATSSTR--NLEFLKSL--GAD-LAI--DYTKD--NFEDL-------P  294 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~-vv~~~~~~~--~~~~~~~~--G~~-~vi--~~~~~--~~~~~-------~  294 (392)
                      .|.+|+|+||+|++|...++.+.. .|++ |+++++++.  ..+.+++.  +.. .++  |..+.  .+.+.       .
T Consensus         4 ~~k~vlVtGas~gIG~~~a~~l~~-~G~~~v~~~~r~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   82 (254)
T 1sby_A            4 TNKNVIFVAALGGIGLDTSRELVK-RNLKNFVILDRVENPTALAELKAINPKVNITFHTYDVTVPVAESKKLLKKIFDQL   82 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHH-TCCSEEEEEESSCCHHHHHHHHHHCTTSEEEEEECCTTSCHHHHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCChHHHHHHHHHHH-CCCcEEEEEecCchHHHHHHHHHhCCCceEEEEEEecCCChHHHHHHHHHHHHhc
Confidence            468999999999999998877766 4996 777777653  34444333  222 122  33332  11111       1


Q ss_pred             CCccEEEecCc
Q 016265          295 EKFDVVYDAIG  305 (392)
Q Consensus       295 ~~~D~vid~~G  305 (392)
                      +++|++|++.|
T Consensus        83 g~id~lv~~Ag   93 (254)
T 1sby_A           83 KTVDILINGAG   93 (254)
T ss_dssp             SCCCEEEECCC
T ss_pred             CCCCEEEECCc
Confidence            37899999987

>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}

Probab=96.23  E-value=0.012  Score=54.03  Aligned_cols=73  Identities=16%  Similarity=0.231  Sum_probs=49.1

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHH-h---cCCcE-EE--eCCCCc-ccc-------CCCC
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLK-S---LGADL-AI--DYTKDN-FED-------LPEK  296 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~-~---~G~~~-vi--~~~~~~-~~~-------~~~~  296 (392)
                      .+.++||+||+|++|.+.++.... .|++|++++++.++++.+. +   .|... .+  |..+.. +.+       .-++
T Consensus        27 ~~k~~lVTGas~GIG~aia~~la~-~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~  105 (283)
T 3v8b_A           27 PSPVALITGAGSGIGRATALALAA-DGVTVGALGRTRTEVEEVADEIVGAGGQAIALEADVSDELQMRNAVRDLVLKFGH  105 (283)
T ss_dssp             CCCEEEEESCSSHHHHHHHHHHHH-TTCEEEEEESSHHHHHHHHHHHTTTTCCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence            578999999999999998876666 4999999999887765543 2   23322 22  322211 111       1237


Q ss_pred             ccEEEecCc
Q 016265          297 FDVVYDAIG  305 (392)
Q Consensus       297 ~D~vid~~G  305 (392)
                      +|++|++.|
T Consensus       106 iD~lVnnAg  114 (283)
T 3v8b_A          106 LDIVVANAG  114 (283)
T ss_dssp             CCEEEECCC
T ss_pred             CCEEEECCC
Confidence            999999876

>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2

Probab=96.23  E-value=0.013  Score=53.05  Aligned_cols=73  Identities=21%  Similarity=0.316  Sum_probs=48.7

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHH-h---c--CCcE-EE--eCCCCc-cccC-------C
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLK-S---L--GADL-AI--DYTKDN-FEDL-------P  294 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~-~---~--G~~~-vi--~~~~~~-~~~~-------~  294 (392)
                      .|.++||+||+|++|...++.+.. .|++|+++++++++++.+. +   .  |... .+  |..+.. +.+.       -
T Consensus        12 ~~k~vlVTGas~gIG~~ia~~l~~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~   90 (267)
T 1iy8_A           12 TDRVVLITGGGSGLGRATAVRLAA-EGAKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTERF   90 (267)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEEccCCCHHHHHHHHHHHHHHc
Confidence            478999999999999998877666 4999999998877665432 2   1  4332 22  332221 1111       2


Q ss_pred             CCccEEEecCc
Q 016265          295 EKFDVVYDAIG  305 (392)
Q Consensus       295 ~~~D~vid~~G  305 (392)
                      +++|++|++.|
T Consensus        91 g~id~lv~nAg  101 (267)
T 1iy8_A           91 GRIDGFFNNAG  101 (267)
T ss_dssp             SCCSEEEECCC
T ss_pred             CCCCEEEECCC
Confidence            36899999876

>2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A

Probab=96.22  E-value=0.0077  Score=57.94  Aligned_cols=86  Identities=19%  Similarity=0.157  Sum_probs=65.7

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCCccccCCCCccEEEecCcc-----
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFEDLPEKFDVVYDAIGQ-----  306 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~~~~~~~D~vid~~G~-----  306 (392)
                      .|.+|.|+| .|.+|...++.++. +|.+|++.+++..+.+.++++|+..+     .++.++.+..|+|+.++..     
T Consensus       190 ~gktvGIIG-lG~IG~~vA~~l~a-~G~~V~~~d~~~~~~~~~~~~G~~~~-----~~l~ell~~aDvV~l~~Plt~~t~  262 (393)
T 2nac_A          190 EAMHVGTVA-AGRIGLAVLRRLAP-FDVHLHYTDRHRLPESVEKELNLTWH-----ATREDMYPVCDVVTLNCPLHPETE  262 (393)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHGG-GTCEEEEECSSCCCHHHHHHHTCEEC-----SSHHHHGGGCSEEEECSCCCTTTT
T ss_pred             CCCEEEEEe-ECHHHHHHHHHHHh-CCCEEEEEcCCccchhhHhhcCceec-----CCHHHHHhcCCEEEEecCCchHHH
Confidence            578999998 99999999999998 69999998888777777777786431     1234445578999988651     


Q ss_pred             --H-HHHHHhcccCCeEEEEc
Q 016265          307 --C-DRAVKAIKEGGTVVALT  324 (392)
Q Consensus       307 --~-~~~~~~l~~~G~iv~~g  324 (392)
                        + ...++.|+++..++.++
T Consensus       263 ~li~~~~l~~mk~gailIN~a  283 (393)
T 2nac_A          263 HMINDETLKLFKRGAYIVNTA  283 (393)
T ss_dssp             TCBSHHHHTTSCTTEEEEECS
T ss_pred             HHhhHHHHhhCCCCCEEEECC
Confidence              2 56778888888887765

>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=96.22  E-value=0.016  Score=52.36  Aligned_cols=74  Identities=20%  Similarity=0.249  Sum_probs=50.1

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHH----HhcCCcE-EE--eCCCCc-ccc-------CCC
Q 016265          231 SAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFL----KSLGADL-AI--DYTKDN-FED-------LPE  295 (392)
Q Consensus       231 ~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~----~~~G~~~-vi--~~~~~~-~~~-------~~~  295 (392)
                      -.|+++||+||++++|.+.++.... .|++|++++++.++++.+    ++.|... .+  |..+.. +.+       .-+
T Consensus         9 l~~k~vlVTGas~gIG~aia~~l~~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   87 (264)
T 3ucx_A            9 LTDKVVVISGVGPALGTTLARRCAE-QGADLVLAARTVERLEDVAKQVTDTGRRALSVGTDITDDAQVAHLVDETMKAYG   87 (264)
T ss_dssp             TTTCEEEEESCCTTHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTS
T ss_pred             cCCcEEEEECCCcHHHHHHHHHHHH-CcCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            3578999999999999997776666 499999999988776544    2334332 22  332221 111       124


Q ss_pred             CccEEEecCc
Q 016265          296 KFDVVYDAIG  305 (392)
Q Consensus       296 ~~D~vid~~G  305 (392)
                      ++|++|++.|
T Consensus        88 ~id~lv~nAg   97 (264)
T 3ucx_A           88 RVDVVINNAF   97 (264)
T ss_dssp             CCSEEEECCC
T ss_pred             CCcEEEECCC
Confidence            7899999875

>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A*

Probab=96.21  E-value=0.014  Score=52.74  Aligned_cols=73  Identities=21%  Similarity=0.304  Sum_probs=49.1

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHH-hc----CCcE-EE--eCCCCc-cccC-------CC
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLK-SL----GADL-AI--DYTKDN-FEDL-------PE  295 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~-~~----G~~~-vi--~~~~~~-~~~~-------~~  295 (392)
                      .|.++||+||+|++|...++.+.. .|++|+++++++++.+.+. ++    |... .+  |..+.. +.+.       -+
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~-~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g   84 (263)
T 3ai3_A            6 SGKVAVITGSSSGIGLAIAEGFAK-EGAHIVLVARQVDRLHEAARSLKEKFGVRVLEVAVDVATPEGVDAVVESVRSSFG   84 (263)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCchHHHHHHHHHHH-CCCEEEEEcCCHHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            478999999999999998877766 4999999998877655432 22    5332 22  332221 1111       23


Q ss_pred             CccEEEecCc
Q 016265          296 KFDVVYDAIG  305 (392)
Q Consensus       296 ~~D~vid~~G  305 (392)
                      ++|++|++.|
T Consensus        85 ~id~lv~~Ag   94 (263)
T 3ai3_A           85 GADILVNNAG   94 (263)
T ss_dssp             SCSEEEECCC
T ss_pred             CCCEEEECCC
Confidence            7899999976

>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A*

Probab=96.21  E-value=0.014  Score=51.48  Aligned_cols=72  Identities=22%  Similarity=0.294  Sum_probs=49.1

Q ss_pred             CCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHH-----hcCCcEE-E--eCCCC-ccccC-------CCC
Q 016265          233 GKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLK-----SLGADLA-I--DYTKD-NFEDL-------PEK  296 (392)
Q Consensus       233 g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~-----~~G~~~v-i--~~~~~-~~~~~-------~~~  296 (392)
                      ++++||+||+|++|...++.+.. .|++|++++++.++++.+.     ..|.... +  |..+. .+.+.       .++
T Consensus         2 ~k~vlITGas~gIG~~ia~~l~~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~   80 (235)
T 3l77_A            2 MKVAVITGASRGIGEAIARALAR-DGYALALGARSVDRLEKIAHELMQEQGVEVFYHHLDVSKAESVEEFSKKVLERFGD   80 (235)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHCC-HHHHHSS
T ss_pred             CCEEEEECCCcHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHHHHhhcCCeEEEEEeccCCHHHHHHHHHHHHHhcCC
Confidence            67899999999999998877766 4999999999887765442     3344322 2  33222 12111       137


Q ss_pred             ccEEEecCc
Q 016265          297 FDVVYDAIG  305 (392)
Q Consensus       297 ~D~vid~~G  305 (392)
                      +|++|++.|
T Consensus        81 id~li~~Ag   89 (235)
T 3l77_A           81 VDVVVANAG   89 (235)
T ss_dssp             CSEEEECCC
T ss_pred             CCEEEECCc
Confidence            899999976

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=96.21  E-value=0.025  Score=47.84  Aligned_cols=97  Identities=14%  Similarity=0.154  Sum_probs=65.7

Q ss_pred             HHhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHh----cCCc--EEEeCCCCcccc-CCCCc
Q 016265          225 LERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKS----LGAD--LAIDYTKDNFED-LPEKF  297 (392)
Q Consensus       225 l~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~----~G~~--~vi~~~~~~~~~-~~~~~  297 (392)
                      +....+++|++||=+| +| .|..+..+++.  +.+++.++.+++.++.+++    .|.+  .++......+.. ..+.|
T Consensus        15 ~l~~~~~~~~~vLDiG-cG-~G~~~~~la~~--~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~~~~~~~f   90 (185)
T 3mti_A           15 FLAEVLDDESIVVDAT-MG-NGNDTAFLAGL--SKKVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLDHYVREPI   90 (185)
T ss_dssp             HHHTTCCTTCEEEESC-CT-TSHHHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGGGTCCSCE
T ss_pred             HHHHhCCCCCEEEEEc-CC-CCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHhhccCCc
Confidence            3455678999999987 55 48899999975  8899999999988777653    3432  222221122221 24569


Q ss_pred             cEEEecCc------------------cHHHHHHhcccCCeEEEEcC
Q 016265          298 DVVYDAIG------------------QCDRAVKAIKEGGTVVALTG  325 (392)
Q Consensus       298 D~vid~~G------------------~~~~~~~~l~~~G~iv~~g~  325 (392)
                      |+|+-..+                  .+..+.+.|+|||+++....
T Consensus        91 D~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~  136 (185)
T 3mti_A           91 RAAIFNLGYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIY  136 (185)
T ss_dssp             EEEEEEEC-----------CHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             CEEEEeCCCCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEe
Confidence            99986532                  13677789999999987644

>1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A*

Probab=96.21  E-value=0.0074  Score=53.77  Aligned_cols=39  Identities=18%  Similarity=0.248  Sum_probs=32.2

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCccc
Q 016265          231 SAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRN  270 (392)
Q Consensus       231 ~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~  270 (392)
                      ..+.++||+||+|++|...++.+.. .|++|+++++++++
T Consensus         5 ~~~k~vlVTGas~gIG~~ia~~l~~-~G~~V~~~~r~~~~   43 (241)
T 1dhr_A            5 GEARRVLVYGGRGALGSRCVQAFRA-RNWWVASIDVVENE   43 (241)
T ss_dssp             -CCCEEEEETTTSHHHHHHHHHHHT-TTCEEEEEESSCCT
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHh-CCCEEEEEeCChhh
Confidence            4578999999999999998887766 49999999887654

>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}

Probab=96.20  E-value=0.012  Score=52.78  Aligned_cols=73  Identities=18%  Similarity=0.237  Sum_probs=49.0

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHH----hcCCcE-EE--eCCCCc-cccC-------CCC
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLK----SLGADL-AI--DYTKDN-FEDL-------PEK  296 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~----~~G~~~-vi--~~~~~~-~~~~-------~~~  296 (392)
                      .|+++||+||+|++|...++.... .|++|++++++.++++.+.    +.+... .+  |..+.. +.+.       .++
T Consensus         8 ~~k~vlITGas~giG~~~a~~l~~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~   86 (253)
T 3qiv_A            8 ENKVGIVTGSGGGIGQAYAEALAR-EGAAVVVADINAEAAEAVAKQIVADGGTAISVAVDVSDPESAKAMADRTLAEFGG   86 (253)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEECCCChHHHHHHHHHHH-CCCEEEEEcCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            478999999999999998777666 4999999999887765542    234322 22  222211 1111       237


Q ss_pred             ccEEEecCc
Q 016265          297 FDVVYDAIG  305 (392)
Q Consensus       297 ~D~vid~~G  305 (392)
                      +|++|++.|
T Consensus        87 id~li~~Ag   95 (253)
T 3qiv_A           87 IDYLVNNAA   95 (253)
T ss_dssp             CCEEEECCC
T ss_pred             CCEEEECCC
Confidence            899999875

>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}

Probab=96.20  E-value=0.0099  Score=54.17  Aligned_cols=74  Identities=24%  Similarity=0.334  Sum_probs=49.4

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHH-HhcCCc-EEE--eCCCCc-cccC-------CCCcc
Q 016265          231 SAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFL-KSLGAD-LAI--DYTKDN-FEDL-------PEKFD  298 (392)
Q Consensus       231 ~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~-~~~G~~-~vi--~~~~~~-~~~~-------~~~~D  298 (392)
                      ..+.++||+||+|++|.+.+..+.. .|++|++++++.++++.+ ++++.. ..+  |..+.. +.+.       -+++|
T Consensus        26 ~~~k~~lVTGas~GIG~aia~~la~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD  104 (272)
T 4dyv_A           26 TGKKIAIVTGAGSGVGRAVAVALAG-AGYGVALAGRRLDALQETAAEIGDDALCVPTDVTDPDSVRALFTATVEKFGRVD  104 (272)
T ss_dssp             --CCEEEETTTTSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHTSCCEEEECCTTSHHHHHHHHHHHHHHHSCCC
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHH-CCCEEEEEECCHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHHHHcCCCC
Confidence            3578999999999999998776666 499999999988876654 445422 222  322211 1111       23799


Q ss_pred             EEEecCc
Q 016265          299 VVYDAIG  305 (392)
Q Consensus       299 ~vid~~G  305 (392)
                      ++|++.|
T Consensus       105 ~lVnnAg  111 (272)
T 4dyv_A          105 VLFNNAG  111 (272)
T ss_dssp             EEEECCC
T ss_pred             EEEECCC
Confidence            9999876

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=96.20  E-value=0.027  Score=51.37  Aligned_cols=85  Identities=13%  Similarity=0.101  Sum_probs=60.1

Q ss_pred             eEEEEcCCCcHHHHHHHHHHHhcCC--eEEEEeCCcccHHHHHhcCCcEEEeCCCCccccCCC-CccEEEecCcc-----
Q 016265          235 SILVLNGSGGVGSLVIQLAKQVFGA--SRVAATSSTRNLEFLKSLGADLAIDYTKDNFEDLPE-KFDVVYDAIGQ-----  306 (392)
Q Consensus       235 ~VlI~Ga~G~vG~~aiqlak~~~G~--~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~~~~~-~~D~vid~~G~-----  306 (392)
                      +|.|+| +|.+|.+.++.++. .|.  +|++.++++++.+.++++|......   .+..+..+ ++|+||.|+..     
T Consensus         3 ~I~iIG-~G~mG~~~a~~l~~-~g~~~~V~~~d~~~~~~~~~~~~g~~~~~~---~~~~~~~~~~aDvVilavp~~~~~~   77 (281)
T 2g5c_A            3 NVLIVG-VGFMGGSFAKSLRR-SGFKGKIYGYDINPESISKAVDLGIIDEGT---TSIAKVEDFSPDFVMLSSPVRTFRE   77 (281)
T ss_dssp             EEEEES-CSHHHHHHHHHHHH-TTCCSEEEEECSCHHHHHHHHHTTSCSEEE---SCGGGGGGTCCSEEEECSCHHHHHH
T ss_pred             EEEEEe-cCHHHHHHHHHHHh-cCCCcEEEEEeCCHHHHHHHHHCCCccccc---CCHHHHhcCCCCEEEEcCCHHHHHH
Confidence            689998 99999998888877 487  8888888988888888888642111   12233345 78999999872     


Q ss_pred             -HHHHHHhcccCCeEEEEc
Q 016265          307 -CDRAVKAIKEGGTVVALT  324 (392)
Q Consensus       307 -~~~~~~~l~~~G~iv~~g  324 (392)
                       +......++++..++.++
T Consensus        78 v~~~l~~~l~~~~iv~~~~   96 (281)
T 2g5c_A           78 IAKKLSYILSEDATVTDQG   96 (281)
T ss_dssp             HHHHHHHHSCTTCEEEECC
T ss_pred             HHHHHHhhCCCCcEEEECC
Confidence             233445567776666554

>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}

Probab=96.20  E-value=0.0079  Score=56.14  Aligned_cols=105  Identities=24%  Similarity=0.244  Sum_probs=74.4

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCCccccCCCCccEEEecCcc----
Q 016265          231 SAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFEDLPEKFDVVYDAIGQ----  306 (392)
Q Consensus       231 ~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~~~~~~~D~vid~~G~----  306 (392)
                      -.|.+|.|+| .|.+|...++.++. +|.+|++.+++.++. .++++|+...      +..+..+..|+|+.++..    
T Consensus       140 l~g~~vgIIG-~G~IG~~~A~~l~~-~G~~V~~~d~~~~~~-~~~~~g~~~~------~l~ell~~aDvVvl~~P~~~~t  210 (313)
T 2ekl_A          140 LAGKTIGIVG-FGRIGTKVGIIANA-MGMKVLAYDILDIRE-KAEKINAKAV------SLEELLKNSDVISLHVTVSKDA  210 (313)
T ss_dssp             CTTCEEEEES-CSHHHHHHHHHHHH-TTCEEEEECSSCCHH-HHHHTTCEEC------CHHHHHHHCSEEEECCCCCTTS
T ss_pred             CCCCEEEEEe-eCHHHHHHHHHHHH-CCCEEEEECCCcchh-HHHhcCceec------CHHHHHhhCCEEEEeccCChHH
Confidence            3578999998 99999999999998 599999998877664 4667786421      233444468999998751    


Q ss_pred             ---H-HHHHHhcccCCeEEEEcCCCCCCceEEEEeecHHHHHHHHHHHHCCCcc
Q 016265          307 ---C-DRAVKAIKEGGTVVALTGAVTPPGFRFVVTSNGEVLKKLNPYLESGKVK  356 (392)
Q Consensus       307 ---~-~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~l~  356 (392)
                         + +..++.+++++.++.++....            -+-+.+.+.+++|.+.
T Consensus       211 ~~li~~~~l~~mk~ga~lIn~arg~~------------vd~~aL~~aL~~g~i~  252 (313)
T 2ekl_A          211 KPIIDYPQFELMKDNVIIVNTSRAVA------------VNGKALLDYIKKGKVY  252 (313)
T ss_dssp             CCSBCHHHHHHSCTTEEEEESSCGGG------------BCHHHHHHHHHTTCEE
T ss_pred             HHhhCHHHHhcCCCCCEEEECCCCcc------------cCHHHHHHHHHcCCCc
Confidence               2 567889999988887754210            0124555667777664

>3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase, short chain dehydrogenase/oxidoreductase, SD comamonas testosteroni; 1.80A {Pandoraea pnomenusa} SCOP: c.2.1.2 PDB: 2y99_A* 3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A*

Probab=96.19  E-value=0.011  Score=54.02  Aligned_cols=73  Identities=21%  Similarity=0.292  Sum_probs=50.1

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHH-hcCCcE-EE--eCCCCc-ccc-------CCCCccE
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLK-SLGADL-AI--DYTKDN-FED-------LPEKFDV  299 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~-~~G~~~-vi--~~~~~~-~~~-------~~~~~D~  299 (392)
                      .|+++||+||++++|.+.+..... .|++|++++++.++++.+. +++... .+  |..+.. +.+       ..+++|+
T Consensus         4 ~gk~~lVTGas~GIG~aia~~la~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD~   82 (281)
T 3zv4_A            4 TGEVALITGGASGLGRALVDRFVA-EGARVAVLDKSAERLRELEVAHGGNAVGVVGDVRSLQDQKRAAERCLAAFGKIDT   82 (281)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHHTBTTEEEEECCTTCHHHHHHHHHHHHHHHSCCCE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHH-CcCEEEEEeCCHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHHHHHhcCCCCE
Confidence            478999999999999998777666 4999999999888776654 454332 22  322211 111       1247899


Q ss_pred             EEecCc
Q 016265          300 VYDAIG  305 (392)
Q Consensus       300 vid~~G  305 (392)
                      +|++.|
T Consensus        83 lvnnAg   88 (281)
T 3zv4_A           83 LIPNAG   88 (281)
T ss_dssp             EECCCC
T ss_pred             EEECCC
Confidence            999876

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=96.19  E-value=0.017  Score=51.88  Aligned_cols=94  Identities=17%  Similarity=0.254  Sum_probs=64.0

Q ss_pred             HhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhc----CCc--EEEeCCCCccccCCCCccE
Q 016265          226 ERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSL----GAD--LAIDYTKDNFEDLPEKFDV  299 (392)
Q Consensus       226 ~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~----G~~--~vi~~~~~~~~~~~~~~D~  299 (392)
                      .....+++++||-+| +| .|..+..+++.  +.+++.++.+++.++.+++.    |..  .++..+-..+....+.||+
T Consensus        31 ~~l~~~~~~~vLDiG-cG-~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~~fD~  106 (260)
T 1vl5_A           31 QIAALKGNEEVLDVA-TG-GGHVANAFAPF--VKKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTDERFHI  106 (260)
T ss_dssp             HHHTCCSCCEEEEET-CT-TCHHHHHHGGG--SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCTTCEEE
T ss_pred             HHhCCCCCCEEEEEe-CC-CCHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecHHhCCCCCCCEEE
Confidence            345677899999998 55 68888888875  56899999998887776542    422  1222222222112357999


Q ss_pred             EEecCc---------cHHHHHHhcccCCeEEEE
Q 016265          300 VYDAIG---------QCDRAVKAIKEGGTVVAL  323 (392)
Q Consensus       300 vid~~G---------~~~~~~~~l~~~G~iv~~  323 (392)
                      |+....         .+..+.++|+|||+++..
T Consensus       107 V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~~~  139 (260)
T 1vl5_A          107 VTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLV  139 (260)
T ss_dssp             EEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEE
T ss_pred             EEEhhhhHhcCCHHHHHHHHHHHcCCCCEEEEE
Confidence            997633         257888999999999875

>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}

Probab=96.19  E-value=0.0088  Score=53.79  Aligned_cols=72  Identities=15%  Similarity=0.229  Sum_probs=49.8

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHH----HhcCCcE-EE--eCCCCc-cc-------cCCCC
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFL----KSLGADL-AI--DYTKDN-FE-------DLPEK  296 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~----~~~G~~~-vi--~~~~~~-~~-------~~~~~  296 (392)
                      .|.++||+||+|++|.+.++.... .|++|++++++.++++.+    ++.|... .+  |..+.. +.       +. ++
T Consensus         6 ~~k~vlVTGas~GIG~aia~~l~~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~-g~   83 (252)
T 3h7a_A            6 RNATVAVIGAGDYIGAEIAKKFAA-EGFTVFAGRRNGEKLAPLVAEIEAAGGRIVARSLDARNEDEVTAFLNAADAH-AP   83 (252)
T ss_dssp             CSCEEEEECCSSHHHHHHHHHHHH-TTCEEEEEESSGGGGHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHH-SC
T ss_pred             CCCEEEEECCCchHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECcCCCHHHHHHHHHHHHhh-CC
Confidence            578999999999999998877666 499999999988776544    2335332 22  332221 11       12 47


Q ss_pred             ccEEEecCc
Q 016265          297 FDVVYDAIG  305 (392)
Q Consensus       297 ~D~vid~~G  305 (392)
                      +|++|++.|
T Consensus        84 id~lv~nAg   92 (252)
T 3h7a_A           84 LEVTIFNVG   92 (252)
T ss_dssp             EEEEEECCC
T ss_pred             ceEEEECCC
Confidence            899999987

>1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A*

Probab=96.19  E-value=0.015  Score=52.21  Aligned_cols=73  Identities=23%  Similarity=0.314  Sum_probs=47.5

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeC-CcccHHHH----HhcCCcE-EE--eCCCCc-cccC-------CC
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATS-STRNLEFL----KSLGADL-AI--DYTKDN-FEDL-------PE  295 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~-~~~~~~~~----~~~G~~~-vi--~~~~~~-~~~~-------~~  295 (392)
                      .|.+|||+||+|++|...+..+.. .|++|+++++ ++++.+.+    ++.+... ++  |..+.. +.+.       .+
T Consensus         6 ~~k~vlITGasggiG~~~a~~l~~-~G~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g   84 (261)
T 1gee_A            6 EGKVVVITGSSTGLGKSMAIRFAT-EKAKVVVNYRSKEDEANSVLEEIKKVGGEAIAVKGDVTVESDVINLVQSAIKEFG   84 (261)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHH-TTCEEEEEESSCHHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHH-CCCEEEEEcCCChHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            468999999999999998877666 4999999988 66554433    2334322 22  322211 1111       13


Q ss_pred             CccEEEecCc
Q 016265          296 KFDVVYDAIG  305 (392)
Q Consensus       296 ~~D~vid~~G  305 (392)
                      ++|++|++.|
T Consensus        85 ~id~li~~Ag   94 (261)
T 1gee_A           85 KLDVMINNAG   94 (261)
T ss_dssp             CCCEEEECCC
T ss_pred             CCCEEEECCC
Confidence            7899999876

>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0

Probab=96.18  E-value=0.012  Score=52.44  Aligned_cols=43  Identities=26%  Similarity=0.329  Sum_probs=35.6

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHH
Q 016265          231 SAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFL  274 (392)
Q Consensus       231 ~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~  274 (392)
                      -.|++++|+||+|++|...+..... .|++|+++++++++++.+
T Consensus        12 l~~k~vlITGas~gIG~~ia~~l~~-~G~~V~~~~r~~~~~~~~   54 (247)
T 3i1j_A           12 LKGRVILVTGAARGIGAAAARAYAA-HGASVVLLGRTEASLAEV   54 (247)
T ss_dssp             TTTCEEEESSTTSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHH
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHH-CCCEEEEEecCHHHHHHH
Confidence            3578999999999999997777666 499999999988776554

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=96.18  E-value=0.012  Score=51.09  Aligned_cols=94  Identities=15%  Similarity=0.058  Sum_probs=60.5

Q ss_pred             HhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhc-CC----------------c-EEEeCCC
Q 016265          226 ERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSL-GA----------------D-LAIDYTK  287 (392)
Q Consensus       226 ~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~-G~----------------~-~vi~~~~  287 (392)
                      ....+.++.+||..| +| .|..+..+++.  |.+|+.++.+++-++.+++. +.                . ..+..+-
T Consensus        16 ~~l~~~~~~~vLD~G-CG-~G~~~~~la~~--g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~   91 (203)
T 1pjz_A           16 SSLNVVPGARVLVPL-CG-KSQDMSWLSGQ--GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDF   91 (203)
T ss_dssp             HHHCCCTTCEEEETT-TC-CSHHHHHHHHH--CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECC
T ss_pred             HhcccCCCCEEEEeC-CC-CcHhHHHHHHC--CCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECcc
Confidence            445677899999997 44 48888889975  88999999999988887643 21                0 1111111


Q ss_pred             CccccCC-CCccEEEecCc--c---------HHHHHHhcccCCeEEEE
Q 016265          288 DNFEDLP-EKFDVVYDAIG--Q---------CDRAVKAIKEGGTVVAL  323 (392)
Q Consensus       288 ~~~~~~~-~~~D~vid~~G--~---------~~~~~~~l~~~G~iv~~  323 (392)
                      .++.... +.||+|++..-  .         +..+.++|+|||+++.+
T Consensus        92 ~~l~~~~~~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~LkpgG~~~l~  139 (203)
T 1pjz_A           92 FALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLI  139 (203)
T ss_dssp             SSSTHHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEE
T ss_pred             ccCCcccCCCEEEEEECcchhhCCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence            1111011 46999997422  1         35678899999994333

>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis}

Probab=96.17  E-value=0.012  Score=53.09  Aligned_cols=73  Identities=19%  Similarity=0.294  Sum_probs=49.0

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHH----HhcCCcE-EE--eCCCCc-cccC-------CCC
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFL----KSLGADL-AI--DYTKDN-FEDL-------PEK  296 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~----~~~G~~~-vi--~~~~~~-~~~~-------~~~  296 (392)
                      .|.++||+||+|++|.+.++.... .|++|++++++.++.+.+    ++.|... .+  |..+.. ..+.       -++
T Consensus        11 ~~k~vlVTGas~gIG~~ia~~l~~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~   89 (256)
T 3gaf_A           11 NDAVAIVTGAAAGIGRAIAGTFAK-AGASVVVTDLKSEGAEAVAAAIRQAGGKAIGLECNVTDEQHREAVIKAALDQFGK   89 (256)
T ss_dssp             TTCEEEECSCSSHHHHHHHHHHHH-HTCEEEEEESSHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence            578999999999999997776655 399999999887765543    3345332 22  322211 1111       237


Q ss_pred             ccEEEecCc
Q 016265          297 FDVVYDAIG  305 (392)
Q Consensus       297 ~D~vid~~G  305 (392)
                      +|++|++.|
T Consensus        90 id~lv~nAg   98 (256)
T 3gaf_A           90 ITVLVNNAG   98 (256)
T ss_dssp             CCEEEECCC
T ss_pred             CCEEEECCC
Confidence            899999876

>2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A*

Probab=96.17  E-value=0.011  Score=52.75  Aligned_cols=73  Identities=19%  Similarity=0.291  Sum_probs=49.9

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHH-HhcCCcE--EE--eCCCCc-cccC------CCCccE
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFL-KSLGADL--AI--DYTKDN-FEDL------PEKFDV  299 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~-~~~G~~~--vi--~~~~~~-~~~~------~~~~D~  299 (392)
                      .|.+++|+||+|++|...++.+.. .|++|++++++.++.+.+ ++++...  .+  |..+.. +.+.      .+++|+
T Consensus        10 ~~k~vlITGasggiG~~la~~l~~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~id~   88 (254)
T 2wsb_A           10 DGACAAVTGAGSGIGLEICRAFAA-SGARLILIDREAAALDRAAQELGAAVAARIVADVTDAEAMTAAAAEAEAVAPVSI   88 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHGGGEEEEEECCTTCHHHHHHHHHHHHHHSCCCE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHHhcccceeEEEEecCCHHHHHHHHHHHHhhCCCcE
Confidence            478999999999999998887766 499999999987776544 3444332  22  332221 1111      147899


Q ss_pred             EEecCc
Q 016265          300 VYDAIG  305 (392)
Q Consensus       300 vid~~G  305 (392)
                      +|++.|
T Consensus        89 li~~Ag   94 (254)
T 2wsb_A           89 LVNSAG   94 (254)
T ss_dssp             EEECCC
T ss_pred             EEECCc
Confidence            999876

>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0

Probab=96.17  E-value=0.016  Score=52.71  Aligned_cols=73  Identities=22%  Similarity=0.285  Sum_probs=50.1

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHH-HhcCCcE-EE--eCCCCc-cccC-------CCCccE
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFL-KSLGADL-AI--DYTKDN-FEDL-------PEKFDV  299 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~-~~~G~~~-vi--~~~~~~-~~~~-------~~~~D~  299 (392)
                      .|+++||+||+|++|.+.++.... .|++|+++++++++++.+ +++|... .+  |..+.. +.+.       -+++|+
T Consensus        10 ~~k~vlVTGas~gIG~aia~~l~~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~   88 (271)
T 3tzq_B           10 ENKVAIITGACGGIGLETSRVLAR-AGARVVLADLPETDLAGAAASVGRGAVHHVVDLTNEVSVRALIDFTIDTFGRLDI   88 (271)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHH-TTCEEEEEECTTSCHHHHHHHHCTTCEEEECCTTCHHHHHHHHHHHHHHHSCCCE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHH-CCCEEEEEcCCHHHHHHHHHHhCCCeEEEECCCCCHHHHHHHHHHHHHHcCCCCE
Confidence            478999999999999988776666 499999999988876655 4555332 22  332221 1111       237899


Q ss_pred             EEecCc
Q 016265          300 VYDAIG  305 (392)
Q Consensus       300 vid~~G  305 (392)
                      +|++.|
T Consensus        89 lv~nAg   94 (271)
T 3tzq_B           89 VDNNAA   94 (271)
T ss_dssp             EEECCC
T ss_pred             EEECCC
Confidence            999866

>1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A*

Probab=96.17  E-value=0.012  Score=52.93  Aligned_cols=73  Identities=22%  Similarity=0.313  Sum_probs=50.1

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHH-HhcCCcE-EE--eCCCC-ccccC-------CCCccE
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFL-KSLGADL-AI--DYTKD-NFEDL-------PEKFDV  299 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~-~~~G~~~-vi--~~~~~-~~~~~-------~~~~D~  299 (392)
                      .|.++||+||+|++|.+.++.+.. .|++|+++++++++.+.+ +++|... .+  |..+. .+.+.       -+++|+
T Consensus         4 ~~k~vlVTGas~gIG~~ia~~l~~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~iD~   82 (254)
T 1hdc_A            4 SGKTVIITGGARGLGAEAARQAVA-AGARVVLADVLDEEGAATARELGDAARYQHLDVTIEEDWQRVVAYAREEFGSVDG   82 (254)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHTTGGGEEEEECCTTCHHHHHHHHHHHHHHHSCCCE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHHhCCceeEEEecCCCHHHHHHHHHHHHHHcCCCCE
Confidence            478999999999999998887766 499999999988776654 3444322 22  33222 11111       137899


Q ss_pred             EEecCc
Q 016265          300 VYDAIG  305 (392)
Q Consensus       300 vid~~G  305 (392)
                      +|++.|
T Consensus        83 lv~nAg   88 (254)
T 1hdc_A           83 LVNNAG   88 (254)
T ss_dssp             EEECCC
T ss_pred             EEECCC
Confidence            999876

>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2

Probab=96.16  E-value=0.014  Score=52.99  Aligned_cols=73  Identities=19%  Similarity=0.373  Sum_probs=49.8

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHH----HhcCCcE-EE--eCCCCc-ccc-------CC-C
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFL----KSLGADL-AI--DYTKDN-FED-------LP-E  295 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~----~~~G~~~-vi--~~~~~~-~~~-------~~-~  295 (392)
                      .|.++||+||+|++|.+.++.+.. .|++|+++++++++++.+    ++.|... .+  |..+.. +.+       .- +
T Consensus        20 ~~k~vlVTGas~gIG~aia~~l~~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~g   98 (273)
T 1ae1_A           20 KGTTALVTGGSKGIGYAIVEELAG-LGARVYTCSRNEKELDECLEIWREKGLNVEGSVCDLLSRTERDKLMQTVAHVFDG   98 (273)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTTS
T ss_pred             CCCEEEEECCcchHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence            478999999999999998887766 499999999987765543    2335332 22  332221 111       12 5


Q ss_pred             CccEEEecCc
Q 016265          296 KFDVVYDAIG  305 (392)
Q Consensus       296 ~~D~vid~~G  305 (392)
                      ++|++|++.|
T Consensus        99 ~id~lv~nAg  108 (273)
T 1ae1_A           99 KLNILVNNAG  108 (273)
T ss_dssp             CCCEEEECCC
T ss_pred             CCcEEEECCC
Confidence            7999999976

>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti}

Probab=96.16  E-value=0.0098  Score=54.46  Aligned_cols=73  Identities=22%  Similarity=0.252  Sum_probs=47.7

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHH-hc---C-Cc-EEE--eCCCCc-ccc-------CCC
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLK-SL---G-AD-LAI--DYTKDN-FED-------LPE  295 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~-~~---G-~~-~vi--~~~~~~-~~~-------~~~  295 (392)
                      .|+++||+||+|++|.+.++.+.. .|++|+++++++++++.+. ++   + .. ..+  |..+.+ +.+       .-+
T Consensus        32 ~gk~~lVTGas~GIG~aia~~la~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g  110 (281)
T 4dry_A           32 EGRIALVTGGGTGVGRGIAQALSA-EGYSVVITGRRPDVLDAAAGEIGGRTGNIVRAVVCDVGDPDQVAALFAAVRAEFA  110 (281)
T ss_dssp             --CEEEETTTTSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHH-CCCEEEEEECCHHHHHHHHHHHHhcCCCeEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            578999999999999998777666 4999999999887765442 22   2 22 223  332221 111       124


Q ss_pred             CccEEEecCc
Q 016265          296 KFDVVYDAIG  305 (392)
Q Consensus       296 ~~D~vid~~G  305 (392)
                      ++|++|++.|
T Consensus       111 ~iD~lvnnAG  120 (281)
T 4dry_A          111 RLDLLVNNAG  120 (281)
T ss_dssp             CCSEEEECCC
T ss_pred             CCCEEEECCC
Confidence            7899999876

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*

Probab=96.16  E-value=0.019  Score=50.87  Aligned_cols=97  Identities=12%  Similarity=0.218  Sum_probs=66.0

Q ss_pred             HHHhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHh----cCCc--EEEeCCCCccccCCCCc
Q 016265          224 GLERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKS----LGAD--LAIDYTKDNFEDLPEKF  297 (392)
Q Consensus       224 al~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~----~G~~--~vi~~~~~~~~~~~~~~  297 (392)
                      .+...+++++.+||-+| +|. |..+..+++.  +.+++.++.++..++.+++    .|..  .++..+-..+....+.|
T Consensus        13 ~~~~~~~~~~~~vLDiG-cG~-G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~f   88 (239)
T 1xxl_A           13 MIKTAECRAEHRVLDIG-AGA-GHTALAFSPY--VQECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDDSF   88 (239)
T ss_dssp             HHHHHTCCTTCEEEEES-CTT-SHHHHHHGGG--SSEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTTCE
T ss_pred             HHHHhCcCCCCEEEEEc-cCc-CHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEecccccCCCCCCcE
Confidence            34567889999999998 554 8888888864  5689999998887776653    3432  22222222222123579


Q ss_pred             cEEEecCc---------cHHHHHHhcccCCeEEEEc
Q 016265          298 DVVYDAIG---------QCDRAVKAIKEGGTVVALT  324 (392)
Q Consensus       298 D~vid~~G---------~~~~~~~~l~~~G~iv~~g  324 (392)
                      |+|+....         .+..+.++|+|||+++...
T Consensus        89 D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~  124 (239)
T 1xxl_A           89 DIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVD  124 (239)
T ss_dssp             EEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEEEECCchhhccCHHHHHHHHHHHcCCCcEEEEEE
Confidence            99996632         1478888999999998764

>2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix}

Probab=96.15  E-value=0.017  Score=51.92  Aligned_cols=42  Identities=26%  Similarity=0.266  Sum_probs=34.7

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHH
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFL  274 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~  274 (392)
                      .|.++||+||+|++|...+..+.. .|++|+++++++++.+.+
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~-~G~~V~~~~r~~~~~~~~   47 (260)
T 2z1n_A            6 QGKLAVVTAGSSGLGFASALELAR-NGARLLLFSRNREKLEAA   47 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHH-CCCEEEEEeCCHHHHHHH
Confidence            468999999999999998877666 499999999887765543

>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0

Probab=96.15  E-value=0.011  Score=52.47  Aligned_cols=72  Identities=17%  Similarity=0.185  Sum_probs=48.6

Q ss_pred             CCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHH-hcCCc-EEE--eCCCCc-ccc-------CCCCccEE
Q 016265          233 GKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLK-SLGAD-LAI--DYTKDN-FED-------LPEKFDVV  300 (392)
Q Consensus       233 g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~-~~G~~-~vi--~~~~~~-~~~-------~~~~~D~v  300 (392)
                      +.++||+||+|++|.+.+..+.. .|++|+++++++++++.+. +++.. ..+  |..+.. +.+       ..+++|++
T Consensus         3 ~k~vlVTGas~GIG~a~a~~l~~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~id~l   81 (235)
T 3l6e_A            3 LGHIIVTGAGSGLGRALTIGLVE-RGHQVSMMGRRYQRLQQQELLLGNAVIGIVADLAHHEDVDVAFAAAVEWGGLPELV   81 (235)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHGGGEEEEECCTTSHHHHHHHHHHHHHHHCSCSEE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHH-CCCEEEEEECCHHHHHHHHHHhcCCceEEECCCCCHHHHHHHHHHHHHhcCCCcEE
Confidence            57899999999999998776656 4999999999888776553 33322 122  322211 111       12478999


Q ss_pred             EecCc
Q 016265          301 YDAIG  305 (392)
Q Consensus       301 id~~G  305 (392)
                      |++.|
T Consensus        82 vnnAg   86 (235)
T 3l6e_A           82 LHCAG   86 (235)
T ss_dssp             EEECC
T ss_pred             EECCC
Confidence            99877

>2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA, nation project on protein structural and functional analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB: 1x1e_A* 2ekq_A

Probab=96.14  E-value=0.015  Score=51.68  Aligned_cols=70  Identities=26%  Similarity=0.302  Sum_probs=47.7

Q ss_pred             CCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcE-EEeCCCCccccC-------CCCccEEEecC
Q 016265          233 GKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADL-AIDYTKDNFEDL-------PEKFDVVYDAI  304 (392)
Q Consensus       233 g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~-vi~~~~~~~~~~-------~~~~D~vid~~  304 (392)
                      +.+++|+||+|++|.+.++.+.. .|++|+++++++++  ..+++|... ..|..+++..+.       -+++|++|++.
T Consensus         2 ~k~vlVTGas~giG~~~a~~l~~-~G~~V~~~~r~~~~--~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~g~id~lv~~A   78 (239)
T 2ekp_A            2 ERKALVTGGSRGIGRAIAEALVA-RGYRVAIASRNPEE--AAQSLGAVPLPTDLEKDDPKGLVKRALEALGGLHVLVHAA   78 (239)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHH-TTCEEEEEESSCHH--HHHHHTCEEEECCTTTSCHHHHHHHHHHHHTSCCEEEECC
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHH-CCCEEEEEeCCHHH--HHHhhCcEEEecCCchHHHHHHHHHHHHHcCCCCEEEECC
Confidence            57899999999999998887766 49999999987765  334455322 123333222211       24789999987


Q ss_pred             c
Q 016265          305 G  305 (392)
Q Consensus       305 G  305 (392)
                      |
T Consensus        79 g   79 (239)
T 2ekp_A           79 A   79 (239)
T ss_dssp             C
T ss_pred             C
Confidence            6

>2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A*

Probab=96.14  E-value=0.015  Score=52.01  Aligned_cols=73  Identities=19%  Similarity=0.337  Sum_probs=49.5

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCc-ccHH-HHHhcCCcE-EE--eCCCCc-cccC-------CCCcc
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSST-RNLE-FLKSLGADL-AI--DYTKDN-FEDL-------PEKFD  298 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~-~~~~-~~~~~G~~~-vi--~~~~~~-~~~~-------~~~~D  298 (392)
                      .|+++||+||+|++|...+..+.. .|++|+++++++ ++++ .+++.|... .+  |..+.. +.+.       -+++|
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id   84 (249)
T 2ew8_A            6 KDKLAVITGGANGIGRAIAERFAV-EGADIAIADLVPAPEAEAAIRNLGRRVLTVKCDVSQPGDVEAFGKQVISTFGRCD   84 (249)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHH-TTCEEEEEESSCCHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSCCC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHH-CCCEEEEEcCCchhHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHHHHHHcCCCC
Confidence            478999999999999998877666 499999998876 5544 345556432 22  332221 1111       24789


Q ss_pred             EEEecCc
Q 016265          299 VVYDAIG  305 (392)
Q Consensus       299 ~vid~~G  305 (392)
                      ++|++.|
T Consensus        85 ~lv~nAg   91 (249)
T 2ew8_A           85 ILVNNAG   91 (249)
T ss_dssp             EEEECCC
T ss_pred             EEEECCC
Confidence            9999876

>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*

Probab=96.12  E-value=0.013  Score=52.75  Aligned_cols=73  Identities=23%  Similarity=0.280  Sum_probs=50.0

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHH-HhcCCcE-EE--eCCCC-ccccC-------CCCccE
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFL-KSLGADL-AI--DYTKD-NFEDL-------PEKFDV  299 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~-~~~G~~~-vi--~~~~~-~~~~~-------~~~~D~  299 (392)
                      .+.+|+|+||+|++|...++.+.. .|++|++++++.++.+.+ ++++... ++  |..+. .+.+.       .+++|+
T Consensus        11 ~~k~vlVTGasggiG~~~a~~l~~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~id~   89 (265)
T 2o23_A           11 KGLVAVITGGASGLGLATAERLVG-QGASAVLLDLPNSGGEAQAKKLGNNCVFAPADVTSEKDVQTALALAKGKFGRVDV   89 (265)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHH-TTCEEEEEECTTSSHHHHHHHHCTTEEEEECCTTCHHHHHHHHHHHHHHHSCCCE
T ss_pred             CCCEEEEECCCChHHHHHHHHHHH-CCCEEEEEeCCcHhHHHHHHHhCCceEEEEcCCCCHHHHHHHHHHHHHHCCCCCE
Confidence            478999999999999998887766 499999999887776554 4455332 22  32221 11111       137899


Q ss_pred             EEecCc
Q 016265          300 VYDAIG  305 (392)
Q Consensus       300 vid~~G  305 (392)
                      +|++.|
T Consensus        90 li~~Ag   95 (265)
T 2o23_A           90 AVNCAG   95 (265)
T ss_dssp             EEECCC
T ss_pred             EEECCc
Confidence            999875

>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa}

Probab=96.11  E-value=0.014  Score=53.22  Aligned_cols=73  Identities=26%  Similarity=0.384  Sum_probs=48.3

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHH-Hhc---CCcEEE--eCCCCc-ccc-------CCCCc
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFL-KSL---GADLAI--DYTKDN-FED-------LPEKF  297 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~-~~~---G~~~vi--~~~~~~-~~~-------~~~~~  297 (392)
                      .|+++||+||+|++|.+.++.+.. .|++|+++++++++++.+ +++   |.-..+  |..+.. +.+       ..+++
T Consensus        28 ~~k~vlVTGas~gIG~aia~~L~~-~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i  106 (276)
T 2b4q_A           28 AGRIALVTGGSRGIGQMIAQGLLE-AGARVFICARDAEACADTATRLSAYGDCQAIPADLSSEAGARRLAQALGELSARL  106 (276)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHH-TTCEEEEECSCHHHHHHHHHHHTTSSCEEECCCCTTSHHHHHHHHHHHHHHCSCC
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHHHHhcCceEEEEeeCCCHHHHHHHHHHHHHhcCCC
Confidence            478999999999999998877766 499999999887766543 232   311112  222211 111       12479


Q ss_pred             cEEEecCc
Q 016265          298 DVVYDAIG  305 (392)
Q Consensus       298 D~vid~~G  305 (392)
                      |++|++.|
T Consensus       107 D~lvnnAg  114 (276)
T 2b4q_A          107 DILVNNAG  114 (276)
T ss_dssp             SEEEECCC
T ss_pred             CEEEECCC
Confidence            99999876

>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A

Probab=96.11  E-value=0.02  Score=53.24  Aligned_cols=74  Identities=20%  Similarity=0.200  Sum_probs=51.0

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhc-----C--CcEE--EeCCC-CccccCCCCccEE
Q 016265          231 SAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSL-----G--ADLA--IDYTK-DNFEDLPEKFDVV  300 (392)
Q Consensus       231 ~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~-----G--~~~v--i~~~~-~~~~~~~~~~D~v  300 (392)
                      ..+.+|||+||+|.+|...+..+.. .|.+|++++++..+.+.+.+.     +  ...+  .|..+ +.+.+..+++|+|
T Consensus         9 ~~~~~vlVTGatG~iG~~l~~~L~~-~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~v   87 (342)
T 1y1p_A            9 PEGSLVLVTGANGFVASHVVEQLLE-HGYKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIKGAAGV   87 (342)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHH-TTCEEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTTTTTCSEE
T ss_pred             CCCCEEEEECCccHHHHHHHHHHHH-CCCEEEEEeCCcccHHHHHHHhhccCCCceEEEEecCCcChHHHHHHHcCCCEE
Confidence            4578999999999999998887766 499999999887765544321     2  2222  23322 2234444589999


Q ss_pred             EecCc
Q 016265          301 YDAIG  305 (392)
Q Consensus       301 id~~G  305 (392)
                      |.+.|
T Consensus        88 ih~A~   92 (342)
T 1y1p_A           88 AHIAS   92 (342)
T ss_dssp             EECCC
T ss_pred             EEeCC
Confidence            99976

>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2

Probab=96.11  E-value=0.017  Score=51.39  Aligned_cols=73  Identities=22%  Similarity=0.263  Sum_probs=49.5

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHH----HhcCCcE-EE--eCCCCc-cc-------cCCCC
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFL----KSLGADL-AI--DYTKDN-FE-------DLPEK  296 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~----~~~G~~~-vi--~~~~~~-~~-------~~~~~  296 (392)
                      .+.+++|+||+|++|...++.... .|++|+++++++++.+.+    ++.|... .+  |..+.. +.       +..++
T Consensus         4 ~~k~vlITGas~gIG~~~a~~l~~-~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   82 (247)
T 3lyl_A            4 NEKVALVTGASRGIGFEVAHALAS-KGATVVGTATSQASAEKFENSMKEKGFKARGLVLNISDIESIQNFFAEIKAENLA   82 (247)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHH-TTCEEEEEESSHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHTTCC
T ss_pred             CCCEEEEECCCChHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence            468999999999999987777666 499999999988766544    3345432 22  322211 11       11346


Q ss_pred             ccEEEecCc
Q 016265          297 FDVVYDAIG  305 (392)
Q Consensus       297 ~D~vid~~G  305 (392)
                      +|++|++.|
T Consensus        83 id~li~~Ag   91 (247)
T 3lyl_A           83 IDILVNNAG   91 (247)
T ss_dssp             CSEEEECCC
T ss_pred             CCEEEECCC
Confidence            899999977

>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A*

Probab=96.11  E-value=0.014  Score=52.63  Aligned_cols=73  Identities=25%  Similarity=0.388  Sum_probs=49.2

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHH----HhcCCcE-EE--eCCCCc-cccC-------C-C
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFL----KSLGADL-AI--DYTKDN-FEDL-------P-E  295 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~----~~~G~~~-vi--~~~~~~-~~~~-------~-~  295 (392)
                      .|.++||+||+|++|.+.++.+.. .|++|+++++++++++.+    ++.|... .+  |..+.. +.+.       - +
T Consensus         8 ~~k~vlVTGas~giG~~ia~~l~~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~g   86 (260)
T 2ae2_A            8 EGCTALVTGGSRGIGYGIVEELAS-LGASVYTCSRNQKELNDCLTQWRSKGFKVEASVCDLSSRSERQELMNTVANHFHG   86 (260)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHTTT
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            478999999999999998877666 499999999887765543    2234332 22  333221 1111       1 5


Q ss_pred             CccEEEecCc
Q 016265          296 KFDVVYDAIG  305 (392)
Q Consensus       296 ~~D~vid~~G  305 (392)
                      ++|++|++.|
T Consensus        87 ~id~lv~~Ag   96 (260)
T 2ae2_A           87 KLNILVNNAG   96 (260)
T ss_dssp             CCCEEEECCC
T ss_pred             CCCEEEECCC
Confidence            7999999876

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=96.11  E-value=0.021  Score=50.45  Aligned_cols=96  Identities=21%  Similarity=0.233  Sum_probs=64.7

Q ss_pred             HHhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcC-CeEEEEeCCcccHHHHHhcCC--c--EEEeCCCCcc---ccCCCC
Q 016265          225 LERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFG-ASRVAATSSTRNLEFLKSLGA--D--LAIDYTKDNF---EDLPEK  296 (392)
Q Consensus       225 l~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G-~~vv~~~~~~~~~~~~~~~G~--~--~vi~~~~~~~---~~~~~~  296 (392)
                      ++...++++++||-+| +|. |..+..+++.. | .+++.++.+++.++.+++.-.  +  ..+..+....   ....+.
T Consensus        67 l~~~~~~~~~~VLDlG-cG~-G~~~~~la~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~~  143 (230)
T 1fbn_A           67 LKVMPIKRDSKILYLG-ASA-GTTPSHVADIA-DKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIVEK  143 (230)
T ss_dssp             CCCCCCCTTCEEEEES-CCS-SHHHHHHHHHT-TTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTSCC
T ss_pred             ccccCCCCCCEEEEEc-ccC-CHHHHHHHHHc-CCcEEEEEECCHHHHHHHHHHhhcCCCeEEEECCCCCcccccccCcc
Confidence            4445678899999998 665 99999999874 5 688899999888777754321  1  1122111111   112257


Q ss_pred             ccEEEecCc-c------HHHHHHhcccCCeEEEE
Q 016265          297 FDVVYDAIG-Q------CDRAVKAIKEGGTVVAL  323 (392)
Q Consensus       297 ~D~vid~~G-~------~~~~~~~l~~~G~iv~~  323 (392)
                      +|+|+.... .      +..+.+.|+|||+++..
T Consensus       144 ~D~v~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~  177 (230)
T 1fbn_A          144 VDVIYEDVAQPNQAEILIKNAKWFLKKGGYGMIA  177 (230)
T ss_dssp             EEEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             EEEEEEecCChhHHHHHHHHHHHhCCCCcEEEEE
Confidence            999996543 1      46788899999999875

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=96.10  E-value=0.039  Score=50.51  Aligned_cols=93  Identities=12%  Similarity=0.073  Sum_probs=64.4

Q ss_pred             CCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHh----cCCc---EEEeCCCCccccCCCCccEEE
Q 016265          229 GFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKS----LGAD---LAIDYTKDNFEDLPEKFDVVY  301 (392)
Q Consensus       229 ~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~----~G~~---~vi~~~~~~~~~~~~~~D~vi  301 (392)
                      .+.++.+||-+| +| .|..+..+++.. |++++.++.++..++.+++    .|..   .++..+-.......+.||+|+
T Consensus        79 ~~~~~~~vLDiG-cG-~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~  155 (297)
T 2o57_A           79 VLQRQAKGLDLG-AG-YGGAARFLVRKF-GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCEDNSYDFIW  155 (297)
T ss_dssp             CCCTTCEEEEET-CT-TSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSCTTCEEEEE
T ss_pred             CCCCCCEEEEeC-CC-CCHHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccCCCCCCCEeEEE
Confidence            788999999997 54 688889999874 8999999999887776654    3432   222221111111134699998


Q ss_pred             ecCc---------cHHHHHHhcccCCeEEEEc
Q 016265          302 DAIG---------QCDRAVKAIKEGGTVVALT  324 (392)
Q Consensus       302 d~~G---------~~~~~~~~l~~~G~iv~~g  324 (392)
                      ..-.         .+..+.++|+|||+++...
T Consensus       156 ~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~  187 (297)
T 2o57_A          156 SQDAFLHSPDKLKVFQECARVLKPRGVMAITD  187 (297)
T ss_dssp             EESCGGGCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ecchhhhcCCHHHHHHHHHHHcCCCeEEEEEE
Confidence            6532         1578889999999998763

>3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis}

Probab=96.08  E-value=0.013  Score=53.46  Aligned_cols=73  Identities=25%  Similarity=0.328  Sum_probs=50.1

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHH-hcCCcE-EE--eCCCCc-cccC-------CCCccE
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLK-SLGADL-AI--DYTKDN-FEDL-------PEKFDV  299 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~-~~G~~~-vi--~~~~~~-~~~~-------~~~~D~  299 (392)
                      .+.+|||+||+|++|...++.+.. .|++|++++++.++++.+. +++... .+  |..+.. +.+.       .+++|+
T Consensus         4 ~~k~vlVTGas~gIG~~~a~~l~~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~id~   82 (281)
T 3m1a_A            4 SAKVWLVTGASSGFGRAIAEAAVA-AGDTVIGTARRTEALDDLVAAYPDRAEAISLDVTDGERIDVVAADVLARYGRVDV   82 (281)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHH-TTCEEEEEESSGGGGHHHHHHCTTTEEEEECCTTCHHHHHHHHHHHHHHHSCCSE
T ss_pred             CCcEEEEECCCChHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHhccCCceEEEeeCCCHHHHHHHHHHHHHhCCCCCE
Confidence            468999999999999998877766 4999999999888766553 444322 22  322211 1111       237899


Q ss_pred             EEecCc
Q 016265          300 VYDAIG  305 (392)
Q Consensus       300 vid~~G  305 (392)
                      +|++.|
T Consensus        83 lv~~Ag   88 (281)
T 3m1a_A           83 LVNNAG   88 (281)
T ss_dssp             EEECCC
T ss_pred             EEECCC
Confidence            999877

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=96.08  E-value=0.018  Score=50.46  Aligned_cols=91  Identities=13%  Similarity=0.176  Sum_probs=62.0

Q ss_pred             CCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCc-----------EEEeCCCCccccCCCCcc
Q 016265          230 FSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGAD-----------LAIDYTKDNFEDLPEKFD  298 (392)
Q Consensus       230 ~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~-----------~vi~~~~~~~~~~~~~~D  298 (392)
                      ++++++||-+| +| .|..+..+++.  |.+++.++.++..++.+++....           .++..+-.......+.+|
T Consensus        28 ~~~~~~vLdiG-~G-~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D  103 (235)
T 3sm3_A           28 LQEDDEILDIG-CG-SGKISLELASK--GYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFD  103 (235)
T ss_dssp             CCTTCEEEEET-CT-TSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSCTTCEE
T ss_pred             CCCCCeEEEEC-CC-CCHHHHHHHhC--CCeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCCCCCcee
Confidence            56889999997 55 48888888874  88999999999888888763221           122222122221235799


Q ss_pred             EEEecCc------------cHHHHHHhcccCCeEEEEc
Q 016265          299 VVYDAIG------------QCDRAVKAIKEGGTVVALT  324 (392)
Q Consensus       299 ~vid~~G------------~~~~~~~~l~~~G~iv~~g  324 (392)
                      +|+-...            .++.+.+.|++||+++...
T Consensus       104 ~v~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~  141 (235)
T 3sm3_A          104 FAVMQAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVE  141 (235)
T ss_dssp             EEEEESCGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEEEcchhhcCCCHHHHHHHHHHHHHHcCCCeEEEEEE
Confidence            9985421            1467788999999998764

>1zmo_A Halohydrin dehalogenase; haloalcohol dehalogenase, short- chain dehydrogenase/reductase family, lyase; 2.00A {Arthrobacter SP}

Probab=96.07  E-value=0.0072  Score=53.98  Aligned_cols=71  Identities=15%  Similarity=0.092  Sum_probs=47.1

Q ss_pred             CCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEE-e--CCcccHHHHH-hc-CCcEEEeCCCCc--cc---cCCCCccEEEe
Q 016265          233 GKSILVLNGSGGVGSLVIQLAKQVFGASRVAA-T--SSTRNLEFLK-SL-GADLAIDYTKDN--FE---DLPEKFDVVYD  302 (392)
Q Consensus       233 g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~-~--~~~~~~~~~~-~~-G~~~vi~~~~~~--~~---~~~~~~D~vid  302 (392)
                      |+++||+||+|++|.+.++.+.. .|++|+++ .  +++++++.+. ++ |.+ +.|.....  +.   +.-+++|++|+
T Consensus         1 ~k~vlVTGas~gIG~~ia~~l~~-~G~~V~~~~~~~r~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~g~iD~lv~   78 (244)
T 1zmo_A            1 MVIALVTHARHFAGPAAVEALTQ-DGYTVVCHDASFADAAERQRFESENPGTI-ALAEQKPERLVDATLQHGEAIDTIVS   78 (244)
T ss_dssp             -CEEEESSTTSTTHHHHHHHHHH-TTCEEEECCGGGGSHHHHHHHHHHSTTEE-ECCCCCGGGHHHHHGGGSSCEEEEEE
T ss_pred             CCEEEEECCCChHHHHHHHHHHH-CCCEEEEecCCcCCHHHHHHHHHHhCCCc-ccCHHHHHHHHHHHHHHcCCCCEEEE
Confidence            46899999999999998887766 49999988 5  8777766543 44 432 22322211  11   11247899999


Q ss_pred             cCc
Q 016265          303 AIG  305 (392)
Q Consensus       303 ~~G  305 (392)
                      +.|
T Consensus        79 ~Ag   81 (244)
T 1zmo_A           79 NDY   81 (244)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            875

>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2

Probab=96.07  E-value=0.02  Score=51.59  Aligned_cols=75  Identities=21%  Similarity=0.285  Sum_probs=49.0

Q ss_pred             CCCCCeEEEEcCC--CcHHHHHHHHHHHhcCCeEEEEeCCcccHHHH----HhcCCcEEE--eCCCCc-ccc-------C
Q 016265          230 FSAGKSILVLNGS--GGVGSLVIQLAKQVFGASRVAATSSTRNLEFL----KSLGADLAI--DYTKDN-FED-------L  293 (392)
Q Consensus       230 ~~~g~~VlI~Ga~--G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~----~~~G~~~vi--~~~~~~-~~~-------~  293 (392)
                      ...+++|||+||+  |++|...++.+.. .|++|+++++++...+.+    ++.+...++  |..+.. +.+       .
T Consensus        11 ~~~~k~vlITGa~~~~giG~~ia~~l~~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   89 (271)
T 3ek2_A           11 FLDGKRILLTGLLSNRSIAYGIAKACKR-EGAELAFTYVGDRFKDRITEFAAEFGSELVFPCDVADDAQIDALFASLKTH   89 (271)
T ss_dssp             TTTTCEEEECCCCSTTSHHHHHHHHHHH-TTCEEEEEESSGGGHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHHH
T ss_pred             ccCCCEEEEeCCCCCCcHHHHHHHHHHH-cCCCEEEEecchhhHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHHHHH
Confidence            4568999999998  9999987776666 499999998875544433    334433333  322221 111       1


Q ss_pred             CCCccEEEecCc
Q 016265          294 PEKFDVVYDAIG  305 (392)
Q Consensus       294 ~~~~D~vid~~G  305 (392)
                      .+++|++|++.|
T Consensus        90 ~g~id~lv~nAg  101 (271)
T 3ek2_A           90 WDSLDGLVHSIG  101 (271)
T ss_dssp             CSCEEEEEECCC
T ss_pred             cCCCCEEEECCc
Confidence            247899999875

>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2

Probab=96.07  E-value=0.02  Score=51.39  Aligned_cols=72  Identities=19%  Similarity=0.244  Sum_probs=48.3

Q ss_pred             CCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHH----HhcCCcE-EE--eCCCCc-ccc-------CCCCc
Q 016265          233 GKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFL----KSLGADL-AI--DYTKDN-FED-------LPEKF  297 (392)
Q Consensus       233 g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~----~~~G~~~-vi--~~~~~~-~~~-------~~~~~  297 (392)
                      +.++||+||+|++|...++.+.. .|++|+++++++++.+.+    ++.|... .+  |..+.. +.+       .-+++
T Consensus         2 ~k~vlVTGas~gIG~~ia~~l~~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~i   80 (256)
T 1geg_A            2 KKVALVTGAGQGIGKAIALRLVK-DGFAVAIADYNDATAKAVASEINQAGGHAVAVKVDVSDRDQVFAAVEQARKTLGGF   80 (256)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHTTCC
T ss_pred             CCEEEEECCCChHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHhCCC
Confidence            56899999999999998877766 499999999887765543    2234322 22  333221 111       12479


Q ss_pred             cEEEecCc
Q 016265          298 DVVYDAIG  305 (392)
Q Consensus       298 D~vid~~G  305 (392)
                      |++|++.|
T Consensus        81 d~lv~nAg   88 (256)
T 1geg_A           81 DVIVNNAG   88 (256)
T ss_dssp             CEEEECCC
T ss_pred             CEEEECCC
Confidence            99999876

>1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2

Probab=96.06  E-value=0.013  Score=52.47  Aligned_cols=70  Identities=24%  Similarity=0.352  Sum_probs=47.8

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEE-eCCCCcccc---CCCCccEEEecCc
Q 016265          231 SAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAI-DYTKDNFED---LPEKFDVVYDAIG  305 (392)
Q Consensus       231 ~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi-~~~~~~~~~---~~~~~D~vid~~G  305 (392)
                      -.|.+|||+||+|++|...++.+.. .|++|++++++++.   +++++...++ |. .++...   ...++|++|++.|
T Consensus        17 ~~~k~vlVTGas~gIG~~~a~~l~~-~G~~V~~~~r~~~~---~~~~~~~~~~~D~-~~~~~~~~~~~~~iD~lv~~Ag   90 (249)
T 1o5i_A           17 IRDKGVLVLAASRGIGRAVADVLSQ-EGAEVTICARNEEL---LKRSGHRYVVCDL-RKDLDLLFEKVKEVDILVLNAG   90 (249)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHH-TTCEEEEEESCHHH---HHHTCSEEEECCT-TTCHHHHHHHSCCCSEEEECCC
T ss_pred             cCCCEEEEECCCCHHHHHHHHHHHH-CCCEEEEEcCCHHH---HHhhCCeEEEeeH-HHHHHHHHHHhcCCCEEEECCC
Confidence            4688999999999999998877766 49999999887633   3444522222 32 122221   1237999999876

>3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens}

Probab=96.06  E-value=0.019  Score=51.73  Aligned_cols=73  Identities=23%  Similarity=0.374  Sum_probs=49.3

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHH-hcCCc-EEE--eCCCCc-cccC-------CCCccE
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLK-SLGAD-LAI--DYTKDN-FEDL-------PEKFDV  299 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~-~~G~~-~vi--~~~~~~-~~~~-------~~~~D~  299 (392)
                      .|.++||+||+|++|...+..+.. .|++|+++++++++.+.+. ++... ..+  |..+.. +.+.       .+++|+
T Consensus        11 ~~k~vlVTGas~gIG~~ia~~l~~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~d~~~v~~~~~~~~~~~g~iD~   89 (263)
T 3ak4_A           11 SGRKAIVTGGSKGIGAAIARALDK-AGATVAIADLDVMAAQAVVAGLENGGFAVEVDVTKRASVDAAMQKAIDALGGFDL   89 (263)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHTCTTCCEEEECCTTCHHHHHHHHHHHHHHHTCCCE
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHHHhcCCeEEEEeCCCHHHHHHHHHHHHHHcCCCCE
Confidence            478999999999999998877666 4999999999887766553 33221 222  332211 1111       137899


Q ss_pred             EEecCc
Q 016265          300 VYDAIG  305 (392)
Q Consensus       300 vid~~G  305 (392)
                      +|++.|
T Consensus        90 lv~~Ag   95 (263)
T 3ak4_A           90 LCANAG   95 (263)
T ss_dssp             EEECCC
T ss_pred             EEECCC
Confidence            999876

>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*

Probab=96.06  E-value=0.017  Score=52.32  Aligned_cols=73  Identities=16%  Similarity=0.203  Sum_probs=49.0

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHH----h-cCCc--EEE--eCCCCc-ccc-------CC
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLK----S-LGAD--LAI--DYTKDN-FED-------LP  294 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~----~-~G~~--~vi--~~~~~~-~~~-------~~  294 (392)
                      .|+++||+||++++|.+.++.... .|++|++++++.++++.+.    + .+..  ..+  |..+.. ..+       .-
T Consensus         7 ~~k~~lVTGas~GIG~aia~~l~~-~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   85 (265)
T 3lf2_A            7 SEAVAVVTGGSSGIGLATVELLLE-AGAAVAFCARDGERLRAAESALRQRFPGARLFASVCDVLDALQVRAFAEACERTL   85 (265)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCCCCCHHHHHHHHHHHHHHc
Confidence            478999999999999998777666 4999999999887765442    2 3332  222  332221 111       12


Q ss_pred             CCccEEEecCc
Q 016265          295 EKFDVVYDAIG  305 (392)
Q Consensus       295 ~~~D~vid~~G  305 (392)
                      +++|++|++.|
T Consensus        86 g~id~lvnnAg   96 (265)
T 3lf2_A           86 GCASILVNNAG   96 (265)
T ss_dssp             CSCSEEEECCC
T ss_pred             CCCCEEEECCC
Confidence            47899999987

>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1}

Probab=96.05  E-value=0.079  Score=49.71  Aligned_cols=136  Identities=16%  Similarity=0.230  Sum_probs=80.6

Q ss_pred             CeEEEEcCCCcHHHHHHHHHH-HhcCCeEEEE-eCCcccHHH-HHhcCCcEEEeCCCCccccC--CCCccEEEecCc---
Q 016265          234 KSILVLNGSGGVGSLVIQLAK-QVFGASRVAA-TSSTRNLEF-LKSLGADLAIDYTKDNFEDL--PEKFDVVYDAIG---  305 (392)
Q Consensus       234 ~~VlI~Ga~G~vG~~aiqlak-~~~G~~vv~~-~~~~~~~~~-~~~~G~~~vi~~~~~~~~~~--~~~~D~vid~~G---  305 (392)
                      -+|.|+| +|.+|...++.++ ...+.+++++ ++++++.+. ++++|...+++    ++.++  ..++|+|+.|+.   
T Consensus         9 ~~v~iiG-~G~ig~~~~~~l~~~~~~~~~vav~d~~~~~~~~~a~~~g~~~~~~----~~~~~l~~~~~D~V~i~tp~~~   83 (346)
T 3cea_A            9 LRAAIIG-LGRLGERHARHLVNKIQGVKLVAACALDSNQLEWAKNELGVETTYT----NYKDMIDTENIDAIFIVAPTPF   83 (346)
T ss_dssp             EEEEEEC-CSTTHHHHHHHHHHTCSSEEEEEEECSCHHHHHHHHHTTCCSEEES----CHHHHHTTSCCSEEEECSCGGG
T ss_pred             ceEEEEc-CCHHHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHHhCCCcccC----CHHHHhcCCCCCEEEEeCChHh
Confidence            4799998 8999998877766 4336676644 567777654 46678755543    23332  237999999987   


Q ss_pred             cHHHHHHhcccCCeEEEEcCCCCCCceEEEEeecHHHHHHHHHHHHCC-CcccccCCCcccchh-hHHHHHHHHHhCCCC
Q 016265          306 QCDRAVKAIKEGGTVVALTGAVTPPGFRFVVTSNGEVLKKLNPYLESG-KVKPIIDPKGPFPFS-QVVEAFSYIETNKAT  383 (392)
Q Consensus       306 ~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~g-~l~~~~~~t~~~~l~-~~~~A~~~l~~~~~~  383 (392)
                      ..+.+.++++.| +-|.+..+.   .      ...+..+++.++.++. .+.....  ..+.+. .+..+.+.+.++. .
T Consensus        84 h~~~~~~al~~G-~~v~~eKp~---~------~~~~~~~~l~~~a~~~~~~~~~~~--~~~r~~p~~~~~~~~i~~g~-i  150 (346)
T 3cea_A           84 HPEMTIYAMNAG-LNVFCEKPL---G------LDFNEVDEMAKVIKSHPNQIFQSG--FMRRYDDSYRYAKKIVDNGD-I  150 (346)
T ss_dssp             HHHHHHHHHHTT-CEEEECSCC---C------SCHHHHHHHHHHHHTCTTSCEECC--CGGGTCHHHHHHHHHHHTTT-T
T ss_pred             HHHHHHHHHHCC-CEEEEcCCC---C------CCHHHHHHHHHHHHhCCCCeEEEe--cccccCHHHHHHHHHHHcCC-C
Confidence            347777788775 544443211   1      2345566677777665 5443321  223332 3555555555543 4


Q ss_pred             eeEE
Q 016265          384 GKVV  387 (392)
Q Consensus       384 gKvv  387 (392)
                      |++.
T Consensus       151 G~i~  154 (346)
T 3cea_A          151 GKII  154 (346)
T ss_dssp             CSEE
T ss_pred             CCeE
Confidence            6653

>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus}

Probab=96.05  E-value=0.016  Score=52.03  Aligned_cols=73  Identities=22%  Similarity=0.319  Sum_probs=50.3

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHH-hcCCcE-EE--eCCCCc-cccC-------CCCccE
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLK-SLGADL-AI--DYTKDN-FEDL-------PEKFDV  299 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~-~~G~~~-vi--~~~~~~-~~~~-------~~~~D~  299 (392)
                      .|.++||+||+|++|.+.++.+.. .|++|+++++++++++.+. +++... .+  |..+.. +.+.       ..++|+
T Consensus         8 ~~k~vlITGas~gIG~~~a~~l~~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~   86 (261)
T 3n74_A            8 EGKVALITGAGSGFGEGMAKRFAK-GGAKVVIVDRDKAGAERVAGEIGDAALAVAADISKEADVDAAVEAALSKFGKVDI   86 (261)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHCTTEEEEECCTTSHHHHHHHHHHHHHHHSCCCE
T ss_pred             CCCEEEEECCCchHHHHHHHHHHH-CCCEEEEEcCCHHHHHHHHHHhCCceEEEEecCCCHHHHHHHHHHHHHhcCCCCE
Confidence            478999999999999987777666 4999999999888776553 555432 22  222211 1111       236899


Q ss_pred             EEecCc
Q 016265          300 VYDAIG  305 (392)
Q Consensus       300 vid~~G  305 (392)
                      +|++.|
T Consensus        87 li~~Ag   92 (261)
T 3n74_A           87 LVNNAG   92 (261)
T ss_dssp             EEECCC
T ss_pred             EEECCc
Confidence            999876

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=96.04  E-value=0.021  Score=48.19  Aligned_cols=114  Identities=11%  Similarity=0.042  Sum_probs=74.2

Q ss_pred             HHhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHh----cCC-c--EEEeCCCCccccCCCCc
Q 016265          225 LERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKS----LGA-D--LAIDYTKDNFEDLPEKF  297 (392)
Q Consensus       225 l~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~----~G~-~--~vi~~~~~~~~~~~~~~  297 (392)
                      +....+.++++||-+| +|. |..+..+++.  +.+++.++.++...+.+++    .|. +  .++..+-.........+
T Consensus        26 ~~~~~~~~~~~vldiG-~G~-G~~~~~l~~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  101 (192)
T 1l3i_A           26 MCLAEPGKNDVAVDVG-CGT-GGVTLELAGR--VRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKIPDI  101 (192)
T ss_dssp             HHHHCCCTTCEEEEES-CTT-SHHHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTSCCE
T ss_pred             HHhcCCCCCCEEEEEC-CCC-CHHHHHHHHh--cCEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHHhcccCCCC
Confidence            3456788999999998 666 8899988875  4788999999888777754    443 1  12222111111111479


Q ss_pred             cEEEecCc--c----HHHHHHhcccCCeEEEEcCCCCCCceEEEEeecHHHHHHHHHHHHCCCc
Q 016265          298 DVVYDAIG--Q----CDRAVKAIKEGGTVVALTGAVTPPGFRFVVTSNGEVLKKLNPYLESGKV  355 (392)
Q Consensus       298 D~vid~~G--~----~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~l  355 (392)
                      |+|+....  .    ++.+.++|++||+++...             .......++.+++++..+
T Consensus       102 D~v~~~~~~~~~~~~l~~~~~~l~~gG~l~~~~-------------~~~~~~~~~~~~l~~~g~  152 (192)
T 1l3i_A          102 DIAVVGGSGGELQEILRIIKDKLKPGGRIIVTA-------------ILLETKFEAMECLRDLGF  152 (192)
T ss_dssp             EEEEESCCTTCHHHHHHHHHHTEEEEEEEEEEE-------------CBHHHHHHHHHHHHHTTC
T ss_pred             CEEEECCchHHHHHHHHHHHHhcCCCcEEEEEe-------------cCcchHHHHHHHHHHCCC
Confidence            99996532  2    477888999999987652             234455666666665444

>2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus}

Probab=96.04  E-value=0.013  Score=51.78  Aligned_cols=72  Identities=17%  Similarity=0.287  Sum_probs=48.8

Q ss_pred             CCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHH-hcCCcEEE--eCCCCc-cccC-------CCCccEEE
Q 016265          233 GKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLK-SLGADLAI--DYTKDN-FEDL-------PEKFDVVY  301 (392)
Q Consensus       233 g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~-~~G~~~vi--~~~~~~-~~~~-------~~~~D~vi  301 (392)
                      +.+|+|+||+|++|...+..+.. .|++|++++++.++++.+. +++....+  |..+.. +.+.       .+++|++|
T Consensus         5 ~k~vlVtGasggiG~~~a~~l~~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~li   83 (234)
T 2ehd_A            5 KGAVLITGASRGIGEATARLLHA-KGYRVGLMARDEKRLQALAAELEGALPLPGDVREEGDWARAVAAMEEAFGELSALV   83 (234)
T ss_dssp             CCEEEESSTTSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHHSTTCEEEECCTTCHHHHHHHHHHHHHHHSCCCEEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHH-CCCEEEEEECCHHHHHHHHHHhhhceEEEecCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence            57899999999999998887766 4999999999877766543 34322233  322211 1111       13789999


Q ss_pred             ecCc
Q 016265          302 DAIG  305 (392)
Q Consensus       302 d~~G  305 (392)
                      ++.|
T Consensus        84 ~~Ag   87 (234)
T 2ehd_A           84 NNAG   87 (234)
T ss_dssp             ECCC
T ss_pred             ECCC
Confidence            9976

>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}

Probab=96.04  E-value=0.017  Score=52.78  Aligned_cols=74  Identities=18%  Similarity=0.254  Sum_probs=48.1

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHH----HhcCCcEE-E--eCCCCc-ccc-------CCC
Q 016265          231 SAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFL----KSLGADLA-I--DYTKDN-FED-------LPE  295 (392)
Q Consensus       231 ~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~----~~~G~~~v-i--~~~~~~-~~~-------~~~  295 (392)
                      ..|+++||+||+|++|.+.+..... .|++|++++++.++.+.+    ++.|.... +  |..+.. +.+       ..+
T Consensus        22 ~~~k~~lVTGas~GIG~aia~~la~-~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g  100 (279)
T 3sju_A           22 SRPQTAFVTGVSSGIGLAVARTLAA-RGIAVYGCARDAKNVSAAVDGLRAAGHDVDGSSCDVTSTDEVHAAVAAAVERFG  100 (279)
T ss_dssp             ---CEEEEESTTSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHHC
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            3578999999999999998776666 499999999988776543    33344322 2  322211 111       124


Q ss_pred             CccEEEecCc
Q 016265          296 KFDVVYDAIG  305 (392)
Q Consensus       296 ~~D~vid~~G  305 (392)
                      ++|++|++.|
T Consensus       101 ~id~lv~nAg  110 (279)
T 3sju_A          101 PIGILVNSAG  110 (279)
T ss_dssp             SCCEEEECCC
T ss_pred             CCcEEEECCC
Confidence            7899999876

>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2

Probab=96.03  E-value=0.023  Score=51.48  Aligned_cols=73  Identities=19%  Similarity=0.289  Sum_probs=49.6

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHH----HhcCCcE-EE--eCCCCc-ccc-------CCCC
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFL----KSLGADL-AI--DYTKDN-FED-------LPEK  296 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~----~~~G~~~-vi--~~~~~~-~~~-------~~~~  296 (392)
                      .+.+|||+||+|++|...+..+.. .|++|+++++++++.+.+    ++.|... ++  |..+.. +.+       ..++
T Consensus        30 ~~k~vlITGasggIG~~la~~L~~-~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~  108 (272)
T 1yb1_A           30 TGEIVLITGAGHGIGRLTAYEFAK-LKSKLVLWDINKHGLEETAAKCKGLGAKVHTFVVDCSNREDIYSSAKKVKAEIGD  108 (272)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTCC
T ss_pred             CCCEEEEECCCchHHHHHHHHHHH-CCCEEEEEEcCHHHHHHHHHHHHhcCCeEEEEEeeCCCHHHHHHHHHHHHHHCCC
Confidence            578999999999999998887766 499999999887765543    2334332 22  322211 111       1247


Q ss_pred             ccEEEecCc
Q 016265          297 FDVVYDAIG  305 (392)
Q Consensus       297 ~D~vid~~G  305 (392)
                      +|++|.+.|
T Consensus       109 iD~li~~Ag  117 (272)
T 1yb1_A          109 VSILVNNAG  117 (272)
T ss_dssp             CSEEEECCC
T ss_pred             CcEEEECCC
Confidence            899999976

>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2

Probab=96.03  E-value=0.018  Score=52.14  Aligned_cols=74  Identities=28%  Similarity=0.340  Sum_probs=49.8

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHH-----HhcCCcE-EE--eCCCCc-cccC-------C
Q 016265          231 SAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFL-----KSLGADL-AI--DYTKDN-FEDL-------P  294 (392)
Q Consensus       231 ~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~-----~~~G~~~-vi--~~~~~~-~~~~-------~  294 (392)
                      -.|+++||+||+|++|.+.++.+.. .|++|++++++.++++.+     ++.|... .+  |..+.. +.+.       -
T Consensus        19 l~~k~~lVTGas~gIG~~ia~~l~~-~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~   97 (267)
T 1vl8_A           19 LRGRVALVTGGSRGLGFGIAQGLAE-AGCSVVVASRNLEEASEAAQKLTEKYGVETMAFRCDVSNYEEVKKLLEAVKEKF   97 (267)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            3578999999999999998877766 499999999887765543     2235432 22  333221 1111       2


Q ss_pred             CCccEEEecCc
Q 016265          295 EKFDVVYDAIG  305 (392)
Q Consensus       295 ~~~D~vid~~G  305 (392)
                      +++|++|++.|
T Consensus        98 g~iD~lvnnAg  108 (267)
T 1vl8_A           98 GKLDTVVNAAG  108 (267)
T ss_dssp             SCCCEEEECCC
T ss_pred             CCCCEEEECCC
Confidence            37899999876

>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti}

Probab=96.03  E-value=0.014  Score=52.44  Aligned_cols=73  Identities=21%  Similarity=0.199  Sum_probs=43.8

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHH-HhcCCc-EEE--eCCCCc-cccC-------CCCccE
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFL-KSLGAD-LAI--DYTKDN-FEDL-------PEKFDV  299 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~-~~~G~~-~vi--~~~~~~-~~~~-------~~~~D~  299 (392)
                      .|.++||+||+|++|.+.++.... .|++|+++++++++.+.+ ++++.. ..+  |..+.. ..+.       -+++|+
T Consensus         6 ~~k~~lVTGas~gIG~aia~~l~~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~   84 (257)
T 3tpc_A            6 KSRVFIVTGASSGLGAAVTRMLAQ-EGATVLGLDLKPPAGEEPAAELGAAVRFRNADVTNEADATAALAFAKQEFGHVHG   84 (257)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHH-TTCEEEEEESSCC------------CEEEECCTTCHHHHHHHHHHHHHHHSCCCE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHH-CCCEEEEEeCChHHHHHHHHHhCCceEEEEccCCCHHHHHHHHHHHHHHcCCCCE
Confidence            578999999999999998776666 499999999887765544 344432 222  222211 1111       237899


Q ss_pred             EEecCc
Q 016265          300 VYDAIG  305 (392)
Q Consensus       300 vid~~G  305 (392)
                      +|++.|
T Consensus        85 lv~nAg   90 (257)
T 3tpc_A           85 LVNCAG   90 (257)
T ss_dssp             EEECCC
T ss_pred             EEECCC
Confidence            999876

>1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide catalysis, enantioselectivity, lyase; HET: RNO; 1.70A {Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A 1px0_A* 1pwx_A* 1zo8_A*

Probab=96.03  E-value=0.0059  Score=54.94  Aligned_cols=70  Identities=14%  Similarity=0.004  Sum_probs=47.2

Q ss_pred             CeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHH---hcCCcEEEeCCCCccccC-------CCCccEEEec
Q 016265          234 KSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLK---SLGADLAIDYTKDNFEDL-------PEKFDVVYDA  303 (392)
Q Consensus       234 ~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~---~~G~~~vi~~~~~~~~~~-------~~~~D~vid~  303 (392)
                      +++||+||+|++|...++.+.. .|++|+++++++++.+.+.   +.|.+...- +.+.+.+.       .+++|++|++
T Consensus         2 k~vlVTGas~gIG~~ia~~l~~-~G~~V~~~~r~~~~~~~~~~l~~~~~~~~~~-d~~~v~~~~~~~~~~~g~iD~lv~n   79 (254)
T 1zmt_A            2 STAIVTNVKHFGGMGSALRLSE-AGHTVACHDESFKQKDELEAFAETYPQLKPM-SEQEPAELIEAVTSAYGQVDVLVSN   79 (254)
T ss_dssp             CEEEESSTTSTTHHHHHHHHHH-TTCEEEECCGGGGSHHHHHHHHHHCTTSEEC-CCCSHHHHHHHHHHHHSCCCEEEEE
T ss_pred             eEEEEeCCCchHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHHHhcCCcEEEE-CHHHHHHHHHHHHHHhCCCCEEEEC
Confidence            3799999999999998887766 4999999888877765543   334332221 22222211       2378999998


Q ss_pred             Cc
Q 016265          304 IG  305 (392)
Q Consensus       304 ~G  305 (392)
                      .|
T Consensus        80 Ag   81 (254)
T 1zmt_A           80 DI   81 (254)
T ss_dssp             CC
T ss_pred             CC
Confidence            65

>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*

Probab=96.02  E-value=0.042  Score=51.45  Aligned_cols=73  Identities=18%  Similarity=0.182  Sum_probs=48.2

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCccc----HHHHHhc------CCcEEE--eCCCC-ccccCCCCcc
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRN----LEFLKSL------GADLAI--DYTKD-NFEDLPEKFD  298 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~----~~~~~~~------G~~~vi--~~~~~-~~~~~~~~~D  298 (392)
                      .+.+|||+||+|.+|...++.+.. .|.+|++++++..+    .+.++..      ..-.++  |..+. .+.+..+++|
T Consensus        24 ~~~~vlVtGatG~iG~~l~~~L~~-~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d  102 (351)
T 3ruf_A           24 SPKTWLITGVAGFIGSNLLEKLLK-LNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDIRDLTTCEQVMKGVD  102 (351)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHH-TTCEEEEEECCSSCCHHHHHHHHHTSCHHHHTTEEEEECCTTCHHHHHHHTTTCS
T ss_pred             CCCeEEEECCCcHHHHHHHHHHHH-CCCEEEEEeCCCCCchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHhcCCC
Confidence            367999999999999999888777 49999999875432    2333332      211223  22221 2333456899


Q ss_pred             EEEecCc
Q 016265          299 VVYDAIG  305 (392)
Q Consensus       299 ~vid~~G  305 (392)
                      +||.+.+
T Consensus       103 ~Vih~A~  109 (351)
T 3ruf_A          103 HVLHQAA  109 (351)
T ss_dssp             EEEECCC
T ss_pred             EEEECCc
Confidence            9999986

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=96.02  E-value=0.033  Score=51.87  Aligned_cols=85  Identities=13%  Similarity=0.090  Sum_probs=62.0

Q ss_pred             CeEEEEcCCCcHHHHHHHHHHHhcCC--eEEEEeCCcccHHHHHhcCCc-EEEeCCCCcccc-CCCCccEEEecCc--c-
Q 016265          234 KSILVLNGSGGVGSLVIQLAKQVFGA--SRVAATSSTRNLEFLKSLGAD-LAIDYTKDNFED-LPEKFDVVYDAIG--Q-  306 (392)
Q Consensus       234 ~~VlI~Ga~G~vG~~aiqlak~~~G~--~vv~~~~~~~~~~~~~~~G~~-~vi~~~~~~~~~-~~~~~D~vid~~G--~-  306 (392)
                      .+|.|+| .|.+|...++.++. .|.  +|++.++++++++.+++.|.. ...+    +..+ ..++.|+||.|+.  . 
T Consensus        34 ~kI~IIG-~G~mG~slA~~l~~-~G~~~~V~~~dr~~~~~~~a~~~G~~~~~~~----~~~~~~~~~aDvVilavp~~~~  107 (314)
T 3ggo_A           34 QNVLIVG-VGFMGGSFAKSLRR-SGFKGKIYGYDINPESISKAVDLGIIDEGTT----SIAKVEDFSPDFVMLSSPVRTF  107 (314)
T ss_dssp             SEEEEES-CSHHHHHHHHHHHH-TTCCSEEEEECSCHHHHHHHHHTTSCSEEES----CTTGGGGGCCSEEEECSCGGGH
T ss_pred             CEEEEEe-eCHHHHHHHHHHHh-CCCCCEEEEEECCHHHHHHHHHCCCcchhcC----CHHHHhhccCCEEEEeCCHHHH
Confidence            6899998 99999998888877 488  899999999999999988863 2222    2233 3457899999986  2 


Q ss_pred             ---HHHHHHhcccCCeEEEEc
Q 016265          307 ---CDRAVKAIKEGGTVVALT  324 (392)
Q Consensus       307 ---~~~~~~~l~~~G~iv~~g  324 (392)
                         ++.....++++..++.++
T Consensus       108 ~~vl~~l~~~l~~~~iv~d~~  128 (314)
T 3ggo_A          108 REIAKKLSYILSEDATVTDQG  128 (314)
T ss_dssp             HHHHHHHHHHSCTTCEEEECC
T ss_pred             HHHHHHHhhccCCCcEEEECC
Confidence               244555667776666654

>1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A*

Probab=95.98  E-value=0.044  Score=48.95  Aligned_cols=36  Identities=14%  Similarity=0.216  Sum_probs=30.1

Q ss_pred             CeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCccc
Q 016265          234 KSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRN  270 (392)
Q Consensus       234 ~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~  270 (392)
                      +++||+||+|++|...++.+.. .|++|+++++++++
T Consensus         2 k~vlVTGas~gIG~~~a~~l~~-~G~~V~~~~r~~~~   37 (257)
T 1fjh_A            2 SIIVISGCATGIGAATRKVLEA-AGHQIVGIDIRDAE   37 (257)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHH-TTCEEEEEESSSSS
T ss_pred             CEEEEeCCCCHHHHHHHHHHHH-CCCEEEEEeCCchh
Confidence            3799999999999998887766 49999999887654

>1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2

Probab=95.97  E-value=0.013  Score=52.48  Aligned_cols=73  Identities=25%  Similarity=0.328  Sum_probs=49.5

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHH-HhcCCcE-EE--eCCCCc-cccC-------CCCccE
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFL-KSLGADL-AI--DYTKDN-FEDL-------PEKFDV  299 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~-~~~G~~~-vi--~~~~~~-~~~~-------~~~~D~  299 (392)
                      .|.++||+||+|++|...++.+.. .|++|+++++++++++.+ +++|... .+  |..+.. +.+.       .+++|+
T Consensus         5 ~~k~vlVTGas~giG~~ia~~l~~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~id~   83 (253)
T 1hxh_A            5 QGKVALVTGGASGVGLEVVKLLLG-EGAKVAFSDINEAAGQQLAAELGERSMFVRHDVSSEADWTLVMAAVQRRLGTLNV   83 (253)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHH-TTCEEEEECSCHHHHHHHHHHHCTTEEEECCCTTCHHHHHHHHHHHHHHHCSCCE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHHcCCceEEEEccCCCHHHHHHHHHHHHHHcCCCCE
Confidence            478999999999999998877766 499999999887776554 3445332 22  222211 1111       236899


Q ss_pred             EEecCc
Q 016265          300 VYDAIG  305 (392)
Q Consensus       300 vid~~G  305 (392)
                      +|++.|
T Consensus        84 lv~~Ag   89 (253)
T 1hxh_A           84 LVNNAG   89 (253)
T ss_dssp             EEECCC
T ss_pred             EEECCC
Confidence            999976

>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2

Probab=95.97  E-value=0.019  Score=51.84  Aligned_cols=73  Identities=21%  Similarity=0.258  Sum_probs=48.9

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHH----hcCCcE-EE--eCCCCc-ccc-------CCCC
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLK----SLGADL-AI--DYTKDN-FED-------LPEK  296 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~----~~G~~~-vi--~~~~~~-~~~-------~~~~  296 (392)
                      .|.++||+||+|++|.+.++.+.. .|++|++++++.++++.+.    +.|... .+  |..+.. +.+       .-++
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~   84 (262)
T 1zem_A            6 NGKVCLVTGAGGNIGLATALRLAE-EGTAIALLDMNREALEKAEASVREKGVEARSYVCDVTSEEAVIGTVDSVVRDFGK   84 (262)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHHTTTSCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHhCC
Confidence            478999999999999998877766 4999999998877665432    234332 22  332221 111       1237


Q ss_pred             ccEEEecCc
Q 016265          297 FDVVYDAIG  305 (392)
Q Consensus       297 ~D~vid~~G  305 (392)
                      +|++|++.|
T Consensus        85 id~lv~nAg   93 (262)
T 1zem_A           85 IDFLFNNAG   93 (262)
T ss_dssp             CCEEEECCC
T ss_pred             CCEEEECCC
Confidence            899999875

>1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A*

Probab=95.97  E-value=0.0086  Score=53.15  Aligned_cols=73  Identities=21%  Similarity=0.144  Sum_probs=47.9

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhc-CCeEEEEeCCcccHHHHHhcCCcE-EEeCCC-CccccCCCCccEEEecCc
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVF-GASRVAATSSTRNLEFLKSLGADL-AIDYTK-DNFEDLPEKFDVVYDAIG  305 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~-G~~vv~~~~~~~~~~~~~~~G~~~-vi~~~~-~~~~~~~~~~D~vid~~G  305 (392)
                      .+.+|||+||+|.+|...++.+.... |.+|+++++++++.+.+ ..+... ..|..+ +.+.+..+++|+||.+.|
T Consensus         3 ~~~~ilVtGasG~iG~~l~~~l~~~~~g~~V~~~~r~~~~~~~~-~~~~~~~~~D~~d~~~~~~~~~~~d~vi~~a~   78 (253)
T 1xq6_A            3 NLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKI-GGEADVFIGDITDADSINPAFQGIDALVILTS   78 (253)
T ss_dssp             SCCEEEEESTTSHHHHHHHHHHHHTTTTCEEEEEESCHHHHHHT-TCCTTEEECCTTSHHHHHHHHTTCSEEEECCC
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHhcCCCcEEEEEEcCCCchhhc-CCCeeEEEecCCCHHHHHHHHcCCCEEEEecc
Confidence            46789999999999999888776622 78999999887665433 112222 123322 123333457899998865

>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0

Probab=95.96  E-value=0.016  Score=52.72  Aligned_cols=73  Identities=21%  Similarity=0.303  Sum_probs=46.7

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHH---hcCCcE-EE--eCCCCc-cccC------CCCcc
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLK---SLGADL-AI--DYTKDN-FEDL------PEKFD  298 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~---~~G~~~-vi--~~~~~~-~~~~------~~~~D  298 (392)
                      .|.++||+||+|++|.+.++.+.. .|++|+++++++...+.++   +.|... .+  |..+.. ..+.      .+++|
T Consensus        30 ~gk~~lVTGas~GIG~aia~~la~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~g~iD  108 (273)
T 3uf0_A           30 AGRTAVVTGAGSGIGRAIAHGYAR-AGAHVLAWGRTDGVKEVADEIADGGGSAEAVVADLADLEGAANVAEELAATRRVD  108 (273)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHH-TTCEEEEEESSTHHHHHHHHHHTTTCEEEEEECCTTCHHHHHHHHHHHHHHSCCC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHH-CCCEEEEEcCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHhcCCCc
Confidence            578999999999999987776666 4999998886544333333   334322 22  322211 1111      14789


Q ss_pred             EEEecCc
Q 016265          299 VVYDAIG  305 (392)
Q Consensus       299 ~vid~~G  305 (392)
                      ++|++.|
T Consensus       109 ~lv~nAg  115 (273)
T 3uf0_A          109 VLVNNAG  115 (273)
T ss_dssp             EEEECCC
T ss_pred             EEEECCC
Confidence            9999876

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=95.95  E-value=0.029  Score=50.97  Aligned_cols=96  Identities=16%  Similarity=0.185  Sum_probs=65.2

Q ss_pred             HhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhc-CCeEEEEeCCcccHHHHHhc-----CCcE--EEeCCCCccccCCCCc
Q 016265          226 ERTGFSAGKSILVLNGSGGVGSLVIQLAKQVF-GASRVAATSSTRNLEFLKSL-----GADL--AIDYTKDNFEDLPEKF  297 (392)
Q Consensus       226 ~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~-G~~vv~~~~~~~~~~~~~~~-----G~~~--vi~~~~~~~~~~~~~~  297 (392)
                      ....++++++||-.| +| .|..+..+++.+. +.+++.++.+++..+.+++.     |.+.  ++..+-... ...+.+
T Consensus       104 ~~~~~~~~~~VLD~G-~G-~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~-~~~~~f  180 (275)
T 1yb2_A          104 MRCGLRPGMDILEVG-VG-SGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADF-ISDQMY  180 (275)
T ss_dssp             --CCCCTTCEEEEEC-CT-TSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTC-CCSCCE
T ss_pred             HHcCCCCcCEEEEec-CC-CCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECchhcc-CcCCCc
Confidence            456788999999997 55 6888888888632 57889999999888777543     5332  221111111 012469


Q ss_pred             cEEEecCc----cHHHHHHhcccCCeEEEEc
Q 016265          298 DVVYDAIG----QCDRAVKAIKEGGTVVALT  324 (392)
Q Consensus       298 D~vid~~G----~~~~~~~~l~~~G~iv~~g  324 (392)
                      |+|+....    .++.+.+.|++||+++...
T Consensus       181 D~Vi~~~~~~~~~l~~~~~~LkpgG~l~i~~  211 (275)
T 1yb2_A          181 DAVIADIPDPWNHVQKIASMMKPGSVATFYL  211 (275)
T ss_dssp             EEEEECCSCGGGSHHHHHHTEEEEEEEEEEE
T ss_pred             cEEEEcCcCHHHHHHHHHHHcCCCCEEEEEe
Confidence            99997554    3688999999999998764

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=95.95  E-value=0.0097  Score=52.15  Aligned_cols=90  Identities=20%  Similarity=0.244  Sum_probs=58.1

Q ss_pred             CeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEE--eCCC-CccccCCCCccEEEecCcc----
Q 016265          234 KSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAI--DYTK-DNFEDLPEKFDVVYDAIGQ----  306 (392)
Q Consensus       234 ~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi--~~~~-~~~~~~~~~~D~vid~~G~----  306 (392)
                      .+|||+||+|.+|...++.+.. .|.+|+++++++.+.+.+. .+. .++  |..+ +.+.+..+++|+||.+.|.    
T Consensus         5 ~~ilItGatG~iG~~l~~~L~~-~g~~V~~~~r~~~~~~~~~-~~~-~~~~~Dl~d~~~~~~~~~~~d~vi~~a~~~~~~   81 (227)
T 3dhn_A            5 KKIVLIGASGFVGSALLNEALN-RGFEVTAVVRHPEKIKIEN-EHL-KVKKADVSSLDEVCEVCKGADAVISAFNPGWNN   81 (227)
T ss_dssp             CEEEEETCCHHHHHHHHHHHHT-TTCEEEEECSCGGGCCCCC-TTE-EEECCCTTCHHHHHHHHTTCSEEEECCCC----
T ss_pred             CEEEEEcCCchHHHHHHHHHHH-CCCEEEEEEcCcccchhcc-Cce-EEEEecCCCHHHHHHHhcCCCEEEEeCcCCCCC
Confidence            5899999999999999888877 4999999998876543221 111 122  2222 1223334579999999872    


Q ss_pred             ----------HHHHHHhcccC--CeEEEEcCC
Q 016265          307 ----------CDRAVKAIKEG--GTVVALTGA  326 (392)
Q Consensus       307 ----------~~~~~~~l~~~--G~iv~~g~~  326 (392)
                                ...+++.++..  +++|.++..
T Consensus        82 ~~~~~~n~~~~~~l~~~~~~~~~~~~v~~Ss~  113 (227)
T 3dhn_A           82 PDIYDETIKVYLTIIDGVKKAGVNRFLMVGGA  113 (227)
T ss_dssp             --CCSHHHHHHHHHHHHHHHTTCSEEEEECCS
T ss_pred             hhHHHHHHHHHHHHHHHHHHhCCCEEEEeCCh
Confidence                      13445555543  478887654

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=95.95  E-value=0.0064  Score=54.62  Aligned_cols=94  Identities=15%  Similarity=0.205  Sum_probs=62.3

Q ss_pred             CCCCCCeEEEEcCCCcHHHHHHHHHHHhc-CCeEEEEeCCcccHHHHHh----cCCc---EEEeCCCCc-cccC--CCCc
Q 016265          229 GFSAGKSILVLNGSGGVGSLVIQLAKQVF-GASRVAATSSTRNLEFLKS----LGAD---LAIDYTKDN-FEDL--PEKF  297 (392)
Q Consensus       229 ~~~~g~~VlI~Ga~G~vG~~aiqlak~~~-G~~vv~~~~~~~~~~~~~~----~G~~---~vi~~~~~~-~~~~--~~~~  297 (392)
                      ...++.+||-+| +| .|..+..+|+.+. +.+++.++.+++.++.+++    .|..   .++..+... ....  .+.|
T Consensus        60 ~~~~~~~VLdiG-~G-~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~~~~f  137 (248)
T 3tfw_A           60 RLTQAKRILEIG-TL-GGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGECPAF  137 (248)
T ss_dssp             HHHTCSEEEEEC-CT-TSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCSCCCC
T ss_pred             hhcCCCEEEEec-CC-chHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCCCCCe
Confidence            345788999998 54 4888889998642 5788899999988877754    3543   122221111 1222  2379


Q ss_pred             cEEEecCc------cHHHHHHhcccCCeEEEEc
Q 016265          298 DVVYDAIG------QCDRAVKAIKEGGTVVALT  324 (392)
Q Consensus       298 D~vid~~G------~~~~~~~~l~~~G~iv~~g  324 (392)
                      |+|+-...      .++.+.++|+|||.++.-.
T Consensus       138 D~V~~d~~~~~~~~~l~~~~~~LkpGG~lv~~~  170 (248)
T 3tfw_A          138 DLIFIDADKPNNPHYLRWALRYSRPGTLIIGDN  170 (248)
T ss_dssp             SEEEECSCGGGHHHHHHHHHHTCCTTCEEEEEC
T ss_pred             EEEEECCchHHHHHHHHHHHHhcCCCeEEEEeC
Confidence            99983322      2578889999999987653

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=95.94  E-value=0.008  Score=53.45  Aligned_cols=93  Identities=15%  Similarity=0.123  Sum_probs=63.1

Q ss_pred             CCCCCCeEEEEcCCCcHHHHHHHHHHHhc-CCeEEEEeCCcccHHHHHh----cCCcE---EEeCCCCc-cccC------
Q 016265          229 GFSAGKSILVLNGSGGVGSLVIQLAKQVF-GASRVAATSSTRNLEFLKS----LGADL---AIDYTKDN-FEDL------  293 (392)
Q Consensus       229 ~~~~g~~VlI~Ga~G~vG~~aiqlak~~~-G~~vv~~~~~~~~~~~~~~----~G~~~---vi~~~~~~-~~~~------  293 (392)
                      ...++++||-+| +| .|..+..+++... +.+++.++.+++..+.+++    .|.+.   ++..+... ....      
T Consensus        57 ~~~~~~~VLdiG-~G-~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~  134 (239)
T 2hnk_A           57 KISGAKRIIEIG-TF-TGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSA  134 (239)
T ss_dssp             HHHTCSEEEEEC-CT-TCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSC
T ss_pred             HhhCcCEEEEEe-CC-CCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhccc
Confidence            345788999998 55 6999999998732 5788899999888777654    35432   22211111 1111      


Q ss_pred             ---------C-CCccEEEecCc------cHHHHHHhcccCCeEEEE
Q 016265          294 ---------P-EKFDVVYDAIG------QCDRAVKAIKEGGTVVAL  323 (392)
Q Consensus       294 ---------~-~~~D~vid~~G------~~~~~~~~l~~~G~iv~~  323 (392)
                               . +.||+|+...+      .++.+.++|++||+++..
T Consensus       135 ~~~~~~f~~~~~~fD~I~~~~~~~~~~~~l~~~~~~L~pgG~lv~~  180 (239)
T 2hnk_A          135 PSWASDFAFGPSSIDLFFLDADKENYPNYYPLILKLLKPGGLLIAD  180 (239)
T ss_dssp             CGGGTTTCCSTTCEEEEEECSCGGGHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ccccccccCCCCCcCEEEEeCCHHHHHHHHHHHHHHcCCCeEEEEE
Confidence                     1 57999997654      147888999999999865

>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A*

Probab=95.94  E-value=0.026  Score=51.83  Aligned_cols=73  Identities=22%  Similarity=0.373  Sum_probs=48.8

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHH-hc----CCcE-EE--eCCCCc-ccc-------CCC
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLK-SL----GADL-AI--DYTKDN-FED-------LPE  295 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~-~~----G~~~-vi--~~~~~~-~~~-------~~~  295 (392)
                      .|.++||+||+|++|...+..+.. .|++|++++++.++.+.+. ++    |... ++  |..+.. +.+       ..+
T Consensus        25 ~~k~vlITGasggiG~~la~~L~~-~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g  103 (302)
T 1w6u_A           25 QGKVAFITGGGTGLGKGMTTLLSS-LGAQCVIASRKMDVLKATAEQISSQTGNKVHAIQCDVRDPDMVQNTVSELIKVAG  103 (302)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred             CCCEEEEECCCchHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCCCCHHHHHHHHHHHHHHcC
Confidence            478999999999999998877766 4999999998877655432 22    4332 22  322211 111       124


Q ss_pred             CccEEEecCc
Q 016265          296 KFDVVYDAIG  305 (392)
Q Consensus       296 ~~D~vid~~G  305 (392)
                      .+|++|++.|
T Consensus       104 ~id~li~~Ag  113 (302)
T 1w6u_A          104 HPNIVINNAA  113 (302)
T ss_dssp             SCSEEEECCC
T ss_pred             CCCEEEECCC
Confidence            6899999876

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=95.94  E-value=0.011  Score=55.10  Aligned_cols=81  Identities=16%  Similarity=0.206  Sum_probs=51.7

Q ss_pred             HHHHhcCC-CCCCeEEEEcCCCcHHHHHHHHHHHhcCC-eEEEEeCC---cccHHHH-Hhc----CCc-EEEeCCC-Ccc
Q 016265          223 EGLERTGF-SAGKSILVLNGSGGVGSLVIQLAKQVFGA-SRVAATSS---TRNLEFL-KSL----GAD-LAIDYTK-DNF  290 (392)
Q Consensus       223 ~al~~~~~-~~g~~VlI~Ga~G~vG~~aiqlak~~~G~-~vv~~~~~---~~~~~~~-~~~----G~~-~vi~~~~-~~~  290 (392)
                      .+|+.... -.|.+++|+| +|++|.+++..+.. .|+ +++++.++   .+|.+.+ +++    +.. .++++.+ +++
T Consensus       143 ~~L~~~~~~l~gk~~lVlG-aGG~g~aia~~L~~-~Ga~~V~i~nR~~~~~~~a~~la~~~~~~~~~~~~~~~~~~~~~l  220 (315)
T 3tnl_A          143 RALKEAGHDIIGKKMTICG-AGGAATAICIQAAL-DGVKEISIFNRKDDFYANAEKTVEKINSKTDCKAQLFDIEDHEQL  220 (315)
T ss_dssp             HHHHHTTCCCTTSEEEEEC-CSHHHHHHHHHHHH-TTCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCHHHH
T ss_pred             HHHHHcCCCccCCEEEEEC-CChHHHHHHHHHHH-CCCCEEEEEECCCchHHHHHHHHHHhhhhcCCceEEeccchHHHH
Confidence            34544443 3688999999 69999998887777 498 78888888   5554433 232    322 2344433 122


Q ss_pred             ccCCCCccEEEecCc
Q 016265          291 EDLPEKFDVVYDAIG  305 (392)
Q Consensus       291 ~~~~~~~D~vid~~G  305 (392)
                      .+....+|+||+|+.
T Consensus       221 ~~~l~~aDiIINaTp  235 (315)
T 3tnl_A          221 RKEIAESVIFTNATG  235 (315)
T ss_dssp             HHHHHTCSEEEECSS
T ss_pred             HhhhcCCCEEEECcc
Confidence            233347899999975

>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti}

Probab=95.94  E-value=0.01  Score=54.34  Aligned_cols=73  Identities=26%  Similarity=0.378  Sum_probs=48.8

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHH-hc---CCcEEE---eCCCCc-cccC-------CCC
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLK-SL---GADLAI---DYTKDN-FEDL-------PEK  296 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~-~~---G~~~vi---~~~~~~-~~~~-------~~~  296 (392)
                      .|+++||+||+|++|.+.++.+.. .|++|++++++.++++.+. ++   |....+   |..+.. +.+.       -++
T Consensus         7 ~gk~vlVTGas~GIG~aia~~la~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   85 (280)
T 3tox_A            7 EGKIAIVTGASSGIGRAAALLFAR-EGAKVVVTARNGNALAELTDEIAGGGGEAAALAGDVGDEALHEALVELAVRRFGG   85 (280)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHH-TTCEEEECCSCHHHHHHHHHHHTTTTCCEEECCCCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHH-CCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence            578999999999999998776666 4999999998887765543 22   333222   222211 1111       237


Q ss_pred             ccEEEecCc
Q 016265          297 FDVVYDAIG  305 (392)
Q Consensus       297 ~D~vid~~G  305 (392)
                      +|++|++.|
T Consensus        86 iD~lvnnAg   94 (280)
T 3tox_A           86 LDTAFNNAG   94 (280)
T ss_dssp             CCEEEECCC
T ss_pred             CCEEEECCC
Confidence            899999876

>2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl carrier protein) reductase, short-chain dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis}

Probab=95.93  E-value=0.014  Score=52.17  Aligned_cols=73  Identities=25%  Similarity=0.381  Sum_probs=48.4

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeC-CcccHHHH----HhcCCcE-EE--eCCCCc-cccC-------CC
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATS-STRNLEFL----KSLGADL-AI--DYTKDN-FEDL-------PE  295 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~-~~~~~~~~----~~~G~~~-vi--~~~~~~-~~~~-------~~  295 (392)
                      .|.+++|+||+|++|...++.+.. .|++|+++++ ++++.+.+    ++.|... .+  |..+.. +.+.       -+
T Consensus         3 ~~k~vlVTGas~giG~~ia~~l~~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g   81 (246)
T 2uvd_A            3 KGKVALVTGASRGIGRAIAIDLAK-QGANVVVNYAGNEQKANEVVDEIKKLGSDAIAVRADVANAEDVTNMVKQTVDVFG   81 (246)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHH-TTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHH-CCCEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            468999999999999998877766 4999999888 66665433    2335332 22  332221 1111       13


Q ss_pred             CccEEEecCc
Q 016265          296 KFDVVYDAIG  305 (392)
Q Consensus       296 ~~D~vid~~G  305 (392)
                      ++|++|++.|
T Consensus        82 ~id~lv~nAg   91 (246)
T 2uvd_A           82 QVDILVNNAG   91 (246)
T ss_dssp             CCCEEEECCC
T ss_pred             CCCEEEECCC
Confidence            7999999877

>3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus}

Probab=95.93  E-value=0.0093  Score=54.15  Aligned_cols=72  Identities=18%  Similarity=0.271  Sum_probs=47.4

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEE--eCCCC-ccccC-------CCCccEEE
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAI--DYTKD-NFEDL-------PEKFDVVY  301 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi--~~~~~-~~~~~-------~~~~D~vi  301 (392)
                      .++++||+||+|++|.+.+..+.. .|++|++++++.++++.+..... ..+  |..+. .+.+.       -+++|++|
T Consensus        15 ~~k~vlVTGas~gIG~aia~~l~~-~G~~V~~~~r~~~~~~~~~~~~~-~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lv   92 (266)
T 3p19_A           15 MKKLVVITGASSGIGEAIARRFSE-EGHPLLLLARRVERLKALNLPNT-LCAQVDVTDKYTFDTAITRAEKIYGPADAIV   92 (266)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHH-TTCCEEEEESCHHHHHTTCCTTE-EEEECCTTCHHHHHHHHHHHHHHHCSEEEEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHH-CCCEEEEEECCHHHHHHhhcCCc-eEEEecCCCHHHHHHHHHHHHHHCCCCCEEE
Confidence            468999999999999998776666 49999999988766554322111 122  32221 11111       23789999


Q ss_pred             ecCc
Q 016265          302 DAIG  305 (392)
Q Consensus       302 d~~G  305 (392)
                      ++.|
T Consensus        93 nnAg   96 (266)
T 3p19_A           93 NNAG   96 (266)
T ss_dssp             ECCC
T ss_pred             ECCC
Confidence            9977

>2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A*

Probab=95.93  E-value=0.022  Score=50.60  Aligned_cols=73  Identities=15%  Similarity=0.327  Sum_probs=49.3

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHh-----cCCcE-EE--eCCCCc-cccC-------CC
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKS-----LGADL-AI--DYTKDN-FEDL-------PE  295 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~-----~G~~~-vi--~~~~~~-~~~~-------~~  295 (392)
                      .|.+++|+||+|++|...++.+.. .|++|++++++.++.+.+.+     .+... .+  |..+.. +.+.       -+
T Consensus         6 ~~~~vlVtGasggiG~~la~~l~~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   84 (248)
T 2pnf_A            6 QGKVSLVTGSTRGIGRAIAEKLAS-AGSTVIITGTSGERAKAVAEEIANKYGVKAHGVEMNLLSEESINKAFEEIYNLVD   84 (248)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHH-TTCEEEEEESSHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHHHHHHHHSS
T ss_pred             CCCEEEEECCCchHHHHHHHHHHH-CCCEEEEEeCChHHHHHHHHHHHhhcCCceEEEEccCCCHHHHHHHHHHHHHhcC
Confidence            478999999999999998887766 49999999988776654422     34332 22  322221 1111       24


Q ss_pred             CccEEEecCc
Q 016265          296 KFDVVYDAIG  305 (392)
Q Consensus       296 ~~D~vid~~G  305 (392)
                      ++|++|.+.|
T Consensus        85 ~~d~vi~~Ag   94 (248)
T 2pnf_A           85 GIDILVNNAG   94 (248)
T ss_dssp             CCSEEEECCC
T ss_pred             CCCEEEECCC
Confidence            7999999876

>3oml_A GH14720P, peroxisomal multifunctional enzyme type 2, CG3415; rossmann fold, hot-DOG fold, hydratase 2 motif, peroxisomes, oxidoreductase; 2.15A {Drosophila melanogaster}

Probab=95.93  E-value=0.021  Score=58.43  Aligned_cols=73  Identities=21%  Similarity=0.306  Sum_probs=44.2

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeC---------CcccHHH----HHhcCCcEEEeCCCCc-ccc----C
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATS---------STRNLEF----LKSLGADLAIDYTKDN-FED----L  293 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~---------~~~~~~~----~~~~G~~~vi~~~~~~-~~~----~  293 (392)
                      .|+++||+||++++|.+.+..+.. .|++|+++++         +.++.+.    +++.|...+.|..+.. ..+    .
T Consensus        18 ~gk~~lVTGas~GIG~aiA~~La~-~Ga~Vv~~~r~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~D~~d~~~~~~~~~~~   96 (613)
T 3oml_A           18 DGRVAVVTGAGAGLGREYALLFAE-RGAKVVVNDLGGTHSGDGASQRAADIVVDEIRKAGGEAVADYNSVIDGAKVIETA   96 (613)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHH-TTCEEEEC--------------CHHHHHHHHHHTTCCEEECCCCGGGHHHHHC--
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHH-CCCEEEEEeCCcccccccCCHHHHHHHHHHHHHhCCeEEEEeCCHHHHHHHHHHH
Confidence            578999999999999997776656 4999998875         4444433    3445666666655432 111    1


Q ss_pred             ---CCCccEEEecCc
Q 016265          294 ---PEKFDVVYDAIG  305 (392)
Q Consensus       294 ---~~~~D~vid~~G  305 (392)
                         -+++|++|++.|
T Consensus        97 ~~~~g~iDiLVnnAG  111 (613)
T 3oml_A           97 IKAFGRVDILVNNAG  111 (613)
T ss_dssp             --------CEECCCC
T ss_pred             HHHCCCCcEEEECCC
Confidence               236899999987

>4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum}

Probab=95.92  E-value=0.018  Score=52.37  Aligned_cols=73  Identities=19%  Similarity=0.306  Sum_probs=49.3

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHH----HhcCCcEEE---eCCCCc-ccc-------CCCC
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFL----KSLGADLAI---DYTKDN-FED-------LPEK  296 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~----~~~G~~~vi---~~~~~~-~~~-------~~~~  296 (392)
                      .|+++||+||+|++|.+.++.... .|++|+++++++++.+.+    ++.|....+   |..+.. +.+       ..++
T Consensus        25 ~gk~~lVTGas~gIG~aia~~la~-~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~  103 (271)
T 4ibo_A           25 GGRTALVTGSSRGLGRAMAEGLAV-AGARILINGTDPSRVAQTVQEFRNVGHDAEAVAFDVTSESEIIEAFARLDEQGID  103 (271)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHH-TTCEEEECCSCHHHHHHHHHHHHHTTCCEEECCCCTTCHHHHHHHHHHHHHHTCC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHCCC
Confidence            578999999999999988776666 499999988887765543    334543322   222211 111       1347


Q ss_pred             ccEEEecCc
Q 016265          297 FDVVYDAIG  305 (392)
Q Consensus       297 ~D~vid~~G  305 (392)
                      +|++|++.|
T Consensus       104 iD~lv~nAg  112 (271)
T 4ibo_A          104 VDILVNNAG  112 (271)
T ss_dssp             CCEEEECCC
T ss_pred             CCEEEECCC
Confidence            999999977

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=95.92  E-value=0.065  Score=48.51  Aligned_cols=95  Identities=23%  Similarity=0.239  Sum_probs=65.2

Q ss_pred             HHHhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcE--EEeCCCCcc---ccCCCCcc
Q 016265          224 GLERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADL--AIDYTKDNF---EDLPEKFD  298 (392)
Q Consensus       224 al~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~--vi~~~~~~~---~~~~~~~D  298 (392)
                      .+....+.+|++||=+| + |.|..+..+++.  |++|+.++.+++-++.+++.-...  ..+..+.+.   ....+.||
T Consensus        37 il~~l~l~~g~~VLDlG-c-GtG~~a~~La~~--g~~V~gvD~S~~ml~~Ar~~~~~~~v~~~~~~~~~~~~~~~~~~fD  112 (261)
T 3iv6_A           37 DIFLENIVPGSTVAVIG-A-STRFLIEKALER--GASVTVFDFSQRMCDDLAEALADRCVTIDLLDITAEIPKELAGHFD  112 (261)
T ss_dssp             HHHTTTCCTTCEEEEEC-T-TCHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHTSSSCCEEEECCTTSCCCGGGTTCCS
T ss_pred             HHHhcCCCCcCEEEEEe-C-cchHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHhccceeeeeecccccccccCCCcc
Confidence            44567788999999997 4 458899999974  889999999999888887643221  122222222   22345799


Q ss_pred             EEEecCc-----------cHHHHHHhcccCCeEEEE
Q 016265          299 VVYDAIG-----------QCDRAVKAIKEGGTVVAL  323 (392)
Q Consensus       299 ~vid~~G-----------~~~~~~~~l~~~G~iv~~  323 (392)
                      +|+.+..           .+..+.+++ |||+++.-
T Consensus       113 ~Vv~~~~l~~~~~~~~~~~l~~l~~lL-PGG~l~lS  147 (261)
T 3iv6_A          113 FVLNDRLINRFTTEEARRACLGMLSLV-GSGTVRAS  147 (261)
T ss_dssp             EEEEESCGGGSCHHHHHHHHHHHHHHH-TTSEEEEE
T ss_pred             EEEEhhhhHhCCHHHHHHHHHHHHHhC-cCcEEEEE
Confidence            9986532           135666788 99998753

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=95.92  E-value=0.035  Score=49.51  Aligned_cols=93  Identities=16%  Similarity=0.204  Sum_probs=64.3

Q ss_pred             CCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHh----cCCc---EEEeCCCCccccCCCCccEEE
Q 016265          229 GFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKS----LGAD---LAIDYTKDNFEDLPEKFDVVY  301 (392)
Q Consensus       229 ~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~----~G~~---~vi~~~~~~~~~~~~~~D~vi  301 (392)
                      .+.++++||-+| +| .|..+..+++. .+.+++.++.++..++.+++    .|..   .++..+-..+....+.||+|+
T Consensus        43 ~~~~~~~vLDiG-~G-~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~  119 (257)
T 3f4k_A           43 ELTDDAKIADIG-CG-TGGQTLFLADY-VKGQITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLPFQNEELDLIW  119 (257)
T ss_dssp             CCCTTCEEEEET-CT-TSHHHHHHHHH-CCSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCSSCTTCEEEEE
T ss_pred             cCCCCCeEEEeC-CC-CCHHHHHHHHh-CCCeEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCCCCCCCEEEEE
Confidence            678899999997 55 49999999987 46689999999887777644    3432   222222222221235799998


Q ss_pred             ecCc--------cHHHHHHhcccCCeEEEEc
Q 016265          302 DAIG--------QCDRAVKAIKEGGTVVALT  324 (392)
Q Consensus       302 d~~G--------~~~~~~~~l~~~G~iv~~g  324 (392)
                      ....        .+..+.++|+|||+++...
T Consensus       120 ~~~~l~~~~~~~~l~~~~~~L~pgG~l~~~~  150 (257)
T 3f4k_A          120 SEGAIYNIGFERGMNEWSKYLKKGGFIAVSE  150 (257)
T ss_dssp             EESCSCCCCHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             ecChHhhcCHHHHHHHHHHHcCCCcEEEEEE
Confidence            5422        2578888999999998764

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=95.91  E-value=0.033  Score=50.15  Aligned_cols=98  Identities=15%  Similarity=0.190  Sum_probs=65.9

Q ss_pred             HHHhc-CCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHh----cCCc---EEEeCCCCccccCCC
Q 016265          224 GLERT-GFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKS----LGAD---LAIDYTKDNFEDLPE  295 (392)
Q Consensus       224 al~~~-~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~----~G~~---~vi~~~~~~~~~~~~  295 (392)
                      .+... .++++++||-+| +| .|..+..+++. .+++++.++.++..++.+++    .|..   .++..+-.++....+
T Consensus        37 ~l~~l~~~~~~~~vLDiG-cG-~G~~~~~la~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~  113 (267)
T 3kkz_A           37 ALSFIDNLTEKSLIADIG-CG-TGGQTMVLAGH-VTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLPFRNE  113 (267)
T ss_dssp             HHTTCCCCCTTCEEEEET-CT-TCHHHHHHHTT-CSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTT
T ss_pred             HHHhcccCCCCCEEEEeC-CC-CCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhCCCCCC
Confidence            34433 378899999998 55 58899999987 56799999999987777654    3432   222222222221235


Q ss_pred             CccEEEecCc--------cHHHHHHhcccCCeEEEEc
Q 016265          296 KFDVVYDAIG--------QCDRAVKAIKEGGTVVALT  324 (392)
Q Consensus       296 ~~D~vid~~G--------~~~~~~~~l~~~G~iv~~g  324 (392)
                      .||+|+..-.        .+..+.++|+|||+++...
T Consensus       114 ~fD~i~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  150 (267)
T 3kkz_A          114 ELDLIWSEGAIYNIGFERGLNEWRKYLKKGGYLAVSE  150 (267)
T ss_dssp             CEEEEEESSCGGGTCHHHHHHHHGGGEEEEEEEEEEE
T ss_pred             CEEEEEEcCCceecCHHHHHHHHHHHcCCCCEEEEEE
Confidence            7999986432        2477888999999998764

>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum}

Probab=95.91  E-value=0.011  Score=56.11  Aligned_cols=85  Identities=19%  Similarity=0.251  Sum_probs=63.0

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCCccccCCCCccEEEecCcc-----
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFEDLPEKFDVVYDAIGQ-----  306 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~~~~~~~D~vid~~G~-----  306 (392)
                      .|.+|.|+| .|.+|...++.++. +|.+|++.+++. +.+.+.+.|+..+     .++.+..+..|+|+-++..     
T Consensus       159 ~g~tvGIIG-lG~IG~~vA~~l~~-~G~~V~~~d~~~-~~~~~~~~g~~~~-----~~l~ell~~aDiV~l~~Plt~~t~  230 (352)
T 3gg9_A          159 KGQTLGIFG-YGKIGQLVAGYGRA-FGMNVLVWGREN-SKERARADGFAVA-----ESKDALFEQSDVLSVHLRLNDETR  230 (352)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHH-TTCEEEEECSHH-HHHHHHHTTCEEC-----SSHHHHHHHCSEEEECCCCSTTTT
T ss_pred             CCCEEEEEe-ECHHHHHHHHHHHh-CCCEEEEECCCC-CHHHHHhcCceEe-----CCHHHHHhhCCEEEEeccCcHHHH
Confidence            478999998 99999999999998 699999888764 4455666776421     1233444467888887641     


Q ss_pred             --H-HHHHHhcccCCeEEEEc
Q 016265          307 --C-DRAVKAIKEGGTVVALT  324 (392)
Q Consensus       307 --~-~~~~~~l~~~G~iv~~g  324 (392)
                        + ...++.|+++..+|.++
T Consensus       231 ~li~~~~l~~mk~gailIN~a  251 (352)
T 3gg9_A          231 SIITVADLTRMKPTALFVNTS  251 (352)
T ss_dssp             TCBCHHHHTTSCTTCEEEECS
T ss_pred             HhhCHHHHhhCCCCcEEEECC
Confidence              1 57788899999888875

>1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A*

Probab=95.89  E-value=0.015  Score=52.48  Aligned_cols=73  Identities=21%  Similarity=0.248  Sum_probs=49.2

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHH-hcCCc-EEE--eCCCCc-cccC-------CCCccE
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLK-SLGAD-LAI--DYTKDN-FEDL-------PEKFDV  299 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~-~~G~~-~vi--~~~~~~-~~~~-------~~~~D~  299 (392)
                      .|.++||+||+|++|...++.+.. .|++|+++++++++.+.+. +++.. ..+  |..+.. +.+.       -+++|+
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~iD~   84 (260)
T 1nff_A            6 TGKVALVSGGARGMGASHVRAMVA-EGAKVVFGDILDEEGKAMAAELADAARYVHLDVTQPAQWKAAVDTAVTAFGGLHV   84 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHHTGGGEEEEECCTTCHHHHHHHHHHHHHHHSCCCE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHHHcCCCCE
Confidence            478999999999999998877766 4999999999877765543 33321 222  332211 1111       137999


Q ss_pred             EEecCc
Q 016265          300 VYDAIG  305 (392)
Q Consensus       300 vid~~G  305 (392)
                      +|++.|
T Consensus        85 lv~~Ag   90 (260)
T 1nff_A           85 LVNNAG   90 (260)
T ss_dssp             EEECCC
T ss_pred             EEECCC
Confidence            999876

>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}

Probab=95.88  E-value=0.0096  Score=56.77  Aligned_cols=90  Identities=20%  Similarity=0.269  Sum_probs=63.8

Q ss_pred             CeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCC-ccccCCCCccEEEecCcc---HHH
Q 016265          234 KSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKD-NFEDLPEKFDVVYDAIGQ---CDR  309 (392)
Q Consensus       234 ~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~-~~~~~~~~~D~vid~~G~---~~~  309 (392)
                      .+|+|+| +|.+|..+++.+..  ...+.+++.+.++++.+++......+|..+. ...+..+++|+||+|++.   ...
T Consensus        17 mkilvlG-aG~vG~~~~~~L~~--~~~v~~~~~~~~~~~~~~~~~~~~~~d~~d~~~l~~~~~~~DvVi~~~p~~~~~~v   93 (365)
T 3abi_A           17 MKVLILG-AGNIGRAIAWDLKD--EFDVYIGDVNNENLEKVKEFATPLKVDASNFDKLVEVMKEFELVIGALPGFLGFKS   93 (365)
T ss_dssp             CEEEEEC-CSHHHHHHHHHHTT--TSEEEEEESCHHHHHHHTTTSEEEECCTTCHHHHHHHHTTCSEEEECCCGGGHHHH
T ss_pred             cEEEEEC-CCHHHHHHHHHHhc--CCCeEEEEcCHHHHHHHhccCCcEEEecCCHHHHHHHHhCCCEEEEecCCcccchH
Confidence            3699998 59999998887753  5678888899888888776543333444332 233445689999999983   355


Q ss_pred             HHHhcccCCeEEEEcCC
Q 016265          310 AVKAIKEGGTVVALTGA  326 (392)
Q Consensus       310 ~~~~l~~~G~iv~~g~~  326 (392)
                      +-.|++.|=.++.++..
T Consensus        94 ~~~~~~~g~~yvD~s~~  110 (365)
T 3abi_A           94 IKAAIKSKVDMVDVSFM  110 (365)
T ss_dssp             HHHHHHHTCEEEECCCC
T ss_pred             HHHHHhcCcceEeeecc
Confidence            66677777788887643

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=95.87  E-value=0.0091  Score=55.31  Aligned_cols=91  Identities=15%  Similarity=0.165  Sum_probs=60.0

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHHHHhcCC-eEEEEeCCcccHHH-HHhcCCc--EEEeCCCCccccCCCCccEEEecCcc
Q 016265          231 SAGKSILVLNGSGGVGSLVIQLAKQVFGA-SRVAATSSTRNLEF-LKSLGAD--LAIDYTKDNFEDLPEKFDVVYDAIGQ  306 (392)
Q Consensus       231 ~~g~~VlI~Ga~G~vG~~aiqlak~~~G~-~vv~~~~~~~~~~~-~~~~G~~--~vi~~~~~~~~~~~~~~D~vid~~G~  306 (392)
                      -.|.+|+|+| +|++|.+++..+.. .|+ +++++.++.+|.+. +++++..  .+++.  ++..+..+++|+||+|++.
T Consensus       139 l~~~~vlVlG-aGg~g~aia~~L~~-~G~~~V~v~nR~~~ka~~la~~~~~~~~~~~~~--~~~~~~~~~aDivIn~t~~  214 (297)
T 2egg_A          139 LDGKRILVIG-AGGGARGIYFSLLS-TAAERIDMANRTVEKAERLVREGDERRSAYFSL--AEAETRLAEYDIIINTTSV  214 (297)
T ss_dssp             CTTCEEEEEC-CSHHHHHHHHHHHT-TTCSEEEEECSSHHHHHHHHHHSCSSSCCEECH--HHHHHTGGGCSEEEECSCT
T ss_pred             CCCCEEEEEC-cHHHHHHHHHHHHH-CCCCEEEEEeCCHHHHHHHHHHhhhccCceeeH--HHHHhhhccCCEEEECCCC
Confidence            3678999998 79999998888877 487 78888888887654 4566642  22221  1233334579999999872


Q ss_pred             -HH-------HHHHhcccCCeEEEEcC
Q 016265          307 -CD-------RAVKAIKEGGTVVALTG  325 (392)
Q Consensus       307 -~~-------~~~~~l~~~G~iv~~g~  325 (392)
                       ..       .....++++..++.+..
T Consensus       215 ~~~~~~~~~~i~~~~l~~~~~v~D~~y  241 (297)
T 2egg_A          215 GMHPRVEVQPLSLERLRPGVIVSDIIY  241 (297)
T ss_dssp             TCSSCCSCCSSCCTTCCTTCEEEECCC
T ss_pred             CCCCCCCCCCCCHHHcCCCCEEEEcCC
Confidence             10       11235666666666654

>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1

Probab=95.87  E-value=0.0098  Score=55.70  Aligned_cols=86  Identities=15%  Similarity=0.163  Sum_probs=64.0

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeC-CcccHHHHHhcCCcEEEeCCCCccccCCCCccEEEecCcc----
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATS-STRNLEFLKSLGADLAIDYTKDNFEDLPEKFDVVYDAIGQ----  306 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~-~~~~~~~~~~~G~~~vi~~~~~~~~~~~~~~D~vid~~G~----  306 (392)
                      .|.+|.|+| .|.+|...++.++. +|.+|++.++ +.++ +.++++|+.. .    .+..+..+..|+|+.++..    
T Consensus       145 ~g~~vgIIG-~G~IG~~~A~~l~~-~G~~V~~~d~~~~~~-~~~~~~g~~~-~----~~l~ell~~aDvVil~~p~~~~t  216 (320)
T 1gdh_A          145 DNKTLGIYG-FGSIGQALAKRAQG-FDMDIDYFDTHRASS-SDEASYQATF-H----DSLDSLLSVSQFFSLNAPSTPET  216 (320)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHT-TTCEEEEECSSCCCH-HHHHHHTCEE-C----SSHHHHHHHCSEEEECCCCCTTT
T ss_pred             CCCEEEEEC-cCHHHHHHHHHHHH-CCCEEEEECCCCcCh-hhhhhcCcEE-c----CCHHHHHhhCCEEEEeccCchHH
Confidence            578999998 99999999999997 6999999888 7665 4566677642 1    1233444467999988751    


Q ss_pred             ---H-HHHHHhcccCCeEEEEcC
Q 016265          307 ---C-DRAVKAIKEGGTVVALTG  325 (392)
Q Consensus       307 ---~-~~~~~~l~~~G~iv~~g~  325 (392)
                         + ...++.+++++.++.++.
T Consensus       217 ~~~i~~~~l~~mk~gailIn~ar  239 (320)
T 1gdh_A          217 RYFFNKATIKSLPQGAIVVNTAR  239 (320)
T ss_dssp             TTCBSHHHHTTSCTTEEEEECSC
T ss_pred             HhhcCHHHHhhCCCCcEEEECCC
Confidence               2 457788999888887754

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=95.86  E-value=0.042  Score=48.95  Aligned_cols=100  Identities=13%  Similarity=0.039  Sum_probs=68.7

Q ss_pred             HHHHHhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCC-cEEEeCCCCccccCCCCccEE
Q 016265          222 YEGLERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGA-DLAIDYTKDNFEDLPEKFDVV  300 (392)
Q Consensus       222 ~~al~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~-~~vi~~~~~~~~~~~~~~D~v  300 (392)
                      ...+......++++||-+| +| .|..+..+++...+.+++.++.++..++.+++... -.++..+-..+. ..+.||+|
T Consensus        23 ~~l~~~~~~~~~~~vLdiG-~G-~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~-~~~~fD~v   99 (259)
T 2p35_A           23 RDLLAQVPLERVLNGYDLG-CG-PGNSTELLTDRYGVNVITGIDSDDDMLEKAADRLPNTNFGKADLATWK-PAQKADLL   99 (259)
T ss_dssp             HHHHTTCCCSCCSSEEEET-CT-TTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHHSTTSEEEECCTTTCC-CSSCEEEE
T ss_pred             HHHHHhcCCCCCCEEEEec-Cc-CCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCCCcEEEECChhhcC-ccCCcCEE
Confidence            3444566778899999997 54 68888888886337789999999998888876532 122322222222 34579999


Q ss_pred             EecCc---------cHHHHHHhcccCCeEEEEc
Q 016265          301 YDAIG---------QCDRAVKAIKEGGTVVALT  324 (392)
Q Consensus       301 id~~G---------~~~~~~~~l~~~G~iv~~g  324 (392)
                      +....         .+..+.++|+|||+++...
T Consensus       100 ~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~  132 (259)
T 2p35_A          100 YANAVFQWVPDHLAVLSQLMDQLESGGVLAVQM  132 (259)
T ss_dssp             EEESCGGGSTTHHHHHHHHGGGEEEEEEEEEEE
T ss_pred             EEeCchhhCCCHHHHHHHHHHhcCCCeEEEEEe
Confidence            97542         1467778999999988753

>1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A

Probab=95.86  E-value=0.018  Score=51.31  Aligned_cols=73  Identities=19%  Similarity=0.241  Sum_probs=48.5

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHH-HhcC---CcEEE--eCCCCc-cccC-------CCCc
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFL-KSLG---ADLAI--DYTKDN-FEDL-------PEKF  297 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~-~~~G---~~~vi--~~~~~~-~~~~-------~~~~  297 (392)
                      .+.+++|+||+|++|...++.+.. .|++|+++++++++.+.+ +++.   .-.++  |..+.. +.+.       .+++
T Consensus         5 ~~k~vlVtGasggiG~~~a~~l~~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   83 (251)
T 1zk4_A            5 DGKVAIITGGTLGIGLAIATKFVE-EGAKVMITGRHSDVGEKAAKSVGTPDQIQFFQHDSSDEDGWTKLFDATEKAFGPV   83 (251)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHHHHSSC
T ss_pred             CCcEEEEeCCCChHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHHhhccCceEEEECCCCCHHHHHHHHHHHHHHhCCC
Confidence            478999999999999998877766 499999999887766544 2332   11222  322211 1111       1368


Q ss_pred             cEEEecCc
Q 016265          298 DVVYDAIG  305 (392)
Q Consensus       298 D~vid~~G  305 (392)
                      |++|.+.|
T Consensus        84 d~li~~Ag   91 (251)
T 1zk4_A           84 STLVNNAG   91 (251)
T ss_dssp             CEEEECCC
T ss_pred             CEEEECCC
Confidence            99999876

>2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens}

Probab=95.85  E-value=0.025  Score=50.75  Aligned_cols=42  Identities=19%  Similarity=0.119  Sum_probs=34.8

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHH
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFL  274 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~  274 (392)
                      .+.+|||+||+|++|...+..+.. .|++|++++++.++.+.+
T Consensus         6 ~~k~vlITGasggiG~~la~~l~~-~G~~V~~~~r~~~~~~~~   47 (264)
T 2pd6_A            6 RSALALVTGAGSGIGRAVSVRLAG-EGATVAACDLDRAAAQET   47 (264)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHH-TTCEEEEEESSHHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHH-CCCEEEEEeCChHHHHHH
Confidence            467999999999999998877666 499999999887776554

>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans}

Probab=95.85  E-value=0.02  Score=51.32  Aligned_cols=73  Identities=16%  Similarity=0.286  Sum_probs=48.5

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHH----HhcCCcE-EE--eCCCCc-cccC-------CCC
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFL----KSLGADL-AI--DYTKDN-FEDL-------PEK  296 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~----~~~G~~~-vi--~~~~~~-~~~~-------~~~  296 (392)
                      .+.+|||+||+|++|...+..+.. .|++|+++++++++.+.+    ++.+... .+  |..+.. +.+.       .++
T Consensus        12 ~~k~vlItGasggiG~~la~~l~~-~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   90 (260)
T 3awd_A           12 DNRVAIVTGGAQNIGLACVTALAE-AGARVIIADLDEAMATKAVEDLRMEGHDVSSVVMDVTNTESVQNAVRSVHEQEGR   90 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence            478999999999999998887766 499999999887665433    3334332 22  322211 1111       136


Q ss_pred             ccEEEecCc
Q 016265          297 FDVVYDAIG  305 (392)
Q Consensus       297 ~D~vid~~G  305 (392)
                      +|++|.+.|
T Consensus        91 id~vi~~Ag   99 (260)
T 3awd_A           91 VDILVACAG   99 (260)
T ss_dssp             CCEEEECCC
T ss_pred             CCEEEECCC
Confidence            899999876

>3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus}

Probab=95.85  E-value=0.023  Score=50.02  Aligned_cols=71  Identities=23%  Similarity=0.319  Sum_probs=48.1

Q ss_pred             CeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHH-hcCCcE---EEeCCCCc-----cccCCCCccEEEecC
Q 016265          234 KSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLK-SLGADL---AIDYTKDN-----FEDLPEKFDVVYDAI  304 (392)
Q Consensus       234 ~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~-~~G~~~---vi~~~~~~-----~~~~~~~~D~vid~~  304 (392)
                      ++|||+||+|++|.+.+..+.. .|++|+++++++++++.+. +++...   ..|..+..     +.+..+.+|++|++.
T Consensus         2 k~vlVTGas~gIG~~~a~~l~~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~d~lv~~A   80 (230)
T 3guy_A            2 SLIVITGASSGLGAELAKLYDA-EGKATYLTGRSESKLSTVTNCLSNNVGYRARDLASHQEVEQLFEQLDSIPSTVVHSA   80 (230)
T ss_dssp             -CEEEESTTSHHHHHHHHHHHH-TTCCEEEEESCHHHHHHHHHTCSSCCCEEECCTTCHHHHHHHHHSCSSCCSEEEECC
T ss_pred             CEEEEecCCchHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHHHhhccCeEeecCCCHHHHHHHHHHHhhcCCEEEEeC
Confidence            3699999999999998877766 4999999999988877664 443221   12333221     122234459999987


Q ss_pred             c
Q 016265          305 G  305 (392)
Q Consensus       305 G  305 (392)
                      |
T Consensus        81 g   81 (230)
T 3guy_A           81 G   81 (230)
T ss_dssp             C
T ss_pred             C
Confidence            6

>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B

Probab=95.83  E-value=0.013  Score=55.53  Aligned_cols=87  Identities=22%  Similarity=0.290  Sum_probs=62.8

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHHH-HhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCCccccCCCCccEEEecCcc---
Q 016265          231 SAGKSILVLNGSGGVGSLVIQLAK-QVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFEDLPEKFDVVYDAIGQ---  306 (392)
Q Consensus       231 ~~g~~VlI~Ga~G~vG~~aiqlak-~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~~~~~~~D~vid~~G~---  306 (392)
                      -.|.+|.|+| .|.+|...++.++ . +|.+|++.+++.++.+.+.++|+..+     .+..+..+..|+|+.++..   
T Consensus       161 l~g~~vgIIG-~G~IG~~vA~~l~~~-~G~~V~~~d~~~~~~~~~~~~g~~~~-----~~l~ell~~aDvVil~vp~~~~  233 (348)
T 2w2k_A          161 PRGHVLGAVG-LGAIQKEIARKAVHG-LGMKLVYYDVAPADAETEKALGAERV-----DSLEELARRSDCVSVSVPYMKL  233 (348)
T ss_dssp             STTCEEEEEC-CSHHHHHHHHHHHHT-TCCEEEEECSSCCCHHHHHHHTCEEC-----SSHHHHHHHCSEEEECCCCSGG
T ss_pred             CCCCEEEEEE-ECHHHHHHHHHHHHh-cCCEEEEECCCCcchhhHhhcCcEEe-----CCHHHHhccCCEEEEeCCCChH
Confidence            3578999998 9999999999998 7 69999999888777776666775422     1233333467888888641   


Q ss_pred             ----H-HHHHHhcccCCeEEEEc
Q 016265          307 ----C-DRAVKAIKEGGTVVALT  324 (392)
Q Consensus       307 ----~-~~~~~~l~~~G~iv~~g  324 (392)
                          + ...++.++++..++.++
T Consensus       234 t~~li~~~~l~~mk~gailin~s  256 (348)
T 2w2k_A          234 THHLIDEAFFAAMKPGSRIVNTA  256 (348)
T ss_dssp             GTTCBCHHHHHHSCTTEEEEECS
T ss_pred             HHHHhhHHHHhcCCCCCEEEECC
Confidence                1 35667788877776654

>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti}

Probab=95.82  E-value=0.028  Score=51.31  Aligned_cols=73  Identities=18%  Similarity=0.262  Sum_probs=46.5

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeC-CcccHHHH----Hhc-CCcEE-E--eCCCCc-ccc-------CC
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATS-STRNLEFL----KSL-GADLA-I--DYTKDN-FED-------LP  294 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~-~~~~~~~~----~~~-G~~~v-i--~~~~~~-~~~-------~~  294 (392)
                      .|+++||+||+|++|.+.+..+.. .|++|+++++ +.++++.+    ++. +.... +  |..+.. +.+       .-
T Consensus        24 ~~k~~lVTGas~GIG~~ia~~la~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~  102 (281)
T 3v2h_A           24 MTKTAVITGSTSGIGLAIARTLAK-AGANIVLNGFGAPDEIRTVTDEVAGLSSGTVLHHPADMTKPSEIADMMAMVADRF  102 (281)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHH-TTCEEEEECCCCHHHHHHHHHHHHTTCSSCEEEECCCTTCHHHHHHHHHHHHHHT
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHH-CCCEEEEEeCCChHHHHHHHHHHhhccCCcEEEEeCCCCCHHHHHHHHHHHHHHC
Confidence            478999999999999997776666 4999999887 44444433    222 32222 2  222211 111       12


Q ss_pred             CCccEEEecCc
Q 016265          295 EKFDVVYDAIG  305 (392)
Q Consensus       295 ~~~D~vid~~G  305 (392)
                      +++|++|++.|
T Consensus       103 g~iD~lv~nAg  113 (281)
T 3v2h_A          103 GGADILVNNAG  113 (281)
T ss_dssp             SSCSEEEECCC
T ss_pred             CCCCEEEECCC
Confidence            47999999877

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=95.81  E-value=0.05  Score=46.97  Aligned_cols=92  Identities=18%  Similarity=0.117  Sum_probs=65.7

Q ss_pred             CCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcE--EEeCCCCccccCCCCccEEEecCc-
Q 016265          229 GFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADL--AIDYTKDNFEDLPEKFDVVYDAIG-  305 (392)
Q Consensus       229 ~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~--vi~~~~~~~~~~~~~~D~vid~~G-  305 (392)
                      .+.++.+||-+| +|. |..+..+++.  |.+++.++.++..++.+++.|...  ++..+-..+ ...+.+|+|+.... 
T Consensus        43 ~~~~~~~vLdiG-~G~-G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~d~~~~-~~~~~~D~v~~~~~l  117 (218)
T 3ou2_A           43 AGNIRGDVLELA-SGT-GYWTRHLSGL--ADRVTALDGSAEMIAEAGRHGLDNVEFRQQDLFDW-TPDRQWDAVFFAHWL  117 (218)
T ss_dssp             TTTSCSEEEEES-CTT-SHHHHHHHHH--SSEEEEEESCHHHHHHHGGGCCTTEEEEECCTTSC-CCSSCEEEEEEESCG
T ss_pred             cCCCCCeEEEEC-CCC-CHHHHHHHhc--CCeEEEEeCCHHHHHHHHhcCCCCeEEEecccccC-CCCCceeEEEEechh
Confidence            477888999997 554 8888888875  889999999999999888866322  222222222 23457999996532 


Q ss_pred             ----------cHHHHHHhcccCCeEEEEcC
Q 016265          306 ----------QCDRAVKAIKEGGTVVALTG  325 (392)
Q Consensus       306 ----------~~~~~~~~l~~~G~iv~~g~  325 (392)
                                .+..+.+.|++||+++....
T Consensus       118 ~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  147 (218)
T 3ou2_A          118 AHVPDDRFEAFWESVRSAVAPGGVVEFVDV  147 (218)
T ss_dssp             GGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             hcCCHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence                      14677889999999987743

>3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A*

Probab=95.81  E-value=0.016  Score=51.80  Aligned_cols=73  Identities=23%  Similarity=0.332  Sum_probs=48.1

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCC-cccHHHH----HhcCCcE-EE--eCCCCc-cccC-------CC
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSS-TRNLEFL----KSLGADL-AI--DYTKDN-FEDL-------PE  295 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~-~~~~~~~----~~~G~~~-vi--~~~~~~-~~~~-------~~  295 (392)
                      .|.+|||+||+|++|...+..+.. .|++|++++++ .++.+.+    +..|... .+  |..+.. +.+.       .+
T Consensus         6 ~~k~vlVTGasggiG~~~a~~l~~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g   84 (258)
T 3afn_B            6 KGKRVLITGSSQGIGLATARLFAR-AGAKVGLHGRKAPANIDETIASMRADGGDAAFFAADLATSEACQQLVDEFVAKFG   84 (258)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHH-TTCEEEEEESSCCTTHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHH-CCCEEEEECCCchhhHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            467999999999999998877766 49999999887 6665543    2234322 22  322211 1111       13


Q ss_pred             CccEEEecCc
Q 016265          296 KFDVVYDAIG  305 (392)
Q Consensus       296 ~~D~vid~~G  305 (392)
                      ++|++|.+.|
T Consensus        85 ~id~vi~~Ag   94 (258)
T 3afn_B           85 GIDVLINNAG   94 (258)
T ss_dssp             SCSEEEECCC
T ss_pred             CCCEEEECCC
Confidence            7999999876

>3uce_A Dehydrogenase; rossmann fold, oxidoreductase; HET: NDP; 1.80A {Vibrio vulnificus}

Probab=95.81  E-value=0.006  Score=53.67  Aligned_cols=36  Identities=19%  Similarity=0.250  Sum_probs=29.3

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCc
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSST  268 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~  268 (392)
                      .++++||+||+|++|.+.++.... .|++|++++++.
T Consensus         5 ~~k~vlVTGas~gIG~~~a~~l~~-~G~~V~~~~r~~   40 (223)
T 3uce_A            5 DKTVYVVLGGTSGIGAELAKQLES-EHTIVHVASRQT   40 (223)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHCS-TTEEEEEESGGG
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHH-CCCEEEEecCCc
Confidence            467899999999999998877655 499888887653

>2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D

Probab=95.80  E-value=0.011  Score=53.65  Aligned_cols=90  Identities=20%  Similarity=0.241  Sum_probs=59.8

Q ss_pred             eEEEEcCCCcHHHHHHHHHHHhc--CCeEEEEeCCcccHHHHHhcCCcEE-EeCCC-CccccCCCCccEEEecCcc----
Q 016265          235 SILVLNGSGGVGSLVIQLAKQVF--GASRVAATSSTRNLEFLKSLGADLA-IDYTK-DNFEDLPEKFDVVYDAIGQ----  306 (392)
Q Consensus       235 ~VlI~Ga~G~vG~~aiqlak~~~--G~~vv~~~~~~~~~~~~~~~G~~~v-i~~~~-~~~~~~~~~~D~vid~~G~----  306 (392)
                      +|||+||+|.+|...++.+.. .  |.+|++++++..+.+.+...+...+ .|..+ +.+.+..+++|+||.+.+.    
T Consensus         2 ~ilVtGatG~iG~~l~~~L~~-~~~g~~V~~~~r~~~~~~~l~~~~~~~~~~D~~d~~~l~~~~~~~d~vi~~a~~~~~~   80 (287)
T 2jl1_A            2 SIAVTGATGQLGGLVIQHLLK-KVPASQIIAIVRNVEKASTLADQGVEVRHGDYNQPESLQKAFAGVSKLLFISGPHYDN   80 (287)
T ss_dssp             CEEETTTTSHHHHHHHHHHTT-TSCGGGEEEEESCTTTTHHHHHTTCEEEECCTTCHHHHHHHTTTCSEEEECCCCCSCH
T ss_pred             eEEEEcCCchHHHHHHHHHHH-hCCCCeEEEEEcCHHHHhHHhhcCCeEEEeccCCHHHHHHHHhcCCEEEEcCCCCcCc
Confidence            699999999999998877655 4  7889999988777665555554432 23333 2233445689999998762    


Q ss_pred             ------HHHHHHhcccC--CeEEEEcC
Q 016265          307 ------CDRAVKAIKEG--GTVVALTG  325 (392)
Q Consensus       307 ------~~~~~~~l~~~--G~iv~~g~  325 (392)
                            ...++++++..  +++|.++.
T Consensus        81 ~~n~~~~~~l~~a~~~~~~~~~v~~Ss  107 (287)
T 2jl1_A           81 TLLIVQHANVVKAARDAGVKHIAYTGY  107 (287)
T ss_dssp             HHHHHHHHHHHHHHHHTTCSEEEEEEE
T ss_pred             hHHHHHHHHHHHHHHHcCCCEEEEECC
Confidence                  13344444443  47887754

>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*

Probab=95.80  E-value=0.014  Score=52.08  Aligned_cols=73  Identities=23%  Similarity=0.382  Sum_probs=48.6

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHH----HhcCCcE-EE--eCCCCc-cccC-------CCC
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFL----KSLGADL-AI--DYTKDN-FEDL-------PEK  296 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~----~~~G~~~-vi--~~~~~~-~~~~-------~~~  296 (392)
                      .|.+|||+||+|++|...++.+.. .|++|+++++++++.+.+    ++.+... .+  |..+.. +.+.       ..+
T Consensus        10 ~~~~vlVtGasggiG~~la~~l~~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   88 (255)
T 1fmc_A           10 DGKCAIITGAGAGIGKEIAITFAT-AGASVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFAISKLGK   88 (255)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHT-TTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred             CCCEEEEECCccHHHHHHHHHHHH-CCCEEEEEcCCHHHHHHHHHHHHHhCCceEEEEcCCCCHHHHHHHHHHHHHhcCC
Confidence            478999999999999998877666 499999999887765433    2334332 22  322211 1111       137


Q ss_pred             ccEEEecCc
Q 016265          297 FDVVYDAIG  305 (392)
Q Consensus       297 ~D~vid~~G  305 (392)
                      +|++|.+.|
T Consensus        89 ~d~vi~~Ag   97 (255)
T 1fmc_A           89 VDILVNNAG   97 (255)
T ss_dssp             CCEEEECCC
T ss_pred             CCEEEECCC
Confidence            999999876

>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A*

Probab=95.79  E-value=0.022  Score=51.18  Aligned_cols=73  Identities=21%  Similarity=0.264  Sum_probs=48.8

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHH----HhcCCcE-EE--eCCCC-ccccC-------CCC
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFL----KSLGADL-AI--DYTKD-NFEDL-------PEK  296 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~----~~~G~~~-vi--~~~~~-~~~~~-------~~~  296 (392)
                      .|.++||+||+|++|.+.++.+.. .|++|+++++++++++.+    ++.|... .+  |..+. .+.+.       .++
T Consensus        13 ~~k~vlVTGas~gIG~~ia~~l~~-~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~   91 (260)
T 2zat_A           13 ENKVALVTASTDGIGLAIARRLAQ-DGAHVVVSSRKQENVDRTVATLQGEGLSVTGTVCHVGKAEDRERLVAMAVNLHGG   91 (260)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            578999999999999998877766 499999999887765433    2334332 22  32221 11111       237


Q ss_pred             ccEEEecCc
Q 016265          297 FDVVYDAIG  305 (392)
Q Consensus       297 ~D~vid~~G  305 (392)
                      +|++|++.|
T Consensus        92 iD~lv~~Ag  100 (260)
T 2zat_A           92 VDILVSNAA  100 (260)
T ss_dssp             CCEEEECCC
T ss_pred             CCEEEECCC
Confidence            899999876

>1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex, oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi} SCOP: c.2.1.2 PDB: 1mxf_A*

Probab=95.79  E-value=0.021  Score=51.83  Aligned_cols=42  Identities=17%  Similarity=0.143  Sum_probs=33.9

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeC-CcccHHHH
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATS-STRNLEFL  274 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~-~~~~~~~~  274 (392)
                      .|.++||+||+|++|.+.+..+.. .|++|+++++ ++++.+.+
T Consensus        10 ~~k~~lVTGas~gIG~~ia~~l~~-~G~~V~~~~r~~~~~~~~~   52 (276)
T 1mxh_A           10 ECPAAVITGGARRIGHSIAVRLHQ-QGFRVVVHYRHSEGAAQRL   52 (276)
T ss_dssp             -CCEEEETTCSSHHHHHHHHHHHH-TTCEEEEEESSCHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHH-CCCEEEEEeCCChHHHHHH
Confidence            468999999999999998877666 4999999998 77665543

>4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli}

Probab=95.77  E-value=0.016  Score=55.23  Aligned_cols=84  Identities=19%  Similarity=0.294  Sum_probs=63.8

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCCccccCCCCccEEEecCcc-----
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFEDLPEKFDVVYDAIGQ-----  306 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~~~~~~~D~vid~~G~-----  306 (392)
                      .|.+|.|+| .|.+|...++.++. +|.+|++.+++. +.+.+.+.|+..      .++.++.+..|+|+-++..     
T Consensus       175 ~gktvGIIG-lG~IG~~vA~~l~~-fG~~V~~~d~~~-~~~~~~~~g~~~------~~l~ell~~aDvV~l~~Plt~~T~  245 (365)
T 4hy3_A          175 AGSEIGIVG-FGDLGKALRRVLSG-FRARIRVFDPWL-PRSMLEENGVEP------ASLEDVLTKSDFIFVVAAVTSENK  245 (365)
T ss_dssp             SSSEEEEEC-CSHHHHHHHHHHTT-SCCEEEEECSSS-CHHHHHHTTCEE------CCHHHHHHSCSEEEECSCSSCC--
T ss_pred             CCCEEEEec-CCcccHHHHHhhhh-CCCEEEEECCCC-CHHHHhhcCeee------CCHHHHHhcCCEEEEcCcCCHHHH
Confidence            378999998 99999999999998 699999888764 455566677642      1344445578999987541     


Q ss_pred             --H-HHHHHhcccCCeEEEEc
Q 016265          307 --C-DRAVKAIKEGGTVVALT  324 (392)
Q Consensus       307 --~-~~~~~~l~~~G~iv~~g  324 (392)
                        + ...+..|++++.+|.++
T Consensus       246 ~li~~~~l~~mk~gailIN~a  266 (365)
T 4hy3_A          246 RFLGAEAFSSMRRGAAFILLS  266 (365)
T ss_dssp             -CCCHHHHHTSCTTCEEEECS
T ss_pred             hhcCHHHHhcCCCCcEEEECc
Confidence              2 67888899999988775

>1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A*

Probab=95.77  E-value=0.021  Score=51.33  Aligned_cols=73  Identities=22%  Similarity=0.330  Sum_probs=48.1

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCccc-HHHHH-hc----CCcE-EE--eCCCCc-cccC-------C
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRN-LEFLK-SL----GADL-AI--DYTKDN-FEDL-------P  294 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~-~~~~~-~~----G~~~-vi--~~~~~~-~~~~-------~  294 (392)
                      .|.++||+||+|++|...++.+.. .|++|+++++++++ .+.+. ++    |... .+  |..+.. +.+.       -
T Consensus         3 ~~k~vlVTGas~gIG~~ia~~l~~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~   81 (260)
T 1x1t_A            3 KGKVAVVTGSTSGIGLGIATALAA-QGADIVLNGFGDAAEIEKVRAGLAAQHGVKVLYDGADLSKGEAVRGLVDNAVRQM   81 (260)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHH-TTCEEEEECCSCHHHHHHHHHHHHHHHTSCEEEECCCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHH-cCCEEEEEeCCcchHHHHHHHHHHhccCCcEEEEECCCCCHHHHHHHHHHHHHhc
Confidence            468999999999999998877766 49999999887766 44332 22    5332 22  322211 1111       1


Q ss_pred             CCccEEEecCc
Q 016265          295 EKFDVVYDAIG  305 (392)
Q Consensus       295 ~~~D~vid~~G  305 (392)
                      +++|++|++.|
T Consensus        82 g~iD~lv~~Ag   92 (260)
T 1x1t_A           82 GRIDILVNNAG   92 (260)
T ss_dssp             SCCSEEEECCC
T ss_pred             CCCCEEEECCC
Confidence            37899999876

>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans}

Probab=95.77  E-value=0.022  Score=51.99  Aligned_cols=42  Identities=24%  Similarity=0.238  Sum_probs=34.7

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHH
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFL  274 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~  274 (392)
                      .|.++||+||+|++|.+.++.... .|++|+++++++++.+.+
T Consensus        10 ~~k~vlVTGas~gIG~aia~~l~~-~G~~V~~~~r~~~~~~~~   51 (281)
T 3svt_A           10 QDRTYLVTGGGSGIGKGVAAGLVA-AGASVMIVGRNPDKLAGA   51 (281)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHH
Confidence            478999999999999998776666 499999999887765543

>1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A*

Probab=95.76  E-value=0.031  Score=50.40  Aligned_cols=73  Identities=26%  Similarity=0.362  Sum_probs=47.1

Q ss_pred             CCCeEEEEcCC--CcHHHHHHHHHHHhcCCeEEEEeCCcc---cHHHHH-hcCCcEEE--eCCCCc-ccc-------CCC
Q 016265          232 AGKSILVLNGS--GGVGSLVIQLAKQVFGASRVAATSSTR---NLEFLK-SLGADLAI--DYTKDN-FED-------LPE  295 (392)
Q Consensus       232 ~g~~VlI~Ga~--G~vG~~aiqlak~~~G~~vv~~~~~~~---~~~~~~-~~G~~~vi--~~~~~~-~~~-------~~~  295 (392)
                      .|.++||+||+  |++|.+.++.+.. .|++|+++++++.   ..+.+. +.|....+  |..+.. +.+       .-+
T Consensus         8 ~~k~vlVTGas~~~gIG~~ia~~l~~-~G~~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g   86 (265)
T 1qsg_A            8 SGKRILVTGVASKLSIAYGIAQAMHR-EGAELAFTYQNDKLKGRVEEFAAQLGSDIVLQCDVAEDASIDTMFAELGKVWP   86 (265)
T ss_dssp             TTCEEEECCCCSTTSHHHHHHHHHHH-TTCEEEEEESSTTTHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHTTCS
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHH-CCCEEEEEcCcHHHHHHHHHHHHhcCCcEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            47899999998  9999998877666 4999999988762   233332 23433333  333321 111       123


Q ss_pred             CccEEEecCc
Q 016265          296 KFDVVYDAIG  305 (392)
Q Consensus       296 ~~D~vid~~G  305 (392)
                      ++|++|++.|
T Consensus        87 ~iD~lv~~Ag   96 (265)
T 1qsg_A           87 KFDGFVHSIG   96 (265)
T ss_dssp             SEEEEEECCC
T ss_pred             CCCEEEECCC
Confidence            7899999876

>4h15_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, nysgrc; HET: MSE; 1.45A {Sinorhizobium meliloti} PDB: 4h16_A*

Probab=95.76  E-value=0.018  Score=52.28  Aligned_cols=37  Identities=24%  Similarity=0.461  Sum_probs=31.5

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcc
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTR  269 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~  269 (392)
                      .|+++||+||++++|++.++.... .|++|+++.++.+
T Consensus        10 ~GK~alVTGas~GIG~aia~~la~-~Ga~V~~~~r~~~   46 (261)
T 4h15_A           10 RGKRALITAGTKGAGAATVSLFLE-LGAQVLTTARARP   46 (261)
T ss_dssp             TTCEEEESCCSSHHHHHHHHHHHH-TTCEEEEEESSCC
T ss_pred             CCCEEEEeccCcHHHHHHHHHHHH-cCCEEEEEECCch
Confidence            689999999999999997776666 4999999988644

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=95.76  E-value=0.0049  Score=54.96  Aligned_cols=92  Identities=15%  Similarity=0.219  Sum_probs=61.5

Q ss_pred             CCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCC----cE-EEeCCCCcc-ccC-CCCccEE-
Q 016265          229 GFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGA----DL-AIDYTKDNF-EDL-PEKFDVV-  300 (392)
Q Consensus       229 ~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~----~~-vi~~~~~~~-~~~-~~~~D~v-  300 (392)
                      ...+|.+||-+| +| .|..+..+++. .+.++++++.+++-++.+++...    .. ++..+-... ... .+.||.| 
T Consensus        57 ~~~~G~rVLdiG-~G-~G~~~~~~~~~-~~~~v~~id~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~FD~i~  133 (236)
T 3orh_A           57 ASSKGGRVLEVG-FG-MAIAASKVQEA-PIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGIL  133 (236)
T ss_dssp             HTTTCEEEEEEC-CT-TSHHHHHHTTS-CEEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEE
T ss_pred             hccCCCeEEEEC-CC-ccHHHHHHHHh-CCcEEEEEeCCHHHHHHHHHHHhhCCCceEEEeehHHhhcccccccCCceEE
Confidence            357899999998 54 58888888886 47788899999988888876432    11 222211111 112 3468887 


Q ss_pred             EecCc------c-------HHHHHHhcccCCeEEEE
Q 016265          301 YDAIG------Q-------CDRAVKAIKEGGTVVAL  323 (392)
Q Consensus       301 id~~G------~-------~~~~~~~l~~~G~iv~~  323 (392)
                      +|+..      .       ++.+.++|+|||+++.+
T Consensus       134 ~D~~~~~~~~~~~~~~~~~~~e~~rvLkPGG~l~f~  169 (236)
T 3orh_A          134 YDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYC  169 (236)
T ss_dssp             ECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEEC
T ss_pred             EeeeecccchhhhcchhhhhhhhhheeCCCCEEEEE
Confidence            45532      1       35688899999999865

>3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae}

Probab=95.75  E-value=0.027  Score=51.71  Aligned_cols=73  Identities=23%  Similarity=0.348  Sum_probs=47.1

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCC---eEEEEeCCcccHHHHHh-c-----CCcE-EE--eCCCCc-ccc----C-
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGA---SRVAATSSTRNLEFLKS-L-----GADL-AI--DYTKDN-FED----L-  293 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~---~vv~~~~~~~~~~~~~~-~-----G~~~-vi--~~~~~~-~~~----~-  293 (392)
                      .|+++||+||+|++|.+.+...... |+   +|+++.++.++++.+.+ +     |... .+  |..+.. +.+    . 
T Consensus        32 ~~k~~lVTGas~GIG~aia~~l~~~-G~~~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~  110 (287)
T 3rku_A           32 AKKTVLITGASAGIGKATALEYLEA-SNGDMKLILAARRLEKLEELKKTIDQEFPNAKVHVAQLDITQAEKIKPFIENLP  110 (287)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHH-HTTCSEEEEEESCHHHHHHHHHHHHHHCTTCEEEEEECCTTCGGGHHHHHHTSC
T ss_pred             CCCEEEEecCCChHHHHHHHHHHHc-CCCCceEEEEECCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHH
Confidence            4789999999999999877554442 66   88898888877665432 1     3322 22  333221 111    1 


Q ss_pred             --CCCccEEEecCc
Q 016265          294 --PEKFDVVYDAIG  305 (392)
Q Consensus       294 --~~~~D~vid~~G  305 (392)
                        -+++|++|++.|
T Consensus       111 ~~~g~iD~lVnnAG  124 (287)
T 3rku_A          111 QEFKDIDILVNNAG  124 (287)
T ss_dssp             GGGCSCCEEEECCC
T ss_pred             HhcCCCCEEEECCC
Confidence              237999999876

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=95.74  E-value=0.025  Score=48.71  Aligned_cols=92  Identities=18%  Similarity=0.219  Sum_probs=62.2

Q ss_pred             CCCCCeEEEEcCCCcHHHHHHHHHHHhcCC-eEEEEeCCcccHHHHHhcCCc----EEEeCCCCccccCCCCccEEEecC
Q 016265          230 FSAGKSILVLNGSGGVGSLVIQLAKQVFGA-SRVAATSSTRNLEFLKSLGAD----LAIDYTKDNFEDLPEKFDVVYDAI  304 (392)
Q Consensus       230 ~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~-~vv~~~~~~~~~~~~~~~G~~----~vi~~~~~~~~~~~~~~D~vid~~  304 (392)
                      +.++++||-+| +|. |..+..+++.  |. +++.++.++..++.+++....    .++..+-.......+.+|+|+...
T Consensus        40 ~~~~~~vLdiG-cG~-G~~~~~l~~~--~~~~v~~~D~s~~~~~~a~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~  115 (215)
T 2pxx_A           40 LRPEDRILVLG-CGN-SALSYELFLG--GFPNVTSVDYSSVVVAAMQACYAHVPQLRWETMDVRKLDFPSASFDVVLEKG  115 (215)
T ss_dssp             CCTTCCEEEET-CTT-CSHHHHHHHT--TCCCEEEEESCHHHHHHHHHHTTTCTTCEEEECCTTSCCSCSSCEEEEEEES
T ss_pred             cCCCCeEEEEC-CCC-cHHHHHHHHc--CCCcEEEEeCCHHHHHHHHHhcccCCCcEEEEcchhcCCCCCCcccEEEECc
Confidence            57889999998 665 8888888875  54 899999999888888764321    222222222211134699999631


Q ss_pred             c------------------------cHHHHHHhcccCCeEEEEcC
Q 016265          305 G------------------------QCDRAVKAIKEGGTVVALTG  325 (392)
Q Consensus       305 G------------------------~~~~~~~~l~~~G~iv~~g~  325 (392)
                      .                        .+..+.++|++||+++....
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~  160 (215)
T 2pxx_A          116 TLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTS  160 (215)
T ss_dssp             HHHHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEES
T ss_pred             chhhhccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeC
Confidence            0                        24677889999999987653

>3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold, short-chain dehydrogenase/reducta ALLO-threonine dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A*

Probab=95.73  E-value=0.023  Score=50.80  Aligned_cols=71  Identities=24%  Similarity=0.332  Sum_probs=47.8

Q ss_pred             CeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHH-hcCCc-EEE--eCCCCc-cc----cC---CCCccEEE
Q 016265          234 KSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLK-SLGAD-LAI--DYTKDN-FE----DL---PEKFDVVY  301 (392)
Q Consensus       234 ~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~-~~G~~-~vi--~~~~~~-~~----~~---~~~~D~vi  301 (392)
                      .+++|+||+|++|.+.++.+.. .|++|+++++++++++.+. +++.. ..+  |..+.. +.    +.   -+++|++|
T Consensus         1 k~vlVTGas~gIG~aia~~l~~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD~lv   79 (248)
T 3asu_A            1 MIVLVTGATAGFGECITRRFIQ-QGHKVIATGRRQERLQELKDELGDNLYIAQLDVRNRAAIEEMLASLPAEWCNIDILV   79 (248)
T ss_dssp             CEEEETTTTSTTHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHCTTEEEEECCTTCHHHHHHHHHTSCTTTCCCCEEE
T ss_pred             CEEEEECCCChHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHHhcCceEEEEcCCCCHHHHHHHHHHHHHhCCCCCEEE
Confidence            3689999999999998877666 4999999999887766553 44432 222  333221 11    11   23789999


Q ss_pred             ecCc
Q 016265          302 DAIG  305 (392)
Q Consensus       302 d~~G  305 (392)
                      ++.|
T Consensus        80 nnAg   83 (248)
T 3asu_A           80 NNAG   83 (248)
T ss_dssp             ECCC
T ss_pred             ECCC
Confidence            9876

>3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition, oxidoreductase; HET: NAD; 2.00A {Brevibacterium saccharolyticum}

Probab=95.73  E-value=0.03  Score=50.25  Aligned_cols=72  Identities=19%  Similarity=0.259  Sum_probs=46.9

Q ss_pred             CCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCccc--HHHH----HhcCCcE-EE--eCCCCc-cccC-------CC
Q 016265          233 GKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRN--LEFL----KSLGADL-AI--DYTKDN-FEDL-------PE  295 (392)
Q Consensus       233 g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~--~~~~----~~~G~~~-vi--~~~~~~-~~~~-------~~  295 (392)
                      |.++||+||+|++|.+.++.+.. .|++|++++++.++  ++.+    ++.|... .+  |..+.. +.+.       -+
T Consensus         2 ~k~vlVTGas~gIG~~ia~~l~~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   80 (258)
T 3a28_C            2 SKVAMVTGGAQGIGRGISEKLAA-DGFDIAVADLPQQEEQAAETIKLIEAADQKAVFVGLDVTDKANFDSAIDEAAEKLG   80 (258)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHH-HTCEEEEEECGGGHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHHT
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHH-CCCEEEEEeCCcchHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence            57899999999999998776666 39999999887666  4432    2234332 22  332221 1111       23


Q ss_pred             CccEEEecCc
Q 016265          296 KFDVVYDAIG  305 (392)
Q Consensus       296 ~~D~vid~~G  305 (392)
                      ++|++|++.|
T Consensus        81 ~iD~lv~nAg   90 (258)
T 3a28_C           81 GFDVLVNNAG   90 (258)
T ss_dssp             CCCEEEECCC
T ss_pred             CCCEEEECCC
Confidence            7899999876

>3e9n_A Putative short-chain dehydrogenase/reductase; structural genomics, unknown function, oxidoreductase, PSI- 2; 2.40A {Corynebacterium glutamicum}

Probab=95.72  E-value=0.016  Score=51.63  Aligned_cols=72  Identities=15%  Similarity=0.100  Sum_probs=46.9

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCCc------cc---cCCCCccEEEe
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDN------FE---DLPEKFDVVYD  302 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~------~~---~~~~~~D~vid  302 (392)
                      .|+++||+||+|++|.+.++...  .|.+|+++++++++.+.+.+......+..+-.+      ..   +.-+++|++|+
T Consensus         4 ~~k~vlITGas~gIG~~~a~~l~--~g~~v~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~id~lv~   81 (245)
T 3e9n_A            4 KKKIAVVTGATGGMGIEIVKDLS--RDHIVYALGRNPEHLAALAEIEGVEPIESDIVKEVLEEGGVDKLKNLDHVDTLVH   81 (245)
T ss_dssp             --CEEEEESTTSHHHHHHHHHHT--TTSEEEEEESCHHHHHHHHTSTTEEEEECCHHHHHHTSSSCGGGTTCSCCSEEEE
T ss_pred             CCCEEEEEcCCCHHHHHHHHHHh--CCCeEEEEeCCHHHHHHHHhhcCCcceecccchHHHHHHHHHHHHhcCCCCEEEE
Confidence            36899999999999998877663  388899999988887777654322222221100      11   11237899999


Q ss_pred             cCc
Q 016265          303 AIG  305 (392)
Q Consensus       303 ~~G  305 (392)
                      +.|
T Consensus        82 ~Ag   84 (245)
T 3e9n_A           82 AAA   84 (245)
T ss_dssp             CC-
T ss_pred             CCC
Confidence            987

>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}

Probab=95.72  E-value=0.046  Score=49.87  Aligned_cols=94  Identities=22%  Similarity=0.233  Sum_probs=62.6

Q ss_pred             ccchhHHHHHHHHHhcCC-CCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCCccc
Q 016265          213 GLPLAIETAYEGLERTGF-SAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFE  291 (392)
Q Consensus       213 ~l~~~~~ta~~al~~~~~-~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~  291 (392)
                      .+||....+...++.... -.|.+++|+|.++.+|..+++++... |+.|.++.+....+                   .
T Consensus       140 ~~PcTp~gv~~lL~~~~i~l~Gk~vvVIG~s~iVG~p~A~lL~~~-gAtVtv~hs~t~~L-------------------~  199 (285)
T 3l07_A          140 LESCTPKGIMTMLREYGIKTEGAYAVVVGASNVVGKPVSQLLLNA-KATVTTCHRFTTDL-------------------K  199 (285)
T ss_dssp             CCCHHHHHHHHHHHHTTCCCTTCEEEEECCCTTTHHHHHHHHHHT-TCEEEEECTTCSSH-------------------H
T ss_pred             CCCCCHHHHHHHHHHhCCCCCCCEEEEECCCchhHHHHHHHHHHC-CCeEEEEeCCchhH-------------------H
Confidence            345555555566665554 47899999996666899999999884 99887765433222                   2


Q ss_pred             cCCCCccEEEecCccHH-HHHHhcccCCeEEEEcCC
Q 016265          292 DLPEKFDVVYDAIGQCD-RAVKAIKEGGTVVALTGA  326 (392)
Q Consensus       292 ~~~~~~D~vid~~G~~~-~~~~~l~~~G~iv~~g~~  326 (392)
                      +..+.+|+||.++|... ---+.+++|..++.+|..
T Consensus       200 ~~~~~ADIVI~Avg~p~~I~~~~vk~GavVIDvgi~  235 (285)
T 3l07_A          200 SHTTKADILIVAVGKPNFITADMVKEGAVVIDVGIN  235 (285)
T ss_dssp             HHHTTCSEEEECCCCTTCBCGGGSCTTCEEEECCCE
T ss_pred             HhcccCCEEEECCCCCCCCCHHHcCCCcEEEEeccc
Confidence            23346788888888321 112457888888888654

>1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent oxidoreductase (SDR family), structural genomics, PSI; 2.60A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=95.72  E-value=0.015  Score=51.57  Aligned_cols=72  Identities=17%  Similarity=0.235  Sum_probs=49.1

Q ss_pred             CCeEEEEcCCCcHHHHHHHHHHHhcC--CeEEEEeCCcccHHHHHhc-CCc-EEE--eCCCC-ccccC-------CC--C
Q 016265          233 GKSILVLNGSGGVGSLVIQLAKQVFG--ASRVAATSSTRNLEFLKSL-GAD-LAI--DYTKD-NFEDL-------PE--K  296 (392)
Q Consensus       233 g~~VlI~Ga~G~vG~~aiqlak~~~G--~~vv~~~~~~~~~~~~~~~-G~~-~vi--~~~~~-~~~~~-------~~--~  296 (392)
                      +.+|+|+||+|++|...++.+.. .|  ++|++++++.++.+.++++ +.. .++  |..+. .+.+.       .+  +
T Consensus         3 ~k~vlItGasggiG~~la~~l~~-~g~~~~V~~~~r~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~~~   81 (250)
T 1yo6_A            3 PGSVVVTGANRGIGLGLVQQLVK-DKNIRHIIATARDVEKATELKSIKDSRVHVLPLTVTCDKSLDTFVSKVGEIVGSDG   81 (250)
T ss_dssp             CSEEEESSCSSHHHHHHHHHHHT-CTTCCEEEEEESSGGGCHHHHTCCCTTEEEEECCTTCHHHHHHHHHHHHHHHGGGC
T ss_pred             CCEEEEecCCchHHHHHHHHHHh-cCCCcEEEEEecCHHHHHHHHhccCCceEEEEeecCCHHHHHHHHHHHHHhcCCCC
Confidence            67899999999999998877766 48  8999999988877766655 322 222  32221 11111       11  7


Q ss_pred             ccEEEecCc
Q 016265          297 FDVVYDAIG  305 (392)
Q Consensus       297 ~D~vid~~G  305 (392)
                      +|++|.+.|
T Consensus        82 id~li~~Ag   90 (250)
T 1yo6_A           82 LSLLINNAG   90 (250)
T ss_dssp             CCEEEECCC
T ss_pred             CcEEEECCc
Confidence            999999875

>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A*

Probab=95.70  E-value=0.008  Score=56.53  Aligned_cols=86  Identities=14%  Similarity=0.177  Sum_probs=64.7

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCCccccCCCCccEEEecCcc-----
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFEDLPEKFDVVYDAIGQ-----  306 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~~~~~~~D~vid~~G~-----  306 (392)
                      .|.+|.|+| .|.+|...++.++. +|.+|++.+++..+.+.++++|+...      ++.+..+..|+|+-++..     
T Consensus       144 ~g~tvGIIG-~G~IG~~vA~~l~~-~G~~V~~~d~~~~~~~~~~~~g~~~~------~l~ell~~aDvV~l~~P~t~~t~  215 (330)
T 4e5n_A          144 DNATVGFLG-MGAIGLAMADRLQG-WGATLQYHEAKALDTQTEQRLGLRQV------ACSELFASSDFILLALPLNADTL  215 (330)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHTTT-SCCEEEEECSSCCCHHHHHHHTEEEC------CHHHHHHHCSEEEECCCCSTTTT
T ss_pred             CCCEEEEEe-eCHHHHHHHHHHHH-CCCEEEEECCCCCcHhHHHhcCceeC------CHHHHHhhCCEEEEcCCCCHHHH
Confidence            478999998 99999999999998 69999999888766666777775321      233444467888887651     


Q ss_pred             --H-HHHHHhcccCCeEEEEcC
Q 016265          307 --C-DRAVKAIKEGGTVVALTG  325 (392)
Q Consensus       307 --~-~~~~~~l~~~G~iv~~g~  325 (392)
                        + ...++.|+++..+|.++.
T Consensus       216 ~li~~~~l~~mk~gailIN~ar  237 (330)
T 4e5n_A          216 HLVNAELLALVRPGALLVNPCR  237 (330)
T ss_dssp             TCBCHHHHTTSCTTEEEEECSC
T ss_pred             HHhCHHHHhhCCCCcEEEECCC
Confidence              2 577888888888887753

>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A*

Probab=95.70  E-value=0.023  Score=51.73  Aligned_cols=73  Identities=15%  Similarity=0.247  Sum_probs=49.0

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHH-H----hcCCcE-EE--eCCCCc-ccc-------CCC
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFL-K----SLGADL-AI--DYTKDN-FED-------LPE  295 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~-~----~~G~~~-vi--~~~~~~-~~~-------~~~  295 (392)
                      .|+++||+||+|++|.+.++.... .|++|++++++.++.+.+ +    ..|... .+  |..+.. +.+       .-+
T Consensus        26 ~~k~~lVTGas~GIG~aia~~l~~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g  104 (277)
T 4fc7_A           26 RDKVAFITGGGSGIGFRIAEIFMR-HGCHTVIASRSLPRVLTAARKLAGATGRRCLPLSMDVRAPPAVMAAVDQALKEFG  104 (277)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHT-TTCEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            578999999999999998877666 499999999887765433 2    234332 22  332221 111       123


Q ss_pred             CccEEEecCc
Q 016265          296 KFDVVYDAIG  305 (392)
Q Consensus       296 ~~D~vid~~G  305 (392)
                      ++|++|++.|
T Consensus       105 ~id~lv~nAg  114 (277)
T 4fc7_A          105 RIDILINCAA  114 (277)
T ss_dssp             CCCEEEECCC
T ss_pred             CCCEEEECCc
Confidence            7899999987

>2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid biosynthesis, oxidation reduction; 1.50A {Thermus thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A*

Probab=95.69  E-value=0.04  Score=49.57  Aligned_cols=73  Identities=29%  Similarity=0.386  Sum_probs=46.9

Q ss_pred             CCCeEEEEcCC--CcHHHHHHHHHHHhcCCeEEEEeCCcc---cHHHHH-hcCCcEEE--eCCCCc-cccC-------CC
Q 016265          232 AGKSILVLNGS--GGVGSLVIQLAKQVFGASRVAATSSTR---NLEFLK-SLGADLAI--DYTKDN-FEDL-------PE  295 (392)
Q Consensus       232 ~g~~VlI~Ga~--G~vG~~aiqlak~~~G~~vv~~~~~~~---~~~~~~-~~G~~~vi--~~~~~~-~~~~-------~~  295 (392)
                      .|.++||+||+  |++|...++.+.. .|++|++++++++   ..+.+. +.|....+  |..+.. +.+.       -+
T Consensus         7 ~~k~vlVTGas~~~gIG~~ia~~l~~-~G~~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g   85 (261)
T 2wyu_A            7 SGKKALVMGVTNQRSLGFAIAAKLKE-AGAEVALSYQAERLRPEAEKLAEALGGALLFRADVTQDEELDALFAGVKEAFG   85 (261)
T ss_dssp             TTCEEEEESCCSSSSHHHHHHHHHHH-HTCEEEEEESCGGGHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCCCCcHHHHHHHHHHH-CCCEEEEEcCCHHHHHHHHHHHHhcCCcEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            47899999998  9999998776666 3999999988765   233332 23432333  332221 1111       13


Q ss_pred             CccEEEecCc
Q 016265          296 KFDVVYDAIG  305 (392)
Q Consensus       296 ~~D~vid~~G  305 (392)
                      ++|++|++.|
T Consensus        86 ~iD~lv~~Ag   95 (261)
T 2wyu_A           86 GLDYLVHAIA   95 (261)
T ss_dssp             SEEEEEECCC
T ss_pred             CCCEEEECCC
Confidence            7899999876

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=95.69  E-value=0.024  Score=51.12  Aligned_cols=73  Identities=32%  Similarity=0.453  Sum_probs=47.7

Q ss_pred             CCCeEEEEcCCC-cHHHHHHHHHHHhcCCeEEEEeCCcccHHHHH----hcC-Cc-EEE--eCCCCc-cccC-------C
Q 016265          232 AGKSILVLNGSG-GVGSLVIQLAKQVFGASRVAATSSTRNLEFLK----SLG-AD-LAI--DYTKDN-FEDL-------P  294 (392)
Q Consensus       232 ~g~~VlI~Ga~G-~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~----~~G-~~-~vi--~~~~~~-~~~~-------~  294 (392)
                      .|+++||+||+| ++|...+..... .|++|++++++.++++.+.    +.+ .. .++  |..+.. +.+.       .
T Consensus        21 ~~k~vlITGasg~GIG~~~a~~l~~-~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~   99 (266)
T 3o38_A           21 KGKVVLVTAAAGTGIGSTTARRALL-EGADVVISDYHERRLGETRDQLADLGLGRVEAVVCDVTSTEAVDALITQTVEKA   99 (266)
T ss_dssp             TTCEEEESSCSSSSHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHHTTCSSCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHH-CCCEEEEecCCHHHHHHHHHHHHhcCCCceEEEEeCCCCHHHHHHHHHHHHHHh
Confidence            578999999876 899988776666 4999999999887765442    223 11 222  322211 1111       2


Q ss_pred             CCccEEEecCc
Q 016265          295 EKFDVVYDAIG  305 (392)
Q Consensus       295 ~~~D~vid~~G  305 (392)
                      +++|++|++.|
T Consensus       100 g~id~li~~Ag  110 (266)
T 3o38_A          100 GRLDVLVNNAG  110 (266)
T ss_dssp             SCCCEEEECCC
T ss_pred             CCCcEEEECCC
Confidence            36899999977

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=95.67  E-value=0.05  Score=49.40  Aligned_cols=82  Identities=11%  Similarity=0.045  Sum_probs=57.7

Q ss_pred             eEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCc-EEEeCCCCccccCCCCccEEEecCcc--HHH--
Q 016265          235 SILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGAD-LAIDYTKDNFEDLPEKFDVVYDAIGQ--CDR--  309 (392)
Q Consensus       235 ~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~-~vi~~~~~~~~~~~~~~D~vid~~G~--~~~--  309 (392)
                      +|.|+| +|.+|.+.+..+.. .|.+|++.++++++.+.+.+.|.. .+.    .+..+. .++|+||.|+..  ...  
T Consensus         2 ~i~iiG-~G~~G~~~a~~l~~-~g~~V~~~~~~~~~~~~~~~~g~~~~~~----~~~~~~-~~~D~vi~av~~~~~~~~~   74 (279)
T 2f1k_A            2 KIGVVG-LGLIGASLAGDLRR-RGHYLIGVSRQQSTCEKAVERQLVDEAG----QDLSLL-QTAKIIFLCTPIQLILPTL   74 (279)
T ss_dssp             EEEEEC-CSHHHHHHHHHHHH-TTCEEEEECSCHHHHHHHHHTTSCSEEE----SCGGGG-TTCSEEEECSCHHHHHHHH
T ss_pred             EEEEEc-CcHHHHHHHHHHHH-CCCEEEEEECCHHHHHHHHhCCCCcccc----CCHHHh-CCCCEEEEECCHHHHHHHH
Confidence            688998 99999998887776 488888888898888888888753 222    123445 689999999873  233  


Q ss_pred             --HHHhcccCCeEEEE
Q 016265          310 --AVKAIKEGGTVVAL  323 (392)
Q Consensus       310 --~~~~l~~~G~iv~~  323 (392)
                        ....++++..++.+
T Consensus        75 ~~l~~~~~~~~~vv~~   90 (279)
T 2f1k_A           75 EKLIPHLSPTAIVTDV   90 (279)
T ss_dssp             HHHGGGSCTTCEEEEC
T ss_pred             HHHHhhCCCCCEEEEC
Confidence              33345555555554

>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0

Probab=95.66  E-value=0.03  Score=51.02  Aligned_cols=35  Identities=23%  Similarity=0.335  Sum_probs=30.3

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCC
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSS  267 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~  267 (392)
                      .|+++||+||+|++|.+.++.+.. .|++|++++++
T Consensus         9 ~~k~~lVTGas~gIG~a~a~~l~~-~G~~V~~~~r~   43 (281)
T 3s55_A            9 EGKTALITGGARGMGRSHAVALAE-AGADIAICDRC   43 (281)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHH-TTCEEEEEECC
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHH-CCCeEEEEeCC
Confidence            578999999999999998777666 49999999876

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A

Probab=95.65  E-value=0.031  Score=47.85  Aligned_cols=91  Identities=21%  Similarity=0.310  Sum_probs=60.1

Q ss_pred             CCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhc----CCcE-EEeCCCCccccCCCCccEEEecC
Q 016265          230 FSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSL----GADL-AIDYTKDNFEDLPEKFDVVYDAI  304 (392)
Q Consensus       230 ~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~----G~~~-vi~~~~~~~~~~~~~~D~vid~~  304 (392)
                      +.++ +||-+| +|. |..+..+++.  |.+++.++.++..++.+++.    |... ++..+-.......+.+|+|+.+.
T Consensus        28 ~~~~-~vLdiG-cG~-G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~  102 (202)
T 2kw5_A           28 IPQG-KILCLA-EGE-GRNACFLASL--GYEVTAVDQSSVGLAKAKQLAQEKGVKITTVQSNLADFDIVADAWEGIVSIF  102 (202)
T ss_dssp             SCSS-EEEECC-CSC-THHHHHHHTT--TCEEEEECSSHHHHHHHHHHHHHHTCCEEEECCBTTTBSCCTTTCSEEEEEC
T ss_pred             CCCC-CEEEEC-CCC-CHhHHHHHhC--CCeEEEEECCHHHHHHHHHHHHhcCCceEEEEcChhhcCCCcCCccEEEEEh
Confidence            4567 999997 555 8888888874  88999999998887777543    3322 22111111211235799999753


Q ss_pred             c---------cHHHHHHhcccCCeEEEEcC
Q 016265          305 G---------QCDRAVKAIKEGGTVVALTG  325 (392)
Q Consensus       305 G---------~~~~~~~~l~~~G~iv~~g~  325 (392)
                      .         .+..+.++|++||+++....
T Consensus       103 ~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  132 (202)
T 2kw5_A          103 CHLPSSLRQQLYPKVYQGLKPGGVFILEGF  132 (202)
T ss_dssp             CCCCHHHHHHHHHHHHTTCCSSEEEEEEEE
T ss_pred             hcCCHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence            3         14677788999999887643

>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A

Probab=95.65  E-value=0.035  Score=50.41  Aligned_cols=92  Identities=14%  Similarity=0.200  Sum_probs=62.1

Q ss_pred             cchhHHHHHHHHHhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCCccccC
Q 016265          214 LPLAIETAYEGLERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFEDL  293 (392)
Q Consensus       214 l~~~~~ta~~al~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~~~  293 (392)
                      +||........++..+ -.|.+|+|+|+++-+|..+++++... |++|.++.+....++                   +.
T Consensus       132 ~PcTp~gv~~lL~~~~-l~Gk~vvVvG~s~iVG~plA~lL~~~-gAtVtv~~~~t~~L~-------------------~~  190 (276)
T 3ngx_A          132 VPATPRAVIDIMDYYG-YHENTVTIVNRSPVVGRPLSMMLLNR-NYTVSVCHSKTKDIG-------------------SM  190 (276)
T ss_dssp             CCHHHHHHHHHHHHHT-CCSCEEEEECCCTTTHHHHHHHHHHT-TCEEEEECTTCSCHH-------------------HH
T ss_pred             CCCcHHHHHHHHHHhC-cCCCEEEEEcCChHHHHHHHHHHHHC-CCeEEEEeCCcccHH-------------------Hh
Confidence            4555555566666666 78999999996667999999998884 999888765433332                   22


Q ss_pred             CCCccEEEecCccHH-HHHHhcccCCeEEEEcCC
Q 016265          294 PEKFDVVYDAIGQCD-RAVKAIKEGGTVVALTGA  326 (392)
Q Consensus       294 ~~~~D~vid~~G~~~-~~~~~l~~~G~iv~~g~~  326 (392)
                      .+.+|+||.++|... ---+.+++|..++.+|..
T Consensus       191 ~~~ADIVI~Avg~p~~I~~~~vk~GavVIDvgi~  224 (276)
T 3ngx_A          191 TRSSKIVVVAVGRPGFLNREMVTPGSVVIDVGIN  224 (276)
T ss_dssp             HHHSSEEEECSSCTTCBCGGGCCTTCEEEECCCE
T ss_pred             hccCCEEEECCCCCccccHhhccCCcEEEEeccC
Confidence            234688888887321 111346888888888654

>1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=95.64  E-value=0.023  Score=51.74  Aligned_cols=42  Identities=26%  Similarity=0.340  Sum_probs=35.0

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHH
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFL  274 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~  274 (392)
                      .|.++||+||+|++|...++.+.. .|++|+++++++++++.+
T Consensus         5 ~~k~vlVTGas~gIG~~ia~~l~~-~G~~V~~~~r~~~~~~~~   46 (280)
T 1xkq_A            5 SNKTVIITGSSNGIGRTTAILFAQ-EGANVTITGRSSERLEET   46 (280)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHH-CCCEEEEEeCCHHHHHHH
Confidence            478999999999999998877766 499999999988776544

>1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2

Probab=95.64  E-value=0.018  Score=51.86  Aligned_cols=74  Identities=16%  Similarity=0.278  Sum_probs=47.6

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHHHHhcC---CeEEEEeCCcccHHHHHhc---CCc-EEE--eCCCC-ccccCC------
Q 016265          231 SAGKSILVLNGSGGVGSLVIQLAKQVFG---ASRVAATSSTRNLEFLKSL---GAD-LAI--DYTKD-NFEDLP------  294 (392)
Q Consensus       231 ~~g~~VlI~Ga~G~vG~~aiqlak~~~G---~~vv~~~~~~~~~~~~~~~---G~~-~vi--~~~~~-~~~~~~------  294 (392)
                      ..+.+|||+||+|++|...++.+.. .|   ++|++++++.++.+.++++   +.. .++  |..+. .+.+..      
T Consensus        19 ~~~k~vlITGasggIG~~la~~L~~-~G~~~~~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~   97 (267)
T 1sny_A           19 SHMNSILITGCNRGLGLGLVKALLN-LPQPPQHLFTTCRNREQAKELEDLAKNHSNIHILEIDLRNFDAYDKLVADIEGV   97 (267)
T ss_dssp             -CCSEEEESCCSSHHHHHHHHHHHT-SSSCCSEEEEEESCTTSCHHHHHHHHHCTTEEEEECCTTCGGGHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCcHHHHHHHHHHh-cCCCCcEEEEEecChhhhHHHHHhhccCCceEEEEecCCChHHHHHHHHHHHHh
Confidence            4578999999999999998877666 48   8999999877654443332   322 222  33222 111111      


Q ss_pred             -C--CccEEEecCc
Q 016265          295 -E--KFDVVYDAIG  305 (392)
Q Consensus       295 -~--~~D~vid~~G  305 (392)
                       +  ++|++|.+.|
T Consensus        98 ~g~~~id~li~~Ag  111 (267)
T 1sny_A           98 TKDQGLNVLFNNAG  111 (267)
T ss_dssp             HGGGCCSEEEECCC
T ss_pred             cCCCCccEEEECCC
Confidence             1  6999999876

>1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=95.64  E-value=0.013  Score=53.23  Aligned_cols=42  Identities=24%  Similarity=0.253  Sum_probs=34.9

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHH
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFL  274 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~  274 (392)
                      .+.++||+||+|++|...+..+.. .|++|+++++++++++.+
T Consensus         5 ~~k~vlVTGas~gIG~~ia~~l~~-~G~~V~~~~r~~~~~~~~   46 (278)
T 1spx_A            5 AEKVAIITGSSNGIGRATAVLFAR-EGAKVTITGRHAERLEET   46 (278)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHH
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHH-CCCEEEEEeCCHHHHHHH
Confidence            468899999999999998877666 499999999988776554

>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile}

Probab=95.63  E-value=0.025  Score=51.80  Aligned_cols=37  Identities=24%  Similarity=0.405  Sum_probs=31.4

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcc
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTR  269 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~  269 (392)
                      .|.++||+||++++|.+.++.... .|++|++++++.+
T Consensus         8 ~~k~vlVTGas~GIG~aia~~l~~-~G~~V~~~~r~~~   44 (285)
T 3sc4_A            8 RGKTMFISGGSRGIGLAIAKRVAA-DGANVALVAKSAE   44 (285)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHT-TTCEEEEEESCCS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHH-CCCEEEEEECChh
Confidence            478999999999999987776666 4999999998765

>3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium}

Probab=95.63  E-value=0.019  Score=52.08  Aligned_cols=41  Identities=24%  Similarity=0.358  Sum_probs=32.7

Q ss_pred             CCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccH
Q 016265          230 FSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNL  271 (392)
Q Consensus       230 ~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~  271 (392)
                      ...|++|||+||+|++|.+.++.... .|++|+++++++++.
T Consensus        11 ~~~~k~vlVTGas~GIG~aia~~l~~-~G~~V~~~~r~~~~~   51 (269)
T 3vtz_A           11 EFTDKVAIVTGGSSGIGLAVVDALVR-YGAKVVSVSLDEKSD   51 (269)
T ss_dssp             TTTTCEEEESSTTSHHHHHHHHHHHH-TTCEEEEEESCC--C
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHH-CCCEEEEEeCCchhc
Confidence            45789999999999999998877666 499999998866543

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}

Probab=95.62  E-value=0.039  Score=47.88  Aligned_cols=99  Identities=15%  Similarity=0.183  Sum_probs=65.3

Q ss_pred             HHhcCCCCCCeEEEEcCCCcHHHHHHHHHHHh-cCCeEEEEeCCcccHHHHHh----cCCc--EEEeCCCCccccCCCCc
Q 016265          225 LERTGFSAGKSILVLNGSGGVGSLVIQLAKQV-FGASRVAATSSTRNLEFLKS----LGAD--LAIDYTKDNFEDLPEKF  297 (392)
Q Consensus       225 l~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~-~G~~vv~~~~~~~~~~~~~~----~G~~--~vi~~~~~~~~~~~~~~  297 (392)
                      +....+.++.+||-+| +| .|..+..+++.. -..+++.++.+++.++.+++    .|..  .++..+-..+....+.+
T Consensus        30 ~~~~~~~~~~~vLDiG-~G-~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~f  107 (219)
T 3dh0_A           30 LKEFGLKEGMTVLDVG-TG-AGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENKIPLPDNTV  107 (219)
T ss_dssp             HHHHTCCTTCEEEESS-CT-TCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTTBCSSCSSCE
T ss_pred             HHHhCCCCCCEEEEEe-cC-CCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCcEEEEecccccCCCCCCCe
Confidence            3455788899999997 54 488888888862 13688999999887776654    3322  22222222222123469


Q ss_pred             cEEEecCc---------cHHHHHHhcccCCeEEEEcC
Q 016265          298 DVVYDAIG---------QCDRAVKAIKEGGTVVALTG  325 (392)
Q Consensus       298 D~vid~~G---------~~~~~~~~l~~~G~iv~~g~  325 (392)
                      |+|+....         .++.+.++|++||+++....
T Consensus       108 D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~  144 (219)
T 3dh0_A          108 DFIFMAFTFHELSEPLKFLEELKRVAKPFAYLAIIDW  144 (219)
T ss_dssp             EEEEEESCGGGCSSHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             eEEEeehhhhhcCCHHHHHHHHHHHhCCCeEEEEEEe
Confidence            99986532         24788899999999987643

>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2

Probab=95.62  E-value=0.033  Score=51.23  Aligned_cols=42  Identities=21%  Similarity=0.415  Sum_probs=34.5

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHH
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFL  274 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~  274 (392)
                      .|.+|+|+||+|++|...+..+.. .|++|++++++.++.+.+
T Consensus        17 ~~k~vlVTGasggIG~~la~~l~~-~G~~V~~~~r~~~~~~~~   58 (303)
T 1yxm_A           17 QGQVAIVTGGATGIGKAIVKELLE-LGSNVVIASRKLERLKSA   58 (303)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHH
Confidence            468999999999999998877666 499999999887765543

>1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A

Probab=95.62  E-value=0.023  Score=51.13  Aligned_cols=73  Identities=23%  Similarity=0.380  Sum_probs=49.0

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHH----HhcCCcE-EE--eCCCCc-cccC--------CC
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFL----KSLGADL-AI--DYTKDN-FEDL--------PE  295 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~----~~~G~~~-vi--~~~~~~-~~~~--------~~  295 (392)
                      .+.+|||+||+|++|...++.+.. .|++|+++++++++.+.+    ++.|... .+  |..+.. +.+.        .+
T Consensus        13 ~~k~vlITGasggiG~~la~~l~~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   91 (266)
T 1xq1_A           13 KAKTVLVTGGTKGIGHAIVEEFAG-FGAVIHTCARNEYELNECLSKWQKKGFQVTGSVCDASLRPEREKLMQTVSSMFGG   91 (266)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHTT
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHHHHhcCCeeEEEECCCCCHHHHHHHHHHHHHHhCC
Confidence            478999999999999998887766 499999999887765543    2334332 22  222211 1111        15


Q ss_pred             CccEEEecCc
Q 016265          296 KFDVVYDAIG  305 (392)
Q Consensus       296 ~~D~vid~~G  305 (392)
                      ++|++|++.|
T Consensus        92 ~id~li~~Ag  101 (266)
T 1xq1_A           92 KLDILINNLG  101 (266)
T ss_dssp             CCSEEEEECC
T ss_pred             CCcEEEECCC
Confidence            7899999876

>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A*

Probab=95.61  E-value=0.031  Score=51.03  Aligned_cols=35  Identities=26%  Similarity=0.232  Sum_probs=29.9

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCC
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSS  267 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~  267 (392)
                      .|+++||+||++++|.+.++.... .|++|++++++
T Consensus        10 ~~k~~lVTGas~gIG~aia~~la~-~G~~V~~~~~~   44 (286)
T 3uve_A           10 EGKVAFVTGAARGQGRSHAVRLAQ-EGADIIAVDIC   44 (286)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHH-TTCEEEEEECC
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHH-CCCeEEEEecc
Confidence            578999999999999987776666 49999998775

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*

Probab=95.60  E-value=0.024  Score=53.34  Aligned_cols=84  Identities=23%  Similarity=0.363  Sum_probs=62.1

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCCccccCCCCccEEEecCcc-----
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFEDLPEKFDVVYDAIGQ-----  306 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~~~~~~~D~vid~~G~-----  306 (392)
                      .|.+|.|+| .|.+|...++.++. +|.+|++.+++.++ +.++++|...      .++.+.....|+|+.++..     
T Consensus       149 ~g~~vgIIG-~G~iG~~iA~~l~~-~G~~V~~~d~~~~~-~~~~~~g~~~------~~l~~~l~~aDvVil~vp~~~~t~  219 (334)
T 2dbq_A          149 YGKTIGIIG-LGRIGQAIAKRAKG-FNMRILYYSRTRKE-EVERELNAEF------KPLEDLLRESDFVVLAVPLTRETY  219 (334)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHH-TTCEEEEECSSCCH-HHHHHHCCEE------CCHHHHHHHCSEEEECCCCCTTTT
T ss_pred             CCCEEEEEc-cCHHHHHHHHHHHh-CCCEEEEECCCcch-hhHhhcCccc------CCHHHHHhhCCEEEECCCCChHHH
Confidence            567999998 99999999999988 69999999887776 6666667531      1233333467999988751     


Q ss_pred             --H-HHHHHhcccCCeEEEEc
Q 016265          307 --C-DRAVKAIKEGGTVVALT  324 (392)
Q Consensus       307 --~-~~~~~~l~~~G~iv~~g  324 (392)
                        + ...+..++++..++.++
T Consensus       220 ~~i~~~~~~~mk~~ailIn~s  240 (334)
T 2dbq_A          220 HLINEERLKLMKKTAILINIA  240 (334)
T ss_dssp             TCBCHHHHHHSCTTCEEEECS
T ss_pred             HhhCHHHHhcCCCCcEEEECC
Confidence              2 45677888888887664

>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*

Probab=95.60  E-value=0.032  Score=51.15  Aligned_cols=75  Identities=23%  Similarity=0.297  Sum_probs=51.1

Q ss_pred             HHHhcCC-CCCCeEEEEcCCCcHHHHHHHHHHHhcCC-eEEEEeCCcccHHHH-HhcCC---cEEEeCCCCccccCCCCc
Q 016265          224 GLERTGF-SAGKSILVLNGSGGVGSLVIQLAKQVFGA-SRVAATSSTRNLEFL-KSLGA---DLAIDYTKDNFEDLPEKF  297 (392)
Q Consensus       224 al~~~~~-~~g~~VlI~Ga~G~vG~~aiqlak~~~G~-~vv~~~~~~~~~~~~-~~~G~---~~vi~~~~~~~~~~~~~~  297 (392)
                      +|+.... -.|.+++|+| +|++|.+.+..+.. .|+ +++++.++.+|.+.+ ++++.   -.++.     +.+...++
T Consensus       116 ~L~~~~~~l~~k~vlvlG-aGg~g~aia~~L~~-~G~~~v~v~~R~~~~a~~la~~~~~~~~~~~~~-----~~~l~~~a  188 (281)
T 3o8q_A          116 DLLAQQVLLKGATILLIG-AGGAARGVLKPLLD-QQPASITVTNRTFAKAEQLAELVAAYGEVKAQA-----FEQLKQSY  188 (281)
T ss_dssp             HHHHTTCCCTTCEEEEEC-CSHHHHHHHHHHHT-TCCSEEEEEESSHHHHHHHHHHHGGGSCEEEEE-----GGGCCSCE
T ss_pred             HHHHhCCCccCCEEEEEC-chHHHHHHHHHHHh-cCCCeEEEEECCHHHHHHHHHHhhccCCeeEee-----HHHhcCCC
Confidence            3444433 3678999998 79999998877766 486 788888888876544 44442   12332     23333689


Q ss_pred             cEEEecCc
Q 016265          298 DVVYDAIG  305 (392)
Q Consensus       298 D~vid~~G  305 (392)
                      |+||+|++
T Consensus       189 DiIInaTp  196 (281)
T 3o8q_A          189 DVIINSTS  196 (281)
T ss_dssp             EEEEECSC
T ss_pred             CEEEEcCc
Confidence            99999986

>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}

Probab=95.60  E-value=0.047  Score=49.79  Aligned_cols=93  Identities=22%  Similarity=0.234  Sum_probs=61.9

Q ss_pred             cchhHHHHHHHHHhcCC-CCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCCcccc
Q 016265          214 LPLAIETAYEGLERTGF-SAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFED  292 (392)
Q Consensus       214 l~~~~~ta~~al~~~~~-~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~~  292 (392)
                      +||....+...|+.... -.|.+++|+|.++.+|..+++++... |+.|.++.+....++                   +
T Consensus       140 ~PcTp~gv~~lL~~~~i~l~Gk~vvVvGrs~iVG~p~A~lL~~~-gAtVtv~h~~t~~L~-------------------~  199 (285)
T 3p2o_A          140 LPCTPLGVMKLLKAYEIDLEGKDAVIIGASNIVGRPMATMLLNA-GATVSVCHIKTKDLS-------------------L  199 (285)
T ss_dssp             CCHHHHHHHHHHHHTTCCCTTCEEEEECCCTTTHHHHHHHHHHT-TCEEEEECTTCSCHH-------------------H
T ss_pred             CCCCHHHHHHHHHHhCCCCCCCEEEEECCCchHHHHHHHHHHHC-CCeEEEEeCCchhHH-------------------H
Confidence            45554445555665544 47999999996677999999999884 998887765433332                   2


Q ss_pred             CCCCccEEEecCccHH-HHHHhcccCCeEEEEcCC
Q 016265          293 LPEKFDVVYDAIGQCD-RAVKAIKEGGTVVALTGA  326 (392)
Q Consensus       293 ~~~~~D~vid~~G~~~-~~~~~l~~~G~iv~~g~~  326 (392)
                      ..+.+|+||.++|... ---+.+++|..++.+|..
T Consensus       200 ~~~~ADIVI~Avg~p~~I~~~~vk~GavVIDVgi~  234 (285)
T 3p2o_A          200 YTRQADLIIVAAGCVNLLRSDMVKEGVIVVDVGIN  234 (285)
T ss_dssp             HHTTCSEEEECSSCTTCBCGGGSCTTEEEEECCCE
T ss_pred             HhhcCCEEEECCCCCCcCCHHHcCCCeEEEEeccC
Confidence            2346788888887321 112456888777777654

>2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, aquifex A VF5, structural genomics, PSI; 2.00A {Aquifex aeolicus}

Probab=95.60  E-value=0.041  Score=50.20  Aligned_cols=73  Identities=16%  Similarity=0.281  Sum_probs=47.0

Q ss_pred             CCCeEEEEcCC--CcHHHHHHHHHHHhcCCeEEEEeCCcc---cHHHHH-hcCCcEEE--eCCCCc-ccc-------CCC
Q 016265          232 AGKSILVLNGS--GGVGSLVIQLAKQVFGASRVAATSSTR---NLEFLK-SLGADLAI--DYTKDN-FED-------LPE  295 (392)
Q Consensus       232 ~g~~VlI~Ga~--G~vG~~aiqlak~~~G~~vv~~~~~~~---~~~~~~-~~G~~~vi--~~~~~~-~~~-------~~~  295 (392)
                      .|.++||+||+  |++|.+.++.+.. .|++|++++++++   ..+.+. +.|....+  |..+.. +.+       .-+
T Consensus        20 ~~k~vlVTGas~~~gIG~~ia~~l~~-~G~~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g   98 (285)
T 2p91_A           20 EGKRALITGVANERSIAYGIAKSFHR-EGAQLAFTYATPKLEKRVREIAKGFGSDLVVKCDVSLDEDIKNLKKFLEENWG   98 (285)
T ss_dssp             TTCEEEECCCSSTTSHHHHHHHHHHH-TTCEEEEEESSGGGHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHHHTS
T ss_pred             CCCEEEEECCCCCCcHHHHHHHHHHH-cCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            57899999998  9999998877666 4999999988764   233332 23422233  332221 111       124


Q ss_pred             CccEEEecCc
Q 016265          296 KFDVVYDAIG  305 (392)
Q Consensus       296 ~~D~vid~~G  305 (392)
                      ++|++|++.|
T Consensus        99 ~iD~lv~~Ag  108 (285)
T 2p91_A           99 SLDIIVHSIA  108 (285)
T ss_dssp             CCCEEEECCC
T ss_pred             CCCEEEECCC
Confidence            7899999875

>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium}

Probab=95.59  E-value=0.031  Score=51.47  Aligned_cols=36  Identities=19%  Similarity=0.207  Sum_probs=30.3

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCC
Q 016265          231 SAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSS  267 (392)
Q Consensus       231 ~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~  267 (392)
                      -.|+++||+||++++|.+.++.... .|++|++++++
T Consensus        26 l~gk~~lVTGas~GIG~aia~~la~-~G~~V~~~~~~   61 (299)
T 3t7c_A           26 VEGKVAFITGAARGQGRSHAITLAR-EGADIIAIDVC   61 (299)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHH-TTCEEEEEECC
T ss_pred             cCCCEEEEECCCCHHHHHHHHHHHH-CCCEEEEEecc
Confidence            3578999999999999997776666 49999998875

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=95.59  E-value=0.14  Score=40.68  Aligned_cols=72  Identities=21%  Similarity=0.170  Sum_probs=50.1

Q ss_pred             CCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHh-cCCcEEE-eCCCCc-cc-cCCCCccEEEecCcc
Q 016265          233 GKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKS-LGADLAI-DYTKDN-FE-DLPEKFDVVYDAIGQ  306 (392)
Q Consensus       233 g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~-~G~~~vi-~~~~~~-~~-~~~~~~D~vid~~G~  306 (392)
                      +.+|+|+| +|.+|...++.+.. .|.+++++++++++.+.+++ +|...+. |..+.. +. ...+++|+||.|++.
T Consensus         4 ~m~i~IiG-~G~iG~~~a~~L~~-~g~~v~~~d~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~~~   79 (140)
T 1lss_A            4 GMYIIIAG-IGRVGYTLAKSLSE-KGHDIVLIDIDKDICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAVTGK   79 (140)
T ss_dssp             -CEEEEEC-CSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEECCSC
T ss_pred             CCEEEEEC-CCHHHHHHHHHHHh-CCCeEEEEECCHHHHHHHHHhcCcEEEEcCCCCHHHHHHcCcccCCEEEEeeCC
Confidence            45799998 79999998888877 49999999998888776653 5654322 222221 12 124579999999884

>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2

Probab=95.59  E-value=0.029  Score=51.19  Aligned_cols=73  Identities=16%  Similarity=0.323  Sum_probs=48.3

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHH----HhcCCcE-EE--eCCCCc-ccc-------CCCC
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFL----KSLGADL-AI--DYTKDN-FED-------LPEK  296 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~----~~~G~~~-vi--~~~~~~-~~~-------~~~~  296 (392)
                      .+.+|||+||+|++|...+..+.. .|++|+++.+++++.+.+    ++.|... .+  |..+.. +.+       ..++
T Consensus        43 ~~k~vlITGasggIG~~la~~L~~-~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~~~  121 (285)
T 2c07_A           43 ENKVALVTGAGRGIGREIAKMLAK-SVSHVICISRTQKSCDSVVDEIKSFGYESSGYAGDVSKKEEISEVINKILTEHKN  121 (285)
T ss_dssp             SSCEEEEESTTSHHHHHHHHHHTT-TSSEEEEEESSHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHCSC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHH-cCCEEEEEcCCHHHHHHHHHHHHhcCCceeEEECCCCCHHHHHHHHHHHHHhcCC
Confidence            468999999999999998877766 499999988776665443    2335432 22  332221 111       1247


Q ss_pred             ccEEEecCc
Q 016265          297 FDVVYDAIG  305 (392)
Q Consensus       297 ~D~vid~~G  305 (392)
                      +|++|.+.|
T Consensus       122 id~li~~Ag  130 (285)
T 2c07_A          122 VDILVNNAG  130 (285)
T ss_dssp             CCEEEECCC
T ss_pred             CCEEEECCC
Confidence            899999876

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=95.59  E-value=0.049  Score=52.79  Aligned_cols=92  Identities=21%  Similarity=0.270  Sum_probs=67.7

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEE-eCCCCcc-ccC-CCCccEEEecCccH-
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAI-DYTKDNF-EDL-PEKFDVVYDAIGQC-  307 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi-~~~~~~~-~~~-~~~~D~vid~~G~~-  307 (392)
                      .+++|+|+| .|-+|+..++.++. .|..+++++.++++.+.+++.|...++ |..+.+. ... .+.+|+||-+++.. 
T Consensus         3 ~~~~viIiG-~Gr~G~~va~~L~~-~g~~vvvId~d~~~v~~~~~~g~~vi~GDat~~~~L~~agi~~A~~viv~~~~~~   80 (413)
T 3l9w_A            3 HGMRVIIAG-FGRFGQITGRLLLS-SGVKMVVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDDPQ   80 (413)
T ss_dssp             -CCSEEEEC-CSHHHHHHHHHHHH-TTCCEEEEECCHHHHHHHHHTTCCCEESCTTCHHHHHHTTTTTCSEEEECCSSHH
T ss_pred             CCCeEEEEC-CCHHHHHHHHHHHH-CCCCEEEEECCHHHHHHHHhCCCeEEEcCCCCHHHHHhcCCCccCEEEECCCChH
Confidence            356799998 89999999999988 599999999999999999999876444 3333322 222 45799999999842 


Q ss_pred             -----HHHHHhcccCCeEEEEcC
Q 016265          308 -----DRAVKAIKEGGTVVALTG  325 (392)
Q Consensus       308 -----~~~~~~l~~~G~iv~~g~  325 (392)
                           -...+.+.+..+++....
T Consensus        81 ~n~~i~~~ar~~~p~~~Iiara~  103 (413)
T 3l9w_A           81 TNLQLTEMVKEHFPHLQIIARAR  103 (413)
T ss_dssp             HHHHHHHHHHHHCTTCEEEEEES
T ss_pred             HHHHHHHHHHHhCCCCeEEEEEC
Confidence                 344455667777776543

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A

Probab=95.59  E-value=0.019  Score=53.92  Aligned_cols=85  Identities=18%  Similarity=0.307  Sum_probs=63.3

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCCccccCCCCccEEEecCcc-----
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFEDLPEKFDVVYDAIGQ-----  306 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~~~~~~~D~vid~~G~-----  306 (392)
                      .|.+|.|+| .|.+|...++.++. +|.+|++.+++.++.+.+.++|...+      +..+.....|+|+.++..     
T Consensus       154 ~g~~vgIIG-~G~iG~~iA~~l~~-~G~~V~~~d~~~~~~~~~~~~g~~~~------~l~e~l~~aDvVi~~vp~~~~t~  225 (330)
T 2gcg_A          154 TQSTVGIIG-LGRIGQAIARRLKP-FGVQRFLYTGRQPRPEEAAEFQAEFV------STPELAAQSDFIVVACSLTPATE  225 (330)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHGG-GTCCEEEEESSSCCHHHHHTTTCEEC------CHHHHHHHCSEEEECCCCCTTTT
T ss_pred             CCCEEEEEC-cCHHHHHHHHHHHH-CCCEEEEECCCCcchhHHHhcCceeC------CHHHHHhhCCEEEEeCCCChHHH
Confidence            477999998 89999999999987 59999999987777776666665321      233333467999998751     


Q ss_pred             --H-HHHHHhcccCCeEEEEc
Q 016265          307 --C-DRAVKAIKEGGTVVALT  324 (392)
Q Consensus       307 --~-~~~~~~l~~~G~iv~~g  324 (392)
                        + ...++.++++..++..+
T Consensus       226 ~~i~~~~~~~mk~gailIn~s  246 (330)
T 2gcg_A          226 GLCNKDFFQKMKETAVFINIS  246 (330)
T ss_dssp             TCBSHHHHHHSCTTCEEEECS
T ss_pred             HhhCHHHHhcCCCCcEEEECC
Confidence              2 46678888888877664

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=95.57  E-value=0.038  Score=49.73  Aligned_cols=90  Identities=12%  Similarity=0.069  Sum_probs=60.0

Q ss_pred             CCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHh-cCC---------------------c-EEEeCC
Q 016265          230 FSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKS-LGA---------------------D-LAIDYT  286 (392)
Q Consensus       230 ~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~-~G~---------------------~-~vi~~~  286 (392)
                      ..++.+||..| +| .|..+..+|+.  |.+|+.++.++.-++.+++ .+.                     . .++..+
T Consensus        66 ~~~~~~vLD~G-CG-~G~~~~~La~~--G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D  141 (252)
T 2gb4_A           66 GQSGLRVFFPL-CG-KAIEMKWFADR--GHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCS  141 (252)
T ss_dssp             TCCSCEEEETT-CT-TCTHHHHHHHT--TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESC
T ss_pred             CCCCCeEEEeC-CC-CcHHHHHHHHC--CCeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECc
Confidence            46788999997 54 58888889974  8999999999998888753 321                     1 111111


Q ss_pred             CCccccC-CCCccEEEecCc--c---------HHHHHHhcccCCeEEEE
Q 016265          287 KDNFEDL-PEKFDVVYDAIG--Q---------CDRAVKAIKEGGTVVAL  323 (392)
Q Consensus       287 ~~~~~~~-~~~~D~vid~~G--~---------~~~~~~~l~~~G~iv~~  323 (392)
                      -.++... .+.||+|++..-  .         +..+.++|+|||+++.+
T Consensus       142 ~~~l~~~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~LkpGG~l~l~  190 (252)
T 2gb4_A          142 IFDLPRANIGKFDRIWDRGALVAINPGDHDRYADIILSLLRKEFQYLVA  190 (252)
T ss_dssp             TTTGGGGCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEE
T ss_pred             cccCCcccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCCCeEEEEE
Confidence            1111111 257999997532  1         35678899999998644

>2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET: NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A

Probab=95.56  E-value=0.023  Score=50.98  Aligned_cols=73  Identities=23%  Similarity=0.301  Sum_probs=47.0

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCccc--HHHHHhcCCcEE-E--eCCCC-ccccC-------CCCcc
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRN--LEFLKSLGADLA-I--DYTKD-NFEDL-------PEKFD  298 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~--~~~~~~~G~~~v-i--~~~~~-~~~~~-------~~~~D  298 (392)
                      .|.++||+||+|++|...++.+.. .|++|+++++++++  .+.+++.|.... +  |..+. .+.+.       -+++|
T Consensus         3 ~~k~vlVTGas~giG~~ia~~l~~-~G~~V~~~~r~~~~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~id   81 (255)
T 2q2v_A            3 KGKTALVTGSTSGIGLGIAQVLAR-AGANIVLNGFGDPAPALAEIARHGVKAVHHPADLSDVAQIEALFALAEREFGGVD   81 (255)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHH-TTCEEEEECSSCCHHHHHHHHTTSCCEEEECCCTTSHHHHHHHHHHHHHHHSSCS
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHH-CCCEEEEEeCCchHHHHHHHHhcCCceEEEeCCCCCHHHHHHHHHHHHHHcCCCC
Confidence            468999999999999998877766 49999998876551  222333454322 2  22221 11111       13799


Q ss_pred             EEEecCc
Q 016265          299 VVYDAIG  305 (392)
Q Consensus       299 ~vid~~G  305 (392)
                      ++|++.|
T Consensus        82 ~lv~~Ag   88 (255)
T 2q2v_A           82 ILVNNAG   88 (255)
T ss_dssp             EEEECCC
T ss_pred             EEEECCC
Confidence            9999876

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=95.56  E-value=0.028  Score=50.87  Aligned_cols=93  Identities=16%  Similarity=0.255  Sum_probs=61.7

Q ss_pred             CCCCCCeEEEEcCCCcHHHHHHHHHHHh--cCCeEEEEeCCcccHHHHHh----cCCcEEEeCCCCccccC-CCCccEEE
Q 016265          229 GFSAGKSILVLNGSGGVGSLVIQLAKQV--FGASRVAATSSTRNLEFLKS----LGADLAIDYTKDNFEDL-PEKFDVVY  301 (392)
Q Consensus       229 ~~~~g~~VlI~Ga~G~vG~~aiqlak~~--~G~~vv~~~~~~~~~~~~~~----~G~~~vi~~~~~~~~~~-~~~~D~vi  301 (392)
                      -+++|.+||=+| + |.|..+..+++..  .|++++.++.+++-++.+++    .+...-+.....++.+. .+.+|+|+
T Consensus        67 ~~~~~~~vLDlG-c-GtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~v~  144 (261)
T 4gek_A           67 FVQPGTQVYDLG-C-SLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVV  144 (261)
T ss_dssp             HCCTTCEEEEET-C-TTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCCCCSEEEEE
T ss_pred             hCCCCCEEEEEe-C-CCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeecccccccccccccce
Confidence            378999999997 4 4588888888763  26789999999987777754    34322122111222222 24689887


Q ss_pred             ecCc-----------cHHHHHHhcccCCeEEEE
Q 016265          302 DAIG-----------QCDRAVKAIKEGGTVVAL  323 (392)
Q Consensus       302 d~~G-----------~~~~~~~~l~~~G~iv~~  323 (392)
                      -...           .+..+.+.|+|||+++..
T Consensus       145 ~~~~l~~~~~~~~~~~l~~i~~~LkpGG~lii~  177 (261)
T 4gek_A          145 LNFTLQFLEPSERQALLDKIYQGLNPGGALVLS  177 (261)
T ss_dssp             EESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             eeeeeeecCchhHhHHHHHHHHHcCCCcEEEEE
Confidence            6432           146788899999999865

>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1}

Probab=95.56  E-value=0.061  Score=49.03  Aligned_cols=94  Identities=24%  Similarity=0.180  Sum_probs=63.5

Q ss_pred             cchhHHHHHHHHHhcCC-CCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCCcccc
Q 016265          214 LPLAIETAYEGLERTGF-SAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFED  292 (392)
Q Consensus       214 l~~~~~ta~~al~~~~~-~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~~  292 (392)
                      +||....+...|++.++ -.|.+|+|+|.++-+|..+++++... |+.|.++.+....++                   +
T Consensus       141 ~PcTp~gv~~lL~~~~i~l~Gk~vvVvGrs~iVG~plA~lL~~~-gAtVtv~hs~T~~L~-------------------~  200 (286)
T 4a5o_A          141 RPCTPKGIMTLLASTGADLYGMDAVVVGASNIVGRPMALELLLG-GCTVTVTHRFTRDLA-------------------D  200 (286)
T ss_dssp             CCHHHHHHHHHHHHTTCCCTTCEEEEECTTSTTHHHHHHHHHHT-TCEEEEECTTCSCHH-------------------H
T ss_pred             CCCCHHHHHHHHHHhCCCCCCCEEEEECCCchhHHHHHHHHHHC-CCeEEEEeCCCcCHH-------------------H
Confidence            45555555566666554 47999999996677999999999884 998887765333322                   2


Q ss_pred             CCCCccEEEecCccHH-HHHHhcccCCeEEEEcCCC
Q 016265          293 LPEKFDVVYDAIGQCD-RAVKAIKEGGTVVALTGAV  327 (392)
Q Consensus       293 ~~~~~D~vid~~G~~~-~~~~~l~~~G~iv~~g~~~  327 (392)
                      ..+.+|+||.++|... ---+.+++|..++.+|...
T Consensus       201 ~~~~ADIVI~Avg~p~~I~~~~vk~GavVIDvgi~~  236 (286)
T 4a5o_A          201 HVSRADLVVVAAGKPGLVKGEWIKEGAIVIDVGINR  236 (286)
T ss_dssp             HHHTCSEEEECCCCTTCBCGGGSCTTCEEEECCSCS
T ss_pred             HhccCCEEEECCCCCCCCCHHHcCCCeEEEEecccc
Confidence            2235688888887321 1124578888888887654

>2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A*

Probab=95.55  E-value=0.037  Score=52.07  Aligned_cols=75  Identities=13%  Similarity=0.156  Sum_probs=50.3

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHHHHhcCC-eEEEEeCCcccHHHHH-hcCC--cEEE--eCCCC-ccccCCCCccEEEec
Q 016265          231 SAGKSILVLNGSGGVGSLVIQLAKQVFGA-SRVAATSSTRNLEFLK-SLGA--DLAI--DYTKD-NFEDLPEKFDVVYDA  303 (392)
Q Consensus       231 ~~g~~VlI~Ga~G~vG~~aiqlak~~~G~-~vv~~~~~~~~~~~~~-~~G~--~~vi--~~~~~-~~~~~~~~~D~vid~  303 (392)
                      -.+.+|||+||+|.+|...++.+...+|. +|+++++++.+.+.+. .+..  -..+  |..+. .+.+..+++|+||.+
T Consensus        19 ~~~k~vlVTGatG~iG~~l~~~L~~~~g~~~V~~~~r~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~D~Vih~   98 (344)
T 2gn4_A           19 LDNQTILITGGTGSFGKCFVRKVLDTTNAKKIIVYSRDELKQSEMAMEFNDPRMRFFIGDVRDLERLNYALEGVDICIHA   98 (344)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHHCCCSEEEEEESCHHHHHHHHHHHCCTTEEEEECCTTCHHHHHHHTTTCSEEEEC
T ss_pred             hCCCEEEEECCCcHHHHHHHHHHHhhCCCCEEEEEECChhhHHHHHHHhcCCCEEEEECCCCCHHHHHHHHhcCCEEEEC
Confidence            35789999999999999988766552287 8889998877765543 3321  1122  33222 223344689999999


Q ss_pred             Cc
Q 016265          304 IG  305 (392)
Q Consensus       304 ~G  305 (392)
                      .|
T Consensus        99 Aa  100 (344)
T 2gn4_A           99 AA  100 (344)
T ss_dssp             CC
T ss_pred             CC
Confidence            86

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}

Probab=95.55  E-value=0.017  Score=48.15  Aligned_cols=92  Identities=13%  Similarity=0.030  Sum_probs=63.8

Q ss_pred             hcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCc-EEEeCCCCccccCCCCccEEEecCc
Q 016265          227 RTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGAD-LAIDYTKDNFEDLPEKFDVVYDAIG  305 (392)
Q Consensus       227 ~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~-~vi~~~~~~~~~~~~~~D~vid~~G  305 (392)
                      ...+.++++||-+| +| .|..+..+++. . .+++.++.++...+.+++.... .++..+   .....+.+|+|+....
T Consensus        12 ~~~~~~~~~vLDiG-~G-~G~~~~~l~~~-~-~~v~~vD~s~~~~~~a~~~~~~v~~~~~d---~~~~~~~~D~v~~~~~   84 (170)
T 3i9f_A           12 NIFEGKKGVIVDYG-CG-NGFYCKYLLEF-A-TKLYCIDINVIALKEVKEKFDSVITLSDP---KEIPDNSVDFILFANS   84 (170)
T ss_dssp             HHHSSCCEEEEEET-CT-TCTTHHHHHTT-E-EEEEEECSCHHHHHHHHHHCTTSEEESSG---GGSCTTCEEEEEEESC
T ss_pred             hcCcCCCCeEEEEC-CC-CCHHHHHHHhh-c-CeEEEEeCCHHHHHHHHHhCCCcEEEeCC---CCCCCCceEEEEEccc
Confidence            34567889999997 54 48888888876 3 4888889898888888765222 222222   2222357999996532


Q ss_pred             ---------cHHHHHHhcccCCeEEEEcC
Q 016265          306 ---------QCDRAVKAIKEGGTVVALTG  325 (392)
Q Consensus       306 ---------~~~~~~~~l~~~G~iv~~g~  325 (392)
                               .++.+.+.|++||+++....
T Consensus        85 l~~~~~~~~~l~~~~~~L~pgG~l~~~~~  113 (170)
T 3i9f_A           85 FHDMDDKQHVISEVKRILKDDGRVIIIDW  113 (170)
T ss_dssp             STTCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             hhcccCHHHHHHHHHHhcCCCCEEEEEEc
Confidence                     14788899999999987743

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=95.55  E-value=0.0074  Score=51.82  Aligned_cols=91  Identities=23%  Similarity=0.224  Sum_probs=57.9

Q ss_pred             CeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEE--eCCC-CccccCCCCccEEEecCcc----
Q 016265          234 KSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAI--DYTK-DNFEDLPEKFDVVYDAIGQ----  306 (392)
Q Consensus       234 ~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi--~~~~-~~~~~~~~~~D~vid~~G~----  306 (392)
                      .+|+|+||+|.+|...++.+.. .|.+|+++++++.+.+.....+. .++  |..+ +.+.+..+++|+||.+.|.    
T Consensus         4 ~~ilVtGatG~iG~~l~~~l~~-~g~~V~~~~r~~~~~~~~~~~~~-~~~~~D~~~~~~~~~~~~~~d~vi~~a~~~~~~   81 (206)
T 1hdo_A            4 KKIAIFGATGQTGLTTLAQAVQ-AGYEVTVLVRDSSRLPSEGPRPA-HVVVGDVLQAADVDKTVAGQDAVIVLLGTRNDL   81 (206)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHH-TTCEEEEEESCGGGSCSSSCCCS-EEEESCTTSHHHHHHHHTTCSEEEECCCCTTCC
T ss_pred             CEEEEEcCCcHHHHHHHHHHHH-CCCeEEEEEeChhhcccccCCce-EEEEecCCCHHHHHHHHcCCCEEEECccCCCCC
Confidence            6899999999999998888777 49999999988765432211122 222  2222 1233334578999999772    


Q ss_pred             ---------HHHHHHhccc--CCeEEEEcCC
Q 016265          307 ---------CDRAVKAIKE--GGTVVALTGA  326 (392)
Q Consensus       307 ---------~~~~~~~l~~--~G~iv~~g~~  326 (392)
                               ...+++.++.  .++++.++..
T Consensus        82 ~~~~~n~~~~~~~~~~~~~~~~~~~v~~Ss~  112 (206)
T 1hdo_A           82 SPTTVMSEGARNIVAAMKAHGVDKVVACTSA  112 (206)
T ss_dssp             SCCCHHHHHHHHHHHHHHHHTCCEEEEECCG
T ss_pred             CccchHHHHHHHHHHHHHHhCCCeEEEEeee
Confidence                     2344444443  3588877543

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}

Probab=95.54  E-value=0.044  Score=53.75  Aligned_cols=98  Identities=17%  Similarity=0.198  Sum_probs=64.2

Q ss_pred             HhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcC-CeEEEEeCCcccHHHHHh----cCCcE--EEeCCCCcccc-CC-CC
Q 016265          226 ERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFG-ASRVAATSSTRNLEFLKS----LGADL--AIDYTKDNFED-LP-EK  296 (392)
Q Consensus       226 ~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G-~~vv~~~~~~~~~~~~~~----~G~~~--vi~~~~~~~~~-~~-~~  296 (392)
                      ....+++|++||=.| +|+ |..+.++++.+.+ .++++++.++.+++.+++    +|...  ++..+...+.. .. +.
T Consensus       253 ~~l~~~~g~~VLDlg-aG~-G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~  330 (450)
T 2yxl_A          253 IVLDPKPGETVVDLA-AAP-GGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKDARKAPEIIGEEV  330 (450)
T ss_dssp             HHHCCCTTCEEEESS-CTT-CHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCTTCCSSSSCSSC
T ss_pred             HhcCCCCcCEEEEeC-CCc-cHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEEEcChhhcchhhccCC
Confidence            344688999999887 555 7777888887534 688899999998877643    46532  22222222211 22 46


Q ss_pred             ccEEEe---cCc--c--------------------------HHHHHHhcccCCeEEEEcC
Q 016265          297 FDVVYD---AIG--Q--------------------------CDRAVKAIKEGGTVVALTG  325 (392)
Q Consensus       297 ~D~vid---~~G--~--------------------------~~~~~~~l~~~G~iv~~g~  325 (392)
                      ||+|+-   |+|  .                          ++.+.++|++||+++....
T Consensus       331 fD~Vl~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tc  390 (450)
T 2yxl_A          331 ADKVLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTC  390 (450)
T ss_dssp             EEEEEEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEES
T ss_pred             CCEEEEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence            999984   433  1                          3567778999999986543

>1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=95.54  E-value=0.024  Score=52.33  Aligned_cols=42  Identities=24%  Similarity=0.339  Sum_probs=35.0

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHH
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFL  274 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~  274 (392)
                      .|.++||+||+|++|.+.+..+.. .|++|+++++++++++.+
T Consensus        25 ~~k~vlVTGas~gIG~aia~~L~~-~G~~V~~~~r~~~~~~~~   66 (297)
T 1xhl_A           25 SGKSVIITGSSNGIGRSAAVIFAK-EGAQVTITGRNEDRLEET   66 (297)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHH
Confidence            578999999999999998877666 499999999987766543

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=95.53  E-value=0.034  Score=48.78  Aligned_cols=117  Identities=15%  Similarity=0.202  Sum_probs=76.0

Q ss_pred             hcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHh----cCC-cEEEeCCCCccccC-CCCccEE
Q 016265          227 RTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKS----LGA-DLAIDYTKDNFEDL-PEKFDVV  300 (392)
Q Consensus       227 ~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~----~G~-~~vi~~~~~~~~~~-~~~~D~v  300 (392)
                      ...+++|++||=+| +|..|..+..+++.. +.+++.++.+++.++.+++    .|. -.++..+-..+... .+.||+|
T Consensus        50 ~~~~~~~~~vLDlG-~G~~G~~~~~la~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~I  127 (230)
T 3evz_A           50 KTFLRGGEVALEIG-TGHTAMMALMAEKFF-NCKVTATEVDEEFFEYARRNIERNNSNVRLVKSNGGIIKGVVEGTFDVI  127 (230)
T ss_dssp             HTTCCSSCEEEEEC-CTTTCHHHHHHHHHH-CCEEEEEECCHHHHHHHHHHHHHTTCCCEEEECSSCSSTTTCCSCEEEE
T ss_pred             HhhcCCCCEEEEcC-CCHHHHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEeCCchhhhhcccCceeEE
Confidence            34467899999997 775788889999874 8899999999888777653    343 12333221112222 2579999


Q ss_pred             EecC----------------------c------cHHHHHHhcccCCeEEEEcCCCCCCceEEEEeecHHHHHHHHHHHHC
Q 016265          301 YDAI----------------------G------QCDRAVKAIKEGGTVVALTGAVTPPGFRFVVTSNGEVLKKLNPYLES  352 (392)
Q Consensus       301 id~~----------------------G------~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~  352 (392)
                      +-..                      |      .++.+.+.|++||+++.+.            .......+++.+++.+
T Consensus       128 ~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~------------~~~~~~~~~~~~~l~~  195 (230)
T 3evz_A          128 FSAPPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYL------------PDKEKLLNVIKERGIK  195 (230)
T ss_dssp             EECCCCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEE------------ESCHHHHHHHHHHHHH
T ss_pred             EECCCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEe------------cccHhHHHHHHHHHHH
Confidence            8431                      1      1467778899999987652            1233456667777766


Q ss_pred             CCccc
Q 016265          353 GKVKP  357 (392)
Q Consensus       353 g~l~~  357 (392)
                      ..+..
T Consensus       196 ~g~~~  200 (230)
T 3evz_A          196 LGYSV  200 (230)
T ss_dssp             TTCEE
T ss_pred             cCCce
Confidence            55543

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=95.53  E-value=0.028  Score=49.41  Aligned_cols=92  Identities=12%  Similarity=0.115  Sum_probs=64.9

Q ss_pred             CCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCc-EEEeCCC-CccccC-CCCccEEEecCc-
Q 016265          230 FSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGAD-LAIDYTK-DNFEDL-PEKFDVVYDAIG-  305 (392)
Q Consensus       230 ~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~-~vi~~~~-~~~~~~-~~~~D~vid~~G-  305 (392)
                      +.++++||=+| +| .|..+..+++.  |++++.++.++..++.+++.... .++..+- +..... .+.||+|+.... 
T Consensus        46 ~~~~~~vLDiG-cG-~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~~fD~v~~~~~~  121 (226)
T 3m33_A           46 LTPQTRVLEAG-CG-HGPDAARFGPQ--AARWAAYDFSPELLKLARANAPHADVYEWNGKGELPAGLGAPFGLIVSRRGP  121 (226)
T ss_dssp             CCTTCEEEEES-CT-TSHHHHHHGGG--SSEEEEEESCHHHHHHHHHHCTTSEEEECCSCSSCCTTCCCCEEEEEEESCC
T ss_pred             CCCCCeEEEeC-CC-CCHHHHHHHHc--CCEEEEEECCHHHHHHHHHhCCCceEEEcchhhccCCcCCCCEEEEEeCCCH
Confidence            46889999997 44 48888888874  88999999999988888765322 2222222 111111 357999997644 


Q ss_pred             --cHHHHHHhcccCCeEEEEcC
Q 016265          306 --QCDRAVKAIKEGGTVVALTG  325 (392)
Q Consensus       306 --~~~~~~~~l~~~G~iv~~g~  325 (392)
                        .+..+.++|+|||+++..+.
T Consensus       122 ~~~l~~~~~~LkpgG~l~~~~~  143 (226)
T 3m33_A          122 TSVILRLPELAAPDAHFLYVGP  143 (226)
T ss_dssp             SGGGGGHHHHEEEEEEEEEEES
T ss_pred             HHHHHHHHHHcCCCcEEEEeCC
Confidence              46889999999999995543

>4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A

Probab=95.52  E-value=0.028  Score=50.89  Aligned_cols=73  Identities=16%  Similarity=0.255  Sum_probs=47.3

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCC-cccHHH----HHhcCCcE-EEeCCCCcc---cc-------CCC
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSS-TRNLEF----LKSLGADL-AIDYTKDNF---ED-------LPE  295 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~-~~~~~~----~~~~G~~~-vi~~~~~~~---~~-------~~~  295 (392)
                      .|++|||+||+|++|...++.... .|++|+++.++ +++.+.    +++.|... ++..+-.+.   .+       ...
T Consensus        28 ~~k~vlITGas~gIG~~la~~l~~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g  106 (271)
T 4iin_A           28 TGKNVLITGASKGIGAEIAKTLAS-MGLKVWINYRSNAEVADALKNELEEKGYKAAVIKFDAASESDFIEAIQTIVQSDG  106 (271)
T ss_dssp             SCCEEEETTCSSHHHHHHHHHHHH-TTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHH-CCCEEEEEeCCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHhcC
Confidence            578999999999999987776666 49999999884 433333    23445332 232222221   11       124


Q ss_pred             CccEEEecCc
Q 016265          296 KFDVVYDAIG  305 (392)
Q Consensus       296 ~~D~vid~~G  305 (392)
                      ++|++|++.|
T Consensus       107 ~id~li~nAg  116 (271)
T 4iin_A          107 GLSYLVNNAG  116 (271)
T ss_dssp             SCCEEEECCC
T ss_pred             CCCEEEECCC
Confidence            7999999977

>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti}

Probab=95.51  E-value=0.041  Score=50.18  Aligned_cols=74  Identities=16%  Similarity=0.223  Sum_probs=48.1

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeC-CcccHHHH----HhcCCcE-EE--eCCCCc-cccC-------C
Q 016265          231 SAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATS-STRNLEFL----KSLGADL-AI--DYTKDN-FEDL-------P  294 (392)
Q Consensus       231 ~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~-~~~~~~~~----~~~G~~~-vi--~~~~~~-~~~~-------~  294 (392)
                      -.|.++||+||+|++|.+.++.+.. .|++|+++++ ++++.+.+    ++.|... .+  |..+.. +.+.       -
T Consensus        27 ~~~k~~lVTGas~GIG~aia~~la~-~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~  105 (280)
T 4da9_A           27 KARPVAIVTGGRRGIGLGIARALAA-SGFDIAITGIGDAEGVAPVIAELSGLGARVIFLRADLADLSSHQATVDAVVAEF  105 (280)
T ss_dssp             CCCCEEEEETTTSHHHHHHHHHHHH-TTCEEEEEESCCHHHHHHHHHHHHHTTCCEEEEECCTTSGGGHHHHHHHHHHHH
T ss_pred             cCCCEEEEecCCCHHHHHHHHHHHH-CCCeEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHc
Confidence            4578999999999999998877666 4999999885 55544432    3345432 22  332221 1111       2


Q ss_pred             CCccEEEecCc
Q 016265          295 EKFDVVYDAIG  305 (392)
Q Consensus       295 ~~~D~vid~~G  305 (392)
                      +++|++|++.|
T Consensus       106 g~iD~lvnnAg  116 (280)
T 4da9_A          106 GRIDCLVNNAG  116 (280)
T ss_dssp             SCCCEEEEECC
T ss_pred             CCCCEEEECCC
Confidence            37899999876

>2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus}

Probab=95.51  E-value=0.031  Score=49.63  Aligned_cols=41  Identities=22%  Similarity=0.157  Sum_probs=33.9

Q ss_pred             CCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHH
Q 016265          233 GKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFL  274 (392)
Q Consensus       233 g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~  274 (392)
                      +.+++|+||+|++|...+..+.. .|++|+++++++++.+.+
T Consensus         2 ~k~vlItGasggiG~~~a~~l~~-~G~~V~~~~r~~~~~~~~   42 (250)
T 2cfc_A            2 SRVAIVTGASSGNGLAIATRFLA-RGDRVAALDLSAETLEET   42 (250)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHH
T ss_pred             CCEEEEeCCCchHHHHHHHHHHH-CCCEEEEEeCCHHHHHHH
Confidence            57899999999999998877666 499999999887766544

>1gz6_A Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MFE-2, beta-oxidation, peroxisome, SDR, steroid biosynthesis, oxidoreductase, NADP; HET: NAI; 2.38A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1zbq_A*

Probab=95.49  E-value=0.034  Score=51.86  Aligned_cols=73  Identities=22%  Similarity=0.308  Sum_probs=49.1

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeC---------CcccHHH----HHhcCCcEEEeCCCCc-ccc-----
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATS---------STRNLEF----LKSLGADLAIDYTKDN-FED-----  292 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~---------~~~~~~~----~~~~G~~~vi~~~~~~-~~~-----  292 (392)
                      .|.++||+||+|++|...++.+.. .|++|++.+.         +.++.+.    +++.|...+.|..+.. +.+     
T Consensus         8 ~gk~~lVTGas~GIG~~~a~~La~-~Ga~Vv~~~~~~~~~~~~R~~~~~~~~~~~l~~~~~~~~~D~~~~~~~~~~~~~~   86 (319)
T 1gz6_A            8 DGRVVLVTGAGGGLGRAYALAFAE-RGALVVVNDLGGDFKGVGKGSSAADKVVEEIRRRGGKAVANYDSVEAGEKLVKTA   86 (319)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHH-TTCEEEEECCCBCTTSCBCCSHHHHHHHHHHHHTTCEEEEECCCGGGHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHH-CCCEEEEEcCCcccccccCCHHHHHHHHHHHHhhCCeEEEeCCCHHHHHHHHHHH
Confidence            478999999999999998877666 4999988753         3444332    3344555556655432 111     


Q ss_pred             --CCCCccEEEecCc
Q 016265          293 --LPEKFDVVYDAIG  305 (392)
Q Consensus       293 --~~~~~D~vid~~G  305 (392)
                        ..+++|++|++.|
T Consensus        87 ~~~~g~iD~lVnnAG  101 (319)
T 1gz6_A           87 LDTFGRIDVVVNNAG  101 (319)
T ss_dssp             HHHTSCCCEEEECCC
T ss_pred             HHHcCCCCEEEECCC
Confidence              1347899999876

>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}

Probab=95.47  E-value=0.04  Score=50.26  Aligned_cols=87  Identities=21%  Similarity=0.250  Sum_probs=56.6

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCC-eEEEEeCCcccHHHH-HhcCC--cEEEeCCCCccccCCCCccEEEecCcc-
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGA-SRVAATSSTRNLEFL-KSLGA--DLAIDYTKDNFEDLPEKFDVVYDAIGQ-  306 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~-~vv~~~~~~~~~~~~-~~~G~--~~vi~~~~~~~~~~~~~~D~vid~~G~-  306 (392)
                      .|.+++|+| +|++|.+++..+... |+ +++++.++.+|.+.+ ++++.  ..++...  +...  ..+|+||+|++. 
T Consensus       119 ~~k~~lvlG-aGg~~~aia~~L~~~-G~~~v~i~~R~~~~a~~la~~~~~~~~~~~~~~--~l~~--~~~DivInaTp~g  192 (272)
T 3pwz_A          119 RNRRVLLLG-AGGAVRGALLPFLQA-GPSELVIANRDMAKALALRNELDHSRLRISRYE--ALEG--QSFDIVVNATSAS  192 (272)
T ss_dssp             TTSEEEEEC-CSHHHHHHHHHHHHT-CCSEEEEECSCHHHHHHHHHHHCCTTEEEECSG--GGTT--CCCSEEEECSSGG
T ss_pred             cCCEEEEEC-ccHHHHHHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHhccCCeeEeeHH--Hhcc--cCCCEEEECCCCC
Confidence            588999998 799999988877774 86 788888888876544 45553  2222221  1111  679999999862 


Q ss_pred             HH-----HHHHhcccCCeEEEEc
Q 016265          307 CD-----RAVKAIKEGGTVVALT  324 (392)
Q Consensus       307 ~~-----~~~~~l~~~G~iv~~g  324 (392)
                      +.     .-.+.++++..++++.
T Consensus       193 m~~~~~~i~~~~l~~~~~V~Dlv  215 (272)
T 3pwz_A          193 LTADLPPLPADVLGEAALAYELA  215 (272)
T ss_dssp             GGTCCCCCCGGGGTTCSEEEESS
T ss_pred             CCCCCCCCCHHHhCcCCEEEEee
Confidence            11     1124566666666553

>2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin, rossman fold, chorismate metabolism, short-CHA oxidoreductase, tetramer; 2.00A {Escherichia coli}

Probab=95.47  E-value=0.035  Score=49.57  Aligned_cols=68  Identities=18%  Similarity=0.256  Sum_probs=45.3

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEE--eCCCCc-cccC-------CCCccEEE
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAI--DYTKDN-FEDL-------PEKFDVVY  301 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi--~~~~~~-~~~~-------~~~~D~vi  301 (392)
                      .|.++||+||+|++|.+.+..+.. .|++|++++++.+.    ++.|. ..+  |..+.. +.+.       .+++|++|
T Consensus         6 ~~k~vlVTGas~giG~~ia~~l~~-~G~~V~~~~r~~~~----~~~~~-~~~~~D~~d~~~~~~~~~~~~~~~g~id~lv   79 (250)
T 2fwm_X            6 SGKNVWVTGAGKGIGYATALAFVE-AGAKVTGFDQAFTQ----EQYPF-ATEVMDVADAAQVAQVCQRLLAETERLDALV   79 (250)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHH-TTCEEEEEESCCCS----SCCSS-EEEECCTTCHHHHHHHHHHHHHHCSCCCEEE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHH-CCCEEEEEeCchhh----hcCCc-eEEEcCCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence            468999999999999998887766 49999999887552    22332 222  332221 1111       24789999


Q ss_pred             ecCc
Q 016265          302 DAIG  305 (392)
Q Consensus       302 d~~G  305 (392)
                      ++.|
T Consensus        80 ~~Ag   83 (250)
T 2fwm_X           80 NAAG   83 (250)
T ss_dssp             ECCC
T ss_pred             ECCC
Confidence            9876

>2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa}

Probab=95.46  E-value=0.029  Score=51.03  Aligned_cols=71  Identities=18%  Similarity=0.279  Sum_probs=47.5

Q ss_pred             CeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHH-hcCC--c-EEE--eCCCCc-cc----cC---CCCccE
Q 016265          234 KSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLK-SLGA--D-LAI--DYTKDN-FE----DL---PEKFDV  299 (392)
Q Consensus       234 ~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~-~~G~--~-~vi--~~~~~~-~~----~~---~~~~D~  299 (392)
                      .++||+||+|++|.+.++.+.. .|++|+++++++++++.+. ++..  . ..+  |..+.. +.    +.   -+++|+
T Consensus        22 k~vlVTGas~gIG~aia~~La~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~  100 (272)
T 2nwq_A           22 STLFITGATSGFGEACARRFAE-AGWSLVLTGRREERLQALAGELSAKTRVLPLTLDVRDRAAMSAAVDNLPEEFATLRG  100 (272)
T ss_dssp             CEEEESSTTTSSHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHTTTSCEEEEECCTTCHHHHHHHHHTCCGGGSSCCE
T ss_pred             cEEEEeCCCCHHHHHHHHHHHH-CCCEEEEEECCHHHHHHHHHHhhcCCcEEEEEcCCCCHHHHHHHHHHHHHHhCCCCE
Confidence            7899999999999998877666 4999999999887766543 3321  1 222  332221 11    11   236899


Q ss_pred             EEecCc
Q 016265          300 VYDAIG  305 (392)
Q Consensus       300 vid~~G  305 (392)
                      +|++.|
T Consensus       101 lvnnAG  106 (272)
T 2nwq_A          101 LINNAG  106 (272)
T ss_dssp             EEECCC
T ss_pred             EEECCC
Confidence            999876

>3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural genomics, putative 3-oxoacyl-(acyl carrier protei reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus anthracis str}

Probab=95.45  E-value=0.021  Score=50.98  Aligned_cols=40  Identities=25%  Similarity=0.276  Sum_probs=31.0

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEe-CCcccHH
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAAT-SSTRNLE  272 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~-~~~~~~~  272 (392)
                      .|+++||+||++++|.+.++.... .|++++++. ++.++.+
T Consensus         6 ~~k~vlITGas~gIG~~~a~~l~~-~G~~v~~~~~~~~~~~~   46 (255)
T 3icc_A            6 KGKVALVTGASRGIGRAIAKRLAN-DGALVAIHYGNRKEEAE   46 (255)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHH-TTCEEEEEESSCSHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHH-CCCeEEEEeCCchHHHH
Confidence            578999999999999997777666 499988864 4544443

>2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A*

Probab=95.45  E-value=0.038  Score=49.92  Aligned_cols=73  Identities=26%  Similarity=0.494  Sum_probs=47.9

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHH-HhcCC--c-EEE--eCCCCc-cccC-------CCCc
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFL-KSLGA--D-LAI--DYTKDN-FEDL-------PEKF  297 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~-~~~G~--~-~vi--~~~~~~-~~~~-------~~~~  297 (392)
                      .+.+|||+||+|++|...++.+.. .|++|++++++.++.+.+ ++++.  . .++  |..+.. +.+.       .+++
T Consensus        15 ~~k~vlITGasggiG~~~a~~l~~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   93 (278)
T 2bgk_A           15 QDKVAIITGGAGGIGETTAKLFVR-YGAKVVIADIADDHGQKVCNNIGSPDVISFVHCDVTKDEDVRNLVDTTIAKHGKL   93 (278)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             cCCEEEEECCCCHHHHHHHHHHHH-CCCEEEEEcCChhHHHHHHHHhCCCCceEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence            478999999999999998877666 499999998877665443 34432  1 222  322211 1111       1378


Q ss_pred             cEEEecCc
Q 016265          298 DVVYDAIG  305 (392)
Q Consensus       298 D~vid~~G  305 (392)
                      |++|++.|
T Consensus        94 d~li~~Ag  101 (278)
T 2bgk_A           94 DIMFGNVG  101 (278)
T ss_dssp             CEEEECCC
T ss_pred             CEEEECCc
Confidence            99998876

>2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum}

Probab=95.42  E-value=0.028  Score=49.82  Aligned_cols=73  Identities=22%  Similarity=0.398  Sum_probs=46.1

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEE-eCCcccHHHH----HhcCCcE-EE--eCCCCc-cccC-------CC
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAA-TSSTRNLEFL----KSLGADL-AI--DYTKDN-FEDL-------PE  295 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~-~~~~~~~~~~----~~~G~~~-vi--~~~~~~-~~~~-------~~  295 (392)
                      .|.+|||+||+|++|...++.+.. .|++|+++ .+++++.+.+    ++.|... .+  |..+.. +.+.       .+
T Consensus         4 ~~~~vlItGasggiG~~~a~~l~~-~G~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   82 (247)
T 2hq1_A            4 KGKTAIVTGSSRGLGKAIAWKLGN-MGANIVLNGSPASTSLDATAEEFKAAGINVVVAKGDVKNPEDVENMVKTAMDAFG   82 (247)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHH-TTCEEEEEECTTCSHHHHHHHHHHHTTCCEEEEESCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCcEEEEECCCchHHHHHHHHHHH-CCCEEEEEcCcCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHhcC
Confidence            468999999999999998877766 49999888 4555554432    3335332 22  322211 1111       13


Q ss_pred             CccEEEecCc
Q 016265          296 KFDVVYDAIG  305 (392)
Q Consensus       296 ~~D~vid~~G  305 (392)
                      ++|++|++.|
T Consensus        83 ~~d~vi~~Ag   92 (247)
T 2hq1_A           83 RIDILVNNAG   92 (247)
T ss_dssp             CCCEEEECC-
T ss_pred             CCCEEEECCC
Confidence            7899999876

>3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A*

Probab=95.42  E-value=0.049  Score=49.55  Aligned_cols=74  Identities=19%  Similarity=0.226  Sum_probs=47.6

Q ss_pred             CCCCeEEEEcCC--CcHHHHHHHHHHHhcCCeEEEEeCCc--ccHHHHH-hcCCcEEE--eCCCCc-ccc-------CCC
Q 016265          231 SAGKSILVLNGS--GGVGSLVIQLAKQVFGASRVAATSST--RNLEFLK-SLGADLAI--DYTKDN-FED-------LPE  295 (392)
Q Consensus       231 ~~g~~VlI~Ga~--G~vG~~aiqlak~~~G~~vv~~~~~~--~~~~~~~-~~G~~~vi--~~~~~~-~~~-------~~~  295 (392)
                      -.|.+|||+||+  +++|...++.... .|++|++++++.  ++++.+. +.+....+  |..+.. +.+       ..+
T Consensus        24 l~~k~vlVTGasg~~GIG~~ia~~l~~-~G~~V~~~~r~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g  102 (280)
T 3nrc_A           24 LAGKKILITGLLSNKSIAYGIAKAMHR-EGAELAFTYVGQFKDRVEKLCAEFNPAAVLPCDVISDQEIKDLFVELGKVWD  102 (280)
T ss_dssp             TTTCEEEECCCCSTTCHHHHHHHHHHH-TTCEEEEEECTTCHHHHHHHHGGGCCSEEEECCTTCHHHHHHHHHHHHHHCS
T ss_pred             cCCCEEEEECCCCCCCHHHHHHHHHHH-cCCEEEEeeCchHHHHHHHHHHhcCCceEEEeecCCHHHHHHHHHHHHHHcC
Confidence            457899999988  6699987776656 499999998876  4455443 33432333  322211 111       124


Q ss_pred             CccEEEecCc
Q 016265          296 KFDVVYDAIG  305 (392)
Q Consensus       296 ~~D~vid~~G  305 (392)
                      ++|++|++.|
T Consensus       103 ~id~li~nAg  112 (280)
T 3nrc_A          103 GLDAIVHSIA  112 (280)
T ss_dssp             SCCEEEECCC
T ss_pred             CCCEEEECCc
Confidence            7899999876

>2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A {Chlorobium tepidum} SCOP: c.2.1.2

Probab=95.42  E-value=0.043  Score=48.58  Aligned_cols=72  Identities=17%  Similarity=0.211  Sum_probs=46.9

Q ss_pred             CCeEEEEcCCCcHHHHHHHHHHHhcCC-------eEEEEeCCcccHHHHH-h---cCCcE-EE--eCCCCc-ccc-----
Q 016265          233 GKSILVLNGSGGVGSLVIQLAKQVFGA-------SRVAATSSTRNLEFLK-S---LGADL-AI--DYTKDN-FED-----  292 (392)
Q Consensus       233 g~~VlI~Ga~G~vG~~aiqlak~~~G~-------~vv~~~~~~~~~~~~~-~---~G~~~-vi--~~~~~~-~~~-----  292 (392)
                      +.+|||+||+|++|...+..+.. .|+       +|++++++.++.+.+. +   .+... .+  |..+.. +.+     
T Consensus         2 ~k~vlITGasggiG~~la~~l~~-~G~~~~~~~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~   80 (244)
T 2bd0_A            2 KHILLITGAGKGIGRAIALEFAR-AARHHPDFEPVLVLSSRTAADLEKISLECRAEGALTDTITADISDMADVRRLTTHI   80 (244)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHH-HTTTCTTCCEEEEEEESCHHHHHHHHHHHHTTTCEEEEEECCTTSHHHHHHHHHHH
T ss_pred             CCEEEEECCCChHHHHHHHHHHH-hcCcccccceEEEEEeCCHHHHHHHHHHHHccCCeeeEEEecCCCHHHHHHHHHHH
Confidence            56899999999999987776655 388       8888888877665443 2   24322 22  322211 111     


Q ss_pred             --CCCCccEEEecCc
Q 016265          293 --LPEKFDVVYDAIG  305 (392)
Q Consensus       293 --~~~~~D~vid~~G  305 (392)
                        ..+++|++|++.|
T Consensus        81 ~~~~g~id~li~~Ag   95 (244)
T 2bd0_A           81 VERYGHIDCLVNNAG   95 (244)
T ss_dssp             HHHTSCCSEEEECCC
T ss_pred             HHhCCCCCEEEEcCC
Confidence              1247999999876

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=95.41  E-value=0.038  Score=49.34  Aligned_cols=92  Identities=16%  Similarity=0.178  Sum_probs=62.9

Q ss_pred             cCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhc----CCc-EEEeCCCCccccCCCCccEEEe
Q 016265          228 TGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSL----GAD-LAIDYTKDNFEDLPEKFDVVYD  302 (392)
Q Consensus       228 ~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~----G~~-~vi~~~~~~~~~~~~~~D~vid  302 (392)
                      ..+.++.+||-+| +|. |..+..+++.  +.+++.++.++..++.+++.    ... .++..+-..+....+.||+|+.
T Consensus        35 ~~~~~~~~vLDiG-~G~-G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~  110 (263)
T 2yqz_A           35 HPKGEEPVFLELG-VGT-GRIALPLIAR--GYRYIALDADAAMLEVFRQKIAGVDRKVQVVQADARAIPLPDESVHGVIV  110 (263)
T ss_dssp             CCSSSCCEEEEET-CTT-STTHHHHHTT--TCEEEEEESCHHHHHHHHHHTTTSCTTEEEEESCTTSCCSCTTCEEEEEE
T ss_pred             cCCCCCCEEEEeC-CcC-CHHHHHHHHC--CCEEEEEECCHHHHHHHHHHhhccCCceEEEEcccccCCCCCCCeeEEEE
Confidence            3578899999997 554 8888888874  78999999999888888754    111 1222222222112346999997


Q ss_pred             cCc---------cHHHHHHhcccCCeEEEE
Q 016265          303 AIG---------QCDRAVKAIKEGGTVVAL  323 (392)
Q Consensus       303 ~~G---------~~~~~~~~l~~~G~iv~~  323 (392)
                      ...         .+..+.++|+|||+++..
T Consensus       111 ~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~  140 (263)
T 2yqz_A          111 VHLWHLVPDWPKVLAEAIRVLKPGGALLEG  140 (263)
T ss_dssp             ESCGGGCTTHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CCchhhcCCHHHHHHHHHHHCCCCcEEEEE
Confidence            532         146788899999998765

>2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase; 1.99A {Streptomyces coelicolor}

Probab=95.40  E-value=0.028  Score=50.50  Aligned_cols=39  Identities=21%  Similarity=0.281  Sum_probs=32.4

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccH
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNL  271 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~  271 (392)
                      .+.++||+||+|++|.+.++.+.. .|++|++++++++++
T Consensus        20 ~~k~vlVTGas~gIG~aia~~l~~-~G~~V~~~~r~~~~~   58 (253)
T 2nm0_A           20 MSRSVLVTGGNRGIGLAIARAFAD-AGDKVAITYRSGEPP   58 (253)
T ss_dssp             CCCEEEEETTTSHHHHHHHHHHHH-TTCEEEEEESSSCCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHH-CCCEEEEEeCChHhh
Confidence            478999999999999998877666 499999998876554

>2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis}

Probab=95.40  E-value=0.047  Score=55.66  Aligned_cols=73  Identities=16%  Similarity=0.214  Sum_probs=48.3

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCc---------ccHH----HHHhcCCcEEEeCCCCc-ccc-----
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSST---------RNLE----FLKSLGADLAIDYTKDN-FED-----  292 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~---------~~~~----~~~~~G~~~vi~~~~~~-~~~-----  292 (392)
                      .|++++|+||++++|.+.++.... .|++|++.+++.         ++.+    .+++.|...+.|..+.. ..+     
T Consensus         7 ~gkvalVTGas~GIG~a~A~~la~-~Ga~Vv~~~~~~~~~~~gr~~~~~~~~~~~i~~~g~~~~~d~~d~~~~~~~v~~~   85 (604)
T 2et6_A            7 KDKVVIITGAGGGLGKYYSLEFAK-LGAKVVVNDLGGALNGQGGNSKAADVVVDEIVKNGGVAVADYNNVLDGDKIVETA   85 (604)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHH-TTCEEEEECC-----------CHHHHHHHHHHHTTCEEEEECCCTTCHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHH-cCCEEEEEeCCccccccccchHHHHHHHHHHHhcCCeEEEEcCCHHHHHHHHHHH
Confidence            478999999999999998777666 499999887543         3333    23344655555654432 111     


Q ss_pred             --CCCCccEEEecCc
Q 016265          293 --LPEKFDVVYDAIG  305 (392)
Q Consensus       293 --~~~~~D~vid~~G  305 (392)
                        .-+++|++|++.|
T Consensus        86 ~~~~G~iDiLVnNAG  100 (604)
T 2et6_A           86 VKNFGTVHVIINNAG  100 (604)
T ss_dssp             HHHHSCCCEEEECCC
T ss_pred             HHHcCCCCEEEECCC
Confidence              1246899999987

>2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ...

Probab=95.38  E-value=0.036  Score=50.70  Aligned_cols=41  Identities=12%  Similarity=0.079  Sum_probs=33.4

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCc-ccHHH
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSST-RNLEF  273 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~-~~~~~  273 (392)
                      .|.++||+||+|++|.+.++.+.. .|++|++++++. ++.+.
T Consensus        22 ~~k~~lVTGas~gIG~aia~~L~~-~G~~V~~~~r~~~~~~~~   63 (288)
T 2x9g_A           22 EAPAAVVTGAAKRIGRAIAVKLHQ-TGYRVVIHYHNSAEAAVS   63 (288)
T ss_dssp             CCCEEEETTCSSHHHHHHHHHHHH-HTCEEEEEESSCHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHH-CCCeEEEEeCCchHHHHH
Confidence            478999999999999998876666 499999999877 65543

>3s8m_A Enoyl-ACP reductase; rossmann fold, oxidoreductase, NADH binding, fatty acid SYNT enoyl-ACP; 1.60A {Xanthomonas oryzae PV}

Probab=95.37  E-value=0.044  Score=52.99  Aligned_cols=78  Identities=22%  Similarity=0.177  Sum_probs=49.4

Q ss_pred             hcCC-CCCCeEEEEcCCCcHHHHHHHHHHH-hcCCeEEEEeCCcccH----------------HHHHhcCCcE-EE--eC
Q 016265          227 RTGF-SAGKSILVLNGSGGVGSLVIQLAKQ-VFGASRVAATSSTRNL----------------EFLKSLGADL-AI--DY  285 (392)
Q Consensus       227 ~~~~-~~g~~VlI~Ga~G~vG~~aiqlak~-~~G~~vv~~~~~~~~~----------------~~~~~~G~~~-vi--~~  285 (392)
                      ...+ +.|+++||+||++++|++.+..+.. . |++|+++.++.++.                +.+++.|... .+  |-
T Consensus        54 ~~~~~~~gKvaLVTGASsGIG~AiA~~LA~~~-GA~Vv~~~r~~~~~~~~~~~ag~~n~~a~~~~~~~~G~~a~~i~~Dv  132 (422)
T 3s8m_A           54 RGVRNDGPKKVLVIGASSGYGLASRITAAFGF-GADTLGVFFEKPGTASKAGTAGWYNSAAFDKHAKAAGLYSKSINGDA  132 (422)
T ss_dssp             TCCCSSSCSEEEEESCSSHHHHHHHHHHHHHH-CCEEEEEECCCCCCSSSCCCHHHHHHHHHHHHHHHTTCCEEEEESCT
T ss_pred             ccccccCCCEEEEECCChHHHHHHHHHHHHhC-CCEEEEEeCCchhhhhhhcccccchhHHHHHHHHhcCCcEEEEEecC
Confidence            3455 4578999999999999986655443 4 99999987654321                3456667543 23  32


Q ss_pred             CCCc-c-------ccCC-CCccEEEecCc
Q 016265          286 TKDN-F-------EDLP-EKFDVVYDAIG  305 (392)
Q Consensus       286 ~~~~-~-------~~~~-~~~D~vid~~G  305 (392)
                      .+.. .       .+.- +++|+++++.|
T Consensus       133 td~~~v~~~v~~i~~~~~G~IDiLVNNAG  161 (422)
T 3s8m_A          133 FSDAARAQVIELIKTEMGGQVDLVVYSLA  161 (422)
T ss_dssp             TSHHHHHHHHHHHHHHSCSCEEEEEECCC
T ss_pred             CCHHHHHHHHHHHHHHcCCCCCEEEEcCc
Confidence            2221 1       1113 67999999875

>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP}

Probab=95.35  E-value=0.026  Score=53.32  Aligned_cols=84  Identities=19%  Similarity=0.302  Sum_probs=62.0

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCCccccCCCCccEEEecCcc-----
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFEDLPEKFDVVYDAIGQ-----  306 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~~~~~~~D~vid~~G~-----  306 (392)
                      .|.+|.|+| .|.+|...++.++. +|.+|++.+++..+.+...  |+..+     .++.++.+..|+|+-++..     
T Consensus       172 ~gktvGIIG-lG~IG~~vA~~l~~-~G~~V~~~dr~~~~~~~~~--g~~~~-----~~l~ell~~sDvV~l~~Plt~~T~  242 (345)
T 4g2n_A          172 TGRRLGIFG-MGRIGRAIATRARG-FGLAIHYHNRTRLSHALEE--GAIYH-----DTLDSLLGASDIFLIAAPGRPELK  242 (345)
T ss_dssp             TTCEEEEES-CSHHHHHHHHHHHT-TTCEEEEECSSCCCHHHHT--TCEEC-----SSHHHHHHTCSEEEECSCCCGGGT
T ss_pred             CCCEEEEEE-eChhHHHHHHHHHH-CCCEEEEECCCCcchhhhc--CCeEe-----CCHHHHHhhCCEEEEecCCCHHHH
Confidence            368999998 99999999999998 6999999988765544332  44321     2344444568999988651     


Q ss_pred             --H-HHHHHhcccCCeEEEEc
Q 016265          307 --C-DRAVKAIKEGGTVVALT  324 (392)
Q Consensus       307 --~-~~~~~~l~~~G~iv~~g  324 (392)
                        + ...++.|+++..+|.++
T Consensus       243 ~li~~~~l~~mk~gailIN~a  263 (345)
T 4g2n_A          243 GFLDHDRIAKIPEGAVVINIS  263 (345)
T ss_dssp             TCBCHHHHHHSCTTEEEEECS
T ss_pred             HHhCHHHHhhCCCCcEEEECC
Confidence              2 67788899998888775

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=95.35  E-value=0.053  Score=49.14  Aligned_cols=87  Identities=10%  Similarity=0.067  Sum_probs=61.3

Q ss_pred             CeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCCccccCCCCccEEEecCcc-------
Q 016265          234 KSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFEDLPEKFDVVYDAIGQ-------  306 (392)
Q Consensus       234 ~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~~~~~~~D~vid~~G~-------  306 (392)
                      .+|||+|+ |.+|...+..+.. .|.+|+++++++.+.+.+...+...+ ..+-.++.  .+++|+||.+.+.       
T Consensus         6 ~~ilVtGa-G~iG~~l~~~L~~-~g~~V~~~~r~~~~~~~~~~~~~~~~-~~D~~d~~--~~~~d~vi~~a~~~~~~~~~   80 (286)
T 3ius_A            6 GTLLSFGH-GYTARVLSRALAP-QGWRIIGTSRNPDQMEAIRASGAEPL-LWPGEEPS--LDGVTHLLISTAPDSGGDPV   80 (286)
T ss_dssp             CEEEEETC-CHHHHHHHHHHGG-GTCEEEEEESCGGGHHHHHHTTEEEE-ESSSSCCC--CTTCCEEEECCCCBTTBCHH
T ss_pred             CcEEEECC-cHHHHHHHHHHHH-CCCEEEEEEcChhhhhhHhhCCCeEE-Eecccccc--cCCCCEEEECCCccccccHH
Confidence            57999996 9999998888876 49999999999988887776665433 22222233  5689999999862       


Q ss_pred             HHHHHHhccc----CCeEEEEcC
Q 016265          307 CDRAVKAIKE----GGTVVALTG  325 (392)
Q Consensus       307 ~~~~~~~l~~----~G~iv~~g~  325 (392)
                      ....++.++.    -.++|.++.
T Consensus        81 ~~~l~~a~~~~~~~~~~~v~~Ss  103 (286)
T 3ius_A           81 LAALGDQIAARAAQFRWVGYLST  103 (286)
T ss_dssp             HHHHHHHHHHTGGGCSEEEEEEE
T ss_pred             HHHHHHHHHhhcCCceEEEEeec
Confidence            2444444433    267887753

>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}

Probab=95.34  E-value=0.027  Score=51.93  Aligned_cols=68  Identities=24%  Similarity=0.312  Sum_probs=45.8

Q ss_pred             CeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEE-EeCCCCccccCCCCccEEEecCc
Q 016265          234 KSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLA-IDYTKDNFEDLPEKFDVVYDAIG  305 (392)
Q Consensus       234 ~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~v-i~~~~~~~~~~~~~~D~vid~~G  305 (392)
                      .+|||+||+|.+|...++.+.. .|.+|+++++++.+.+ ++  +...+ .|...+.+.+..+++|+||.+.+
T Consensus         3 ~~vlVtGatG~iG~~l~~~L~~-~g~~V~~~~r~~~~~~-~~--~~~~~~~Dl~~~~~~~~~~~~d~Vih~a~   71 (311)
T 3m2p_A            3 LKIAVTGGTGFLGQYVVESIKN-DGNTPIILTRSIGNKA-IN--DYEYRVSDYTLEDLINQLNDVDAVVHLAA   71 (311)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHH-TTCEEEEEESCCC--------CCEEEECCCCHHHHHHHTTTCSEEEECCC
T ss_pred             CEEEEECCCcHHHHHHHHHHHh-CCCEEEEEeCCCCccc-CC--ceEEEEccccHHHHHHhhcCCCEEEEccc
Confidence            5899999999999998888877 4999999998855544 33  33322 13332223334568999999876

>1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A*

Probab=95.34  E-value=0.06  Score=50.84  Aligned_cols=93  Identities=20%  Similarity=0.211  Sum_probs=58.6

Q ss_pred             CCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccH--HHHHhc-CCcEE-Ee-CCCC-ccccCCCCccEEEecCcc
Q 016265          233 GKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNL--EFLKSL-GADLA-ID-YTKD-NFEDLPEKFDVVYDAIGQ  306 (392)
Q Consensus       233 g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~--~~~~~~-G~~~v-i~-~~~~-~~~~~~~~~D~vid~~G~  306 (392)
                      +.+|+|+||+|.+|...++.+.. .|.+|++++++..+.  +.+.+. +...+ .| ..+. .+.+..+++|+||.+.+.
T Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~-~g~~V~~~~R~~~~~~~~~l~~~~~v~~v~~D~l~d~~~l~~~~~~~d~Vi~~a~~   83 (352)
T 1xgk_A            5 KKTIAVVGATGRQGASLIRVAAA-VGHHVRAQVHSLKGLIAEELQAIPNVTLFQGPLLNNVPLMDTLFEGAHLAFINTTS   83 (352)
T ss_dssp             CCCEEEESTTSHHHHHHHHHHHH-TTCCEEEEESCSCSHHHHHHHTSTTEEEEESCCTTCHHHHHHHHTTCSEEEECCCS
T ss_pred             CCEEEEECCCCHHHHHHHHHHHh-CCCEEEEEECCCChhhHHHHhhcCCcEEEECCccCCHHHHHHHHhcCCEEEEcCCC
Confidence            56899999999999998877766 499999999877665  333333 32221 13 2222 233334579999977642


Q ss_pred             --------HHHHHHhccc-C--CeEEEEcCC
Q 016265          307 --------CDRAVKAIKE-G--GTVVALTGA  326 (392)
Q Consensus       307 --------~~~~~~~l~~-~--G~iv~~g~~  326 (392)
                              ...+++.++. +  ++||.++..
T Consensus        84 ~~~~~~~~~~~l~~aa~~~g~v~~~V~~SS~  114 (352)
T 1xgk_A           84 QAGDEIAIGKDLADAAKRAGTIQHYIYSSMP  114 (352)
T ss_dssp             TTSCHHHHHHHHHHHHHHHSCCSEEEEEECC
T ss_pred             CCcHHHHHHHHHHHHHHHcCCccEEEEeCCc
Confidence                    1334444433 3  588888653

>3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium}

Probab=95.34  E-value=0.031  Score=52.06  Aligned_cols=36  Identities=22%  Similarity=0.316  Sum_probs=30.3

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCC
Q 016265          231 SAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSS  267 (392)
Q Consensus       231 ~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~  267 (392)
                      -.|+++||+||+|++|.+.+..+.. .|++|++++++
T Consensus        25 l~gk~vlVTGas~GIG~aia~~la~-~G~~Vv~~~r~   60 (322)
T 3qlj_A           25 VDGRVVIVTGAGGGIGRAHALAFAA-EGARVVVNDIG   60 (322)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHH-TTCEEEEECCC
T ss_pred             cCCCEEEEECCCcHHHHHHHHHHHH-CCCEEEEEeCc
Confidence            3578999999999999997776656 49999998875

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=95.33  E-value=0.14  Score=48.70  Aligned_cols=101  Identities=17%  Similarity=0.200  Sum_probs=65.4

Q ss_pred             HHHHHHhcC-CCCCCeEEEEcCCCcHHHHHHHHHHHhcCC-eEEEEeCC----ccc---------HHHHHhcCCcEEEeC
Q 016265          221 AYEGLERTG-FSAGKSILVLNGSGGVGSLVIQLAKQVFGA-SRVAATSS----TRN---------LEFLKSLGADLAIDY  285 (392)
Q Consensus       221 a~~al~~~~-~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~-~vv~~~~~----~~~---------~~~~~~~G~~~vi~~  285 (392)
                      .+.+++..+ --...+|+|+| +|..|..+++++..+ |+ ++++++++    .+|         ..++++...    ..
T Consensus       179 l~~A~~i~g~~l~~~kVVv~G-AGaAG~~iAkll~~~-G~~~I~v~Dr~Gli~~~R~~~~L~~~k~~~A~~~~~----~~  252 (388)
T 1vl6_A          179 FLNALKLTEKKIEEVKVVVNG-IGAAGYNIVKFLLDL-GVKNVVAVDRKGILNENDPETCLNEYHLEIARITNP----ER  252 (388)
T ss_dssp             HHHHHHHHTCCTTTCEEEEEC-CSHHHHHHHHHHHHH-TCCEEEEEETTEECCTTSGGGCSSHHHHHHHHTSCT----TC
T ss_pred             HHHHHHHhCCCCCCcEEEEEC-CCHHHHHHHHHHHhC-CCCeEEEEECCCcccCCCcccccCHHHHHHHHhhhc----cC
Confidence            344555444 23567899998 999999999999985 88 67778876    544         334443321    01


Q ss_pred             CCCccccCCCCccEEEecCc-c--HHHHHHhcccCCeEEEEcCCC
Q 016265          286 TKDNFEDLPEKFDVVYDAIG-Q--CDRAVKAIKEGGTVVALTGAV  327 (392)
Q Consensus       286 ~~~~~~~~~~~~D~vid~~G-~--~~~~~~~l~~~G~iv~~g~~~  327 (392)
                      ...++.+..+++|++|-+++ .  .++.++.|+++-.++.++.+.
T Consensus       253 ~~~~L~eav~~ADVlIG~Sap~l~t~emVk~Ma~~pIIfalSNPt  297 (388)
T 1vl6_A          253 LSGDLETALEGADFFIGVSRGNILKPEWIKKMSRKPVIFALANPV  297 (388)
T ss_dssp             CCSCHHHHHTTCSEEEECSCSSCSCHHHHTTSCSSCEEEECCSSS
T ss_pred             chhhHHHHHccCCEEEEeCCCCccCHHHHHhcCCCCEEEEcCCCC
Confidence            12334444557899998876 2  377888888877666665543

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=95.33  E-value=0.021  Score=52.47  Aligned_cols=91  Identities=19%  Similarity=0.182  Sum_probs=55.6

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHHHHhcCC-eEEEEeCCcccHHHH-HhcCC----cEEEeCCCCccccCCCCccEEEecC
Q 016265          231 SAGKSILVLNGSGGVGSLVIQLAKQVFGA-SRVAATSSTRNLEFL-KSLGA----DLAIDYTKDNFEDLPEKFDVVYDAI  304 (392)
Q Consensus       231 ~~g~~VlI~Ga~G~vG~~aiqlak~~~G~-~vv~~~~~~~~~~~~-~~~G~----~~vi~~~~~~~~~~~~~~D~vid~~  304 (392)
                      -.|.+++|+| +|++|.+++..+... |+ +++++.++.+|.+.+ ++++.    ..+.....+++.+....+|+||+|+
T Consensus       125 l~~k~vlVlG-aGG~g~aia~~L~~~-G~~~v~i~~R~~~~a~~la~~~~~~~~~~~i~~~~~~~l~~~l~~~DiVInaT  202 (283)
T 3jyo_A          125 AKLDSVVQVG-AGGVGNAVAYALVTH-GVQKLQVADLDTSRAQALADVINNAVGREAVVGVDARGIEDVIAAADGVVNAT  202 (283)
T ss_dssp             CCCSEEEEEC-CSHHHHHHHHHHHHT-TCSEEEEECSSHHHHHHHHHHHHHHHTSCCEEEECSTTHHHHHHHSSEEEECS
T ss_pred             cCCCEEEEEC-CcHHHHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhhcCCceEEEcCHHHHHHHHhcCCEEEECC
Confidence            4688999998 699999988877774 98 588888888876644 33321    1111111122333334689999997


Q ss_pred             c-cH------HHHHHhcccCCeEEEE
Q 016265          305 G-QC------DRAVKAIKEGGTVVAL  323 (392)
Q Consensus       305 G-~~------~~~~~~l~~~G~iv~~  323 (392)
                      . .+      ..-...++++..++++
T Consensus       203 p~Gm~~~~~~pi~~~~l~~~~~v~Dl  228 (283)
T 3jyo_A          203 PMGMPAHPGTAFDVSCLTKDHWVGDV  228 (283)
T ss_dssp             STTSTTSCSCSSCGGGCCTTCEEEEC
T ss_pred             CCCCCCCCCCCCCHHHhCCCCEEEEe
Confidence            5 21      1123456665555554

>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A*

Probab=95.32  E-value=0.042  Score=50.47  Aligned_cols=95  Identities=24%  Similarity=0.213  Sum_probs=64.3

Q ss_pred             ccchhHHHHHHHHHhcCC-CCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCCccc
Q 016265          213 GLPLAIETAYEGLERTGF-SAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFE  291 (392)
Q Consensus       213 ~l~~~~~ta~~al~~~~~-~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~  291 (392)
                      .+||........|++..+ -.|.+|+|+|++..+|.-+++++.. .|++|.++.+...                   +..
T Consensus       144 ~~PcTp~gi~~ll~~~~i~l~gk~vvVIG~s~iVG~p~A~lL~~-~gAtVtv~hs~t~-------------------~L~  203 (301)
T 1a4i_A          144 FIPCTPKGCLELIKETGVPIAGRHAVVVGRSKIVGAPMHDLLLW-NNATVTTCHSKTA-------------------HLD  203 (301)
T ss_dssp             CCCHHHHHHHHHHHTTTCCCTTCEEEEECCCTTTHHHHHHHHHH-TTCEEEEECTTCS-------------------SHH
T ss_pred             ccCchHHHHHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHHh-CCCeEEEEECCcc-------------------cHH
Confidence            346655555555665554 4789999999555789999999988 4998887754332                   223


Q ss_pred             cCCCCccEEEecCccHH-HHHHhcccCCeEEEEcCCC
Q 016265          292 DLPEKFDVVYDAIGQCD-RAVKAIKEGGTVVALTGAV  327 (392)
Q Consensus       292 ~~~~~~D~vid~~G~~~-~~~~~l~~~G~iv~~g~~~  327 (392)
                      +..+.+|+||.++|... ---+.+++|..++.+|...
T Consensus       204 ~~~~~ADIVI~Avg~p~~I~~~~vk~GavVIDVgi~~  240 (301)
T 1a4i_A          204 EEVNKGDILVVATGQPEMVKGEWIKPGAIVIDCGINY  240 (301)
T ss_dssp             HHHTTCSEEEECCCCTTCBCGGGSCTTCEEEECCCBC
T ss_pred             HHhccCCEEEECCCCcccCCHHHcCCCcEEEEccCCC
Confidence            33356799999988421 1123478899999887653

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=95.32  E-value=0.11  Score=45.63  Aligned_cols=93  Identities=20%  Similarity=0.211  Sum_probs=62.9

Q ss_pred             hcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCC-eEEEEeCCcccHHHHHhcCCc---EEEeCCCCccccCCCCccEEEe
Q 016265          227 RTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGA-SRVAATSSTRNLEFLKSLGAD---LAIDYTKDNFEDLPEKFDVVYD  302 (392)
Q Consensus       227 ~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~-~vv~~~~~~~~~~~~~~~G~~---~vi~~~~~~~~~~~~~~D~vid  302 (392)
                      .....++.+||-+| +|. |..+..+++.  |. +++.++.++..++.+++....   .++..+-.......+.+|+|+.
T Consensus        38 ~~~~~~~~~vLdiG-~G~-G~~~~~l~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~  113 (243)
T 3bkw_A           38 MLPEVGGLRIVDLG-CGF-GWFCRWAHEH--GASYVLGLDLSEKMLARARAAGPDTGITYERADLDKLHLPQDSFDLAYS  113 (243)
T ss_dssp             HSCCCTTCEEEEET-CTT-CHHHHHHHHT--TCSEEEEEESCHHHHHHHHHTSCSSSEEEEECCGGGCCCCTTCEEEEEE
T ss_pred             hccccCCCEEEEEc-CcC-CHHHHHHHHC--CCCeEEEEcCCHHHHHHHHHhcccCCceEEEcChhhccCCCCCceEEEE
Confidence            44566889999997 544 7788888874  66 899999999888888765432   1222111111111346999986


Q ss_pred             cCc---------cHHHHHHhcccCCeEEEE
Q 016265          303 AIG---------QCDRAVKAIKEGGTVVAL  323 (392)
Q Consensus       303 ~~G---------~~~~~~~~l~~~G~iv~~  323 (392)
                      ...         .+..+.++|++||+++..
T Consensus       114 ~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~  143 (243)
T 3bkw_A          114 SLALHYVEDVARLFRTVHQALSPGGHFVFS  143 (243)
T ss_dssp             ESCGGGCSCHHHHHHHHHHHEEEEEEEEEE
T ss_pred             eccccccchHHHHHHHHHHhcCcCcEEEEE
Confidence            532         147788899999998865

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}

Probab=95.32  E-value=0.065  Score=47.16  Aligned_cols=96  Identities=19%  Similarity=0.259  Sum_probs=61.0

Q ss_pred             HhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhc-CCeEEEEeCCccc----HHHHHhcCCcEEEeCCCCc---cccCCCCc
Q 016265          226 ERTGFSAGKSILVLNGSGGVGSLVIQLAKQVF-GASRVAATSSTRN----LEFLKSLGADLAIDYTKDN---FEDLPEKF  297 (392)
Q Consensus       226 ~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~-G~~vv~~~~~~~~----~~~~~~~G~~~vi~~~~~~---~~~~~~~~  297 (392)
                      +...++++++||-+| +|. |..+..+++... +.+++.++.++..    ++.+++..--..+..+-..   +....+.+
T Consensus        71 ~~~~~~~~~~vLDlG-~G~-G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~~  148 (233)
T 2ipx_A           71 DQIHIKPGAKVLYLG-AAS-GTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKRTNIIPVIEDARHPHKYRMLIAMV  148 (233)
T ss_dssp             SCCCCCTTCEEEEEC-CTT-SHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHCTTEEEECSCTTCGGGGGGGCCCE
T ss_pred             heecCCCCCEEEEEc-ccC-CHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhccCCeEEEEcccCChhhhcccCCcE
Confidence            345678999999997 555 889999998741 2688888888653    3444443211222222222   11234579


Q ss_pred             cEEEecCcc-------HHHHHHhcccCCeEEEE
Q 016265          298 DVVYDAIGQ-------CDRAVKAIKEGGTVVAL  323 (392)
Q Consensus       298 D~vid~~G~-------~~~~~~~l~~~G~iv~~  323 (392)
                      |+|+.....       +..+.+.|+|||+++..
T Consensus       149 D~V~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~  181 (233)
T 2ipx_A          149 DVIFADVAQPDQTRIVALNAHTFLRNGGHFVIS  181 (233)
T ss_dssp             EEEEECCCCTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             EEEEEcCCCccHHHHHHHHHHHHcCCCeEEEEE
Confidence            999975431       35688899999998763

>1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A*

Probab=95.31  E-value=0.041  Score=50.44  Aligned_cols=42  Identities=14%  Similarity=0.048  Sum_probs=34.6

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEe-CCcccHHHH
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAAT-SSTRNLEFL  274 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~-~~~~~~~~~  274 (392)
                      .|.++||+||+|++|.+.++.+.. .|++|++++ ++.++++.+
T Consensus         8 ~~k~~lVTGas~GIG~aia~~la~-~G~~V~~~~~r~~~~~~~~   50 (291)
T 1e7w_A            8 TVPVALVTGAAKRLGRSIAEGLHA-EGYAVCLHYHRSAAEANAL   50 (291)
T ss_dssp             CCCEEEETTCSSHHHHHHHHHHHH-TTCEEEEEESSCHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHH-CCCeEEEEcCCCHHHHHHH
Confidence            478999999999999998877766 499999999 887765543

>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}

Probab=95.30  E-value=0.021  Score=51.66  Aligned_cols=90  Identities=16%  Similarity=0.058  Sum_probs=60.4

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCCccccCCCCccEEEecCc-----
Q 016265          231 SAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFEDLPEKFDVVYDAIG-----  305 (392)
Q Consensus       231 ~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~~~~~~~D~vid~~G-----  305 (392)
                      ..+.+||=+| +| .|.++..+++.  +.+|+.++.+++-++.+++..--..+..+.+++.-..+.||+|+.+..     
T Consensus        38 ~~~~~vLDvG-cG-tG~~~~~l~~~--~~~v~gvD~s~~ml~~a~~~~~v~~~~~~~e~~~~~~~sfD~v~~~~~~h~~~  113 (257)
T 4hg2_A           38 PARGDALDCG-CG-SGQASLGLAEF--FERVHAVDPGEAQIRQALRHPRVTYAVAPAEDTGLPPASVDVAIAAQAMHWFD  113 (257)
T ss_dssp             SCSSEEEEES-CT-TTTTHHHHHTT--CSEEEEEESCHHHHHTCCCCTTEEEEECCTTCCCCCSSCEEEEEECSCCTTCC
T ss_pred             CCCCCEEEEc-CC-CCHHHHHHHHh--CCEEEEEeCcHHhhhhhhhcCCceeehhhhhhhcccCCcccEEEEeeehhHhh
Confidence            3457888887 55 58888888864  789999999987777665442222222222222212346999997643     


Q ss_pred             ---cHHHHHHhcccCCeEEEEc
Q 016265          306 ---QCDRAVKAIKEGGTVVALT  324 (392)
Q Consensus       306 ---~~~~~~~~l~~~G~iv~~g  324 (392)
                         .+.++.+.|+|||+++.+.
T Consensus       114 ~~~~~~e~~rvLkpgG~l~~~~  135 (257)
T 4hg2_A          114 LDRFWAELRRVARPGAVFAAVT  135 (257)
T ss_dssp             HHHHHHHHHHHEEEEEEEEEEE
T ss_pred             HHHHHHHHHHHcCCCCEEEEEE
Confidence               1478889999999998764

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=95.30  E-value=0.11  Score=48.23  Aligned_cols=97  Identities=18%  Similarity=0.204  Sum_probs=63.2

Q ss_pred             HhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhc-CCeEEEEeCCcccHHHHHh----cCCc--EEEeCCCCccccCCCCcc
Q 016265          226 ERTGFSAGKSILVLNGSGGVGSLVIQLAKQVF-GASRVAATSSTRNLEFLKS----LGAD--LAIDYTKDNFEDLPEKFD  298 (392)
Q Consensus       226 ~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~-G~~vv~~~~~~~~~~~~~~----~G~~--~vi~~~~~~~~~~~~~~D  298 (392)
                      ....+++|++||=.| +| .|..+.++++.+. +.+++.++.++.+++.+++    +|..  .++..+...+....+.||
T Consensus       112 ~~l~~~~g~~VLDlg-~G-~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~D~~~~~~~~~~fD  189 (315)
T 1ixk_A          112 VALDPKPGEIVADMA-AA-PGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEFD  189 (315)
T ss_dssp             HHHCCCTTCEEEECC-SS-CSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCCEE
T ss_pred             HHhCCCCCCEEEEeC-CC-CCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCCeEEEEECChhhcccccccCC
Confidence            344688999998886 44 4667777887642 3688999999998877653    4653  223222222222345799


Q ss_pred             EEEe---cCc--c--------------------------HHHHHHhcccCCeEEEEc
Q 016265          299 VVYD---AIG--Q--------------------------CDRAVKAIKEGGTVVALT  324 (392)
Q Consensus       299 ~vid---~~G--~--------------------------~~~~~~~l~~~G~iv~~g  324 (392)
                      +|+-   |+|  .                          ++.+.++|++||+++...
T Consensus       190 ~Il~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~st  246 (315)
T 1ixk_A          190 KILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYST  246 (315)
T ss_dssp             EEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEEEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEe
Confidence            9884   333  1                          256788899999998654

>2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A

Probab=95.28  E-value=0.042  Score=50.26  Aligned_cols=72  Identities=19%  Similarity=0.197  Sum_probs=49.6

Q ss_pred             CCeEEEEcCCCcHHHHHHHHHHHhcC-CeEEEEeCCcccH--HHHHhcCCcEEE-eCCCC-ccccCCCCccEEEecCc
Q 016265          233 GKSILVLNGSGGVGSLVIQLAKQVFG-ASRVAATSSTRNL--EFLKSLGADLAI-DYTKD-NFEDLPEKFDVVYDAIG  305 (392)
Q Consensus       233 g~~VlI~Ga~G~vG~~aiqlak~~~G-~~vv~~~~~~~~~--~~~~~~G~~~vi-~~~~~-~~~~~~~~~D~vid~~G  305 (392)
                      ..+|||+||+|.+|...++.+... | .+|+++++++.+.  +.+...|+..+. |..+. .+.+..+++|+||.+.|
T Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~-g~~~V~~~~R~~~~~~~~~l~~~~~~~~~~D~~d~~~l~~~~~~~d~vi~~a~   81 (299)
T 2wm3_A            5 KKLVVVFGGTGAQGGSVARTLLED-GTFKVRVVTRNPRKKAAKELRLQGAEVVQGDQDDQVIMELALNGAYATFIVTN   81 (299)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHH-CSSEEEEEESCTTSHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEEECCC
T ss_pred             CCEEEEECCCchHHHHHHHHHHhc-CCceEEEEEcCCCCHHHHHHHHCCCEEEEecCCCHHHHHHHHhcCCEEEEeCC
Confidence            468999999999999988776664 7 8999999877664  333445554322 33322 23333457999999986

>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile}

Probab=95.27  E-value=0.038  Score=51.43  Aligned_cols=36  Identities=25%  Similarity=0.195  Sum_probs=30.2

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCC
Q 016265          231 SAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSS  267 (392)
Q Consensus       231 ~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~  267 (392)
                      -.|+++||+||+|++|.+.++.... .|++|++++++
T Consensus        44 l~gk~~lVTGas~GIG~aia~~la~-~G~~Vv~~~~~   79 (317)
T 3oec_A           44 LQGKVAFITGAARGQGRTHAVRLAQ-DGADIVAIDLC   79 (317)
T ss_dssp             TTTCEEEESSCSSHHHHHHHHHHHH-TTCEEEEEECC
T ss_pred             cCCCEEEEeCCCcHHHHHHHHHHHH-CCCeEEEEecc
Confidence            3578999999999999998777666 49999998764

>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa}

Probab=95.26  E-value=0.017  Score=53.84  Aligned_cols=71  Identities=17%  Similarity=0.185  Sum_probs=47.7

Q ss_pred             CeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEE-EeCCC-CccccCCCCccEEEecCc
Q 016265          234 KSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLA-IDYTK-DNFEDLPEKFDVVYDAIG  305 (392)
Q Consensus       234 ~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~v-i~~~~-~~~~~~~~~~D~vid~~G  305 (392)
                      .+|||+||+|.+|...++.+.. .|.+|++++++..+.+.+.+.+...+ .|..+ +.+.+..+++|+||.+.|
T Consensus        14 M~ilVtGatG~iG~~l~~~L~~-~g~~V~~~~r~~~~~~~l~~~~~~~~~~Dl~d~~~~~~~~~~~d~vih~a~   86 (342)
T 2x4g_A           14 VKYAVLGATGLLGHHAARAIRA-AGHDLVLIHRPSSQIQRLAYLEPECRVAEMLDHAGLERALRGLDGVIFSAG   86 (342)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHH-TTCEEEEEECTTSCGGGGGGGCCEEEECCTTCHHHHHHHTTTCSEEEEC--
T ss_pred             CEEEEECCCcHHHHHHHHHHHH-CCCEEEEEecChHhhhhhccCCeEEEEecCCCHHHHHHHHcCCCEEEECCc
Confidence            4799999999999998887776 49999999987766544433344322 13322 123334568999999976

>3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis}

Probab=95.26  E-value=0.042  Score=49.80  Aligned_cols=73  Identities=27%  Similarity=0.261  Sum_probs=47.9

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHH----HhcCCcE-EE--eCCCCc-cccC-------CCC
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFL----KSLGADL-AI--DYTKDN-FEDL-------PEK  296 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~----~~~G~~~-vi--~~~~~~-~~~~-------~~~  296 (392)
                      .|.++||+||+|++|...+..+.. .|++|++++++.++.+.+    ++.|... .+  |..+.. +.+.       .+.
T Consensus        33 ~~k~vlITGasggIG~~la~~L~~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~  111 (279)
T 3ctm_A           33 KGKVASVTGSSGGIGWAVAEAYAQ-AGADVAIWYNSHPADEKAEHLQKTYGVHSKAYKCNISDPKSVEETISQQEKDFGT  111 (279)
T ss_dssp             TTCEEEETTTTSSHHHHHHHHHHH-HTCEEEEEESSSCCHHHHHHHHHHHCSCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHHHHhcCCcceEEEeecCCHHHHHHHHHHHHHHhCC
Confidence            478999999999999988776666 499999999877665443    2334332 22  322211 1111       135


Q ss_pred             ccEEEecCc
Q 016265          297 FDVVYDAIG  305 (392)
Q Consensus       297 ~D~vid~~G  305 (392)
                      +|++|++.|
T Consensus       112 id~li~~Ag  120 (279)
T 3ctm_A          112 IDVFVANAG  120 (279)
T ss_dssp             CSEEEECGG
T ss_pred             CCEEEECCc
Confidence            899999876

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=95.26  E-value=0.11  Score=47.78  Aligned_cols=85  Identities=15%  Similarity=0.130  Sum_probs=59.7

Q ss_pred             CeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCCccccCCCCccEEEecCcc---HHHH
Q 016265          234 KSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFEDLPEKFDVVYDAIGQ---CDRA  310 (392)
Q Consensus       234 ~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~~~~~~~D~vid~~G~---~~~~  310 (392)
                      .+|.|+| .|.+|...+..+.. .|.+|++.++++++.+.+.+.|.....+    +..+..+..|+||.|+..   .+..
T Consensus         8 ~~I~iIG-~G~mG~~~a~~l~~-~G~~V~~~dr~~~~~~~~~~~g~~~~~~----~~~e~~~~aDvvi~~vp~~~~~~~v   81 (303)
T 3g0o_A            8 FHVGIVG-LGSMGMGAARSCLR-AGLSTWGADLNPQACANLLAEGACGAAA----SAREFAGVVDALVILVVNAAQVRQV   81 (303)
T ss_dssp             CEEEEEC-CSHHHHHHHHHHHH-TTCEEEEECSCHHHHHHHHHTTCSEEES----SSTTTTTTCSEEEECCSSHHHHHHH
T ss_pred             CeEEEEC-CCHHHHHHHHHHHH-CCCeEEEEECCHHHHHHHHHcCCccccC----CHHHHHhcCCEEEEECCCHHHHHHH
Confidence            5799998 99999987777766 4999999999999999888888654221    223344567999988773   2333


Q ss_pred             H-------HhcccCCeEEEEc
Q 016265          311 V-------KAIKEGGTVVALT  324 (392)
Q Consensus       311 ~-------~~l~~~G~iv~~g  324 (392)
                      +       ..++++..++..+
T Consensus        82 ~~~~~~l~~~l~~g~ivv~~s  102 (303)
T 3g0o_A           82 LFGEDGVAHLMKPGSAVMVSS  102 (303)
T ss_dssp             HC--CCCGGGSCTTCEEEECS
T ss_pred             HhChhhHHhhCCCCCEEEecC
Confidence            3       3455666665554

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=95.25  E-value=0.046  Score=46.47  Aligned_cols=87  Identities=16%  Similarity=0.117  Sum_probs=55.9

Q ss_pred             CCCCCCeEEEEcCCCcHHHHHHHHHHHhcC----------CeEEEEeCCcccHHHHHhcCCcEEE-eCC--CCccc----
Q 016265          229 GFSAGKSILVLNGSGGVGSLVIQLAKQVFG----------ASRVAATSSTRNLEFLKSLGADLAI-DYT--KDNFE----  291 (392)
Q Consensus       229 ~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G----------~~vv~~~~~~~~~~~~~~~G~~~vi-~~~--~~~~~----  291 (392)
                      .+++|++||-+| +|+ |..+..+++.. |          .+++.++.++.+..    -++ ..+ ..+  .....    
T Consensus        19 ~~~~~~~vLDlG-cG~-G~~~~~la~~~-~~~~~~~~~~~~~v~~vD~s~~~~~----~~~-~~~~~~d~~~~~~~~~~~   90 (196)
T 2nyu_A           19 ILRPGLRVLDCG-AAP-GAWSQVAVQKV-NAAGTDPSSPVGFVLGVDLLHIFPL----EGA-TFLCPADVTDPRTSQRIL   90 (196)
T ss_dssp             CCCTTCEEEEET-CCS-CHHHHHHHHHT-TTTCCCTTSCCCEEEEECSSCCCCC----TTC-EEECSCCTTSHHHHHHHH
T ss_pred             CCCCCCEEEEeC-CCC-CHHHHHHHHHh-ccccccccCCCceEEEEechhcccC----CCC-eEEEeccCCCHHHHHHHH
Confidence            368899999998 777 99999999984 5          67888888764310    011 222 111  11111    


Q ss_pred             -cC-CCCccEEEe-----cCcc---------------HHHHHHhcccCCeEEEE
Q 016265          292 -DL-PEKFDVVYD-----AIGQ---------------CDRAVKAIKEGGTVVAL  323 (392)
Q Consensus       292 -~~-~~~~D~vid-----~~G~---------------~~~~~~~l~~~G~iv~~  323 (392)
                       .. .+.||+|+.     ++|.               +..+.++|+|||+++..
T Consensus        91 ~~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~  144 (196)
T 2nyu_A           91 EVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCK  144 (196)
T ss_dssp             HHSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             HhcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEE
Confidence             01 237999994     3331               34577899999999865

>2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A*

Probab=95.24  E-value=0.018  Score=52.23  Aligned_cols=90  Identities=16%  Similarity=0.192  Sum_probs=58.9

Q ss_pred             eEEEEcCCCcHHHHHHHHHHHhc--CCeEEEEeCCcccHHHHHhcCCcEE-EeCCC-CccccCCCCccEEEecCcc----
Q 016265          235 SILVLNGSGGVGSLVIQLAKQVF--GASRVAATSSTRNLEFLKSLGADLA-IDYTK-DNFEDLPEKFDVVYDAIGQ----  306 (392)
Q Consensus       235 ~VlI~Ga~G~vG~~aiqlak~~~--G~~vv~~~~~~~~~~~~~~~G~~~v-i~~~~-~~~~~~~~~~D~vid~~G~----  306 (392)
                      +|||+||+|.+|...++.+.. .  |.+|+++++++.+.+.+...+...+ .|..+ +.+.+..+++|+||.+.+.    
T Consensus         1 ~ilVtGatG~iG~~l~~~L~~-~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vi~~a~~~~~~   79 (286)
T 2zcu_A            1 MIAITGATGQLGHYVIESLMK-TVPASQIVAIVRNPAKAQALAAQGITVRQADYGDEAALTSALQGVEKLLLISSSEVGQ   79 (286)
T ss_dssp             CEEEESTTSHHHHHHHHHHTT-TSCGGGEEEEESCTTTCHHHHHTTCEEEECCTTCHHHHHHHTTTCSEEEECC------
T ss_pred             CEEEEcCCchHHHHHHHHHHh-hCCCceEEEEEcChHhhhhhhcCCCeEEEcCCCCHHHHHHHHhCCCEEEEeCCCCchH
Confidence            489999999999998877755 4  7889999988776655555554432 23333 2233445689999998762    


Q ss_pred             ----HHHHHHhccc-C-CeEEEEcC
Q 016265          307 ----CDRAVKAIKE-G-GTVVALTG  325 (392)
Q Consensus       307 ----~~~~~~~l~~-~-G~iv~~g~  325 (392)
                          ...+++.++. + +++|.++.
T Consensus        80 ~~~~~~~l~~a~~~~~~~~~v~~Ss  104 (286)
T 2zcu_A           80 RAPQHRNVINAAKAAGVKFIAYTSL  104 (286)
T ss_dssp             --CHHHHHHHHHHHHTCCEEEEEEE
T ss_pred             HHHHHHHHHHHHHHcCCCEEEEECC
Confidence                2344554443 3 57887754

>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa}

Probab=95.21  E-value=0.047  Score=50.02  Aligned_cols=88  Identities=26%  Similarity=0.359  Sum_probs=56.5

Q ss_pred             CCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCc-------ccHHHHH---hcCCcEE-EeCCCC-ccccCCCCccEE
Q 016265          233 GKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSST-------RNLEFLK---SLGADLA-IDYTKD-NFEDLPEKFDVV  300 (392)
Q Consensus       233 g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~-------~~~~~~~---~~G~~~v-i~~~~~-~~~~~~~~~D~v  300 (392)
                      +.+|+|+||+|.+|...+..+... |.+|++++++.       ++.+.++   ..|+..+ .|..+. .+.+..+++|+|
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~-g~~V~~~~R~~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~l~~~~~~~d~v   80 (307)
T 2gas_A            2 ENKILILGPTGAIGRHIVWASIKA-GNPTYALVRKTITAANPETKEELIDNYQSLGVILLEGDINDHETLVKAIKQVDIV   80 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHH-TCCEEEEECCSCCSSCHHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEE
T ss_pred             CcEEEEECCCchHHHHHHHHHHhC-CCcEEEEECCCcccCChHHHHHHHHHHHhCCCEEEEeCCCCHHHHHHHHhCCCEE
Confidence            467999999999999988877664 89999998875       4444332   3455432 233332 233334589999


Q ss_pred             EecCcc-----HHHHHHhcccC---CeEE
Q 016265          301 YDAIGQ-----CDRAVKAIKEG---GTVV  321 (392)
Q Consensus       301 id~~G~-----~~~~~~~l~~~---G~iv  321 (392)
                      |.+.|.     ...++++++..   .+++
T Consensus        81 i~~a~~~~~~~~~~l~~aa~~~g~v~~~v  109 (307)
T 2gas_A           81 ICAAGRLLIEDQVKIIKAIKEAGNVKKFF  109 (307)
T ss_dssp             EECSSSSCGGGHHHHHHHHHHHCCCSEEE
T ss_pred             EECCcccccccHHHHHHHHHhcCCceEEe
Confidence            999872     24455555433   4665

>2qhx_A Pteridine reductase 1; oxidoreductase, short-chain dehydrogenase/reductase, trypanosomatid, pterin salvage, drug resistance; HET: NAP FE1; 2.61A {Leishmania major} SCOP: c.2.1.2

Probab=95.15  E-value=0.044  Score=51.27  Aligned_cols=42  Identities=14%  Similarity=0.048  Sum_probs=34.8

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEe-CCcccHHHH
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAAT-SSTRNLEFL  274 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~-~~~~~~~~~  274 (392)
                      .|.++||+||+|++|.+.++.+.. .|++|++++ +++++++.+
T Consensus        45 ~~k~~lVTGas~GIG~aia~~La~-~G~~Vv~~~~r~~~~~~~~   87 (328)
T 2qhx_A           45 TVPVALVTGAAKRLGRSIAEGLHA-EGYAVCLHYHRSAAEANAL   87 (328)
T ss_dssp             CCCEEEETTCSSHHHHHHHHHHHH-TTCEEEEEESSCHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHH-CCCEEEEEcCCCHHHHHHH
Confidence            478999999999999998887766 499999998 887766544

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}

Probab=95.15  E-value=0.075  Score=45.74  Aligned_cols=95  Identities=23%  Similarity=0.187  Sum_probs=63.5

Q ss_pred             HhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhc----CCc---EEEeCCCCccccCCCCcc
Q 016265          226 ERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSL----GAD---LAIDYTKDNFEDLPEKFD  298 (392)
Q Consensus       226 ~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~----G~~---~vi~~~~~~~~~~~~~~D  298 (392)
                      .....+++ +||-+| +| .|..+..+++. .+.+++.++.++..++.+++.    |..   .++..+-.......+.+|
T Consensus        38 ~~~~~~~~-~vLdiG-~G-~G~~~~~l~~~-~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D  113 (219)
T 3dlc_A           38 NRFGITAG-TCIDIG-SG-PGALSIALAKQ-SDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIPIEDNYAD  113 (219)
T ss_dssp             HHHCCCEE-EEEEET-CT-TSHHHHHHHHH-SEEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBCSSCTTCEE
T ss_pred             HhcCCCCC-EEEEEC-CC-CCHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHCCCCccccc
Confidence            45566666 899987 44 48888999987 588999999998887777543    422   122222112111235799


Q ss_pred             EEEecCc---------cHHHHHHhcccCCeEEEEc
Q 016265          299 VVYDAIG---------QCDRAVKAIKEGGTVVALT  324 (392)
Q Consensus       299 ~vid~~G---------~~~~~~~~l~~~G~iv~~g  324 (392)
                      +|+..-.         .+..+.+.|+|||+++...
T Consensus       114 ~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~  148 (219)
T 3dlc_A          114 LIVSRGSVFFWEDVATAFREIYRILKSGGKTYIGG  148 (219)
T ss_dssp             EEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEEECchHhhccCHHHHHHHHHHhCCCCCEEEEEe
Confidence            9996532         2478888999999988754

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=95.14  E-value=0.015  Score=51.53  Aligned_cols=92  Identities=17%  Similarity=0.199  Sum_probs=61.4

Q ss_pred             CCCCCeEEEEcCCCcHHHHHHHHHHHhc-CCeEEEEeCCcccHHHHHh----cCCcE---EEeCCCCc-cccC---C--C
Q 016265          230 FSAGKSILVLNGSGGVGSLVIQLAKQVF-GASRVAATSSTRNLEFLKS----LGADL---AIDYTKDN-FEDL---P--E  295 (392)
Q Consensus       230 ~~~g~~VlI~Ga~G~vG~~aiqlak~~~-G~~vv~~~~~~~~~~~~~~----~G~~~---vi~~~~~~-~~~~---~--~  295 (392)
                      ..++++||-+| +| .|..++.+++.+. +.+++.++.+++..+.+++    .|...   ++..+... ..+.   .  +
T Consensus        70 ~~~~~~vLdiG-~G-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~  147 (232)
T 3cbg_A           70 LTGAKQVLEIG-VF-RGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLP  147 (232)
T ss_dssp             HHTCCEEEEEC-CT-TSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCC
T ss_pred             hcCCCEEEEec-CC-CCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCC
Confidence            34678999998 55 7999999998742 4688899999888777754    35432   12211111 1111   1  5


Q ss_pred             CccEEEe-cCc-----cHHHHHHhcccCCeEEEE
Q 016265          296 KFDVVYD-AIG-----QCDRAVKAIKEGGTVVAL  323 (392)
Q Consensus       296 ~~D~vid-~~G-----~~~~~~~~l~~~G~iv~~  323 (392)
                      .||+||- +..     .++.+.++|++||.++.-
T Consensus       148 ~fD~V~~d~~~~~~~~~l~~~~~~LkpgG~lv~~  181 (232)
T 3cbg_A          148 EFDLIFIDADKRNYPRYYEIGLNLLRRGGLMVID  181 (232)
T ss_dssp             CEEEEEECSCGGGHHHHHHHHHHTEEEEEEEEEE
T ss_pred             CcCEEEECCCHHHHHHHHHHHHHHcCCCeEEEEe
Confidence            7999984 332     257888999999999875

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=95.12  E-value=0.081  Score=46.47  Aligned_cols=95  Identities=12%  Similarity=0.244  Sum_probs=63.4

Q ss_pred             hcCCCCCCeEEEEcCCCcHHHHHHHHHHHhc-CCeEEEEeCCcccHHHHHh----cCCc-EEEeCCCC---cc-ccC-CC
Q 016265          227 RTGFSAGKSILVLNGSGGVGSLVIQLAKQVF-GASRVAATSSTRNLEFLKS----LGAD-LAIDYTKD---NF-EDL-PE  295 (392)
Q Consensus       227 ~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~-G~~vv~~~~~~~~~~~~~~----~G~~-~vi~~~~~---~~-~~~-~~  295 (392)
                      ..+.+++.+||=+|  .+.|..++.+|+.+. +++++.++.+++..+.+++    .|.. .-+.....   ++ ... .+
T Consensus        51 ~~~~~~~~~vLdiG--~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~~~~  128 (221)
T 3dr5_A           51 TTNGNGSTGAIAIT--PAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRLAND  128 (221)
T ss_dssp             HSCCTTCCEEEEES--TTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGSCTT
T ss_pred             hhCCCCCCCEEEEc--CCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHHhcCC
Confidence            34455667999887  456999999998742 5788999999888777643    4543 11221111   11 223 46


Q ss_pred             CccEEEecCc------cHHHHHHhcccCCeEEEE
Q 016265          296 KFDVVYDAIG------QCDRAVKAIKEGGTVVAL  323 (392)
Q Consensus       296 ~~D~vid~~G------~~~~~~~~l~~~G~iv~~  323 (392)
                      .||+||-...      .++.+.+.|+|||.++.-
T Consensus       129 ~fD~V~~d~~~~~~~~~l~~~~~~LkpGG~lv~d  162 (221)
T 3dr5_A          129 SYQLVFGQVSPMDLKALVDAAWPLLRRGGALVLA  162 (221)
T ss_dssp             CEEEEEECCCTTTHHHHHHHHHHHEEEEEEEEET
T ss_pred             CcCeEEEcCcHHHHHHHHHHHHHHcCCCcEEEEe
Confidence            7999985433      257888999999999864

>3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase, oxidoreductase, structural genomics; HET: P4C; 2.25A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=95.11  E-value=0.05  Score=48.61  Aligned_cols=75  Identities=23%  Similarity=0.261  Sum_probs=46.1

Q ss_pred             CCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEe-CCcccHH----HHHhcCCcE-EE--eCCCCc-ccc-------C
Q 016265          230 FSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAAT-SSTRNLE----FLKSLGADL-AI--DYTKDN-FED-------L  293 (392)
Q Consensus       230 ~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~-~~~~~~~----~~~~~G~~~-vi--~~~~~~-~~~-------~  293 (392)
                      ..++++|||+||+|++|...+..... .|++|++++ ++.++.+    .+++.+... .+  |..+.+ +.+       .
T Consensus        10 ~~~~k~vlITGas~giG~~ia~~l~~-~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   88 (256)
T 3ezl_A           10 VMSQRIAYVTGGMGGIGTSICQRLHK-DGFRVVAGCGPNSPRRVKWLEDQKALGFDFYASEGNVGDWDSTKQAFDKVKAE   88 (256)
T ss_dssp             ---CEEEEETTTTSHHHHHHHHHHHH-TTEEEEEEECTTCSSHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCChHHHHHHHHHHH-CCCEEEEEeCCCHHHHHHHHHHHHhcCCeeEEEecCCCCHHHHHHHHHHHHHh
Confidence            35688999999999999987776666 499998887 4444433    233445332 22  222211 111       1


Q ss_pred             CCCccEEEecCc
Q 016265          294 PEKFDVVYDAIG  305 (392)
Q Consensus       294 ~~~~D~vid~~G  305 (392)
                      .+++|++|++.|
T Consensus        89 ~g~id~lv~~Ag  100 (256)
T 3ezl_A           89 VGEIDVLVNNAG  100 (256)
T ss_dssp             TCCEEEEEECCC
T ss_pred             cCCCCEEEECCC
Confidence            347899999877

>3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 1.85A {Mycobacterium ulcerans}

Probab=95.11  E-value=0.055  Score=48.48  Aligned_cols=71  Identities=18%  Similarity=0.253  Sum_probs=45.4

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcE-EE--eCCCCc-cccC------CCCccEEE
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADL-AI--DYTKDN-FEDL------PEKFDVVY  301 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~-vi--~~~~~~-~~~~------~~~~D~vi  301 (392)
                      .|+++||+||+|++|.+.++.... .|++|+++++..+  +..++++... .+  |..+.. +.+.      .+++|++|
T Consensus         8 ~~k~vlVTGas~gIG~aia~~l~~-~G~~V~~~~r~~~--~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~g~id~lv   84 (257)
T 3tl3_A            8 RDAVAVVTGGASGLGLATTKRLLD-AGAQVVVLDIRGE--DVVADLGDRARFAAADVTDEAAVASALDLAETMGTLRIVV   84 (257)
T ss_dssp             --CEEEEETTTSHHHHHHHHHHHH-HTCEEEEEESSCH--HHHHHTCTTEEEEECCTTCHHHHHHHHHHHHHHSCEEEEE
T ss_pred             cCCEEEEeCCCCHHHHHHHHHHHH-CCCEEEEEeCchH--HHHHhcCCceEEEECCCCCHHHHHHHHHHHHHhCCCCEEE
Confidence            468999999999999987776655 3999999987443  3344555432 22  322211 1111      24799999


Q ss_pred             ecCc
Q 016265          302 DAIG  305 (392)
Q Consensus       302 d~~G  305 (392)
                      ++.|
T Consensus        85 ~nAg   88 (257)
T 3tl3_A           85 NCAG   88 (257)
T ss_dssp             ECGG
T ss_pred             ECCC
Confidence            9987

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=95.08  E-value=0.099  Score=45.68  Aligned_cols=95  Identities=23%  Similarity=0.243  Sum_probs=62.3

Q ss_pred             HhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcC--CeEEEEeCCcccHHHHHh----cCCcEEEeCCCCcc---ccCCCC
Q 016265          226 ERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFG--ASRVAATSSTRNLEFLKS----LGADLAIDYTKDNF---EDLPEK  296 (392)
Q Consensus       226 ~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G--~~vv~~~~~~~~~~~~~~----~G~~~vi~~~~~~~---~~~~~~  296 (392)
                      ....++++++||-+| +|. |..+..+++.. |  .+++.++.+++..+.+++    ..--.++..+-...   ....+.
T Consensus        67 ~~~~~~~~~~vLDlG-~G~-G~~~~~la~~~-~~~~~v~~vD~s~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~  143 (227)
T 1g8a_A           67 KNFPIKPGKSVLYLG-IAS-GTTASHVSDIV-GWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPK  143 (227)
T ss_dssp             CCCCCCTTCEEEEET-TTS-TTHHHHHHHHH-CTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCC
T ss_pred             HhcCCCCCCEEEEEe-ccC-CHHHHHHHHHh-CCCeEEEEEECCHHHHHHHHHHHhccCCCEEEEccCCCcchhhcccCC
Confidence            344578999999998 555 88999999874 4  688888888865555432    21112222222221   122357


Q ss_pred             ccEEEecCc------c-HHHHHHhcccCCeEEEE
Q 016265          297 FDVVYDAIG------Q-CDRAVKAIKEGGTVVAL  323 (392)
Q Consensus       297 ~D~vid~~G------~-~~~~~~~l~~~G~iv~~  323 (392)
                      +|+|+-...      . +..+.+.|+|||+++..
T Consensus       144 ~D~v~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  177 (227)
T 1g8a_A          144 VDVIFEDVAQPTQAKILIDNAEVYLKRGGYGMIA  177 (227)
T ss_dssp             EEEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ceEEEECCCCHhHHHHHHHHHHHhcCCCCEEEEE
Confidence            999996543      1 46788899999998876

>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii}

Probab=95.08  E-value=0.026  Score=53.14  Aligned_cols=83  Identities=23%  Similarity=0.305  Sum_probs=57.0

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCCccccCCCCccEEEecCcc-----
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFEDLPEKFDVVYDAIGQ-----  306 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~~~~~~~D~vid~~G~-----  306 (392)
                      .|.+|.|+| .|.+|...++.++. +|.+|++.+++.++ +.+.++|+..    .  ++.+.....|+|+.++..     
T Consensus       145 ~g~~vgIIG-~G~iG~~vA~~l~~-~G~~V~~~d~~~~~-~~~~~~g~~~----~--~l~e~l~~aDiVil~vp~~~~t~  215 (333)
T 2d0i_A          145 YGKKVGILG-MGAIGKAIARRLIP-FGVKLYYWSRHRKV-NVEKELKARY----M--DIDELLEKSDIVILALPLTRDTY  215 (333)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHGG-GTCEEEEECSSCCH-HHHHHHTEEE----C--CHHHHHHHCSEEEECCCCCTTTT
T ss_pred             CcCEEEEEc-cCHHHHHHHHHHHH-CCCEEEEECCCcch-hhhhhcCcee----c--CHHHHHhhCCEEEEcCCCChHHH
Confidence            578999998 99999999999987 59999998887765 5555666421    1  222333456888877651     


Q ss_pred             --H-HHHHHhcccCCeEEEEc
Q 016265          307 --C-DRAVKAIKEGGTVVALT  324 (392)
Q Consensus       307 --~-~~~~~~l~~~G~iv~~g  324 (392)
                        + ...++.++++ .++.++
T Consensus       216 ~~i~~~~~~~mk~g-ilin~s  235 (333)
T 2d0i_A          216 HIINEERVKKLEGK-YLVNIG  235 (333)
T ss_dssp             TSBCHHHHHHTBTC-EEEECS
T ss_pred             HHhCHHHHhhCCCC-EEEECC
Confidence              1 3456677777 665543

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3

Probab=95.07  E-value=0.15  Score=44.25  Aligned_cols=94  Identities=22%  Similarity=0.298  Sum_probs=58.8

Q ss_pred             cCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHH----HHHhcCCcEEEeCCCCcc---ccCCCCccEE
Q 016265          228 TGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLE----FLKSLGADLAIDYTKDNF---EDLPEKFDVV  300 (392)
Q Consensus       228 ~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~----~~~~~G~~~vi~~~~~~~---~~~~~~~D~v  300 (392)
                      ..+++|++||=+| +| .|..+..+++...+.+|+.++.++..++    .+++..--..+..+....   ....+.||+|
T Consensus        53 ~~~~~g~~VLDlG-cG-tG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~fD~V  130 (210)
T 1nt2_A           53 LKLRGDERVLYLG-AA-SGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIVEKVDLI  130 (210)
T ss_dssp             CCCCSSCEEEEET-CT-TSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTCCCEEEE
T ss_pred             cCCCCCCEEEEEC-Cc-CCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcCCCeEEEEcCCCCchhhcccccceeEE
Confidence            4678999999997 44 4778888888732357888898886433    333332111121111111   1123579999


Q ss_pred             EecCc-c------HHHHHHhcccCCeEEEE
Q 016265          301 YDAIG-Q------CDRAVKAIKEGGTVVAL  323 (392)
Q Consensus       301 id~~G-~------~~~~~~~l~~~G~iv~~  323 (392)
                      +-... .      +..+.+.|+|||+++..
T Consensus       131 ~~~~~~~~~~~~~l~~~~r~LkpgG~l~i~  160 (210)
T 1nt2_A          131 YQDIAQKNQIEILKANAEFFLKEKGEVVIM  160 (210)
T ss_dssp             EECCCSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             EEeccChhHHHHHHHHHHHHhCCCCEEEEE
Confidence            87643 1      36778899999999866

>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}

Probab=95.06  E-value=0.096  Score=48.10  Aligned_cols=95  Identities=31%  Similarity=0.311  Sum_probs=62.1

Q ss_pred             cchhHHHHHHHHHhcCC-CCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCCcccc
Q 016265          214 LPLAIETAYEGLERTGF-SAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFED  292 (392)
Q Consensus       214 l~~~~~ta~~al~~~~~-~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~~  292 (392)
                      +||....+...|+.... -.|.+|+|+|.++.+|..+++++... |+.|.++.+....+++                 .+
T Consensus       145 ~PcTp~gv~~lL~~~~i~l~Gk~vvVIG~s~iVG~p~A~lL~~~-gAtVtv~~~~T~~l~l-----------------~~  206 (300)
T 4a26_A          145 TPCTAKGVIVLLKRCGIEMAGKRAVVLGRSNIVGAPVAALLMKE-NATVTIVHSGTSTEDM-----------------ID  206 (300)
T ss_dssp             CCHHHHHHHHHHHHHTCCCTTCEEEEECCCTTTHHHHHHHHHHT-TCEEEEECTTSCHHHH-----------------HH
T ss_pred             CCCCHHHHHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHHHC-CCeEEEEeCCCCCchh-----------------hh
Confidence            45555555556665443 47999999996666999999999884 9988887764443331                 01


Q ss_pred             CCCCccEEEecCccHH-HHHHhcccCCeEEEEcCC
Q 016265          293 LPEKFDVVYDAIGQCD-RAVKAIKEGGTVVALTGA  326 (392)
Q Consensus       293 ~~~~~D~vid~~G~~~-~~~~~l~~~G~iv~~g~~  326 (392)
                      ..+.+|+||.++|... ---+.+++|..++.++..
T Consensus       207 ~~~~ADIVI~Avg~p~~I~~~~vk~GavVIDvgi~  241 (300)
T 4a26_A          207 YLRTADIVIAAMGQPGYVKGEWIKEGAAVVDVGTT  241 (300)
T ss_dssp             HHHTCSEEEECSCCTTCBCGGGSCTTCEEEECCCE
T ss_pred             hhccCCEEEECCCCCCCCcHHhcCCCcEEEEEecc
Confidence            2235688888887321 111347888888888753

>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli}

Probab=95.03  E-value=0.04  Score=49.85  Aligned_cols=75  Identities=23%  Similarity=0.327  Sum_probs=47.3

Q ss_pred             CCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEE-eCCcccHHHH----HhcCCcE-EE--eCCCCc-cccC-------
Q 016265          230 FSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAA-TSSTRNLEFL----KSLGADL-AI--DYTKDN-FEDL-------  293 (392)
Q Consensus       230 ~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~-~~~~~~~~~~----~~~G~~~-vi--~~~~~~-~~~~-------  293 (392)
                      ...+.+|||+||+|++|.+.++.+.. .|++|+++ .++.++.+.+    ++.+... ++  |..+.. +.+.       
T Consensus        23 m~~~k~vlITGas~gIG~a~a~~l~~-~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~  101 (272)
T 4e3z_A           23 MSDTPVVLVTGGSRGIGAAVCRLAAR-QGWRVGVNYAANREAADAVVAAITESGGEAVAIPGDVGNAADIAAMFSAVDRQ  101 (272)
T ss_dssp             -CCSCEEEETTTTSHHHHHHHHHHHH-TTCEEEEEESSCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             ccCCCEEEEECCCchHHHHHHHHHHH-CCCEEEEEcCCChhHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHh
Confidence            34678999999999999998877666 49999877 4565554433    3334332 22  222211 1111       


Q ss_pred             CCCccEEEecCc
Q 016265          294 PEKFDVVYDAIG  305 (392)
Q Consensus       294 ~~~~D~vid~~G  305 (392)
                      .+++|++|.+.|
T Consensus       102 ~g~id~li~nAg  113 (272)
T 4e3z_A          102 FGRLDGLVNNAG  113 (272)
T ss_dssp             HSCCCEEEECCC
T ss_pred             CCCCCEEEECCC
Confidence            237899999876

>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*

Probab=95.02  E-value=0.055  Score=50.73  Aligned_cols=85  Identities=18%  Similarity=0.259  Sum_probs=55.0

Q ss_pred             CCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCc----ccHHHH---HhcCCcEEE-eCCC-CccccCCC--CccEEE
Q 016265          233 GKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSST----RNLEFL---KSLGADLAI-DYTK-DNFEDLPE--KFDVVY  301 (392)
Q Consensus       233 g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~----~~~~~~---~~~G~~~vi-~~~~-~~~~~~~~--~~D~vi  301 (392)
                      ..+|||+||+|.+|...+..+.. .|.+|++++++.    ++.+.+   +..|+..+. |..+ +.+.+.-+  ++|+||
T Consensus        10 ~~~IlVtGatG~iG~~l~~~L~~-~g~~V~~l~R~~~~~~~~~~~~~~l~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~Vi   88 (346)
T 3i6i_A           10 KGRVLIAGATGFIGQFVATASLD-AHRPTYILARPGPRSPSKAKIFKALEDKGAIIVYGLINEQEAMEKILKEHEIDIVV   88 (346)
T ss_dssp             -CCEEEECTTSHHHHHHHHHHHH-TTCCEEEEECSSCCCHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHHHTTCCEEE
T ss_pred             CCeEEEECCCcHHHHHHHHHHHH-CCCCEEEEECCCCCChhHHHHHHHHHhCCcEEEEeecCCHHHHHHHHhhCCCCEEE
Confidence            35899999999999998888777 489999998865    444433   334554322 3322 12223334  899999


Q ss_pred             ecCcc-----HHHHHHhcccCC
Q 016265          302 DAIGQ-----CDRAVKAIKEGG  318 (392)
Q Consensus       302 d~~G~-----~~~~~~~l~~~G  318 (392)
                      .+.+.     ...++++++..|
T Consensus        89 ~~a~~~n~~~~~~l~~aa~~~g  110 (346)
T 3i6i_A           89 STVGGESILDQIALVKAMKAVG  110 (346)
T ss_dssp             ECCCGGGGGGHHHHHHHHHHHC
T ss_pred             ECCchhhHHHHHHHHHHHHHcC
Confidence            99872     345556655544

>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A*

Probab=95.02  E-value=0.036  Score=52.08  Aligned_cols=84  Identities=19%  Similarity=0.326  Sum_probs=61.0

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCCccccCCCCccEEEecCcc-----
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFEDLPEKFDVVYDAIGQ-----  306 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~~~~~~~D~vid~~G~-----  306 (392)
                      .|.+|.|+| .|.+|...++.++. +|++|++.+++.++.  +++. +..    . .+..+..+..|+|+.++..     
T Consensus       145 ~g~~vgIiG-~G~IG~~~A~~l~~-~G~~V~~~d~~~~~~--~~~~-~~~----~-~~l~ell~~aDvV~l~~p~~~~t~  214 (333)
T 1j4a_A          145 RDQVVGVVG-TGHIGQVFMQIMEG-FGAKVITYDIFRNPE--LEKK-GYY----V-DSLDDLYKQADVISLHVPDVPANV  214 (333)
T ss_dssp             GGSEEEEEC-CSHHHHHHHHHHHH-TTCEEEEECSSCCHH--HHHT-TCB----C-SCHHHHHHHCSEEEECSCCCGGGT
T ss_pred             CCCEEEEEc-cCHHHHHHHHHHHH-CCCEEEEECCCcchh--HHhh-Cee----c-CCHHHHHhhCCEEEEcCCCcHHHH
Confidence            478999998 99999999999998 699999988876654  2332 221    1 1233444467999998761     


Q ss_pred             --H-HHHHHhcccCCeEEEEcC
Q 016265          307 --C-DRAVKAIKEGGTVVALTG  325 (392)
Q Consensus       307 --~-~~~~~~l~~~G~iv~~g~  325 (392)
                        + ...++.+++++.++.++.
T Consensus       215 ~li~~~~l~~mk~ga~lIn~ar  236 (333)
T 1j4a_A          215 HMINDESIAKMKQDVVIVNVSR  236 (333)
T ss_dssp             TCBSHHHHHHSCTTEEEEECSC
T ss_pred             HHHhHHHHhhCCCCcEEEECCC
Confidence              2 467788999988887754

>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A*

Probab=95.02  E-value=0.025  Score=53.55  Aligned_cols=86  Identities=24%  Similarity=0.304  Sum_probs=60.3

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCCccccCCCCccEEEecCcc-----
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFEDLPEKFDVVYDAIGQ-----  306 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~~~~~~~D~vid~~G~-----  306 (392)
                      .|.+|.|+| .|.+|...++.++. +|.+|++.+++..+ +..+++|+..+     .++.+..+..|+|+-++..     
T Consensus       167 ~g~tvGIIG-~G~IG~~vA~~l~~-~G~~V~~~d~~~~~-~~~~~~g~~~~-----~~l~ell~~aDvV~l~~P~t~~t~  238 (347)
T 1mx3_A          167 RGETLGIIG-LGRVGQAVALRAKA-FGFNVLFYDPYLSD-GVERALGLQRV-----STLQDLLFHSDCVTLHCGLNEHNH  238 (347)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHT-TTCEEEEECTTSCT-THHHHHTCEEC-----SSHHHHHHHCSEEEECCCCCTTCT
T ss_pred             CCCEEEEEe-ECHHHHHHHHHHHH-CCCEEEEECCCcch-hhHhhcCCeec-----CCHHHHHhcCCEEEEcCCCCHHHH
Confidence            578999998 99999999999998 69999988876544 23455675321     1233333467888877641     


Q ss_pred             --H-HHHHHhcccCCeEEEEcC
Q 016265          307 --C-DRAVKAIKEGGTVVALTG  325 (392)
Q Consensus       307 --~-~~~~~~l~~~G~iv~~g~  325 (392)
                        + ...++.|+++..++.++.
T Consensus       239 ~li~~~~l~~mk~gailIN~ar  260 (347)
T 1mx3_A          239 HLINDFTVKQMRQGAFLVNTAR  260 (347)
T ss_dssp             TSBSHHHHTTSCTTEEEEECSC
T ss_pred             HHhHHHHHhcCCCCCEEEECCC
Confidence              2 567778888887777654

>1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP: c.2.1.2

Probab=95.02  E-value=0.073  Score=47.58  Aligned_cols=73  Identities=18%  Similarity=0.242  Sum_probs=46.8

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHH-HHH----hcCCcE-EE--eCCCCc-ccc-------CCC
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLE-FLK----SLGADL-AI--DYTKDN-FED-------LPE  295 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~-~~~----~~G~~~-vi--~~~~~~-~~~-------~~~  295 (392)
                      .+.+|||+||+|++|...+..+.. .|++|++++++.++.+ .++    +.+... .+  |..+.. +.+       ..+
T Consensus        13 ~~k~vlITGasggiG~~~a~~l~~-~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~   91 (265)
T 1h5q_A           13 VNKTIIVTGGNRGIGLAFTRAVAA-AGANVAVIYRSAADAVEVTEKVGKEFGVKTKAYQCDVSNTDIVTKTIQQIDADLG   91 (265)
T ss_dssp             TTEEEEEETTTSHHHHHHHHHHHH-TTEEEEEEESSCTTHHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEECCCchHHHHHHHHHHH-CCCeEEEEeCcchhhHHHHHHHHHhcCCeeEEEEeeCCCHHHHHHHHHHHHHhcC
Confidence            467899999999999998877666 4999999988555432 222    234332 22  333221 111       124


Q ss_pred             CccEEEecCc
Q 016265          296 KFDVVYDAIG  305 (392)
Q Consensus       296 ~~D~vid~~G  305 (392)
                      ++|++|.+.|
T Consensus        92 ~id~li~~Ag  101 (265)
T 1h5q_A           92 PISGLIANAG  101 (265)
T ss_dssp             SEEEEEECCC
T ss_pred             CCCEEEECCC
Confidence            6999999876

>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri}

Probab=95.01  E-value=0.069  Score=49.32  Aligned_cols=88  Identities=15%  Similarity=0.311  Sum_probs=56.8

Q ss_pred             CCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCc------ccHHHH---HhcCCcEE-EeCCCC-ccccCCCCccEEE
Q 016265          233 GKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSST------RNLEFL---KSLGADLA-IDYTKD-NFEDLPEKFDVVY  301 (392)
Q Consensus       233 g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~------~~~~~~---~~~G~~~v-i~~~~~-~~~~~~~~~D~vi  301 (392)
                      ..+|+|+||+|.+|...+..+.. .|.+|++++++.      ++.+.+   ...|+..+ .|..+. .+.+..+++|+||
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~-~g~~V~~~~R~~~~~~~~~~~~~l~~~~~~~v~~v~~D~~d~~~l~~a~~~~d~vi   82 (321)
T 3c1o_A            4 MEKIIIYGGTGYIGKFMVRASLS-FSHPTFIYARPLTPDSTPSSVQLREEFRSMGVTIIEGEMEEHEKMVSVLKQVDIVI   82 (321)
T ss_dssp             CCCEEEETTTSTTHHHHHHHHHH-TTCCEEEEECCCCTTCCHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEE
T ss_pred             ccEEEEEcCCchhHHHHHHHHHh-CCCcEEEEECCcccccChHHHHHHHHhhcCCcEEEEecCCCHHHHHHHHcCCCEEE
Confidence            35799999999999998887776 499999998875      333333   23454432 233332 2333446799999


Q ss_pred             ecCcc-----HHHHHHhcccC---CeEE
Q 016265          302 DAIGQ-----CDRAVKAIKEG---GTVV  321 (392)
Q Consensus       302 d~~G~-----~~~~~~~l~~~---G~iv  321 (392)
                      .+.+.     ...+++.++..   ++||
T Consensus        83 ~~a~~~~~~~~~~l~~aa~~~g~v~~~v  110 (321)
T 3c1o_A           83 SALPFPMISSQIHIINAIKAAGNIKRFL  110 (321)
T ss_dssp             ECCCGGGSGGGHHHHHHHHHHCCCCEEE
T ss_pred             ECCCccchhhHHHHHHHHHHhCCccEEe
Confidence            99872     24555555443   4666

>1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5

Probab=94.99  E-value=0.072  Score=48.50  Aligned_cols=93  Identities=13%  Similarity=0.164  Sum_probs=59.8

Q ss_pred             HHHhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCC-eEEEEeCCcccHH-HHHhcCCcEEEeCCCCccccCCCCccEEE
Q 016265          224 GLERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGA-SRVAATSSTRNLE-FLKSLGADLAIDYTKDNFEDLPEKFDVVY  301 (392)
Q Consensus       224 al~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~-~vv~~~~~~~~~~-~~~~~G~~~vi~~~~~~~~~~~~~~D~vi  301 (392)
                      +|.......+.+|+|+| +|++|.+++..+... |+ +++++.++.+|.+ ++++++.+  ++.   ...  ...+|+||
T Consensus       110 ~l~~~~~~~~~~vlvlG-aGgaarav~~~L~~~-G~~~i~v~nRt~~ka~~la~~~~~~--~~~---~~~--~~~~DivI  180 (271)
T 1npy_A          110 LIEKYHLNKNAKVIVHG-SGGMAKAVVAAFKNS-GFEKLKIYARNVKTGQYLAALYGYA--YIN---SLE--NQQADILV  180 (271)
T ss_dssp             HHHHTTCCTTSCEEEEC-SSTTHHHHHHHHHHT-TCCCEEEECSCHHHHHHHHHHHTCE--EES---CCT--TCCCSEEE
T ss_pred             HHHHhCCCCCCEEEEEC-CcHHHHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHcCCc--cch---hhh--cccCCEEE
Confidence            34444445678999998 899999988777774 87 6778888877754 44566652  111   111  24789999


Q ss_pred             ecCcc-H--H-------HHHHhcccCCeEEEEcC
Q 016265          302 DAIGQ-C--D-------RAVKAIKEGGTVVALTG  325 (392)
Q Consensus       302 d~~G~-~--~-------~~~~~l~~~G~iv~~g~  325 (392)
                      +|+.. +  .       .....+.++..++++..
T Consensus       181 naTp~gm~~~~~~~~~~~~~~~l~~~~~v~DlvY  214 (271)
T 1npy_A          181 NVTSIGMKGGKEEMDLAFPKAFIDNASVAFDVVA  214 (271)
T ss_dssp             ECSSTTCTTSTTTTSCSSCHHHHHHCSEEEECCC
T ss_pred             ECCCCCccCccccCCCCCCHHHcCCCCEEEEeec
Confidence            99762 1  1       11345666776776653

>1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus} SCOP: c.2.1.2 PDB: 2cdh_G

Probab=94.97  E-value=0.056  Score=47.74  Aligned_cols=72  Identities=21%  Similarity=0.348  Sum_probs=46.4

Q ss_pred             CCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEE-eCCcccHHHH----HhcCCcE-EE--eCCCC-ccccC-------CCC
Q 016265          233 GKSILVLNGSGGVGSLVIQLAKQVFGASRVAA-TSSTRNLEFL----KSLGADL-AI--DYTKD-NFEDL-------PEK  296 (392)
Q Consensus       233 g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~-~~~~~~~~~~----~~~G~~~-vi--~~~~~-~~~~~-------~~~  296 (392)
                      |.+|+|+||+|++|...++.+.. .|++|+++ .+++++.+.+    ++.|... .+  |..+. .+.+.       -++
T Consensus         1 ~k~vlVTGasggiG~~la~~l~~-~G~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~   79 (244)
T 1edo_A            1 SPVVVVTGASRGIGKAIALSLGK-AGCKVLVNYARSAKAAEEVSKQIEAYGGQAITFGGDVSKEADVEAMMKTAIDAWGT   79 (244)
T ss_dssp             CCEEEETTCSSHHHHHHHHHHHH-TTCEEEEEESSCHHHHHHHHHHHHHHTCEEEEEECCTTSHHHHHHHHHHHHHHSSC
T ss_pred             CCEEEEeCCCchHHHHHHHHHHH-CCCEEEEEcCCCHHHHHHHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHHHHHHcCC
Confidence            56899999999999998887766 49999885 6676655433    2334322 22  32221 11111       237


Q ss_pred             ccEEEecCc
Q 016265          297 FDVVYDAIG  305 (392)
Q Consensus       297 ~D~vid~~G  305 (392)
                      +|++|++.|
T Consensus        80 id~li~~Ag   88 (244)
T 1edo_A           80 IDVVVNNAG   88 (244)
T ss_dssp             CSEEEECCC
T ss_pred             CCEEEECCC
Confidence            899999876

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}

Probab=94.96  E-value=0.1  Score=46.34  Aligned_cols=93  Identities=20%  Similarity=0.211  Sum_probs=62.8

Q ss_pred             hcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCC-eEEEEeCCcccHHHHHhcCC--c-EEEeCCCCccccCCCCccEEEe
Q 016265          227 RTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGA-SRVAATSSTRNLEFLKSLGA--D-LAIDYTKDNFEDLPEKFDVVYD  302 (392)
Q Consensus       227 ~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~-~vv~~~~~~~~~~~~~~~G~--~-~vi~~~~~~~~~~~~~~D~vid  302 (392)
                      .....++.+||=+| +|. |..+..+++.  |. +++.++.++.-++.+++...  . .++..+-..+....+.+|+|+.
T Consensus        39 ~~~~~~~~~vLD~G-cG~-G~~~~~l~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~  114 (253)
T 3g5l_A           39 MLPDFNQKTVLDLG-CGF-GWHCIYAAEH--GAKKVLGIDLSERMLTEAKRKTTSPVVCYEQKAIEDIAIEPDAYNVVLS  114 (253)
T ss_dssp             TCCCCTTCEEEEET-CTT-CHHHHHHHHT--TCSEEEEEESCHHHHHHHHHHCCCTTEEEEECCGGGCCCCTTCEEEEEE
T ss_pred             hhhccCCCEEEEEC-CCC-CHHHHHHHHc--CCCEEEEEECCHHHHHHHHHhhccCCeEEEEcchhhCCCCCCCeEEEEE
Confidence            34556889999997 444 8888888875  55 88999999988888876532  1 1222211122212357999996


Q ss_pred             cCc---------cHHHHHHhcccCCeEEEE
Q 016265          303 AIG---------QCDRAVKAIKEGGTVVAL  323 (392)
Q Consensus       303 ~~G---------~~~~~~~~l~~~G~iv~~  323 (392)
                      ...         .+..+.++|+|||+++..
T Consensus       115 ~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~  144 (253)
T 3g5l_A          115 SLALHYIASFDDICKKVYINLKSSGSFIFS  144 (253)
T ss_dssp             ESCGGGCSCHHHHHHHHHHHEEEEEEEEEE
T ss_pred             chhhhhhhhHHHHHHHHHHHcCCCcEEEEE
Confidence            532         147788899999998875

>1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: c.2.1.3 d.81.1.1

Probab=94.96  E-value=0.046  Score=50.89  Aligned_cols=85  Identities=16%  Similarity=0.210  Sum_probs=58.2

Q ss_pred             CeEEEEcCCCcHHHHHHHHHHH-hcCCeEEEE-eCCccc--HHHHHhcCCcEEEeCCCCccccC-----CCCccEEEecC
Q 016265          234 KSILVLNGSGGVGSLVIQLAKQ-VFGASRVAA-TSSTRN--LEFLKSLGADLAIDYTKDNFEDL-----PEKFDVVYDAI  304 (392)
Q Consensus       234 ~~VlI~Ga~G~vG~~aiqlak~-~~G~~vv~~-~~~~~~--~~~~~~~G~~~vi~~~~~~~~~~-----~~~~D~vid~~  304 (392)
                      -+|.|+| +|.+|...+..+.. ..+.+++.+ +.++++  ++.++++|.....    .++.++     ..++|+||+|+
T Consensus         5 irVaIIG-~G~iG~~~~~~l~~~~~~~elvav~d~~~~~~~~~~a~~~g~~~~~----~~~e~ll~~~~~~~iDvV~~at   79 (312)
T 1nvm_B            5 LKVAIIG-SGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQRMGVTTTY----AGVEGLIKLPEFADIDFVFDAT   79 (312)
T ss_dssp             EEEEEEC-CSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHHHHTTCCEES----SHHHHHHHSGGGGGEEEEEECS
T ss_pred             CEEEEEc-CcHHHHHHHHHHHhhCcCeEEEEEEeCChhhhHHHHHHHcCCCccc----CCHHHHHhccCCCCCcEEEECC
Confidence            4799998 89999988887743 346666655 445565  5667788865321    122222     24789999999


Q ss_pred             c---cHHHHHHhccc--CCeEEEE
Q 016265          305 G---QCDRAVKAIKE--GGTVVAL  323 (392)
Q Consensus       305 G---~~~~~~~~l~~--~G~iv~~  323 (392)
                      +   +.+.+.++++.  |..+++.
T Consensus        80 p~~~h~~~a~~al~a~~Gk~Vi~e  103 (312)
T 1nvm_B           80 SASAHVQNEALLRQAKPGIRLIDL  103 (312)
T ss_dssp             CHHHHHHHHHHHHHHCTTCEEEEC
T ss_pred             ChHHHHHHHHHHHHhCCCCEEEEc
Confidence            9   35778888887  8887764

>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A*

Probab=94.94  E-value=0.055  Score=48.17  Aligned_cols=73  Identities=25%  Similarity=0.306  Sum_probs=46.8

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeC-CcccHHHH----HhcCCcE-EE--eCCCC-ccccC-------CC
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATS-STRNLEFL----KSLGADL-AI--DYTKD-NFEDL-------PE  295 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~-~~~~~~~~----~~~G~~~-vi--~~~~~-~~~~~-------~~  295 (392)
                      .++++||+||+|++|.+.+..+.. .|++|+++++ +.++.+.+    ++.|.+. .+  |..+. .+.+.       -+
T Consensus         3 ~~k~~lVTGas~gIG~~ia~~l~~-~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g   81 (246)
T 3osu_A            3 MTKSALVTGASRGIGRSIALQLAE-EGYNVAVNYAGSKEKAEAVVEEIKAKGVDSFAIQANVADADEVKAMIKEVVSQFG   81 (246)
T ss_dssp             CSCEEEETTCSSHHHHHHHHHHHH-TTCEEEEEESSCHHHHHHHHHHHHHTTSCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCChHHHHHHHHHHH-CCCEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            467899999999999998776666 4999988876 44444332    3445433 22  22221 11111       23


Q ss_pred             CccEEEecCc
Q 016265          296 KFDVVYDAIG  305 (392)
Q Consensus       296 ~~D~vid~~G  305 (392)
                      ++|++|++.|
T Consensus        82 ~id~lv~nAg   91 (246)
T 3osu_A           82 SLDVLVNNAG   91 (246)
T ss_dssp             CCCEEEECCC
T ss_pred             CCCEEEECCC
Confidence            7899999876

>3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} SCOP: c.2.1.0 PDB: 3icp_A* 3aw9_A*

Probab=94.93  E-value=0.034  Score=51.14  Aligned_cols=69  Identities=20%  Similarity=0.250  Sum_probs=45.0

Q ss_pred             eEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEE-EeCCCCccccCCCCccEEEecCc
Q 016265          235 SILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLA-IDYTKDNFEDLPEKFDVVYDAIG  305 (392)
Q Consensus       235 ~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~v-i~~~~~~~~~~~~~~D~vid~~G  305 (392)
                      +|||+||+|.+|...++.+.. .|.+|++++++..+.......+...+ .|..+..+.+..++ |+||.+.+
T Consensus         2 ~vlVtGatG~iG~~l~~~L~~-~g~~V~~~~r~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-d~vih~A~   71 (312)
T 3ko8_A            2 RIVVTGGAGFIGSHLVDKLVE-LGYEVVVVDNLSSGRREFVNPSAELHVRDLKDYSWGAGIKG-DVVFHFAA   71 (312)
T ss_dssp             EEEEETTTSHHHHHHHHHHHH-TTCEEEEECCCSSCCGGGSCTTSEEECCCTTSTTTTTTCCC-SEEEECCS
T ss_pred             EEEEECCCChHHHHHHHHHHh-CCCEEEEEeCCCCCchhhcCCCceEEECccccHHHHhhcCC-CEEEECCC
Confidence            699999999999998888777 49999999876554332222222221 23333333333345 99999876

>3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.10A {Sinorhizobium meliloti}

Probab=94.91  E-value=0.05  Score=50.85  Aligned_cols=72  Identities=24%  Similarity=0.362  Sum_probs=46.0

Q ss_pred             CCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCC-----cccHHHH----HhcCCcE-EE--eCCCC-ccccC------
Q 016265          233 GKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSS-----TRNLEFL----KSLGADL-AI--DYTKD-NFEDL------  293 (392)
Q Consensus       233 g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~-----~~~~~~~----~~~G~~~-vi--~~~~~-~~~~~------  293 (392)
                      +.++||+||+|++|...++.+.. .|++|++++++     .++++.+    ++.|... .+  |..+. .+.+.      
T Consensus         5 ~k~vlVTGas~GIG~aia~~L~~-~G~~V~~~~r~~~~r~~~~~~~l~~~~~~~~~~~~~~~~Dvtd~~~v~~~~~~~~~   83 (324)
T 3u9l_A            5 KKIILITGASSGFGRLTAEALAG-AGHRVYASMRDIVGRNASNVEAIAGFARDNDVDLRTLELDVQSQVSVDRAIDQIIG   83 (324)
T ss_dssp             CCEEEESSCSSHHHHHHHHHHHH-TTCEEEEEESCTTTTTHHHHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHH-CCCEEEEecCcccccCHHHHHHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHHHHH
Confidence            67899999999999998877766 49999988764     2333333    2334332 22  32221 11111      


Q ss_pred             -CCCccEEEecCc
Q 016265          294 -PEKFDVVYDAIG  305 (392)
Q Consensus       294 -~~~~D~vid~~G  305 (392)
                       .+++|++|++.|
T Consensus        84 ~~g~iD~lVnnAG   96 (324)
T 3u9l_A           84 EDGRIDVLIHNAG   96 (324)
T ss_dssp             HHSCCSEEEECCC
T ss_pred             HcCCCCEEEECCC
Confidence             237999999987

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*

Probab=94.91  E-value=0.033  Score=50.74  Aligned_cols=95  Identities=19%  Similarity=0.329  Sum_probs=59.0

Q ss_pred             HHHhcCC-CCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHH-HhcCC--c-EEEeCCCCccccCC-CCc
Q 016265          224 GLERTGF-SAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFL-KSLGA--D-LAIDYTKDNFEDLP-EKF  297 (392)
Q Consensus       224 al~~~~~-~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~-~~~G~--~-~vi~~~~~~~~~~~-~~~  297 (392)
                      +|+..+. -.+.+++|+| +|++|.+++..+... |.+++++.++.+|.+.+ ++++.  . .+.+     +.+.. +.+
T Consensus       109 ~L~~~~~~~~~~~vlvlG-aGg~g~a~a~~L~~~-G~~v~v~~R~~~~a~~l~~~~~~~~~~~~~~-----~~~~~~~~~  181 (272)
T 1p77_A          109 DLQRLNWLRPNQHVLILG-AGGATKGVLLPLLQA-QQNIVLANRTFSKTKELAERFQPYGNIQAVS-----MDSIPLQTY  181 (272)
T ss_dssp             HHHHTTCCCTTCEEEEEC-CSHHHHTTHHHHHHT-TCEEEEEESSHHHHHHHHHHHGGGSCEEEEE-----GGGCCCSCC
T ss_pred             HHHHhCCCcCCCEEEEEC-CcHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHccccCCeEEee-----HHHhccCCC
Confidence            4444333 3578999999 699999988777764 88888999988876554 44432  1 1222     22332 379


Q ss_pred             cEEEecCcc-HH-H----HHHhcccCCeEEEEcC
Q 016265          298 DVVYDAIGQ-CD-R----AVKAIKEGGTVVALTG  325 (392)
Q Consensus       298 D~vid~~G~-~~-~----~~~~l~~~G~iv~~g~  325 (392)
                      |++|+|++. .. .    -...++++..++.+..
T Consensus       182 DivIn~t~~~~~~~~~~i~~~~l~~~~~v~D~~y  215 (272)
T 1p77_A          182 DLVINATSAGLSGGTASVDAEILKLGSAFYDMQY  215 (272)
T ss_dssp             SEEEECCCC-------CCCHHHHHHCSCEEESCC
T ss_pred             CEEEECCCCCCCCCCCCCCHHHcCCCCEEEEeeC
Confidence            999999873 11 1    1234556666666543

>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A*

Probab=94.91  E-value=0.082  Score=48.76  Aligned_cols=87  Identities=24%  Similarity=0.374  Sum_probs=56.7

Q ss_pred             CeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcc-cHHHH---HhcCCcEE-EeCCC-CccccCCCCccEEEecCcc-
Q 016265          234 KSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTR-NLEFL---KSLGADLA-IDYTK-DNFEDLPEKFDVVYDAIGQ-  306 (392)
Q Consensus       234 ~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~-~~~~~---~~~G~~~v-i~~~~-~~~~~~~~~~D~vid~~G~-  306 (392)
                      .+|||+||+|.+|...+..+.. .|.+|++++++.. +.+.+   ...|+..+ .|..+ +.+.+..+++|+||.+.+. 
T Consensus        12 ~~ilVtGatG~iG~~l~~~L~~-~g~~V~~l~R~~~~~~~~~~~l~~~~v~~v~~Dl~d~~~l~~a~~~~d~vi~~a~~~   90 (318)
T 2r6j_A           12 SKILIFGGTGYIGNHMVKGSLK-LGHPTYVFTRPNSSKTTLLDEFQSLGAIIVKGELDEHEKLVELMKKVDVVISALAFP   90 (318)
T ss_dssp             CCEEEETTTSTTHHHHHHHHHH-TTCCEEEEECTTCSCHHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEEECCCGG
T ss_pred             CeEEEECCCchHHHHHHHHHHH-CCCcEEEEECCCCchhhHHHHhhcCCCEEEEecCCCHHHHHHHHcCCCEEEECCchh
Confidence            4799999999999999888777 4899999988664 44433   34455432 23333 2233334589999999872 


Q ss_pred             ----HHHHHHhcccC---CeEE
Q 016265          307 ----CDRAVKAIKEG---GTVV  321 (392)
Q Consensus       307 ----~~~~~~~l~~~---G~iv  321 (392)
                          ...++++++..   +++|
T Consensus        91 ~~~~~~~l~~aa~~~g~v~~~v  112 (318)
T 2r6j_A           91 QILDQFKILEAIKVAGNIKRFL  112 (318)
T ss_dssp             GSTTHHHHHHHHHHHCCCCEEE
T ss_pred             hhHHHHHHHHHHHhcCCCCEEE
Confidence                24455555443   3665

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=94.90  E-value=0.17  Score=46.25  Aligned_cols=97  Identities=14%  Similarity=0.163  Sum_probs=65.0

Q ss_pred             HHhcCCCCCCeEEEEcCCCcHHHHHHHHHHHh-cCCeEEEEeCCcccHHHHHhc-------CCc-EEEeCCCCccccCC-
Q 016265          225 LERTGFSAGKSILVLNGSGGVGSLVIQLAKQV-FGASRVAATSSTRNLEFLKSL-------GAD-LAIDYTKDNFEDLP-  294 (392)
Q Consensus       225 l~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~-~G~~vv~~~~~~~~~~~~~~~-------G~~-~vi~~~~~~~~~~~-  294 (392)
                      +......++.+||=+| +| .|..+..+++.. .+.+++.++.++..++.+++.       ... .++..+-.++.... 
T Consensus        29 l~~~~~~~~~~vLDiG-cG-~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  106 (299)
T 3g5t_A           29 IDEYHDGERKLLVDVG-CG-PGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFKFLGA  106 (299)
T ss_dssp             HHHHCCSCCSEEEEET-CT-TTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCGGGCT
T ss_pred             HHHHhcCCCCEEEEEC-CC-CCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCCcccc
Confidence            3333446889999997 54 689999999753 478999999999888877653       111 22222222222122 


Q ss_pred             -----CCccEEEecCc--------cHHHHHHhcccCCeEEEE
Q 016265          295 -----EKFDVVYDAIG--------QCDRAVKAIKEGGTVVAL  323 (392)
Q Consensus       295 -----~~~D~vid~~G--------~~~~~~~~l~~~G~iv~~  323 (392)
                           +.||+|+....        .+..+.++|+|||+++..
T Consensus       107 ~~~~~~~fD~V~~~~~l~~~~~~~~l~~~~~~LkpgG~l~i~  148 (299)
T 3g5t_A          107 DSVDKQKIDMITAVECAHWFDFEKFQRSAYANLRKDGTIAIW  148 (299)
T ss_dssp             TTTTSSCEEEEEEESCGGGSCHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ccccCCCeeEEeHhhHHHHhCHHHHHHHHHHhcCCCcEEEEE
Confidence                 57999987532        257888899999999774

>3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti}

Probab=94.88  E-value=0.025  Score=51.07  Aligned_cols=38  Identities=18%  Similarity=0.294  Sum_probs=31.9

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCccc
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRN  270 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~  270 (392)
                      .+++|||+||+|++|.+.+..... .|++|++++++.++
T Consensus        27 ~~k~vlVTGas~gIG~aia~~l~~-~G~~V~~~~r~~~~   64 (260)
T 3un1_A           27 QQKVVVITGASQGIGAGLVRAYRD-RNYRVVATSRSIKP   64 (260)
T ss_dssp             TCCEEEESSCSSHHHHHHHHHHHH-TTCEEEEEESSCCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHH-CCCEEEEEeCChhh
Confidence            478999999999999998776666 49999999887654

>2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase, INHA, enoyl acyl carrier reductase, pyrrolid carboxamide; HET: NAD 566; 1.62A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A* 2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A* 2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A* 3fnh_A* 3oew_A* 2aqh_A* ...

Probab=94.87  E-value=0.054  Score=48.93  Aligned_cols=73  Identities=25%  Similarity=0.315  Sum_probs=47.7

Q ss_pred             CCCeEEEEcC--CCcHHHHHHHHHHHhcCCeEEEEeCCccc-HHHH-HhcCCc-EE--EeCCCCc-cccC-------CC-
Q 016265          232 AGKSILVLNG--SGGVGSLVIQLAKQVFGASRVAATSSTRN-LEFL-KSLGAD-LA--IDYTKDN-FEDL-------PE-  295 (392)
Q Consensus       232 ~g~~VlI~Ga--~G~vG~~aiqlak~~~G~~vv~~~~~~~~-~~~~-~~~G~~-~v--i~~~~~~-~~~~-------~~-  295 (392)
                      .|+++||+||  +|++|.+.++.+.. .|++|+++++++++ ++.+ ++++.. ..  .|..+.. +.+.       -+ 
T Consensus         6 ~~k~vlVTGa~~s~gIG~aia~~l~~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   84 (269)
T 2h7i_A            6 DGKRILVSGIITDSSIAFHIARVAQE-QGAQLVLTGFDRLRLIQRITDRLPAKAPLLELDVQNEEHLASLAGRVTEAIGA   84 (269)
T ss_dssp             TTCEEEECCCSSTTSHHHHHHHHHHH-TTCEEEEEECSCHHHHHHHHTTSSSCCCEEECCTTCHHHHHHHHHHHHHHHCT
T ss_pred             CCCEEEEECCCCCCchHHHHHHHHHH-CCCEEEEEecChHHHHHHHHHhcCCCceEEEccCCCHHHHHHHHHHHHHHhCC
Confidence            4789999998  89999998877666 49999999887655 3443 344432 12  2333321 1111       12 


Q ss_pred             --CccEEEecCc
Q 016265          296 --KFDVVYDAIG  305 (392)
Q Consensus       296 --~~D~vid~~G  305 (392)
                        ++|++|++.|
T Consensus        85 ~~~iD~lv~nAg   96 (269)
T 2h7i_A           85 GNKLDGVVHSIG   96 (269)
T ss_dssp             TCCEEEEEECCC
T ss_pred             CCCceEEEECCc
Confidence              7999999865

>3u0b_A Oxidoreductase, short chain dehydrogenase/reducta protein; structural genomics, ssgcid; 1.70A {Mycobacterium smegmatis} PDB: 3lls_A 3v1t_C 3v1u_A* 4fw8_A* 3q6i_A* 3m1l_A

Probab=94.87  E-value=0.13  Score=50.36  Aligned_cols=73  Identities=23%  Similarity=0.385  Sum_probs=46.9

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCccc--H-HHHHhcCCcEE-EeCCCCc-ccc--------CCCCcc
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRN--L-EFLKSLGADLA-IDYTKDN-FED--------LPEKFD  298 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~--~-~~~~~~G~~~v-i~~~~~~-~~~--------~~~~~D  298 (392)
                      .|.++||+||+|++|...+..... .|++++++.++...  + +..++.+...+ .|..+.. ..+        .+..+|
T Consensus       212 ~gk~~LVTGgsgGIG~aiA~~La~-~Ga~Vvl~~r~~~~~~l~~~~~~~~~~~~~~Dvtd~~~v~~~~~~~~~~~g~~id  290 (454)
T 3u0b_A          212 DGKVAVVTGAARGIGATIAEVFAR-DGATVVAIDVDGAAEDLKRVADKVGGTALTLDVTADDAVDKITAHVTEHHGGKVD  290 (454)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHH-TTCEEEEEECGGGHHHHHHHHHHHTCEEEECCTTSTTHHHHHHHHHHHHSTTCCS
T ss_pred             CCCEEEEeCCchHHHHHHHHHHHH-CCCEEEEEeCCccHHHHHHHHHHcCCeEEEEecCCHHHHHHHHHHHHHHcCCCce
Confidence            578999999999999997776666 49998888775432  2 23345554321 2332221 111        122499


Q ss_pred             EEEecCc
Q 016265          299 VVYDAIG  305 (392)
Q Consensus       299 ~vid~~G  305 (392)
                      ++|++.|
T Consensus       291 ~lV~nAG  297 (454)
T 3u0b_A          291 ILVNNAG  297 (454)
T ss_dssp             EEEECCC
T ss_pred             EEEECCc
Confidence            9999987

>2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural genomics, southea collaboratory for structural genomics, secsg; 1.91A {Thermus thermophilus HB8}

Probab=94.86  E-value=0.045  Score=48.36  Aligned_cols=72  Identities=17%  Similarity=0.232  Sum_probs=46.7

Q ss_pred             CCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEE-eCCcccHHHH----HhcCCcE-E-E--eCCCCc-cccC-------CC
Q 016265          233 GKSILVLNGSGGVGSLVIQLAKQVFGASRVAA-TSSTRNLEFL----KSLGADL-A-I--DYTKDN-FEDL-------PE  295 (392)
Q Consensus       233 g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~-~~~~~~~~~~----~~~G~~~-v-i--~~~~~~-~~~~-------~~  295 (392)
                      +++|+|+||+|++|...++.+.. .|++|+++ .++.++.+.+    ++.|... . +  |..+.. +.+.       .+
T Consensus         1 ~k~vlITGasggiG~~~a~~l~~-~G~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   79 (245)
T 2ph3_A            1 MRKALITGASRGIGRAIALRLAE-DGFALAIHYGQNREKAEEVAEEARRRGSPLVAVLGANLLEAEAATALVHQAAEVLG   79 (245)
T ss_dssp             CCEEEETTTTSHHHHHHHHHHHT-TTCEEEEEESSCHHHHHHHHHHHHHTTCSCEEEEECCTTSHHHHHHHHHHHHHHHT
T ss_pred             CCEEEEeCCCchHHHHHHHHHHH-CCCEEEEEcCCCHHHHHHHHHHHHhcCCceEEEEeccCCCHHHHHHHHHHHHHhcC
Confidence            46899999999999998877766 49999888 6776665443    2334332 2 3  332211 1111       24


Q ss_pred             CccEEEecCc
Q 016265          296 KFDVVYDAIG  305 (392)
Q Consensus       296 ~~D~vid~~G  305 (392)
                      ++|++|.+.|
T Consensus        80 ~~d~li~~Ag   89 (245)
T 2ph3_A           80 GLDTLVNNAG   89 (245)
T ss_dssp             CCCEEEECCC
T ss_pred             CCCEEEECCC
Confidence            7899999876

>3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein, unknown function, structural genomics, MCSG, protein structure initiative; 2.00A {Saccharomyces cerevisiae}

Probab=94.84  E-value=0.049  Score=48.81  Aligned_cols=73  Identities=27%  Similarity=0.380  Sum_probs=46.3

Q ss_pred             CCeEEEEcCCCcHHHHHHHHHHHhc-CCeEEEEeCCcccHHHHH-hcCCcE-EE--eCCCCc-cccC-------CCCccE
Q 016265          233 GKSILVLNGSGGVGSLVIQLAKQVF-GASRVAATSSTRNLEFLK-SLGADL-AI--DYTKDN-FEDL-------PEKFDV  299 (392)
Q Consensus       233 g~~VlI~Ga~G~vG~~aiqlak~~~-G~~vv~~~~~~~~~~~~~-~~G~~~-vi--~~~~~~-~~~~-------~~~~D~  299 (392)
                      |+++||+||++++|.+.++...... |+.|+++.+++++++.+. ++|... .+  |..+.. +.+.       .+++|+
T Consensus         2 gk~~lVTGas~GIG~aia~~l~~~g~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~   81 (254)
T 3kzv_A            2 GKVILVTGVSRGIGKSIVDVLFSLDKDTVVYGVARSEAPLKKLKEKYGDRFFYVVGDITEDSVLKQLVNAAVKGHGKIDS   81 (254)
T ss_dssp             CCEEEECSTTSHHHHHHHHHHHHHCSSCEEEEEESCHHHHHHHHHHHGGGEEEEESCTTSHHHHHHHHHHHHHHHSCCCE
T ss_pred             CCEEEEECCCchHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHHHHHhcCCccE
Confidence            5789999999999998776543422 467878888887766554 444332 22  332221 1111       237899


Q ss_pred             EEecCc
Q 016265          300 VYDAIG  305 (392)
Q Consensus       300 vid~~G  305 (392)
                      +|++.|
T Consensus        82 lvnnAg   87 (254)
T 3kzv_A           82 LVANAG   87 (254)
T ss_dssp             EEEECC
T ss_pred             EEECCc
Confidence            999876

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=94.84  E-value=0.04  Score=49.47  Aligned_cols=94  Identities=17%  Similarity=0.241  Sum_probs=62.6

Q ss_pred             CCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHh----cCCc--EEEeCCCCcccc---CCCCccEE
Q 016265          230 FSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKS----LGAD--LAIDYTKDNFED---LPEKFDVV  300 (392)
Q Consensus       230 ~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~----~G~~--~vi~~~~~~~~~---~~~~~D~v  300 (392)
                      ..++++||=+| +| .|..++.+|+...+++++.++.+++..+.+++    +|..  .++..+-.++..   ..+.||+|
T Consensus        78 ~~~~~~vLDiG-~G-~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~~d~~~~~~~~~~~~~fD~I  155 (249)
T 3g89_A           78 WQGPLRVLDLG-TG-AGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLKGARALWGRAEVLAREAGHREAYARA  155 (249)
T ss_dssp             CCSSCEEEEET-CT-TTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEECCHHHHTTSTTTTTCEEEE
T ss_pred             cCCCCEEEEEc-CC-CCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCceEEEECcHHHhhcccccCCCceEE
Confidence            35788998887 43 47777778876336789999999998887753    4653  233332222221   13579999


Q ss_pred             Eec-Ccc----HHHHHHhcccCCeEEEEcC
Q 016265          301 YDA-IGQ----CDRAVKAIKEGGTVVALTG  325 (392)
Q Consensus       301 id~-~G~----~~~~~~~l~~~G~iv~~g~  325 (392)
                      +.. +..    ++.+.++|++||+++.+-+
T Consensus       156 ~s~a~~~~~~ll~~~~~~LkpgG~l~~~~g  185 (249)
T 3g89_A          156 VARAVAPLCVLSELLLPFLEVGGAAVAMKG  185 (249)
T ss_dssp             EEESSCCHHHHHHHHGGGEEEEEEEEEEEC
T ss_pred             EECCcCCHHHHHHHHHHHcCCCeEEEEEeC
Confidence            864 333    3667788999999987643

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=94.83  E-value=0.093  Score=47.89  Aligned_cols=65  Identities=20%  Similarity=0.269  Sum_probs=48.3

Q ss_pred             CeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCCccccCCCCccEEEecCc
Q 016265          234 KSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFEDLPEKFDVVYDAIG  305 (392)
Q Consensus       234 ~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~~~~~~~D~vid~~G  305 (392)
                      .+|.|+|++|.+|...+..+.. .|.+|++.++++++.+.+.+.|.+.    .  +..+..+++|+||.|+.
T Consensus        12 m~I~iIG~tG~mG~~la~~l~~-~g~~V~~~~r~~~~~~~~~~~g~~~----~--~~~~~~~~aDvVi~av~   76 (286)
T 3c24_A           12 KTVAILGAGGKMGARITRKIHD-SAHHLAAIEIAPEGRDRLQGMGIPL----T--DGDGWIDEADVVVLALP   76 (286)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHH-SSSEEEEECCSHHHHHHHHHTTCCC----C--CSSGGGGTCSEEEECSC
T ss_pred             CEEEEECCCCHHHHHHHHHHHh-CCCEEEEEECCHHHHHHHHhcCCCc----C--CHHHHhcCCCEEEEcCC
Confidence            3799999449999988877766 5888988888888888887777432    1  22233357899999987

>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}

Probab=94.83  E-value=0.04  Score=52.68  Aligned_cols=86  Identities=27%  Similarity=0.368  Sum_probs=53.1

Q ss_pred             CCCCCeEEEEcCCCcHHHHHHHHHHHhcCC-eEEEEeCCcccHHH----HHhcCCcE---EEeCCCCccccCCCCccEEE
Q 016265          230 FSAGKSILVLNGSGGVGSLVIQLAKQVFGA-SRVAATSSTRNLEF----LKSLGADL---AIDYTKDNFEDLPEKFDVVY  301 (392)
Q Consensus       230 ~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~-~vv~~~~~~~~~~~----~~~~G~~~---vi~~~~~~~~~~~~~~D~vi  301 (392)
                      ..+|++||-+| +|. |++++..|++  |+ +|++++.++ -.+.    ++..|...   ++..+-+++ ++.+++|+|+
T Consensus        81 ~~~~k~VLDvG-~Gt-GiLs~~Aa~a--GA~~V~ave~s~-~~~~a~~~~~~n~~~~~i~~i~~~~~~~-~lpe~~Dviv  154 (376)
T 4hc4_A           81 ALRGKTVLDVG-AGT-GILSIFCAQA--GARRVYAVEASA-IWQQAREVVRFNGLEDRVHVLPGPVETV-ELPEQVDAIV  154 (376)
T ss_dssp             HHTTCEEEEET-CTT-SHHHHHHHHT--TCSEEEEEECST-THHHHHHHHHHTTCTTTEEEEESCTTTC-CCSSCEEEEE
T ss_pred             hcCCCEEEEeC-CCc-cHHHHHHHHh--CCCEEEEEeChH-HHHHHHHHHHHcCCCceEEEEeeeeeee-cCCccccEEE
Confidence            45789999998 554 7888877764  76 577777664 2333    34456432   333322222 3457899998


Q ss_pred             e-cCc-------cH----HHHHHhcccCCeEE
Q 016265          302 D-AIG-------QC----DRAVKAIKEGGTVV  321 (392)
Q Consensus       302 d-~~G-------~~----~~~~~~l~~~G~iv  321 (392)
                      . ..|       .+    ...-+.|+|+|+++
T Consensus       155 sE~~~~~l~~e~~l~~~l~a~~r~Lkp~G~~i  186 (376)
T 4hc4_A          155 SEWMGYGLLHESMLSSVLHARTKWLKEGGLLL  186 (376)
T ss_dssp             CCCCBTTBTTTCSHHHHHHHHHHHEEEEEEEE
T ss_pred             eecccccccccchhhhHHHHHHhhCCCCceEC
Confidence            4 233       12    34447899999986

>3zu3_A Putative reductase YPO4104/Y4119/YP_4011; oxidoreductase, fatty acid biosynthesis II, short-chain dehydrogenase reductase superfamily; HET: NAI; 1.80A {Yersinia pestis} PDB: 3zu4_A* 3zu5_A* 3zu2_A*

Probab=94.83  E-value=0.11  Score=49.88  Aligned_cols=37  Identities=24%  Similarity=0.249  Sum_probs=28.7

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHHHH-hcCCeEEEEeCCc
Q 016265          231 SAGKSILVLNGSGGVGSLVIQLAKQ-VFGASRVAATSST  268 (392)
Q Consensus       231 ~~g~~VlI~Ga~G~vG~~aiqlak~-~~G~~vv~~~~~~  268 (392)
                      ..|+++||+||++++|++.+..+.. . |++|+++.++.
T Consensus        45 ~~gKvaLVTGas~GIG~AiA~~LA~g~-GA~Vv~~~~~~   82 (405)
T 3zu3_A           45 NGPKRVLVIGASTGYGLAARITAAFGC-GADTLGVFFER   82 (405)
T ss_dssp             TCCSEEEEESCSSHHHHHHHHHHHHHH-CCEEEEEECCC
T ss_pred             CCCCEEEEeCcchHHHHHHHHHHHHhc-CCEEEEEeCCc
Confidence            5578899999999999986654433 4 99999887643

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=94.82  E-value=0.062  Score=49.29  Aligned_cols=83  Identities=16%  Similarity=0.245  Sum_probs=57.5

Q ss_pred             eEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCCccccCCCCccEEEecCcc---HHHHH
Q 016265          235 SILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFEDLPEKFDVVYDAIGQ---CDRAV  311 (392)
Q Consensus       235 ~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~~~~~~~D~vid~~G~---~~~~~  311 (392)
                      +|.|+| +|.+|...+..+.. .|.+|++.++++++.+.+++.|....     .+..+..+++|+||.|+..   .+..+
T Consensus         7 ~i~iiG-~G~~G~~~a~~l~~-~g~~V~~~~~~~~~~~~~~~~g~~~~-----~~~~~~~~~~D~vi~~v~~~~~~~~~~   79 (299)
T 1vpd_A            7 KVGFIG-LGIMGKPMSKNLLK-AGYSLVVSDRNPEAIADVIAAGAETA-----STAKAIAEQCDVIITMLPNSPHVKEVA   79 (299)
T ss_dssp             EEEEEC-CSTTHHHHHHHHHH-TTCEEEEECSCHHHHHHHHHTTCEEC-----SSHHHHHHHCSEEEECCSSHHHHHHHH
T ss_pred             eEEEEC-chHHHHHHHHHHHh-CCCEEEEEeCCHHHHHHHHHCCCeec-----CCHHHHHhCCCEEEEECCCHHHHHHHH
Confidence            799998 99999988877766 48898888888888888877664321     1222223357999999872   33333


Q ss_pred             -------HhcccCCeEEEEc
Q 016265          312 -------KAIKEGGTVVALT  324 (392)
Q Consensus       312 -------~~l~~~G~iv~~g  324 (392)
                             ..++++..++.++
T Consensus        80 ~~~~~l~~~l~~~~~vv~~s   99 (299)
T 1vpd_A           80 LGENGIIEGAKPGTVLIDMS   99 (299)
T ss_dssp             HSTTCHHHHCCTTCEEEECS
T ss_pred             hCcchHhhcCCCCCEEEECC
Confidence                   4566776666654

>1u8f_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase, liver; rossmann fold, oxidoreductase, mammalian GAPDH; HET: NAD; 1.75A {Homo sapiens} SCOP: c.2.1.3 d.81.1.1 PDB: 1znq_O* 1j0x_O* 3gpd_R* 1dss_G* 1crw_G* 1szj_G* 1ihx_A* 1ihy_A* 1gpd_G* 4gpd_1

Probab=94.81  E-value=0.23  Score=46.64  Aligned_cols=91  Identities=16%  Similarity=0.235  Sum_probs=58.7

Q ss_pred             eEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeC---CcccHHHHHhc-------CCc-------EEEe------CCCCccc
Q 016265          235 SILVLNGSGGVGSLVIQLAKQVFGASRVAATS---STRNLEFLKSL-------GAD-------LAID------YTKDNFE  291 (392)
Q Consensus       235 ~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~---~~~~~~~~~~~-------G~~-------~vi~------~~~~~~~  291 (392)
                      +|.|.| .|-+|...++++....+.+++.+..   +.+++..+.++       ...       .+++      ....+..
T Consensus         5 kVgI~G-~G~iGr~~~R~l~~~~~vevvaI~d~~~~~~~~a~l~~~ds~~g~~~~~~~~~~~~l~v~g~~i~v~~~~d~~   83 (335)
T 1u8f_O            5 KVGVNG-FGRIGRLVTRAAFNSGKVDIVAINDPFIDLNYMVYMFQYDSTHGKFHGTVKAENGKLVINGNPITIFQERDPS   83 (335)
T ss_dssp             EEEEEC-CSHHHHHHHHHHHHHCSSEEEEEECSSSCHHHHHHHHHCCTTTCSCSSCEEEETTEEEETTEEEEEECCSSGG
T ss_pred             EEEEEc-cCHHHHHHHHHHHcCCCcEEEEecCCCCCHHHHHHHhhcccccCCCCCceEEcCCeEEECCeEEEEEecCCHH
Confidence            689999 6999999988876544677776654   34455554432       111       1121      1112333


Q ss_pred             cCC---CCccEEEecCcc---HHHHHHhcccCCeEEEEcCC
Q 016265          292 DLP---EKFDVVYDAIGQ---CDRAVKAIKEGGTVVALTGA  326 (392)
Q Consensus       292 ~~~---~~~D~vid~~G~---~~~~~~~l~~~G~iv~~g~~  326 (392)
                      ++.   .++|+||+|+|.   .+.+.++++.|-+.|.++.+
T Consensus        84 ~l~~~~~~vDvV~eatg~~~~~e~a~~~l~aGak~V~iSap  124 (335)
T 1u8f_O           84 KIKWGDAGAEYVVESTGVFTTMEKAGAHLQGGAKRVIISAP  124 (335)
T ss_dssp             GCCTTTTTCCEEEECSSSCCSHHHHGGGGGGTCSEEEESSC
T ss_pred             HCccccCCCCEEEECCCchhhHHHHHHHHhCCCeEEEeccC
Confidence            332   489999999983   57777788887788888765

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}

Probab=94.81  E-value=0.048  Score=48.03  Aligned_cols=91  Identities=15%  Similarity=0.146  Sum_probs=62.9

Q ss_pred             CCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCc---EEEeCCCCccccCCCCccEEEecCc-
Q 016265          230 FSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGAD---LAIDYTKDNFEDLPEKFDVVYDAIG-  305 (392)
Q Consensus       230 ~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~---~vi~~~~~~~~~~~~~~D~vid~~G-  305 (392)
                      +.++.+||=+| +| .|..+..+++.  |++++.++.++..++.+++....   .++..+-.......+.+|+|+.... 
T Consensus        51 ~~~~~~vLDiG-~G-~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l  126 (242)
T 3l8d_A           51 VKKEAEVLDVG-CG-DGYGTYKLSRT--GYKAVGVDISEVMIQKGKERGEGPDLSFIKGDLSSLPFENEQFEAIMAINSL  126 (242)
T ss_dssp             SCTTCEEEEET-CT-TSHHHHHHHHT--TCEEEEEESCHHHHHHHHTTTCBTTEEEEECBTTBCSSCTTCEEEEEEESCT
T ss_pred             cCCCCeEEEEc-CC-CCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhcccCCceEEEcchhcCCCCCCCccEEEEcChH
Confidence            56889999997 44 58888888874  88999999999988888875321   1222211122212457999996532 


Q ss_pred             --------cHHHHHHhcccCCeEEEEc
Q 016265          306 --------QCDRAVKAIKEGGTVVALT  324 (392)
Q Consensus       306 --------~~~~~~~~l~~~G~iv~~g  324 (392)
                              .+..+.++|++||+++...
T Consensus       127 ~~~~~~~~~l~~~~~~L~pgG~l~i~~  153 (242)
T 3l8d_A          127 EWTEEPLRALNEIKRVLKSDGYACIAI  153 (242)
T ss_dssp             TSSSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             hhccCHHHHHHHHHHHhCCCeEEEEEE
Confidence                    1478888999999988764

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=94.80  E-value=0.07  Score=48.75  Aligned_cols=84  Identities=21%  Similarity=0.259  Sum_probs=55.7

Q ss_pred             CeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCCccccCCCCccEEEecCcc---HHHH
Q 016265          234 KSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFEDLPEKFDVVYDAIGQ---CDRA  310 (392)
Q Consensus       234 ~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~~~~~~~D~vid~~G~---~~~~  310 (392)
                      .+|.|+| .|.+|...++.+.. .|.+|++.++++++.+.+.+.|....     .+..+..++.|+||.|+..   .+..
T Consensus         2 ~~i~iIG-~G~mG~~~a~~l~~-~G~~V~~~dr~~~~~~~~~~~g~~~~-----~~~~~~~~~aDvvi~~vp~~~~~~~v   74 (287)
T 3pef_A            2 QKFGFIG-LGIMGSAMAKNLVK-AGCSVTIWNRSPEKAEELAALGAERA-----ATPCEVVESCPVTFAMLADPAAAEEV   74 (287)
T ss_dssp             CEEEEEC-CSHHHHHHHHHHHH-TTCEEEEECSSGGGGHHHHHTTCEEC-----SSHHHHHHHCSEEEECCSSHHHHHHH
T ss_pred             CEEEEEe-ecHHHHHHHHHHHH-CCCeEEEEcCCHHHHHHHHHCCCeec-----CCHHHHHhcCCEEEEEcCCHHHHHHH
Confidence            4789998 99999988877776 49999999999999888877765321     1222222346777777762   2222


Q ss_pred             H-------HhcccCCeEEEEc
Q 016265          311 V-------KAIKEGGTVVALT  324 (392)
Q Consensus       311 ~-------~~l~~~G~iv~~g  324 (392)
                      +       ..++++..++..+
T Consensus        75 ~~~~~~l~~~l~~~~~vi~~s   95 (287)
T 3pef_A           75 CFGKHGVLEGIGEGRGYVDMS   95 (287)
T ss_dssp             HHSTTCHHHHCCTTCEEEECS
T ss_pred             HcCcchHhhcCCCCCEEEeCC
Confidence            2       4455555555553

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*

Probab=94.79  E-value=0.13  Score=45.61  Aligned_cols=96  Identities=16%  Similarity=0.173  Sum_probs=57.8

Q ss_pred             HhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhc-CCeEEEEeCCcccHHH----HHhcCCcEEEeCCCCcc---ccCCCCc
Q 016265          226 ERTGFSAGKSILVLNGSGGVGSLVIQLAKQVF-GASRVAATSSTRNLEF----LKSLGADLAIDYTKDNF---EDLPEKF  297 (392)
Q Consensus       226 ~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~-G~~vv~~~~~~~~~~~----~~~~G~~~vi~~~~~~~---~~~~~~~  297 (392)
                      +...+++|++||=+| +|+ |..+..+|+.+. ..+|+.++.++..++.    +++..--..+..+....   ....+.|
T Consensus        70 ~~~~l~~g~~VLDlG-~Gt-G~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r~nv~~i~~Da~~~~~~~~~~~~~  147 (232)
T 3id6_C           70 KTNPIRKGTKVLYLG-AAS-GTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRRPNIFPLLADARFPQSYKSVVENV  147 (232)
T ss_dssp             SCCSCCTTCEEEEET-CTT-SHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHCTTEEEEECCTTCGGGTTTTCCCE
T ss_pred             hhcCCCCCCEEEEEe-ecC-CHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCeEEEEcccccchhhhccccce
Confidence            446689999999998 443 567777887652 3589999998876432    33321111222221111   1234579


Q ss_pred             cEEEecCcc------H-HHHHHhcccCCeEEEE
Q 016265          298 DVVYDAIGQ------C-DRAVKAIKEGGTVVAL  323 (392)
Q Consensus       298 D~vid~~G~------~-~~~~~~l~~~G~iv~~  323 (392)
                      |+|+-....      + ..+.+.|++||+++..
T Consensus       148 D~I~~d~a~~~~~~il~~~~~~~LkpGG~lvis  180 (232)
T 3id6_C          148 DVLYVDIAQPDQTDIAIYNAKFFLKVNGDMLLV  180 (232)
T ss_dssp             EEEEECCCCTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             EEEEecCCChhHHHHHHHHHHHhCCCCeEEEEE
Confidence            999855431      1 2333489999999865

>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1

Probab=94.78  E-value=0.077  Score=50.42  Aligned_cols=50  Identities=20%  Similarity=0.192  Sum_probs=40.7

Q ss_pred             CCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHH-HHHhcCCcE
Q 016265          230 FSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLE-FLKSLGADL  281 (392)
Q Consensus       230 ~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~-~~~~~G~~~  281 (392)
                      --.|.+|+|.| .|.+|..+++.+.. .|++|++.+.+.++++ +++++|++.
T Consensus       170 ~L~GktV~V~G-~G~VG~~~A~~L~~-~GakVvv~D~~~~~l~~~a~~~ga~~  220 (364)
T 1leh_A          170 SLEGLAVSVQG-LGNVAKALCKKLNT-EGAKLVVTDVNKAAVSAAVAEEGADA  220 (364)
T ss_dssp             CCTTCEEEEEC-CSHHHHHHHHHHHH-TTCEEEEECSCHHHHHHHHHHHCCEE
T ss_pred             CCCcCEEEEEC-chHHHHHHHHHHHH-CCCEEEEEcCCHHHHHHHHHHcCCEE
Confidence            35789999998 89999999999998 5999998888877766 455667643

>4e4y_A Short chain dehydrogenase family protein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; 1.80A {Francisella tularensis subsp}

Probab=94.76  E-value=0.027  Score=50.12  Aligned_cols=38  Identities=26%  Similarity=0.295  Sum_probs=27.9

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcc
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTR  269 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~  269 (392)
                      .+.++||+||+|++|.+.++......|.++++.+++++
T Consensus         3 ~~k~vlITGas~gIG~~~a~~l~~~~g~~v~~~~~~~~   40 (244)
T 4e4y_A            3 AMANYLVTGGSKGIGKAVVELLLQNKNHTVINIDIQQS   40 (244)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHTTSTTEEEEEEESSCC
T ss_pred             CCCeEEEeCCCChHHHHHHHHHHhcCCcEEEEeccccc
Confidence            46789999999999998775443313777777776554

>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A*

Probab=94.75  E-value=0.059  Score=50.09  Aligned_cols=80  Identities=16%  Similarity=0.267  Sum_probs=49.2

Q ss_pred             HHHhcCC-CCCCeEEEEcCCCcHHHHHHHHHHHhcCC-eEEEEeCC---cccHHHH-Hhc----CCc-EEEeCCCCc-cc
Q 016265          224 GLERTGF-SAGKSILVLNGSGGVGSLVIQLAKQVFGA-SRVAATSS---TRNLEFL-KSL----GAD-LAIDYTKDN-FE  291 (392)
Q Consensus       224 al~~~~~-~~g~~VlI~Ga~G~vG~~aiqlak~~~G~-~vv~~~~~---~~~~~~~-~~~----G~~-~vi~~~~~~-~~  291 (392)
                      +|+...+ -.|.+++|+| +|++|.+++..+.. .|+ +++++.++   .+|.+.+ +++    +.. .+++..+.. ..
T Consensus       138 ~L~~~~~~l~gk~~lVlG-AGGaaraia~~L~~-~G~~~v~v~nRt~~~~~~a~~la~~~~~~~~~~v~~~~~~~l~~~~  215 (312)
T 3t4e_A          138 AIKESGFDMRGKTMVLLG-AGGAATAIGAQAAI-EGIKEIKLFNRKDDFFEKAVAFAKRVNENTDCVVTVTDLADQHAFT  215 (312)
T ss_dssp             HHHHTTCCCTTCEEEEEC-CSHHHHHHHHHHHH-TTCSEEEEEECSSTHHHHHHHHHHHHHHHSSCEEEEEETTCHHHHH
T ss_pred             HHHhcCCCcCCCEEEEEC-cCHHHHHHHHHHHH-cCCCEEEEEECCCchHHHHHHHHHHhhhccCcceEEechHhhhhhH
Confidence            4444343 3578999998 79999998887777 498 67788888   4554433 223    222 233332210 12


Q ss_pred             cCCCCccEEEecCc
Q 016265          292 DLPEKFDVVYDAIG  305 (392)
Q Consensus       292 ~~~~~~D~vid~~G  305 (392)
                      +....+|+||+|++
T Consensus       216 ~~l~~~DiIINaTp  229 (312)
T 3t4e_A          216 EALASADILTNGTK  229 (312)
T ss_dssp             HHHHHCSEEEECSS
T ss_pred             hhccCceEEEECCc
Confidence            22346899999976

>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium}

Probab=94.74  E-value=0.04  Score=50.10  Aligned_cols=71  Identities=21%  Similarity=0.277  Sum_probs=48.5

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHH-HhcCCcE-EE--eCCCCc-cc----c--CCCCccEE
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFL-KSLGADL-AI--DYTKDN-FE----D--LPEKFDVV  300 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~-~~~G~~~-vi--~~~~~~-~~----~--~~~~~D~v  300 (392)
                      .|+++||+||+|++|.+.++.... .|++|++++++.++++.+ ++++... ++  |..+.. +.    +  ...++|++
T Consensus        29 ~~k~vlVTGas~GIG~aia~~l~~-~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~~id~l  107 (281)
T 3ppi_A           29 EGASAIVSGGAGGLGEATVRRLHA-DGLGVVIADLAAEKGKALADELGNRAEFVSTNVTSEDSVLAAIEAANQLGRLRYA  107 (281)
T ss_dssp             TTEEEEEETTTSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHCTTEEEEECCTTCHHHHHHHHHHHTTSSEEEEE
T ss_pred             CCCEEEEECCCChHHHHHHHHHHH-CCCEEEEEeCChHHHHHHHHHhCCceEEEEcCCCCHHHHHHHHHHHHHhCCCCeE
Confidence            578999999999999998777666 499999999988876655 4555432 22  322211 11    1  12368999


Q ss_pred             Eec
Q 016265          301 YDA  303 (392)
Q Consensus       301 id~  303 (392)
                      |.+
T Consensus       108 v~~  110 (281)
T 3ppi_A          108 VVA  110 (281)
T ss_dssp             EEC
T ss_pred             EEc
Confidence            887

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=94.72  E-value=0.13  Score=47.20  Aligned_cols=87  Identities=17%  Similarity=0.184  Sum_probs=56.2

Q ss_pred             eEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEE-------eCCCCccccCCC---CccEEEecC
Q 016265          235 SILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAI-------DYTKDNFEDLPE---KFDVVYDAI  304 (392)
Q Consensus       235 ~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi-------~~~~~~~~~~~~---~~D~vid~~  304 (392)
                      +|+|+| +|.+|...+..+.. .|.+|++.++++++.+.+++.|.....       .....+..+..+   ++|+||-|+
T Consensus         5 ~i~iiG-~G~~G~~~a~~l~~-~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~v   82 (316)
T 2ew2_A            5 KIAIAG-AGAMGSRLGIMLHQ-GGNDVTLIDQWPAHIEAIRKNGLIADFNGEEVVANLPIFSPEEIDHQNEQVDLIIALT   82 (316)
T ss_dssp             EEEEEC-CSHHHHHHHHHHHH-TTCEEEEECSCHHHHHHHHHHCEEEEETTEEEEECCCEECGGGCCTTSCCCSEEEECS
T ss_pred             eEEEEC-cCHHHHHHHHHHHh-CCCcEEEEECCHHHHHHHHhCCEEEEeCCCeeEecceeecchhhcccCCCCCEEEEEe
Confidence            699998 89999887776666 488999999988888888776643211       000001122223   789999998


Q ss_pred             cc--HHHHH----HhcccCCeEEEE
Q 016265          305 GQ--CDRAV----KAIKEGGTVVAL  323 (392)
Q Consensus       305 G~--~~~~~----~~l~~~G~iv~~  323 (392)
                      ..  ...++    ..++++..++.+
T Consensus        83 ~~~~~~~v~~~l~~~l~~~~~iv~~  107 (316)
T 2ew2_A           83 KAQQLDAMFKAIQPMITEKTYVLCL  107 (316)
T ss_dssp             CHHHHHHHHHHHGGGCCTTCEEEEC
T ss_pred             ccccHHHHHHHHHHhcCCCCEEEEe
Confidence            73  33333    345555566665

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=94.71  E-value=0.23  Score=43.74  Aligned_cols=91  Identities=18%  Similarity=0.175  Sum_probs=56.9

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcc-cHHHHHhcCCcEEEeCCCCccccCCCCccEEEecCcc--HH
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTR-NLEFLKSLGADLAIDYTKDNFEDLPEKFDVVYDAIGQ--CD  308 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~-~~~~~~~~G~~~vi~~~~~~~~~~~~~~D~vid~~G~--~~  308 (392)
                      .|.+|||.| +|.+|...+..+.. .|++|++++.... .++.+.+.|.-..+. .... .+...++|+||-+++.  .+
T Consensus        30 ~gk~VLVVG-gG~va~~ka~~Ll~-~GA~VtVvap~~~~~l~~l~~~~~i~~i~-~~~~-~~dL~~adLVIaAT~d~~~N  105 (223)
T 3dfz_A           30 KGRSVLVVG-GGTIATRRIKGFLQ-EGAAITVVAPTVSAEINEWEAKGQLRVKR-KKVG-EEDLLNVFFIVVATNDQAVN  105 (223)
T ss_dssp             TTCCEEEEC-CSHHHHHHHHHHGG-GCCCEEEECSSCCHHHHHHHHTTSCEEEC-SCCC-GGGSSSCSEEEECCCCTHHH
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHH-CCCEEEEECCCCCHHHHHHHHcCCcEEEE-CCCC-HhHhCCCCEEEECCCCHHHH
Confidence            578999998 89999999988877 4999988876432 344343333222222 1111 1223589999999983  45


Q ss_pred             HHHHhcccCCeEEEEcCC
Q 016265          309 RAVKAIKEGGTVVALTGA  326 (392)
Q Consensus       309 ~~~~~l~~~G~iv~~g~~  326 (392)
                      ..+...+..|..|.....
T Consensus       106 ~~I~~~ak~gi~VNvvD~  123 (223)
T 3dfz_A          106 KFVKQHIKNDQLVNMASS  123 (223)
T ss_dssp             HHHHHHSCTTCEEEC---
T ss_pred             HHHHHHHhCCCEEEEeCC
Confidence            444444557887766443

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=94.71  E-value=0.025  Score=49.59  Aligned_cols=94  Identities=18%  Similarity=0.176  Sum_probs=62.5

Q ss_pred             CCCCCCeEEEEcCCCcHHHHHHHHHHHhc-CCeEEEEeCCcccHHHHHh----cCCc---EEEeCCCCcc-ccC---C--
Q 016265          229 GFSAGKSILVLNGSGGVGSLVIQLAKQVF-GASRVAATSSTRNLEFLKS----LGAD---LAIDYTKDNF-EDL---P--  294 (392)
Q Consensus       229 ~~~~g~~VlI~Ga~G~vG~~aiqlak~~~-G~~vv~~~~~~~~~~~~~~----~G~~---~vi~~~~~~~-~~~---~--  294 (392)
                      ...++++||-+| +| .|..++.+++.+. +.+++.++.+++..+.+++    .|..   .++..+.... ...   .  
T Consensus        66 ~~~~~~~vLdiG-~G-~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~  143 (229)
T 2avd_A           66 RLIQAKKALDLG-TF-TGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEA  143 (229)
T ss_dssp             HHTTCCEEEEEC-CT-TSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCT
T ss_pred             HhcCCCEEEEEc-CC-ccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCC
Confidence            345778999997 55 7899999998632 5688899999888777754    3532   1222211111 111   1  


Q ss_pred             CCccEEEecCc------cHHHHHHhcccCCeEEEEc
Q 016265          295 EKFDVVYDAIG------QCDRAVKAIKEGGTVVALT  324 (392)
Q Consensus       295 ~~~D~vid~~G------~~~~~~~~l~~~G~iv~~g  324 (392)
                      +.||+|+-...      .++.+.++|++||.++...
T Consensus       144 ~~~D~v~~d~~~~~~~~~l~~~~~~L~pgG~lv~~~  179 (229)
T 2avd_A          144 GTFDVAVVDADKENCSAYYERCLQLLRPGGILAVLR  179 (229)
T ss_dssp             TCEEEEEECSCSTTHHHHHHHHHHHEEEEEEEEEEC
T ss_pred             CCccEEEECCCHHHHHHHHHHHHHHcCCCeEEEEEC
Confidence            57999885432      2578889999999998753

>2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens}

Probab=94.68  E-value=0.27  Score=45.73  Aligned_cols=133  Identities=14%  Similarity=0.110  Sum_probs=73.9

Q ss_pred             eEEEEcCCCcHHHHH-HHHHHHhcCCeEEEE-eCCcccHHH-HHhcCCcEEEeCCCCccccC--CCCccEEEecCc---c
Q 016265          235 SILVLNGSGGVGSLV-IQLAKQVFGASRVAA-TSSTRNLEF-LKSLGADLAIDYTKDNFEDL--PEKFDVVYDAIG---Q  306 (392)
Q Consensus       235 ~VlI~Ga~G~vG~~a-iqlak~~~G~~vv~~-~~~~~~~~~-~~~~G~~~vi~~~~~~~~~~--~~~~D~vid~~G---~  306 (392)
                      +|.|+| +|.+|... +...+. .+.+++.+ ++++++.+. ++++|...+++    ++.++  ...+|+|+.|+.   .
T Consensus         2 ~vgiiG-~G~~g~~~~~~~l~~-~~~~~vav~d~~~~~~~~~~~~~g~~~~~~----~~~~~l~~~~~D~V~i~tp~~~h   75 (332)
T 2glx_A            2 RWGLIG-ASTIAREWVIGAIRA-TGGEVVSMMSTSAERGAAYATENGIGKSVT----SVEELVGDPDVDAVYVSTTNELH   75 (332)
T ss_dssp             EEEEES-CCHHHHHTHHHHHHH-TTCEEEEEECSCHHHHHHHHHHTTCSCCBS----CHHHHHTCTTCCEEEECSCGGGH
T ss_pred             eEEEEc-ccHHHHHhhhHHhhc-CCCeEEEEECCCHHHHHHHHHHcCCCcccC----CHHHHhcCCCCCEEEEeCChhHh
Confidence            588998 89999876 544444 48887754 567666544 45677643221    23332  236999999987   2


Q ss_pred             HHHHHHhcccCCeEEEEcCCCCCCceEEEEeecHHHHHHHHHHHHCCCcccccCCCcccchhh-HHHHHHHHHhCCCCee
Q 016265          307 CDRAVKAIKEGGTVVALTGAVTPPGFRFVVTSNGEVLKKLNPYLESGKVKPIIDPKGPFPFSQ-VVEAFSYIETNKATGK  385 (392)
Q Consensus       307 ~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~l~~~~~~t~~~~l~~-~~~A~~~l~~~~~~gK  385 (392)
                      .+.+..+++. |+-|.+..+.         ....+..+++.++.++..+.....  ..+.+.. +.++.+.+.++ ..|+
T Consensus        76 ~~~~~~al~~-Gk~v~~ekP~---------~~~~~~~~~l~~~a~~~g~~~~~~--~~~r~~p~~~~~~~~i~~g-~iG~  142 (332)
T 2glx_A           76 REQTLAAIRA-GKHVLCEKPL---------AMTLEDAREMVVAAREAGVVLGTN--HHLRNAAAHRAMRDAIAEG-RIGR  142 (332)
T ss_dssp             HHHHHHHHHT-TCEEEECSSS---------CSSHHHHHHHHHHHHHHTCCEEEC--CCGGGSHHHHHHHHHHHTT-TTSS
T ss_pred             HHHHHHHHHC-CCeEEEeCCC---------cCCHHHHHHHHHHHHHcCCEEEEe--ehhhcCHHHHHHHHHHHcC-CCCC
Confidence            4667777776 4544443211         123455566666666544433322  2233332 34444444444 3455


Q ss_pred             E
Q 016265          386 V  386 (392)
Q Consensus       386 v  386 (392)
                      +
T Consensus       143 i  143 (332)
T 2glx_A          143 P  143 (332)
T ss_dssp             E
T ss_pred             e
Confidence            4

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=94.68  E-value=0.11  Score=48.46  Aligned_cols=86  Identities=16%  Similarity=0.252  Sum_probs=59.5

Q ss_pred             CCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCCccccCCCCccEEEecCcc---HHH
Q 016265          233 GKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFEDLPEKFDVVYDAIGQ---CDR  309 (392)
Q Consensus       233 g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~~~~~~~D~vid~~G~---~~~  309 (392)
                      ..+|.|+| .|.+|...++.+.. .|.+|++.++++++.+.+.+.|+...     .+..+..+..|+||.|+..   .+.
T Consensus        31 ~~~I~iIG-~G~mG~~~a~~l~~-~G~~V~~~dr~~~~~~~l~~~g~~~~-----~~~~e~~~~aDvVi~~vp~~~~~~~  103 (320)
T 4dll_A           31 ARKITFLG-TGSMGLPMARRLCE-AGYALQVWNRTPARAASLAALGATIH-----EQARAAARDADIVVSMLENGAVVQD  103 (320)
T ss_dssp             CSEEEEEC-CTTTHHHHHHHHHH-TTCEEEEECSCHHHHHHHHTTTCEEE-----SSHHHHHTTCSEEEECCSSHHHHHH
T ss_pred             CCEEEEEC-ccHHHHHHHHHHHh-CCCeEEEEcCCHHHHHHHHHCCCEee-----CCHHHHHhcCCEEEEECCCHHHHHH
Confidence            45899998 99999988877766 49999999999999888887775322     1223334567888888763   222


Q ss_pred             ------HHHhcccCCeEEEEcC
Q 016265          310 ------AVKAIKEGGTVVALTG  325 (392)
Q Consensus       310 ------~~~~l~~~G~iv~~g~  325 (392)
                            ....++++..++.++.
T Consensus       104 v~~~~~~~~~l~~~~~vi~~st  125 (320)
T 4dll_A          104 VLFAQGVAAAMKPGSLFLDMAS  125 (320)
T ss_dssp             HHTTTCHHHHCCTTCEEEECSC
T ss_pred             HHcchhHHhhCCCCCEEEecCC
Confidence                  2334566666666543

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=94.66  E-value=0.18  Score=46.04  Aligned_cols=87  Identities=21%  Similarity=0.234  Sum_probs=56.2

Q ss_pred             CeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhc-------------CCcE--------EEeCCCCcccc
Q 016265          234 KSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSL-------------GADL--------AIDYTKDNFED  292 (392)
Q Consensus       234 ~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~-------------G~~~--------vi~~~~~~~~~  292 (392)
                      .+|.|+| +|.+|...++.+.. .|.+|++.++++++++.+++.             +...        -+.. ..+..+
T Consensus         5 ~kV~VIG-aG~mG~~iA~~la~-~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~-~~~~~~   81 (283)
T 4e12_A            5 TNVTVLG-TGVLGSQIAFQTAF-HGFAVTAYDINTDALDAAKKRFEGLAAVYEKEVAGAADGAAQKALGGIRY-SDDLAQ   81 (283)
T ss_dssp             CEEEEEC-CSHHHHHHHHHHHH-TTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHSTTCTTTHHHHHHHHCEE-ESCHHH
T ss_pred             CEEEEEC-CCHHHHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHcCeEE-eCCHHH
Confidence            5799998 89999998888877 599999999998887766542             2110        0000 112233


Q ss_pred             CCCCccEEEecCcc--------HHHHHHhcccCCeEEEE
Q 016265          293 LPEKFDVVYDAIGQ--------CDRAVKAIKEGGTVVAL  323 (392)
Q Consensus       293 ~~~~~D~vid~~G~--------~~~~~~~l~~~G~iv~~  323 (392)
                      ..+++|+||+|+..        +......++++..++..
T Consensus        82 ~~~~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~il~s~  120 (283)
T 4e12_A           82 AVKDADLVIEAVPESLDLKRDIYTKLGELAPAKTIFATN  120 (283)
T ss_dssp             HTTTCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEEC
T ss_pred             HhccCCEEEEeccCcHHHHHHHHHHHHhhCCCCcEEEEC
Confidence            34578999999872        23444456665555543

>3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori}

Probab=94.65  E-value=0.033  Score=52.58  Aligned_cols=72  Identities=22%  Similarity=0.276  Sum_probs=46.2

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHH--hcCCeEEEEeCCcccH-------------HHHHhcCCcEEE--eCCCC-ccccC
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQ--VFGASRVAATSSTRNL-------------EFLKSLGADLAI--DYTKD-NFEDL  293 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~--~~G~~vv~~~~~~~~~-------------~~~~~~G~~~vi--~~~~~-~~~~~  293 (392)
                      .+.+|||+||+|.+|...+..+..  . |.+|++++++....             ......+. .++  |..+. .+.+.
T Consensus         9 ~~~~vlVTGatG~IG~~l~~~L~~~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Dl~d~~~~~~~   86 (362)
T 3sxp_A            9 ENQTILITGGAGFVGSNLAFHFQENHP-KAKVVVLDKFRSNTLFSNNRPSSLGHFKNLIGFKG-EVIAADINNPLDLRRL   86 (362)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHHCT-TSEEEEEECCCCC-------CCCCCCGGGGTTCCS-EEEECCTTCHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhhCC-CCeEEEEECCCccccccccchhhhhhhhhccccCc-eEEECCCCCHHHHHHh
Confidence            468999999999999998877765  4 89999998754411             11111122 222  32222 23333


Q ss_pred             -CCCccEEEecCc
Q 016265          294 -PEKFDVVYDAIG  305 (392)
Q Consensus       294 -~~~~D~vid~~G  305 (392)
                       ..++|+||++.|
T Consensus        87 ~~~~~D~vih~A~   99 (362)
T 3sxp_A           87 EKLHFDYLFHQAA   99 (362)
T ss_dssp             TTSCCSEEEECCC
T ss_pred             hccCCCEEEECCc
Confidence             568999999976

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=94.64  E-value=0.16  Score=43.91  Aligned_cols=90  Identities=16%  Similarity=0.107  Sum_probs=61.1

Q ss_pred             CCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCC--cEEEeCCCCccccCCCCccEEEecCc-
Q 016265          229 GFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGA--DLAIDYTKDNFEDLPEKFDVVYDAIG-  305 (392)
Q Consensus       229 ~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~--~~vi~~~~~~~~~~~~~~D~vid~~G-  305 (392)
                      ...++.+||=+| +| .|..+..+++.  +.+++.++.++..++.+++.-.  -.++..+-..+... +.+|+|+.... 
T Consensus        42 ~~~~~~~vLDiG-cG-~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~d~~~~~~~-~~fD~v~~~~~l  116 (220)
T 3hnr_A           42 VNKSFGNVLEFG-VG-TGNLTNKLLLA--GRTVYGIEPSREMRMIAKEKLPKEFSITEGDFLSFEVP-TSIDTIVSTYAF  116 (220)
T ss_dssp             HHTCCSEEEEEC-CT-TSHHHHHHHHT--TCEEEEECSCHHHHHHHHHHSCTTCCEESCCSSSCCCC-SCCSEEEEESCG
T ss_pred             hccCCCeEEEeC-CC-CCHHHHHHHhC--CCeEEEEeCCHHHHHHHHHhCCCceEEEeCChhhcCCC-CCeEEEEECcch
Confidence            345889999997 44 48888888874  8899999999988888876422  11222221222112 67999986532 


Q ss_pred             ----------cHHHHHHhcccCCeEEEE
Q 016265          306 ----------QCDRAVKAIKEGGTVVAL  323 (392)
Q Consensus       306 ----------~~~~~~~~l~~~G~iv~~  323 (392)
                                .+..+.++|+|||+++..
T Consensus       117 ~~~~~~~~~~~l~~~~~~LkpgG~l~i~  144 (220)
T 3hnr_A          117 HHLTDDEKNVAIAKYSQLLNKGGKIVFA  144 (220)
T ss_dssp             GGSCHHHHHHHHHHHHHHSCTTCEEEEE
T ss_pred             hcCChHHHHHHHHHHHHhcCCCCEEEEE
Confidence                      136778899999998865

>3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A*

Probab=94.63  E-value=0.018  Score=52.00  Aligned_cols=68  Identities=15%  Similarity=0.147  Sum_probs=45.8

Q ss_pred             CCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEE--eCCC-CccccCCCCccEEEecCc
Q 016265          233 GKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAI--DYTK-DNFEDLPEKFDVVYDAIG  305 (392)
Q Consensus       233 g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi--~~~~-~~~~~~~~~~D~vid~~G  305 (392)
                      +++|||+||+|++|...++.+.. .|.+|+++++++.+.+   ..+. .++  |..+ +.+.+..+++|+||++.|
T Consensus         3 ~k~vlVTGasg~IG~~la~~L~~-~G~~V~~~~r~~~~~~---~~~~-~~~~~Dl~d~~~~~~~~~~~D~vi~~Ag   73 (267)
T 3rft_A            3 MKRLLVTGAAGQLGRVMRERLAP-MAEILRLADLSPLDPA---GPNE-ECVQCDLADANAVNAMVAGCDGIVHLGG   73 (267)
T ss_dssp             EEEEEEESTTSHHHHHHHHHTGG-GEEEEEEEESSCCCCC---CTTE-EEEECCTTCHHHHHHHHTTCSEEEECCS
T ss_pred             CCEEEEECCCCHHHHHHHHHHHh-cCCEEEEEecCCcccc---CCCC-EEEEcCCCCHHHHHHHHcCCCEEEECCC
Confidence            46899999999999988877766 4899999988765543   1111 222  2222 122333458999999976

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=94.59  E-value=0.094  Score=46.87  Aligned_cols=92  Identities=14%  Similarity=0.157  Sum_probs=61.5

Q ss_pred             CCCCCeEEEEcCCCcHHHHHHHHHHHhc-CCeEEEEeCCcccHHHHHh----cCCcE---EEeCCCCcc-ccC------C
Q 016265          230 FSAGKSILVLNGSGGVGSLVIQLAKQVF-GASRVAATSSTRNLEFLKS----LGADL---AIDYTKDNF-EDL------P  294 (392)
Q Consensus       230 ~~~g~~VlI~Ga~G~vG~~aiqlak~~~-G~~vv~~~~~~~~~~~~~~----~G~~~---vi~~~~~~~-~~~------~  294 (392)
                      ..++++||-+|  ++.|..++.+|+.+. +.+++.++.+++..+.+++    .|.+.   ++..+.... ...      .
T Consensus        77 ~~~~~~VLeiG--~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~  154 (247)
T 1sui_A           77 LINAKNTMEIG--VYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNH  154 (247)
T ss_dssp             HTTCCEEEEEC--CGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGT
T ss_pred             hhCcCEEEEeC--CCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCC
Confidence            34667999997  456888899998742 5789999999888777654    45422   222221111 112      3


Q ss_pred             CCccEEEecCc------cHHHHHHhcccCCeEEEE
Q 016265          295 EKFDVVYDAIG------QCDRAVKAIKEGGTVVAL  323 (392)
Q Consensus       295 ~~~D~vid~~G------~~~~~~~~l~~~G~iv~~  323 (392)
                      +.||+||-...      .++.+.++|++||.++.-
T Consensus       155 ~~fD~V~~d~~~~~~~~~l~~~~~~LkpGG~lv~d  189 (247)
T 1sui_A          155 GSYDFIFVDADKDNYLNYHKRLIDLVKVGGVIGYD  189 (247)
T ss_dssp             TCBSEEEECSCSTTHHHHHHHHHHHBCTTCCEEEE
T ss_pred             CCEEEEEEcCchHHHHHHHHHHHHhCCCCeEEEEe
Confidence            57999985432      257888999999999864

>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2

Probab=94.58  E-value=0.1  Score=47.55  Aligned_cols=95  Identities=23%  Similarity=0.181  Sum_probs=62.6

Q ss_pred             ccchhHHHHHHHHHhcCC-CCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCCccc
Q 016265          213 GLPLAIETAYEGLERTGF-SAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFE  291 (392)
Q Consensus       213 ~l~~~~~ta~~al~~~~~-~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~  291 (392)
                      .+||........|++... -.|.+|+|+|++..+|.-+++++.. .|++|.++.+....++.                  
T Consensus       138 ~~PcTp~gi~~ll~~~~i~l~gk~vvVIG~s~iVG~p~A~lL~~-~gAtVtv~hs~t~~L~~------------------  198 (288)
T 1b0a_A          138 LRPCTPRGIVTLLERYNIDTFGLNAVVIGASNIVGRPMSMELLL-AGCTTTVTHRFTKNLRH------------------  198 (288)
T ss_dssp             SCCHHHHHHHHHHHHTTCCCTTCEEEEECCCTTTHHHHHHHHHT-TTCEEEEECSSCSCHHH------------------
T ss_pred             CCCCcHHHHHHHHHHcCCCCCCCEEEEECCChHHHHHHHHHHHH-CCCeEEEEeCCchhHHH------------------
Confidence            345555445555665543 4789999999665789999999988 49998888654433322                  


Q ss_pred             cCCCCccEEEecCccHH-HHHHhcccCCeEEEEcCCC
Q 016265          292 DLPEKFDVVYDAIGQCD-RAVKAIKEGGTVVALTGAV  327 (392)
Q Consensus       292 ~~~~~~D~vid~~G~~~-~~~~~l~~~G~iv~~g~~~  327 (392)
                       ..+.+|+||.++|... ---+.+++|..++.+|...
T Consensus       199 -~~~~ADIVI~Avg~p~lI~~~~vk~GavVIDVgi~r  234 (288)
T 1b0a_A          199 -HVENADLLIVAVGKPGFIPGDWIKEGAIVIDVGINR  234 (288)
T ss_dssp             -HHHHCSEEEECSCCTTCBCTTTSCTTCEEEECCCEE
T ss_pred             -HhccCCEEEECCCCcCcCCHHHcCCCcEEEEccCCc
Confidence             2234688888887421 1112468888888887643

>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*

Probab=94.57  E-value=0.06  Score=48.61  Aligned_cols=84  Identities=20%  Similarity=0.253  Sum_probs=58.9

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHH-HHHhcCCcEEEeCCCCccccCCCCccEEEecCccH--H
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLE-FLKSLGADLAIDYTKDNFEDLPEKFDVVYDAIGQC--D  308 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~-~~~~~G~~~vi~~~~~~~~~~~~~~D~vid~~G~~--~  308 (392)
                      .| +|+|+| +|.+|.+.+..+.. .|+++++..++.++.+ +++++|..  +    .+..+. +.+|+|+.|++.-  .
T Consensus       116 ~~-~v~iiG-~G~~g~~~a~~l~~-~g~~v~v~~r~~~~~~~l~~~~~~~--~----~~~~~~-~~~Divi~~tp~~~~~  185 (263)
T 2d5c_A          116 KG-PALVLG-AGGAGRAVAFALRE-AGLEVWVWNRTPQRALALAEEFGLR--A----VPLEKA-REARLLVNATRVGLED  185 (263)
T ss_dssp             CS-CEEEEC-CSHHHHHHHHHHHH-TTCCEEEECSSHHHHHHHHHHHTCE--E----CCGGGG-GGCSEEEECSSTTTTC
T ss_pred             CC-eEEEEC-CcHHHHHHHHHHHH-CCCEEEEEECCHHHHHHHHHHhccc--h----hhHhhc-cCCCEEEEccCCCCCC
Confidence            56 999998 89999999888877 4888888888877754 44566763  2    134445 6899999998721  1


Q ss_pred             ---HH--HHhcccCCeEEEEcC
Q 016265          309 ---RA--VKAIKEGGTVVALTG  325 (392)
Q Consensus       309 ---~~--~~~l~~~G~iv~~g~  325 (392)
                         ..  ...++++..++.++.
T Consensus       186 ~~~~~l~~~~l~~g~~viD~~~  207 (263)
T 2d5c_A          186 PSASPLPAELFPEEGAAVDLVY  207 (263)
T ss_dssp             TTCCSSCGGGSCSSSEEEESCC
T ss_pred             CCCCCCCHHHcCCCCEEEEeec
Confidence               11  356777777766653

>2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis}

Probab=94.56  E-value=0.11  Score=52.94  Aligned_cols=73  Identities=18%  Similarity=0.272  Sum_probs=46.8

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCc-cc-HHHHHhcCCcEEEeCCCC--cccc-------CCCCccEE
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSST-RN-LEFLKSLGADLAIDYTKD--NFED-------LPEKFDVV  300 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~-~~-~~~~~~~G~~~vi~~~~~--~~~~-------~~~~~D~v  300 (392)
                      .|++++|+||++++|.+.++.+.. .|++|++.+... ++ .+.+++.|...+....+.  +..+       .-+++|++
T Consensus       321 ~gkvalVTGas~GIG~a~A~~la~-~Ga~Vv~~~~~~~~~~~~~i~~~g~~~~~~~~Dv~~~~~~~~~~~~~~~G~iDiL  399 (604)
T 2et6_A          321 KDKVVLITGAGAGLGKEYAKWFAK-YGAKVVVNDFKDATKTVDEIKAAGGEAWPDQHDVAKDSEAIIKNVIDKYGTIDIL  399 (604)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHH-TTCEEEEECSSCCHHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHHHHHSCCCEE
T ss_pred             CCCeEEEECcchHHHHHHHHHHHH-CCCEEEEEeCccHHHHHHHHHhcCCeEEEEEcChHHHHHHHHHHHHHhcCCCCEE
Confidence            478899999999999998777666 499998886422 22 234455565433332221  1111       12468999


Q ss_pred             EecCc
Q 016265          301 YDAIG  305 (392)
Q Consensus       301 id~~G  305 (392)
                      |++.|
T Consensus       400 VnNAG  404 (604)
T 2et6_A          400 VNNAG  404 (604)
T ss_dssp             EECCC
T ss_pred             EECCC
Confidence            99977

>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ...

Probab=94.56  E-value=0.044  Score=50.02  Aligned_cols=42  Identities=26%  Similarity=0.401  Sum_probs=35.3

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHH
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFL  274 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~  274 (392)
                      .|.+|+|+||+|++|...++.+.. .|++|+++++++++++.+
T Consensus        27 ~~k~vlITGasggIG~~la~~l~~-~G~~V~~~~r~~~~~~~~   68 (286)
T 1xu9_A           27 QGKKVIVTGASKGIGREMAYHLAK-MGAHVVVTARSKETLQKV   68 (286)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHH-CCCEEEEEECCHHHHHHH
Confidence            478999999999999998887766 499999999988776544

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=94.55  E-value=0.86  Score=36.96  Aligned_cols=89  Identities=11%  Similarity=0.068  Sum_probs=56.5

Q ss_pred             CCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCC-cccHHHHH---hcCCcEEE-eCCCCc-ccc-CCCCccEEEecCc
Q 016265          233 GKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSS-TRNLEFLK---SLGADLAI-DYTKDN-FED-LPEKFDVVYDAIG  305 (392)
Q Consensus       233 g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~-~~~~~~~~---~~G~~~vi-~~~~~~-~~~-~~~~~D~vid~~G  305 (392)
                      .++|+|.| +|.+|...++.+.. .|.++++++++ +++.+.++   ..|...+. |..+.. +.+ ..+++|+|+-+++
T Consensus         3 ~~~vlI~G-~G~vG~~la~~L~~-~g~~V~vid~~~~~~~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~   80 (153)
T 1id1_A            3 KDHFIVCG-HSILAINTILQLNQ-RGQNVTVISNLPEDDIKQLEQRLGDNADVIPGDSNDSSVLKKAGIDRCRAILALSD   80 (153)
T ss_dssp             CSCEEEEC-CSHHHHHHHHHHHH-TTCCEEEEECCCHHHHHHHHHHHCTTCEEEESCTTSHHHHHHHTTTTCSEEEECSS
T ss_pred             CCcEEEEC-CCHHHHHHHHHHHH-CCCCEEEEECCChHHHHHHHHhhcCCCeEEEcCCCCHHHHHHcChhhCCEEEEecC
Confidence            46799998 79999999988877 49999999986 45554443   23443332 222222 222 2468999999988


Q ss_pred             cH------HHHHHhcccCCeEEEE
Q 016265          306 QC------DRAVKAIKEGGTVVAL  323 (392)
Q Consensus       306 ~~------~~~~~~l~~~G~iv~~  323 (392)
                      .-      ....+.+.+..+++..
T Consensus        81 ~d~~n~~~~~~a~~~~~~~~ii~~  104 (153)
T 1id1_A           81 NDADNAFVVLSAKDMSSDVKTVLA  104 (153)
T ss_dssp             CHHHHHHHHHHHHHHTSSSCEEEE
T ss_pred             ChHHHHHHHHHHHHHCCCCEEEEE
Confidence            32      2333444455566654

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*

Probab=94.53  E-value=0.16  Score=42.91  Aligned_cols=93  Identities=14%  Similarity=0.155  Sum_probs=61.8

Q ss_pred             hcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHh----cCC-c-EEEeCCCCccccCCCCccEE
Q 016265          227 RTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKS----LGA-D-LAIDYTKDNFEDLPEKFDVV  300 (392)
Q Consensus       227 ~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~----~G~-~-~vi~~~~~~~~~~~~~~D~v  300 (392)
                      .....++++||-+| +| .|..+..+++.  |.+++.++.++..++.+++    .+. . .++..+-.... ..+.+|+|
T Consensus        27 ~~~~~~~~~vLdiG-~G-~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~-~~~~~D~v  101 (199)
T 2xvm_A           27 AVKVVKPGKTLDLG-CG-NGRNSLYLAAN--GYDVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLT-FDRQYDFI  101 (199)
T ss_dssp             HTTTSCSCEEEEET-CT-TSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGGGCC-CCCCEEEE
T ss_pred             HhhccCCCeEEEEc-CC-CCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchhhCC-CCCCceEE
Confidence            34556788999997 54 58888888874  8899999999887777654    232 1 22222211111 14579999


Q ss_pred             EecCc-----------cHHHHHHhcccCCeEEEEc
Q 016265          301 YDAIG-----------QCDRAVKAIKEGGTVVALT  324 (392)
Q Consensus       301 id~~G-----------~~~~~~~~l~~~G~iv~~g  324 (392)
                      +...-           .+..+.+.|++||+++.+.
T Consensus       102 ~~~~~l~~~~~~~~~~~l~~~~~~L~~gG~l~~~~  136 (199)
T 2xvm_A          102 LSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVA  136 (199)
T ss_dssp             EEESCGGGSCGGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             EEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEE
Confidence            86521           1467788999999987664

>2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A

Probab=94.53  E-value=0.067  Score=48.65  Aligned_cols=93  Identities=22%  Similarity=0.282  Sum_probs=60.4

Q ss_pred             cchhHHHHHHHHHhcC-CCCCCeEEEEcCCCcHHHHHHHHHHHhc--CCeEEEEeCCcccHHHHHhcCCcEEEeCCCCcc
Q 016265          214 LPLAIETAYEGLERTG-FSAGKSILVLNGSGGVGSLVIQLAKQVF--GASRVAATSSTRNLEFLKSLGADLAIDYTKDNF  290 (392)
Q Consensus       214 l~~~~~ta~~al~~~~-~~~g~~VlI~Ga~G~vG~~aiqlak~~~--G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~  290 (392)
                      +||....+...+++.+ --.|.+++|+|++..+|..+++++.. .  |++|.++.+....                   .
T Consensus       138 ~PcTp~gi~~ll~~~~i~l~gk~vvVvG~s~iVG~p~A~lL~~-~g~~atVtv~h~~t~~-------------------L  197 (281)
T 2c2x_A          138 LPCTPRGIVHLLRRYDISIAGAHVVVIGRGVTVGRPLGLLLTR-RSENATVTLCHTGTRD-------------------L  197 (281)
T ss_dssp             CCHHHHHHHHHHHHTTCCCTTCEEEEECCCTTTHHHHHHHHTS-TTTCCEEEEECTTCSC-------------------H
T ss_pred             CCChHHHHHHHHHHcCCCCCCCEEEEECCCcHHHHHHHHHHhc-CCCCCEEEEEECchhH-------------------H
Confidence            4555444555555555 34789999999555689999998877 5  7887777544322                   2


Q ss_pred             ccCCCCccEEEecCccHH-HHHHhcccCCeEEEEcCC
Q 016265          291 EDLPEKFDVVYDAIGQCD-RAVKAIKEGGTVVALTGA  326 (392)
Q Consensus       291 ~~~~~~~D~vid~~G~~~-~~~~~l~~~G~iv~~g~~  326 (392)
                      .+..+.+|+||.++|... ---+.+++|..++.+|..
T Consensus       198 ~~~~~~ADIVI~Avg~p~~I~~~~vk~GavVIDVgi~  234 (281)
T 2c2x_A          198 PALTRQADIVVAAVGVAHLLTADMVRPGAAVIDVGVS  234 (281)
T ss_dssp             HHHHTTCSEEEECSCCTTCBCGGGSCTTCEEEECCEE
T ss_pred             HHHHhhCCEEEECCCCCcccCHHHcCCCcEEEEccCC
Confidence            333346788998888421 112346888888877654

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=94.52  E-value=0.11  Score=50.03  Aligned_cols=99  Identities=16%  Similarity=0.271  Sum_probs=63.9

Q ss_pred             HHHHHhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCe-EEEEeCCcccHHHHH-----------hcCC--cE--EEeC
Q 016265          222 YEGLERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGAS-RVAATSSTRNLEFLK-----------SLGA--DL--AIDY  285 (392)
Q Consensus       222 ~~al~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~-vv~~~~~~~~~~~~~-----------~~G~--~~--vi~~  285 (392)
                      ...+....+++|++||=+|  .|.|.+++++|+. .|+. ++.++.++.-.+.++           .+|.  +.  ++..
T Consensus       163 ~~il~~l~l~~gd~VLDLG--CGtG~l~l~lA~~-~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~G  239 (438)
T 3uwp_A          163 AQMIDEIKMTDDDLFVDLG--SGVGQVVLQVAAA-TNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERG  239 (438)
T ss_dssp             HHHHHHHCCCTTCEEEEES--CTTSHHHHHHHHH-CCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEEC
T ss_pred             HHHHHhcCCCCCCEEEEeC--CCCCHHHHHHHHH-CCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEEC
Confidence            3345678899999999887  4569999999987 5885 888888876444443           2343  22  1221


Q ss_pred             C--CCccccCCCCccEEEec-C--c-----cHHHHHHhcccCCeEEEE
Q 016265          286 T--KDNFEDLPEKFDVVYDA-I--G-----QCDRAVKAIKEGGTVVAL  323 (392)
Q Consensus       286 ~--~~~~~~~~~~~D~vid~-~--G-----~~~~~~~~l~~~G~iv~~  323 (392)
                      +  +..+.+....+|+||-. .  .     .+...++.|+|||+||..
T Consensus       240 D~~~lp~~d~~~~aDVVf~Nn~~F~pdl~~aL~Ei~RvLKPGGrIVss  287 (438)
T 3uwp_A          240 DFLSEEWRERIANTSVIFVNNFAFGPEVDHQLKERFANMKEGGRIVSS  287 (438)
T ss_dssp             CTTSHHHHHHHHTCSEEEECCTTCCHHHHHHHHHHHTTSCTTCEEEES
T ss_pred             cccCCccccccCCccEEEEcccccCchHHHHHHHHHHcCCCCcEEEEe
Confidence            1  11121111368999842 1  1     246678899999999976

>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*

Probab=94.51  E-value=0.04  Score=51.51  Aligned_cols=69  Identities=16%  Similarity=0.134  Sum_probs=45.2

Q ss_pred             CCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEE-EeCCCC-ccccCCCCccEEEecCc
Q 016265          230 FSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLA-IDYTKD-NFEDLPEKFDVVYDAIG  305 (392)
Q Consensus       230 ~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~v-i~~~~~-~~~~~~~~~D~vid~~G  305 (392)
                      -..+.+|||+||+|.+|...++.+.. .|.+|++++++..+      .+...+ .|..+. .+.+...++|+||.+.+
T Consensus        16 ~~~~~~vlVtGatG~iG~~l~~~L~~-~G~~V~~~~r~~~~------~~~~~~~~Dl~d~~~~~~~~~~~d~vih~A~   86 (347)
T 4id9_A           16 PRGSHMILVTGSAGRVGRAVVAALRT-QGRTVRGFDLRPSG------TGGEEVVGSLEDGQALSDAIMGVSAVLHLGA   86 (347)
T ss_dssp             -----CEEEETTTSHHHHHHHHHHHH-TTCCEEEEESSCCS------SCCSEEESCTTCHHHHHHHHTTCSEEEECCC
T ss_pred             ccCCCEEEEECCCChHHHHHHHHHHh-CCCEEEEEeCCCCC------CCccEEecCcCCHHHHHHHHhCCCEEEECCc
Confidence            34678899999999999999988877 49999999987655      233322 233222 22333458999998865

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}

Probab=94.50  E-value=0.21  Score=49.22  Aligned_cols=93  Identities=24%  Similarity=0.340  Sum_probs=61.2

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHHHHhc-CCeEEEEeCCcccHHHHH----hcCCcE--EEeCCCCcccc-CCCCccEEEe
Q 016265          231 SAGKSILVLNGSGGVGSLVIQLAKQVF-GASRVAATSSTRNLEFLK----SLGADL--AIDYTKDNFED-LPEKFDVVYD  302 (392)
Q Consensus       231 ~~g~~VlI~Ga~G~vG~~aiqlak~~~-G~~vv~~~~~~~~~~~~~----~~G~~~--vi~~~~~~~~~-~~~~~D~vid  302 (392)
                      ++|++||=.| +| .|..++++|+.+. +..+++++.++.+++.++    ++|...  ++..+...+.. ..+.||+|+-
T Consensus       116 ~~g~~VLDl~-aG-pG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~nv~~~~~D~~~~~~~~~~~fD~Il~  193 (479)
T 2frx_A          116 NAPQRVMDVA-AA-PGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAILL  193 (479)
T ss_dssp             CCCSEEEESS-CT-TSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCCSTTHHHHSTTCEEEEEE
T ss_pred             CCCCEEEEeC-CC-CCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCCHHHhhhhccccCCEEEE
Confidence            3899998876 43 4667777887642 368889999999887764    356542  33333333332 3457999985


Q ss_pred             ---cCc--c--------------------------HHHHHHhcccCCeEEEEcC
Q 016265          303 ---AIG--Q--------------------------CDRAVKAIKEGGTVVALTG  325 (392)
Q Consensus       303 ---~~G--~--------------------------~~~~~~~l~~~G~iv~~g~  325 (392)
                         |+|  .                          +..++++|++||+++....
T Consensus       194 D~PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTc  247 (479)
T 2frx_A          194 DAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTC  247 (479)
T ss_dssp             ECCCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEES
T ss_pred             CCCcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEecc
Confidence               544  1                          2456789999999987543

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=94.48  E-value=0.23  Score=41.55  Aligned_cols=95  Identities=18%  Similarity=0.212  Sum_probs=63.6

Q ss_pred             HHhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhc----CCc----EEEeCCCCccccCCCC
Q 016265          225 LERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSL----GAD----LAIDYTKDNFEDLPEK  296 (392)
Q Consensus       225 l~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~----G~~----~vi~~~~~~~~~~~~~  296 (392)
                      ++....+++++||-+| +| .|..+..+++.  +.+++.++.++...+.+++.    |..    .++..+-.... ..+.
T Consensus        45 ~~~~~~~~~~~vLdiG-~G-~G~~~~~~~~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~  119 (194)
T 1dus_A           45 VENVVVDKDDDILDLG-CG-YGVIGIALADE--VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENV-KDRK  119 (194)
T ss_dssp             HHHCCCCTTCEEEEET-CT-TSHHHHHHGGG--SSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTC-TTSC
T ss_pred             HHHcccCCCCeEEEeC-CC-CCHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhccc-ccCC
Confidence            4556677899999997 54 58888888874  78999999998887776542    432    22222211111 1347


Q ss_pred             ccEEEecCc----------cHHHHHHhcccCCeEEEEc
Q 016265          297 FDVVYDAIG----------QCDRAVKAIKEGGTVVALT  324 (392)
Q Consensus       297 ~D~vid~~G----------~~~~~~~~l~~~G~iv~~g  324 (392)
                      +|+|+-...          .++.+.++|++||+++...
T Consensus       120 ~D~v~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~  157 (194)
T 1dus_A          120 YNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIWVVI  157 (194)
T ss_dssp             EEEEEECCCSTTCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ceEEEECCCcccchhHHHHHHHHHHHHcCCCCEEEEEE
Confidence            999986532          1367778899999987663

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A

Probab=94.47  E-value=0.24  Score=48.05  Aligned_cols=97  Identities=21%  Similarity=0.163  Sum_probs=64.5

Q ss_pred             hcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHh----cCCc-EEEeCCCCcccc-C-CCCccE
Q 016265          227 RTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKS----LGAD-LAIDYTKDNFED-L-PEKFDV  299 (392)
Q Consensus       227 ~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~----~G~~-~vi~~~~~~~~~-~-~~~~D~  299 (392)
                      ....++|++||=.| +|+ |..+.++++...+.++++++.++.+++.+++    +|.. .++..+...... . .+.||+
T Consensus       241 ~l~~~~g~~VLDlg-aG~-G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~~~~~~~~D~~~~~~~~~~~~fD~  318 (429)
T 1sqg_A          241 WLAPQNGEHILDLC-AAP-GGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFDR  318 (429)
T ss_dssp             HHCCCTTCEEEEES-CTT-CHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHTTCCEEE
T ss_pred             HcCCCCcCeEEEEC-CCc-hHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCCCeEEEeCchhhchhhcccCCCCE
Confidence            34678999999987 555 7778888887423689999999998887743    4643 233322222221 1 246999


Q ss_pred             EEe---cCc--c--------------------------HHHHHHhcccCCeEEEEcC
Q 016265          300 VYD---AIG--Q--------------------------CDRAVKAIKEGGTVVALTG  325 (392)
Q Consensus       300 vid---~~G--~--------------------------~~~~~~~l~~~G~iv~~g~  325 (392)
                      |+-   |+|  .                          ++.++++|++||+++....
T Consensus       319 Vl~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystc  375 (429)
T 1sqg_A          319 ILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATC  375 (429)
T ss_dssp             EEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEES
T ss_pred             EEEeCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence            985   443  1                          3567778999999987543

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=94.45  E-value=0.091  Score=45.24  Aligned_cols=90  Identities=20%  Similarity=0.204  Sum_probs=62.3

Q ss_pred             CCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhc-CCcEEEeCCCCccccCCCCccEEEecCc--
Q 016265          229 GFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSL-GADLAIDYTKDNFEDLPEKFDVVYDAIG--  305 (392)
Q Consensus       229 ~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~-G~~~vi~~~~~~~~~~~~~~D~vid~~G--  305 (392)
                      .+.++.+||=+| + |.|..+..+++.  |.+++.++.++.-++.+++. +.... ..+-.... ..+.||+|+....  
T Consensus        40 ~~~~~~~vLDiG-c-G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~-~~d~~~~~-~~~~fD~v~~~~~l~  113 (211)
T 3e23_A           40 ELPAGAKILELG-C-GAGYQAEAMLAA--GFDVDATDGSPELAAEASRRLGRPVR-TMLFHQLD-AIDAYDAVWAHACLL  113 (211)
T ss_dssp             TSCTTCEEEESS-C-TTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHTSCCE-ECCGGGCC-CCSCEEEEEECSCGG
T ss_pred             hcCCCCcEEEEC-C-CCCHHHHHHHHc--CCeEEEECCCHHHHHHHHHhcCCceE-EeeeccCC-CCCcEEEEEecCchh
Confidence            467889999987 4 458888888874  88999999999888888654 43322 11111112 3457999996532  


Q ss_pred             ---------cHHHHHHhcccCCeEEEEc
Q 016265          306 ---------QCDRAVKAIKEGGTVVALT  324 (392)
Q Consensus       306 ---------~~~~~~~~l~~~G~iv~~g  324 (392)
                               .+..+.+.|++||+++...
T Consensus       114 ~~~~~~~~~~l~~~~~~LkpgG~l~~~~  141 (211)
T 3e23_A          114 HVPRDELADVLKLIWRALKPGGLFYASY  141 (211)
T ss_dssp             GSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             hcCHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence                     1467888999999988763

>3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase, oxidoreductase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=94.44  E-value=0.078  Score=47.84  Aligned_cols=74  Identities=22%  Similarity=0.311  Sum_probs=45.8

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEe-CCcccHHHH----HhcCCc-EEE--eCCCCc-cccC-------C
Q 016265          231 SAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAAT-SSTRNLEFL----KSLGAD-LAI--DYTKDN-FEDL-------P  294 (392)
Q Consensus       231 ~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~-~~~~~~~~~----~~~G~~-~vi--~~~~~~-~~~~-------~  294 (392)
                      ..+.+++|+||+|++|...++.+.. .|++|+++. ++.++.+..    ++.|.. .++  |..+.. ..+.       .
T Consensus        23 ~~~k~vlITGas~gIG~~~a~~l~~-~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~  101 (269)
T 3gk3_A           23 QAKRVAFVTGGMGGLGAAISRRLHD-AGMAVAVSHSERNDHVSTWLMHERDAGRDFKAYAVDVADFESCERCAEKVLADF  101 (269)
T ss_dssp             -CCCEEEETTTTSHHHHHHHHHHHT-TTCEEEEEECSCHHHHHHHHHHHHTTTCCCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             hcCCEEEEECCCchHHHHHHHHHHH-CCCEEEEEcCCchHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHc
Confidence            3578999999999999987776655 499999887 444443322    233432 222  332211 1111       2


Q ss_pred             CCccEEEecCc
Q 016265          295 EKFDVVYDAIG  305 (392)
Q Consensus       295 ~~~D~vid~~G  305 (392)
                      +++|++|++.|
T Consensus       102 g~id~li~nAg  112 (269)
T 3gk3_A          102 GKVDVLINNAG  112 (269)
T ss_dssp             SCCSEEEECCC
T ss_pred             CCCCEEEECCC
Confidence            37899999876

>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum}

Probab=94.44  E-value=0.028  Score=51.70  Aligned_cols=82  Identities=29%  Similarity=0.378  Sum_probs=58.9

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCCccccCCCCccEEEecCcc-----
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFEDLPEKFDVVYDAIGQ-----  306 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~~~~~~~D~vid~~G~-----  306 (392)
                      .|.+|.|+| .|.+|...++.++. +|.+|++.+++.++.+.     . .    ...++.+..+..|+|+-++..     
T Consensus       121 ~g~tvGIIG-lG~IG~~vA~~l~~-~G~~V~~~dr~~~~~~~-----~-~----~~~~l~ell~~aDiV~l~~P~t~~t~  188 (290)
T 3gvx_A          121 YGKALGILG-YGGIGRRVAHLAKA-FGMRVIAYTRSSVDQNV-----D-V----ISESPADLFRQSDFVLIAIPLTDKTR  188 (290)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHH-HTCEEEEECSSCCCTTC-----S-E----ECSSHHHHHHHCSEEEECCCCCTTTT
T ss_pred             ecchheeec-cCchhHHHHHHHHh-hCcEEEEEecccccccc-----c-c----ccCChHHHhhccCeEEEEeeccccch
Confidence            478999998 99999999999998 59999999887654321     1 1    011233334467888887651     


Q ss_pred             --H-HHHHHhcccCCeEEEEcC
Q 016265          307 --C-DRAVKAIKEGGTVVALTG  325 (392)
Q Consensus       307 --~-~~~~~~l~~~G~iv~~g~  325 (392)
                        + ...++.|+++..++.++.
T Consensus       189 ~li~~~~l~~mk~gailIN~aR  210 (290)
T 3gvx_A          189 GMVNSRLLANARKNLTIVNVAR  210 (290)
T ss_dssp             TCBSHHHHTTCCTTCEEEECSC
T ss_pred             hhhhHHHHhhhhcCceEEEeeh
Confidence              2 567888999988887753

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=94.41  E-value=0.17  Score=42.38  Aligned_cols=90  Identities=18%  Similarity=0.114  Sum_probs=61.5

Q ss_pred             CCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCc-EEEeCCCCccccCCCCccEEEecCc---
Q 016265          230 FSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGAD-LAIDYTKDNFEDLPEKFDVVYDAIG---  305 (392)
Q Consensus       230 ~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~-~vi~~~~~~~~~~~~~~D~vid~~G---  305 (392)
                      +.++.+||-+| +| .|..+..+++.  +.+++.++.++...+.+++.... .++..+-.......+.+|+|+....   
T Consensus        44 ~~~~~~vLdiG-~G-~G~~~~~l~~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~~~~~  119 (195)
T 3cgg_A           44 APRGAKILDAG-CG-QGRIGGYLSKQ--GHDVLGTDLDPILIDYAKQDFPEARWVVGDLSVDQISETDFDLIVSAGNVMG  119 (195)
T ss_dssp             SCTTCEEEEET-CT-TTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHCTTSEEEECCTTTSCCCCCCEEEEEECCCCGG
T ss_pred             ccCCCeEEEEC-CC-CCHHHHHHHHC--CCcEEEEcCCHHHHHHHHHhCCCCcEEEcccccCCCCCCceeEEEECCcHHh
Confidence            57889999997 54 58888888874  78999999999888888765322 2232222221111357999996511   


Q ss_pred             ---------cHHHHHHhcccCCeEEEE
Q 016265          306 ---------QCDRAVKAIKEGGTVVAL  323 (392)
Q Consensus       306 ---------~~~~~~~~l~~~G~iv~~  323 (392)
                               .+..+.+.|+++|+++..
T Consensus       120 ~~~~~~~~~~l~~~~~~l~~~G~l~~~  146 (195)
T 3cgg_A          120 FLAEDGREPALANIHRALGADGRAVIG  146 (195)
T ss_dssp             GSCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             hcChHHHHHHHHHHHHHhCCCCEEEEE
Confidence                     136777889999998765

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=94.38  E-value=0.15  Score=46.16  Aligned_cols=92  Identities=23%  Similarity=0.259  Sum_probs=63.5

Q ss_pred             HhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcC--CcEEEeCCCCccccCCCCccEEEec
Q 016265          226 ERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLG--ADLAIDYTKDNFEDLPEKFDVVYDA  303 (392)
Q Consensus       226 ~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G--~~~vi~~~~~~~~~~~~~~D~vid~  303 (392)
                      ......++++||=+| +| .|..+..+++  .+.+++.++.++.-++.+++..  .. ++..+-..+. ..+.||+|+..
T Consensus        51 ~~l~~~~~~~vLDiG-cG-~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~~~~~-~~~~d~~~~~-~~~~fD~v~~~  124 (279)
T 3ccf_A           51 QLLNPQPGEFILDLG-CG-TGQLTEKIAQ--SGAEVLGTDNAATMIEKARQNYPHLH-FDVADARNFR-VDKPLDAVFSN  124 (279)
T ss_dssp             HHHCCCTTCEEEEET-CT-TSHHHHHHHH--TTCEEEEEESCHHHHHHHHHHCTTSC-EEECCTTTCC-CSSCEEEEEEE
T ss_pred             HHhCCCCCCEEEEec-CC-CCHHHHHHHh--CCCeEEEEECCHHHHHHHHhhCCCCE-EEECChhhCC-cCCCcCEEEEc
Confidence            344567889999997 44 4888888887  3889999999998888887542  22 2222222222 23579999865


Q ss_pred             Cc---------cHHHHHHhcccCCeEEEE
Q 016265          304 IG---------QCDRAVKAIKEGGTVVAL  323 (392)
Q Consensus       304 ~G---------~~~~~~~~l~~~G~iv~~  323 (392)
                      ..         .+..+.+.|+|||+++..
T Consensus       125 ~~l~~~~d~~~~l~~~~~~LkpgG~l~~~  153 (279)
T 3ccf_A          125 AMLHWVKEPEAAIASIHQALKSGGRFVAE  153 (279)
T ss_dssp             SCGGGCSCHHHHHHHHHHHEEEEEEEEEE
T ss_pred             chhhhCcCHHHHHHHHHHhcCCCcEEEEE
Confidence            32         147788899999998865

>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum}

Probab=94.38  E-value=0.021  Score=53.55  Aligned_cols=84  Identities=11%  Similarity=0.222  Sum_probs=56.1

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCCccccCCCCccEEEecCcc-----
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFEDLPEKFDVVYDAIGQ-----  306 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~~~~~~~D~vid~~G~-----  306 (392)
                      .|.+|.|+| .|.+|...++.++. +|.+|++.+++.++.+.     ++..+.  ..++.+..+..|+|+-++..     
T Consensus       136 ~gktvGIiG-lG~IG~~vA~~l~~-~G~~V~~~dr~~~~~~~-----~~~~~~--~~~l~ell~~aDvV~l~lPlt~~t~  206 (324)
T 3evt_A          136 TGQQLLIYG-TGQIGQSLAAKASA-LGMHVIGVNTTGHPADH-----FHETVA--FTATADALATANFIVNALPLTPTTH  206 (324)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHH-TTCEEEEEESSCCCCTT-----CSEEEE--GGGCHHHHHHCSEEEECCCCCGGGT
T ss_pred             cCCeEEEEC-cCHHHHHHHHHHHh-CCCEEEEECCCcchhHh-----Hhhccc--cCCHHHHHhhCCEEEEcCCCchHHH
Confidence            478999998 99999999999998 69999999886554321     122111  11223333456777776531     


Q ss_pred             --H-HHHHHhcccCCeEEEEc
Q 016265          307 --C-DRAVKAIKEGGTVVALT  324 (392)
Q Consensus       307 --~-~~~~~~l~~~G~iv~~g  324 (392)
                        + ...+..|+++..+|.++
T Consensus       207 ~li~~~~l~~mk~gailIN~a  227 (324)
T 3evt_A          207 HLFSTELFQQTKQQPMLINIG  227 (324)
T ss_dssp             TCBSHHHHHTCCSCCEEEECS
T ss_pred             HhcCHHHHhcCCCCCEEEEcC
Confidence              1 56677777777777664

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=94.37  E-value=0.069  Score=48.63  Aligned_cols=87  Identities=24%  Similarity=0.287  Sum_probs=58.7

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHH-HhcCCcEEEeCCCCccccCCCCccEEEecCcc-H-H
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFL-KSLGADLAIDYTKDNFEDLPEKFDVVYDAIGQ-C-D  308 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~-~~~G~~~vi~~~~~~~~~~~~~~D~vid~~G~-~-~  308 (392)
                      .|.+|+|+| +|++|.+.+..+... |+++++..++.++.+.+ +++|.. +.+    +..+..+.+|+||.|++. . .
T Consensus       128 ~~~~v~iiG-aG~~g~aia~~L~~~-g~~V~v~~r~~~~~~~l~~~~g~~-~~~----~~~~~~~~aDiVi~atp~~~~~  200 (275)
T 2hk9_A          128 KEKSILVLG-AGGASRAVIYALVKE-GAKVFLWNRTKEKAIKLAQKFPLE-VVN----SPEEVIDKVQVIVNTTSVGLKD  200 (275)
T ss_dssp             GGSEEEEEC-CSHHHHHHHHHHHHH-TCEEEEECSSHHHHHHHTTTSCEE-ECS----CGGGTGGGCSEEEECSSTTSST
T ss_pred             CCCEEEEEC-chHHHHHHHHHHHHc-CCEEEEEECCHHHHHHHHHHcCCe-eeh----hHHhhhcCCCEEEEeCCCCCCC
Confidence            578999998 899999988888774 88888888887776554 355532 111    333444578999999862 1 1


Q ss_pred             ---HH--HHhcccCCeEEEEcC
Q 016265          309 ---RA--VKAIKEGGTVVALTG  325 (392)
Q Consensus       309 ---~~--~~~l~~~G~iv~~g~  325 (392)
                         ..  ...++++..++.++.
T Consensus       201 ~~~~~i~~~~l~~g~~viDv~~  222 (275)
T 2hk9_A          201 EDPEIFNYDLIKKDHVVVDIIY  222 (275)
T ss_dssp             TCCCSSCGGGCCTTSEEEESSS
T ss_pred             CCCCCCCHHHcCCCCEEEEcCC
Confidence               11  345677777766654

>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae}

Probab=94.36  E-value=0.067  Score=52.71  Aligned_cols=91  Identities=26%  Similarity=0.277  Sum_probs=57.6

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHh-cCCcE-EEeCCCC-ccccCCCCccEEEecCcc-H
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKS-LGADL-AIDYTKD-NFEDLPEKFDVVYDAIGQ-C  307 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~-~G~~~-vi~~~~~-~~~~~~~~~D~vid~~G~-~  307 (392)
                      .+.+|+|+| +|++|..++..+....+.++++++++.++.+.+.+ .+... .+|..+. .+.+..+++|+||+|++. .
T Consensus        22 ~~k~VlIiG-AGgiG~aia~~L~~~~g~~V~v~~R~~~ka~~la~~~~~~~~~~D~~d~~~l~~~l~~~DvVIn~tp~~~  100 (467)
T 2axq_A           22 MGKNVLLLG-SGFVAQPVIDTLAANDDINVTVACRTLANAQALAKPSGSKAISLDVTDDSALDKVLADNDVVISLIPYTF  100 (467)
T ss_dssp             -CEEEEEEC-CSTTHHHHHHHHHTSTTEEEEEEESSHHHHHHHHGGGTCEEEECCTTCHHHHHHHHHTSSEEEECSCGGG
T ss_pred             CCCEEEEEC-ChHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhcCCcEEEEecCCHHHHHHHHcCCCEEEECCchhh
Confidence            357899999 59999998877765336788888888887765543 34322 2233221 222333479999999983 2


Q ss_pred             --HHHHHhcccCCeEEEE
Q 016265          308 --DRAVKAIKEGGTVVAL  323 (392)
Q Consensus       308 --~~~~~~l~~~G~iv~~  323 (392)
                        .....+++.+-.++..
T Consensus       101 ~~~v~~a~l~~g~~vvd~  118 (467)
T 2axq_A          101 HPNVVKSAIRTKTDVVTS  118 (467)
T ss_dssp             HHHHHHHHHHHTCEEEEC
T ss_pred             hHHHHHHHHhcCCEEEEe
Confidence              3344566666666654

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=94.36  E-value=0.049  Score=48.94  Aligned_cols=34  Identities=21%  Similarity=0.332  Sum_probs=26.3

Q ss_pred             CCeEEEEcCCCcHHHHHHHHHHHhcCC-eEEEEeCCc
Q 016265          233 GKSILVLNGSGGVGSLVIQLAKQVFGA-SRVAATSST  268 (392)
Q Consensus       233 g~~VlI~Ga~G~vG~~aiqlak~~~G~-~vv~~~~~~  268 (392)
                      +.+|+|+| +|++|..+++.+... |. ++++++...
T Consensus        31 ~~~VlVvG-~Gg~G~~va~~La~~-Gv~~i~lvD~d~   65 (249)
T 1jw9_B           31 DSRVLIVG-LGGLGCAASQYLASA-GVGNLTLLDFDT   65 (249)
T ss_dssp             HCEEEEEC-CSHHHHHHHHHHHHH-TCSEEEEECCCB
T ss_pred             CCeEEEEe-eCHHHHHHHHHHHHc-CCCeEEEEcCCC
Confidence            46899998 999999988877664 87 566666655

>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2

Probab=94.34  E-value=0.09  Score=48.09  Aligned_cols=88  Identities=20%  Similarity=0.328  Sum_probs=54.8

Q ss_pred             CCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCc------ccHHHHH---hcCCcEE-EeCCCC-ccccCCCCccEEE
Q 016265          233 GKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSST------RNLEFLK---SLGADLA-IDYTKD-NFEDLPEKFDVVY  301 (392)
Q Consensus       233 g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~------~~~~~~~---~~G~~~v-i~~~~~-~~~~~~~~~D~vi  301 (392)
                      ..+|+|+||+|.+|...+..+.. .|.+|++++++.      ++.+.++   ..|+..+ .|..+. .+.+..+++|+||
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~-~g~~V~~l~R~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~l~~~~~~~d~vi   82 (308)
T 1qyc_A            4 RSRILLIGATGYIGRHVAKASLD-LGHPTFLLVRESTASSNSEKAQLLESFKASGANIVHGSIDDHASLVEAVKNVDVVI   82 (308)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHH-TTCCEEEECCCCCTTTTHHHHHHHHHHHTTTCEEECCCTTCHHHHHHHHHTCSEEE
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHh-CCCCEEEEECCcccccCHHHHHHHHHHHhCCCEEEEeccCCHHHHHHHHcCCCEEE
Confidence            45799999999999998887776 489999888863      3333332   3454322 133221 2233335799999


Q ss_pred             ecCcc-----HHHHHHhcccC---CeEE
Q 016265          302 DAIGQ-----CDRAVKAIKEG---GTVV  321 (392)
Q Consensus       302 d~~G~-----~~~~~~~l~~~---G~iv  321 (392)
                      .+.+.     ...++++++..   ++++
T Consensus        83 ~~a~~~~~~~~~~l~~aa~~~g~v~~~v  110 (308)
T 1qyc_A           83 STVGSLQIESQVNIIKAIKEVGTVKRFF  110 (308)
T ss_dssp             ECCCGGGSGGGHHHHHHHHHHCCCSEEE
T ss_pred             ECCcchhhhhHHHHHHHHHhcCCCceEe
Confidence            99872     24444544432   4665

>3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei}

Probab=94.33  E-value=0.039  Score=52.21  Aligned_cols=73  Identities=19%  Similarity=0.125  Sum_probs=48.2

Q ss_pred             CCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHh-cCCcEE-EeCC-CC-ccccCCCCccEEEecCc
Q 016265          233 GKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKS-LGADLA-IDYT-KD-NFEDLPEKFDVVYDAIG  305 (392)
Q Consensus       233 g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~-~G~~~v-i~~~-~~-~~~~~~~~~D~vid~~G  305 (392)
                      +.+|||+||+|.+|...++.+....|.+|++++++..+.+.+.+ .+...+ .|.. +. .+.+..+++|+||.+.+
T Consensus        24 ~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~v~~~~~Dl~~d~~~~~~~~~~~d~Vih~A~  100 (372)
T 3slg_A           24 AKKVLILGVNGFIGHHLSKRILETTDWEVFGMDMQTDRLGDLVKHERMHFFEGDITINKEWVEYHVKKCDVILPLVA  100 (372)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHHSSCEEEEEESCCTTTGGGGGSTTEEEEECCTTTCHHHHHHHHHHCSEEEECBC
T ss_pred             CCEEEEECCCChHHHHHHHHHHhCCCCEEEEEeCChhhhhhhccCCCeEEEeCccCCCHHHHHHHhccCCEEEEcCc
Confidence            57899999999999998887665238899999987766554433 233222 1332 21 12223347899999876

>2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase reductase, NADPH, dihydroquercetin, rossmann fold, oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera} PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A*

Probab=94.33  E-value=0.12  Score=48.13  Aligned_cols=73  Identities=18%  Similarity=0.230  Sum_probs=45.6

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHH---HHHhcCC---c-EEE--eCCC-CccccCCCCccEEE
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLE---FLKSLGA---D-LAI--DYTK-DNFEDLPEKFDVVY  301 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~---~~~~~G~---~-~vi--~~~~-~~~~~~~~~~D~vi  301 (392)
                      .+.+|||+||+|.+|...+..+.. .|.+|++++++.++.+   .+.++..   . .++  |..+ +.+.+..+++|+||
T Consensus         4 ~~~~vlVTGatGfIG~~l~~~L~~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~Vi   82 (337)
T 2c29_D            4 QSETVCVTGASGFIGSWLVMRLLE-RGYTVRATVRDPTNVKKVKHLLDLPKAETHLTLWKADLADEGSFDEAIKGCTGVF   82 (337)
T ss_dssp             --CEEEETTTTSHHHHHHHHHHHH-TTCEEEEEESCTTCHHHHHHHHTSTTHHHHEEEEECCTTSTTTTHHHHTTCSEEE
T ss_pred             CCCEEEEECCchHHHHHHHHHHHH-CCCEEEEEECCcchhHHHHHHHhcccCCCeEEEEEcCCCCHHHHHHHHcCCCEEE
Confidence            467899999999999998877766 4999998888765432   2222211   1 122  3222 22333345789999


Q ss_pred             ecCc
Q 016265          302 DAIG  305 (392)
Q Consensus       302 d~~G  305 (392)
                      .+.+
T Consensus        83 h~A~   86 (337)
T 2c29_D           83 HVAT   86 (337)
T ss_dssp             ECCC
T ss_pred             Eecc
Confidence            8764

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A

Probab=94.33  E-value=0.16  Score=48.42  Aligned_cols=92  Identities=17%  Similarity=0.231  Sum_probs=62.5

Q ss_pred             CCCCCeEEEEcCCCcHHHHHHHHHHHh-cCCeEEEEeCCcccHHHHHhc---------C----Cc-EEEeCCCCccc---
Q 016265          230 FSAGKSILVLNGSGGVGSLVIQLAKQV-FGASRVAATSSTRNLEFLKSL---------G----AD-LAIDYTKDNFE---  291 (392)
Q Consensus       230 ~~~g~~VlI~Ga~G~vG~~aiqlak~~-~G~~vv~~~~~~~~~~~~~~~---------G----~~-~vi~~~~~~~~---  291 (392)
                      ..+|.+||=+| +| .|..+..+++.. .+.+++.++.++..++.+++.         |    .. .++..+-.+..   
T Consensus        81 ~~~~~~VLDlG-cG-~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~  158 (383)
T 4fsd_A           81 SLEGATVLDLG-CG-TGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAE  158 (383)
T ss_dssp             GGTTCEEEEES-CT-TSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCB
T ss_pred             CCCCCEEEEec-Cc-cCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcc
Confidence            56889999997 44 488888888874 256899999999888887653         3    11 22222222221   


Q ss_pred             --cC-CCCccEEEecCc---------cHHHHHHhcccCCeEEEE
Q 016265          292 --DL-PEKFDVVYDAIG---------QCDRAVKAIKEGGTVVAL  323 (392)
Q Consensus       292 --~~-~~~~D~vid~~G---------~~~~~~~~l~~~G~iv~~  323 (392)
                        .. .+.||+|+....         .+..+.++|+|||+++..
T Consensus       159 ~~~~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~  202 (383)
T 4fsd_A          159 PEGVPDSSVDIVISNCVCNLSTNKLALFKEIHRVLRDGGELYFS  202 (383)
T ss_dssp             SCCCCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEE
T ss_pred             cCCCCCCCEEEEEEccchhcCCCHHHHHHHHHHHcCCCCEEEEE
Confidence              11 347999996532         247888999999998865

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}

Probab=94.33  E-value=0.22  Score=44.76  Aligned_cols=84  Identities=8%  Similarity=0.149  Sum_probs=55.3

Q ss_pred             CeEEEEcCCCcHHHHHHHHHHHhcCCe-EEEEeCCcccHHHHHh-cCCcEEEeCCCCccccCCCCccEEEecCcc--HHH
Q 016265          234 KSILVLNGSGGVGSLVIQLAKQVFGAS-RVAATSSTRNLEFLKS-LGADLAIDYTKDNFEDLPEKFDVVYDAIGQ--CDR  309 (392)
Q Consensus       234 ~~VlI~Ga~G~vG~~aiqlak~~~G~~-vv~~~~~~~~~~~~~~-~G~~~vi~~~~~~~~~~~~~~D~vid~~G~--~~~  309 (392)
                      -+|.|+| +|.+|...++.+... |.+ +.+.++++++.+.+.+ +|... .    .+..+..+.+|+||.|+..  ...
T Consensus        11 m~i~iiG-~G~mG~~~a~~l~~~-g~~~v~~~~~~~~~~~~~~~~~g~~~-~----~~~~~~~~~~Dvvi~av~~~~~~~   83 (266)
T 3d1l_A           11 TPIVLIG-AGNLATNLAKALYRK-GFRIVQVYSRTEESARELAQKVEAEY-T----TDLAEVNPYAKLYIVSLKDSAFAE   83 (266)
T ss_dssp             CCEEEEC-CSHHHHHHHHHHHHH-TCCEEEEECSSHHHHHHHHHHTTCEE-E----SCGGGSCSCCSEEEECCCHHHHHH
T ss_pred             CeEEEEc-CCHHHHHHHHHHHHC-CCeEEEEEeCCHHHHHHHHHHcCCce-e----CCHHHHhcCCCEEEEecCHHHHHH
Confidence            4799998 899999887777664 887 6777888888776654 47532 1    1233444578999999872  233


Q ss_pred             HH----HhcccCCeEEEEc
Q 016265          310 AV----KAIKEGGTVVALT  324 (392)
Q Consensus       310 ~~----~~l~~~G~iv~~g  324 (392)
                      .+    ..++++..++.+.
T Consensus        84 v~~~l~~~~~~~~ivv~~s  102 (266)
T 3d1l_A           84 LLQGIVEGKREEALMVHTA  102 (266)
T ss_dssp             HHHHHHTTCCTTCEEEECC
T ss_pred             HHHHHHhhcCCCcEEEECC
Confidence            33    3344555566553

>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6

Probab=94.31  E-value=0.12  Score=48.67  Aligned_cols=83  Identities=19%  Similarity=0.198  Sum_probs=56.9

Q ss_pred             CCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCccc-HHHHHhcCCcEEEeCCCCccccCCCCccEEEecCcc--HHH
Q 016265          233 GKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRN-LEFLKSLGADLAIDYTKDNFEDLPEKFDVVYDAIGQ--CDR  309 (392)
Q Consensus       233 g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~-~~~~~~~G~~~vi~~~~~~~~~~~~~~D~vid~~G~--~~~  309 (392)
                      +.+|.|+| .|.+|.+.++.++. .|.+|++.++++++ .+.+++.|....      +..+.....|+||-|+..  ...
T Consensus        16 ~~~I~IIG-~G~mG~alA~~L~~-~G~~V~~~~~~~~~~~~~a~~~G~~~~------~~~e~~~~aDvVilavp~~~~~~   87 (338)
T 1np3_A           16 GKKVAIIG-YGSQGHAHACNLKD-SGVDVTVGLRSGSATVAKAEAHGLKVA------DVKTAVAAADVVMILTPDEFQGR   87 (338)
T ss_dssp             TSCEEEEC-CSHHHHHHHHHHHH-TTCCEEEECCTTCHHHHHHHHTTCEEE------CHHHHHHTCSEEEECSCHHHHHH
T ss_pred             CCEEEEEC-chHHHHHHHHHHHH-CcCEEEEEECChHHHHHHHHHCCCEEc------cHHHHHhcCCEEEEeCCcHHHHH
Confidence            45799998 99999999888877 58888888887665 677788886422      122223468999999872  233


Q ss_pred             HH-----HhcccCCeEEEE
Q 016265          310 AV-----KAIKEGGTVVAL  323 (392)
Q Consensus       310 ~~-----~~l~~~G~iv~~  323 (392)
                      .+     ..++++..++..
T Consensus        88 v~~~~i~~~l~~~~ivi~~  106 (338)
T 1np3_A           88 LYKEEIEPNLKKGATLAFA  106 (338)
T ss_dssp             HHHHHTGGGCCTTCEEEES
T ss_pred             HHHHHHHhhCCCCCEEEEc
Confidence            33     345556555543

>2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A*

Probab=94.30  E-value=0.053  Score=51.10  Aligned_cols=83  Identities=16%  Similarity=0.217  Sum_probs=59.6

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCCccccCCCCccEEEecCcc-----
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFEDLPEKFDVVYDAIGQ-----  306 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~~~~~~~D~vid~~G~-----  306 (392)
                      .|.+|.|+| .|.+|...++.++. +|.+|++.+++.++.  . +.+...    .  ++.+..+..|+|+-++..     
T Consensus       147 ~gktvgIiG-lG~IG~~vA~~l~~-~G~~V~~~d~~~~~~--~-~~~~~~----~--~l~ell~~aDvV~l~~Plt~~t~  215 (343)
T 2yq5_A          147 YNLTVGLIG-VGHIGSAVAEIFSA-MGAKVIAYDVAYNPE--F-EPFLTY----T--DFDTVLKEADIVSLHTPLFPSTE  215 (343)
T ss_dssp             GGSEEEEEC-CSHHHHHHHHHHHH-TTCEEEEECSSCCGG--G-TTTCEE----C--CHHHHHHHCSEEEECCCCCTTTT
T ss_pred             CCCeEEEEe-cCHHHHHHHHHHhh-CCCEEEEECCChhhh--h-hccccc----c--CHHHHHhcCCEEEEcCCCCHHHH
Confidence            478999998 99999999999998 699999998876541  1 112111    1  334444567999888651     


Q ss_pred             --H-HHHHHhcccCCeEEEEcC
Q 016265          307 --C-DRAVKAIKEGGTVVALTG  325 (392)
Q Consensus       307 --~-~~~~~~l~~~G~iv~~g~  325 (392)
                        + ...++.|+++..+|.++.
T Consensus       216 ~li~~~~l~~mk~gailIN~aR  237 (343)
T 2yq5_A          216 NMIGEKQLKEMKKSAYLINCAR  237 (343)
T ss_dssp             TCBCHHHHHHSCTTCEEEECSC
T ss_pred             HHhhHHHHhhCCCCcEEEECCC
Confidence              1 577888999999887753

>3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, 3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus thuringiensis serovar kurstakorganism_taxid} SCOP: c.2.1.0

Probab=94.29  E-value=0.067  Score=48.01  Aligned_cols=73  Identities=22%  Similarity=0.287  Sum_probs=45.8

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcc-cHHHHHh----cCCc-EEE--eCCCCc-cccC-------CC
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTR-NLEFLKS----LGAD-LAI--DYTKDN-FEDL-------PE  295 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~-~~~~~~~----~G~~-~vi--~~~~~~-~~~~-------~~  295 (392)
                      .+.+++|+||+|++|...++.... .|++|+++.+++. ..+.+++    .+.. .++  |..+.. +.+.       .+
T Consensus         6 ~~k~vlVTGas~gIG~~~a~~l~~-~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g   84 (264)
T 3i4f_A            6 FVRHALITAGTKGLGKQVTEKLLA-KGYSVTVTYHSDTTAMETMKETYKDVEERLQFVQADVTKKEDLHKIVEEAMSHFG   84 (264)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHH-TTCEEEEEESSCHHHHHHHHHHTGGGGGGEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             ccCEEEEeCCCchhHHHHHHHHHH-CCCEEEEEcCCChHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHhC
Confidence            367899999999999988776666 4999998876443 3444332    2222 122  322211 1111       23


Q ss_pred             CccEEEecCc
Q 016265          296 KFDVVYDAIG  305 (392)
Q Consensus       296 ~~D~vid~~G  305 (392)
                      ++|++|.+.|
T Consensus        85 ~id~lv~~Ag   94 (264)
T 3i4f_A           85 KIDFLINNAG   94 (264)
T ss_dssp             CCCEEECCCC
T ss_pred             CCCEEEECCc
Confidence            7899999987

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=94.26  E-value=0.11  Score=48.17  Aligned_cols=65  Identities=12%  Similarity=0.084  Sum_probs=46.9

Q ss_pred             CeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCCccccCCCCccEEEecCc
Q 016265          234 KSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFEDLPEKFDVVYDAIG  305 (392)
Q Consensus       234 ~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~~~~~~~D~vid~~G  305 (392)
                      .+|.|+| .|.+|...++.+.. .|.+|++.++++++.+.+.+.|+...     .+..+..+..|+||-|+.
T Consensus        22 ~~I~iIG-~G~mG~~~A~~l~~-~G~~V~~~dr~~~~~~~l~~~g~~~~-----~~~~~~~~~aDvvi~~vp   86 (310)
T 3doj_A           22 MEVGFLG-LGIMGKAMSMNLLK-NGFKVTVWNRTLSKCDELVEHGASVC-----ESPAEVIKKCKYTIAMLS   86 (310)
T ss_dssp             CEEEEEC-CSHHHHHHHHHHHH-TTCEEEEECSSGGGGHHHHHTTCEEC-----SSHHHHHHHCSEEEECCS
T ss_pred             CEEEEEC-ccHHHHHHHHHHHH-CCCeEEEEeCCHHHHHHHHHCCCeEc-----CCHHHHHHhCCEEEEEcC
Confidence            5799998 99999988777766 49999999999999888887775321     112222234577777764

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=94.25  E-value=0.1  Score=48.06  Aligned_cols=83  Identities=14%  Similarity=0.179  Sum_probs=57.6

Q ss_pred             CeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCCccccCCCCccEEEecCcc---H---
Q 016265          234 KSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFEDLPEKFDVVYDAIGQ---C---  307 (392)
Q Consensus       234 ~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~~~~~~~D~vid~~G~---~---  307 (392)
                      .+|.|+| .|.+|...++.+.. .|.+|++.++++++.+.+.+.|+...     .+..+..+ .|+||.|+..   .   
T Consensus        16 ~~I~vIG-~G~mG~~~A~~l~~-~G~~V~~~dr~~~~~~~~~~~g~~~~-----~~~~~~~~-aDvvi~~vp~~~~~~~v   87 (296)
T 3qha_A           16 LKLGYIG-LGNMGAPMATRMTE-WPGGVTVYDIRIEAMTPLAEAGATLA-----DSVADVAA-ADLIHITVLDDAQVREV   87 (296)
T ss_dssp             CCEEEEC-CSTTHHHHHHHHTT-STTCEEEECSSTTTSHHHHHTTCEEC-----SSHHHHTT-SSEEEECCSSHHHHHHH
T ss_pred             CeEEEEC-cCHHHHHHHHHHHH-CCCeEEEEeCCHHHHHHHHHCCCEEc-----CCHHHHHh-CCEEEEECCChHHHHHH
Confidence            4799998 99999987777666 48999999999999888888775321     23344445 7888888762   2   


Q ss_pred             -HHHHHhcccCCeEEEEc
Q 016265          308 -DRAVKAIKEGGTVVALT  324 (392)
Q Consensus       308 -~~~~~~l~~~G~iv~~g  324 (392)
                       +.....++++..++..+
T Consensus        88 ~~~l~~~l~~g~ivv~~s  105 (296)
T 3qha_A           88 VGELAGHAKPGTVIAIHS  105 (296)
T ss_dssp             HHHHHTTCCTTCEEEECS
T ss_pred             HHHHHHhcCCCCEEEEeC
Confidence             23344455655665554

>2o7s_A DHQ-SDH PR, bifunctional 3-dehydroquinate dehydratase/shikima dehydrogenase; shikimate, NADPH, dehydroshikimate, bifunctional enzyme; HET: DHK TLA NAP; 1.78A {Arabidopsis thaliana} PDB: 2o7q_A* 2gpt_A*

Probab=94.24  E-value=0.077  Score=53.07  Aligned_cols=69  Identities=28%  Similarity=0.423  Sum_probs=44.8

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHH-HhcCCcEEEeCCCCccccC-CCCccEEEecCc
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFL-KSLGADLAIDYTKDNFEDL-PEKFDVVYDAIG  305 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~-~~~G~~~vi~~~~~~~~~~-~~~~D~vid~~G  305 (392)
                      .|.+++|+| +|++|.+++..+... |++++++.++.++.+.+ ++++.. +++..  +..+. ...+|++++++|
T Consensus       363 ~~k~vlV~G-aGGig~aia~~L~~~-G~~V~i~~R~~~~a~~la~~~~~~-~~~~~--dl~~~~~~~~DilVN~ag  433 (523)
T 2o7s_A          363 ASKTVVVIG-AGGAGKALAYGAKEK-GAKVVIANRTYERALELAEAIGGK-ALSLT--DLDNYHPEDGMVLANTTS  433 (523)
T ss_dssp             ---CEEEEC-CSHHHHHHHHHHHHH-CC-CEEEESSHHHHHHHHHHTTC--CEETT--TTTTC--CCSEEEEECSS
T ss_pred             CCCEEEEEC-CcHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHcCCc-eeeHH--HhhhccccCceEEEECCC
Confidence            467899999 589999988877774 99888888887776554 456542 23332  22221 234899999987

>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}

Probab=94.23  E-value=0.09  Score=48.10  Aligned_cols=94  Identities=19%  Similarity=0.177  Sum_probs=59.6

Q ss_pred             HHHHhcCC-CCCCeEEEEcCCCcHHHHHHHHHHHhcCC-eEEEEeCCcccHHHHH-hcCCcEEEeCCCCccccCCCCccE
Q 016265          223 EGLERTGF-SAGKSILVLNGSGGVGSLVIQLAKQVFGA-SRVAATSSTRNLEFLK-SLGADLAIDYTKDNFEDLPEKFDV  299 (392)
Q Consensus       223 ~al~~~~~-~~g~~VlI~Ga~G~vG~~aiqlak~~~G~-~vv~~~~~~~~~~~~~-~~G~~~vi~~~~~~~~~~~~~~D~  299 (392)
                      .+|+...+ -.|.+++|+| +|++|.+++..++.. |+ +++++.++.+|.+.+. +++   .+.+.  ++.+ . .+|+
T Consensus       111 ~~L~~~~~~~~~k~vlvlG-aGGaaraia~~L~~~-G~~~v~v~nRt~~ka~~La~~~~---~~~~~--~l~~-l-~~Di  181 (282)
T 3fbt_A          111 KMLSKFRVEIKNNICVVLG-SGGAARAVLQYLKDN-FAKDIYVVTRNPEKTSEIYGEFK---VISYD--ELSN-L-KGDV  181 (282)
T ss_dssp             HHHHHTTCCCTTSEEEEEC-SSTTHHHHHHHHHHT-TCSEEEEEESCHHHHHHHCTTSE---EEEHH--HHTT-C-CCSE
T ss_pred             HHHHHcCCCccCCEEEEEC-CcHHHHHHHHHHHHc-CCCEEEEEeCCHHHHHHHHHhcC---cccHH--HHHh-c-cCCE
Confidence            34444344 3588999998 799999988888774 88 7778888887765543 231   22221  1222 2 7899


Q ss_pred             EEecCc-cH-------HHHHHhcccCCeEEEEcC
Q 016265          300 VYDAIG-QC-------DRAVKAIKEGGTVVALTG  325 (392)
Q Consensus       300 vid~~G-~~-------~~~~~~l~~~G~iv~~g~  325 (392)
                      ||+|+. .+       ..-...++++..++++.-
T Consensus       182 vInaTp~Gm~~~~~~~pi~~~~l~~~~~v~DlvY  215 (282)
T 3fbt_A          182 IINCTPKGMYPKEGESPVDKEVVAKFSSAVDLIY  215 (282)
T ss_dssp             EEECSSTTSTTSTTCCSSCHHHHTTCSEEEESCC
T ss_pred             EEECCccCccCCCccCCCCHHHcCCCCEEEEEee
Confidence            999974 11       113455677776666643

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41

Probab=94.22  E-value=0.14  Score=45.82  Aligned_cols=89  Identities=17%  Similarity=0.231  Sum_probs=61.2

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCCccccCCCCccEEEecCc-----
Q 016265          231 SAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFEDLPEKFDVVYDAIG-----  305 (392)
Q Consensus       231 ~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~~~~~~~D~vid~~G-----  305 (392)
                      .++.+||-+| +| .|..+..+++.  |.+++.++.+++-++.+++.....++..+-.......+.+|+|+....     
T Consensus        53 ~~~~~vLDiG-cG-~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~  128 (260)
T 2avn_A           53 KNPCRVLDLG-GG-TGKWSLFLQER--GFEVVLVDPSKEMLEVAREKGVKNVVEAKAEDLPFPSGAFEAVLALGDVLSYV  128 (260)
T ss_dssp             CSCCEEEEET-CT-TCHHHHHHHTT--TCEEEEEESCHHHHHHHHHHTCSCEEECCTTSCCSCTTCEEEEEECSSHHHHC
T ss_pred             CCCCeEEEeC-CC-cCHHHHHHHHc--CCeEEEEeCCHHHHHHHHhhcCCCEEECcHHHCCCCCCCEEEEEEcchhhhcc
Confidence            3788999997 44 57788888864  789999999999888887654432333322222212346999986421     


Q ss_pred             -----cHHHHHHhcccCCeEEEE
Q 016265          306 -----QCDRAVKAIKEGGTVVAL  323 (392)
Q Consensus       306 -----~~~~~~~~l~~~G~iv~~  323 (392)
                           .+..+.++|+|||+++..
T Consensus       129 ~~~~~~l~~~~~~LkpgG~l~~~  151 (260)
T 2avn_A          129 ENKDKAFSEIRRVLVPDGLLIAT  151 (260)
T ss_dssp             SCHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ccHHHHHHHHHHHcCCCeEEEEE
Confidence                 136778899999998764

>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=94.20  E-value=0.073  Score=49.49  Aligned_cols=73  Identities=16%  Similarity=0.166  Sum_probs=46.0

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHH-HH---Hh-cCCc-EEE--eCCCC-ccccCC--CCccEE
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLE-FL---KS-LGAD-LAI--DYTKD-NFEDLP--EKFDVV  300 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~-~~---~~-~G~~-~vi--~~~~~-~~~~~~--~~~D~v  300 (392)
                      .+.+|||+||+|.+|...++.+.. .|.+|++++++..+.+ .+   .+ .+.. .++  |..+. .+.+..  .++|+|
T Consensus         4 ~~~~vlVTGatG~iG~~l~~~L~~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~v   82 (341)
T 3enk_A            4 TKGTILVTGGAGYIGSHTAVELLA-HGYDVVIADNLVNSKREAIARIEKITGKTPAFHETDVSDERALARIFDAHPITAA   82 (341)
T ss_dssp             SSCEEEEETTTSHHHHHHHHHHHH-TTCEEEEECCCSSSCTHHHHHHHHHHSCCCEEECCCTTCHHHHHHHHHHSCCCEE
T ss_pred             CCcEEEEecCCcHHHHHHHHHHHH-CCCcEEEEecCCcchHHHHHHHHhhcCCCceEEEeecCCHHHHHHHHhccCCcEE
Confidence            457899999999999998887776 4999999987554322 22   11 1222 222  22221 122222  279999


Q ss_pred             EecCc
Q 016265          301 YDAIG  305 (392)
Q Consensus       301 id~~G  305 (392)
                      |++.|
T Consensus        83 ih~A~   87 (341)
T 3enk_A           83 IHFAA   87 (341)
T ss_dssp             EECCC
T ss_pred             EECcc
Confidence            99976

>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2

Probab=94.20  E-value=0.087  Score=48.33  Aligned_cols=88  Identities=24%  Similarity=0.402  Sum_probs=56.0

Q ss_pred             CCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCc-----ccHHHHH---hcCCcEE-EeCCC-CccccCCCCccEEEe
Q 016265          233 GKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSST-----RNLEFLK---SLGADLA-IDYTK-DNFEDLPEKFDVVYD  302 (392)
Q Consensus       233 g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~-----~~~~~~~---~~G~~~v-i~~~~-~~~~~~~~~~D~vid  302 (392)
                      ..+|+|+||+|.+|...+..+.. .|.+|++++++.     ++.+.++   ..|+..+ .|..+ +.+.+..+++|+||.
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~-~g~~V~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~l~~~~~~~d~vi~   82 (313)
T 1qyd_A            4 KSRVLIVGGTGYIGKRIVNASIS-LGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLDDHQRLVDALKQVDVVIS   82 (313)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHH-TTCCEEEECCSCCSSCHHHHHHHHHHHTTTCEEECCCSSCHHHHHHHHTTCSEEEE
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHh-CCCcEEEEECCCcccchhHHHHHHHHHhCCeEEEeCCCCCHHHHHHHHhCCCEEEE
Confidence            35799999999999998887777 489999998863     3443333   2344322 13322 123333458999999


Q ss_pred             cCcc---------HHHHHHhcccCC---eEE
Q 016265          303 AIGQ---------CDRAVKAIKEGG---TVV  321 (392)
Q Consensus       303 ~~G~---------~~~~~~~l~~~G---~iv  321 (392)
                      +.|.         ...++++++..|   ++|
T Consensus        83 ~a~~~~~~~~~~~~~~l~~aa~~~g~v~~~v  113 (313)
T 1qyd_A           83 ALAGGVLSHHILEQLKLVEAIKEAGNIKRFL  113 (313)
T ss_dssp             CCCCSSSSTTTTTHHHHHHHHHHSCCCSEEE
T ss_pred             CCccccchhhHHHHHHHHHHHHhcCCCceEE
Confidence            8762         245555555444   676

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=94.19  E-value=0.18  Score=44.43  Aligned_cols=90  Identities=12%  Similarity=0.154  Sum_probs=61.6

Q ss_pred             CCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCCcc-ccC-CCCccEEEecC--
Q 016265          229 GFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNF-EDL-PEKFDVVYDAI--  304 (392)
Q Consensus       229 ~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~-~~~-~~~~D~vid~~--  304 (392)
                      .++++.+||=+| +| .|..+..+++.  |++++.++.+++.++.+++.  ..++..+..++ ... .+.||+|+..-  
T Consensus        38 ~~~~~~~vLDiG-cG-~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~--~~~~~~d~~~~~~~~~~~~fD~i~~~~~l  111 (240)
T 3dli_A           38 YFKGCRRVLDIG-CG-RGEFLELCKEE--GIESIGVDINEDMIKFCEGK--FNVVKSDAIEYLKSLPDKYLDGVMISHFV  111 (240)
T ss_dssp             GTTTCSCEEEET-CT-TTHHHHHHHHH--TCCEEEECSCHHHHHHHHTT--SEEECSCHHHHHHTSCTTCBSEEEEESCG
T ss_pred             hhcCCCeEEEEe-CC-CCHHHHHHHhC--CCcEEEEECCHHHHHHHHhh--cceeeccHHHHhhhcCCCCeeEEEECCch
Confidence            357889999997 44 57777777764  88999999999888888766  22222222121 122 35799998642  


Q ss_pred             ---c------cHHHHHHhcccCCeEEEEc
Q 016265          305 ---G------QCDRAVKAIKEGGTVVALT  324 (392)
Q Consensus       305 ---G------~~~~~~~~l~~~G~iv~~g  324 (392)
                         .      .+..+.++|+|||+++...
T Consensus       112 ~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  140 (240)
T 3dli_A          112 EHLDPERLFELLSLCYSKMKYSSYIVIES  140 (240)
T ss_dssp             GGSCGGGHHHHHHHHHHHBCTTCCEEEEE
T ss_pred             hhCCcHHHHHHHHHHHHHcCCCcEEEEEe
Confidence               1      1467888999999988653

>2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A*

Probab=94.15  E-value=0.065  Score=49.80  Aligned_cols=72  Identities=28%  Similarity=0.276  Sum_probs=46.1

Q ss_pred             CCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccH--HHHHhcCC--c-EEE--eCCCC-ccccCCC--CccEEEe
Q 016265          233 GKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNL--EFLKSLGA--D-LAI--DYTKD-NFEDLPE--KFDVVYD  302 (392)
Q Consensus       233 g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~--~~~~~~G~--~-~vi--~~~~~-~~~~~~~--~~D~vid  302 (392)
                      |.+|||+||+|.+|...++.+.. .|.+|++++++..+.  +.++.++.  . ..+  |..+. .+.+..+  ++|+||.
T Consensus         3 ~~~vlVtGatG~iG~~l~~~L~~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vih   81 (345)
T 2z1m_A            3 GKRALITGIRGQDGAYLAKLLLE-KGYEVYGADRRSGEFASWRLKELGIENDVKIIHMDLLEFSNIIRTIEKVQPDEVYN   81 (345)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHH-TTCEEEEECSCCSTTTTHHHHHTTCTTTEEECCCCTTCHHHHHHHHHHHCCSEEEE
T ss_pred             CCEEEEECCCChHHHHHHHHHHH-CCCEEEEEECCCcccccccHhhccccCceeEEECCCCCHHHHHHHHHhcCCCEEEE
Confidence            57899999999999998877766 499999998876543  23444431  1 122  22221 1122222  4699999


Q ss_pred             cCc
Q 016265          303 AIG  305 (392)
Q Consensus       303 ~~G  305 (392)
                      +.|
T Consensus        82 ~A~   84 (345)
T 2z1m_A           82 LAA   84 (345)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            976

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}

Probab=94.15  E-value=0.15  Score=45.87  Aligned_cols=96  Identities=21%  Similarity=0.254  Sum_probs=64.0

Q ss_pred             hcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHh----cCCcE--EEeCCCCccccCCCCccEE
Q 016265          227 RTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKS----LGADL--AIDYTKDNFEDLPEKFDVV  300 (392)
Q Consensus       227 ~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~----~G~~~--vi~~~~~~~~~~~~~~D~v  300 (392)
                      ...+.++.+||-+| +| .|..+..+++...+.+++.++.++...+.+++    .|...  ++..+-.......+.+|+|
T Consensus        32 ~~~~~~~~~vLDiG-~G-~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v  109 (276)
T 3mgg_A           32 DTVYPPGAKVLEAG-CG-IGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKNVKFLQANIFSLPFEDSSFDHI  109 (276)
T ss_dssp             TCCCCTTCEEEETT-CT-TSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGCCSCTTCEEEE
T ss_pred             cccCCCCCeEEEec-CC-CCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEcccccCCCCCCCeeEE
Confidence            34568899999997 44 58888888887226789999999887777654    34321  2222211211123579999


Q ss_pred             EecCc---------cHHHHHHhcccCCeEEEEc
Q 016265          301 YDAIG---------QCDRAVKAIKEGGTVVALT  324 (392)
Q Consensus       301 id~~G---------~~~~~~~~l~~~G~iv~~g  324 (392)
                      +....         .+..+.++|+|||.++...
T Consensus       110 ~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~  142 (276)
T 3mgg_A          110 FVCFVLEHLQSPEEALKSLKKVLKPGGTITVIE  142 (276)
T ss_dssp             EEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEechhhhcCCHHHHHHHHHHHcCCCcEEEEEE
Confidence            86532         2578888999999998763

>3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua}

Probab=94.14  E-value=0.21  Score=47.15  Aligned_cols=84  Identities=21%  Similarity=0.288  Sum_probs=57.0

Q ss_pred             CeEEEEcCCCcHHHHHHHHHHHhcCCeEEEE-eCCcccHHHHHhcCCcEEEeCCCCccccC--CCCccEEEecCc---cH
Q 016265          234 KSILVLNGSGGVGSLVIQLAKQVFGASRVAA-TSSTRNLEFLKSLGADLAIDYTKDNFEDL--PEKFDVVYDAIG---QC  307 (392)
Q Consensus       234 ~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~-~~~~~~~~~~~~~G~~~vi~~~~~~~~~~--~~~~D~vid~~G---~~  307 (392)
                      -+|.|+| +|.+|...+...+...+.+++.+ ++++++.+.++++|+.. +    .++.++  ...+|+|+.|+.   ..
T Consensus         6 ~~vgiiG-~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~a~~~g~~~-~----~~~~~ll~~~~~D~V~i~tp~~~h~   79 (359)
T 3e18_A            6 YQLVIVG-YGGMGSYHVTLASAADNLEVHGVFDILAEKREAAAQKGLKI-Y----ESYEAVLADEKVDAVLIATPNDSHK   79 (359)
T ss_dssp             EEEEEEC-CSHHHHHHHHHHHTSTTEEEEEEECSSHHHHHHHHTTTCCB-C----SCHHHHHHCTTCCEEEECSCGGGHH
T ss_pred             CcEEEEC-cCHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHhcCCce-e----CCHHHHhcCCCCCEEEEcCCcHHHH
Confidence            3689998 89999887776665436677655 56777777777787632 2    233333  347999999987   35


Q ss_pred             HHHHHhcccCCeEEEEc
Q 016265          308 DRAVKAIKEGGTVVALT  324 (392)
Q Consensus       308 ~~~~~~l~~~G~iv~~g  324 (392)
                      +.+.++++.| +-|.+.
T Consensus        80 ~~~~~al~aG-khVl~E   95 (359)
T 3e18_A           80 ELAISALEAG-KHVVCE   95 (359)
T ss_dssp             HHHHHHHHTT-CEEEEE
T ss_pred             HHHHHHHHCC-CCEEee
Confidence            7777778765 444443

>3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold, beta-alpha-beta motifs, open twisted sheet, A NADP, oxidoreductase; 2.30A {Cladosporium herbarum} SCOP: c.2.1.0 PDB: 3gdf_A

Probab=94.13  E-value=0.11  Score=46.71  Aligned_cols=73  Identities=21%  Similarity=0.219  Sum_probs=45.9

Q ss_pred             CCCeEEEEcCC--CcHHHHHHHHHHHhcCCeEEEEeCCcccH--HHH----HhcCCcEE---EeCCCCc-ccc-------
Q 016265          232 AGKSILVLNGS--GGVGSLVIQLAKQVFGASRVAATSSTRNL--EFL----KSLGADLA---IDYTKDN-FED-------  292 (392)
Q Consensus       232 ~g~~VlI~Ga~--G~vG~~aiqlak~~~G~~vv~~~~~~~~~--~~~----~~~G~~~v---i~~~~~~-~~~-------  292 (392)
                      .|++++|+||+  +++|...++.+.. .|+++++++++..+.  +.+    +..|....   .|..+.. +.+       
T Consensus        19 ~~k~vlITGas~~~giG~~~a~~l~~-~G~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~   97 (267)
T 3gdg_A           19 KGKVVVVTGASGPKGMGIEAARGCAE-MGAAVAITYASRAQGAEENVKELEKTYGIKAKAYKCQVDSYESCEKLVKDVVA   97 (267)
T ss_dssp             TTCEEEETTCCSSSSHHHHHHHHHHH-TSCEEEECBSSSSSHHHHHHHHHHHHHCCCEECCBCCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCChHHHHHHHHHH-CCCeEEEEeCCcchhHHHHHHHHHHhcCCceeEEecCCCCHHHHHHHHHHHHH
Confidence            57899999998  8999987776656 499999888765432  222    23353322   1222211 111       


Q ss_pred             CCCCccEEEecCc
Q 016265          293 LPEKFDVVYDAIG  305 (392)
Q Consensus       293 ~~~~~D~vid~~G  305 (392)
                      ..+++|++|++.|
T Consensus        98 ~~g~id~li~nAg  110 (267)
T 3gdg_A           98 DFGQIDAFIANAG  110 (267)
T ss_dssp             HTSCCSEEEECCC
T ss_pred             HcCCCCEEEECCC
Confidence            1347899999977

>2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structura genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens}

Probab=94.13  E-value=0.063  Score=48.17  Aligned_cols=72  Identities=21%  Similarity=0.343  Sum_probs=48.2

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHH----hcCCcE-EE--eCCCCc-c----ccC----CC
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLK----SLGADL-AI--DYTKDN-F----EDL----PE  295 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~----~~G~~~-vi--~~~~~~-~----~~~----~~  295 (392)
                      .|+++||+||+|++|...++.+.. .|++|+++++++++.+.+.    +.|... .+  |..+.. +    .+.    .+
T Consensus         4 ~~k~vlVTGas~gIG~~ia~~l~~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~~g   82 (260)
T 2qq5_A            4 NGQVCVVTGASRGIGRGIALQLCK-AGATVYITGRHLDTLRVVAQEAQSLGGQCVPVVCDSSQESEVRSLFEQVDREQQG   82 (260)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHHHHSSEEEEEECCTTSHHHHHHHHHHHHHHHTT
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHHHHHcCCceEEEECCCCCHHHHHHHHHHHHHhcCC
Confidence            478999999999999998877766 4999999998877655432    224322 22  332221 1    111    34


Q ss_pred             CccEEEecC
Q 016265          296 KFDVVYDAI  304 (392)
Q Consensus       296 ~~D~vid~~  304 (392)
                      ++|++|++.
T Consensus        83 ~id~lvnnA   91 (260)
T 2qq5_A           83 RLDVLVNNA   91 (260)
T ss_dssp             CCCEEEECC
T ss_pred             CceEEEECC
Confidence            689999988

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}

Probab=94.12  E-value=0.14  Score=45.85  Aligned_cols=95  Identities=19%  Similarity=0.132  Sum_probs=62.8

Q ss_pred             HhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCCccccCCCCccEEEecCc
Q 016265          226 ERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFEDLPEKFDVVYDAIG  305 (392)
Q Consensus       226 ~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~~~~~~~D~vid~~G  305 (392)
                      ......++.+||=+| +| .|..+..+++  .+++++.++.++.-.+.+++..--.++..+-..+....+.||+|+....
T Consensus        28 ~~~~~~~~~~vLDiG-cG-~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~  103 (261)
T 3ege_A           28 NLLNLPKGSVIADIG-AG-TGGYSVALAN--QGLFVYAVEPSIVMRQQAVVHPQVEWFTGYAENLALPDKSVDGVISILA  103 (261)
T ss_dssp             HHHCCCTTCEEEEET-CT-TSHHHHHHHT--TTCEEEEECSCHHHHHSSCCCTTEEEECCCTTSCCSCTTCBSEEEEESC
T ss_pred             HHhCCCCCCEEEEEc-Cc-ccHHHHHHHh--CCCEEEEEeCCHHHHHHHHhccCCEEEECchhhCCCCCCCEeEEEEcch
Confidence            455678899999997 44 4888888887  3889999999886666554433111222221222212357999997532


Q ss_pred             ---------cHHHHHHhcccCCeEEEEcC
Q 016265          306 ---------QCDRAVKAIKEGGTVVALTG  325 (392)
Q Consensus       306 ---------~~~~~~~~l~~~G~iv~~g~  325 (392)
                               .+..+.++|+ ||+++.+..
T Consensus       104 l~~~~~~~~~l~~~~~~Lk-gG~~~~~~~  131 (261)
T 3ege_A          104 IHHFSHLEKSFQEMQRIIR-DGTIVLLTF  131 (261)
T ss_dssp             GGGCSSHHHHHHHHHHHBC-SSCEEEEEE
T ss_pred             HhhccCHHHHHHHHHHHhC-CcEEEEEEc
Confidence                     1578888999 998877643

>3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum}

Probab=94.09  E-value=0.14  Score=50.96  Aligned_cols=64  Identities=16%  Similarity=0.114  Sum_probs=46.4

Q ss_pred             CCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCCccccCCCCccEEEecCc
Q 016265          233 GKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFEDLPEKFDVVYDAIG  305 (392)
Q Consensus       233 g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~~~~~~~D~vid~~G  305 (392)
                      +.+|||+||+|.+|...+..+.. .|.+|++++++..+.+       ....|..+ ...+..+++|+||.+.+
T Consensus       147 ~m~VLVTGatG~IG~~l~~~L~~-~G~~V~~l~R~~~~~~-------~v~~d~~~-~~~~~l~~~D~Vih~A~  210 (516)
T 3oh8_A          147 PLTVAITGSRGLVGRALTAQLQT-GGHEVIQLVRKEPKPG-------KRFWDPLN-PASDLLDGADVLVHLAG  210 (516)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHH-TTCEEEEEESSSCCTT-------CEECCTTS-CCTTTTTTCSEEEECCC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHH-CCCEEEEEECCCCCcc-------ceeecccc-hhHHhcCCCCEEEECCC
Confidence            67999999999999999888877 4999999998766532       11222222 22334468999999876

>4iiu_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAP; 2.10A {Escherichia coli} PDB: 4iiv_A*

Probab=94.07  E-value=0.1  Score=46.92  Aligned_cols=73  Identities=15%  Similarity=0.178  Sum_probs=45.4

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEe-CCcccHHH----HHhcCCc-EEE--eCCCCc-ccc-------CCC
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAAT-SSTRNLEF----LKSLGAD-LAI--DYTKDN-FED-------LPE  295 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~-~~~~~~~~----~~~~G~~-~vi--~~~~~~-~~~-------~~~  295 (392)
                      .+.+|||+||+|++|...++.+.. .|++|++.. ++.++.+.    +++.+.. .++  |..+.. +.+       ...
T Consensus        25 ~~k~vlVTGas~gIG~~la~~l~~-~G~~v~i~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g  103 (267)
T 4iiu_A           25 MSRSVLVTGASKGIGRAIARQLAA-DGFNIGVHYHRDAAGAQETLNAIVANGGNGRLLSFDVANREQCREVLEHEIAQHG  103 (267)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHH-TTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHC
T ss_pred             CCCEEEEECCCChHHHHHHHHHHH-CCCEEEEEeCCchHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHhC
Confidence            467999999999999998777666 499987765 45444332    2333433 222  222211 111       123


Q ss_pred             CccEEEecCc
Q 016265          296 KFDVVYDAIG  305 (392)
Q Consensus       296 ~~D~vid~~G  305 (392)
                      ++|++|++.|
T Consensus       104 ~id~li~nAg  113 (267)
T 4iiu_A          104 AWYGVVSNAG  113 (267)
T ss_dssp             CCSEEEECCC
T ss_pred             CccEEEECCC
Confidence            7899999876

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=94.03  E-value=0.088  Score=45.54  Aligned_cols=93  Identities=17%  Similarity=0.195  Sum_probs=64.4

Q ss_pred             CCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCCcc---c-cCCCCccEEEecC
Q 016265          229 GFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNF---E-DLPEKFDVVYDAI  304 (392)
Q Consensus       229 ~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~---~-~~~~~~D~vid~~  304 (392)
                      ...++.+||=+| +| .|..+..+++.  |++++.++.++.-++.+++.+...++..+-.+.   . .....||+|+...
T Consensus        49 ~~~~~~~vLdiG-~G-~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~~  124 (227)
T 3e8s_A           49 LGRQPERVLDLG-CG-EGWLLRALADR--GIEAVGVDGDRTLVDAARAAGAGEVHLASYAQLAEAKVPVGKDYDLICANF  124 (227)
T ss_dssp             HHTCCSEEEEET-CT-TCHHHHHHHTT--TCEEEEEESCHHHHHHHHHTCSSCEEECCHHHHHTTCSCCCCCEEEEEEES
T ss_pred             hcCCCCEEEEeC-CC-CCHHHHHHHHC--CCEEEEEcCCHHHHHHHHHhcccccchhhHHhhcccccccCCCccEEEECc
Confidence            345678999997 44 47888888864  889999999999888888775433333222222   1 1123599998653


Q ss_pred             c--------cHHHHHHhcccCCeEEEEcC
Q 016265          305 G--------QCDRAVKAIKEGGTVVALTG  325 (392)
Q Consensus       305 G--------~~~~~~~~l~~~G~iv~~g~  325 (392)
                      .        .+..+.+.|++||+++....
T Consensus       125 ~l~~~~~~~~l~~~~~~L~pgG~l~~~~~  153 (227)
T 3e8s_A          125 ALLHQDIIELLSAMRTLLVPGGALVIQTL  153 (227)
T ss_dssp             CCCSSCCHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             hhhhhhHHHHHHHHHHHhCCCeEEEEEec
Confidence            2        25788899999999987643

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	392
d1llua1	175	b.35.1.2 (A:2-143,A:310-342) Alcohol dehydrogenase	3e-25
d1xa0a1	152	b.35.1.2 (A:1-118,A:295-328) B. subtilis YhfP homo	2e-24
d1tt7a1	162	b.35.1.2 (A:2-127,A:295-330) Hypothetical protein	3e-22
d1e3ja1	178	b.35.1.2 (A:4-142,A:313-351) Ketose reductase (sor	4e-22
d1yb5a1	150	b.35.1.2 (A:6-120,A:295-329) Quinone oxidoreductas	5e-21
d1jvba1	177	b.35.1.2 (A:1-143,A:314-347) Alcohol dehydrogenase	3e-19
d1pl8a1	185	b.35.1.2 (A:1-145,A:317-356) Ketose reductase (sor	9e-19
d1o89a1	146	b.35.1.2 (A:1-115,A:293-323) Hypothetical protein	3e-18
d2fzwa1	197	b.35.1.2 (A:1-162,A:339-373) Alcohol dehydrogenase	2e-17
d1piwa1	192	b.35.1.2 (A:1-152,A:321-360) Cinnamyl alcohol dehy	3e-17
d1iz0a1	131	b.35.1.2 (A:1-98,A:270-302) Quinone oxidoreductase	8e-17
d1cdoa1	199	b.35.1.2 (A:1-164,A:340-374) Alcohol dehydrogenase	1e-15
d1gu7a1	175	b.35.1.2 (A:23-160,A:350-386) 2,4-dienoyl-CoA redu	3e-15
d1kola1	201	b.35.1.2 (A:2-160,A:356-397) Formaldehyde dehydrog	5e-15
d1rjwa1	171	b.35.1.2 (A:1-137,A:306-339) Alcohol dehydrogenase	1e-14
d1e3ia1	202	b.35.1.2 (A:1-167,A:342-376) Alcohol dehydrogenase	2e-14
d1qora1	147	b.35.1.2 (A:2-112,A:292-327) Quinone oxidoreductas	5e-14
d1f8fa1	194	b.35.1.2 (A:4-162,A:337-371) Benzyl alcohol dehydr	9e-13
d1vj0a1	184	b.35.1.2 (A:2-155,A:338-367) Hypothetical protein	1e-12
d1gu7a2	189	c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yea	1e-12
d1h2ba2	172	c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeo	2e-11
d1h2ba1	171	b.35.1.2 (A:17-154,A:327-359) Alcohol dehydrogenas	3e-11
d1o8ca2	77	c.2.1.1 (A:116-192) Hypothetical protein YhdH {Esc	3e-11
d2jhfa1	198	b.35.1.2 (A:1-163,A:340-374) Alcohol dehydrogenase	3e-11
d1jvba2	170	c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeo	6e-11
d1p0fa1	198	b.35.1.2 (A:1001-1163,A:1338-1372) Alcohol dehydro	2e-10
d1uufa2	168	c.2.1.1 (A:145-312) Hypothetical protein YahK {Esc	3e-10
d1xa0a2	176	c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Ba	7e-10
d1jqba1	177	b.35.1.2 (A:1001-1139,A:1314-1351) Bacterial secon	2e-09
d1kola2	195	c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Ps	5e-09
d1jqba2	174	c.2.1.1 (A:1140-1313) Bacterial secondary alcohol	8e-09
d1qora2	179	c.2.1.1 (A:113-291) Quinone oxidoreductase {Escher	9e-09
d1llua2	166	c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudom	5e-08
d1tt7a2	167	c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bac	3e-07
d1iz0a2	171	c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus	3e-07
d1uufa1	179	b.35.1.2 (A:3-144,A:313-349) Hypothetical protein	3e-07
d2fzwa2	176	c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (	3e-07
d1pl8a2	171	c.2.1.1 (A:146-316) Ketose reductase (sorbitol deh	3e-07
d1o89a2	177	c.2.1.1 (A:116-292) Hypothetical protein YhdH {Esc	5e-07
d1pqwa_	183	c.2.1.1 (A:) Putative enoyl reductase domain of po	7e-07
d2jhfa2	176	c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (	8e-07
d1f8fa2	174	c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {	1e-06
d1piwa2	168	c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase	2e-06
d1vj0a2	182	c.2.1.1 (A:156-337) Hypothetical protein TM0436 {T	3e-06
d1p0fa2	174	c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog	3e-06
d1e3ja2	170	c.2.1.1 (A:143-312) Ketose reductase (sorbitol deh	4e-06
d1cdoa2	175	c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Ga	6e-06
d1rjwa2	168	c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillu	8e-06
d1d1ta2	176	c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (	4e-05
d1yb5a2	174	c.2.1.1 (A:121-294) Quinone oxidoreductase {Human	5e-05
d1vj1a2	187	c.2.1.1 (A:125-311) Putative zinc-binding alcohol	5e-04
d1e3ia2	174	c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (	0.001
d1v3va2	182	c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehyd	0.002
d1o5ia_	234	c.2.1.2 (A:) beta-keto acyl carrier protein reduct	0.004

>d1llua1 b.35.1.2 (A:2-143,A:310-342) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} Length = 175

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 98.8 bits (245), Expect = 3e-25
 Identities = 44/180 (24%), Positives = 68/180 (37%), Gaps = 24/180 (13%)

Query: 79  TVPSEMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKAT 138
           T+P  MKA +   YG    +   E+V VP     QVL+K+ A+ +   D    +G +   
Sbjct: 1   TLPQTMKAAVVHAYGAPLRI---EEVKVPLPGPGQVLVKIEASGVCHTDLHAAEGDWPVK 57

Query: 139 DSPLPTVPGYDVAGVVVKVGTQVKEFKEGDEVYGDINEKALEGPKQFGS----------- 187
               P +PG++  G V  VG+ V   KEGD V       A    +   +           
Sbjct: 58  PPL-PFIPGHEGVGYVAAVGSGVTRVKEGDRVGIPWLYTACGCCEHCLTGWETLCESQQN 116

Query: 188 --------LAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLERTGFSAGKSILVL 239
                    AEY   +   +   PKN+      G    I    + + R G   G+ +L +
Sbjct: 117 TGYSVNGGYAEYVLADPNYVGILPKNVKATIHPGKLDDINQILDQM-RAGQIEGRIVLEM 175

>d1xa0a1 b.35.1.2 (A:1-118,A:295-328) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} Length = 152

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 95.7 bits (237), Expect = 2e-24
 Identities = 34/158 (21%), Positives = 59/158 (37%), Gaps = 8/158 (5%)

Query: 82  SEMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSP 141
           S  +A++  +            +++  + E  VL++V  +++N  DG             
Sbjct: 2   SAFQAFVVNKTETEFTAGVQT-ISMDDLPEGDVLVRVHYSSVNYKDGLASIPDG---KIV 57

Query: 142 LPTVPGYDVAGVVVKVGTQVKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAP 201
                   +    V V +Q   F+EGDEV     E  +     FG  +EY  +    L P
Sbjct: 58  KTYPFVPGIDLAGVVVSSQHPRFREGDEVIATGYEIGV---THFGGYSEYARLHGEWLVP 114

Query: 202 KPKNLDFVQAAGLPLAIETAYEGLERTGFSAGKSILVL 239
            PK L+   A  + LA           G   G++++ L
Sbjct: 115 LPKGLER-IAQEISLAELPQALKRILRGELRGRTVVRL 151

>d1tt7a1 b.35.1.2 (A:2-127,A:295-330) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} Length = 162

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

 Score = 90.3 bits (223), Expect = 3e-22
 Identities = 34/169 (20%), Positives = 56/169 (33%), Gaps = 10/169 (5%)

Query: 84  MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLP 143
            +A    +      +     ++   + +D VLIKV  + +N  DG   +           
Sbjct: 4   FQALQAEKNADDVSVHVKT-ISTEDLPKDGVLIKVAYSGINYKDGLAGKAGGNIVREYPL 62

Query: 144 TVPGYDVAGVVVKVGTQVKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKP 203
            +       VV     +  E  E      ++         + G L+EY +V    L P P
Sbjct: 63  ILGIDAAGTVVSSNDPRFAEGDEVIATSYELG------VSRDGGLSEYASVPGDWLVPLP 116

Query: 204 KNLDFVQAAGLPLAIETAYEGLERTGFSAGKSILVLNGSGGVGSLVIQL 252
           +NL   +A    L      E        A K IL     G V   +++L
Sbjct: 117 QNLSLKEAMVDQLLTIVDREVSLEETPGALKDILQNRIQGRV---IVKL 162

>d1e3ja1 b.35.1.2 (A:4-142,A:313-351) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} Length = 178

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

 Score = 90.4 bits (223), Expect = 4e-22
 Identities = 39/178 (21%), Positives = 63/178 (35%), Gaps = 25/178 (14%)

Query: 84  MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGK-RRQGKFKATDSPL 142
           + A LY      + L+ ++   +P+ KED+VL+++    +   D      G+        
Sbjct: 3   LSAVLYK----QNDLRLEQ-RPIPEPKEDEVLLQMAYVGICGSDVHYYEHGRIADFIVKD 57

Query: 143 PTVPGYDVAGVVVKVGTQVKEFKEGDEVYGDINEKALEGPKQF----------------- 185
           P V G++ +G VVKVG  VK  K+GD V  +                             
Sbjct: 58  PMVIGHEASGTVVKVGKNVKHLKKGDRVAVEPGVPCRRCQFCKEGKYNLCPDLTFCATPP 117

Query: 186 --GSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLERTGFSAGKSILVLNG 241
             G+LA Y           P N +  Q       +E   +  E     A  +I V+  
Sbjct: 118 DDGNLARYYVHAADFCHKLPDNCNVKQLVTHSFKLEQTVDAFEAARKKADNTIKVMIS 175

>d1yb5a1 b.35.1.2 (A:6-120,A:295-329) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} Length = 150

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 86.3 bits (212), Expect = 5e-21
 Identities = 53/169 (31%), Positives = 74/169 (43%), Gaps = 21/169 (12%)

Query: 84  MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLP 143
           M+A    E+GG +VLK    + VP  K+ QVLIKV A  +NPV+   R G +      LP
Sbjct: 3   MRAVRVFEFGGPEVLKLRSDIAVPIPKDHQVLIKVHACGVNPVETYIRSGTYS-RKPLLP 61

Query: 144 TVPGYDVAGVVVKVGTQVKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKP 203
             PG DVAGV+  VG     FK+GD V+              G  AEY    +  +   P
Sbjct: 62  YTPGSDVAGVIEAVGDNASAFKKGDRVFTSST--------ISGGYAEYALAADHTVYKLP 113

Query: 204 KNLDFVQAAGLPLAIETAYEGLERTGFSAGKSILVLNGSGGVGSLVIQL 252
           + L  V  +  PL                     +++GSG  G +++ L
Sbjct: 114 EKLKPVIGSQYPLEKVAEAHE------------NIIHGSGATGKMILLL 150

>d1jvba1 b.35.1.2 (A:1-143,A:314-347) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 177

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

 Score = 82.3 bits (202), Expect = 3e-19
 Identities = 45/180 (25%), Positives = 72/180 (40%), Gaps = 29/180 (16%)

Query: 84  MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDS--- 140
           M+A    E G    L   +++ VP+ K  QVLIKV AA +   D   RQG+F        
Sbjct: 1   MRAVRLVEIGKPLSL---QEIGVPKPKGPQVLIKVEAAGVCHSDVHMRQGRFGNLRIVED 57

Query: 141 ---PLPTVPGYDVAGVVVKVGTQVKEFKEGDEVYGDINEKALE----------------- 180
               LP   G+++AG + +VG +V  + +GD V  +  +                     
Sbjct: 58  LGVKLPVTLGHEIAGKIEEVGDEVVGYSKGDLVAVNPWQGEGNCYYCRIGEEHLCDSPRW 117

Query: 181 -GPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPL-AIETAYEGLERTGFSAGKSILV 238
            G    G+ AEY  V       K + +  +    + L     A + LE    + G+ +L+
Sbjct: 118 LGINFDGAYAEYVIVPHYKYMYKLRRVKPMITKTMKLEEANEAIDNLENFK-AIGRQVLI 176

>d1pl8a1 b.35.1.2 (A:1-145,A:317-356) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} Length = 185

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.5 bits (200), Expect = 9e-19
 Identities = 34/184 (18%), Positives = 61/184 (33%), Gaps = 27/184 (14%)

Query: 81  PSEMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGK-RRQGKFKATD 139
           P+ +   ++G       L+ +    +P+   ++VL+++ +  +   D      G+     
Sbjct: 6   PNNLSLVVHG----PGDLRLEN-YPIPEPGPNEVLLRMHSVGICGSDVHYWEYGRIGNFI 60

Query: 140 SPLPTVPGYDVAGVVVKVGTQVKEFKEGDEVYG-------------------DINEKALE 180
              P V G++ +G V KVG+ VK  K GD V                       +     
Sbjct: 61  VKKPMVLGHEASGTVEKVGSSVKHLKPGDRVAIEPGAPRENDEFCKMGRYNLSPSIFFCA 120

Query: 181 GPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLERTGFSAGKSILVLN 240
            P   G+L  +           P N+  +     PL    A E  E      G  I++  
Sbjct: 121 TPPDDGNLCRFYKHNAAFCYKLPDNVKPLVTHRFPLE--KALEAFETFKKGLGLKIMLKC 178

Query: 241 GSGG 244
               
Sbjct: 179 DPSD 182

>d1o89a1 b.35.1.2 (A:1-115,A:293-323) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} Length = 146

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

 Score = 78.8 bits (193), Expect = 3e-18
 Identities = 31/138 (22%), Positives = 50/138 (36%), Gaps = 7/138 (5%)

Query: 84  MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLP 143
           ++A L  +  G  +      +   ++ E  V + V  ++LN  D     GK K   +  P
Sbjct: 1   LQALLLEQQDGKTLASVQT-LDESRLPEGDVTVDVHWSSLNYKDALAITGKGKIIRNF-P 58

Query: 144 TVPGYDVAGVVVKVGTQVKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKP 203
            +PG D AG V     +   F  G EV   +      G   +G LAE   V+   L   P
Sbjct: 59  MIPGIDFAGTVRTS--EDPRFHAGQEV---LLTGWGVGENHWGGLAEQARVKGDWLVAMP 113

Query: 204 KNLDFVQAAGLPLAIETA 221
           +     + +         
Sbjct: 114 QGQAAKEISLSEAPNFAE 131

>d2fzwa1 b.35.1.2 (A:1-162,A:339-373) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} Length = 197

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

 Score = 78.0 bits (191), Expect = 2e-17
 Identities = 34/196 (17%), Positives = 62/196 (31%), Gaps = 45/196 (22%)

Query: 84  MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLP 143
            KA +  E G    +   E++ V   K  +V IK++A A+   D     G       P+ 
Sbjct: 7   CKAAVAWEAGKPLSI---EEIEVAPPKAHEVRIKIIATAVCHTDAYTLSGADPEGCFPVI 63

Query: 144 TVPGYDVAGVVVKVGTQVKEFKEGDEVYGDINEKALEGPKQF------------------ 185
              G+  AG+V  VG  V + K GD V      +  E                       
Sbjct: 64  --LGHLGAGIVESVGEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKGL 121

Query: 186 ---------------------GSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEG 224
                                 + +EYT V +  +A     +   +     L+ +   + 
Sbjct: 122 MPDGTSRFTCKGKTILHYMGTSTFSEYTVVADISVAKIDPLIKVDEFVTHNLSFDEINKA 181

Query: 225 LERTGF-SAGKSILVL 239
            E      + ++++ +
Sbjct: 182 FELMHSGKSIRTVVKI 197

>d1piwa1 b.35.1.2 (A:1-152,A:321-360) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 192

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 77.2 bits (189), Expect = 3e-17
 Identities = 27/187 (14%), Positives = 57/187 (30%), Gaps = 30/187 (16%)

Query: 79  TVPSEMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKAT 138
           + P + +      +      K  +        +  + IK+ A  +   D     G +   
Sbjct: 2   SYPEKFEGIAIQSHEDWKNPKKTK-YDPKPFYDHDIDIKIEACGVCGSDIHCAAGHWG-- 58

Query: 139 DSPLPTVPGYDVAGVVVKVGTQVKEFKEGDEVYGDINEKALEG----------------- 181
           +  +P V G+++ G VVK+G +     +  +  G   +                      
Sbjct: 59  NMKMPLVVGHEIVGKVVKLGPKSNSGLKVGQRVGVGAQVFSCLECDRCKNDNEPYCTKFV 118

Query: 182 ----------PKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLERTGFS 231
                         G  A Y  V E  + P P+N+           +  A+E +E+    
Sbjct: 119 TTYSQPYEDGYVSQGGYANYVRVHEHFVVPIPENIWVETLPVGEAGVHEAFERMEKGDVR 178

Query: 232 AGKSILV 238
              +++ 
Sbjct: 179 YRFTLVG 185

>d1iz0a1 b.35.1.2 (A:1-98,A:270-302) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} Length = 131

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

 Score = 74.1 bits (181), Expect = 8e-17
 Identities = 41/156 (26%), Positives = 59/156 (37%), Gaps = 25/156 (16%)

Query: 84  MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLP 143
           MKAW+    GG   L     +  P+ +E +V+++V A  LN  D   R G +     P P
Sbjct: 1   MKAWVLKRLGGPLEL---VDLPEPEAEEGEVVLRVEAVGLNFADHLMRLGAYLTRLHP-P 56

Query: 144 TVPGYDVAGVVVKVGTQVKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKP 203
            +PG +V GV                    +  +        G LAE  AV +  L P P
Sbjct: 57  FIPGMEVVGV--------------------VEGRRYAALVPQGGLAERVAVPKGALLPLP 96

Query: 204 KNLDFVQAAGLPLAIETAYEGLERTGFSAGKSILVL 239
           +    V         E A+  L   G   GK ++ L
Sbjct: 97  EGRPVVGPVFPFAEAEAAFRALLDRG-HTGKVVVRL 131

>d1cdoa1 b.35.1.2 (A:1-164,A:340-374) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} Length = 199

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

 Score = 72.6 bits (177), Expect = 1e-15
 Identities = 30/196 (15%), Positives = 65/196 (33%), Gaps = 45/196 (22%)

Query: 84  MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLP 143
            KA +  E     V+   E++ V     +++ IK++A  +   D             P  
Sbjct: 9   CKAAVAWEANKPLVI---EEIEVDVPHANEIRIKIIATGVCHTDLYHLFEGKHKDGFP-- 63

Query: 144 TVPGYDVAGVVVKVGTQVKEFKEGDEVYG------------------------------- 172
            V G++ AG+V  VG  V EF+ G++V                                 
Sbjct: 64  VVLGHEGAGIVESVGPGVTEFQPGEKVIPLFISQCGECRFCQSPKTNQCVKGWANESPDV 123

Query: 173 --------DINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEG 224
                       + +       + ++YT V +  +A    ++   +     + +E+  + 
Sbjct: 124 MSPKETRFTCKGRKVLQFLGTSTFSQYTVVNQIAVAKIDPSVKLDEFITHRMPLESVNDA 183

Query: 225 LERTG-FSAGKSILVL 239
           ++        +++L L
Sbjct: 184 IDLMKHGKCIRTVLSL 199

>d1gu7a1 b.35.1.2 (A:23-160,A:350-386) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]} Length = 175

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

 Score = 71.0 bits (172), Expect = 3e-15
 Identities = 24/173 (13%), Positives = 54/173 (31%), Gaps = 7/173 (4%)

Query: 84  MKAWLYGEYGG-VDVLKF-DEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSP 141
            +A LY ++G   DVL     ++    +  ++V++K + + +NP D  + QG + +  + 
Sbjct: 4   AQAVLYTQHGEPKDVLFTQSFEIDDDNLAPNEVIVKTLGSPVNPSDINQIQGVYPSKPAK 63

Query: 142 LPTVPGYDVAGVVVKVGTQVKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAP 201
                  + A      G         +    +  +  +     FG+   +    +     
Sbjct: 64  TTGFGTTEPAAPCGNEGLFEVIKVGSNVSSLEAGDWVIPSHVNFGTWRTHALGNDDDFIK 123

Query: 202 KPKNLDFVQAAGLPLAIETAYEGL--ERTGFSAGKSILVLN-GSGGVGSLVIQ 251
            P        A       T  + +     G      +      +   G  +I 
Sbjct: 124 LPNP--AQSKANGKPNGLTDAKSIETLYDGTKPLHELYQDGVANSKDGKQLIT 174

>d1kola1 b.35.1.2 (A:2-160,A:356-397) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} Length = 201

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

 Score = 71.1 bits (173), Expect = 5e-15
 Identities = 33/206 (16%), Positives = 57/206 (27%), Gaps = 36/206 (17%)

Query: 84  MKAWLYGEYGGVDVLKFDE---KVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKA--- 137
            +  +Y   G V+V K D    +    +  E  V++KVV+  +   D    +G+  A   
Sbjct: 2   NRGVVYLGSGKVEVQKIDYPKMQDPRGKKIEHGVILKVVSTNICGSDQHMVRGRTTAQVG 61

Query: 138 --------------TDSPLPTVPGYDVAGVVVKVGTQVKEFKEGDE--------VYGDIN 175
                                  G  V+        + +  KE                 
Sbjct: 62  LVLGHEITGEVIEKGRDVENLQIGDLVSVPFNVACGRCRSCKEMHTGVCLTVNPARAGGA 121

Query: 176 EKALEGPKQFGSLAEYTAV--EERLLAPKPKNLDFVQAAGLPLAIETAYEGLERTGFSAG 233
              ++     G  AEY  V   +  L   P     ++   +   +      L+      G
Sbjct: 122 YGYVDMGDWTGGQAEYVLVPYADFNLLKLPDRDKAMEKINIAEVVGVQVISLDDAPRGYG 181

Query: 234 KSILVLNGSGGVGSLVIQLAKQVFGA 259
           +       +G     VI   K  F A
Sbjct: 182 EF-----DAGVPKKFVIDPHK-TFSA 201

>d1rjwa1 b.35.1.2 (A:1-137,A:306-339) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 171

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 69.2 bits (168), Expect = 1e-14
 Identities = 33/175 (18%), Positives = 59/175 (33%), Gaps = 26/175 (14%)

Query: 84  MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLP 143
           MKA +  ++     +   ++V  P +   +VL+++ A  +   D              LP
Sbjct: 1   MKAAVVEQFKEPLKI---KEVEKPTISYGEVLVRIKACGVCHTDLHAAH-GDWPVKPKLP 56

Query: 144 TVPGYDVAGVVVKVGTQVKEFKEGDEV-------------------YGDINEKALEGPKQ 184
            +PG++  G+V +VG  V   K GD V                         +   G   
Sbjct: 57  LIPGHEGVGIVEEVGPGVTHLKVGDRVGIPWLYSACGHCDYCLSGQETLCEHQKNAGYSV 116

Query: 185 FGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLERTGFSAGKSILVL 239
            G  AEY       +   P N          +     ++ + + G   G+ +L L
Sbjct: 117 DGGYAEYCRAAADYVVKIPDNTIIEVQPLEKIN--EVFDRMLK-GQINGRVVLTL 168

>d1e3ia1 b.35.1.2 (A:1-167,A:342-376) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} Length = 202

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

 Score = 69.5 bits (169), Expect = 2e-14
 Identities = 43/199 (21%), Positives = 66/199 (33%), Gaps = 51/199 (25%)

Query: 84  MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLP 143
            KA +  + G    +   E++ V   K  +V I+V+A  + P D      K KA     P
Sbjct: 9   CKAAIAWKTGSPLCI---EEIEVSPPKACEVRIQVIATCVCPTDINATDPKKKALF---P 62

Query: 144 TVPGYDVAGVVVKVGTQVKEFKEGDEVYG------------------------------- 172
            V G++ AG+V  VG  V  FK GD+V                                 
Sbjct: 63  VVLGHECAGIVESVGPGVTNFKPGDKVIPFFAPQCKRCKLCLSPLTNLCGKLRNFKYPTI 122

Query: 173 ------------DINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIET 220
                           +++       S ++YT V E  LA      D        L  E+
Sbjct: 123 DQELMEDRTSRFTCKGRSIYHFMGVSSFSQYTVVSEANLARVDDEFDLDLLVTHALPFES 182

Query: 221 AYEGLERTGFSAGKSILVL 239
             + ++      GKSI  +
Sbjct: 183 INDAIDL--MKEGKSIRTI 199

>d1qora1 b.35.1.2 (A:2-112,A:292-327) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} Length = 147

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

 Score = 66.6 bits (161), Expect = 5e-14
 Identities = 24/152 (15%), Positives = 50/152 (32%), Gaps = 13/152 (8%)

Query: 89  YGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGY 148
           + ++GG +VL+  E  T     E+++ ++  A  +N +D   R G +     P       
Sbjct: 6   FHKHGGPEVLQAVE-FTPADPAENEIQVENKAIGINFIDTYIRSGLYPPPSLPSGLGTEA 64

Query: 149 DVAGVVVKVGTQVKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNL-- 206
                 V  G +  +  +                   G+ +    +     A  P  +  
Sbjct: 65  AGIVSKVGSGVKHIKAGDRVVYAQS----------ALGAYSSVHNIIADKAAILPAAIKV 114

Query: 207 DFVQAAGLPLAIETAYEGLERTGFSAGKSILV 238
           D  +    PL        +  +  + G S+L+
Sbjct: 115 DVAEQQKYPLKDAQRAHEILESRATQGSSLLI 146

>d1f8fa1 b.35.1.2 (A:4-162,A:337-371) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} Length = 194

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

 Score = 64.2 bits (155), Expect = 9e-13
 Identities = 35/224 (15%), Positives = 59/224 (26%), Gaps = 72/224 (32%)

Query: 83  EMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPL 142
           ++ A +    G    L   + + + Q + D+VL+KVVA  +   D   R  K+     PL
Sbjct: 3   DIIAAVTPCKGADFEL---QALKIRQPQGDEVLVKVVATGMCHTDLIVRDQKY---PVPL 56

Query: 143 PTVPGYDVAGVVVKVGTQVKEFKEGDEV-------------------------------- 170
           P V G++ +G++  +G  V E + GD V                                
Sbjct: 57  PAVLGHEGSGIIEAIGPNVTELQVGDHVVLSYGYCGKCTQCNTGNPAYCSEFFGRNFSGA 116

Query: 171 --------YGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAY 222
                            +      S A Y    E       K+  F Q            
Sbjct: 117 DSEGNHALCTHDQGVVNDHFFAQSSFATYALSRENNTVKVTKDFPFDQLV---------- 166

Query: 223 EGLERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATS 266
                                 +    I   K +     +   +
Sbjct: 167 ---------------KFYAFDEINQAAIDSRKGI-TLKPIIKIA 194

>d1vj0a1 b.35.1.2 (A:2-155,A:338-367) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} Length = 184

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

 Score = 63.7 bits (154), Expect = 1e-12
 Identities = 26/187 (13%), Positives = 58/187 (31%), Gaps = 42/187 (22%)

Query: 84  MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLP 143
             A +  ++    V    ++  +  +    +L+++++A +   D    +G+      P+ 
Sbjct: 5   AHAMVLEKFNQPLVY---KEFEISDIPRGSILVEILSAGVCGSDVHMFRGEDPRVPLPII 61

Query: 144 -----TVPGYDVAGVVVKVGTQVKEF------------------KEGDE--------VYG 172
                     +V G    +  ++ +                   K   E        VYG
Sbjct: 62  LGHEGAGRVVEVNGEKRDLNGELLKPGDLIVWNRGITCGECYWCKVSKEPYLCPNRKVYG 121

Query: 173 DINEKALEGPKQFGSLAEYTAV-EERLLAPKPKNLDFVQAAGLPLAIETAYEGLERTGFS 231
            IN    E P   G  + +  +  E  +    + +       LPL    A + LE     
Sbjct: 122 -INRGCSEYPHLRGCYSSHIVLDPETDVLKVSEKITHR----LPLK--EANKALELMESR 174

Query: 232 AGKSILV 238
               +++
Sbjct: 175 EALKVIL 181

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]} Length = 189

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

 Score = 63.9 bits (154), Expect = 1e-12
 Identities = 30/189 (15%), Positives = 54/189 (28%), Gaps = 40/189 (21%)

Query: 206 LDFVQAAGLPLAIETAYEGLERTG-FSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAA 264
           L   Q A + +   TAY  L      + GK   + NG             ++   + ++ 
Sbjct: 1   LTINQGATISVNPLTAYLMLTHYVKLTPGKDWFIQNGGTSAVGKYASQIGKLLNFNSISV 60

Query: 265 TSSTRNLEFL----KSLGADLAIDYTKDNFEDLPEKF-----------DVVYDAIG--QC 307
                NL+ +    K LGA   I   ++N  +                 +  + +G    
Sbjct: 61  IRDRPNLDEVVASLKELGATQVITEDQNNSREFGPTIKEWIKQSGGEAKLALNCVGGKSS 120

Query: 308 DRAVKAIKEGGTVVALTGAVTPPGFR--------------FVVTS--------NGEVLKK 345
               + +   G ++   G    P                 F VT             L +
Sbjct: 121 TGIARKLNNNGLMLTYGGMSFQPVTIPTSLYIFKNFTSAGFWVTELLKNNKELKTSTLNQ 180

Query: 346 LNPYLESGK 354
           +  + E GK
Sbjct: 181 IIAWYEEGK 189

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} Length = 172

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

 Score = 60.0 bits (144), Expect = 2e-11
 Identities = 29/127 (22%), Positives = 52/127 (40%), Gaps = 11/127 (8%)

Query: 205 NLDFVQAAGLPLAIETAYEGLERTG--FSAGKSILVLNGSGGVGSLVIQLAKQVFGASRV 262
               V+ A L  A  TAY  +++       G  + +  G GG+G + +QL K +  A+ +
Sbjct: 3   REKLVEMAPLADAGITAYRAVKKAARTLYPGAYVAI-VGVGGLGHIAVQLLKVMTPATVI 61

Query: 263 AATSSTRNLEFLKSLGADLAIDYTKDNFEDL-----PEKFDVVYDAIG---QCDRAVKAI 314
           A       L+  + LGAD  +D  +D  + +         +V  D +G     D     +
Sbjct: 62  ALDVKEEKLKLAERLGADHVVDARRDPVKQVMELTRGRGVNVAMDFVGSQATVDYTPYLL 121

Query: 315 KEGGTVV 321
              G ++
Sbjct: 122 GRMGRLI 128

>d1h2ba1 b.35.1.2 (A:17-154,A:327-359) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} Length = 171

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

 Score = 59.3 bits (142), Expect = 3e-11
 Identities = 31/174 (17%), Positives = 55/174 (31%), Gaps = 24/174 (13%)

Query: 85  KAWLYGEYGGVDVLKFDEKVTVPQVK-EDQVLIKVVAAALNPVDGKRRQGKFKATDSPLP 143
           KA    EY     +   E V  P+++    V++++  A +   D    QG +     P  
Sbjct: 1   KAARLHEYNKPLRI---EDVDYPRLEGRFDVIVRIAGAGVCHTDLHLVQGMWHELLQPKL 57

Query: 144 TVPGYDVAGVVVKVGT-QVKEFKEGDEV------------------YGDINEKALEGPKQ 184
                      ++     V+  ++GD V                            G   
Sbjct: 58  PYTLGHENVGYIEEVAEGVEGLEKGDPVILHPAVTDGTCLACRAGEDMHCENLEFPGLNI 117

Query: 185 FGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLERTGFSAGKSILV 238
            G  AE+     R +   PK++           I    E LE+ G   G+++L+
Sbjct: 118 DGGFAEFMRTSHRSVIKLPKDVRVEVDIHKLDEINDVLERLEK-GEVLGRAVLI 170

>d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} Length = 77

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

 Score = 56.9 bits (137), Expect = 3e-11
 Identities = 25/78 (32%), Positives = 34/78 (43%), Gaps = 5/78 (6%)

Query: 206 LDFVQAAGLPLAIETAYEGLERTGFS----AGKSILVLNGSGGVGSLVIQLAKQVFGASR 261
           LD  +A  +  A  TA   +     +        I+V   SGGVGS  + L  +  G   
Sbjct: 1   LDARKAMIIGTAGFTAMLCVMALEDAGVRPQDGEIVVTGASGGVGSTAVALLHK-LGYQV 59

Query: 262 VAATSSTRNLEFLKSLGA 279
           VA +      E+LKSLGA
Sbjct: 60  VAVSGRESTHEYLKSLGA 77

>d2jhfa1 b.35.1.2 (A:1-163,A:340-374) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} Length = 198

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

 Score = 59.9 bits (144), Expect = 3e-11
 Identities = 41/210 (19%), Positives = 65/210 (30%), Gaps = 54/210 (25%)

Query: 69  STEAEPTKVGTVPSEMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDG 128
           ST  +  K        KA +  E      +   E+V V   K  +V IK+VA  +   D 
Sbjct: 1   STAGKVIK-------CKAAVLWEEKKPFSI---EEVEVAPPKAHEVRIKMVATGICRSDD 50

Query: 129 KRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKEFKEGDEVYGDINEKALEGPKQF--- 185
               G       PLP + G++ AG+V  +G  V   + GD+V      +  +        
Sbjct: 51  HVVSGTLVT---PLPVIAGHEAAGIVESIGEGVTTVRPGDKVIPLFTPQCGKCRVCKHPE 107

Query: 186 ------------------------------------GSLAEYTAVEERLLAPKPKNLDFV 209
                                                + ++YT V+E  +A         
Sbjct: 108 GNFCLKNDLSMPRGTMQDGTSRFTCRGKPIHHFLGTSTFSQYTVVDEISVAKIDAAFALD 167

Query: 210 QAAGLPLAIETAYEGLERTGFSAGKSILVL 239
                 L  E   EG       +G+SI  +
Sbjct: 168 PLITHVLPFEKINEGF--DLLRSGESIRTI 195

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 170

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

 Score = 58.6 bits (140), Expect = 6e-11
 Identities = 34/170 (20%), Positives = 63/170 (37%), Gaps = 21/170 (12%)

Query: 206 LDFVQAAGLPLAIETAYEGLERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAAT 265
           L+ V+AA L  +  T Y  + +      K++LV+   GG+G++ +Q+AK V GA+ +   
Sbjct: 1   LNAVEAAPLTCSGITTYRAVRKASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVD 60

Query: 266 SSTRNLEFLKSLGADLAIDYTKDNFEDLPEK---------FDVVYDAIGQCDRAVKAIKE 316
                +E  K  GAD  I+ +  +      +            + ++        KA+ +
Sbjct: 61  VREEAVEAAKRAGADYVINASMQDPLAEIRRITESKGVDAVIDLNNSEKTLSVYPKALAK 120

Query: 317 GGTVVALTGAVTPPG------------FRFVVTSNGEVLKKLNPYLESGK 354
            G  V +                    F   +  N      +    E+GK
Sbjct: 121 QGKYVMVGLFGADLHYHAPLITLSEIQFVGSLVGNQSDFLGIMRLAEAGK 170

>d1p0fa1 b.35.1.2 (A:1001-1163,A:1338-1372) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} Length = 198

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

 Score = 57.6 bits (138), Expect = 2e-10
 Identities = 35/205 (17%), Positives = 62/205 (30%), Gaps = 55/205 (26%)

Query: 84  MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLP 143
            KA +  E      L   E +TV   K  +V IK++A+ +   D    +    +     P
Sbjct: 9   CKAAVAWEPHKPLSL---ETITVAPPKAHEVRIKILASGICGSDSSVLKEIIPSKF---P 62

Query: 144 TVPGYDVAGVVVKVGTQVKEFKEGDEV--------------------------YGDINEK 177
            + G++  GVV  +G  V   K GD+V                           G     
Sbjct: 63  VILGHEAVGVVESIGAGVTCVKPGDKVIPLFVPQCGSCRACKSSNSNFCEKNDMGAKTGL 122

Query: 178 ALEGPKQF-------------GSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEG 224
             +   +F              +  EYT V +  +A     ++        L ++   + 
Sbjct: 123 MADMTSRFTCRGKPIYNLMGTSTFTEYTVVADIAVAKIDPKINVNFLVSTKLTLDQINK- 181

Query: 225 LERTGFSAGKSILVLNGSGGVGSLV 249
                      +L   G G    ++
Sbjct: 182 --------AFELLSS-GQGVRSIMI 197

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} Length = 168

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

 Score = 56.5 bits (135), Expect = 3e-10
 Identities = 35/134 (26%), Positives = 52/134 (38%), Gaps = 6/134 (4%)

Query: 206 LDFVQAAGLPLAIETAYEGLERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAAT 265
                 A L  A  T Y  L       GK + V+ G GG+G + I+      GA  VA T
Sbjct: 4   EQLAAVAPLLCAGITTYSPLRHWQAGPGKKVGVV-GIGGLGHMGIK-LAHAMGAHVVAFT 61

Query: 266 SSTRNLEFLKSLGADLAIDYTKDNF-EDLPEKFDVVYDAI---GQCDRAVKAIKEGGTVV 321
           +S    E  K+LGAD  ++    +      + FD + + +      D     +K  GT+ 
Sbjct: 62  TSEAKREAAKALGADEVVNSRNADEMAAHLKSFDFILNTVAAPHNLDDFTTLLKRDGTMT 121

Query: 322 ALTGAVTPPGFRFV 335
            +    TP     V
Sbjct: 122 LVGAPATPHKSPEV 135

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} Length = 176

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 55.6 bits (133), Expect = 7e-10
 Identities = 29/134 (21%), Positives = 50/134 (37%), Gaps = 11/134 (8%)

Query: 206 LDFVQAAGLPLAIETAY---EGLERTGFS-AGKSILVLNGSGGVGSLVIQLAKQVFGASR 261
           L   +A  +  A  TA      LE  G +     +LV   +GGVGSL + +  +  G + 
Sbjct: 1   LTLKEAMAIGTAGFTAALSIHRLEEHGLTPERGPVLVTGATGGVGSLAVSMLAK-RGYTV 59

Query: 262 VAATSSTRNLEFLKSLGADLAIDYTKDNFEDLPE----KFDVVYDAIG--QCDRAVKAIK 315
            A+T      ++L+ LGA   +       E +      ++    D +G       +  ++
Sbjct: 60  EASTGKAAEHDYLRVLGAKEVLAREDVMAERIRPLDKQRWAAAVDPVGGRTLATVLSRMR 119

Query: 316 EGGTVVALTGAVTP 329
            GG V         
Sbjct: 120 YGGAVAVSGLTGGA 133

>d1jqba1 b.35.1.2 (A:1001-1139,A:1314-1351) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} Length = 177

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

 Score = 54.2 bits (129), Expect = 2e-09
 Identities = 30/193 (15%), Positives = 58/193 (30%), Gaps = 40/193 (20%)

Query: 84  MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLP 143
           MK +       +       +   P       +++ +A +              A      
Sbjct: 1   MKGFAMLGINKLGW----IEKERPVAGSYDAIVRPLAVSPCT--SDIHTVFEGALGDRKN 54

Query: 144 TVPGYDVAGVVVKVGTQVKEFKEGDEVYGDINEKALE---------------------GP 182
            + G++  G VV+VG++VK+FK GD V                                 
Sbjct: 55  MILGHEAVGEVVEVGSEVKDFKPGDRVIVPCTTPDWRSLEVQAGFQQHSNGMLAGWKFSN 114

Query: 183 KQFGSLAEYTAV--EERLLAPKPKNLDFVQAAGLPLAIETAYEGLERTGFSAGKSILVLN 240
            + G   EY  V   +  LA  PK++D  +           Y G +       +++L++ 
Sbjct: 115 FKDGVFGEYFHVNDADMNLAILPKDVDLSKLV------THVYHGFDH----IEEALLLM- 163

Query: 241 GSGGVGSLVIQLA 253
                  +   + 
Sbjct: 164 KDKPKDLIKAVVI 176

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} Length = 195

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

 Score = 53.7 bits (128), Expect = 5e-09
 Identities = 24/143 (16%), Positives = 43/143 (30%), Gaps = 25/143 (17%)

Query: 211 AAGLPLAIETAYEGLERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRN 270
              L   + T Y G    G   G ++ V  G+G VG      A+ +  A  +    +   
Sbjct: 4   LTCLSDILPTGYHGAVTAGVGPGSTVYVA-GAGPVGLAAAASARLLGAAVVIVGDLNPAR 62

Query: 271 LEFLKSLGADLAIDYTKDNFEDL------PEKFDVVYDAIG------------------Q 306
           L   K+ G ++A         +         + D   DA+G                   
Sbjct: 63  LAHAKAQGFEIADLSLDTPLHEQIAALLGEPEVDCAVDAVGFEARGHGHEGAKHEAPATV 122

Query: 307 CDRAVKAIKEGGTVVALTGAVTP 329
            +  ++  +  G +      VT 
Sbjct: 123 LNSLMQVTRVAGKIGIPGLYVTE 145

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} Length = 174

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

 Score = 52.6 bits (125), Expect = 8e-09
 Identities = 32/125 (25%), Positives = 49/125 (39%), Gaps = 10/125 (8%)

Query: 206 LDFVQAAGLPLAIETAYEGLERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAAT 265
           +    A  +   + T + G E      G S++V+ G G VG + I  AK       +   
Sbjct: 1   MPLENAVMITDMMTTGFHGAELADIEMGSSVVVI-GIGAVGLMGIAGAKLRGAGRIIGVG 59

Query: 266 SSTRNLEFLKSLGADLAIDYTKDNFED------LPEKFDVVYDAIG---QCDRAVKAIKE 316
           S    +E  K  GA   ++Y   + ED        +  D V  A G      +AVK +K 
Sbjct: 60  SRPICVEAAKFYGATDILNYKNGHIEDQVMKLTNGKGVDRVIMAGGGSETLSQAVKMVKP 119

Query: 317 GGTVV 321
           GG + 
Sbjct: 120 GGIIS 124

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} Length = 179

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

 Score = 52.3 bits (124), Expect = 9e-09
 Identities = 31/123 (25%), Positives = 54/123 (43%), Gaps = 10/123 (8%)

Query: 206 LDFVQAAGLPLAIETAYEGLERTG-FSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAA 264
           + F QAA   L   T Y  L +T      +  L    +GGVG +  Q AK   GA  +  
Sbjct: 1   ISFEQAAASFLKGLTVYYLLRKTYEIKPDEQFLFHAAAGGVGLIACQWAK-ALGAKLIGT 59

Query: 265 TSSTRNLEFLKSLGADLAIDYTKDNFEDL------PEKFDVVYDAIGQC--DRAVKAIKE 316
             + +  +     GA   I+Y +++  +        +K  VVYD++G+   +R++  ++ 
Sbjct: 60  VGTAQKAQSALKAGAWQVINYREEDLVERLKEITGGKKVRVVYDSVGRDTWERSLDCLQR 119

Query: 317 GGT 319
            G 
Sbjct: 120 RGL 122

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} Length = 166

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 50.1 bits (118), Expect = 5e-08
 Identities = 27/123 (21%), Positives = 55/123 (44%), Gaps = 9/123 (7%)

Query: 206 LDFVQAAGLPLAIETAYEGLERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAAT 265
           ++F + A +  A  T Y+GL++T    G+ + +    GG+G + +Q A+   G    A  
Sbjct: 1   VEFAEIAPILCAGVTVYKGLKQTNARPGQWVAISG-IGGLGHVAVQYARA-MGLHVAAID 58

Query: 266 SSTRNLEFLKSLGADLAIDYTKDNFEDLPEK-------FDVVYDAIGQCDRAVKAIKEGG 318
                LE  + LGA L ++  +++  +  ++         V   +     +A+   + GG
Sbjct: 59  IDDAKLELARKLGASLTVNARQEDPVEAIQRDIGGAHGVLVTAVSNSAFGQAIGMARRGG 118

Query: 319 TVV 321
           T+ 
Sbjct: 119 TIA 121

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} Length = 167

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

 Score = 48.0 bits (113), Expect = 3e-07
 Identities = 31/129 (24%), Positives = 49/129 (37%), Gaps = 16/129 (12%)

Query: 212 AGLPLAIETAY---EGLERTGFS-AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSS 267
           AG      TA      LE+ G S    S+LV   +GGVG + + +  +  G   VA+T +
Sbjct: 4   AGF-----TAALSVHRLEQNGLSPEKGSVLVTGATGGVGGIAVSMLNK-RGYDVVASTGN 57

Query: 268 TRNLEFLKSLGADLAIDYT----KDNFEDLPEKFDVVYDAIGQ--CDRAVKAIKEGGTVV 321
               ++LK LGA   I               +++    D +G       +  I+ GG+V 
Sbjct: 58  REAADYLKQLGASEVISREDVYDGTLKALSKQQWQGAVDPVGGKQLASLLSKIQYGGSVA 117

Query: 322 ALTGAVTPP 330
                    
Sbjct: 118 VSGLTGGGE 126

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} Length = 171

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

 Score = 47.8 bits (112), Expect = 3e-07
 Identities = 38/168 (22%), Positives = 66/168 (39%), Gaps = 13/168 (7%)

Query: 206 LDFVQAAGLPLAIETAYEGLERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAAT 265
           L   +AA  P++  TAY  L+R     G+ +LV   +G +G+  +Q+A+ +      AA+
Sbjct: 1   LSPEEAAAFPVSFLTAYLALKRAQARPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAAS 60

Query: 266 SSTRNLEFLKSLGADLAIDYTKDNFEDLPEKFDVVYDAIGQC-DRAVKAIKEGGTVV--- 321
              +    L     + A               D+V +  G+  + ++  +  GG +V   
Sbjct: 61  RPEKLALPLALGAEEAATYAEVPERAKAWGGLDLVLEVRGKEVEESLGLLAHGGRLVYIG 120

Query: 322 ALTGAVTPPGFRFVVTSNGEVLK-KLNPYLE--------SGKVKPIID 360
           A  G V P     ++  N  VL   L P L          G + P + 
Sbjct: 121 AAEGEVAPIPPLRLMRRNLAVLGFWLTPLLREGALVEEALGFLLPRLG 168

>d1uufa1 b.35.1.2 (A:3-144,A:313-349) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} Length = 179

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

 Score = 48.0 bits (113), Expect = 3e-07
 Identities = 34/169 (20%), Positives = 63/169 (37%), Gaps = 33/169 (19%)

Query: 84  MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLP 143
           +KA   G Y     L+  + +T  +   + V I++    +   D  + + ++    +  P
Sbjct: 1   IKA--VGAYSAKQPLEPMD-ITRREPGPNDVKIEIAYCGVCHSDLHQVRSEWA--GTVYP 55

Query: 144 TVPGYDVAGVVVKVGTQVKEFKEGDEVY----------------GDIN-----------E 176
            VPG+++ G VV VG QV+++  GD V                 G  N            
Sbjct: 56  CVPGHEIVGRVVAVGDQVEKYAPGDLVGVGCIVDSCKHCEECEDGLENYCDHMTGTYNSP 115

Query: 177 KALEGPKQFGSLAEYTAVEERLLAPKP-KNLDFVQAAGLPLAIETAYEG 224
              E     G  ++   V ER +      +++ ++A  +  A E    G
Sbjct: 116 TPDEPGHTLGGYSQQIVVHERYVLRIRVADIEMIRADQINEAYERMLRG 164

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} Length = 176

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

 Score = 48.0 bits (113), Expect = 3e-07
 Identities = 19/106 (17%), Positives = 27/106 (25%), Gaps = 9/106 (8%)

Query: 208 FVQAAGLPLAIETAYEGLERTG-FSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATS 266
             +   L   I T Y     T     G    V    G     VI   K    +  +    
Sbjct: 3   LDKVCLLGCGISTGYGAAVNTAKLEPGSVCAVFGLGGVGL-AVIMGCKVAGASRIIGVDI 61

Query: 267 STRNLEFLKSLGADLAIDYTKDNF-------EDLPEKFDVVYDAIG 305
           +       K  GA   I+    +        E      D  ++ IG
Sbjct: 62  NKDKFARAKEFGATECINPQDFSKPIQEVLIEMTDGGVDYSFECIG 107

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.6 bits (112), Expect = 3e-07
 Identities = 37/171 (21%), Positives = 62/171 (36%), Gaps = 26/171 (15%)

Query: 208 FVQAAGL-PLAIETAYEGLERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATS 266
           F + A + PL+         R G + G  +LV  G+G +G + + +AK +  A  V    
Sbjct: 3   FEEGALIEPLS--VGIHACRRGGVTLGHKVLVC-GAGPIGMVTLLVAKAMGAAQVVVTDL 59

Query: 267 STRNLEFLKSLGADLAIDYTKDNFED--------LPEKFDVVYDAIG---QCDRAVKAIK 315
           S   L   K +GADL +  +K++ ++        L  K +V  +  G        + A +
Sbjct: 60  SATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCKPEVTIECTGAEASIQAGIYATR 119

Query: 316 EGGTVVALTGAVTPPGFRFV-----------VTSNGEVLKKLNPYLESGKV 355
            GGT+V +           +           V             L S  V
Sbjct: 120 SGGTLVLVGLGSEMTTVPLLHAAIREVDIKGVFRYCNTWPVAISMLASKSV 170

>d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} Length = 177

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

 Score = 47.2 bits (111), Expect = 5e-07
 Identities = 36/128 (28%), Positives = 50/128 (39%), Gaps = 9/128 (7%)

Query: 206 LDFVQAAGLPLAIETAY---EGLERTGFS-AGKSILVLNGSGGVGSLVIQLAKQVFGASR 261
           LD  +A  +  A  TA      LE  G       I+V   SGGVGS  + L  +  G   
Sbjct: 1   LDARKAMIIGTAGFTAMLCVMALEDAGVRPQDGEIVVTGASGGVGSTAVALLHK-LGYQV 59

Query: 262 VAATSSTRNLEFLKSLGADLAIDYTKDNFEDLPEK--FDVVYDAIG--QCDRAVKAIKEG 317
           VA +      E+LKSLGA   +   +       EK  +    D +G     + +  +  G
Sbjct: 60  VAVSGRESTHEYLKSLGASRVLPRDEFAESRPLEKQVWAGAIDTVGDKVLAKVLAQMNYG 119

Query: 318 GTVVALTG 325
           G V A   
Sbjct: 120 GCVAACGL 127

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 183

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 47.0 bits (110), Expect = 7e-07
 Identities = 30/179 (16%), Positives = 65/179 (36%), Gaps = 30/179 (16%)

Query: 210 QAAGLPLAIETAYEGLERTG-FSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSST 268
           +AA   +A  TA+  L   G  S G+ +L+ + +GGVG   + +AK +       A S  
Sbjct: 2   EAATFGVAYLTAWHSLCEVGRLSPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDA 61

Query: 269 RNLEFLKSLGADLAIDYTKDNFEDL-----PEKFDVVYDAIG--QCDRAVKAIKEGGTVV 321
           +     +     +    + D  +++         DVV +++      R V+ +  GG  +
Sbjct: 62  KREMLSRLGVEYVGDSRSVDFADEILELTDGYGVDVVLNSLAGEAIQRGVQILAPGGRFI 121

Query: 322 ALTGAVTPPGFRFVVTS----------------------NGEVLKKLNPYLESGKVKPI 358
            L            + +                        ++L+ +  ++  GK++ +
Sbjct: 122 ELGKKDVYADASLGLAALAKSASFSVVDLDLNLKLQPARYRQLLQHILQHVADGKLEVL 180

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} Length = 176

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

 Score = 46.5 bits (109), Expect = 8e-07
 Identities = 23/116 (19%), Positives = 37/116 (31%), Gaps = 9/116 (7%)

Query: 208 FVQAAGLPLAIETAYEGLERTG-FSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATS 266
             +   +     T Y    +    + G +  V  G GGVG  VI   K    A  +    
Sbjct: 3   LEKVCLIGCGFSTGYGSAVKVAKVTQGSTCAVF-GLGGVGLSVIMGCKAAGAARIIGVDI 61

Query: 267 STRNLEFLKSLGADLAIDYTKD-------NFEDLPEKFDVVYDAIGQCDRAVKAIK 315
           +       K +GA   ++             E      D  ++ IG+ D  V A+ 
Sbjct: 62  NKDKFAKAKEVGATECVNPQDYKKPIQEVLTEMSNGGVDFSFEVIGRLDTMVTALS 117

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} Length = 174

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

 Score = 46.0 bits (108), Expect = 1e-06
 Identities = 19/106 (17%), Positives = 32/106 (30%), Gaps = 7/106 (6%)

Query: 206 LDFVQAAGLPLAIETAYEGLERTG-FSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAA 264
           +       L   I+T           +   S +   G+G VG   +  AK    +  +A 
Sbjct: 1   VPIELLGPLGCGIQTGAGACINALKVTPASSFVT-WGAGAVGLSALLAAKVCGASIIIAV 59

Query: 265 TSSTRNLEFLKSLGADLAIDYTKDNFED-----LPEKFDVVYDAIG 305
                 LE  K LGA   I+    +             +   ++ G
Sbjct: 60  DIVESRLELAKQLGATHVINSKTQDPVAAIKEITDGGVNFALESTG 105

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 168

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.0 bits (105), Expect = 2e-06
 Identities = 35/119 (29%), Positives = 52/119 (43%), Gaps = 9/119 (7%)

Query: 210 QAAGLPLAIETAYEGLERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTR 269
            AA L     T Y  L R G   GK + ++ G GG+GS+   ++K   GA     + S+R
Sbjct: 5   LAAPLLCGGLTVYSPLVRNGCGPGKKVGIV-GLGGIGSMGTLISKA-MGAETYVISRSSR 62

Query: 270 NLEFLKSLGADLAIDYTK--DNFEDLPEKFDVVYDAIG-----QCDRAVKAIKEGGTVV 321
             E    +GAD  I   +  D  E   + FD++            +   KA+K GG +V
Sbjct: 63  KREDAMKMGADHYIATLEEGDWGEKYFDTFDLIVVCASSLTDIDFNIMPKAMKVGGRIV 121

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} Length = 182

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

 Score = 45.3 bits (106), Expect = 3e-06
 Identities = 26/138 (18%), Positives = 55/138 (39%), Gaps = 15/138 (10%)

Query: 207 DFVQAAGLPLAIETAYEGLERTG-FSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAAT 265
           D    A    +  TAY   +      AGK++++  G+G +G   + +A+ +   + +   
Sbjct: 2   DLDVLAMAMCSGATAYHAFDEYPESFAGKTVVIQ-GAGPLGLFGVVIARSLGAENVIVIA 60

Query: 266 SSTRNLEFLKSLGADLAIDYTKDNFEDLPEK---------FDVVYDAIG---QCDRAVKA 313
            S   L+  + +GADL ++  + + E+  +           D + +A G         + 
Sbjct: 61  GSPNRLKLAEEIGADLTLNRRETSVEERRKAIMDITHGRGADFILEATGDSRALLEGSEL 120

Query: 314 IKEGGTVVALTGAVTPPG 331
           ++ GG    + G   P  
Sbjct: 121 LRRGGFYS-VAGVAVPQD 137

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} Length = 174

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

 Score = 44.8 bits (105), Expect = 3e-06
 Identities = 19/115 (16%), Positives = 37/115 (32%), Gaps = 9/115 (7%)

Query: 209 VQAAGLPLAIETAYEGLERTG-FSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSS 267
           +++  +     T Y     T   + G +  V  G GGVG   I   K    +  +   + 
Sbjct: 3   LESCLIGCGFATGYGAAVNTAKVTPGSTCAVF-GLGGVGFSAIVGCKAAGASRIIGVGTH 61

Query: 268 TRNLEFLKSLGADLAIDYTKDNF-------EDLPEKFDVVYDAIGQCDRAVKAIK 315
                    LGA   ++    +        E      D   +  G+ +  + A++
Sbjct: 62  KDKFPKAIELGATECLNPKDYDKPIYEVICEKTNGGVDYAVECAGRIETMMNALQ 116

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} Length = 170

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

 Score = 44.6 bits (104), Expect = 4e-06
 Identities = 25/135 (18%), Positives = 44/135 (32%), Gaps = 5/135 (3%)

Query: 208 FVQAAGL-PLAIETAYEGLERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATS 266
             + A L PL+         R G   G ++LV+ G+G +G + +  AK         A S
Sbjct: 3   LEEGALLEPLS--VGVHACRRAGVQLGTTVLVI-GAGPIGLVSVLAAKAYGAFVVCTARS 59

Query: 267 STRNLEFLKSLGADLAIDYTKDNFEDLPEKFDVVYDAIGQCDRAVKAIKEGGTVVALTGA 326
             R  E  K+ GAD+ +       E+      +        +  +        +      
Sbjct: 60  PRRL-EVAKNCGADVTLVVDPAKEEESSIIERIRSAIGDLPNVTIDCSGNEKCITIGINI 118

Query: 327 VTPPGFRFVVTSNGE 341
               G   +V    +
Sbjct: 119 TRTGGTLMLVGMGSQ 133

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} Length = 175

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

 Score = 44.2 bits (103), Expect = 6e-06
 Identities = 15/106 (14%), Positives = 27/106 (25%), Gaps = 9/106 (8%)

Query: 208 FVQAAGLPLAIETAYEGLERTG-FSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATS 266
                 L   + T +     T     G +  V    G VG   +           +A   
Sbjct: 3   LDTVCLLGCGVSTGFGAAVNTAKVEPGSTCAVFGL-GAVGLAAVMGCHSAGAKRIIAVDL 61

Query: 267 STRNLEFLKSLGADLAIDYTKDN-------FEDLPEKFDVVYDAIG 305
           +    E  K  GA   ++    +        +      D   + +G
Sbjct: 62  NPDKFEKAKVFGATDFVNPNDHSEPISQVLSKMTNGGVDFSLECVG 107

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 168

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 43.6 bits (101), Expect = 8e-06
 Identities = 11/33 (33%), Positives = 18/33 (54%)

Query: 206 LDFVQAAGLPLAIETAYEGLERTGFSAGKSILV 238
           L F +AA +  A  T Y+ L+ TG   G+ + +
Sbjct: 1   LSFEEAAPIFCAGVTTYKALKVTGAKPGEWVAI 33

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} Length = 176

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

 Score = 41.4 bits (96), Expect = 4e-05
 Identities = 25/148 (16%), Positives = 44/148 (29%), Gaps = 14/148 (9%)

Query: 208 FVQAAGLPLAIETAYEGLERTG-FSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATS 266
             +   +     T Y    +TG    G + +V  G GGVG  VI   K    +  +    
Sbjct: 4   PEKVCLIGCGFSTGYGAAVKTGKVKPGSTCVVF-GLGGVGLSVIMGCKSAGASRIIGIDL 62

Query: 267 STRNLEFLKSLGADLAIDYTKDNF-------EDLPEKFDVVYDAIGQCD---RAVKAIKE 316
           +    E   ++GA   I              E         ++ IG  +    A+ +   
Sbjct: 63  NKDKFEKAMAVGATECISPKDSTKPISEVLSEMTGNNVGYTFEVIGHLETMIDALASCHM 122

Query: 317 GGTVVALTGAVTPPGFRFVVTSNGEVLK 344
                 + G   PP  + +      +  
Sbjct: 123 NYGTSVVVG--VPPSAKMLTYDPMLLFT 148

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.2 bits (95), Expect = 5e-05
 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)

Query: 206 LDFVQAAGLPLAIETAYEGLERTG-FSAGKSILV 238
           LDF Q A + +   TAY  L  +    AG+S+LV
Sbjct: 1   LDFKQGAAIGIPYFTAYRALIHSACVKAGESVLV 34

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} Length = 187

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.5 bits (88), Expect = 5e-04
 Identities = 38/188 (20%), Positives = 70/188 (37%), Gaps = 39/188 (20%)

Query: 205 NLDFVQAAGLPLAIETAYEGLERTG-FSAGK--SILVLNGSGGVGSLVIQLAKQVFGASR 261
           +L +   A + +   T+  G++  G  SAG   +++V   +G  GSL  Q+   +  +  
Sbjct: 1   HLSYFLGA-IGMPGLTSLIGVQEKGHISAGSNQTMVVSGAAGACGSLAGQIGHLLGCSRV 59

Query: 262 VAATSSTRNLEFL-KSLGADLAIDYTKDNFEDLPEK-----FDVVYDAI-GQCDRAVKAI 314
           V    +     FL   LG D A++Y   N  +   +      DV +D + G     V + 
Sbjct: 60  VGICGTQEKCLFLTSELGFDAAVNYKTGNVAEQLREACPGGVDVYFDNVGGDISNTVISQ 119

Query: 315 KEGGTVVALTGAVT---------PPGF---------------RFVVTS----NGEVLKKL 346
               + + L G ++         PP                 RF V +        + +L
Sbjct: 120 MNENSHIILCGQISQYNKDVPYPPPLPPAVEAIRKERNITRERFTVLNYKDKFEPGILQL 179

Query: 347 NPYLESGK 354
           + + + GK
Sbjct: 180 SQWFKEGK 187

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} Length = 174

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

 Score = 37.2 bits (85), Expect = 0.001
 Identities = 20/117 (17%), Positives = 35/117 (29%), Gaps = 9/117 (7%)

Query: 207 DFVQAAGLPLAIETAYEGLERTG-FSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAAT 265
           +  +   +     + Y     T   + G +  V  G G VG   I   K    +  +A  
Sbjct: 2   NLERVCLIGCGFSSGYGAAINTAKVTPGSTCAVF-GLGCVGLSAIIGCKIAGASRIIAID 60

Query: 266 SSTRNLEFLKSLGADLAIDYTKDN-------FEDLPEKFDVVYDAIGQCDRAVKAIK 315
            +       K+LGA   ++  + +        E      D   D  G       A+ 
Sbjct: 61  INGEKFPKAKALGATDCLNPRELDKPVQDVITELTAGGVDYSLDCAGTAQTLKAAVD 117

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} Length = 182

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

 Score = 36.6 bits (83), Expect = 0.002
 Identities = 33/117 (28%), Positives = 56/117 (47%), Gaps = 10/117 (8%)

Query: 214 LPLAIETAYEGLERTG-FSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLE 272
           + +   TAY GL        G+++LV   +G VGS+V Q+AK + G   V A  S   + 
Sbjct: 10  IGMPGLTAYFGLLEVCGVKGGETVLVSAAAGAVGSVVGQIAK-LKGCKVVGAAGSDEKIA 68

Query: 273 FLKSLGADLAIDYTKDNFED------LPEKFDVVYDAIGQ--CDRAVKAIKEGGTVV 321
           +LK +G D A +Y   N  +       P+ +D  +D +G    +  +  +K+ G + 
Sbjct: 69  YLKQIGFDAAFNYKTVNSLEEALKKASPDGYDCYFDNVGGEFLNTVLSQMKDFGKIA 125

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]} Length = 234

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

 Score = 36.2 bits (83), Expect = 0.004
 Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 13/80 (16%)

Query: 233 GKSILVLNGSGGVG-SLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFE 291
            K +LVL  S G+G ++   L+++  GA  V   +  RN E LK  G    +        
Sbjct: 4   DKGVLVLAASRGIGRAVADVLSQE--GA-EVTICA--RNEELLKRSGHRYVV-------C 51

Query: 292 DLPEKFDVVYDAIGQCDRAV 311
           DL +  D++++ + + D  V
Sbjct: 52  DLRKDLDLLFEKVKEVDILV 71

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	392
d1yb5a1	150	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	99.97
d1llua1	175	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	99.97
d1e3ja1	178	Ketose reductase (sorbitol dehydrogenase) {Silverl	99.97
d1piwa1	192	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	99.97
d1qora1	147	Quinone oxidoreductase {Escherichia coli [TaxId: 5	99.96
d1h2ba1	171	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	99.96
d1rjwa1	171	Alcohol dehydrogenase {Bacillus stearothermophilus	99.96
d1e3ia1	202	Alcohol dehydrogenase {Mouse (Mus musculus), class	99.96
d1cdoa1	199	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	99.96
d1pl8a1	185	Ketose reductase (sorbitol dehydrogenase) {Human (	99.95
d1xa0a1	152	B. subtilis YhfP homologue {Bacillus stearothermop	99.95
d2fzwa1	197	Alcohol dehydrogenase {Human (Homo sapiens), diffe	99.95
d1vj0a1	184	Hypothetical protein TM0436 {Thermotoga maritima [	99.95
d1f8fa1	194	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	99.95
d1iz0a1	131	Quinone oxidoreductase {Thermus thermophilus [TaxI	99.95
d1jvba1	177	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	99.95
d1jqba1	177	Bacterial secondary alcohol dehydrogenase {Clostri	99.94
d1kola1	201	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	99.94
d2jhfa1	198	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	99.94
d1tt7a1	162	Hypothetical protein YhfP {Bacillus subtilis [TaxI	99.94
d1o89a1	146	Hypothetical protein YhdH {Escherichia coli [TaxId	99.93
d1p0fa1	198	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	99.93
d1gu7a1	175	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	99.92
d1uufa1	179	Hypothetical protein YahK {Escherichia coli [TaxId	99.92
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	99.89
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	99.89
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	99.89
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	99.89
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	99.89
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	99.88
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	99.88
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	99.88
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	99.88
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	99.87
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	99.87
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	99.86
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	99.85
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	99.85
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	99.85
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	99.85
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	99.85
d1gu7a2	189	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	99.85
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	99.85
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	99.83
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	99.83
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	99.81
d1o89a2	177	Hypothetical protein YhdH {Escherichia coli [TaxId	99.81
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	99.81
d1vj1a2	187	Putative zinc-binding alcohol dehydrogenase {Mouse	99.8
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	99.8
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	99.79
d1tt7a2	167	Hypothetical protein YhfP {Bacillus subtilis [TaxI	99.75
d1v3va1	147	Leukotriene b4 12-hydroxydehydrogenase/prostagland	99.66
d1vj1a1	166	Putative zinc-binding alcohol dehydrogenase {Mouse	99.66
d1o8ca2	77	Hypothetical protein YhdH {Escherichia coli [TaxId	99.54
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	97.88
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	97.87
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	97.72
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	97.59
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	97.53
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	97.52
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	97.51
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	97.44
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	97.37
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	97.35
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	97.34
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	97.32
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	97.32
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	97.29
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	97.24
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	97.23
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	97.21
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	97.21
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	97.19
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	97.16
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	97.14
d1dhra_	236	Dihydropteridin reductase (pteridine reductase) {R	97.14
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	97.12
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	97.12
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	97.11
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	97.11
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	97.09
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	97.04
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	97.04
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	97.04
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	97.03
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	97.03
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	97.02
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	97.01
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	96.98
d2ag5a1	245	Dehydrogenase/reductase SDR family member 6, DHRS6	96.97
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	96.96
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	96.93
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	96.91
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	96.89
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	96.87
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	96.86
d1gz6a_	302	(3R)-hydroxyacyl-CoA dehydrogenase domain of estra	96.86
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	96.78
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	96.77
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	96.76
d1ooea_	235	Dihydropteridin reductase (pteridine reductase) {N	96.76
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	96.75
d1sbya1	254	Drosophila alcohol dehydrogenase {Fly (Drosophila	96.75
d1bdba_	276	Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps	96.73
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	96.72
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	96.72
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	96.71
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	96.71
d1o5ia_	234	beta-keto acyl carrier protein reductase {Thermoto	96.69
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	96.61
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	96.61
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	96.59
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	96.56
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	96.55
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	96.53
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	96.52
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	96.52
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	96.5
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	96.5
d1zmta1	252	Halohydrin dehalogenase HheC {Agrobacterium tumefa	96.48
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	96.45
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	96.45
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	96.39
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	96.35
d1edoa_	244	beta-keto acyl carrier protein reductase {Oil seed	96.34
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	96.34
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	96.31
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	96.3
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	96.3
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	96.3
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	96.29
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	96.24
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	96.14
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	96.13
d2bd0a1	240	Bacterial sepiapterin reductase {Chlorobium tepidu	96.1
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	96.1
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	96.0
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	95.99
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	95.96
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	95.95
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	95.92
d2o23a1	248	Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho	95.91
d1yo6a1	250	Putative carbonyl reductase sniffer {Caenorhabditi	95.88
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	95.72
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	95.66
d1uzma1	237	beta-keto acyl carrier protein reductase {Mycobact	95.63
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	95.62
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	95.62
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	95.61
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	95.56
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	95.47
d2fr1a1	259	Erythromycin synthase, eryAI, 1st ketoreductase mo	95.46
d2czca2	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	95.45
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	95.41
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	95.34
d1snya_	248	Carbonyl reductase sniffer {Fruit fly (Drosophila	95.27
d1y1pa1	342	Aldehyde reductase II {Sporobolomyces salmonicolor	95.21
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	95.13
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	95.07
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	95.05
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	94.91
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	94.87
d1r0ka2	150	1-deoxy-D-xylulose-5-phosphate reductoisomerase {Z	94.8
d2q46a1	252	Hypothetical protein At5g02240 (T7H20_290) {Thale	94.73
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	94.71
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	94.7
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	94.7
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	94.69
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	94.63
d1yl7a1	135	Dihydrodipicolinate reductase {Mycobacterium tuber	94.62
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	94.49
d1gdha1	191	D-glycerate dehydrogenase {Hyphomicrobium methylov	94.28
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	94.26
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	94.19
d1mxha_	266	Dihydropteridin reductase (pteridine reductase) {T	94.17
d1b7go1	178	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	94.13
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	94.12
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	94.1
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	93.98
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	93.97
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	93.97
d2bkaa1	232	TAT-interacting protein TIP30 {Human (Homo sapiens	93.97
d1cf2o1	171	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	93.96
d1ygya1	184	Phosphoglycerate dehydrogenase {Mycobacterium tube	93.82
d2h7ma1	268	Enoyl-ACP reductase {Mycobacterium tuberculosis, T	93.8
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	93.69
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	93.69
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	93.59
d1xeaa1	167	Putative oxidoreductase VCA1048 {Vibrio cholerae [	93.49
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	93.33
d1uaya_	241	Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t	93.13
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	93.08
d2bhsa1	292	O-acetylserine sulfhydrylase (Cysteine synthase) {	93.05
d2b69a1	312	UDP-glucuronate decarboxylase 1 {Human (Homo sapie	92.96
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	92.96
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	92.96
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	92.93
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	92.87
d1oaaa_	259	Sepiapterin reductase {Mouse (Mus musculus) [TaxId	92.86
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	92.75
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	92.72
d2g82a1	168	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	92.7
d1jtva_	285	Human estrogenic 17beta-hydroxysteroid dehydrogena	92.65
d1nvmb1	157	Acetaldehyde dehydrogenase (acylating) {Pseudomona	92.65
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	92.57
d1jbqa_	355	Cystathionine beta-synthase {Human (Homo sapiens)	92.55
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	92.52
d1j5pa4	132	Hypothetical protein TM1643 {Thermotoga maritima [	92.46
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	92.44
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	92.44
d1fjha_	257	3-alpha-hydroxysteroid dehydrogenase {Comamonas te	92.37
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	92.27
d1q0qa2	151	1-deoxy-D-xylulose-5-phosphate reductoisomerase {E	92.17
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	91.98
d1u8fo1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	91.95
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	91.95
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	91.93
d1dssg1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	91.83
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	91.75
d1e7wa_	284	Dihydropteridin reductase (pteridine reductase) {L	91.45
d1orra_	338	CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId:	91.43
d1vm6a3	128	Dihydrodipicolinate reductase {Thermotoga maritima	91.42
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	90.88
d1b0aa1	166	Methylenetetrahydrofolate dehydrogenase/cyclohydro	90.77
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	90.73
d1a4ia1	170	Methylenetetrahydrofolate dehydrogenase/cyclohydro	90.67
d1d7oa_	297	Enoyl-ACP reductase {Oil seed rape (Brassica napus	90.61
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	90.6
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	90.55
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	90.55
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	90.38
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	90.3
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	90.16
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	89.96
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	89.92
d1diha1	162	Dihydrodipicolinate reductase {Escherichia coli [T	89.91
d1leha1	230	Leucine dehydrogenase {Bacillus sphaericus [TaxId:	89.85
d1tlta1	164	Virulence factor MviM {Escherichia coli [TaxId: 56	89.85
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	89.79
d1gado1	166	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	89.71
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	89.69
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	89.64
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	89.56
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	89.46
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	89.4
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	89.35
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	89.35
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	89.23
d3cmco1	171	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	89.2
d1sc6a1	188	Phosphoglycerate dehydrogenase {Escherichia coli [	89.12
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	88.95
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	88.75
d1wkva1	382	O-acetylserine sulfhydrylase (Cysteine synthase) {	88.67
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	88.56
d1ydwa1	184	Probable oxidoreductase At4g09670 {Thale cress (Ar	88.49
d1sqga2	284	Ribosomal RNA small subunit methyltransferase B, R	88.48
d2b4ro1	166	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	88.47
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	88.17
d1z7wa1	320	O-acetylserine sulfhydrylase (Cysteine synthase) {	88.14
d2i76a2	153	Hypothetical protein TM1727 {Thermotoga maritima [	88.11
d1obfo1	173	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	88.1
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	88.09
d1ixka_	313	Hypothetical methyltransferase PH1374 {Archaeon Py	87.92
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	87.61
d1rpna_	321	GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos	87.35
d1h6da1	221	Glucose-fructose oxidoreductase, N-terminal domain	87.25
d1f06a1	170	Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb	87.23
d1zh8a1	181	Hypothetical protein TM0312 {Thermotoga maritima [	87.21
d1hdgo1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	87.17
d2blla1	342	Polymyxin resistance protein ArnA (PrmI) {Escheric	86.48
d2a35a1	212	Hypothetical protein PA4017 {Pseudomonas aeruginos	86.29
d1tdja1	331	Threonine deaminase {Escherichia coli [TaxId: 562]	86.2
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	86.07
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	86.07
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	85.94
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	85.48
d1rm4a1	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	85.39
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	85.37
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	85.24
d2cvoa1	183	Putative semialdehyde dehydrogenase {Rice (Oryza s	85.17
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	85.1
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	84.9
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	84.7
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	84.64
d1i24a_	393	Sulfolipid biosynthesis protein SQD1 {Thale cress	84.59
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	84.58
d1udca_	338	Uridine diphosphogalactose-4-epimerase (UDP-galact	84.34
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	83.85
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	83.42
d2gz1a1	154	Aspartate beta-semialdehyde dehydrogenase {Strepto	82.9
d1v71a1	318	Hypothetical protein C320.14 (SPCC320.14, SPCC330.	82.78
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	82.76
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	82.69
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	82.62
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	82.45
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	82.18
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	82.1
d2nvwa1	237	Galactose/lactose metabolism regulatory protein GA	81.7
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	81.63
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	81.46
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	81.11
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	81.06
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	80.95
d1omoa_	320	Archaeal alanine dehydrogenase {Archaeon Archaeogl	80.9
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	80.72
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	80.63
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	80.47
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	80.46
d1y7la1	310	O-acetylserine sulfhydrylase (Cysteine synthase) {	80.43
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	80.41
d1v9la1	242	Glutamate dehydrogenase {Pyrobaculum islandicum [T	80.4
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	80.13
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	80.04

>d1yb5a1 b.35.1.2 (A:6-120,A:295-329) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2.3e-31  Score=223.55  Aligned_cols=148  Identities=36%  Similarity=0.515  Sum_probs=134.6

Q ss_pred             ceeEEEEcccCCcceEEEeccccCCCCCCCeEEEEEeEEecChHhHHhhcCCCCCCCCCCCCcCCCceeEEEEEeCCCCC
Q 016265           83 EMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVK  162 (392)
Q Consensus        83 ~mka~v~~~~~~~~~l~~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~~~p~v~G~e~~G~V~~vG~~v~  162 (392)
                      .|||++++++|+++.++++++.+.|+|++|||||||.++|||++|++.++|.++. ...+|.++|||++|+|+++|++++
T Consensus         2 ~MkAv~~~~~G~p~~l~~~~~~~~P~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~-~~~~p~i~G~e~~G~V~~vG~~v~   80 (150)
T d1yb5a1           2 LMRAVRVFEFGGPEVLKLRSDIAVPIPKDHQVLIKVHACGVNPVETYIRSGTYSR-KPLLPYTPGSDVAGVIEAVGDNAS   80 (150)
T ss_dssp             EEEEEEESSCSSGGGEEEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHHTCSSC-CCCSSBCCCSCEEEEEEEECTTCT
T ss_pred             ceeEEEEEccCCcceEEEEeecCCCCCCCCeEEEEEEEecCcccchhhhcCCcCc-cccccccCccceeeeeEeecceee
Confidence            5999999999999889987578999999999999999999999999999998753 356789999999999999999999


Q ss_pred             CCCCCCEEEecccccccCCCCCCCcceeEEEecCCceeeCCCCCCHHhHhccchhHHHHHHHH-HhcCCCCCCeEEEE
Q 016265          163 EFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGL-ERTGFSAGKSILVL  239 (392)
Q Consensus       163 ~~~vGdrV~~~~~~~~~~~~~~~G~~a~~~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~al-~~~~~~~g~~VlI~  239 (392)
                      +|++||||++...        .+|+|+||+.+++++++++|+++++++|++++++..|+|+++ ..+....|++|||+
T Consensus        81 ~~~vGdrV~~~~~--------~~G~~ae~~~v~~~~~~~iP~~ls~~~Aa~~~~~~~ta~~~~~~~g~~~~G~~vliL  150 (150)
T d1yb5a1          81 AFKKGDRVFTSST--------ISGGYAEYALAADHTVYKLPEKLKPVIGSQYPLEKVAEAHENIIHGSGATGKMILLL  150 (150)
T ss_dssp             TCCTTCEEEESCC--------SSCSSBSEEEEEGGGEEECCTTCCCCEEEEEEGGGHHHHHHHHHHSSCCSSEEEEEC
T ss_pred             ccccCcccccccc--------ccccccccccccccccccccCCCCHHHHHHhhhhhhhehhhheEEcCcccCCEEEEC
Confidence            9999999998643        469999999999999999999999999999999999999987 56778999999984

>d1llua1 b.35.1.2 (A:2-143,A:310-342) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.97  E-value=2.3e-31  Score=229.73  Aligned_cols=156  Identities=29%  Similarity=0.411  Sum_probs=135.2

Q ss_pred             CCCcceeEEEEcccCCcceEEEeccccCCCCCCCeEEEEEeEEecChHhHHhhcCCCCCCCCCCCCcCCCceeEEEEEeC
Q 016265           79 TVPSEMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVG  158 (392)
Q Consensus        79 ~~p~~mka~v~~~~~~~~~l~~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~~~p~v~G~e~~G~V~~vG  158 (392)
                      +||.+|||+++++++++  ++++ +++.|.|++|||||||.++|||++|++.++|.++ ....+|.++|||++|+|+++|
T Consensus         1 ~~P~tMkA~v~~~~g~p--l~l~-evp~P~~~~~evlVkv~a~gic~~D~~~~~G~~~-~~~~~P~i~GhE~~G~V~~~G   76 (175)
T d1llua1           1 TLPQTMKAAVVHAYGAP--LRIE-EVKVPLPGPGQVLVKIEASGVCHTDLHAAEGDWP-VKPPLPFIPGHEGVGYVAAVG   76 (175)
T ss_dssp             CCCSEEEEEEBCSTTSC--CEEE-EEECCCCCTTCEEEEEEEEECCHHHHHHHHTCSS-SCCCSSBCCCSCEEEEEEEEC
T ss_pred             CcchhcEEEEEEeCCCC--CEEE-EeECCCCCCCEEEEEEEEecCcccchhhhccCcc-ccccCCcCCCCcceEEEEEeC
Confidence            47999999999999876  7778 8999999999999999999999999999999875 335689999999999999999


Q ss_pred             CCCCCCCCCCEEEecccc-------------------cccCCCCCCCcceeEEEecCCceeeCCCCCCHHhHhccchhHH
Q 016265          159 TQVKEFKEGDEVYGDINE-------------------KALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIE  219 (392)
Q Consensus       159 ~~v~~~~vGdrV~~~~~~-------------------~~~~~~~~~G~~a~~~~v~~~~~~~iP~~l~~~~aa~l~~~~~  219 (392)
                      ++|+++++||||+.....                   ....|...+|+|+||+.+++++++++|++++++.++++..++.
T Consensus        77 ~~v~~~~~GdrV~~~~~~~~~g~~~~~~~g~~~~~~~~~~~G~~~~gg~aey~~v~~~~~~~iPd~l~~~~a~~~~~~~~  156 (175)
T d1llua1          77 SGVTRVKEGDRVGIPWLYTACGCCEHCLTGWETLCESQQNTGYSVNGGYAEYVLADPNYVGILPKNVKATIHPGKLDDIN  156 (175)
T ss_dssp             TTCCSCCTTCEEEECSEEECCSSSHHHHTTCGGGCTTCEEBTTTBCCSSBSEEEECTTTSEECCTTCCCCEEEECGGGHH
T ss_pred             CCccccccCCEEEeccccccCCccccccCCcccccccccccccccccccceEEEechHHEEECCCCCChhHHHHHHhHHH
Confidence            999999999999864211                   1124456679999999999999999999999988888888998


Q ss_pred             HHHHHHHhcCCCCCCeEEEE
Q 016265          220 TAYEGLERTGFSAGKSILVL  239 (392)
Q Consensus       220 ta~~al~~~~~~~g~~VlI~  239 (392)
                      |++++++... .+|++|||+
T Consensus       157 t~~~~~~~g~-~~G~~VLVl  175 (175)
T d1llua1         157 QILDQMRAGQ-IEGRIVLEM  175 (175)
T ss_dssp             HHHHHHHTTC-CSSEEEEEC
T ss_pred             HHHHHHHhCC-CCCCEEEeC
Confidence            9998886554 469999985

>d1e3ja1 b.35.1.2 (A:4-142,A:313-351) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=99.97  E-value=4.2e-31  Score=228.63  Aligned_cols=155  Identities=25%  Similarity=0.302  Sum_probs=131.3

Q ss_pred             ceeEEEEcccCCcceEEEeccccCCCCCCCeEEEEEeEEecChHhHHhhcCCCC-CCCCCCCCcCCCceeEEEEEeCCCC
Q 016265           83 EMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFK-ATDSPLPTVPGYDVAGVVVKVGTQV  161 (392)
Q Consensus        83 ~mka~v~~~~~~~~~l~~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~g~~~-~~~~~~p~v~G~e~~G~V~~vG~~v  161 (392)
                      +|+|+. .++++   ++++ +++.|+|+++|||||+.++|||++|++.+++... ....++|.++|||++|+|+++|++|
T Consensus         2 ~maAVl-~g~~~---l~~~-e~~~P~~~~~evlVkv~a~gic~sD~~~~~~~~~~~~~~~~p~i~GhE~~G~Vv~vG~~v   76 (178)
T d1e3ja1           2 NLSAVL-YKQND---LRLE-QRPIPEPKEDEVLLQMAYVGICGSDVHYYEHGRIADFIVKDPMVIGHEASGTVVKVGKNV   76 (178)
T ss_dssp             CEEEEE-EETTE---EEEE-ECCCCCCCTTEEEEEEEEEEECHHHHHHHHHSBSSSCBCCSCEECCCEEEEEEEEECTTC
T ss_pred             ceEEEE-EcCCc---EEEE-EeECCCCCCCEEEEEEEEEcccCchhhhhccCccccccccCCeeeccccceEEEecCccc
Confidence            466665 44554   8999 9999999999999999999999999998876532 2335678999999999999999999


Q ss_pred             CCCCCCCEEEeccccc-------------------ccCCCCCCCcceeEEEecCCceeeCCCCCCHHhHhccchhHHHHH
Q 016265          162 KEFKEGDEVYGDINEK-------------------ALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAY  222 (392)
Q Consensus       162 ~~~~vGdrV~~~~~~~-------------------~~~~~~~~G~~a~~~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~  222 (392)
                      ++|++||||+......                   ...+...+|+|+||+++++++++++|+++++++++.+++++.|+|
T Consensus        77 ~~~~~GdrV~~~~~~~~~~c~~c~~g~~~~c~~~~~~~~~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~~~~~~~ta~  156 (178)
T d1e3ja1          77 KHLKKGDRVAVEPGVPCRRCQFCKEGKYNLCPDLTFCATPPDDGNLARYYVHAADFCHKLPDNCNVKQLVTHSFKLEQTV  156 (178)
T ss_dssp             CSCCTTCEEEECCEECCSSSHHHHTTCGGGCTTCEETTBTTBCCSCBSEEEEEGGGEEECCTTCCCGGGEEEEEEGGGHH
T ss_pred             CCCCCCCEEEECcccccCCccccccCCccccccccceeccccccccceeeeecccceeeCCCCCCHHHHHHHHhHHHHHH
Confidence            9999999998653211                   112334579999999999999999999999999999999999999


Q ss_pred             HHHHhcCCCCCCeEEEEcCC
Q 016265          223 EGLERTGFSAGKSILVLNGS  242 (392)
Q Consensus       223 ~al~~~~~~~g~~VlI~Ga~  242 (392)
                      ++++++++++|++|+|+||.
T Consensus       157 ~a~~~~~~~~g~~VlVig~C  176 (178)
T d1e3ja1         157 DAFEAARKKADNTIKVMISC  176 (178)
T ss_dssp             HHHHHHHHCCTTCSEEEEEC
T ss_pred             HHHHHhCCCCCCEEEEEccc
Confidence            99999999999999999864

>d1piwa1 b.35.1.2 (A:1-152,A:321-360) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=3.4e-30  Score=224.80  Aligned_cols=159  Identities=19%  Similarity=0.232  Sum_probs=134.0

Q ss_pred             CCCCcceeEEEEcccCCcceEEEeccccCCCCCCCeEEEEEeEEecChHhHHhhcCCCCCCCCCCCCcCCCceeEEEEEe
Q 016265           78 GTVPSEMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKV  157 (392)
Q Consensus        78 ~~~p~~mka~v~~~~~~~~~l~~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~~~p~v~G~e~~G~V~~v  157 (392)
                      |++|.+|||+++..++....+++. +.+.++++++|||||+.++|||++|++.+.|.++  ...+|+++|||++|+|+++
T Consensus         1 m~~P~~~ka~~~~~~~~~~~~~~~-~~~p~p~~~~eVlVkv~a~giC~sDl~~~~g~~~--~~~~P~i~GHE~~G~Vv~v   77 (192)
T d1piwa1           1 MSYPEKFEGIAIQSHEDWKNPKKT-KYDPKPFYDHDIDIKIEACGVCGSDIHCAAGHWG--NMKMPLVVGHEIVGKVVKL   77 (192)
T ss_dssp             CCTTTCEEEEEECCSSSTTSCEEE-EECCCCCCTTEEEEEEEEEEECHHHHHHHTTTTS--CCCSSEECCCCEEEEEEEE
T ss_pred             CCCCceeEEEEEeCCCcCCcceEe-eccCCCCCCCeEEEEEeeeCCCcchHHHHcCCCC--CCCCCcCcccccccchhhc
Confidence            467899999999999887667777 6666778999999999999999999999999875  3568999999999999999


Q ss_pred             CCCC-CCCCCCCEEEecccc--------------------------cccCCCCCCCcceeEEEecCCceeeCCCCCCHHh
Q 016265          158 GTQV-KEFKEGDEVYGDINE--------------------------KALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQ  210 (392)
Q Consensus       158 G~~v-~~~~vGdrV~~~~~~--------------------------~~~~~~~~~G~~a~~~~v~~~~~~~iP~~l~~~~  210 (392)
                      |+++ +.+++||||......                          ....|...+|+|+||+++++++++++|+++++++
T Consensus        78 G~~v~~~~k~GdrV~~~~~~~~c~~c~~c~~g~~~~C~~~~~~~~~~~~~G~~~~Ggfaey~~v~~~~~~~iP~~l~~e~  157 (192)
T d1piwa1          78 GPKSNSGLKVGQRVGVGAQVFSCLECDRCKNDNEPYCTKFVTTYSQPYEDGYVSQGGYANYVRVHEHFVVPIPENIWVET  157 (192)
T ss_dssp             CTTCCSSCCTTCEEEECSEEECCSCSHHHHTTCGGGCTTCEESSSCBCTTSCBCCCSSBSEEEEEGGGEEECCTTCCEEE
T ss_pred             ccccccccCCCCeeeEeeeccCCCCchhhhcCCcccccccccccccccccccccccceeeEEEeehHHeEECCCCCCHHH
Confidence            9988 679999999643210                          0112455679999999999999999999999987


Q ss_pred             HhccchhHHHHHHHHHhcCCCCCCeEEEE
Q 016265          211 AAGLPLAIETAYEGLERTGFSAGKSILVL  239 (392)
Q Consensus       211 aa~l~~~~~ta~~al~~~~~~~g~~VlI~  239 (392)
                      |+.+..++.|||++++++++++|++|+|.
T Consensus       158 Aal~~~~~~ta~~~l~~~~vk~g~~Vvv~  186 (192)
T d1piwa1         158 LPVGEAGVHEAFERMEKGDVRYRFTLVGY  186 (192)
T ss_dssp             EESSHHHHHHHHHHHHHTCCSSEEEEECC
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCCCEEEEE
Confidence            76555557799999999999999999986

>d1qora1 b.35.1.2 (A:2-112,A:292-327) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=99.96  E-value=5.4e-29  Score=208.40  Aligned_cols=143  Identities=24%  Similarity=0.336  Sum_probs=127.5

Q ss_pred             eEEEEcccCCcceEEEeccccCCCCCCCeEEEEEeEEecChHhHHhhcCCCCCCCCCCCCcCCCceeEEEEEeCCCCCCC
Q 016265           85 KAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKEF  164 (392)
Q Consensus        85 ka~v~~~~~~~~~l~~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~~~p~v~G~e~~G~V~~vG~~v~~~  164 (392)
                      +.+.|+++|.++.|+++ +.+.|+|++|||+|||.+++||++|+++++|.++  ...+|.++|||++|+|+++|++|++|
T Consensus         2 ~~i~~~~~G~pe~l~~~-e~~~P~p~~~eVlVkv~a~~in~~D~~~~~G~~~--~~~~p~~~G~e~~G~V~~vG~~v~~~   78 (147)
T d1qora1           2 TRIEFHKHGGPEVLQAV-EFTPADPAENEIQVENKAIGINFIDTYIRSGLYP--PPSLPSGLGTEAAGIVSKVGSGVKHI   78 (147)
T ss_dssp             EEEEBSSCCSGGGCEEE-ECCCCCCCTTEEEEEEEEEECCHHHHHHHHTSSC--CSSSSBCCCSCEEEEEEEECTTCCSC
T ss_pred             eEEEEcccCCCceeEEE-EecCCCCCCCEEEEEEEEecccceeeeeecCCCC--CCcceeeeccccccceeeeeeecccc
Confidence            56889999999999999 8999999999999999999999999999999875  35688999999999999999999999


Q ss_pred             CCCCEEEecccccccCCCCCCCcceeEEEecCCceeeCCCCCCHHhH--hccchhHHHHHHHHHhcCCCCCCeEEE
Q 016265          165 KEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQA--AGLPLAIETAYEGLERTGFSAGKSILV  238 (392)
Q Consensus       165 ~vGdrV~~~~~~~~~~~~~~~G~~a~~~~v~~~~~~~iP~~l~~~~a--a~l~~~~~ta~~al~~~~~~~g~~VlI  238 (392)
                      ++||||+....        ..|+|+||.+++.+.++++|++++++++  +++++...|+++++.+.++++|++|||
T Consensus        79 ~vGdrV~~~~~--------~~G~~ae~~~v~~~~~~~~P~~~~~~~a~a~~~~~~~~~~~~~l~~~~~~~G~~VLI  146 (147)
T d1qora1          79 KAGDRVVYAQS--------ALGAYSSVHNIIADKAAILPAAIKVDVAEQQKYPLKDAQRAHEILESRATQGSSLLI  146 (147)
T ss_dssp             CTTCEEEESCC--------SSCCSBSEEEEEGGGEEECCTTSCCCCCGGGEEEGGGHHHHHHHHHTTCCCBCCEEE
T ss_pred             cccceeeeecc--------ccccceeEEEEehHHeEEcCcccchHHHHHHHHHHHHHHHHHHHHHhCCCCCCEEEe
Confidence            99999976432        3699999999999999999999988755  445777778888887788999999998

>d1h2ba1 b.35.1.2 (A:17-154,A:327-359) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=99.96  E-value=2.8e-29  Score=215.47  Aligned_cols=150  Identities=23%  Similarity=0.324  Sum_probs=131.2

Q ss_pred             eEEEEcccCCcceEEEeccccCCCC-CCCeEEEEEeEEecChHhHHhhcCCCCC-CCCCCCCcCCCceeEEEEEeCCCCC
Q 016265           85 KAWLYGEYGGVDVLKFDEKVTVPQV-KEDQVLIKVVAAALNPVDGKRRQGKFKA-TDSPLPTVPGYDVAGVVVKVGTQVK  162 (392)
Q Consensus        85 ka~v~~~~~~~~~l~~~~~~~~p~~-~~~eVlV~v~~~~i~~~D~~~~~g~~~~-~~~~~p~v~G~e~~G~V~~vG~~v~  162 (392)
                      ||+++++++++  ++++ +++.|++ ++||||||+.++|||++|++.+.|.++. ....+|.++|||++|+|+++|++|+
T Consensus         1 kA~~~~~~g~p--l~i~-~v~~P~~~~~~eVlVkv~a~gic~sD~~~~~g~~~~~~~~~~P~v~GhE~~G~V~~vG~~v~   77 (171)
T d1h2ba1           1 KAARLHEYNKP--LRIE-DVDYPRLEGRFDVIVRIAGAGVCHTDLHLVQGMWHELLQPKLPYTLGHENVGYIEEVAEGVE   77 (171)
T ss_dssp             CEEEESSTTSC--CEEE-CCCCCCCBTTBCEEEEEEEEECCHHHHHHHHTTTHHHHCCCSSEECCCCEEEEEEEECTTCC
T ss_pred             CEEEEEeCCCC--CEEE-EeeCCCCCCCCEEEEEEEecccceeeehccCCCcccccCCccccccceeeeeeeecccCCCC
Confidence            79999999987  7888 8999986 6899999999999999999999987642 2346789999999999999999999


Q ss_pred             CCCCCCEEEeccccc------------------ccCCCCCCCcceeEEEecCCceeeCCCCCCHHhHhccchhHHHHHHH
Q 016265          163 EFKEGDEVYGDINEK------------------ALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEG  224 (392)
Q Consensus       163 ~~~vGdrV~~~~~~~------------------~~~~~~~~G~~a~~~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~a  224 (392)
                      ++++||||+......                  ...|...+|+|+||+.+++++++++|++++++.++++.+++.|+|++
T Consensus        78 ~~~~GdrV~~~~~~~cg~~~~c~~g~~~~c~~~~~~g~~~~G~~aey~~v~~~~~~~iP~~~~~e~aa~~~~~~~ta~~a  157 (171)
T d1h2ba1          78 GLEKGDPVILHPAVTDGTCLACRAGEDMHCENLEFPGLNIDGGFAEFMRTSHRSVIKLPKDVRVEVDIHKLDEINDVLER  157 (171)
T ss_dssp             SCCTTCEEEECSCBCCSCSHHHHTTCGGGCTTCBCBTTTBCCSSBSEEEECGGGEEECCTTCCCCEEEEEGGGHHHHHHH
T ss_pred             cCCCCCEEEEcCccCCCCcccccccccccccccccceeecccccceeeeehhhcceecCCCCCHHHHHHHHhHHHHHHHH
Confidence            999999998754321                  12445568999999999999999999999998888888999999999


Q ss_pred             HHhcCCCCCCeEEE
Q 016265          225 LERTGFSAGKSILV  238 (392)
Q Consensus       225 l~~~~~~~g~~VlI  238 (392)
                      ++++++ .|++|||
T Consensus       158 l~~~~~-~G~~VlI  170 (171)
T d1h2ba1         158 LEKGEV-LGRAVLI  170 (171)
T ss_dssp             HHTTCC-SSEEEEE
T ss_pred             HHhcCC-CCCEEEe
Confidence            998888 8999998

>d1rjwa1 b.35.1.2 (A:1-137,A:306-339) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.96  E-value=6.9e-29  Score=213.23  Aligned_cols=150  Identities=25%  Similarity=0.371  Sum_probs=125.5

Q ss_pred             eeEEEEcccCCcceEEEeccccCCCCCCCeEEEEEeEEecChHhHHhhcCCCCCCCCCCCCcCCCceeEEEEEeCCCCCC
Q 016265           84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKE  163 (392)
Q Consensus        84 mka~v~~~~~~~~~l~~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~~~p~v~G~e~~G~V~~vG~~v~~  163 (392)
                      |||+++++++++  ++++ +++.|+|++|||||||+++|||++|++.+++... ....+|.++|||++|+|+++|+++++
T Consensus         1 MkA~v~~~~g~p--l~i~-~v~~P~~~~~eVlVkv~a~gic~sD~~~~~~~~~-~~~~~p~v~GhE~~G~Vv~vG~~v~~   76 (171)
T d1rjwa1           1 MKAAVVEQFKEP--LKIK-EVEKPTISYGEVLVRIKACGVCHTDLHAAHGDWP-VKPKLPLIPGHEGVGIVEEVGPGVTH   76 (171)
T ss_dssp             CEEEEBSSTTSC--CEEE-ECCCCCCCTTEEEEEEEEEEECHHHHHHHHTCSS-SCCCSSBCCCSCEEEEEEEECTTCCS
T ss_pred             CeEEEEecCCCC--cEEE-EeECCCCCCCeEEEEEEEeeccccceeeeecccc-cccccccccCCEEEEEEEEecccccC
Confidence            899999998876  7888 8999999999999999999999999998887643 34568899999999999999999999


Q ss_pred             CCCCCEEEecccc-------------------cccCCCCCCCcceeEEEecCCceeeCCCCCCHHhHhccchhHHHHHHH
Q 016265          164 FKEGDEVYGDINE-------------------KALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEG  224 (392)
Q Consensus       164 ~~vGdrV~~~~~~-------------------~~~~~~~~~G~~a~~~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~a  224 (392)
                      +++||||+.....                   ....|...+|+|+||+++++++++++|++++++.|+ +. .+.++++.
T Consensus        77 ~~vGdrV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~G~~aey~~v~~~~~~~iP~~~~~e~A~-l~-~~~~~~~~  154 (171)
T d1rjwa1          77 LKVGDRVGIPWLYSACGHCDYCLSGQETLCEHQKNAGYSVDGGYAEYCRAAADYVVKIPDNTIIEVQP-LE-KINEVFDR  154 (171)
T ss_dssp             CCTTCEEEECSEEECCSCSHHHHTTCGGGCTTCEEBTTTBCCSSBSEEEEEGGGCEECCTTCCEEEEE-GG-GHHHHHHH
T ss_pred             ceeeeEEeeccccccccccccccCCCccccccccccceeccCccccceEecHHHEEECCCCCCHHHHH-HH-HHHHHHHH
Confidence            9999999754321                   112455667999999999999999999999987654 32 34567888


Q ss_pred             HHhcCCCCCCeEEEEc
Q 016265          225 LERTGFSAGKSILVLN  240 (392)
Q Consensus       225 l~~~~~~~g~~VlI~G  240 (392)
                      +.++.+ +|++|||+|
T Consensus       155 ~~~~~~-~G~tVlViG  169 (171)
T d1rjwa1         155 MLKGQI-NGRVVLTLE  169 (171)
T ss_dssp             HHTTCC-SSEEEEECC
T ss_pred             HHhcCC-CCCEEEEeC
Confidence            776666 599999997

>d1e3ia1 b.35.1.2 (A:1-167,A:342-376) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=99.96  E-value=4.7e-29  Score=219.97  Aligned_cols=155  Identities=27%  Similarity=0.312  Sum_probs=131.2

Q ss_pred             CCCCcceeEEEEcccCCcceEEEeccccCCCCCCCeEEEEEeEEecChHhHHhhcCCCCCCCCCCCCcCCCceeEEEEEe
Q 016265           78 GTVPSEMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKV  157 (392)
Q Consensus        78 ~~~p~~mka~v~~~~~~~~~l~~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~~~p~v~G~e~~G~V~~v  157 (392)
                      +..|.+|||+++.+++++  ++++ |+|.|+|+++||||||.++|||++|++.++|.++   ..+|.++|||++|+|+++
T Consensus         3 ~~~~~~~KAaV~~~~g~p--l~i~-evp~P~p~~geVlVkv~a~gic~sD~~~~~G~~~---~~~P~v~GHE~~G~V~~v   76 (202)
T d1e3ia1           3 QGKVIKCKAAIAWKTGSP--LCIE-EIEVSPPKACEVRIQVIATCVCPTDINATDPKKK---ALFPVVLGHECAGIVESV   76 (202)
T ss_dssp             TTSCEEEEEEEBCSTTSC--CEEE-EEEECCCCTTEEEEEEEEEECCHHHHHTTCTTSC---CCSSBCCCCEEEEEEEEE
T ss_pred             CCCeEEEEEEEEccCCCC--CEEE-EEECCCCCCCEEEEEEEEEEEeccccceeeeecc---cccccccccccceEEeee
Confidence            456789999999999876  7888 8999999999999999999999999999999864   457999999999999999


Q ss_pred             CCCCCCCCCCCEEEeccccccc-------------------------------------------CCCCCCCcceeEEEe
Q 016265          158 GTQVKEFKEGDEVYGDINEKAL-------------------------------------------EGPKQFGSLAEYTAV  194 (392)
Q Consensus       158 G~~v~~~~vGdrV~~~~~~~~~-------------------------------------------~~~~~~G~~a~~~~v  194 (392)
                      |++|+++++||||+......+.                                           .+....|+|+||+++
T Consensus        77 G~~V~~~~~GdrV~~~~~~~c~~c~~c~~g~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~G~faey~~v  156 (202)
T d1e3ia1          77 GPGVTNFKPGDKVIPFFAPQCKRCKLCLSPLTNLCGKLRNFKYPTIDQELMEDRTSRFTCKGRSIYHFMGVSSFSQYTVV  156 (202)
T ss_dssp             CTTCCSCCTTCEEEECSSCCCSSSHHHHCTTCCCCTTCCCSSCGGGSSCSCTTSCCSEEETTEEEBCCTTTCCSBSEEEE
T ss_pred             cCCceeccCCCEEEEEeeccccccccccCCcccccccccccccCccceecccccccccccCceeeecccccCCceEEEEE
Confidence            9999999999999875321100                                           011124899999999


Q ss_pred             cCCceeeCCCCCCHHhHhccchhHHHHHHHHHhcCCCCCCeEEEEc
Q 016265          195 EERLLAPKPKNLDFVQAAGLPLAIETAYEGLERTGFSAGKSILVLN  240 (392)
Q Consensus       195 ~~~~~~~iP~~l~~~~aa~l~~~~~ta~~al~~~~~~~g~~VlI~G  240 (392)
                      ++.+++++|++++++.++++.+++.+++++++.  +++|++|.|+.
T Consensus       157 ~~~~l~~lP~~~~~~~~~~~~~~~~~~~~a~~~--~k~G~~V~vi~  200 (202)
T d1e3ia1         157 SEANLARVDDEFDLDLLVTHALPFESINDAIDL--MKEGKSIRTIL  200 (202)
T ss_dssp             EGGGEEECCTTSCGGGGEEEEEEGGGHHHHHHH--HHTTCCSEEEE
T ss_pred             ehhhEEECCCCCCHHHHHHHHHHHHHHHHHHHh--CCCCCEEEEEE
Confidence            999999999999999888888888888888865  46899998864

>d1cdoa1 b.35.1.2 (A:1-164,A:340-374) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=99.96  E-value=6.4e-29  Score=218.45  Aligned_cols=154  Identities=19%  Similarity=0.207  Sum_probs=131.7

Q ss_pred             CcceeEEEEcccCCcceEEEeccccCCCCCCCeEEEEEeEEecChHhHHhhcCCCCCCCCCCCCcCCCceeEEEEEeCCC
Q 016265           81 PSEMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQ  160 (392)
Q Consensus        81 p~~mka~v~~~~~~~~~l~~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~~~p~v~G~e~~G~V~~vG~~  160 (392)
                      +.++||+++.+++.+  ++++ |++.|+|++|||||||.++|||++|++.+.|...  ...+|.++|||++|+|+++|++
T Consensus         6 ~~~~kAav~~~~~~p--l~i~-ev~~P~p~~~eVlIkv~a~giCgsD~~~~~g~~~--~~~~p~i~GhE~~G~v~~vG~~   80 (199)
T d1cdoa1           6 VIKCKAAVAWEANKP--LVIE-EIEVDVPHANEIRIKIIATGVCHTDLYHLFEGKH--KDGFPVVLGHEGAGIVESVGPG   80 (199)
T ss_dssp             CEEEEEEEBCSTTSC--CEEE-EEEECCCCTTEEEEEEEEEECCHHHHHHHHTTCC--TTSCSEECCCCEEEEEEEECTT
T ss_pred             ceEEEEEEEecCCCC--cEEE-EEECCCCCCCEEEEEEEEEEEecchhhhhhhccc--ccccccccccccceEEEEEcCC
Confidence            466789999988876  7888 8999999999999999999999999999999753  3467999999999999999999


Q ss_pred             CCCCCCCCEEEeccccccc--------------------------C-------------CCCCCCcceeEEEecCCceee
Q 016265          161 VKEFKEGDEVYGDINEKAL--------------------------E-------------GPKQFGSLAEYTAVEERLLAP  201 (392)
Q Consensus       161 v~~~~vGdrV~~~~~~~~~--------------------------~-------------~~~~~G~~a~~~~v~~~~~~~  201 (392)
                      +++|++||||+......+.                          .             +....|+|+||++++++.+++
T Consensus        81 v~~~~~GdrV~~~~~~~cg~c~~C~~g~~~~C~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~Ggfaey~~v~~~~~~~  160 (199)
T d1cdoa1          81 VTEFQPGEKVIPLFISQCGECRFCQSPKTNQCVKGWANESPDVMSPKETRFTCKGRKVLQFLGTSTFSQYTVVNQIAVAK  160 (199)
T ss_dssp             CCSCCTTCEEEECSSCCCSSSHHHHCTTCCCCSCSGGGTCTTTTSCSCCCEEETTEEEEEGGGTCCSBSEEEEEGGGEEE
T ss_pred             CceecCCCEEEEeeeccccccccccCCCcccccccccccccccccCcccceeeccceeecccccCCceEEEEEchHHEEE
Confidence            9999999999775331100                          0             000149999999999999999


Q ss_pred             CCCCCCHHhHhccchhHHHHHHHHHh-cCCCCCCeEEEE
Q 016265          202 KPKNLDFVQAAGLPLAIETAYEGLER-TGFSAGKSILVL  239 (392)
Q Consensus       202 iP~~l~~~~aa~l~~~~~ta~~al~~-~~~~~g~~VlI~  239 (392)
                      +|+++++++++++.+++.|+++++.. ...+.|++|||+
T Consensus       161 iP~~~~~~~aa~l~~~l~t~~~av~~~~~~~~G~tVlv~  199 (199)
T d1cdoa1         161 IDPSVKLDEFITHRMPLESVNDAIDLMKHGKCIRTVLSL  199 (199)
T ss_dssp             CCTTSCCGGGEEEEEEGGGHHHHHHHHHTTCCSEEEEEC
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCCCEEEeC
Confidence            99999999999999999999999965 577899999984

>d1pl8a1 b.35.1.2 (A:1-145,A:317-356) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1.1e-28  Score=214.37  Aligned_cols=154  Identities=21%  Similarity=0.274  Sum_probs=127.7

Q ss_pred             ceeEEEEcccCCcceEEEeccccCCCCCCCeEEEEEeEEecChHhHHhhcCCC-CCCCCCCCCcCCCceeEEEEEeCCCC
Q 016265           83 EMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKF-KATDSPLPTVPGYDVAGVVVKVGTQV  161 (392)
Q Consensus        83 ~mka~v~~~~~~~~~l~~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~g~~-~~~~~~~p~v~G~e~~G~V~~vG~~v  161 (392)
                      .|+|+|++++++   ++++ +++.|+|++|||||||.++|||++|++.+++.. .....++|.++|||++|+|+++|+++
T Consensus         7 ~~~a~V~~gp~~---l~l~-evp~P~p~~~eVlVkv~a~gic~sD~~~~~~~~~~~~~~~~p~i~GhE~~G~V~~vG~~v   82 (185)
T d1pl8a1           7 NNLSLVVHGPGD---LRLE-NYPIPEPGPNEVLLRMHSVGICGSDVHYWEYGRIGNFIVKKPMVLGHEASGTVEKVGSSV   82 (185)
T ss_dssp             CCEEEEEEETTE---EEEE-ECCCCCCCTTEEEEEEEEEEECHHHHHHHHHSEETTEECSSCEECCCEEEEEEEEECTTC
T ss_pred             CCEEEEEeCCCe---EEEE-EeECCCCCCCEEEEEEEEEEeeCchhhhhccccccccCCCCCeeeeeeeeeeEEEeccce
Confidence            478999998875   8888 899999999999999999999999999987542 22235678999999999999999999


Q ss_pred             CCCCCCCEEEecccccc-------------------cCCCCCCCcceeEEEecCCceeeCCCCCCHHhHhccchhHHHHH
Q 016265          162 KEFKEGDEVYGDINEKA-------------------LEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAY  222 (392)
Q Consensus       162 ~~~~vGdrV~~~~~~~~-------------------~~~~~~~G~~a~~~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~  222 (392)
                      ++|++||||+......+                   ..+...+|+|+||+++++++++++|+++++++++.++++  +|+
T Consensus        83 ~~~~~GdrV~~~~~~~cg~c~~c~~G~~~~c~~~~~~g~~~~~G~~aey~~~~~~~~~~lP~~~~~~~aa~~pl~--~a~  160 (185)
T d1pl8a1          83 KHLKPGDRVAIEPGAPRENDEFCKMGRYNLSPSIFFCATPPDDGNLCRFYKHNAAFCYKLPDNVKPLVTHRFPLE--KAL  160 (185)
T ss_dssp             CSCCTTCEEEECSEECSSCCHHHHTTCGGGCTTCEETTBTTBCCSCBSEEEEEGGGEEECCTTCGGGEEEEEEGG--GHH
T ss_pred             eeecccccceecceeccccchhhccchhchhccceeeecccccccceEEEEEchHHEEECCCCCCHHHHHHHHHH--HHH
Confidence            99999999986532110                   122345789999999999999999999999998876654  477


Q ss_pred             HHHHhcCCCCCCeEEEEcCCCc
Q 016265          223 EGLERTGFSAGKSILVLNGSGG  244 (392)
Q Consensus       223 ~al~~~~~~~g~~VlI~Ga~G~  244 (392)
                      ++++.+++++|++||| | +|+
T Consensus       161 ~a~~~~~~~~G~~VlI-g-~GP  180 (185)
T d1pl8a1         161 EAFETFKKGLGLKIML-K-CDP  180 (185)
T ss_dssp             HHHHHHHTTCCSEEEE-E-CCT
T ss_pred             HHHHHhCCCCCCEEEE-E-eCC
Confidence            8888888999999998 4 454

>d1xa0a1 b.35.1.2 (A:1-118,A:295-328) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.95  E-value=3e-28  Score=204.97  Aligned_cols=150  Identities=29%  Similarity=0.399  Sum_probs=128.7

Q ss_pred             cceeEEEEcccCCcceEEEeccccCCCCCCCeEEEEEeEEecChHhHHhhcCCCCCCCCCCCCcCCCceeEEEEEeCCCC
Q 016265           82 SEMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQV  161 (392)
Q Consensus        82 ~~mka~v~~~~~~~~~l~~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~~~p~v~G~e~~G~V~~vG~~v  161 (392)
                      ++|||++++++++...++++ +++.|+|++|||||||.++|||++|++.+.|.++. ...+|.++|||++|+|++  ..+
T Consensus         2 ~~~KA~v~~~~~~~~~~~i~-~v~~P~~~~~eVlVkV~a~gin~~D~~~~~g~~~~-~~~~p~v~g~e~~G~v~~--~~~   77 (152)
T d1xa0a1           2 SAFQAFVVNKTETEFTAGVQ-TISMDDLPEGDVLVRVHYSSVNYKDGLASIPDGKI-VKTYPFVPGIDLAGVVVS--SQH   77 (152)
T ss_dssp             CEEEEEEEEEETTEEEEEEE-EEEGGGSCSCSEEEEEEEEECCHHHHHHTSGGGSS-CCSSSBCCCSEEEEEEEE--CCS
T ss_pred             CceEEEEEEecCCceEEEEE-EccCCCCCCCEEEEEEEEeCCChHHHHHHhhcccc-cccccceeeeeeeeeeec--cCC
Confidence            46999999999998778888 99999999999999999999999999999887653 346789999999999998  557


Q ss_pred             CCCCCCCEEEecccccccCCCCCCCcceeEEEecCCceeeCCCCCCHHhHhccchhHHHHHHHH-HhcCCCCCCeEEEEc
Q 016265          162 KEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGL-ERTGFSAGKSILVLN  240 (392)
Q Consensus       162 ~~~~vGdrV~~~~~~~~~~~~~~~G~~a~~~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~al-~~~~~~~g~~VlI~G  240 (392)
                      ..|++||+|++.....   +...+|+|+||+++++++++++|+++++ +|++++++.+|+|.++ .+.+++ |++|||+|
T Consensus        78 ~~~~~g~~v~~~~~~~---~~~~~G~~aEy~~v~~~~~~~iP~~l~~-~aa~l~~a~~ta~~~~~~~~~~~-G~tVL~l~  152 (152)
T d1xa0a1          78 PRFREGDEVIATGYEI---GVTHFGGYSEYARLHGEWLVPLPKGLER-IAQEISLAELPQALKRILRGELR-GRTVVRLA  152 (152)
T ss_dssp             SSCCTTCEEEEESTTB---TTTBCCSSBSEEEECGGGCEECCTTHHH-HEEEEEGGGHHHHHHHHHHTCCC-SEEEEECC
T ss_pred             CccccCCEEEEecCcc---ccccCCCcceeeeehhhccccCCCCCCH-HHHHHHHHHHHHHHHHHHhcCCC-CCEEEEcC
Confidence            7899999999865422   2335799999999999999999999985 6888888888888877 456665 99999985

>d2fzwa1 b.35.1.2 (A:1-162,A:339-373) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=99.95  E-value=3.2e-28  Score=213.38  Aligned_cols=153  Identities=22%  Similarity=0.227  Sum_probs=130.2

Q ss_pred             cceeEEEEcccCCcceEEEeccccCCCCCCCeEEEEEeEEecChHhHHhhcCCCCCCCCCCCCcCCCceeEEEEEeCCCC
Q 016265           82 SEMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQV  161 (392)
Q Consensus        82 ~~mka~v~~~~~~~~~l~~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~~~p~v~G~e~~G~V~~vG~~v  161 (392)
                      .+|||+++.+++++  |+++ ++|.|+|+++||||||.++|||++|+++++|.++  ...+|.++|||++|+|+++|++|
T Consensus         5 ~~~kAav~~~~g~~--l~i~-evp~P~p~~~eVLVkv~a~gic~sD~~~~~G~~~--~~~~p~v~GhE~~G~V~~vG~~V   79 (197)
T d2fzwa1           5 IKCKAAVAWEAGKP--LSIE-EIEVAPPKAHEVRIKIIATAVCHTDAYTLSGADP--EGCFPVILGHLGAGIVESVGEGV   79 (197)
T ss_dssp             EEEEEEEBCSTTSC--CEEE-EEEECCCCTTEEEEEEEEEECCHHHHHHHHTCCT--TCCSSBCCCCEEEEEEEEECTTC
T ss_pred             eEEEEEEEccCCCC--CEEE-EEECCCCCCCEEEEEEEEecCCCCcHHHHcCCcc--cccccccCCcceeeEEEeecCCc
Confidence            46999999999887  7888 8999999999999999999999999999999764  35689999999999999999999


Q ss_pred             CCCCCCCEEEecccccc---------------------------------------cCCCCCCCcceeEEEecCCceeeC
Q 016265          162 KEFKEGDEVYGDINEKA---------------------------------------LEGPKQFGSLAEYTAVEERLLAPK  202 (392)
Q Consensus       162 ~~~~vGdrV~~~~~~~~---------------------------------------~~~~~~~G~~a~~~~v~~~~~~~i  202 (392)
                      +++++||||+......+                                       ..+...+|+|+||+++++.+++++
T Consensus        80 ~~~~~GdrV~v~~~~~cg~c~~c~~g~~~~C~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~g~GgfAey~vvp~~~~~~v  159 (197)
T d2fzwa1          80 TKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKGLMPDGTSRFTCKGKTILHYMGTSTFSEYTVVADISVAKI  159 (197)
T ss_dssp             CSCCTTCEEEECSSCCCSCSHHHHCTTCCCCCTTHHHHHTTCCTTSCCSEEETTEEEBCCTTTCCSBSEEEEEGGGEEEC
T ss_pred             eecCCCCEEEEccccccccccccccCccccCccccccccccccCCccceeccCCcceecccccccceeEEEechHHEEEC
Confidence            99999999986432100                                       011112489999999999999999


Q ss_pred             CCCCCHHhHhccchhHHHHHHHHHhcC-CCCCCeEEEE
Q 016265          203 PKNLDFVQAAGLPLAIETAYEGLERTG-FSAGKSILVL  239 (392)
Q Consensus       203 P~~l~~~~aa~l~~~~~ta~~al~~~~-~~~g~~VlI~  239 (392)
                      |+++++++++.+++++.|++.++++.+ -+.+++|||+
T Consensus       160 p~~l~~~~aa~~~~~~~t~~~a~~~~~~g~~~~tvvvi  197 (197)
T d2fzwa1         160 DPLIKVDEFVTHNLSFDEINKAFELMHSGKSIRTVVKI  197 (197)
T ss_dssp             CTTSCSGGGEEEEEEGGGHHHHHHHHHHTCCSEEEEEC
T ss_pred             CCCCCHHHHhhhhhHHHHHHHHHHhccCCCcCCEEEeC
Confidence            999999999999999999999996543 4678999884

>d1vj0a1 b.35.1.2 (A:2-155,A:338-367) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=99.95  E-value=5.4e-28  Score=209.06  Aligned_cols=150  Identities=18%  Similarity=0.283  Sum_probs=124.8

Q ss_pred             CCcceeEEEEcccCCcceEEEeccccCCCCCCCeEEEEEeEEecChHhHHhhcCCCCCCCCCCCCcCCCceeEEEEEeCC
Q 016265           80 VPSEMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGT  159 (392)
Q Consensus        80 ~p~~mka~v~~~~~~~~~l~~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~~~p~v~G~e~~G~V~~vG~  159 (392)
                      |+.+|||+++++++++  ++++ +++.|+|++|||||||.++|||++|+++++|.++.  .++|+++|||++|+|+++|+
T Consensus         1 m~~k~kA~v~~~~~~p--l~i~-ev~~P~~~~~evlVkv~a~gIC~sD~~~~~G~~~~--~~~P~vlGHE~~G~V~~vG~   75 (184)
T d1vj0a1           1 MGLKAHAMVLEKFNQP--LVYK-EFEISDIPRGSILVEILSAGVCGSDVHMFRGEDPR--VPLPIILGHEGAGRVVEVNG   75 (184)
T ss_dssp             CCEEEEEEEBCSTTSC--CEEE-EEEECCCCTTCEEEEEEEEEECHHHHHHHTTCCTT--CCSSBCCCCEEEEEEEEESS
T ss_pred             CCceEEEEEEecCCCC--cEEE-EeeCCCCCCCEEEEEEEEECCCCCchhheeccCCc--cccccccceeeeeeeeEEec
Confidence            6788999999998876  7888 89999999999999999999999999999998753  46899999999999999999


Q ss_pred             CCC-----CCCCCCEEEeccccc-------------c------cCC--------CCCCCcceeEEEec-CCceeeCCCCC
Q 016265          160 QVK-----EFKEGDEVYGDINEK-------------A------LEG--------PKQFGSLAEYTAVE-ERLLAPKPKNL  206 (392)
Q Consensus       160 ~v~-----~~~vGdrV~~~~~~~-------------~------~~~--------~~~~G~~a~~~~v~-~~~~~~iP~~l  206 (392)
                      +|+     ++++||||+......             .      ..|        ...+|+|+||++++ +.+++++|+++
T Consensus        76 ~v~~~~~~~~~~Gd~V~~~~~~~Cg~C~~C~~g~~~~~c~~~~~~G~~~~~~~~~~~~Gg~ae~~~v~~~~~v~~ip~~l  155 (184)
T d1vj0a1          76 EKRDLNGELLKPGDLIVWNRGITCGECYWCKVSKEPYLCPNRKVYGINRGCSEYPHLRGCYSSHIVLDPETDVLKVSEKI  155 (184)
T ss_dssp             CCBCTTSCBCCTTCEEEECSEECCSSSHHHHTSCCGGGCTTCEETTTTCCSSSTTCCCSSSBSEEEECTTCCEEEECTTC
T ss_pred             cccccccccccceeeeEeccccccccChhHhCccccccCCCceeeccCCCCCCCCCcceeCcCcEEechhHcEEECCCCC
Confidence            986     468999998643210             0      111        23479999999995 67999999999


Q ss_pred             CHHhHhccchhHHHHHHHHHhcCCCCCCeEEEEc
Q 016265          207 DFVQAAGLPLAIETAYEGLERTGFSAGKSILVLN  240 (392)
Q Consensus       207 ~~~~aa~l~~~~~ta~~al~~~~~~~g~~VlI~G  240 (392)
                      ++++    ++  .+|+++++++++++|++|||+.
T Consensus       156 ~~~~----pl--~~A~~a~~~~~~~~G~~VlI~~  183 (184)
T d1vj0a1         156 THRL----PL--KEANKALELMESREALKVILYP  183 (184)
T ss_dssp             CEEE----EG--GGHHHHHHHHHHTSCSCEEEEC
T ss_pred             CHHH----HH--HHHHHHHHHhCCCcCCEEEEee
Confidence            9753    22  3588899999999999999983

>d1f8fa1 b.35.1.2 (A:4-162,A:337-371) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=99.95  E-value=1.7e-27  Score=208.05  Aligned_cols=152  Identities=23%  Similarity=0.309  Sum_probs=125.5

Q ss_pred             cceeEEEEcccCCcceEEEeccccCCCCCCCeEEEEEeEEecChHhHHhhcCCCCCCCCCCCCcCCCceeEEEEEeCCCC
Q 016265           82 SEMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQV  161 (392)
Q Consensus        82 ~~mka~v~~~~~~~~~l~~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~~~p~v~G~e~~G~V~~vG~~v  161 (392)
                      .+|+|+++.+.+++  |+++ +++.|+|++||||||+.++|||++|++.+.|.++   .++|.++|||++|+|+++|++|
T Consensus         2 k~~~Aav~~~~g~~--l~l~-~v~~P~p~~geVlVkv~a~gic~sD~~~~~G~~~---~~~P~i~GHE~~G~V~~vG~~v   75 (194)
T d1f8fa1           2 KDIIAAVTPCKGAD--FELQ-ALKIRQPQGDEVLVKVVATGMCHTDLIVRDQKYP---VPLPAVLGHEGSGIIEAIGPNV   75 (194)
T ss_dssp             EEEEEEEBCSTTCC--CEEE-EEEECCCCTTEEEEEEEEEECCHHHHHHHTTSSC---CCSSBCCCCEEEEEEEEECTTC
T ss_pred             ceeEEEEEcCCCCC--cEEE-EeeCCCCCCCEEEEEEEEEEecCchHhhhhhccc---ccCCcccccceEEEeeecCccc
Confidence            35889999888866  7888 8999999999999999999999999999999864   4689999999999999999999


Q ss_pred             CCCCCCCEEEeccccc--------------------ccCCC--------------------CCCCcceeEEEecCCceee
Q 016265          162 KEFKEGDEVYGDINEK--------------------ALEGP--------------------KQFGSLAEYTAVEERLLAP  201 (392)
Q Consensus       162 ~~~~vGdrV~~~~~~~--------------------~~~~~--------------------~~~G~~a~~~~v~~~~~~~  201 (392)
                      ++|++||||+.....+                    ...|.                    ...|+|+||.++++.++++
T Consensus        76 ~~~~vGDrVv~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~g~~~dg~~~~~~~~~~~~~~~~~~~g~fae~~~v~~~~~~~  155 (194)
T d1f8fa1          76 TELQVGDHVVLSYGYCGKCTQCNTGNPAYCSEFFGRNFSGADSEGNHALCTHDQGVVNDHFFAQSSFATYALSRENNTVK  155 (194)
T ss_dssp             CSCCTTCEEEECCCCCSSSHHHHTTCGGGCTTHHHHSSSSSCSSSCCSBC------CBCCGGGTCCSBSEEEEEGGGEEE
T ss_pred             eeEccCceeeeecccccCChhhhCCCcccccccccceeccccccceeeeecCCceeeccccccccccceeEEEehHHEEE
Confidence            9999999997643210                    00110                    0137899999999999999


Q ss_pred             CCCCCCHHhHhccchhHHHHHHHHHhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEe
Q 016265          202 KPKNLDFVQAAGLPLAIETAYEGLERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAAT  265 (392)
Q Consensus       202 iP~~l~~~~aa~l~~~~~ta~~al~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~  265 (392)
                      +|++++++++                        +++.| +|++|++|+|+|+.+ |++.++++
T Consensus       156 ip~~i~~~~~------------------------~~i~g-~g~~g~~aiq~a~~~-g~~~iiaV  193 (194)
T d1f8fa1         156 VTKDFPFDQL------------------------VKFYA-FDEINQAAIDSRKGI-TLKPIIKI  193 (194)
T ss_dssp             ECTTCCGGGG------------------------EEEEE-GGGHHHHHHHHHHTS-CSEEEEEC
T ss_pred             CCCCCCcccE------------------------EEEeC-cHHHHHHHHHHHHHc-CCCEEEEe
Confidence            9999886543                        34454 999999999999985 88877664

>d1iz0a1 b.35.1.2 (A:1-98,A:270-302) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=99.95  E-value=6.7e-28  Score=196.99  Aligned_cols=131  Identities=33%  Similarity=0.480  Sum_probs=117.8

Q ss_pred             eeEEEEcccCCcceEEEeccccCCCCCCCeEEEEEeEEecChHhHHhhcCCCCCCCCCCCCcCCCceeEEEEEeCCCCCC
Q 016265           84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKE  163 (392)
Q Consensus        84 mka~v~~~~~~~~~l~~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~~~p~v~G~e~~G~V~~vG~~v~~  163 (392)
                      |||++++++|++  ++++ +++.|.|++|||+||+.++|||++|++.++|.++. ...+|.++|||++|+|         
T Consensus         1 MkA~~~~~~G~~--l~~~-e~~~p~p~~~eVlVkv~a~gin~~D~~~~~G~~~~-~~~~P~v~G~E~~G~V---------   67 (131)
T d1iz0a1           1 MKAWVLKRLGGP--LELV-DLPEPEAEEGEVVLRVEAVGLNFADHLMRLGAYLT-RLHPPFIPGMEVVGVV---------   67 (131)
T ss_dssp             CEEEEECSTTSC--EEEE-ECCCCCCCTTEEEEEEEEEEECHHHHHHHHTCSSS-CCCSSBCCCCEEEEEE---------
T ss_pred             CcEEEEccCCCC--CEEE-EccCCCCCCCEEEEEEEEEeccccccccccccccc-cccceeEeeeeeEEee---------
Confidence            899999999876  7888 89999999999999999999999999999998753 3568999999999999         


Q ss_pred             CCCCCEEEecccccccCCCCCCCcceeEEEecCCceeeCCCCCCHHhHhccchhHHHHHHHHHhcCCCCCCeEEEE
Q 016265          164 FKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLERTGFSAGKSILVL  239 (392)
Q Consensus       164 ~~vGdrV~~~~~~~~~~~~~~~G~~a~~~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~al~~~~~~~g~~VlI~  239 (392)
                        +||||++...         +|+|+||++++++.++++|+++++++||++++++.|||++|.+.. +.|++||++
T Consensus        68 --vGd~V~~~~~---------~G~~aey~~v~~~~~~~~P~~~~~~~aa~~~~~~~Ta~~al~~~g-~~g~tvl~l  131 (131)
T d1iz0a1          68 --EGRRYAALVP---------QGGLAERVAVPKGALLPLPEGRPVVGPVFPFAEAEAAFRALLDRG-HTGKVVVRL  131 (131)
T ss_dssp             --TTEEEEEECS---------SCCSBSEEEEEGGGCEECCTTCCCEEEEEEGGGHHHHHHHTTCTT-CCBEEEEEC
T ss_pred             --ccceEEEEec---------cCccceeeeeCHHHeEEccCCCCHHHHHHHHHHHHHHHHHHHhcc-cCCCEEEEC
Confidence              4999998753         699999999999999999999999999999999999999995432 569999874

>d1jvba1 b.35.1.2 (A:1-143,A:314-347) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.95  E-value=1.3e-27  Score=206.29  Aligned_cols=150  Identities=29%  Similarity=0.346  Sum_probs=123.2

Q ss_pred             eeEEEEcccCCcceEEEeccccCCCCCCCeEEEEEeEEecChHhHHhhcCCCCC------CCCCCCCcCCCceeEEEEEe
Q 016265           84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKA------TDSPLPTVPGYDVAGVVVKV  157 (392)
Q Consensus        84 mka~v~~~~~~~~~l~~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~------~~~~~p~v~G~e~~G~V~~v  157 (392)
                      |||++++++|++  ++++ |++.|+|++||||||+.++|||++|++.++|.++.      ....+|+++|||++|+|+++
T Consensus         1 MKA~~~~~~G~p--l~i~-dv~~P~p~~~eVlVkv~a~gic~~D~~~~~G~~~~~~~~~~~~~~~P~v~GhE~~G~V~~~   77 (177)
T d1jvba1           1 MRAVRLVEIGKP--LSLQ-EIGVPKPKGPQVLIKVEAAGVCHSDVHMRQGRFGNLRIVEDLGVKLPVTLGHEIAGKIEEV   77 (177)
T ss_dssp             CEEEEECSTTSC--CEEE-ECCCCCCCTTCEEEEEEEEEECTHHHHHTTTEETTEETTTTTCCCSCEECCCEEEEEEEEE
T ss_pred             CeEEEEEeCCCC--CEEE-EeeCCCCCCCEEEEEEEEEecccceeeeecCcccccccccccccCCCccccceEEEEEeee
Confidence            899999999877  7888 89999999999999999999999999999997542      23468999999999999999


Q ss_pred             CCCCCCCCCCCEEEecccc------------------cccCCCCCCCcceeEEEecCCc-eeeCCCCCCHHhHhcc-chh
Q 016265          158 GTQVKEFKEGDEVYGDINE------------------KALEGPKQFGSLAEYTAVEERL-LAPKPKNLDFVQAAGL-PLA  217 (392)
Q Consensus       158 G~~v~~~~vGdrV~~~~~~------------------~~~~~~~~~G~~a~~~~v~~~~-~~~iP~~l~~~~aa~l-~~~  217 (392)
                      |+++++|++||||+.....                  ....|...+|+|+||+++++.. ++++|+..+ .+++++ ..+
T Consensus        78 g~~v~~~~~GdrV~~~~~~~c~~c~~~~~g~~~~c~~~~~~g~~~~G~~aey~~vp~~~~~~~~~~~~~-~~~a~~~~~~  156 (177)
T d1jvba1          78 GDEVVGYSKGDLVAVNPWQGEGNCYYCRIGEEHLCDSPRWLGINFDGAYAEYVIVPHYKYMYKLRRVKP-MITKTMKLEE  156 (177)
T ss_dssp             CTTCCSCCTTCEEEECCEECCSSSHHHHTTCGGGCSSCEEBTTTBCCSSBSEEEESCGGGEEECSSSCC-CCEEEEEGGG
T ss_pred             ccCccccccCceEeeeeccccccccccccccccccCCcceeeeccccccccEEEEEhHHeEEECCCCCh-HHHHHHHHHH
Confidence            9999999999999865321                  1123455679999999997665 556665544 455544 568


Q ss_pred             HHHHHHHHHhcCCCCCCeEEE
Q 016265          218 IETAYEGLERTGFSAGKSILV  238 (392)
Q Consensus       218 ~~ta~~al~~~~~~~g~~VlI  238 (392)
                      +.++++++..+++ .|++|||
T Consensus       157 ~~~a~~~~~~~~~-~G~~VlI  176 (177)
T d1jvba1         157 ANEAIDNLENFKA-IGRQVLI  176 (177)
T ss_dssp             HHHHHHHHHTTCC-CSEEEEE
T ss_pred             HHHHHHHHHhhcc-cCCceEC
Confidence            8899999998887 5999998

>d1jqba1 b.35.1.2 (A:1001-1139,A:1314-1351) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=99.94  E-value=4.7e-29  Score=214.71  Aligned_cols=150  Identities=19%  Similarity=0.222  Sum_probs=118.8

Q ss_pred             eeEEEEcccCCcceEEEeccccCCCCCCCeEEEEEeEEecChHhHHhhcCCCCCCCCCCCCcCCCceeEEEEEeCCCCCC
Q 016265           84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKE  163 (392)
Q Consensus        84 mka~v~~~~~~~~~l~~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~~~p~v~G~e~~G~V~~vG~~v~~  163 (392)
                      |||+++.++++   ++++ |.|.|+|+++|||||+.++|||++|++.+.+...  ...+|+++|||++|+|+++|++|++
T Consensus         1 MKa~v~~~~~~---l~i~-e~p~P~~~~~eVlIkv~a~gic~sD~~~~~~~~~--~~~~P~i~GhE~~G~V~~vG~~v~~   74 (177)
T d1jqba1           1 MKGFAMLGINK---LGWI-EKERPVAGSYDAIVRPLAVSPCTSDIHTVFEGAL--GDRKNMILGHEAVGEVVEVGSEVKD   74 (177)
T ss_dssp             CEEEEEEETTE---EEEE-ECCCCCCCTTCEEEEEEEECCCHHHHHHHHHCTT--CCCSSEECCCCEEEEEEEECTTCCS
T ss_pred             CeEEEEEeCCC---eEEE-EeeCCCCCCCEEEEEEEEEecCCCcccccccCCC--CCCCCccCcceeeEEeeecccccce
Confidence            89999999887   8888 8999999999999999999999999987765432  2467999999999999999999999


Q ss_pred             CCCCCEEEecccc---------------------cccCCCCCCCcceeEEEecC--CceeeCCCCCCHHhHhccchhHHH
Q 016265          164 FKEGDEVYGDINE---------------------KALEGPKQFGSLAEYTAVEE--RLLAPKPKNLDFVQAAGLPLAIET  220 (392)
Q Consensus       164 ~~vGdrV~~~~~~---------------------~~~~~~~~~G~~a~~~~v~~--~~~~~iP~~l~~~~aa~l~~~~~t  220 (392)
                      |++||||+.....                     .+..+...+|+|+||++++.  .+++++|+++++++++.....   
T Consensus        75 ~~vGdrV~v~~~~~cg~c~~C~~g~~~~c~~~~~~~~~g~~~~G~~aEy~~vp~a~~~l~~iP~~~~~~~~~~~~~~---  151 (177)
T d1jqba1          75 FKPGDRVIVPCTTPDWRSLEVQAGFQQHSNGMLAGWKFSNFKDGVFGEYFHVNDADMNLAILPKDVDLSKLVTHVYH---  151 (177)
T ss_dssp             CCTTCEEEECSCCCCSSSHHHHTTCGGGTTSTTTTCCBTTTBCCSSBSSEEESSHHHHCEECCTTSCGGGGEEEEEE---
T ss_pred             ecCCCcEEEeeeeccccccchhhhhhcccccccccccccCCCChhcCeeEEEEhhhCeEEECCCCcchHHHHHHHHH---
Confidence            9999999854321                     11234456799999999986  468999999999887655332   


Q ss_pred             HHHHHHhcCCCCCCeEEEEcCCCcHHHHHH
Q 016265          221 AYEGLERTGFSAGKSILVLNGSGGVGSLVI  250 (392)
Q Consensus       221 a~~al~~~~~~~g~~VlI~Ga~G~vG~~ai  250 (392)
                      +++.+       ++.|+|+| +|++|++++
T Consensus       152 ~~~~~-------~~~vlv~g-~gp~gl~aa  173 (177)
T d1jqba1         152 GFDHI-------EEALLLMK-DKPKDLIKA  173 (177)
T ss_dssp             SGGGH-------HHHHHHHH-HCCTTCSEE
T ss_pred             HHHHh-------cCceEEEC-CCHHHhhee
Confidence            22222       34577777 777776544

>d1kola1 b.35.1.2 (A:2-160,A:356-397) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=99.94  E-value=1.7e-29  Score=221.97  Aligned_cols=163  Identities=22%  Similarity=0.300  Sum_probs=131.7

Q ss_pred             eeEEEEcccCCcceEEEeccccCCCC-------CCCeEEEEEeEEecChHhHHhhcCCCCCCCCCCCCcCCCceeEEEEE
Q 016265           84 MKAWLYGEYGGVDVLKFDEKVTVPQV-------KEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVK  156 (392)
Q Consensus        84 mka~v~~~~~~~~~l~~~~~~~~p~~-------~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~~~p~v~G~e~~G~V~~  156 (392)
                      +||++++++++   ++++ |++.|++       ++|||+|||.++|||++|++.++|.++   ..+|+++|||++|+|++
T Consensus         2 ~kA~v~~~~~~---le~~-e~~~P~~~~p~~~p~~~eVlVkv~a~giC~sDl~~~~G~~~---~~~P~v~GHE~~G~Vv~   74 (201)
T d1kola1           2 NRGVVYLGSGK---VEVQ-KIDYPKMQDPRGKKIEHGVILKVVSTNICGSDQHMVRGRTT---AQVGLVLGHEITGEVIE   74 (201)
T ss_dssp             EEEEEEEETTE---EEEE-EECCCCSBCTTSCBCSSCEEEEEEEEECCHHHHHHHTTCSC---CCTTCBCCCCEEEEEEE
T ss_pred             cEEEEEeCCCc---eEEE-EecCCcccCCCCCCCCCEEEEEEEEEEEcchhhhhhcCCcc---cccceeccceeeeeeec
Confidence            69999999885   7888 8888865       469999999999999999999999864   46799999999999999


Q ss_pred             eCCCCCCCCCCCEEEeccccc--------------c--------------cCCCCCCCcceeEEEecC--CceeeCCCCC
Q 016265          157 VGTQVKEFKEGDEVYGDINEK--------------A--------------LEGPKQFGSLAEYTAVEE--RLLAPKPKNL  206 (392)
Q Consensus       157 vG~~v~~~~vGdrV~~~~~~~--------------~--------------~~~~~~~G~~a~~~~v~~--~~~~~iP~~l  206 (392)
                      +|++|++|++||||.......              +              ......+|+|+||+++|.  .+++++||+.
T Consensus        75 vG~~V~~~~vGdrV~v~~~~~Cg~C~~C~~g~~~~~~~~~~~~~~~~~g~~~~~~~~Gg~aeyv~vp~~~~~l~~iPd~~  154 (201)
T d1kola1          75 KGRDVENLQIGDLVSVPFNVACGRCRSCKEMHTGVCLTVNPARAGGAYGYVDMGDWTGGQAEYVLVPYADFNLLKLPDRD  154 (201)
T ss_dssp             ECTTCCSCCTTCEEECCSEECCSSSHHHHTTCGGGCSSSCSSSSCEEBTCTTSCCBCCCSBSEEEESSHHHHCEECSCHH
T ss_pred             cccccccccccceeEEeeeeeccCChhhhCCCcccccccccccccccccccCCCccccccccEEEeehHHCeEEECCCCC
Confidence            999999999999997543210              0              011245799999999985  3699999987


Q ss_pred             CHHhHhccchhHHHHHHHHHhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCC
Q 016265          207 DFVQAAGLPLAIETAYEGLERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGA  259 (392)
Q Consensus       207 ~~~~aa~l~~~~~ta~~al~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~  259 (392)
                      ++.+++++...+.++++++.+...+.|+    +| +|++|++++|+||. +||
T Consensus       155 ~~~~~~~~~~~~~~~~~a~~~~~~~~g~----~g-~G~vG~~~i~~ak~-~GA  201 (201)
T d1kola1         155 KAMEKINIAEVVGVQVISLDDAPRGYGE----FD-AGVPKKFVIDPHKT-FSA  201 (201)
T ss_dssp             HHHHTCCHHHHHTEEEECGGGHHHHHHH----HH-HTCSCEEEECTTCS-SCC
T ss_pred             ChHHHHHHHHHHHHHHHHHHhCCCCCeE----Ee-eCHHHHHHHHHHHH-cCC
Confidence            7777777777777788877665555554    46 99999999999997 475

>d2jhfa1 b.35.1.2 (A:1-163,A:340-374) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=99.94  E-value=1.6e-26  Score=203.00  Aligned_cols=155  Identities=24%  Similarity=0.293  Sum_probs=123.3

Q ss_pred             CCCCcceeEEEEcccCCcceEEEeccccCCCCCCCeEEEEEeEEecChHhHHhhcCCCCCCCCCCCCcCCCceeEEEEEe
Q 016265           78 GTVPSEMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKV  157 (392)
Q Consensus        78 ~~~p~~mka~v~~~~~~~~~l~~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~~~p~v~G~e~~G~V~~v  157 (392)
                      +..+.+|||+++.+++++  ++++ +++.|+|++|||||||.++|||++|++.++|.++   ..+|.++|||++|+|+++
T Consensus         3 ~~~~~k~KAavl~~~~~~--l~i~-ev~~P~p~~~eVlVkV~a~giC~sDl~~~~G~~~---~~~P~i~GHE~~G~Vv~v   76 (198)
T d2jhfa1           3 AGKVIKCKAAVLWEEKKP--FSIE-EVEVAPPKAHEVRIKMVATGICRSDDHVVSGTLV---TPLPVIAGHEAAGIVESI   76 (198)
T ss_dssp             TTSCEEEEEEEBCSTTSC--CEEE-EEEECCCCTTEEEEEEEEEECCHHHHHHHHTSSC---CCSSBCCCCSEEEEEEEE
T ss_pred             CCCceEEEEEEEecCCCC--CEEE-EEECCCCCCCEEEEEEEEEecccccceeecCCcc---cccceecccceeEEEEec
Confidence            345678999999988876  7888 8999999999999999999999999999999864   457999999999999999


Q ss_pred             CCCCCCCCCCCEEEeccccccc---------------------------------------CCCCCCCcceeEEEecCCc
Q 016265          158 GTQVKEFKEGDEVYGDINEKAL---------------------------------------EGPKQFGSLAEYTAVEERL  198 (392)
Q Consensus       158 G~~v~~~~vGdrV~~~~~~~~~---------------------------------------~~~~~~G~~a~~~~v~~~~  198 (392)
                      |++++++++||||+......+.                                       ......|+|+||+++++.+
T Consensus        77 G~~v~~~~vGdrV~v~~~~~c~~c~~c~~g~~~~C~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~G~fAEy~~v~~~~  156 (198)
T d2jhfa1          77 GEGVTTVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLKNDLSMPRGTMQDGTSRFTCRGKPIHHFLGTSTFSQYTVVDEIS  156 (198)
T ss_dssp             CTTCCSCCTTCEEEECSSCCCSCSHHHHSTTCCCCTTCSSSSCCCSCTTSCCSEEETTEEEBCSTTTCCSBSEEEEEGGG
T ss_pred             CccccCcCCCCEEEEeeeecccccccccCCccceeccccccccCccccCccccccccCceeccCCCCCcccCeEEeCHHH
Confidence            9999999999999775421110                                       0001238999999999999


Q ss_pred             eeeCCCCCCHHhHhccchhHHHHHHHHHhcCCCCCCeEEEEc
Q 016265          199 LAPKPKNLDFVQAAGLPLAIETAYEGLERTGFSAGKSILVLN  240 (392)
Q Consensus       199 ~~~iP~~l~~~~aa~l~~~~~ta~~al~~~~~~~g~~VlI~G  240 (392)
                      ++++|+.++++.++...+++.+...+.  ..+++|++|+|+.
T Consensus       157 ~~~~p~~~~~e~l~~~~~~~~~v~~g~--~~l~~G~~VaVi~  196 (198)
T d2jhfa1         157 VAKIDAAFALDPLITHVLPFEKINEGF--DLLRSGESIRTIL  196 (198)
T ss_dssp             EEECCTTSCCGGGEEEEEEGGGHHHHH--HHHHTTCCSEEEE
T ss_pred             eEECCCCCCHHHHHHHHHHHHhhhhCC--ceeeCCCEEEEEE
Confidence            999999999877666544443333332  2357899998863

>d1tt7a1 b.35.1.2 (A:2-127,A:295-330) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=99.94  E-value=1.6e-28  Score=208.91  Aligned_cols=157  Identities=28%  Similarity=0.287  Sum_probs=135.8

Q ss_pred             cceeEEEEcccCCcceEEEeccccCCCCCCCeEEEEEeEEecChHhHHhhcCCCCCCCCCCCCcCCCceeEEEEEeCCCC
Q 016265           82 SEMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQV  161 (392)
Q Consensus        82 ~~mka~v~~~~~~~~~l~~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~~~p~v~G~e~~G~V~~vG~~v  161 (392)
                      ++|||++++++++...++++ +++.|++++|||||||+|+|||++|++.+.|.++. ...+|.++|||++|+|++  +.+
T Consensus         2 ~~~ka~~~~~~g~~~~l~~~-~v~~p~l~~~eVLVkV~a~gin~~D~~~~~g~~~~-~~~~~~~~g~e~~G~v~~--~~~   77 (162)
T d1tt7a1           2 TLFQALQAEKNADDVSVHVK-TISTEDLPKDGVLIKVAYSGINYKDGLAGKAGGNI-VREYPLILGIDAAGTVVS--SND   77 (162)
T ss_dssp             CEEEEEEECCGGGSCCCEEE-EEESSSSCSSSEEEEECCEEECHHHHHHTSTTCTT-CSSCSEECCSEEEEEEEE--CSS
T ss_pred             CcEEEEEEEecCCCeEEEEE-EcCCCCCCCCEEEEEEEEecccchhhheeeecccc-cccceeeeeeeccccccc--ccc
Confidence            57999999999998889999 99999999999999999999999999999998753 346678999999999998  556


Q ss_pred             CCCCCCCEEEecccccccCCCCCCCcceeEEEecCCceeeCCCCCCHHhHhccchhHHHHHHHHHhcCCCCCCeEEEEcC
Q 016265          162 KEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLERTGFSAGKSILVLNG  241 (392)
Q Consensus       162 ~~~~vGdrV~~~~~~~~~~~~~~~G~~a~~~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~al~~~~~~~g~~VlI~Ga  241 (392)
                      .++++||+|++....   .+...+|+|+||++++++.++++|+++++++||.+++..+|||+++...+...+++|||+|+
T Consensus        78 ~~~~~g~~v~~~~~~---~g~~~~G~~aey~~v~~~~l~~iP~~ls~~~Aa~~~~~~~ta~~~~~~~~~~~~~~Vli~ga  154 (162)
T d1tt7a1          78 PRFAEGDEVIATSYE---LGVSRDGGLSEYASVPGDWLVPLPQNLSLKEAMVDQLLTIVDREVSLEETPGALKDILQNRI  154 (162)
T ss_dssp             TTCCTTCEEEEESTT---BTTTBCCSSBSSEEECGGGEEECCTTCCHHHHHHSCSTTSEEEEECSTTHHHHHHHTTTTCC
T ss_pred             cccccceeeEeeecc---ceeccccccceEEEecHHHEEECCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECC
Confidence            789999999886532   23446799999999999999999999999999999999999998765555556688999987


Q ss_pred             CCcH
Q 016265          242 SGGV  245 (392)
Q Consensus       242 ~G~v  245 (392)
                      +|++
T Consensus       155 ~G~v  158 (162)
T d1tt7a1         155 QGRV  158 (162)
T ss_dssp             SSEE
T ss_pred             cceE
Confidence            7764

>d1o89a1 b.35.1.2 (A:1-115,A:293-323) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=99.93  E-value=5.9e-26  Score=189.03  Aligned_cols=135  Identities=23%  Similarity=0.230  Sum_probs=116.1

Q ss_pred             eeEEEEcccCCcceEEEeccccCCCCCCCeEEEEEeEEecChHhHHhhcCCCCCCCCCCCCcCCCceeEEEEEeCCCCCC
Q 016265           84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKE  163 (392)
Q Consensus        84 mka~v~~~~~~~~~l~~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~~~p~v~G~e~~G~V~~vG~~v~~  163 (392)
                      |||++++++++...++++ +++.|+|++|||+|||.|+|||+.|++.+.|.++. ...+|.++|+|++|+|+++|.  ..
T Consensus         1 MkA~v~~~~~~~~~l~i~-~v~~p~~~~geVlVkV~a~gin~~D~~~~~G~~~~-~~~~p~v~G~e~~G~V~~~~~--~~   76 (146)
T d1o89a1           1 LQALLLEQQDGKTLASVQ-TLDESRLPEGDVTVDVHWSSLNYKDALAITGKGKI-IRNFPMIPGIDFAGTVRTSED--PR   76 (146)
T ss_dssp             CEEEEEECC---CEEEEE-ECCGGGSCSCSEEEEEEEEECCHHHHHHHHTCSSC-CCSSSBCCCSEEEEEEEEECS--TT
T ss_pred             CeEEEEEcCCCceEEEEE-EcCCCCCCCCEEEEEEeeccCccceeeEEEeeccc-ccccceeccccccccceeecc--CC
Confidence            899999999998888999 99999999999999999999999999999998753 356789999999999999876  47


Q ss_pred             CCCCCEEEecccccccCCCCCCCcceeEEEecCCceeeCCCCCCHHhHhccchhHHHHHHHH
Q 016265          164 FKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGL  225 (392)
Q Consensus       164 ~~vGdrV~~~~~~~~~~~~~~~G~~a~~~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~al  225 (392)
                      +++||+|++....   .+...+|+|+||+++++++++++|+++|+++||+++++..||+..+
T Consensus        77 ~~~g~~v~~~~~~---~g~~~~G~~Aey~~v~~~~vv~lP~~ls~~eAA~l~~a~~tA~~~~  135 (146)
T d1o89a1          77 FHAGQEVLLTGWG---VGENHWGGLAEQARVKGDWLVAMPQGQAAKEISLSEAPNFAEAIIN  135 (146)
T ss_dssp             CCTTCEEEEECTT---BTTTBCCSSBSEEEECGGGCEECCTTSCCEEECGGGHHHHHHHHHT
T ss_pred             ccceeeEEeeccc---ceecCCCcceeeeeeeeeeEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence            9999999875432   2344579999999999999999999999999999998888875444

>d1p0fa1 b.35.1.2 (A:1001-1163,A:1338-1372) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=99.93  E-value=1e-26  Score=203.85  Aligned_cols=153  Identities=21%  Similarity=0.238  Sum_probs=123.0

Q ss_pred             CCcceeEEEEcccCCcceEEEeccccCCCCCCCeEEEEEeEEecChHhHHhhcCCCCCCCCCCCCcCCCceeEEEEEeCC
Q 016265           80 VPSEMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGT  159 (392)
Q Consensus        80 ~p~~mka~v~~~~~~~~~l~~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~~~p~v~G~e~~G~V~~vG~  159 (392)
                      ...+|||+++.+++++  ++++ |+++|+|+++||||||.++|||++|+|.++|.++   ..+|.++|||++|+|+++|+
T Consensus         5 ~~~~~KAav~~~~g~~--l~i~-ev~~P~p~~~eVlVkv~a~gICgsDlh~~~G~~~---~~~P~i~GHE~~G~Vv~~G~   78 (198)
T d1p0fa1           5 KDITCKAAVAWEPHKP--LSLE-TITVAPPKAHEVRIKILASGICGSDSSVLKEIIP---SKFPVILGHEAVGVVESIGA   78 (198)
T ss_dssp             SCEEEEEEEBSSTTSC--CEEE-EEEECCCCTTEEEEEEEEEECCHHHHHHHTTSSC---CCSSBCCCCCEEEEEEEECT
T ss_pred             CceEEEEEEEccCCCC--CEEE-EEECCCCCCCEEEEEEEEEEEecccceeeeeccc---cccccccceeeeeeeeecCc
Confidence            4568999999998876  7888 8999999999999999999999999999999864   45899999999999999999


Q ss_pred             CCCCCCCCCEEEecccccc------------------c---------------------CCCCCCCcceeEEEecCCcee
Q 016265          160 QVKEFKEGDEVYGDINEKA------------------L---------------------EGPKQFGSLAEYTAVEERLLA  200 (392)
Q Consensus       160 ~v~~~~vGdrV~~~~~~~~------------------~---------------------~~~~~~G~~a~~~~v~~~~~~  200 (392)
                      +++++++||||+......+                  .                     ......|+|+||+.+++.+++
T Consensus        79 ~v~~~~~GdrV~~~~~~~Cg~c~~c~~g~~~~C~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~faey~~v~~~~~~  158 (198)
T d1p0fa1          79 GVTCVKPGDKVIPLFVPQCGSCRACKSSNSNFCEKNDMGAKTGLMADMTSRFTCRGKPIYNLMGTSTFTEYTVVADIAVA  158 (198)
T ss_dssp             TCCSCCTTCEEEECSSCCCSSSHHHHCTTCCCCTTCSTTTCCCSCTTSCCSEEETTEEEBCSTTTCCSBSEEEEETTSEE
T ss_pred             ccccCcCCCEEEEEeeccccccccccccccccchhhhccccccccCCCceeEeeCCeeccccCCCccceeeEEecHHHEE
Confidence            9999999999986432100                  0                     000124899999999999999


Q ss_pred             eCCCCCCHHhHhccchhHHHHHHHHHhcCCCCCCeEEEEcCCCcHHHH
Q 016265          201 PKPKNLDFVQAAGLPLAIETAYEGLERTGFSAGKSILVLNGSGGVGSL  248 (392)
Q Consensus       201 ~iP~~l~~~~aa~l~~~~~ta~~al~~~~~~~g~~VlI~Ga~G~vG~~  248 (392)
                      ++|++++++.++...+...+         +.+++.|||.| +|++|++
T Consensus       159 kip~~~~~~~~~~~~~~~~~---------v~~~~~vlv~G-~G~iGl~  196 (198)
T d1p0fa1         159 KIDPKINVNFLVSTKLTLDQ---------INKAFELLSSG-QGVRSIM  196 (198)
T ss_dssp             EECTTSCGGGGEEEEECGGG---------HHHHHHHTTTS-SCSEEEE
T ss_pred             ECCCCCCHHHHHHhhcchhh---------cCCCCEEEEEC-CCcceEE
Confidence            99999998876655444322         33445688887 8888753

>d1gu7a1 b.35.1.2 (A:23-160,A:350-386) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=99.92  E-value=9.3e-28  Score=206.78  Aligned_cols=160  Identities=19%  Similarity=0.207  Sum_probs=132.2

Q ss_pred             cceeEEEEcccCCc-ceE--EEeccccCCCCCCCeEEEEEeEEecChHhHHhhcCCCCCC--------CCCCCCcCCCce
Q 016265           82 SEMKAWLYGEYGGV-DVL--KFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKAT--------DSPLPTVPGYDV  150 (392)
Q Consensus        82 ~~mka~v~~~~~~~-~~l--~~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~--------~~~~p~v~G~e~  150 (392)
                      .+|||++++++|++ +.+  +.. +++.|+|++|||||||.+++||++|++.++|.++..        ....|.++|||+
T Consensus         2 ~t~kA~v~~~~G~p~~~l~l~~~-~~p~p~~~~~eVlVkv~a~~i~~~D~~~~~G~~~~~~~~~~~~~~~~~~~v~G~e~   80 (175)
T d1gu7a1           2 ITAQAVLYTQHGEPKDVLFTQSF-EIDDDNLAPNEVIVKTLGSPVNPSDINQIQGVYPSKPAKTTGFGTTEPAAPCGNEG   80 (175)
T ss_dssp             EEEEEEEESSCSCHHHHCEEEEE-EECTTSCCTTEEEEEEEEEEECHHHHHHHHTCSSCCCCCBSTTCCSSCBEECCSCC
T ss_pred             ceeEEEEEccCCCcccccEEEEE-ECCCCCCCcCEEEEEEEEeccCcceeEEEecCcccccccccccCCCCCCccccccc
Confidence            36899999999986 334  444 678888999999999999999999999999876432        235678899999


Q ss_pred             eEEEEEeCCCCCCCCCCCEEEecccccccCCCCCCCcceeEEEecCCceeeCCCCCCHHhHhccchhHHHHHHHHH--hc
Q 016265          151 AGVVVKVGTQVKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLE--RT  228 (392)
Q Consensus       151 ~G~V~~vG~~v~~~~vGdrV~~~~~~~~~~~~~~~G~~a~~~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~al~--~~  228 (392)
                      +|+|+++|.++..++.||+|.....        ..|+|+||+++++++++++|++++.+.+  +++..+|||+++.  ..
T Consensus        81 ~g~V~~~~~~~~~~~~g~~v~~~~~--------~~g~~aey~~v~~~~~~~iP~~~~~~~a--~~~~~~ta~~~l~~~~~  150 (175)
T d1gu7a1          81 LFEVIKVGSNVSSLEAGDWVIPSHV--------NFGTWRTHALGNDDDFIKLPNPAQSKAN--GKPNGLTDAKSIETLYD  150 (175)
T ss_dssp             EEEEEEECTTCCSCCTTCEEEESSS--------CCCCSBSEEEEEGGGEEEECCHHHHHHT--TCSCCCCCCCCEEEECC
T ss_pred             ccccccccccccccccccceecccc--------ccccccceeeehhhhccCCCccchhhhh--ccchHHHHHHHHHHHhc
Confidence            9999999999999999999987543        4689999999999999999998754444  4456668898874  36


Q ss_pred             CCCCCCeEEEEc-CCCcHHHHHHHH
Q 016265          229 GFSAGKSILVLN-GSGGVGSLVIQL  252 (392)
Q Consensus       229 ~~~~g~~VlI~G-a~G~vG~~aiql  252 (392)
                      ++++||+|||+| |+|++|++++|+
T Consensus       151 ~~~~g~~vli~gaa~~gvG~~~iQ~  175 (175)
T d1gu7a1         151 GTKPLHELYQDGVANSKDGKQLITY  175 (175)
T ss_dssp             SSSCHHHHHHHHHHTGGGSCEEEEC
T ss_pred             CCCCCCEEEEECccchhhhheEEeC
Confidence            799999999998 458899988763

>d1uufa1 b.35.1.2 (A:3-144,A:313-349) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=99.92  E-value=7e-25  Score=188.77  Aligned_cols=140  Identities=22%  Similarity=0.195  Sum_probs=112.8

Q ss_pred             eeEEEEcccCCcceEEEeccccCCCCCCCeEEEEEeEEecChHhHHhhcCCCCCCCCCCCCcCCCceeEEEEEeCCCCCC
Q 016265           84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKE  163 (392)
Q Consensus        84 mka~v~~~~~~~~~l~~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~~~p~v~G~e~~G~V~~vG~~v~~  163 (392)
                      |||++...++++  |+++ |++.|+|++||||||+.++|||++|++.+.|.++.  ..+|+++|||++|+|+++|++|++
T Consensus         1 m~a~~~~~~~~p--l~i~-ev~~P~pg~geVlVkv~a~gic~sDl~~~~g~~~~--~~~P~i~GhE~~G~V~~vG~~V~~   75 (179)
T d1uufa1           1 IKAVGAYSAKQP--LEPM-DITRREPGPNDVKIEIAYCGVCHSDLHQVRSEWAG--TVYPCVPGHEIVGRVVAVGDQVEK   75 (179)
T ss_dssp             CEEEEBSSTTSC--CEEE-ECCCCCCCTTEEEEEEEEEECCHHHHHHHHCTTSC--CCSSBCCCCCEEEEEEEECTTCCS
T ss_pred             CeEEEEccCCCC--CEEE-EecCCCCCCCEEEEEEEEECCCCCcceeeeeeecc--ccccccccccccccchhhcccccc
Confidence            799999888877  8888 99999999999999999999999999999997643  467999999999999999999999


Q ss_pred             CCCCCEEEecccc---------------------------cccCCCCCCCcceeEEEecCCceeeCCCCCCHHhHhccch
Q 016265          164 FKEGDEVYGDINE---------------------------KALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPL  216 (392)
Q Consensus       164 ~~vGdrV~~~~~~---------------------------~~~~~~~~~G~~a~~~~v~~~~~~~iP~~l~~~~aa~l~~  216 (392)
                      +++||||......                           ....+...+|+|+||+++++++++++|+.....   .+..
T Consensus        76 ~~vGdrV~v~~~~~~cg~C~~C~~g~~~~C~~~~~~~~~~~~~~~~~~~GgfaEy~~v~~~~~~~ip~~~~~~---~~a~  152 (179)
T d1uufa1          76 YAPGDLVGVGCIVDSCKHCEECEDGLENYCDHMTGTYNSPTPDEPGHTLGGYSQQIVVHERYVLRIRVADIEM---IRAD  152 (179)
T ss_dssp             CCTTCEEEECSEEECCSSSHHHHTTCGGGCTTCEETTTSBCSSTTSBCCCSSBSEEEEEGGGCEECCCCCEEE---ECGG
T ss_pred             CCCCCEEEEcccccccCccccccCcccccCCCccccccccCCCCCcccccccceEEEechHHEEECCCCCcCh---hHhc
Confidence            9999999643210                           000112346999999999999999999664332   2233


Q ss_pred             hHHHHHHHHHhcCCC
Q 016265          217 AIETAYEGLERTGFS  231 (392)
Q Consensus       217 ~~~ta~~al~~~~~~  231 (392)
                      ++.++++++.++.++
T Consensus       153 ~l~~a~~a~~~a~v~  167 (179)
T d1uufa1         153 QINEAYERMLRGDVK  167 (179)
T ss_dssp             GHHHHHHHHHTTCSS
T ss_pred             hhHHHHHHHHHhCcc
Confidence            556789998877664

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.89  E-value=1.5e-23  Score=181.40  Aligned_cols=149  Identities=26%  Similarity=0.379  Sum_probs=124.0

Q ss_pred             HhHhccchhHHHHHHHHH-hcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCC
Q 016265          209 VQAAGLPLAIETAYEGLE-RTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTK  287 (392)
Q Consensus       209 ~~aa~l~~~~~ta~~al~-~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~  287 (392)
                      +|||+++++++|||++|. .+++++||+|||+||+|++|++++|+|+.. |+++++++++++++++++++|+++++++++
T Consensus         1 eeAA~l~~~~~TA~~al~~~~~~~~g~~VlI~ga~g~vG~~~iqla~~~-g~~vi~~~~~~~~~~~l~~~Ga~~vi~~~~   79 (183)
T d1pqwa_           1 NEAATFGVAYLTAWHSLCEVGRLSPGERVLIHSATGGVGMAAVSIAKMI-GARIYTTAGSDAKREMLSRLGVEYVGDSRS   79 (183)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTSCCCTTCEEEETTTTSHHHHHHHHHHHHH-TCEEEEEESSHHHHHHHHTTCCSEEEETTC
T ss_pred             CchhhhhHHHHHHHHHHHHHhCCCCCCEEEEECCCCCcccccchhhccc-cccceeeecccccccccccccccccccCCc
Confidence            478999999999999984 568999999999999999999999999995 999999999999999999999999999988


Q ss_pred             CccccC------CCCccEEEecCc--cHHHHHHhcccCCeEEEEcCCCCCC-----------ceEEEEe-----------
Q 016265          288 DNFEDL------PEKFDVVYDAIG--QCDRAVKAIKEGGTVVALTGAVTPP-----------GFRFVVT-----------  337 (392)
Q Consensus       288 ~~~~~~------~~~~D~vid~~G--~~~~~~~~l~~~G~iv~~g~~~~~~-----------~~~~~~~-----------  337 (392)
                      +++.+.      ++++|++|||+|  .++.++++++++|+++.+|......           ...+...           
T Consensus        80 ~~~~~~v~~~t~~~g~d~v~d~~g~~~~~~~~~~l~~~G~~v~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (183)
T d1pqwa_          80 VDFADEILELTDGYGVDVVLNSLAGEAIQRGVQILAPGGRFIELGKKDVYADASLGLAALAKSASFSVVDLDLNLKLQPA  159 (183)
T ss_dssp             STHHHHHHHHTTTCCEEEEEECCCTHHHHHHHHTEEEEEEEEECSCGGGTTTCEEEGGGGTTTCEEEECCHHHHHHHCHH
T ss_pred             cCHHHHHHHHhCCCCEEEEEecccchHHHHHHHHhcCCCEEEEEccCCCCCCcccchHHHhCCcEEEEEEccceeccCHH
Confidence            876442      468999999998  4789999999999999997543111           1112111           


Q ss_pred             ecHHHHHHHHHHHHCCCcccc
Q 016265          338 SNGEVLKKLNPYLESGKVKPI  358 (392)
Q Consensus       338 ~~~~~~~~~~~~l~~g~l~~~  358 (392)
                      ...+.++++.+++++|++++.
T Consensus       160 ~~~~~~~~v~~~i~~G~i~p~  180 (183)
T d1pqwa_         160 RYRQLLQHILQHVADGKLEVL  180 (183)
T ss_dssp             HHHHHHHHHHHHHHTTSSCCC
T ss_pred             HHHHHHHHHHHHHHCCCCcee
Confidence            113557888899999999875

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=1.7e-23  Score=179.62  Aligned_cols=120  Identities=25%  Similarity=0.416  Sum_probs=109.2

Q ss_pred             CCHHhHhccchhHHHHHHHHH-hcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEe
Q 016265          206 LDFVQAAGLPLAIETAYEGLE-RTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAID  284 (392)
Q Consensus       206 l~~~~aa~l~~~~~ta~~al~-~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~  284 (392)
                      ||+++||+++++++|||++|. .+++++|++|||+||+|++|++++|+||.+ |+++++++++++|+++++++|+++++|
T Consensus         1 ls~~~AA~l~~~~~TA~~al~~~~~~~~g~~VlV~Ga~G~vG~~aiq~a~~~-G~~vi~~~~~~~~~~~~~~~Ga~~vi~   79 (174)
T d1yb5a2           1 LDFKQGAAIGIPYFTAYRALIHSACVKAGESVLVHGASGGVGLAACQIARAY-GLKILGTAGTEEGQKIVLQNGAHEVFN   79 (174)
T ss_dssp             SCHHHHTTTHHHHHHHHHHHHTTSCCCTTCEEEEETCSSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHTTCSEEEE
T ss_pred             CCHHHHHHhHHHHHHHHHHHHHHhCCCCCCEEEEEecccccccccccccccc-CcccccccccccccccccccCcccccc
Confidence            689999999999999999985 678999999999998899999999999995 999999999999999999999999999


Q ss_pred             CCCCccccC------CCCccEEEecCc--cHHHHHHhcccCCeEEEEcCC
Q 016265          285 YTKDNFEDL------PEKFDVVYDAIG--QCDRAVKAIKEGGTVVALTGA  326 (392)
Q Consensus       285 ~~~~~~~~~------~~~~D~vid~~G--~~~~~~~~l~~~G~iv~~g~~  326 (392)
                      +++.++.+.      .+++|++|||+|  .++.++++++++|+++.+|..
T Consensus        80 ~~~~~~~~~i~~~t~~~g~d~v~d~~g~~~~~~~~~~l~~~G~iv~~G~~  129 (174)
T d1yb5a2          80 HREVNYIDKIKKYVGEKGIDIIIEMLANVNLSKDLSLLSHGGRVIVVGSR  129 (174)
T ss_dssp             TTSTTHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHEEEEEEEEECCCC
T ss_pred             cccccHHHHhhhhhccCCceEEeecccHHHHHHHHhccCCCCEEEEEecC
Confidence            988776442      568999999998  468999999999999999754

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.89  E-value=3.1e-23  Score=177.03  Aligned_cols=148  Identities=24%  Similarity=0.310  Sum_probs=121.8

Q ss_pred             CHHhHhccchhHHHHHHHHHhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCC
Q 016265          207 DFVQAAGLPLAIETAYEGLERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYT  286 (392)
Q Consensus       207 ~~~~aa~l~~~~~ta~~al~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~  286 (392)
                      +++.||.+.|++.|+|++++++++++||+|+|+| +|++|++++|+||.+ |+++++++.+++|+++++++|+++++++.
T Consensus         2 p~e~AApl~cag~Ta~~al~~~~~~~g~~vlI~G-aG~vG~~a~q~ak~~-G~~vi~~~~~~~k~~~a~~lGa~~~i~~~   79 (168)
T d1piwa2           2 PSHLAAPLLCGGLTVYSPLVRNGCGPGKKVGIVG-LGGIGSMGTLISKAM-GAETYVISRSSRKREDAMKMGADHYIATL   79 (168)
T ss_dssp             CHHHHGGGGTHHHHHHHHHHHTTCSTTCEEEEEC-CSHHHHHHHHHHHHH-TCEEEEEESSSTTHHHHHHHTCSEEEEGG
T ss_pred             CHHHHHHHHHHHHHHHHHHHHhCcCCCCEEEEEC-CCCcchhHHHHhhhc-cccccccccchhHHHHhhccCCcEEeecc
Confidence            4677889999999999999999999999999998 799999999999995 99999999999999999999999999975


Q ss_pred             CC-cc-ccCCCCccEEEecCcc-----HHHHHHhcccCCeEEEEcCCCCCCceEEE------------EeecHHHHHHHH
Q 016265          287 KD-NF-EDLPEKFDVVYDAIGQ-----CDRAVKAIKEGGTVVALTGAVTPPGFRFV------------VTSNGEVLKKLN  347 (392)
Q Consensus       287 ~~-~~-~~~~~~~D~vid~~G~-----~~~~~~~l~~~G~iv~~g~~~~~~~~~~~------------~~~~~~~~~~~~  347 (392)
                      ++ ++ ....+++|+++||+|.     ++.++++++++|+++.+|....+..+++.            .....+++++++
T Consensus        80 ~~~~~~~~~~~~~d~vi~~~~~~~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~k~~~i~Gs~~g~~~~~~e~l  159 (168)
T d1piwa2          80 EEGDWGEKYFDTFDLIVVCASSLTDIDFNIMPKAMKVGGRIVSISIPEQHEMLSLKPYGLKAVSISYSALGSIKELNQLL  159 (168)
T ss_dssp             GTSCHHHHSCSCEEEEEECCSCSTTCCTTTGGGGEEEEEEEEECCCCCSSCCEEECGGGCBSCEEEECCCCCHHHHHHHH
T ss_pred             chHHHHHhhhcccceEEEEecCCccchHHHHHHHhhccceEEEeccccccccccHHHHHhCCcEEEEEeeCCHHHHHHHH
Confidence            43 33 3456789999999772     57899999999999999876644333321            122456777777


Q ss_pred             HHHHCCCcc
Q 016265          348 PYLESGKVK  356 (392)
Q Consensus       348 ~~l~~g~l~  356 (392)
                      +++++|+++
T Consensus       160 ~li~~gkIk  168 (168)
T d1piwa2         160 KLVSEKDIK  168 (168)
T ss_dssp             HHHHHTTCC
T ss_pred             HHHHhCCCC
Confidence            887777764

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.89  E-value=4.4e-23  Score=176.65  Aligned_cols=121  Identities=21%  Similarity=0.266  Sum_probs=105.4

Q ss_pred             CCHHhHhccchhHHHHHHHHH----hcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcE
Q 016265          206 LDFVQAAGLPLAIETAYEGLE----RTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADL  281 (392)
Q Consensus       206 l~~~~aa~l~~~~~ta~~al~----~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~  281 (392)
                      ||+++||+++++++|||++++    ..+.++|++|||+||+|++|.+++|+||. .|++|++++++++|.++++++|+++
T Consensus         1 lS~~eAAal~~aglTA~~a~~~L~~~g~~~~g~~VLI~gaaGGVG~~aiQlak~-~Ga~Viat~~s~~k~~~~~~lGa~~   79 (176)
T d1xa0a2           1 LTLKEAMAIGTAGFTAALSIHRLEEHGLTPERGPVLVTGATGGVGSLAVSMLAK-RGYTVEASTGKAAEHDYLRVLGAKE   79 (176)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCCEEESSTTSHHHHHHHHHHHH-TTCCEEEEESCTTCHHHHHHTTCSE
T ss_pred             CCHHHHHHhhhHHHHHHHHHHHHHHhCCCCCCCEEEEEeccchHHHHHHHHHHH-cCCceEEecCchHHHHHHHhcccce
Confidence            689999999999999997764    46788999999999999999999999999 5999999999999999999999999


Q ss_pred             EEeCCCCcccc----CCCCccEEEecCc--cHHHHHHhcccCCeEEEEcCCC
Q 016265          282 AIDYTKDNFED----LPEKFDVVYDAIG--QCDRAVKAIKEGGTVVALTGAV  327 (392)
Q Consensus       282 vi~~~~~~~~~----~~~~~D~vid~~G--~~~~~~~~l~~~G~iv~~g~~~  327 (392)
                      ++|+++...+.    ..+++|+|||++|  .++.++++|+++|+++.+|...
T Consensus        80 vi~~~~~~~~~~~~~~~~gvD~vid~vgg~~~~~~l~~l~~~Griv~~G~~~  131 (176)
T d1xa0a2          80 VLAREDVMAERIRPLDKQRWAAAVDPVGGRTLATVLSRMRYGGAVAVSGLTG  131 (176)
T ss_dssp             EEECC---------CCSCCEEEEEECSTTTTHHHHHHTEEEEEEEEECSCCS
T ss_pred             eeecchhHHHHHHHhhccCcCEEEEcCCchhHHHHHHHhCCCceEEEeeccc
Confidence            99987643222    2568999999998  5799999999999999998754

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=99.89  E-value=5.1e-23  Score=176.52  Aligned_cols=120  Identities=28%  Similarity=0.327  Sum_probs=107.7

Q ss_pred             CCHHhHhccchhHHHHHHHHHhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCC-eEEEEeCCcccHHHHHhcCCcEEEe
Q 016265          206 LDFVQAAGLPLAIETAYEGLERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGA-SRVAATSSTRNLEFLKSLGADLAID  284 (392)
Q Consensus       206 l~~~~aa~l~~~~~ta~~al~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~-~vv~~~~~~~~~~~~~~~G~~~vi~  284 (392)
                      +++|+|+.+++++.|+|++++++++++||+|+|+| +|++|++++|+||. .|+ ++++++.+++|+++++++|+++++|
T Consensus         1 ip~e~A~~l~~~~~ta~~a~~~a~~~~g~~VlI~G-aG~vGl~~~q~ak~-~Ga~~Vi~~d~~~~r~~~a~~lGa~~~i~   78 (174)
T d1jqba2           1 MPLENAVMITDMMTTGFHGAELADIEMGSSVVVIG-IGAVGLMGIAGAKL-RGAGRIIGVGSRPICVEAAKFYGATDILN   78 (174)
T ss_dssp             SCHHHHHTTTTHHHHHHHHHHHTTCCTTCCEEEEC-CSHHHHHHHHHHHT-TTCSCEEEECCCHHHHHHHHHHTCSEEEC
T ss_pred             CCHHHHHHhhhHHHHHHHHHHHhCCCCCCEEEEEc-CCcchhhhhhhhhc-ccccccccccchhhhHHHHHhhCcccccc
Confidence            57899999999999999999999999999999997 79999999999998 598 6778888999999999999999999


Q ss_pred             CCCCccccC------CCCccEEEecCcc---HHHHHHhcccCCeEEEEcCCC
Q 016265          285 YTKDNFEDL------PEKFDVVYDAIGQ---CDRAVKAIKEGGTVVALTGAV  327 (392)
Q Consensus       285 ~~~~~~~~~------~~~~D~vid~~G~---~~~~~~~l~~~G~iv~~g~~~  327 (392)
                      ++++++.+.      ++|+|+||||+|+   +++++++++++|+++.+|...
T Consensus        79 ~~~~~~~~~v~~~t~g~G~D~vid~~g~~~~~~~a~~~~~~~G~iv~~G~~~  130 (174)
T d1jqba2          79 YKNGHIEDQVMKLTNGKGVDRVIMAGGGSETLSQAVKMVKPGGIISNINYHG  130 (174)
T ss_dssp             GGGSCHHHHHHHHTTTSCEEEEEECSSCTTHHHHHHHHEEEEEEEEECCCCC
T ss_pred             ccchhHHHHHHHHhhccCcceEEEccCCHHHHHHHHHHHhcCCEEEEEeecC
Confidence            987766442      4579999999983   689999999999999998655

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=99.88  E-value=1.3e-22  Score=173.04  Aligned_cols=121  Identities=27%  Similarity=0.338  Sum_probs=108.0

Q ss_pred             CCCHHhHhccchhHHHHHHHHHhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEe
Q 016265          205 NLDFVQAAGLPLAIETAYEGLERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAID  284 (392)
Q Consensus       205 ~l~~~~aa~l~~~~~ta~~al~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~  284 (392)
                      +.+++.+|.+.|+..|+|++++++++++||+|+|+| +|++|++++|+||. .|+++|+++.+++|+++++++|+|+++|
T Consensus         3 ~~~~a~~Apl~Cag~Tay~al~~~~~~~G~~VlI~G-aG~vG~~a~qlak~-~Ga~~i~~~~~~~~~~~a~~lGad~~i~   80 (168)
T d1uufa2           3 QEQLAAVAPLLCAGITTYSPLRHWQAGPGKKVGVVG-IGGLGHMGIKLAHA-MGAHVVAFTTSEAKREAAKALGADEVVN   80 (168)
T ss_dssp             GGGHHHHGGGGTHHHHHHHHHHHTTCCTTCEEEEEC-CSHHHHHHHHHHHH-TTCEEEEEESSGGGHHHHHHHTCSEEEE
T ss_pred             cccHHHHHHHHhHHHHHHHHHHHhCCCCCCEEEEec-cchHHHHHHHHhhc-ccccchhhccchhHHHHHhccCCcEEEE
Confidence            356788888999999999999999999999999998 79999999999999 5999999999999999999999999999


Q ss_pred             CCCCccc-cCCCCccEEEecCc---cHHHHHHhcccCCeEEEEcCCC
Q 016265          285 YTKDNFE-DLPEKFDVVYDAIG---QCDRAVKAIKEGGTVVALTGAV  327 (392)
Q Consensus       285 ~~~~~~~-~~~~~~D~vid~~G---~~~~~~~~l~~~G~iv~~g~~~  327 (392)
                      +.+.+.. ...+++|++|||+|   .++.++++++++|+++.+|...
T Consensus        81 ~~~~~~~~~~~~~~D~vid~~g~~~~~~~~~~~l~~~G~iv~~G~~~  127 (168)
T d1uufa2          81 SRNADEMAAHLKSFDFILNTVAAPHNLDDFTTLLKRDGTMTLVGAPA  127 (168)
T ss_dssp             TTCHHHHHTTTTCEEEEEECCSSCCCHHHHHTTEEEEEEEEECCCC-
T ss_pred             CchhhHHHHhcCCCceeeeeeecchhHHHHHHHHhcCCEEEEeccCC
Confidence            9876643 34578999999998   4799999999999999998643

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=99.88  E-value=3.8e-23  Score=176.92  Aligned_cols=121  Identities=27%  Similarity=0.423  Sum_probs=106.8

Q ss_pred             CCHHhHhccchhHHHHHHHHHhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeC
Q 016265          206 LDFVQAAGLPLAIETAYEGLERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDY  285 (392)
Q Consensus       206 l~~~~aa~l~~~~~ta~~al~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~  285 (392)
                      +++++||++++++.|||++++++++++||+|||+||+|++|++++|+||+ .|++|++++++++|++.++++|+++++|+
T Consensus         1 ls~eeAA~l~~~~~TA~~al~~~~~~~g~~VlI~ga~G~vG~~aiqlak~-~G~~vi~~~~~~~~~~~~~~lGa~~~i~~   79 (171)
T d1iz0a2           1 LSPEEAAAFPVSFLTAYLALKRAQARPGEKVLVQAAAGALGTAAVQVARA-MGLRVLAAASRPEKLALPLALGAEEAATY   79 (171)
T ss_dssp             CCHHHHHTSHHHHHHHHHHHHHTTCCTTCEEEESSTTBHHHHHHHHHHHH-TTCEEEEEESSGGGSHHHHHTTCSEEEEG
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeccccchhhhhhhhcc-cccccccccccccccccccccccceeeeh
Confidence            58999999999999999999999999999999999999999999999999 59999999999999999999999999998


Q ss_pred             CCCcc-ccCCCCccEEEecCc-cHHHHHHhcccCCeEEEEcCCC
Q 016265          286 TKDNF-EDLPEKFDVVYDAIG-QCDRAVKAIKEGGTVVALTGAV  327 (392)
Q Consensus       286 ~~~~~-~~~~~~~D~vid~~G-~~~~~~~~l~~~G~iv~~g~~~  327 (392)
                      .+... ....+|+|+||||+| .++.++++++++|+++.+|...
T Consensus        80 ~~~~~~~~~~~g~D~v~d~~G~~~~~~~~~l~~~G~~v~~G~~~  123 (171)
T d1iz0a2          80 AEVPERAKAWGGLDLVLEVRGKEVEESLGLLAHGGRLVYIGAAE  123 (171)
T ss_dssp             GGHHHHHHHTTSEEEEEECSCTTHHHHHTTEEEEEEEEEC----
T ss_pred             hhhhhhhhccccccccccccchhHHHHHHHHhcCCcEEEEeCCC
Confidence            65321 223678999999998 6799999999999999997643

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.88  E-value=1.3e-22  Score=173.29  Aligned_cols=123  Identities=24%  Similarity=0.317  Sum_probs=109.3

Q ss_pred             CCHHhHhccchhHHHHHHHHHhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCC-eEEEEeCCcccHHHHHhcCCcEEEe
Q 016265          206 LDFVQAAGLPLAIETAYEGLERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGA-SRVAATSSTRNLEFLKSLGADLAID  284 (392)
Q Consensus       206 l~~~~aa~l~~~~~ta~~al~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~-~vv~~~~~~~~~~~~~~~G~~~vi~  284 (392)
                      +|+.+||+++|++.|||+++++.++++||+|+|+|++|++|++++|+++.. |+ ++++++.+++|+++++++|++++++
T Consensus         1 l~~~eAA~l~c~~~Ta~~al~~~~~~~g~~vlV~G~~G~vG~~~~~~~~~~-g~~~V~~~~~~~~~~~~~~~~Ga~~~i~   79 (170)
T d1jvba2           1 LNAVEAAPLTCSGITTYRAVRKASLDPTKTLLVVGAGGGLGTMAVQIAKAV-SGATIIGVDVREEAVEAAKRAGADYVIN   79 (170)
T ss_dssp             SCHHHHGGGGTHHHHHHHHHHHTTCCTTCEEEEETTTSHHHHHHHHHHHHH-TCCEEEEEESSHHHHHHHHHHTCSEEEE
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeccccceeeeeeccccc-ccccccccccchhhHHHHHHcCCceeec
Confidence            578999999999999999999999999999999998899999999999986 74 7777888999999999999999999


Q ss_pred             CCCCccccC------CCCccEEEecCcc---HHHHHHhcccCCeEEEEcCCCCC
Q 016265          285 YTKDNFEDL------PEKFDVVYDAIGQ---CDRAVKAIKEGGTVVALTGAVTP  329 (392)
Q Consensus       285 ~~~~~~~~~------~~~~D~vid~~G~---~~~~~~~l~~~G~iv~~g~~~~~  329 (392)
                      +++.++.+.      ++++|++|||+|+   ++.++++++++|+++.+|....+
T Consensus        80 ~~~~~~~~~~~~~~~~~~~d~vid~~g~~~~~~~a~~~l~~~G~iv~~G~~~~~  133 (170)
T d1jvba2          80 ASMQDPLAEIRRITESKGVDAVIDLNNSEKTLSVYPKALAKQGKYVMVGLFGAD  133 (170)
T ss_dssp             TTTSCHHHHHHHHTTTSCEEEEEESCCCHHHHTTGGGGEEEEEEEEECCSSCCC
T ss_pred             cCCcCHHHHHHHHhhcccchhhhcccccchHHHhhhhhcccCCEEEEeccccCc
Confidence            988765332      4579999999984   57899999999999999876543

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.88  E-value=3.3e-22  Score=170.15  Aligned_cols=120  Identities=23%  Similarity=0.328  Sum_probs=106.5

Q ss_pred             CCHHhHhccchhHHHHHHHHHhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeC
Q 016265          206 LDFVQAAGLPLAIETAYEGLERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDY  285 (392)
Q Consensus       206 l~~~~aa~l~~~~~ta~~al~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~  285 (392)
                      +|++++|.++|++.|||++++++++++||+|+|+| +|++|++++|+||.+ |++|++++++++|+++++++|+++++|+
T Consensus         1 v~f~~aA~l~ca~~Ta~~al~~~~~~~g~~VlV~G-aG~vG~~~~~~ak~~-G~~Vi~~~~~~~~~~~a~~~Ga~~~i~~   78 (166)
T d1llua2           1 VEFAEIAPILCAGVTVYKGLKQTNARPGQWVAISG-IGGLGHVAVQYARAM-GLHVAAIDIDDAKLELARKLGASLTVNA   78 (166)
T ss_dssp             SCHHHHGGGGTHHHHHHHHHHHHTCCTTCEEEEEC-CSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHTTCSEEEET
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHhCCCCCCEEEEee-ccccHHHHHHHHHHc-CCccceecchhhHHHhhhccCccccccc
Confidence            58999999999999999999999999999999998 799999999999994 9999999999999999999999999999


Q ss_pred             CCCcccc----CCCCccEEEecCc---cHHHHHHhcccCCeEEEEcCCC
Q 016265          286 TKDNFED----LPEKFDVVYDAIG---QCDRAVKAIKEGGTVVALTGAV  327 (392)
Q Consensus       286 ~~~~~~~----~~~~~D~vid~~G---~~~~~~~~l~~~G~iv~~g~~~  327 (392)
                      .++++.+    ...+.|.++++++   .++.++++++++|+++.+|...
T Consensus        79 ~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~l~~~G~iv~~G~~~  127 (166)
T d1llua2          79 RQEDPVEAIQRDIGGAHGVLVTAVSNSAFGQAIGMARRGGTIALVGLPP  127 (166)
T ss_dssp             TTSCHHHHHHHHHSSEEEEEECCSCHHHHHHHHTTEEEEEEEEECCCCS
T ss_pred             cchhHHHHHHHhhcCCcccccccccchHHHHHHHHhcCCcEEEEEEecC
Confidence            8876543    2346777777766   4689999999999999998654

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=99.87  E-value=1.9e-22  Score=173.82  Aligned_cols=121  Identities=26%  Similarity=0.395  Sum_probs=110.4

Q ss_pred             CCHHhHhccchhHHHHHHHHH-hcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEe
Q 016265          206 LDFVQAAGLPLAIETAYEGLE-RTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAID  284 (392)
Q Consensus       206 l~~~~aa~l~~~~~ta~~al~-~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~  284 (392)
                      +|+++||+++++++|||++|. .+++++||+|||+||+|++|++++|+||. .|++|++++++++|+++++++|+++++|
T Consensus         1 isfe~AA~~~~~~~TA~~al~~~~~l~~g~~Vlv~ga~g~vG~~~iqlak~-~Ga~Vi~~~~s~~k~~~~~~lGa~~vi~   79 (179)
T d1qora2           1 ISFEQAAASFLKGLTVYYLLRKTYEIKPDEQFLFHAAAGGVGLIACQWAKA-LGAKLIGTVGTAQKAQSALKAGAWQVIN   79 (179)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHTTSCCCTTCEEEESSTTBHHHHHHHHHHHH-HTCEEEEEESSHHHHHHHHHHTCSEEEE
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHhCCCCCCEEEEEccccccchHHHHHHHH-hCCeEeecccchHHHHHHHhcCCeEEEE
Confidence            589999999999999999996 46899999999999999999999999998 5999999999999999999999999999


Q ss_pred             CCCCccccC------CCCccEEEecCc--cHHHHHHhcccCCeEEEEcCCC
Q 016265          285 YTKDNFEDL------PEKFDVVYDAIG--QCDRAVKAIKEGGTVVALTGAV  327 (392)
Q Consensus       285 ~~~~~~~~~------~~~~D~vid~~G--~~~~~~~~l~~~G~iv~~g~~~  327 (392)
                      ++++++.+.      ++++|+++|++|  .++.++++++++|+++.++...
T Consensus        80 ~~~~d~~~~v~~~t~g~g~d~v~d~~g~~~~~~~~~~l~~~G~~v~~g~~~  130 (179)
T d1qora2          80 YREEDLVERLKEITGGKKVRVVYDSVGRDTWERSLDCLQRRGLMVSFGNSS  130 (179)
T ss_dssp             TTTSCHHHHHHHHTTTCCEEEEEECSCGGGHHHHHHTEEEEEEEEECCCTT
T ss_pred             CCCCCHHHHHHHHhCCCCeEEEEeCccHHHHHHHHHHHhcCCeeeeccccc
Confidence            998887542      568999999998  4789999999999999987654

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.87  E-value=8.8e-22  Score=167.65  Aligned_cols=121  Identities=28%  Similarity=0.382  Sum_probs=106.1

Q ss_pred             CCHHhHhccchhHHHHHHHHHhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeC
Q 016265          206 LDFVQAAGLPLAIETAYEGLERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDY  285 (392)
Q Consensus       206 l~~~~aa~l~~~~~ta~~al~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~  285 (392)
                      ||+++||+++++++|||+++++.++++|++|+|+| +|++|++++|+|+. .|+++++++.+++|+++++++|++.++++
T Consensus         1 ls~eeAA~l~~~~~Ta~~al~~~~~~~g~~vlv~G-~G~iG~~a~~~a~~-~g~~v~~~~~~~~r~~~~k~~Ga~~~~~~   78 (168)
T d1rjwa2           1 LSFEEAAPIFCAGVTTYKALKVTGAKPGEWVAIYG-IGGLGHVAVQYAKA-MGLNVVAVDIGDEKLELAKELGADLVVNP   78 (168)
T ss_dssp             SCHHHHGGGGTHHHHHHHHHHHHTCCTTCEEEEEC-CSTTHHHHHHHHHH-TTCEEEEECSCHHHHHHHHHTTCSEEECT
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHhCCCCCCEEEEee-cccchhhhhHHHhc-CCCeEeccCCCHHHhhhhhhcCcceeccc
Confidence            68999999999999999999999999999999997 79999999999998 59999999999999999999999999999


Q ss_pred             CCCccccC----CCCccEEEecCc---cHHHHHHhcccCCeEEEEcCCCC
Q 016265          286 TKDNFEDL----PEKFDVVYDAIG---QCDRAVKAIKEGGTVVALTGAVT  328 (392)
Q Consensus       286 ~~~~~~~~----~~~~D~vid~~G---~~~~~~~~l~~~G~iv~~g~~~~  328 (392)
                      .++++.+.    ..+.|.++++++   .++.++++++++|+++.+|....
T Consensus        79 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~a~~~l~~~G~i~~~g~~~~  128 (168)
T d1rjwa2          79 LKEDAAKFMKEKVGGVHAAVVTAVSKPAFQSAYNSIRRGGACVLVGLPPE  128 (168)
T ss_dssp             TTSCHHHHHHHHHSSEEEEEESSCCHHHHHHHHHHEEEEEEEEECCCCSS
T ss_pred             ccchhhhhcccccCCCceEEeecCCHHHHHHHHHHhccCCceEecccccC
Confidence            88776442    345555556655   37999999999999999987553

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=1.2e-21  Score=167.38  Aligned_cols=123  Identities=25%  Similarity=0.386  Sum_probs=106.0

Q ss_pred             CCHHhHhccchhHHHHHHHHHhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCC-eEEEEeCCcccHHHHHhcCCcEEEe
Q 016265          206 LDFVQAAGLPLAIETAYEGLERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGA-SRVAATSSTRNLEFLKSLGADLAID  284 (392)
Q Consensus       206 l~~~~aa~l~~~~~ta~~al~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~-~vv~~~~~~~~~~~~~~~G~~~vi~  284 (392)
                      +|+++||.+ .++.+|||+++++++++||+|+|+| +|++|++++|+|+.+ |+ ++++++.+++|+++++++|++++++
T Consensus         1 vS~e~Aal~-epla~a~~a~~~~~~~~gd~VlI~G-~G~iG~~~~~~a~~~-G~~~Vi~~d~~~~rl~~a~~~Ga~~~~~   77 (171)
T d1pl8a2           1 VTFEEGALI-EPLSVGIHACRRGGVTLGHKVLVCG-AGPIGMVTLLVAKAM-GAAQVVVTDLSATRLSKAKEIGADLVLQ   77 (171)
T ss_dssp             SCHHHHHHH-HHHHHHHHHHHHHTCCTTCEEEEEC-CSHHHHHHHHHHHHT-TCSEEEEEESCHHHHHHHHHTTCSEEEE
T ss_pred             CCHHHHHHH-HHHHHHHHHHHHhCCCCCCEEEEEC-CCccHHHHHHHHHHc-CCceEEeccCCHHHHHHHHHhCCccccc
Confidence            578998865 4556799999999999999999998 799999999999995 88 6888889999999999999999999


Q ss_pred             CCCCcccc--------CCCCccEEEecCcc---HHHHHHhcccCCeEEEEcCCCCCCc
Q 016265          285 YTKDNFED--------LPEKFDVVYDAIGQ---CDRAVKAIKEGGTVVALTGAVTPPG  331 (392)
Q Consensus       285 ~~~~~~~~--------~~~~~D~vid~~G~---~~~~~~~l~~~G~iv~~g~~~~~~~  331 (392)
                      +.+++..+        .+.++|++|||+|.   ++.++++++++|+++.+|.+..+..
T Consensus        78 ~~~~~~~~~~~~~~~~~g~g~Dvvid~~G~~~~~~~a~~~~~~gG~iv~~G~~~~~~~  135 (171)
T d1pl8a2          78 ISKESPQEIARKVEGQLGCKPEVTIECTGAEASIQAGIYATRSGGTLVLVGLGSEMTT  135 (171)
T ss_dssp             CSSCCHHHHHHHHHHHHTSCCSEEEECSCCHHHHHHHHHHSCTTCEEEECSCCCSCCC
T ss_pred             ccccccccccccccccCCCCceEEEeccCCchhHHHHHHHhcCCCEEEEEecCCCCCc
Confidence            88776533        25689999999994   6899999999999999997664433

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=99.85  E-value=3.6e-21  Score=164.68  Aligned_cols=117  Identities=23%  Similarity=0.374  Sum_probs=101.2

Q ss_pred             HHhHhccchhHHHHHHHHHhc--CCCCCCeEEEEcCCCcHHHHHHHHHHHhcCC-eEEEEeCCcccHHHHHhcCCcEEEe
Q 016265          208 FVQAAGLPLAIETAYEGLERT--GFSAGKSILVLNGSGGVGSLVIQLAKQVFGA-SRVAATSSTRNLEFLKSLGADLAID  284 (392)
Q Consensus       208 ~~~aa~l~~~~~ta~~al~~~--~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~-~vv~~~~~~~~~~~~~~~G~~~vi~  284 (392)
                      +.++|+++++++|||+++.+.  .+++|++|+|+| +|++|++++|+|++. |+ .+++++.+++|+++++++|++++++
T Consensus         6 l~eaA~l~~~~~Ta~~al~~~~~~~~~g~~vli~G-aG~vG~~~~~~a~~~-g~~~vv~~~~~~~k~~~~~~~ga~~~i~   83 (172)
T d1h2ba2           6 LVEMAPLADAGITAYRAVKKAARTLYPGAYVAIVG-VGGLGHIAVQLLKVM-TPATVIALDVKEEKLKLAERLGADHVVD   83 (172)
T ss_dssp             HHHTGGGGTHHHHHHHHHHHHHTTCCTTCEEEEEC-CSHHHHHHHHHHHHH-CCCEEEEEESSHHHHHHHHHTTCSEEEE
T ss_pred             HHHHhHHHhHHHHHHHHHHHhhhccCCCCEEEEeC-CChHHHHHHHHHHhh-cCcccccccchhHHHHHHhhcccceeec
Confidence            578889999999999999764  589999999998 799999999999986 76 5556678899999999999999999


Q ss_pred             CCCCccccC-----CCCccEEEecCcc---HHHHHHhcccCCeEEEEcCC
Q 016265          285 YTKDNFEDL-----PEKFDVVYDAIGQ---CDRAVKAIKEGGTVVALTGA  326 (392)
Q Consensus       285 ~~~~~~~~~-----~~~~D~vid~~G~---~~~~~~~l~~~G~iv~~g~~  326 (392)
                      +.++.+++.     .+++|+||||+|.   ++.++++++++|+++.+|..
T Consensus        84 ~~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~a~~~l~~~G~iv~~G~~  133 (172)
T d1h2ba2          84 ARRDPVKQVMELTRGRGVNVAMDFVGSQATVDYTPYLLGRMGRLIIVGYG  133 (172)
T ss_dssp             TTSCHHHHHHHHTTTCCEEEEEESSCCHHHHHHGGGGEEEEEEEEECCCS
T ss_pred             CcccHHHHHHHhhCCCCceEEEEecCcchHHHHHHHHHhCCCEEEEEeCc
Confidence            987665432     4589999999983   68999999999999999854

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=99.85  E-value=4.5e-21  Score=164.12  Aligned_cols=160  Identities=18%  Similarity=0.162  Sum_probs=120.4

Q ss_pred             CHHhHhccchhHHHHHHHH-HhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCe-EEEEeCCcccHHHHHhcCCcEEEe
Q 016265          207 DFVQAAGLPLAIETAYEGL-ERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGAS-RVAATSSTRNLEFLKSLGADLAID  284 (392)
Q Consensus       207 ~~~~aa~l~~~~~ta~~al-~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~-vv~~~~~~~~~~~~~~~G~~~vi~  284 (392)
                      ++++||.++|++.|+|+++ +.+++++||+|+|+| +|++|++++|+||.+ |++ +++++.+++|+++++++|+++++|
T Consensus         2 ~Le~aa~l~Ca~~T~~~a~~~~a~v~~G~~VlV~G-~G~iGl~a~~~ak~~-Ga~~Vi~~d~~~~r~~~a~~~Ga~~~i~   79 (174)
T d1e3ia2           2 NLERVCLIGCGFSSGYGAAINTAKVTPGSTCAVFG-LGCVGLSAIIGCKIA-GASRIIAIDINGEKFPKAKALGATDCLN   79 (174)
T ss_dssp             CHHHHGGGGTHHHHHHHHHHTTSCCCTTCEEEEEC-CSHHHHHHHHHHHHT-TCSEEEEECSCGGGHHHHHHTTCSEEEC
T ss_pred             CHHHHHHhhhHHHHHHHHHHHhhCCCCCCEEEEEC-CChHHHHHHHHHHHh-CCceeeeeccchHHHHHHHHhCCCcccC
Confidence            5788999999999999998 569999999999997 899999999999995 885 556778999999999999999998


Q ss_pred             CCCCc-c-cc-----CCCCccEEEecCcc---HHHHHHhcccC-CeEEEEcCCCCCCceEEEEeecHHHHHHHHHHHHCC
Q 016265          285 YTKDN-F-ED-----LPEKFDVVYDAIGQ---CDRAVKAIKEG-GTVVALTGAVTPPGFRFVVTSNGEVLKKLNPYLESG  353 (392)
Q Consensus       285 ~~~~~-~-~~-----~~~~~D~vid~~G~---~~~~~~~l~~~-G~iv~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~g  353 (392)
                      +...+ . ..     ..+|+|++|||+|.   ++.++++++++ |+++.+|.+..+..++      .      ..++...
T Consensus        80 ~~~~~~~~~~~~~~~~~~G~d~vie~~G~~~~~~~a~~~~~~g~G~~v~vG~~~~~~~i~------~------~~~~~~k  147 (174)
T d1e3ia2          80 PRELDKPVQDVITELTAGGVDYSLDCAGTAQTLKAAVDCTVLGWGSCTVVGAKVDEMTIP------T------VDVILGR  147 (174)
T ss_dssp             GGGCSSCHHHHHHHHHTSCBSEEEESSCCHHHHHHHHHTBCTTTCEEEECCCSSSEEEEE------H------HHHHTTC
T ss_pred             CccchhhhhhhHhhhhcCCCcEEEEecccchHHHHHHHHhhcCCeEEEecCCCCCccccc------h------HHHhccC
Confidence            75432 2 11     25689999999994   68999999996 9999998755332221      1      1222222


Q ss_pred             CcccccCCCcccchhhHHHHHHHHHhCC
Q 016265          354 KVKPIIDPKGPFPFSQVVEAFSYIETNK  381 (392)
Q Consensus       354 ~l~~~~~~t~~~~l~~~~~A~~~l~~~~  381 (392)
                      .+.-. ......+.+++++.++.+++++
T Consensus       148 ~i~Gs-~~Gs~~~~~d~p~li~l~~~GK  174 (174)
T d1e3ia2         148 SINGT-FFGGWKSVDSVPNLVSDYKNKK  174 (174)
T ss_dssp             EEEEC-SGGGCCHHHHHHHHHHHHHTTS
T ss_pred             EEEEE-EeeCCChHHHHHHHHHHHHCcC
Confidence            23211 1112346778888888877654

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=99.85  E-value=4.5e-21  Score=163.63  Aligned_cols=122  Identities=23%  Similarity=0.351  Sum_probs=103.1

Q ss_pred             CCHHhHhccchhHHHHHHHHHhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeC
Q 016265          206 LDFVQAAGLPLAIETAYEGLERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDY  285 (392)
Q Consensus       206 l~~~~aa~l~~~~~ta~~al~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~  285 (392)
                      +|+++||.+ .++.+||++++++++++||+|+|+| +|++|++++|+||. +|+++++++.+++|+++++++|++.+++.
T Consensus         1 VS~e~Aal~-ePla~a~~a~~~~~~~~g~~vlV~G-~G~vG~~~~~~ak~-~Ga~vi~v~~~~~r~~~a~~~ga~~~~~~   77 (170)
T d1e3ja2           1 VSLEEGALL-EPLSVGVHACRRAGVQLGTTVLVIG-AGPIGLVSVLAAKA-YGAFVVCTARSPRRLEVAKNCGADVTLVV   77 (170)
T ss_dssp             SCHHHHHTH-HHHHHHHHHHHHHTCCTTCEEEEEC-CSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHTTCSEEEEC
T ss_pred             CCHHHHHHH-HHHHHHHHHHHHhCCCCCCEEEEEc-ccccchhhHhhHhh-hcccccccchHHHHHHHHHHcCCcEEEec
Confidence            578998866 4555799999999999999999997 89999999999998 59999999999999999999999988765


Q ss_pred             CCC--cccc--------CCCCccEEEecCcc---HHHHHHhcccCCeEEEEcCCCCCC
Q 016265          286 TKD--NFED--------LPEKFDVVYDAIGQ---CDRAVKAIKEGGTVVALTGAVTPP  330 (392)
Q Consensus       286 ~~~--~~~~--------~~~~~D~vid~~G~---~~~~~~~l~~~G~iv~~g~~~~~~  330 (392)
                      +..  +..+        .++++|+||||+|.   ++.++++++++|+++.+|.+..+.
T Consensus        78 ~~~~~~~~~~~~~~~~~~g~g~D~vid~~g~~~~~~~a~~~~~~~G~iv~~G~~~~~~  135 (170)
T d1e3ja2          78 DPAKEEESSIIERIRSAIGDLPNVTIDCSGNEKCITIGINITRTGGTLMLVGMGSQMV  135 (170)
T ss_dssp             CTTTSCHHHHHHHHHHHSSSCCSEEEECSCCHHHHHHHHHHSCTTCEEEECSCCSSCC
T ss_pred             cccccccchhhhhhhcccccCCceeeecCCChHHHHHHHHHHhcCCceEEEecCCCCC
Confidence            432  2111        25689999999994   689999999999999998766443

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=99.85  E-value=8.8e-21  Score=162.50  Aligned_cols=119  Identities=19%  Similarity=0.219  Sum_probs=103.3

Q ss_pred             CHHhHhccchhHHHHHHHH-HhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEE-EeCCcccHHHHHhcCCcEEEe
Q 016265          207 DFVQAAGLPLAIETAYEGL-ERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVA-ATSSTRNLEFLKSLGADLAID  284 (392)
Q Consensus       207 ~~~~aa~l~~~~~ta~~al-~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~-~~~~~~~~~~~~~~G~~~vi~  284 (392)
                      +++.|+.++|++.|||+++ +.+++++|++|+|+| +|++|++++|+||.+ |+++++ ++.+++|+++++++|+++++|
T Consensus         2 P~e~aapl~ca~~Ta~~a~~~~~~~~~g~~VlI~G-~G~iG~~~~~~ak~~-g~~~v~~~~~~~~k~~~a~~~Ga~~~i~   79 (174)
T d1f8fa2           2 PIELLGPLGCGIQTGAGACINALKVTPASSFVTWG-AGAVGLSALLAAKVC-GASIIIAVDIVESRLELAKQLGATHVIN   79 (174)
T ss_dssp             CGGGTGGGGTHHHHHHHHHHTTTCCCTTCEEEEES-CSHHHHHHHHHHHHH-TCSEEEEEESCHHHHHHHHHHTCSEEEE
T ss_pred             CHHHHHHHhhHHHHHHHHHHHhhCCCCCCEEEEeC-CCHHHhhhhhccccc-ccceeeeeccHHHHHHHHHHcCCeEEEe
Confidence            5678999999999999997 567899999999998 699999999999995 887665 567899999999999999999


Q ss_pred             CCCCccccC-----CCCccEEEecCcc---HHHHHHhcccCCeEEEEcCCC
Q 016265          285 YTKDNFEDL-----PEKFDVVYDAIGQ---CDRAVKAIKEGGTVVALTGAV  327 (392)
Q Consensus       285 ~~~~~~~~~-----~~~~D~vid~~G~---~~~~~~~l~~~G~iv~~g~~~  327 (392)
                      ++++++.+.     .+++|+||||+|+   ++.++++++++|+++.+|...
T Consensus        80 ~~~~~~~~~i~~~t~gg~D~vid~~G~~~~~~~~~~~~~~~G~i~~~G~~~  130 (174)
T d1f8fa2          80 SKTQDPVAAIKEITDGGVNFALESTGSPEILKQGVDALGILGKIAVVGAPQ  130 (174)
T ss_dssp             TTTSCHHHHHHHHTTSCEEEEEECSCCHHHHHHHHHTEEEEEEEEECCCCS
T ss_pred             CCCcCHHHHHHHHcCCCCcEEEEcCCcHHHHHHHHhcccCceEEEEEeecC
Confidence            988776442     4589999999994   589999999999999998644

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=99.85  E-value=4.1e-21  Score=165.79  Aligned_cols=114  Identities=30%  Similarity=0.470  Sum_probs=102.4

Q ss_pred             hccchhHHHHHHHHH-hcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCCcc
Q 016265          212 AGLPLAIETAYEGLE-RTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNF  290 (392)
Q Consensus       212 a~l~~~~~ta~~al~-~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~  290 (392)
                      ++++++++|||++|. .+++++||+|||+||+|++|++++|+||. .|++||+++++++|.++++++|+++++++.++++
T Consensus         8 ~~lg~~glTA~~al~~~~~v~~G~~VlV~ga~ggvG~~aiqlak~-~Ga~vi~~~~~~~~~~~~~~~Ga~~vi~~~~~~~   86 (182)
T d1v3va2           8 GTIGMPGLTAYFGLLEVCGVKGGETVLVSAAAGAVGSVVGQIAKL-KGCKVVGAAGSDEKIAYLKQIGFDAAFNYKTVNS   86 (182)
T ss_dssp             TTTSHHHHHHHHHHHTTTCCCSSCEEEESSTTSHHHHHHHHHHHH-TTCEEEEEESSHHHHHHHHHTTCSEEEETTSCSC
T ss_pred             HHHhhHHHHHHHHHHHHhCCCCCCEEEEEeCCCchhHHHHHHHHc-cCCEEEEeCCCHHHHHHHHhhhhhhhcccccccH
Confidence            457889999999995 67899999999999999999999999999 5999999999999999999999999999988775


Q ss_pred             cc------CCCCccEEEecCc--cHHHHHHhcccCCeEEEEcCC
Q 016265          291 ED------LPEKFDVVYDAIG--QCDRAVKAIKEGGTVVALTGA  326 (392)
Q Consensus       291 ~~------~~~~~D~vid~~G--~~~~~~~~l~~~G~iv~~g~~  326 (392)
                      .+      ..+++|+||||+|  .++.++++++++|+++.+|..
T Consensus        87 ~~~~~~~~~~~Gvd~v~D~vG~~~~~~~~~~l~~~G~~v~~G~~  130 (182)
T d1v3va2          87 LEEALKKASPDGYDCYFDNVGGEFLNTVLSQMKDFGKIAICGAI  130 (182)
T ss_dssp             HHHHHHHHCTTCEEEEEESSCHHHHHHHGGGEEEEEEEEECCCG
T ss_pred             HHHHHHHhhcCCCceeEEecCchhhhhhhhhccCCCeEEeecce
Confidence            43      2568999999998  468999999999999999753

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=99.85  E-value=4.3e-21  Score=166.71  Aligned_cols=121  Identities=20%  Similarity=0.309  Sum_probs=102.5

Q ss_pred             CCHHhHhccchhHHHHHHHHH-hcCCCCCCeEEEE-cCCCcHHHHHHHHHHHhcCCeEEEEeCCcc----cHHHHHhcCC
Q 016265          206 LDFVQAAGLPLAIETAYEGLE-RTGFSAGKSILVL-NGSGGVGSLVIQLAKQVFGASRVAATSSTR----NLEFLKSLGA  279 (392)
Q Consensus       206 l~~~~aa~l~~~~~ta~~al~-~~~~~~g~~VlI~-Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~----~~~~~~~~G~  279 (392)
                      ||+++||+++++++|||++|. ..++++|++|+|+ ||+|++|++++|+||++ |++||+++++.+    +.+.++++|+
T Consensus         1 ls~~~AA~l~~~~~TA~~~l~~~~~~~~g~~vli~~ga~g~vG~~aiqlAk~~-Ga~vI~~v~~~~~~~~~~~~~~~lGa   79 (189)
T d1gu7a2           1 LTINQGATISVNPLTAYLMLTHYVKLTPGKDWFIQNGGTSAVGKYASQIGKLL-NFNSISVIRDRPNLDEVVASLKELGA   79 (189)
T ss_dssp             CCHHHHHTCTTHHHHHHHHHHSSSCCCTTTCEEEESCTTSHHHHHHHHHHHHH-TCEEEEEECCCTTHHHHHHHHHHHTC
T ss_pred             CCHHHHHHhhhHHHHHHHHHHHHhCCCCCCEEEEEeCCCchHHHHHHHHHhhc-CCeEEEEEecccccchHHhhhhhccc
Confidence            689999999999999999996 5789999998886 77899999999999995 999999986544    4556789999


Q ss_pred             cEEEeCCCCcccc-----------CCCCccEEEecCc--cHHHHHHhcccCCeEEEEcCCC
Q 016265          280 DLAIDYTKDNFED-----------LPEKFDVVYDAIG--QCDRAVKAIKEGGTVVALTGAV  327 (392)
Q Consensus       280 ~~vi~~~~~~~~~-----------~~~~~D~vid~~G--~~~~~~~~l~~~G~iv~~g~~~  327 (392)
                      |+++++++.+..+           .++++|++|||+|  .+..++++|+++|++|.+|...
T Consensus        80 d~vi~~~~~~~~~~~~~v~~~~~~~g~~vdvv~D~vg~~~~~~~~~~l~~~G~~v~~G~~~  140 (189)
T d1gu7a2          80 TQVITEDQNNSREFGPTIKEWIKQSGGEAKLALNCVGGKSSTGIARKLNNNGLMLTYGGMS  140 (189)
T ss_dssp             SEEEEHHHHHCGGGHHHHHHHHHHHTCCEEEEEESSCHHHHHHHHHTSCTTCEEEECCCCS
T ss_pred             cEEEeccccchhHHHHHHHHHHhhccCCceEEEECCCcchhhhhhhhhcCCcEEEEECCcc
Confidence            9999986544322           1467999999998  4689999999999999998654

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=99.85  E-value=6.3e-21  Score=164.61  Aligned_cols=120  Identities=23%  Similarity=0.346  Sum_probs=103.9

Q ss_pred             CHHhHhccchhHHHHHHHHHh-cCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCC-eEEEEeCCcccHHHHHhcCCcEEEe
Q 016265          207 DFVQAAGLPLAIETAYEGLER-TGFSAGKSILVLNGSGGVGSLVIQLAKQVFGA-SRVAATSSTRNLEFLKSLGADLAID  284 (392)
Q Consensus       207 ~~~~aa~l~~~~~ta~~al~~-~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~-~vv~~~~~~~~~~~~~~~G~~~vi~  284 (392)
                      +++.+|.+.|++.|||+++.+ .++++||+|||+| +|++|++++|+||+ .|+ +|++++.+++|+++++++|+++++|
T Consensus         2 d~~~~a~~~c~~~ta~~al~~~~~~~~G~~VlV~G-aG~iG~~~~~~ak~-~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~   79 (182)
T d1vj0a2           2 DLDVLAMAMCSGATAYHAFDEYPESFAGKTVVIQG-AGPLGLFGVVIARS-LGAENVIVIAGSPNRLKLAEEIGADLTLN   79 (182)
T ss_dssp             CHHHHHHHTTHHHHHHHHHHTCSSCCBTCEEEEEC-CSHHHHHHHHHHHH-TTBSEEEEEESCHHHHHHHHHTTCSEEEE
T ss_pred             cHHHHHHhhcHHHHHHHHHHHHhCCCCCCEEEEEC-CCccchhheecccc-cccccccccccccccccccccccceEEEe
Confidence            356678889999999999964 6899999999998 79999999999999 598 6888899999999999999999999


Q ss_pred             CCCCccccC---------CCCccEEEecCcc---HHHHHHhcccCCeEEEEcCCCC
Q 016265          285 YTKDNFEDL---------PEKFDVVYDAIGQ---CDRAVKAIKEGGTVVALTGAVT  328 (392)
Q Consensus       285 ~~~~~~~~~---------~~~~D~vid~~G~---~~~~~~~l~~~G~iv~~g~~~~  328 (392)
                      +.+.+..+.         +.++|+||||+|.   ++.++++++++|+++.+|....
T Consensus        80 ~~~~~~~~~~~~i~~~~~~~g~Dvvid~vG~~~~~~~a~~~l~~~G~iv~~G~~~~  135 (182)
T d1vj0a2          80 RRETSVEERRKAIMDITHGRGADFILEATGDSRALLEGSELLRRGGFYSVAGVAVP  135 (182)
T ss_dssp             TTTSCHHHHHHHHHHHTTTSCEEEEEECSSCTTHHHHHHHHEEEEEEEEECCCCSC
T ss_pred             ccccchHHHHHHHHHhhCCCCceEEeecCCchhHHHHHHHHhcCCCEEEEEeecCC
Confidence            988764321         4579999999983   6899999999999999986543

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=99.83  E-value=3.8e-20  Score=158.41  Aligned_cols=160  Identities=18%  Similarity=0.169  Sum_probs=116.9

Q ss_pred             HHhHhccchhHHHHHHHH-HhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCC-eEEEEeCCcccHHHHHhcCCcEEEeC
Q 016265          208 FVQAAGLPLAIETAYEGL-ERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGA-SRVAATSSTRNLEFLKSLGADLAIDY  285 (392)
Q Consensus       208 ~~~aa~l~~~~~ta~~al-~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~-~vv~~~~~~~~~~~~~~~G~~~vi~~  285 (392)
                      +.+||.+.|++.|+|+++ +.+++++||+|+|+| +|++|++++|+||++ |+ +|++++.+++|+++++++|+++++|+
T Consensus         2 P~eaa~lgCa~~Ta~~a~~~~a~~~~G~~VlV~G-aGgvGl~a~~~ak~~-G~~~Vi~~d~~~~kl~~a~~lGa~~~i~~   79 (174)
T d1p0fa2           2 PLESCLIGCGFATGYGAAVNTAKVTPGSTCAVFG-LGGVGFSAIVGCKAA-GASRIIGVGTHKDKFPKAIELGATECLNP   79 (174)
T ss_dssp             CGGGGGGGTHHHHHHHHHHTTTCCCTTCEEEEEC-CSHHHHHHHHHHHHH-TCSEEEEECSCGGGHHHHHHTTCSEEECG
T ss_pred             HHHHHhhhhHHHHHHHHHHHhhCCCCCCEEEEEC-CCchhHHHHHHHHHc-CCceeeccCChHHHHHHHHHcCCcEEEcC
Confidence            456899999999999998 568999999999998 899999999999996 86 56677789999999999999999998


Q ss_pred             CCCc--ccc-----CCCCccEEEecCcc---HHHHHHhccc-CCeEEEEcCCCCCCceEEEEeecHHHHHHHHHHHHCCC
Q 016265          286 TKDN--FED-----LPEKFDVVYDAIGQ---CDRAVKAIKE-GGTVVALTGAVTPPGFRFVVTSNGEVLKKLNPYLESGK  354 (392)
Q Consensus       286 ~~~~--~~~-----~~~~~D~vid~~G~---~~~~~~~l~~-~G~iv~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~  354 (392)
                      .+.+  ..+     ..+++|++||++|.   ++.++..+++ +|+++.+|.......+++..          ..++.+..
T Consensus        80 ~~~d~~~~~~~~~~~~~G~d~vid~~g~~~~~~~~~~~~~~~~G~~v~vG~~~~~~~~~~~~----------~~~~~~~~  149 (174)
T d1p0fa2          80 KDYDKPIYEVICEKTNGGVDYAVECAGRIETMMNALQSTYCGSGVTVVLGLASPNERLPLDP----------LLLLTGRS  149 (174)
T ss_dssp             GGCSSCHHHHHHHHTTSCBSEEEECSCCHHHHHHHHHTBCTTTCEEEECCCCCTTCCEEECT----------HHHHTTCE
T ss_pred             CCchhHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHhcCceEEEEEecCccccccCH----------HHHhCCCE
Confidence            6544  222     25689999999994   4677777776 59999998765444433211          11222212


Q ss_pred             cccccCCCcccchhhHHHHHHHHHhCC
Q 016265          355 VKPIIDPKGPFPFSQVVEAFSYIETNK  381 (392)
Q Consensus       355 l~~~~~~t~~~~l~~~~~A~~~l~~~~  381 (392)
                      +.-..  ...+..+|+++.++.+++++
T Consensus       150 i~Gs~--~G~~~~~d~~~lidl~~~gK  174 (174)
T d1p0fa2         150 LKGSV--FGGFKGEEVSRLVDDYMKKK  174 (174)
T ss_dssp             EEECS--GGGCCGGGHHHHHHHHHTTS
T ss_pred             EEEEE--eCCCCHHHHHHHHHHHHcCC
Confidence            22111  12344567777777776653

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=99.83  E-value=5.6e-20  Score=157.54  Aligned_cols=119  Identities=24%  Similarity=0.297  Sum_probs=99.6

Q ss_pred             CHHhHhccchhHHHHHHHHH-hcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCe-EEEEeCCcccHHHHHhcCCcEEEe
Q 016265          207 DFVQAAGLPLAIETAYEGLE-RTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGAS-RVAATSSTRNLEFLKSLGADLAID  284 (392)
Q Consensus       207 ~~~~aa~l~~~~~ta~~al~-~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~-vv~~~~~~~~~~~~~~~G~~~vi~  284 (392)
                      ++++||.++|++.|+|+++. .+++++||+|+|+| +|++|++++|+||.+ |++ +++++++++|+++++++|+++++|
T Consensus         2 P~e~aa~l~ca~~Tay~al~~~~~~~~G~tVlI~G-aGGvG~~aiq~ak~~-G~~~vi~~~~~~~k~~~ak~lGa~~~i~   79 (176)
T d2fzwa2           2 PLDKVCLLGCGISTGYGAAVNTAKLEPGSVCAVFG-LGGVGLAVIMGCKVA-GASRIIGVDINKDKFARAKEFGATECIN   79 (176)
T ss_dssp             CHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEEC-CSHHHHHHHHHHHHH-TCSEEEEECSCGGGHHHHHHHTCSEEEC
T ss_pred             CHHHHhHhhcHHHHHHHHHHHhhCCCCCCEEEEec-chhHHHHHHHHHHHH-hcCceEEEcccHHHHHHHHHhCCcEEEe
Confidence            47899999999999999985 68999999999998 689999999999996 865 555667889999999999999999


Q ss_pred             CCCC--cccc-----CCCCccEEEecCcc---HHHHHHhcccCCeEEEEcCCC
Q 016265          285 YTKD--NFED-----LPEKFDVVYDAIGQ---CDRAVKAIKEGGTVVALTGAV  327 (392)
Q Consensus       285 ~~~~--~~~~-----~~~~~D~vid~~G~---~~~~~~~l~~~G~iv~~g~~~  327 (392)
                      +.+.  ...+     ..+++|++||++|.   ++.++.++++||+++.++...
T Consensus        80 ~~~~~~~~~~~~~~~~~~g~D~vid~~G~~~~~~~~~~~~~~g~~~~~v~~~~  132 (176)
T d2fzwa2          80 PQDFSKPIQEVLIEMTDGGVDYSFECIGNVKVMRAALEACHKGWGVSVVVGVA  132 (176)
T ss_dssp             GGGCSSCHHHHHHHHTTSCBSEEEECSCCHHHHHHHHHTBCTTTCEEEECSCC
T ss_pred             CCchhhHHHHHHHHHcCCCCcEeeecCCCHHHHHHHHHhhcCCceeEEEEeec
Confidence            8543  2221     25689999999994   578899999999988776544

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=99.81  E-value=1.2e-19  Score=158.00  Aligned_cols=117  Identities=20%  Similarity=0.248  Sum_probs=103.3

Q ss_pred             HhHhccchhHHHHHHHHHhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCC-eEEEEeCCcccHHHHHhcCCcEEEeCCC
Q 016265          209 VQAAGLPLAIETAYEGLERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGA-SRVAATSSTRNLEFLKSLGADLAIDYTK  287 (392)
Q Consensus       209 ~~aa~l~~~~~ta~~al~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~-~vv~~~~~~~~~~~~~~~G~~~vi~~~~  287 (392)
                      ++.+++...+.|||++++++++++||+|||+| +|++|++++|+||.+ |+ ++++++.+++|+++++++|+++++++.+
T Consensus         2 ~d~~~l~d~~~ta~~a~~~a~v~~G~tVlV~G-aG~vGl~a~~~ak~~-ga~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~   79 (195)
T d1kola2           2 RDLTCLSDILPTGYHGAVTAGVGPGSTVYVAG-AGPVGLAAAASARLL-GAAVVIVGDLNPARLAHAKAQGFEIADLSLD   79 (195)
T ss_dssp             HHHGGGGTHHHHHHHHHHHTTCCTTCEEEEEC-CSHHHHHHHHHHHHT-TCSEEEEEESCHHHHHHHHHTTCEEEETTSS
T ss_pred             chHHhcccHHHHHHHHHHHhCCCCCCEEEEEC-cCHHHHHHHHHHHhh-cccceeeecccchhhHhhhhccccEEEeCCC
Confidence            56788899999999999999999999999998 899999999999985 77 6777788999999999999999999888


Q ss_pred             Ccccc------CCCCccEEEecCc------------------cHHHHHHhcccCCeEEEEcCCC
Q 016265          288 DNFED------LPEKFDVVYDAIG------------------QCDRAVKAIKEGGTVVALTGAV  327 (392)
Q Consensus       288 ~~~~~------~~~~~D~vid~~G------------------~~~~~~~~l~~~G~iv~~g~~~  327 (392)
                      .++.+      .+.++|++|||+|                  .++.++++++++|+++.+|.+.
T Consensus        80 ~~~~~~i~~~t~g~g~D~vid~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~G~~~  143 (195)
T d1kola2          80 TPLHEQIAALLGEPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPGLYV  143 (195)
T ss_dssp             SCHHHHHHHHHSSSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECSCCC
T ss_pred             cCHHHHHHHHhCCCCcEEEEECccccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEeeecC
Confidence            77643      2458999999998                  2689999999999999998654

>d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=99.81  E-value=4.3e-20  Score=158.14  Aligned_cols=121  Identities=28%  Similarity=0.298  Sum_probs=105.3

Q ss_pred             CCHHhHhccchhHHHHHHHH---HhcCC-CCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcE
Q 016265          206 LDFVQAAGLPLAIETAYEGL---ERTGF-SAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADL  281 (392)
Q Consensus       206 l~~~~aa~l~~~~~ta~~al---~~~~~-~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~  281 (392)
                      +|+.+|++++++.+|||+++   ..... ..+++|||+||+|++|++++|+||.+ |++||+++++++|.+.++++|+|+
T Consensus         1 l~~~~Aa~lg~aGlTA~~a~~~l~~~g~~~~~~~vlV~gasGGVG~~aiQlAk~~-Ga~Via~~~~~~k~~~~~~lGad~   79 (177)
T d1o89a2           1 LDARKAMIIGTAGFTAMLCVMALEDAGVRPQDGEIVVTGASGGVGSTAVALLHKL-GYQVVAVSGRESTHEYLKSLGASR   79 (177)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCEEEESSTTSHHHHHHHHHHHHT-TCCEEEEESCGGGHHHHHHHTEEE
T ss_pred             CCHHHHHHcccHHHHHHHHHHHHHHhCCCCCCCcEEEEEccccchHHHHHHHHHc-CCCeEEEecchhHHHHHHhhcccc
Confidence            58899999999999999775   34444 45569999999999999999999995 999999999999999999999999


Q ss_pred             EEeCCCCccccC--CCCccEEEecCc--cHHHHHHhcccCCeEEEEcCCC
Q 016265          282 AIDYTKDNFEDL--PEKFDVVYDAIG--QCDRAVKAIKEGGTVVALTGAV  327 (392)
Q Consensus       282 vi~~~~~~~~~~--~~~~D~vid~~G--~~~~~~~~l~~~G~iv~~g~~~  327 (392)
                      ++|+++.++.+.  ...+|.++|++|  .++..+++++++|+++.+|...
T Consensus        80 vi~~~~~~~~~~l~~~~~~~vvD~Vgg~~~~~~l~~l~~~Griv~~G~~~  129 (177)
T d1o89a2          80 VLPRDEFAESRPLEKQVWAGAIDTVGDKVLAKVLAQMNYGGCVAACGLAG  129 (177)
T ss_dssp             EEEGGGSSSCCSSCCCCEEEEEESSCHHHHHHHHHTEEEEEEEEECCCTT
T ss_pred             ccccccHHHHHHHHhhcCCeeEEEcchHHHHHHHHHhccccceEeecccC
Confidence            999987666543  345899999998  4799999999999999998654

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=99.81  E-value=3.1e-19  Score=152.74  Aligned_cols=119  Identities=18%  Similarity=0.221  Sum_probs=98.4

Q ss_pred             CHHhHhccchhHHHHHHHH-HhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCC-eEEEEeCCcccHHHHHhcCCcEEEe
Q 016265          207 DFVQAAGLPLAIETAYEGL-ERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGA-SRVAATSSTRNLEFLKSLGADLAID  284 (392)
Q Consensus       207 ~~~~aa~l~~~~~ta~~al-~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~-~vv~~~~~~~~~~~~~~~G~~~vi~  284 (392)
                      ++++||.++|++.|+|+++ +.+++++||+|+|+| +|++|++++++++.. |+ +|++++++++|++.++++|+|+++|
T Consensus         2 P~e~aa~l~ca~~Tay~a~~~~a~~k~g~~VlI~G-~Gg~g~~~~~~~~~~-g~~~Vi~~~~~~~rl~~a~~~GAd~~in   79 (175)
T d1cdoa2           2 PLDTVCLLGCGVSTGFGAAVNTAKVEPGSTCAVFG-LGAVGLAAVMGCHSA-GAKRIIAVDLNPDKFEKAKVFGATDFVN   79 (175)
T ss_dssp             CHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEEC-CSHHHHHHHHHHHHT-TCSEEEEECSCGGGHHHHHHTTCCEEEC
T ss_pred             CHHHHHHhhcHHHHHHHHHHHhhCCCCCCEEEEEe-cCCccchHHHHHHHH-hhchheeecchHHHHHHHHHcCCcEEEc
Confidence            5789999999999999998 568999999999998 899999999999985 55 6777788999999999999999999


Q ss_pred             CCCCcc--cc-----CCCCccEEEecCcc---HHHHHHhcccCCeEEEEcCCC
Q 016265          285 YTKDNF--ED-----LPEKFDVVYDAIGQ---CDRAVKAIKEGGTVVALTGAV  327 (392)
Q Consensus       285 ~~~~~~--~~-----~~~~~D~vid~~G~---~~~~~~~l~~~G~iv~~g~~~  327 (392)
                      +.+++.  .+     ..+++|++||++|.   ++.++.+++++|.++.+++..
T Consensus        80 ~~~~~~~~~~~~~~~~~~G~d~vid~~G~~~~~~~a~~~~~~g~~~~~~~g~~  132 (175)
T d1cdoa2          80 PNDHSEPISQVLSKMTNGGVDFSLECVGNVGVMRNALESCLKGWGVSVLVGWT  132 (175)
T ss_dssp             GGGCSSCHHHHHHHHHTSCBSEEEECSCCHHHHHHHHHTBCTTTCEEEECSCC
T ss_pred             CCCcchhHHHHHHhhccCCcceeeeecCCHHHHHHHHHHhhCCCcceeEEEec
Confidence            866542  22     14689999999994   477888888876666554443

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.80  E-value=5.5e-20  Score=159.31  Aligned_cols=119  Identities=24%  Similarity=0.439  Sum_probs=96.4

Q ss_pred             CCHHhHhccchhHHHHHHHHH-hcCCCCC--CeEEEEcCCCcHHHHHHHHHHHhcCCeEEE-EeCCcccHH-HHHhcCCc
Q 016265          206 LDFVQAAGLPLAIETAYEGLE-RTGFSAG--KSILVLNGSGGVGSLVIQLAKQVFGASRVA-ATSSTRNLE-FLKSLGAD  280 (392)
Q Consensus       206 l~~~~aa~l~~~~~ta~~al~-~~~~~~g--~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~-~~~~~~~~~-~~~~~G~~  280 (392)
                      +|+.+.| ++++++|||++|. ..++++|  |+|||+||+|++|++++|+||. .|+++|+ ++.++++.. +++++|+|
T Consensus         2 ~~~~~ga-lg~~glTA~~~l~~~~~~~~G~~etVLI~gaaGgVG~~aiQlak~-~Ga~~vi~~~~~~e~~~~l~~~~gad   79 (187)
T d1vj1a2           2 LSYFLGA-IGMPGLTSLIGVQEKGHISAGSNQTMVVSGAAGACGSLAGQIGHL-LGCSRVVGICGTQEKCLFLTSELGFD   79 (187)
T ss_dssp             GGGGGTT-TSHHHHHHHHHHHHHSCCCTTSCCEEEESSTTSTTGGGHHHHHHH-TTCSEEEEEESSHHHHHHHHHHSCCS
T ss_pred             ccHHHHH-hhcHHHHHHHHHHHHhCCCCCCCCEEEEECCCchhhHHHHHHHHH-cCCcceecccchHHHHhhhhhcccce
Confidence            4555554 6788999999994 5788887  8999999999999999999999 4987665 455665544 55689999


Q ss_pred             EEEeCCCCccccC-----CCCccEEEecCc--cHHHHHHhcccCCeEEEEcCC
Q 016265          281 LAIDYTKDNFEDL-----PEKFDVVYDAIG--QCDRAVKAIKEGGTVVALTGA  326 (392)
Q Consensus       281 ~vi~~~~~~~~~~-----~~~~D~vid~~G--~~~~~~~~l~~~G~iv~~g~~  326 (392)
                      +++|+.++++.+.     .+|+|+|||++|  .++.++++++++|+++.+|..
T Consensus        80 ~vi~~~~~~~~~~~~~~~~~GvDvv~D~vGg~~~~~~~~~l~~~G~iv~~G~~  132 (187)
T d1vj1a2          80 AAVNYKTGNVAEQLREACPGGVDVYFDNVGGDISNTVISQMNENSHIILCGQI  132 (187)
T ss_dssp             EEEETTSSCHHHHHHHHCTTCEEEEEESSCHHHHHHHHTTEEEEEEEEEC---
T ss_pred             EEeeccchhHHHHHHHHhccCceEEEecCCchhHHHHhhhccccccEEEeccc
Confidence            9999998877542     568999999998  478999999999999999853

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=99.80  E-value=7.1e-19  Score=150.67  Aligned_cols=120  Identities=18%  Similarity=0.239  Sum_probs=98.2

Q ss_pred             CHHhHhccchhHHHHHHHH-HhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeC
Q 016265          207 DFVQAAGLPLAIETAYEGL-ERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDY  285 (392)
Q Consensus       207 ~~~~aa~l~~~~~ta~~al-~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~  285 (392)
                      ++++||.++|++.|+|+++ +.+++++||+|+|+| +|++|++++|+++...+.+|++++.+++|+++++++|+++++++
T Consensus         2 Ple~aa~l~ca~~Tay~al~~~~~vk~GdtVlV~G-aGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~Ga~~~i~~   80 (176)
T d2jhfa2           2 PLEKVCLIGCGFSTGYGSAVKVAKVTQGSTCAVFG-LGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVNP   80 (176)
T ss_dssp             CHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEEC-CSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECG
T ss_pred             CHHHHhHhhcHHHHHHHHHHHhhCCCCCCEEEEEC-CCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHhCCeeEEec
Confidence            4788999999999999998 568999999999998 68999999999998533577788889999999999999999987


Q ss_pred             CCC-c-ccc-----CCCCccEEEecCcc---HHHHHHhcccCCeEEEEcCCC
Q 016265          286 TKD-N-FED-----LPEKFDVVYDAIGQ---CDRAVKAIKEGGTVVALTGAV  327 (392)
Q Consensus       286 ~~~-~-~~~-----~~~~~D~vid~~G~---~~~~~~~l~~~G~iv~~g~~~  327 (392)
                      .+. + ..+     ..+++|++||++|.   .+.++..++++|+.+.++...
T Consensus        81 ~~~~~~~~~~~~~~~~~G~D~vid~~G~~~~~~~a~~~~~~~~g~~~~~~~~  132 (176)
T d2jhfa2          81 QDYKKPIQEVLTEMSNGGVDFSFEVIGRLDTMVTALSCCQEAYGVSVIVGVP  132 (176)
T ss_dssp             GGCSSCHHHHHHHHTTSCBSEEEECSCCHHHHHHHHHHBCTTTCEEEECSCC
T ss_pred             CCchhHHHHHHHHHhcCCCCEEEecCCchhHHHHHHHHHhcCCcceEEecCC
Confidence            542 2 221     25689999999983   578899999986655555443

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=99.79  E-value=6e-19  Score=151.06  Aligned_cols=123  Identities=19%  Similarity=0.205  Sum_probs=102.9

Q ss_pred             CHHhHhccchhHHHHHHHH-HhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCC-eEEEEeCCcccHHHHHhcCCcEEEe
Q 016265          207 DFVQAAGLPLAIETAYEGL-ERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGA-SRVAATSSTRNLEFLKSLGADLAID  284 (392)
Q Consensus       207 ~~~~aa~l~~~~~ta~~al-~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~-~vv~~~~~~~~~~~~~~~G~~~vi~  284 (392)
                      ++++||.++|++.|+|+++ +.+++++||+|+|+| +|++|++++|++|+. |+ +||+++.+++|+++++++|+++++|
T Consensus         3 P~e~aa~l~Ca~~T~~~Av~~~~~~~~g~tVlI~G-~GgvGl~ai~~ak~~-G~~~Vi~vd~~~~kl~~Ak~~GA~~~in   80 (176)
T d1d1ta2           3 PPEKVCLIGCGFSTGYGAAVKTGKVKPGSTCVVFG-LGGVGLSVIMGCKSA-GASRIIGIDLNKDKFEKAMAVGATECIS   80 (176)
T ss_dssp             CHHHHGGGGTHHHHHHHHHHTTSCCCTTCEEEEEC-CSHHHHHHHHHHHHT-TCSEEEEECSCGGGHHHHHHHTCSEEEC
T ss_pred             CHHHHHhhhhHHHHHHHHHHHhhCCCCCCEEEEEC-CCchhHHHHHHHHHc-CCceEEEecCcHHHHHHHHhcCCcEEEC
Confidence            4889999999999999998 568899999999998 899999999999995 75 7888889999999999999999999


Q ss_pred             CCCCcc-cc------CCCCccEEEecCcc---HHHHHHhcccC-CeEEEEcCCCCCCc
Q 016265          285 YTKDNF-ED------LPEKFDVVYDAIGQ---CDRAVKAIKEG-GTVVALTGAVTPPG  331 (392)
Q Consensus       285 ~~~~~~-~~------~~~~~D~vid~~G~---~~~~~~~l~~~-G~iv~~g~~~~~~~  331 (392)
                      +.+.+. .+      ..+|+|++||++|.   ++.++..+.++ |+++.+|.......
T Consensus        81 ~~~~~~~~~~~~~~~~g~G~d~vi~~~g~~~~~~~a~~~~~~~~G~~v~vG~~~~~~~  138 (176)
T d1d1ta2          81 PKDSTKPISEVLSEMTGNNVGYTFEVIGHLETMIDALASCHMNYGTSVVVGVPPSAKM  138 (176)
T ss_dssp             GGGCSSCHHHHHHHHHTSCCCEEEECSCCHHHHHHHHTTSCTTTCEEEECSCCCTTCC
T ss_pred             ccccchHHHHHHHHhccccceEEEEeCCchHHHHHHHHHhhcCCeEEEEEEccccccc
Confidence            876442 11      25689999999994   45666666555 99999987654433

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=99.75  E-value=8.3e-19  Score=148.56  Aligned_cols=110  Identities=26%  Similarity=0.294  Sum_probs=92.4

Q ss_pred             hHHHHHH---HHHh-cCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCCcccc
Q 016265          217 AIETAYE---GLER-TGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFED  292 (392)
Q Consensus       217 ~~~ta~~---al~~-~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~~  292 (392)
                      +..|||.   +|.+ ...++|++|||+||+|++|++++|+||.+ |++||.++++++|.++++++|+|+++++++...+.
T Consensus         4 aGlTA~~a~~~L~~~g~~~~~~~VLV~gaaGgVG~~avQlAk~~-Ga~Viat~~s~~k~~~~~~lGad~vi~~~~~~~~~   82 (167)
T d1tt7a2           4 AGFTAALSVHRLEQNGLSPEKGSVLVTGATGGVGGIAVSMLNKR-GYDVVASTGNREAADYLKQLGASEVISREDVYDGT   82 (167)
T ss_dssp             HHHHHHHHHHHHHHTTCCGGGCCEEEESTTSHHHHHHHHHHHHH-TCCEEEEESSSSTHHHHHHHTCSEEEEHHHHCSSC
T ss_pred             hHHHHHHHHHHHHHhcCCCCCCEEEEeCCcchHHHHHHHHHHHc-CCceEEEecCHHHHHHHHhhcccceEeccchhchh
Confidence            4556764   4543 45667889999999999999999999995 99999999999999999999999999876433222


Q ss_pred             ----CCCCccEEEecCc--cHHHHHHhcccCCeEEEEcCCC
Q 016265          293 ----LPEKFDVVYDAIG--QCDRAVKAIKEGGTVVALTGAV  327 (392)
Q Consensus       293 ----~~~~~D~vid~~G--~~~~~~~~l~~~G~iv~~g~~~  327 (392)
                          ..+++|+|||++|  .++.++++|+++|+++.+|...
T Consensus        83 ~~~~~~~gvd~vid~vgg~~~~~~~~~l~~~G~iv~~G~~~  123 (167)
T d1tt7a2          83 LKALSKQQWQGAVDPVGGKQLASLLSKIQYGGSVAVSGLTG  123 (167)
T ss_dssp             CCSSCCCCEEEEEESCCTHHHHHHHTTEEEEEEEEECCCSS
T ss_pred             hhcccCCCceEEEecCcHHHHHHHHHHhccCceEEEeeccC
Confidence                2468999999998  4799999999999999998765

>d1v3va1 b.35.1.2 (A:1-112,A:295-329) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=99.66  E-value=9e-16  Score=126.43  Aligned_cols=134  Identities=15%  Similarity=0.173  Sum_probs=101.3

Q ss_pred             ceeEEEEccc--CCc--ceEEEeccccCCCCCCCeEEEEEeEEecChHhHHhhcCCCCCCCCCCCCcCCCceeEEEEEeC
Q 016265           83 EMKAWLYGEY--GGV--DVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVG  158 (392)
Q Consensus        83 ~mka~v~~~~--~~~--~~l~~~~~~~~p~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~~~p~v~G~e~~G~V~~vG  158 (392)
                      +.|+|++.+.  |.+  +.|+++ +.++|+|++||||||+.|.++++........      .+.+.++..+++|+|++  
T Consensus         3 ~~k~~vl~~~P~G~P~~~~f~l~-e~~ip~~~~gevLvk~~~~svDp~~R~~~~~------~~~g~~~~g~~vg~Vv~--   73 (147)
T d1v3va1           3 KAKSWTLKKHFQGKPTQSDFELK-TVELPPLKNGEVLLEALFLSVDPYMRIASKR------LKEGAVMMGQQVARVVE--   73 (147)
T ss_dssp             EEEEEEESSCCCSSCCGGGEEEE-EEECCCCCTTCEEEEEEEEECCTHHHHHGGG------SCTTSBCCCCEEEEEEE--
T ss_pred             ccEEEEEccCCCCCCcccceEEE-EEECCCCCCCEEEEEEEEEeEcccccccccc------cccCCccccceEEEEEE--
Confidence            3588999775  433  569999 8999999999999999999999876543321      12234566688999987  


Q ss_pred             CCCCCCCCCCEEEecccccccCCCCCCCcceeEEEecCCceeeCCCCCCHH-----hHhccchhHHHH-HHHHHhcCCCC
Q 016265          159 TQVKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFV-----QAAGLPLAIETA-YEGLERTGFSA  232 (392)
Q Consensus       159 ~~v~~~~vGdrV~~~~~~~~~~~~~~~G~~a~~~~v~~~~~~~iP~~l~~~-----~aa~l~~~~~ta-~~al~~~~~~~  232 (392)
                      +++++|++||+|++            .++|+||.+++...+.++|+.++..     ..+++....+|| |.++. ...+.
T Consensus        74 S~~~~f~~GD~V~g------------~~gw~ey~v~~~~~l~kv~~~~~~~~~~~~~~~~lG~~Gmtaay~gl~-~~~k~  140 (147)
T d1v3va1          74 SKNSAFPAGSIVLA------------QSGWTTHFISDGKGLEKLLTEWPDKKIQYHEHVTKGFENMPAAFIEML-NGANL  140 (147)
T ss_dssp             ESCTTSCTTCEEEE------------CCCSBSEEEECSSSCEECCTTCCTTSSCCCEEEEECGGGHHHHHHHHH-TTCCS
T ss_pred             eCCCcccCCCEEEE------------ccCCEeEEEeccceeeEccccccccccchhhhHhccccchHHHHHHhh-CCCCC
Confidence            77889999999997            3789999999999999998765433     344555566664 54663 33577


Q ss_pred             CCeEEE
Q 016265          233 GKSILV  238 (392)
Q Consensus       233 g~~VlI  238 (392)
                      |++|++
T Consensus       141 Getvv~  146 (147)
T d1v3va1         141 GKAVVT  146 (147)
T ss_dssp             SEEEEE
T ss_pred             CCEEEe
Confidence            999987

>d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=99.54  E-value=6.5e-15  Score=106.71  Aligned_cols=73  Identities=34%  Similarity=0.332  Sum_probs=66.9

Q ss_pred             CCHHhHhccchhHHHHHHHHH----hcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCC
Q 016265          206 LDFVQAAGLPLAIETAYEGLE----RTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGA  279 (392)
Q Consensus       206 l~~~~aa~l~~~~~ta~~al~----~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~  279 (392)
                      +|+++|+.+++++.|||.++.    ....++|++|||+||+|++|.+++|+||.+ |++|+++++++++.++++++||
T Consensus         1 ls~~eAa~lg~aGlTA~~al~~~~~~~~~~~~~~vlI~gasGgVG~~aiQlak~~-G~~Vi~~t~s~~k~~~~~~lGA   77 (77)
T d1o8ca2           1 LDARKAMIIGTAGFTAMLCVMALEDAGVRPQDGEIVVTGASGGVGSTAVALLHKL-GYQVVAVSGRESTHEYLKSLGA   77 (77)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCEEEESSTTSHHHHHHHHHHHHT-TCCEEEEESCGGGHHHHHHHTE
T ss_pred             CCHHHHHHhhhHHHHHHHHHHHHHhhhhccCCCcEEEEeCCCcHHHHHHHHHHHc-CCeEEEEECCHHHHHHHHHCCC
Confidence            589999999999999998773    356789999999999999999999999995 9999999999999999999985

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=97.88  E-value=9.9e-06  Score=66.12  Aligned_cols=91  Identities=19%  Similarity=0.293  Sum_probs=71.4

Q ss_pred             CCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCc--EEEeCCCCccccCCCCccEEEecC---cc-
Q 016265          233 GKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGAD--LAIDYTKDNFEDLPEKFDVVYDAI---GQ-  306 (392)
Q Consensus       233 g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~--~vi~~~~~~~~~~~~~~D~vid~~---G~-  306 (392)
                      .-+|+|+| +|-+|+.|++.|+.+ |+.|.+.+.+.++++.+++....  ......++.+.+....+|+||.++   |. 
T Consensus        32 pa~V~ViG-aGvaG~~A~~~A~~l-GA~V~~~D~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~aDivI~aalipG~~  109 (168)
T d1pjca1          32 PGKVVILG-GGVVGTEAAKMAVGL-GAQVQIFDINVERLSYLETLFGSRVELLYSNSAEIETAVAEADLLIGAVLVPGRR  109 (168)
T ss_dssp             CCEEEEEC-CSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHGGGSEEEECCHHHHHHHHHTCSEEEECCCCTTSS
T ss_pred             CcEEEEEC-CChHHHHHHHHHhhC-CCEEEEEeCcHHHHHHHHHhhcccceeehhhhhhHHHhhccCcEEEEeeecCCcc
Confidence            46799998 999999999999995 99999999999999988765422  223333334444455789999985   31 


Q ss_pred             -----HHHHHHhcccCCeEEEEcC
Q 016265          307 -----CDRAVKAIKEGGTVVALTG  325 (392)
Q Consensus       307 -----~~~~~~~l~~~G~iv~~g~  325 (392)
                           .+.+++.|++|..+|++..
T Consensus       110 aP~lIt~~mv~~Mk~GSVIVDvai  133 (168)
T d1pjca1         110 APILVPASLVEQMRTGSVIVDVAV  133 (168)
T ss_dssp             CCCCBCHHHHTTSCTTCEEEETTC
T ss_pred             cCeeecHHHHhhcCCCcEEEEeec
Confidence                 3899999999999999854

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=97.87  E-value=1.1e-05  Score=66.81  Aligned_cols=91  Identities=24%  Similarity=0.318  Sum_probs=69.3

Q ss_pred             CCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEe-C-CCCc--------------c------
Q 016265          233 GKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAID-Y-TKDN--------------F------  290 (392)
Q Consensus       233 g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~-~-~~~~--------------~------  290 (392)
                      .-+|+|+| +|.+|+.|+..|+.+ |+.|.+.+.+.++++.++++|...+.- . ....              +      
T Consensus        29 pa~VvViG-aGvaG~~Aa~~A~~l-GA~V~v~D~~~~~~~~l~~l~~~~i~~~~~~~~~~~~~~gyA~~~s~~~~~~~~~  106 (183)
T d1l7da1          29 PARVLVFG-VGVAGLQAIATAKRL-GAVVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQAE  106 (183)
T ss_dssp             CCEEEEEC-CSHHHHHHHHHHHHT-TCEEEEECSCSTTHHHHHHTTCEECCC-----------------------CCHHH
T ss_pred             CcEEEEEc-CcHHHHHHHHHHHHc-CCEEEEEeccHHHHHHHHHhhcceEEEeccccccccccccchhhcCHHHHHHHHH
Confidence            35799998 999999999999995 999999999999999999998755421 0 0000              0      


Q ss_pred             --ccCCCCccEEEecC---cc------HHHHHHhcccCCeEEEEcC
Q 016265          291 --EDLPEKFDVVYDAI---GQ------CDRAVKAIKEGGTVVALTG  325 (392)
Q Consensus       291 --~~~~~~~D~vid~~---G~------~~~~~~~l~~~G~iv~~g~  325 (392)
                        .+.....|+||-++   |.      .+.+++.|++|+.||+++.
T Consensus       107 ~l~~~l~~aDlVI~talipG~~aP~lit~~mv~~Mk~GSVIVDvai  152 (183)
T d1l7da1         107 AVLKELVKTDIAITTALIPGKPAPVLITEEMVTKMKPGSVIIDLAV  152 (183)
T ss_dssp             HHHHHHTTCSEEEECCCCTTSCCCCCSCHHHHTTSCTTCEEEETTG
T ss_pred             HHHHHHHhhhhheeeeecCCcccceeehHHHHHhcCCCcEEEEEee
Confidence              01123689999885   31      3899999999999999843

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.72  E-value=9.9e-05  Score=63.09  Aligned_cols=98  Identities=23%  Similarity=0.290  Sum_probs=68.3

Q ss_pred             HHHHhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcC--CeEEEEeCCcccHHHHHh----cCCcEEE--eCCCCccccCC
Q 016265          223 EGLERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFG--ASRVAATSSTRNLEFLKS----LGADLAI--DYTKDNFEDLP  294 (392)
Q Consensus       223 ~al~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G--~~vv~~~~~~~~~~~~~~----~G~~~vi--~~~~~~~~~~~  294 (392)
                      ..++..++++|++||-+| +|. |..++.+|+.. |  .+|+.++.+++..+.+++    .+.+.+.  ..+........
T Consensus        66 ~~l~~l~l~~g~~VLdiG-~Gt-G~~s~~la~~~-~~~g~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~d~~~~~~~~  142 (213)
T d1dl5a1          66 LFMEWVGLDKGMRVLEIG-GGT-GYNAAVMSRVV-GEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEF  142 (213)
T ss_dssp             HHHHHTTCCTTCEEEEEC-CTT-SHHHHHHHHHH-CTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGG
T ss_pred             HHHHhhhccccceEEEec-Ccc-chhHHHHHHHh-CCCCcEEEeecchhhHHHhhhhHhhhcccccccccCchHHccccc
Confidence            356788999999999998 554 88888999875 5  468888888887777643    3443322  11111111123


Q ss_pred             CCccEEEecCc--c-HHHHHHhcccCCeEEEE
Q 016265          295 EKFDVVYDAIG--Q-CDRAVKAIKEGGTVVAL  323 (392)
Q Consensus       295 ~~~D~vid~~G--~-~~~~~~~l~~~G~iv~~  323 (392)
                      ..||+|+...+  . .+.+++.|+|||+++..
T Consensus       143 ~~fD~I~~~~~~~~~p~~l~~~LkpGG~lv~p  174 (213)
T d1dl5a1         143 SPYDVIFVTVGVDEVPETWFTQLKEGGRVIVP  174 (213)
T ss_dssp             CCEEEEEECSBBSCCCHHHHHHEEEEEEEEEE
T ss_pred             cchhhhhhhccHHHhHHHHHHhcCCCcEEEEE
Confidence            46999998755  2 47889999999999874

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.59  E-value=0.00012  Score=62.55  Aligned_cols=100  Identities=18%  Similarity=0.211  Sum_probs=70.9

Q ss_pred             HHHHHhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHH----HhcCCcEEEeCCCCccc--cCCC
Q 016265          222 YEGLERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFL----KSLGADLAIDYTKDNFE--DLPE  295 (392)
Q Consensus       222 ~~al~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~----~~~G~~~vi~~~~~~~~--~~~~  295 (392)
                      ...++..++++|++||.+|  ++.|..++.+|+.. |.+|+.++..++-.+.+    +++|.+.+.-...+...  ....
T Consensus        68 a~ml~~L~l~~g~~VLeIG--sGsGY~taila~l~-g~~V~~ie~~~~l~~~a~~~l~~~g~~nv~~~~gd~~~g~~~~~  144 (215)
T d1jg1a_          68 AIMLEIANLKPGMNILEVG--TGSGWNAALISEIV-KTDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFPPKA  144 (215)
T ss_dssp             HHHHHHHTCCTTCCEEEEC--CTTSHHHHHHHHHH-CSCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGC
T ss_pred             HHHHHhhccCccceEEEec--CCCChhHHHHHHhh-CceeEEEeccHHHHHHHHHHHHHcCCceeEEEECccccCCcccC
Confidence            3456778999999999997  45688888899875 87888888876654444    45676554332222111  2235


Q ss_pred             CccEEEecCc--c-HHHHHHhcccCCeEEEEc
Q 016265          296 KFDVVYDAIG--Q-CDRAVKAIKEGGTVVALT  324 (392)
Q Consensus       296 ~~D~vid~~G--~-~~~~~~~l~~~G~iv~~g  324 (392)
                      .||+++-+.+  . .+..++.|++||++|..-
T Consensus       145 pfD~Iiv~~a~~~ip~~l~~qL~~gGrLv~pv  176 (215)
T d1jg1a_         145 PYDVIIVTAGAPKIPEPLIEQLKIGGKLIIPV  176 (215)
T ss_dssp             CEEEEEECSBBSSCCHHHHHTEEEEEEEEEEE
T ss_pred             cceeEEeecccccCCHHHHHhcCCCCEEEEEE
Confidence            7999987655  2 478999999999998753

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.53  E-value=0.00013  Score=65.09  Aligned_cols=96  Identities=16%  Similarity=0.262  Sum_probs=69.2

Q ss_pred             HHhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHh----cCCcEEEeCCCCccccCCCCccEE
Q 016265          225 LERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKS----LGADLAIDYTKDNFEDLPEKFDVV  300 (392)
Q Consensus       225 l~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~----~G~~~vi~~~~~~~~~~~~~~D~v  300 (392)
                      ++++++++|++||=+|  .|.|..++.+|+. +|++|+.++.++++.+.+++    .|...-+.....++.+..+.+|.|
T Consensus        55 ~~~l~l~~G~~VLDiG--CG~G~~a~~~a~~-~g~~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~fD~i  131 (285)
T d1kpga_          55 LGKLGLQPGMTLLDVG--CGWGATMMRAVEK-YDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFDEPVDRI  131 (285)
T ss_dssp             HTTTTCCTTCEEEEET--CTTSHHHHHHHHH-HCCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCCCCCSEE
T ss_pred             HHHcCCCCCCEEEEec--CcchHHHHHHHhc-CCcceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhhhcccccccce
Confidence            3678999999999997  4568889999998 59999999999998877744    342222222223444556678887


Q ss_pred             Ee-----cCcc------HHHHHHhcccCCeEEEE
Q 016265          301 YD-----AIGQ------CDRAVKAIKEGGTVVAL  323 (392)
Q Consensus       301 id-----~~G~------~~~~~~~l~~~G~iv~~  323 (392)
                      +.     .+|.      +..+.++|+|||+++.-
T Consensus       132 ~si~~~eh~~~~~~~~~~~~~~r~LkpgG~~~l~  165 (285)
T d1kpga_         132 VSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLH  165 (285)
T ss_dssp             EEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEE
T ss_pred             eeehhhhhcCchhHHHHHHHHHhhcCCCCcEEEE
Confidence            63     2331      46788899999998753

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=97.52  E-value=0.00023  Score=62.22  Aligned_cols=74  Identities=22%  Similarity=0.314  Sum_probs=54.5

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEE-EeCCCCc-ccc-------CCCCccEEE
Q 016265          231 SAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLA-IDYTKDN-FED-------LPEKFDVVY  301 (392)
Q Consensus       231 ~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~v-i~~~~~~-~~~-------~~~~~D~vi  301 (392)
                      -.|+++||+||++++|.+.++.... .|++|+++++++++++.+++.+...+ .|..+.. ..+       .-+++|++|
T Consensus         3 l~GK~alITGas~GIG~aia~~la~-~G~~V~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~iDiLV   81 (248)
T d2d1ya1           3 FAGKGVLVTGGARGIGRAIAQAFAR-EGALVALCDLRPEGKEVAEAIGGAFFQVDLEDERERVRFVEEAAYALGRVDVLV   81 (248)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHH-TTCEEEEEESSTTHHHHHHHHTCEEEECCTTCHHHHHHHHHHHHHHHSCCCEEE
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHH-CCCEEEEEECCHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHHHHhcCCCCeEE
Confidence            3689999999999999998776656 49999999998888888888876432 2332221 111       124799999


Q ss_pred             ecCc
Q 016265          302 DAIG  305 (392)
Q Consensus       302 d~~G  305 (392)
                      ++.|
T Consensus        82 nnAG   85 (248)
T d2d1ya1          82 NNAA   85 (248)
T ss_dssp             ECCC
T ss_pred             EeCc
Confidence            9877

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.51  E-value=9.4e-05  Score=62.05  Aligned_cols=75  Identities=20%  Similarity=0.161  Sum_probs=55.3

Q ss_pred             CCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHh-c----C-CcEEEeCCC-CccccCCCCccEEEe
Q 016265          230 FSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKS-L----G-ADLAIDYTK-DNFEDLPEKFDVVYD  302 (392)
Q Consensus       230 ~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~-~----G-~~~vi~~~~-~~~~~~~~~~D~vid  302 (392)
                      --.|++|+|+||+|++|...+..+.. .|++|+++.++.++.+.+.+ +    . .....|..+ ....+..+++|++|+
T Consensus        20 ~l~gK~vlItGasgGIG~~ia~~la~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~iDilin   98 (191)
T d1luaa1          20 SVKGKKAVVLAGTGPVGMRSAALLAG-EGAEVVLCGRKLDKAQAAADSVNKRFKVNVTAAETADDASRAEAVKGAHFVFT   98 (191)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHH-TTCEEEEEESSHHHHHHHHHHHHHHHTCCCEEEECCSHHHHHHHTTTCSEEEE
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHh-hccchhhcccchHHHHHHHHHHHhccchhhhhhhcccHHHHHHHhcCcCeeee
Confidence            34789999999999999998877766 49999999999888766532 2    2 223344433 234445678999999


Q ss_pred             cCc
Q 016265          303 AIG  305 (392)
Q Consensus       303 ~~G  305 (392)
                      +.|
T Consensus        99 ~Ag  101 (191)
T d1luaa1          99 AGA  101 (191)
T ss_dssp             CCC
T ss_pred             cCc
Confidence            987

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.44  E-value=0.00025  Score=63.43  Aligned_cols=97  Identities=12%  Similarity=0.242  Sum_probs=68.3

Q ss_pred             HHHhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHH----HhcCCcEEEeCCCCccccCCCCccE
Q 016265          224 GLERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFL----KSLGADLAIDYTKDNFEDLPEKFDV  299 (392)
Q Consensus       224 al~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~----~~~G~~~vi~~~~~~~~~~~~~~D~  299 (392)
                      .++++++++|++||=+| + |.|-.+..+|+. +|++++.++.+++..+.+    ++.|....+.....+.....+.||.
T Consensus        53 ~~~~l~l~~G~~VLDiG-C-G~G~~~~~~a~~-~g~~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~fD~  129 (291)
T d1kpia_          53 ALDKLNLEPGMTLLDIG-C-GWGSTMRHAVAE-YDVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEFDEPVDR  129 (291)
T ss_dssp             HHHTTCCCTTCEEEEET-C-TTSHHHHHHHHH-HCCEEEEEESCHHHHHHHHHHHHHSCCSSCEEEEECCGGGCCCCCSE
T ss_pred             HHHhcCCCCCCEEEEec-C-cchHHHHHHHHh-cCcceeeccchHHHHHHHHHHHHhhccchhhhhhhhcccccccccce
Confidence            34789999999999997 4 456678889988 599999999998876655    4456443333222333344567998


Q ss_pred             EEec-----Ccc-------------HHHHHHhcccCCeEEEE
Q 016265          300 VYDA-----IGQ-------------CDRAVKAIKEGGTVVAL  323 (392)
Q Consensus       300 vid~-----~G~-------------~~~~~~~l~~~G~iv~~  323 (392)
                      |+..     ++.             ++.+.++|+|||+++.-
T Consensus       130 i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~  171 (291)
T d1kpia_         130 IVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLH  171 (291)
T ss_dssp             EEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEE
T ss_pred             EeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEE
Confidence            8732     221             46788899999998754

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=97.37  E-value=0.00039  Score=60.90  Aligned_cols=94  Identities=24%  Similarity=0.416  Sum_probs=64.9

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHH-HhcCCcEEE---eCCCC-cccc-------CCCCccE
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFL-KSLGADLAI---DYTKD-NFED-------LPEKFDV  299 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~-~~~G~~~vi---~~~~~-~~~~-------~~~~~D~  299 (392)
                      .|+++||+||++++|.+.++.... .|++|+++++++++++.+ +++|....+   |..+. +..+       .-+++|+
T Consensus         5 ~gK~alITGas~GIG~aia~~la~-~Ga~V~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~iDi   83 (253)
T d1hxha_           5 QGKVALVTGGASGVGLEVVKLLLG-EGAKVAFSDINEAAGQQLAAELGERSMFVRHDVSSEADWTLVMAAVQRRLGTLNV   83 (253)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHH-TTCEEEEECSCHHHHHHHHHHHCTTEEEECCCTTCHHHHHHHHHHHHHHHCSCCE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHH-CCCEEEEEECCHHHHHHHHHHhCCCeEEEEeecCCHHHHHHHHHHHHHHhCCCCe
Confidence            588999999999999998776656 499999999988887665 467754433   22221 1111       1247899


Q ss_pred             EEecCcc----------------------------HHHHHHhcc-cCCeEEEEcCC
Q 016265          300 VYDAIGQ----------------------------CDRAVKAIK-EGGTVVALTGA  326 (392)
Q Consensus       300 vid~~G~----------------------------~~~~~~~l~-~~G~iv~~g~~  326 (392)
                      ++++.|.                            .+.++..|+ .+|+||.++..
T Consensus        84 lVnnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~G~Iv~isS~  139 (253)
T d1hxha_          84 LVNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKETGGSIINMASV  139 (253)
T ss_dssp             EEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTCEEEEEECCG
T ss_pred             EEecccccCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCceecccch
Confidence            9999871                            134555565 47999988643

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=97.35  E-value=0.00059  Score=58.49  Aligned_cols=98  Identities=17%  Similarity=0.247  Sum_probs=67.9

Q ss_pred             HHHHhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCC--c--EEEeCCCC-ccccCCCCc
Q 016265          223 EGLERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGA--D--LAIDYTKD-NFEDLPEKF  297 (392)
Q Consensus       223 ~al~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~--~--~vi~~~~~-~~~~~~~~~  297 (392)
                      ..++...+++|++||-+| +| .|..++.+|+.  +.+|+.++.+++..+.+++.-.  .  .++..+.. .+.+ ...|
T Consensus        61 ~ml~~L~l~~g~~VLdIG-~G-sGy~ta~La~l--~~~V~aiE~~~~~~~~A~~~~~~~~nv~~~~~d~~~g~~~-~~pf  135 (224)
T d1vbfa_          61 FMLDELDLHKGQKVLEIG-TG-IGYYTALIAEI--VDKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYEE-EKPY  135 (224)
T ss_dssp             HHHHHTTCCTTCEEEEEC-CT-TSHHHHHHHHH--SSEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCGG-GCCE
T ss_pred             HHHHHhhhcccceEEEec-CC-CCHHHHHHHHH--hcccccccccHHHHHHHHHHHhcccccccccCchhhcchh-hhhH
Confidence            356778999999999998 44 68888888874  6789999988888777765321  1  12222111 1121 3469


Q ss_pred             cEEEecCc---cHHHHHHhcccCCeEEEEcC
Q 016265          298 DVVYDAIG---QCDRAVKAIKEGGTVVALTG  325 (392)
Q Consensus       298 D~vid~~G---~~~~~~~~l~~~G~iv~~g~  325 (392)
                      |+++-+.+   -.+..++.|++||++|..-+
T Consensus       136 D~Iiv~~a~~~ip~~l~~qLk~GGrLV~pvg  166 (224)
T d1vbfa_         136 DRVVVWATAPTLLCKPYEQLKEGGIMILPIG  166 (224)
T ss_dssp             EEEEESSBBSSCCHHHHHTEEEEEEEEEEEC
T ss_pred             HHHHhhcchhhhhHHHHHhcCCCCEEEEEEc
Confidence            99886544   24788999999999988644

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.34  E-value=0.00024  Score=63.00  Aligned_cols=92  Identities=22%  Similarity=0.344  Sum_probs=62.0

Q ss_pred             CCeE-EEEcCCCcHHHHHHH-HHHHhcCCeEEEEeCCcccHHHH----HhcCCc-EEE--eCCCCc-cc-------cCCC
Q 016265          233 GKSI-LVLNGSGGVGSLVIQ-LAKQVFGASRVAATSSTRNLEFL----KSLGAD-LAI--DYTKDN-FE-------DLPE  295 (392)
Q Consensus       233 g~~V-lI~Ga~G~vG~~aiq-lak~~~G~~vv~~~~~~~~~~~~----~~~G~~-~vi--~~~~~~-~~-------~~~~  295 (392)
                      |.+| ||+||++|+|++.++ |++. .|++|+++.+++++++.+    ++.|.. .++  |..+.. ..       +..+
T Consensus         2 g~rVAlVTGas~GIG~a~A~~la~~-~g~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dvs~~~sv~~~~~~~~~~~g   80 (275)
T d1wmaa1           2 GIHVALVTGGNKGIGLAIVRDLCRL-FSGDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYG   80 (275)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHH-SSSEEEEEESSHHHHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCeEEEECCCCCHHHHHHHHHHHHh-CCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEEecCCHHHHHHHHHHHHHhcC
Confidence            6677 899999999998765 6765 589999999998887654    333433 222  332211 11       1124


Q ss_pred             CccEEEecCcc----------------------------HHHHHHhcccCCeEEEEcC
Q 016265          296 KFDVVYDAIGQ----------------------------CDRAVKAIKEGGTVVALTG  325 (392)
Q Consensus       296 ~~D~vid~~G~----------------------------~~~~~~~l~~~G~iv~~g~  325 (392)
                      ++|++|++.|.                            .+.++..|+++|+++.++.
T Consensus        81 ~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~g~ivnisS  138 (275)
T d1wmaa1          81 GLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVSS  138 (275)
T ss_dssp             SEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECC
T ss_pred             CcEEEEEcCCcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccc
Confidence            79999999871                            1345666788999998854

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.32  E-value=0.00035  Score=62.16  Aligned_cols=96  Identities=16%  Similarity=0.307  Sum_probs=67.5

Q ss_pred             HHhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHh----cCCcEEEeCCCCccccCCCCccEE
Q 016265          225 LERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKS----LGADLAIDYTKDNFEDLPEKFDVV  300 (392)
Q Consensus       225 l~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~----~G~~~vi~~~~~~~~~~~~~~D~v  300 (392)
                      ++++++++|++||=+| +| .|..+..+++. .|++|+.++.+++..+.+++    .|....+.....+..+..+.+|.|
T Consensus        45 ~~~l~l~~g~~VLDiG-CG-~G~~a~~~a~~-~g~~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~~~~~~fD~i  121 (280)
T d2fk8a1          45 LDKLDLKPGMTLLDIG-CG-WGTTMRRAVER-FDVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFAEPVDRI  121 (280)
T ss_dssp             HTTSCCCTTCEEEEES-CT-TSHHHHHHHHH-HCCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCCCCCSEE
T ss_pred             HHHcCCCCCCEEEEec-CC-chHHHHHHHHh-CceeEEEecchHHHHHHHHHHHHhhccccchhhhhhhhhhhccchhhh
Confidence            4678999999999998 44 35567778887 59999999999998877654    453322222223344556679988


Q ss_pred             Eec-----Cc--c----HHHHHHhcccCCeEEEE
Q 016265          301 YDA-----IG--Q----CDRAVKAIKEGGTVVAL  323 (392)
Q Consensus       301 id~-----~G--~----~~~~~~~l~~~G~iv~~  323 (392)
                      +..     ++  .    ++.+.++|+|||+++.-
T Consensus       122 ~si~~~eh~~~~~~~~~f~~i~~~LkpgG~~~i~  155 (280)
T d2fk8a1         122 VSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQ  155 (280)
T ss_dssp             EEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEE
T ss_pred             hHhhHHHHhhhhhHHHHHHHHHhccCCCceEEEE
Confidence            632     33  1    46788899999999763

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=97.32  E-value=0.00039  Score=60.45  Aligned_cols=73  Identities=23%  Similarity=0.342  Sum_probs=51.9

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHH-hcCCcE---EEeCCCCc-ccc-------CCCCccE
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLK-SLGADL---AIDYTKDN-FED-------LPEKFDV  299 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~-~~G~~~---vi~~~~~~-~~~-------~~~~~D~  299 (392)
                      +|++++|+||++++|.+.++.... .|++|+++++++++++.+. +++...   ..|..+.+ ..+       .-+++|+
T Consensus         3 ~gK~alITGas~GIG~a~a~~l~~-~G~~Vv~~~r~~~~l~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iDi   81 (243)
T d1q7ba_           3 EGKIALVTGASRGIGRAIAETLAA-RGAKVIGTATSENGAQAISDYLGANGKGLMLNVTDPASIESVLEKIRAEFGEVDI   81 (243)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHH-TTCEEEEEESSHHHHHHHHHHHGGGEEEEECCTTCHHHHHHHHHHHHHHTCSCSE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHH-cCCEEEEEeCCHHHHHHHHHHhCCCCcEEEEEecCHHHhhhhhhhhhcccCCcce
Confidence            588999999999999998776666 4999999999988877654 555332   23333321 111       1357999


Q ss_pred             EEecCc
Q 016265          300 VYDAIG  305 (392)
Q Consensus       300 vid~~G  305 (392)
                      ++++.|
T Consensus        82 lVnnAg   87 (243)
T d1q7ba_          82 LVNNAG   87 (243)
T ss_dssp             EEECCC
T ss_pred             ehhhhh
Confidence            999876

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.29  E-value=0.00071  Score=59.06  Aligned_cols=93  Identities=23%  Similarity=0.344  Sum_probs=62.9

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHH-----HhcCCcEE-E--eCCCCc-ccc-------CCC
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFL-----KSLGADLA-I--DYTKDN-FED-------LPE  295 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~-----~~~G~~~v-i--~~~~~~-~~~-------~~~  295 (392)
                      .|+++||+||++++|.+.++.+.. .|++|+++++++++++.+     +++|.... +  |..+.+ ..+       .-+
T Consensus         4 ~gK~~lITGas~GIG~aia~~la~-~Ga~V~i~~r~~~~~~~~~~~l~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   82 (251)
T d1vl8a_           4 RGRVALVTGGSRGLGFGIAQGLAE-AGCSVVVASRNLEEASEAAQKLTEKYGVETMAFRCDVSNYEEVKKLLEAVKEKFG   82 (251)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHH-CCCEEEEEECCHHHHHHHHHHHHHHhCCcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            488999999999999997776656 499999999988776533     34565432 2  333221 111       124


Q ss_pred             CccEEEecCcc----------------------------HHHHHHhcc--cCCeEEEEcC
Q 016265          296 KFDVVYDAIGQ----------------------------CDRAVKAIK--EGGTVVALTG  325 (392)
Q Consensus       296 ~~D~vid~~G~----------------------------~~~~~~~l~--~~G~iv~~g~  325 (392)
                      ++|++|++.|.                            .+.+++.|+  .+|+++.++.
T Consensus        83 ~iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Ii~i~S  142 (251)
T d1vl8a_          83 KLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLRESDNPSIINIGS  142 (251)
T ss_dssp             CCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCSSCEEEEECC
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHHhhhhhhhhhhhhhhhccccccccccccccc
Confidence            79999999871                            134566674  3689998864

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.24  E-value=0.00052  Score=59.66  Aligned_cols=73  Identities=22%  Similarity=0.261  Sum_probs=52.8

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHH-hcCCcEEE--eCCCCc-cc---cCCCCccEEEecC
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLK-SLGADLAI--DYTKDN-FE---DLPEKFDVVYDAI  304 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~-~~G~~~vi--~~~~~~-~~---~~~~~~D~vid~~  304 (392)
                      .|+++||+||++++|.+.++.... .|++|+++++++++++.+. +++....+  |..+.+ .+   +.-+++|+++++.
T Consensus         6 ~GK~~lITGas~GIG~aia~~la~-~G~~V~~~~r~~~~l~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~g~iDilVnnA   84 (244)
T d1pr9a_           6 AGRRVLVTGAGKGIGRGTVQALHA-TGARVVAVSRTQADLDSLVRECPGIEPVCVDLGDWEATERALGSVGPVDLLVNNA   84 (244)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHHSTTCEEEECCTTCHHHHHHHHTTCCCCCEEEECC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHH-cCCEEEEEECCHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHHHHhCCceEEEecc
Confidence            689999999999999998877766 4999999999988877664 55433333  333321 11   1235799999987


Q ss_pred             c
Q 016265          305 G  305 (392)
Q Consensus       305 G  305 (392)
                      |
T Consensus        85 g   85 (244)
T d1pr9a_          85 A   85 (244)
T ss_dssp             C
T ss_pred             c
Confidence            6

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=97.23  E-value=0.00067  Score=59.73  Aligned_cols=120  Identities=13%  Similarity=0.132  Sum_probs=80.1

Q ss_pred             HHHHHHhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhc-CCeEEEEeCCcccHHHHH----hcCCcEEEeCCCCcccc--C
Q 016265          221 AYEGLERTGFSAGKSILVLNGSGGVGSLVIQLAKQVF-GASRVAATSSTRNLEFLK----SLGADLAIDYTKDNFED--L  293 (392)
Q Consensus       221 a~~al~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~-G~~vv~~~~~~~~~~~~~----~~G~~~vi~~~~~~~~~--~  293 (392)
                      +-+.+..+++++|++||=.| +|. |.+++.+|+.+. +++++.++.+++..+.++    ++|....+.....+...  .
T Consensus        92 ~~~Ii~~l~i~pG~~VLDiG-~Gs-G~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d~~~~~~  169 (266)
T d1o54a_          92 SSFIAMMLDVKEGDRIIDTG-VGS-GAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFD  169 (266)
T ss_dssp             HHHHHHHTTCCTTCEEEEEC-CTT-SHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCCS
T ss_pred             HHHHHHhhCCCCCCEEEECC-CCC-CHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEecccccccc
Confidence            33345788999999999997 554 888888998752 368999999998887764    45643222211112211  2


Q ss_pred             CCCccEEEecCc----cHHHHHHhcccCCeEEEEcCCCCCCceEEEEeecHHHHHHHHHHHHCCCc
Q 016265          294 PEKFDVVYDAIG----QCDRAVKAIKEGGTVVALTGAVTPPGFRFVVTSNGEVLKKLNPYLESGKV  355 (392)
Q Consensus       294 ~~~~D~vid~~G----~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~l  355 (392)
                      ...+|.|+--..    .++.+.++|+|||+++.+..             ..+.+.++++.+++..+
T Consensus       170 ~~~~D~V~~d~p~p~~~l~~~~~~LKpGG~lv~~~P-------------~~~Qv~~~~~~l~~~gF  222 (266)
T d1o54a_         170 EKDVDALFLDVPDPWNYIDKCWEALKGGGRFATVCP-------------TTNQVQETLKKLQELPF  222 (266)
T ss_dssp             CCSEEEEEECCSCGGGTHHHHHHHEEEEEEEEEEES-------------SHHHHHHHHHHHHHSSE
T ss_pred             ccceeeeEecCCCHHHHHHHHHhhcCCCCEEEEEeC-------------cccHHHHHHHHHHHCCc
Confidence            346888776554    36899999999999986632             33556666777765444

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=97.21  E-value=0.00055  Score=59.90  Aligned_cols=73  Identities=22%  Similarity=0.342  Sum_probs=51.6

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHH-HhcCCcEE---EeCCCC-ccccC-------CCCccE
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFL-KSLGADLA---IDYTKD-NFEDL-------PEKFDV  299 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~-~~~G~~~v---i~~~~~-~~~~~-------~~~~D~  299 (392)
                      +|+++||+||++++|.+.++.... .|++|+++++++++++.+ +++|....   .|..++ +..+.       -+++|+
T Consensus         4 ~gK~alVTGas~GIG~aia~~la~-~Ga~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iDi   82 (254)
T d1hdca_           4 SGKTVIITGGARGLGAEAARQAVA-AGARVVLADVLDEEGAATARELGDAARYQHLDVTIEEDWQRVVAYAREEFGSVDG   82 (254)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHTTGGGEEEEECCTTCHHHHHHHHHHHHHHHSCCCE
T ss_pred             CCCEEEEeCcCCHHHHHHHHHHHH-CCCEEEEEECCHHHHHHHHHHhCCceEEEEcccCCHHHHHHHHHHHHHHcCCccE
Confidence            589999999999999997776666 499999999988887655 46664322   232222 11111       247999


Q ss_pred             EEecCc
Q 016265          300 VYDAIG  305 (392)
Q Consensus       300 vid~~G  305 (392)
                      +|++.|
T Consensus        83 lVnnAg   88 (254)
T d1hdca_          83 LVNNAG   88 (254)
T ss_dssp             EEECCC
T ss_pred             EEecCc
Confidence            999987

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=97.21  E-value=0.00045  Score=60.26  Aligned_cols=96  Identities=16%  Similarity=0.269  Sum_probs=64.6

Q ss_pred             HHhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhc-CCeEEEEeCCcccHHHHHh----cC-CcEEEeCCCCccccC--CCC
Q 016265          225 LERTGFSAGKSILVLNGSGGVGSLVIQLAKQVF-GASRVAATSSTRNLEFLKS----LG-ADLAIDYTKDNFEDL--PEK  296 (392)
Q Consensus       225 l~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~-G~~vv~~~~~~~~~~~~~~----~G-~~~vi~~~~~~~~~~--~~~  296 (392)
                      +..++++||++||=.| +|. |.++..+|+.+. +.+++.++.+++..+.+++    ++ .+. +.....++.+.  .+.
T Consensus        78 i~~l~i~pG~rVLEiG-~Gs-G~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~n-v~~~~~Di~~~~~~~~  154 (250)
T d1yb2a1          78 IMRCGLRPGMDILEVG-VGS-GNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGN-VRTSRSDIADFISDQM  154 (250)
T ss_dssp             ---CCCCTTCEEEEEC-CTT-SHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTT-EEEECSCTTTCCCSCC
T ss_pred             HHHcCCCCcCEEEEee-eeC-cHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCc-eEEEEeeeecccccce
Confidence            4578899999999997 444 788888998752 3478889999988887754    33 222 22111222221  346


Q ss_pred             ccEEEecCc----cHHHHHHhcccCCeEEEE
Q 016265          297 FDVVYDAIG----QCDRAVKAIKEGGTVVAL  323 (392)
Q Consensus       297 ~D~vid~~G----~~~~~~~~l~~~G~iv~~  323 (392)
                      ||.||--..    .++.+.++|+|||+++.+
T Consensus       155 fD~V~ld~p~p~~~l~~~~~~LKpGG~lv~~  185 (250)
T d1yb2a1         155 YDAVIADIPDPWNHVQKIASMMKPGSVATFY  185 (250)
T ss_dssp             EEEEEECCSCGGGSHHHHHHTEEEEEEEEEE
T ss_pred             eeeeeecCCchHHHHHHHHHhcCCCceEEEE
Confidence            998874443    468999999999999876

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=97.19  E-value=0.00079  Score=59.05  Aligned_cols=73  Identities=21%  Similarity=0.257  Sum_probs=50.4

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHH----HhcCCcEE-E--eCCCCc-ccc-------CCCC
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFL----KSLGADLA-I--DYTKDN-FED-------LPEK  296 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~----~~~G~~~v-i--~~~~~~-~~~-------~~~~  296 (392)
                      .|+++||+||++++|++.+..... .|++|+++++++++++.+    ++.|.+.. +  |..+.+ +.+       .-++
T Consensus         4 ~gK~alITGas~GIG~aia~~la~-~Ga~V~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   82 (260)
T d1zema1           4 NGKVCLVTGAGGNIGLATALRLAE-EGTAIALLDMNREALEKAEASVREKGVEARSYVCDVTSEEAVIGTVDSVVRDFGK   82 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHHTTTSCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHH-CCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence            589999999999999987766555 499999999988877654    34454432 2  332221 111       1247


Q ss_pred             ccEEEecCc
Q 016265          297 FDVVYDAIG  305 (392)
Q Consensus       297 ~D~vid~~G  305 (392)
                      +|+++++.|
T Consensus        83 iDilVnnaG   91 (260)
T d1zema1          83 IDFLFNNAG   91 (260)
T ss_dssp             CCEEEECCC
T ss_pred             CCeehhhhc
Confidence            999999876

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=97.16  E-value=0.0012  Score=57.74  Aligned_cols=73  Identities=22%  Similarity=0.373  Sum_probs=50.8

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHH----HhcCCcEE---EeCCCCc-cc--------cCCC
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFL----KSLGADLA---IDYTKDN-FE--------DLPE  295 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~----~~~G~~~v---i~~~~~~-~~--------~~~~  295 (392)
                      .|+++||+||++++|.+.++.... .|++|+++++++++++.+    ++.|....   .|..+.+ ..        +...
T Consensus         7 ~GK~alITGas~GIG~aia~~la~-~Ga~V~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~~~   85 (259)
T d2ae2a_           7 EGCTALVTGGSRGIGYGIVEELAS-LGASVYTCSRNQKELNDCLTQWRSKGFKVEASVCDLSSRSERQELMNTVANHFHG   85 (259)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHTTT
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHH-CCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEeeCCCHHHHHHHHHHHHHHhCC
Confidence            689999999999999997776656 499999999988877654    33454322   2332221 11        1133


Q ss_pred             CccEEEecCc
Q 016265          296 KFDVVYDAIG  305 (392)
Q Consensus       296 ~~D~vid~~G  305 (392)
                      .+|+++++.|
T Consensus        86 ~idilvnnAG   95 (259)
T d2ae2a_          86 KLNILVNNAG   95 (259)
T ss_dssp             CCCEEEECCC
T ss_pred             CceEEEECCc
Confidence            6999999987

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.14  E-value=0.00077  Score=58.48  Aligned_cols=73  Identities=21%  Similarity=0.196  Sum_probs=51.7

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHH-hcCCcEEE--eCCCCc-cc---cCCCCccEEEecC
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLK-SLGADLAI--DYTKDN-FE---DLPEKFDVVYDAI  304 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~-~~G~~~vi--~~~~~~-~~---~~~~~~D~vid~~  304 (392)
                      .|+++||+||++++|.+.++.... .|++|+++++++++++.+. +++....+  |..+.+ .+   +.-+++|+++++.
T Consensus         4 ~GK~alITGas~GIG~aia~~la~-~Ga~V~~~~r~~~~l~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~g~iDilVnnA   82 (242)
T d1cyda_           4 SGLRALVTGAGKGIGRDTVKALHA-SGAKVVAVTRTNSDLVSLAKECPGIEPVCVDLGDWDATEKALGGIGPVDLLVNNA   82 (242)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHHSTTCEEEECCTTCHHHHHHHHTTCCCCSEEEECC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHH-CCCEEEEEECCHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHHHHcCCCeEEEECC
Confidence            589999999999999998776656 4999999999988876654 45433223  333221 11   1135799999997


Q ss_pred             c
Q 016265          305 G  305 (392)
Q Consensus       305 G  305 (392)
                      |
T Consensus        83 g   83 (242)
T d1cyda_          83 A   83 (242)
T ss_dssp             C
T ss_pred             c
Confidence            7

>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.14  E-value=0.00052  Score=59.28  Aligned_cols=37  Identities=19%  Similarity=0.249  Sum_probs=31.8

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcc
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTR  269 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~  269 (392)
                      +|++|||+||++++|.+.++.... .|++|++++..+.
T Consensus         1 egK~vlITGas~GIG~a~a~~l~~-~G~~V~~~~~~~~   37 (236)
T d1dhra_           1 EARRVLVYGGRGALGSRCVQAFRA-RNWWVASIDVVEN   37 (236)
T ss_dssp             CCCEEEEETTTSHHHHHHHHHHHT-TTCEEEEEESSCC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHH-CCCEEEEEeCCcc
Confidence            488999999999999999888877 5999998876544

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=97.12  E-value=0.00064  Score=59.03  Aligned_cols=73  Identities=23%  Similarity=0.308  Sum_probs=52.3

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHH-hcCCcEE-EeCCCCc-ccc-------CCCCccEEE
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLK-SLGADLA-IDYTKDN-FED-------LPEKFDVVY  301 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~-~~G~~~v-i~~~~~~-~~~-------~~~~~D~vi  301 (392)
                      .|+++||+||++++|.+.++.... .|++|+++++++++++.+. ++++..+ .|..+.+ ..+       .-+++|++|
T Consensus         4 ~gK~~lITGas~GIG~aia~~l~~-~G~~V~~~~r~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iDilV   82 (242)
T d1ulsa_           4 KDKAVLITGAAHGIGRATLELFAK-EGARLVACDIEEGPLREAAEAVGAHPVVMDVADPASVERGFAEALAHLGRLDGVV   82 (242)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHTTTCEEEECCTTCHHHHHHHHHHHHHHHSSCCEEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHH-CCCEEEEEECCHHHHHHHHHHcCCeEEEEecCCHHHHHHHHHHHHHhcCCceEEE
Confidence            488999999999999998877766 4999999999988877664 4554322 2333221 111       124799999


Q ss_pred             ecCc
Q 016265          302 DAIG  305 (392)
Q Consensus       302 d~~G  305 (392)
                      ++.|
T Consensus        83 nnAG   86 (242)
T d1ulsa_          83 HYAG   86 (242)
T ss_dssp             ECCC
T ss_pred             ECCc
Confidence            9977

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.12  E-value=0.0012  Score=56.40  Aligned_cols=101  Identities=14%  Similarity=0.066  Sum_probs=65.3

Q ss_pred             HHHHHhc--CCCCCCeEEEEcCCCcHHHHHHHHHHHhc-CCeEEEEeCCcccHHHHH----hcCC-----c--EEEeCCC
Q 016265          222 YEGLERT--GFSAGKSILVLNGSGGVGSLVIQLAKQVF-GASRVAATSSTRNLEFLK----SLGA-----D--LAIDYTK  287 (392)
Q Consensus       222 ~~al~~~--~~~~g~~VlI~Ga~G~vG~~aiqlak~~~-G~~vv~~~~~~~~~~~~~----~~G~-----~--~vi~~~~  287 (392)
                      ...++..  .+++|++||-+| + |.|..++.+|+... ..+|+.++.+++-.+.++    +.+.     +  .+...+.
T Consensus        64 a~~le~L~~~l~~g~~VLdiG-~-GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~  141 (224)
T d1i1na_          64 AYALELLFDQLHEGAKALDVG-S-GSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDG  141 (224)
T ss_dssp             HHHHHHTTTTSCTTCEEEEET-C-TTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCG
T ss_pred             HHHHHHHhhccCCCCeEEEec-C-CCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeec
Confidence            3455543  789999999997 4 45888888888752 247888888887666553    2222     1  1111111


Q ss_pred             CccccCCCCccEEEecCc---cHHHHHHhcccCCeEEEEc
Q 016265          288 DNFEDLPEKFDVVYDAIG---QCDRAVKAIKEGGTVVALT  324 (392)
Q Consensus       288 ~~~~~~~~~~D~vid~~G---~~~~~~~~l~~~G~iv~~g  324 (392)
                      .........||+|+.+..   ..+..++.|++||++|..-
T Consensus       142 ~~~~~~~~~fD~I~~~~~~~~ip~~l~~~LkpGG~LV~pv  181 (224)
T d1i1na_         142 RMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILPV  181 (224)
T ss_dssp             GGCCGGGCCEEEEEECSBBSSCCHHHHHTEEEEEEEEEEE
T ss_pred             ccccchhhhhhhhhhhcchhhcCHHHHhhcCCCcEEEEEE
Confidence            111112346999997755   2478999999999998753

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.11  E-value=0.0012  Score=57.82  Aligned_cols=73  Identities=22%  Similarity=0.358  Sum_probs=50.5

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHH----hcCCcE-E--EeCCCCc-ccc--------CCC
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLK----SLGADL-A--IDYTKDN-FED--------LPE  295 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~----~~G~~~-v--i~~~~~~-~~~--------~~~  295 (392)
                      +|+++||+||++++|.+.++.... .|++|+++++++++++.+.    +.+... .  .|..+.+ ..+        ..+
T Consensus         7 kgK~alVTGas~GIG~aiA~~la~-~Ga~V~~~~r~~~~l~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~~g   85 (259)
T d1xq1a_           7 KAKTVLVTGGTKGIGHAIVEEFAG-FGAVIHTCARNEYELNECLSKWQKKGFQVTGSVCDASLRPEREKLMQTVSSMFGG   85 (259)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHTT
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHH-CCCEEEEEECCHHHHHHHHHHHHhcCCceEEEeccCCCHHHHHHHHHHHHHHhCC
Confidence            589999999999999997777666 4999999999988776542    334322 2  2333221 111        134


Q ss_pred             CccEEEecCc
Q 016265          296 KFDVVYDAIG  305 (392)
Q Consensus       296 ~~D~vid~~G  305 (392)
                      .+|+++++.|
T Consensus        86 ~idilvnnAG   95 (259)
T d1xq1a_          86 KLDILINNLG   95 (259)
T ss_dssp             CCSEEEEECC
T ss_pred             Cccccccccc
Confidence            5899999987

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=97.11  E-value=0.0013  Score=57.43  Aligned_cols=89  Identities=19%  Similarity=0.260  Sum_probs=61.2

Q ss_pred             CCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHh----cCCcE-EEeCCCCccccCCCCccEEEecC
Q 016265          230 FSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKS----LGADL-AIDYTKDNFEDLPEKFDVVYDAI  304 (392)
Q Consensus       230 ~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~----~G~~~-vi~~~~~~~~~~~~~~D~vid~~  304 (392)
                      .++|++||=.| +|. |.+++.+++  .|++|+.++.++.-.+.+++    .|... ++..+..+. ...+.||+|+...
T Consensus       118 ~~~g~~VLDiG-cGs-G~l~i~aa~--~g~~V~gvDis~~av~~A~~na~~n~~~~~~~~~d~~~~-~~~~~fD~V~ani  192 (254)
T d2nxca1         118 LRPGDKVLDLG-TGS-GVLAIAAEK--LGGKALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAA-LPFGPFDLLVANL  192 (254)
T ss_dssp             CCTTCEEEEET-CTT-SHHHHHHHH--TTCEEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHHH-GGGCCEEEEEEEC
T ss_pred             cCccCEEEEcc-cch-hHHHHHHHh--cCCEEEEEECChHHHHHHHHHHHHcCCceeEEecccccc-ccccccchhhhcc
Confidence            67999999997 554 778887776  38999999999988877753    45432 332221111 1135799998664


Q ss_pred             c-c-----HHHHHHhcccCCeEEEE
Q 016265          305 G-Q-----CDRAVKAIKEGGTVVAL  323 (392)
Q Consensus       305 G-~-----~~~~~~~l~~~G~iv~~  323 (392)
                      . .     +..+.++|+|||+++.-
T Consensus       193 ~~~~l~~l~~~~~~~LkpGG~lilS  217 (254)
T d2nxca1         193 YAELHAALAPRYREALVPGGRALLT  217 (254)
T ss_dssp             CHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ccccHHHHHHHHHHhcCCCcEEEEE
Confidence            3 1     36788899999999864

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=97.09  E-value=0.00067  Score=58.28  Aligned_cols=90  Identities=17%  Similarity=0.239  Sum_probs=68.6

Q ss_pred             CCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCCccccCCCCccEEEecCc----
Q 016265          230 FSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFEDLPEKFDVVYDAIG----  305 (392)
Q Consensus       230 ~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~~~~~~~D~vid~~G----  305 (392)
                      ..++.+||=+| +| .|..+..+++.  |++++.++.+++.++.+++.+....+..+..+.....+.+|+|+....    
T Consensus        40 ~~~~~~vLDiG-cG-~G~~~~~l~~~--~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~l~~~~~~fD~ii~~~~~~~~  115 (246)
T d2avna1          40 LKNPCRVLDLG-GG-TGKWSLFLQER--GFEVVLVDPSKEMLEVAREKGVKNVVEAKAEDLPFPSGAFEAVLALGDVLSY  115 (246)
T ss_dssp             CCSCCEEEEET-CT-TCHHHHHHHTT--TCEEEEEESCHHHHHHHHHHTCSCEEECCTTSCCSCTTCEEEEEECSSHHHH
T ss_pred             cCCCCEEEEEC-CC-Cchhccccccc--ceEEEEeecccccccccccccccccccccccccccccccccceeeecchhhh
Confidence            55778898887 55 69999999873  899999999999999999888776666554444333467999986533    


Q ss_pred             --c----HHHHHHhcccCCeEEEE
Q 016265          306 --Q----CDRAVKAIKEGGTVVAL  323 (392)
Q Consensus       306 --~----~~~~~~~l~~~G~iv~~  323 (392)
                        .    +..+.++|+|||.++..
T Consensus       116 ~~d~~~~l~~i~r~Lk~gG~~ii~  139 (246)
T d2avna1         116 VENKDKAFSEIRRVLVPDGLLIAT  139 (246)
T ss_dssp             CSCHHHHHHHHHHHEEEEEEEEEE
T ss_pred             hhhHHHHHHHHHhhcCcCcEEEEE
Confidence              1    46778899999998753

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=97.04  E-value=0.0012  Score=57.59  Aligned_cols=73  Identities=16%  Similarity=0.313  Sum_probs=50.4

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHH----HhcCCcEE-E--eCCCCc-cc-------cCCCC
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFL----KSLGADLA-I--DYTKDN-FE-------DLPEK  296 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~----~~~G~~~v-i--~~~~~~-~~-------~~~~~  296 (392)
                      .++.+||+||++++|.+.+..... .|++|+++++++++++.+    ++.|.... +  |..+.+ ..       +.-++
T Consensus         9 enKvalITGas~GIG~a~a~~la~-~Ga~V~~~~r~~~~l~~~~~~l~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~~g~   87 (251)
T d2c07a1           9 ENKVALVTGAGRGIGREIAKMLAK-SVSHVICISRTQKSCDSVVDEIKSFGYESSGYAGDVSKKEEISEVINKILTEHKN   87 (251)
T ss_dssp             SSCEEEEESTTSHHHHHHHHHHTT-TSSEEEEEESSHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHCSC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHH-cCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHhcCC
Confidence            478899999999999997776655 499999999988876654    44554322 2  332221 11       11357


Q ss_pred             ccEEEecCc
Q 016265          297 FDVVYDAIG  305 (392)
Q Consensus       297 ~D~vid~~G  305 (392)
                      +|+++++.|
T Consensus        88 iDilvnnag   96 (251)
T d2c07a1          88 VDILVNNAG   96 (251)
T ss_dssp             CCEEEECCC
T ss_pred             ceeeeeccc
Confidence            999999876

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=97.04  E-value=0.0011  Score=53.90  Aligned_cols=74  Identities=16%  Similarity=0.253  Sum_probs=53.4

Q ss_pred             HHHHhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCC-eEEEEeCCcccHHHHH-hcCCcEEEeCCCCccccCCCCccEE
Q 016265          223 EGLERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGA-SRVAATSSTRNLEFLK-SLGADLAIDYTKDNFEDLPEKFDVV  300 (392)
Q Consensus       223 ~al~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~-~vv~~~~~~~~~~~~~-~~G~~~vi~~~~~~~~~~~~~~D~v  300 (392)
                      ..|+..++.++.+|+|+| +|+.+.+++..++.. |+ ++.++.++.+|.+.+. .++... ++..      ....+|++
T Consensus         7 ~~l~~~~~~~~~~vlIlG-aGGaarai~~aL~~~-g~~~I~I~nR~~~ka~~L~~~~~~~~-~~~~------~~~~~Dli   77 (167)
T d1npya1           7 KLIEKYHLNKNAKVIVHG-SGGMAKAVVAAFKNS-GFEKLKIYARNVKTGQYLAALYGYAY-INSL------ENQQADIL   77 (167)
T ss_dssp             HHHHHTTCCTTSCEEEEC-SSTTHHHHHHHHHHT-TCCCEEEECSCHHHHHHHHHHHTCEE-ESCC------TTCCCSEE
T ss_pred             HHHHHcCCCCCCeEEEEC-CCHHHHHHHHHHHHC-CCCEEEEecccHHHHHHHHHhhhhhh-hhcc------cccchhhh
Confidence            355677777889999998 899999999888884 87 5667778888876664 455433 2211      12368999


Q ss_pred             EecCc
Q 016265          301 YDAIG  305 (392)
Q Consensus       301 id~~G  305 (392)
                      |+|+.
T Consensus        78 INaTp   82 (167)
T d1npya1          78 VNVTS   82 (167)
T ss_dssp             EECSS
T ss_pred             eeccc
Confidence            99964

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=97.04  E-value=0.0013  Score=57.30  Aligned_cols=73  Identities=21%  Similarity=0.203  Sum_probs=48.0

Q ss_pred             CCCeEEEEcCCC--cHHHHHHHHHHHhcCCeEEEEeCCcccHHHHH----hcCCcEEEeCCCCcc---cc-------CCC
Q 016265          232 AGKSILVLNGSG--GVGSLVIQLAKQVFGASRVAATSSTRNLEFLK----SLGADLAIDYTKDNF---ED-------LPE  295 (392)
Q Consensus       232 ~g~~VlI~Ga~G--~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~----~~G~~~vi~~~~~~~---~~-------~~~  295 (392)
                      .|+++||+||+|  ++|.+.++.... .|++|++..++++..+.++    ..|....+..+-.+.   .+       .-+
T Consensus         7 ~gK~alITGas~~~GIG~aiA~~la~-~Ga~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g   85 (256)
T d1ulua_           7 SGKKALVMGVTNQRSLGFAIAAKLKE-AGAEVALSYQAERLRPEAEKLAEALGGALLFRADVTQDEELDALFAGVKEAFG   85 (256)
T ss_dssp             TTCEEEEESCCCSSSHHHHHHHHHHH-TTCEEEEEESSGGGHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHH-CCCEEEEEeCcHHHHHHHHHhhhccCcccccccccCCHHHHHHHHHHHHHhcC
Confidence            589999999887  899987766555 4999988888776554443    334444443322221   11       124


Q ss_pred             CccEEEecCc
Q 016265          296 KFDVVYDAIG  305 (392)
Q Consensus       296 ~~D~vid~~G  305 (392)
                      ++|+++++.|
T Consensus        86 ~iDilVnnag   95 (256)
T d1ulua_          86 GLDYLVHAIA   95 (256)
T ss_dssp             SEEEEEECCC
T ss_pred             CceEEEeccc
Confidence            7999998875

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.03  E-value=0.0008  Score=58.67  Aligned_cols=73  Identities=25%  Similarity=0.368  Sum_probs=51.8

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHh-cCCcEEE--eCCCCc-ccc-------CCCCccEE
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKS-LGADLAI--DYTKDN-FED-------LPEKFDVV  300 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~-~G~~~vi--~~~~~~-~~~-------~~~~~D~v  300 (392)
                      .|+++||+||++++|.+.++.... .|++|+++++++++++.+.+ ++....+  |..+.+ ..+       .-+++|++
T Consensus         5 ~GK~alITGas~GIG~aia~~la~-~Ga~V~i~~r~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~iDil   83 (250)
T d1ydea1           5 AGKVVVVTGGGRGIGAGIVRAFVN-SGARVVICDKDESGGRALEQELPGAVFILCDVTQEDDVKTLVSETIRRFGRLDCV   83 (250)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHHCTTEEEEECCTTSHHHHHHHHHHHHHHHSCCCEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHH-CCCEEEEEECCHHHHHHHHHhcCCCeEEEccCCCHHHHHHHHHHHHHhcCCCCEE
Confidence            589999999999999998876656 49999999999988887764 4432332  222211 111       12478999


Q ss_pred             EecCc
Q 016265          301 YDAIG  305 (392)
Q Consensus       301 id~~G  305 (392)
                      +++.|
T Consensus        84 VnnAG   88 (250)
T d1ydea1          84 VNNAG   88 (250)
T ss_dssp             EECCC
T ss_pred             Eeccc
Confidence            99876

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=97.03  E-value=0.0016  Score=57.31  Aligned_cols=93  Identities=24%  Similarity=0.308  Sum_probs=62.7

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCC-cccHH----HHHhcCCcEEEe-CCCCccc---c-------CCC
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSS-TRNLE----FLKSLGADLAID-YTKDNFE---D-------LPE  295 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~-~~~~~----~~~~~G~~~vi~-~~~~~~~---~-------~~~  295 (392)
                      .|+++||+||++++|.+.++.... .|++|++.+++ +++++    .+++.|.+.... .+-.+.+   +       ..+
T Consensus        17 ~gK~~lITGas~GIG~aia~~la~-~Ga~Vvi~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~~~g   95 (272)
T d1g0oa_          17 EGKVALVTGAGRGIGREMAMELGR-RGCKVIVNYANSTESAEEVVAAIKKNGSDAACVKANVGVVEDIVRMFEEAVKIFG   95 (272)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHH-TTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHH-cCCEEEEEeCCchHHHHHHHHHHHhhCCceeeEeCCCCCHHHHHHHHHHHHHHhC
Confidence            489999999999999998877766 49999998765 34333    335566554332 2221111   1       124


Q ss_pred             CccEEEecCcc----------------------------HHHHHHhcccCCeEEEEcC
Q 016265          296 KFDVVYDAIGQ----------------------------CDRAVKAIKEGGTVVALTG  325 (392)
Q Consensus       296 ~~D~vid~~G~----------------------------~~~~~~~l~~~G~iv~~g~  325 (392)
                      ++|+++++.|.                            .+.++..|..+|+++.++.
T Consensus        96 ~idilV~nag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~g~~i~i~s  153 (272)
T d1g0oa_          96 KLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMGS  153 (272)
T ss_dssp             CCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEECC
T ss_pred             CCCccccccccchhhhhhhhhhhHHHHHhhhccceeeeeccccccccccccccccccc
Confidence            78999988761                            2456677888999888853

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=97.02  E-value=0.00036  Score=60.57  Aligned_cols=94  Identities=22%  Similarity=0.240  Sum_probs=65.1

Q ss_pred             HhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHh----cCCcE---EEeCCCCccccCCCCcc
Q 016265          226 ERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKS----LGADL---AIDYTKDNFEDLPEKFD  298 (392)
Q Consensus       226 ~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~----~G~~~---vi~~~~~~~~~~~~~~D  298 (392)
                      ..+++++|++||=+| + |.|..+..+++. .|++++.++.++.-.+.+++    .|...   ++..+-.++ ...+.||
T Consensus        27 ~~~~l~pg~~VLDiG-C-G~G~~~~~la~~-~~~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~~~-~~~~~fD  102 (245)
T d1nkva_          27 RVLRMKPGTRILDLG-S-GSGEMLCTWARD-HGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGY-VANEKCD  102 (245)
T ss_dssp             HHTCCCTTCEEEEET-C-TTCHHHHHHHHH-TCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTC-CCSSCEE
T ss_pred             HHcCCCCCCEEEEEc-C-CCCHHHHHHHHh-cCCEEEEEecccchhhHHHHHHHHhhccccchhhhhHHhhc-cccCcee
Confidence            678999999999997 3 446778888887 59999999999887766644    46432   222111121 1235799


Q ss_pred             EEEecCc---------cHHHHHHhcccCCeEEEE
Q 016265          299 VVYDAIG---------QCDRAVKAIKEGGTVVAL  323 (392)
Q Consensus       299 ~vid~~G---------~~~~~~~~l~~~G~iv~~  323 (392)
                      +|+-.-.         .+..+.+.|+|||+++..
T Consensus       103 ~v~~~~~~~~~~d~~~~l~~~~r~LkPGG~l~i~  136 (245)
T d1nkva_         103 VAACVGATWIAGGFAGAEELLAQSLKPGGIMLIG  136 (245)
T ss_dssp             EEEEESCGGGTSSSHHHHHHHTTSEEEEEEEEEE
T ss_pred             EEEEEehhhccCCHHHHHHHHHHHcCcCcEEEEE
Confidence            8885321         257788899999998764

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.01  E-value=0.0015  Score=56.90  Aligned_cols=73  Identities=19%  Similarity=0.204  Sum_probs=50.3

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHH-hc----C-CcE-E--EeCCCCc-ccc-------CC
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLK-SL----G-ADL-A--IDYTKDN-FED-------LP  294 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~-~~----G-~~~-v--i~~~~~~-~~~-------~~  294 (392)
                      .|+++||+||++++|.+.++.... .|++|++++++.++++.+. ++    + ... .  .|..+.. +.+       .-
T Consensus         2 ~GKvalITGas~GIG~aia~~la~-~Ga~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   80 (254)
T d2gdza1           2 NGKVALVTGAAQGIGRAFAEALLL-KGAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDHF   80 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHH-CCCEEEEEECCHHHHHHHHHHHHHhcCCCcEEEEEeecCCHHHHHHHHHHHHHHc
Confidence            589999999999999998877666 4999999999988876553 22    1 111 1  2333321 111       12


Q ss_pred             CCccEEEecCc
Q 016265          295 EKFDVVYDAIG  305 (392)
Q Consensus       295 ~~~D~vid~~G  305 (392)
                      +++|+++++.|
T Consensus        81 G~iDilVnnAg   91 (254)
T d2gdza1          81 GRLDILVNNAG   91 (254)
T ss_dssp             SCCCEEEECCC
T ss_pred             CCcCeeccccc
Confidence            47999999987

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=96.98  E-value=0.0011  Score=58.04  Aligned_cols=94  Identities=28%  Similarity=0.321  Sum_probs=62.2

Q ss_pred             CCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeC-CcccHH----HHHhcCCcEE-E--eCCCC-cccc-------C
Q 016265          230 FSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATS-STRNLE----FLKSLGADLA-I--DYTKD-NFED-------L  293 (392)
Q Consensus       230 ~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~-~~~~~~----~~~~~G~~~v-i--~~~~~-~~~~-------~  293 (392)
                      .-.|++|||+||++++|.+.++.... .|++|++..+ +++..+    .+++.|.+.. +  |..+. ...+       .
T Consensus         3 ~L~GK~alITGas~GIG~aia~~la~-~G~~Vvi~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~~   81 (259)
T d1ja9a_           3 PLAGKVALTTGAGRGIGRGIAIELGR-RGASVVVNYGSSSKAAEEVVAELKKLGAQGVAIQADISKPSEVVALFDKAVSH   81 (259)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHH-TTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHH-cCCEEEEEcCCChHHHHHHHHHHHHcCCCceEecCCCCCHHHHHHHHHHHHHH
Confidence            34699999999999999998876656 4999998765 444333    3455675533 2  22221 1111       1


Q ss_pred             CCCccEEEecCcc----------------------------HHHHHHhcccCCeEEEEc
Q 016265          294 PEKFDVVYDAIGQ----------------------------CDRAVKAIKEGGTVVALT  324 (392)
Q Consensus       294 ~~~~D~vid~~G~----------------------------~~~~~~~l~~~G~iv~~g  324 (392)
                      .+++|+++++.|.                            .+.++..++.+|+++.+.
T Consensus        82 ~g~idilinnag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~g~~iii~  140 (259)
T d1ja9a_          82 FGGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRGGRIILTS  140 (259)
T ss_dssp             HSCEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEEEEEEEEC
T ss_pred             cCCCcEEEeccccccccccccchHHHHHHHHhhccceeeeehhhhhhhhhcCCcccccc
Confidence            2469999999871                            245677788888887774

>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dehydrogenase/reductase SDR family member 6, DHRS6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.97  E-value=0.00056  Score=59.48  Aligned_cols=73  Identities=23%  Similarity=0.315  Sum_probs=52.3

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEE--eCCCCccc----cCCCCccEEEecCc
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAI--DYTKDNFE----DLPEKFDVVYDAIG  305 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi--~~~~~~~~----~~~~~~D~vid~~G  305 (392)
                      .|+++||+||++++|.+.++.... .|++|+++++++++++.+.+.......  |.......    +...++|+++++.|
T Consensus         5 ~gK~alITGas~GIG~aia~~la~-~G~~Vi~~~r~~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~id~lVn~ag   83 (245)
T d2ag5a1           5 DGKVIILTAAAQGIGQAAALAFAR-EGAKVIATDINESKLQELEKYPGIQTRVLDVTKKKQIDQFANEVERLDVLFNVAG   83 (245)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHH-TTCEEEEEESCHHHHGGGGGSTTEEEEECCTTCHHHHHHHHHHCSCCSEEEECCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHH-cCCEEEEEeCCHHHHHHHHhccCCceeeeeccccccccccccccccceeEEeccc
Confidence            689999999999999998887766 499999999998888777654332222  22222111    12357899999877

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.96  E-value=0.0021  Score=56.10  Aligned_cols=73  Identities=26%  Similarity=0.357  Sum_probs=50.4

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHH----HhcCC-cEE--E--eCCCC-cccc-------CC
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFL----KSLGA-DLA--I--DYTKD-NFED-------LP  294 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~----~~~G~-~~v--i--~~~~~-~~~~-------~~  294 (392)
                      +|+++||+||++++|.+.+..+.. .|++|+++.+++++++.+    ++.|. ..+  +  |-.++ +..+       .-
T Consensus         9 k~Kv~lITGas~GIG~aiA~~la~-~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~v~~~~~~~   87 (257)
T d1xg5a_           9 RDRLALVTGASGGIGAAVARALVQ-QGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQH   87 (257)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHH-CCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEEccCCCHHHHHHHHHHHHHhc
Confidence            478999999999999997777666 499999999998886654    33332 122  2  33322 1111       13


Q ss_pred             CCccEEEecCc
Q 016265          295 EKFDVVYDAIG  305 (392)
Q Consensus       295 ~~~D~vid~~G  305 (392)
                      +++|++|++.|
T Consensus        88 g~iD~lVnnAg   98 (257)
T d1xg5a_          88 SGVDICINNAG   98 (257)
T ss_dssp             CCCSEEEECCC
T ss_pred             CCCCEEEeccc
Confidence            47999999987

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=96.93  E-value=0.0011  Score=54.08  Aligned_cols=80  Identities=20%  Similarity=0.247  Sum_probs=52.2

Q ss_pred             HHHHhcC-CCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHH-hcCCcEEEeCCCCccccCCCCccEE
Q 016265          223 EGLERTG-FSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLK-SLGADLAIDYTKDNFEDLPEKFDVV  300 (392)
Q Consensus       223 ~al~~~~-~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~-~~G~~~vi~~~~~~~~~~~~~~D~v  300 (392)
                      ++|+..+ ..+|++|+|+| +||.+.+++..+... |++++++.++.+|.+.+. .+.....+.....+ ......+|++
T Consensus         7 ~~l~~~~~~~~~k~vlIlG-aGGaarai~~al~~~-g~~i~I~nRt~~ka~~l~~~~~~~~~~~~~~~~-~~~~~~~dli   83 (170)
T d1nyta1           7 SDLERLSFIRPGLRILLIG-AGGASRGVLLPLLSL-DCAVTITNRTVSRAEELAKLFAHTGSIQALSMD-ELEGHEFDLI   83 (170)
T ss_dssp             HHHHHHTCCCTTCEEEEEC-CSHHHHHHHHHHHHT-TCEEEEECSSHHHHHHHHHHTGGGSSEEECCSG-GGTTCCCSEE
T ss_pred             HHHHHcCCCCCCCEEEEEC-CcHHHHHHHHHhccc-ceEEEeccchHHHHHHHHHHHhhcccccccccc-ccccccccee
Confidence            4555544 35789999998 899999988888774 998888888888866654 33211111111111 1123468999


Q ss_pred             EecCc
Q 016265          301 YDAIG  305 (392)
Q Consensus       301 id~~G  305 (392)
                      |+|+.
T Consensus        84 IN~Tp   88 (170)
T d1nyta1          84 INATS   88 (170)
T ss_dssp             EECCS
T ss_pred             ecccc
Confidence            99974

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=96.91  E-value=0.0024  Score=55.34  Aligned_cols=73  Identities=18%  Similarity=0.266  Sum_probs=49.9

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCccc--HHHHHhcCCcEEE---eCCCCc-ccc-------CCCCcc
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRN--LEFLKSLGADLAI---DYTKDN-FED-------LPEKFD  298 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~--~~~~~~~G~~~vi---~~~~~~-~~~-------~~~~~D  298 (392)
                      +|+++||+||++++|.+.++.... .|++|+++++++++  .+.++++|.....   |..+.+ ..+       .-+++|
T Consensus         4 ~gKvalVTGas~GIG~aia~~la~-~Ga~V~~~~~~~~~~~~~~~~~~g~~~~~~~~Dvs~~~~v~~~~~~~~~~~G~iD   82 (247)
T d2ew8a1           4 KDKLAVITGGANGIGRAIAERFAV-EGADIAIADLVPAPEAEAAIRNLGRRVLTVKCDVSQPGDVEAFGKQVISTFGRCD   82 (247)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHH-TTCEEEEEESSCCHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSCCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHH-CCCEEEEEECCchHHHHHHHHHcCCcEEEEEeeCCCHHHHHHHHHHHHHHcCCCC
Confidence            578999999999999998877666 49999999876543  2344667754322   332221 111       124799


Q ss_pred             EEEecCc
Q 016265          299 VVYDAIG  305 (392)
Q Consensus       299 ~vid~~G  305 (392)
                      +++++.|
T Consensus        83 ilVnnAG   89 (247)
T d2ew8a1          83 ILVNNAG   89 (247)
T ss_dssp             EEEECCC
T ss_pred             EEEECCC
Confidence            9999987

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=96.89  E-value=0.0016  Score=55.48  Aligned_cols=95  Identities=17%  Similarity=0.245  Sum_probs=66.2

Q ss_pred             HHhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHH----hcCCcE--EEeCCCCccccCCCCcc
Q 016265          225 LERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLK----SLGADL--AIDYTKDNFEDLPEKFD  298 (392)
Q Consensus       225 l~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~----~~G~~~--vi~~~~~~~~~~~~~~D  298 (392)
                      ++.++++++++||=+| +| .|..+..+++.  |++++.++.+++-++.++    +.|.+.  ++..+..++.-..+.||
T Consensus         8 l~~~~l~~~~rVLDiG-cG-~G~~~~~l~~~--~~~v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~~~l~~~~~~fD   83 (231)
T d1vl5a_           8 MQIAALKGNEEVLDVA-TG-GGHVANAFAPF--VKKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTDERFH   83 (231)
T ss_dssp             HHHHTCCSCCEEEEET-CT-TCHHHHHHGGG--SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCTTCEE
T ss_pred             HHhcCCCCcCEEEEec-cc-CcHHHHHHHHh--CCEEEEEECCHHHHhhhhhcccccccccccccccccccccccccccc
Confidence            4678999999999998 44 68888888864  789999999988766664    345432  22222222221235699


Q ss_pred             EEEecCc---------cHHHHHHhcccCCeEEEE
Q 016265          299 VVYDAIG---------QCDRAVKAIKEGGTVVAL  323 (392)
Q Consensus       299 ~vid~~G---------~~~~~~~~l~~~G~iv~~  323 (392)
                      +|+..-.         .+..+.++|+|||+++..
T Consensus        84 ~v~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~  117 (231)
T d1vl5a_          84 IVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLV  117 (231)
T ss_dssp             EEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEE
T ss_pred             cccccccccccCCHHHHHHHHHHhcCCCcEEEEE
Confidence            9986532         257899999999999875

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=96.87  E-value=0.0015  Score=57.04  Aligned_cols=73  Identities=19%  Similarity=0.358  Sum_probs=51.3

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHH----HhcCCcEEE---eCCCCc-cc--------cCCC
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFL----KSLGADLAI---DYTKDN-FE--------DLPE  295 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~----~~~G~~~vi---~~~~~~-~~--------~~~~  295 (392)
                      +|+++||+||++++|.+.++.+.. .|++|+++.+++++++.+    ++.|....+   |..+.+ ..        +...
T Consensus         5 ~gK~alITGas~GIG~aia~~la~-~G~~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~g   83 (258)
T d1ae1a_           5 KGTTALVTGGSKGIGYAIVEELAG-LGARVYTCSRNEKELDECLEIWREKGLNVEGSVCDLLSRTERDKLMQTVAHVFDG   83 (258)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTTS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHH-CCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEeecCCHHHHHHHHHHHHHHhCC
Confidence            689999999999999998866555 499999999998776654    445544322   333322 11        1234


Q ss_pred             CccEEEecCc
Q 016265          296 KFDVVYDAIG  305 (392)
Q Consensus       296 ~~D~vid~~G  305 (392)
                      .+|+++++.|
T Consensus        84 ~idilinnag   93 (258)
T d1ae1a_          84 KLNILVNNAG   93 (258)
T ss_dssp             CCCEEEECCC
T ss_pred             CcEEEecccc
Confidence            6899999877

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.86  E-value=0.0019  Score=55.91  Aligned_cols=74  Identities=19%  Similarity=0.260  Sum_probs=51.0

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHH----HhcCCc-EEE--eCCCCc-cc-------cCCC
Q 016265          231 SAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFL----KSLGAD-LAI--DYTKDN-FE-------DLPE  295 (392)
Q Consensus       231 ~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~----~~~G~~-~vi--~~~~~~-~~-------~~~~  295 (392)
                      -.|++++|+||++++|...+.-... .|++|+++++++++++.+    ++.|.. +.+  |..+.+ ..       +..+
T Consensus         5 l~Gkv~lITGas~GIG~~ia~~la~-~G~~V~l~~r~~~~l~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~i~~~~g   83 (244)
T d1yb1a_           5 VTGEIVLITGAGHGIGRLTAYEFAK-LKSKLVLWDINKHGLEETAAKCKGLGAKVHTFVVDCSNREDIYSSAKKVKAEIG   83 (244)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHH-CCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHHcC
Confidence            3689999999999999886555545 499999999999887654    345543 222  333321 11       1234


Q ss_pred             CccEEEecCc
Q 016265          296 KFDVVYDAIG  305 (392)
Q Consensus       296 ~~D~vid~~G  305 (392)
                      .+|+++++.|
T Consensus        84 ~idilinnag   93 (244)
T d1yb1a_          84 DVSILVNNAG   93 (244)
T ss_dssp             CCSEEEECCC
T ss_pred             CCceeEeecc
Confidence            7999999987

>d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.86  E-value=0.0025  Score=57.00  Aligned_cols=73  Identities=22%  Similarity=0.296  Sum_probs=48.7

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcc---------cHHH----HHhcCCcEEEeCCCCc-ccc-----
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTR---------NLEF----LKSLGADLAIDYTKDN-FED-----  292 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~---------~~~~----~~~~G~~~vi~~~~~~-~~~-----  292 (392)
                      .|+++||+||++++|.+.++.... .|++|++.+.+.+         +++.    ....+.....|..+.+ .++     
T Consensus         6 ~gKvalITGas~GIG~aiA~~la~-~Ga~Vvi~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~   84 (302)
T d1gz6a_           6 DGRVVLVTGAGGGLGRAYALAFAE-RGALVVVNDLGGDFKGVGKGSSAADKVVEEIRRRGGKAVANYDSVEAGEKLVKTA   84 (302)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHH-TTCEEEEECCCBCTTSCBCCSHHHHHHHHHHHHTTCEEEEECCCGGGHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHH-cCCEEEEEeCCchhhhhhhhHHHHHHHHHHHhhcccccccccchHHHHHHHHHHH
Confidence            589999999999999997776655 4999998865322         2222    2334555556655432 111     


Q ss_pred             --CCCCccEEEecCc
Q 016265          293 --LPEKFDVVYDAIG  305 (392)
Q Consensus       293 --~~~~~D~vid~~G  305 (392)
                        .-+++|++|++.|
T Consensus        85 ~~~~G~iDiLVnNAG   99 (302)
T d1gz6a_          85 LDTFGRIDVVVNNAG   99 (302)
T ss_dssp             HHHTSCCCEEEECCC
T ss_pred             HHHcCCCCEEEECCc
Confidence              1357999999987

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=96.78  E-value=0.0011  Score=58.00  Aligned_cols=73  Identities=16%  Similarity=0.225  Sum_probs=52.4

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHH-HhcCCcEEE---eCCCCc-ccc-------CCCCccE
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFL-KSLGADLAI---DYTKDN-FED-------LPEKFDV  299 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~-~~~G~~~vi---~~~~~~-~~~-------~~~~~D~  299 (392)
                      +|++++|+||++++|++.++.... .|++|+++++++++++.+ +++|.....   |..+.+ ..+       .-+++|+
T Consensus         4 ~gK~alVTGas~GIG~aia~~la~-~Ga~V~~~~r~~~~l~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~~g~iDi   82 (256)
T d1k2wa_           4 DGKTALITGSARGIGRAFAEAYVR-EGARVAIADINLEAARATAAEIGPAACAIALDVTDQASIDRCVAELLDRWGSIDI   82 (256)
T ss_dssp             TTEEEEEETCSSHHHHHHHHHHHH-TTEEEEEEESCHHHHHHHHHHHCTTEEEEECCTTCHHHHHHHHHHHHHHHSCCCE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHH-CCCEEEEEECCHHHHHHHHHHhCCceEEEEeeCCCHHHHHHHHHHHHHHhCCccE
Confidence            588999999999999998876666 499999999988877654 567754322   333221 111       1247999


Q ss_pred             EEecCc
Q 016265          300 VYDAIG  305 (392)
Q Consensus       300 vid~~G  305 (392)
                      ++++.|
T Consensus        83 lVnnAg   88 (256)
T d1k2wa_          83 LVNNAA   88 (256)
T ss_dssp             EEECCC
T ss_pred             EEeecc
Confidence            999987

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=96.77  E-value=0.0044  Score=53.42  Aligned_cols=73  Identities=29%  Similarity=0.346  Sum_probs=52.2

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHH-HhcCCcEE-E--eCCCC-cccc-------CCCCccE
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFL-KSLGADLA-I--DYTKD-NFED-------LPEKFDV  299 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~-~~~G~~~v-i--~~~~~-~~~~-------~~~~~D~  299 (392)
                      .|+++||+||++++|.+.++-... .|++|+++.++.++++.+ +++|.+.. +  |..++ +..+       .-+++|+
T Consensus         4 ~gK~alItGas~GIG~aia~~l~~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dls~~~~i~~~~~~i~~~~g~iDi   82 (241)
T d2a4ka1           4 SGKTILVTGAASGIGRAALDLFAR-EGASLVAVDREERLLAEAVAALEAEAIAVVADVSDPKAVEAVFAEALEEFGRLHG   82 (241)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHTCCSSEEEEECCTTSHHHHHHHHHHHHHHHSCCCE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHH-CCCEEEEEECCHHHHHHHHHHcCCceEEEEecCCCHHHHHHHHHHHHHHhCCccE
Confidence            689999999999999998877766 499999999988876655 56775432 2  32221 1111       1247999


Q ss_pred             EEecCc
Q 016265          300 VYDAIG  305 (392)
Q Consensus       300 vid~~G  305 (392)
                      +|++.|
T Consensus        83 LinnAg   88 (241)
T d2a4ka1          83 VAHFAG   88 (241)
T ss_dssp             EEEGGG
T ss_pred             eccccc
Confidence            999876

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=96.76  E-value=0.0017  Score=57.00  Aligned_cols=73  Identities=25%  Similarity=0.452  Sum_probs=50.5

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHH-hcCC---cEEE--eCCCC-cccc-------CCCCc
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLK-SLGA---DLAI--DYTKD-NFED-------LPEKF  297 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~-~~G~---~~vi--~~~~~-~~~~-------~~~~~  297 (392)
                      .|+++||+||++++|.+.++.... .|++|+++++++++++.+. +++.   ...+  |..+. +..+       .-+++
T Consensus         5 ~gKvalITGas~GIG~aia~~la~-~Ga~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i   83 (268)
T d2bgka1           5 QDKVAIITGGAGGIGETTAKLFVR-YGAKVVIADIADDHGQKVCNNIGSPDVISFVHCDVTKDEDVRNLVDTTIAKHGKL   83 (268)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHH-CCCEEEEEECCHHHHHHHHHHhcCCCceEEEEccCCCHHHHHHHHHHHHHHcCCc
Confidence            689999999999999998776655 4999999999988877653 4432   2222  32221 1111       12478


Q ss_pred             cEEEecCc
Q 016265          298 DVVYDAIG  305 (392)
Q Consensus       298 D~vid~~G  305 (392)
                      |+++++.|
T Consensus        84 D~lVnnAG   91 (268)
T d2bgka1          84 DIMFGNVG   91 (268)
T ss_dssp             CEEEECCC
T ss_pred             ceeccccc
Confidence            99999876

>d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.76  E-value=0.0022  Score=55.11  Aligned_cols=37  Identities=22%  Similarity=0.443  Sum_probs=30.8

Q ss_pred             CCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCccc
Q 016265          233 GKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRN  270 (392)
Q Consensus       233 g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~  270 (392)
                      +.+|||+||++++|.+.++.+.. .|++|+++++++++
T Consensus         2 ~gkVlITGas~GIG~aia~~l~~-~G~~V~~~~~~~~~   38 (235)
T d1ooea_           2 SGKVIVYGGKGALGSAILEFFKK-NGYTVLNIDLSAND   38 (235)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHH-TTEEEEEEESSCCT
T ss_pred             CCEEEEECCCCHHHHHHHHHHHH-CCCEEEEEECCchh
Confidence            35799999999999998887777 49999999886543

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.75  E-value=0.0025  Score=54.39  Aligned_cols=100  Identities=14%  Similarity=0.172  Sum_probs=62.5

Q ss_pred             HHHHh--cCCCCCCeEEEEcCCCcHHHHHHHHHHHh--cC----CeEEEEeCCcccHHHHHh---------cCCcE--EE
Q 016265          223 EGLER--TGFSAGKSILVLNGSGGVGSLVIQLAKQV--FG----ASRVAATSSTRNLEFLKS---------LGADL--AI  283 (392)
Q Consensus       223 ~al~~--~~~~~g~~VlI~Ga~G~vG~~aiqlak~~--~G----~~vv~~~~~~~~~~~~~~---------~G~~~--vi  283 (392)
                      ..++.  ..+++|++||.+|  ++.|..++.+++.+  .|    .+|+.++..++-.+.+++         .+...  ++
T Consensus        69 ~~l~~L~~~l~~g~~VLeIG--tGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~  146 (223)
T d1r18a_          69 FALEYLRDHLKPGARILDVG--SGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIV  146 (223)
T ss_dssp             HHHHHTTTTCCTTCEEEEES--CTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEE
T ss_pred             HHHHHHhhccCCCCeEEEec--CCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEE
Confidence            34443  3789999999998  34577777777764  12    378888887765555432         12222  22


Q ss_pred             eCCCCccccCCCCccEEEecCc---cHHHHHHhcccCCeEEEEc
Q 016265          284 DYTKDNFEDLPEKFDVVYDAIG---QCDRAVKAIKEGGTVVALT  324 (392)
Q Consensus       284 ~~~~~~~~~~~~~~D~vid~~G---~~~~~~~~l~~~G~iv~~g  324 (392)
                      ..+..........||.|+-+.+   ..+..++.|++||++|..-
T Consensus       147 ~~d~~~~~~~~~~fD~Iiv~~a~~~~p~~l~~~Lk~gG~lV~pv  190 (223)
T d1r18a_         147 EGDGRKGYPPNAPYNAIHVGAAAPDTPTELINQLASGGRLIVPV  190 (223)
T ss_dssp             ESCGGGCCGGGCSEEEEEECSCBSSCCHHHHHTEEEEEEEEEEE
T ss_pred             ecccccccccccceeeEEEEeechhchHHHHHhcCCCcEEEEEE
Confidence            2221111112347999887655   2478899999999998753

>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Drosophila alcohol dehydrogenase
species: Fly (Drosophila lebanonensis) [TaxId: 7225]

Probab=96.75  E-value=0.0034  Score=54.63  Aligned_cols=73  Identities=15%  Similarity=0.148  Sum_probs=47.3

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHh----cCCcEE----EeCC-CC-ccccC-------C
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKS----LGADLA----IDYT-KD-NFEDL-------P  294 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~----~G~~~v----i~~~-~~-~~~~~-------~  294 (392)
                      .|++|||+||++++|.+.+..... .|++++++.++.++.+.+++    .+...+    .|.. +. .+.+.       -
T Consensus         4 ~gK~vlITGgs~GIG~~~A~~la~-~G~~vii~~r~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~   82 (254)
T d1sbya1           4 TNKNVIFVAALGGIGLDTSRELVK-RNLKNFVILDRVENPTALAELKAINPKVNITFHTYDVTVPVAESKKLLKKIFDQL   82 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHH-TCCSEEEEEESSCCHHHHHHHHHHCTTSEEEEEECCTTSCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHH-CCCEEEEEECCcccHHHHHHHHhhCCCCCEEEEEeecCCCHHHHHHHHHHHHHHc
Confidence            589999999999999986665545 49999999876666554432    222221    2322 11 12111       2


Q ss_pred             CCccEEEecCc
Q 016265          295 EKFDVVYDAIG  305 (392)
Q Consensus       295 ~~~D~vid~~G  305 (392)
                      +++|+++++.|
T Consensus        83 g~iDilvnnAG   93 (254)
T d1sbya1          83 KTVDILINGAG   93 (254)
T ss_dssp             SCCCEEEECCC
T ss_pred             CCCCEEEeCCC
Confidence            47999999988

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

Probab=96.73  E-value=0.0012  Score=58.41  Aligned_cols=73  Identities=22%  Similarity=0.314  Sum_probs=51.3

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHH-HhcCCcEE-E--eCCCCc-ccc-------CCCCccE
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFL-KSLGADLA-I--DYTKDN-FED-------LPEKFDV  299 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~-~~~G~~~v-i--~~~~~~-~~~-------~~~~~D~  299 (392)
                      .|+++||+||++++|.+.++.... .|++|+++++++++++.+ +++|.... +  |..+.+ ..+       .-+++|+
T Consensus         4 ~gK~alITGas~GIG~aia~~la~-~Ga~V~i~~r~~~~l~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~idi   82 (276)
T d1bdba_           4 KGEAVLITGGASGLGRALVDRFVA-EGAKVAVLDKSAERLAELETDHGDNVLGIVGDVRSLEDQKQAASRCVARFGKIDT   82 (276)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHGGGEEEEECCTTCHHHHHHHHHHHHHHHSCCCE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHH-CCCEEEEEECCHHHHHHHHHHcCCCeeEEecccccHHHHHHHHHHHHHHhCCccc
Confidence            589999999999999997776666 499999999998887665 45664322 2  332221 111       1247899


Q ss_pred             EEecCc
Q 016265          300 VYDAIG  305 (392)
Q Consensus       300 vid~~G  305 (392)
                      ++++.|
T Consensus        83 lvnnAG   88 (276)
T d1bdba_          83 LIPNAG   88 (276)
T ss_dssp             EECCCC
T ss_pred             cccccc
Confidence            998876

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=96.72  E-value=0.0023  Score=56.79  Aligned_cols=73  Identities=22%  Similarity=0.348  Sum_probs=50.4

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHH-----HhcCCcE-EE--eCCCCc-cc-------cCCC
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFL-----KSLGADL-AI--DYTKDN-FE-------DLPE  295 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~-----~~~G~~~-vi--~~~~~~-~~-------~~~~  295 (392)
                      .|+++||+||++++|.+.+..... .|++|++++++.++++.+     .+.|... .+  |..+.+ ..       +...
T Consensus        24 ~gK~alITGas~GIG~aiA~~la~-~Ga~Vii~~r~~~~l~~~~~~l~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~~~g  102 (294)
T d1w6ua_          24 QGKVAFITGGGTGLGKGMTTLLSS-LGAQCVIASRKMDVLKATAEQISSQTGNKVHAIQCDVRDPDMVQNTVSELIKVAG  102 (294)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHH-cCCEEEEEECCHHHHHHHHHHHHHhcCCceEEEEecccChHHHHHHhhhhhhhcc
Confidence            589999999999999998766655 499999999988776543     2345433 33  222211 11       1145


Q ss_pred             CccEEEecCc
Q 016265          296 KFDVVYDAIG  305 (392)
Q Consensus       296 ~~D~vid~~G  305 (392)
                      ++|+++++.|
T Consensus       103 ~iDilvnnAg  112 (294)
T d1w6ua_         103 HPNIVINNAA  112 (294)
T ss_dssp             SCSEEEECCC
T ss_pred             ccchhhhhhh
Confidence            7999999987

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.72  E-value=0.0047  Score=53.94  Aligned_cols=99  Identities=15%  Similarity=0.181  Sum_probs=67.3

Q ss_pred             HHHhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhc-CCeEEEEeCCcccHHHHHh----c-C--CcEE-EeCCCCccccC-
Q 016265          224 GLERTGFSAGKSILVLNGSGGVGSLVIQLAKQVF-GASRVAATSSTRNLEFLKS----L-G--ADLA-IDYTKDNFEDL-  293 (392)
Q Consensus       224 al~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~-G~~vv~~~~~~~~~~~~~~----~-G--~~~v-i~~~~~~~~~~-  293 (392)
                      .+..++++||++||=.| + |.|.++..+|+.+. ..+++.++.+++..+.+++    + +  .+.+ +...+..-... 
T Consensus        88 Ii~~l~i~PG~~VLE~G-~-GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~~~~~~  165 (264)
T d1i9ga_          88 IVHEGDIFPGARVLEAG-A-GSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSELP  165 (264)
T ss_dssp             HHHHTTCCTTCEEEEEC-C-TTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCCC
T ss_pred             HHHHhCCCCCCEEEecC-c-CCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEeccccccccc
Confidence            44678999999999987 4 55899999999862 2478888989888887754    2 1  2221 21111111112 


Q ss_pred             CCCccEEEecCc----cHHHHHHhcccCCeEEEEc
Q 016265          294 PEKFDVVYDAIG----QCDRAVKAIKEGGTVVALT  324 (392)
Q Consensus       294 ~~~~D~vid~~G----~~~~~~~~l~~~G~iv~~g  324 (392)
                      ...||.||--..    .++.+.++|+|||+++.+.
T Consensus       166 ~~~fDaV~ldlp~P~~~l~~~~~~LkpGG~lv~~~  200 (264)
T d1i9ga_         166 DGSVDRAVLDMLAPWEVLDAVSRLLVAGGVLMVYV  200 (264)
T ss_dssp             TTCEEEEEEESSCGGGGHHHHHHHEEEEEEEEEEE
T ss_pred             CCCcceEEEecCCHHHHHHHHHhccCCCCEEEEEe
Confidence            346897775444    3689999999999998763

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=96.71  E-value=0.0028  Score=55.37  Aligned_cols=73  Identities=21%  Similarity=0.312  Sum_probs=47.7

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCc-ccHHHH-----HhcCCcEEE---eCCCCc-cccC-------C
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSST-RNLEFL-----KSLGADLAI---DYTKDN-FEDL-------P  294 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~-~~~~~~-----~~~G~~~vi---~~~~~~-~~~~-------~  294 (392)
                      +|+++||+||++++|.+.++.... .|++|+++.+++ ++++.+     .+.|.....   |..+.+ ..+.       -
T Consensus         3 ~gK~alITGas~GIG~aiA~~la~-~Ga~V~~~~r~~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~   81 (260)
T d1x1ta1           3 KGKVAVVTGSTSGIGLGIATALAA-QGADIVLNGFGDAAEIEKVRAGLAAQHGVKVLYDGADLSKGEAVRGLVDNAVRQM   81 (260)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHH-TTCEEEEECCSCHHHHHHHHHHHHHHHTSCEEEECCCTTSHHHHHHHHHHHHHHH
T ss_pred             CcCEEEEeCCCCHHHHHHHHHHHH-CCCEEEEEeCCcHHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHh
Confidence            688999999999999987765555 499999998864 444433     234544332   322211 1111       2


Q ss_pred             CCccEEEecCc
Q 016265          295 EKFDVVYDAIG  305 (392)
Q Consensus       295 ~~~D~vid~~G  305 (392)
                      +++|++|++.|
T Consensus        82 G~iDiLVnnAG   92 (260)
T d1x1ta1          82 GRIDILVNNAG   92 (260)
T ss_dssp             SCCSEEEECCC
T ss_pred             CCCcEEEeecc
Confidence            47999999987

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.71  E-value=0.0017  Score=56.32  Aligned_cols=73  Identities=21%  Similarity=0.252  Sum_probs=51.3

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHH-HhcCCcE-EE--eCCCCc-ccc-------CCCCccE
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFL-KSLGADL-AI--DYTKDN-FED-------LPEKFDV  299 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~-~~~G~~~-vi--~~~~~~-~~~-------~~~~~D~  299 (392)
                      .|++++|+||++++|.+.++.... .|++|+++++++++++.+ ++++... .+  |..+.+ ..+       .-+++|+
T Consensus         5 ~gK~alITGas~GIG~aia~~la~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~idi   83 (244)
T d1nffa_           5 TGKVALVSGGARGMGASHVRAMVA-EGAKVVFGDILDEEGKAMAAELADAARYVHLDVTQPAQWKAAVDTAVTAFGGLHV   83 (244)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHHTGGGEEEEECCTTCHHHHHHHHHHHHHHHSCCCE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHH-CCCEEEEEECCHHHHHHHHHHhhCcceEEEeecCCHHHHHHHHHHHHHHhCCCeE
Confidence            589999999999999998776655 499999999998887665 4555322 22  332221 111       1246999


Q ss_pred             EEecCc
Q 016265          300 VYDAIG  305 (392)
Q Consensus       300 vid~~G  305 (392)
                      ++++.|
T Consensus        84 linnAG   89 (244)
T d1nffa_          84 LVNNAG   89 (244)
T ss_dssp             EEECCC
T ss_pred             EEECCc
Confidence            999987

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=96.69  E-value=0.0027  Score=54.52  Aligned_cols=70  Identities=27%  Similarity=0.358  Sum_probs=48.4

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEE-eCCCC--ccccCCCCccEEEecCc
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAI-DYTKD--NFEDLPEKFDVVYDAIG  305 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi-~~~~~--~~~~~~~~~D~vid~~G  305 (392)
                      +|+++||+||++++|.+.++.... .|++|++++++++++   ++.+...+. |..+.  ...+.-+.+|+++++.|
T Consensus         3 kgK~~lVTGas~GIG~aia~~l~~-~Ga~V~~~~r~~~~l---~~~~~~~~~~Dv~~~~~~~~~~~g~iD~lVnnAG   75 (234)
T d1o5ia_           3 RDKGVLVLAASRGIGRAVADVLSQ-EGAEVTICARNEELL---KRSGHRYVVCDLRKDLDLLFEKVKEVDILVLNAG   75 (234)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHH-TTCEEEEEESCHHHH---HHTCSEEEECCTTTCHHHHHHHSCCCSEEEECCC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHH-CCCEEEEEECCHHHH---HhcCCcEEEcchHHHHHHHHHHhCCCcEEEeccc
Confidence            578999999999999998877666 499999999876544   445543322 32221  11122357999999876

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=96.61  E-value=0.0016  Score=56.76  Aligned_cols=73  Identities=21%  Similarity=0.332  Sum_probs=51.0

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHH----HhcCCcEE-E--eCCCCc-ccc-------CCCC
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFL----KSLGADLA-I--DYTKDN-FED-------LPEK  296 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~----~~~G~~~v-i--~~~~~~-~~~-------~~~~  296 (392)
                      .|+++||+||++++|.+.++.... .|++|+++.+++++++.+    ++.|.... +  |..+++ ..+       .-++
T Consensus        10 ~gK~alITGas~GIG~aia~~la~-~Ga~V~~~~r~~~~~~~~~~~l~~~g~~~~~~~~Dvs~~~~~~~~~~~~~~~~g~   88 (255)
T d1fmca_          10 DGKCAIITGAGAGIGKEIAITFAT-AGASVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFAISKLGK   88 (255)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHT-TTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHH-CCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            689999999999999998776655 499999999988876544    45564432 2  222211 111       1247


Q ss_pred             ccEEEecCc
Q 016265          297 FDVVYDAIG  305 (392)
Q Consensus       297 ~D~vid~~G  305 (392)
                      +|+++++.|
T Consensus        89 iDilvnnAG   97 (255)
T d1fmca_          89 VDILVNNAG   97 (255)
T ss_dssp             CCEEEECCC
T ss_pred             CCEeeeCCc
Confidence            999999987

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.61  E-value=0.0006  Score=57.35  Aligned_cols=92  Identities=23%  Similarity=0.246  Sum_probs=61.7

Q ss_pred             CCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEE-eCCC-CccccCCCCccEEEecCcc----
Q 016265          233 GKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAI-DYTK-DNFEDLPEKFDVVYDAIGQ----  306 (392)
Q Consensus       233 g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi-~~~~-~~~~~~~~~~D~vid~~G~----  306 (392)
                      .++|+|+||+|.+|...+..+.. .|.+|++++++++++......+...+. |..+ +.+.+...++|+||.++|.    
T Consensus         3 ~kkIlV~GatG~iG~~v~~~Ll~-~g~~V~~~~R~~~~~~~~~~~~~~~~~gD~~d~~~l~~al~~~d~vi~~~g~~~~~   81 (205)
T d1hdoa_           3 VKKIAIFGATGQTGLTTLAQAVQ-AGYEVTVLVRDSSRLPSEGPRPAHVVVGDVLQAADVDKTVAGQDAVIVLLGTRNDL   81 (205)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHH-TTCEEEEEESCGGGSCSSSCCCSEEEESCTTSHHHHHHHHTTCSEEEECCCCTTCC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHH-CcCEEEEEEcChhhcccccccccccccccccchhhHHHHhcCCCEEEEEeccCCch
Confidence            46899999999999998876666 499999999988876544444443322 2222 1223334689999999872    


Q ss_pred             ---------HHHHHHhcccCC--eEEEEcC
Q 016265          307 ---------CDRAVKAIKEGG--TVVALTG  325 (392)
Q Consensus       307 ---------~~~~~~~l~~~G--~iv~~g~  325 (392)
                               ...+++.++..|  +++.++.
T Consensus        82 ~~~~~~~~~~~~l~~aa~~~~v~r~i~~ss  111 (205)
T d1hdoa_          82 SPTTVMSEGARNIVAAMKAHGVDKVVACTS  111 (205)
T ss_dssp             SCCCHHHHHHHHHHHHHHHHTCCEEEEECC
T ss_pred             hhhhhhHHHHHHHHHHHHhcCCCeEEEEee
Confidence                     134555555543  6777754

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=96.59  E-value=0.0025  Score=55.67  Aligned_cols=73  Identities=18%  Similarity=0.235  Sum_probs=50.5

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHH-----HhcCCcEE-E--eCCCCc-ccc-------CCC
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFL-----KSLGADLA-I--DYTKDN-FED-------LPE  295 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~-----~~~G~~~v-i--~~~~~~-~~~-------~~~  295 (392)
                      .|+++||+||++++|.+.++.... .|++|+++++++++++.+     +++|.... +  |..+.+ ..+       .-+
T Consensus         8 ~gK~alITGas~GIG~aia~~la~-~Ga~V~i~~r~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   86 (260)
T d1h5qa_           8 VNKTIIVTGGNRGIGLAFTRAVAA-AGANVAVIYRSAADAVEVTEKVGKEFGVKTKAYQCDVSNTDIVTKTIQQIDADLG   86 (260)
T ss_dssp             TTEEEEEETTTSHHHHHHHHHHHH-TTEEEEEEESSCTTHHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHH-CCCEEEEEECCHHHHHHHHHHHHHHhCCceEEEEccCCCHHHHHHHHHHHHHHhC
Confidence            588999999999999998776666 499999999987776443     34564432 2  332221 111       135


Q ss_pred             CccEEEecCc
Q 016265          296 KFDVVYDAIG  305 (392)
Q Consensus       296 ~~D~vid~~G  305 (392)
                      ++|+++++.|
T Consensus        87 ~iDilVnnAg   96 (260)
T d1h5qa_          87 PISGLIANAG   96 (260)
T ss_dssp             SEEEEEECCC
T ss_pred             CCcEeccccc
Confidence            7999999876

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=96.56  E-value=0.0024  Score=55.54  Aligned_cols=73  Identities=16%  Similarity=0.226  Sum_probs=50.2

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHH-hcCC--c-EEE--eCCCCc-ccc-------CCCCc
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLK-SLGA--D-LAI--DYTKDN-FED-------LPEKF  297 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~-~~G~--~-~vi--~~~~~~-~~~-------~~~~~  297 (392)
                      .|+++||+||++++|.+.++.... .|++|+++++++++++.+. +++.  . ..+  |..+.+ ..+       .-+++
T Consensus         5 ~gK~alVTGas~GIG~aia~~la~-~Ga~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~i   83 (251)
T d1zk4a1           5 DGKVAIITGGTLGIGLAIATKFVE-EGAKVMITGRHSDVGEKAAKSVGTPDQIQFFQHDSSDEDGWTKLFDATEKAFGPV   83 (251)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHHHHSSC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHH-CCCEEEEEECCHHHHHHHHHHhCCCCcEEEEEccCCCHHHHHHHHHHHHHHhCCc
Confidence            589999999999999998776655 4999999999888877654 3331  1 222  322221 111       12479


Q ss_pred             cEEEecCc
Q 016265          298 DVVYDAIG  305 (392)
Q Consensus       298 D~vid~~G  305 (392)
                      |+++++.|
T Consensus        84 DiLVnnAg   91 (251)
T d1zk4a1          84 STLVNNAG   91 (251)
T ss_dssp             CEEEECCC
T ss_pred             eEEEeccc
Confidence            99999987

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=96.55  E-value=0.0028  Score=52.09  Aligned_cols=94  Identities=15%  Similarity=0.073  Sum_probs=63.7

Q ss_pred             HhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcC-Cc---------EEEeCCCCcc-----
Q 016265          226 ERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLG-AD---------LAIDYTKDNF-----  290 (392)
Q Consensus       226 ~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G-~~---------~vi~~~~~~~-----  290 (392)
                      ....+.+|.+||..| + |.|..+..+|+.  |.+|+.++.|+.-++.+++.. ..         ...+.....+     
T Consensus        14 ~~l~~~~~~rvLd~G-C-G~G~~a~~la~~--G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~   89 (201)
T d1pjza_          14 SSLNVVPGARVLVPL-C-GKSQDMSWLSGQ--GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDF   89 (201)
T ss_dssp             HHHCCCTTCEEEETT-T-CCSHHHHHHHHH--CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECC
T ss_pred             HHcCCCCCCEEEEec-C-cCCHHHHHHHHc--CCceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceecccc
Confidence            445789999999997 4 558899999974  999999999999888887531 11         1111111111     


Q ss_pred             ccC----CCCccEEEecCc--c---------HHHHHHhcccCCeEEEE
Q 016265          291 EDL----PEKFDVVYDAIG--Q---------CDRAVKAIKEGGTVVAL  323 (392)
Q Consensus       291 ~~~----~~~~D~vid~~G--~---------~~~~~~~l~~~G~iv~~  323 (392)
                      .+.    ...+|+|++...  .         +..+.++|+|||+++..
T Consensus        90 ~~l~~~~~~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~LkpgG~l~l~  137 (201)
T d1pjza_          90 FALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLI  137 (201)
T ss_dssp             SSSTHHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEE
T ss_pred             cccccccccceeEEEEEeeeEecchhhhHHHHHHHHHhcCCCcEEEEE
Confidence            111    235899988633  1         36788899999997654

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=96.53  E-value=0.0027  Score=55.96  Aligned_cols=73  Identities=25%  Similarity=0.341  Sum_probs=49.9

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHH----HhcCCc----EEE--eCCCCc-ccc-------C
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFL----KSLGAD----LAI--DYTKDN-FED-------L  293 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~----~~~G~~----~vi--~~~~~~-~~~-------~  293 (392)
                      .|++++|+||++++|.+.++.... .|++|+++++++++++.+    ++.|..    ..+  |..+.+ ..+       .
T Consensus         3 ~gK~alITGas~GIG~aia~~la~-~Ga~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   81 (274)
T d1xhla_           3 SGKSVIITGSSNGIGRSAAVIFAK-EGAQVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLAK   81 (274)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHH-CCCEEEEEECCHHHHHHHHHHHHHcCCCCcceEEEEeeCCCHHHHHHHHHHHHHH
Confidence            589999999999999997776656 499999999998877654    334421    122  333321 111       1


Q ss_pred             CCCccEEEecCc
Q 016265          294 PEKFDVVYDAIG  305 (392)
Q Consensus       294 ~~~~D~vid~~G  305 (392)
                      -+++|+++++.|
T Consensus        82 ~G~iDilVnnAG   93 (274)
T d1xhla_          82 FGKIDILVNNAG   93 (274)
T ss_dssp             HSCCCEEEECCC
T ss_pred             cCCceEEEeecc
Confidence            247899999876

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=96.52  E-value=0.0061  Score=53.57  Aligned_cols=95  Identities=13%  Similarity=0.084  Sum_probs=65.8

Q ss_pred             HhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHh----cCCc---EEEeCCCCccccCCCCcc
Q 016265          226 ERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKS----LGAD---LAIDYTKDNFEDLPEKFD  298 (392)
Q Consensus       226 ~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~----~G~~---~vi~~~~~~~~~~~~~~D  298 (392)
                      ....+.+|++||=+| +| .|..+..+++. +|++|+.++.++..++.+++    .|.+   .++..+-.++....+.||
T Consensus        61 ~~~~l~~~~~vLDiG-cG-~G~~~~~la~~-~~~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l~~~~~sfD  137 (282)
T d2o57a1          61 MTGVLQRQAKGLDLG-AG-YGGAARFLVRK-FGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCEDNSYD  137 (282)
T ss_dssp             HTTCCCTTCEEEEET-CT-TSHHHHHHHHH-HCCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSCTTCEE
T ss_pred             HhcCCCCCCEEEEeC-CC-CcHHHhhhhcc-CCcEEEEEeccchhhhhhhcccccccccccccccccccccccccccccc
Confidence            456789999999997 44 57788889987 59999999999887766653    3432   122222222221235699


Q ss_pred             EEEecCc---------cHHHHHHhcccCCeEEEE
Q 016265          299 VVYDAIG---------QCDRAVKAIKEGGTVVAL  323 (392)
Q Consensus       299 ~vid~~G---------~~~~~~~~l~~~G~iv~~  323 (392)
                      +|+-.-.         .+..+.++|+|||+++..
T Consensus       138 ~V~~~~~l~h~~d~~~~l~~~~~~LkpgG~l~~~  171 (282)
T d2o57a1         138 FIWSQDAFLHSPDKLKVFQECARVLKPRGVMAIT  171 (282)
T ss_dssp             EEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEE
T ss_pred             hhhccchhhhccCHHHHHHHHHHhcCCCcEEEEE
Confidence            9985422         147888999999998875

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.52  E-value=0.011  Score=47.37  Aligned_cols=100  Identities=19%  Similarity=0.249  Sum_probs=73.6

Q ss_pred             HHHHHHHh--cCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCCccccCCCCc
Q 016265          220 TAYEGLER--TGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFEDLPEKF  297 (392)
Q Consensus       220 ta~~al~~--~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~~~~~~~  297 (392)
                      +.+.++.+  .-.-.|++|+|.| -|-+|...++.++. +|++|++++..+-+.-.+.-.|....      .+.+.....
T Consensus         9 S~~~~~~r~t~~~l~Gk~v~V~G-yG~iG~g~A~~~rg-~G~~V~v~e~dp~~al~A~~dG~~v~------~~~~a~~~a   80 (163)
T d1li4a1           9 SLIDGIKRATDVMIAGKVAVVAG-YGDVGKGCAQALRG-FGARVIITEIDPINALQAAMEGYEVT------TMDEACQEG   80 (163)
T ss_dssp             HHHHHHHHHHCCCCTTCEEEEEC-CSHHHHHHHHHHHH-TTCEEEEECSCHHHHHHHHHTTCEEC------CHHHHTTTC
T ss_pred             hHHHHHHHHhCceecCCEEEEec-cccccHHHHHHHHh-CCCeeEeeecccchhHHhhcCceEee------ehhhhhhhc
Confidence            34455533  2356899999998 99999999999999 59999999988766555544454321      233445567


Q ss_pred             cEEEecCcc----HHHHHHhcccCCeEEEEcCCC
Q 016265          298 DVVYDAIGQ----CDRAVKAIKEGGTVVALTGAV  327 (392)
Q Consensus       298 D~vid~~G~----~~~~~~~l~~~G~iv~~g~~~  327 (392)
                      |+++-++|.    -.+-++.|++|..+...|...
T Consensus        81 divvtaTGn~~vI~~eh~~~MKdgaIL~N~Ghfd  114 (163)
T d1li4a1          81 NIFVTTTGCIDIILGRHFEQMKDDAIVCNIGHFD  114 (163)
T ss_dssp             SEEEECSSCSCSBCHHHHTTCCTTEEEEECSSST
T ss_pred             cEEEecCCCccchhHHHHHhccCCeEEEEecccc
Confidence            999999994    278889999988887777544

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=96.50  E-value=0.004  Score=54.15  Aligned_cols=72  Identities=17%  Similarity=0.213  Sum_probs=49.7

Q ss_pred             CCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHH----HhcCCcEE---EeCCCCc-ccc-------CCCCc
Q 016265          233 GKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFL----KSLGADLA---IDYTKDN-FED-------LPEKF  297 (392)
Q Consensus       233 g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~----~~~G~~~v---i~~~~~~-~~~-------~~~~~  297 (392)
                      |+.+||+||++++|.+.+..+.. .|++|+++++++++++.+    ++.|....   .|..+.+ ..+       .-+++
T Consensus         2 gKValITGas~GIG~aia~~la~-~Ga~V~i~~r~~~~l~~~~~~l~~~g~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~i   80 (257)
T d2rhca1           2 SEVALVTGATSGIGLEIARRLGK-EGLRVFVCARGEEGLRTTLKELREAGVEADGRTCDVRSVPEIEALVAAVVERYGPV   80 (257)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTCSC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHH-CCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHHHHHHhCCC
Confidence            67789999999999987776555 499999999988876654    44564432   2332221 111       13579


Q ss_pred             cEEEecCc
Q 016265          298 DVVYDAIG  305 (392)
Q Consensus       298 D~vid~~G  305 (392)
                      |++|++.|
T Consensus        81 DilVnnAG   88 (257)
T d2rhca1          81 DVLVNNAG   88 (257)
T ss_dssp             SEEEECCC
T ss_pred             CEEEeccc
Confidence            99999987

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=96.50  E-value=0.0036  Score=53.41  Aligned_cols=94  Identities=13%  Similarity=0.223  Sum_probs=64.5

Q ss_pred             HhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHh----cCCcE--EEeCCCCccccCCCCccE
Q 016265          226 ERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKS----LGADL--AIDYTKDNFEDLPEKFDV  299 (392)
Q Consensus       226 ~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~----~G~~~--vi~~~~~~~~~~~~~~D~  299 (392)
                      +.+.+++|++||=+| + |.|..+..+++.  +.+++.++.++.-++.+++    .|.+.  ++..+...+.-..+.||+
T Consensus        10 ~~~~~~~~~rILDiG-c-GtG~~~~~la~~--~~~v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~   85 (234)
T d1xxla_          10 KTAECRAEHRVLDIG-A-GAGHTALAFSPY--VQECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDDSFDI   85 (234)
T ss_dssp             HHHTCCTTCEEEEES-C-TTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTTCEEE
T ss_pred             HHhCCCCCCEEEEeC-C-cCcHHHHHHHHh--CCeEEEEeCChhhhhhhhhhhcccccccccccccccccccccccccce
Confidence            678999999999997 4 458888888874  7899999999887766643    34332  122111222112346999


Q ss_pred             EEecCc---------cHHHHHHhcccCCeEEEE
Q 016265          300 VYDAIG---------QCDRAVKAIKEGGTVVAL  323 (392)
Q Consensus       300 vid~~G---------~~~~~~~~l~~~G~iv~~  323 (392)
                      |+.+-.         .+..+.+.|+|||+++..
T Consensus        86 v~~~~~l~~~~d~~~~l~~~~r~LkpgG~~~~~  118 (234)
T d1xxla_          86 ITCRYAAHHFSDVRKAVREVARVLKQDGRFLLV  118 (234)
T ss_dssp             EEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEE
T ss_pred             eeeeceeecccCHHHHHHHHHHeeCCCcEEEEE
Confidence            986532         157888999999998765

>d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Halohydrin dehalogenase HheC
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=96.48  E-value=0.002  Score=56.01  Aligned_cols=68  Identities=12%  Similarity=0.003  Sum_probs=46.2

Q ss_pred             eEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcC----CcEEEeCCCCcccc-------CCCCccEEEec
Q 016265          235 SILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLG----ADLAIDYTKDNFED-------LPEKFDVVYDA  303 (392)
Q Consensus       235 ~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G----~~~vi~~~~~~~~~-------~~~~~D~vid~  303 (392)
                      ++||+||++++|++.+..+.. .|++|++.+++.++++.+++.+    ...+.+  .++..+       .-+++|++|++
T Consensus         2 TAlVTGas~GiG~aiA~~la~-~Ga~V~i~~r~~~~~~~~~~~~~~~~~~dv~~--~~~~~~~~~~~~~~~G~iDiLVnN   78 (252)
T d1zmta1           2 TAIVTNVKHFGGMGSALRLSE-AGHTVACHDESFKQKDELEAFAETYPQLKPMS--EQEPAELIEAVTSAYGQVDVLVSN   78 (252)
T ss_dssp             EEEESSTTSTTHHHHHHHHHH-TTCEEEECCGGGGSHHHHHHHHHHCTTSEECC--CCSHHHHHHHHHHHHSCCCEEEEE
T ss_pred             EEEEECCCCHHHHHHHHHHHH-CCCEEEEEECCHHHHHHHHhhhCcEEEeccCC--HHHHHHHHHHHHHHcCCCCEEEEC
Confidence            789999999999997765555 4999999998888887775543    222222  222211       12478999987


Q ss_pred             Cc
Q 016265          304 IG  305 (392)
Q Consensus       304 ~G  305 (392)
                      .|
T Consensus        79 Ag   80 (252)
T d1zmta1          79 DI   80 (252)
T ss_dssp             CC
T ss_pred             Cc
Confidence            55

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=96.45  E-value=0.003  Score=55.55  Aligned_cols=73  Identities=25%  Similarity=0.359  Sum_probs=49.9

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHH----hcCCc----EEE--eCCCCc-ccc-------C
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLK----SLGAD----LAI--DYTKDN-FED-------L  293 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~----~~G~~----~vi--~~~~~~-~~~-------~  293 (392)
                      .|+++||+||++++|.+.++.... .|++|+++++++++++.+.    +.|..    ..+  |..+.+ ..+       .
T Consensus         4 ~gK~alVTGas~GIG~aia~~la~-~Ga~V~l~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~   82 (272)
T d1xkqa_           4 SNKTVIITGSSNGIGRTTAILFAQ-EGANVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTLKQ   82 (272)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCcCcHHHHHHHHHHHH-CCCEEEEEECCHHHHHHHHHHHHhcCCCCCceEEEEccCCCHHHHHHHHHHHHHH
Confidence            588999999999999998776655 4999999999988876553    33321    122  332221 111       1


Q ss_pred             CCCccEEEecCc
Q 016265          294 PEKFDVVYDAIG  305 (392)
Q Consensus       294 ~~~~D~vid~~G  305 (392)
                      -+++|+++++.|
T Consensus        83 ~g~iDilvnnAG   94 (272)
T d1xkqa_          83 FGKIDVLVNNAG   94 (272)
T ss_dssp             HSCCCEEEECCC
T ss_pred             hCCceEEEeCCc
Confidence            247899999876

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.45  E-value=0.0024  Score=56.02  Aligned_cols=44  Identities=25%  Similarity=0.354  Sum_probs=37.2

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHH
Q 016265          231 SAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLK  275 (392)
Q Consensus       231 ~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~  275 (392)
                      -+|+++||+||++|+|++.+..... .|++|+++.+++++++.+.
T Consensus        12 L~GK~alITGassGIG~aiA~~la~-~G~~Vil~~r~~~~l~~~~   55 (269)
T d1xu9a_          12 LQGKKVIVTGASKGIGREMAYHLAK-MGAHVVVTARSKETLQKVV   55 (269)
T ss_dssp             GTTCEEEESSCSSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHH
T ss_pred             cCCCEEEEeCCCcHHHHHHHHHHHH-CCCEEEEEECCHHHHHHHH
Confidence            3689999999999999997776655 4999999999998887653

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.39  E-value=0.0042  Score=55.35  Aligned_cols=43  Identities=21%  Similarity=0.389  Sum_probs=36.1

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHH
Q 016265          231 SAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFL  274 (392)
Q Consensus       231 ~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~  274 (392)
                      -+|+++||+||++++|.+.++.... .|++|++++++.++++.+
T Consensus        10 L~gKvalITGas~GIG~aia~~la~-~Ga~Vvi~~r~~~~l~~~   52 (297)
T d1yxma1          10 LQGQVAIVTGGATGIGKAIVKELLE-LGSNVVIASRKLERLKSA   52 (297)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHH-CCCEEEEEECCHHHHHHH
Confidence            4689999999999999998766655 499999999998876544

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.35  E-value=0.004  Score=54.41  Aligned_cols=42  Identities=24%  Similarity=0.253  Sum_probs=35.5

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHH
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFL  274 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~  274 (392)
                      .|+++||+||++++|.+.++.... .|++|+++++++++++.+
T Consensus         4 ~gKvalVTGas~GIG~aia~~la~-~Ga~V~~~~r~~~~l~~~   45 (264)
T d1spxa_           4 AEKVAIITGSSNGIGRATAVLFAR-EGAKVTITGRHAERLEET   45 (264)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHH
T ss_pred             CCCEEEEeCcCCHHHHHHHHHHHH-CCCEEEEEECCHHHHHHH
Confidence            588999999999999997766655 499999999998887655

>d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=96.34  E-value=0.0073  Score=52.04  Aligned_cols=90  Identities=21%  Similarity=0.339  Sum_probs=57.7

Q ss_pred             eEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeC-CcccHHHH----HhcCCcE-EE--eCCCCc-ccc-------CCCCcc
Q 016265          235 SILVLNGSGGVGSLVIQLAKQVFGASRVAATS-STRNLEFL----KSLGADL-AI--DYTKDN-FED-------LPEKFD  298 (392)
Q Consensus       235 ~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~-~~~~~~~~----~~~G~~~-vi--~~~~~~-~~~-------~~~~~D  298 (392)
                      .|||+||++++|++.++.... .|++|++.+. ++++++.+    +++|... .+  |..+.+ ..+       .-+++|
T Consensus         3 V~lITGas~GIG~a~a~~la~-~Ga~V~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD   81 (244)
T d1edoa_           3 VVVVTGASRGIGKAIALSLGK-AGCKVLVNYARSAKAAEEVSKQIEAYGGQAITFGGDVSKEADVEAMMKTAIDAWGTID   81 (244)
T ss_dssp             EEEETTCSSHHHHHHHHHHHH-TTCEEEEEESSCHHHHHHHHHHHHHHTCEEEEEECCTTSHHHHHHHHHHHHHHSSCCS
T ss_pred             EEEEeCCCcHHHHHHHHHHHH-CCCEEEEEeCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHHHHHHcCCCC
Confidence            689999999999997776655 4999988764 55554433    4456432 22  332221 111       135799


Q ss_pred             EEEecCcc----------------------------HHHHHHhc--ccCCeEEEEcC
Q 016265          299 VVYDAIGQ----------------------------CDRAVKAI--KEGGTVVALTG  325 (392)
Q Consensus       299 ~vid~~G~----------------------------~~~~~~~l--~~~G~iv~~g~  325 (392)
                      +++++.|.                            .+.+++.|  +.+|+||.++.
T Consensus        82 iLVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~IVnisS  138 (244)
T d1edoa_          82 VVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKKRKGRIINIAS  138 (244)
T ss_dssp             EEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECC
T ss_pred             ccccccccccccchhccchHHHHHHHhhhhhhHHHHHHHHHHHHHHcCCcEEEEEcC
Confidence            99999871                            13455556  45799998864

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=96.34  E-value=0.0049  Score=53.68  Aligned_cols=73  Identities=21%  Similarity=0.302  Sum_probs=49.4

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHH----hc--CCcE-EE--eCCCCc-ccc-------CC
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLK----SL--GADL-AI--DYTKDN-FED-------LP  294 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~----~~--G~~~-vi--~~~~~~-~~~-------~~  294 (392)
                      .|+++||+||++++|.+.++.... .|++|+++++++++++.+.    +.  +... .+  |..+.+ ..+       .-
T Consensus         3 ~gK~alITGas~GIG~aia~~la~-~Ga~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~~   81 (258)
T d1iy8a_           3 TDRVVLITGGGSGLGRATAVRLAA-EGAKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTERF   81 (258)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHH-CCCEEEEEECCHHHHHHHHHHHHhhCCCCeEEEEeccCCCHHHHHHHHHHHHHHh
Confidence            578999999999999997776666 4999999999988776542    22  2222 12  333321 111       12


Q ss_pred             CCccEEEecCc
Q 016265          295 EKFDVVYDAIG  305 (392)
Q Consensus       295 ~~~D~vid~~G  305 (392)
                      +++|+++++.|
T Consensus        82 G~iDiLVnnAG   92 (258)
T d1iy8a_          82 GRIDGFFNNAG   92 (258)
T ss_dssp             SCCSEEEECCC
T ss_pred             CCCCEEEECCc
Confidence            47999999876

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=96.31  E-value=0.014  Score=46.80  Aligned_cols=75  Identities=24%  Similarity=0.376  Sum_probs=52.3

Q ss_pred             HhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCe-EEEEeCCcccH-HHHHhcCCcEEEeCCCCccccCCCCccEEEec
Q 016265          226 ERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGAS-RVAATSSTRNL-EFLKSLGADLAIDYTKDNFEDLPEKFDVVYDA  303 (392)
Q Consensus       226 ~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~-vv~~~~~~~~~-~~~~~~G~~~vi~~~~~~~~~~~~~~D~vid~  303 (392)
                      +...--.+.+|||+| +|.+|.+.++.+... |++ +.++.++.+|. ++++++|.. +++++  ++.+....+|+||.|
T Consensus        17 ~~~~~l~~~~ilviG-aG~~g~~v~~~L~~~-g~~~i~v~nRt~~ka~~l~~~~~~~-~~~~~--~~~~~l~~~Divi~a   91 (159)
T d1gpja2          17 RELGSLHDKTVLVVG-AGEMGKTVAKSLVDR-GVRAVLVANRTYERAVELARDLGGE-AVRFD--ELVDHLARSDVVVSA   91 (159)
T ss_dssp             HHHSCCTTCEEEEES-CCHHHHHHHHHHHHH-CCSEEEEECSSHHHHHHHHHHHTCE-ECCGG--GHHHHHHTCSEEEEC
T ss_pred             HHhCCcccCeEEEEC-CCHHHHHHHHHHHhc-CCcEEEEEcCcHHHHHHHHHhhhcc-cccch--hHHHHhccCCEEEEe
Confidence            344445788999998 799999999988774 885 66667777775 466778753 33322  222333479999999


Q ss_pred             Cc
Q 016265          304 IG  305 (392)
Q Consensus       304 ~G  305 (392)
                      ++
T Consensus        92 ts   93 (159)
T d1gpja2          92 TA   93 (159)
T ss_dssp             CS
T ss_pred             cC
Confidence            87

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=96.30  E-value=0.011  Score=47.98  Aligned_cols=87  Identities=18%  Similarity=0.153  Sum_probs=59.0

Q ss_pred             CeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCC----------CccccCCCCccEEEec
Q 016265          234 KSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTK----------DNFEDLPEKFDVVYDA  303 (392)
Q Consensus       234 ~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~----------~~~~~~~~~~D~vid~  303 (392)
                      .+|.|+| +|.+|++.+..+.. .|.+|++.++++++.+.+++.|.........          .+..+..+.+|++|-|
T Consensus         2 k~iaIiG-aG~~G~~~A~~l~~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~aD~iii~   79 (184)
T d1bg6a2           2 KTYAVLG-LGNGGHAFAAYLAL-KGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVILIV   79 (184)
T ss_dssp             CEEEEEC-CSHHHHHHHHHHHH-TTCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCSEEEEC
T ss_pred             CEEEEEC-ccHHHHHHHHHHHH-CCCEEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHhcCCCEEEEE
Confidence            6899998 89999998888877 4999999999999998888766322211111          1122234578999999


Q ss_pred             Ccc--HH----HHHHhcccCCeEEE
Q 016265          304 IGQ--CD----RAVKAIKEGGTVVA  322 (392)
Q Consensus       304 ~G~--~~----~~~~~l~~~G~iv~  322 (392)
                      +..  .+    +....+.++-.++.
T Consensus        80 v~~~~~~~~~~~i~~~l~~~~~iv~  104 (184)
T d1bg6a2          80 VPAIHHASIAANIASYISEGQLIIL  104 (184)
T ss_dssp             SCGGGHHHHHHHHGGGCCTTCEEEE
T ss_pred             EchhHHHHHHHHhhhccCCCCEEEE
Confidence            873  33    34445555555443

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=96.30  E-value=0.0097  Score=49.83  Aligned_cols=91  Identities=15%  Similarity=0.111  Sum_probs=61.8

Q ss_pred             CCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHh----cCCc-EEEeCCCCccccCCCCccEEEec
Q 016265          229 GFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKS----LGAD-LAIDYTKDNFEDLPEKFDVVYDA  303 (392)
Q Consensus       229 ~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~----~G~~-~vi~~~~~~~~~~~~~~D~vid~  303 (392)
                      -++++++||=+| +|. |..+..+++.  |.+++.++.+++-++.+++    .+.. ..+..+..+.....+.+|+|+-.
T Consensus        34 ~l~~~~~ILDiG-cG~-G~~~~~la~~--~~~v~giD~S~~~i~~ak~~~~~~~~~~~~~~~d~~~l~~~~~~fD~I~~~  109 (226)
T d1ve3a1          34 YMKKRGKVLDLA-CGV-GGFSFLLEDY--GFEVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFI  109 (226)
T ss_dssp             SCCSCCEEEEET-CTT-SHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCEEEEEEE
T ss_pred             hcCCCCEEEEEC-CCc-chhhhhHhhh--hcccccccccccchhhhhhhhccccccccccccccccccccCcCceEEEEe
Confidence            357889999997 544 8888999973  8999999999888777754    3322 22222222222234579998854


Q ss_pred             Cc-----------cHHHHHHhcccCCeEEEE
Q 016265          304 IG-----------QCDRAVKAIKEGGTVVAL  323 (392)
Q Consensus       304 ~G-----------~~~~~~~~l~~~G~iv~~  323 (392)
                      -.           .+..+.++|+|||+++..
T Consensus       110 ~~l~~~~~~d~~~~l~~i~~~LkpgG~lii~  140 (226)
T d1ve3a1         110 DSIVHFEPLELNQVFKEVRRVLKPSGKFIMY  140 (226)
T ss_dssp             SCGGGCCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             cchhhCChhHHHHHHHHHHHHcCcCcEEEEE
Confidence            32           146788899999998654

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=96.30  E-value=0.0037  Score=54.59  Aligned_cols=73  Identities=22%  Similarity=0.264  Sum_probs=48.5

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcc-cHH----HHHhcCCcEEE---eCCCCc-ccc-------CCC
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTR-NLE----FLKSLGADLAI---DYTKDN-FED-------LPE  295 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~-~~~----~~~~~G~~~vi---~~~~~~-~~~-------~~~  295 (392)
                      .|++++|+||++++|.+.++.... .|++|+++.++.+ +++    .+++.|.+...   |..+++ ..+       .-+
T Consensus         6 ~gK~alITGas~GIG~aia~~la~-~G~~Vv~~~r~~~~~~~~~~~~~~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~~G   84 (261)
T d1geea_           6 EGKVVVITGSSTGLGKSMAIRFAT-EKAKVVVNYRSKEDEANSVLEEIKKVGGEAIAVKGDVTVESDVINLVQSAIKEFG   84 (261)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHH-TTCEEEEEESSCHHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHH-CCCEEEEEeCCcHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence            589999999999999987765555 4999999988644 333    34556654322   332221 111       124


Q ss_pred             CccEEEecCc
Q 016265          296 KFDVVYDAIG  305 (392)
Q Consensus       296 ~~D~vid~~G  305 (392)
                      ++|+++++.|
T Consensus        85 ~iDiLVnnAG   94 (261)
T d1geea_          85 KLDVMINNAG   94 (261)
T ss_dssp             CCCEEEECCC
T ss_pred             CCCEeeccce
Confidence            7999999987

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=96.29  E-value=0.0058  Score=50.30  Aligned_cols=94  Identities=11%  Similarity=0.076  Sum_probs=63.6

Q ss_pred             HhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHH----hcCCc-E--EEeCCCCccccCCCCcc
Q 016265          226 ERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLK----SLGAD-L--AIDYTKDNFEDLPEKFD  298 (392)
Q Consensus       226 ~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~----~~G~~-~--vi~~~~~~~~~~~~~~D  298 (392)
                      ...++++|++||=+| + |.|..++.+|+.  +.+|+.++.+++.++.++    ++|.. .  ++..+..+.....+.+|
T Consensus        27 ~~l~~~~g~~VLDiG-c-GsG~~s~~lA~~--~~~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~~~~~~~~~D  102 (186)
T d1l3ia_          27 CLAEPGKNDVAVDVG-C-GTGGVTLELAGR--VRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKIPDID  102 (186)
T ss_dssp             HHHCCCTTCEEEEES-C-TTSHHHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTSCCEE
T ss_pred             HhcCCCCCCEEEEEE-C-CeEccccccccc--ceEEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchhhcccccCCcC
Confidence            456889999999887 3 446777888864  678999999988877764    45642 2  23222222222235799


Q ss_pred             EEEecCc--c----HHHHHHhcccCCeEEEE
Q 016265          299 VVYDAIG--Q----CDRAVKAIKEGGTVVAL  323 (392)
Q Consensus       299 ~vid~~G--~----~~~~~~~l~~~G~iv~~  323 (392)
                      +|+-.-+  .    ++.+.+.|+|+|+++..
T Consensus       103 ~v~~~~~~~~~~~~~~~~~~~LkpgG~lvi~  133 (186)
T d1l3ia_         103 IAVVGGSGGELQEILRIIKDKLKPGGRIIVT  133 (186)
T ss_dssp             EEEESCCTTCHHHHHHHHHHTEEEEEEEEEE
T ss_pred             EEEEeCccccchHHHHHHHHHhCcCCEEEEE
Confidence            8886533  2    47788899999998754

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.24  E-value=0.0044  Score=52.81  Aligned_cols=93  Identities=13%  Similarity=0.064  Sum_probs=63.0

Q ss_pred             cCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcE-------------EEeCCC-------
Q 016265          228 TGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADL-------------AIDYTK-------  287 (392)
Q Consensus       228 ~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~-------------vi~~~~-------  287 (392)
                      ....+|.+||..| +| .|..+..+|+.  |++|+.++.|+.-.+.+++.....             ......       
T Consensus        41 l~~~~~~rvLd~G-CG-~G~~a~~LA~~--G~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  116 (229)
T d2bzga1          41 LKGKSGLRVFFPL-CG-KAVEMKWFADR--GHSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYC  116 (229)
T ss_dssp             HTTCCSCEEEETT-CT-TCTHHHHHHHT--TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEE
T ss_pred             cCCCCCCEEEEeC-CC-CcHHHHHHHhC--CCcEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEEEEE
Confidence            4578899999997 54 49999999973  999999999998888776432111             110000       


Q ss_pred             Ccc----ccCCCCccEEEecCc--c---------HHHHHHhcccCCeEEEEc
Q 016265          288 DNF----EDLPEKFDVVYDAIG--Q---------CDRAVKAIKEGGTVVALT  324 (392)
Q Consensus       288 ~~~----~~~~~~~D~vid~~G--~---------~~~~~~~l~~~G~iv~~g  324 (392)
                      .++    ......+|+|+++.-  .         +..+.++|+|||+++...
T Consensus       117 ~d~~~l~~~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~LkpgG~~~l~~  168 (229)
T d2bzga1         117 CSIFDLPRTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKKFQYLLCV  168 (229)
T ss_dssp             SCGGGGGGSCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             cchhhccccccCceeEEEEEEEEEeccchhhHHHHHHHHhhcCCcceEEEEE
Confidence            011    112346899998743  1         367889999999976553

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.14  E-value=0.0084  Score=53.94  Aligned_cols=98  Identities=21%  Similarity=0.250  Sum_probs=63.7

Q ss_pred             HHHhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcC--CeEEEEeCCcccHHHHHh----cC-----------CcEE--Ee
Q 016265          224 GLERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFG--ASRVAATSSTRNLEFLKS----LG-----------ADLA--ID  284 (392)
Q Consensus       224 al~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G--~~vv~~~~~~~~~~~~~~----~G-----------~~~v--i~  284 (392)
                      .+...+++||++||=.| +| .|.+++.+|+.+ |  .+|+.++.+++..+.+++    ++           .+.+  ++
T Consensus        90 Il~~l~i~pG~rVLE~G-tG-sG~lt~~LAr~v-g~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~  166 (324)
T d2b25a1          90 ILSMMDINPGDTVLEAG-SG-SGGMSLFLSKAV-GSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIH  166 (324)
T ss_dssp             HHHHHTCCTTCEEEEEC-CT-TSHHHHHHHHHH-CTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEE
T ss_pred             HHHHhCCCCCCEEEEec-cc-ccHHHHHHHHHh-CCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEEe
Confidence            44677899999999987 54 499999999986 5  478889999888777653    11           1111  11


Q ss_pred             CCCCcc-cc-CCCCccEEEecCc----cHHHHHHhcccCCeEEEEc
Q 016265          285 YTKDNF-ED-LPEKFDVVYDAIG----QCDRAVKAIKEGGTVVALT  324 (392)
Q Consensus       285 ~~~~~~-~~-~~~~~D~vid~~G----~~~~~~~~l~~~G~iv~~g  324 (392)
                      .+-.++ .. ....||.||--..    .++.+.++|+|||+++.+.
T Consensus       167 ~di~~~~~~~~~~~fD~V~LD~p~P~~~l~~~~~~LKpGG~lv~~~  212 (324)
T d2b25a1         167 KDISGATEDIKSLTFDAVALDMLNPHVTLPVFYPHLKHGGVCAVYV  212 (324)
T ss_dssp             SCTTCCC-------EEEEEECSSSTTTTHHHHGGGEEEEEEEEEEE
T ss_pred             cchhhcccccCCCCcceEeecCcCHHHHHHHHHHhccCCCEEEEEe
Confidence            111111 11 1235787763222    4689999999999998774

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=96.13  E-value=0.0036  Score=50.96  Aligned_cols=95  Identities=18%  Similarity=0.211  Sum_probs=59.5

Q ss_pred             HHHhcC-CCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHH-hcC---CcEEEeCCCCccccCCCCcc
Q 016265          224 GLERTG-FSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLK-SLG---ADLAIDYTKDNFEDLPEKFD  298 (392)
Q Consensus       224 al~~~~-~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~-~~G---~~~vi~~~~~~~~~~~~~~D  298 (392)
                      +|+..+ ..+|.+|+|+| +|+.+.+++..+.. .+.+++++.++.+|.+.+. .++   ....+..+.    .....+|
T Consensus         8 ~l~~~~~~~~~k~vlIlG-aGGaarai~~aL~~-~~~~i~I~nR~~~~a~~l~~~~~~~~~~~~~~~~~----~~~~~~d   81 (171)
T d1p77a1           8 DLQRLNWLRPNQHVLILG-AGGATKGVLLPLLQ-AQQNIVLANRTFSKTKELAERFQPYGNIQAVSMDS----IPLQTYD   81 (171)
T ss_dssp             HHHHTTCCCTTCEEEEEC-CSHHHHTTHHHHHH-TTCEEEEEESSHHHHHHHHHHHGGGSCEEEEEGGG----CCCSCCS
T ss_pred             HHHHcCCCCCCCEEEEEC-CcHHHHHHHHHHcc-cCceeeeccchHHHHHHHHHHHhhccccchhhhcc----ccccccc
Confidence            454433 45788999998 89999999887776 5778888889988866553 333   212222111    1235789


Q ss_pred             EEEecCc-cH-----HHHHHhcccCCeEEEEc
Q 016265          299 VVYDAIG-QC-----DRAVKAIKEGGTVVALT  324 (392)
Q Consensus       299 ~vid~~G-~~-----~~~~~~l~~~G~iv~~g  324 (392)
                      ++|+|+. .+     ......++++..++.+.
T Consensus        82 iiIN~tp~g~~~~~~~~~~~~~~~~~~~~D~v  113 (171)
T d1p77a1          82 LVINATSAGLSGGTASVDAEILKLGSAFYDMQ  113 (171)
T ss_dssp             EEEECCCC-------CCCHHHHHHCSCEEESC
T ss_pred             eeeecccccccccccchhhhhhcccceeeeee
Confidence            9999976 21     11223455666666554

>d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Bacterial sepiapterin reductase
species: Chlorobium tepidum [TaxId: 1097]

Probab=96.10  E-value=0.011  Score=50.69  Aligned_cols=70  Identities=17%  Similarity=0.240  Sum_probs=45.3

Q ss_pred             eEEEEcCCCcHHHHHHHHHHHhcCCe-------EEEEeCCcccHHHH----HhcCCcE-EE--eCCCCc-ccc-------
Q 016265          235 SILVLNGSGGVGSLVIQLAKQVFGAS-------RVAATSSTRNLEFL----KSLGADL-AI--DYTKDN-FED-------  292 (392)
Q Consensus       235 ~VlI~Ga~G~vG~~aiqlak~~~G~~-------vv~~~~~~~~~~~~----~~~G~~~-vi--~~~~~~-~~~-------  292 (392)
                      .|||+||++++|.+.+..... .|++       ++...+++++++.+    ++.|... .+  |..+.. ..+       
T Consensus         3 VvlITGas~GIG~aia~~la~-~G~~~~~~~~~v~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~   81 (240)
T d2bd0a1           3 ILLITGAGKGIGRAIALEFAR-AARHHPDFEPVLVLSSRTAADLEKISLECRAEGALTDTITADISDMADVRRLTTHIVE   81 (240)
T ss_dssp             EEEEETTTSHHHHHHHHHHHH-HTTTCTTCCEEEEEEESCHHHHHHHHHHHHTTTCEEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             EEEEccCCCHHHHHHHHHHHH-hCccccccCcEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHH
Confidence            479999999999987665444 3887       77778888776654    3345432 22  333221 111       


Q ss_pred             CCCCccEEEecCc
Q 016265          293 LPEKFDVVYDAIG  305 (392)
Q Consensus       293 ~~~~~D~vid~~G  305 (392)
                      .-+++|+++++.|
T Consensus        82 ~~g~iDilvnnAg   94 (240)
T d2bd0a1          82 RYGHIDCLVNNAG   94 (240)
T ss_dssp             HTSCCSEEEECCC
T ss_pred             HcCCcceeecccc
Confidence            1347999999977

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=96.10  E-value=0.0085  Score=51.94  Aligned_cols=70  Identities=17%  Similarity=0.230  Sum_probs=47.7

Q ss_pred             eEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHH----HhcCCcEE-E--eCCCCc-ccc-------CCCCccE
Q 016265          235 SILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFL----KSLGADLA-I--DYTKDN-FED-------LPEKFDV  299 (392)
Q Consensus       235 ~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~----~~~G~~~v-i--~~~~~~-~~~-------~~~~~D~  299 (392)
                      .+||+||++++|++.+..... .|++|+++++++++++.+    ++.|.... +  |..+.+ ..+       .-+++|+
T Consensus         3 ValITGas~GIG~aia~~la~-~Ga~V~~~~r~~~~l~~~~~~i~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iDi   81 (255)
T d1gega_           3 VALVTGAGQGIGKAIALRLVK-DGFAVAIADYNDATAKAVASEINQAGGHAVAVKVDVSDRDQVFAAVEQARKTLGGFDV   81 (255)
T ss_dssp             EEEEETTTSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHTTCCCE
T ss_pred             EEEEcCCccHHHHHHHHHHHH-CCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHHhCCccE
Confidence            469999999999997766555 499999999998886654    44564432 2  332221 111       1347999


Q ss_pred             EEecCc
Q 016265          300 VYDAIG  305 (392)
Q Consensus       300 vid~~G  305 (392)
                      ++++.|
T Consensus        82 lVnnAG   87 (255)
T d1gega_          82 IVNNAG   87 (255)
T ss_dssp             EEECCC
T ss_pred             EEeccc
Confidence            999877

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=96.00  E-value=0.015  Score=49.37  Aligned_cols=98  Identities=23%  Similarity=0.273  Sum_probs=66.7

Q ss_pred             HHHhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhc-CCeEEEEeCCcccHHHHHhc----CCcEEEeCCCCc---cccCCC
Q 016265          224 GLERTGFSAGKSILVLNGSGGVGSLVIQLAKQVF-GASRVAATSSTRNLEFLKSL----GADLAIDYTKDN---FEDLPE  295 (392)
Q Consensus       224 al~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~-G~~vv~~~~~~~~~~~~~~~----G~~~vi~~~~~~---~~~~~~  295 (392)
                      +++...++||++||=+| +| .|..+..+|+.+. ..+|++++.++..++.+++.    +....+..+...   +.....
T Consensus        65 ~l~~l~i~pG~~VLDlG-aG-sG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~~~~~~i~~d~~~~~~~~~~~~  142 (227)
T d1g8aa_          65 GLKNFPIKPGKSVLYLG-IA-SGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVP  142 (227)
T ss_dssp             TCCCCCCCTTCEEEEET-TT-STTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCC
T ss_pred             cccccccCCCCEEEEec-cC-CCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhcCCceEEEEECCCccccccccc
Confidence            34667899999999997 43 4888999999862 25799999998887776542    322223222222   222345


Q ss_pred             CccEEEecCc-------cHHHHHHhcccCCeEEEE
Q 016265          296 KFDVVYDAIG-------QCDRAVKAIKEGGTVVAL  323 (392)
Q Consensus       296 ~~D~vid~~G-------~~~~~~~~l~~~G~iv~~  323 (392)
                      .+|+++....       .+..+.+.|++||+++..
T Consensus       143 ~vD~i~~d~~~~~~~~~~l~~~~~~LkpgG~lvi~  177 (227)
T d1g8aa_         143 KVDVIFEDVAQPTQAKILIDNAEVYLKRGGYGMIA  177 (227)
T ss_dssp             CEEEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ceEEEEEEccccchHHHHHHHHHHhcccCCeEEEE
Confidence            7898886543       147788899999998765

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=95.99  E-value=0.014  Score=49.82  Aligned_cols=92  Identities=17%  Similarity=0.234  Sum_probs=62.9

Q ss_pred             HhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhc----CCc-EEEeCCCCccccCCCCccEE
Q 016265          226 ERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSL----GAD-LAIDYTKDNFEDLPEKFDVV  300 (392)
Q Consensus       226 ~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~----G~~-~vi~~~~~~~~~~~~~~D~v  300 (392)
                      ......++.+||=+| +|. |..+..+++.  |++++.++.+++-++.+++.    +.. .++..+-.++ ...+.||+|
T Consensus        35 ~~~~~~~~~~iLDiG-cGt-G~~~~~l~~~--~~~v~gvD~s~~mi~~a~~~~~~~~~~i~~~~~d~~~l-~~~~~fD~I  109 (251)
T d1wzna1          35 KEDAKREVRRVLDLA-CGT-GIPTLELAER--GYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEI-AFKNEFDAV  109 (251)
T ss_dssp             HHTCSSCCCEEEEET-CTT-CHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGC-CCCSCEEEE
T ss_pred             HHhcCCCCCEEEEeC-CCC-Cccchhhccc--ceEEEEEeeccccccccccccccccccchheehhhhhc-ccccccchH
Confidence            345667778999997 665 8888989974  89999999998877776543    332 2232222222 123579999


Q ss_pred             EecCcc------------HHHHHHhcccCCeEEE
Q 016265          301 YDAIGQ------------CDRAVKAIKEGGTVVA  322 (392)
Q Consensus       301 id~~G~------------~~~~~~~l~~~G~iv~  322 (392)
                      +...+.            ++.+.++|+|||+++.
T Consensus       110 ~~~~~~~~~~~~~~~~~~L~~~~~~LkpgG~lii  143 (251)
T d1wzna1         110 TMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFIT  143 (251)
T ss_dssp             EECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred             hhhhhhhhcCChHHHHHHHHHHHHHcCCCcEEEE
Confidence            875331            4678889999999875

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.96  E-value=0.034  Score=41.42  Aligned_cols=88  Identities=13%  Similarity=0.113  Sum_probs=58.8

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCc--ccHHHHHhcCCcEEE-eCCCCccccCCCCccEEEecCcc--
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSST--RNLEFLKSLGADLAI-DYTKDNFEDLPEKFDVVYDAIGQ--  306 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~--~~~~~~~~~G~~~vi-~~~~~~~~~~~~~~D~vid~~G~--  306 (392)
                      .|.+|||.| +|.+|..-++.+.. .|+++++++...  +-.+++++-+....- .+...    ...++++|+-+++.  
T Consensus        11 ~~k~vlVvG-~G~va~~ka~~ll~-~ga~v~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~----dl~~~~lv~~at~d~~   84 (113)
T d1pjqa1          11 RDRDCLIVG-GGDVAERKARLLLE-AGARLTVNALTFIPQFTVWANEGMLTLVEGPFDET----LLDSCWLAIAATDDDT   84 (113)
T ss_dssp             BTCEEEEEC-CSHHHHHHHHHHHH-TTBEEEEEESSCCHHHHHHHTTTSCEEEESSCCGG----GGTTCSEEEECCSCHH
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHH-CCCeEEEEeccCChHHHHHHhcCCceeeccCCCHH----HhCCCcEEeecCCCHH
Confidence            478999998 99999999988887 599988887532  223333332222221 12211    23578999999884  


Q ss_pred             H-HHHHHhcccCCeEEEEcC
Q 016265          307 C-DRAVKAIKEGGTVVALTG  325 (392)
Q Consensus       307 ~-~~~~~~l~~~G~iv~~g~  325 (392)
                      + ....+..++.|.+|.+..
T Consensus        85 ~n~~i~~~a~~~~ilVNv~D  104 (113)
T d1pjqa1          85 VNQRVSDAAESRRIFCNVVD  104 (113)
T ss_dssp             HHHHHHHHHHHTTCEEEETT
T ss_pred             HHHHHHHHHHHcCCEEEeCC
Confidence            3 466677888899887654

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=95.95  E-value=0.022  Score=45.54  Aligned_cols=83  Identities=12%  Similarity=0.089  Sum_probs=58.4

Q ss_pred             eEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCC-cEEEeCCCCccccCCCCccEEEecCc--cH----
Q 016265          235 SILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGA-DLAIDYTKDNFEDLPEKFDVVYDAIG--QC----  307 (392)
Q Consensus       235 ~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~-~~vi~~~~~~~~~~~~~~D~vid~~G--~~----  307 (392)
                      +|.|+| +|-+|...+...+. .|.+|++.++++++.+.+++.|. +...+.     .+..+..|+||-|+.  ..    
T Consensus         2 kI~iIG-~G~mG~~lA~~l~~-~g~~V~~~d~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~DiIilavp~~~~~~vl   74 (165)
T d2f1ka2           2 KIGVVG-LGLIGASLAGDLRR-RGHYLIGVSRQQSTCEKAVERQLVDEAGQD-----LSLLQTAKIIFLCTPIQLILPTL   74 (165)
T ss_dssp             EEEEEC-CSHHHHHHHHHHHH-TTCEEEEECSCHHHHHHHHHTTSCSEEESC-----GGGGTTCSEEEECSCHHHHHHHH
T ss_pred             EEEEEe-ecHHHHHHHHHHHH-CCCEEEEEECCchHHHHHHHhhccceeeee-----cccccccccccccCcHhhhhhhh
Confidence            588998 99999887777776 59999999999999999998884 443322     123357899999985  23    


Q ss_pred             HHHHHhcccCCeEEEEc
Q 016265          308 DRAVKAIKEGGTVVALT  324 (392)
Q Consensus       308 ~~~~~~l~~~G~iv~~g  324 (392)
                      +.....+.++-.++.++
T Consensus        75 ~~l~~~l~~~~iv~~~~   91 (165)
T d2f1ka2          75 EKLIPHLSPTAIVTDVA   91 (165)
T ss_dssp             HHHGGGSCTTCEEEECC
T ss_pred             hhhhhhcccccceeecc
Confidence            44444455555555554

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=95.92  E-value=0.021  Score=45.48  Aligned_cols=91  Identities=15%  Similarity=0.104  Sum_probs=69.6

Q ss_pred             CCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCCccccCCCCccEEEecCcc--
Q 016265          229 GFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFEDLPEKFDVVYDAIGQ--  306 (392)
Q Consensus       229 ~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~~~~~~~D~vid~~G~--  306 (392)
                      -.-.|++++|.| -|-+|.-.++-+|.+ |++|+++...+-+.-.+.--|.. +     ....+..+..|+++-++|.  
T Consensus        19 ~~laGk~vvV~G-YG~vGrG~A~~~rg~-Ga~V~V~E~DPi~alqA~mdGf~-v-----~~~~~a~~~aDi~vTaTGn~~   90 (163)
T d1v8ba1          19 FLISGKIVVICG-YGDVGKGCASSMKGL-GARVYITEIDPICAIQAVMEGFN-V-----VTLDEIVDKGDFFITCTGNVD   90 (163)
T ss_dssp             CCCTTSEEEEEC-CSHHHHHHHHHHHHH-TCEEEEECSCHHHHHHHHTTTCE-E-----CCHHHHTTTCSEEEECCSSSS
T ss_pred             ceecCCEEEEec-ccccchhHHHHHHhC-CCEEEEEecCchhhHHHHhcCCc-c-----CchhHccccCcEEEEcCCCCc
Confidence            356899999998 999999999999995 99999999888664444333432 1     1233445678999999994  


Q ss_pred             --HHHHHHhcccCCeEEEEcCCC
Q 016265          307 --CDRAVKAIKEGGTVVALTGAV  327 (392)
Q Consensus       307 --~~~~~~~l~~~G~iv~~g~~~  327 (392)
                        ...-++.|+.+..+...|...
T Consensus        91 vI~~~h~~~MKdgaIl~N~GHfd  113 (163)
T d1v8ba1          91 VIKLEHLLKMKNNAVVGNIGHFD  113 (163)
T ss_dssp             SBCHHHHTTCCTTCEEEECSSTT
T ss_pred             cccHHHHHHhhCCeEEEeccccc
Confidence              267889999999888777544

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.91  E-value=0.0061  Score=52.49  Aligned_cols=48  Identities=25%  Similarity=0.279  Sum_probs=39.0

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHH-HhcCCc
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFL-KSLGAD  280 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~-~~~G~~  280 (392)
                      +|+++||+||++++|.+.++-... .|++|+++++++++++.+ ++++..
T Consensus         4 kGKvalITGas~GIG~aia~~la~-~G~~V~~~~r~~~~~~~~~~~l~~~   52 (248)
T d2o23a1           4 KGLVAVITGGASGLGLATAERLVG-QGASAVLLDLPNSGGEAQAKKLGNN   52 (248)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHH-TTCEEEEEECTTSSHHHHHHHHCTT
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHH-CCCEEEEEeCChHHHHHHHHHhCCC
Confidence            689999999999999997776666 499999999988877655 466643

>d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative carbonyl reductase sniffer
species: Caenorhabditis elegans [TaxId: 6239]

Probab=95.88  E-value=0.0078  Score=51.94  Aligned_cols=72  Identities=17%  Similarity=0.253  Sum_probs=47.3

Q ss_pred             CCeEEEEcCCCcHHHHHHHHHHHhcCC--eEEEEeCCcccHHHHHhcCCc--EEE--eCCCCc-ccc----C-----CCC
Q 016265          233 GKSILVLNGSGGVGSLVIQLAKQVFGA--SRVAATSSTRNLEFLKSLGAD--LAI--DYTKDN-FED----L-----PEK  296 (392)
Q Consensus       233 g~~VlI~Ga~G~vG~~aiqlak~~~G~--~vv~~~~~~~~~~~~~~~G~~--~vi--~~~~~~-~~~----~-----~~~  296 (392)
                      .++|||+||++|+|.+.++.... .|+  .|+++.++.++++.+++....  +++  |..+.. ..+    .     ..+
T Consensus         3 ~KtilITGassGIG~a~a~~la~-~G~~~~Vi~~~R~~~~~~~l~~~~~~~~~~~~~Dvs~~~~v~~~~~~i~~~~~~~~   81 (250)
T d1yo6a1           3 PGSVVVTGANRGIGLGLVQQLVK-DKNIRHIIATARDVEKATELKSIKDSRVHVLPLTVTCDKSLDTFVSKVGEIVGSDG   81 (250)
T ss_dssp             CSEEEESSCSSHHHHHHHHHHHT-CTTCCEEEEEESSGGGCHHHHTCCCTTEEEEECCTTCHHHHHHHHHHHHHHHGGGC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHH-CCCCCEEEEEeCCHHHHHHHHHhhCCceEEEEEecCCHHHHHHHHHHHHHHhCCCC
Confidence            37899999999999997765444 376  577778888888887765322  223  332221 111    1     125


Q ss_pred             ccEEEecCc
Q 016265          297 FDVVYDAIG  305 (392)
Q Consensus       297 ~D~vid~~G  305 (392)
                      +|++|++.|
T Consensus        82 idilinnAG   90 (250)
T d1yo6a1          82 LSLLINNAG   90 (250)
T ss_dssp             CCEEEECCC
T ss_pred             eEEEEEcCc
Confidence            899999987

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=95.72  E-value=0.029  Score=46.95  Aligned_cols=96  Identities=24%  Similarity=0.257  Sum_probs=62.7

Q ss_pred             HhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHH----hcCCcEEEeCCCCcccc---CCCCcc
Q 016265          226 ERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLK----SLGADLAIDYTKDNFED---LPEKFD  298 (392)
Q Consensus       226 ~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~----~~G~~~vi~~~~~~~~~---~~~~~D  298 (392)
                      .+..++||++||=+| +| .|..+..+++.....+|+.++.++..++.++    +.+-...+..+......   ....+|
T Consensus        50 ~~l~lkpg~~VLDlG-cG-~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~vd  127 (209)
T d1nt2a_          50 HRLKLRGDERVLYLG-AA-SGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIVEKVD  127 (209)
T ss_dssp             CCCCCCSSCEEEEET-CT-TSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTCCCEE
T ss_pred             ccCCCCCCCEEEEeC-Cc-CCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhccCCceEEEeeccCccccccccceEE
Confidence            356899999999998 43 3667888888753357888999988777663    33322222222222211   234578


Q ss_pred             EEEecCc-------cHHHHHHhcccCCeEEEE
Q 016265          299 VVYDAIG-------QCDRAVKAIKEGGTVVAL  323 (392)
Q Consensus       299 ~vid~~G-------~~~~~~~~l~~~G~iv~~  323 (392)
                      +++....       .+..+.+.|++||+++..
T Consensus       128 ~v~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~  159 (209)
T d1nt2a_         128 LIYQDIAQKNQIEILKANAEFFLKEKGEVVIM  159 (209)
T ss_dssp             EEEECCCSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             EEEecccChhhHHHHHHHHHHHhccCCeEEEE
Confidence            8876543       146778899999998765

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=95.66  E-value=0.096  Score=39.89  Aligned_cols=69  Identities=20%  Similarity=0.175  Sum_probs=51.2

Q ss_pred             eEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHH-hcCCcEEEeCC--CCc-cccC-CCCccEEEecCcc
Q 016265          235 SILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLK-SLGADLAIDYT--KDN-FEDL-PEKFDVVYDAIGQ  306 (392)
Q Consensus       235 ~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~-~~G~~~vi~~~--~~~-~~~~-~~~~D~vid~~G~  306 (392)
                      .|+|.| .|.+|...++.+.. .|..+++++.++++.+.++ ++|.. ++..+  +.. +.+. .+.+|.++-+++.
T Consensus         2 ~IvI~G-~G~~G~~la~~L~~-~g~~v~vid~d~~~~~~~~~~~~~~-vi~Gd~~~~~~l~~~~i~~a~~vv~~t~~   75 (132)
T d1lssa_           2 YIIIAG-IGRVGYTLAKSLSE-KGHDIVLIDIDKDICKKASAEIDAL-VINGDCTKIKTLEDAGIEDADMYIAVTGK   75 (132)
T ss_dssp             EEEEEC-CSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHHCSSE-EEESCTTSHHHHHHTTTTTCSEEEECCSC
T ss_pred             EEEEEC-CCHHHHHHHHHHHH-CCCCcceecCChhhhhhhhhhhhhh-hccCcccchhhhhhcChhhhhhhcccCCc
Confidence            689998 79999999988887 5999999999999988776 45654 44332  222 2222 3578999998874

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.63  E-value=0.0049  Score=52.99  Aligned_cols=69  Identities=19%  Similarity=0.274  Sum_probs=46.8

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCCc-ccc-------CCCCccEEEec
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDN-FED-------LPEKFDVVYDA  303 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~-~~~-------~~~~~D~vid~  303 (392)
                      .|+++||+||++++|.+.++.... .|++|+++.+++++.+.+.    ....|..+.+ ..+       .-+++|+++++
T Consensus         6 ~gK~~lITGas~GIG~aia~~la~-~Ga~V~~~~r~~~~~~~~~----~~~~Dv~~~~~v~~~~~~~~~~~g~iDiLVnn   80 (237)
T d1uzma1           6 VSRSVLVTGGNRGIGLAIAQRLAA-DGHKVAVTHRGSGAPKGLF----GVEVDVTDSDAVDRAFTAVEEHQGPVEVLVSN   80 (237)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHH-TTCEEEEEESSSCCCTTSE----EEECCTTCHHHHHHHHHHHHHHHSSCSEEEEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHH-CCCEEEEEECCcchhcCce----EEEEecCCHHHHHHHHHHHHHhcCCceEEEee
Confidence            689999999999999998877666 4999999998776544221    1122332221 111       12468999988


Q ss_pred             Cc
Q 016265          304 IG  305 (392)
Q Consensus       304 ~G  305 (392)
                      .|
T Consensus        81 AG   82 (237)
T d1uzma1          81 AG   82 (237)
T ss_dssp             CS
T ss_pred             ec
Confidence            77

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=95.62  E-value=0.048  Score=43.55  Aligned_cols=86  Identities=14%  Similarity=0.090  Sum_probs=60.2

Q ss_pred             eEEEEcCCCcHHHHHHHHHHHhcCC--eEEEEeCCcccHHHHHhcCC-cEEEeCCCCccccCCCCccEEEecCc--c---
Q 016265          235 SILVLNGSGGVGSLVIQLAKQVFGA--SRVAATSSTRNLEFLKSLGA-DLAIDYTKDNFEDLPEKFDVVYDAIG--Q---  306 (392)
Q Consensus       235 ~VlI~Ga~G~vG~~aiqlak~~~G~--~vv~~~~~~~~~~~~~~~G~-~~vi~~~~~~~~~~~~~~D~vid~~G--~---  306 (392)
                      +|+|+| .|-+|...+..++. .|.  ++++.+++++.++.+++.|. +.......   .......|+|+-|+.  .   
T Consensus         3 ~I~IIG-~G~mG~sla~~L~~-~g~~~~I~~~D~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~dlIila~p~~~~~~   77 (171)
T d2g5ca2           3 NVLIVG-VGFMGGSFAKSLRR-SGFKGKIYGYDINPESISKAVDLGIIDEGTTSIA---KVEDFSPDFVMLSSPVRTFRE   77 (171)
T ss_dssp             EEEEES-CSHHHHHHHHHHHH-TTCCSEEEEECSCHHHHHHHHHTTSCSEEESCGG---GGGGTCCSEEEECSCHHHHHH
T ss_pred             EEEEEc-cCHHHHHHHHHHHh-cCCCeEEEEEECChHHHHHHHHhhcchhhhhhhh---hhhccccccccccCCchhhhh
Confidence            689998 99999988877776 464  67788999999999999885 33333211   111236799999986  2   


Q ss_pred             -HHHHHHhcccCCeEEEEcC
Q 016265          307 -CDRAVKAIKEGGTVVALTG  325 (392)
Q Consensus       307 -~~~~~~~l~~~G~iv~~g~  325 (392)
                       ++.....+.++-.++.++.
T Consensus        78 vl~~l~~~~~~~~ii~d~~s   97 (171)
T d2g5ca2          78 IAKKLSYILSEDATVTDQGS   97 (171)
T ss_dssp             HHHHHHHHSCTTCEEEECCS
T ss_pred             hhhhhhcccccccccccccc
Confidence             3555666777777766654

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.62  E-value=0.0078  Score=55.81  Aligned_cols=100  Identities=17%  Similarity=0.284  Sum_probs=66.5

Q ss_pred             HHHHHHhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCC-eEEEEeCCcccHHHHHhc-----------CC---cEEEeC
Q 016265          221 AYEGLERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGA-SRVAATSSTRNLEFLKSL-----------GA---DLAIDY  285 (392)
Q Consensus       221 a~~al~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~-~vv~~~~~~~~~~~~~~~-----------G~---~~vi~~  285 (392)
                      ..+.++..++++|++|+=+|  +|+|..+.++|+. +|+ +++.++.++...+.+++.           |.   ...+..
T Consensus       205 i~~Il~~l~Lkpgd~fLDLG--CG~G~~vl~aA~~-~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~  281 (406)
T d1u2za_         205 LSDVYQQCQLKKGDTFMDLG--SGVGNCVVQAALE-CGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSL  281 (406)
T ss_dssp             HHHHHHHTTCCTTCEEEEES--CTTSHHHHHHHHH-HCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEE
T ss_pred             HHHHHHHhCCCCCCEEEeCC--CCCcHHHHHHHHH-cCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeee
Confidence            56677889999999988886  5779999999998 476 788899888776666431           11   011111


Q ss_pred             CC-----CccccCCCCccEEEecCc--------cHHHHHHhcccCCeEEEE
Q 016265          286 TK-----DNFEDLPEKFDVVYDAIG--------QCDRAVKAIKEGGTVVAL  323 (392)
Q Consensus       286 ~~-----~~~~~~~~~~D~vid~~G--------~~~~~~~~l~~~G~iv~~  323 (392)
                      ..     +.+......+|+++-..-        .+..+++.|+|||+||..
T Consensus       282 ~~~f~~~~~~d~~~~~adVV~inn~~f~~~l~~~L~ei~r~LKPGGrIVs~  332 (406)
T d1u2za_         282 KKSFVDNNRVAELIPQCDVILVNNFLFDEDLNKKVEKILQTAKVGCKIISL  332 (406)
T ss_dssp             SSCSTTCHHHHHHGGGCSEEEECCTTCCHHHHHHHHHHHTTCCTTCEEEES
T ss_pred             eechhhccccccccccceEEEEecccCchHHHHHHHHHHHhcCCCcEEEEe
Confidence            11     111112235788874321        246788899999999875

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=95.61  E-value=0.02  Score=49.26  Aligned_cols=74  Identities=22%  Similarity=0.245  Sum_probs=47.9

Q ss_pred             CCCCeEEEEcCCC--cHHHHHHHHHHHhcCCeEEEEeCCcccHHHHH----hcCCcEEEeCCCCccc----------cCC
Q 016265          231 SAGKSILVLNGSG--GVGSLVIQLAKQVFGASRVAATSSTRNLEFLK----SLGADLAIDYTKDNFE----------DLP  294 (392)
Q Consensus       231 ~~g~~VlI~Ga~G--~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~----~~G~~~vi~~~~~~~~----------~~~  294 (392)
                      -.|+++||+||+|  ++|.+.+..... .|++|+++.++++..+.++    ..|....+..+..+..          +..
T Consensus         3 L~gK~~lITGass~~GIG~aiA~~l~~-~G~~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (258)
T d1qsga_           3 LSGKRILVTGVASKLSIAYGIAQAMHR-EGAELAFTYQNDKLKGRVEEFAAQLGSDIVLQCDVAEDASIDTMFAELGKVW   81 (258)
T ss_dssp             TTTCEEEECCCCSTTSHHHHHHHHHHH-TTCEEEEEESSTTTHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHTTC
T ss_pred             CCCCEEEEECCCCchhHHHHHHHHHHH-cCCEEEEEeCCHHHHHHHHHHHhhcCCcceeecccchHHHHHHHHHHhhhcc
Confidence            4689999999988  788876665555 4999999998876655443    3444444433322211          123


Q ss_pred             CCccEEEecCc
Q 016265          295 EKFDVVYDAIG  305 (392)
Q Consensus       295 ~~~D~vid~~G  305 (392)
                      ...|+++++.+
T Consensus        82 ~~~d~~v~~a~   92 (258)
T d1qsga_          82 PKFDGFVHSIG   92 (258)
T ss_dssp             SSEEEEEECCC
T ss_pred             cccceEEEeec
Confidence            46788888754

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=95.56  E-value=0.02  Score=49.78  Aligned_cols=74  Identities=14%  Similarity=0.108  Sum_probs=47.4

Q ss_pred             CCCCeEEEEcCCC--cHHHHHHHHHHHhcCCeEEEEeCCcccHHHH---HhcC-CcEEE--eCCCCc-c-------ccCC
Q 016265          231 SAGKSILVLNGSG--GVGSLVIQLAKQVFGASRVAATSSTRNLEFL---KSLG-ADLAI--DYTKDN-F-------EDLP  294 (392)
Q Consensus       231 ~~g~~VlI~Ga~G--~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~---~~~G-~~~vi--~~~~~~-~-------~~~~  294 (392)
                      -+|+++||+||+|  ++|.+.++.+.. .|++|+++.++++..+.+   .+.+ ...++  |...+. .       .+..
T Consensus         3 L~gK~alITGaag~~GIG~AiA~~la~-~Ga~V~i~~r~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   81 (274)
T d2pd4a1           3 LKGKKGLIVGVANNKSIAYGIAQSCFN-QGATLAFTYLNESLEKRVRPIAQELNSPYVYELDVSKEEHFKSLYNSVKKDL   81 (274)
T ss_dssp             TTTCEEEEECCCSTTSHHHHHHHHHHT-TTCEEEEEESSTTTHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHHHhhCCceeEeeecccchhhHHHHHHHHHHHc
Confidence            3589999999877  799997777666 599999999876533333   3333 22222  222211 1       1113


Q ss_pred             CCccEEEecCc
Q 016265          295 EKFDVVYDAIG  305 (392)
Q Consensus       295 ~~~D~vid~~G  305 (392)
                      .++|+++.+.|
T Consensus        82 g~id~lV~nag   92 (274)
T d2pd4a1          82 GSLDFIVHSVA   92 (274)
T ss_dssp             SCEEEEEECCC
T ss_pred             CCCCeEEeecc
Confidence            57899998876

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=95.47  E-value=0.033  Score=47.32  Aligned_cols=97  Identities=21%  Similarity=0.192  Sum_probs=64.3

Q ss_pred             HHhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhc----CCcEEEeCCCCcc---ccCCCCc
Q 016265          225 LERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSL----GADLAIDYTKDNF---EDLPEKF  297 (392)
Q Consensus       225 l~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~----G~~~vi~~~~~~~---~~~~~~~  297 (392)
                      ++...+++|++||=+| + +.|..+..+|+..-+..|++++.++.-++.+++.    +....+..+....   ......+
T Consensus        67 l~~l~ikpG~~VLDlG-c-GsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~v  144 (230)
T d1g8sa_          67 LKVMPIKRDSKILYLG-A-SAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIVEKV  144 (230)
T ss_dssp             CCCCCCCTTCEEEEES-C-CSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTCCCE
T ss_pred             HHhCCCCCCCEEEEeC-E-EcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhhhcccceEEEeeccCccccccccee
Confidence            4667899999999998 3 3478888888863345889999999877777543    2222333222222   2223356


Q ss_pred             cEEEecCcc-------HHHHHHhcccCCeEEEE
Q 016265          298 DVVYDAIGQ-------CDRAVKAIKEGGTVVAL  323 (392)
Q Consensus       298 D~vid~~G~-------~~~~~~~l~~~G~iv~~  323 (392)
                      |+++.....       +..+.+.|+|||+++..
T Consensus       145 ~~i~~~~~~~~~~~~~l~~~~r~LKpgG~~~i~  177 (230)
T d1g8sa_         145 DVIYEDVAQPNQAEILIKNAKWFLKKGGYGMIA  177 (230)
T ss_dssp             EEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             EEeeccccchHHHHHHHHHHHHhcccCceEEEE
Confidence            666665431       46778899999998765

>d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Erythromycin synthase, eryAI, 1st ketoreductase module
species: Saccharopolyspora erythraea [TaxId: 1836]

Probab=95.46  E-value=0.032  Score=48.02  Aligned_cols=76  Identities=24%  Similarity=0.400  Sum_probs=46.6

Q ss_pred             CCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCe-EEEEeCCcc---c----HHHHHhcCCcEEE---eCCCCc-c----cc
Q 016265          229 GFSAGKSILVLNGSGGVGSLVIQLAKQVFGAS-RVAATSSTR---N----LEFLKSLGADLAI---DYTKDN-F----ED  292 (392)
Q Consensus       229 ~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~-vv~~~~~~~---~----~~~~~~~G~~~vi---~~~~~~-~----~~  292 (392)
                      .++|+.++||+||+|++|++.+..+-. .|++ ++++.+++.   +    .+.+++.|....+   |..+.+ .    ..
T Consensus         5 ~~~p~gt~lVTGgs~GIG~a~a~~la~-~Ga~~vvl~~R~~~~~~~~~~~~~~l~~~g~~v~~~~~Dv~d~~~~~~~~~~   83 (259)
T d2fr1a1           5 EWKPTGTVLVTGGTGGVGGQIARWLAR-RGAPHLLLVSRSGPDADGAGELVAELEALGARTTVAACDVTDRESVRELLGG   83 (259)
T ss_dssp             CCCCCSEEEEETTTSHHHHHHHHHHHH-HTCSEEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHT
T ss_pred             ccCCcCEEEEECCCcHHHHHHHHHHHH-CCCCEEEEEeCCccCHHHHHHHHHHHHhccccccccccccchHHHHHHhhcc
Confidence            478999999999999999997765545 3885 555555432   1    2233456654322   322211 1    11


Q ss_pred             C--CCCccEEEecCc
Q 016265          293 L--PEKFDVVYDAIG  305 (392)
Q Consensus       293 ~--~~~~D~vid~~G  305 (392)
                      +  ..++|.++.+.|
T Consensus        84 i~~~~~i~~vv~~ag   98 (259)
T d2fr1a1          84 IGDDVPLSAVFHAAA   98 (259)
T ss_dssp             SCTTSCEEEEEECCC
T ss_pred             ccccccccccccccc
Confidence            1  236899998877

>d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=95.45  E-value=0.019  Score=46.53  Aligned_cols=92  Identities=21%  Similarity=0.157  Sum_probs=60.2

Q ss_pred             eEEEEcCCCcHHHHHHHHHHHhcCCeEEEEe-C-CcccHHHHHhcCCcEEEeCCCC--cc-----------ccCCCCccE
Q 016265          235 SILVLNGSGGVGSLVIQLAKQVFGASRVAAT-S-STRNLEFLKSLGADLAIDYTKD--NF-----------EDLPEKFDV  299 (392)
Q Consensus       235 ~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~-~-~~~~~~~~~~~G~~~vi~~~~~--~~-----------~~~~~~~D~  299 (392)
                      +|.|.| .|-+|...+..+......+++.+- . .......+.+++.+......+.  .+           .+..+++|+
T Consensus         4 rIaING-fGRIGR~v~Ral~~~~dieiVaINd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vDv   82 (172)
T d2czca2           4 KVGVNG-YGTIGKRVAYAVTKQDDMELIGITKTKPDFEAYRAKELGIPVYAASEEFIPRFEKEGFEVAGTLNDLLEKVDI   82 (172)
T ss_dssp             EEEEEC-CSHHHHHHHHHHHTCTTEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHHTCCCSCBHHHHHTTCSE
T ss_pred             EEEEEC-CCHHHHHHHHHHHhCCCceEEEEecCCChHHHHHhhhcCceeecccccceeeecccCccccchhhhhhccCCE
Confidence            689998 999999888877543234666553 3 3344556677775543321111  11           111247999


Q ss_pred             EEecCcc---HHHHHHhcccCCeEEEEcCCC
Q 016265          300 VYDAIGQ---CDRAVKAIKEGGTVVALTGAV  327 (392)
Q Consensus       300 vid~~G~---~~~~~~~l~~~G~iv~~g~~~  327 (392)
                      |+||+|.   .+.+-.++..|-+.|..+.+.
T Consensus        83 ViEcTG~f~~~~~~~~hl~~G~k~Vi~s~~~  113 (172)
T d2czca2          83 IVDATPGGIGAKNKPLYEKAGVKAIFQGGEK  113 (172)
T ss_dssp             EEECCSTTHHHHHHHHHHHHTCEEEECTTSC
T ss_pred             EEECCCCCCCHHHHHHHHHcCCCEEEECCCC
Confidence            9999994   467778889999988887765

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.41  E-value=0.0044  Score=52.85  Aligned_cols=91  Identities=14%  Similarity=0.180  Sum_probs=59.6

Q ss_pred             CCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCc----E-EEeCCCCcc-ccC-CCCccEEE-
Q 016265          230 FSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGAD----L-AIDYTKDNF-EDL-PEKFDVVY-  301 (392)
Q Consensus       230 ~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~----~-vi~~~~~~~-~~~-~~~~D~vi-  301 (392)
                      ..+|++||-+|  .|.|..+..+++. .+.++++++.++.-++.+++....    . .+....... ... .+.||.++ 
T Consensus        51 ~~~g~~VLdIG--cG~G~~a~~~a~~-~~~~v~~id~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~f  127 (229)
T d1zx0a1          51 SSKGGRVLEVG--FGMAIAASKVQEA-PIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILY  127 (229)
T ss_dssp             TTTCEEEEEEC--CTTSHHHHHHHTS-CEEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEE
T ss_pred             ccCCCeEEEee--ccchHHHHHHHHc-CCCeEEEeCCCHHHHHHHHHHhhhcccccccccccccccccccccccccceee
Confidence            46899999997  4568888899986 467888999999888888764321    1 111111111 112 34688874 


Q ss_pred             ecCc------c-------HHHHHHhcccCCeEEEE
Q 016265          302 DAIG------Q-------CDRAVKAIKEGGTVVAL  323 (392)
Q Consensus       302 d~~G------~-------~~~~~~~l~~~G~iv~~  323 (392)
                      |...      .       +..+.++|+|||+++.+
T Consensus       128 D~~~~~~~~~~~~~~~~~~~~~~r~LkpGG~~~~~  162 (229)
T d1zx0a1         128 DTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYC  162 (229)
T ss_dssp             CCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEEC
T ss_pred             cccccccccccccCHHHHHHHHHHHcCCCcEEEEE
Confidence            6542      1       24577899999998754

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=95.34  E-value=0.027  Score=45.08  Aligned_cols=90  Identities=20%  Similarity=0.142  Sum_probs=58.0

Q ss_pred             CCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCC-c---cccCCCCccEEEecCcc--
Q 016265          233 GKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKD-N---FEDLPEKFDVVYDAIGQ--  306 (392)
Q Consensus       233 g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~-~---~~~~~~~~D~vid~~G~--  306 (392)
                      +++|+|+| +|.+|...++.+.. .|.+|++++++.++.+.+.+......+..... .   ........|.++.++..  
T Consensus         2 ~K~IliiG-aG~~G~~~a~~L~~-~g~~V~v~dr~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~   79 (182)
T d1e5qa1           2 TKSVLMLG-SGFVTRPTLDVLTD-SGIKVTVACRTLESAKKLSAGVQHSTPISLDVNDDAALDAEVAKHDLVISLIPYTF   79 (182)
T ss_dssp             CCEEEEEC-CSTTHHHHHHHHHT-TTCEEEEEESCHHHHHHHHTTCTTEEEEECCTTCHHHHHHHHTTSSEEEECSCGGG
T ss_pred             CCEEEEEC-CCHHHHHHHHHHHh-CCCEEEEEECChHHHHHHHhcccccccccccccchhhhHhhhhccceeEeeccchh
Confidence            67899998 79999998887776 49999999999999887765333333222211 1   11223467888887662  


Q ss_pred             -HHHHHHhcccCCeEEEEc
Q 016265          307 -CDRAVKAIKEGGTVVALT  324 (392)
Q Consensus       307 -~~~~~~~l~~~G~iv~~g  324 (392)
                       ......+++.+-.++...
T Consensus        80 ~~~~~~~~~~~~~~~~~~~   98 (182)
T d1e5qa1          80 HATVIKSAIRQKKHVVTTS   98 (182)
T ss_dssp             HHHHHHHHHHHTCEEECSS
T ss_pred             hhHHHHHHHhhccceeecc
Confidence             233444555555655543

>d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase sniffer
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=95.27  E-value=0.016  Score=49.85  Aligned_cols=72  Identities=13%  Similarity=0.223  Sum_probs=45.9

Q ss_pred             CeEEEEcCCCcHHHHHHHHH-HH-hcCCeEEEEeCCcccHHHHHh---cCCc-EEE--eCCCCc-ccc---------CCC
Q 016265          234 KSILVLNGSGGVGSLVIQLA-KQ-VFGASRVAATSSTRNLEFLKS---LGAD-LAI--DYTKDN-FED---------LPE  295 (392)
Q Consensus       234 ~~VlI~Ga~G~vG~~aiqla-k~-~~G~~vv~~~~~~~~~~~~~~---~G~~-~vi--~~~~~~-~~~---------~~~  295 (392)
                      ++|||+||++|+|++.++.+ +. ..|++|+++.+++++++.+++   .+.. .++  |..+.+ ..+         ...
T Consensus         3 KtilITGas~GIG~a~a~~l~~~a~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~i~~~~~~~   82 (248)
T d1snya_           3 NSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKELEDLAKNHSNIHILEIDLRNFDAYDKLVADIEGVTKDQ   82 (248)
T ss_dssp             SEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCTTSCHHHHHHHHHCTTEEEEECCTTCGGGHHHHHHHHHHHHGGG
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHhcCCcEEEEEEEeccHHHHHHHHhhhHHHhhcC
Confidence            58999999999999877543 21 148899999998887665543   2222 223  333321 111         124


Q ss_pred             CccEEEecCc
Q 016265          296 KFDVVYDAIG  305 (392)
Q Consensus       296 ~~D~vid~~G  305 (392)
                      ++|+++++.|
T Consensus        83 ~iDiLvnNAg   92 (248)
T d1snya_          83 GLNVLFNNAG   92 (248)
T ss_dssp             CCSEEEECCC
T ss_pred             CcceEEeecc
Confidence            6899999876

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

Probab=95.21  E-value=0.011  Score=53.39  Aligned_cols=77  Identities=18%  Similarity=0.201  Sum_probs=52.2

Q ss_pred             cCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcC-----Cc--EEE--eC-CCCccccCCCCc
Q 016265          228 TGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLG-----AD--LAI--DY-TKDNFEDLPEKF  297 (392)
Q Consensus       228 ~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G-----~~--~vi--~~-~~~~~~~~~~~~  297 (392)
                      .-+.+|++|||+||+|-+|...+..+.. .|.+|++++++..+.+.++...     ..  ..+  |. +...+.+...++
T Consensus         6 ~~~~~gk~VlVTG~sGfIGs~l~~~Ll~-~G~~V~~~vR~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~   84 (342)
T d1y1pa1           6 AVLPEGSLVLVTGANGFVASHVVEQLLE-HGYKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIKGA   84 (342)
T ss_dssp             CSSCTTCEEEEETTTSHHHHHHHHHHHH-TTCEEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTTTTTC
T ss_pred             CCCCCcCEEEEECCCCHHHHHHHHHHHH-CcCEEEEEeCCchhHHHHHHhhhccccccccEEEeccccchhhhhhhcccc
Confidence            3467899999999999999988876656 4999999998877666553321     11  122  21 222344455688


Q ss_pred             cEEEecCc
Q 016265          298 DVVYDAIG  305 (392)
Q Consensus       298 D~vid~~G  305 (392)
                      |.++.+.+
T Consensus        85 ~~v~~~a~   92 (342)
T d1y1pa1          85 AGVAHIAS   92 (342)
T ss_dssp             SEEEECCC
T ss_pred             hhhhhhcc
Confidence            99997754

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.13  E-value=0.053  Score=44.44  Aligned_cols=91  Identities=20%  Similarity=0.250  Sum_probs=59.4

Q ss_pred             CCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHH----hcCCcEE-EeCCCCccccCCCCccEEEecC
Q 016265          230 FSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLK----SLGADLA-IDYTKDNFEDLPEKFDVVYDAI  304 (392)
Q Consensus       230 ~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~----~~G~~~v-i~~~~~~~~~~~~~~D~vid~~  304 (392)
                      +++| +||=+| +| .|..+..+++.  |.+++.++.++.-++.++    +.|.+.+ +...+..-....+.||+|+...
T Consensus        29 ~~~g-rvLDiG-cG-~G~~~~~la~~--g~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~I~~~~  103 (198)
T d2i6ga1          29 VAPG-RTLDLG-CG-NGRNSLYLAAN--GYDVTAWDKNPASMANLERIKAAEGLDNLQTDLVDLNTLTFDGEYDFILSTV  103 (198)
T ss_dssp             SCSC-EEEEET-CT-TSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCTTEEEEECCTTTCCCCCCEEEEEEES
T ss_pred             CCCC-cEEEEC-CC-CCHHHHHHHHH--hhhhccccCcHHHHHHHHHHhhhccccchhhhheecccccccccccEEEEee
Confidence            3444 899997 54 89999999973  899999999988777654    3454421 1111111111245799998632


Q ss_pred             --c---------cHHHHHHhcccCCeEEEEcC
Q 016265          305 --G---------QCDRAVKAIKEGGTVVALTG  325 (392)
Q Consensus       305 --G---------~~~~~~~~l~~~G~iv~~g~  325 (392)
                        .         .++.+.++|+++|.++....
T Consensus       104 ~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~  135 (198)
T d2i6ga1         104 VMMFLEAQTIPGLIANMQRCTKPGGYNLIVAA  135 (198)
T ss_dssp             CGGGSCTTHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             eeecCCHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence              1         13667778999999887643

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=95.07  E-value=0.013  Score=42.25  Aligned_cols=68  Identities=15%  Similarity=0.224  Sum_probs=45.2

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcc--cHHHHHhcCCcEEEeCCCCccccCCCCccEEEecCc
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTR--NLEFLKSLGADLAIDYTKDNFEDLPEKFDVVYDAIG  305 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~--~~~~~~~~G~~~vi~~~~~~~~~~~~~~D~vid~~G  305 (392)
                      .|++|+|+| .|..|+++++++.. .|++|++.+.+..  ..+.+++ +....+.....   ....++|.++-+.|
T Consensus         4 ~~K~v~ViG-lG~sG~s~a~~L~~-~g~~v~~~D~~~~~~~~~~~~~-~~~~~~~~~~~---~~~~~~d~vi~SPG   73 (93)
T d2jfga1           4 QGKNVVIIG-LGLTGLSCVDFFLA-RGVTPRVMDTRMTPPGLDKLPE-AVERHTGSLND---EWLMAADLIVASPG   73 (93)
T ss_dssp             TTCCEEEEC-CSHHHHHHHHHHHH-TTCCCEEEESSSSCTTGGGSCT-TSCEEESBCCH---HHHHHCSEEEECTT
T ss_pred             CCCEEEEEe-ECHHHHHHHHHHHH-CCCEEEEeeCCcCchhHHHHhh-ccceeecccch---hhhccCCEEEECCC
Confidence            478899998 89999999999998 5999999987443  2333222 22222222111   11236799998887

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=95.05  E-value=0.019  Score=48.96  Aligned_cols=87  Identities=21%  Similarity=0.217  Sum_probs=58.1

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHh----cCCcE-EEeCCCCccccCCCCccEEEecCc
Q 016265          231 SAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKS----LGADL-AIDYTKDNFEDLPEKFDVVYDAIG  305 (392)
Q Consensus       231 ~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~----~G~~~-vi~~~~~~~~~~~~~~D~vid~~G  305 (392)
                      .++++||=+| +| .|..+..+++.  |.+++.++.|++-++.+++    .|... ++..+-.++ ...+.||+|+...+
T Consensus        36 ~~~~~vLDiG-CG-~G~~~~~l~~~--g~~v~GvD~S~~ml~~A~~~~~~~~~~v~~~~~d~~~~-~~~~~fD~i~~~~~  110 (246)
T d1y8ca_          36 LVFDDYLDLA-CG-TGNLTENLCPK--FKNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNL-NINRKFDLITCCLD  110 (246)
T ss_dssp             CCTTEEEEET-CT-TSTTHHHHGGG--SSEEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGC-CCSCCEEEEEECTT
T ss_pred             CCCCeEEEEe-Cc-CCHHHHHHHHh--CCccEeeccchhhhhhccccccccCccceeeccchhhh-cccccccccceeee
Confidence            4457899987 55 58888889874  8899999999987777653    34332 222111112 23457999985422


Q ss_pred             ---c----------HHHHHHhcccCCeEEE
Q 016265          306 ---Q----------CDRAVKAIKEGGTVVA  322 (392)
Q Consensus       306 ---~----------~~~~~~~l~~~G~iv~  322 (392)
                         .          ++.+.++|+|||.++.
T Consensus       111 ~~~~~~~~~~~~~~l~~~~~~LkpgG~~i~  140 (246)
T d1y8ca_         111 STNYIIDSDDLKKYFKAVSNHLKEGGVFIF  140 (246)
T ss_dssp             GGGGCCSHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred             eeeccCCHHHHHHHHHHHHHhCCCCeEEEE
Confidence               1          3567788999999874

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=94.91  E-value=0.042  Score=42.01  Aligned_cols=69  Identities=22%  Similarity=0.347  Sum_probs=51.9

Q ss_pred             eEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEE-eCCCCc-cccC-CCCccEEEecCc
Q 016265          235 SILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAI-DYTKDN-FEDL-PEKFDVVYDAIG  305 (392)
Q Consensus       235 ~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi-~~~~~~-~~~~-~~~~D~vid~~G  305 (392)
                      +++|+| .|-+|...++.+.. .|.++++++.++++.+.+++.|...++ |..+.+ +.+. .+.+|.+|-+++
T Consensus         2 ~~iIiG-~G~~G~~la~~L~~-~g~~vvvid~d~~~~~~~~~~~~~~~~gd~~~~~~l~~a~i~~a~~vi~~~~   73 (134)
T d2hmva1           2 QFAVIG-LGRFGGSIVKELHR-MGHEVLAVDINEEKVNAYASYATHAVIANATEENELLSLGIRNFEYVIVAIG   73 (134)
T ss_dssp             CEEEEC-CSHHHHHHHHHHHH-TTCCCEEEESCHHHHHHTTTTCSEEEECCTTCTTHHHHHTGGGCSEEEECCC
T ss_pred             EEEEEC-CCHHHHHHHHHHHH-CCCeEEEecCcHHHHHHHHHhCCcceeeecccchhhhccCCccccEEEEEcC
Confidence            578887 89999999999988 599999999999999999888865544 222222 2222 346898888876

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=94.87  E-value=0.022  Score=46.43  Aligned_cols=101  Identities=13%  Similarity=0.215  Sum_probs=59.5

Q ss_pred             HHHHhcCC-CCCCeEEEEcCCCcHHHHHHHHHHHhcCCe-EEEEeCCcccHHHH----HhcC----C-cEEEeCCC-Ccc
Q 016265          223 EGLERTGF-SAGKSILVLNGSGGVGSLVIQLAKQVFGAS-RVAATSSTRNLEFL----KSLG----A-DLAIDYTK-DNF  290 (392)
Q Consensus       223 ~al~~~~~-~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~-vv~~~~~~~~~~~~----~~~G----~-~~vi~~~~-~~~  290 (392)
                      ++++..+. -.+.+|+|+| +|+.|.+++..+.. .|++ ++++.++.++.+.+    ++++    . ..+.+..+ ..+
T Consensus         7 ~~l~~~~~~l~~k~vlIlG-aGGaarai~~al~~-~g~~~i~i~nR~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~   84 (182)
T d1vi2a1           7 RAIKESGFDIKGKTMVLLG-AGGASTAIGAQGAI-EGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLADQQAF   84 (182)
T ss_dssp             HHHHHTTCCCTTCEEEEEC-CSHHHHHHHHHHHH-TTCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCHHHH
T ss_pred             HHHHHcCCCcCCCEEEEEC-CcHHHHHHHHHHhh-cCCceEeeeccchHHHHHHHHHHHHHHhhcCcceEeeecccccch
Confidence            45554443 3678999998 89999998877777 4775 55666776655433    3332    1 11223322 122


Q ss_pred             ccCCCCccEEEecCc-cH-----H---HHHHhcccCCeEEEEcC
Q 016265          291 EDLPEKFDVVYDAIG-QC-----D---RAVKAIKEGGTVVALTG  325 (392)
Q Consensus       291 ~~~~~~~D~vid~~G-~~-----~---~~~~~l~~~G~iv~~g~  325 (392)
                      .+....+|++|+|+. .+     +   .-+..++++..++.+.-
T Consensus        85 ~~~~~~~diiIN~Tp~G~~~~~~~~~~~~~~~~~~~~~v~Di~Y  128 (182)
T d1vi2a1          85 AEALASADILTNGTKVGMKPLENESLVNDISLLHPGLLVTECVY  128 (182)
T ss_dssp             HHHHHTCSEEEECSSTTSTTSCSCCSCCCGGGSCTTCEEEECCC
T ss_pred             hhhhcccceeccccCCccccccchhhhhHHHhhhcchhhHHhhc
Confidence            222347899999975 11     1   11345677777777643

>d1r0ka2 c.2.1.3 (A:3-126,A:265-290) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase
species: Zymomonas mobilis [TaxId: 542]

Probab=94.80  E-value=0.082  Score=41.51  Aligned_cols=88  Identities=24%  Similarity=0.336  Sum_probs=60.3

Q ss_pred             CeEEEEcCCCcHHHHHHHHHHHhc-CCeEEEEeCC--ccc-HHHHHhcCCcEEEeCCCCccccC----------------
Q 016265          234 KSILVLNGSGGVGSLVIQLAKQVF-GASRVAATSS--TRN-LEFLKSLGADLAIDYTKDNFEDL----------------  293 (392)
Q Consensus       234 ~~VlI~Ga~G~vG~~aiqlak~~~-G~~vv~~~~~--~~~-~~~~~~~G~~~vi~~~~~~~~~~----------------  293 (392)
                      .+|.|+|++|.+|.-+.++.+... ..+++.....  -++ .+.+++|....++-.++....++                
T Consensus         3 K~I~IlGsTGSIG~~tL~Vi~~~~d~f~v~~lsa~~N~~~L~~q~~ef~Pk~v~i~d~~~~~~l~~~~~~~~~~v~~g~~   82 (150)
T d1r0ka2           3 RTVTVLGATGSIGHSTLDLIERNLDRYQVIALTANRNVKDLADAAKRTNAKRAVIADPSLYNDLKEALAGSSVEAAAGAD   82 (150)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTGGGEEEEEEEESSCHHHHHHHHHHTTCSEEEESCGGGHHHHHHHTTTCSSEEEESHH
T ss_pred             cEEEEECCCcHHHHHHHHHHHcCCCCcEEEEEEeCCCHHHHHHHHHhhccccceeccHHHHHHHHHHhhhcccccccCcc
Confidence            689999999999999999998731 3567766543  223 34557888877765544322110                


Q ss_pred             ------CCCccEEEec-Cc--cHHHHHHhcccCCeEE
Q 016265          294 ------PEKFDVVYDA-IG--QCDRAVKAIKEGGTVV  321 (392)
Q Consensus       294 ------~~~~D~vid~-~G--~~~~~~~~l~~~G~iv  321 (392)
                            ...+|+++.+ +|  ++.-.+.+++.|-++.
T Consensus        83 ~l~~~~~~~~D~vv~Ai~G~~GL~~tl~ai~~gk~ia  119 (150)
T d1r0ka2          83 ALVEAAMMGADWTMAAIIGCAGLKATLAAIRKGKTVA  119 (150)
T ss_dssp             HHHHHHTSCCSEEEECCCSGGGHHHHHHHHHTTSEEE
T ss_pred             chheecccccceeeeecCchhHHHHHHHHHhcCCEEE
Confidence                  2258999999 56  5788888888876653

>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein At5g02240 (T7H20 290)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=94.73  E-value=0.014  Score=48.74  Aligned_cols=70  Identities=23%  Similarity=0.247  Sum_probs=42.5

Q ss_pred             CeEEEEcCCCcHHHHHHHHHHHhcCCe--EEEEeCCcccHHHHHhcCCcEEE-eCCC-CccccCCCCccEEEecCc
Q 016265          234 KSILVLNGSGGVGSLVIQLAKQVFGAS--RVAATSSTRNLEFLKSLGADLAI-DYTK-DNFEDLPEKFDVVYDAIG  305 (392)
Q Consensus       234 ~~VlI~Ga~G~vG~~aiqlak~~~G~~--vv~~~~~~~~~~~~~~~G~~~vi-~~~~-~~~~~~~~~~D~vid~~G  305 (392)
                      .+|||+||+|.+|...+..+.. .|.+  ++...+++++.+.+.. +...+. |..+ +.+.+..+++|.|+.+.+
T Consensus         4 ~tVlVtGatG~iG~~l~~~Ll~-~g~~v~v~~~~R~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~d~vi~~a~   77 (252)
T d2q46a1           4 PTVLVTGASGRTGQIVYKKLKE-GSDKFVAKGLVRSAQGKEKIGG-EADVFIGDITDADSINPAFQGIDALVILTS   77 (252)
T ss_dssp             CEEEEESTTSTTHHHHHHHHHH-TTTTCEEEEEESCHHHHHHTTC-CTTEEECCTTSHHHHHHHHTTCSEEEECCC
T ss_pred             CEEEEECCccHHHHHHHHHHHH-CCCcEEEEEEcCCHHHHHhccC-CcEEEEeeeccccccccccccceeeEEEEe
Confidence            4899999999999999888776 4754  4445666665544321 222221 2222 122233457888887754

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=94.71  E-value=0.021  Score=47.29  Aligned_cols=103  Identities=19%  Similarity=0.255  Sum_probs=69.9

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCCccccCCCCccEEEecCc------
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFEDLPEKFDVVYDAIG------  305 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~~~~~~~D~vid~~G------  305 (392)
                      .|.+|.|+| .|.+|...+++++. +|++|++.+........  ..+.      ...++.+.-...|+++-++.      
T Consensus        42 ~gk~vgIiG-~G~IG~~va~~l~~-fg~~V~~~d~~~~~~~~--~~~~------~~~~l~~~l~~sDii~~~~plt~~T~  111 (197)
T d1j4aa1          42 RDQVVGVVG-TGHIGQVFMQIMEG-FGAKVITYDIFRNPELE--KKGY------YVDSLDDLYKQADVISLHVPDVPANV  111 (197)
T ss_dssp             GGSEEEEEC-CSHHHHHHHHHHHH-TTCEEEEECSSCCHHHH--HTTC------BCSCHHHHHHHCSEEEECSCCCGGGT
T ss_pred             cCCeEEEec-ccccchhHHHhHhh-hcccccccCcccccccc--ccee------eeccccccccccccccccCCcccccc
Confidence            478999998 99999999999998 69999988765433221  2221      11223333445798888764      


Q ss_pred             c-H-HHHHHhcccCCeEEEEcCCCCCCceEEEEeecHHHHHHHHHHHHCCCcc
Q 016265          306 Q-C-DRAVKAIKEGGTVVALTGAVTPPGFRFVVTSNGEVLKKLNPYLESGKVK  356 (392)
Q Consensus       306 ~-~-~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~l~  356 (392)
                      . + ...++.|+++..+|.++....         .   +.+.+.+.+++|++.
T Consensus       112 ~li~~~~l~~mk~~a~lIN~sRG~i---------v---de~aL~~aL~~~~i~  152 (197)
T d1j4aa1         112 HMINDESIAKMKQDVVIVNVSRGPL---------V---DTDAVIRGLDSGKIF  152 (197)
T ss_dssp             TCBSHHHHHHSCTTEEEEECSCGGG---------B---CHHHHHHHHHHTSEE
T ss_pred             ccccHHHHhhhCCccEEEecCchhh---------h---hhHHHHHHHhcccch
Confidence            1 2 688999999988886643210         0   135567888888875

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=94.70  E-value=0.083  Score=42.83  Aligned_cols=93  Identities=22%  Similarity=0.204  Sum_probs=60.4

Q ss_pred             CCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcc---c--------------------HHHHHhcCCcEEEeCC
Q 016265          230 FSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTR---N--------------------LEFLKSLGADLAIDYT  286 (392)
Q Consensus       230 ~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~---~--------------------~~~~~~~G~~~vi~~~  286 (392)
                      ...+++|+|+| +|+.|+.|+..+.. .|.+|++....+.   +                    .+.++++|.+..++..
T Consensus        40 ~~~~k~V~IIG-aGPAGL~AA~~la~-~G~~Vtl~E~~~~~GG~l~~~~~~p~~~~~~~~~~~~~~~~~~~gV~i~l~~~  117 (179)
T d1ps9a3          40 AVQKKNLAVVG-AGPAGLAFAINAAA-RGHQVTLFDAHSEIGGQFNIAKQIPGKEEFYETLRYYRRMIEVTGVTLKLNHT  117 (179)
T ss_dssp             CSSCCEEEEEC-CSHHHHHHHHHHHT-TTCEEEEEESSSSSCTTHHHHTTSTTCTTHHHHHHHHHHHHHHHTCEEEESCC
T ss_pred             CCCCcEEEEEC-ccHHHHHHHHHHHh-hccceEEEeccCccCceEEEEEeCcccchHHHHHHHHHHhhhcCCeEEEeCCE
Confidence            45578999998 99999999999987 5999999986431   0                    1223556776555432


Q ss_pred             CCccccCCCCccEEEecCccH--HHHHHhcccCCeEEEEcCC
Q 016265          287 KDNFEDLPEKFDVVYDAIGQC--DRAVKAIKEGGTVVALTGA  326 (392)
Q Consensus       287 ~~~~~~~~~~~D~vid~~G~~--~~~~~~l~~~G~iv~~g~~  326 (392)
                      -.  .+...++|.||-++|..  ...+.-+..+.+++.+|+.
T Consensus       118 Vt--~~~~~~~d~vilAtG~~~~~~~~pg~~~g~~v~viggg  157 (179)
T d1ps9a3         118 VT--ADQLQAFDETILASGIPNRALAQPLIDSGKTVHLIGGC  157 (179)
T ss_dssp             CC--SSSSCCSSEEEECCCEECCTTHHHHHTTTCCEEECGGG
T ss_pred             Ec--ccccccceeEEEeecCCCcccccchhccCCEEEEECCc
Confidence            21  22345799999999942  2222333445566666543

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=94.70  E-value=0.033  Score=45.44  Aligned_cols=100  Identities=15%  Similarity=0.141  Sum_probs=70.7

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCCccccCCCCccEEEecCcc-----
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFEDLPEKFDVVYDAIGQ-----  306 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~~~~~~~D~vid~~G~-----  306 (392)
                      .|.+|.|+| .|.+|...+++++. +|++|++.++....       +....    ..++.+.-...|+|+-++..     
T Consensus        41 ~gk~vgIiG-~G~IG~~va~~l~~-~g~~v~~~d~~~~~-------~~~~~----~~~l~ell~~sDiv~~~~pl~~~t~  107 (181)
T d1qp8a1          41 QGEKVAVLG-LGEIGTRVGKILAA-LGAQVRGFSRTPKE-------GPWRF----TNSLEEALREARAAVCALPLNKHTR  107 (181)
T ss_dssp             TTCEEEEES-CSTHHHHHHHHHHH-TTCEEEEECSSCCC-------SSSCC----BSCSHHHHTTCSEEEECCCCSTTTT
T ss_pred             cCceEEEec-cccccccceeeeec-cccccccccccccc-------cceee----eechhhhhhccchhhcccccccccc
Confidence            578999998 99999999999998 69999999875432       11111    12344455678999987641     


Q ss_pred             --H-HHHHHhcccCCeEEEEcCCCCCCceEEEEeecHHHHHHHHHHHHCCCcc
Q 016265          307 --C-DRAVKAIKEGGTVVALTGAVTPPGFRFVVTSNGEVLKKLNPYLESGKVK  356 (392)
Q Consensus       307 --~-~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~l~  356 (392)
                        + ...++.|+++..+|.++....         .   +-+.+.+.++++++.
T Consensus       108 ~li~~~~l~~mk~~ailIN~~RG~i---------v---d~~aL~~aL~~~~i~  148 (181)
T d1qp8a1         108 GLVKYQHLALMAEDAVFVNVGRAEV---------L---DRDGVLRILKERPQF  148 (181)
T ss_dssp             TCBCHHHHTTSCTTCEEEECSCGGG---------B---CHHHHHHHHHHCTTC
T ss_pred             cccccceeeeccccceEEecccccc---------c---cchhhhhhcccCcEE
Confidence              1 789999999999987753220         1   135566778888875

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.69  E-value=0.068  Score=47.30  Aligned_cols=90  Identities=22%  Similarity=0.243  Sum_probs=55.1

Q ss_pred             cCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCC-eEEEEeCCcccHH---HHHhcCCc---EEEeCCCCccccCCCCccEE
Q 016265          228 TGFSAGKSILVLNGSGGVGSLVIQLAKQVFGA-SRVAATSSTRNLE---FLKSLGAD---LAIDYTKDNFEDLPEKFDVV  300 (392)
Q Consensus       228 ~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~-~vv~~~~~~~~~~---~~~~~G~~---~vi~~~~~~~~~~~~~~D~v  300 (392)
                      ....+|++||-+| +| .|.+++.+|++  |+ +|++++.++.-..   ..++.|..   .++..+..++....+.+|+|
T Consensus        31 ~~~~~~~~VLDiG-cG-~G~lsl~aa~~--Ga~~V~aid~s~~~~~a~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~D~I  106 (311)
T d2fyta1          31 PHIFKDKVVLDVG-CG-TGILSMFAAKA--GAKKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVI  106 (311)
T ss_dssp             GGGTTTCEEEEET-CT-TSHHHHHHHHT--TCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSCEEEE
T ss_pred             cccCCcCEEEEEC-CC-CCHHHHHHHHc--CCCEEEEEeCHHHHHHHHHHHHHhCCCccceEEEeeHHHhcCccccceEE
Confidence            4567899999998 55 67888888874  66 6777777764322   22344432   23333333333334689999


Q ss_pred             Eec-Ccc-------H----HHHHHhcccCCeEE
Q 016265          301 YDA-IGQ-------C----DRAVKAIKEGGTVV  321 (392)
Q Consensus       301 id~-~G~-------~----~~~~~~l~~~G~iv  321 (392)
                      +.- .+.       +    ...-+.|+|||+++
T Consensus       107 vse~~~~~~~~e~~~~~~~~a~~~~Lkp~G~ii  139 (311)
T d2fyta1         107 ISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVY  139 (311)
T ss_dssp             EECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred             EEeeeeeecccccccHHHHHHHHhcCCCCcEEe
Confidence            852 331       2    23345799999986

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=94.63  E-value=0.05  Score=45.11  Aligned_cols=67  Identities=25%  Similarity=0.352  Sum_probs=51.7

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCCccccCCCCccEEEecC
Q 016265          231 SAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFEDLPEKFDVVYDAI  304 (392)
Q Consensus       231 ~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~~~~~~~D~vid~~  304 (392)
                      -.|.+|+|.| .|.+|..+++++.. .|+++++.+.+.++.+....+|.+.+ ..  +++  +...+|+++=|.
T Consensus        25 L~gk~v~IqG-~G~VG~~~A~~L~~-~Gakvvv~d~d~~~~~~~~~~g~~~~-~~--~~~--~~~~~DI~iPcA   91 (201)
T d1c1da1          25 LDGLTVLVQG-LGAVGGSLASLAAE-AGAQLLVADTDTERVAHAVALGHTAV-AL--EDV--LSTPCDVFAPCA   91 (201)
T ss_dssp             STTCEEEEEC-CSHHHHHHHHHHHH-TTCEEEEECSCHHHHHHHHHTTCEEC-CG--GGG--GGCCCSEEEECS
T ss_pred             CCCCEEEEEC-CCHHHHHHHHHHHH-CCCEEEEecchHHHHHHHHhhccccc-Cc--ccc--ccccceeeeccc
Confidence            4789999998 99999999999998 59999999998888888888887543 11  111  233678887664

>d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.62  E-value=0.056  Score=41.71  Aligned_cols=52  Identities=21%  Similarity=0.310  Sum_probs=33.2

Q ss_pred             eEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCC
Q 016265          235 SILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYT  286 (392)
Q Consensus       235 ~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~  286 (392)
                      +|.|.|+.|-+|...++......+.+++......+........++|.++|+.
T Consensus         1 kI~v~Ga~GrMG~~i~~~i~~~~~~~l~~~~d~~~~~~~~~~~~~DvvIDFS   52 (135)
T d1yl7a1           1 RVGVLGAKGKVGATMVRAVAAADDLTLSAELDAGDPLSLLTDGNTEVVIDFT   52 (135)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHSTTSEEEEEECTTCCTHHHHTTTCSEEEECC
T ss_pred             CEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCchhhhccccCCEEEEcc
Confidence            5899999999999988887664566777665443333333333344444443

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=94.49  E-value=0.14  Score=39.93  Aligned_cols=79  Identities=27%  Similarity=0.339  Sum_probs=54.3

Q ss_pred             eEEEEcCCCcHHHHHHH-HHHHhcCCeEEEEeCCcccHHHHH-hcCCcEEEeCCCCccccCCCCccEEEecCc--cHHHH
Q 016265          235 SILVLNGSGGVGSLVIQ-LAKQVFGASRVAATSSTRNLEFLK-SLGADLAIDYTKDNFEDLPEKFDVVYDAIG--QCDRA  310 (392)
Q Consensus       235 ~VlI~Ga~G~vG~~aiq-lak~~~G~~vv~~~~~~~~~~~~~-~~G~~~vi~~~~~~~~~~~~~~D~vid~~G--~~~~~  310 (392)
                      +|.++| +|-+|.+.++ +.+. .+.++++.++++++++.++ ++|.. +.+..    ++. ...|+||-|+-  .+...
T Consensus         2 kI~fIG-~G~MG~ai~~~l~~~-~~~~i~v~~r~~~~~~~l~~~~~~~-~~~~~----~~v-~~~Div~lavkP~~~~~v   73 (152)
T d1yqga2           2 NVYFLG-GGNMAAAVAGGLVKQ-GGYRIYIANRGAEKRERLEKELGVE-TSATL----PEL-HSDDVLILAVKPQDMEAA   73 (152)
T ss_dssp             EEEEEC-CSHHHHHHHHHHHHH-CSCEEEEECSSHHHHHHHHHHTCCE-EESSC----CCC-CTTSEEEECSCHHHHHHH
T ss_pred             EEEEEc-CcHHHHHHHHHHHHC-CCCcEEEEeCChhHHHHhhhhcccc-ccccc----ccc-cccceEEEecCHHHHHHh
Confidence            588998 8999997766 5654 3478888899999887775 46654 22221    122 35799999986  45666


Q ss_pred             HHhcccCCeEE
Q 016265          311 VKAIKEGGTVV  321 (392)
Q Consensus       311 ~~~l~~~G~iv  321 (392)
                      ++-+++.+.++
T Consensus        74 ~~~l~~~~~~v   84 (152)
T d1yqga2          74 CKNIRTNGALV   84 (152)
T ss_dssp             HTTCCCTTCEE
T ss_pred             HHHHhhcccEE
Confidence            66677666554

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=94.28  E-value=0.034  Score=45.78  Aligned_cols=106  Identities=15%  Similarity=0.134  Sum_probs=72.0

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCCccccCCCCccEEEecCc------
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFEDLPEKFDVVYDAIG------  305 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~~~~~~~D~vid~~G------  305 (392)
                      .|.+|.|+| .|.+|...+++++. +|.++++.+............+...   .  .++.+.-...|+|+.++.      
T Consensus        46 ~g~tvgIiG-~G~IG~~va~~l~~-fg~~v~~~d~~~~~~~~~~~~~~~~---~--~~l~~ll~~sD~v~l~~plt~~T~  118 (191)
T d1gdha1          46 DNKTLGIYG-FGSIGQALAKRAQG-FDMDIDYFDTHRASSSDEASYQATF---H--DSLDSLLSVSQFFSLNAPSTPETR  118 (191)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHT-TTCEEEEECSSCCCHHHHHHHTCEE---C--SSHHHHHHHCSEEEECCCCCTTTT
T ss_pred             cccceEEee-cccchHHHHHHHHh-hccccccccccccccchhhcccccc---c--CCHHHHHhhCCeEEecCCCCchHh
Confidence            379999998 99999999999998 6999999887555443333332211   1  123334445788887654      


Q ss_pred             c-H-HHHHHhcccCCeEEEEcCCCCCCceEEEEeecHHHHHHHHHHHHCCCcc
Q 016265          306 Q-C-DRAVKAIKEGGTVVALTGAVTPPGFRFVVTSNGEVLKKLNPYLESGKVK  356 (392)
Q Consensus       306 ~-~-~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~l~  356 (392)
                      . + ...++.|+++..+|.++-...         .   +-+.+++.+++|++.
T Consensus       119 ~li~~~~l~~mk~~a~lIN~sRG~i---------v---de~aL~~aL~~g~i~  159 (191)
T d1gdha1         119 YFFNKATIKSLPQGAIVVNTARGDL---------V---DNELVVAALEAGRLA  159 (191)
T ss_dssp             TCBSHHHHTTSCTTEEEEECSCGGG---------B---CHHHHHHHHHHTSEE
T ss_pred             heecHHHhhCcCCccEEEecCCccc---------h---hhHHHHHHHHcCCce
Confidence            1 2 688999999998887643210         0   135667888888876

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=94.26  E-value=0.073  Score=39.81  Aligned_cols=42  Identities=12%  Similarity=0.190  Sum_probs=34.8

Q ss_pred             HHhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCc
Q 016265          225 LERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSST  268 (392)
Q Consensus       225 l~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~  268 (392)
                      ++.....++++|+|.| +|.+|+=.++.++. +|.++.++.+.+
T Consensus        14 ~~~l~~~~~~~vvVvG-gG~ig~E~A~~l~~-~g~~vt~i~~~~   55 (121)
T d1mo9a2          14 VEELDYEPGSTVVVVG-GSKTAVEYGCFFNA-TGRRTVMLVRTE   55 (121)
T ss_dssp             HHHCCSCCCSEEEEEC-CSHHHHHHHHHHHH-TTCEEEEECSSC
T ss_pred             HHHHhhCCCCEEEEEC-CCHHHHHHHHHHHh-cchhheEeeccc
Confidence            3556677899999998 99999988888877 599998888654

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=94.19  E-value=0.089  Score=45.47  Aligned_cols=94  Identities=12%  Similarity=0.124  Sum_probs=64.5

Q ss_pred             CCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEE-EeCCCCccccCCCCccEEEecCc--
Q 016265          229 GFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLA-IDYTKDNFEDLPEKFDVVYDAIG--  305 (392)
Q Consensus       229 ~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~v-i~~~~~~~~~~~~~~D~vid~~G--  305 (392)
                      ...++.+||=+| + |.|..+..+++...+.+++.++.++.-++.+++...... +..+..+..-..+.||+|+..-.  
T Consensus        81 ~~~~~~~iLDiG-c-G~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~  158 (268)
T d1p91a_          81 LDDKATAVLDIG-C-GEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYAPC  158 (268)
T ss_dssp             SCTTCCEEEEET-C-TTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEEEEESCCC
T ss_pred             cCCCCCEEEEeC-C-CCcHHHHHHHHHCCCCEEEEecchHhhhhhhhcccccccceeeehhhccCCCCCEEEEeecCCHH
Confidence            356778898887 4 447777888876446788889999988888876543322 22222222222346999997644  


Q ss_pred             cHHHHHHhcccCCeEEEEc
Q 016265          306 QCDRAVKAIKEGGTVVALT  324 (392)
Q Consensus       306 ~~~~~~~~l~~~G~iv~~g  324 (392)
                      .++++.+.|+|||+++...
T Consensus       159 ~~~e~~rvLkpgG~l~~~~  177 (268)
T d1p91a_         159 KAEELARVVKPGGWVITAT  177 (268)
T ss_dssp             CHHHHHHHEEEEEEEEEEE
T ss_pred             HHHHHHHHhCCCcEEEEEe
Confidence            5789999999999998763

>d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=94.17  E-value=0.058  Score=46.24  Aligned_cols=35  Identities=14%  Similarity=0.195  Sum_probs=29.1

Q ss_pred             eEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCccc
Q 016265          235 SILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRN  270 (392)
Q Consensus       235 ~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~  270 (392)
                      +.||+||++++|.+.+..+.. .|++|+++.++.++
T Consensus         3 vAlVTGas~GIG~aia~~la~-~G~~Vvi~~r~~~~   37 (266)
T d1mxha_           3 AAVITGGARRIGHSIAVRLHQ-QGFRVVVHYRHSEG   37 (266)
T ss_dssp             EEEETTCSSHHHHHHHHHHHH-TTCEEEEEESSCHH
T ss_pred             EEEEeCCCCHHHHHHHHHHHH-CCCEEEEEECCchH
Confidence            469999999999998777666 49999999987554

>d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=94.13  E-value=0.063  Score=43.54  Aligned_cols=90  Identities=16%  Similarity=0.135  Sum_probs=53.0

Q ss_pred             eEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeC-C-cccHHHHHhcCCcEEEeCCCC-cccc-----------CCCCccEE
Q 016265          235 SILVLNGSGGVGSLVIQLAKQVFGASRVAATS-S-TRNLEFLKSLGADLAIDYTKD-NFED-----------LPEKFDVV  300 (392)
Q Consensus       235 ~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~-~-~~~~~~~~~~G~~~vi~~~~~-~~~~-----------~~~~~D~v  300 (392)
                      +|.|.| .|-+|+..+..+......+++.+.. . ......+...+.......+.. .+.+           ...++|+|
T Consensus         3 KVaING-fGRIGR~v~Ral~~~~dievVaInd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~g~~~~~~~~vDiV   81 (178)
T d1b7go1           3 NVAVNG-YGTIGKRVADAIIKQPDMKLVGVAKTSPNYEAFIAHRRGIRIYVPQQSIKKFEESGIPVAGTVEDLIKTSDIV   81 (178)
T ss_dssp             EEEEEC-CSHHHHHHHHHHHTCTTEEEEEEECSSCSHHHHHHHHTTCCEECCGGGHHHHHTTTCCCCCCHHHHHHHCSEE
T ss_pred             EEEEEC-CCHHHHHHHHHHHhCCCCEEEEEECCCCcHHHHHhcccCcceeccCccceeccccceecCCchhhhhhcCCEE
Confidence            588998 9999999999887643456666643 3 233444444443322111110 0111           11368999


Q ss_pred             EecCcc---HHHHHHhcccCCeEEEEcC
Q 016265          301 YDAIGQ---CDRAVKAIKEGGTVVALTG  325 (392)
Q Consensus       301 id~~G~---~~~~~~~l~~~G~iv~~g~  325 (392)
                      +||+|.   .+.+-.+++.|-+++..+.
T Consensus        82 iecTG~f~~~e~a~~hl~~G~KvIi~~~  109 (178)
T d1b7go1          82 VDTTPNGVGAQYKPIYLQLQRNAIFQGG  109 (178)
T ss_dssp             EECCSTTHHHHHHHHHHHTTCEEEECTT
T ss_pred             EECCCCcCCHHHHHHHHHcCCEEEEECC
Confidence            999994   3566667766656665444

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=94.12  E-value=0.053  Score=44.36  Aligned_cols=107  Identities=19%  Similarity=0.161  Sum_probs=75.2

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCCccccCCCCccEEEecCc------
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFEDLPEKFDVVYDAIG------  305 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~~~~~~~D~vid~~G------  305 (392)
                      .|.+|.|+| .|.+|...++.++. +|.+++..++........+..+....     .+..+.-+..|+|+-+..      
T Consensus        43 ~~~~vgiiG-~G~IG~~va~~l~~-fg~~v~~~d~~~~~~~~~~~~~~~~~-----~~l~~~l~~sD~v~~~~plt~~T~  115 (188)
T d2naca1          43 EAMHVGTVA-AGRIGLAVLRRLAP-FDVHLHYTDRHRLPESVEKELNLTWH-----ATREDMYPVCDVVTLNCPLHPETE  115 (188)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHGG-GTCEEEEECSSCCCHHHHHHHTCEEC-----SSHHHHGGGCSEEEECSCCCTTTT
T ss_pred             cccceeecc-ccccchhhhhhhhc-cCceEEEEeecccccccccccccccc-----CCHHHHHHhccchhhcccccccch
Confidence            578999998 99999999999998 69999999886655555555553221     122333456788887654      


Q ss_pred             c--HHHHHHhcccCCeEEEEcCCCCCCceEEEEeecHHHHHHHHHHHHCCCccc
Q 016265          306 Q--CDRAVKAIKEGGTVVALTGAVTPPGFRFVVTSNGEVLKKLNPYLESGKVKP  357 (392)
Q Consensus       306 ~--~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~l~~  357 (392)
                      .  -...++.|+++..+|.++....         .   +-+.+++.+++|++..
T Consensus       116 ~li~~~~l~~mk~ga~lIN~aRG~i---------v---d~~aL~~aL~~g~i~g  157 (188)
T d2naca1         116 HMINDETLKLFKRGAYIVNTARGKL---------C---DRDAVARALESGRLAG  157 (188)
T ss_dssp             TCBSHHHHTTSCTTEEEEECSCGGG---------B---CHHHHHHHHHTTSEEE
T ss_pred             hhhHHHHHHhCCCCCEEEecCchhh---------h---hHHHHHHHHhCCCcee
Confidence            1  2788999999888876643220         0   1356778899998863

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=94.10  E-value=0.015  Score=47.28  Aligned_cols=78  Identities=17%  Similarity=0.270  Sum_probs=47.2

Q ss_pred             HHHHh-cCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHH-hc----CCcE--EEeCCCCccccCC
Q 016265          223 EGLER-TGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLK-SL----GADL--AIDYTKDNFEDLP  294 (392)
Q Consensus       223 ~al~~-~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~-~~----G~~~--vi~~~~~~~~~~~  294 (392)
                      .+|+. ..--.|++|+|+| +|+++.+++..+.. .| ++.++.++.+|.+.+. ++    ..+.  .++.  .++....
T Consensus         7 ~~l~~~~~~~~~k~vlIlG-aGG~arai~~aL~~-~~-~i~I~nR~~~ka~~l~~~~~~~~~~~~~~~~~~--~~~~~~~   81 (177)
T d1nvta1           7 MALEEEIGRVKDKNIVIYG-AGGAARAVAFELAK-DN-NIIIANRTVEKAEALAKEIAEKLNKKFGEEVKF--SGLDVDL   81 (177)
T ss_dssp             HHHHHHHCCCCSCEEEEEC-CSHHHHHHHHHHTS-SS-EEEEECSSHHHHHHHHHHHHHHHTCCHHHHEEE--ECTTCCC
T ss_pred             HHHHHhCCCcCCCEEEEEC-CcHHHHHHHHHHcc-cc-ceeeehhhhhHHHHHHHHHHHhhchhhhhhhhh--hhhhhcc
Confidence            34533 3335788999998 99999988766644 24 7778888888766542 22    1111  0111  1122234


Q ss_pred             CCccEEEecCc
Q 016265          295 EKFDVVYDAIG  305 (392)
Q Consensus       295 ~~~D~vid~~G  305 (392)
                      ..+|++++|+.
T Consensus        82 ~~~dliIn~tp   92 (177)
T d1nvta1          82 DGVDIIINATP   92 (177)
T ss_dssp             TTCCEEEECSC
T ss_pred             chhhhhccCCc
Confidence            56899999975

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=93.98  E-value=0.11  Score=41.00  Aligned_cols=84  Identities=15%  Similarity=0.247  Sum_probs=57.8

Q ss_pred             eEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCCccccCCCCccEEEecCcc---HH---
Q 016265          235 SILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFEDLPEKFDVVYDAIGQ---CD---  308 (392)
Q Consensus       235 ~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~~~~~~~D~vid~~G~---~~---  308 (392)
                      +|.|+| .|.+|...+.-+.. .|.+|++.++++++.+.+++.|+...     .+..+..+..|++|-|+..   .+   
T Consensus         2 kIgiIG-lG~MG~~~A~~L~~-~G~~V~~~d~~~~~~~~~~~~~~~~~-----~~~~e~~~~~d~ii~~v~~~~~v~~v~   74 (161)
T d1vpda2           2 KVGFIG-LGIMGKPMSKNLLK-AGYSLVVSDRNPEAIADVIAAGAETA-----STAKAIAEQCDVIITMLPNSPHVKEVA   74 (161)
T ss_dssp             EEEEEC-CSTTHHHHHHHHHH-TTCEEEEECSCHHHHHHHHHTTCEEC-----SSHHHHHHHCSEEEECCSSHHHHHHHH
T ss_pred             EEEEEe-hhHHHHHHHHHHHH-CCCeEEEEeCCcchhHHHHHhhhhhc-----ccHHHHHhCCCeEEEEcCCHHHHHHHH
Confidence            588998 99999887765555 49999999999999999988876432     1223334467888888763   12   


Q ss_pred             ----HHHHhcccCCeEEEEcC
Q 016265          309 ----RAVKAIKEGGTVVALTG  325 (392)
Q Consensus       309 ----~~~~~l~~~G~iv~~g~  325 (392)
                          .....++++-.++.++.
T Consensus        75 ~~~~~~~~~~~~g~iiid~sT   95 (161)
T d1vpda2          75 LGENGIIEGAKPGTVLIDMSS   95 (161)
T ss_dssp             HSTTCHHHHCCTTCEEEECSC
T ss_pred             hCCcchhhccCCCCEEEECCC
Confidence                23445566666665543

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=93.97  E-value=0.041  Score=47.65  Aligned_cols=91  Identities=15%  Similarity=0.174  Sum_probs=60.5

Q ss_pred             CCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHh----cCCc---EEEeCCCCccccCCCCccEEE
Q 016265          229 GFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKS----LGAD---LAIDYTKDNFEDLPEKFDVVY  301 (392)
Q Consensus       229 ~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~----~G~~---~vi~~~~~~~~~~~~~~D~vi  301 (392)
                      .+++|++||-.|  .++|..++.+|+. .+++|++++.++...+.+++    .|.+   .+++.+...+.. ...+|.|+
T Consensus       104 ~~~~g~~VlD~~--aG~G~~~l~~a~~-~~~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~~~~~~-~~~~D~Ii  179 (260)
T d2frna1         104 VAKPDELVVDMF--AGIGHLSLPIAVY-GKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG-ENIADRIL  179 (260)
T ss_dssp             HCCTTCEEEETT--CTTTTTHHHHHHH-TCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC-CSCEEEEE
T ss_pred             hcCCccEEEECc--ceEcHHHHHHHHh-CCcEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcchHHhcc-CCCCCEEE
Confidence            368999999986  4567788888886 45789999999988777753    3532   233333222221 23588665


Q ss_pred             e-cCc----cHHHHHHhcccCCeEEEE
Q 016265          302 D-AIG----QCDRAVKAIKEGGTVVAL  323 (392)
Q Consensus       302 d-~~G----~~~~~~~~l~~~G~iv~~  323 (392)
                      - ...    .++.+++.+++||.+...
T Consensus       180 ~~~p~~~~~~l~~a~~~l~~gG~lh~~  206 (260)
T d2frna1         180 MGYVVRTHEFIPKALSIAKDGAIIHYH  206 (260)
T ss_dssp             ECCCSSGGGGHHHHHHHEEEEEEEEEE
T ss_pred             ECCCCchHHHHHHHHhhcCCCCEEEEE
Confidence            3 322    357899999999987543

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.97  E-value=0.062  Score=48.07  Aligned_cols=100  Identities=15%  Similarity=0.235  Sum_probs=64.2

Q ss_pred             HHHHHHhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCC-eEEEEeCCcccHHHHHh-----------cCCc----EEEe
Q 016265          221 AYEGLERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGA-SRVAATSSTRNLEFLKS-----------LGAD----LAID  284 (392)
Q Consensus       221 a~~al~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~-~vv~~~~~~~~~~~~~~-----------~G~~----~vi~  284 (392)
                      ..+.++..+++++++|+=+|  .|.|..+.++|+. .++ +++.++.++...+.+++           +|..    ..+.
T Consensus       140 ~~~~~~~~~l~~~~~vlD~G--cG~G~~~~~~a~~-~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~  216 (328)
T d1nw3a_         140 VAQMIDEIKMTDDDLFVDLG--SGVGQVVLQVAAA-TNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLER  216 (328)
T ss_dssp             HHHHHHHSCCCTTCEEEEET--CTTSHHHHHHHHH-CCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEE
T ss_pred             HHHHHHHcCCCCCCEEEEcC--CCCCHHHHHHHHH-hCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEE
Confidence            34456788999999999987  5679999999987 576 58888888876665532           2211    1221


Q ss_pred             C--CCCccccCCCCccEEEecCc--------cHHHHHHhcccCCeEEEE
Q 016265          285 Y--TKDNFEDLPEKFDVVYDAIG--------QCDRAVKAIKEGGTVVAL  323 (392)
Q Consensus       285 ~--~~~~~~~~~~~~D~vid~~G--------~~~~~~~~l~~~G~iv~~  323 (392)
                      .  .+..+.+....+|+|+-..-        .+...++.|+|||++|..
T Consensus       217 gd~~~~~~~~~~~~advi~~~~~~f~~~~~~~l~e~~r~LKpGg~iv~~  265 (328)
T d1nw3a_         217 GDFLSEEWRERIANTSVIFVNNFAFGPEVDHQLKERFANMKEGGRIVSS  265 (328)
T ss_dssp             CCTTSHHHHHHHHHCSEEEECCTTTCHHHHHHHHHHHTTCCTTCEEEES
T ss_pred             CcccccccccccCcceEEEEcceecchHHHHHHHHHHHhCCCCcEEEEe
Confidence            1  11112211123578774321        146678889999999875

>d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: TAT-interacting protein TIP30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.97  E-value=0.028  Score=47.55  Aligned_cols=72  Identities=18%  Similarity=0.323  Sum_probs=46.1

Q ss_pred             CCeEEEEcCCCcHHHHHHHHHHHhcCC--eEEEEeCCcccHHHHHhcCCcEE-EeCCC-CccccCCCCccEEEecCc
Q 016265          233 GKSILVLNGSGGVGSLVIQLAKQVFGA--SRVAATSSTRNLEFLKSLGADLA-IDYTK-DNFEDLPEKFDVVYDAIG  305 (392)
Q Consensus       233 g~~VlI~Ga~G~vG~~aiqlak~~~G~--~vv~~~~~~~~~~~~~~~G~~~v-i~~~~-~~~~~~~~~~D~vid~~G  305 (392)
                      +.+|||+||+|-+|...++.+... |.  +++++++++.+...-..-..... .|..+ +++.+...++|++|.|.|
T Consensus        14 ~k~IlItGaTG~iG~~l~~~Ll~~-g~~~~v~~~~R~~~~~~~~~~~~i~~~~~D~~~~~~~~~~~~~~d~vi~~~~   89 (232)
T d2bkaa1          14 NKSVFILGASGETGRVLLKEILEQ-GLFSKVTLIGRRKLTFDEEAYKNVNQEVVDFEKLDDYASAFQGHDVGFCCLG   89 (232)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHH-TCCSEEEEEESSCCCCCSGGGGGCEEEECCGGGGGGGGGGGSSCSEEEECCC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhC-CCCCEEEEEecChhhhcccccceeeeeeeccccccccccccccccccccccc
Confidence            468999999999999988887663 64  68888875543222111112221 23322 234444568999999987

>d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Methanothermus fervidus [TaxId: 2180]

Probab=93.96  E-value=0.076  Score=42.72  Aligned_cols=92  Identities=16%  Similarity=0.180  Sum_probs=57.5

Q ss_pred             eEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeC-C-cccHHHHHhcCCcEEEeCCCCc--ccc-----------CCCCccE
Q 016265          235 SILVLNGSGGVGSLVIQLAKQVFGASRVAATS-S-TRNLEFLKSLGADLAIDYTKDN--FED-----------LPEKFDV  299 (392)
Q Consensus       235 ~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~-~-~~~~~~~~~~G~~~vi~~~~~~--~~~-----------~~~~~D~  299 (392)
                      +|.|.| -|-+|.....++......+++.+-. + ......+..++.+......+..  +.+           ..+++|+
T Consensus         3 ~VgING-fGRIGR~v~R~l~~~~di~vvaInd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~vDv   81 (171)
T d1cf2o1           3 AVAING-YGTVGKRVADAIAQQDDMKVIGVSKTRPDFEARMALKKGYDLYVAIPERVKLFEKAGIEVAGTVDDMLDEADI   81 (171)
T ss_dssp             EEEEEC-CSHHHHHHHHHHHTSSSEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHTTCCCCEEHHHHHHTCSE
T ss_pred             EEEEEc-CcHHHHHHHHHHHhCCCceEEEEecCCcHHHHHHHHhcCCceEecccccceeecccCcccCCChhHhhcCCCE
Confidence            689998 9999999998876532345555532 2 3344566666655433222111  111           1237999


Q ss_pred             EEecCcc---HHHHHHhcccCCeEEEEcCCC
Q 016265          300 VYDAIGQ---CDRAVKAIKEGGTVVALTGAV  327 (392)
Q Consensus       300 vid~~G~---~~~~~~~l~~~G~iv~~g~~~  327 (392)
                      |+||+|.   .+.+-..+..|-++|..+.+.
T Consensus        82 ViEcTG~f~~~~~~~~hl~~G~K~vi~~~~~  112 (171)
T d1cf2o1          82 VIDCTPEGIGAKNLKMYKEKGIKAIFQGGEK  112 (171)
T ss_dssp             EEECCSTTHHHHHHHHHHHTTCEEEECTTSC
T ss_pred             EEEccCCCCCHHHHHHHHHcCCCEEEECCCC
Confidence            9999994   356777788887877665543

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=93.82  E-value=0.037  Score=45.26  Aligned_cols=104  Identities=25%  Similarity=0.303  Sum_probs=72.6

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCCccccCCCCccEEEecCc------
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFEDLPEKFDVVYDAIG------  305 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~~~~~~~D~vid~~G------  305 (392)
                      .|.++.|+| .|.+|...+++++. +|+++++.++...+.. ....+...      .++.++-...|+|+-++.      
T Consensus        43 ~~k~vgiiG-~G~IG~~va~~~~~-fg~~v~~~d~~~~~~~-~~~~~~~~------~~l~ell~~sDiv~~~~Plt~~T~  113 (184)
T d1ygya1          43 FGKTVGVVG-LGRIGQLVAQRIAA-FGAYVVAYDPYVSPAR-AAQLGIEL------LSLDDLLARADFISVHLPKTPETA  113 (184)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHT-TTCEEEEECTTSCHHH-HHHHTCEE------CCHHHHHHHCSEEEECCCCSTTTT
T ss_pred             cceeeeecc-ccchhHHHHHHhhh-ccceEEeecCCCChhH-HhhcCcee------ccHHHHHhhCCEEEEcCCCCchhh
Confidence            578999998 99999999999998 7999998887544332 33333321      123344446799988754      


Q ss_pred             c-H-HHHHHhcccCCeEEEEcCCCCCCceEEEEeecHHHHHHHHHHHHCCCcc
Q 016265          306 Q-C-DRAVKAIKEGGTVVALTGAVTPPGFRFVVTSNGEVLKKLNPYLESGKVK  356 (392)
Q Consensus       306 ~-~-~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~l~  356 (392)
                      . + ...++.|+++..+|.++-...         .+   -+.+.+.+.+|++.
T Consensus       114 ~lin~~~l~~mk~~a~lIN~sRG~i---------Vd---e~aL~~aL~~~~i~  154 (184)
T d1ygya1         114 GLIDKEALAKTKPGVIIVNAARGGL---------VD---EAALADAITGGHVR  154 (184)
T ss_dssp             TCBCHHHHTTSCTTEEEEECSCTTS---------BC---HHHHHHHHHTSSEE
T ss_pred             hhhhHHHHhhhCCCceEEEecchhh---------hh---hHHHHHHHhcCcEe
Confidence            1 2 688999999998887754321         11   25667889999986

>d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]

Probab=93.80  E-value=0.057  Score=46.43  Aligned_cols=75  Identities=24%  Similarity=0.294  Sum_probs=46.5

Q ss_pred             CCCCCeEEEEcCCC--cHHHHHHHHHHHhcCCeEEEEeCCcccH-HHH-HhcCCcE---EEeCCCCc-ccc---------
Q 016265          230 FSAGKSILVLNGSG--GVGSLVIQLAKQVFGASRVAATSSTRNL-EFL-KSLGADL---AIDYTKDN-FED---------  292 (392)
Q Consensus       230 ~~~g~~VlI~Ga~G--~vG~~aiqlak~~~G~~vv~~~~~~~~~-~~~-~~~G~~~---vi~~~~~~-~~~---------  292 (392)
                      .-.|+++||+||+|  ++|.+.++-+.. .|++|+++.++.+++ +.+ ++++...   ..|..++. ...         
T Consensus         3 ~l~gK~~lItGaag~~GIG~aiA~~la~-~Ga~Vil~~~~~~~~~~~~~~~~~~~~~~~~~dv~~~~~~~~~~~~v~~~~   81 (268)
T d2h7ma1           3 LLDGKRILVSGIITDSSIAFHIARVAQE-QGAQLVLTGFDRLRLIQRITDRLPAKAPLLELDVQNEEHLASLAGRVTEAI   81 (268)
T ss_dssp             TTTTCEEEECCCSSTTCHHHHHHHHHHH-TTCEEEEEECSCHHHHHHHHTTSSSCCCEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHHH-cCCEEEEEeCChHHHHHHHHHHcCCceeeEeeecccccccccccchhhhcc
Confidence            44689999999654  699987765444 499999988877665 323 4455332   22322211 111         


Q ss_pred             -CCCCccEEEecCc
Q 016265          293 -LPEKFDVVYDAIG  305 (392)
Q Consensus       293 -~~~~~D~vid~~G  305 (392)
                       ....+|+++++.|
T Consensus        82 ~~~~~ld~~i~~ag   95 (268)
T d2h7ma1          82 GAGNKLDGVVHSIG   95 (268)
T ss_dssp             CTTCCEEEEEECCC
T ss_pred             ccCCCcceeeeccc
Confidence             1346899998876

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.69  E-value=0.13  Score=45.54  Aligned_cols=88  Identities=24%  Similarity=0.288  Sum_probs=53.7

Q ss_pred             CCCCCCeEEEEcCCCcHHHHHHHHHHHhcCC-eEEEEeCCcccHHH----HHhcCCc---EEEeCCCCccccCCCCccEE
Q 016265          229 GFSAGKSILVLNGSGGVGSLVIQLAKQVFGA-SRVAATSSTRNLEF----LKSLGAD---LAIDYTKDNFEDLPEKFDVV  300 (392)
Q Consensus       229 ~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~-~vv~~~~~~~~~~~----~~~~G~~---~vi~~~~~~~~~~~~~~D~v  300 (392)
                      .+.+|++||-+| +|. |.+++.+|++  |+ +|++++.++. ...    ++..|..   .++..+..++....+.+|+|
T Consensus        30 ~~~~~~~VLDiG-cG~-G~ls~~aa~~--Ga~~V~avd~s~~-~~~a~~~~~~n~~~~~v~~~~~~~~~~~~~~~~~D~i  104 (316)
T d1oria_          30 HLFKDKVVLDVG-SGT-GILCMFAAKA--GARKVIGIECSSI-SDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDII  104 (316)
T ss_dssp             HHHTTCEEEEET-CTT-SHHHHHHHHT--TCSEEEEEECSTT-HHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEE
T ss_pred             ccCCcCEEEEEe-cCC-cHHHHHHHHh--CCCEEEEEcCcHH-HhhhhhHHHHhCCccccceEeccHHHcccccceeEEE
Confidence            456899999997 554 8888888874  65 5777776653 222    2334432   23333333333334579998


Q ss_pred             Eec-Cc-------cH----HHHHHhcccCCeEE
Q 016265          301 YDA-IG-------QC----DRAVKAIKEGGTVV  321 (392)
Q Consensus       301 id~-~G-------~~----~~~~~~l~~~G~iv  321 (392)
                      +.- .+       .+    ...-++|+|||+++
T Consensus       105 vs~~~~~~l~~e~~~~~~l~~~~r~Lkp~G~ii  137 (316)
T d1oria_         105 ISEWMGYCLFYESMLNTVLHARDKWLAPDGLIF  137 (316)
T ss_dssp             EECCCBBTBTBTCCHHHHHHHHHHHEEEEEEEE
T ss_pred             eeeeeeeeeccHHHHHHHHHHHHhcCCCCeEEE
Confidence            753 33       12    34557899999986

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=93.69  E-value=0.041  Score=45.36  Aligned_cols=105  Identities=24%  Similarity=0.290  Sum_probs=70.7

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCCccccCCCCccEEEecCc------
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFEDLPEKFDVVYDAIG------  305 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~~~~~~~D~vid~~G------  305 (392)
                      .|.+|.|+| .|.+|...+++++. +|+++++.++...+. .....+....     .++.++-...|+|+-++.      
T Consensus        48 ~gktvgIiG-~G~IG~~va~~l~~-fg~~v~~~d~~~~~~-~~~~~~~~~~-----~~l~~ll~~sD~i~~~~plt~~T~  119 (193)
T d1mx3a1          48 RGETLGIIG-LGRVGQAVALRAKA-FGFNVLFYDPYLSDG-VERALGLQRV-----STLQDLLFHSDCVTLHCGLNEHNH  119 (193)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHT-TTCEEEEECTTSCTT-HHHHHTCEEC-----SSHHHHHHHCSEEEECCCCCTTCT
T ss_pred             eCceEEEec-cccccccceeeeec-cccceeeccCccccc-chhhhccccc-----cchhhccccCCEEEEeecccccch
Confidence            578999998 99999999999998 699999988754332 2223333211     123333345688877654      


Q ss_pred             c-H-HHHHHhcccCCeEEEEcCCCCCCceEEEEeecHHHHHHHHHHHHCCCcc
Q 016265          306 Q-C-DRAVKAIKEGGTVVALTGAVTPPGFRFVVTSNGEVLKKLNPYLESGKVK  356 (392)
Q Consensus       306 ~-~-~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~l~  356 (392)
                      . + ...++.|+++..+|.++-...         .   +-+.+.+.+++|++.
T Consensus       120 ~li~~~~l~~mk~~a~lIN~sRG~i---------v---de~aL~~aL~~~~i~  160 (193)
T d1mx3a1         120 HLINDFTVKQMRQGAFLVNTARGGL---------V---DEKALAQALKEGRIR  160 (193)
T ss_dssp             TSBSHHHHTTSCTTEEEEECSCTTS---------B---CHHHHHHHHHHTSEE
T ss_pred             hhhhHHHHhccCCCCeEEecCCceE---------E---cHHHHHHHHHcCCce
Confidence            1 1 678899999998887753221         1   135667788888875

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=93.59  E-value=0.079  Score=44.29  Aligned_cols=93  Identities=9%  Similarity=0.150  Sum_probs=61.1

Q ss_pred             CCCCCCeEEEEcCCCcHHHHHHHHHHHh--cCCeEEEEeCCcccHHHHHh----cCCcEEEeCCCCccccC-CCCccEEE
Q 016265          229 GFSAGKSILVLNGSGGVGSLVIQLAKQV--FGASRVAATSSTRNLEFLKS----LGADLAIDYTKDNFEDL-PEKFDVVY  301 (392)
Q Consensus       229 ~~~~g~~VlI~Ga~G~vG~~aiqlak~~--~G~~vv~~~~~~~~~~~~~~----~G~~~vi~~~~~~~~~~-~~~~D~vi  301 (392)
                      .++++.+||=+| + |.|..+..+++..  .+++++.++.|++-++.+++    .+....+.....+..+. ...+|+++
T Consensus        36 ~~~~~~~vLDlG-C-GtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~i~  113 (225)
T d1im8a_          36 FVTADSNVYDLG-C-SRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVI  113 (225)
T ss_dssp             HCCTTCEEEEES-C-TTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTCCCCSEEEEE
T ss_pred             hcCCCCEEEEec-c-chhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhccccccceeeE
Confidence            368899999997 4 4587788888742  37899999999988887764    23322222222222222 24567766


Q ss_pred             ecCc-----------cHHHHHHhcccCCeEEEE
Q 016265          302 DAIG-----------QCDRAVKAIKEGGTVVAL  323 (392)
Q Consensus       302 d~~G-----------~~~~~~~~l~~~G~iv~~  323 (392)
                      -...           .++.+.+.|+|||.++..
T Consensus       114 ~~~~l~~~~~~d~~~~l~~i~~~LkpgG~li~~  146 (225)
T d1im8a_         114 LNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLS  146 (225)
T ss_dssp             EESCGGGSCGGGHHHHHHHHHHHEEEEEEEEEE
T ss_pred             EeeeccccChhhHHHHHHHHHHhCCCCceeecc
Confidence            5432           157888999999999865

>d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative oxidoreductase VCA1048
species: Vibrio cholerae [TaxId: 666]

Probab=93.49  E-value=0.44  Score=37.50  Aligned_cols=84  Identities=14%  Similarity=0.084  Sum_probs=52.6

Q ss_pred             eEEEEcCCCcHHHH-HHHHHHHhcCCeEEEEeCCcccHHHH-HhcCCcEEEeCCCCccccCCCCccEEEecCc---cHHH
Q 016265          235 SILVLNGSGGVGSL-VIQLAKQVFGASRVAATSSTRNLEFL-KSLGADLAIDYTKDNFEDLPEKFDVVYDAIG---QCDR  309 (392)
Q Consensus       235 ~VlI~Ga~G~vG~~-aiqlak~~~G~~vv~~~~~~~~~~~~-~~~G~~~vi~~~~~~~~~~~~~~D~vid~~G---~~~~  309 (392)
                      +|.|+| +|.+|.- .+...+...+..+++++.++++.+.+ ++++...+++.-++-+   ...+|+|+-|+.   ..+.
T Consensus         3 rvgiiG-~G~~~~~~~~~~l~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ll---~~~iD~V~I~tp~~~H~~~   78 (167)
T d1xeaa1           3 KIAMIG-LGDIAQKAYLPVLAQWPDIELVLCTRNPKVLGTLATRYRVSATCTDYRDVL---QYGVDAVMIHAATDVHSTL   78 (167)
T ss_dssp             EEEEEC-CCHHHHHTHHHHHTTSTTEEEEEECSCHHHHHHHHHHTTCCCCCSSTTGGG---GGCCSEEEECSCGGGHHHH
T ss_pred             EEEEEc-CCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHhcccccccccHHHhc---ccccceecccccccccccc
Confidence            588998 8999954 45555443355666667777766555 5677655443222212   236899999987   3577


Q ss_pred             HHHhcccCCeEEEE
Q 016265          310 AVKAIKEGGTVVAL  323 (392)
Q Consensus       310 ~~~~l~~~G~iv~~  323 (392)
                      +.+++..| +=|.+
T Consensus        79 ~~~al~~g-k~V~~   91 (167)
T d1xeaa1          79 AAFFLHLG-IPTFV   91 (167)
T ss_dssp             HHHHHHTT-CCEEE
T ss_pred             cccccccc-ccccc
Confidence            77777765 43444

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=93.33  E-value=0.19  Score=40.84  Aligned_cols=93  Identities=19%  Similarity=0.243  Sum_probs=60.9

Q ss_pred             HhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHh----cCCc----EEEeCCCCccccCCCCc
Q 016265          226 ERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKS----LGAD----LAIDYTKDNFEDLPEKF  297 (392)
Q Consensus       226 ~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~----~G~~----~vi~~~~~~~~~~~~~~  297 (392)
                      +.....++++||=+|  +|.|..++.+++.  +.++++++.++...+.+++    .+..    .++..+.... ...+.+
T Consensus        46 ~~l~~~~~~~VLDiG--cG~G~~~~~la~~--~~~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~~-~~~~~f  120 (194)
T d1dusa_          46 ENVVVDKDDDILDLG--CGYGVIGIALADE--VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYEN-VKDRKY  120 (194)
T ss_dssp             HHCCCCTTCEEEEET--CTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTT-CTTSCE
T ss_pred             HhCCcCCCCeEEEEe--ecCChhHHHHHhh--ccccceeeeccccchhHHHHHHHhCCccceEEEEEcchhhh-hccCCc
Confidence            566788999999997  4457778888863  7889999988887777753    3322    1222221111 113479


Q ss_pred             cEEEecC----c-c-----HHHHHHhcccCCeEEEE
Q 016265          298 DVVYDAI----G-Q-----CDRAVKAIKEGGTVVAL  323 (392)
Q Consensus       298 D~vid~~----G-~-----~~~~~~~l~~~G~iv~~  323 (392)
                      |+|+-..    + .     ++.+.+.|+|||+++..
T Consensus       121 D~Ii~~~p~~~~~~~~~~~l~~~~~~LkpgG~l~i~  156 (194)
T d1dusa_         121 NKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIWVV  156 (194)
T ss_dssp             EEEEECCCSTTCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             eEEEEcccEEecchhhhhHHHHHHHhcCcCcEEEEE
Confidence            9998632    2 1     46778899999998643

>d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=93.13  E-value=0.056  Score=45.59  Aligned_cols=36  Identities=25%  Similarity=0.281  Sum_probs=29.9

Q ss_pred             CeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCccc
Q 016265          234 KSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRN  270 (392)
Q Consensus       234 ~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~  270 (392)
                      +++||+||++++|.+.++.... .|++|+++++++++
T Consensus         2 K~alITGas~GIG~aiA~~la~-~Ga~V~i~~~~~~~   37 (241)
T d1uaya_           2 RSALVTGGASGLGRAAALALKA-RGYRVVVLDLRREG   37 (241)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHH-HTCEEEEEESSCCS
T ss_pred             CEEEEeCCCCHHHHHHHHHHHH-CCCEEEEEECCccc
Confidence            5789999999999997776656 49999999987654

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=93.08  E-value=0.1  Score=45.34  Aligned_cols=93  Identities=17%  Similarity=0.234  Sum_probs=62.4

Q ss_pred             CCCCCCeEEEEcCCCcHHHHHHHHHHHhc-CCeEEEEeCCcccHHHHHh----cCCcEEEe-CCCCccccCCCCccEEEe
Q 016265          229 GFSAGKSILVLNGSGGVGSLVIQLAKQVF-GASRVAATSSTRNLEFLKS----LGADLAID-YTKDNFEDLPEKFDVVYD  302 (392)
Q Consensus       229 ~~~~g~~VlI~Ga~G~vG~~aiqlak~~~-G~~vv~~~~~~~~~~~~~~----~G~~~vi~-~~~~~~~~~~~~~D~vid  302 (392)
                      ++.+..+||=+| +| .|..+..+++... +.+++.++.++.-++.+++    .+.+..+. .+-..+ ...+.+|+|+.
T Consensus        24 ~~~~~~~ILDiG-cG-~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~f~~~d~~~~-~~~~~fD~v~~  100 (281)
T d2gh1a1          24 KITKPVHIVDYG-CG-YGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEI-ELNDKYDIAIC  100 (281)
T ss_dssp             CCCSCCEEEEET-CT-TTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSSEEEEEESCTTTC-CCSSCEEEEEE
T ss_pred             ccCCcCEEEEec-Cc-CCHHHHHHHHhCCCCCEEEEEecchhHhhhhhcccccccccccccccccccc-cccCCceEEEE
Confidence            567778999887 55 5888888887531 4678899999887777754    34332221 111111 12457999986


Q ss_pred             cCc---------cHHHHHHhcccCCeEEEEc
Q 016265          303 AIG---------QCDRAVKAIKEGGTVVALT  324 (392)
Q Consensus       303 ~~G---------~~~~~~~~l~~~G~iv~~g  324 (392)
                      .-.         .++.+.+.|+|||+++...
T Consensus       101 ~~~l~~~~d~~~~l~~~~~~LkpgG~lii~~  131 (281)
T d2gh1a1         101 HAFLLHMTTPETMLQKMIHSVKKGGKIICFE  131 (281)
T ss_dssp             ESCGGGCSSHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             ehhhhcCCCHHHHHHHHHHHcCcCcEEEEEE
Confidence            532         1578889999999998764

>d2bhsa1 c.79.1.1 (A:2-293) O-acetylserine sulfhydrylase (Cysteine synthase) {Escherichia coli, isoform B (CysM) [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Escherichia coli, isoform B (CysM) [TaxId: 562]

Probab=93.05  E-value=0.61  Score=40.27  Aligned_cols=98  Identities=17%  Similarity=0.249  Sum_probs=68.1

Q ss_pred             HHHhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeC---CcccHHHHHhcCCcEEEeCCCCccc---------
Q 016265          224 GLERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATS---STRNLEFLKSLGADLAIDYTKDNFE---------  291 (392)
Q Consensus       224 al~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~---~~~~~~~~~~~G~~~vi~~~~~~~~---------  291 (392)
                      +++....+++.+|+.. .+|-.|++++..|+.+ |.+.+++..   ++.|.+.++.+|++.++...+.++.         
T Consensus        51 a~~~g~~~~~~~vv~a-SsGN~g~a~A~~a~~~-G~~~~i~~p~~~~~~k~~~~~~~GA~v~~v~~~~~~~~a~~~~~~~  128 (292)
T d2bhsa1          51 AEKRGEIKPGDVLIEA-TSGNTGIALAMIAALK-GYRMKLLMPDNMSQERRAAMRAYGAELILVTKEQGMEGARDLALEM  128 (292)
T ss_dssp             HHHTTSCCTTSEEEEE-CCSHHHHHHHHHHHHH-TCEEEEEEESCCCHHHHHHHHHTTCEEEEECTTTHHHHHHHHHHHH
T ss_pred             HHHhCCcCCCceeeee-cccchhHHHHHHHHhc-CcceEeeeccCchhhhhHHHHHhCCCcceeecccchHHHHHHHhhc
Confidence            3445556667666555 4999999999999985 998887764   6678889999999765433222110         


Q ss_pred             -------------------------------cCCCCccEEEecCcc------HHHHHHhcccCCeEEEE
Q 016265          292 -------------------------------DLPEKFDVVYDAIGQ------CDRAVKAIKEGGTVVAL  323 (392)
Q Consensus       292 -------------------------------~~~~~~D~vid~~G~------~~~~~~~l~~~G~iv~~  323 (392)
                                                     +..+.+|.++-++|.      +...++...+..+++.+
T Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~a~Ei~~q~~~~~d~vv~~~G~Gg~~~G~~~~~k~~~~~~~i~~V  197 (292)
T d2bhsa1         129 ANRGEGKLLDQFNNPDNPYAHYTTTGPEIWQQTGGRITHFVSSMGTTGTITGVSRFMREQSKPVTIVGL  197 (292)
T ss_dssp             HHHTSSEECCTTTCTHHHHHHHHTHHHHHHHHTTTCCCEEEEECSSSHHHHHHHHHHHTSSSCCEEEEE
T ss_pred             cccccccccCCCchhcchhhHHHHHHHHhHHhcCCCCCcccccCCCccchhhhhhhhhhccCcceEEEe
Confidence                                           002348999998772      45677777888888766

>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-glucuronate decarboxylase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.96  E-value=0.056  Score=47.72  Aligned_cols=69  Identities=22%  Similarity=0.173  Sum_probs=43.6

Q ss_pred             CeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeC-CcccHHHHHhcCCc---EEEeCCCCccccCCCCccEEEecCc
Q 016265          234 KSILVLNGSGGVGSLVIQLAKQVFGASRVAATS-STRNLEFLKSLGAD---LAIDYTKDNFEDLPEKFDVVYDAIG  305 (392)
Q Consensus       234 ~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~-~~~~~~~~~~~G~~---~vi~~~~~~~~~~~~~~D~vid~~G  305 (392)
                      ++|||+||+|-+|...+..+.. .|.+|+++++ +..+.+.+...-..   .+.+.+  .......++|+||.+.+
T Consensus         2 KKIlVtG~sGfiG~~lv~~L~~-~g~~V~~~d~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~~~d~VihlAa   74 (312)
T d2b69a1           2 KRILITGGAGFVGSHLTDKLMM-DGHEVTVVDNFFTGRKRNVEHWIGHENFELINHD--VVEPLYIEVDQIYHLAS   74 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHH-TTCEEEEEECCSSCCGGGTGGGTTCTTEEEEECC--TTSCCCCCCSEEEECCS
T ss_pred             CEEEEECCCcHHHHHHHHHHHH-CcCEEEEEeCCCcCCHHHHHHhcCCCceEEEehH--HHHHHHcCCCEEEECcc
Confidence            5799999999999998887766 4999998875 33333333222111   122221  12233347999998754

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=92.96  E-value=0.12  Score=43.95  Aligned_cols=91  Identities=14%  Similarity=0.188  Sum_probs=57.8

Q ss_pred             CCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHh----cCCc-EE--EeCCCC-ccccCCCCccEEE
Q 016265          230 FSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKS----LGAD-LA--IDYTKD-NFEDLPEKFDVVY  301 (392)
Q Consensus       230 ~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~----~G~~-~v--i~~~~~-~~~~~~~~~D~vi  301 (392)
                      .++|++||=+| +|. |..+..+++. ...+++.++.+++-++.+++    .+.. .+  +..+.. ......+.||+|+
T Consensus        22 ~~~~~~VLDlG-CG~-G~~~~~~~~~-~~~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~~~fD~V~   98 (252)
T d1ri5a_          22 TKRGDSVLDLG-CGK-GGDLLKYERA-GIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVIS   98 (252)
T ss_dssp             CCTTCEEEEET-CTT-TTTHHHHHHH-TCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEE
T ss_pred             CCCcCEEEEec-ccC-cHHHHHHHHc-CCCeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhcccccccceEEE
Confidence            57899999997 554 6667788876 34578999999998887753    3322 11  111111 1111244699997


Q ss_pred             ecCc--c-----------HHHHHHhcccCCeEEEE
Q 016265          302 DAIG--Q-----------CDRAVKAIKEGGTVVAL  323 (392)
Q Consensus       302 d~~G--~-----------~~~~~~~l~~~G~iv~~  323 (392)
                      ..-.  .           +..+.++|+|||+++..
T Consensus        99 ~~~~l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~  133 (252)
T d1ri5a_          99 SQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMT  133 (252)
T ss_dssp             EESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred             EcceeeecCCCHHHHHHHHHHHhceeCCCCEEEEE
Confidence            6432  1           24566789999998753

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=92.96  E-value=0.025  Score=44.91  Aligned_cols=88  Identities=14%  Similarity=0.107  Sum_probs=50.5

Q ss_pred             eEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcE--EEeCCCCccccCCCCccEEEecCc--cHHH-
Q 016265          235 SILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADL--AIDYTKDNFEDLPEKFDVVYDAIG--QCDR-  309 (392)
Q Consensus       235 ~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~--vi~~~~~~~~~~~~~~D~vid~~G--~~~~-  309 (392)
                      +|+|+| +|.+|.+.+..+.. .|.+|.++++++++.+.....+.+.  .......+..+..+.+|++|-++.  ..+. 
T Consensus         2 kI~IiG-aG~iG~~~a~~L~~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~iii~vka~~~~~~   79 (167)
T d1ks9a2           2 KITVLG-CGALGQLWLTALCK-QGHEVQGWLRVPQPYCSVNLVETDGSIFNESLTANDPDFLATSDLLLVTLKAWQVSDA   79 (167)
T ss_dssp             EEEEEC-CSHHHHHHHHHHHH-TTCEEEEECSSCCSEEEEEEECTTSCEEEEEEEESCHHHHHTCSEEEECSCGGGHHHH
T ss_pred             EEEEEC-cCHHHHHHHHHHHH-CCCceEEEEcCHHHhhhhccccCCccccccccccchhhhhcccceEEEeecccchHHH
Confidence            689998 79999876655555 4999999998776443322222111  000000001111247899999986  3333 


Q ss_pred             ---HHHhcccCCeEEEEc
Q 016265          310 ---AVKAIKEGGTVVALT  324 (392)
Q Consensus       310 ---~~~~l~~~G~iv~~g  324 (392)
                         +...+.++..++.+.
T Consensus        80 ~~~l~~~~~~~~~Iv~~q   97 (167)
T d1ks9a2          80 VKSLASTLPVTTPILLIH   97 (167)
T ss_dssp             HHHHHTTSCTTSCEEEEC
T ss_pred             HHhhccccCcccEEeecc
Confidence               334455566676663

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=92.93  E-value=0.11  Score=44.24  Aligned_cols=96  Identities=20%  Similarity=0.326  Sum_probs=59.7

Q ss_pred             HhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHH----HhcCCcEEEeCCCCc-cccCCCCccEE
Q 016265          226 ERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFL----KSLGADLAIDYTKDN-FEDLPEKFDVV  300 (392)
Q Consensus       226 ~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~----~~~G~~~vi~~~~~~-~~~~~~~~D~v  300 (392)
                      ....+....+||=+|  +|.|..+..+++...+.++++++. ++-.+.+    .+.|...-+.....+ +.....++|+|
T Consensus        74 ~~~d~~~~~~VLDvG--cG~G~~~~~la~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~rv~~~~~D~~~~~~~~~D~v  150 (253)
T d1tw3a2          74 AAYDWTNVRHVLDVG--GGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFEPLPRKADAI  150 (253)
T ss_dssp             HHSCCTTCSEEEEET--CTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTSCCSSCEEEE
T ss_pred             hhcCCccCCEEEEeC--CCCCHHHHHHHHhcceeEEEEccC-HHHHHHHHHHHHHhhcccchhhccccchhhcccchhhe
Confidence            445677778999887  567889999998743567777775 3334433    334432112211111 23345679999


Q ss_pred             EecCc-----------cHHHHHHhcccCCeEEEEc
Q 016265          301 YDAIG-----------QCDRAVKAIKEGGTVVALT  324 (392)
Q Consensus       301 id~~G-----------~~~~~~~~l~~~G~iv~~g  324 (392)
                      +-..-           -+..+.++|+|||+++...
T Consensus       151 ~~~~vlh~~~d~~~~~~L~~~~~~LkPGG~l~i~e  185 (253)
T d1tw3a2         151 ILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHE  185 (253)
T ss_dssp             EEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             eeccccccCCchhhHHHHHHHHHhcCCCcEEEEEe
Confidence            85421           1467888999999998764

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=92.87  E-value=0.06  Score=43.31  Aligned_cols=39  Identities=18%  Similarity=0.279  Sum_probs=32.8

Q ss_pred             eEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHH
Q 016265          235 SILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFL  274 (392)
Q Consensus       235 ~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~  274 (392)
                      +|.|+||+|++|.+.++.+.. .|.+|++..+++++.+.+
T Consensus         2 ki~vigGaG~iG~alA~~la~-~G~~V~l~~R~~e~~~~l   40 (212)
T d1jaya_           2 RVALLGGTGNLGKGLALRLAT-LGHEIVVGSRREEKAEAK   40 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHT-TTCEEEEEESSHHHHHHH
T ss_pred             EEEEEeCCcHHHHHHHHHHHH-CCCEEEEEECCHHHHHHH
Confidence            588998899999998877766 499999999998887655

>d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sepiapterin reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.86  E-value=0.043  Score=47.24  Aligned_cols=43  Identities=21%  Similarity=0.232  Sum_probs=34.4

Q ss_pred             CCCeEEEEcCCCcHHHHHHH-HHHH-hcCCeEEEEeCCcccHHHH
Q 016265          232 AGKSILVLNGSGGVGSLVIQ-LAKQ-VFGASRVAATSSTRNLEFL  274 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiq-lak~-~~G~~vv~~~~~~~~~~~~  274 (392)
                      .|+.++|+||++++|.+.++ ||+. ..|++|+++.+++++++.+
T Consensus         5 ~gKvalITGas~GIG~aiA~~lA~~~~~G~~Vv~~~r~~~~l~~~   49 (259)
T d1oaaa_           5 GCAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQL   49 (259)
T ss_dssp             BSEEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEESCHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHhcccCCCEEEEEECCHHHHHHH
Confidence            57888999999999998654 5652 1489999999999887765

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.75  E-value=0.21  Score=44.30  Aligned_cols=89  Identities=20%  Similarity=0.249  Sum_probs=52.6

Q ss_pred             cCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCC-eEEEEeCCcccHHHH----HhcCCc---EEEeCCCCccccCCCCccE
Q 016265          228 TGFSAGKSILVLNGSGGVGSLVIQLAKQVFGA-SRVAATSSTRNLEFL----KSLGAD---LAIDYTKDNFEDLPEKFDV  299 (392)
Q Consensus       228 ~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~-~vv~~~~~~~~~~~~----~~~G~~---~vi~~~~~~~~~~~~~~D~  299 (392)
                      ....+|++||-+| +| .|.++..+|++  |+ +|++++.++ ..+.+    ++.|..   .++..+..+.....+.+|+
T Consensus        34 ~~~~~~~~VLDlG-cG-tG~ls~~aa~~--Ga~~V~avd~s~-~~~~a~~~~~~~~~~~~i~~i~~~~~~l~~~~~~~D~  108 (328)
T d1g6q1_          34 KDLFKDKIVLDVG-CG-TGILSMFAAKH--GAKHVIGVDMSS-IIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDI  108 (328)
T ss_dssp             HHHHTTCEEEEET-CT-TSHHHHHHHHT--CCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEE
T ss_pred             cccCCcCEEEEeC-CC-CCHHHHHHHHh--CCCEEEEEeCCH-HHHHHHHHHHHhCccccceEEEeehhhccCcccceeE
Confidence            3456799999997 55 47888877764  76 566667664 33333    344432   2333333333223457999


Q ss_pred             EEec-Cc-------cH----HHHHHhcccCCeEE
Q 016265          300 VYDA-IG-------QC----DRAVKAIKEGGTVV  321 (392)
Q Consensus       300 vid~-~G-------~~----~~~~~~l~~~G~iv  321 (392)
                      |+.. .+       ..    ...-++|+|||+++
T Consensus       109 i~se~~~~~~~~e~~~~~~~~a~~r~LkpgG~ii  142 (328)
T d1g6q1_         109 IISEWMGYFLLYESMMDTVLYARDHYLVEGGLIF  142 (328)
T ss_dssp             EEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEE
T ss_pred             EEEEecceeeccchhHHHHHHHHHhccCCCeEEE
Confidence            8753 22       12    33446899999985

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=92.72  E-value=0.044  Score=45.40  Aligned_cols=104  Identities=24%  Similarity=0.338  Sum_probs=69.7

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCCccccCCCCccEEEecCc------
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFEDLPEKFDVVYDAIG------  305 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~~~~~~~D~vid~~G------  305 (392)
                      .|.+|.|+| .|.+|...+++++. +|++|++.++...+...   ..    +.+  .++.++....|++.-++.      
T Consensus        44 ~~ktvgIiG-~G~IG~~va~~l~~-fg~~v~~~d~~~~~~~~---~~----~~~--~~l~~l~~~~D~v~~~~plt~~T~  112 (199)
T d1dxya1          44 GQQTVGVMG-TGHIGQVAIKLFKG-FGAKVIAYDPYPMKGDH---PD----FDY--VSLEDLFKQSDVIDLHVPGIEQNT  112 (199)
T ss_dssp             GGSEEEEEC-CSHHHHHHHHHHHH-TTCEEEEECSSCCSSCC---TT----CEE--CCHHHHHHHCSEEEECCCCCGGGT
T ss_pred             cceeeeeee-cccccccccccccc-cceeeeccCCccchhhh---cc----hhH--HHHHHHHHhcccceeeeccccccc
Confidence            468999998 99999999999998 69999999875432110   00    011  123333345688887654      


Q ss_pred             c-H-HHHHHhcccCCeEEEEcCCCCCCceEEEEeecHHHHHHHHHHHHCCCcccc
Q 016265          306 Q-C-DRAVKAIKEGGTVVALTGAVTPPGFRFVVTSNGEVLKKLNPYLESGKVKPI  358 (392)
Q Consensus       306 ~-~-~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~l~~~  358 (392)
                      . + ...++.|+++..+|..+....         .   +-+.+++.+++|++...
T Consensus       113 ~li~~~~l~~mk~~a~lIN~aRG~v---------v---de~aL~~aL~~g~i~ga  155 (199)
T d1dxya1         113 HIINEAAFNLMKPGAIVINTARPNL---------I---DTQAMLSNLKSGKLAGV  155 (199)
T ss_dssp             TSBCHHHHHHSCTTEEEEECSCTTS---------B---CHHHHHHHHHTTSEEEE
T ss_pred             ccccHHHhhccCCceEEEecccHhh---------h---hhHHHHHHHhcCCcceE
Confidence            1 1 688899999998887753221         0   13567788999998743

>d2g82a1 c.2.1.3 (A:1-148,A:311-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Thermus aquaticus [TaxId: 271]

Probab=92.70  E-value=0.49  Score=37.55  Aligned_cols=92  Identities=16%  Similarity=0.288  Sum_probs=57.8

Q ss_pred             eEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeC--CcccHHHHHhc----C---CcE-------EEe------CCCCcccc
Q 016265          235 SILVLNGSGGVGSLVIQLAKQVFGASRVAATS--STRNLEFLKSL----G---ADL-------AID------YTKDNFED  292 (392)
Q Consensus       235 ~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~--~~~~~~~~~~~----G---~~~-------vi~------~~~~~~~~  292 (392)
                      +|.|.| -|-+|+++.+++.. .+.+++++-.  +.+.+.++-++    |   .+.       .++      +...+..+
T Consensus         2 kigING-fGRIGR~~~R~l~~-~~i~iv~INd~~~~~~~ayLl~yDS~hG~~~~~v~~~~~~l~i~g~~I~~~~~~~p~~   79 (168)
T d2g82a1           2 KVGING-FGRIGRQVFRILHS-RGVEVALINDLTDNKTLAHLLKYDSIYHRFPGEVAYDDQYLYVDGKAIRATAVKDPKE   79 (168)
T ss_dssp             EEEEEC-CSHHHHHHHHHHHH-HTCCEEEEECSSCHHHHHHHHHCCTTTCSCSSCEEECSSEEEETTEEEEEECCSSGGG
T ss_pred             EEEEEC-CcHHHHHHHHHHhc-CCCEEEEECCCcchhhhhheeecccccCccccccccccceeEecceeEEEEecCChHH
Confidence            588998 99999999998877 4888877754  33344444333    2   110       011      11111222


Q ss_pred             C---CCCccEEEecCcc---HHHHHHhcccCCeEEEEcCCCC
Q 016265          293 L---PEKFDVVYDAIGQ---CDRAVKAIKEGGTVVALTGAVT  328 (392)
Q Consensus       293 ~---~~~~D~vid~~G~---~~~~~~~l~~~G~iv~~g~~~~  328 (392)
                      +   ..++|+|+||+|.   .+.+...+..|-+=|.++.+..
T Consensus        80 i~W~~~gvdiViEcTG~f~~~~~~~~hl~~gakkViiSAP~k  121 (168)
T d2g82a1          80 IPWAEAGVGVVIESTGVFTDADKAKAHLEGGAKKVIITAPAK  121 (168)
T ss_dssp             CCTGGGTEEEEEECSSSCCBHHHHTHHHHTTCSEEEESSCCB
T ss_pred             CcccccCCceeEeccccccchHHhhhhhccccceeeeccccc
Confidence            2   1279999999993   4788888888877777766553

>d1jtva_ c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Human estrogenic 17beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.65  E-value=0.22  Score=43.30  Aligned_cols=30  Identities=13%  Similarity=0.113  Sum_probs=22.9

Q ss_pred             eEEEEcCCCcHHHHHHHHHHHhcCCeEEEEe
Q 016265          235 SILVLNGSGGVGSLVIQLAKQVFGASRVAAT  265 (392)
Q Consensus       235 ~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~  265 (392)
                      .|||+||++|+|.+.+..... .|++++.+.
T Consensus         4 VvlITGassGIG~a~A~~la~-~Ga~v~~v~   33 (285)
T d1jtva_           4 VVLITGCSSGIGLHLAVRLAS-DPSQSFKVY   33 (285)
T ss_dssp             EEEESCCSSHHHHHHHHHHHT-CTTCCEEEE
T ss_pred             EEEEccCCCHHHHHHHHHHHH-CCCCeEEEE
Confidence            468899999999997766555 488866543

>d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Acetaldehyde dehydrogenase (acylating)
species: Pseudomonas sp. [TaxId: 306]

Probab=92.65  E-value=0.1  Score=41.30  Aligned_cols=90  Identities=19%  Similarity=0.287  Sum_probs=53.9

Q ss_pred             CeEEEEcCCCcHHH-HHHHHHHHhcCCeEEEEeC-Ccc--cHHHHHhcCCcEEEeCCCCccccC--CCCccEEEecCc--
Q 016265          234 KSILVLNGSGGVGS-LVIQLAKQVFGASRVAATS-STR--NLEFLKSLGADLAIDYTKDNFEDL--PEKFDVVYDAIG--  305 (392)
Q Consensus       234 ~~VlI~Ga~G~vG~-~aiqlak~~~G~~vv~~~~-~~~--~~~~~~~~G~~~vi~~~~~~~~~~--~~~~D~vid~~G--  305 (392)
                      =+|.|+| +|.+|. ..+++.+..-..+++.+.+ +.+  .+.+++++|....... -+.+.+.  ..++|+||+++.  
T Consensus         5 irvaIIG-aG~ig~~~~~~~l~~~~~~el~avas~~~~~~~~~~a~~~~i~~~~~~-~d~l~~~~~~~~iDiVf~ATpag   82 (157)
T d1nvmb1           5 LKVAIIG-SGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQRMGVTTTYAG-VEGLIKLPEFADIDFVFDATSAS   82 (157)
T ss_dssp             EEEEEEC-CSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHHHHTTCCEESSH-HHHHHHSGGGGGEEEEEECSCHH
T ss_pred             cEEEEEc-CcHHHHHHHHHHHhhCCcceEEEEEecchhccchhhhhhcCCcccccc-eeeeeecccccccCEEEEcCCch
Confidence            3689999 999997 5667777633445666543 333  3567788886543221 1112221  236899999976  


Q ss_pred             -cHH--HHHHhcccCCeEEEEcC
Q 016265          306 -QCD--RAVKAIKEGGTVVALTG  325 (392)
Q Consensus       306 -~~~--~~~~~l~~~G~iv~~g~  325 (392)
                       +..  .+.+.++.|-.++....
T Consensus        83 ~h~~~~~~~~aa~~G~~VID~s~  105 (157)
T d1nvmb1          83 AHVQNEALLRQAKPGIRLIDLTP  105 (157)
T ss_dssp             HHHHHHHHHHHHCTTCEEEECST
T ss_pred             hHHHhHHHHHHHHcCCEEEEccc
Confidence             233  34555666666666654

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=92.57  E-value=0.19  Score=37.27  Aligned_cols=34  Identities=15%  Similarity=0.146  Sum_probs=29.2

Q ss_pred             CCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCc
Q 016265          233 GKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSST  268 (392)
Q Consensus       233 g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~  268 (392)
                      .++|+|+| +|.+|+=+++.++. .|.+|.++.+.+
T Consensus        21 p~~vvIiG-gG~ig~E~A~~l~~-~G~~Vtlve~~~   54 (116)
T d1gesa2          21 PERVAVVG-AGYIGVELGGVING-LGAKTHLFEMFD   54 (116)
T ss_dssp             CSEEEEEC-CSHHHHHHHHHHHH-TTCEEEEECSSS
T ss_pred             CCEEEEEC-CChhhHHHHHHhhc-cccEEEEEeecc
Confidence            36899998 99999999999988 599998888754

>d1jbqa_ c.79.1.1 (A:) Cystathionine beta-synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Cystathionine beta-synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.55  E-value=0.88  Score=40.55  Aligned_cols=99  Identities=19%  Similarity=0.300  Sum_probs=68.4

Q ss_pred             HHHhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeC---CcccHHHHHhcCCcEEEeCCCCc------c----
Q 016265          224 GLERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATS---STRNLEFLKSLGADLAIDYTKDN------F----  290 (392)
Q Consensus       224 al~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~---~~~~~~~~~~~G~~~vi~~~~~~------~----  290 (392)
                      +.+...+++++.|+.. .+|-.|.+.+.+|+. +|.+.+++..   ++.|.+.++.+|++.+.......      .    
T Consensus        88 a~~~g~~~~~~~vv~a-SsGN~g~a~A~~a~~-~Gi~~~iv~p~~~~~~k~~~i~~~GA~vv~v~~~~~~~~~~~~~~~~  165 (355)
T d1jbqa_          88 AERDGTLKPGDTIIEP-TSGNTGIGLALAAAV-RGYRCIIVMPEKMSSEKVDVLRALGAEIVRTPTNARFDSPESHVGVA  165 (355)
T ss_dssp             HHHHTCSCTTCEEEEE-CSSHHHHHHHHHHHH-HTCEEEEEECSCCCHHHHHHHHHTTCEEEECCC-------CCHHHHH
T ss_pred             HHHcCCcccCceEEEe-cccchhhHHHHHHHh-ccCCeEEEeeccchHHHHHHHHhcCCeEEEecccccchhhhhhhhHH
Confidence            4455667777766665 499999999999998 4998887764   66788999999998655221100      0    


Q ss_pred             ----------------------------------ccCCCCccEEEecCcc------HHHHHHhcccCCeEEEEc
Q 016265          291 ----------------------------------EDLPEKFDVVYDAIGQ------CDRAVKAIKEGGTVVALT  324 (392)
Q Consensus       291 ----------------------------------~~~~~~~D~vid~~G~------~~~~~~~l~~~G~iv~~g  324 (392)
                                                        +++...+|.++-++|+      +-..++...+.-+++.+.
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~ag~~t~~~EI~~ql~~~~d~vv~~vG~GG~~~Gi~~~lk~~~~~~kii~ve  239 (355)
T d1jbqa_         166 WRLKNEIPNSHILDQYRNASNPLAHYDTTADEILQQCDGKLDMLVASVGTGGTITGIARKLKEKCPGCRIIGVD  239 (355)
T ss_dssp             HHHHHHSTTEECCCTTTCTHHHHHHHHTHHHHHHHHHTTCCCEEEEECSSSHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred             HHHHHhccccccccccCcccchhhhcccchhhhhhhcCCCCCeeEecccCCchHHHHHHHHhhcCCcceEEeec
Confidence                                              0002358999999872      356666777888888763

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=92.52  E-value=0.1  Score=40.89  Aligned_cols=83  Identities=19%  Similarity=0.259  Sum_probs=58.6

Q ss_pred             eEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHH-HhcCCcEEEeCCCCccccCCCCccEEEecCc--cHHHHH
Q 016265          235 SILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFL-KSLGADLAIDYTKDNFEDLPEKFDVVYDAIG--QCDRAV  311 (392)
Q Consensus       235 ~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~-~~~G~~~vi~~~~~~~~~~~~~~D~vid~~G--~~~~~~  311 (392)
                      +|.++| +|-+|.+.+.-... .|.++++..++.++.+.+ +++|...+-     +..+..+..|+||-|+-  .+...+
T Consensus         2 kIg~IG-~G~mG~al~~~l~~-~~~~i~v~~r~~~~~~~l~~~~g~~~~~-----~~~~~~~~~dvIilavkp~~~~~vl   74 (152)
T d2ahra2           2 KIGIIG-VGKMASAIIKGLKQ-TPHELIISGSSLERSKEIAEQLALPYAM-----SHQDLIDQVDLVILGIKPQLFETVL   74 (152)
T ss_dssp             EEEEEC-CSHHHHHHHHHHTT-SSCEEEEECSSHHHHHHHHHHHTCCBCS-----SHHHHHHTCSEEEECSCGGGHHHHH
T ss_pred             EEEEEe-ccHHHHHHHHHHHh-CCCeEEEEcChHHhHHhhccccceeeec-----hhhhhhhccceeeeecchHhHHHHh
Confidence            578898 99999987664444 478888888888887665 567764321     23333457899999985  467778


Q ss_pred             HhcccCCeEEEEc
Q 016265          312 KAIKEGGTVVALT  324 (392)
Q Consensus       312 ~~l~~~G~iv~~g  324 (392)
                      +.++++-.++.+.
T Consensus        75 ~~l~~~~~iis~~   87 (152)
T d2ahra2          75 KPLHFKQPIISMA   87 (152)
T ss_dssp             TTSCCCSCEEECC
T ss_pred             hhcccceeEeccc
Confidence            8888877776553

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=92.44  E-value=0.22  Score=42.51  Aligned_cols=96  Identities=14%  Similarity=0.105  Sum_probs=64.4

Q ss_pred             HHhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhc-CCcEEEeCCCCcccc---CCCCccEE
Q 016265          225 LERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSL-GADLAIDYTKDNFED---LPEKFDVV  300 (392)
Q Consensus       225 l~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~-G~~~vi~~~~~~~~~---~~~~~D~v  300 (392)
                      |.......+.+||=+|  +|.|..+..+++. ++.+|..++.+++-++.+++. .....+++...++.+   ..+.||+|
T Consensus        86 l~~l~~~~~~~vLD~G--cG~G~~t~~ll~~-~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD~I  162 (254)
T d1xtpa_          86 IASLPGHGTSRALDCG--AGIGRITKNLLTK-LYATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTYDLI  162 (254)
T ss_dssp             HHTSTTCCCSEEEEET--CTTTHHHHHTHHH-HCSEEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSCEEEE
T ss_pred             HhhCCCCCCCeEEEec--ccCChhhHHHHhh-cCceEEEEcCCHHHHHhhhccccccccceeEEccccccccCCCccceE
Confidence            3455566778888886  4569999988876 366788999999888888754 222223322222222   24579999


Q ss_pred             EecC--cc---------HHHHHHhcccCCeEEEE
Q 016265          301 YDAI--GQ---------CDRAVKAIKEGGTVVAL  323 (392)
Q Consensus       301 id~~--G~---------~~~~~~~l~~~G~iv~~  323 (392)
                      +..-  ..         +..+.+.|+++|.++..
T Consensus       163 ~~~~vl~hl~d~d~~~~l~~~~~~LkpgG~iii~  196 (254)
T d1xtpa_         163 VIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFK  196 (254)
T ss_dssp             EEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             EeeccccccchhhhHHHHHHHHHhcCCCcEEEEE
Confidence            8652  21         46777889999998865

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=92.44  E-value=0.097  Score=46.67  Aligned_cols=95  Identities=23%  Similarity=0.239  Sum_probs=60.7

Q ss_pred             cCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCC-eEEEEeCCcccHHHHHh----cCCcE---EEeCCCCcc----ccCCC
Q 016265          228 TGFSAGKSILVLNGSGGVGSLVIQLAKQVFGA-SRVAATSSTRNLEFLKS----LGADL---AIDYTKDNF----EDLPE  295 (392)
Q Consensus       228 ~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~-~vv~~~~~~~~~~~~~~----~G~~~---vi~~~~~~~----~~~~~  295 (392)
                      ..+++|++||=.+  ++.|..++.+|+.  |+ +|+.++.+++.++.+++    .|.+.   ++..+-.++    ....+
T Consensus       141 ~~~~~g~~VLDl~--~g~G~~si~~a~~--ga~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~~~~~~~~~~~  216 (324)
T d2as0a2         141 KWVQPGDRVLDVF--TYTGGFAIHAAIA--GADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGE  216 (324)
T ss_dssp             GGCCTTCEEEETT--CTTTHHHHHHHHT--TCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTC
T ss_pred             hhcCCCCeeeccc--Ccccchhhhhhhc--CCcEEEeecCCHHHHHHHHHHHHHcCCCccceeeechhhhhhHHHHhccC
Confidence            3468899998875  3456666777764  65 68888999988887743    45432   222221111    12356


Q ss_pred             CccEEEe-c--Cc-c--------------HHHHHHhcccCCeEEEEcCC
Q 016265          296 KFDVVYD-A--IG-Q--------------CDRAVKAIKEGGTVVALTGA  326 (392)
Q Consensus       296 ~~D~vid-~--~G-~--------------~~~~~~~l~~~G~iv~~g~~  326 (392)
                      .||+|+- .  .+ .              +..++++|+|||.++.+...
T Consensus       217 ~fD~Vi~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~s  265 (324)
T d2as0a2         217 KFDIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCS  265 (324)
T ss_dssp             CEEEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECC
T ss_pred             CCCchhcCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeCC
Confidence            7999884 2  11 0              35678899999999987653

>d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha-hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=92.37  E-value=0.071  Score=45.40  Aligned_cols=35  Identities=14%  Similarity=0.213  Sum_probs=28.7

Q ss_pred             CeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcc
Q 016265          234 KSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTR  269 (392)
Q Consensus       234 ~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~  269 (392)
                      +.|||+||++++|++.++.... .|++|++++++++
T Consensus         2 kVvlITGas~GIG~aiA~~la~-~Ga~V~~~~~~~~   36 (257)
T d1fjha_           2 SIIVISGCATGIGAATRKVLEA-AGHQIVGIDIRDA   36 (257)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHH-TTCEEEEEESSSS
T ss_pred             CEEEEeCCCCHHHHHHHHHHHH-CCCEEEEEECChH
Confidence            3579999999999998777666 4999999987543

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.27  E-value=0.16  Score=42.21  Aligned_cols=93  Identities=14%  Similarity=0.137  Sum_probs=61.1

Q ss_pred             CCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcC----CcE--EEeCCCCccccCCCCccEEEe
Q 016265          229 GFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLG----ADL--AIDYTKDNFEDLPEKFDVVYD  302 (392)
Q Consensus       229 ~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G----~~~--vi~~~~~~~~~~~~~~D~vid  302 (392)
                      ...++.+||=+|  +|.|..+..+++. .+.+++.++.+++-++.+++.-    ...  .+..+-.++....+.+|+|+.
T Consensus        57 ~~~~~~~vLDiG--cG~G~~~~~l~~~-~~~~v~~vD~s~~~l~~ak~~~~~~~~~~~~f~~~d~~~~~~~~~~fD~I~~  133 (222)
T d2ex4a1          57 NKTGTSCALDCG--AGIGRITKRLLLP-LFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWI  133 (222)
T ss_dssp             -CCCCSEEEEET--CTTTHHHHHTTTT-TCSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEE
T ss_pred             CCCCCCEEEEec--cCCCHhhHHHHHh-cCCEEEEeecCHHHhhcccccccccccccccccccccccccccccccccccc
Confidence            456778899987  4568888888765 4668889999998888886532    221  222222222223457999986


Q ss_pred             cCc-----------cHHHHHHhcccCCeEEEEc
Q 016265          303 AIG-----------QCDRAVKAIKEGGTVVALT  324 (392)
Q Consensus       303 ~~G-----------~~~~~~~~l~~~G~iv~~g  324 (392)
                      .-.           .+..+.+.|+++|.++...
T Consensus       134 ~~~l~h~~~~~~~~~l~~i~~~Lk~~G~~~i~~  166 (222)
T d2ex4a1         134 QWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKD  166 (222)
T ss_dssp             ESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ccccccchhhhhhhHHHHHHHhcCCcceEEEEE
Confidence            422           1356778899999998763

>d1q0qa2 c.2.1.3 (A:1-125,A:275-300) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase
species: Escherichia coli [TaxId: 562]

Probab=92.17  E-value=0.32  Score=37.93  Aligned_cols=86  Identities=19%  Similarity=0.242  Sum_probs=57.3

Q ss_pred             eEEEEcCCCcHHHHHHHHHHHhc-CCeEEEEeC--Cccc-HHHHHhcCCcEEEeCCCCcccc------------------
Q 016265          235 SILVLNGSGGVGSLVIQLAKQVF-GASRVAATS--STRN-LEFLKSLGADLAIDYTKDNFED------------------  292 (392)
Q Consensus       235 ~VlI~Ga~G~vG~~aiqlak~~~-G~~vv~~~~--~~~~-~~~~~~~G~~~vi~~~~~~~~~------------------  292 (392)
                      +|.|+|++|.+|.-+..+.+... ..+++..+.  +-++ .+.+++|....++-.++....+                  
T Consensus         3 ~I~IlGsTGSIG~~tL~Vi~~~~d~f~v~~Lsa~~N~~~L~~q~~~f~pk~v~i~d~~~~~~l~~~l~~~~~~~~~~~g~   82 (151)
T d1q0qa2           3 QLTILGSTGSIGCSTLDVVRHNPEHFRVVALVAGKNVTRMVEQCLEFSPRYAVMDDEASAKLLKTMLQQQGSRTEVLSGQ   82 (151)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHCTTTEEEEEEEESSCHHHHHHHHHHHCCSEEEESSHHHHHHHHHHHHHTTCCCEEEESH
T ss_pred             eEEEEcCCcHHHHHHHHHHHhCCCCcEEEEEEecCcHHHHHHHHHHHhhcccccccHHHHHHHHHHhhhhccccccccCh
Confidence            68999999999999999998731 246666554  2223 2445678877766544322110                  


Q ss_pred             -------CCCCccEEEec-Cc--cHHHHHHhcccCCeE
Q 016265          293 -------LPEKFDVVYDA-IG--QCDRAVKAIKEGGTV  320 (392)
Q Consensus       293 -------~~~~~D~vid~-~G--~~~~~~~~l~~~G~i  320 (392)
                             ....+|+|+.+ +|  ++.-.+.+++.|=++
T Consensus        83 ~~l~~~~~~~~~D~vi~AI~G~aGL~~t~~aik~gk~i  120 (151)
T d1q0qa2          83 QAACDMAALEDVDQVMAAIVGAAGLLPTLAAIRAGKTI  120 (151)
T ss_dssp             HHHHHHHTCTTCCEEEECCSSGGGHHHHHHHHHTTCEE
T ss_pred             HHHHHHhcCCCCCEEEEecCcccHHHHHHHHHhcCCeE
Confidence                   02368999999 46  578888888876554

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=91.98  E-value=0.12  Score=44.30  Aligned_cols=97  Identities=23%  Similarity=0.265  Sum_probs=60.7

Q ss_pred             HhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHH----HhcCC-cEEEeCCCCccccCCCCccEE
Q 016265          226 ERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFL----KSLGA-DLAIDYTKDNFEDLPEKFDVV  300 (392)
Q Consensus       226 ~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~----~~~G~-~~vi~~~~~~~~~~~~~~D~v  300 (392)
                      +...+....+||=+|  |+.|..+..+++..-+.++++++. ++-.+.+    ++.|. +.+.-...+.+.....++|++
T Consensus        75 ~~~d~~~~~~vlDvG--~G~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~~~~~~~~ri~~~~~d~~~~~p~~~D~v  151 (256)
T d1qzza2          75 DAYDWSAVRHVLDVG--GGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFKPLPVTADVV  151 (256)
T ss_dssp             HTSCCTTCCEEEEET--CTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCCEEEE
T ss_pred             hcCCCccCCEEEEEC--CCCCHHHHHHHHhhcCcEEEEecC-hHHHHHHHHHHhhcCCcceeeeeeeeccccccccchhh
Confidence            445667778898886  567899999998733567787775 3333333    34443 222111112233455679998


Q ss_pred             EecCc-----------cHHHHHHhcccCCeEEEEcC
Q 016265          301 YDAIG-----------QCDRAVKAIKEGGTVVALTG  325 (392)
Q Consensus       301 id~~G-----------~~~~~~~~l~~~G~iv~~g~  325 (392)
                      +-.--           -++.+.++|+|||+++.+..
T Consensus       152 ~~~~vLh~~~d~~~~~lL~~i~~~LkpgG~llI~d~  187 (256)
T d1qzza2         152 LLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDR  187 (256)
T ss_dssp             EEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             hccccccccCcHHHHHHHHHHHhhcCCcceeEEEEe
Confidence            84421           14678889999999987753

>d1u8fo1 c.2.1.3 (O:3-151,O:316-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Human(Homo sapiens), liver isoform [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Human(Homo sapiens), liver isoform [TaxId: 9606]

Probab=91.95  E-value=1.1  Score=35.41  Aligned_cols=92  Identities=16%  Similarity=0.217  Sum_probs=56.9

Q ss_pred             eEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeC---CcccHHHHHhc----C---CcE-------EEeC------CCCccc
Q 016265          235 SILVLNGSGGVGSLVIQLAKQVFGASRVAATS---STRNLEFLKSL----G---ADL-------AIDY------TKDNFE  291 (392)
Q Consensus       235 ~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~---~~~~~~~~~~~----G---~~~-------vi~~------~~~~~~  291 (392)
                      +|.|.| -|-+|+++...+......+++++-.   +.+.+.++-++    |   .+.       +++.      ...+..
T Consensus         3 kIgING-FGRIGR~v~R~~~~~~~~~ivaINd~~~~~~~~ayLlkyDS~hG~~~~~v~~~~~~l~i~~~~I~~~~~~~p~   81 (169)
T d1u8fo1           3 KVGVNG-FGRIGRLVTRAAFNSGKVDIVAINDPFIDLNYMVYMFQYDSTHGKFHGTVKAENGKLVINGNPITIFQERDPS   81 (169)
T ss_dssp             EEEEEC-CSHHHHHHHHHHHHHCSSEEEEEECSSSCHHHHHHHHHCCTTTCSCSSCEEEETTEEEETTEEEEEECCSSGG
T ss_pred             EEEEEC-CcHHHHHHHHHHHHCCCcEEEEecCCCccHHHHHHHHhhccccCCcCCeEEEECCEEEECCEEEEEEECCChh
Confidence            688998 9999999998776643466666633   23445555442    2   111       1111      111112


Q ss_pred             cC---CCCccEEEecCcc---HHHHHHhcccCCeEEEEcCCC
Q 016265          292 DL---PEKFDVVYDAIGQ---CDRAVKAIKEGGTVVALTGAV  327 (392)
Q Consensus       292 ~~---~~~~D~vid~~G~---~~~~~~~l~~~G~iv~~g~~~  327 (392)
                      ++   ..++|+|+||+|.   .+.+...+..|-+-|.++.+.
T Consensus        82 ~i~W~~~~vDiViEcTG~f~~~~~~~~hl~~gakkViiSaP~  123 (169)
T d1u8fo1          82 KIKWGDAGAEYVVESTGVFTTMEKAGAHLQGGAKRVIISAPS  123 (169)
T ss_dssp             GCCTTTTTCCEEEECSSSCCSHHHHGGGGGGTCSEEEESSCC
T ss_pred             hCCccccCCCEEEEecceeccHHHHHHHHhcCCceEeecccc
Confidence            22   2379999999993   577777888888878887654

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=91.95  E-value=0.53  Score=36.87  Aligned_cols=65  Identities=20%  Similarity=0.135  Sum_probs=45.5

Q ss_pred             CeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCCccccCCCCccEEEecCc
Q 016265          234 KSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFEDLPEKFDVVYDAIG  305 (392)
Q Consensus       234 ~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~~~~~~~D~vid~~G  305 (392)
                      ++|.++| .|-+|...+.-+.. .|.+|.+.+++.++.+.+.+.|+...-     +..+.....|+++-|+.
T Consensus         2 ~kIg~IG-lG~MG~~iA~~L~~-~g~~v~~~d~~~~~~~~~~~~~~~~~~-----~~~e~~~~~diii~~v~   66 (162)
T d3cuma2           2 KQIAFIG-LGHMGAPMATNLLK-AGYLLNVFDLVQSAVDGLVAAGASAAR-----SARDAVQGADVVISMLP   66 (162)
T ss_dssp             CEEEEEC-CSTTHHHHHHHHHH-TTCEEEEECSSHHHHHHHHHTTCEECS-----SHHHHHTSCSEEEECCS
T ss_pred             CEEEEEE-EHHHHHHHHHHHHH-CCCeEEEEECchhhhhhhhhhhccccc-----hhhhhccccCeeeeccc
Confidence            3688998 99999866554444 499999999999999888888754321     12233345677777765

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=91.93  E-value=0.17  Score=44.93  Aligned_cols=92  Identities=26%  Similarity=0.265  Sum_probs=59.6

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHh----cCCcE--EEeCCCCcc----ccCCCCccEE
Q 016265          231 SAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKS----LGADL--AIDYTKDNF----EDLPEKFDVV  300 (392)
Q Consensus       231 ~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~----~G~~~--vi~~~~~~~----~~~~~~~D~v  300 (392)
                      .+|++||=.+ +|. |..++++|+  .+++|+.++.++..++.+++    .|.+.  ++..+..++    ....+.||+|
T Consensus       144 ~~g~rVLDl~-~gt-G~~s~~~a~--g~~~V~~vD~s~~al~~a~~n~~~ngl~~~~~i~~d~~~~~~~~~~~~~~fD~V  219 (318)
T d1wxxa2         144 FRGERALDVF-SYA-GGFALHLAL--GFREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLV  219 (318)
T ss_dssp             CCEEEEEEET-CTT-THHHHHHHH--HEEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred             hCCCeeeccC-CCC-cHHHHHHHh--cCCcEEeecchHHHHHHHHHHHHHcCCCCcceeeccHHHHhhhhHhhhcCCCEE
Confidence            4689998876 443 555677775  37789999999998887753    56542  222222222    2235679988


Q ss_pred             Ee-c--Cc----c-----------HHHHHHhcccCCeEEEEcCC
Q 016265          301 YD-A--IG----Q-----------CDRAVKAIKEGGTVVALTGA  326 (392)
Q Consensus       301 id-~--~G----~-----------~~~~~~~l~~~G~iv~~g~~  326 (392)
                      +- .  .+    .           +..++++|+|||.++.....
T Consensus       220 i~DpP~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~scs  263 (318)
T d1wxxa2         220 VLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCS  263 (318)
T ss_dssp             EECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             EEcCCccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence            84 2  11    0           25678899999999887653

>d1dssg1 c.2.1.3 (G:1-148,G:313-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {South China Sea lobster (Palinurus versicolor) [TaxId: 150436]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: South China Sea lobster (Palinurus versicolor) [TaxId: 150436]

Probab=91.83  E-value=0.77  Score=36.39  Aligned_cols=91  Identities=21%  Similarity=0.377  Sum_probs=58.7

Q ss_pred             eEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeC---CcccHHHHHhc----C---CcE-------EEeC------CCCccc
Q 016265          235 SILVLNGSGGVGSLVIQLAKQVFGASRVAATS---STRNLEFLKSL----G---ADL-------AIDY------TKDNFE  291 (392)
Q Consensus       235 ~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~---~~~~~~~~~~~----G---~~~-------vi~~------~~~~~~  291 (392)
                      +|.|.| -|-+|+++...+... +.+++.+-.   +.+.+.++-++    |   .+.       +++.      ...+..
T Consensus         2 kIgING-fGRIGR~~~R~~~~~-~~~ivaINd~~~~~~~~~yLlkyDS~hG~~~~~i~~~~~~l~ing~~I~~~~~~~p~   79 (169)
T d1dssg1           2 KIGING-FGRIGRLVLRAALEM-GAQVVAVNDPFIALEYMVYMFKYDSTHGMFKGEVKAEDGALVVDGKKITVFNEMKPE   79 (169)
T ss_dssp             CEEEEC-CSHHHHHHHHHHHHH-TCCEEEEECTTSCHHHHHHHHHCCTTTCCCSSCEEEETTEEEETTEEEEEECCSSGG
T ss_pred             eEEEEC-CcHHHHHHHHHHHhC-CCcEEEECCCCcCHHHHHHHHhcccccCCcCCeEEEeCCEEEECCEEEEEEecCChH
Confidence            588998 999999999988774 887777653   23445555443    2   111       1111      011111


Q ss_pred             cCC---CCccEEEecCc---cHHHHHHhcccCCeEEEEcCCC
Q 016265          292 DLP---EKFDVVYDAIG---QCDRAVKAIKEGGTVVALTGAV  327 (392)
Q Consensus       292 ~~~---~~~D~vid~~G---~~~~~~~~l~~~G~iv~~g~~~  327 (392)
                      ++.   .++|+||||+|   ..+.+...+..|-+-|.++.+.
T Consensus        80 ~i~W~~~gvD~ViEcTG~f~~~~~~~~hl~~gakkViisaP~  121 (169)
T d1dssg1          80 NIPWSKAGAEYIVESTGVFTTIEKASAHFKGGAKKVIISAPS  121 (169)
T ss_dssp             GCCHHHHTCCEEEECSSSCCSHHHHGGGGTTTCSEEEESSCC
T ss_pred             HCCccccCCCEEEecCceEcCHHHHHHHHhcCCceEeecCCc
Confidence            221   27999999999   3578888898888888887654

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=91.75  E-value=0.13  Score=42.84  Aligned_cols=88  Identities=18%  Similarity=0.211  Sum_probs=57.9

Q ss_pred             CCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCc--EEEeCCCCccccCCCCccEEEecCcc-
Q 016265          230 FSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGAD--LAIDYTKDNFEDLPEKFDVVYDAIGQ-  306 (392)
Q Consensus       230 ~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~--~vi~~~~~~~~~~~~~~D~vid~~G~-  306 (392)
                      .-.+++||=+| + |.|..+..+++.  |.+++.++.+++..+.+++...+  ..+...-+++ ...+.||+|+-. +. 
T Consensus        18 ~~~~~~VLDiG-c-G~G~~~~~l~~~--g~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~~~~-~~~~~fD~I~~~-~vl   91 (225)
T d2p7ia1          18 FFRPGNLLELG-S-FKGDFTSRLQEH--FNDITCVEASEEAISHAQGRLKDGITYIHSRFEDA-QLPRRYDNIVLT-HVL   91 (225)
T ss_dssp             GCCSSCEEEES-C-TTSHHHHHHTTT--CSCEEEEESCHHHHHHHHHHSCSCEEEEESCGGGC-CCSSCEEEEEEE-SCG
T ss_pred             hCCCCcEEEEe-C-CCcHHHHHHHHc--CCeEEEEeCcHHHhhhhhccccccccccccccccc-cccccccccccc-cee
Confidence            34577899887 4 448888888763  88999999999989888764332  2222221222 234679999843 31 


Q ss_pred             ---------HHHHH-HhcccCCeEEEE
Q 016265          307 ---------CDRAV-KAIKEGGTVVAL  323 (392)
Q Consensus       307 ---------~~~~~-~~l~~~G~iv~~  323 (392)
                               +..+. ++|+|||.++..
T Consensus        92 eh~~d~~~~l~~i~~~~Lk~gG~l~i~  118 (225)
T d2p7ia1          92 EHIDDPVALLKRINDDWLAEGGRLFLV  118 (225)
T ss_dssp             GGCSSHHHHHHHHHHTTEEEEEEEEEE
T ss_pred             EecCCHHHHHHHHHHHhcCCCceEEEE
Confidence                     34555 578999998764

>d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Leishmania major [TaxId: 5664]

Probab=91.45  E-value=0.3  Score=41.91  Aligned_cols=37  Identities=11%  Similarity=0.047  Sum_probs=27.8

Q ss_pred             eEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCC-cccHH
Q 016265          235 SILVLNGSGGVGSLVIQLAKQVFGASRVAATSS-TRNLE  272 (392)
Q Consensus       235 ~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~-~~~~~  272 (392)
                      .+||+||++++|.+.++.+.. .|++|++..+. +++.+
T Consensus         4 VAlITGas~GIG~aiA~~la~-~Ga~V~i~~~~~~~~~~   41 (284)
T d1e7wa_           4 VALVTGAAKRLGRSIAEGLHA-EGYAVCLHYHRSAAEAN   41 (284)
T ss_dssp             EEEETTCSSHHHHHHHHHHHH-TTCEEEEEESSCHHHHH
T ss_pred             EEEEeCCCCHHHHHHHHHHHH-cCCEEEEEeCCCHHHHH
Confidence            358899999999997776655 49999988764 44443

>d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-tyvelose-2-epimerase
species: Salmonella typhi [TaxId: 90370]

Probab=91.43  E-value=0.15  Score=44.71  Aligned_cols=70  Identities=23%  Similarity=0.267  Sum_probs=42.9

Q ss_pred             eEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeC--Ccc---cHHHHHhcCCcEEEeCCCC---ccccCC--CCccEEEecC
Q 016265          235 SILVLNGSGGVGSLVIQLAKQVFGASRVAATS--STR---NLEFLKSLGADLAIDYTKD---NFEDLP--EKFDVVYDAI  304 (392)
Q Consensus       235 ~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~--~~~---~~~~~~~~G~~~vi~~~~~---~~~~~~--~~~D~vid~~  304 (392)
                      +|||+||+|-+|...+..+.. .|.+|++++.  ...   +++.+...+--.++..+-.   .+.+..  .++|+||.+.
T Consensus         2 KILVTGatGfIGs~lv~~Ll~-~g~~V~~id~~~~~~~~~~~~~~~~~~~~~~i~~Di~~~~~l~~~~~~~~~d~Vih~a   80 (338)
T d1orra_           2 KLLITGGCGFLGSNLASFALS-QGIDLIVFDNLSRKGATDNLHWLSSLGNFEFVHGDIRNKNDVTRLITKYMPDSCFHLA   80 (338)
T ss_dssp             EEEEETTTSHHHHHHHHHHHH-TTCEEEEEECCCSTTHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHCCSEEEECC
T ss_pred             EEEEECCCcHHHHHHHHHHHH-CcCEEEEEECCCcccchhHHHHhhccCCcEEEEcccCCHHHHHHHHHhcCCceEEeec
Confidence            699999999999998887766 4999988863  122   2334444432233322211   122221  2579999986


Q ss_pred             c
Q 016265          305 G  305 (392)
Q Consensus       305 G  305 (392)
                      +
T Consensus        81 a   81 (338)
T d1orra_          81 G   81 (338)
T ss_dssp             C
T ss_pred             c
Confidence            4

>d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=91.42  E-value=0.38  Score=36.40  Aligned_cols=70  Identities=17%  Similarity=0.121  Sum_probs=43.4

Q ss_pred             eEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCCccccCCCCccEEEecCc--cHHHHHH
Q 016265          235 SILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFEDLPEKFDVVYDAIG--QCDRAVK  312 (392)
Q Consensus       235 ~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~~~~~~~D~vid~~G--~~~~~~~  312 (392)
                      +|.|+|++|-+|++..+++.. .+.+++.......                     .+....+|++||.+.  .....++
T Consensus         2 ki~i~G~~GrMG~~i~~~~~~-~~~~l~~~id~~~---------------------~~~~~~~DVvIDFS~p~~~~~~l~   59 (128)
T d1vm6a3           2 KYGIVGYSGRMGQEIQKVFSE-KGHELVLKVDVNG---------------------VEELDSPDVVIDFSSPEALPKTVD   59 (128)
T ss_dssp             EEEEETTTSHHHHHHHHHHHH-TTCEEEEEEETTE---------------------EEECSCCSEEEECSCGGGHHHHHH
T ss_pred             EEEEECCCCHHHHHHHHHHhc-CCCeEEEEECCCc---------------------HHHhccCCEEEEecCHHHHHHHHH
Confidence            589999999999999999887 5887765532110                     111235688888765  3444444


Q ss_pred             hcccCCeEEEEcCC
Q 016265          313 AIKEGGTVVALTGA  326 (392)
Q Consensus       313 ~l~~~G~iv~~g~~  326 (392)
                      .....+.=+.+|..
T Consensus        60 ~~~~~~~p~ViGTT   73 (128)
T d1vm6a3          60 LCKKYRAGLVLGTT   73 (128)
T ss_dssp             HHHHHTCEEEECCC
T ss_pred             HHHhcCCCEEEEcC
Confidence            44444444445443

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=90.88  E-value=0.57  Score=32.90  Aligned_cols=66  Identities=18%  Similarity=0.259  Sum_probs=46.7

Q ss_pred             CeEEEEcCCCcHHHHH-HHHHHHhcCCeEEEEeCCc-ccHHHHHhcCCcEEEeCCCCccccCCCCccEEEecCc
Q 016265          234 KSILVLNGSGGVGSLV-IQLAKQVFGASRVAATSST-RNLEFLKSLGADLAIDYTKDNFEDLPEKFDVVYDAIG  305 (392)
Q Consensus       234 ~~VlI~Ga~G~vG~~a-iqlak~~~G~~vv~~~~~~-~~~~~~~~~G~~~vi~~~~~~~~~~~~~~D~vid~~G  305 (392)
                      .+|-++| -|++|..+ +++++. .|..|...|..+ +..+.++++|+......+.+++    .+.|+|+-+..
T Consensus         2 ~~ihfiG-IgG~GMs~LA~~L~~-~G~~VsGSD~~~~~~t~~L~~~Gi~i~~gh~~~~i----~~~d~vV~SsA   69 (89)
T d1j6ua1           2 MKIHFVG-IGGIGMSAVALHEFS-NGNDVYGSNIEETERTAYLRKLGIPIFVPHSADNW----YDPDLVIKTPA   69 (89)
T ss_dssp             CEEEEET-TTSHHHHHHHHHHHH-TTCEEEEECSSCCHHHHHHHHTTCCEESSCCTTSC----CCCSEEEECTT
T ss_pred             cEEEEEe-ECHHHHHHHHHHHHh-CCCeEEEEeCCCChhHHHHHHCCCeEEeeeccccc----CCCCEEEEecC
Confidence            3577787 89999865 577777 599999998754 4567789999875444333333    46788886654

>d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Escherichia coli [TaxId: 562]

Probab=90.77  E-value=0.41  Score=37.89  Aligned_cols=94  Identities=23%  Similarity=0.190  Sum_probs=60.6

Q ss_pred             ccchhHHHHHHHHHhcCC-CCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCCccc
Q 016265          213 GLPLAIETAYEGLERTGF-SAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFE  291 (392)
Q Consensus       213 ~l~~~~~ta~~al~~~~~-~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~  291 (392)
                      .+||.....+..|+..++ -.|.+|+|.|-+.-+|.-.+.++.. .|+.|.++......+...                 
T Consensus        16 ~~PcTp~aI~~lL~~y~i~l~GK~v~VIGrS~~VG~Pla~lL~~-~gatVt~~h~~t~~l~~~-----------------   77 (166)
T d1b0aa1          16 LRPCTPRGIVTLLERYNIDTFGLNAVVIGASNIVGRPMSMELLL-AGCTTTVTHRFTKNLRHH-----------------   77 (166)
T ss_dssp             SCCHHHHHHHHHHHHTTCCCTTCEEEEECCCTTTHHHHHHHHHT-TTCEEEEECSSCSCHHHH-----------------
T ss_pred             CCCchHHHHHHHHHHcCcccccceEEEEeccccccHHHHHHHHH-hhccccccccccchhHHH-----------------
Confidence            456665556666665543 4699999999899999998888877 599888776544333221                 


Q ss_pred             cCCCCccEEEecCccHH-HHHHhcccCCeEEEEcCC
Q 016265          292 DLPEKFDVVYDAIGQCD-RAVKAIKEGGTVVALTGA  326 (392)
Q Consensus       292 ~~~~~~D~vid~~G~~~-~~~~~l~~~G~iv~~g~~  326 (392)
                        ....|+++-++|... ---+.+++|..++.+|..
T Consensus        78 --~~~ADivI~a~G~p~~i~~~~vk~g~vvIDvGi~  111 (166)
T d1b0aa1          78 --VENADLLIVAVGKPGFIPGDWIKEGAIVIDVGIN  111 (166)
T ss_dssp             --HHHCSEEEECSCCTTCBCTTTSCTTCEEEECCCE
T ss_pred             --HhhhhHhhhhccCcccccccccCCCcEEEecCce
Confidence              123477777776211 012356777777777643

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=90.73  E-value=0.37  Score=35.75  Aligned_cols=35  Identities=14%  Similarity=0.156  Sum_probs=29.8

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCc
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSST  268 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~  268 (392)
                      ..++++|+| +|.+|+=.++..+. .|.+|.++..++
T Consensus        21 ~p~~i~IiG-~G~ig~E~A~~l~~-~G~~Vtiv~~~~   55 (119)
T d3lada2          21 VPGKLGVIG-AGVIGLELGSVWAR-LGAEVTVLEAMD   55 (119)
T ss_dssp             CCSEEEEEC-CSHHHHHHHHHHHH-TTCEEEEEESSS
T ss_pred             CCCeEEEEC-CChHHHHHHHHHHH-cCCceEEEEeec
Confidence            348899998 99999999999888 499999988654

>d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.67  E-value=0.65  Score=36.87  Aligned_cols=94  Identities=26%  Similarity=0.214  Sum_probs=61.8

Q ss_pred             hccchhHHHHHHHHHhcCCC-CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCCcc
Q 016265          212 AGLPLAIETAYEGLERTGFS-AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNF  290 (392)
Q Consensus       212 a~l~~~~~ta~~al~~~~~~-~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~  290 (392)
                      +.+||.....+..|++.++. .|.+|+|.|-+.-+|.-.+.+... .|+.|.++......+...                
T Consensus        17 ~~~PcTp~aii~lL~~~~i~l~Gk~vvVIGrS~iVGrPLa~lL~~-~gatVt~~~~~t~~l~~~----------------   79 (170)
T d1a4ia1          17 CFIPCTPKGCLELIKETGVPIAGRHAVVVGRSKIVGAPMHDLLLW-NNATVTTCHSKTAHLDEE----------------   79 (170)
T ss_dssp             CCCCHHHHHHHHHHHTTTCCCTTCEEEEECCCTTTHHHHHHHHHH-TTCEEEEECTTCSSHHHH----------------
T ss_pred             CCCCChHHHHHHHHHHhCcccccceEEEEecCCccchHHHHHHHh-ccCceEEEecccccHHHH----------------
Confidence            44577666666667765543 789999999899999998888887 599888877644443321                


Q ss_pred             ccCCCCccEEEecCccHH-HHHHhcccCCeEEEEcC
Q 016265          291 EDLPEKFDVVYDAIGQCD-RAVKAIKEGGTVVALTG  325 (392)
Q Consensus       291 ~~~~~~~D~vid~~G~~~-~~~~~l~~~G~iv~~g~  325 (392)
                         .+..|+++-++|..+ .--+.+++|-.++.+|.
T Consensus        80 ---~~~aDivi~a~G~~~~i~~~~vk~g~iviDvgi  112 (170)
T d1a4ia1          80 ---VNKGDILVVATGQPEMVKGEWIKPGAIVIDCGI  112 (170)
T ss_dssp             ---HTTCSEEEECCCCTTCBCGGGSCTTCEEEECCC
T ss_pred             ---HhhccchhhccccccccccccccCCCeEeccCc
Confidence               124566666666321 11235677777776654

>d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=90.61  E-value=0.13  Score=44.74  Aligned_cols=37  Identities=22%  Similarity=0.196  Sum_probs=30.4

Q ss_pred             CCCeEEEEcCCC--cHHHHHHHHHHHhcCCeEEEEeCCcc
Q 016265          232 AGKSILVLNGSG--GVGSLVIQLAKQVFGASRVAATSSTR  269 (392)
Q Consensus       232 ~g~~VlI~Ga~G--~vG~~aiqlak~~~G~~vv~~~~~~~  269 (392)
                      .|+++||+||+|  ++|.+.++.+.. .|++|++..+++.
T Consensus         7 ~gK~alVTGass~~GIG~aiA~~la~-~Ga~Vvi~~~~~~   45 (297)
T d1d7oa_           7 RGKRAFIAGIADDNGYGWAVAKSLAA-AGAEILVGTWVPA   45 (297)
T ss_dssp             TTCEEEEECCSSSSSHHHHHHHHHHH-TTCEEEEEEEHHH
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHH-CCCEEEEEeCchh
Confidence            688999999876  899998777766 4999998887554

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=90.60  E-value=0.24  Score=40.58  Aligned_cols=70  Identities=19%  Similarity=0.190  Sum_probs=47.0

Q ss_pred             HhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCC-eEEEEeCCcccHHHHHhcCCc-EEEeCCCCccccCCCCccEEEec
Q 016265          226 ERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGA-SRVAATSSTRNLEFLKSLGAD-LAIDYTKDNFEDLPEKFDVVYDA  303 (392)
Q Consensus       226 ~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~-~vv~~~~~~~~~~~~~~~G~~-~vi~~~~~~~~~~~~~~D~vid~  303 (392)
                      ...++ .|++||=.| +|. |.+++.+++.  |+ +|+.++.+++..+.+++.-.+ .++.   .++.+..+.||+||..
T Consensus        43 ~~~dl-~Gk~VLDlG-cGt-G~l~i~a~~~--ga~~V~~vDid~~a~~~ar~N~~~~~~~~---~D~~~l~~~fD~Vi~N  114 (197)
T d1ne2a_          43 NDGNI-GGRSVIDAG-TGN-GILACGSYLL--GAESVTAFDIDPDAIETAKRNCGGVNFMV---ADVSEISGKYDTWIMN  114 (197)
T ss_dssp             HHTSS-BTSEEEEET-CTT-CHHHHHHHHT--TBSEEEEEESCHHHHHHHHHHCTTSEEEE---CCGGGCCCCEEEEEEC
T ss_pred             HcCCC-CCCEEEEeC-CCC-cHHHHHHHHc--CCCcccccccCHHHHHHHHHccccccEEE---EehhhcCCcceEEEeC
Confidence            34444 699999987 553 6777766653  65 688888888888888765332 2333   2345566789999865

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=90.55  E-value=0.14  Score=44.69  Aligned_cols=90  Identities=17%  Similarity=0.193  Sum_probs=58.3

Q ss_pred             CCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhc----CCc------EEEeCCCCccc---cCCC
Q 016265          229 GFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSL----GAD------LAIDYTKDNFE---DLPE  295 (392)
Q Consensus       229 ~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~----G~~------~vi~~~~~~~~---~~~~  295 (392)
                      +.+.+.+||=+|  .|.|..++.+|+.  |++|+.++.|++-++.+++.    +..      .+.+.+-....   ...+
T Consensus        53 ~~~~~~~vLD~G--cG~G~~~~~la~~--g~~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (292)
T d1xvaa_          53 RQHGCHRVLDVA--CGTGVDSIMLVEE--GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGD  128 (292)
T ss_dssp             HHTTCCEEEESS--CTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCCTT
T ss_pred             hhcCCCEEEEec--CCCcHHHHHHHHc--CCeeeeccCchHHHHHHHHHHHhcccccccceeeeeeccccccccccCCCC
Confidence            345678899886  4558899999974  89999999999877776542    211      11111110010   1245


Q ss_pred             CccEEEecCc-----------------cHHHHHHhcccCCeEEE
Q 016265          296 KFDVVYDAIG-----------------QCDRAVKAIKEGGTVVA  322 (392)
Q Consensus       296 ~~D~vid~~G-----------------~~~~~~~~l~~~G~iv~  322 (392)
                      ++|+|+....                 .+..+.+.|+|||.++.
T Consensus       129 ~fd~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~  172 (292)
T d1xvaa_         129 GFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVI  172 (292)
T ss_dssp             CEEEEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEE
T ss_pred             CceEEEEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEE
Confidence            7999885421                 14678889999999876

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=90.55  E-value=0.54  Score=37.34  Aligned_cols=90  Identities=10%  Similarity=0.040  Sum_probs=56.3

Q ss_pred             CeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcE---EEeCCCCccccCCCCccEEEecCcc----
Q 016265          234 KSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADL---AIDYTKDNFEDLPEKFDVVYDAIGQ----  306 (392)
Q Consensus       234 ~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~---vi~~~~~~~~~~~~~~D~vid~~G~----  306 (392)
                      .+|.|+| .|.+|...+.-+.. .|.+|++.+++++|.+.+.+.++..   .......+..+.....|.++-++..    
T Consensus         3 ~nIg~IG-lG~MG~~mA~~L~~-~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ii~~~~~~~~v   80 (176)
T d2pgda2           3 ADIALIG-LAVMGQNLILNMND-HGFVVCAFNRTVSKVDDFLANEAKGTKVLGAHSLEEMVSKLKKPRRIILLVKAGQAV   80 (176)
T ss_dssp             BSEEEEC-CSHHHHHHHHHHHH-TTCCEEEECSSTHHHHHHHHTTTTTSSCEECSSHHHHHHHBCSSCEEEECSCTTHHH
T ss_pred             CcEEEEe-EhHHHHHHHHHHHH-CCCeEEEEcCCHHHHHHHHHhccccccccchhhhhhhhhhhcccceEEEecCchHHH
Confidence            4688998 99999876665555 4999999999999988887655421   1111111222234456777766541    


Q ss_pred             ---HHHHHHhcccCCeEEEEcC
Q 016265          307 ---CDRAVKAIKEGGTVVALTG  325 (392)
Q Consensus       307 ---~~~~~~~l~~~G~iv~~g~  325 (392)
                         .+.....++++-.++.++.
T Consensus        81 ~~v~~~l~~~~~~g~iiid~sT  102 (176)
T d2pgda2          81 DNFIEKLVPLLDIGDIIIDGGN  102 (176)
T ss_dssp             HHHHHHHHHHCCTTCEEEECSC
T ss_pred             HHHHHHHHhccccCcEEEecCc
Confidence               2455556666666666543

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=90.38  E-value=0.18  Score=37.28  Aligned_cols=38  Identities=18%  Similarity=0.354  Sum_probs=31.8

Q ss_pred             CCCC-CeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcc
Q 016265          230 FSAG-KSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTR  269 (392)
Q Consensus       230 ~~~g-~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~  269 (392)
                      +.++ .+|.|+| +|.+|.+.++-|+.+ |.++++.+.+++
T Consensus         7 ~~~~~~kigIlG-gGQL~rMla~aA~~l-G~~v~v~d~~~~   45 (111)
T d1kjqa2           7 LRPAATRVMLLG-SGELGKEVAIECQRL-GVEVIAVDRYAD   45 (111)
T ss_dssp             TSTTCCEEEEES-CSHHHHHHHHHHHTT-TCEEEEEESSTT
T ss_pred             CCCCCCEEEEEe-CCHHHHHHHHHHHHC-CCEEEEEcCCCC
Confidence            3455 4699998 999999999999995 999999987554

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=90.30  E-value=0.19  Score=43.55  Aligned_cols=91  Identities=18%  Similarity=0.137  Sum_probs=54.3

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCC-------------c---EEEeCCCCccccCC
Q 016265          231 SAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGA-------------D---LAIDYTKDNFEDLP  294 (392)
Q Consensus       231 ~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~-------------~---~vi~~~~~~~~~~~  294 (392)
                      ...++|||+|++  .|..+-.++++ ...++.+++.+++=.+.++++-.             +   .++..+...+.+..
T Consensus        71 ~~p~~vLiiG~G--~G~~~~~~l~~-~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~  147 (276)
T d1mjfa_          71 PKPKRVLVIGGG--DGGTVREVLQH-DVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNN  147 (276)
T ss_dssp             SCCCEEEEEECT--TSHHHHHHTTS-CCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHC
T ss_pred             CCCceEEEecCC--chHHHHHHHHh-CCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhcc
Confidence            445789999843  34445556664 34567777777776777765321             1   12222221222235


Q ss_pred             CCccEEE-ecCc------c------HHHHHHhcccCCeEEEEc
Q 016265          295 EKFDVVY-DAIG------Q------CDRAVKAIKEGGTVVALT  324 (392)
Q Consensus       295 ~~~D~vi-d~~G------~------~~~~~~~l~~~G~iv~~g  324 (392)
                      +++|+|| |+..      .      ++.+.++|+++|.++.-+
T Consensus       148 ~~yDvIi~D~~~~~~~~~~L~t~eF~~~~~~~L~~~Gv~v~q~  190 (276)
T d1mjfa_         148 RGFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQA  190 (276)
T ss_dssp             CCEEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCCCEEEEeCCCCCCCcccccCHHHHHhhHhhcCCCceEEEec
Confidence            6799887 3432      1      478889999999988653

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=90.16  E-value=0.16  Score=43.87  Aligned_cols=72  Identities=21%  Similarity=0.393  Sum_probs=45.2

Q ss_pred             CCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcc-----cHHH---HHhcCCcEEE-eCCC-CccccCCCCccEEEe
Q 016265          233 GKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTR-----NLEF---LKSLGADLAI-DYTK-DNFEDLPEKFDVVYD  302 (392)
Q Consensus       233 g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~-----~~~~---~~~~G~~~vi-~~~~-~~~~~~~~~~D~vid  302 (392)
                      -.+|||+||+|-+|...+..+.. .|.+|++++++..     +.+.   +...+++.+. |..+ ..+.....+.+.++.
T Consensus         3 k~KILVtGatG~iG~~l~~~L~~-~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~v~~v~~d~~d~~~~~~~~~~~~~~~~   81 (312)
T d1qyda_           3 KSRVLIVGGTGYIGKRIVNASIS-LGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLDDHQRLVDALKQVDVVIS   81 (312)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHH-TTCCEEEECCSCCSSCHHHHHHHHHHHTTTCEEECCCSSCHHHHHHHHTTCSEEEE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHh-CCCEEEEEECCCcccchhHHHHHhhhccCCcEEEEeecccchhhhhhccCcchhhh
Confidence            35699999999999999887777 4999999887543     2222   2334444332 2222 122233457788887


Q ss_pred             cCc
Q 016265          303 AIG  305 (392)
Q Consensus       303 ~~G  305 (392)
                      +.+
T Consensus        82 ~~~   84 (312)
T d1qyda_          82 ALA   84 (312)
T ss_dssp             CCC
T ss_pred             hhh
Confidence            754

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=89.96  E-value=0.15  Score=41.09  Aligned_cols=35  Identities=14%  Similarity=0.140  Sum_probs=28.8

Q ss_pred             CCeEEEEcCCCcHHHHHHHHHHHhcCCe-EEEEeCCcc
Q 016265          233 GKSILVLNGSGGVGSLVIQLAKQVFGAS-RVAATSSTR  269 (392)
Q Consensus       233 g~~VlI~Ga~G~vG~~aiqlak~~~G~~-vv~~~~~~~  269 (392)
                      +++|+|+| +|..|+.++..++. .|.+ |.++++++.
T Consensus         4 ~~kVaIIG-aGpaGl~aA~~l~~-~G~~~V~v~E~~~~   39 (196)
T d1gtea4           4 SAKIALLG-AGPASISCASFLAR-LGYSDITIFEKQEY   39 (196)
T ss_dssp             GCCEEEEC-CSHHHHHHHHHHHH-TTCCCEEEEESSSS
T ss_pred             CCEEEEEC-ChHHHHHHHHHHHH-CCCCeEEEEEecCc
Confidence            67899998 99999999988887 4985 778776543

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=89.92  E-value=0.13  Score=43.77  Aligned_cols=34  Identities=18%  Similarity=0.163  Sum_probs=28.9

Q ss_pred             CCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCc
Q 016265          233 GKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSST  268 (392)
Q Consensus       233 g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~  268 (392)
                      |++|+|+| +|..|++|+..++. .|.+|.+++.++
T Consensus         1 ~KkV~IIG-aG~aGL~aA~~La~-~G~~V~vlE~~~   34 (373)
T d1seza1           1 AKRVAVIG-AGVSGLAAAYKLKI-HGLNVTVFEAEG   34 (373)
T ss_dssp             CCEEEEEC-CSHHHHHHHHHHHT-TSCEEEEECSSS
T ss_pred             CCEEEEEC-cCHHHHHHHHHHHh-CCCCEEEEeCCC
Confidence            57899998 99999999888877 499999998643

>d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Escherichia coli [TaxId: 562]

Probab=89.91  E-value=0.1  Score=41.54  Aligned_cols=93  Identities=15%  Similarity=0.145  Sum_probs=52.5

Q ss_pred             eEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCC----cEEEeCCCCccccCCCCccEEEecCc--cHH
Q 016265          235 SILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGA----DLAIDYTKDNFEDLPEKFDVVYDAIG--QCD  308 (392)
Q Consensus       235 ~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~----~~vi~~~~~~~~~~~~~~D~vid~~G--~~~  308 (392)
                      +|+|.|++|-+|++.++++....+.+++.....+.....-+.+|-    ...-.....+.....+.+|++||.+-  ...
T Consensus         6 kI~i~Ga~GrMG~~i~~~i~~~~~~~lv~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~DViIDFs~p~~~~   85 (162)
T d1diha1           6 RVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAGKTGVTVQSSLDAVKDDFDVFIDFTRPEGTL   85 (162)
T ss_dssp             EEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTCSCCTTCSSSSSCCSCCEESCSTTTTTSCSEEEECSCHHHHH
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecccchhccchhhhhhccccCCceeeccHHHHhcccceEEEeccHHHHH
Confidence            689999899999999999877446666655433221111111110    00000001122334457899999976  345


Q ss_pred             HHHHhcccCCeEEEEcCCC
Q 016265          309 RAVKAIKEGGTVVALTGAV  327 (392)
Q Consensus       309 ~~~~~l~~~G~iv~~g~~~  327 (392)
                      ..++.....|.=+.+|...
T Consensus        86 ~~~~~a~~~~~~~ViGTTG  104 (162)
T d1diha1          86 NHLAFCRQHGKGMVIGTTG  104 (162)
T ss_dssp             HHHHHHHHTTCEEEECCCC
T ss_pred             HHHHHHHhccceeEEecCC
Confidence            5556666666666666544

>d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Leucine dehydrogenase
species: Bacillus sphaericus [TaxId: 1421]

Probab=89.85  E-value=0.85  Score=38.06  Aligned_cols=67  Identities=16%  Similarity=0.115  Sum_probs=48.2

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHH-hcCCcEEEeCCCCccccCCCCccEEEecC
Q 016265          231 SAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLK-SLGADLAIDYTKDNFEDLPEKFDVVYDAI  304 (392)
Q Consensus       231 ~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~-~~G~~~vi~~~~~~~~~~~~~~D~vid~~  304 (392)
                      -.|.+|+|.| .|.+|..+++++.. .|+++++++.+..+.+.+. ..|+..+ +.  +  +-....+|+++=|.
T Consensus        37 l~g~~v~IqG-~GnVG~~~a~~L~~-~Gakvv~~d~~~~~~~~~~~~~g~~~~-~~--~--~~~~~~cDIl~PcA  104 (230)
T d1leha1          37 LEGLAVSVQG-LGNVAKALCKKLNT-EGAKLVVTDVNKAAVSAAVAEEGADAV-AP--N--AIYGVTCDIFAPCA  104 (230)
T ss_dssp             CTTCEEEEEC-CSHHHHHHHHHHHH-TTCEEEEECSCHHHHHHHHHHHCCEEC-CG--G--GTTTCCCSEEEECS
T ss_pred             CCCCEEEEEC-CCHHHHHHHHHHHH-CCCEEEeecccHHHHHHHHHhcCCccc-CC--c--ccccccccEecccc
Confidence            4789999998 99999999999998 4999999988887776654 4565432 21  1  11233567776663

>d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Virulence factor MviM
species: Escherichia coli [TaxId: 562]

Probab=89.85  E-value=1.9  Score=33.39  Aligned_cols=83  Identities=16%  Similarity=0.185  Sum_probs=51.6

Q ss_pred             eEEEEcCCCcHHHH-HHHHHHHhcCCeEEEE-eCCcccHH-HHHhcCCcEEEeCCCCccccCCCCccEEEecCc---cHH
Q 016265          235 SILVLNGSGGVGSL-VIQLAKQVFGASRVAA-TSSTRNLE-FLKSLGADLAIDYTKDNFEDLPEKFDVVYDAIG---QCD  308 (392)
Q Consensus       235 ~VlI~Ga~G~vG~~-aiqlak~~~G~~vv~~-~~~~~~~~-~~~~~G~~~vi~~~~~~~~~~~~~~D~vid~~G---~~~  308 (392)
                      +|.|+| +|.+|.- .+...+...+.+++.+ +.+.++.+ .+++++... ++    ++.++.+.+|+|+-|+.   ..+
T Consensus         3 ri~iIG-~G~~g~~~~~~~l~~~~~~~i~~v~d~~~~~~~~~~~~~~~~~-~~----~~~~l~~~~D~V~I~tp~~~h~~   76 (164)
T d1tlta1           3 RIGVVG-LGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESWRIPY-AD----SLSSLAASCDAVFVHSSTASHFD   76 (164)
T ss_dssp             EEEEEC-CSTHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHHHHTCCB-CS----SHHHHHTTCSEEEECSCTTHHHH
T ss_pred             EEEEEc-CCHHHHHHHHHHHHhCCCcEEEEEEechhHhhhhhhhcccccc-cc----cchhhhhhcccccccccchhccc
Confidence            588998 8999964 5555554346677655 45566544 456777642 22    23333356899999986   356


Q ss_pred             HHHHhcccCCeEEEEc
Q 016265          309 RAVKAIKEGGTVVALT  324 (392)
Q Consensus       309 ~~~~~l~~~G~iv~~g  324 (392)
                      .+..++..| +=|.+.
T Consensus        77 ~~~~al~~g-k~V~~E   91 (164)
T d1tlta1          77 VVSTLLNAG-VHVCVD   91 (164)
T ss_dssp             HHHHHHHTT-CEEEEE
T ss_pred             ccccccccc-ceeecc
Confidence            777777665 445553

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=89.79  E-value=1  Score=31.98  Aligned_cols=70  Identities=17%  Similarity=0.163  Sum_probs=49.5

Q ss_pred             CCCCCeEEEEcCCCcHHHHH-HHHHHHhcCCeEEEEeCC-cccHHHHHhcCCcEEEeCCCCccccCCCCccEEEecCc
Q 016265          230 FSAGKSILVLNGSGGVGSLV-IQLAKQVFGASRVAATSS-TRNLEFLKSLGADLAIDYTKDNFEDLPEKFDVVYDAIG  305 (392)
Q Consensus       230 ~~~g~~VlI~Ga~G~vG~~a-iqlak~~~G~~vv~~~~~-~~~~~~~~~~G~~~vi~~~~~~~~~~~~~~D~vid~~G  305 (392)
                      .+..+++.++| -|++|..+ +++++.. |..|...|.. ....+.+++.|......+.....    .+.|+|+=..+
T Consensus         5 ~~~~~~ihfiG-igG~GMs~LA~~L~~~-G~~VsGSD~~~~~~~~~L~~~Gi~v~~g~~~~~i----~~~d~vV~S~A   76 (96)
T d1p3da1           5 MRRVQQIHFIG-IGGAGMSGIAEILLNE-GYQISGSDIADGVVTQRLAQAGAKIYIGHAEEHI----EGASVVVVSSA   76 (96)
T ss_dssp             CTTCCEEEEET-TTSTTHHHHHHHHHHH-TCEEEEEESCCSHHHHHHHHTTCEEEESCCGGGG----TTCSEEEECTT
T ss_pred             chhCCEEEEEE-ECHHHHHHHHHHHHhC-CCEEEEEeCCCChhhhHHHHCCCeEEECCccccC----CCCCEEEECCC
Confidence            45567899998 89999877 7888884 9999998874 33456677889865444433322    46788876655

>d1gado1 c.2.1.3 (O:0-148,O:313-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Escherichia coli [TaxId: 562]

Probab=89.71  E-value=0.4  Score=38.00  Aligned_cols=93  Identities=22%  Similarity=0.322  Sum_probs=55.5

Q ss_pred             eEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeC--CcccHHHHHhc----C---CcE-------EEeCC------CCcccc
Q 016265          235 SILVLNGSGGVGSLVIQLAKQVFGASRVAATS--STRNLEFLKSL----G---ADL-------AIDYT------KDNFED  292 (392)
Q Consensus       235 ~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~--~~~~~~~~~~~----G---~~~-------vi~~~------~~~~~~  292 (392)
                      +|.|.| -|-+|+++...+......+++++-.  +.+.+.++-++    |   .+.       +++..      ..+..+
T Consensus         3 kigING-FGRIGR~v~R~~~~~~~i~ivaINd~~~~~~~ayLl~yDSvhG~~~~~v~~~~~~l~ing~~I~i~~~~~p~~   81 (166)
T d1gado1           3 KVGING-FGRIGRIVFRAAQKRSDIEIVAINDLLDADYMAYMLKYDSTHGRFDGTVEVKDGHLIVNGKKIRVTAERDPAN   81 (166)
T ss_dssp             EEEEEC-CSHHHHHHHHHHHTCSSEEEEEEECSSCHHHHHHHHHCCTTTCSCSSCEEEETTEEEETTEEEEEECCSSGGG
T ss_pred             EEEEEC-CcHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHhhhheecCCCCCcCCeEEEeCCEEEECCEEEEEEeCCChHH
Confidence            578998 9999999998876532345555543  22334444332    2   111       11110      111112


Q ss_pred             CC---CCccEEEecCc---cHHHHHHhcccCCeEEEEcCCCC
Q 016265          293 LP---EKFDVVYDAIG---QCDRAVKAIKEGGTVVALTGAVT  328 (392)
Q Consensus       293 ~~---~~~D~vid~~G---~~~~~~~~l~~~G~iv~~g~~~~  328 (392)
                      +.   .++|+|+||+|   ..+.+...+..|-+-|.++.+..
T Consensus        82 i~W~~~gvDiViEcTG~f~t~~~~~~hl~~gakkViiSaP~~  123 (166)
T d1gado1          82 LKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVMTGPSK  123 (166)
T ss_dssp             GCHHHHTCSEEEECSSSCCSHHHHTHHHHTTCSEEEESSCCS
T ss_pred             CCccccCCCEEEEccccccCHHHHHHHhcCCCceEEeecccc
Confidence            11   27999999999   35778888888887788876653

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=89.69  E-value=0.19  Score=44.53  Aligned_cols=37  Identities=19%  Similarity=0.258  Sum_probs=32.2

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcc
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTR  269 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~  269 (392)
                      .|++|||+||+|-+|...++.+.. .|.+|+++++...
T Consensus         7 ~~KkILVTG~tGfIGs~lv~~Ll~-~g~~V~~~~r~~~   43 (356)
T d1rkxa_           7 QGKRVFVTGHTGFKGGWLSLWLQT-MGATVKGYSLTAP   43 (356)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHH-TTCEEEEEESSCS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHH-CCCEEEEEECCCC
Confidence            578999999999999999998888 4999999987554

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.64  E-value=0.25  Score=40.30  Aligned_cols=39  Identities=23%  Similarity=0.258  Sum_probs=32.3

Q ss_pred             CeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHH
Q 016265          234 KSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFL  274 (392)
Q Consensus       234 ~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~  274 (392)
                      ++|.|+| +|.+|...++++.. .|.+|++.+.+++.++.+
T Consensus         5 kkvaViG-aG~mG~~iA~~~a~-~G~~V~l~D~~~~~l~~a   43 (192)
T d1f0ya2           5 KHVTVIG-GGLMGAGIAQVAAA-TGHTVVLVDQTEDILAKS   43 (192)
T ss_dssp             CEEEEEC-CSHHHHHHHHHHHH-TTCEEEEECSCHHHHHHH
T ss_pred             EEEEEEC-cCHHHHHHHHHHHh-CCCcEEEEECChHHHHHH
Confidence            5899998 89999987777766 599999999988766544

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=89.56  E-value=0.61  Score=35.92  Aligned_cols=53  Identities=17%  Similarity=0.191  Sum_probs=41.1

Q ss_pred             CeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCC
Q 016265          234 KSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTK  287 (392)
Q Consensus       234 ~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~  287 (392)
                      .+|+|+||.|.+|...+...+. .|.+|.+.++...........+++.++....
T Consensus        10 ~kI~iIGg~G~mG~~la~~L~~-~G~~V~~~d~~~~~~~~~~~~~~~~v~~~~~   62 (152)
T d2pv7a2          10 HKIVIVGGYGKLGGLFARYLRA-SGYPISILDREDWAVAESILANADVVIVSVP   62 (152)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHT-TTCCEEEECTTCGGGHHHHHTTCSEEEECSC
T ss_pred             CeEEEEcCCCHHHHHHHHHHHH-cCCCcEecccccccccchhhhhccccccccc
Confidence            5899999899999998888877 4999999998776655555566777665443

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=89.46  E-value=0.15  Score=35.15  Aligned_cols=33  Identities=21%  Similarity=0.356  Sum_probs=29.1

Q ss_pred             CeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCc
Q 016265          234 KSILVLNGSGGVGSLVIQLAKQVFGASRVAATSST  268 (392)
Q Consensus       234 ~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~  268 (392)
                      ++|.|+| +|-+|.|.++-|+.+ |.++++.+..+
T Consensus         2 k~vgIlG-~GQLgrMl~~Aa~~L-G~~v~vldp~~   34 (78)
T d3etja2           2 KQVCVLG-NGQLGRMLRQAGEPL-GIAVWPVGLDA   34 (78)
T ss_dssp             EEEEEEB-CSHHHHHHHHHHGGG-TEEEEEECTTS
T ss_pred             CEEEEEc-CCHHHHHHHHHHHHc-CCEEEEEcCCC
Confidence            4799998 999999999999985 99999988644

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=89.40  E-value=1.3  Score=33.97  Aligned_cols=71  Identities=15%  Similarity=0.168  Sum_probs=42.0

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHHHHhcCC--eEEEEeCCcccHH-HHHhc------CCcEEEeCCCCccccCCCCccEEE
Q 016265          231 SAGKSILVLNGSGGVGSLVIQLAKQVFGA--SRVAATSSTRNLE-FLKSL------GADLAIDYTKDNFEDLPEKFDVVY  301 (392)
Q Consensus       231 ~~g~~VlI~Ga~G~vG~~aiqlak~~~G~--~vv~~~~~~~~~~-~~~~~------G~~~vi~~~~~~~~~~~~~~D~vi  301 (392)
                      ..+.+|.|+| +|.+|...+..+... +.  +++..+..+++.+ .+.++      -...+... ..+. +..++.|+|+
T Consensus         4 ~~~~KI~IiG-aG~vG~~~a~~l~~~-~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~~~-~~d~-~~l~daDvvv   79 (148)
T d1ldna1           4 NGGARVVVIG-AGFVGASYVFALMNQ-GIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIW-HGDY-DDCRDADLVV   79 (148)
T ss_dssp             TTSCEEEEEC-CSHHHHHHHHHHHHH-TCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEE-ECCG-GGTTTCSEEE
T ss_pred             CCCCeEEEEC-cCHHHHHHHHHHHhc-CCCceEEEEeeccccccchhccHhhCccccCCCeEEE-ECCH-HHhccceeEE
Confidence            3467899998 699999888777663 53  5777777766522 11111      11111111 1122 2345789999


Q ss_pred             ecCc
Q 016265          302 DAIG  305 (392)
Q Consensus       302 d~~G  305 (392)
                      -+.|
T Consensus        80 itag   83 (148)
T d1ldna1          80 ICAG   83 (148)
T ss_dssp             ECCS
T ss_pred             Eecc
Confidence            8877

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.35  E-value=0.25  Score=38.28  Aligned_cols=34  Identities=21%  Similarity=0.239  Sum_probs=28.8

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeC
Q 016265          231 SAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATS  266 (392)
Q Consensus       231 ~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~  266 (392)
                      -.|.+|||.| +|.+|.--+..+.. .|++++++..
T Consensus        11 l~gkrvLViG-gG~va~~ka~~Ll~-~GA~VtVvap   44 (150)
T d1kyqa1          11 LKDKRILLIG-GGEVGLTRLYKLMP-TGCKLTLVSP   44 (150)
T ss_dssp             CTTCEEEEEE-ESHHHHHHHHHHGG-GTCEEEEEEE
T ss_pred             eCCCEEEEEC-CCHHHHHHHHHHHH-CCCEEEEEeC
Confidence            3689999999 89999998888877 4999988864

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=89.35  E-value=0.21  Score=41.99  Aligned_cols=35  Identities=14%  Similarity=0.093  Sum_probs=29.5

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCc
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSST  268 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~  268 (392)
                      ..++|+|+| +|..|++++..++. .|.+|++.++++
T Consensus         3 ~~~kV~IiG-aG~aGl~~A~~L~~-~G~~v~v~Er~~   37 (265)
T d2voua1           3 TTDRIAVVG-GSISGLTAALMLRD-AGVDVDVYERSP   37 (265)
T ss_dssp             CCSEEEEEC-CSHHHHHHHHHHHH-TTCEEEEECSSS
T ss_pred             CCCcEEEEC-cCHHHHHHHHHHHH-CCCCEEEEeCCC
Confidence            357899998 99999998888877 499999998643

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=89.23  E-value=0.59  Score=35.33  Aligned_cols=38  Identities=16%  Similarity=0.179  Sum_probs=31.7

Q ss_pred             CCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCc
Q 016265          229 GFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSST  268 (392)
Q Consensus       229 ~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~  268 (392)
                      .++.+++|+|+| +|.+|+=++..++. .|.+|.++...+
T Consensus        31 ~~~~~k~v~VIG-gG~iG~E~A~~l~~-~g~~Vtvie~~~   68 (133)
T d1q1ra2          31 QLIADNRLVVIG-GGYIGLEVAATAIK-ANMHVTLLDTAA   68 (133)
T ss_dssp             TCCTTCEEEEEC-CSHHHHHHHHHHHH-TTCEEEEECSSS
T ss_pred             hhccCCEEEEEC-CchHHHHHHHHHHh-hCcceeeeeecc
Confidence            356678999998 99999998888888 499999888644

>d3cmco1 c.2.1.3 (O:0-148,O:313-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Bacillus stearothermophilus, nca 1503 [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Bacillus stearothermophilus, nca 1503 [TaxId: 1422]

Probab=89.20  E-value=1  Score=35.65  Aligned_cols=93  Identities=20%  Similarity=0.318  Sum_probs=53.4

Q ss_pred             eEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeC--CcccHHHHHhc----C---CcE-------EEe------CCCCcccc
Q 016265          235 SILVLNGSGGVGSLVIQLAKQVFGASRVAATS--STRNLEFLKSL----G---ADL-------AID------YTKDNFED  292 (392)
Q Consensus       235 ~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~--~~~~~~~~~~~----G---~~~-------vi~------~~~~~~~~  292 (392)
                      +|.|.| -|-+|+++...+-.--..+++++-.  ..+.+.++-++    |   .+.       +++      +...+..+
T Consensus         3 kIgING-fGRIGR~v~R~~l~~~~~~ivaINd~~d~~~~ayll~yDS~hG~~~~~v~~~~~~l~i~g~~i~i~~~~~p~~   81 (171)
T d3cmco1           3 KVGING-FGRIGRNVFRAALKNPDIEVVAVNDLTDANTLAHLLKYDSVHGRLDAEVSVNGNNLVVNGKEIIVKAERDPEN   81 (171)
T ss_dssp             EEEEES-CSHHHHHHHHHHTTCTTEEEEEEECSSCHHHHHHHHHEETTTEECSSCEEEETTEEEETTEEEEEECCSSGGG
T ss_pred             EEEEEC-CCHHHHHHHHHHhhCCCcEEEEEcCCCCHHHHhhhhcccccCCcccccccccCCCEEeCCcceeeEecCCHHH
Confidence            578998 9999999887775422344554432  22334444332    1   110       111      11111222


Q ss_pred             CC---CCccEEEecCc---cHHHHHHhcccCCeEEEEcCCCC
Q 016265          293 LP---EKFDVVYDAIG---QCDRAVKAIKEGGTVVALTGAVT  328 (392)
Q Consensus       293 ~~---~~~D~vid~~G---~~~~~~~~l~~~G~iv~~g~~~~  328 (392)
                      +.   -++|+|+||+|   ..+.+...+..|-+-|.++.+..
T Consensus        82 i~W~~~~vDiViEcTG~f~t~~~~~~hl~~gakkViiSap~~  123 (171)
T d3cmco1          82 LAWGEIGVDIVVESTGRFTKREDAAKHLEAGAKKVIISAPAK  123 (171)
T ss_dssp             CCTGGGTCCEEEECSSSCCBHHHHTHHHHTTCSEEEESSCCB
T ss_pred             ccccccCCcEEEEecCccCCHHHHHHHHhCCCceEEEecccc
Confidence            21   27999999999   35777888888877777766553

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=89.12  E-value=0.33  Score=39.31  Aligned_cols=103  Identities=17%  Similarity=0.190  Sum_probs=69.3

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCCccccCCCCccEEEecCc------
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFEDLPEKFDVVYDAIG------  305 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~~~~~~~D~vid~~G------  305 (392)
                      .|.+|+|+| .|.+|...+++++. +|++|++.+....+..       +.....  ..+.++-...|+++-+..      
T Consensus        43 ~~~~vgiiG-~G~IG~~va~~l~~-fg~~v~~~d~~~~~~~-------~~~~~~--~~l~ell~~sDii~i~~plt~~T~  111 (188)
T d1sc6a1          43 RGKKLGIIG-YGHIGTQLGILAES-LGMYVYFYDIENKLPL-------GNATQV--QHLSDLLNMSDVVSLHVPENPSTK  111 (188)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHH-TTCEEEEECSSCCCCC-------TTCEEC--SCHHHHHHHCSEEEECCCSSTTTT
T ss_pred             cceEEEEee-cccchhhhhhhccc-ccceEeeccccccchh-------hhhhhh--hhHHHHHhhccceeecccCCcchh
Confidence            578999998 99999999999998 6999999986432110       011111  123333345688887754      


Q ss_pred             c-H-HHHHHhcccCCeEEEEcCCCCCCceEEEEeecHHHHHHHHHHHHCCCccc
Q 016265          306 Q-C-DRAVKAIKEGGTVVALTGAVTPPGFRFVVTSNGEVLKKLNPYLESGKVKP  357 (392)
Q Consensus       306 ~-~-~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~l~~  357 (392)
                      . + ...++.|+++..+|..+-...         .   +.+.+.+.++++++..
T Consensus       112 ~li~~~~l~~mk~~a~lIN~aRG~l---------v---de~aL~~aL~~~~~~~  153 (188)
T d1sc6a1         112 NMMGAKEISLMKPGSLLINASRGTV---------V---DIPALADALASKHLAG  153 (188)
T ss_dssp             TCBCHHHHHHSCTTEEEEECSCSSS---------B---CHHHHHHHHHTTSEEE
T ss_pred             hhccHHHHhhCCCCCEEEEcCcHHh---------h---hhHHHHHHHHcCCceE
Confidence            1 1 789999999998887754321         1   1356677888888764

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=88.95  E-value=0.52  Score=34.63  Aligned_cols=35  Identities=20%  Similarity=0.271  Sum_probs=30.0

Q ss_pred             CCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcc
Q 016265          233 GKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTR  269 (392)
Q Consensus       233 g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~  269 (392)
                      .++|+|+| +|.+|+=+++.+.. .|.+|.++.+.+.
T Consensus        22 p~~v~IiG-gG~ig~E~A~~l~~-~G~~Vtlve~~~~   56 (117)
T d1ebda2          22 PKSLVVIG-GGYIGIELGTAYAN-FGTKVTILEGAGE   56 (117)
T ss_dssp             CSEEEEEC-CSHHHHHHHHHHHH-TTCEEEEEESSSS
T ss_pred             CCeEEEEC-CCccceeeeeeecc-cccEEEEEEecce
Confidence            37899998 99999999999988 5999999986553

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=88.75  E-value=0.22  Score=42.37  Aligned_cols=33  Identities=15%  Similarity=0.238  Sum_probs=28.4

Q ss_pred             eEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCc
Q 016265          235 SILVLNGSGGVGSLVIQLAKQVFGASRVAATSST  268 (392)
Q Consensus       235 ~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~  268 (392)
                      +|||+||+|-+|...+..++. .|.+|+.+++++
T Consensus         3 KIlItGasGfiG~~l~~~L~~-~g~~Vi~~~r~~   35 (281)
T d1vl0a_           3 KILITGANGQLGREIQKQLKG-KNVEVIPTDVQD   35 (281)
T ss_dssp             EEEEESTTSHHHHHHHHHHTT-SSEEEEEECTTT
T ss_pred             EEEEECCCCHHHHHHHHHHHh-CCCEEEEeechh
Confidence            699999999999998888877 588998887653

>d1wkva1 c.79.1.1 (A:2-383) O-acetylserine sulfhydrylase (Cysteine synthase) {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=88.67  E-value=7.7  Score=34.48  Aligned_cols=55  Identities=16%  Similarity=0.175  Sum_probs=43.1

Q ss_pred             CCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeC---CcccHHHHHhcCCcEEEeC
Q 016265          229 GFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATS---STRNLEFLKSLGADLAIDY  285 (392)
Q Consensus       229 ~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~---~~~~~~~~~~~G~~~vi~~  285 (392)
                      ++++|++|+ ...+|-.|++.+.+|+. .|.+.+++..   ++.|.+.++.+|++.+...
T Consensus       140 ~~~~g~~VV-eaSSGN~GiAlA~~aa~-lGik~~Iv~P~~~~~~K~~~ira~GAeVi~~~  197 (382)
T d1wkva1         140 RVEKGSLVA-DATSSNFGVALSAVARL-YGYRARVYLPGAAEEFGKLLPRLLGAQVIVDP  197 (382)
T ss_dssp             TSCTTCEEE-EECCHHHHHHHHHHHHH-TTCEEEEEEETTSCHHHHHHHHHTTCEEEEET
T ss_pred             ccCCCCEEE-EeCCcHHHHHHHHHHHH-cCCCEEEEeeccccccccccccccCcceeecC
Confidence            467777654 44589999999999998 5998887764   6678888999999876654

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=88.56  E-value=0.19  Score=44.88  Aligned_cols=72  Identities=17%  Similarity=0.140  Sum_probs=44.5

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEE--eCCC-CccccCCCCccEEEecCc
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAI--DYTK-DNFEDLPEKFDVVYDAIG  305 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi--~~~~-~~~~~~~~~~D~vid~~G  305 (392)
                      .+.+|||+||+|-+|...+..+.. .|.+|++++........ .........  |..+ +.+.+..+++|.|+.+.+
T Consensus        14 ~nMKILVTGgsGfIGs~lv~~L~~-~g~~V~~~d~~~~~~~~-~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vih~a~   88 (363)
T d2c5aa1          14 ENLKISITGAGGFIASHIARRLKH-EGHYVIASDWKKNEHMT-EDMFCDEFHLVDLRVMENCLKVTEGVDHVFNLAA   88 (363)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHH-TTCEEEEEESSCCSSSC-GGGTCSEEEECCTTSHHHHHHHHTTCSEEEECCC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHH-CcCEEEEEeCCCccchh-hhcccCcEEEeechhHHHHHHHhhcCCeEeeccc
Confidence            467899999999999999888877 59999988753322111 111111222  2211 112223458999998764

>d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Probable oxidoreductase At4g09670
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=88.49  E-value=3.9  Score=32.05  Aligned_cols=108  Identities=18%  Similarity=0.183  Sum_probs=66.6

Q ss_pred             eEEEEcCCCcHHHHHHHHHHHhcCCeEEEE-eCCcccHHH-HHhcCCc---EEEeCCCCccccC--CCCccEEEecCc--
Q 016265          235 SILVLNGSGGVGSLVIQLAKQVFGASRVAA-TSSTRNLEF-LKSLGAD---LAIDYTKDNFEDL--PEKFDVVYDAIG--  305 (392)
Q Consensus       235 ~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~-~~~~~~~~~-~~~~G~~---~vi~~~~~~~~~~--~~~~D~vid~~G--  305 (392)
                      +|.|+| +|.+|...++..+...+.+++.+ +.++++.+. +++++..   .+++    ++.++  ...+|+|+-|+.  
T Consensus         3 ki~iIG-~G~~g~~~~~~l~~~~~~~i~ai~d~~~~~~~~~~~~~~~~~~~~~~~----~~~~ll~~~~iD~v~I~tp~~   77 (184)
T d1ydwa1           3 RIGVMG-CADIARKVSRAIHLAPNATISGVASRSLEKAKAFATANNYPESTKIHG----SYESLLEDPEIDALYVPLPTS   77 (184)
T ss_dssp             EEEEES-CCTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCCTTCEEES----SHHHHHHCTTCCEEEECCCGG
T ss_pred             EEEEEc-CCHHHHHHHHHHHhCCCCEEEEEEeCCccccccchhccccccceeecC----cHHHhhhccccceeeecccch
Confidence            588998 89999988887776446677755 456665444 4566642   2332    22222  347899999987  


Q ss_pred             -cHHHHHHhcccCCeEEEEcCCCCCCceEEEEeecHHHHHHHHHHHHCCCccc
Q 016265          306 -QCDRAVKAIKEGGTVVALTGAVTPPGFRFVVTSNGEVLKKLNPYLESGKVKP  357 (392)
Q Consensus       306 -~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~l~~  357 (392)
                       ..+.+..++..| +=|.+.-+.         ..+.+.++++.++.++..+..
T Consensus        78 ~h~~~~~~~l~~g-~~v~~EKP~---------~~~~~e~~~l~~~~~~~~~~~  120 (184)
T d1ydwa1          78 LHVEWAIKAAEKG-KHILLEKPV---------AMNVTEFDKIVDACEANGVQI  120 (184)
T ss_dssp             GHHHHHHHHHTTT-CEEEECSSC---------SSSHHHHHHHHHHHHTTTCCE
T ss_pred             hhcchhhhhhhcc-ceeeccccc---------ccCHHHHHHHHHHHHhhCCEE
Confidence             357777788765 444453322         123456666777766655443

>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=88.48  E-value=1.2  Score=38.34  Aligned_cols=96  Identities=23%  Similarity=0.222  Sum_probs=60.4

Q ss_pred             cCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHH----HhcCCcEEE-eCCCCcccc--CCCCccEE
Q 016265          228 TGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFL----KSLGADLAI-DYTKDNFED--LPEKFDVV  300 (392)
Q Consensus       228 ~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~----~~~G~~~vi-~~~~~~~~~--~~~~~D~v  300 (392)
                      ...++|++||=.. +++=|-. .++|..+...++++.+.+..|++.+    +++|...++ ...+.....  ..+.||.|
T Consensus        98 L~~~~g~~vLD~C-AaPGgKt-~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g~~~~~~~~~~~~~~~~~~~~~fd~I  175 (284)
T d1sqga2          98 LAPQNGEHILDLC-AAPGGKT-THILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFDRI  175 (284)
T ss_dssp             HCCCTTCEEEEES-CTTCHHH-HHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHTTCCEEEE
T ss_pred             cCccccceeEecc-Cccccch-hhhhhhhhhhhhhhhhcchhhhhhHhhhhhcccccceeeeccccccchhcccccccEE
Confidence            4678999998775 4443443 3455443346788899999997665    567865333 333222221  23568977


Q ss_pred             E-e--cCcc----------------------------HHHHHHhcccCCeEEEEcC
Q 016265          301 Y-D--AIGQ----------------------------CDRAVKAIKEGGTVVALTG  325 (392)
Q Consensus       301 i-d--~~G~----------------------------~~~~~~~l~~~G~iv~~g~  325 (392)
                      + |  |+|.                            ++.+++.+++||++|....
T Consensus       176 L~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTC  231 (284)
T d1sqga2         176 LLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATC  231 (284)
T ss_dssp             EEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEES
T ss_pred             EEeccccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEeee
Confidence            6 4  4551                            2567778999999986644

>d2b4ro1 c.2.1.3 (O:4-152,O:319-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=88.47  E-value=1.4  Score=34.65  Aligned_cols=93  Identities=22%  Similarity=0.296  Sum_probs=56.0

Q ss_pred             eEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeC---CcccHHHHHhc----C---CcE-------EEeC------CCCccc
Q 016265          235 SILVLNGSGGVGSLVIQLAKQVFGASRVAATS---STRNLEFLKSL----G---ADL-------AIDY------TKDNFE  291 (392)
Q Consensus       235 ~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~---~~~~~~~~~~~----G---~~~-------vi~~------~~~~~~  291 (392)
                      +|.|.| -|-+|+++...+......+++++-.   +.+.+.++-++    |   .+.       +++.      ...+..
T Consensus         2 kigING-fGRIGR~v~R~~~~~~~~~iv~INd~~~d~~~~ayLlkyDS~hG~~~~~v~~~~~~l~i~~~~I~i~~~~~p~   80 (166)
T d2b4ro1           2 KLGING-FGRIGRLVFRAAFGRKDIEVVAINDPFMDLNHLCYLLKYDSVHGQFPCEVTHADGFLLIGEKKVSVFAEKDPS   80 (166)
T ss_dssp             EEEEEC-CSHHHHHHHHHHHTCSSEEEEEEECTTCCHHHHHHHHHCCTTTCSCSSCEEEETTEEEESSCEEEEECCSSGG
T ss_pred             eEEEEC-CCHHHHHHHHHHhhCCCcEEEEECCCCCChHHhhhhhhcccccccceeeeccCCceEEecCcEEEEEeCCChH
Confidence            588998 9999999998876422345555532   23445555443    2   111       1111      111112


Q ss_pred             cCC---CCccEEEecCcc---HHHHHHhcccCCeEEEEcCCCC
Q 016265          292 DLP---EKFDVVYDAIGQ---CDRAVKAIKEGGTVVALTGAVT  328 (392)
Q Consensus       292 ~~~---~~~D~vid~~G~---~~~~~~~l~~~G~iv~~g~~~~  328 (392)
                      ++.   .++|+|+||+|.   .+.+...+..|.+-|.++.+..
T Consensus        81 ~i~W~~~gvdiViEcTG~f~~~~~~~~hl~~gakkViiSAP~k  123 (166)
T d2b4ro1          81 QIPWGKCQVDVVCESTGVFLTKELASSHLKGGAKKVIMSAPPK  123 (166)
T ss_dssp             GCCHHHHTCSEEEECSSSCCSHHHHTHHHHTTCSEEEESSCCS
T ss_pred             HccccccCCCEEEEecccccchhhhhhhhccCCCEEEEecccc
Confidence            221   279999999993   4778888888887777776553

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=88.17  E-value=0.68  Score=38.63  Aligned_cols=91  Identities=19%  Similarity=0.271  Sum_probs=60.9

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHHHHhc-CCeEEEEeCCcccHHHHH----hcCCcEEEeCCCCc----cccC------CC
Q 016265          231 SAGKSILVLNGSGGVGSLVIQLAKQVF-GASRVAATSSTRNLEFLK----SLGADLAIDYTKDN----FEDL------PE  295 (392)
Q Consensus       231 ~~g~~VlI~Ga~G~vG~~aiqlak~~~-G~~vv~~~~~~~~~~~~~----~~G~~~vi~~~~~~----~~~~------~~  295 (392)
                      ..-++||-+|  ..+|..++.+|+.+. +++++.++.+++..+.++    +.|.+.-+.....+    ..++      .+
T Consensus        58 ~~~k~iLEiG--T~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g~a~~~L~~l~~~~~~~~  135 (227)
T d1susa1          58 INAKNTMEIG--VYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHG  135 (227)
T ss_dssp             HTCCEEEEEC--CGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCGGGTT
T ss_pred             cCCCcEEEec--chhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccccceeeeehHHHHHHHHHHhccccCC
Confidence            3457899997  567889999998752 468888888888776664    45654333221111    1111      34


Q ss_pred             CccEEE-ecCc-----cHHHHHHhcccCCeEEEE
Q 016265          296 KFDVVY-DAIG-----QCDRAVKAIKEGGTVVAL  323 (392)
Q Consensus       296 ~~D~vi-d~~G-----~~~~~~~~l~~~G~iv~~  323 (392)
                      .||.|| |+--     -++.+++.|++||.++.=
T Consensus       136 ~fD~iFiDa~k~~y~~~~e~~~~ll~~gGiii~D  169 (227)
T d1susa1         136 SYDFIFVDADKDNYLNYHKRLIDLVKVGGVIGYD  169 (227)
T ss_dssp             CBSEEEECSCSTTHHHHHHHHHHHBCTTCCEEEE
T ss_pred             ceeEEEeccchhhhHHHHHHHHhhcCCCcEEEEc
Confidence            699887 4432     258999999999998764

>d1z7wa1 c.79.1.1 (A:3-322) O-acetylserine sulfhydrylase (Cysteine synthase) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=88.14  E-value=2.3  Score=37.07  Aligned_cols=99  Identities=18%  Similarity=0.208  Sum_probs=68.4

Q ss_pred             HHHhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeC---CcccHHHHHhcCCcEEEeCCCCc-----------
Q 016265          224 GLERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATS---STRNLEFLKSLGADLAIDYTKDN-----------  289 (392)
Q Consensus       224 al~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~---~~~~~~~~~~~G~~~vi~~~~~~-----------  289 (392)
                      +.++..++.+...+|...+|..|++.+..|+.+ |.+.+++..   ++.|++.++.+|++.++......           
T Consensus        55 a~~~g~~~~~~~~vv~aSsGN~g~a~A~~a~~~-g~~~~iv~p~~~~~~k~~~i~~~Ga~vi~~~~~~~~~~~~~~~~~~  133 (320)
T d1z7wa1          55 AEKKGLIKPGESVLIEPTSGNTGVGLAFTAAAK-GYKLIITMPASMSTERRIILLAFGVELVLTDPAKGMKGAIAKAEEI  133 (320)
T ss_dssp             HHHTTSCCTTTCEEEEECSSHHHHHHHHHHHHH-TCEEEEEEETTSCHHHHHHHHHTTCEEEEECGGGHHHHHHHHHHHH
T ss_pred             HHHcCCCCCCCceEEeeCCchHHHHHHHHHHhh-ccceEEeehhhhhhhhhhhhhccCcceEEeeccccccccchhHHHH
Confidence            445566677766667667999999999999985 998887763   66788889999987654321110           


Q ss_pred             ------------------c------------ccCCCCccEEEecCcc------HHHHHHhcccCCeEEEE
Q 016265          290 ------------------F------------EDLPEKFDVVYDAIGQ------CDRAVKAIKEGGTVVAL  323 (392)
Q Consensus       290 ------------------~------------~~~~~~~D~vid~~G~------~~~~~~~l~~~G~iv~~  323 (392)
                                        +            .+..+.+|.++-++|+      +-..++...+.-+++.+
T Consensus       134 ~~~~~~~~~~~~~~~~~n~~~g~~t~~~EI~~q~~~~~D~vv~~vGgGg~~~Gi~~~~k~~~~~~~~igv  203 (320)
T d1z7wa1         134 LAKTPNGYMLQQFENPANPKIHYETTGPEIWKGTGGKIDGFVSGIGTGGTITGAGKYLKEQNANVKLYGV  203 (320)
T ss_dssp             HHHCTTEEECCTTTCTHHHHHHHHTHHHHHHHHTTTCCCEEEEECSSSHHHHHHHHHHHHHCTTCEEEEE
T ss_pred             HHhCCCceecccccccchHHHhhhhHHHHHHHhccCCCCEEEeCCCCCcccchhhhhhhhhhcceeeecc
Confidence                              0            0012358999999872      35666667777887765

>d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM1727
species: Thermotoga maritima [TaxId: 2336]

Probab=88.11  E-value=0.15  Score=39.70  Aligned_cols=83  Identities=16%  Similarity=0.173  Sum_probs=50.2

Q ss_pred             EEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCCccccCCCCccEEEecCc--cHHHHHHh
Q 016265          236 ILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFEDLPEKFDVVYDAIG--QCDRAVKA  313 (392)
Q Consensus       236 VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~~~~~~~D~vid~~G--~~~~~~~~  313 (392)
                      |-++| +|-+|.+.+...+. .+....+..++.++.+.+.+.+.....     +..+..+..|+||-|+.  .+....+.
T Consensus         2 IgfIG-~G~mg~~l~~~L~~-~~~~~~v~~R~~~~~~~l~~~~~~~~~-----~~~~~~~~~DiVil~v~d~~i~~v~~~   74 (153)
T d2i76a2           2 LNFVG-TGTLTRFFLECLKD-RYEIGYILSRSIDRARNLAEVYGGKAA-----TLEKHPELNGVVFVIVPDRYIKTVANH   74 (153)
T ss_dssp             CEEES-CCHHHHHHHHTTC-----CCCEECSSHHHHHHHHHHTCCCCC-----SSCCCCC---CEEECSCTTTHHHHHTT
T ss_pred             EEEEe-CcHHHHHHHHHHHh-CCCEEEEEeCChhhhcchhhccccccc-----chhhhhccCcEEEEeccchhhhHHHhh
Confidence            35677 99999887776654 232234667888888887766543322     23344567899999986  56777777


Q ss_pred             cccCCe-EEEEcC
Q 016265          314 IKEGGT-VVALTG  325 (392)
Q Consensus       314 l~~~G~-iv~~g~  325 (392)
                      ++..|+ ++.++.
T Consensus        75 l~~~~~ivi~~s~   87 (153)
T d2i76a2          75 LNLGDAVLVHCSG   87 (153)
T ss_dssp             TCCSSCCEEECCS
T ss_pred             hcccceeeeeccc
Confidence            765444 455544

>d1obfo1 c.2.1.3 (O:1-152,O:315-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Achromobacter xylosoxidans [TaxId: 85698]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Achromobacter xylosoxidans [TaxId: 85698]

Probab=88.10  E-value=2.2  Score=33.65  Aligned_cols=93  Identities=19%  Similarity=0.244  Sum_probs=55.0

Q ss_pred             eEEEEcCCCcHHHHHHHHHHHhc---CCeEEEEeC--CcccHHHHHhc----C---CcE-------EEeC------CCCc
Q 016265          235 SILVLNGSGGVGSLVIQLAKQVF---GASRVAATS--STRNLEFLKSL----G---ADL-------AIDY------TKDN  289 (392)
Q Consensus       235 ~VlI~Ga~G~vG~~aiqlak~~~---G~~vv~~~~--~~~~~~~~~~~----G---~~~-------vi~~------~~~~  289 (392)
                      +|.|.| -|-+|++....+-...   ..+++++-.  +.+.+.++-++    |   ...       +++.      ...+
T Consensus         3 kigING-fGRIGR~v~R~~~~~~~~~~~~vvaINd~~~~~~~ayLlkyDS~hG~~~~~v~~~~~~l~i~g~~i~i~~~~~   81 (173)
T d1obfo1           3 RVAING-YGRIGRNILRAHYEGGKSHDIEIVAINDLGDPKTNAHLTRYDTAHGKFPGTVSVNGSYMVVNGDKIRVDANRN   81 (173)
T ss_dssp             EEEEEC-CSHHHHHHHHHHHHTTSCSSEEEEEEECSSCHHHHHHHHHEETTTEECSSCEEEETTEEEETTEEEEEECCSC
T ss_pred             EEEEEC-CcHHHHHHHHHHHhCCCCCCeEEEEEcCCCChHHHHHhhcccccCCCcCceEEeccceEEECCEEEEEEecCC
Confidence            588998 9999999887764311   234444432  33334444332    1   111       1111      1111


Q ss_pred             cccC---CCCccEEEecCcc---HHHHHHhcccCCeEEEEcCCCC
Q 016265          290 FEDL---PEKFDVVYDAIGQ---CDRAVKAIKEGGTVVALTGAVT  328 (392)
Q Consensus       290 ~~~~---~~~~D~vid~~G~---~~~~~~~l~~~G~iv~~g~~~~  328 (392)
                      ..++   ..++|+|+||+|.   .+.+.+.|..|-+-|.++.+..
T Consensus        82 p~~i~W~~~gvDiViEcTG~f~~~~~a~~hl~~GakkViiSAP~~  126 (173)
T d1obfo1          82 PAQLPWGALKVDVVLECTGFFTTKEKAGAHIKGGAKKVIISAPGG  126 (173)
T ss_dssp             GGGSCTTTTTCSEEEECSSSCCSHHHHHHHHHHTCSEEEESSCCC
T ss_pred             HHHCcccccccceEEEecccccCHHHHHHHhccCCcceEEecCCC
Confidence            2222   2379999999993   5788889998988888876654

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=88.09  E-value=0.92  Score=34.86  Aligned_cols=69  Identities=20%  Similarity=0.178  Sum_probs=39.8

Q ss_pred             eEEEEcCCCcHHHHHHHHHHHhcCC--eEEEEeCCcccHHHHHhcC-CcEEE----eCCCCccccCCCCccEEEecCc
Q 016265          235 SILVLNGSGGVGSLVIQLAKQVFGA--SRVAATSSTRNLEFLKSLG-ADLAI----DYTKDNFEDLPEKFDVVYDAIG  305 (392)
Q Consensus       235 ~VlI~Ga~G~vG~~aiqlak~~~G~--~vv~~~~~~~~~~~~~~~G-~~~vi----~~~~~~~~~~~~~~D~vid~~G  305 (392)
                      +|.|+||+|.+|...+.++.. .+.  +++.++..+.+. .+.++- ++...    .....+..+..++.|+|+-+.|
T Consensus         2 Kv~IiGA~G~VG~~~A~~l~~-~~~~~elvLiDi~~~~~-~a~Dl~~~~~~~~~~~~~~~~~~~~~~~~aDivVitag   77 (144)
T d1mlda1           2 KVAVLGASGGIGQPLSLLLKN-SPLVSRLTLYDIAHTPG-VAADLSHIETRATVKGYLGPEQLPDCLKGCDVVVIPAG   77 (144)
T ss_dssp             EEEEETTTSTTHHHHHHHHHT-CTTCSEEEEEESSSHHH-HHHHHTTSSSSCEEEEEESGGGHHHHHTTCSEEEECCS
T ss_pred             eEEEECCCChHHHHHHHHHHh-CCccceEEEEeccccch-hhHHHhhhhhhcCCCeEEcCCChHHHhCCCCEEEECCC
Confidence            689999779999999888876 354  455566554433 233322 11100    1112222333467888887766

>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Hypothetical methyltransferase PH1374
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=87.92  E-value=1.8  Score=37.81  Aligned_cols=97  Identities=20%  Similarity=0.230  Sum_probs=60.6

Q ss_pred             hcCCCCCCeEEEEcCCCcHHHHHHHHHHHhc-CCeEEEEeCCcccHHHH----HhcCCcEEEeCCC--CccccCCCCccE
Q 016265          227 RTGFSAGKSILVLNGSGGVGSLVIQLAKQVF-GASRVAATSSTRNLEFL----KSLGADLAIDYTK--DNFEDLPEKFDV  299 (392)
Q Consensus       227 ~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~-G~~vv~~~~~~~~~~~~----~~~G~~~vi~~~~--~~~~~~~~~~D~  299 (392)
                      ...+++|++||=.. +++ |-=+.+++..+. ...+++.+.++.|+..+    +++|...++....  ..+......||.
T Consensus       111 ~l~~~~g~~vlD~C-Aap-GgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~~~i~~~~~d~~~~~~~~~~fD~  188 (313)
T d1ixka_         111 ALDPKPGEIVADMA-AAP-GGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEFDK  188 (313)
T ss_dssp             HHCCCTTCEEEECC-SSC-SHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCCEEE
T ss_pred             cccCCccceeeecc-cch-hhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHhhccccccccccccccccccccE
Confidence            44789999887654 333 333444554432 34678888888887665    5577655443322  223344567887


Q ss_pred             EE-e--cCcc----------------------------HHHHHHhcccCCeEEEEcC
Q 016265          300 VY-D--AIGQ----------------------------CDRAVKAIKEGGTVVALTG  325 (392)
Q Consensus       300 vi-d--~~G~----------------------------~~~~~~~l~~~G~iv~~g~  325 (392)
                      |+ |  |+|.                            +..+++++++||++|....
T Consensus       189 ILvDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsTC  245 (313)
T d1ixka_         189 ILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTC  245 (313)
T ss_dssp             EEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEES
T ss_pred             EEEccccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEeec
Confidence            76 3  4541                            3568889999999886644

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=87.61  E-value=1.8  Score=33.00  Aligned_cols=90  Identities=11%  Similarity=0.032  Sum_probs=56.4

Q ss_pred             CCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccH----HHHHhcCCcEEE-eCCCCc-ccc-CCCCccEEEecCc
Q 016265          233 GKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNL----EFLKSLGADLAI-DYTKDN-FED-LPEKFDVVYDAIG  305 (392)
Q Consensus       233 g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~----~~~~~~G~~~vi-~~~~~~-~~~-~~~~~D~vid~~G  305 (392)
                      -++++|.| .|.+|...++..+. .|.++++++..+++.    +.+...|...+. |..+.. +.+ ..+.+|.++-+++
T Consensus         3 knHiII~G-~g~~g~~l~~~L~~-~~~~v~vId~d~~~~~~~~~~~~~~~~~vi~Gd~~d~~~L~~a~i~~a~~vi~~~~   80 (153)
T d1id1a_           3 KDHFIVCG-HSILAINTILQLNQ-RGQNVTVISNLPEDDIKQLEQRLGDNADVIPGDSNDSSVLKKAGIDRCRAILALSD   80 (153)
T ss_dssp             CSCEEEEC-CSHHHHHHHHHHHH-TTCCEEEEECCCHHHHHHHHHHHCTTCEEEESCTTSHHHHHHHTTTTCSEEEECSS
T ss_pred             CCEEEEEC-CCHHHHHHHHHHHH-cCCCEEEEeccchhHHHHHHHhhcCCcEEEEccCcchHHHHHhccccCCEEEEccc
Confidence            36799998 89999999998887 599999988776542    223334554433 222222 222 2457899998887


Q ss_pred             c----H--HHHHHhcccCCeEEEEc
Q 016265          306 Q----C--DRAVKAIKEGGTVVALT  324 (392)
Q Consensus       306 ~----~--~~~~~~l~~~G~iv~~g  324 (392)
                      .    .  -...+-+.+.-+++...
T Consensus        81 ~d~~n~~~~~~~r~~~~~~~iia~~  105 (153)
T d1id1a_          81 NDADNAFVVLSAKDMSSDVKTVLAV  105 (153)
T ss_dssp             CHHHHHHHHHHHHHHTSSSCEEEEC
T ss_pred             cHHHHHHHHHHHHHhCCCCceEEEE
Confidence            3    1  23344455666666553

>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=87.35  E-value=0.39  Score=41.74  Aligned_cols=45  Identities=22%  Similarity=0.202  Sum_probs=33.9

Q ss_pred             CeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCc--ccHHHHHhcCC
Q 016265          234 KSILVLNGSGGVGSLVIQLAKQVFGASRVAATSST--RNLEFLKSLGA  279 (392)
Q Consensus       234 ~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~--~~~~~~~~~G~  279 (392)
                      .+|||+||+|-+|...+..+.. .|.+|+++++..  ...+.++.++.
T Consensus         1 k~vLItG~tGfiG~~l~~~Ll~-~g~~V~~~~r~~~~~~~~~l~~~~~   47 (321)
T d1rpna_           1 RSALVTGITGQDGAYLAKLLLE-KGYRVHGLVARRSSDTRWRLRELGI   47 (321)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHH-TTCEEEEEECCCSSCCCHHHHHTTC
T ss_pred             CEEEEECCCCHHHHHHHHHHHH-CcCEEEEEECCCCcccHHHHHHhcc
Confidence            4799999999999998887766 499999988633  23455555543

>d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glucose-fructose oxidoreductase, N-terminal domain
species: Zymomonas mobilis [TaxId: 542]

Probab=87.25  E-value=1.7  Score=35.69  Aligned_cols=86  Identities=20%  Similarity=0.281  Sum_probs=52.4

Q ss_pred             eEEEEcCCCcHHHH-HHHHHHHhcCCeEEEE-eCCcccHH-HHHhcCCc--EEEeCCCCccccC--CCCccEEEecCc--
Q 016265          235 SILVLNGSGGVGSL-VIQLAKQVFGASRVAA-TSSTRNLE-FLKSLGAD--LAIDYTKDNFEDL--PEKFDVVYDAIG--  305 (392)
Q Consensus       235 ~VlI~Ga~G~vG~~-aiqlak~~~G~~vv~~-~~~~~~~~-~~~~~G~~--~vi~~~~~~~~~~--~~~~D~vid~~G--  305 (392)
                      +|.|+| +|.+|.- .+...+...+.+++.+ ++++++.+ .++++|.+  .+..++  ++.++  ...+|+|+-|+.  
T Consensus        35 riaiIG-~G~~~~~~~~~~~~~~~~~~ivav~d~~~~~a~~~~~~~~i~~~~~~~~~--d~~ell~~~~iD~V~I~tp~~  111 (221)
T d1h6da1          35 GYAIVG-LGKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAAEYGVDPRKIYDYS--NFDKIAKDPKIDAVYIILPNS  111 (221)
T ss_dssp             EEEEEC-CSHHHHHTHHHHTTTCSSEEEEEEECSCHHHHHHHHHHTTCCGGGEECSS--SGGGGGGCTTCCEEEECSCGG
T ss_pred             EEEEEc-CcHHHHHHHHHHHHhCCCceEEEEecCCHHHHHHHHHhhccccccccccC--chhhhcccccceeeeeccchh
Confidence            689998 8999863 4444333346777755 45666654 44677753  233332  23332  347899999987  


Q ss_pred             -cHHHHHHhcccCCeEEEEc
Q 016265          306 -QCDRAVKAIKEGGTVVALT  324 (392)
Q Consensus       306 -~~~~~~~~l~~~G~iv~~g  324 (392)
                       +.+.+.+++..| +=|.+.
T Consensus       112 ~H~~~~~~al~~g-k~v~~E  130 (221)
T d1h6da1         112 LHAEFAIRAFKAG-KHVMCE  130 (221)
T ss_dssp             GHHHHHHHHHHTT-CEEEEC
T ss_pred             hhhhHHHHhhhcc-hhhhcC
Confidence             357777777664 544553

>d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Diaminopimelic acid dehydrogenase (DAPDH)
species: Corynebacterium glutamicum [TaxId: 1718]

Probab=87.23  E-value=0.37  Score=38.22  Aligned_cols=80  Identities=14%  Similarity=0.169  Sum_probs=51.5

Q ss_pred             eEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeC-CcccHHHHHhcCCcEEEeCCCCccccCCCCccEEEecCc---cHHHH
Q 016265          235 SILVLNGSGGVGSLVIQLAKQVFGASRVAATS-STRNLEFLKSLGADLAIDYTKDNFEDLPEKFDVVYDAIG---QCDRA  310 (392)
Q Consensus       235 ~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~-~~~~~~~~~~~G~~~vi~~~~~~~~~~~~~~D~vid~~G---~~~~~  310 (392)
                      +|.|+| .|.+|...+...+...+.+++.+.. ++++..      ...+..+  .+.......+|+|+.|++   ..+.+
T Consensus         5 rvgiiG-~G~ig~~~~~~l~~~~~~elvav~~~~~~~~~------~~~~~~~--~~~~~~~~~~D~Vvi~tp~~~h~~~a   75 (170)
T d1f06a1           5 RVAIVG-YGNLGRSVEKLIAKQPDMDLVGIFSRRATLDT------KTPVFDV--ADVDKHADDVDVLFLCMGSATDIPEQ   75 (170)
T ss_dssp             EEEEEC-CSHHHHHHHHHHTTCSSEEEEEEEESSSCCSS------SSCEEEG--GGGGGTTTTCSEEEECSCTTTHHHHH
T ss_pred             eEEEEC-ChHHHHHHHHHHHhCCCcEEEEEEeccccccc------ccccccc--hhhhhhccccceEEEeCCCcccHHHH
Confidence            589998 9999998877776644566665543 433211      1122222  123334557999999987   35888


Q ss_pred             HHhcccCCeEEEE
Q 016265          311 VKAIKEGGTVVAL  323 (392)
Q Consensus       311 ~~~l~~~G~iv~~  323 (392)
                      .++|..|-.+|..
T Consensus        76 ~~aL~aG~~vv~~   88 (170)
T d1f06a1          76 APKFAQFACTVDT   88 (170)
T ss_dssp             HHHHTTTSEEECC
T ss_pred             HHHHHCCCcEEEe
Confidence            8889888776643

>d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0312
species: Thermotoga maritima [TaxId: 2336]

Probab=87.21  E-value=4  Score=31.97  Aligned_cols=85  Identities=18%  Similarity=0.167  Sum_probs=51.9

Q ss_pred             eEEEEcCCCcHHHH-HHHHHHHhcC-CeEEEE-eCCcccHHH-HHhcCCcEEEeCCCCccccC--CCCccEEEecCc---
Q 016265          235 SILVLNGSGGVGSL-VIQLAKQVFG-ASRVAA-TSSTRNLEF-LKSLGADLAIDYTKDNFEDL--PEKFDVVYDAIG---  305 (392)
Q Consensus       235 ~VlI~Ga~G~vG~~-aiqlak~~~G-~~vv~~-~~~~~~~~~-~~~~G~~~vi~~~~~~~~~~--~~~~D~vid~~G---  305 (392)
                      +|.|+| +|.+|.- .+...+...+ .+++.+ +++.++.+. .+++|...+++    ++.++  ...+|+|+-|+.   
T Consensus         5 rigiIG-~G~~g~~~h~~~l~~~~~~~~i~~v~d~~~~~~~~~~~~~~~~~~~~----~~~ell~~~~id~v~I~tp~~~   79 (181)
T d1zh8a1           5 RLGIVG-CGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMVGNPAVFD----SYEELLESGLVDAVDLTLPVEL   79 (181)
T ss_dssp             EEEEEC-CSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHHHSSCEEES----CHHHHHHSSCCSEEEECCCGGG
T ss_pred             EEEEEc-CCHHHHHHHHHHHHhCCCCeEEEEEEeccHhhhhhhhccccccceee----eeeccccccccceeeccccccc
Confidence            588998 8999964 4555554323 355544 456666554 45778665553    23332  346899998886   


Q ss_pred             cHHHHHHhcccCCeEEEEcC
Q 016265          306 QCDRAVKAIKEGGTVVALTG  325 (392)
Q Consensus       306 ~~~~~~~~l~~~G~iv~~g~  325 (392)
                      +.+.+..++..| +=|.+.-
T Consensus        80 h~~~~~~al~~g-k~V~~EK   98 (181)
T d1zh8a1          80 NLPFIEKALRKG-VHVICEK   98 (181)
T ss_dssp             HHHHHHHHHHTT-CEEEEES
T ss_pred             cccccccccccc-hhhhcCC
Confidence            346666666664 5555543

>d1hdgo1 c.2.1.3 (O:1-148,O:313-331) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Thermotoga maritima [TaxId: 2336]

Probab=87.17  E-value=1.3  Score=34.94  Aligned_cols=95  Identities=20%  Similarity=0.284  Sum_probs=56.5

Q ss_pred             eEEEEcCCCcHHHHHHHHHHHhc--CCeEEEEeC--CcccHHHHHhc----C---CcE-------EEeC------CCCcc
Q 016265          235 SILVLNGSGGVGSLVIQLAKQVF--GASRVAATS--STRNLEFLKSL----G---ADL-------AIDY------TKDNF  290 (392)
Q Consensus       235 ~VlI~Ga~G~vG~~aiqlak~~~--G~~vv~~~~--~~~~~~~~~~~----G---~~~-------vi~~------~~~~~  290 (392)
                      +|.|.| -|-+|+++...+....  ..+++.+-.  +.+.+.++-++    |   .+.       +++.      ...+.
T Consensus         2 kIgING-fGRIGR~v~R~~~~~~~~~i~vvaINd~~~~e~~ayLlkyDS~hG~~~~~v~~~~~~l~ing~~I~~~~~~~p   80 (169)
T d1hdgo1           2 RVAING-FGRIGRLVYRIIYERKNPDIEVVAINDLTDTKTLAHLLKYDSVHKKFPGKVEYTENSLIVDGKEIKVFAEPDP   80 (169)
T ss_dssp             EEEEEC-CSHHHHHHHHHHHHHTCTTCEEEEEECSSCHHHHHHHHHCCTTTCCCSSCEEECSSEEEETTEEEEEECCSSG
T ss_pred             EEEEEC-CChHHHHHHHHHHhccCCCEEEEEeccCccHHHHHHHHhccccccccCceEEEECCEEEECCEEEEEEeCCCh
Confidence            688998 9999999998775422  356666533  33444444332    2   111       1111      01111


Q ss_pred             ccCC---CCccEEEecCcc---HHHHHHhcccCCeEEEEcCCCCCC
Q 016265          291 EDLP---EKFDVVYDAIGQ---CDRAVKAIKEGGTVVALTGAVTPP  330 (392)
Q Consensus       291 ~~~~---~~~D~vid~~G~---~~~~~~~l~~~G~iv~~g~~~~~~  330 (392)
                      .++.   .++|+||||+|.   .+.+...+..|-+-|.++.+....
T Consensus        81 ~~i~W~~~gvD~ViEcTG~f~t~~~~~~hl~~GakkViiSAP~kd~  126 (169)
T d1hdgo1          81 SKLPWKDLGVDFVIESTGVFRNREKAELHLQAGAKKVIITAPAKGE  126 (169)
T ss_dssp             GGSCHHHHTCCEEEECSSSCCBHHHHTHHHHTTCSEEEESSCCBSC
T ss_pred             hhCCccccCCCEEEEecceeccccchhhhccCCCceEEEecccCCC
Confidence            1221   279999999993   577778888887777777665433

>d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Polymyxin resistance protein ArnA (PrmI)
species: Escherichia coli [TaxId: 562]

Probab=86.48  E-value=0.33  Score=42.78  Aligned_cols=70  Identities=13%  Similarity=0.130  Sum_probs=41.5

Q ss_pred             eEEEEcCCCcHHHHHHHHHHHhcC-CeEEEEeCCcccHHHHHh-cCCcEEE-eCCC-Ccccc-CCCCccEEEecCc
Q 016265          235 SILVLNGSGGVGSLVIQLAKQVFG-ASRVAATSSTRNLEFLKS-LGADLAI-DYTK-DNFED-LPEKFDVVYDAIG  305 (392)
Q Consensus       235 ~VlI~Ga~G~vG~~aiqlak~~~G-~~vv~~~~~~~~~~~~~~-~G~~~vi-~~~~-~~~~~-~~~~~D~vid~~G  305 (392)
                      +|||+||+|-+|...++.+.. .| .+|++++....+...+.. .....+. |-.. ..+.+ ...++|+||.+.+
T Consensus         2 KILITG~tGfiG~~l~~~Ll~-~g~~~V~~ld~~~~~~~~~~~~~~~~~i~~Di~~~~~~~~~~~~~~d~Vih~a~   76 (342)
T d2blla1           2 RVLILGVNGFIGNHLTERLLR-EDHYEVYGLDIGSDAISRFLNHPHFHFVEGDISIHSEWIEYHVKKCDVVLPLVA   76 (342)
T ss_dssp             EEEEETCSSHHHHHHHHHHHH-STTCEEEEEESCCGGGGGGTTCTTEEEEECCTTTCSHHHHHHHHHCSEEEECBC
T ss_pred             EEEEECCCcHHHHHHHHHHHH-CCCCEEEEEeCCCcchhhhccCCCeEEEECccCChHHHHHHHHhCCCccccccc
Confidence            699999999999988876655 36 578887765444333322 1222221 2111 12222 3347999999865

>d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein PA4017
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=86.29  E-value=0.2  Score=41.02  Aligned_cols=63  Identities=14%  Similarity=0.210  Sum_probs=37.7

Q ss_pred             CeEEEEcCCCcHHHHHHHHHHHhcCC--eEEEEeCCcccHHHHHhcCCcEEEeCCCCc----cccCCCCccEEEecCc
Q 016265          234 KSILVLNGSGGVGSLVIQLAKQVFGA--SRVAATSSTRNLEFLKSLGADLAIDYTKDN----FEDLPEKFDVVYDAIG  305 (392)
Q Consensus       234 ~~VlI~Ga~G~vG~~aiqlak~~~G~--~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~----~~~~~~~~D~vid~~G  305 (392)
                      ++|||+||+|-+|...+..+.. .|.  ++++..+++...        ..-+.....+    .......+|.||.|.|
T Consensus         3 KkIlItGatG~iG~~lv~~L~~-~~~~~~v~~~~r~~~~~--------~~~~~~~~~d~~~~~~~~~~~~d~vi~~~g   71 (212)
T d2a35a1           3 KRVLLAGATGLTGEHLLDRILS-EPTLAKVIAPARKALAE--------HPRLDNPVGPLAELLPQLDGSIDTAFCCLG   71 (212)
T ss_dssp             CEEEEECTTSHHHHHHHHHHHH-CTTCCEEECCBSSCCCC--------CTTEECCBSCHHHHGGGCCSCCSEEEECCC
T ss_pred             CEEEEECCCcHHHHHHHHHHHh-CCCeEEEEEEeCCchhh--------cccccccccchhhhhhccccchheeeeeee
Confidence            6899999999999999987766 365  444444432110        0001111111    2233456899999987

>d1tdja1 c.79.1.1 (A:5-335) Threonine deaminase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Threonine deaminase
species: Escherichia coli [TaxId: 562]

Probab=86.20  E-value=1  Score=39.60  Aligned_cols=101  Identities=12%  Similarity=0.208  Sum_probs=66.6

Q ss_pred             HHHHHHhcC-CCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeC---CcccHHHHHhcCCcEEEeCCCCcc-c----
Q 016265          221 AYEGLERTG-FSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATS---STRNLEFLKSLGADLAIDYTKDNF-E----  291 (392)
Q Consensus       221 a~~al~~~~-~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~---~~~~~~~~~~~G~~~vi~~~~~~~-~----  291 (392)
                      |++.+..+. -.++.+|+... +|..|.+.+..++. .|.+++++..   +..|.+.++.+|++.++.....+. .    
T Consensus        62 a~~~i~~~~~~~~~~~vv~as-sGN~g~a~A~~a~~-~g~~~~i~~p~~~~~~k~~~l~~~Ga~vi~~~~~~~~~~~~~~  139 (331)
T d1tdja1          62 AYAMMAGLTEEQKAHGVITAS-AGNHAQGVAFSSAR-LGVKALIVMPTATADIKVDAVRGFGGEVLLHGANFDEAKAKAI  139 (331)
T ss_dssp             HHHHHHTTTTSSCSSSCEEEE-CSSSHHHHHHHHHH-TTCCEEEECCSSCCHHHHHHHHHHSCEEECCCSSHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCeeeecc-cchhHHHHHHhhcc-ccccceeeccccchhHHHHHHHhcCCEEEEcCcccccchhhhh
Confidence            444554432 23445566654 89999999999998 5998888764   666888899999976543221100 0    


Q ss_pred             -------------------------------cCCCCccEEEecCcc------HHHHHHhcccCCeEEEE
Q 016265          292 -------------------------------DLPEKFDVVYDAIGQ------CDRAVKAIKEGGTVVAL  323 (392)
Q Consensus       292 -------------------------------~~~~~~D~vid~~G~------~~~~~~~l~~~G~iv~~  323 (392)
                                                     +....+|.+|-++|+      +...++.+.+.-+++.+
T Consensus       140 ~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~q~~~~D~vv~~~G~GG~~aG~~~~~~~~~~~~~ii~v  208 (331)
T d1tdja1         140 ELSQQQGFTWVPPFDHPMVIAGQGTLALELLQQDAHLDRVFVPVGGGGLAAGVAVLIKQLMPQIKVIAV  208 (331)
T ss_dssp             HHHHHHCCEECCSSCCHHHHHHHHHHHHHHHHHCTTCCEEEEECSSSHHHHHHHHHHHHHCTTCEEEEE
T ss_pred             hhhhcCCCccccccCChHHhhhhhhHHHHHHHhcCCCCEEEEeCChhHHHHHHHHHHHHhCCCcEEEEe
Confidence                                           002358999999872      35666777788888876

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=86.07  E-value=0.37  Score=38.87  Aligned_cols=39  Identities=18%  Similarity=0.160  Sum_probs=31.7

Q ss_pred             CeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHH
Q 016265          234 KSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFL  274 (392)
Q Consensus       234 ~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~  274 (392)
                      ++|.|+| +|.+|...++++.. .|.+|++.+.+++.++.+
T Consensus         5 ~~vaViG-aG~mG~~iA~~~a~-~G~~V~l~D~~~~~l~~~   43 (186)
T d1wdka3           5 KQAAVLG-AGIMGGGIAYQSAS-KGTPILMKDINEHGIEQG   43 (186)
T ss_dssp             SSEEEEC-CHHHHHHHHHHHHH-TTCCEEEECSSHHHHHHH
T ss_pred             CEEEEEC-cCHHHHHHHHHHHh-CCCeEEEEECCHHHHhhh
Confidence            5799998 89999987766656 599999999988766544

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=86.07  E-value=0.46  Score=41.98  Aligned_cols=72  Identities=22%  Similarity=0.270  Sum_probs=45.6

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccH--HHHHhc-CCcEEE-eCCC-Cc-cccCCCCccEEEecC
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNL--EFLKSL-GADLAI-DYTK-DN-FEDLPEKFDVVYDAI  304 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~--~~~~~~-G~~~vi-~~~~-~~-~~~~~~~~D~vid~~  304 (392)
                      ..++|+|+||+|.+|...+..+.. .|.+|++++++..+.  ..+... |++.+. |..+ .+ +.....++|+++...
T Consensus         2 ~kktIlVtGatG~iG~~lv~~Ll~-~G~~V~~l~R~~~~~~~~~~~~~~~v~~~~gD~~d~~~~~~~a~~~~~~~~~~~   79 (350)
T d1xgka_           2 QKKTIAVVGATGRQGASLIRVAAA-VGHHVRAQVHSLKGLIAEELQAIPNVTLFQGPLLNNVPLMDTLFEGAHLAFINT   79 (350)
T ss_dssp             CCCCEEEESTTSHHHHHHHHHHHH-TTCCEEEEESCSCSHHHHHHHTSTTEEEEESCCTTCHHHHHHHHTTCSEEEECC
T ss_pred             CCCEEEEECCChHHHHHHHHHHHh-CCCeEEEEECCcchhhhhhhcccCCCEEEEeeCCCcHHHHHHHhcCCceEEeec
Confidence            457899999999999998888877 499999999866543  233333 333222 2222 11 222335677776553

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=85.94  E-value=2.6  Score=32.20  Aligned_cols=69  Identities=23%  Similarity=0.214  Sum_probs=37.3

Q ss_pred             eEEEEcCCCcHHHHHHHHHH-Hh-cCCeEEEEeCCcccHHHHHhc---CC---cEEEeCCCCccccCCCCccEEEecCc
Q 016265          235 SILVLNGSGGVGSLVIQLAK-QV-FGASRVAATSSTRNLEFLKSL---GA---DLAIDYTKDNFEDLPEKFDVVYDAIG  305 (392)
Q Consensus       235 ~VlI~Ga~G~vG~~aiqlak-~~-~G~~vv~~~~~~~~~~~~~~~---G~---~~vi~~~~~~~~~~~~~~D~vid~~G  305 (392)
                      +|.|+|++|.+|...+.+.+ .. .+.+++..+..+.....+.++   ..   ...+ ....+.+ ...+.|+|+-+.|
T Consensus         2 KV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~~~~g~a~Dl~h~~~~~~~~~~-~~~~~~~-~~~~aDvvvitaG   78 (145)
T d2cmda1           2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGF-SGEDATP-ALEGADVVLISAG   78 (145)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSSTTHHHHHHHHHTSCSSCEEEEE-CSSCCHH-HHTTCSEEEECCS
T ss_pred             EEEEEcCCChHHHHHHHHHHhCCCCCcEEEEecccccchhHHHHHHCCccccCCcEE-EcCCCcc-ccCCCCEEEECCC
Confidence            58899988999987776543 31 134566666544332333332   11   1111 1122222 2347899988877

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=85.48  E-value=0.52  Score=40.53  Aligned_cols=37  Identities=16%  Similarity=0.190  Sum_probs=30.1

Q ss_pred             CCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCc
Q 016265          230 FSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSST  268 (392)
Q Consensus       230 ~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~  268 (392)
                      .....+|+|+| +|..|+.++..+... |.+|++++.++
T Consensus        27 ~~~pkkV~IIG-aG~aGLsaA~~L~~~-G~~V~vlE~~~   63 (370)
T d2iida1          27 TSNPKHVVIVG-AGMAGLSAAYVLAGA-GHQVTVLEASE   63 (370)
T ss_dssp             CSSCCEEEEEC-CBHHHHHHHHHHHHH-TCEEEEECSSS
T ss_pred             CCCCCeEEEEC-CCHHHHHHHHHHHHC-CCCEEEEeCCC
Confidence            34456899998 999999988887774 99999998653

>d1rm4a1 c.2.1.3 (A:1-148,A:313-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=85.39  E-value=1.3  Score=35.02  Aligned_cols=92  Identities=22%  Similarity=0.278  Sum_probs=52.7

Q ss_pred             eEEEEcCCCcHHHHHHHHHHHhcC--CeEEEEeC--CcccHHHHHhc----C---CcE--------EEeCC------CCc
Q 016265          235 SILVLNGSGGVGSLVIQLAKQVFG--ASRVAATS--STRNLEFLKSL----G---ADL--------AIDYT------KDN  289 (392)
Q Consensus       235 ~VlI~Ga~G~vG~~aiqlak~~~G--~~vv~~~~--~~~~~~~~~~~----G---~~~--------vi~~~------~~~  289 (392)
                      +|.|.| -|-+|.++...+.....  .+++++-.  +.+.+.++-++    |   .+.        ++|..      ..+
T Consensus         2 kIgING-fGRIGR~v~R~~~~~~~~~i~ivaINd~~~~~~~ayLlkyDSvhG~~~~~i~~~~~~~~~ing~~I~~~~~~~   80 (172)
T d1rm4a1           2 KVAING-FGRIGRNFLRCWHGRKDSPLDVVVINDTGGVKQASHLLKYDSILGTFDADVKTAGDSAISVDGKVIKVVSDRN   80 (172)
T ss_dssp             EEEEEC-CSHHHHHHHHHHHHCSSCSEEEEEEECTTCHHHHHHHHHCCTTTCSCSSCEEECTTSEEEETTEEEEEECCSC
T ss_pred             EEEEEC-CCHHHHHHHHHHHhCCCCCEEEEEEcCCCCHHHHHHHHhcCcccccccceeEecCCcceEECCEEEEEecCCC
Confidence            588998 99999999987654323  34554432  22334444332    2   111        11110      011


Q ss_pred             cccCC---CCccEEEecCcc---HHHHHHhcccCCeEEEEcCCC
Q 016265          290 FEDLP---EKFDVVYDAIGQ---CDRAVKAIKEGGTVVALTGAV  327 (392)
Q Consensus       290 ~~~~~---~~~D~vid~~G~---~~~~~~~l~~~G~iv~~g~~~  327 (392)
                      ..++.   .++|+|+||+|.   .+.+...+..|-+-|.++.+.
T Consensus        81 p~~i~W~~~gvDiViEcTG~f~~~~~~~~hl~~GakkViiSAP~  124 (172)
T d1rm4a1          81 PVNLPWGDMGIDLVIEGTGVFVDRDGAGKHLQAGAKKVLITAPG  124 (172)
T ss_dssp             GGGSCHHHHTCCEEEECSSSCCBHHHHHHHHHTTCSCEEESSCC
T ss_pred             hHHCChhhcCCCEEEecCceEccHHHHHHHHhcCCceEEeeccc
Confidence            11111   279999999994   577777888887666776554

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=85.37  E-value=0.5  Score=39.25  Aligned_cols=36  Identities=17%  Similarity=0.257  Sum_probs=30.6

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCc
Q 016265          231 SAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSST  268 (392)
Q Consensus       231 ~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~  268 (392)
                      +.+++|+|+| +|+.|+.++..++. .|.++.++..++
T Consensus        47 ~~~k~VvIIG-aGpAGl~aA~~l~~-~G~~v~l~E~~~   82 (233)
T d1djqa3          47 KNKDSVLIVG-AGPSGSEAARVLME-SGYTVHLTDTAE   82 (233)
T ss_dssp             SSCCEEEEEC-CSHHHHHHHHHHHH-TTCEEEEECSSS
T ss_pred             cCCceEEEEc-ccHHHHHHHHHHHH-hccceeeEeecc
Confidence            4678999998 99999999998877 499999998644

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=85.24  E-value=1.1  Score=36.00  Aligned_cols=86  Identities=19%  Similarity=0.266  Sum_probs=56.7

Q ss_pred             CCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEEeCCCCccccCCCCccEEEecCc----
Q 016265          230 FSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAIDYTKDNFEDLPEKFDVVYDAIG----  305 (392)
Q Consensus       230 ~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi~~~~~~~~~~~~~~D~vid~~G----  305 (392)
                      +.++++||=+| +| .|..+..+      .+++.++.++.-++.+++.+... +..+..+.....+.||+|+..--    
T Consensus        34 ~~~~~~vLDiG-cG-~G~~~~~~------~~~~giD~s~~~~~~a~~~~~~~-~~~d~~~l~~~~~~fD~I~~~~~l~h~  104 (208)
T d1vlma_          34 LLPEGRGVEIG-VG-TGRFAVPL------KIKIGVEPSERMAEIARKRGVFV-LKGTAENLPLKDESFDFALMVTTICFV  104 (208)
T ss_dssp             HCCSSCEEEET-CT-TSTTHHHH------TCCEEEESCHHHHHHHHHTTCEE-EECBTTBCCSCTTCEEEEEEESCGGGS
T ss_pred             hCCCCeEEEEC-CC-Cccccccc------ceEEEEeCChhhccccccccccc-ccccccccccccccccccccccccccc
Confidence            35677899997 44 35544333      34678899999999998876543 33332333223457999986532    


Q ss_pred             -----cHHHHHHhcccCCeEEEEc
Q 016265          306 -----QCDRAVKAIKEGGTVVALT  324 (392)
Q Consensus       306 -----~~~~~~~~l~~~G~iv~~g  324 (392)
                           .+..+.++|+|||+++...
T Consensus       105 ~d~~~~l~~~~~~L~pgG~l~i~~  128 (208)
T d1vlma_         105 DDPERALKEAYRILKKGGYLIVGI  128 (208)
T ss_dssp             SCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cccccchhhhhhcCCCCceEEEEe
Confidence                 1478889999999987653

>d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative semialdehyde dehydrogenase
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=85.17  E-value=1  Score=35.98  Aligned_cols=89  Identities=18%  Similarity=0.182  Sum_probs=50.2

Q ss_pred             eEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcc---cHHHHH-hc-CCcEEEeCCCCccccCCCCccEEEecCcc--H
Q 016265          235 SILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTR---NLEFLK-SL-GADLAIDYTKDNFEDLPEKFDVVYDAIGQ--C  307 (392)
Q Consensus       235 ~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~---~~~~~~-~~-G~~~vi~~~~~~~~~~~~~~D~vid~~G~--~  307 (392)
                      +|.|+||+|-+|+-.++++...-..++..+.+...   +..... .+ +.+...  ..........++|++|-|.++  .
T Consensus         7 kVaIlGATGyvG~elirLL~~HP~~ei~~l~S~~~aG~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~Dvvf~alp~~~s   84 (183)
T d2cvoa1           7 RIAVLGASGYTGAEIVRLLANHPQFRIKVMTADRKAGEQFGSVFPHLITQDLPN--LVAVKDADFSNVDAVFCCLPHGTT   84 (183)
T ss_dssp             EEEEESCSSHHHHHHHHHHTTCSSEEEEEEECSTTTTSCHHHHCGGGTTSCCCC--CBCGGGCCGGGCSEEEECCSSSHH
T ss_pred             EEEEECcccHHHHHHHHHHHhCCCceEEEEeccccCCCcccccccccccccccc--chhhhhhhhcccceeeeccccchH
Confidence            58999999999999999987632234444432211   222221 11 111000  000111223478999999873  3


Q ss_pred             HHHHHhcccCCeEEEEcC
Q 016265          308 DRAVKAIKEGGTVVALTG  325 (392)
Q Consensus       308 ~~~~~~l~~~G~iv~~g~  325 (392)
                      ......+...|.++....
T Consensus        85 ~~~~~~l~~~~~~v~~~~  102 (183)
T d2cvoa1          85 QEIIKGLPQELKIVDLSA  102 (183)
T ss_dssp             HHHHHTSCSSCEEEECSS
T ss_pred             HHHHHHHHhcCcccccch
Confidence            455567888888876654

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=85.10  E-value=0.39  Score=40.86  Aligned_cols=35  Identities=17%  Similarity=0.334  Sum_probs=29.8

Q ss_pred             CeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcc
Q 016265          234 KSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTR  269 (392)
Q Consensus       234 ~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~  269 (392)
                      .+|||+||+|-+|...+..+.. .|.+|++++++..
T Consensus         4 kKILVtGatG~iG~~l~~~L~~-~G~~V~~l~R~~~   38 (307)
T d1qyca_           4 SRILLIGATGYIGRHVAKASLD-LGHPTFLLVREST   38 (307)
T ss_dssp             CCEEEESTTSTTHHHHHHHHHH-TTCCEEEECCCCC
T ss_pred             CEEEEECCCcHHHHHHHHHHHH-CCCeEEEEECCCc
Confidence            5799999999999998888877 4999999987543

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=84.90  E-value=0.38  Score=38.98  Aligned_cols=79  Identities=8%  Similarity=0.109  Sum_probs=49.8

Q ss_pred             CeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCc------EEEeCC---CCccccCCCCccEEEecC
Q 016265          234 KSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGAD------LAIDYT---KDNFEDLPEKFDVVYDAI  304 (392)
Q Consensus       234 ~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~------~vi~~~---~~~~~~~~~~~D~vid~~  304 (392)
                      .+|.|+| +|..|.+.+.++.. .|.+|.+..++++..+.+.+.+..      ..+...   ..++.+..++.|++|-++
T Consensus         8 ~KI~ViG-aG~wGtAlA~~La~-~g~~V~l~~r~~~~~~~i~~~~~n~~yl~~~~l~~~i~~t~~l~~a~~~ad~iiiav   85 (189)
T d1n1ea2           8 NKAVVFG-SGAFGTALAMVLSK-KCREVCVWHMNEEEVRLVNEKRENVLFLKGVQLASNITFTSDVEKAYNGAEIILFVI   85 (189)
T ss_dssp             EEEEEEC-CSHHHHHHHHHHHT-TEEEEEEECSCHHHHHHHHHHTBCTTTSTTCBCCTTEEEESCHHHHHTTCSCEEECS
T ss_pred             ceEEEEC-CCHHHHHHHHHHHH-cCCeEEEEEecHHHHHHHhhcccccccccccccccccccchhhhhccCCCCEEEEcC
Confidence            3699998 99999998877755 477888888888887777543311      111000   012233345789999998


Q ss_pred             cc--HHHHHHhc
Q 016265          305 GQ--CDRAVKAI  314 (392)
Q Consensus       305 G~--~~~~~~~l  314 (392)
                      .+  +...++.+
T Consensus        86 Ps~~~~~~~~~~   97 (189)
T d1n1ea2          86 PTQFLRGFFEKS   97 (189)
T ss_dssp             CHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHH
Confidence            73  44444443

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=84.70  E-value=0.39  Score=42.29  Aligned_cols=90  Identities=21%  Similarity=0.278  Sum_probs=54.6

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcC------C-----cEEEeCCCCcc-ccCCCCccE
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLG------A-----DLAIDYTKDNF-EDLPEKFDV  299 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G------~-----~~vi~~~~~~~-~~~~~~~D~  299 (392)
                      ..++|||+|+  |.|..+-+++++-...++.++..+++=.+.++++-      +     -.++..+...+ .+..+.+|+
T Consensus        77 ~pk~VLiiG~--G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDv  154 (312)
T d1uira_          77 EPKRVLIVGG--GEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDV  154 (312)
T ss_dssp             CCCEEEEEEC--TTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEE
T ss_pred             CcceEEEeCC--CchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhcCCcccE
Confidence            4578999983  34666667776522357788888887777776531      1     01221111111 223567999


Q ss_pred             EE-ec---Cc------c------HHHHHHhcccCCeEEEE
Q 016265          300 VY-DA---IG------Q------CDRAVKAIKEGGTVVAL  323 (392)
Q Consensus       300 vi-d~---~G------~------~~~~~~~l~~~G~iv~~  323 (392)
                      || |.   .+      .      ++.+.++|+++|.++.-
T Consensus       155 Ii~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~  194 (312)
T d1uira_         155 VIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQ  194 (312)
T ss_dssp             EEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEE
T ss_pred             EEEeCCCcccccchhhhhhhHHHHHHHHHhcCCCceEEEe
Confidence            87 33   22      0      36788999999998764

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=84.64  E-value=0.57  Score=40.79  Aligned_cols=90  Identities=21%  Similarity=0.306  Sum_probs=54.1

Q ss_pred             CCeEEEEcCCCcHHHHHHHHHHHhcC-CeEEEEeCCcccHHHHHhcCC-------c---EEEeCCCCcc-ccCCCCccEE
Q 016265          233 GKSILVLNGSGGVGSLVIQLAKQVFG-ASRVAATSSTRNLEFLKSLGA-------D---LAIDYTKDNF-EDLPEKFDVV  300 (392)
Q Consensus       233 g~~VlI~Ga~G~vG~~aiqlak~~~G-~~vv~~~~~~~~~~~~~~~G~-------~---~vi~~~~~~~-~~~~~~~D~v  300 (392)
                      -++|||+|++  -|..+-.++++ .+ .++.+++..++=.+.++++-.       +   .++..+...+ .+..+.+|+|
T Consensus        90 pk~VLiiGgG--~G~~~r~~l~~-~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI  166 (295)
T d1inla_          90 PKKVLIIGGG--DGGTLREVLKH-DSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVI  166 (295)
T ss_dssp             CCEEEEEECT--TCHHHHHHTTS-TTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEE
T ss_pred             CceEEEecCC--chHHHHHHHhc-CCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhcCCCCCCEE
Confidence            4799999843  34556667776 34 467777778777777766421       0   1221111111 2234579988


Q ss_pred             E-ecC----cc---------HHHHHHhcccCCeEEEEcC
Q 016265          301 Y-DAI----GQ---------CDRAVKAIKEGGTVVALTG  325 (392)
Q Consensus       301 i-d~~----G~---------~~~~~~~l~~~G~iv~~g~  325 (392)
                      | |+.    +.         ++.+.++|+++|.++.-..
T Consensus       167 i~D~~dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v~q~~  205 (295)
T d1inla_         167 IIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETE  205 (295)
T ss_dssp             EEEC----------CCSHHHHHHHHHHEEEEEEEEEECC
T ss_pred             EEcCCCCCcCchhhhccHHHHHHHHhhcCCCcEEEEecC
Confidence            8 332    11         4688899999999987644

>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sulfolipid biosynthesis protein SQD1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=84.59  E-value=0.46  Score=42.74  Aligned_cols=32  Identities=16%  Similarity=0.203  Sum_probs=27.4

Q ss_pred             CCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEe
Q 016265          233 GKSILVLNGSGGVGSLVIQLAKQVFGASRVAAT  265 (392)
Q Consensus       233 g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~  265 (392)
                      |.+|||+||+|-+|...+..+.. .|.+|++++
T Consensus         1 g~kILVTGatGfiG~~lv~~Ll~-~g~~V~~iD   32 (393)
T d1i24a_           1 GSRVMVIGGDGYCGWATALHLSK-KNYEVCIVD   32 (393)
T ss_dssp             -CEEEEETTTSHHHHHHHHHHHH-TTCEEEEEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHH-CcCEEEEEe
Confidence            78999999999999998887776 499998886

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=84.58  E-value=0.67  Score=34.36  Aligned_cols=36  Identities=8%  Similarity=0.060  Sum_probs=29.7

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcc
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTR  269 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~  269 (392)
                      .+.+|+|.| +|.+|+=+++.+.. .|.+|.++.+++.
T Consensus        31 ~~~~vvIiG-gG~iG~E~A~~l~~-~g~~Vtlv~~~~~   66 (122)
T d1xhca2          31 NSGEAIIIG-GGFIGLELAGNLAE-AGYHVKLIHRGAM   66 (122)
T ss_dssp             HHSEEEEEE-CSHHHHHHHHHHHH-TTCEEEEECSSSC
T ss_pred             cCCcEEEEC-CcHHHHHHHHHhhc-ccceEEEEecccc
Confidence            357899998 99999988888887 4999998886543

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

Probab=84.34  E-value=0.97  Score=39.57  Aligned_cols=31  Identities=29%  Similarity=0.316  Sum_probs=27.0

Q ss_pred             eEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeC
Q 016265          235 SILVLNGSGGVGSLVIQLAKQVFGASRVAATS  266 (392)
Q Consensus       235 ~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~  266 (392)
                      +|||+||+|-+|...+..+.. .|.+|+++++
T Consensus         2 KiLItG~tGfIG~~l~~~L~~-~g~~V~~~d~   32 (338)
T d1udca_           2 RVLVTGGSGYIGSHTCVQLLQ-NGHDVIILDN   32 (338)
T ss_dssp             EEEEETTTSHHHHHHHHHHHH-TTCEEEEEEC
T ss_pred             EEEEECCCCHHHHHHHHHHHH-CcCEEEEEEC
Confidence            599999999999998888877 4999998874

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=83.85  E-value=1.4  Score=32.59  Aligned_cols=36  Identities=14%  Similarity=0.241  Sum_probs=30.6

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcc
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTR  269 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~  269 (392)
                      ..++++|+| +|-+|+=.+++...+ |.+|.++.+++.
T Consensus        24 ~p~~~viiG-~G~iglE~A~~~~~~-G~~Vtvi~~~~~   59 (123)
T d1dxla2          24 IPKKLVVIG-AGYIGLEMGSVWGRI-GSEVTVVEFASE   59 (123)
T ss_dssp             CCSEEEESC-CSHHHHHHHHHHHHH-TCEEEEECSSSS
T ss_pred             cCCeEEEEc-cchHHHHHHHHHHhc-CCeEEEEEEccc
Confidence            357999998 999999999999885 999999886553

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=83.42  E-value=1.5  Score=32.38  Aligned_cols=40  Identities=15%  Similarity=0.116  Sum_probs=32.2

Q ss_pred             hcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCc
Q 016265          227 RTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSST  268 (392)
Q Consensus       227 ~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~  268 (392)
                      ......+++|+|.| +|.+|+-+++.+.. .|.+|.++...+
T Consensus        24 ~~~~~~~k~vvViG-gG~iG~E~A~~l~~-~g~~Vtlie~~~   63 (123)
T d1nhpa2          24 KTVDPEVNNVVVIG-SGYIGIEAAEAFAK-AGKKVTVIDILD   63 (123)
T ss_dssp             HHTCTTCCEEEEEC-CSHHHHHHHHHHHH-TTCEEEEEESSS
T ss_pred             HhhccCCCEEEEEC-ChHHHHHHHHHhhc-cceEEEEEEecC
Confidence            34445678999998 99999999888888 499999887643

>d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=82.90  E-value=0.49  Score=36.90  Aligned_cols=87  Identities=24%  Similarity=0.290  Sum_probs=50.9

Q ss_pred             CCeEEEEcCCCcHHHHHHHHHHHhcCC--eEEEEeCCcccHHHHHhcCCcEEEeCCC-----CccccCCCCccEEEecCc
Q 016265          233 GKSILVLNGSGGVGSLVIQLAKQVFGA--SRVAATSSTRNLEFLKSLGADLAIDYTK-----DNFEDLPEKFDVVYDAIG  305 (392)
Q Consensus       233 g~~VlI~Ga~G~vG~~aiqlak~~~G~--~vv~~~~~~~~~~~~~~~G~~~vi~~~~-----~~~~~~~~~~D~vid~~G  305 (392)
                      |=+|.|+||+|-+|.-.++++.. +..  ..+....+.+      ..|-. +-+...     ..........|++|-+.+
T Consensus         1 g~kVaIvGATGyvG~eLirlL~~-H~fp~~~l~~~~s~~------s~G~~-~~~~~~~~~~~~~~~~~~~~~d~~f~~~~   72 (154)
T d2gz1a1           1 GYTVAVVGATGAVGAQMIKMLEE-STLPIDKIRYLASAR------SAGKS-LKFKDQDITIEETTETAFEGVDIALFSAG   72 (154)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHT-CCSCEEEEEEEECGG------GTTCE-EEETTEEEEEEECCTTTTTTCSEEEECSC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHc-CCCCceEEEEecccc------ccccc-ccccCCcccccccchhhhhhhhhhhhccC
Confidence            45799999999999999999865 432  2222222321      12211 111000     001112346799998887


Q ss_pred             ---cHHHHHHhcccCCeEEEEcCCC
Q 016265          306 ---QCDRAVKAIKEGGTVVALTGAV  327 (392)
Q Consensus       306 ---~~~~~~~~l~~~G~iv~~g~~~  327 (392)
                         +.+...+.+..+-+++..+..-
T Consensus        73 ~~~s~~~~~~~~~~~~~VIDlSsdf   97 (154)
T d2gz1a1          73 SSTSAKYAPYAVKAGVVVVDNTSYF   97 (154)
T ss_dssp             HHHHHHHHHHHHHTTCEEEECSSTT
T ss_pred             ccchhhHHhhhccccceehhcChhh
Confidence               2456666778888999887643

>d1v71a1 c.79.1.1 (A:6-323) Hypothetical protein C320.14 (SPCC320.14, SPCC330.15c) {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Hypothetical protein C320.14 (SPCC320.14, SPCC330.15c)
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=82.78  E-value=1.1  Score=39.06  Aligned_cols=87  Identities=14%  Similarity=0.163  Sum_probs=61.1

Q ss_pred             EEEEcCCCcHHHHHHHHHHHhcCCeEEEEeC---CcccHHHHHhcCCcEEEeCCCC-cccc----C--------------
Q 016265          236 ILVLNGSGGVGSLVIQLAKQVFGASRVAATS---STRNLEFLKSLGADLAIDYTKD-NFED----L--------------  293 (392)
Q Consensus       236 VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~---~~~~~~~~~~~G~~~vi~~~~~-~~~~----~--------------  293 (392)
                      .+|.+.+|..|.+.+..|+. .|.+.+++..   ++.+.+.++.+|++.+...... ....    .              
T Consensus        71 ~vv~~ssGN~g~a~A~~a~~-~g~~~~i~~p~~~~~~k~~~l~~~Ga~vi~~~~~~~~~~~~a~~~a~~~g~~~~~~~~~  149 (318)
T d1v71a1          71 GVLTFSSGNHAQAIALSAKI-LGIPAKIIMPLDAPEAKVAATKGYGGQVIMYDRYKDDREKMAKEISEREGLTIIPPYDH  149 (318)
T ss_dssp             CEEECCSSHHHHHHHHHHHH-TTCCEEEEEETTCCHHHHHHHHHTTCEEEEECTTTTCHHHHHHHHHHHHTCBCCCSSSS
T ss_pred             eeeeeccchhhHHHHHhhcc-cccceeecccccccHHHHHHHHHcCCcEEeccCCchHHHHHHHHHHHhcCCEecCCccc
Confidence            45666699999999999998 5998777763   6667888899999866532221 1000    0              


Q ss_pred             -----------------CCCccEEEecCcc------HHHHHHhcccCCeEEEE
Q 016265          294 -----------------PEKFDVVYDAIGQ------CDRAVKAIKEGGTVVAL  323 (392)
Q Consensus       294 -----------------~~~~D~vid~~G~------~~~~~~~l~~~G~iv~~  323 (392)
                                       ...+|.+|-++|+      +...++...+..+++.+
T Consensus       150 ~~~~~g~~t~~~Ei~~q~~~~d~vvv~~G~GG~~~Gi~~~~~~~~~~~~ii~v  202 (318)
T d1v71a1         150 PHVLAGQGTAAKELFEEVGPLDALFVCLGGGGLLSGSALAARHFAPNCEVYGV  202 (318)
T ss_dssp             HHHHHHHTHHHHHHHHHHCCCSEEEEECSSSHHHHHHHHHHHHHCTTCEEEEE
T ss_pred             cccccccchHHHHHHHhcCCCCEEEEcCCchHHHHHHHHHHHhhCCCceeecc
Confidence                             1247999998872      46777788888888766

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=82.76  E-value=1.1  Score=33.15  Aligned_cols=37  Identities=14%  Similarity=0.254  Sum_probs=31.4

Q ss_pred             CCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCc
Q 016265          230 FSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSST  268 (392)
Q Consensus       230 ~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~  268 (392)
                      ++++++|+|.| +|.+|.=.+..++. .|.+|.++.+++
T Consensus        27 ~~~~~~vvIIG-gG~iG~E~A~~l~~-~g~~Vtli~~~~   63 (121)
T d1d7ya2          27 LRPQSRLLIVG-GGVIGLELAATART-AGVHVSLVETQP   63 (121)
T ss_dssp             CCTTCEEEEEC-CSHHHHHHHHHHHH-TTCEEEEEESSS
T ss_pred             hhcCCeEEEEC-cchhHHHHHHHhhc-ccceEEEEeecc
Confidence            46779999998 99999988888887 499999998654

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=82.69  E-value=0.89  Score=39.91  Aligned_cols=95  Identities=18%  Similarity=0.220  Sum_probs=57.3

Q ss_pred             cCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCC-eEEEEeCCcccHHHHHh----cCCc---E-EEeCCCCcc----ccCC
Q 016265          228 TGFSAGKSILVLNGSGGVGSLVIQLAKQVFGA-SRVAATSSTRNLEFLKS----LGAD---L-AIDYTKDNF----EDLP  294 (392)
Q Consensus       228 ~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~-~vv~~~~~~~~~~~~~~----~G~~---~-vi~~~~~~~----~~~~  294 (392)
                      ..+.+|++||=..  ++.|-.++.+++  .|+ .|+.++.++..++.+++    .|.+   + ++..+..++    ....
T Consensus       140 ~~~~~g~~VLdlf--~~~G~~sl~aa~--~ga~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~~l~~~~~~~  215 (317)
T d2b78a2         140 NGSAAGKTVLNLF--SYTAAFSVAAAM--GGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHH  215 (317)
T ss_dssp             HTTTBTCEEEEET--CTTTHHHHHHHH--TTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTT
T ss_pred             HHhhCCCceeecC--CCCcHHHHHHHh--CCCceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHHHHHHHHHhhc
Confidence            4567899998764  233444455554  366 57788888888887753    2322   1 233222222    2235


Q ss_pred             CCccEEEe-cC--c-------c--------HHHHHHhcccCCeEEEEcCC
Q 016265          295 EKFDVVYD-AI--G-------Q--------CDRAVKAIKEGGTVVALTGA  326 (392)
Q Consensus       295 ~~~D~vid-~~--G-------~--------~~~~~~~l~~~G~iv~~g~~  326 (392)
                      +.||+||- .-  +       .        +..++++|+|||.++.....
T Consensus       216 ~~fD~Ii~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~scs  265 (317)
T d2b78a2         216 LTYDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNA  265 (317)
T ss_dssp             CCEEEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             CCCCEEEEcChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence            67998883 21  1       0        35688899999999877653

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=82.62  E-value=1.1  Score=33.00  Aligned_cols=38  Identities=18%  Similarity=0.283  Sum_probs=31.2

Q ss_pred             CCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCc
Q 016265          229 GFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSST  268 (392)
Q Consensus       229 ~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~  268 (392)
                      .++..++|+|.| +|.+|+=.++.+.. .|.+|.++.+++
T Consensus        18 ~l~~p~~v~IiG-gG~iG~E~A~~l~~-~g~~Vtlv~~~~   55 (117)
T d1onfa2          18 NIKESKKIGIVG-SGYIAVELINVIKR-LGIDSYIFARGN   55 (117)
T ss_dssp             TCCCCSEEEEEC-CSHHHHHHHHHHHT-TTCEEEEECSSS
T ss_pred             ccCCCCEEEEEC-CchHHHHHHHHHHh-ccccceeeehhc
Confidence            344568999998 99999998888887 599999998654

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=82.45  E-value=0.58  Score=39.91  Aligned_cols=32  Identities=25%  Similarity=0.366  Sum_probs=27.5

Q ss_pred             eEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCc
Q 016265          235 SILVLNGSGGVGSLVIQLAKQVFGASRVAATSST  268 (392)
Q Consensus       235 ~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~  268 (392)
                      .|+|.| +|+.|++++..++. .|.++++++..+
T Consensus         4 ~V~IvG-aGp~Gl~~A~~L~~-~G~~v~vlE~~~   35 (292)
T d1k0ia1           4 QVAIIG-AGPSGLLLGQLLHK-AGIDNVILERQT   35 (292)
T ss_dssp             SEEEEC-CSHHHHHHHHHHHH-HTCCEEEECSSC
T ss_pred             CEEEEC-cCHHHHHHHHHHHH-CCCCEEEEeCCC
Confidence            489998 99999998888877 499999998754

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=82.18  E-value=1.8  Score=34.05  Aligned_cols=92  Identities=17%  Similarity=0.267  Sum_probs=53.8

Q ss_pred             cCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHH----hcCCc-EEEeCCCCcc----ccCCCCcc
Q 016265          228 TGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLK----SLGAD-LAIDYTKDNF----EDLPEKFD  298 (392)
Q Consensus       228 ~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~----~~G~~-~vi~~~~~~~----~~~~~~~D  298 (392)
                      ..+..|.+||=.+  +|.|..++.+++  .|++++.++.+++..+.++    .+|.. .+...+.+.+    ....+.||
T Consensus        37 ~~~~~g~~vLDl~--~G~G~~~i~a~~--~ga~vv~vD~~~~a~~~~~~N~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD  112 (171)
T d1ws6a1          37 LRYPRRGRFLDPF--AGSGAVGLEAAS--EGWEAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFT  112 (171)
T ss_dssp             HHCTTCCEEEEET--CSSCHHHHHHHH--TTCEEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEE
T ss_pred             ccccCCCeEEEec--cccchhhhhhhh--ccchhhhcccCHHHHhhhhHHHHhhccccceeeeehhcccccccccCCccc
Confidence            3467788887664  333445566554  3899998888888777664    45543 3443333222    12345799


Q ss_pred             EEE-ec---Cc---cHHHHH--HhcccCCeEEEE
Q 016265          299 VVY-DA---IG---QCDRAV--KAIKEGGTVVAL  323 (392)
Q Consensus       299 ~vi-d~---~G---~~~~~~--~~l~~~G~iv~~  323 (392)
                      +|| |.   .+   .+..++  ..++++|.++.-
T Consensus       113 ~If~DPPY~~~~~~~l~~l~~~~ll~~~g~ivie  146 (171)
T d1ws6a1         113 VAFMAPPYAMDLAALFGELLASGLVEAGGLYVLQ  146 (171)
T ss_dssp             EEEECCCTTSCTTHHHHHHHHHTCEEEEEEEEEE
T ss_pred             eeEEccccccCHHHHHHHHHHcCCcCCCeEEEEE
Confidence            997 33   12   123332  358888887653

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=82.10  E-value=0.7  Score=37.55  Aligned_cols=31  Identities=16%  Similarity=0.281  Sum_probs=26.4

Q ss_pred             eEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCC
Q 016265          235 SILVLNGSGGVGSLVIQLAKQVFGASRVAATSS  267 (392)
Q Consensus       235 ~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~  267 (392)
                      -|+|+| +|+.|+.++..+.. .|.+|++++..
T Consensus         5 DvvVIG-gGpaGl~aA~~aa~-~G~kV~vie~~   35 (221)
T d1dxla1           5 DVVIIG-GGPGGYVAAIKAAQ-LGFKTTCIEKR   35 (221)
T ss_dssp             CEEEEC-CSHHHHHHHHHHHH-HTCCEEEEECS
T ss_pred             CEEEEC-CCHHHHHHHHHHHH-CCCcEEEEEec
Confidence            378888 89999999888887 49999999864

>d2nvwa1 c.2.1.3 (A:2-154,A:374-457) Galactose/lactose metabolism regulatory protein GAL80 {Yeast (Kluyveromyces lactis) [TaxId: 28985]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Galactose/lactose metabolism regulatory protein GAL80
species: Yeast (Kluyveromyces lactis) [TaxId: 28985]

Probab=81.70  E-value=3.8  Score=33.77  Aligned_cols=111  Identities=9%  Similarity=0.093  Sum_probs=60.4

Q ss_pred             CeEEEEcCCCc----HHHHHHHHHHHh-cCCeEEEE-eCCcccHH-HHHhcCCcEEEeCCCCccccC--CCCccEEEecC
Q 016265          234 KSILVLNGSGG----VGSLVIQLAKQV-FGASRVAA-TSSTRNLE-FLKSLGADLAIDYTKDNFEDL--PEKFDVVYDAI  304 (392)
Q Consensus       234 ~~VlI~Ga~G~----vG~~aiqlak~~-~G~~vv~~-~~~~~~~~-~~~~~G~~~vi~~~~~~~~~~--~~~~D~vid~~  304 (392)
                      =+|.|+| .|.    ++...+...+.. .+.+++++ +++.++.+ .+++++....-.++  ++.++  ...+|+|+.|+
T Consensus        17 irvgiIG-~G~~~~~~~~~h~~ai~~~~~~~~ivav~d~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~iD~V~i~t   93 (237)
T d2nvwa1          17 IRVGFVG-LTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSSLQTIEQLQLKHATGFD--SLESFAQYKDIDMIVVSV   93 (237)
T ss_dssp             EEEEEEC-CCSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHHHHHHHHHTTCTTCEEES--CHHHHHHCTTCSEEEECS
T ss_pred             eEEEEEe-cCccccHHHHHHHHHHHhcCCCeEEEEEEcCCHHHHHHHHHhcccccceeec--chhhcccccccceeeccC
Confidence            3689998 665    334334444432 24677755 45555544 45677754332222  22222  35799999998


Q ss_pred             c---cHHHHHHhcccC-----CeEEEEcCCCCCCceEEEEeecHHHHHHHHHHHHC-CCcc
Q 016265          305 G---QCDRAVKAIKEG-----GTVVALTGAVTPPGFRFVVTSNGEVLKKLNPYLES-GKVK  356 (392)
Q Consensus       305 G---~~~~~~~~l~~~-----G~iv~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~-g~l~  356 (392)
                      .   ..+.+..+|..|     ++-|.+.-+.         ..+.+..++++++.++ +.+.
T Consensus        94 p~~~h~~~~~~al~aG~~~~~~k~V~~EKPl---------a~~~~e~~~l~~~a~~~~~~~  145 (237)
T d2nvwa1          94 KVPEHYEVVKNILEHSSQNLNLRYLYVEWAL---------AASVQQAEELYSISQQRANLQ  145 (237)
T ss_dssp             CHHHHHHHHHHHHHHSSSCSSCCEEEEESSS---------SSSHHHHHHHHHHHHTCTTCE
T ss_pred             CCcchhhHHHHHHHhcccccCCceEEEeccc---------cCCHHHHHHHHHHHhhcCCee
Confidence            7   356667777654     4445553322         1234556666666654 3443

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.63  E-value=0.57  Score=40.56  Aligned_cols=92  Identities=18%  Similarity=0.238  Sum_probs=54.1

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCC---------c-EEEeCCCCcc-ccCCCCccE
Q 016265          231 SAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGA---------D-LAIDYTKDNF-EDLPEKFDV  299 (392)
Q Consensus       231 ~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~---------~-~vi~~~~~~~-~~~~~~~D~  299 (392)
                      ..-++|||+|+  |-|..+-.++++-...+++++...++=.+.++++-.         . .++..+.-.+ ....+.+|+
T Consensus        77 ~~pk~vLiiGg--G~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDv  154 (285)
T d2o07a1          77 PNPRKVLIIGG--GDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDV  154 (285)
T ss_dssp             SSCCEEEEEEC--TTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEE
T ss_pred             cCcCeEEEeCC--CchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhcCCCCCCE
Confidence            34478999983  345566667765213466677777776777765421         0 1221111111 223457998


Q ss_pred             EE-ecCc------c------HHHHHHhcccCCeEEEEc
Q 016265          300 VY-DAIG------Q------CDRAVKAIKEGGTVVALT  324 (392)
Q Consensus       300 vi-d~~G------~------~~~~~~~l~~~G~iv~~g  324 (392)
                      || |...      .      ++.+-++|+++|.++.-+
T Consensus       155 Ii~D~~~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~  192 (285)
T d2o07a1         155 IITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQG  192 (285)
T ss_dssp             EEEECC-----------CHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEEcCCCCCCcccccccHHHHHHHHHhcCCCCeEEEec
Confidence            87 4332      1      477888999999998754

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=81.46  E-value=5.7  Score=30.01  Aligned_cols=31  Identities=16%  Similarity=0.074  Sum_probs=23.1

Q ss_pred             eEEEEcCCCcHHHHHHHHHHHhcCC--eEEEEeC
Q 016265          235 SILVLNGSGGVGSLVIQLAKQVFGA--SRVAATS  266 (392)
Q Consensus       235 ~VlI~Ga~G~vG~~aiqlak~~~G~--~vv~~~~  266 (392)
                      +|.|+|++|.+|..++..+... +.  +++..+.
T Consensus         2 KV~IiGaaG~VG~~~A~~l~~~-~l~~el~L~Di   34 (142)
T d1o6za1           2 KVSVVGAAGTVGAAAGYNIALR-DIADEVVFVDI   34 (142)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHT-TCCSEEEEECC
T ss_pred             eEEEECCCCcHHHHHHHHHHhC-CCCCEEEEEec
Confidence            6899998999999988887763 54  4555553

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=81.11  E-value=0.82  Score=38.25  Aligned_cols=32  Identities=25%  Similarity=0.175  Sum_probs=26.1

Q ss_pred             eEEEEcCCCcHHHHHHHHHHHhcCC-eEEEEeCCc
Q 016265          235 SILVLNGSGGVGSLVIQLAKQVFGA-SRVAATSST  268 (392)
Q Consensus       235 ~VlI~Ga~G~vG~~aiqlak~~~G~-~vv~~~~~~  268 (392)
                      .|+|+| +|..|++++.+++. .|. +|.+..+++
T Consensus         3 ~V~IvG-aG~aGl~~A~~L~~-~Gi~~V~V~Er~~   35 (288)
T d3c96a1           3 DILIAG-AGIGGLSCALALHQ-AGIGKVTLLESSS   35 (288)
T ss_dssp             EEEEEC-CSHHHHHHHHHHHH-TTCSEEEEEESSS
T ss_pred             EEEEEC-cCHHHHHHHHHHHh-CCCCeEEEEeCCC
Confidence            589998 99999999998888 496 777777644

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.06  E-value=0.8  Score=37.93  Aligned_cols=93  Identities=19%  Similarity=0.240  Sum_probs=59.7

Q ss_pred             CCCCCCeEEEEcCCCcHHHHHHHHHHHhc-CCeEEEEeCCcccHHHHH----hcCCcEEEeCCCCc----ccc-----CC
Q 016265          229 GFSAGKSILVLNGSGGVGSLVIQLAKQVF-GASRVAATSSTRNLEFLK----SLGADLAIDYTKDN----FED-----LP  294 (392)
Q Consensus       229 ~~~~g~~VlI~Ga~G~vG~~aiqlak~~~-G~~vv~~~~~~~~~~~~~----~~G~~~vi~~~~~~----~~~-----~~  294 (392)
                      +...-++||=+|  .+.|..++.+|+.+. +.+++.++.+++..+.++    +.|....+.....+    ..+     ..
T Consensus        56 ~~~~~k~vLEiG--t~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda~e~l~~~~~~~~~  133 (219)
T d2avda1          56 RLIQAKKALDLG--TFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEA  133 (219)
T ss_dssp             HHTTCCEEEEEC--CTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCT
T ss_pred             HccCCCeEEEEe--chhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEEEEeehhhcchhhhhhccc
Confidence            334557899997  456888888887642 568888888888766664    34643322221111    111     13


Q ss_pred             CCccEEEecCc------cHHHHHHhcccCCeEEEE
Q 016265          295 EKFDVVYDAIG------QCDRAVKAIKEGGTVVAL  323 (392)
Q Consensus       295 ~~~D~vid~~G------~~~~~~~~l~~~G~iv~~  323 (392)
                      ..||.||--..      -++.+++.|++||.++.=
T Consensus       134 ~~fD~ifiD~dk~~y~~~~~~~~~lL~~GGvii~D  168 (219)
T d2avda1         134 GTFDVAVVDADKENCSAYYERCLQLLRPGGILAVL  168 (219)
T ss_dssp             TCEEEEEECSCSTTHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CCccEEEEeCCHHHHHHHHHHHHHHhcCCcEEEEe
Confidence            46898874332      258899999999998764

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=80.95  E-value=0.71  Score=38.71  Aligned_cols=33  Identities=12%  Similarity=0.293  Sum_probs=27.2

Q ss_pred             eEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcc
Q 016265          235 SILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTR  269 (392)
Q Consensus       235 ~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~  269 (392)
                      .|+|+| +|+.|++++..+.. .|.+|++++.++.
T Consensus         6 DViIIG-aG~aGl~aA~~la~-~G~~V~vlEk~~~   38 (253)
T d2gqfa1           6 ENIIIG-AGAAGLFCAAQLAK-LGKSVTVFDNGKK   38 (253)
T ss_dssp             SEEEEC-CSHHHHHHHHHHHH-TTCCEEEECSSSS
T ss_pred             cEEEEC-cCHHHHHHHHHHHH-CCCcEEEEecCCC
Confidence            388998 99999998877776 4999999987654

>d1omoa_ c.2.1.13 (A:) Archaeal alanine dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Archaeal alanine dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=80.90  E-value=2.9  Score=36.44  Aligned_cols=92  Identities=11%  Similarity=0.139  Sum_probs=60.2

Q ss_pred             CCCCCeEEEEcCCCcHHHHHHHHHHHhcCCe-EEEEeCCcccHHHH----HhcCCcEEEeCCCCccccCCCCccEEEecC
Q 016265          230 FSAGKSILVLNGSGGVGSLVIQLAKQVFGAS-RVAATSSTRNLEFL----KSLGADLAIDYTKDNFEDLPEKFDVVYDAI  304 (392)
Q Consensus       230 ~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~-vv~~~~~~~~~~~~----~~~G~~~vi~~~~~~~~~~~~~~D~vid~~  304 (392)
                      .+..+++.|+| +|..+..-++.....+..+ +.+..+++++.+.+    +..+.....+.     .+...+.|+|+-|+
T Consensus       122 ~~~~~~l~iiG-aG~QA~~~~~al~~~~~i~~i~v~~r~~e~~~~~~~~~~~~~~~~~~~~-----~~a~~~aDiV~taT  195 (320)
T d1omoa_         122 RKNSSVFGFIG-CGTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCEDRGISASVQP-----AEEASRCDVLVTTT  195 (320)
T ss_dssp             CTTCCEEEEEC-CSHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHHHTTCCEEECC-----HHHHTSSSEEEECC
T ss_pred             cCCccEEEEec-CcccHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHhcCCccccch-----hhhhccccEEEEec
Confidence            34457899998 9999999888877777764 44556777765433    34454433321     22235789999998


Q ss_pred             ccHHH--HHHhcccCCeEEEEcCCC
Q 016265          305 GQCDR--AVKAIKEGGTVVALTGAV  327 (392)
Q Consensus       305 G~~~~--~~~~l~~~G~iv~~g~~~  327 (392)
                      .+.+-  -.+.+++|-.+..+|.+.
T Consensus       196 ~s~~P~~~~~~l~~G~hv~~iGs~~  220 (320)
T d1omoa_         196 PSRKPVVKAEWVEEGTHINAIGADG  220 (320)
T ss_dssp             CCSSCCBCGGGCCTTCEEEECSCCS
T ss_pred             cCcccccchhhcCCCCeEeecCCcc
Confidence            74211  124689988888888654

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=80.72  E-value=4.2  Score=30.60  Aligned_cols=66  Identities=23%  Similarity=0.152  Sum_probs=37.5

Q ss_pred             eEEEEcCCCcHHHHHHHHHHHhcC--CeEEEEeCCcccHHH-HHh----cC--CcEEEeCCCCccccCCCCccEEEecCc
Q 016265          235 SILVLNGSGGVGSLVIQLAKQVFG--ASRVAATSSTRNLEF-LKS----LG--ADLAIDYTKDNFEDLPEKFDVVYDAIG  305 (392)
Q Consensus       235 ~VlI~Ga~G~vG~~aiqlak~~~G--~~vv~~~~~~~~~~~-~~~----~G--~~~vi~~~~~~~~~~~~~~D~vid~~G  305 (392)
                      +|.|+| +|.+|...+..+... +  .+++..+..+++.+- +.+    ..  ....+.  ..+.++ .++.|+|+-+.|
T Consensus         2 KI~IIG-aG~VG~~~a~~l~~~-~l~~el~L~Di~~~~~~g~~~Dl~~~~~~~~~~~~~--~~~~~~-~~~adivvitag   76 (140)
T d1a5za1           2 KIGIVG-LGRVGSSTAFALLMK-GFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIY--AGDYAD-LKGSDVVIVAAG   76 (140)
T ss_dssp             EEEEEC-CSHHHHHHHHHHHHH-TCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEE--ECCGGG-GTTCSEEEECCC
T ss_pred             EEEEEC-cCHHHHHHHHHHHhC-CCCCEEEEEecccccccchhcccccccccccccccc--CCcHHH-hcCCCEEEEecc
Confidence            578998 699999877766553 4  356666766655331 111    11  111111  112222 357899999877

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=80.63  E-value=4.5  Score=30.53  Aligned_cols=67  Identities=12%  Similarity=0.082  Sum_probs=36.9

Q ss_pred             eEEEEcCCCcHHHHHHHHHHHhcCC--eEEEEeCCcccH-HHHHhcC-----CcEEEeCCCCccccCCCCccEEEecCc
Q 016265          235 SILVLNGSGGVGSLVIQLAKQVFGA--SRVAATSSTRNL-EFLKSLG-----ADLAIDYTKDNFEDLPEKFDVVYDAIG  305 (392)
Q Consensus       235 ~VlI~Ga~G~vG~~aiqlak~~~G~--~vv~~~~~~~~~-~~~~~~G-----~~~vi~~~~~~~~~~~~~~D~vid~~G  305 (392)
                      +|.|+| +|.+|...+..+.. .+.  +++..+..+++. ..+.++-     ...+... ..+.. ..++.|+|+-+.|
T Consensus         3 KI~IIG-aG~VG~~~a~~l~~-~~l~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~-~~~~~-~~~~adivvitag   77 (142)
T d1y6ja1           3 KVAIIG-AGFVGASAAFTMAL-RQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLY-AGDYS-DVKDCDVIVVTAG   77 (142)
T ss_dssp             CEEEEC-CSHHHHHHHHHHHH-TTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC---CGG-GGTTCSEEEECCC
T ss_pred             eEEEEC-CCHHHHHHHHHHHh-cCCCCEEEEEeccCCccceeeeeeccCcccCCCeeEe-eCcHH-HhCCCceEEEecc
Confidence            588898 69999998877766 354  577777665542 2222221     1111111 11222 2357899998877

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=80.47  E-value=0.78  Score=38.06  Aligned_cols=31  Identities=19%  Similarity=0.274  Sum_probs=25.5

Q ss_pred             EEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCc
Q 016265          236 ILVLNGSGGVGSLVIQLAKQVFGASRVAATSST  268 (392)
Q Consensus       236 VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~  268 (392)
                      |+|+| +|..|++++..+.. .|.+|++++.++
T Consensus         5 ViIIG-aG~aGl~aA~~la~-~G~~V~liEk~~   35 (251)
T d2i0za1           5 VIVIG-GGPSGLMAAIGAAE-EGANVLLLDKGN   35 (251)
T ss_dssp             EEEEC-CSHHHHHHHHHHHH-TTCCEEEECSSS
T ss_pred             EEEEC-cCHHHHHHHHHHHH-CCCcEEEEeCCC
Confidence            78998 99999987766666 499999998754

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=80.46  E-value=3.3  Score=30.45  Aligned_cols=86  Identities=13%  Similarity=0.137  Sum_probs=56.4

Q ss_pred             eEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHhcCCcEEE-eCCCCc-ccc-CCCCccEEEecCcc-----
Q 016265          235 SILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKSLGADLAI-DYTKDN-FED-LPEKFDVVYDAIGQ-----  306 (392)
Q Consensus       235 ~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~~G~~~vi-~~~~~~-~~~-~~~~~D~vid~~G~-----  306 (392)
                      .|+|.| .|.+|...+...+   +..+++++.++++.+.++..|...+. |..+.. +.+ ..+.++.++-++..     
T Consensus         2 HivI~G-~g~~g~~l~~~L~---~~~i~vi~~d~~~~~~~~~~~~~~i~Gd~~~~~~L~~a~i~~A~~vi~~~~~d~~n~   77 (129)
T d2fy8a1           2 HVVICG-WSESTLECLRELR---GSEVFVLAEDENVRKKVLRSGANFVHGDPTRVSDLEKANVRGARAVIVNLESDSETI   77 (129)
T ss_dssp             CEEEES-CCHHHHHHHHTSC---GGGEEEEESCTTHHHHHHHTTCEEEESCTTSHHHHHHTTCTTCSEEEECCSSHHHHH
T ss_pred             EEEEEC-CCHHHHHHHHHHc---CCCCEEEEcchHHHHHHHhcCccccccccCCHHHHHHhhhhcCcEEEEeccchhhhH
Confidence            588888 8999987776553   55678888888888888888875443 222222 222 24568888888763     


Q ss_pred             -HHHHHHhcccCCeEEEEc
Q 016265          307 -CDRAVKAIKEGGTVVALT  324 (392)
Q Consensus       307 -~~~~~~~l~~~G~iv~~g  324 (392)
                       .-...+.+.|..+++...
T Consensus        78 ~~~~~~r~~~~~~~iia~~   96 (129)
T d2fy8a1          78 HCILGIRKIDESVRIIAEA   96 (129)
T ss_dssp             HHHHHHHHHCSSSCEEEEC
T ss_pred             HHHHHHHHHCCCceEEEEE
Confidence             234555667777666553

>d1y7la1 c.79.1.1 (A:2-311) O-acetylserine sulfhydrylase (Cysteine synthase) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Haemophilus influenzae [TaxId: 727]

Probab=80.43  E-value=2.5  Score=36.53  Aligned_cols=58  Identities=22%  Similarity=0.289  Sum_probs=44.5

Q ss_pred             HHHhcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeC---CcccHHHHHhcCCcEEE
Q 016265          224 GLERTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATS---STRNLEFLKSLGADLAI  283 (392)
Q Consensus       224 al~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~---~~~~~~~~~~~G~~~vi  283 (392)
                      +.+...+.++++|+... +|.-|++++..|+.. |.+.+++..   +..|.+.++.+|+..+.
T Consensus        52 a~~~g~~~~~~~vv~~S-sGN~g~a~A~~a~~~-G~~~~i~~p~~~~~~k~~~~~~~GA~vv~  112 (310)
T d1y7la1          52 AEKDGTLTKGKEIVDAT-SGNTGIALAYVAAAR-GYKITLTMPETMSLERKRLLCGLGVNLVL  112 (310)
T ss_dssp             HHHTTSSCTTCEEEESC-CSHHHHHHHHHHHHH-TCCEEEEEETTSCHHHHHHHHHTTCEEEE
T ss_pred             HHHcCCCCCCceeeeec-CCCchHHHHHHHHHh-hccccccchhhhhhhhhhhHHHhCCceEe
Confidence            44555667787766664 999999999999984 998777763   55678888999987664

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=80.41  E-value=1.1  Score=36.75  Aligned_cols=33  Identities=24%  Similarity=0.242  Sum_probs=27.8

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeC
Q 016265          232 AGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATS  266 (392)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~  266 (392)
                      .-.+|+|+| +|..|++++..+.. .|.+|.++++
T Consensus         5 ~~~kVvVIG-aGiaGl~~A~~L~~-~G~~V~vier   37 (268)
T d1c0pa1           5 SQKRVVVLG-SGVIGLSSALILAR-KGYSVHILAR   37 (268)
T ss_dssp             CSCEEEEEC-CSHHHHHHHHHHHH-TTCEEEEEES
T ss_pred             CCCcEEEEC-ccHHHHHHHHHHHH-CCCCEEEEeC
Confidence            345799998 99999998888877 4999999985

>d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Pyrobaculum islandicum [TaxId: 2277]

Probab=80.40  E-value=1.8  Score=36.29  Aligned_cols=36  Identities=22%  Similarity=0.331  Sum_probs=31.0

Q ss_pred             CCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCC
Q 016265          230 FSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSS  267 (392)
Q Consensus       230 ~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~  267 (392)
                      --.|.+|+|.| .|.+|..+++++... |++++.+..+
T Consensus        28 ~l~g~~v~IqG-fGnVG~~~a~~L~~~-Gakvv~vsD~   63 (242)
T d1v9la1          28 GIEGKTVAIQG-MGNVGRWTAYWLEKM-GAKVIAVSDI   63 (242)
T ss_dssp             CCTTCEEEEEC-CSHHHHHHHHHHHTT-TCEEEEEECS
T ss_pred             CCCCCEEEEEC-CCHHHHHHHHHHHHc-CCeEEEeecc
Confidence            34789999998 999999999999984 9999877643

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.13  E-value=0.86  Score=38.67  Aligned_cols=47  Identities=17%  Similarity=0.085  Sum_probs=32.9

Q ss_pred             hcCCCCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCCcccHHHHHh
Q 016265          227 RTGFSAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLEFLKS  276 (392)
Q Consensus       227 ~~~~~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~~~~~~~~~~  276 (392)
                      ..+...|++||=+| +|+ |...+..+.. ++.+++.++-++.-++.+++
T Consensus        49 ~~g~~~g~~vLDiG-cG~-g~~~~~~~~~-~~~~v~~~D~S~~~i~~~~~   95 (263)
T d2g72a1          49 ATGEVSGRTLIDIG-SGP-TVYQLLSACS-HFEDITMTDFLEVNRQELGR   95 (263)
T ss_dssp             HTSCSCCSEEEEET-CTT-CCGGGTTGGG-GCSEEEEECSCHHHHHHHHH
T ss_pred             CCCCCCCcEEEEec-cCC-CHHHHHHhcc-cCCeEEEEeCCHHHHHHHHH
Confidence            34566789999998 655 5444444444 36688999999888887764

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.04  E-value=1  Score=38.49  Aligned_cols=35  Identities=14%  Similarity=0.260  Sum_probs=28.8

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEEEeCC
Q 016265          231 SAGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSS  267 (392)
Q Consensus       231 ~~g~~VlI~Ga~G~vG~~aiqlak~~~G~~vv~~~~~  267 (392)
                      ++..+|+|+| +|..|+.|+..+.. .|.+|.+...+
T Consensus         3 ~~~~kViVIG-aG~aGL~aA~~L~~-~G~~V~VlEa~   37 (449)
T d2dw4a2           3 KKTGKVIIIG-SGVSGLAAARQLQS-FGMDVTLLEAR   37 (449)
T ss_dssp             SCCCEEEEEC-CBHHHHHHHHHHHH-TTCEEEEECSS
T ss_pred             CCCCcEEEEC-CCHHHHHHHHHHHh-CCCCEEEEeCC
Confidence            3456799998 99999999888877 49999888764