Citrus Sinensis ID: 016290

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390--
Protein Sequence
MAQGVVKNPDEQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHLGEFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGIRALTIEKDNAPKWDPPTLDKVDDDKVDLVFQPFGEDLELQIPENENCRWDGKYENSAYATSQVTAEAK
Secondary Structure (PSIPRED)
cccccccccccccEEEEEEccEEEEEEccccccccccHHHHHHHHHHHHHHHcccccEEEEEEcccccccccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHccccEEEEEccEEEcccccccccccEEEEccccccccccccccccccccHHHHHcccccccHHHHHcccccccHHHHHHHcccccccccccHHHHHHHHHccccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHcccccHHHHHHHHHHHHcccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccccccccccEEEEcccccccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHccccccccEEEEEEccEEEEEEccHHHHHHccHHHHHHHHHHHHHHHcccccEEEEEEccccEEEcccHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccccEEEEEccEEEccccEEEEcccEEEEEccEEEcccHHHEccccccccHHHccccccccEEEEEEccccccHHHHHHHccccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHccccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHcccccHHHHHHHHHHHHcccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccccccccccEEEEEEEcccccccccccHHHccHHHHHHHHccccccHcccccccccccccccccccccccccccHHcc
Coil and Loop (DISEMBL)
maqgvvknpdeqvvLGEEIGNVrlvtlnrprqlnVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVgrafsaggdlkmfydgrnskdscLEVVYRMYWLCHHIHTYKKTQVALAHGitmgggaslmVPLKFSVVtektvfstpeasigfhtdcgfsfihsrlpghlGEFLALTGARLNGKELVAAGLAthfvpseklpELEKRLIGLNTGDEIAVKSAIEEFSEdvqldgqsvlnkqsiideCFSKETVAEIIKSFEAEagkegngwigpvlkglkkssptglKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGIRALtiekdnapkwdpptldkvdddkvdlvfqpfgedlelqipenencrwdgkyensayaTSQVTAEAK
Flexible Loop (DISEMBL)
maqgvvknpdeqvvlgeeignvrlvtlnrprqlnvISSKVVSLLAEYLEKwekddqaklVIVKGVGrafsaggdlkmfydgrnSKDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHLGEFLALTGARLNGKELVAAGLAThfvpseklpeLEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKETVAEIIKSFeaeagkegngwigpvlkglkkssptglkitlrsvregreqSLAECLKKEFRLTINILRAIISADIYEGIRALtiekdnapkwdpptldkvddDKVDLVFQpfgedlelqipenencrwdgkyensayatsqvtaeak
Low Complexity Region (SEG)
MAQGVVKNPDEQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHLGEFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGIRALTIEKDNAPKWDPPTldkvdddkvdlvFQPFGEDLELQIPENENCRWDGKYENSAYATSQVTAEAK
Disordered region (IsUnstruct)
************VVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHLGEFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKETVAEIIKSFEAEAGKEGNGWIGPVLKGLK*****GLKITLRSV*****QSLAECLKKEFRLTINILRAIISADIYEGIRALTIEKDNAPKWDPPTLDKVDDDKVDLVFQPFGEDLELQIPENENCRWDGKY***************
Disordered Region (DISOPRED)
***************GEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHLGEFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEE*************NKQSIIDECFSKETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGIRALTIEKDNAPKWDPPTLDKVDDDKVDLVFQPFGEDLELQIPENENCRWDGKYENSAYAT*QVT****
Disordered Region (DISEMBL)
MAQGVVKNPDEQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHLGEFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGIRALTIEKDNAPKWDPPTLDKVDDDKVDLVFQPFGEDLELQIPENENCRWDGKYENSAYATSQVTAEAK
Disordered Region (DISPRO)
***********QVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHLGEFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGIRALTIEKDNAPKWDPPTLDKVDDDKVDLVFQPFGEDLELQIPENENCRWDGKYENS*Y*TS*******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAQGVVKNPDEQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHLGEFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGIRALTIEKDNAPKWDPPTLDKVDDDKVDLVFQPFGEDLELQIPENENCRWDGKYENSAYATSQVTAEAK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	392	2.2.26 [Sep-21-2011]
Q9SHJ8	387	3-hydroxyisobutyryl-CoA h	yes	no	0.964	0.976	0.741	1e-170
Q9LKJ1	378	3-hydroxyisobutyryl-CoA h	no	no	0.931	0.965	0.422	2e-83
Q1PEY5	378	Probable 3-hydroxyisobuty	no	no	0.872	0.904	0.427	3e-77
Q6NMB0	378	Probable 3-hydroxyisobuty	no	no	0.869	0.902	0.425	4e-77
Q8RXN4	409	3-hydroxyisobutyryl-CoA h	no	no	0.900	0.863	0.416	6e-76
Q5XF59	401	3-hydroxyisobutyryl-CoA h	no	no	0.910	0.890	0.428	9e-74
Q5ZJ60	385	3-hydroxyisobutyryl-CoA h	yes	no	0.875	0.890	0.398	3e-64
Q58EB4	382	3-hydroxyisobutyryl-CoA h	yes	no	0.875	0.897	0.404	2e-63
Q6NVY1	386	3-hydroxyisobutyryl-CoA h	yes	no	0.862	0.875	0.394	4e-63
Q28FR6	385	3-hydroxyisobutyryl-CoA h	yes	no	0.859	0.875	0.394	3e-59

>sp|Q9SHJ8|HIBC8_ARATH 3-hydroxyisobutyryl-CoA hydrolase-like protein 5 OS=Arabidopsis thaliana GN=At1g06550 PE=2 SV=2

 Score =  597 bits (1540), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 281/379 (74%), Positives = 333/379 (87%), Gaps = 1/379 (0%)

Query: 7   KNPDEQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVG 66
           +N DE VV+GEE G+VRL TLNRPRQLNVIS +VV  LAEYLE WEKDDQ KL+++KG G
Sbjct: 6   QNIDEPVVIGEEKGSVRLTTLNRPRQLNVISPEVVFKLAEYLELWEKDDQTKLILIKGTG 65

Query: 67  RAFSAGGDLKMFYDGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMV 126
           RAFSAGGDLK+FY G+ SKDSCLEVVYRMYWLC+HIHTYKKTQV+L +GI+MGGGA+LMV
Sbjct: 66  RAFSAGGDLKVFYHGQESKDSCLEVVYRMYWLCYHIHTYKKTQVSLVNGISMGGGAALMV 125

Query: 127 PLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHLGEFLALTGARLNGKELVAAGL 186
           P+KFSVVTEKTVF+TPEAS GFHTDCGFS+IHSRLPGHLGEFLALTGARLNGKELVA G+
Sbjct: 126 PMKFSVVTEKTVFATPEASFGFHTDCGFSYIHSRLPGHLGEFLALTGARLNGKELVAIGM 185

Query: 187 ATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKE 246
           ATHFVPS KL +LE RL+ L++GD   V+S IEEFSE V LD  S+LNKQS+I+ECFSKE
Sbjct: 186 ATHFVPSGKLMDLEARLVSLDSGDADVVQSTIEEFSEKVNLDKDSILNKQSVINECFSKE 245

Query: 247 TVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFR 306
           +V +II++FEAEA K+GN WI PV+KGLK+SSPTGLKI L+S+REGR+Q+L++CLKKEFR
Sbjct: 246 SVKQIIQAFEAEASKDGNEWITPVIKGLKRSSPTGLKIVLQSIREGRKQTLSDCLKKEFR 305

Query: 307 LTINILRAIISADIYEGIRALTIEKDNAPKWDPPTLDKVDDDKVDLVFQPF-GEDLELQI 365
           LT+NILR  IS D+YEGIRALTI+KDN+PKW+P TLD+VDD+K++ VF+ F  +D+ELQI
Sbjct: 306 LTLNILRKTISPDMYEGIRALTIDKDNSPKWNPATLDEVDDEKINSVFKLFEDDDIELQI 365

Query: 366 PENENCRWDGKYENSAYAT 384
           PE E  RW GKYE S YA+
Sbjct: 366 PETEENRWGGKYETSGYAS 384

Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 1EC: .EC: 2EC: .EC: -

>sp|Q9LKJ1|HIBC1_ARATH 3-hydroxyisobutyryl-CoA hydrolase 1 OS=Arabidopsis thaliana GN=CHY1 PE=1 SV=1

 Score =  309 bits (792), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 155/367 (42%), Positives = 228/367 (62%), Gaps = 2/367 (0%)

Query: 6   VKNPDEQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGV 65
           V+   +  VL EE  +VR++TLNRP+QLN +S  ++S L +    +E+D   KLVI+KG 
Sbjct: 3   VEMASQSQVLVEEKSSVRILTLNRPKQLNALSFHMISRLLQLFLAFEEDPSVKLVILKGH 62

Query: 66  GRAFSAGGDLKMFYDGRNSKDSCLEVVY--RMYWLCHHIHTYKKTQVALAHGITMGGGAS 123
           GRAF AGGD+       N  +  L   Y    Y L + + TY K QV++ +GI MGGGA 
Sbjct: 63  GRAFCAGGDVAAVVRDINQGNWRLGANYFSSEYMLNYVMATYSKAQVSILNGIVMGGGAG 122

Query: 124 LMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHLGEFLALTGARLNGKELVA 183
           + V  +F + TE TVF+ PE ++G   D G S+  SRLPG  GE++ LTGARL+G E++A
Sbjct: 123 VSVHGRFRIATENTVFAMPETALGLFPDVGASYFLSRLPGFFGEYVGLTGARLDGAEMLA 182

Query: 184 AGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECF 243
            GLATHFVPS +L  LE  L  +N+ D     + ++ +++  +L  QS   +  +ID CF
Sbjct: 183 CGLATHFVPSTRLTALEADLCRINSNDPTFASTILDAYTQHPRLKQQSAYRRLDVIDRCF 242

Query: 244 SKETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKK 303
           S+ TV EII + E EA +E +GWI   ++ LKK SP  LKI+LRS+REGR Q + +CL +
Sbjct: 243 SRRTVEEIISALEREATQEADGWISATIQALKKGSPASLKISLRSIREGRLQGVGQCLIR 302

Query: 304 EFRLTINILRAIISADIYEGIRALTIEKDNAPKWDPPTLDKVDDDKVDLVFQPFGEDLEL 363
           E+R+  ++++  IS D  EG RA+ ++KD  PKW+P  L+ + D  V+  F+    + +L
Sbjct: 303 EYRMVCHVMKGEISKDFVEGCRAILVDKDKNPKWEPRRLEDMKDSMVEQYFERVEREDDL 362

Query: 364 QIPENEN 370
           ++P   N
Sbjct: 363 KLPPRNN 369

Involved in valine catabolism. May be indirectly involved in benzoic acid biosynthesis and in cold signaling and cold tolerance.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: .

EC: 4

>sp|Q1PEY5|HIBC2_ARATH Probable 3-hydroxyisobutyryl-CoA hydrolase 2 OS=Arabidopsis thaliana GN=At2g30650 PE=2 SV=1

 Score =  288 bits (738), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 147/344 (42%), Positives = 218/344 (63%), Gaps = 2/344 (0%)

Query: 14  VLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGG 73
           VL EE  +VR++T NRP+QLN +S  +VS L +    +E+D   KLV++KG GRAFSAGG
Sbjct: 7   VLVEEKSSVRILTFNRPKQLNALSFHMVSRLLQLFLAYEEDPSVKLVVLKGQGRAFSAGG 66

Query: 74  DLK-MFYDGRNSKDSCLEVVYRM-YWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFS 131
           D+  +  D    K       +++ Y L + + TY+K QV++ +GI MGGGA L    +F 
Sbjct: 67  DIPPIVRDILQGKLIRGAHYFKVGYTLNYVLSTYRKPQVSILNGIVMGGGAGLSTNGRFR 126

Query: 132 VVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHLGEFLALTGARLNGKELVAAGLATHFV 191
           + TE TVF+ PE ++G   D G S+  SRLPG  GE++ LTGARL+G E++A GLATHFV
Sbjct: 127 IATENTVFAMPETALGLFPDVGASYFLSRLPGFFGEYVGLTGARLDGAEMLACGLATHFV 186

Query: 192 PSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKETVAEI 251
           PS  L  LE  L  + + ++  + + ++ ++E   L+  S  ++  +ID CFSK TV EI
Sbjct: 187 PSISLTALEAELYKVGSSNQTFISTILDAYAEYPHLNQHSSYHRLDVIDRCFSKRTVEEI 246

Query: 252 IKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINI 311
             + E E  ++ N W+   ++ L+K+SP+ LKI+LRS+REGR Q + +CL +E+R+  ++
Sbjct: 247 FSALEREVTQKPNDWLLATIQALEKASPSCLKISLRSIREGRLQGVGQCLIREYRMVCHV 306

Query: 312 LRAIISADIYEGIRALTIEKDNAPKWDPPTLDKVDDDKVDLVFQ 355
           ++  IS D  EG RA+ I+KD  PKW P  L+ V D  VD  F+
Sbjct: 307 MKGDISKDFVEGCRAVLIDKDRNPKWQPRRLEDVTDSMVDQYFE 350

Involved in valine catabolism.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: .

EC: 4

>sp|Q6NMB0|HIBC3_ARATH Probable 3-hydroxyisobutyryl-CoA hydrolase 3 OS=Arabidopsis thaliana GN=At2g30660 PE=2 SV=1

 Score =  288 bits (738), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 146/343 (42%), Positives = 212/343 (61%), Gaps = 2/343 (0%)

Query: 14  VLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGG 73
           VL EE  +VR++TLNRP+QLN +   ++S L +    +E+D   KLVI+KG GRAF AGG
Sbjct: 7   VLVEEKSSVRILTLNRPKQLNALCFNMISRLLQLFRAYEEDPSVKLVILKGQGRAFCAGG 66

Query: 74  DLKMFYDGRNSKDSCL--EVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFS 131
           D+             L  +     Y L + + TY K QV++ +GI MG GA + +  +F 
Sbjct: 67  DVPPVVQNMVQGKWRLGADFFRDQYTLNYVMATYSKPQVSILNGIVMGAGAGVSIHGRFR 126

Query: 132 VVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHLGEFLALTGARLNGKELVAAGLATHFV 191
           + TE TVF+ PE S+G   D G S+  SRLPG  GE++ LTGARL+G EL+A GLATHFV
Sbjct: 127 IATENTVFAMPETSLGLFPDVGASYFLSRLPGFFGEYVGLTGARLDGAELLACGLATHFV 186

Query: 192 PSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKETVAEI 251
           PS +L  LE  L  + + D   V + ++ +++   L  +S  ++  +ID CFSK T+ EI
Sbjct: 187 PSTRLTALETDLCKVGSSDPSFVSTILDAYTQHPHLKQKSAYHRLDVIDRCFSKRTMEEI 246

Query: 252 IKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINI 311
           I + E E  +E + W    ++ LKKSSP+ LKI+LRS+REGR Q +  CL +E+R+  ++
Sbjct: 247 ISALERETTQELDDWSLTTIRALKKSSPSSLKISLRSIREGRLQGVGHCLTREYRMVCHV 306

Query: 312 LRAIISADIYEGIRALTIEKDNAPKWDPPTLDKVDDDKVDLVF 354
           ++  +S D+ EG RA+ I+KD  PKW+P  L+ + D  VD  F
Sbjct: 307 MKGDLSKDLVEGCRAILIDKDRNPKWEPRRLEDMKDSMVDQFF 349

Involved in valine catabolism.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: .

EC: 4

>sp|Q8RXN4|HIBC5_ARATH 3-hydroxyisobutyryl-CoA hydrolase-like protein 2, mitochondrial OS=Arabidopsis thaliana GN=At4g31810 PE=2 SV=1

 Score =  285 bits (728), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 152/365 (41%), Positives = 217/365 (59%), Gaps = 12/365 (3%)

Query: 11  EQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFS 70
           E  VL E     R   LN P  LN +S+ +V  L    E WE++     V++KG G+ F 
Sbjct: 40  EDQVLVEGKAKSRAAILNNPSSLNALSAPMVGRLKRLYESWEENPAISFVLMKGSGKTFC 99

Query: 71  AGGDLKMFYDGRNSKDS-----CLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLM 125
           +G D+   Y   N  ++       E +Y+  +L     TY K  +A+  G+TMG G  + 
Sbjct: 100 SGADVLSLYHSINEGNTEESKLFFENLYKFVYL---QGTYLKPNIAIMDGVTMGCGGGIS 156

Query: 126 VPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHLGEFLALTGARLNGKELVAAG 185
           +P  F V T+KTV + PE  IGFH D G S+  SRLPG+LGE+LALTG +LNG E++A G
Sbjct: 157 LPGMFRVATDKTVLAHPEVQIGFHPDAGASYYLSRLPGYLGEYLALTGQKLNGVEMIACG 216

Query: 186 LATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSK 245
           LATH+  + +LP +E+R+  L T D   ++ ++ ++ + V  D  SVL+K  +ID+ F  
Sbjct: 217 LATHYCLNARLPLIEERIGKLLTDDPAVIEDSLAQYGDLVYPDSSSVLHKIELIDKYFGL 276

Query: 246 ETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEF 305
           +TV EII++ E EA    N W    LK +K++SP  LKITL+S+REGR Q+L +CL  E+
Sbjct: 277 DTVEEIIEAMENEAANSCNEWCKKTLKQIKEASPLSLKITLQSIREGRFQTLDQCLTHEY 336

Query: 306 RLTINILRAIISADIYEGIRALTIEKDNAPKWDPPTLDKVDDDKVDLVFQPFGE----DL 361
           R++I  +  ++S D  EGIRA  ++KD APKWDPP L+ V  D VD  F P  E    D 
Sbjct: 337 RISICGVSKVVSGDFCEGIRARLVDKDFAPKWDPPRLEDVSKDMVDCYFTPASELDDSDS 396

Query: 362 ELQIP 366
           EL++P
Sbjct: 397 ELKLP 401

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: .

EC: -

>sp|Q5XF59|HIBC4_ARATH 3-hydroxyisobutyryl-CoA hydrolase-like protein 1, mitochondrial OS=Arabidopsis thaliana GN=At3g60510 PE=2 SV=1

 Score =  277 bits (709), Expect = 9e-74,   Method: Compositional matrix adjust.
 Identities = 155/362 (42%), Positives = 225/362 (62%), Gaps = 5/362 (1%)

Query: 14  VLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGG 73
           VL E  G  R   LNRP  LN +++ +   L +  + WE+D     V++KG GRAF AGG
Sbjct: 39  VLVEGSGCSRTAILNRPPALNALTTHMGYRLQKLYKNWEEDPNIGFVMMKGSGRAFCAGG 98

Query: 74  DLKMFYD--GRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFS 131
           D+   Y    R S D+  E    +Y   + + TY K  VA+ +G+TMGGG  + +P  F 
Sbjct: 99  DIVSLYHLRTRGSPDAIREFFSSLYSFIYLLGTYLKPHVAILNGVTMGGGTGVSIPGTFR 158

Query: 132 VVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHLGEFLALTGARLNGKELVAAGLATHFV 191
           V T++T+F+TPE  IGFH D G SF  S LPG LGE+L LTG +L+G E++A GLATH++
Sbjct: 159 VATDRTIFATPETIIGFHPDAGASFNLSHLPGRLGEYLGLTGLKLSGAEMLACGLATHYI 218

Query: 192 PSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKETVAEI 251
            SE++P +E++L  L T D   V+S +E+ +E    +   V+ +  ++++CFS +TV EI
Sbjct: 219 RSEEVPVMEEQLKKLLTDDPSVVESCLEKCAEVAHPEKTGVIRRIDLLEKCFSHDTVEEI 278

Query: 252 IKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINI 311
           I S E EA +  + W    L+ LK+SSP  LK+ LRS+REGR Q+L +CL +E+R+++  
Sbjct: 279 IDSLEIEASRRKDTWCITTLRRLKESSPLSLKVALRSIREGRLQTLDQCLIREYRMSLQG 338

Query: 312 LRAIISADIYEGIRALTIEKDNAPKWDPPTLDKVDDDKVDLVF---QPFGEDLELQIPEN 368
           L   +S +  EG+RA  I+KD APKWDPP+L+KV +D VD  F    P   DL+L +   
Sbjct: 339 LIGPMSGNFCEGVRARLIDKDEAPKWDPPSLEKVSEDMVDDYFCALTPTEPDLDLPVKLR 398

Query: 369 EN 370
           E+
Sbjct: 399 ES 400

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: .

EC: -

>sp|Q5ZJ60|HIBCH_CHICK 3-hydroxyisobutyryl-CoA hydrolase, mitochondrial OS=Gallus gallus GN=HIBCH PE=2 SV=1

 Score =  246 bits (627), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 142/356 (39%), Positives = 211/356 (59%), Gaps = 13/356 (3%)

Query: 14  VLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVG-RAFSAG 72
           VL ++ G   ++TLNRP+ LN +S K++  +   ++ WE+D +  L+I+KG G +AF AG
Sbjct: 37  VLLQKQGGAGIITLNRPKVLNALSFKMIQQIYPQIKAWEQDPETFLIIIKGTGEKAFCAG 96

Query: 73  GDLKMFYDGRNSKDSCLEVVYRM-YWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFS 131
           GD++   D   + D+     +R  Y L + I T KK  VAL  GITMGGG  L V   F 
Sbjct: 97  GDVRAIADAGKAGDTMTRDYFREEYRLDNAIGTCKKPYVALIDGITMGGGVGLSVHGHFR 156

Query: 132 VVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHLGEFLALTGARLNGKELVAAGLATHFV 191
           V TEKTVF+ PE +IG   D G  +   RL G +G  LALTG RL G++++ AG+ATHFV
Sbjct: 157 VATEKTVFAMPETAIGLFPDVGGGYFLPRLSGKIGHLLALTGFRLKGRDVLKAGIATHFV 216

Query: 192 PSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQS--VLNKQ-SIIDECFSKETV 248
            S KLPELEK LI L +  +  +   +  +    ++D +   VL++    I+  FS  ++
Sbjct: 217 ESGKLPELEKDLIALKSPSKENIADLLNSYHMQTKIDQEKEFVLDEHMERINSIFSANSM 276

Query: 249 AEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLT 308
            EI++  +    ++G+ +    L+ + K SPT LK+TLR +REG   SL +    E+RL+
Sbjct: 277 EEIVQKLK----QDGSPFATKQLEAINKMSPTSLKLTLRQLREGATMSLQDVFTMEYRLS 332

Query: 309 INILRAIISADIYEGIRALTIEKDNAPKWDPPTLDKVDDDKVDLVFQPFG-EDLEL 363
              +R     D YEG+RA+ I+KD +P+W P  L++V D+ VD  F+P G  DL+L
Sbjct: 333 QACMRG---HDFYEGVRAVLIDKDQSPRWKPAALEEVSDEFVDNCFKPLGNNDLKL 385

Hydrolyzes 3-hydroxyisobutyryl-CoA (HIBYL-CoA), a saline catabolite. Has high activity toward isobutyryl-CoA. Could be an isobutyryl-CoA dehydrogenase that functions in valine catabolism. Also hydrolyzes 3-hydroxypropanoyl-CoA.

Gallus gallus (taxid: 9031)

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: .

EC: 4

>sp|Q58EB4|HIBCH_DANRE 3-hydroxyisobutyryl-CoA hydrolase, mitochondrial OS=Danio rerio GN=hibch PE=2 SV=1

 Score =  243 bits (621), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 144/356 (40%), Positives = 207/356 (58%), Gaps = 13/356 (3%)

Query: 14  VLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVG-RAFSAG 72
           VL E++G   ++TLNRP+ LN ++  ++  +   L+KW+KD +  +VI+KG G +AF AG
Sbjct: 34  VLFEKVGKAGVITLNRPKALNALTLNMIRHIYPQLKKWDKDSETDIVIIKGAGEKAFCAG 93

Query: 73  GDLKMFYDGRNSKDSCLEVVYRM-YWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFS 131
           GD++   +   + +   +V +R  Y L + I TY+K  VAL +GITMGGG  L V  +F 
Sbjct: 94  GDIRAIAEAGKAGNLLSQVFFREEYILNNTIGTYQKPYVALINGITMGGGVGLSVHGQFR 153

Query: 132 VVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHLGEFLALTGARLNGKELVAAGLATHFV 191
           V TEKT+F+ PE  IG   D G  +   RL G LG FLALTG RL G+++   G+ATHFV
Sbjct: 154 VATEKTLFAMPETGIGLFPDVGGGYFLPRLQGKLGLFLALTGFRLKGRDVQRVGVATHFV 213

Query: 192 PSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQS--VLNKQS-IIDECFSKETV 248
            SEK+  LEK L+ L +     V   ++ + E   LD +   VL +Q+  ID  FS  +V
Sbjct: 214 QSEKIESLEKDLVDLKSPSISDVAQLLDSYQEQSHLDAEKPFVLQEQTEAIDRLFSAGSV 273

Query: 249 AEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLT 308
            EI+++ +    K+G+ +     + L K SPT LK+T R + EG   SL E    E+RL+
Sbjct: 274 EEIVENLK----KDGSAFALKQAETLAKMSPTSLKLTFRQIEEGARMSLQEVFMMEYRLS 329

Query: 309 INILRAIISADIYEGIRALTIEKDNAPKWDPPTLDKVDDDKVDLVFQPFGE-DLEL 363
              +      D YEG+RA+ I+KD +PKW P TL  V +  VD  F    E DL+L
Sbjct: 330 QACMNG---HDFYEGVRAVLIDKDQSPKWKPSTLAGVSEQFVDKCFSSLDERDLKL 382

Hydrolyzes 3-hydroxyisobutyryl-CoA (HIBYL-CoA), a saline catabolite. Has high activity toward isobutyryl-CoA. Could be an isobutyryl-CoA dehydrogenase that functions in valine catabolism. Also hydrolyzes 3-hydroxypropanoyl-CoA.

Danio rerio (taxid: 7955)

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: .

EC: 4

>sp|Q6NVY1|HIBCH_HUMAN 3-hydroxyisobutyryl-CoA hydrolase, mitochondrial OS=Homo sapiens GN=HIBCH PE=1 SV=2

 Score =  242 bits (617), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 138/350 (39%), Positives = 213/350 (60%), Gaps = 12/350 (3%)

Query: 14  VLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVG-RAFSAG 72
           VL E+ G   ++TLNRP+ LN ++  ++  +   L+KWE+D +  L+I+KG G +AF AG
Sbjct: 38  VLLEKKGCTGVITLNRPKFLNALTLNMIRQIYPQLKKWEQDPETFLIIIKGAGGKAFCAG 97

Query: 73  GDLKMFYDGRNSKDSCLEVVYRM-YWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFS 131
           GD+++  +   +K     V +R  Y L + + + +K  VAL HGITMGGG  L V  +F 
Sbjct: 98  GDIRVISEAEKAKQKIAPVFFREEYMLNNAVGSCQKPYVALIHGITMGGGVGLSVHGQFR 157

Query: 132 VVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHLGEFLALTGARLNGKELVAAGLATHFV 191
           V TEK +F+ PE +IG   D G  +   RL G LG FLALTG RL G+++  AG+ATHFV
Sbjct: 158 VATEKCLFAMPETAIGLFPDVGGGYFLPRLQGKLGYFLALTGFRLKGRDVYRAGIATHFV 217

Query: 192 PSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLD-GQSVLNKQSI--IDECFSKETV 248
            SEKL  LE+ L+ L +  +  + S +E +  + ++D  +S + ++ +  I+ CFS  TV
Sbjct: 218 DSEKLAMLEEDLLALKSPSKENIASVLENYHTESKIDRDKSFILEEHMDKINSCFSANTV 277

Query: 249 AEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLT 308
            EII++ +    ++G+ +    LK + K SPT LKITLR + EG  ++L E L  E+RL+
Sbjct: 278 EEIIENLQ----QDGSSFALEQLKVINKMSPTSLKITLRQLMEGSSKTLQEVLTMEYRLS 333

Query: 309 INILRAIISADIYEGIRALTIEKDNAPKWDPPTLDKVDDDKVDLVFQPFG 358
              +R     D +EG+RA+ I+KD +PKW P  L +V ++ ++  F+  G
Sbjct: 334 QACMRG---HDFHEGVRAVLIDKDQSPKWKPADLKEVTEEDLNNHFKSLG 380

Hydrolyzes 3-hydroxyisobutyryl-CoA (HIBYL-CoA), a saline catabolite. Has high activity toward isobutyryl-CoA. Could be an isobutyryl-CoA dehydrogenase that functions in valine catabolism. Also hydrolyzes 3-hydroxypropanoyl-CoA.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: .

EC: 4

>sp|Q28FR6|HIBCH_XENTR 3-hydroxyisobutyryl-CoA hydrolase, mitochondrial OS=Xenopus tropicalis GN=hibch PE=2 SV=1

 Score =  229 bits (584), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 138/350 (39%), Positives = 197/350 (56%), Gaps = 13/350 (3%)

Query: 20  GNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVG-RAFSAGGDLKMF 78
           G   ++TLNRP+ LN ++  ++ L+   L  WE+D +  LVI+KGVG +AF AGGD++  
Sbjct: 43  GCAGVITLNRPKALNALNLGMIRLIYPQLGLWEEDPETYLVIIKGVGGKAFCAGGDIRAV 102

Query: 79  YDGRNSKDSCLEVVYRM-YWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKT 137
            D   + D   +  +R  Y L + I TYKK  VAL  GITMGGG  L V   F V +E T
Sbjct: 103 TDAGKAGDRLAQDFFREEYILNNAIGTYKKPYVALIDGITMGGGVGLSVHGHFRVASENT 162

Query: 138 VFSTPEASIGFHTDCGFSFIHSRLPGHLGEFLALTGARLNGKELVAAGLATHFVPSEKLP 197
           +F+ PE +IG   D G  +   RLPG LG +LALTG RL G ++  AG+ATHFV SEK+P
Sbjct: 163 LFAMPETAIGLFPDVGGGYFLPRLPGKLGLYLALTGFRLKGSDVQKAGIATHFVESEKIP 222

Query: 198 ELEKRLIGLNTGDEIAVKSAIEEFSED--VQLDGQSVLNKQ-SIIDECFSKETVAEIIKS 254
            LE+ L+ +    +  V   ++ +        D   VL +    I+  FS  +V  II++
Sbjct: 223 SLEQDLVAMKCPSKENVADVLDSYHNKSYAAQDKPFVLAEHLDKINSLFSASSVEAIIEN 282

Query: 255 FEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRA 314
                  +G+ +    L+ L   SPT LKIT R ++EG   SL E L  E+RL+   ++ 
Sbjct: 283 LRC----DGSSFALKQLQTLSTMSPTSLKITFRQLKEGSSMSLQEVLTMEYRLSQACMKG 338

Query: 315 IISADIYEGIRALTIEKDNAPKWDPPTLDKVDDDKVDLVFQPFGE-DLEL 363
               D YEG+RA+ I+K+   KW+P  L++V DD +D  F   G  DL+L
Sbjct: 339 Y---DFYEGVRAVLIDKNQNAKWNPELLEEVTDDYIDSYFTSLGNSDLKL 385

Hydrolyzes 3-hydroxyisobutyryl-CoA (HIBYL-CoA), a saline catabolite. Has high activity toward isobutyryl-CoA. Could be an isobutyryl-CoA dehydrogenase that functions in valine catabolism. Also hydrolyzes 3-hydroxypropanoyl-CoA.

Xenopus tropicalis (taxid: 8364)

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: .

EC: 4

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	392
224062667	391	predicted protein [Populus trichocarpa]	0.997	1.0	0.826	0.0
255571400	389	Enoyl-CoA hydratase, mitochondrial precu	0.992	1.0	0.815	0.0
359485351	389	PREDICTED: 3-hydroxyisobutyryl-CoA hydro	0.992	1.0	0.811	0.0
414883544	383	TPA: hypothetical protein ZEAMMB73_07097	0.974	0.997	0.814	0.0
302143531	389	unnamed protein product [Vitis vinifera]	0.992	1.0	0.806	0.0
388512395	386	unknown [Lotus japonicus]	0.977	0.992	0.757	1e-175
356526975	385	PREDICTED: 3-hydroxyisobutyryl-CoA hydro	0.956	0.974	0.768	1e-173
358248804	401	uncharacterized protein LOC100818188 [Gl	0.956	0.935	0.765	1e-173
449453774	387	PREDICTED: 3-hydroxyisobutyryl-CoA hydro	0.928	0.940	0.771	1e-170
30679729	387	3-hydroxyisobutyryl-CoA hydrolase-like p	0.964	0.976	0.741	1e-168

>gi|224062667|ref|XP_002300870.1| predicted protein [Populus trichocarpa] gi|118483524|gb|ABK93660.1| unknown [Populus trichocarpa] gi|222842596|gb|EEE80143.1| predicted protein [Populus trichocarpa]

 Score =  674 bits (1739), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 324/392 (82%), Positives = 356/392 (90%), Gaps = 1/392 (0%)

Query: 1   MAQGVVKNPDEQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLV 60
           MAQ VV NP+EQVVLGEEI +VRL+TLNRPRQLNVISSKVVSLLA++LEK EKDD  KL+
Sbjct: 1   MAQEVV-NPEEQVVLGEEIDHVRLITLNRPRQLNVISSKVVSLLADFLEKLEKDDNTKLI 59

Query: 61  IVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGG 120
           ++KG GRAFSAGGDL+MFYDGR SKDSCLEVVYRMYWLCHHIHTYKKTQVAL HGI+MGG
Sbjct: 60  LIKGAGRAFSAGGDLRMFYDGRTSKDSCLEVVYRMYWLCHHIHTYKKTQVALVHGISMGG 119

Query: 121 GASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHLGEFLALTGARLNGKE 180
           GASLMVP+KFSVVTEKTVFSTPEASIGFHTDCGFS+I SRLPGHLGEFLALTGARLNGKE
Sbjct: 120 GASLMVPMKFSVVTEKTVFSTPEASIGFHTDCGFSYILSRLPGHLGEFLALTGARLNGKE 179

Query: 181 LVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIID 240
           LVAAG+ATHFVP EKLPELEKRLI LN+GDE AVKS IEEFS D+QLD  SVLNK SIID
Sbjct: 180 LVAAGMATHFVPFEKLPELEKRLISLNSGDENAVKSVIEEFSVDIQLDEDSVLNKLSIID 239

Query: 241 ECFSKETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAEC 300
           ECFSK+TV +IIKSF  EA K+GNGWIG +LKGLK+SSPTGLKITLRS+REGR+Q+LAEC
Sbjct: 240 ECFSKDTVVDIIKSFGLEASKDGNGWIGAILKGLKRSSPTGLKITLRSIREGRKQTLAEC 299

Query: 301 LKKEFRLTINILRAIISADIYEGIRALTIEKDNAPKWDPPTLDKVDDDKVDLVFQPFGED 360
           L+KEFRLT+NILR  ISAD+YEGIRALTI+KDNAPKWDPPT D+VDD KVDLVFQPF ++
Sbjct: 300 LEKEFRLTMNILRTTISADVYEGIRALTIDKDNAPKWDPPTCDEVDDSKVDLVFQPFKDN 359

Query: 361 LELQIPENENCRWDGKYENSAYATSQVTAEAK 392
           LELQIPENE  RW+GKYE+SAYA    T  AK
Sbjct: 360 LELQIPENEKHRWEGKYEHSAYAALNATEIAK 391

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255571400|ref|XP_002526648.1| Enoyl-CoA hydratase, mitochondrial precursor, putative [Ricinus communis] gi|223534015|gb|EEF35736.1| Enoyl-CoA hydratase, mitochondrial precursor, putative [Ricinus communis]

 Score =  666 bits (1719), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 318/390 (81%), Positives = 356/390 (91%), Gaps = 1/390 (0%)

Query: 1   MAQGVVKNPDEQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLV 60
           MAQ VV NP+EQVVLGEEI +VRL+TLNRPRQLNVISSKVVSLLA++ EKWEKDD A+L+
Sbjct: 1   MAQEVV-NPEEQVVLGEEISHVRLITLNRPRQLNVISSKVVSLLADFFEKWEKDDNAELI 59

Query: 61  IVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGG 120
           ++KG GRAFSAGGDLKMFYDGR SKDSCL+VVYRMYWLC+HIHTYKKTQVAL +GI+MGG
Sbjct: 60  LIKGAGRAFSAGGDLKMFYDGRTSKDSCLDVVYRMYWLCYHIHTYKKTQVALVNGISMGG 119

Query: 121 GASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHLGEFLALTGARLNGKE 180
           GASLMVP+KFSVVTEKTVF+TPEASIGFHTDCGFS++ S LPG+LGEFLALTGARLNGKE
Sbjct: 120 GASLMVPMKFSVVTEKTVFATPEASIGFHTDCGFSYMLSHLPGNLGEFLALTGARLNGKE 179

Query: 181 LVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIID 240
           LVAAGLATHFVPSEK+PELEK LI LN+GDE AVKS +EEFS DVQL+ +S+LNK SII+
Sbjct: 180 LVAAGLATHFVPSEKMPELEKHLISLNSGDEKAVKSVLEEFSIDVQLEKESILNKLSIIE 239

Query: 241 ECFSKETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAEC 300
           +CFSK +V +IIK+FEAEAG EGN WIG VLKGLK+SSPTGLKITLRS+REGR+Q LAEC
Sbjct: 240 KCFSKHSVGDIIKTFEAEAGNEGNEWIGSVLKGLKRSSPTGLKITLRSIREGRKQGLAEC 299

Query: 301 LKKEFRLTINILRAIISADIYEGIRALTIEKDNAPKWDPPTLDKVDDDKVDLVFQPFGED 360
           LKKEFRLT+NILR  ISAD+YEGIRALTI+KDNAPKWDPPT DKVDD KVDLVFQPF ED
Sbjct: 300 LKKEFRLTMNILRTTISADVYEGIRALTIDKDNAPKWDPPTCDKVDDAKVDLVFQPFKED 359

Query: 361 LELQIPENENCRWDGKYENSAYATSQVTAE 390
           LELQ PE E CRW GKYENS+YAT +VT +
Sbjct: 360 LELQTPEIEACRWGGKYENSSYATLKVTQQ 389

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359485351|ref|XP_002279162.2| PREDICTED: 3-hydroxyisobutyryl-CoA hydrolase-like protein 5-like [Vitis vinifera]

 Score =  664 bits (1713), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 318/392 (81%), Positives = 356/392 (90%), Gaps = 3/392 (0%)

Query: 1   MAQGVVKNPDEQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLV 60
           M Q  VK  DEQVVLGEEIGN+R++TLNRPRQLNVISSKVVSLLAEYLEKWEKDD+A+LV
Sbjct: 1   MGQEGVKR-DEQVVLGEEIGNIRVITLNRPRQLNVISSKVVSLLAEYLEKWEKDDKAELV 59

Query: 61  IVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGG 120
           I+KGVGRAFSAGGDLKMFYDGR  +DSCLEVVYRMYWLC+HIH+YKKTQVAL HGI+MGG
Sbjct: 60  IIKGVGRAFSAGGDLKMFYDGREPRDSCLEVVYRMYWLCYHIHSYKKTQVALVHGISMGG 119

Query: 121 GASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHLGEFLALTGARLNGKE 180
           GASLMVP+KFSVVTEKTVF+TPEA+IGFHTDCGFS++ S LPGHLGEF+ALTGARLNGKE
Sbjct: 120 GASLMVPMKFSVVTEKTVFATPEATIGFHTDCGFSYMLSHLPGHLGEFIALTGARLNGKE 179

Query: 181 LVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIID 240
           LV  GLATH+VPSEK+PELEKRL+ LN+GD  A+KSAIEEFS DV++D  SVLNKQS I+
Sbjct: 180 LVTVGLATHYVPSEKMPELEKRLMCLNSGDRNAIKSAIEEFSLDVKVDEDSVLNKQSTIN 239

Query: 241 ECFSKETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAEC 300
           ECFSK++V EIIKSFE EA KEGN WIGP+LK LK+SSPTGLKITLRS+REGR Q+LAE 
Sbjct: 240 ECFSKDSVEEIIKSFETEARKEGNAWIGPMLKSLKRSSPTGLKITLRSIREGRNQTLAES 299

Query: 301 LKKEFRLTINILRAIISADIYEGIRALTIEKDNAPKWDPPTLDKVDDDKVDLVFQPFGED 360
           LKKEFRLT+NILR  IS D+YEGIRALTI+KDNAPKWDPPTLDKV+ +KVD+VFQPF E+
Sbjct: 300 LKKEFRLTMNILRTTISNDVYEGIRALTIDKDNAPKWDPPTLDKVNGEKVDIVFQPFKEE 359

Query: 361 LELQIPENENCRWDGKYENSAYATSQVTAEAK 392
           LELQIPE E CRWDGKYE+SAYA  QVT EAK
Sbjct: 360 LELQIPEKEECRWDGKYEHSAYA--QVTEEAK 389

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|414883544|tpg|DAA59558.1| TPA: hypothetical protein ZEAMMB73_070975 [Zea mays]

 Score =  662 bits (1709), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 312/383 (81%), Positives = 351/383 (91%), Gaps = 1/383 (0%)

Query: 1   MAQGVVKNPDEQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLV 60
           MA+ VV NPDE VV+GEE+ +VR++TLNRPR LNVISSKVVSLLA+YLEKWE+D+QA+L+
Sbjct: 1   MAKEVV-NPDELVVVGEELDHVRIITLNRPRHLNVISSKVVSLLAKYLEKWERDEQAQLI 59

Query: 61  IVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGG 120
           ++KG GRAFSAGGDLKMFY+GR SKDSCLEVVYRMYWLC+HIHTYKKTQVAL  GI+MGG
Sbjct: 60  LIKGAGRAFSAGGDLKMFYEGRKSKDSCLEVVYRMYWLCYHIHTYKKTQVALVQGISMGG 119

Query: 121 GASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHLGEFLALTGARLNGKE 180
           GASLMVP+KFSVVTEKTVF+TPEASIGFH DCGFS++ S LPGHLGE+LALTGARLNGKE
Sbjct: 120 GASLMVPMKFSVVTEKTVFATPEASIGFHVDCGFSYMLSHLPGHLGEYLALTGARLNGKE 179

Query: 181 LVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIID 240
           LV AGLATHFVP EKLPELEKRLI LN GDE AVK+ IEEFS  VQLD  S+LNK+ IID
Sbjct: 180 LVVAGLATHFVPLEKLPELEKRLISLNVGDENAVKATIEEFSLHVQLDEDSILNKKQIID 239

Query: 241 ECFSKETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAEC 300
           ECFSK+TVA+IIKSFE EA KEGN WIGPVLKGLK+SSPTGLKITLRS+REGR+Q+LAE 
Sbjct: 240 ECFSKDTVADIIKSFEVEASKEGNEWIGPVLKGLKRSSPTGLKITLRSIREGRKQTLAES 299

Query: 301 LKKEFRLTINILRAIISADIYEGIRALTIEKDNAPKWDPPTLDKVDDDKVDLVFQPFGED 360
           LKKEFRLT+NILR  ISAD+YEGIRALTI+KDNAPKWDPP LD+VDD+K+DLVFQPF ED
Sbjct: 300 LKKEFRLTMNILRTTISADVYEGIRALTIDKDNAPKWDPPILDQVDDEKIDLVFQPFAED 359

Query: 361 LELQIPENENCRWDGKYENSAYA 383
           LEL++PE E+CRWDGKYENSAYA
Sbjct: 360 LELKVPEQEDCRWDGKYENSAYA 382

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302143531|emb|CBI22092.3| unnamed protein product [Vitis vinifera]

 Score =  662 bits (1708), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 316/392 (80%), Positives = 355/392 (90%), Gaps = 3/392 (0%)

Query: 1   MAQGVVKNPDEQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLV 60
           M Q  VK  DEQVVLGEEIGN+R++TLNRPRQLNVISSKVVSLLAEYLEKWEKDD+A+LV
Sbjct: 1   MGQEGVKR-DEQVVLGEEIGNIRVITLNRPRQLNVISSKVVSLLAEYLEKWEKDDKAELV 59

Query: 61  IVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGG 120
           I+K +GRAFSAGGDLKMFYDGR  +DSCLEVVYRMYWLC+HIH+YKKTQVAL HGI+MGG
Sbjct: 60  IIKAIGRAFSAGGDLKMFYDGREPRDSCLEVVYRMYWLCYHIHSYKKTQVALVHGISMGG 119

Query: 121 GASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHLGEFLALTGARLNGKE 180
           GASLMVP+KFSVVTEKTVF+TPEA+IGFHTDCGFS++ S LPGHLGEF+ALTGARLNGKE
Sbjct: 120 GASLMVPMKFSVVTEKTVFATPEATIGFHTDCGFSYMLSHLPGHLGEFIALTGARLNGKE 179

Query: 181 LVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIID 240
           LV  GLATH+VPSEK+PELEKRL+ LN+GD  A+KSAIEEFS DV++D  SVLNKQS I+
Sbjct: 180 LVTVGLATHYVPSEKMPELEKRLMCLNSGDRNAIKSAIEEFSLDVKVDEDSVLNKQSTIN 239

Query: 241 ECFSKETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAEC 300
           ECFSK++V EIIKSFE EA KEGN WIGP+LK LK+SSPTGLKITLRS+REGR Q+LAE 
Sbjct: 240 ECFSKDSVEEIIKSFETEARKEGNAWIGPMLKSLKRSSPTGLKITLRSIREGRNQTLAES 299

Query: 301 LKKEFRLTINILRAIISADIYEGIRALTIEKDNAPKWDPPTLDKVDDDKVDLVFQPFGED 360
           LKKEFRLT+NILR  IS D+YEGIRALTI+KDNAPKWDPPTLDKV+ +KVD+VFQPF E+
Sbjct: 300 LKKEFRLTMNILRTTISNDVYEGIRALTIDKDNAPKWDPPTLDKVNGEKVDIVFQPFKEE 359

Query: 361 LELQIPENENCRWDGKYENSAYATSQVTAEAK 392
           LELQIPE E CRWDGKYE+SAYA  QVT EAK
Sbjct: 360 LELQIPEKEECRWDGKYEHSAYA--QVTEEAK 389

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388512395|gb|AFK44259.1| unknown [Lotus japonicus]

 Score =  620 bits (1599), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 290/383 (75%), Positives = 338/383 (88%)

Query: 1   MAQGVVKNPDEQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLV 60
           MA      P EQVVLGEE+ +VRL+TLNRP+QLN IS ++VSLLA YLEKWEKDD+A L+
Sbjct: 1   MAPTADTTPHEQVVLGEEVDHVRLITLNRPKQLNAISPELVSLLAAYLEKWEKDDEAYLI 60

Query: 61  IVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGG 120
           I+KG GRAF AGGDL++FYDGR +KDSCLEVVYR YWLC+HI TYKKTQVAL HGI+MGG
Sbjct: 61  IIKGAGRAFCAGGDLRVFYDGRKTKDSCLEVVYRFYWLCYHIKTYKKTQVALVHGISMGG 120

Query: 121 GASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHLGEFLALTGARLNGKE 180
           GA+LM P+KFSVVTEKTVF+TPEAS GFHTDCGFS+ HSRLPGHLGE+LAL+GARLNGKE
Sbjct: 121 GAALMAPMKFSVVTEKTVFATPEASFGFHTDCGFSYNHSRLPGHLGEYLALSGARLNGKE 180

Query: 181 LVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIID 240
           LVAAGLATHFV SE++ ELEKRLI  N+GDE AV+S IEEFS +V++D +S+LNK+SIID
Sbjct: 181 LVAAGLATHFVSSEQIDELEKRLISSNSGDENAVRSVIEEFSLEVKIDEESILNKKSIID 240

Query: 241 ECFSKETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAEC 300
           ECFSK++V EIIKS E EA KEGNGWIG VLKG+K+SSPT LKI LRSVREGR Q+L+EC
Sbjct: 241 ECFSKDSVEEIIKSLETEAQKEGNGWIGAVLKGMKRSSPTALKIALRSVREGRNQTLSEC 300

Query: 301 LKKEFRLTINILRAIISADIYEGIRALTIEKDNAPKWDPPTLDKVDDDKVDLVFQPFGED 360
           LKKEF LTINILR +IS D+YEGIRALTI+KDN+PKW+PP+LDKV+D K+DL+FQPF +D
Sbjct: 301 LKKEFGLTINILRTVISEDMYEGIRALTIDKDNSPKWEPPSLDKVEDGKLDLIFQPFDKD 360

Query: 361 LELQIPENENCRWDGKYENSAYA 383
           LELQIPE E  RWDG+YE+SAYA
Sbjct: 361 LELQIPEREENRWDGRYESSAYA 383

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356526975|ref|XP_003532090.1| PREDICTED: 3-hydroxyisobutyryl-CoA hydrolase-like protein 5-like [Glycine max]

 Score =  614 bits (1583), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 288/375 (76%), Positives = 334/375 (89%)

Query: 9   PDEQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRA 68
           PDEQVV+GEEI +VR++TLNRPRQLN IS ++VSLLA YLEKWEKD++A+LVI+KG GRA
Sbjct: 8   PDEQVVVGEEIEHVRVITLNRPRQLNAISPELVSLLATYLEKWEKDEEAELVIIKGSGRA 67

Query: 69  FSAGGDLKMFYDGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPL 128
           F AGGDL++FYDGR  KD+CLEVVYR YWLC+HI TYKKTQVAL HGI+MGGGA+LMVPL
Sbjct: 68  FCAGGDLRVFYDGRKIKDACLEVVYRFYWLCYHISTYKKTQVALVHGISMGGGAALMVPL 127

Query: 129 KFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHLGEFLALTGARLNGKELVAAGLAT 188
           KFSVVTEKTVF+TPEAS GFH DCGFS+ HSRLPGHLGE+LALTG RL+GKE+VAAGLAT
Sbjct: 128 KFSVVTEKTVFATPEASFGFHIDCGFSYYHSRLPGHLGEYLALTGGRLSGKEIVAAGLAT 187

Query: 189 HFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKETV 248
           HFVP EK+ ELE RLI LN+GDE AV+S IEEFS +V+LD +S+LNKQSII ECFSK++V
Sbjct: 188 HFVPFEKIVELENRLISLNSGDENAVRSVIEEFSSEVKLDEESILNKQSIIKECFSKDSV 247

Query: 249 AEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLT 308
            EIIKS EAEA  +GN WIG VLKG+K+SSPT LKI LRSVREGR Q+L+ECLKKEFRLT
Sbjct: 248 EEIIKSLEAEANNKGNVWIGAVLKGMKRSSPTALKIALRSVREGRNQTLSECLKKEFRLT 307

Query: 309 INILRAIISADIYEGIRALTIEKDNAPKWDPPTLDKVDDDKVDLVFQPFGEDLELQIPEN 368
           +NILR  IS D+YEGIRALTI+KDNAPKW+P +LDKV+D K+DL+FQPF ++LELQIPE+
Sbjct: 308 MNILRTTISEDMYEGIRALTIDKDNAPKWEPSSLDKVEDGKLDLIFQPFEKNLELQIPES 367

Query: 369 ENCRWDGKYENSAYA 383
           E  RWDGKYENSAYA
Sbjct: 368 EEYRWDGKYENSAYA 382

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358248804|ref|NP_001239687.1| uncharacterized protein LOC100818188 [Glycine max] gi|255642197|gb|ACU21363.1| unknown [Glycine max]

 Score =  613 bits (1580), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 287/375 (76%), Positives = 334/375 (89%)

Query: 9   PDEQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRA 68
           PDEQVV+GEEI +VR+VTLNRPRQLN IS ++VS LA YLEKWEKD++A+LVI+KG GRA
Sbjct: 24  PDEQVVVGEEIEHVRVVTLNRPRQLNAISPELVSQLATYLEKWEKDEKAELVIIKGAGRA 83

Query: 69  FSAGGDLKMFYDGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPL 128
           F AGGDL++FYDGR  KD+CLEVVYR YWLC+HI TYKKTQVAL HGI+MGGGA+LMVPL
Sbjct: 84  FCAGGDLRVFYDGRKIKDACLEVVYRFYWLCYHISTYKKTQVALVHGISMGGGAALMVPL 143

Query: 129 KFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHLGEFLALTGARLNGKELVAAGLAT 188
           KFSVVTEKTVF+TPEAS GFHTDCGFS+ HSRLPG+LGE+LALTG RL+GKE+VA G+AT
Sbjct: 144 KFSVVTEKTVFATPEASFGFHTDCGFSYYHSRLPGYLGEYLALTGGRLSGKEIVAVGVAT 203

Query: 189 HFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKETV 248
           HFVP EK+ ELEKRLI LN+GDE AV+S IEEFS +V+LD +S+LNKQSII+ECFSK+++
Sbjct: 204 HFVPYEKIVELEKRLISLNSGDENAVRSVIEEFSSEVKLDEESILNKQSIINECFSKDSL 263

Query: 249 AEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLT 308
            EIIKS EAEA KEGNGWI  VLKG+K+SSPT LKI LRSVREGR Q+L ECLKKEFRLT
Sbjct: 264 EEIIKSLEAEAYKEGNGWIDAVLKGMKRSSPTALKIALRSVREGRNQTLPECLKKEFRLT 323

Query: 309 INILRAIISADIYEGIRALTIEKDNAPKWDPPTLDKVDDDKVDLVFQPFGEDLELQIPEN 368
           +NILR  IS D+YEGIRALTI+KDN PKW+P +LDKV+D K+DL+FQPF ++LELQIPE+
Sbjct: 324 MNILRTTISKDMYEGIRALTIDKDNTPKWEPSSLDKVEDGKLDLIFQPFEKNLELQIPES 383

Query: 369 ENCRWDGKYENSAYA 383
           E  RWDGKYENSAYA
Sbjct: 384 EEYRWDGKYENSAYA 398

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449453774|ref|XP_004144631.1| PREDICTED: 3-hydroxyisobutyryl-CoA hydrolase-like protein 5-like [Cucumis sativus] gi|449519142|ref|XP_004166594.1| PREDICTED: 3-hydroxyisobutyryl-CoA hydrolase-like protein 5-like [Cucumis sativus]

 Score =  605 bits (1559), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 281/364 (77%), Positives = 324/364 (89%)

Query: 21  NVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYD 80
           N RL+T NRPRQLNVISSKVVSLLA YLEKWEKDD+AKL+I KG GRAFSAGGDL+MFY+
Sbjct: 20  NARLITFNRPRQLNVISSKVVSLLAGYLEKWEKDDEAKLIIFKGAGRAFSAGGDLRMFYE 79

Query: 81  GRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFS 140
           GRN KDSCLEVVYRMYWLC+H+HTYKK  VAL HGI MGGGAS MVP+KFSVVTEKTVF+
Sbjct: 80  GRNKKDSCLEVVYRMYWLCYHVHTYKKIHVALVHGIAMGGGASFMVPMKFSVVTEKTVFA 139

Query: 141 TPEASIGFHTDCGFSFIHSRLPGHLGEFLALTGARLNGKELVAAGLATHFVPSEKLPELE 200
           TPEASIGFHTDCGFS++ SRLPG+LGEFLALTG+RLNGKELVA G ATHFVPSEKL ELE
Sbjct: 140 TPEASIGFHTDCGFSYMFSRLPGYLGEFLALTGSRLNGKELVAVGFATHFVPSEKLDELE 199

Query: 201 KRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKETVAEIIKSFEAEAG 260
            RL+ LN+ DE +V+SAIE+FS +VQLD  SVL ++S+ID+CFSKETV EII SFEAEA 
Sbjct: 200 TRLVSLNSHDENSVRSAIEDFSLEVQLDEDSVLKRKSVIDKCFSKETVEEIITSFEAEAS 259

Query: 261 KEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADI 320
            EGNGWI PVLKGLK+SSPTGLKITL+S+R+GR  +L ECLKKEFRLT+NILR +IS D+
Sbjct: 260 VEGNGWIVPVLKGLKRSSPTGLKITLKSIRKGRLLTLQECLKKEFRLTMNILRTLISGDV 319

Query: 321 YEGIRALTIEKDNAPKWDPPTLDKVDDDKVDLVFQPFGEDLELQIPENENCRWDGKYENS 380
           YEGIRALTI+KDNAPKWDPP+L+KV+DD+++ VFQP+GEDLELQ+P ++  RW GKYE+S
Sbjct: 320 YEGIRALTIDKDNAPKWDPPSLEKVNDDRLNEVFQPYGEDLELQVPIDDEQRWSGKYEDS 379

Query: 381 AYAT 384
            Y T
Sbjct: 380 IYGT 383

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30679729|ref|NP_172142.2| 3-hydroxyisobutyryl-CoA hydrolase-like protein 5 [Arabidopsis thaliana] gi|292630834|sp|Q9SHJ8.2|HIBC8_ARATH RecName: Full=3-hydroxyisobutyryl-CoA hydrolase-like protein 5 gi|62320504|dbj|BAD95058.1| 3-hydroxyisobutyryl-coenzyme A hydrolase [Arabidopsis thaliana] gi|63003868|gb|AAY25463.1| At1g06550 [Arabidopsis thaliana] gi|109946425|gb|ABG48391.1| At1g06550 [Arabidopsis thaliana] gi|332189883|gb|AEE28004.1| 3-hydroxyisobutyryl-CoA hydrolase-like protein 5 [Arabidopsis thaliana]

 Score =  597 bits (1540), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 281/379 (74%), Positives = 333/379 (87%), Gaps = 1/379 (0%)

Query: 7   KNPDEQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVG 66
           +N DE VV+GEE G+VRL TLNRPRQLNVIS +VV  LAEYLE WEKDDQ KL+++KG G
Sbjct: 6   QNIDEPVVIGEEKGSVRLTTLNRPRQLNVISPEVVFKLAEYLELWEKDDQTKLILIKGTG 65

Query: 67  RAFSAGGDLKMFYDGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMV 126
           RAFSAGGDLK+FY G+ SKDSCLEVVYRMYWLC+HIHTYKKTQV+L +GI+MGGGA+LMV
Sbjct: 66  RAFSAGGDLKVFYHGQESKDSCLEVVYRMYWLCYHIHTYKKTQVSLVNGISMGGGAALMV 125

Query: 127 PLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHLGEFLALTGARLNGKELVAAGL 186
           P+KFSVVTEKTVF+TPEAS GFHTDCGFS+IHSRLPGHLGEFLALTGARLNGKELVA G+
Sbjct: 126 PMKFSVVTEKTVFATPEASFGFHTDCGFSYIHSRLPGHLGEFLALTGARLNGKELVAIGM 185

Query: 187 ATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKE 246
           ATHFVPS KL +LE RL+ L++GD   V+S IEEFSE V LD  S+LNKQS+I+ECFSKE
Sbjct: 186 ATHFVPSGKLMDLEARLVSLDSGDADVVQSTIEEFSEKVNLDKDSILNKQSVINECFSKE 245

Query: 247 TVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFR 306
           +V +II++FEAEA K+GN WI PV+KGLK+SSPTGLKI L+S+REGR+Q+L++CLKKEFR
Sbjct: 246 SVKQIIQAFEAEASKDGNEWITPVIKGLKRSSPTGLKIVLQSIREGRKQTLSDCLKKEFR 305

Query: 307 LTINILRAIISADIYEGIRALTIEKDNAPKWDPPTLDKVDDDKVDLVFQPF-GEDLELQI 365
           LT+NILR  IS D+YEGIRALTI+KDN+PKW+P TLD+VDD+K++ VF+ F  +D+ELQI
Sbjct: 306 LTLNILRKTISPDMYEGIRALTIDKDNSPKWNPATLDEVDDEKINSVFKLFEDDDIELQI 365

Query: 366 PENENCRWDGKYENSAYAT 384
           PE E  RW GKYE S YA+
Sbjct: 366 PETEENRWGGKYETSGYAS 384

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	392
TAIR|locus:2009180	387	AT1G06550 [Arabidopsis thalian	0.964	0.976	0.722	4.3e-148
TAIR|locus:2152069	378	CHY1 "beta-hydroxyisobutyryl-C	0.931	0.965	0.414	1.1e-73
TAIR|locus:2054437	378	AT2G30660 [Arabidopsis thalian	0.831	0.862	0.432	8e-69
TAIR|locus:2054517	378	AT2G30650 [Arabidopsis thalian	0.831	0.862	0.429	3.5e-68
TAIR|locus:2116797	409	AT4G31810 [Arabidopsis thalian	0.900	0.863	0.408	3.1e-67
ZFIN|ZDB-GENE-050327-29	384	hibch "3-hydroxyisobutyryl-Coe	0.872	0.890	0.397	2.4e-60
UNIPROTKB|Q6NVY1	386	HIBCH "3-hydroxyisobutyryl-CoA	0.877	0.891	0.388	3.5e-59
UNIPROTKB|F1P188	385	HIBCH "3-hydroxyisobutyryl-CoA	0.892	0.909	0.384	1.5e-58
UNIPROTKB|Q5ZJ60	385	HIBCH "3-hydroxyisobutyryl-CoA	0.892	0.909	0.381	3.2e-58
UNIPROTKB|Q2HJ73	386	HIBCH "3-hydroxyisobutyryl-CoA	0.872	0.886	0.380	8.6e-56

TAIR|locus:2009180 AT1G06550 [Arabidopsis thaliana (taxid:3702)]

 Score = 1446 (514.1 bits), Expect = 4.3e-148, P = 4.3e-148
 Identities = 274/379 (72%), Positives = 322/379 (84%)

Query:     7 KNPDEQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVG 66
             +N DE VV+GEE G+VRL TLNRPRQLNVIS +VV  LAEYLE WEKDDQ KL+++KG G
Sbjct:     6 QNIDEPVVIGEEKGSVRLTTLNRPRQLNVISPEVVFKLAEYLELWEKDDQTKLILIKGTG 65

Query:    67 RAFSAGGDLKMFYDGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMV 126
             RAFSAGGDLK+FY G+ SKDSCLEVVYRMYWLC+HIHTYKKTQV+L +GI+MGGGA+LMV
Sbjct:    66 RAFSAGGDLKVFYHGQESKDSCLEVVYRMYWLCYHIHTYKKTQVSLVNGISMGGGAALMV 125

Query:   127 PLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHLGEFLALTGARLNGKELVAAGL 186
             P+KFSVVTEKTVF+TPEAS GFHTDCGFS+IHSRLPGHLGEFLALTGARLNGKELVA G+
Sbjct:   126 PMKFSVVTEKTVFATPEASFGFHTDCGFSYIHSRLPGHLGEFLALTGARLNGKELVAIGM 185

Query:   187 ATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKE 246
             ATHFVPS KL +LE RL+ L++GD   V+S IEEFSE V LD  S+LNKQS+I+ECFSKE
Sbjct:   186 ATHFVPSGKLMDLEARLVSLDSGDADVVQSTIEEFSEKVNLDKDSILNKQSVINECFSKE 245

Query:   247 TVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFR 306
             +V +II++FEAEA K+GN WI PV+KGLK+SSPTGLKI L+S+REGR+Q+L++CLKKEFR
Sbjct:   246 SVKQIIQAFEAEASKDGNEWITPVIKGLKRSSPTGLKIVLQSIREGRKQTLSDCLKKEFR 305

Query:   307 LTINILRAIISADIYEGIRALTIEKDNAPKWDPPTXXXXXXXXXXXXFQPF-GEDLELQI 365
             LT+NILR  IS D+YEGIRALTI+KDN+PKW+P T            F+ F  +D+ELQI
Sbjct:   306 LTLNILRKTISPDMYEGIRALTIDKDNSPKWNPATLDEVDDEKINSVFKLFEDDDIELQI 365

Query:   366 PENENCRWDGKYENSAYAT 384
             PE E  RW GKYE S YA+
Sbjct:   366 PETEENRWGGKYETSGYAS 384

GO:0003824 "catalytic activity" evidence=IEA

GO:0003860 "3-hydroxyisobutyryl-CoA hydrolase activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0006635 "fatty acid beta-oxidation" evidence=ISS

GO:0008152 "metabolic process" evidence=IEA

GO:0080167 "response to karrikin" evidence=IEP

TAIR|locus:2152069 CHY1 "beta-hydroxyisobutyryl-CoA hydrolase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 744 (267.0 bits), Expect = 1.1e-73, P = 1.1e-73
 Identities = 152/367 (41%), Positives = 222/367 (60%)

Query:     6 VKNPDEQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGV 65
             V+   +  VL EE  +VR++TLNRP+QLN +S  ++S L +    +E+D   KLVI+KG 
Sbjct:     3 VEMASQSQVLVEEKSSVRILTLNRPKQLNALSFHMISRLLQLFLAFEEDPSVKLVILKGH 62

Query:    66 GRAFSAGGDLKMFYDGRNSKDSCLEVVY--RMYWLCHHIHTYKKTQVALAHGITMGGGAS 123
             GRAF AGGD+       N  +  L   Y    Y L + + TY K QV++ +GI MGGGA 
Sbjct:    63 GRAFCAGGDVAAVVRDINQGNWRLGANYFSSEYMLNYVMATYSKAQVSILNGIVMGGGAG 122

Query:   124 LMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHLGEFLALTGARLNGKELVA 183
             + V  +F + TE TVF+ PE ++G   D G S+  SRLPG  GE++ LTGARL+G E++A
Sbjct:   123 VSVHGRFRIATENTVFAMPETALGLFPDVGASYFLSRLPGFFGEYVGLTGARLDGAEMLA 182

Query:   184 AGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECF 243
              GLATHFVPS +L  LE  L  +N+ D     + ++ +++  +L  QS   +  +ID CF
Sbjct:   183 CGLATHFVPSTRLTALEADLCRINSNDPTFASTILDAYTQHPRLKQQSAYRRLDVIDRCF 242

Query:   244 SKETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKK 303
             S+ TV EII + E EA +E +GWI   ++ LKK SP  LKI+LRS+REGR Q + +CL +
Sbjct:   243 SRRTVEEIISALEREATQEADGWISATIQALKKGSPASLKISLRSIREGRLQGVGQCLIR 302

Query:   304 EFRLTINILRAIISADIYEGIRALTIEKDNAPKWDPPTXXXXXXXXXXXXFQPFGEDLEL 363
             E+R+  ++++  IS D  EG RA+ ++KD  PKW+P              F+    + +L
Sbjct:   303 EYRMVCHVMKGEISKDFVEGCRAILVDKDKNPKWEPRRLEDMKDSMVEQYFERVEREDDL 362

Query:   364 QIPENEN 370
             ++P   N
Sbjct:   363 KLPPRNN 369

GO:0003824 "catalytic activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0003860 "3-hydroxyisobutyryl-CoA hydrolase activity" evidence=IGI;IDA

GO:0006574 "valine catabolic process" evidence=NAS;IMP

GO:0006635 "fatty acid beta-oxidation" evidence=TAS

GO:0009733 "response to auxin stimulus" evidence=IMP

GO:0009409 "response to cold" evidence=IMP

TAIR|locus:2054437 AT2G30660 [Arabidopsis thaliana (taxid:3702)]

 Score = 698 (250.8 bits), Expect = 8.0e-69, P = 8.0e-69
 Identities = 142/328 (43%), Positives = 206/328 (62%)

Query:    14 VLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGG 73
             VL EE  +VR++TLNRP+QLN +   ++S L +    +E+D   KLVI+KG GRAF AGG
Sbjct:     7 VLVEEKSSVRILTLNRPKQLNALCFNMISRLLQLFRAYEEDPSVKLVILKGQGRAFCAGG 66

Query:    74 DLKMFYDGR-NSKDSCLEVVYR-MYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFS 131
             D+          K       +R  Y L + + TY K QV++ +GI MG GA + +  +F 
Sbjct:    67 DVPPVVQNMVQGKWRLGADFFRDQYTLNYVMATYSKPQVSILNGIVMGAGAGVSIHGRFR 126

Query:   132 VVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHLGEFLALTGARLNGKELVAAGLATHFV 191
             + TE TVF+ PE S+G   D G S+  SRLPG  GE++ LTGARL+G EL+A GLATHFV
Sbjct:   127 IATENTVFAMPETSLGLFPDVGASYFLSRLPGFFGEYVGLTGARLDGAELLACGLATHFV 186

Query:   192 PSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKETVAEI 251
             PS +L  LE  L  + + D   V + ++ +++   L  +S  ++  +ID CFSK T+ EI
Sbjct:   187 PSTRLTALETDLCKVGSSDPSFVSTILDAYTQHPHLKQKSAYHRLDVIDRCFSKRTMEEI 246

Query:   252 IKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINI 311
             I + E E  +E + W    ++ LKKSSP+ LKI+LRS+REGR Q +  CL +E+R+  ++
Sbjct:   247 ISALERETTQELDDWSLTTIRALKKSSPSSLKISLRSIREGRLQGVGHCLTREYRMVCHV 306

Query:   312 LRAIISADIYEGIRALTIEKDNAPKWDP 339
             ++  +S D+ EG RA+ I+KD  PKW+P
Sbjct:   307 MKGDLSKDLVEGCRAILIDKDRNPKWEP 334

GO:0003824 "catalytic activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

TAIR|locus:2054517 AT2G30650 [Arabidopsis thaliana (taxid:3702)]

 Score = 692 (248.7 bits), Expect = 3.5e-68, P = 3.5e-68
 Identities = 141/328 (42%), Positives = 210/328 (64%)

Query:    14 VLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGG 73
             VL EE  +VR++T NRP+QLN +S  +VS L +    +E+D   KLV++KG GRAFSAGG
Sbjct:     7 VLVEEKSSVRILTFNRPKQLNALSFHMVSRLLQLFLAYEEDPSVKLVVLKGQGRAFSAGG 66

Query:    74 DLK-MFYDGRNSKDSCLEVVYRM-YWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFS 131
             D+  +  D    K       +++ Y L + + TY+K QV++ +GI MGGGA L    +F 
Sbjct:    67 DIPPIVRDILQGKLIRGAHYFKVGYTLNYVLSTYRKPQVSILNGIVMGGGAGLSTNGRFR 126

Query:   132 VVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHLGEFLALTGARLNGKELVAAGLATHFV 191
             + TE TVF+ PE ++G   D G S+  SRLPG  GE++ LTGARL+G E++A GLATHFV
Sbjct:   127 IATENTVFAMPETALGLFPDVGASYFLSRLPGFFGEYVGLTGARLDGAEMLACGLATHFV 186

Query:   192 PSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKETVAEI 251
             PS  L  LE  L  + + ++  + + ++ ++E   L+  S  ++  +ID CFSK TV EI
Sbjct:   187 PSISLTALEAELYKVGSSNQTFISTILDAYAEYPHLNQHSSYHRLDVIDRCFSKRTVEEI 246

Query:   252 IKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINI 311
               + E E  ++ N W+   ++ L+K+SP+ LKI+LRS+REGR Q + +CL +E+R+  ++
Sbjct:   247 FSALEREVTQKPNDWLLATIQALEKASPSCLKISLRSIREGRLQGVGQCLIREYRMVCHV 306

Query:   312 LRAIISADIYEGIRALTIEKDNAPKWDP 339
             ++  IS D  EG RA+ I+KD  PKW P
Sbjct:   307 MKGDISKDFVEGCRAVLIDKDRNPKWQP 334

GO:0003824 "catalytic activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2116797 AT4G31810 [Arabidopsis thaliana (taxid:3702)]

 Score = 683 (245.5 bits), Expect = 3.1e-67, P = 3.1e-67
 Identities = 149/365 (40%), Positives = 214/365 (58%)

Query:    11 EQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFS 70
             E  VL E     R   LN P  LN +S+ +V  L    E WE++     V++KG G+ F 
Sbjct:    40 EDQVLVEGKAKSRAAILNNPSSLNALSAPMVGRLKRLYESWEENPAISFVLMKGSGKTFC 99

Query:    71 AGGDLKMFYDG---RNSKDSCL--EVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLM 125
             +G D+   Y      N+++S L  E +Y+  +L     TY K  +A+  G+TMG G  + 
Sbjct:   100 SGADVLSLYHSINEGNTEESKLFFENLYKFVYLQG---TYLKPNIAIMDGVTMGCGGGIS 156

Query:   126 VPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHLGEFLALTGARLNGKELVAAG 185
             +P  F V T+KTV + PE  IGFH D G S+  SRLPG+LGE+LALTG +LNG E++A G
Sbjct:   157 LPGMFRVATDKTVLAHPEVQIGFHPDAGASYYLSRLPGYLGEYLALTGQKLNGVEMIACG 216

Query:   186 LATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSK 245
             LATH+  + +LP +E+R+  L T D   ++ ++ ++ + V  D  SVL+K  +ID+ F  
Sbjct:   217 LATHYCLNARLPLIEERIGKLLTDDPAVIEDSLAQYGDLVYPDSSSVLHKIELIDKYFGL 276

Query:   246 ETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEF 305
             +TV EII++ E EA    N W    LK +K++SP  LKITL+S+REGR Q+L +CL  E+
Sbjct:   277 DTVEEIIEAMENEAANSCNEWCKKTLKQIKEASPLSLKITLQSIREGRFQTLDQCLTHEY 336

Query:   306 RLTINILRAIISADIYEGIRALTIEKDNAPKWDPPTXXXXXXXXXXXXFQPFGE----DL 361
             R++I  +  ++S D  EGIRA  ++KD APKWDPP             F P  E    D 
Sbjct:   337 RISICGVSKVVSGDFCEGIRARLVDKDFAPKWDPPRLEDVSKDMVDCYFTPASELDDSDS 396

Query:   362 ELQIP 366
             EL++P
Sbjct:   397 ELKLP 401

GO:0003824 "catalytic activity" evidence=IEA

GO:0003860 "3-hydroxyisobutyryl-CoA hydrolase activity" evidence=ISS

GO:0006635 "fatty acid beta-oxidation" evidence=ISS

GO:0008152 "metabolic process" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0009220 "pyrimidine ribonucleotide biosynthetic process" evidence=RCA

GO:0009640 "photomorphogenesis" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0010388 "cullin deneddylation" evidence=RCA

GO:0034968 "histone lysine methylation" evidence=RCA

ZFIN|ZDB-GENE-050327-29 hibch "3-hydroxyisobutyryl-Coenzyme A hydrolase" [Danio rerio (taxid:7955)]

 Score = 618 (222.6 bits), Expect = 2.4e-60, P = 2.4e-60
 Identities = 142/357 (39%), Positives = 207/357 (57%)

Query:    14 VLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVG-RAFSAG 72
             VL E++G   ++TLNRP+ LN ++  ++  +   L+KW+K+ +  +VI+KG G +AF AG
Sbjct:    36 VLFEKVGKAGVITLNRPKALNALTLNMIRHIYPQLKKWDKNSETDVVIIKGAGEKAFCAG 95

Query:    73 GDLKMFYDGRNSKDSCLEVVYRM-YWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFS 131
             GD++   +   + DS  +V +R  Y L + I TY+K  VAL +GITMGGG  L V  +F 
Sbjct:    96 GDIRAIAEAGKAGDSLSQVFFREEYILNNTIGTYQKPYVALINGITMGGGVGLSVHGQFR 155

Query:   132 VVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHLGEFLALTGARLNGKELVAAGLATHFV 191
             V TEKT+F+ PE  IG   D G  +   RL G LG FLALTG RL G+++   G+ATHFV
Sbjct:   156 VATEKTLFAMPETGIGLFPDVGGGYFLPRLQGKLGLFLALTGFRLKGRDVQRVGVATHFV 215

Query:   192 PSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQS--VLNKQS-IIDECFSKETV 248
              SEK+  LEK L+ L +     V   ++ + E   LD +   VL +Q+  ID  FS  +V
Sbjct:   216 QSEKIESLEKDLVDLKSPSISDVAQLLDSYQEQSHLDAEKPFVLQEQTEAIDRLFSAGSV 275

Query:   249 AEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLT 308
              EI+++ +    K+G+ +     + L K SPT LK+T R + EG   S+ E    E+RL+
Sbjct:   276 EEIVENLK----KDGSAFALKQAETLVKMSPTSLKLTFRQIEEGARMSMQEVFMMEYRLS 331

Query:   309 INILRAIISA-DIYEGIRALTIEKDNAPKWDPPTXXXXXXXXXXXXFQPFGE-DLEL 363
                 +A ++  D YEG+RA+ I+KD +PKW P T            F   GE DL+L
Sbjct:   332 ----QACMNGHDFYEGVRAVLIDKDQSPKWKPSTLAGVSVQFVDKCFSSLGERDLKL 384

GO:0003860 "3-hydroxyisobutyryl-CoA hydrolase activity" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0009083 "branched-chain amino acid catabolic process" evidence=IEA

UNIPROTKB|Q6NVY1 HIBCH "3-hydroxyisobutyryl-CoA hydrolase, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 607 (218.7 bits), Expect = 3.5e-59, P = 3.5e-59
 Identities = 139/358 (38%), Positives = 212/358 (59%)

Query:    11 EQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVG-RAF 69
             E+V+L E+ G   ++TLNRP+ LN ++  ++  +   L+KWE+D +  L+I+KG G +AF
Sbjct:    36 EEVLL-EKKGCTGVITLNRPKFLNALTLNMIRQIYPQLKKWEQDPETFLIIIKGAGGKAF 94

Query:    70 SAGGDLKMFYDGRNSKDSCLEVVYRM-YWLCHHIHTYKKTQVALAHGITMGGGASLMVPL 128
              AGGD+++  +   +K     V +R  Y L + + + +K  VAL HGITMGGG  L V  
Sbjct:    95 CAGGDIRVISEAEKAKQKIAPVFFREEYMLNNAVGSCQKPYVALIHGITMGGGVGLSVHG 154

Query:   129 KFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHLGEFLALTGARLNGKELVAAGLAT 188
             +F V TEK +F+ PE +IG   D G  +   RL G LG FLALTG RL G+++  AG+AT
Sbjct:   155 QFRVATEKCLFAMPETAIGLFPDVGGGYFLPRLQGKLGYFLALTGFRLKGRDVYRAGIAT 214

Query:   189 HFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLD-GQSVLNKQSI--IDECFSK 245
             HFV SEKL  LE+ L+ L +  +  + S +E +  + ++D  +S + ++ +  I+ CFS 
Sbjct:   215 HFVDSEKLAMLEEDLLALKSPSKENIASVLENYHTESKIDRDKSFILEEHMDKINSCFSA 274

Query:   246 ETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEF 305
              TV EII++ +    ++G+ +    LK + K SPT LKITLR + EG  ++L E L  E+
Sbjct:   275 NTVEEIIENLQ----QDGSSFALEQLKVINKMSPTSLKITLRQLMEGSSKTLQEVLTMEY 330

Query:   306 RLTINILRAIISADIYEGIRALTIEKDNAPKWDPPTXXXXXXXXXXXXFQPFGE-DLE 362
             RL+   +R     D +EG+RA+ I+KD +PKW P              F+  G  DL+
Sbjct:   331 RLSQACMRG---HDFHEGVRAVLIDKDQSPKWKPADLKEVTEEDLNNHFKSLGSSDLK 385

GO:0003860 "3-hydroxyisobutyryl-CoA hydrolase activity" evidence=IEA

GO:0006574 "valine catabolic process" evidence=IEA

GO:0005759 "mitochondrial matrix" evidence=TAS

GO:0009083 "branched-chain amino acid catabolic process" evidence=TAS

GO:0034641 "cellular nitrogen compound metabolic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

UNIPROTKB|F1P188 HIBCH "3-hydroxyisobutyryl-CoA hydrolase, mitochondrial" [Gallus gallus (taxid:9031)]

 Score = 601 (216.6 bits), Expect = 1.5e-58, P = 1.5e-58
 Identities = 140/364 (38%), Positives = 206/364 (56%)

Query:     7 KNPDEQV-VLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGV 65
             K+ D    VL ++ G   ++TLNRP+ LN +S K++  +   ++ WE+D +  L+I+KG 
Sbjct:    29 KHTDSAADVLLQKQGGAGIITLNRPKVLNALSFKMIQQIYPQIKAWEQDPETFLIIIKGT 88

Query:    66 G-RAFSAGGDLKMFYDGRNSKDSCLEVVYRM-YWLCHHIHTYKKTQVALAHGITMGGGAS 123
             G +AF AGGD++   D   + D+     +R  Y L + I T KK  VAL  GITMGGG  
Sbjct:    89 GEKAFCAGGDVRAIADAGKAGDTMTRDYFREEYRLDNAIGTCKKPYVALIDGITMGGGVG 148

Query:   124 LMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHLGEFLALTGARLNGKELVA 183
             L V   F V TEKTVF+ PE +IG   D G  +   RL G +G  LALTG RL G++++ 
Sbjct:   149 LSVHGHFRVATEKTVFAMPETAIGLFPDVGGGYFLPRLSGKIGHLLALTGFRLKGRDVLK 208

Query:   184 AGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQS--VLNKQ-SIID 240
             AG+ATHFV S KLPELEK LI L +  +  +   +  +    ++D +   VL++    I+
Sbjct:   209 AGIATHFVESGKLPELEKDLIALKSPSKENIADLLNSYHMQTKIDQEKEFVLDEHMERIN 268

Query:   241 ECFSKETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAEC 300
               FS  ++ EI+   +    ++G+ +    L+ + K SPT LK+TLR +REG   SL + 
Sbjct:   269 SIFSANSMEEIVHKLK----QDGSPFATKQLEAINKMSPTSLKLTLRQLREGATMSLQDV 324

Query:   301 LKKEFRLTINILRAIISADIYEGIRALTIEKDNAPKWDPPTXXXXXXXXXXXXFQPFGE- 359
                E+RL+   +R     D YEG+RA+ I+KD +P+W P T            F+P G  
Sbjct:   325 FTMEYRLSQACMRG---HDFYEGVRAVLIDKDQSPRWKPATLEEVSDEFVDNCFKPLGNN 381

Query:   360 DLEL 363
             DL+L
Sbjct:   382 DLKL 385

GO:0005739 "mitochondrion" evidence=IEA

UNIPROTKB|Q5ZJ60 HIBCH "3-hydroxyisobutyryl-CoA hydrolase, mitochondrial" [Gallus gallus (taxid:9031)]

 Score = 598 (215.6 bits), Expect = 3.2e-58, P = 3.2e-58
 Identities = 139/364 (38%), Positives = 206/364 (56%)

Query:     7 KNPDEQV-VLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGV 65
             K+ D    VL ++ G   ++TLNRP+ LN +S K++  +   ++ WE+D +  L+I+KG 
Sbjct:    29 KHTDSAADVLLQKQGGAGIITLNRPKVLNALSFKMIQQIYPQIKAWEQDPETFLIIIKGT 88

Query:    66 G-RAFSAGGDLKMFYDGRNSKDSCLEVVYRM-YWLCHHIHTYKKTQVALAHGITMGGGAS 123
             G +AF AGGD++   D   + D+     +R  Y L + I T KK  VAL  GITMGGG  
Sbjct:    89 GEKAFCAGGDVRAIADAGKAGDTMTRDYFREEYRLDNAIGTCKKPYVALIDGITMGGGVG 148

Query:   124 LMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHLGEFLALTGARLNGKELVA 183
             L V   F V TEKTVF+ PE +IG   D G  +   RL G +G  LALTG RL G++++ 
Sbjct:   149 LSVHGHFRVATEKTVFAMPETAIGLFPDVGGGYFLPRLSGKIGHLLALTGFRLKGRDVLK 208

Query:   184 AGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQS--VLNKQ-SIID 240
             AG+ATHFV S KLPELEK LI L +  +  +   +  +    ++D +   VL++    I+
Sbjct:   209 AGIATHFVESGKLPELEKDLIALKSPSKENIADLLNSYHMQTKIDQEKEFVLDEHMERIN 268

Query:   241 ECFSKETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAEC 300
               FS  ++ EI++  +    ++G+ +    L+ + K SPT LK+TLR +REG   SL + 
Sbjct:   269 SIFSANSMEEIVQKLK----QDGSPFATKQLEAINKMSPTSLKLTLRQLREGATMSLQDV 324

Query:   301 LKKEFRLTINILRAIISADIYEGIRALTIEKDNAPKWDPPTXXXXXXXXXXXXFQPFGE- 359
                E+RL+   +R     D YEG+RA+ I+KD +P+W P              F+P G  
Sbjct:   325 FTMEYRLSQACMRG---HDFYEGVRAVLIDKDQSPRWKPAALEEVSDEFVDNCFKPLGNN 381

Query:   360 DLEL 363
             DL+L
Sbjct:   382 DLKL 385

GO:0003860 "3-hydroxyisobutyryl-CoA hydrolase activity" evidence=IEA

GO:0006574 "valine catabolic process" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

UNIPROTKB|Q2HJ73 HIBCH "3-hydroxyisobutyryl-CoA hydrolase, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 575 (207.5 bits), Expect = 8.6e-56, P = 8.6e-56
 Identities = 135/355 (38%), Positives = 203/355 (57%)

Query:    14 VLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVG-RAFSAG 72
             VL E  G   ++TLNRPR LN ++  ++  +   L+KWE+D +  L+I+KG G +AF AG
Sbjct:    38 VLLERKGCAGVITLNRPRFLNTLTLGMIRQIYAQLKKWEQDPKTFLIIIKGAGEKAFCAG 97

Query:    73 GDLKMFYDGRNSKDSCLEVVYRM-YWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFS 131
             GD++   + RN+    L+ ++R  Y L + I + +K  +AL HGITMGGG  + V  +F 
Sbjct:    98 GDIRALSEARNTNQKMLQDLFREEYILNNAIDSCQKPYIALIHGITMGGGVGVSVHGQFR 157

Query:   132 VVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHLGEFLALTGARLNGKELVAAGLATHFV 191
             V TEK+VF+ PE +IG   D G  +   RL G LG FLALTG RL G+++  AG+ATHFV
Sbjct:   158 VATEKSVFAMPETAIGLFPDVGGGYFLPRLQGKLGYFLALTGFRLKGRDVYTAGIATHFV 217

Query:   192 PSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQS--VLNKQ-SIIDECFSKETV 248
               EKL  LE+ L+ L +  +  +   +E +    + D     +L +    I+  FS  TV
Sbjct:   218 DFEKLGMLEEDLLALKSPSKENIADVLETYHAKSKTDQDKPFILEEHMDKINSWFSANTV 277

Query:   249 AEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLT 308
              +I+ + +    ++G+ +    LK +KK SPT LKITLR + EG  ++L E L  E+RL+
Sbjct:   278 EQIVDNLQ----QDGSSFALEQLKVIKKMSPTSLKITLRQLMEGSSKTLPEVLIMEYRLS 333

Query:   309 INILRAIISADIYEGIRALTIEKDNAPKWDPPTXXXXXXXXXXXXFQPFGE-DLE 362
                ++     D +EG+RA+ I+KD +PKW P              F+  G  DL+
Sbjct:   334 QACMKG---HDFHEGVRAVLIDKDQSPKWKPADLKEVTDEDLNDYFKSLGSNDLK 385

GO:0006574 "valine catabolic process" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0003860 "3-hydroxyisobutyryl-CoA hydrolase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q2HJ73	HIBCH_BOVIN	3, ., 1, ., 2, ., 4	0.3835	0.8673	0.8808	yes	no
Q28FR6	HIBCH_XENTR	3, ., 1, ., 2, ., 4	0.3942	0.8596	0.8753	yes	no
Q9SHJ8	HIBC8_ARATH	3, ., 1, ., 2, ., -	0.7414	0.9642	0.9767	yes	no
Q5ZJ60	HIBCH_CHICK	3, ., 1, ., 2, ., 4	0.3988	0.875	0.8909	yes	no
Q6NVY1	HIBCH_HUMAN	3, ., 1, ., 2, ., 4	0.3942	0.8622	0.8756	yes	no
Q8QZS1	HIBCH_MOUSE	3, ., 1, ., 2, ., 4	0.3828	0.8622	0.8779	yes	no
Q58EB4	HIBCH_DANRE	3, ., 1, ., 2, ., 4	0.4044	0.875	0.8979	yes	no
Q5XIE6	HIBCH_RAT	3, ., 1, ., 2, ., 4	0.3781	0.8801	0.8961	yes	no
Q55GS6	HIBCH_DICDI	3, ., 1, ., 2, ., 4	0.3526	0.8826	0.9081	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.1.2	0.766
3rd Layer	3.1.2.4	0.824

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	eugene3.00020542	SubName- Full=Putative uncharacterized protein; (391 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	grail3.0006050201	enoyl-CoA hydratase (EC-4.2.1.17) (265 aa)			•			•		•	0.911
	estExt_fgenesh4_pg.C_LG_VIII0916	enoyl-CoA hydratase (EC-4.2.1.17) (265 aa)			•			•		•	0.911
	estExt_fgenesh4_pg.C_LG_VI1023	SubName- Full=Putative uncharacterized protein; (380 aa)			•			•		•	0.907
	eugene3.00013051	hypothetical protein (348 aa)		•				•			0.899

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	392
PLN02874	379	PLN02874, PLN02874, 3-hydroxyisobutyryl-CoA hydrol	0.0
PLN02851	407	PLN02851, PLN02851, 3-hydroxyisobutyryl-CoA hydrol	1e-107
PRK05617	342	PRK05617, PRK05617, 3-hydroxyisobutyryl-CoA hydrol	1e-107
PLN02988	381	PLN02988, PLN02988, 3-hydroxyisobutyryl-CoA hydrol	1e-98
PLN02157	401	PLN02157, PLN02157, 3-hydroxyisobutyryl-CoA hydrol	1e-97
cd06558	195	cd06558, crotonase-like, Crotonase/Enoyl-Coenzyme	7e-48
pfam13766	117	pfam13766, ECH_C, 2-enoyl-CoA Hydratase C-terminal	1e-39
COG1024	257	COG1024, CaiD, Enoyl-CoA hydratase/carnithine race	2e-38
PRK05980	260	PRK05980, PRK05980, enoyl-CoA hydratase; Provision	1e-20
PRK06688	259	PRK06688, PRK06688, enoyl-CoA hydratase; Provision	2e-20
pfam00378	245	pfam00378, ECH, Enoyl-CoA hydratase/isomerase fami	3e-20
PRK07658	257	PRK07658, PRK07658, enoyl-CoA hydratase; Provision	1e-17
PRK05809	260	PRK05809, PRK05809, 3-hydroxybutyryl-CoA dehydrata	9e-15
PRK06072	248	PRK06072, PRK06072, enoyl-CoA hydratase; Provision	3e-14
PRK05862	257	PRK05862, PRK05862, enoyl-CoA hydratase; Provision	3e-14
PRK08290	288	PRK08290, PRK08290, enoyl-CoA hydratase; Provision	4e-14
PRK05995	262	PRK05995, PRK05995, enoyl-CoA hydratase; Provision	2e-13
PRK06190	258	PRK06190, PRK06190, enoyl-CoA hydratase; Provision	5e-13
PRK12478	298	PRK12478, PRK12478, enoyl-CoA hydratase; Provision	7e-13
PRK09674	255	PRK09674, PRK09674, enoyl-CoA hydratase-isomerase;	1e-12
PRK08138	261	PRK08138, PRK08138, enoyl-CoA hydratase; Provision	2e-12
PRK06494	259	PRK06494, PRK06494, enoyl-CoA hydratase; Provision	2e-12
TIGR02280	256	TIGR02280, PaaB1, phenylacetate degradation probab	3e-12
PRK08150	255	PRK08150, PRK08150, enoyl-CoA hydratase; Provision	6e-12
PRK07657	260	PRK07657, PRK07657, enoyl-CoA hydratase; Provision	1e-11
PRK06127	269	PRK06127, PRK06127, enoyl-CoA hydratase; Provision	2e-11
PRK08139	266	PRK08139, PRK08139, enoyl-CoA hydratase; Validated	5e-11
PRK07659	260	PRK07659, PRK07659, enoyl-CoA hydratase; Provision	6e-11
PRK07854	243	PRK07854, PRK07854, enoyl-CoA hydratase; Provision	7e-11
PRK07511	260	PRK07511, PRK07511, enoyl-CoA hydratase; Provision	9e-11
PRK08252	254	PRK08252, PRK08252, enoyl-CoA hydratase; Provision	2e-10
PRK09120	275	PRK09120, PRK09120, p-hydroxycinnamoyl CoA hydrata	2e-10
PRK05870	249	PRK05870, PRK05870, enoyl-CoA hydratase; Provision	2e-10
PRK07260	255	PRK07260, PRK07260, enoyl-CoA hydratase; Provision	4e-10
PLN02664	275	PLN02664, PLN02664, enoyl-CoA hydratase/delta3,5-d	5e-10
PRK06210	272	PRK06210, PRK06210, enoyl-CoA hydratase; Provision	5e-10
PLN02600	251	PLN02600, PLN02600, enoyl-CoA hydratase	9e-10
PRK03580	261	PRK03580, PRK03580, carnitinyl-CoA dehydratase; Pr	1e-09
PRK06495	257	PRK06495, PRK06495, enoyl-CoA hydratase; Provision	2e-09
PRK06023	251	PRK06023, PRK06023, enoyl-CoA hydratase; Provision	6e-09
PRK08272	302	PRK08272, PRK08272, enoyl-CoA hydratase; Provision	7e-09
PRK06144	262	PRK06144, PRK06144, enoyl-CoA hydratase; Provision	8e-09
PRK07799	263	PRK07799, PRK07799, enoyl-CoA hydratase; Provision	9e-09
PRK06142	272	PRK06142, PRK06142, enoyl-CoA hydratase; Provision	3e-08
TIGR03210	256	TIGR03210, badI, 2-ketocyclohexanecarboxyl-CoA hyd	5e-08
PRK08260	296	PRK08260, PRK08260, enoyl-CoA hydratase; Provision	6e-08
PRK09245	266	PRK09245, PRK09245, enoyl-CoA hydratase; Provision	2e-07
PRK05864	276	PRK05864, PRK05864, enoyl-CoA hydratase; Provision	3e-07
PRK06143	256	PRK06143, PRK06143, enoyl-CoA hydratase; Provision	3e-07
PLN02888	265	PLN02888, PLN02888, enoyl-CoA hydratase	3e-07
PRK07327	268	PRK07327, PRK07327, enoyl-CoA hydratase; Provision	3e-07
TIGR01929	259	TIGR01929, menB, naphthoate synthase (dihydroxynap	4e-07
PRK08140	262	PRK08140, PRK08140, enoyl-CoA hydratase; Provision	6e-07
PRK05981	266	PRK05981, PRK05981, enoyl-CoA hydratase; Provision	1e-06
PRK07509	262	PRK07509, PRK07509, enoyl-CoA hydratase; Provision	1e-06
PRK11423	261	PRK11423, PRK11423, methylmalonyl-CoA decarboxylas	2e-06
PRK05674	265	PRK05674, PRK05674, gamma-carboxygeranoyl-CoA hydr	7e-06
TIGR02440	699	TIGR02440, FadJ, fatty oxidation complex, alpha su	2e-05
PRK07827	260	PRK07827, PRK07827, enoyl-CoA hydratase; Provision	3e-05
PRK07938	249	PRK07938, PRK07938, enoyl-CoA hydratase; Provision	5e-05
PRK07112	255	PRK07112, PRK07112, polyketide biosynthesis enoyl-	7e-05
PRK08259	254	PRK08259, PRK08259, enoyl-CoA hydratase; Provision	7e-05
PRK07468	262	PRK07468, PRK07468, enoyl-CoA hydratase; Provision	2e-04
PRK07110	249	PRK07110, PRK07110, polyketide biosynthesis enoyl-	8e-04
PRK09076	258	PRK09076, PRK09076, enoyl-CoA hydratase; Provision	9e-04
PRK06563	255	PRK06563, PRK06563, enoyl-CoA hydratase; Provision	0.002
COG0447	282	COG0447, MenB, Dihydroxynaphthoic acid synthase [C	0.004

>gnl|CDD|178462 PLN02874, PLN02874, 3-hydroxyisobutyryl-CoA hydrolase-like protein

 Score =  716 bits (1850), Expect = 0.0
 Identities = 292/379 (77%), Positives = 332/379 (87%)

Query: 2   AQGVVKNPDEQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVI 61
               V+NP E+VVLGEE G VR++TLNRPRQLNVIS  VVSLLAE+LE+WEKDD  +L+I
Sbjct: 1   MAQQVQNPAEEVVLGEEKGRVRVITLNRPRQLNVISLSVVSLLAEFLEQWEKDDSVELII 60

Query: 62  VKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGG 121
           +KG GRAFSAGGDLKMFYDGR S DSCLEVVYRMYWLC+HIHTYKKTQVAL HG+ MGGG
Sbjct: 61  IKGAGRAFSAGGDLKMFYDGRESDDSCLEVVYRMYWLCYHIHTYKKTQVALVHGLVMGGG 120

Query: 122 ASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHLGEFLALTGARLNGKEL 181
           A LMVP+KF VVTEKTVF+TPEAS+GFHTDCGFS+I SRLPGHLGE+LALTGARLNGKE+
Sbjct: 121 AGLMVPMKFRVVTEKTVFATPEASVGFHTDCGFSYILSRLPGHLGEYLALTGARLNGKEM 180

Query: 182 VAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDE 241
           VA GLATHFVPSEKLPELEKRL+ LN+GDE AV+ AIEEFS+DVQ D  S+LNKQS I+E
Sbjct: 181 VACGLATHFVPSEKLPELEKRLLNLNSGDESAVQEAIEEFSKDVQADEDSILNKQSWINE 240

Query: 242 CFSKETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECL 301
           CFSK+TV EIIK+FE+EA K GN WI   LKGL++SSPTGLKITLRS+REGR+QSLAECL
Sbjct: 241 CFSKDTVEEIIKAFESEASKTGNEWIKETLKGLRRSSPTGLKITLRSIREGRKQSLAECL 300

Query: 302 KKEFRLTINILRAIISADIYEGIRALTIEKDNAPKWDPPTLDKVDDDKVDLVFQPFGEDL 361
           KKEFRLT+NILR+ +S D+YEGIRAL I+KDNAPKW+P TLD+V D+KVDLVFQPF    
Sbjct: 301 KKEFRLTMNILRSTVSDDVYEGIRALVIDKDNAPKWNPSTLDEVTDEKVDLVFQPFKARE 360

Query: 362 ELQIPENENCRWDGKYENS 380
           ELQ+PE E  RW GKYE+S
Sbjct: 361 ELQLPEEEENRWSGKYEHS 379

Length = 379

>gnl|CDD|178443 PLN02851, PLN02851, 3-hydroxyisobutyryl-CoA hydrolase-like protein

 Score =  320 bits (821), Expect = e-107
 Identities = 153/359 (42%), Positives = 220/359 (61%), Gaps = 3/359 (0%)

Query: 11  EQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFS 70
           +  VL E     R   LNRP  LN ++  +V+ L    E WE++     V++KG GRAF 
Sbjct: 41  QDQVLVEGRAKSRAAILNRPSSLNALTIPMVARLKRLYESWEENPDIGFVLMKGSGRAFC 100

Query: 71  AGGDLKMFYDGRNSK--DSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPL 128
           +G D+   Y   N    + C      +Y   +   TY K  VA+  GITMG GA + +P 
Sbjct: 101 SGADVVSLYHLINEGNVEECKLFFENLYKFVYLQGTYLKPNVAIMDGITMGCGAGISIPG 160

Query: 129 KFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHLGEFLALTGARLNGKELVAAGLAT 188
            F VVT+KTVF+ PE  +GFH D G S+  SRLPG+LGE+LALTG +LNG E++A GLAT
Sbjct: 161 MFRVVTDKTVFAHPEVQMGFHPDAGASYYLSRLPGYLGEYLALTGQKLNGVEMIACGLAT 220

Query: 189 HFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKETV 248
           H+  + +LP +E+RL  L T D   ++ ++ ++ + V  D  SVL+K   ID+CF  +TV
Sbjct: 221 HYCLNARLPLIEERLGKLLTDDPAVIEDSLAQYGDLVYPDKSSVLHKIETIDKCFGHDTV 280

Query: 249 AEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLT 308
            EII++ E EA    + W    LK +K++SP  LK+TL+S+REGR Q+L +CL +E+R++
Sbjct: 281 EEIIEALENEAASSYDEWCKKALKKIKEASPLSLKVTLQSIREGRFQTLDQCLAREYRIS 340

Query: 309 INILRAIISADIYEGIRALTIEKDNAPKWDPPTLDKVDDDKVDLVFQPFGE-DLELQIP 366
           +  +   +S D  EG+RA  ++KD APKWDPP+L +V  D VD  F P  E + EL++P
Sbjct: 341 LCGVSKWVSGDFCEGVRARLVDKDFAPKWDPPSLGEVSKDMVDCYFTPLDESESELELP 399

Length = 407

>gnl|CDD|235533 PRK05617, PRK05617, 3-hydroxyisobutyryl-CoA hydrolase; Provisional

 Score =  317 bits (816), Expect = e-107
 Identities = 136/357 (38%), Positives = 191/357 (53%), Gaps = 25/357 (7%)

Query: 10  DEQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVG-RA 68
            E  VL E  G V ++TLNRP+ LN +S +++  +   L+ WE DD    V+++G G R 
Sbjct: 1   TEDEVLAEVEGGVGVITLNRPKALNALSLEMIRAIDAALDAWEDDDAVAAVVIEGAGERG 60

Query: 69  FSAGGDLKMFYDGRNSKDSCLEVVY--RMYWLCHHIHTYKKTQVALAHGITMGGG----- 121
           F AGGD++  Y+   + D      +    Y L   I  Y K  +AL  GI MGGG     
Sbjct: 61  FCAGGDIRALYEAARAGDPLAADRFFREEYRLNALIARYPKPYIALMDGIVMGGGVGISA 120

Query: 122 -ASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHLGEFLALTGARLNGKE 180
             S        +VTE+T  + PE  IGF  D G ++  SR PG LG +LALTGAR++  +
Sbjct: 121 HGSH------RIVTERTKMAMPETGIGFFPDVGGTYFLSRAPGALGTYLALTGARISAAD 174

Query: 181 LVAAGLATHFVPSEKLPELEKRLIGLNTGD-EIAVKSAIEEFSEDVQLDGQSVLNKQSII 239
            + AGLA HFVPS  LP L   LI L        V +A+  F+         +  +++ I
Sbjct: 175 ALYAGLADHFVPSADLPALLDALISLRWDSGADVVDAALAAFATPA--PASELAAQRAWI 232

Query: 240 DECFSKETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAE 299
           DECF+ +TV +II + EA+ G     +       L+  SPT LK+TL  +R  R  +L E
Sbjct: 233 DECFAGDTVEDIIAALEADGG----EFAAKTADTLRSRSPTSLKVTLEQLRRARGLTLEE 288

Query: 300 CLKKEFRLTINILRAIISADIYEGIRALTIEKDNAPKWDPPTLDKVDDDKVDLVFQP 356
           CL++E RL + +LR   S D  EG+RA+ I+KD  PKW P TL+ V  + V+  F P
Sbjct: 289 CLRRELRLALAMLR---SPDFVEGVRAVLIDKDRNPKWSPATLEDVTPEDVEAFFAP 342

Length = 342

>gnl|CDD|178568 PLN02988, PLN02988, 3-hydroxyisobutyryl-CoA hydrolase

 Score =  298 bits (764), Expect = 1e-98
 Identities = 154/370 (41%), Positives = 229/370 (61%), Gaps = 5/370 (1%)

Query: 6   VKNPDEQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGV 65
           V+   +  VL EE  +VR++TLNRP+QLN +S  ++S L +    +E+D   KLVI+KG 
Sbjct: 3   VEMASQSQVLVEEKSSVRILTLNRPKQLNALSFHMISRLLQLFLAFEEDPSVKLVILKGH 62

Query: 66  GRAFSAGGDLKMFYDGRNSKDSCLEVVY--RMYWLCHHIHTYKKTQVALAHGITMGGGAS 123
           GRAF AGGD+          +  L   +    Y L + + TY K QV++ +GI MGGGA 
Sbjct: 63  GRAFCAGGDVAAVVRDIEQGNWRLGANFFSDEYMLNYVMATYSKAQVSILNGIVMGGGAG 122

Query: 124 LMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHLGEFLALTGARLNGKELVA 183
           + V  +F + TE TVF+ PE ++G   D G S+  SRLPG  GE++ LTGARL+G E++A
Sbjct: 123 VSVHGRFRIATENTVFAMPETALGLFPDVGASYFLSRLPGFFGEYVGLTGARLDGAEMLA 182

Query: 184 AGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECF 243
            GLATHFVPS +L  LE  L  + + D     + ++ +++  +L  QS  ++  +ID CF
Sbjct: 183 CGLATHFVPSTRLTALEADLCRIGSNDPTFASTILDAYTQHPRLKPQSAYHRLDVIDRCF 242

Query: 244 SKETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKK 303
           S+ TV EII + E EA +E +GWI   ++ LKK+SP  LKI+LRS+REGR Q + +CL +
Sbjct: 243 SRRTVEEIISALEREATQEADGWISATIQALKKASPASLKISLRSIREGRLQGVGQCLIR 302

Query: 304 EFRLTINILRAIISADIYEGIRALTIEKDNAPKWDPPTLDKVDDDKVDLVFQPFGEDLE- 362
           E+R+  ++++  IS D  EG RA+ ++KD  PKW+P  L+ + D  V+  F+   E+ E 
Sbjct: 303 EYRMVCHVMKGEISKDFVEGCRAILVDKDKNPKWEPRRLEDMKDSMVEQYFERVEEEEEW 362

Query: 363 --LQIPENEN 370
             L++P   N
Sbjct: 363 DDLKLPPRNN 372

Length = 381

>gnl|CDD|177817 PLN02157, PLN02157, 3-hydroxyisobutyryl-CoA hydrolase-like protein

 Score =  296 bits (758), Expect = 1e-97
 Identities = 156/362 (43%), Positives = 226/362 (62%), Gaps = 5/362 (1%)

Query: 14  VLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGG 73
           VL E  G  R   LNRP  LN +++ +   L +  + WE+D     V++KG GRAF AGG
Sbjct: 39  VLVEGSGCSRTAILNRPPALNALTTHMGYRLQKLYKNWEEDPNIGFVMMKGSGRAFCAGG 98

Query: 74  DLKMFYD--GRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFS 131
           D+   Y    R S D+  E    +Y   + + TY K  VA+ +G+TMGGG  + +P  F 
Sbjct: 99  DIVSLYHLRKRGSPDAIREFFSSLYSFIYLLGTYLKPHVAILNGVTMGGGTGVSIPGTFR 158

Query: 132 VVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHLGEFLALTGARLNGKELVAAGLATHFV 191
           V T++T+F+TPE  IGFH D G SF  S LPG LGE+L LTG +L+G E++A GLATH++
Sbjct: 159 VATDRTIFATPETIIGFHPDAGASFNLSHLPGRLGEYLGLTGLKLSGAEMLACGLATHYI 218

Query: 192 PSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKETVAEI 251
            SE++P +E++L  L T D   V+S +E+ +E    +   V+ +  ++++CFS +TV EI
Sbjct: 219 RSEEIPVMEEQLKKLLTDDPSVVESCLEKCAEVAHPEKTGVIRRIDLLEKCFSHDTVEEI 278

Query: 252 IKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINI 311
           I S E EAG+  + W    L+ LK+SSP  LK+ LRS+REGR Q+L +CL +E+R+++  
Sbjct: 279 IDSLEIEAGRRKDTWCITTLRRLKESSPLSLKVALRSIREGRLQTLDQCLIREYRMSLQG 338

Query: 312 LRAIISADIYEGIRALTIEKDNAPKWDPPTLDKVDDDKVDLVF---QPFGEDLELQIPEN 368
           L   +S +  EG+RA  I+KD APKWDPP+L+KV +D VD  F    P   DL+L +   
Sbjct: 339 LIGPMSGNFCEGVRARLIDKDEAPKWDPPSLEKVSEDMVDDYFCALTPTEPDLDLPVKLR 398

Query: 369 EN 370
           E+
Sbjct: 399 ES 400

Length = 401

>gnl|CDD|119339 cd06558, crotonase-like, Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily

 Score =  161 bits (409), Expect = 7e-48
 Identities = 57/192 (29%), Positives = 88/192 (45%), Gaps = 1/192 (0%)

Query: 14  VLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGG 73
           VL E  G V  +TLNRP + N +S +++  LA  L++ E D   ++V++ G G+AF AG 
Sbjct: 1   VLVERDGGVATITLNRPEKRNALSLEMLDELAAALDEAEADPDVRVVVLTGAGKAFCAGA 60

Query: 74  DLKMFYDGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVV 133
           DLK      ++ +     +  +  L   +    K  +A  +G  +GGG  L +     + 
Sbjct: 61  DLKELAALSDAGEEARAFIRELQELLRALLRLPKPVIAAVNGAALGGGLELALACDIRIA 120

Query: 134 TEKTVFSTPEASIGFHTDCGFSFIHSRLPGH-LGEFLALTGARLNGKELVAAGLATHFVP 192
            E   F  PE  +G     G +    RL G      L LTG R++ +E +  GL    VP
Sbjct: 121 AEDAKFGLPEVKLGLVPGGGGTQRLPRLVGPARARELLLTGRRISAEEALELGLVDEVVP 180

Query: 193 SEKLPELEKRLI 204
            E+L      L 
Sbjct: 181 DEELLAAALELA 192

This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole. Length = 195

>gnl|CDD|205939 pfam13766, ECH_C, 2-enoyl-CoA Hydratase C-terminal region

 Score =  137 bits (347), Expect = 1e-39
 Identities = 52/117 (44%), Positives = 70/117 (59%), Gaps = 7/117 (5%)

Query: 239 IDECFSKETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLA 298
           ID CFS +TV EI+ + EA+  +    W    LK L+  SP  LK+TL  +R GR  SLA
Sbjct: 8   IDRCFSGDTVEEILAALEADGSE----WAAKTLKTLRSGSPLSLKVTLEQLRRGRGLSLA 63

Query: 299 ECLKKEFRLTINILRAIISADIYEGIRALTIEKDNAPKWDPPTLDKVDDDKVDLVFQ 355
           ECL+ E+RL +  +      D  EG+RAL I+KD  PKW+P TL++V  + VD  F 
Sbjct: 64  ECLRMEYRLAVRCMA---HGDFAEGVRALLIDKDRNPKWNPATLEEVTAEDVDAFFA 117

This is the C-terminal region of enoyl-CoA hydratase. Length = 117

>gnl|CDD|223955 COG1024, CaiD, Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]

 Score =  138 bits (349), Expect = 2e-38
 Identities = 64/253 (25%), Positives = 108/253 (42%), Gaps = 4/253 (1%)

Query: 10  DEQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAF 69
             + +L E    + ++TLNRP +LN ++ +++  LAE L++ E D   ++V++ G G+AF
Sbjct: 3   TYETILVEREDGIAVITLNRPEKLNALNLEMLDELAEALDEAEADPDVRVVVLTGAGKAF 62

Query: 70  SAGGDLKMFYDGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLK 129
           SAG DLK      +   +   ++     L   +    K  +A  +G  +GGG  L +   
Sbjct: 63  SAGADLKELLSPEDGNAA-ENLMQPGQDLLRALADLPKPVIAAVNGYALGGGLELALACD 121

Query: 130 FSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHLGEF-LALTGARLNGKELVAAGLAT 188
             +  E   F  PE ++G     G +    RL G      L LTG  ++  E +  GL  
Sbjct: 122 IRIAAEDAKFGLPEVNLGLLPGDGGTQRLPRLLGRGRAKELLLTGEPISAAEALELGLVD 181

Query: 189 HFVP-SEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNK-QSIIDECFSKE 246
             VP +E+L E    L        +A+ +        ++ D    L          FS E
Sbjct: 182 EVVPDAEELLERALELARRLAAPPLALAATKRLVRAALEADLAEALEAEALAFARLFSSE 241

Query: 247 TVAEIIKSFEAEA 259
              E +++F    
Sbjct: 242 DFREGVRAFLERK 254

Length = 257

>gnl|CDD|180335 PRK05980, PRK05980, enoyl-CoA hydratase; Provisional

 Score = 90.2 bits (224), Expect = 1e-20
 Identities = 59/198 (29%), Positives = 93/198 (46%), Gaps = 12/198 (6%)

Query: 14  VLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVG-RAFSAG 72
           VL E    + L+TLNRP +LN ++  ++  L   L+  E D+  + VI+ G G RAFSAG
Sbjct: 5   VLIEIRDGIALLTLNRPEKLNALNYALIDRLLARLDAIEVDESVRAVILTGAGDRAFSAG 64

Query: 73  GDLKMFYDG-RNSKDSCL-EVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKF 130
            D+  F        D  L + V R   +   +  + K  +A  +G+  GGG  +   +  
Sbjct: 65  ADIHEFSASVAAGADVALRDFVRRGQAMTARLEAFPKPVIAAVNGLAFGGGCEITEAVHL 124

Query: 131 SVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHLG-----EFLALTGARLNGKELVAAG 185
           ++ +E+ +F+ PE  +G     G +    RLP   G     E L LTG   + +  +  G
Sbjct: 125 AIASERALFAKPEIRLGMPPTFGGT---QRLPRLAGRKRALELL-LTGDAFSAERALEIG 180

Query: 186 LATHFVPSEKLPELEKRL 203
           L    VP E+L    + L
Sbjct: 181 LVNAVVPHEELLPAARAL 198

Length = 260

>gnl|CDD|235852 PRK06688, PRK06688, enoyl-CoA hydratase; Provisional

 Score = 89.2 bits (222), Expect = 2e-20
 Identities = 57/174 (32%), Positives = 82/174 (47%), Gaps = 6/174 (3%)

Query: 25  VTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNS 84
           +T+NRP + N +++ +   LA+ LE    D   ++V++ G GRAFSAGGD+K F      
Sbjct: 18  ITINRPDKKNALTAAMYQALADALEAAATDPAVRVVVLTGAGRAFSAGGDIKDFPKAPPK 77

Query: 85  KDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEA 144
               L  V R       I    K  VA  +G  +G G SL +       +E   FS P A
Sbjct: 78  PPDELAPVNRFL---RAIAALPKPVVAAVNGPAVGVGVSLALACDLVYASESAKFSLPFA 134

Query: 145 SIGFHTDCGFSFIHSRLPGHL--GEFLALTGARLNGKELVAAGLATHFVPSEKL 196
            +G   D G S +  RL G     E + L G  L+ +E +  GL    VP+ +L
Sbjct: 135 KLGLCPDAGGSALLPRLIGRARAAE-MLLLGEPLSAEEALRIGLVNRVVPAAEL 187

Length = 259

>gnl|CDD|201191 pfam00378, ECH, Enoyl-CoA hydratase/isomerase family

 Score = 88.5 bits (220), Expect = 3e-20
 Identities = 48/180 (26%), Positives = 85/180 (47%), Gaps = 3/180 (1%)

Query: 20  GNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFY 79
             V ++ L+RP  +N +S+++++ L + LEK E+D   K +++ G   AFSAG D+K   
Sbjct: 6   AGVAVIKLDRPEAVNALSAELLTELIQALEKLEQDPSVKAIVLTGGPGAFSAGADIKEMA 65

Query: 80  DGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVF 139
               ++ +   +  +  W    +    K  +A  +G  +GGG  L +   + +  +   F
Sbjct: 66  AEPLAQQAQFSLEAQDLWS--RLEDLPKPVIAAVNGYALGGGLELALACDYRIAADNAKF 123

Query: 140 STPEASIGFHTDCGFSFIHSRLPGH-LGEFLALTGARLNGKELVAAGLATHFVPSEKLPE 198
             PE  +G     G +    R+ G      + LTG R+  +E +  GL    VP E+L E
Sbjct: 124 GLPEVKLGIIPGAGGTQRLPRIIGVSAALEMLLTGRRIRAQEALKMGLVDKVVPEEQLVE 183

This family contains a diverse set of enzymes including: Enoyl-CoA hydratase. Napthoate synthase. Carnitate racemase. 3-hydoxybutyryl-CoA dehydratase. Dodecanoyl-CoA delta-isomerase. Length = 245

>gnl|CDD|181070 PRK07658, PRK07658, enoyl-CoA hydratase; Provisional

 Score = 81.6 bits (202), Expect = 1e-17
 Identities = 76/251 (30%), Positives = 115/251 (45%), Gaps = 25/251 (9%)

Query: 20  GNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFY 79
            +V ++TLN P   N +SS+V+  L+E L++ EKDD  ++V++ G GR FSAG D+K F 
Sbjct: 10  DHVAVITLNHP-PANALSSQVLHELSELLDQVEKDDNVRVVVIHGEGRFFSAGADIKEFT 68

Query: 80  DGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVF 139
               ++ +  E+          +  + K  +A  HG  +GGG  L +       TE    
Sbjct: 69  SVTEAEQAT-ELAQLGQVTFERVEKFSKPVIAAIHGAALGGGLELAMSCHIRFATESAKL 127

Query: 140 STPEASIGFHTDCGFSFIHSRLPGHLGEFLA----LTGARLNGKELVAAGLATHFVPSEK 195
             PE ++G     GF+    RLP ++G+  A    LT   + G E +  GL     P E 
Sbjct: 128 GLPELNLGLIP--GFAGTQ-RLPRYVGKAKALEMMLTSEPITGAEALKWGLVNGVFPEET 184

Query: 196 LPELEKRLIGLNTGDEIAVKSAI--EEFSEDVQLDGQSVLNKQSIIDECFSKETVAEII- 252
           L +  K+L       +IA KS        E +Q        K S   E   +E  A+I  
Sbjct: 185 LLDDAKKLAK-----KIAGKSPATTRAVLELLQ------TTKSSSYYEGVKRE--AKIFG 231

Query: 253 KSFEAEAGKEG 263
           + F +E  KEG
Sbjct: 232 EVFTSEDAKEG 242

Length = 257

>gnl|CDD|180270 PRK05809, PRK05809, 3-hydroxybutyryl-CoA dehydratase; Validated

 Score = 73.2 bits (180), Expect = 9e-15
 Identities = 77/255 (30%), Positives = 117/255 (45%), Gaps = 24/255 (9%)

Query: 14  VLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVG-RAFSAG 72
           V+ E+ G++ +VT+NRP+ LN ++S+ +  L   L+  E DD    VI+ G G +AF AG
Sbjct: 6   VILEKEGHIAVVTINRPKALNALNSETLKELDTVLDDIENDDNVYAVILTGAGEKAFVAG 65

Query: 73  GDLKMFYD-----GRNSKDSCL-EVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMV 126
            D+    D     GR  K   L   V+R       +    K  +A  +G  +GGG  L +
Sbjct: 66  ADISEMKDLNEEEGR--KFGLLGNKVFR------KLENLDKPVIAAINGFALGGGCELSM 117

Query: 127 PLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHLG----EFLALTGARLNGKELV 182
                + +EK  F  PE  +G     GF     RL   +G    + L  TG  +N +E +
Sbjct: 118 ACDIRIASEKAKFGQPEVGLGITP--GFGGTQ-RLARIVGPGKAKELIYTGDMINAEEAL 174

Query: 183 AAGLATHFVPSEKLPELEKRLIG-LNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQS-IID 240
             GL    V  EKL E  K L   +     IAVK   +  +  +Q+D  + +  ++    
Sbjct: 175 RIGLVNKVVEPEKLMEEAKALANKIAANAPIAVKLCKDAINRGMQVDIDTAVAIEAEDFG 234

Query: 241 ECFSKETVAEIIKSF 255
           ECFS E   E + +F
Sbjct: 235 ECFSTEDQTEGMTAF 249

Length = 260

>gnl|CDD|168377 PRK06072, PRK06072, enoyl-CoA hydratase; Provisional

 Score = 71.7 bits (176), Expect = 3e-14
 Identities = 40/173 (23%), Positives = 75/173 (43%), Gaps = 5/173 (2%)

Query: 14  VLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGG 73
           +  E      +VT++RP +LN ++ ++ +     L++   D + ++VIV G GRAF  G 
Sbjct: 2   IKVESREGYAIVTMSRPDKLNALNLEMRNEFISKLKQINADPKIRVVIVTGEGRAFCVGA 61

Query: 74  DLKMFYDGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVV 133
           DL  F     + D  +++    Y +   I    K  ++  +G+T G    + +   F   
Sbjct: 62  DLSEF-----APDFAIDLRETFYPIIREIRFSDKIYISAINGVTAGACIGIALSTDFKFA 116

Query: 134 TEKTVFSTPEASIGFHTDCGFSFIHSRLPGHLGEFLALTGARLNGKELVAAGL 186
           +    F T    +G  +D G ++   +L G     + + G     +E    GL
Sbjct: 117 SRDVKFVTAFQRLGLASDTGVAYFLLKLTGQRFYEILVLGGEFTAEEAERWGL 169

Length = 248

>gnl|CDD|180295 PRK05862, PRK05862, enoyl-CoA hydratase; Provisional

 Score = 71.6 bits (176), Expect = 3e-14
 Identities = 58/222 (26%), Positives = 94/222 (42%), Gaps = 32/222 (14%)

Query: 10  DEQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAF 69
             + +L E  G V L+TLNRP+ LN ++  ++  L   L  ++ D+    +++ G  +AF
Sbjct: 2   AYETILVETRGRVGLITLNRPKALNALNDALMDELGAALAAFDADEGIGAIVITGSEKAF 61

Query: 70  SAGGDLKM-----FYDGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASL 124
           +AG D+K      F D            Y   W    +   +K  +A   G  +GGG  L
Sbjct: 62  AAGADIKEMADLSFMDVYKGD-------YITNW--EKVARIRKPVIAAVAGYALGGGCEL 112

Query: 125 MVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHLGEF----LALTGARLNGKE 180
            +     +  +   F  PE  +G     G S    RL   +G+     L LTG  ++  E
Sbjct: 113 AMMCDIIIAADTAKFGQPEIKLGVLPGMGGS---QRLTRAVGKAKAMDLCLTGRMMDAAE 169

Query: 181 LVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFS 222
              AGL +  VP++KL +           + +A  + I  FS
Sbjct: 170 AERAGLVSRVVPADKLLD-----------EALAAATTIASFS 200

Length = 257

>gnl|CDD|236220 PRK08290, PRK08290, enoyl-CoA hydratase; Provisional

 Score = 71.9 bits (177), Expect = 4e-14
 Identities = 68/274 (24%), Positives = 102/274 (37%), Gaps = 63/274 (22%)

Query: 9   PDEQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRA 68
            + + V  E  G +  +TLNRP   N  + +++  L     + E DD  +++++ G G+ 
Sbjct: 1   MEYEYVRYEVAGRIARITLNRPEARNAQNRQMLYELDAAFRRAEADDAVRVIVLAGAGKH 60

Query: 69  FSAGGDLK-----------------MFYDGRNSKDSCLEVVYRMYW-----LCHHIHTYK 106
           FSAG DL                  +++DG       +E  Y   W     +C       
Sbjct: 61  FSAGHDLGSGTPGRDRDPGPDQHPTLWWDGAT--KPGVEQRYAREWEVYLGMCRRWRDLP 118

Query: 107 KTQVALAHGITMGGGASLMV--PLKFSVVTEKTVFSTPEASIGFHTDCGFS-FIHSRLPG 163
           K  +A   G  + GG  LM+       V ++   FS P   +G     G   F H   P 
Sbjct: 119 KPTIAQVQGACIAGG--LMLAWVCDLIVASDDAFFSDPVVRMGI---PGVEYFAH---PW 170

Query: 164 HLG-----EFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIA----- 213
            LG     E L  TG RL   E    G+    VP +   ELE   + L     IA     
Sbjct: 171 ELGPRKAKELL-FTGDRLTADEAHRLGMVNRVVPRD---ELEAETLEL--ARRIAAMPPF 224

Query: 214 ----VKSAIEEFSEDVQLDGQSVLNKQSIIDECF 243
                K A+ + + D Q  G       + +D  F
Sbjct: 225 GLRLTKRAVNQ-TLDAQ--GFR-----AALDAVF 250

Length = 288

>gnl|CDD|235664 PRK05995, PRK05995, enoyl-CoA hydratase; Provisional

 Score = 69.6 bits (171), Expect = 2e-13
 Identities = 68/259 (26%), Positives = 101/259 (38%), Gaps = 32/259 (12%)

Query: 17  EEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDL- 75
           E+ G V  VTLNRP   N  +  V++ L       + DD  + V++ G G+AF AG DL 
Sbjct: 9   EQRGQVATVTLNRPDVRNAFNETVIAELTAAFRALDADDSVRAVVLAGAGKAFCAGADLN 68

Query: 76  ---KMFYDGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSV 132
              KM      S D       R+  +   I+   K  +A  HG    GG  L+     +V
Sbjct: 69  WMKKMA---GYSDDENRADARRLADMLRAIYRCPKPVIARVHGDAYAGGMGLVAACDIAV 125

Query: 133 VTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHLGEFLA----LTGARLNGKELVAAGLAT 188
             +  VF   E  +G       + I   +   +GE  A    LT  R +  E +  GL  
Sbjct: 126 AADHAVFCLSEVRLGLIP----ATISPYVIRAMGERAARRYFLTAERFDAAEALRLGLVH 181

Query: 189 HFVPSE----KLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFS 244
             VP+E    K+ EL   L+  +     A K  + +      + G+        ID    
Sbjct: 182 EVVPAEALDAKVDELLAALVANSPQAVRAGKRLVRD------VAGRP-------IDAALI 228

Query: 245 KETVAEIIKSFEAEAGKEG 263
            +T + I      E  +EG
Sbjct: 229 ADTASRIALIRATEEAREG 247

Length = 262

>gnl|CDD|235733 PRK06190, PRK06190, enoyl-CoA hydratase; Provisional

 Score = 68.1 bits (167), Expect = 5e-13
 Identities = 54/198 (27%), Positives = 85/198 (42%), Gaps = 23/198 (11%)

Query: 9   PDEQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRA 68
             E ++L E    VR +TLNRP   N +S+ +   L   L + + DD   +V++ G   A
Sbjct: 1   MTEPILLVETHDRVRTLTLNRPEARNALSAALRRALFAALAEADADDDVDVVVLTGADPA 60

Query: 69  FSAGGDLK------MFYDGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGA 122
           F AG DLK        Y  +++  +       M          +K  +   +G  + GG 
Sbjct: 61  FCAGLDLKELGGDGSAYGAQDALPNPSPAWPAM----------RKPVIGAINGAAVTGGL 110

Query: 123 SLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHLGEFLA----LTGARLNG 178
            L +     + +E+  F+   A +G     G S    RLP  +G   A    LTG  L+ 
Sbjct: 111 ELALACDILIASERARFADTHARVGILPGWGLS---VRLPQKVGIGRARRMSLTGDFLDA 167

Query: 179 KELVAAGLATHFVPSEKL 196
            + + AGL T  VP ++L
Sbjct: 168 ADALRAGLVTEVVPHDEL 185

Length = 258

>gnl|CDD|183548 PRK12478, PRK12478, enoyl-CoA hydratase; Provisional

 Score = 68.1 bits (166), Expect = 7e-13
 Identities = 77/298 (25%), Positives = 121/298 (40%), Gaps = 47/298 (15%)

Query: 9   PDEQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRA 68
           PD Q +L    G V  +TLNRP QLN I   +   +   +   E+D   K+++++G GRA
Sbjct: 2   PDFQTLLYTTAGPVATITLNRPEQLNTIVPPMPDEIEAAIGLAERDQDIKVIVLRGAGRA 61

Query: 69  FSAGGDL---------KMFYDGR--NSKDSCLEVVYRMYWLCHH---IHTYKKTQVALAH 114
           FS G D           M  DGR    KD  + V  R          I    K  +A  H
Sbjct: 62  FSGGYDFGGGFQHWGEAMMTDGRWDPGKDFAM-VTARETGPTQKFMAIWRASKPVIAQVH 120

Query: 115 GITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHLGEFLALTGA 174
           G  +GG +   +     + ++  V  TP + +      G  +++ RL     ++ +LTG 
Sbjct: 121 GWCVGGASDYALCADIVIASDDAVIGTPYSRMWGAYLTGM-WLY-RLSLAKVKWHSLTGR 178

Query: 175 RLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLN 234
            L G +   A L    VP E+   LE R+       E+A + A    S   QL  Q ++ 
Sbjct: 179 PLTGVQAAEAELINEAVPFER---LEARVA------EVATELARIPLS---QLQAQKLIV 226

Query: 235 KQSIIDECFSKETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREG 292
            Q                 ++E   G      +G +L GL +++P  L+    +  +G
Sbjct: 227 NQ-----------------AYE-NMGLASTQTLGGILDGLMRNTPDALEFIRTAETQG 266

Length = 298

>gnl|CDD|182026 PRK09674, PRK09674, enoyl-CoA hydratase-isomerase; Provisional

 Score = 67.1 bits (164), Expect = 1e-12
 Identities = 48/179 (26%), Positives = 77/179 (43%), Gaps = 15/179 (8%)

Query: 22  VRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDG 81
           V L+TLNRP   N +++ +++ L   LE    D    + ++ G  R F+AG DL    + 
Sbjct: 12  VLLLTLNRPEARNALNNALLTQLVNELEAAATDTSIGVCVITGNARFFAAGADLNEMAE- 70

Query: 82  RNSKD--SCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVF 139
              KD  + L       W    +  + K  +A  +G  +G G  L +     +  E   F
Sbjct: 71  ---KDLAATLNDPRPQLW--QRLQAFNKPLIAAVNGYALGAGCELALLCDIVIAGENARF 125

Query: 140 STPEASIGFHTDCGFSFIHSRLPGHLGEFLA----LTGARLNGKELVAAGLATHFVPSE 194
             PE ++G     G +    RL   +G+ LA    LTG  +  ++   AGL +   P E
Sbjct: 126 GLPEITLGIMPGAGGT---QRLIRSVGKSLASQMVLTGESITAQQAQQAGLVSEVFPPE 181

Length = 255

>gnl|CDD|236162 PRK08138, PRK08138, enoyl-CoA hydratase; Provisional

 Score = 66.6 bits (163), Expect = 2e-12
 Identities = 54/194 (27%), Positives = 84/194 (43%), Gaps = 17/194 (8%)

Query: 8   NPDEQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGR 67
              + V+L      V L+ LNRP   N ++ +V   LAE+  +  +D   + +++ G  +
Sbjct: 4   TATDVVLLERPADGVALLRLNRPEARNALNMEVRQQLAEHFTELSEDPDIRAIVLTGGEK 63

Query: 68  AFSAGGDLKMFYDGRNSKDSCLEVVYR---MYWLCHHIHTYKKTQVALAHGITMGGGASL 124
            F+AG D+K F          +E+  R    YW    I    K  +A  +G  +GGG  L
Sbjct: 64  VFAAGADIKEFATA-----GAIEMYLRHTERYW--EAIAQCPKPVIAAVNGYALGGGCEL 116

Query: 125 MVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHLGEF----LALTGARLNGKE 180
            +     V  E   F  PE  +G     G +    RL   +G+F    +ALTG  +   E
Sbjct: 117 AMHADIIVAGESASFGQPEIKVGLMPGAGGT---QRLVRAVGKFKAMRMALTGCMVPAPE 173

Query: 181 LVAAGLATHFVPSE 194
            +A GL +  V  E
Sbjct: 174 ALAIGLVSEVVEDE 187

Length = 261

>gnl|CDD|180591 PRK06494, PRK06494, enoyl-CoA hydratase; Provisional

 Score = 66.6 bits (163), Expect = 2e-12
 Identities = 59/199 (29%), Positives = 84/199 (42%), Gaps = 17/199 (8%)

Query: 11  EQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVG-RAF 69
                 E  G+V +VTLNRP  +N +       L E  + +  D +  + IV G G +AF
Sbjct: 3   LPFSTVERKGHVTIVTLNRPEVMNALHLDAHFELEEVFDDFAADPEQWVAIVTGAGDKAF 62

Query: 70  SAGGDLKMFYDG--RNSKDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVP 127
           SAG DLK    G  R   +S    +   + L        K  +A  +G+ MGGG  L + 
Sbjct: 63  SAGNDLKEQAAGGKRGWPESGFGGLTSRFDLD-------KPIIAAVNGVAMGGGFELALA 115

Query: 128 LKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHLGEFLA----LTGARLNGKELVA 183
               V  E   F+ PE  +G     G      RLP  +G   A    LTG R+  +E + 
Sbjct: 116 CDLIVAAENATFALPEPRVGLAALAGGLH---RLPRQIGLKRAMGMILTGRRVTAREGLE 172

Query: 184 AGLATHFVPSEKLPELEKR 202
            G     VP+ +L    +R
Sbjct: 173 LGFVNEVVPAGELLAAAER 191

Length = 259

>gnl|CDD|131333 TIGR02280, PaaB1, phenylacetate degradation probable enoyl-CoA hydratase paaB

 Score = 66.0 bits (161), Expect = 3e-12
 Identities = 62/227 (27%), Positives = 92/227 (40%), Gaps = 16/227 (7%)

Query: 14  VLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGG 73
           +L      V  +TLNRP +LN  ++++   L E LE+ E+DD A+ +++ G GR F AG 
Sbjct: 1   ILSALEAGVARLTLNRPDKLNSFTAEMHLELREALERVERDD-ARALMLTGAGRGFCAGQ 59

Query: 74  DLKMFYDGRNSKDSCL---EVVYRMYW-LCHHIHTYKKTQVALAHGITMGGGASLMVPLK 129
           DL    +   +          +   Y  L   +       V   +G+  G GA+L +   
Sbjct: 60  DLS---ERNPTPGGAPDLGRTIETFYNPLVRRLRALPLPVVCAVNGVAAGAGANLALACD 116

Query: 130 FSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHL-GEFLALTGARLNGKELVAAGLAT 188
             +  E   F    A IG   D G ++   RL G      LA+ G +L+ +   + GL  
Sbjct: 117 IVLAAESARFIQAFAKIGLIPDSGGTWSLPRLVGRARAMGLAMLGEKLDARTAASWGLIW 176

Query: 189 HFVPSEKLPE----LEKRLIGLNTGDEIAVKSAI---EEFSEDVQLD 228
             V    L +    L   L    T      K AI      S D QLD
Sbjct: 177 QVVDDAALMDEAQALAVHLAAQPTRGLALTKRAIQAAATNSLDTQLD 223

This family of proteins are found within apparent operons for the degradation of phenylacetic acid. These proteins contain the enoyl-CoA hydratase domain as detected by pfam00378. This activity is consistent with current hypotheses for the degradation pathway which involve the ligation of phenylacetate with coenzyme A (paaF), hydroxylation (paaGHIJK), ring-opening (paaN) and degradation of the resulting fatty acid-like compound to a Krebs cycle intermediate (paaABCDE). Length = 256

>gnl|CDD|181254 PRK08150, PRK08150, enoyl-CoA hydratase; Provisional

 Score = 65.0 bits (159), Expect = 6e-12
 Identities = 55/204 (26%), Positives = 87/204 (42%), Gaps = 23/204 (11%)

Query: 11  EQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFS 70
             +V  E  G V  + LNRP + N ++  +++ L     +    +  + V++ G G  F 
Sbjct: 1   PSLVSYELDGGVATIGLNRPAKRNALNDGLIAALRAAFARLP--EGVRAVVLHGEGDHFC 58

Query: 71  AGGDLKMFYDGRNSKDSCLEVVYRMYWLCHHIHTYKKTQ------VALAHGITMGGGASL 124
           AG DL    +    +D+   + +   W  H +  + K Q      +A  HG  +GGG  L
Sbjct: 59  AGLDLSELRE----RDAGEGMHHSRRW--HRV--FDKIQYGRVPVIAALHGAVVGGGLEL 110

Query: 125 MVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG--HLGEFLALTGARLNGKELV 182
                  V  E T F+ PE   G     G S    RL G   + + + LTG   + +E  
Sbjct: 111 ASAAHIRVADESTYFALPEGQRGIFVGGGGSVRVPRLIGVARMTD-MMLTGRVYDAQEGE 169

Query: 183 AAGLATHFVPS----EKLPELEKR 202
             GLA + VP+    +K  EL +R
Sbjct: 170 RLGLAQYLVPAGEALDKAMELARR 193

Length = 255

>gnl|CDD|181069 PRK07657, PRK07657, enoyl-CoA hydratase; Provisional

 Score = 64.4 bits (157), Expect = 1e-11
 Identities = 57/213 (26%), Positives = 94/213 (44%), Gaps = 11/213 (5%)

Query: 22  VRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVG-RAFSAGGDLKMFYD 80
           V  +TLNRPR  N +S  ++  L   L +  ++   ++VI+ G G +AF AG DLK    
Sbjct: 14  VVKITLNRPRAANALSLALLEELQNILTQINEEANVRVVILTGAGEKAFCAGADLKE--R 71

Query: 81  GRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFS 140
              +++     V  +      +    +  +A  +GI +GGG  L +   F +  E     
Sbjct: 72  AGMNEEQVRHAVSLIRTTMEMVEQLPQPVIAAINGIALGGGLELALACDFRIAAESASLG 131

Query: 141 TPEASIGFHTDCGFSFIHSRLPGHLG----EFLALTGARLNGKELVAAGLATHFVPSEKL 196
             E ++      G +    RLP  +G    + L  TG R++ +E    GL    VP+  L
Sbjct: 132 LTETTLAIIPGAGGT---QRLPRLIGVGRAKELIYTGRRISAQEAKEIGLVEFVVPAHLL 188

Query: 197 PELEKRLIG-LNTGDEIAVKSAIEEFSEDVQLD 228
            E    +   + +   IAV+ A E  S  +Q+D
Sbjct: 189 EEKAIEIAEKIASNGPIAVRQAKEAISNGIQVD 221

Length = 260

>gnl|CDD|235705 PRK06127, PRK06127, enoyl-CoA hydratase; Provisional

 Score = 64.0 bits (156), Expect = 2e-11
 Identities = 64/268 (23%), Positives = 108/268 (40%), Gaps = 20/268 (7%)

Query: 14  VLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVG-RAFSAG 72
           +L E+ G +  +T N P + N +S  +   L + L   E DD  ++V++ G G +AF +G
Sbjct: 13  LLAEKTGGLGRITFNNPARHNAMSLDMWEALPQALAAAEDDDAIRVVVLTGAGEKAFVSG 72

Query: 73  GDLKMFYDGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSV 132
            D+  F + R+  ++       +      +  Y K  +A   G  +GGG  + +     +
Sbjct: 73  ADISQFEESRSDAEAVAAYEQAVEAAQAALADYAKPTIACIRGYCIGGGMGIALACDIRI 132

Query: 133 VTEKTVFSTPEA--SIGFHTDCGFSFIHSRLPGHLGEFLALTGARLNGKELVAAGLATHF 190
             E + F  P A   +G+  D   + +    P    +    T  R +  E +  GL    
Sbjct: 133 AAEDSRFGIPAARLGLGYGYDGVKNLVDLVGPSAAKDLF-YTARRFDAAEALRIGLVHRV 191

Query: 191 VPSEKL-PELEKRL--IGLNTGDEI-AVKSAIEEFSED-VQLDGQSVLNKQSIIDECFSK 245
             ++ L   L      I  N    + A K AI E  +D  + D  +    Q+++  CF  
Sbjct: 192 TAADDLETALADYAATIAGNAPLTLRAAKRAIAELLKDEPERDMAAC---QALVAACFDS 248

Query: 246 ETVAEIIKSFEAEAGKEGNGWIGPVLKG 273
           E   E   +F  E  K       PV KG
Sbjct: 249 EDYREGRAAF-MEKRK-------PVFKG 268

Length = 269

>gnl|CDD|181249 PRK08139, PRK08139, enoyl-CoA hydratase; Validated

 Score = 62.3 bits (152), Expect = 5e-11
 Identities = 37/143 (25%), Positives = 62/143 (43%), Gaps = 9/143 (6%)

Query: 9   PDEQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRA 68
            +  ++L E+   V  +TLNRP+  N +S  +++ L   L+    D   ++V++   G+A
Sbjct: 8   TEAPLLLREDRDGVATLTLNRPQAFNALSEAMLAALQAALDAIAADPSVRVVVLAAAGKA 67

Query: 69  FSAGGDLKMFYDGRNSKDSCLEVVYRMYWLCHH----IHTYKKTQVALAHGITMGGGASL 124
           F AG DLK     R      L     ++  C      I    +  +A  HGI    G  L
Sbjct: 68  FCAGHDLKEMRAARG-----LAYFRALFARCSRVMQAIVALPQPVIARVHGIATAAGCQL 122

Query: 125 MVPLKFSVVTEKTVFSTPEASIG 147
           +     +V  +   F+ P  +IG
Sbjct: 123 VASCDLAVAADTARFAVPGVNIG 145

Length = 266

>gnl|CDD|236073 PRK07659, PRK07659, enoyl-CoA hydratase; Provisional

 Score = 62.0 bits (151), Expect = 6e-11
 Identities = 48/184 (26%), Positives = 81/184 (44%), Gaps = 16/184 (8%)

Query: 11  EQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFS 70
           E VV+  E G V  + LNRP  LN +   ++  L + L++  +   A +V+++G GR FS
Sbjct: 6   ESVVVKYE-GRVATIMLNRPEALNALDEPMLKELLQALKEVAESS-AHIVVLRGNGRGFS 63

Query: 71  AGGDLKMFYDGRNSK------DSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASL 124
           AGGD+KM     +        ++  E+V  +Y       T  K  ++  HG   G G S+
Sbjct: 64  AGGDIKMMLSSNDESKFDGVMNTISEIVVTLY-------TMPKLTISAIHGPAAGLGLSI 116

Query: 125 MVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HLGEFLALTGARLNGKELVA 183
            +   + +       +     IG   D G  F   +  G +  + +   G +L+  E + 
Sbjct: 117 ALTADYVIADISAKLAMNFIGIGLIPDGGGHFFLQKRVGENKAKQIIWEGKKLSATEALD 176

Query: 184 AGLA 187
            GL 
Sbjct: 177 LGLI 180

Length = 260

>gnl|CDD|236115 PRK07854, PRK07854, enoyl-CoA hydratase; Provisional

 Score = 61.6 bits (150), Expect = 7e-11
 Identities = 44/175 (25%), Positives = 72/175 (41%), Gaps = 21/175 (12%)

Query: 20  GNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFY 79
           G V  + L RP + N +++++   L E + K   D+ A+ +++ G G  F AG DL    
Sbjct: 8   GQVLTIELQRPERRNALNAELCEELREAVRKAV-DESARAIVLTGQGTVFCAGADL---- 62

Query: 80  DGRNSKDSCLEVVYRMYWLCHHIHTYKKTQV---ALAHGITMGGGASLMVPLKFSVVTEK 136
            G    D   + +  M      +H      V   A  +G  +G G  L +     VV  +
Sbjct: 63  SGDVYADDFPDALIEM------LHAIDAAPVPVIAAINGPAIGAGLQLAMACDLRVVAPE 116

Query: 137 TVFSTPEASIGFHTDCGFSFIHSRLPGHLGEFLA----LTGARLNGKELVAAGLA 187
             F  P A  G   D   ++   RL   +G   A    L   +L  ++ +A G+A
Sbjct: 117 AYFQFPVAKYGIALD---NWTIRRLSSLVGGGRARAMLLGAEKLTAEQALATGMA 168

Length = 243

>gnl|CDD|181009 PRK07511, PRK07511, enoyl-CoA hydratase; Provisional

 Score = 61.6 bits (150), Expect = 9e-11
 Identities = 46/179 (25%), Positives = 70/179 (39%), Gaps = 8/179 (4%)

Query: 13  VVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAG 72
            +L    G+  ++TL+ P   N +   + +   E L   E+D   + V++ G G  F AG
Sbjct: 4   ELLSRREGSTLVLTLSNPGARNALHPDMYAAGIEALNTAERDPSIRAVVLTGAGGFFCAG 63

Query: 73  GDLKMFYDGRNSKDSCLEVVYRMYWLCHH----IHTYKKTQVALAHGITMGGGASLMVPL 128
           G+L    + R +K     V        H     I  + K  +A   G   G G SL +  
Sbjct: 64  GNLNRLLENR-AKP--PSVQAASIDGLHDWIRAIRAFPKPVIAAVEGAAAGAGFSLALAC 120

Query: 129 KFSVVTEKTVFSTPEASIGFHTDCGFS-FIHSRLPGHLGEFLALTGARLNGKELVAAGL 186
              V      F      +G   D G S F+   LP  L   L L G  ++ + L A G+
Sbjct: 121 DLLVAARDAKFVMAYVKVGLTPDGGGSWFLARALPRQLATELLLEGKPISAERLHALGV 179

Length = 260

>gnl|CDD|181325 PRK08252, PRK08252, enoyl-CoA hydratase; Provisional

 Score = 60.8 bits (148), Expect = 2e-10
 Identities = 49/185 (26%), Positives = 70/185 (37%), Gaps = 7/185 (3%)

Query: 10  DEQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAF 69
               VL E  G V ++T+NRP   N +++ V   LA  L++ + D    + I+ G G  F
Sbjct: 1   MSDEVLVERRGRVLIITINRPEARNAVNAAVAQGLAAALDELDADPDLSVGILTGAGGTF 60

Query: 70  SAGGDLKMFYDGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLK 129
            AG DLK F  G          +    +        +K  +A   G  + GG  L +   
Sbjct: 61  CAGMDLKAFARGERP------SIPGRGFGGLTERPPRKPLIAAVEGYALAGGFELALACD 114

Query: 130 FSVVTEKTVFSTPEASIGF-HTDCGFSFIHSRLPGHLGEFLALTGARLNGKELVAAGLAT 188
             V      F  PE   G      G   +  R+P H+   LALTG  L  +     GL  
Sbjct: 115 LIVAARDAKFGLPEVKRGLVAAGGGLLRLPRRIPYHIAMELALTGDMLTAERAHELGLVN 174

Query: 189 HFVPS 193
                
Sbjct: 175 RLTEP 179

Length = 254

>gnl|CDD|236383 PRK09120, PRK09120, p-hydroxycinnamoyl CoA hydratase/lyase; Validated

 Score = 60.8 bits (148), Expect = 2e-10
 Identities = 51/196 (26%), Positives = 86/196 (43%), Gaps = 11/196 (5%)

Query: 10  DEQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAF 69
               V  E    +  VTLNRP + N +S  +   + + L+  E DD A ++++ G G A+
Sbjct: 6   RWDTVKVEVEDGIAWVTLNRPEKRNAMSPTLNREMIDVLDALEFDDDAGVLVLTGAGDAW 65

Query: 70  SAGGDLKMFYDGRNSKDSCLEVVYRM------YWLCHHIHTYKKTQVALAHGITMGGGAS 123
           SAG DLK ++  R +      +  R+      +W    +  Y+K  +A+ +G   GGG S
Sbjct: 66  SAGMDLKEYF--RETDAQPEILQERIRREAYGWW--RRLRWYQKPTIAMVNGWCFGGGFS 121

Query: 124 LMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHLGE-FLALTGARLNGKELV 182
            +V    ++  ++  F   E + G     G S   +   GH    +  +TG    G++  
Sbjct: 122 PLVACDLAIAADEAQFGLSEINWGIPPGGGVSKAMADTVGHRDALYYIMTGETFTGRKAA 181

Query: 183 AAGLATHFVPSEKLPE 198
             GL    VP  +L  
Sbjct: 182 EMGLVNESVPLAQLRA 197

Length = 275

>gnl|CDD|180298 PRK05870, PRK05870, enoyl-CoA hydratase; Provisional

 Score = 60.1 bits (146), Expect = 2e-10
 Identities = 42/181 (23%), Positives = 75/181 (41%), Gaps = 9/181 (4%)

Query: 12  QVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSA 71
             VL +    V L+T+N P + N +++++ + L   +   E D     ++V G G+AF A
Sbjct: 3   DPVLLDVDDGVALITVNDPDRRNAVTAEMSAQLRAAVAAAEADPDVHALVVTGAGKAFCA 62

Query: 72  GGDLK-MFYDGRNSKDSCLEVVYRMYWLCHH--IHTYKKTQVALAHGITMGGGASLMVPL 128
           G DL  +        +  L  +Y  +       + T     +A  +G  +G G +L +  
Sbjct: 63  GADLTALGAAPGRPAEDGLRRIYDGFLAVASCPLPT-----IAAVNGAAVGAGLNLALAA 117

Query: 129 KFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HLGEFLALTGARLNGKELVAAGLA 187
              +   K +F      +G H   G +++  R  G  +     L G R + +  V  GLA
Sbjct: 118 DVRIAGPKALFDARFQKLGLHPGGGATWMLQRAVGPQVARAALLFGMRFDAEAAVRHGLA 177

Query: 188 T 188
            
Sbjct: 178 L 178

Length = 249

>gnl|CDD|180910 PRK07260, PRK07260, enoyl-CoA hydratase; Provisional

 Score = 59.4 bits (144), Expect = 4e-10
 Identities = 47/196 (23%), Positives = 85/196 (43%), Gaps = 3/196 (1%)

Query: 12  QVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSA 71
           + ++ E   ++  +TLNRP   N  +  +   + E L   E+D   + +++   G+ FS 
Sbjct: 2   EHIIYEVEDDLATLTLNRPEVSNGFNIPMCQEILEALRLAEEDPSVRFLLINANGKVFSV 61

Query: 72  GGDLKMFYDGRNSKD--SCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLK 129
           GGDL       +  D  S +++   +  +   I    K  +    G   G  A++ V   
Sbjct: 62  GGDLVEMKRAVDEDDVQSLVKIAELVNEISFAIKQLPKPVIMCVDGAVAGAAANMAVAAD 121

Query: 130 FSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HLGEFLALTGARLNGKELVAAGLAT 188
           F + + KT F      +G   D G  F+ +R  G +    LA+TG  L  ++ +  G   
Sbjct: 122 FCIASTKTKFIQAFVGVGLAPDAGGLFLLTRAIGLNRATHLAMTGEALTAEKALEYGFVY 181

Query: 189 HFVPSEKLPELEKRLI 204
               SEKL +  ++L+
Sbjct: 182 RVAESEKLEKTCEQLL 197

Length = 255

>gnl|CDD|178269 PLN02664, PLN02664, enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase

 Score = 59.5 bits (144), Expect = 5e-10
 Identities = 53/209 (25%), Positives = 83/209 (39%), Gaps = 28/209 (13%)

Query: 5   VVKNPDEQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKG 64
           + K+P+  V           + LNRP Q N +S    +   + L   +++    ++I+ G
Sbjct: 10  IQKSPNSSVFH---------LNLNRPSQRNALSLDFFTEFPKALSSLDQNPNVSVIILSG 60

Query: 65  VGRAFSAGGDLKMFYD----------GRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALAH 114
            G  F +G DLK              GR+ +    ++ + +      I   +K  +A  H
Sbjct: 61  AGDHFCSGIDLKTLNSISEQSSSGDRGRSGERLRRKIKF-LQDAITAIEQCRKPVIAAIH 119

Query: 115 GITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHLG----EFLA 170
           G  +GGG  ++        +E   FS  E  +    D G      RLP  +G      LA
Sbjct: 120 GACIGGGVDIVTACDIRYCSEDAFFSVKEVDLAITADLG---TLQRLPSIVGYGNAMELA 176

Query: 171 LTGARLNGKELVAAGLATH-FVPSEKLPE 198
           LTG R +G E    GL +  F   E L E
Sbjct: 177 LTGRRFSGSEAKELGLVSRVFGSKEDLDE 205

Length = 275

>gnl|CDD|180472 PRK06210, PRK06210, enoyl-CoA hydratase; Provisional

 Score = 59.3 bits (144), Expect = 5e-10
 Identities = 52/188 (27%), Positives = 85/188 (45%), Gaps = 13/188 (6%)

Query: 22  VRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMF--- 78
           V ++TLNRP +LN  +  + + +   +++ E D   +++++ G GR F AG D+      
Sbjct: 16  VAVITLNRPDRLNAWTPVMEAEVYAAMDRAEADPAVRVIVLTGAGRGFCAGADMGELQTI 75

Query: 79  --YDGRNSKDSCLEVVYR---MYWLCHHIHTYKKTQVALAHGITMGGGA--SLMVPLKFS 131
              DGR   D    V  R        H +   +K  +A  +G   G G   +LM  ++F+
Sbjct: 76  DPSDGRRDTDVRPFVGNRRPDYQTRYHFLTALRKPVIAAINGACAGIGLTHALMCDVRFA 135

Query: 132 VVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHLGEF-LALTGARLNGKELVAAGLATHF 190
              +   F+T  A  G   + G S+I  RL GH     L L+      +E +  GL    
Sbjct: 136 --ADGAKFTTAFARRGLIAEHGISWILPRLVGHANALDLLLSARTFYAEEALRLGLVNRV 193

Query: 191 VPSEKLPE 198
           VP ++L E
Sbjct: 194 VPPDELME 201

Length = 272

>gnl|CDD|178210 PLN02600, PLN02600, enoyl-CoA hydratase

 Score = 58.3 bits (141), Expect = 9e-10
 Identities = 65/241 (26%), Positives = 103/241 (42%), Gaps = 42/241 (17%)

Query: 25  VTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKG-VGRAFSAGGDLK------- 76
           + L+RP   N I  +++  L    EK + D  A++V+++  V   F AG DLK       
Sbjct: 8   LRLDRPEAKNAIGKEMLRGLRSAFEKIQADASARVVMLRSSVPGVFCAGADLKERRKMSP 67

Query: 77  ----MFYDGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSV 132
                F +   S  S LE +         I T     +A+  G  +GGG  L +     +
Sbjct: 68  SEVQKFVNSLRSTFSSLEAL--------SIPT-----IAVVEGAALGGGLELALSCDLRI 114

Query: 133 VTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHLGEFLA----LTGARLNGKELVAAGLAT 188
             E+ VF  PE  +      G +    RLP  +G   A     TG R+  +E  + GL  
Sbjct: 115 CGEEAVFGLPETGLAIIPGAGGT---QRLPRLVGRSRAKELIFTGRRIGAREAASMGLVN 171

Query: 189 HFVPS----EKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFS 244
           + VP+    EK  EL +    +N    +A+K A +  +E  ++D  S L    I +EC+ 
Sbjct: 172 YCVPAGEAYEKALELAQE---INQKGPLAIKMAKKAINEGSEVDMASGL---EIEEECYE 225

Query: 245 K 245
           +
Sbjct: 226 Q 226

Length = 251

>gnl|CDD|179599 PRK03580, PRK03580, carnitinyl-CoA dehydratase; Provisional

 Score = 58.6 bits (142), Expect = 1e-09
 Identities = 50/186 (26%), Positives = 82/186 (44%), Gaps = 16/186 (8%)

Query: 20  GNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVG-RAFSAGGDLKMF 78
           G++  +TL+RP+  N I +K    + E    +  D + ++ I+ G G + FSAG DLK  
Sbjct: 11  GSILEITLDRPKA-NAIDAKTSFAMGEVFLNFRDDPELRVAIITGAGEKFFSAGWDLKAA 69

Query: 79  YDGRNSKDSCLEVVYRMYWL-----CHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVV 133
            +G        E     +          I    K  +A  +G   GGG  L +   F V 
Sbjct: 70  AEG--------EAPDADFGPGGFAGLTEIFDLDKPVIAAVNGYAFGGGFELALAADFIVC 121

Query: 134 TEKTVFSTPEASIGFHTDCG-FSFIHSRLPGHLGEFLALTGARLNGKELVAAGLATHFVP 192
            +   F+ PEA +G   D G    +  RLP  +   + +TG R++ +E +  G+    VP
Sbjct: 122 ADNASFALPEAKLGIVPDSGGVLRLPKRLPPAIANEMVMTGRRMDAEEALRWGIVNRVVP 181

Query: 193 SEKLPE 198
             +L +
Sbjct: 182 QAELMD 187

Length = 261

>gnl|CDD|168580 PRK06495, PRK06495, enoyl-CoA hydratase; Provisional

 Score = 57.8 bits (140), Expect = 2e-09
 Identities = 56/204 (27%), Positives = 86/204 (42%), Gaps = 18/204 (8%)

Query: 20  GNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFY 79
            +V +VTL+ P  +N +S ++   L    ++  +    ++V++ G G+ F AG DLK   
Sbjct: 12  DHVAVVTLDNP-PVNALSRELRDELIAVFDEISERPDVRVVVLTGAGKVFCAGADLK--- 67

Query: 80  DGRNSKDSCLEVVY---RMYWLCHH-IHTYKKTQVALAHGITMGGGASLMVPLKFSVVTE 135
            GR         +    R    C H I    K  +A  +G  +G G  L+      V +E
Sbjct: 68  -GRPDVIKGPGDLRAHNRRTRECFHAIRECAKPVIAAVNGPALGAGLGLVASCDIIVASE 126

Query: 136 KTVFSTPEASIGFHTDCGFSFIHSRLPGH-LGEFLALTGARLNGKELVAAGLATHFVPSE 194
             VF  PE  +G       +    RL GH L   + LTG R+   EL   G+    +P E
Sbjct: 127 NAVFGLPEIDVGLAGGGKHA---MRLFGHSLTRRMMLTGYRVPAAELYRRGVIEACLPPE 183

Query: 195 KLPELEKRLIGLNTGDEIAVKSAI 218
           +L      +       EIA KS +
Sbjct: 184 ELMPEAMEI-----AREIASKSPL 202

Length = 257

>gnl|CDD|168351 PRK06023, PRK06023, enoyl-CoA hydratase; Provisional

 Score = 56.0 bits (135), Expect = 6e-09
 Identities = 59/249 (23%), Positives = 108/249 (43%), Gaps = 26/249 (10%)

Query: 22  VRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFY-- 79
           V+++  NRP + N I+  + + +A+ L+  + DD  +  +  G    FSAG D++ F   
Sbjct: 16  VQVIRFNRPEKKNAITRAMYATMAKALKAADADDAIRAHVFLGTEGCFSAGNDMQDFLAA 75

Query: 80  --DGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKT 137
              G +     L+ +  +          +K  V+   G+ +G G ++ +    +  + ++
Sbjct: 76  AMGGTSFGSEILDFLIALA-------EAEKPIVSGVDGLAIGIGTTIHLHCDLTFASPRS 128

Query: 138 VFSTPEASIGFHTDCGFSFIHSRLPGHLGEF--LALTGARLNGKELVAAGLATHFVPSEK 195
           +F TP   +    + G S +  RL GH   F  LAL G   + +    AGL    V  E 
Sbjct: 129 LFRTPFVDLALVPEAGSSLLAPRLMGHQRAFALLAL-GEGFSAEAAQEAGLIWKIVDEE- 186

Query: 196 LPELEKRLIGLNTGDEIAVK--SAIEEFSEDVQLDGQSVLNKQSIIDECFSKETVAEIIK 253
              +E   +      E+A K   A++   + ++   + +L +   IDE    +  A  +K
Sbjct: 187 --AVEAETLKAAE--ELAAKPPQALQIARDLMRGPREDILAR---IDE--EAKHFAARLK 237

Query: 254 SFEAEAGKE 262
           S EA A  E
Sbjct: 238 SAEARAAFE 246

Length = 251

>gnl|CDD|236213 PRK08272, PRK08272, enoyl-CoA hydratase; Provisional

 Score = 56.2 bits (136), Expect = 7e-09
 Identities = 49/222 (22%), Positives = 79/222 (35%), Gaps = 55/222 (24%)

Query: 20  GNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFY 79
           G +  +TLNRP + N I++     L   +E+ + D    +++V G G+ F AG DL  + 
Sbjct: 18  GRIARITLNRPEKGNAITADTPLELRAAVERADLDPGVHVILVSGAGKGFCAGYDLSAYA 77

Query: 80  DGRNSKDS--------------------------CLEVVYRMYWLCHHIHTYKKTQVALA 113
           +G +S                              +    R +    H H   K  VA  
Sbjct: 78  EGSSSGGGGGAYPGKRQAVNHLPDDPWDPMIDYQMMSRFVRGFMSLWHAH---KPTVAKV 134

Query: 114 HGITMGGGASLMVPLKFSVVTEKT--------VFSTPEASIGFHTDCGFSFIHSRLPGHL 165
           HG  + GG  + +     +  +          V+  P   +  +               L
Sbjct: 135 HGYCVAGGTDIALHCDQVIAADDAKIGYPPTRVWGVPATGMWAY--------------RL 180

Query: 166 G----EFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRL 203
           G    + L  TG  + G +    GLA   VP E+L E  +RL
Sbjct: 181 GPQRAKRLLFTGDCITGAQAAEWGLAVEAVPPEELDERTERL 222

Length = 302

>gnl|CDD|180424 PRK06144, PRK06144, enoyl-CoA hydratase; Provisional

 Score = 55.8 bits (135), Expect = 8e-09
 Identities = 49/185 (26%), Positives = 80/185 (43%), Gaps = 14/185 (7%)

Query: 20  GNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVG-RAFSAGGDLKMF 78
           G +  +T NRP   N ++  +   LAE  E    D   + V+++G G +AF AG D+  F
Sbjct: 16  GGIARITFNRPAARNAMTWAMYEGLAEICEAIAADPSIRAVVLRGAGDKAFVAGTDIAQF 75

Query: 79  YDGRNSKDSCLEVVY--RMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEK 136
                ++D+   V Y  R+  +   +   +   +A   G  +GGGA++       + T  
Sbjct: 76  RAFSTAEDA---VAYERRIDRVLGALEQLRVPTIAAIAGACVGGGAAIAAACDLRIATPS 132

Query: 137 TVFSTPEA-SIGFHTDCGFSFIHSRLPGHLG----EFLALTGARLNGKELVAAGLATHFV 191
             F  P A ++G   +C      +RL   LG    + +  T   L  +E +AAGL    V
Sbjct: 133 ARFGFPIARTLG---NCLSMSNLARLVALLGAARVKDMLFTARLLEAEEALAAGLVNEVV 189

Query: 192 PSEKL 196
               L
Sbjct: 190 EDAAL 194

Length = 262

>gnl|CDD|181122 PRK07799, PRK07799, enoyl-CoA hydratase; Provisional

 Score = 55.5 bits (134), Expect = 9e-09
 Identities = 73/336 (21%), Positives = 116/336 (34%), Gaps = 96/336 (28%)

Query: 15  LGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGD 74
           L E+ G+  +VT+NRP   N +S++++ ++ +  ++ + D   +  I+ G G AF AG D
Sbjct: 8   LVEQRGHTLIVTMNRPEARNALSTEMLRIMVDAWDRVDNDPDIRSCILTGAGGAFCAGMD 67

Query: 75  LKMF--------YDGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMV 126
           LK          +   +   S ++ + +   L        K  +A   G  + GG  ++ 
Sbjct: 68  LKAATKKPPGDSFKDGSYDPSRIDALLKGRRL-------TKPLIAAVEGPAIAGGTEILQ 120

Query: 127 PLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLP-----GHLGEFLALTGARLNGKEL 181
                V  E   F   EA        G +    RL          + L LTG  +   E 
Sbjct: 121 GTDIRVAGESAKFGISEAKWSLFPMGGSAV---RLVRQIPYTVACDLL-LTGRHITAAEA 176

Query: 182 VAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDE 241
              GL  H VP                 D  A+  A+E                      
Sbjct: 177 KEIGLIGHVVP-----------------DGQALDKALE---------------------- 197

Query: 242 CFSKETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECL 301
                 +AE+I           NG             P  ++  LR++RE       E  
Sbjct: 198 ------LAELI---------NANG-------------PLAVQAILRTIRETEGMHENEAF 229

Query: 302 KKEFRLTINILRAIISADIYEGIRALTIEKDNAPKW 337
           K + ++ I +     S D  EG RA   EK  AP +
Sbjct: 230 KIDTKIGIPVFL---SEDAKEGPRAFA-EK-RAPNF 260

Length = 263

>gnl|CDD|235714 PRK06142, PRK06142, enoyl-CoA hydratase; Provisional

 Score = 54.2 bits (131), Expect = 3e-08
 Identities = 52/182 (28%), Positives = 74/182 (40%), Gaps = 20/182 (10%)

Query: 20  GNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMF- 78
            +V  VTLNRP + N ++    S L E     + D + + V++ G G+ FS G DL    
Sbjct: 14  DHVAQVTLNRPGKGNAMNPAFWSELPEIFRWLDADPEVRAVVLSGSGKHFSYGIDLPAMA 73

Query: 79  ---------YDGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLK 129
                       R   D     + R+    + +   +K  +A   G  +GGG  L+    
Sbjct: 74  GVFGQLGKDGLARPRTD-LRREILRLQAAINAVADCRKPVIAAVQGWCIGGGVDLISACD 132

Query: 130 FSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLP-----GHLGEFLALTGARLNGKELVAA 184
               +    FS  E  +G   D G S    RLP     GHL E LALTG  ++  E    
Sbjct: 133 MRYASADAKFSVREVDLGMVADVG-SL--QRLPRIIGDGHLRE-LALTGRDIDAAEAEKI 188

Query: 185 GL 186
           GL
Sbjct: 189 GL 190

Length = 272

>gnl|CDD|132254 TIGR03210, badI, 2-ketocyclohexanecarboxyl-CoA hydrolase

 Score = 53.4 bits (128), Expect = 5e-08
 Identities = 54/201 (26%), Positives = 83/201 (41%), Gaps = 24/201 (11%)

Query: 25  VTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVG-RAFSAGGDLKMF---YD 80
           + +NRP ++N    +    L   L+    D Q  ++++ G G +AF  GGD       YD
Sbjct: 15  IMINRPAKMNAFRGQTCDELIHALKDAGYDRQIGVIVLAGAGDKAFCTGGDQSTHDGGYD 74

Query: 81  GRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFS 140
           GR +      +   M  L   I    K  +A   G  +GGG  L+     ++ +EK  F 
Sbjct: 75  GRGT------IGLPMEELHSAIRDVPKPVIARVQGYAIGGGNVLVTICDLTIASEKAQFG 128

Query: 141 TPEASIGFHTDCGFSFIHSRLPGHLGEFLA----LTGARLNGKELVAAGLATHFVPSEKL 196
                +G   D G+    + L   +GE  A        R   +E +A GL    VP ++L
Sbjct: 129 QVGPKVG-SVDPGYG--TALLARVVGEKKAREIWYLCRRYTAQEALAMGLVNAVVPHDQL 185

Query: 197 -PELEKRLIGLNTGDEIAVKS 216
             E++K        DEI  KS
Sbjct: 186 DAEVQK------WCDEIVEKS 200

Members of this protein family are 2-ketocyclohexanecarboxyl-CoA hydrolase, a ring-opening enzyme that acts in catabolism of molecules such as benzoyl-CoA and cyclohexane carboxylate. It converts -ketocyclohexanecarboxyl-CoA to pimelyl-CoA. It is not sensitive to oxygen. Length = 256

>gnl|CDD|236206 PRK08260, PRK08260, enoyl-CoA hydratase; Provisional

 Score = 53.1 bits (128), Expect = 6e-08
 Identities = 52/206 (25%), Positives = 77/206 (37%), Gaps = 52/206 (25%)

Query: 25  VTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDL----KMF-Y 79
           +TLNRP +LN  +  +   L E  +  + DD  + VIV G GRAF AG DL      F  
Sbjct: 17  ITLNRPDKLNAFTVTMARELIEAFDAADADDAVRAVIVTGAGRAFCAGADLSAGGNTFDL 76

Query: 80  DGRNS-----------------KDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGA 122
           D   +                 +D    V  R       I    K  +A  +G  +G GA
Sbjct: 77  DAPRTPVEADEEDRADPSDDGVRDGGGRVTLR-------IFDSLKPVIAAVNGPAVGVGA 129

Query: 123 SLMVPLKFSVVTEKT----VFS----TPEASIGFHTDCGFSFIHSRLPGHLGEFLAL--- 171
           ++ + +   + +       VF      PEA           F    LP  +G   AL   
Sbjct: 130 TMTLAMDIRLASTAARFGFVFGRRGIVPEA-------ASSWF----LPRLVGLQTALEWV 178

Query: 172 -TGARLNGKELVAAGLATHFVPSEKL 196
            +G   + +E +  GL     P ++L
Sbjct: 179 YSGRVFDAQEALDGGLVRSVHPPDEL 204

Length = 296

>gnl|CDD|181723 PRK09245, PRK09245, enoyl-CoA hydratase; Provisional

 Score = 51.5 bits (124), Expect = 2e-07
 Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 1/64 (1%)

Query: 14 VLGEEIGNVRLVTLNRPRQLNVIS-SKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAG 72
          +L E  G++  +T+NRP   N +S +  V  L         D   + VI+ G G AFS+G
Sbjct: 5  LLVERDGHIVTLTMNRPETRNALSDNDAVDALVAACAAINADRSVRAVILTGAGTAFSSG 64

Query: 73 GDLK 76
          G++K
Sbjct: 65 GNVK 68

Length = 266

>gnl|CDD|168278 PRK05864, PRK05864, enoyl-CoA hydratase; Provisional

 Score = 51.4 bits (123), Expect = 3e-07
 Identities = 49/185 (26%), Positives = 85/185 (45%), Gaps = 13/185 (7%)

Query: 22  VRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKM---- 77
           + L+TLNRP ++N ++  V+  L E L +   D+  ++V++ G GR FS+G D K     
Sbjct: 20  IALITLNRPERMNSMAFDVMVPLKEALAEVSYDNSVRVVVLTGAGRGFSSGADHKSAGVV 79

Query: 78  -FYDGRNSKDSCL---EVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVV 133
              +G       L   E++  +      +H   +  +A  +G  +GGG  L +     V 
Sbjct: 80  PHVEGLTRPTYALRSMELLDDVILALRRLH---QPVIAAVNGPAIGGGLCLALAADIRVA 136

Query: 134 TEKTVFSTPEASIGFH-TDCGFSFIHSRLPGHLGEF-LALTGARLNGKELVAAGLATHFV 191
           +    F     + G   ++ G S++  R  G    F + LTG  ++ +E    GL +  V
Sbjct: 137 SSSAYFRAAGINNGLTASELGLSYLLPRAIGSSRAFEIMLTGRDVDAEEAERIGLVSRQV 196

Query: 192 PSEKL 196
           P E+L
Sbjct: 197 PDEQL 201

Length = 276

>gnl|CDD|180423 PRK06143, PRK06143, enoyl-CoA hydratase; Provisional

 Score = 51.2 bits (123), Expect = 3e-07
 Identities = 48/190 (25%), Positives = 81/190 (42%), Gaps = 16/190 (8%)

Query: 14  VLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVG-RAFSAG 72
           V  ++ G   L T+     LN++ + V+  L + L     D   ++++++G G +AF  G
Sbjct: 10  VTRDDRGVATL-TIRNAGSLNILGTPVILALTQALRWLAADPDVRVLVLRGAGEKAFIGG 68

Query: 73  GDLK-MFYDGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFS 131
            D+K M       + S    + R+  LC  +  +    +A   G  +GGG  L       
Sbjct: 69  ADIKEM---ATLDQASAEAFISRLRDLCDAVRHFPVPVIARIPGWCLGGGLELAAACDLR 125

Query: 132 VVTEKTVFSTPEASIGFHTDCGFSFIHSRL-PGHLGE----FLALTGARLNGKELVAAGL 186
           +      F  PE  +G       S IH+ L P  +G     +L LTG  ++  + +A GL
Sbjct: 126 IAAHDAQFGMPEVRVGIP-----SVIHAALLPRLIGWARTRWLLLTGETIDAAQALAWGL 180

Query: 187 ATHFVPSEKL 196
               VP  +L
Sbjct: 181 VDRVVPLAEL 190

Length = 256

>gnl|CDD|215480 PLN02888, PLN02888, enoyl-CoA hydratase

 Score = 50.9 bits (122), Expect = 3e-07
 Identities = 24/75 (32%), Positives = 45/75 (60%), Gaps = 3/75 (4%)

Query: 1  MAQGVVKNPDEQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLV 60
          M Q V +N    +++ +    +  +T+NRP+ LN ++  ++  LA   ++ ++DD  K++
Sbjct: 2  MTQTVSENL---ILVPKSRNGIATITINRPKALNALTRPMMVELAAAFKRLDEDDSVKVI 58

Query: 61 IVKGVGRAFSAGGDL 75
          I+ G GRAF +G DL
Sbjct: 59 ILTGSGRAFCSGVDL 73

Length = 265

>gnl|CDD|235991 PRK07327, PRK07327, enoyl-CoA hydratase; Provisional

 Score = 50.8 bits (122), Expect = 3e-07
 Identities = 28/100 (28%), Positives = 50/100 (50%)

Query: 22  VRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDG 81
           V  + LN P  LN   +++   LA+     ++D   ++V+++G G+AFSAGGDL +  + 
Sbjct: 22  VLEIVLNGPGALNAADARMHRELADIWRDVDRDPDVRVVLIRGEGKAFSAGGDLALVEEM 81

Query: 82  RNSKDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGG 121
            +  +    V      L +++    K  V+  HG  +G G
Sbjct: 82  ADDFEVRARVWREARDLVYNVINCDKPIVSAIHGPAVGAG 121

Length = 268

>gnl|CDD|200143 TIGR01929, menB, naphthoate synthase (dihydroxynaphthoic acid synthetase)

 Score = 50.6 bits (121), Expect = 4e-07
 Identities = 55/221 (24%), Positives = 92/221 (41%), Gaps = 24/221 (10%)

Query: 25  VTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVG-RAFSAGGDLKM------ 77
           +T+NRP+  N      V  + + L+   +D    +VI+ G G +AF +GGD K+      
Sbjct: 16  ITINRPQVRNAFRPLTVKEIIQALDDAREDPDIGVVILTGAGDKAFCSGGDQKVRGDYGY 75

Query: 78  FYDGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKT 137
             D    + + L+V  R       I T  K  +A+ +G  +GGG  L +    ++  E  
Sbjct: 76  IDDSGVHRLNVLDV-QRQ------IRTCPKPVIAMVNGYAIGGGHVLHMMCDLTIAAENA 128

Query: 138 VFSTPEASIG-FHTDCGFSFIHSRLPGHLGEFLALTGARLNGKELVAAGLATHFVPSEKL 196
            F      +G F    G S++   +       +     + + K+ +  GL    VP    
Sbjct: 129 RFGQTGPKVGSFDGGYGSSYMARIVGQKKAREIWFLCRQYDAKQALDMGLVNTVVPLA-- 186

Query: 197 PELEKRLIGLNTGDEIAVKS--AIE--EFSEDVQLDGQSVL 233
            +LEK  +      EI  KS  AI   + + +   DGQ+ L
Sbjct: 187 -DLEKETVRWCR--EILQKSPMAIRMLKAALNADCDGQAGL 224

This model represents an enzyme, naphthoate synthase (dihydroxynaphthoic acid synthetase), which is involved in the fifth step of the menaquinone biosynthesis pathway. Together with o-succinylbenzoate-CoA ligase (menE: TIGR01923), this enzyme takes 2-succinylbenzoate and converts it into 1,4-di-hydroxy-2-naphthoate. Included above the trusted cutoff are two enzymes from Arabadopsis thaliana and one from Staphylococcus aureus which are identified as putative enoyl-CoA hydratase/isomerases. These enzymes group with the naphthoate synthases when building a tree and when doing BLAST searches [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 259

>gnl|CDD|236163 PRK08140, PRK08140, enoyl-CoA hydratase; Provisional

 Score = 49.9 bits (120), Expect = 6e-07
 Identities = 51/185 (27%), Positives = 80/185 (43%), Gaps = 14/185 (7%)

Query: 10  DEQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAF 69
             + +L      V  +TLNRP +LN  + ++   L E L++ E DD A+ +++ G GR F
Sbjct: 2   MYETILLAIEAGVATLTLNRPDKLNSFTREMHRELREALDQVE-DDGARALLLTGAGRGF 60

Query: 70  SAGGDLKMFYDGRNSKDSCL----EVVYRMYW-LCHHIHTYKKTQVALAHGITMGGGASL 124
            AG DL    D   +    +    E +   Y  L   +       +A  +G+  G GA+L
Sbjct: 61  CAGQDLA---DRDVTPGGAMPDLGESIETFYNPLVRRLRALPLPVIAAVNGVAAGAGANL 117

Query: 125 MVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGH---LGEFLALTGARLNGKEL 181
            +     +      F      IG   D G ++   RL G    LG  LAL G +L+ ++ 
Sbjct: 118 ALACDIVLAARSASFIQAFVKIGLVPDSGGTWFLPRLVGMARALG--LALLGEKLSAEQA 175

Query: 182 VAAGL 186
              GL
Sbjct: 176 EQWGL 180

Length = 262

>gnl|CDD|235661 PRK05981, PRK05981, enoyl-CoA hydratase; Provisional

 Score = 49.3 bits (118), Expect = 1e-06
 Identities = 45/189 (23%), Positives = 73/189 (38%), Gaps = 18/189 (9%)

Query: 20  GNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWE-KDDQAKLVIVKGVGRAFSAGGDLKMF 78
           G V ++TL+ P  +N +S  ++  LAE L+  E    + + +++ G GR F  G +L+  
Sbjct: 12  GGVAILTLDHPEVMNAVSIDMLGGLAEALDAIEDGKAEVRCLVLTGAGRGFCTGANLQ-- 69

Query: 79  YDGRNSKD----------SCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPL 128
             GR S            + LE  Y        +       V   +G   G G S  +  
Sbjct: 70  --GRGSGGRESDSGGDAGAALETAYHP--FLRRLRNLPCPIVTAVNGPAAGVGMSFALMG 125

Query: 129 KFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHLGEF-LALTGARLNGKELVAAGLA 187
              +      F      IG   D G +++  RL G      L+L G +L  +  +  GL 
Sbjct: 126 DLILCARSAYFLQAFRRIGLVPDGGSTWLLPRLVGKARAMELSLLGEKLPAETALQWGLV 185

Query: 188 THFVPSEKL 196
              V   +L
Sbjct: 186 NRVVDDAEL 194

Length = 266

>gnl|CDD|181008 PRK07509, PRK07509, enoyl-CoA hydratase; Provisional

 Score = 49.1 bits (118), Expect = 1e-06
 Identities = 41/181 (22%), Positives = 67/181 (37%), Gaps = 26/181 (14%)

Query: 25  VTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNS 84
           V LNRP ++N +   +   L   +++ +KD   + VI+ G G AF AG D+K      + 
Sbjct: 16  VRLNRPDKMNALDFAMFEELIATIKRLKKDRGIRAVILSGEGGAFCAGLDVKSV--ASSP 73

Query: 85  KDSCLEVVYRMYWLCHHIHTYKKT--QVALA------------HGITMGGGASLMVPLKF 130
            ++       +  L   +        +V+L              G+  GGG  + +    
Sbjct: 74  GNA-------VKLLFKRLPGNANLAQRVSLGWRRLPVPVIAALEGVCFGGGLQIALGADI 126

Query: 131 SVVTEKTVFSTPEASIGFHTDCGFSFIHSRL--PGHLGEFLALTGARLNGKELVAAGLAT 188
            +    T  S  EA  G   D   +     L       E L  T    + +E +  GL T
Sbjct: 127 RIAAPDTKLSIMEAKWGLVPDMAGTVSLRGLVRKDVARE-LTYTARVFSAEEALELGLVT 185

Query: 189 H 189
           H
Sbjct: 186 H 186

Length = 262

>gnl|CDD|236908 PRK11423, PRK11423, methylmalonyl-CoA decarboxylase; Provisional

 Score = 48.5 bits (116), Expect = 2e-06
 Identities = 41/192 (21%), Positives = 80/192 (41%), Gaps = 11/192 (5%)

Query: 10  DEQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVG-RA 68
             Q V    I  +  +T N P + N +S  ++  L + L    + +   +++    G + 
Sbjct: 2   SMQYVNVVTINKIATITFNNPAKRNALSKVLIDDLMQALSDLNRPEIRVVILRAPSGSKV 61

Query: 69  FSAGGDLK-MFYDGRN--SKDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLM 125
           +SAG D+  +   GR+  S D  L  + RM      I  + K  +A+  G   GG   L+
Sbjct: 62  WSAGHDIHELPSGGRDPLSYDDPLRQILRM------IQKFPKPVIAMVEGSVWGGAFELI 115

Query: 126 VPLKFSVVTEKTVFSTPEASIGF-HTDCGFSFIHSRLPGHLGEFLALTGARLNGKELVAA 184
           +     +    + F+   A++G  +   G     +    H+ + +  T + +  +  +A 
Sbjct: 116 MSCDLIIAASTSTFAMTPANLGVPYNLSGILNFTNDAGFHIVKEMFFTASPITAQRALAV 175

Query: 185 GLATHFVPSEKL 196
           G+  H V  E+L
Sbjct: 176 GILNHVVEVEEL 187

Length = 261

>gnl|CDD|168168 PRK05674, PRK05674, gamma-carboxygeranoyl-CoA hydratase; Validated

 Score = 46.7 bits (111), Expect = 7e-06
 Identities = 38/171 (22%), Positives = 73/171 (42%), Gaps = 1/171 (0%)

Query: 27  LNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLK-MFYDGRNSK 85
           L+R  + N  +++++  L   L++ + D   + ++++G GR FSAG DL  M        
Sbjct: 21  LSRADKNNAFNAQMIRELILALDQVQSDASLRFLLLRGRGRHFSAGADLAWMQQSADLDY 80

Query: 86  DSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEAS 145
           ++ L+    +  L ++++  K   +A+  G   GG   L+     ++  +   F   E  
Sbjct: 81  NTNLDDARELAELMYNLYRLKIPTLAVVQGAAFGGALGLISCCDMAIGADDAQFCLSEVR 140

Query: 146 IGFHTDCGFSFIHSRLPGHLGEFLALTGARLNGKELVAAGLATHFVPSEKL 196
           IG        F+   +        ALT  R +G+     GL     P+ +L
Sbjct: 141 IGLAPAVISPFVVKAIGERAARRYALTAERFDGRRARELGLLAESYPAAEL 191

Length = 265

>gnl|CDD|131493 TIGR02440, FadJ, fatty oxidation complex, alpha subunit FadJ

 Score = 46.0 bits (109), Expect = 2e-05
 Identities = 46/181 (25%), Positives = 82/181 (45%), Gaps = 14/181 (7%)

Query: 21  NVRLVTLNRP-RQLNVISSKVVSLLAEYLEKWEKDDQAK-LVIVKGVGRAFSAGGDLKMF 78
            + ++T++ P  ++N + ++    ++E L + ++D   + LV+V G    F AG D+ M 
Sbjct: 10  GIAILTIDVPGEKMNTLKAEFADQVSEILSQLKRDKSIRGLVLVSGKPDNFIAGADISML 69

Query: 79  YDGRNSKDSCLEVVYRM-YWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTE-- 135
              + + ++  + + +    L   +       VA  HG  +GGG  L +     V ++  
Sbjct: 70  AACQTAGEA--KALAQQGQVLFAELEALPIPVVAAIHGACLGGGLELALACHSRVCSDDD 127

Query: 136 KTVFSTPEASIGFHTDCGFSFIHSRLPGHLGEFLA----LTGARLNGKELVAAGLATHFV 191
           KTV   PE  +G     G +    RLP  +G   A    LTG +L  K+ +  GL    V
Sbjct: 128 KTVLGLPEVQLGLLPGSGGT---QRLPRLIGVSTALDMILTGKQLRAKQALKLGLVDDVV 184

Query: 192 P 192
           P
Sbjct: 185 P 185

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog model [Fatty acid and phospholipid metabolism, Degradation]. Length = 699

>gnl|CDD|236109 PRK07827, PRK07827, enoyl-CoA hydratase; Provisional

 Score = 45.1 bits (107), Expect = 3e-05
 Identities = 45/174 (25%), Positives = 66/174 (37%), Gaps = 9/174 (5%)

Query: 20  GNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFY 79
           G V  +TL+ P   N +S+++V+ L + L     D   + V++   G  F AG DL    
Sbjct: 14  GGVATLTLDSPHNRNALSARLVAQLHDGLRAAAADPAVRAVVLTHTGGTFCAGADLSEAG 73

Query: 80  D-GRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTV 138
             G +  D+ +     M  L   I    K  +A   G    GG  L+      V   ++ 
Sbjct: 74  GGGGDPYDAAVARAREMTALLRAIVELPKPVIAAIDGHVRAGGFGLVGACDIVVAGPEST 133

Query: 139 FSTPEASIGFHTDCGFSFIH----SRLPGHLGEFLALTGARLNGKELVAAGLAT 188
           F+  EA IG       + I      RL         LTG +    E    GL T
Sbjct: 134 FALTEARIGVAP----AIISLTLLPRLSPRAAARYYLTGEKFGAAEAARIGLVT 183

Length = 260

>gnl|CDD|181174 PRK07938, PRK07938, enoyl-CoA hydratase; Provisional

 Score = 44.2 bits (105), Expect = 5e-05
 Identities = 48/202 (23%), Positives = 80/202 (39%), Gaps = 19/202 (9%)

Query: 20  GNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFY 79
             +  VT++ P  +N + S     LA+ +     D   ++V+++  GR F+AG D+K   
Sbjct: 10  PGIAEVTVDYP-PVNALPSAGWFALADAITAAGADPDTRVVVLRAEGRGFNAGVDIKEL- 67

Query: 80  DGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVF 139
                  + ++     +     ++      +A  HG  +GGG  L+      V ++   F
Sbjct: 68  QATPGFTALIDANRGCFAAFRAVYECAVPVIAAVHGFCLGGGIGLVGNADVIVASDDATF 127

Query: 140 STPE---ASIGFHTDCGFSFIH-SRL-PGHLGEFLALTGARLNGKELVAAGLATHFVPSE 194
             PE    ++G  T       H  RL P HL   L  T A +   EL   G     VP +
Sbjct: 128 GLPEVDRGALGAAT-------HLQRLVPQHLMRALFFTAATITAAELHHFGSVEEVVPRD 180

Query: 195 KLPELEKRLIGLNTGDEIAVKS 216
           +L E    +       +IA K 
Sbjct: 181 QLDEAALEVAR-----KIAAKD 197

Length = 249

>gnl|CDD|235938 PRK07112, PRK07112, polyketide biosynthesis enoyl-CoA hydratase; Validated

 Score = 43.5 bits (103), Expect = 7e-05
 Identities = 53/247 (21%), Positives = 94/247 (38%), Gaps = 14/247 (5%)

Query: 20  GNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFY 79
           G+V  + L+RP   N I+ ++++   + L++ E    A +V+++G+   F  G D     
Sbjct: 12  GDVCFLQLHRPEAQNTINDRLIAECMDVLDRCE--HAATIVVLEGLPEVFCFGADFSAIA 69

Query: 80  DGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVF 139
           +  ++  + L     +Y L H + T     +A   G    GG   +      +  E   F
Sbjct: 70  EKPDAGRADLIDAEPLYDLWHRLATGPYVTIAHVRGKVNAGGIGFVAASDIVIADETAPF 129

Query: 140 STPEASIGFHTDCGFSFIHSRLPGHLGEFLALTGARLNGKELVAAGLATHFVP-SEKLPE 198
           S  E   G    C   F+  R+      ++ L    +  ++  + GL   +   S+ L  
Sbjct: 130 SLSELLFGLIPACVLPFLIRRIGTQKAHYMTLMTQPVTAQQAFSWGLVDAYGANSDTL-- 187

Query: 199 LEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSI----IDECFSKETVAEIIKS 254
           L K L+ L   ++ AV       S    LD   V   +        E F+       I  
Sbjct: 188 LRKHLLRLRCLNKAAVARYKSYAS---TLDDT-VAAARPAALAANIEMFADPENLRKIAR 243

Query: 255 FEAEAGK 261
           +  E GK
Sbjct: 244 Y-VETGK 249

Length = 255

>gnl|CDD|236205 PRK08259, PRK08259, enoyl-CoA hydratase; Provisional

 Score = 43.7 bits (104), Expect = 7e-05
 Identities = 25/69 (36%), Positives = 33/69 (47%)

Query: 14 VLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGG 73
          V  E  G V  V LNRP   N +     + LA+    ++ DD A + ++ G G  F AG 
Sbjct: 5  VRVERNGPVTTVILNRPEVRNAVDGPTAAALADAFRAFDADDAASVAVLWGAGGTFCAGA 64

Query: 74 DLKMFYDGR 82
          DLK    GR
Sbjct: 65 DLKAVGTGR 73

Length = 254

>gnl|CDD|180987 PRK07468, PRK07468, enoyl-CoA hydratase; Provisional

 Score = 42.4 bits (100), Expect = 2e-04
 Identities = 19/55 (34%), Positives = 34/55 (61%)

Query: 22 VRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLK 76
          V  +TLNRP + N +S+++++ L     +   D   ++V++ G G++F AGGDL 
Sbjct: 15 VATLTLNRPEKHNALSARMIAELTTAARRLAADAAVRVVVLTGAGKSFCAGGDLG 69

Length = 262

>gnl|CDD|235936 PRK07110, PRK07110, polyketide biosynthesis enoyl-CoA hydratase; Validated

 Score = 40.3 bits (95), Expect = 8e-04
 Identities = 54/243 (22%), Positives = 95/243 (39%), Gaps = 28/243 (11%)

Query: 25  VTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGG---DLKMFYDG 81
           VT+      N  S ++   L E  +   +D + K+VI+ G    F+ GG    L     G
Sbjct: 18  VTMQDRVNKNAFSDELCDQLHEAFDTIAQDPRYKVVILTGYPNYFATGGTQEGLLSLQTG 77

Query: 82  RNS-KDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFS 140
           + +  ++       +Y L  +        +A   G  +GGG  L +     V++ ++V++
Sbjct: 78  KGTFTEA------NLYSLALNCPI---PVIAAMQGHAIGGGLVLGLYADIVVLSRESVYT 128

Query: 141 TPEASIGFHTDCGFSFIHSRLPGHLGEFLA----LTGARLNGKELVAAGLATHFVP-SEK 195
                 GF    G + I   LP  LG  L     LT     G EL   G+    +P +E 
Sbjct: 129 ANFMKYGFTPGMGATAI---LPEKLGLALGQEMLLTARYYRGAELKKRGVPFPVLPRAEV 185

Query: 196 LP---ELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSII-DECFSKETVAEI 251
           L    EL + L        + +K   +    D +     V+ ++  + ++ F +  V   
Sbjct: 186 LEKALELARSLAEKPRHSLVLLK---DHLVADRRRRLPEVIEQEVAMHEKTFHQPEVKRR 242

Query: 252 IKS 254
           I+S
Sbjct: 243 IES 245

Length = 249

>gnl|CDD|236373 PRK09076, PRK09076, enoyl-CoA hydratase; Provisional

 Score = 40.3 bits (95), Expect = 9e-04
 Identities = 38/134 (28%), Positives = 61/134 (45%), Gaps = 8/134 (5%)

Query: 17  EEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAF-SAGGDL 75
           E  G+V ++TLN P   N  ++  +  L + + +   D     +++ G G  F SAG DL
Sbjct: 8   EIDGHVAILTLNNP-PANTWTADSLQALKQLVLELNADKDVYALVITGDGEKFFSAGADL 66

Query: 76  KMFYDGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPL--KFSVV 133
            +F DG   K    E+  R       +  ++   +A  +G  MGGG  L   L     + 
Sbjct: 67  NLFADG--DKAVAREMARRFGEAFEALSAFRGVSIAAINGYAMGGG--LECALACDIRIA 122

Query: 134 TEKTVFSTPEASIG 147
            E+   + PEAS+G
Sbjct: 123 EEQAQMALPEASVG 136

Length = 258

>gnl|CDD|180625 PRK06563, PRK06563, enoyl-CoA hydratase; Provisional

 Score = 39.2 bits (92), Expect = 0.002
 Identities = 20/56 (35%), Positives = 34/56 (60%)

Query: 20 GNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDL 75
          G+V L+ L+RP + N   S ++  LA  L ++E DD+ ++ ++   G  F+AG DL
Sbjct: 7  GHVLLIGLDRPAKRNAFDSAMLDDLALALGEYEADDELRVAVLFAHGEHFTAGLDL 62

Length = 255

>gnl|CDD|223524 COG0447, MenB, Dihydroxynaphthoic acid synthase [Coenzyme metabolism]

 Score = 38.6 bits (90), Expect = 0.004
 Identities = 31/126 (24%), Positives = 51/126 (40%), Gaps = 3/126 (2%)

Query: 25  VTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVG---RAFSAGGDLKMFYDG 81
           +T+NRP   N    K V  + +       D    ++++ G G   +AF +GGD K+  D 
Sbjct: 32  ITINRPEVRNAFRPKTVDEMIDAFADARDDPNVGVILLTGNGDGDKAFCSGGDQKVRGDS 91

Query: 82  RNSKDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFST 141
               D        +  L   I T  K  +A+  G  +GGG  L V    ++  +  +F  
Sbjct: 92  GGYVDDDGIPRLNVLDLQRLIRTMPKPVIAMVAGYAIGGGHVLHVVCDLTIAADNAIFGQ 151

Query: 142 PEASIG 147
               +G
Sbjct: 152 TGPKVG 157

Length = 282

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	392
KOG1684	401	consensus Enoyl-CoA hydratase [Lipid transport and	100.0
PLN02851	407	3-hydroxyisobutyryl-CoA hydrolase-like protein	100.0
PLN02988	381	3-hydroxyisobutyryl-CoA hydrolase	100.0
PLN02157	401	3-hydroxyisobutyryl-CoA hydrolase-like protein	100.0
PLN02874	379	3-hydroxyisobutyryl-CoA hydrolase-like protein	100.0
PRK05617	342	3-hydroxyisobutyryl-CoA hydrolase; Provisional	100.0
PRK05862	257	enoyl-CoA hydratase; Provisional	100.0
PRK06142	272	enoyl-CoA hydratase; Provisional	100.0
PRK05809	260	3-hydroxybutyryl-CoA dehydratase; Validated	100.0
PRK05980	260	enoyl-CoA hydratase; Provisional	100.0
PRK09076	258	enoyl-CoA hydratase; Provisional	100.0
PRK09674	255	enoyl-CoA hydratase-isomerase; Provisional	100.0
PRK06127	269	enoyl-CoA hydratase; Provisional	100.0
PRK07799	263	enoyl-CoA hydratase; Provisional	100.0
PRK08139	266	enoyl-CoA hydratase; Validated	100.0
PRK08150	255	enoyl-CoA hydratase; Provisional	100.0
PRK07658	257	enoyl-CoA hydratase; Provisional	100.0
PLN02664	275	enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA	100.0
PRK07657	260	enoyl-CoA hydratase; Provisional	100.0
TIGR02280	256	PaaB1 phenylacetate degradation probable enoyl-CoA	100.0
PRK06563	255	enoyl-CoA hydratase; Provisional	100.0
PRK08258	277	enoyl-CoA hydratase; Provisional	100.0
PRK06494	259	enoyl-CoA hydratase; Provisional	100.0
PRK08140	262	enoyl-CoA hydratase; Provisional	100.0
PRK08252	254	enoyl-CoA hydratase; Provisional	100.0
PRK09245	266	enoyl-CoA hydratase; Provisional	100.0
PLN02600	251	enoyl-CoA hydratase	100.0
PRK08138	261	enoyl-CoA hydratase; Provisional	100.0
PRK05981	266	enoyl-CoA hydratase; Provisional	100.0
PRK05995	262	enoyl-CoA hydratase; Provisional	100.0
PRK07511	260	enoyl-CoA hydratase; Provisional	100.0
PRK07659	260	enoyl-CoA hydratase; Provisional	100.0
PRK07468	262	enoyl-CoA hydratase; Provisional	100.0
PRK09120	275	p-hydroxycinnamoyl CoA hydratase/lyase; Validated	100.0
PRK05674	265	gamma-carboxygeranoyl-CoA hydratase; Validated	100.0
COG1024	257	CaiD Enoyl-CoA hydratase/carnithine racemase [Lipi	100.0
PRK06495	257	enoyl-CoA hydratase; Provisional	100.0
PRK06688	259	enoyl-CoA hydratase; Provisional	100.0
PRK07327	268	enoyl-CoA hydratase; Provisional	100.0
PRK05864	276	enoyl-CoA hydratase; Provisional	100.0
PRK06210	272	enoyl-CoA hydratase; Provisional	100.0
TIGR01929	259	menB naphthoate synthase (dihydroxynaphthoic acid	100.0
KOG1680	290	consensus Enoyl-CoA hydratase [Lipid transport and	100.0
PRK03580	261	carnitinyl-CoA dehydratase; Provisional	100.0
PRK06144	262	enoyl-CoA hydratase; Provisional	100.0
TIGR03210	256	badI 2-ketocyclohexanecarboxyl-CoA hydrolase. Memb	100.0
PRK06143	256	enoyl-CoA hydratase; Provisional	100.0
PRK06072	248	enoyl-CoA hydratase; Provisional	100.0
PRK08260	296	enoyl-CoA hydratase; Provisional	100.0
PRK07260	255	enoyl-CoA hydratase; Provisional	100.0
PRK07827	260	enoyl-CoA hydratase; Provisional	100.0
PRK11423	261	methylmalonyl-CoA decarboxylase; Provisional	100.0
PRK07509	262	enoyl-CoA hydratase; Provisional	100.0
PRK07396	273	dihydroxynaphthoic acid synthetase; Validated	100.0
PLN02888	265	enoyl-CoA hydratase	100.0
TIGR03189	251	dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hy	100.0
PRK05870	249	enoyl-CoA hydratase; Provisional	100.0
PRK08259	254	enoyl-CoA hydratase; Provisional	100.0
PRK12478	298	enoyl-CoA hydratase; Provisional	100.0
PRK06023	251	enoyl-CoA hydratase; Provisional	100.0
PRK07854	243	enoyl-CoA hydratase; Provisional	100.0
PLN02921	327	naphthoate synthase	100.0
PRK07938	249	enoyl-CoA hydratase; Provisional	100.0
PRK07112	255	polyketide biosynthesis enoyl-CoA hydratase; Valid	100.0
PF00378	245	ECH: Enoyl-CoA hydratase/isomerase family; InterPr	100.0
PLN03214	278	probable enoyl-CoA hydratase/isomerase; Provisiona	100.0
PRK08321	302	naphthoate synthase; Validated	100.0
PRK07110	249	polyketide biosynthesis enoyl-CoA hydratase; Valid	100.0
PRK06190	258	enoyl-CoA hydratase; Provisional	100.0
TIGR03222	546	benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the p	100.0
PRK08184	550	benzoyl-CoA-dihydrodiol lyase; Provisional	100.0
PRK05869	222	enoyl-CoA hydratase; Validated	100.0
PRK08290	288	enoyl-CoA hydratase; Provisional	100.0
PRK11730	715	fadB multifunctional fatty acid oxidation complex	100.0
PRK08272	302	enoyl-CoA hydratase; Provisional	100.0
PRK08788	287	enoyl-CoA hydratase; Validated	100.0
KOG1679	291	consensus Enoyl-CoA hydratase [Lipid transport and	100.0
PRK06213	229	enoyl-CoA hydratase; Provisional	100.0
PRK11154	708	fadJ multifunctional fatty acid oxidation complex	100.0
TIGR03200	360	dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hy	100.0
TIGR02440	699	FadJ fatty oxidation complex, alpha subunit FadJ.	100.0
TIGR02437	714	FadB fatty oxidation complex, alpha subunit FadB.	100.0
KOG1681	292	consensus Enoyl-CoA isomerase [Lipid transport and	100.0
PLN02267	239	enoyl-CoA hydratase/isomerase family protein	100.0
TIGR02441	737	fa_ox_alpha_mit fatty acid oxidation complex, alph	100.0
COG0447	282	MenB Dihydroxynaphthoic acid synthase [Coenzyme me	100.0
KOG0016	266	consensus Enoyl-CoA hydratase/isomerase [Lipid tra	100.0
cd06558	195	crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hy	100.0
KOG1682	287	consensus Enoyl-CoA isomerase [Lipid transport and	100.0
TIGR03222	546	benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the p	100.0
PRK08184	550	benzoyl-CoA-dihydrodiol lyase; Provisional	100.0
PF13766	118	ECH_C: 2-enoyl-CoA Hydratase C-terminal region; PD	99.96
cd07014	177	S49_SppA Signal peptide peptidase A. Signal peptid	99.75
cd07020	187	Clp_protease_NfeD_1 Nodulation formation efficienc	99.75
cd07019	211	S49_SppA_1 Signal peptide peptidase A (SppA), a se	99.56
cd00394	161	Clp_protease_like Caseinolytic protease (ClpP) is	99.49
cd07022	214	S49_Sppa_36K_type Signal peptide peptidase A (SppA	99.44
TIGR00705	584	SppA_67K signal peptide peptidase SppA, 67K type.	99.44
cd07023	208	S49_Sppa_N_C Signal peptide peptidase A (SppA), a	99.36
cd07016	160	S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP-	99.35
TIGR00706	207	SppA_dom signal peptide peptidase SppA, 36K type.	99.24
cd07021	178	Clp_protease_NfeD_like Nodulation formation effici	99.15
cd07018	222	S49_SppA_67K_type Signal peptide peptidase A (SppA	99.08
cd07015	172	Clp_protease_NfeD Nodulation formation efficiency	98.61
PRK00277	200	clpP ATP-dependent Clp protease proteolytic subuni	98.58
cd07013	162	S14_ClpP Caseinolytic protease (ClpP) is an ATP-de	98.58
KOG1683	380	consensus Hydroxyacyl-CoA dehydrogenase/enoyl-CoA	98.52
PRK12553	207	ATP-dependent Clp protease proteolytic subunit; Re	98.31
cd07017	171	S14_ClpP_2 Caseinolytic protease (ClpP) is an ATP-	98.24
PRK10949	618	protease 4; Provisional	98.21
PRK12319	256	acetyl-CoA carboxylase subunit alpha; Provisional	98.2
PF00574	182	CLP_protease: Clp protease; InterPro: IPR001907 In	98.19
PRK14512	197	ATP-dependent Clp protease proteolytic subunit; Pr	98.14
CHL00028	200	clpP ATP-dependent Clp protease proteolytic subuni	98.09
CHL00198	322	accA acetyl-CoA carboxylase carboxyltransferase al	98.09
TIGR00493	191	clpP ATP-dependent Clp protease, proteolytic subun	98.05
TIGR00513	316	accA acetyl-CoA carboxylase, carboxyl transferase,	98.05
PLN03230	431	acetyl-coenzyme A carboxylase carboxyl transferase	97.97
PRK05724	319	acetyl-CoA carboxylase carboxyltransferase subunit	97.96
PLN03229	762	acetyl-coenzyme A carboxylase carboxyl transferase	97.92
PRK14514	221	ATP-dependent Clp protease proteolytic subunit; Pr	97.79
PRK14513	201	ATP-dependent Clp protease proteolytic subunit; Pr	97.74
PRK12551	196	ATP-dependent Clp protease proteolytic subunit; Re	97.65
TIGR03133	274	malonate_beta malonate decarboxylase, beta subunit	97.59
PRK11778	330	putative inner membrane peptidase; Provisional	97.53
COG0616	317	SppA Periplasmic serine proteases (ClpP class) [Po	97.52
PRK05654	292	acetyl-CoA carboxylase subunit beta; Validated	97.39
TIGR03134	238	malonate_gamma malonate decarboxylase, gamma subun	97.38
PRK07189	301	malonate decarboxylase subunit beta; Reviewed	97.27
TIGR00515	285	accD acetyl-CoA carboxylase, carboxyl transferase,	97.25
COG0740	200	ClpP Protease subunit of ATP-dependent Clp proteas	97.17
CHL00174	296	accD acetyl-CoA carboxylase beta subunit; Reviewed	97.1
PRK12552	222	ATP-dependent Clp protease-like protein; Reviewed	97.09
PF01972	285	SDH_sah: Serine dehydrogenase proteinase; InterPro	97.0
TIGR00705	584	SppA_67K signal peptide peptidase SppA, 67K type.	96.99
PF01343	154	Peptidase_S49: Peptidase family S49 peptidase clas	96.9
TIGR01117	512	mmdA methylmalonyl-CoA decarboxylase alpha subunit	96.36
PRK10949	618	protease 4; Provisional	96.18
PLN02820	569	3-methylcrotonyl-CoA carboxylase, beta chain	96.14
PF01039	493	Carboxyl_trans: Carboxyl transferase domain; Inter	95.99
TIGR01117	512	mmdA methylmalonyl-CoA decarboxylase alpha subunit	95.67
COG0777	294	AccD Acetyl-CoA carboxylase beta subunit [Lipid me	95.51
COG1030	436	NfeD Membrane-bound serine protease (ClpP class) [	95.11
COG0825	317	AccA Acetyl-CoA carboxylase alpha subunit [Lipid m	94.88
PLN02157	401	3-hydroxyisobutyryl-CoA hydrolase-like protein	94.01
KOG0840	275	consensus ATP-dependent Clp protease, proteolytic	93.29
PF01039	493	Carboxyl_trans: Carboxyl transferase domain; Inter	92.91
COG4799	526	Acetyl-CoA carboxylase, carboxyltransferase compon	92.18
PLN02820	569	3-methylcrotonyl-CoA carboxylase, beta chain	89.35

>KOG1684 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]

Probab=100.00  E-value=9.5e-91  Score=654.40  Aligned_cols=359  Identities=44%  Similarity=0.736  Sum_probs=334.6

Q ss_pred             CCCCCCCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCC-CccccCCCchhhccCCC-
Q 016290            6 VKNPDEQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVG-RAFSAGGDLKMFYDGRN-   83 (392)
Q Consensus         6 ~~~~~~~~V~~~~~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G-~~FcaG~Dl~~l~~~~~-   83 (392)
                      +.....+.|+++.+++.++||||||+++||||.+|+..+...|..|+.++.+++||+.|+| |+|||||||+....... 
T Consensus        32 ~~~~~~~~VL~e~~~~~r~itLNRPKaLNAlnleMv~~~~~~L~~we~s~~~k~vIlkgs~~raFCAGgDI~~~ae~~~d  111 (401)
T KOG1684|consen   32 VSTDSKDQVLVEGKGCARVITLNRPKALNALNLEMVLSIYPKLVEWEKSPLVKLVILKGSGGRAFCAGGDIKAVAESIKD  111 (401)
T ss_pred             cccccCCceEEecCCceeEEEecCchhhccccHHHHHHHHHHHHhhccCCCceEEEEecCCCceeecCccHHHHHHHhhc
Confidence            3455567899999999999999999999999999999999999999999999999999997 99999999997665222 


Q ss_pred             -CchhHHHHHHHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcc
Q 016290           84 -SKDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLP  162 (392)
Q Consensus        84 -~~~~~~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~  162 (392)
                       .......||+.+|.+++.|++|.||+||+|||++||||+||++|+.||||||+|.|+|||+.||+|||+|++|+|+|++
T Consensus       112 ~~~~~~~~fF~~eYsl~~~igtY~KP~ValmdGITMGgG~GLS~hg~fRVATerT~~AmPEt~IGlfPDVG~Sy~lsrlp  191 (401)
T KOG1684|consen  112 KETPEVKKFFTEEYSLNHLIGTYLKPYVALMDGITMGGGVGLSVHGRFRVATERTVFAMPETGIGLFPDVGASYFLSRLP  191 (401)
T ss_pred             CCchHHHHHHHHHHHHHHHHHHhcCceEEEeeceeecCCcceeecceeEEeeccceecccccccccccCccceeehhhCc
Confidence             1223489999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHhhcCCcccHHHHHHcCccceecCCCChHHHHHHHHh-ccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHH
Q 016290          163 GHLGEFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIG-LNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDE  241 (392)
Q Consensus       163 G~~a~~L~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~  241 (392)
                      |..|+||+|||++++|.||+++||+|||||+++|+.++++|.. +...+.+.|++.|.+|+.++..+++.+....+.|++
T Consensus       192 g~lg~YLgLTG~rl~GaD~~~~GlATHyv~S~~l~~Lee~L~~~l~~dp~~~I~~~l~~y~~~~~~~~~~~~~~~~~i~~  271 (401)
T KOG1684|consen  192 GYLGLYLGLTGQRLSGADALRCGLATHYVPSEKLPSLEERLLKNLNDDPQSVINETLEKYASPAKDESFSLSLKLDVINK  271 (401)
T ss_pred             cHHHHhhhhccceecchHHHHhcchhhccchhhhhHHHHHHhhhcCCCcHHHHHHHHHHhcccCCCccccchhhHHHHHH
Confidence            9999999999999999999999999999999999999999984 444444789999999999987778888889999999


Q ss_pred             HhCcCCHHHHHHHHHHhh-ccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHcCCccHH
Q 016290          242 CFSKETVAEIIKSFEAEA-GKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADI  320 (392)
Q Consensus       242 ~f~~~~~eei~~~l~~~~-~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~  320 (392)
                      ||+++||||||+.|++.. ++++++||++++++|.++||+|+++|.|+|+++..+++++|+.+|+++..+++.+   +||
T Consensus       272 ~Fs~~tVeeIie~lk~~q~~~~~~ewak~tlk~L~k~SPtSLkvT~r~i~egs~~tl~~~l~~Eyr~s~~~~~~---~DF  348 (401)
T KOG1684|consen  272 CFSANTVEEIIEALKNYQQSADGSEWAKETLKTLKKMSPTSLKVTLRQIREGSKQTLDQCLTMEYRLSLRMLMR---GDF  348 (401)
T ss_pred             hhccccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcCCchHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhc---cch
Confidence            999999999999997655 4477999999999999999999999999999999999999999999999999999   999


Q ss_pred             HHHHHHHHhccCCCCCCCCCCCCCCCHHHHhcccCCCCCCccCccCc
Q 016290          321 YEGIRALTIEKDNAPKWDPPTLDKVDDDKVDLVFQPFGEDLELQIPE  367 (392)
Q Consensus       321 ~eGv~a~l~dK~r~P~w~~~~l~~v~~~~v~~~f~p~~~~~~l~~~~  367 (392)
                      .|||||.|||||++|+|+|.++++|++++|+.||.|++...+|.+|-
T Consensus       349 ~EGvRA~LIDKd~~PKW~p~~l~~V~e~~Vdn~F~~~p~~~eLklp~  395 (401)
T KOG1684|consen  349 CEGVRAVLIDKDQNPKWDPASLADVTEDEVDNYFKPLPSKSELKLPV  395 (401)
T ss_pred             hhhhhheeecCCcCCCCCCcchhhcCHHHHHHhccCCCCcccccCch
Confidence            99999999999999999999999999999999999998888898884

>PLN02851 3-hydroxyisobutyryl-CoA hydrolase-like protein

Probab=100.00  E-value=2.8e-82  Score=629.11  Aligned_cols=362  Identities=42%  Similarity=0.706  Sum_probs=328.9

Q ss_pred             CCCCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCC-C-ch
Q 016290            9 PDEQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRN-S-KD   86 (392)
Q Consensus         9 ~~~~~V~~~~~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~-~-~~   86 (392)
                      ...+.|+++..+++++||||||+++|+||.+|+.+|.++|+.|+.|++|++|||+|+|++||||+|++++..... + ..
T Consensus        39 ~~~~~v~~e~~~~~~~ItLNRP~~lNALs~~m~~eL~~al~~~~~D~~vrvVVL~G~GkaFcAGgDl~~l~~~~~~~~~~  118 (407)
T PLN02851         39 DLQDQVLVEGRAKSRAAILNRPSSLNALTIPMVARLKRLYESWEENPDIGFVLMKGSGRAFCSGADVVSLYHLINEGNVE  118 (407)
T ss_pred             CCCCCeEEEEECCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCccCCcCHHHHHhhccccchH
Confidence            344679999999999999999999999999999999999999999999999999999999999999999875321 1 12


Q ss_pred             hHHHHHHHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcchHHH
Q 016290           87 SCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHLG  166 (392)
Q Consensus        87 ~~~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G~~a  166 (392)
                      ....+|+.+|++++.|.++|||+||+|||+|||||++|+++|||||||++++|+|||++||++|++|++|+|+|++|..|
T Consensus       119 ~~~~~f~~~~~l~~~i~~~pKPvIA~v~G~amGGG~gLal~~D~rVate~a~famPE~~iGl~PdvG~s~~L~rl~g~~g  198 (407)
T PLN02851        119 ECKLFFENLYKFVYLQGTYLKPNVAIMDGITMGCGAGISIPGMFRVVTDKTVFAHPEVQMGFHPDAGASYYLSRLPGYLG  198 (407)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCEEEEEcCEEeeHHHHHHHhCCEEEEeCCceEecchhccCCCCCccHHHHHHHhcCHHH
Confidence            34678899999999999999999999999999999999999999999999999999999999999999999999999889


Q ss_pred             HHHhhcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHhCcC
Q 016290          167 EFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKE  246 (392)
Q Consensus       167 ~~L~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~~  246 (392)
                      .||+|||++++|+||+++||+||+||+++++.+.+.|.++...++..+++++++|.....+++..+...++.|++||+++
T Consensus       199 ~~L~LTG~~i~a~eA~~~GLa~~~v~~~~l~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~I~~~F~~~  278 (407)
T PLN02851        199 EYLALTGQKLNGVEMIACGLATHYCLNARLPLIEERLGKLLTDDPAVIEDSLAQYGDLVYPDKSSVLHKIETIDKCFGHD  278 (407)
T ss_pred             HHHHHhCCcCCHHHHHHCCCceeecCHhhHHHHHHHHHhhccCCHHHHHHHHHHhccccCCCcccHHHHHHHHHHHhCCC
Confidence            99999999999999999999999999999998888888877777888999999997653334456677799999999999


Q ss_pred             CHHHHHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHH---cCCccHHHHH
Q 016290          247 TVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILR---AIISADIYEG  323 (392)
Q Consensus       247 ~~eei~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~---~~~~~d~~eG  323 (392)
                      |+++|+++|+.+....+++||+++++.|.++||+|+++|+++++++...++++||++|+++..+++.   +   +||.||
T Consensus       279 sv~~I~~~L~~~~~~~~~~wa~~~~~~l~~~SP~Sl~vt~~~~~~~~~~sl~e~l~~E~~l~~~~~~~~~~---~DF~EG  355 (407)
T PLN02851        279 TVEEIIEALENEAASSYDEWCKKALKKIKEASPLSLKVTLQSIREGRFQTLDQCLAREYRISLCGVSKWVS---GDFCEG  355 (407)
T ss_pred             CHHHHHHHHHhcccccchHHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCcc---chHHHH
Confidence            9999999999743333578999999999999999999999999999999999999999999999984   6   999999


Q ss_pred             HHHHHhccCCCCCCCCCCCCCCCHHHHhcccCCCCCC-ccCccCcccCccc
Q 016290          324 IRALTIEKDNAPKWDPPTLDKVDDDKVDLVFQPFGED-LELQIPENENCRW  373 (392)
Q Consensus       324 v~a~l~dK~r~P~w~~~~l~~v~~~~v~~~f~p~~~~-~~l~~~~~~~~~~  373 (392)
                      |||.|||||++|+|+|+++++|++++|++||.|++++ .+|+||.+.++.|
T Consensus       356 VRA~LIDKd~~P~W~p~sl~~V~~~~v~~~f~~~~~~~~~l~~~~~~~~~~  406 (407)
T PLN02851        356 VRARLVDKDFAPKWDPPSLGEVSKDMVDCYFTPLDESESELELPTAQREPY  406 (407)
T ss_pred             HHHHhcCCCCCCCCCCCChhhCCHHHHHHHhCCCCCCcccccCCccccccc
Confidence            9999999999999999999999999999999999653 2799987655554

>PLN02988 3-hydroxyisobutyryl-CoA hydrolase

Probab=100.00  E-value=3.5e-82  Score=626.76  Aligned_cols=365  Identities=41%  Similarity=0.709  Sum_probs=329.1

Q ss_pred             CCCCCCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCC-Cc
Q 016290            7 KNPDEQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRN-SK   85 (392)
Q Consensus         7 ~~~~~~~V~~~~~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~-~~   85 (392)
                      .|++.+.|+++.+++|++||||||+++|+||.+|+.+|.++|+.|+.|++|++|||+|+|++||||+|++++..... +.
T Consensus         4 ~~~~~~~v~~~~~~~i~~ItLnRP~~lNALs~~m~~~L~~al~~~~~d~~v~~VVl~G~G~~FcAGgDl~~l~~~~~~~~   83 (381)
T PLN02988          4 EMASQSQVLVEEKSSVRILTLNRPKQLNALSFHMISRLLQLFLAFEEDPSVKLVILKGHGRAFCAGGDVAAVVRDIEQGN   83 (381)
T ss_pred             ccccCCceEEEEECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCeeEEEEECCCCCcccCcCHHHHHhhhcccc
Confidence            35667789999999999999999999999999999999999999999999999999999999999999999864221 11


Q ss_pred             -hhHHHHHHHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcchH
Q 016290           86 -DSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGH  164 (392)
Q Consensus        86 -~~~~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G~  164 (392)
                       .....+|+.+|.+++.|.++|||+||+|||+|||||++|+++|||||||++++|+|||++||++|++|++++|+|++|.
T Consensus        84 ~~~~~~~f~~~~~l~~~i~~~pKPvIa~v~G~a~GGG~~Lal~~D~rvate~a~f~mPE~~iGl~Pd~G~s~~L~rl~G~  163 (381)
T PLN02988         84 WRLGANFFSDEYMLNYVMATYSKAQVSILNGIVMGGGAGVSVHGRFRIATENTVFAMPETALGLFPDVGASYFLSRLPGF  163 (381)
T ss_pred             hhHHHHHHHHHHHHHHHHHHCCCCEEEEecCeEeehhhHHhhcCCeEEEcCCcEEeChhhhcCcCCCccHHHHHHHHHHH
Confidence             1124678888889999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             HHHHHhhcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHhC
Q 016290          165 LGEFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFS  244 (392)
Q Consensus       165 ~a~~L~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~  244 (392)
                      .+.||+|||++++|.||+++||||++||++++.+++.+|+++...++..+..+++.+..++...+..+...+.+|++||+
T Consensus       164 ~~~~l~LTG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~la~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~f~  243 (381)
T PLN02988        164 FGEYVGLTGARLDGAEMLACGLATHFVPSTRLTALEADLCRIGSNDPTFASTILDAYTQHPRLKPQSAYHRLDVIDRCFS  243 (381)
T ss_pred             HHHHHHHcCCCCCHHHHHHcCCceEecCHhHHHHHHHHHHHhhccCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhC
Confidence            89999999999999999999999999999999999999987767777888888998876543334455667999999999


Q ss_pred             cCCHHHHHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHH---cCCccHHH
Q 016290          245 KETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILR---AIISADIY  321 (392)
Q Consensus       245 ~~~~eei~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~---~~~~~d~~  321 (392)
                      .+|+++|+++|+.+..+++++|++++++.|.++||+|+++|+++++++...++.+||++|+++..+++.   +   +||.
T Consensus       244 ~~~~~~i~~~L~~~~~~~~~~wa~~~~~~l~~~sP~sl~vt~~~~~~~~~~sl~e~~~~e~~~~~~~~~~~~~---~DF~  320 (381)
T PLN02988        244 RRTVEEIISALEREATQEADGWISATIQALKKASPASLKISLRSIREGRLQGVGQCLIREYRMVCHVMKGEIS---KDFV  320 (381)
T ss_pred             CCCHHHHHHHHHhhccccccHHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCC---chHH
Confidence            999999999999853333578999999999999999999999999999999999999999999999998   6   9999


Q ss_pred             HHHHHHHhccCCCCCCCCCCCCCCCHHHHhcccCCCCCCc---cCccCcc--cCcccc
Q 016290          322 EGIRALTIEKDNAPKWDPPTLDKVDDDKVDLVFQPFGEDL---ELQIPEN--ENCRWD  374 (392)
Q Consensus       322 eGv~a~l~dK~r~P~w~~~~l~~v~~~~v~~~f~p~~~~~---~l~~~~~--~~~~~~  374 (392)
                      |||||.|||||++|+|+|+++++|++++|++||+|++.++   +|+||++  .++.|.
T Consensus       321 EGVRA~LiDKd~~P~W~p~~l~~v~~~~v~~~f~~~~~~~~~~~l~~~~~~~~~~~~~  378 (381)
T PLN02988        321 EGCRAILVDKDKNPKWEPRRLEDMKDSMVEQYFERVEEEEEWDDLKLPPRNNLPALAI  378 (381)
T ss_pred             HhHHHHhcCCCCCCCCCCCChhhCCHHHHHHHhCCCCccccccccCCcccccccchhh
Confidence            9999999999999999999999999999999999997654   5999873  344443

>PLN02157 3-hydroxyisobutyryl-CoA hydrolase-like protein

Probab=100.00  E-value=2.2e-79  Score=608.66  Aligned_cols=358  Identities=42%  Similarity=0.728  Sum_probs=319.9

Q ss_pred             CCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCC-C-chhH
Q 016290           11 EQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRN-S-KDSC   88 (392)
Q Consensus        11 ~~~V~~~~~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~-~-~~~~   88 (392)
                      ...|+++++++|++||||||+++|+||.+|+.+|.++|+.|+.|++|++|||+|+|++||||+||++++.... + ....
T Consensus        36 ~~~V~~e~~g~v~~ItLNRP~~lNALs~~m~~~L~~al~~~~~D~~vrvVVl~G~GkaFcAGgDl~~l~~~~~~~~~~~~  115 (401)
T PLN02157         36 DYQVLVEGSGCSRTAILNRPPALNALTTHMGYRLQKLYKNWEEDPNIGFVMMKGSGRAFCAGGDIVSLYHLRKRGSPDAI  115 (401)
T ss_pred             CCceEEEEECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHhhCCCCeEEEEECCCCCccCCcCHHHHHhhccccchHHH
Confidence            5679999999999999999999999999999999999999999999999999999999999999999865221 1 1223


Q ss_pred             HHHHHHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcchHHHHH
Q 016290           89 LEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHLGEF  168 (392)
Q Consensus        89 ~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G~~a~~  168 (392)
                      ..+|..+|++++.|.++|||+||+|||+|||||++|+++||+||||++++|+|||++||++|++|++++|+|++|..|+|
T Consensus       116 ~~~~~~~~~l~~~i~~~pkPvIA~v~G~a~GGG~~Lal~cD~rvate~a~fa~PE~~iGl~Pd~G~s~~L~rl~G~~a~~  195 (401)
T PLN02157        116 REFFSSLYSFIYLLGTYLKPHVAILNGVTMGGGTGVSIPGTFRVATDRTIFATPETIIGFHPDAGASFNLSHLPGRLGEY  195 (401)
T ss_pred             HHHHHHHHHHHHHHHhCCCCEEEEEeCeEeehhHHHHHhCCEEEEeCCCEEEChhhhcCCCCCccHHHHHHHhhhHHHHH
Confidence            56778888899999999999999999999999999999999999999999999999999999999999999999988999


Q ss_pred             HhhcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHhCcCCH
Q 016290          169 LALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKETV  248 (392)
Q Consensus       169 L~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~  248 (392)
                      |+|||++++|+||+++||||++||+++++.+.+.+.++...++..+..+++.+.......+..+....+.|+.||+.+++
T Consensus       196 L~LTG~~i~A~eA~~~GLv~~vVp~~~l~~~~~~~~~i~~~~p~av~~~k~~~~~~~~~~~~~l~~~~~~i~~~f~~~d~  275 (401)
T PLN02157        196 LGLTGLKLSGAEMLACGLATHYIRSEEIPVMEEQLKKLLTDDPSVVESCLEKCAEVAHPEKTGVIRRIDLLEKCFSHDTV  275 (401)
T ss_pred             HHHcCCcCCHHHHHHcCCceEEeCHhHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCcchhHHHHHHHHHHHhcCCCH
Confidence            99999999999999999999999999998777666666666777788777777654222334555668999999999999


Q ss_pred             HHHHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHH---cCCccHHHHHHH
Q 016290          249 AEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILR---AIISADIYEGIR  325 (392)
Q Consensus       249 eei~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~---~~~~~d~~eGv~  325 (392)
                      +||+++|+.+.+....+|++++++.|.++||+|+++|+++++++...++++||++|+++..+++.   +   +||.||||
T Consensus       276 ~ei~~al~~~~~kr~~~wa~~~~~~l~~~sP~Sl~vt~~~~~~~~~~~l~e~~~~e~~~~~~~~~~~~~---~DF~EGVR  352 (401)
T PLN02157        276 EEIIDSLEIEAGRRKDTWCITTLRRLKESSPLSLKVALRSIREGRLQTLDQCLIREYRMSLQGLIGPMS---GNFCEGVR  352 (401)
T ss_pred             HHHHHHHHhhhcccchHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCC---chHHHHHH
Confidence            99999998643334578999999999999999999999999999999999999999999999996   5   89999999


Q ss_pred             HHHhccCCCCCCCCCCCCCCCHHHHhcccCCCCC-CccCccCcccCc
Q 016290          326 ALTIEKDNAPKWDPPTLDKVDDDKVDLVFQPFGE-DLELQIPENENC  371 (392)
Q Consensus       326 a~l~dK~r~P~w~~~~l~~v~~~~v~~~f~p~~~-~~~l~~~~~~~~  371 (392)
                      |.|||||++|+|+|+++++|++++|++||.|+++ +++|+||..+++
T Consensus       353 A~LiDKd~~P~W~p~~l~~V~~~~v~~~f~~~~~~~~~l~~~~~~~~  399 (401)
T PLN02157        353 ARLIDKDEAPKWDPPSLEKVSEDMVDDYFCALTPTEPDLDLPVKLRE  399 (401)
T ss_pred             HHHcCCCCCCCCCCCChhhCCHHHHHHHhCCCCCCccccccchhhhh
Confidence            9999999999999999999999999999999963 246888865543

>PLN02874 3-hydroxyisobutyryl-CoA hydrolase-like protein

Probab=100.00  E-value=2.1e-76  Score=587.54  Aligned_cols=374  Identities=78%  Similarity=1.251  Sum_probs=337.0

Q ss_pred             CCCCCCCCCCCCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhcc
Q 016290            1 MAQGVVKNPDEQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYD   80 (392)
Q Consensus         1 m~~~~~~~~~~~~V~~~~~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~   80 (392)
                      |+|.+ ..+.++.|.++++++|++||||||+++|+||.+|+.+|.++|+.++.|++|++|||+|+|++||+|+|++++..
T Consensus         1 ~~~~~-~~~~~~~v~~~~~~~v~~ItLnrP~~~Nal~~~m~~eL~~al~~~~~d~~vrvvVl~g~g~~FcaG~Dl~~~~~   79 (379)
T PLN02874          1 MAQQV-QNPAEEVVLGEEKGRVRVITLNRPRQLNVISLSVVSLLAEFLEQWEKDDSVELIIIKGAGRAFSAGGDLKMFYD   79 (379)
T ss_pred             CCCCC-CCCCCCceEEEEECCEEEEEECCCccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCCccCccCHHHHHh
Confidence            66663 45667789999999999999999999999999999999999999999999999999999999999999999864


Q ss_pred             CCCCchhHHHHHHHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhh
Q 016290           81 GRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSR  160 (392)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~r  160 (392)
                      ..........++...+.+...|.+++||+||+|||+|+|||++|+++||+|||+++++|+|||+++|++|++|++++|+|
T Consensus        80 ~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~iGl~p~~g~~~~L~r  159 (379)
T PLN02874         80 GRESDDSCLEVVYRMYWLCYHIHTYKKTQVALVHGLVMGGGAGLMVPMKFRVVTEKTVFATPEASVGFHTDCGFSYILSR  159 (379)
T ss_pred             hcccchHHHHHHHHHHHHHHHHHhCCCCEEEEecCeEEecHHHHHHhCCeEEEeCCeEEeccccccCcCCChhHHHHHHh
Confidence            22112222445556667788999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cchHHHHHHhhcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHH
Q 016290          161 LPGHLGEFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIID  240 (392)
Q Consensus       161 l~G~~a~~L~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~  240 (392)
                      ++|..+++|+|||++++|+||+++|||+++||++++.++..++.++...+...++++|++|..........+....++|+
T Consensus       160 l~g~~a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~  239 (379)
T PLN02874        160 LPGHLGEYLALTGARLNGKEMVACGLATHFVPSEKLPELEKRLLNLNSGDESAVQEAIEEFSKDVQADEDSILNKQSWIN  239 (379)
T ss_pred             hhHHHHHHHHHcCCcccHHHHHHcCCccEEeCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhhcccCCCcchhHHHHHHHH
Confidence            99988999999999999999999999999999999988778888887778889999999998754444556667799999


Q ss_pred             HHhCcCCHHHHHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHH---cCCc
Q 016290          241 ECFSKETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILR---AIIS  317 (392)
Q Consensus       241 ~~f~~~~~eei~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~---~~~~  317 (392)
                      +||+.+++.+|+++|+++..++.++||.+++++|+++||.|++++|++++++...+++++++.|++...+++.   +   
T Consensus       240 ~~f~~~~~~eii~al~~~~~~~~~~~A~~~a~~l~~~sP~al~~tk~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~~---  316 (379)
T PLN02874        240 ECFSKDTVEEIIKAFESEASKTGNEWIKETLKGLRRSSPTGLKITLRSIREGRKQSLAECLKKEFRLTMNILRSTVS---  316 (379)
T ss_pred             HHhCCCCHHHHHHHHhhcccccccHHHHHHHHHHHhcChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCcC---
Confidence            9999999999999999865555679999999999999999999999999999889999999999999999888   7   


Q ss_pred             cHHHHHHHHHHhccCCCCCCCCCCCCCCCHHHHhcccCCCCCCccCccCcccCccccCccc
Q 016290          318 ADIYEGIRALTIEKDNAPKWDPPTLDKVDDDKVDLVFQPFGEDLELQIPENENCRWDGKYE  378 (392)
Q Consensus       318 ~d~~eGv~a~l~dK~r~P~w~~~~l~~v~~~~v~~~f~p~~~~~~l~~~~~~~~~~~~~~~  378 (392)
                      +||+|||+||++||+|+|+|+++++++|++++|++||.|+..+.+|+||.+..++|..+|.
T Consensus       317 ~D~~EGv~AflidK~r~P~w~~~~~~~v~~~~v~~~f~~~~~~~~~~~~~~~~~~~~~~~~  377 (379)
T PLN02874        317 DDVYEGIRALVIDKDNAPKWNPSTLDEVTDEKVDLVFQPFKAREELQLPEEEENRWSGKYE  377 (379)
T ss_pred             cchhhccceEEEcCCCCCCCCCCChhhCCHHHHHHHhCCCCCccccCCCccccchhhhhhc
Confidence            9999999999889989999999999999999999999999776679999887888877775

>PRK05617 3-hydroxyisobutyryl-CoA hydrolase; Provisional

Probab=100.00  E-value=2.4e-68  Score=523.80  Aligned_cols=336  Identities=39%  Similarity=0.702  Sum_probs=305.2

Q ss_pred             CcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCC-CccccCCCchhhccCCC-Cchh-H
Q 016290           12 QVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVG-RAFSAGGDLKMFYDGRN-SKDS-C   88 (392)
Q Consensus        12 ~~V~~~~~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G-~~FcaG~Dl~~l~~~~~-~~~~-~   88 (392)
                      +.|.++++++|++||||||+++|+||.+|+.+|.++++.++.|++|++|||||.| ++||+|+|++++..... .... .
T Consensus         3 ~~v~~~~~~~v~~itLnrP~~~Nal~~~m~~~L~~~l~~~~~d~~vrvvVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~   82 (342)
T PRK05617          3 DEVLAEVEGGVGVITLNRPKALNALSLEMIRAIDAALDAWEDDDAVAAVVIEGAGERGFCAGGDIRALYEAARAGDPLAA   82 (342)
T ss_pred             ceEEEEEECCEEEEEECCCccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEEcCCCCceeCCcCHHHHHhhhccCCchhH
Confidence            3689999999999999999999999999999999999999999999999999999 99999999999764211 1111 1


Q ss_pred             HHHHHHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcchHHHHH
Q 016290           89 LEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHLGEF  168 (392)
Q Consensus        89 ~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G~~a~~  168 (392)
                      ..+++..++++..|..+|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..+++
T Consensus        83 ~~~~~~~~~~~~~i~~~~kPvIAaVnG~a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~P~~g~~~~L~r~~g~~a~~  162 (342)
T PRK05617         83 DRFFREEYRLNALIARYPKPYIALMDGIVMGGGVGISAHGSHRIVTERTKMAMPETGIGFFPDVGGTYFLSRAPGALGTY  162 (342)
T ss_pred             HHHHHHHHHHHHHHHhCCCCEEEEEcCEEEccHhHHhhhCCEEEEcCCCEeeCCccccCcCCCccceeEehhcccHHHHH
Confidence            24566666788899999999999999999999999999999999999999999999999999999999999998889999


Q ss_pred             HhhcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccC-CCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHhCcCC
Q 016290          169 LALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNT-GDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKET  247 (392)
Q Consensus       169 L~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~~~  247 (392)
                      |+|||++++|+||+++|||+++||++++....+++.+... ...+.+..++.+|....  +...+....+.|++||+..+
T Consensus       163 llltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~  240 (342)
T PRK05617        163 LALTGARISAADALYAGLADHFVPSADLPALLDALISLRWDSGADVVDAALAAFATPA--PASELAAQRAWIDECFAGDT  240 (342)
T ss_pred             HHHcCCCCCHHHHHHcCCcceecCHHHHHHHHHHHHhcCCccchhHHHHHHHHhccCC--CcchhHHHHHHHHHHhCCCC
Confidence            9999999999999999999999999999887777776654 34567888999988763  44578899999999999999


Q ss_pred             HHHHHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHcCCccHHHHHHHHH
Q 016290          248 VAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGIRAL  327 (392)
Q Consensus       248 ~eei~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eGv~a~  327 (392)
                      +++||++|++    +.++||.+++++|+++||.|++.+|++++++...++++++..|...+..++.+   +|++||+++|
T Consensus       241 ~~~~~~~l~~----~~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~~~l~~~~~~e~~~~~~~~~~---~d~~egv~af  313 (342)
T PRK05617        241 VEDIIAALEA----DGGEFAAKTADTLRSRSPTSLKVTLEQLRRARGLTLEECLRRELRLALAMLRS---PDFVEGVRAV  313 (342)
T ss_pred             HHHHHHHHHh----ccHHHHHHHHHHHHhCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhC---CchhhccceE
Confidence            9999999999    45689999999999999999999999999998889999999999999999999   9999999999


Q ss_pred             HhccCCCCCCCCCCCCCCCHHHHhcccCC
Q 016290          328 TIEKDNAPKWDPPTLDKVDDDKVDLVFQP  356 (392)
Q Consensus       328 l~dK~r~P~w~~~~l~~v~~~~v~~~f~p  356 (392)
                      +++|+|.|+|+++++++|++++|++||+|
T Consensus       314 l~ek~r~p~~~~~~~~~~~~~~~~~~~~~  342 (342)
T PRK05617        314 LIDKDRNPKWSPATLEDVTPEDVEAFFAP  342 (342)
T ss_pred             EEcCCCCCCCCCCChHhCCHHHHHHhhCC
Confidence            86776899999999999999999999998

>PRK05862 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.7e-55  Score=417.83  Aligned_cols=253  Identities=26%  Similarity=0.360  Sum_probs=229.4

Q ss_pred             CCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhHHH
Q 016290           11 EQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLE   90 (392)
Q Consensus        11 ~~~V~~~~~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~~   90 (392)
                      ++.|.++++++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||+|.|++||+|+|++++..... .   ..
T Consensus         3 ~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~-~---~~   78 (257)
T PRK05862          3 YETILVETRGRVGLITLNRPKALNALNDALMDELGAALAAFDADEGIGAIVITGSEKAFAAGADIKEMADLSF-M---DV   78 (257)
T ss_pred             CceEEEEeeCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCeeEEEEECCCCceECCcChHhHhccch-h---HH
Confidence            4568999999999999999999999999999999999999999999999999999999999999998754211 1   12


Q ss_pred             HHHHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcch-HHHHHH
Q 016290           91 VVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HLGEFL  169 (392)
Q Consensus        91 ~~~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G-~~a~~L  169 (392)
                      +......++..|.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++| ..+.+|
T Consensus        79 ~~~~~~~~~~~l~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l  158 (257)
T PRK05862         79 YKGDYITNWEKVARIRKPVIAAVAGYALGGGCELAMMCDIIIAADTAKFGQPEIKLGVLPGMGGSQRLTRAVGKAKAMDL  158 (257)
T ss_pred             HHHHHHHHHHHHHhCCCCEEEEEccEEeHHHHHHHHHCCEEEEeCCCEEeCchhccCcCCCccHHHHHHHHhCHHHHHHH
Confidence            2233345677899999999999999999999999999999999999999999999999999999999999999 899999


Q ss_pred             hhcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHhCcCCHH
Q 016290          170 ALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKETVA  249 (392)
Q Consensus       170 ~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~e  249 (392)
                      ++||++++|+||+++||||++||++++.+.+.+                                               
T Consensus       159 ~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~-----------------------------------------------  191 (257)
T PRK05862        159 CLTGRMMDAAEAERAGLVSRVVPADKLLDEALA-----------------------------------------------  191 (257)
T ss_pred             HHhCCccCHHHHHHcCCCCEeeCHhHHHHHHHH-----------------------------------------------
Confidence            999999999999999999999998877654333                                               


Q ss_pred             HHHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHh
Q 016290          250 EIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGIRALTI  329 (392)
Q Consensus       250 ei~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eGv~a~l~  329 (392)
                                          .+++|++.+|.+++.+|++++.....++.+++..|.+.+..++.+   +|++||+++|+ 
T Consensus       192 --------------------~a~~l~~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s---~~~~e~i~af~-  247 (257)
T PRK05862        192 --------------------AATTIASFSLPAVMMAKEAVNRAYETTLAEGLLFERRLFHSLFAT---EDQKEGMAAFV-  247 (257)
T ss_pred             --------------------HHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcC---hhHHHHHHHHh-
Confidence                                378899999999999999999988889999999999999999999   99999999999 


Q ss_pred             ccCCCCCCCC
Q 016290          330 EKDNAPKWDP  339 (392)
Q Consensus       330 dK~r~P~w~~  339 (392)
                      +| |+|.|++
T Consensus       248 ~k-r~p~~~~  256 (257)
T PRK05862        248 EK-RKPVFKH  256 (257)
T ss_pred             cc-CCCCCCC
Confidence            66 8999975

>PRK06142 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.7e-55  Score=421.13  Aligned_cols=260  Identities=23%  Similarity=0.297  Sum_probs=231.8

Q ss_pred             CCCCCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCC----C
Q 016290            8 NPDEQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGR----N   83 (392)
Q Consensus         8 ~~~~~~V~~~~~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~----~   83 (392)
                      ++.++.|.++++++|++||||||+++|+||.+|+.+|.+++++++.|++|++|||||.|++||+|+|++++....    .
T Consensus         2 ~~~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~   81 (272)
T PRK06142          2 MTTYESFTVELADHVAQVTLNRPGKGNAMNPAFWSELPEIFRWLDADPEVRAVVLSGSGKHFSYGIDLPAMAGVFGQLGK   81 (272)
T ss_pred             CCCcceEEEEecCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCceecccCHHHHhhhcccccc
Confidence            445677999999999999999999999999999999999999999999999999999999999999999875311    0


Q ss_pred             -----CchhHHHHHHHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHH
Q 016290           84 -----SKDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIH  158 (392)
Q Consensus        84 -----~~~~~~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L  158 (392)
                           ....+..+.....+++..|..+|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~kpvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l  161 (272)
T PRK06142         82 DGLARPRTDLRREILRLQAAINAVADCRKPVIAAVQGWCIGGGVDLISACDMRYASADAKFSVREVDLGMVADVGSLQRL  161 (272)
T ss_pred             cccccchHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccchHHHHHhCCEEEecCCCeecchhhhhCCCCCchHHHHH
Confidence                 011122334445677888999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcch-HHHHHHhhcCCcccHHHHHHcCccceecCC-CChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHH
Q 016290          159 SRLPG-HLGEFLALTGARLNGKELVAAGLATHFVPS-EKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQ  236 (392)
Q Consensus       159 ~rl~G-~~a~~L~ltG~~l~a~eA~~~GLv~~vv~~-~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  236 (392)
                      +|++| ..+++|++||++++|+||+++||||++||+ +++.+.+.+                                  
T Consensus       162 ~~~~G~~~a~~l~l~g~~~~a~eA~~~GLv~~vv~~~~~l~~~a~~----------------------------------  207 (272)
T PRK06142        162 PRIIGDGHLRELALTGRDIDAAEAEKIGLVNRVYDDADALLAAAHA----------------------------------  207 (272)
T ss_pred             HHHhCHHHHHHHHHhCCCcCHHHHHHcCCccEecCCHHHHHHHHHH----------------------------------
Confidence            99999 999999999999999999999999999996 666543333                                  


Q ss_pred             HHHHHHhCcCCHHHHHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHcCC
Q 016290          237 SIIDECFSKETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAII  316 (392)
Q Consensus       237 ~~i~~~f~~~~~eei~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~  316 (392)
                                                       ++++|++.||.+++.+|+++++....++.+++..|......++.+  
T Consensus       208 ---------------------------------~a~~ia~~~~~a~~~~K~~l~~~~~~~l~~~~~~~~~~~~~~~~~--  252 (272)
T PRK06142        208 ---------------------------------TAREIAAKSPLAVRGTKEVLDYMRDHRVADGLRYVATWNAAMLPS--  252 (272)
T ss_pred             ---------------------------------HHHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcC--
Confidence                                             378899999999999999999888889999999999999999999  


Q ss_pred             ccHHHHHHHHHHhccCCCCCCCC
Q 016290          317 SADIYEGIRALTIEKDNAPKWDP  339 (392)
Q Consensus       317 ~~d~~eGv~a~l~dK~r~P~w~~  339 (392)
                       +|++|||++|+ +| |+|+|++
T Consensus       253 -~d~~egv~af~-~k-r~p~~~~  272 (272)
T PRK06142        253 -KDLTEAIAAHM-EK-RPPEFTG  272 (272)
T ss_pred             -ccHHHHHHHHh-cC-CCCCCCC
Confidence             99999999999 55 8999963

>PRK05809 3-hydroxybutyryl-CoA dehydratase; Validated

Probab=100.00  E-value=2.8e-55  Score=417.05  Aligned_cols=257  Identities=25%  Similarity=0.392  Sum_probs=232.8

Q ss_pred             CCCCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCC-CccccCCCchhhccCCCCchh
Q 016290            9 PDEQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVG-RAFSAGGDLKMFYDGRNSKDS   87 (392)
Q Consensus         9 ~~~~~V~~~~~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G-~~FcaG~Dl~~l~~~~~~~~~   87 (392)
                      |++..|.++++++|++||||||+++|+||.+|+.+|.++++.++.|+++++|||+|+| ++||+|+|++++.....  ..
T Consensus         1 ~~~~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~~F~aG~Dl~~~~~~~~--~~   78 (260)
T PRK05809          1 MELKNVILEKEGHIAVVTINRPKALNALNSETLKELDTVLDDIENDDNVYAVILTGAGEKAFVAGADISEMKDLNE--EE   78 (260)
T ss_pred             CCcceEEEEEeCCEEEEEECCCcccCCCCHHHHHHHHHHHHHHhcCCCcEEEEEEcCCCCceeeCcChHhHhccCh--HH
Confidence            3466789999999999999999999999999999999999999999999999999999 99999999999864221  11


Q ss_pred             HHHHHHHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcch-HHH
Q 016290           88 CLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HLG  166 (392)
Q Consensus        88 ~~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G-~~a  166 (392)
                      ...+......++..|.++|||+||+|||+|+|||++|+++|||||++++++|++||+++|++|++|++++|+|++| ..+
T Consensus        79 ~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~va~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a  158 (260)
T PRK05809         79 GRKFGLLGNKVFRKLENLDKPVIAAINGFALGGGCELSMACDIRIASEKAKFGQPEVGLGITPGFGGTQRLARIVGPGKA  158 (260)
T ss_pred             HHHHHHHHHHHHHHHHcCCCCEEEEEcCeeecHHHHHHHhCCEEEeeCCCEEeCcccccCCCCCccHHHHHHHHhCHHHH
Confidence            1334444456788899999999999999999999999999999999999999999999999999999999999999 899


Q ss_pred             HHHhhcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHhCcC
Q 016290          167 EFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKE  246 (392)
Q Consensus       167 ~~L~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~~  246 (392)
                      ++|++||++++|+||+++||||++||++++.+.+.                                             
T Consensus       159 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~---------------------------------------------  193 (260)
T PRK05809        159 KELIYTGDMINAEEALRIGLVNKVVEPEKLMEEAK---------------------------------------------  193 (260)
T ss_pred             HHHHHhCCCCCHHHHHHcCCCCcccChHHHHHHHH---------------------------------------------
Confidence            99999999999999999999999999877664333                                             


Q ss_pred             CHHHHHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHcCCccHHHHHHHH
Q 016290          247 TVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGIRA  326 (392)
Q Consensus       247 ~~eei~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eGv~a  326 (392)
                                            +.+++|++.||.+++.+|++++.....++.++++.|.+.+..++.+   +|++||+++
T Consensus       194 ----------------------~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~---~~~~egi~a  248 (260)
T PRK05809        194 ----------------------ALANKIAANAPIAVKLCKDAINRGMQVDIDTAVAIEAEDFGECFST---EDQTEGMTA  248 (260)
T ss_pred             ----------------------HHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcC---HHHHHHHHH
Confidence                                  3478999999999999999999988889999999999999999999   999999999


Q ss_pred             HHhccCCCCCCCC
Q 016290          327 LTIEKDNAPKWDP  339 (392)
Q Consensus       327 ~l~dK~r~P~w~~  339 (392)
                      |+ +| |+|+|.+
T Consensus       249 f~-~~-r~p~~~~  259 (260)
T PRK05809        249 FV-EK-REKNFKN  259 (260)
T ss_pred             Hh-cC-CCCCCCC
Confidence            98 66 8999975

>PRK05980 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=3.7e-55  Score=416.16  Aligned_cols=254  Identities=28%  Similarity=0.451  Sum_probs=230.6

Q ss_pred             CcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCC-CccccCCCchhhccCCC--CchhH
Q 016290           12 QVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVG-RAFSAGGDLKMFYDGRN--SKDSC   88 (392)
Q Consensus        12 ~~V~~~~~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G-~~FcaG~Dl~~l~~~~~--~~~~~   88 (392)
                      +.|.++.+++|++||||||+++|+||.+|+.+|.++++.++.|++|++|||||.| ++||+|+|++++.....  .....
T Consensus         3 ~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~   82 (260)
T PRK05980          3 DTVLIEIRDGIALLTLNRPEKLNALNYALIDRLLARLDAIEVDESVRAVILTGAGDRAFSAGADIHEFSASVAAGADVAL   82 (260)
T ss_pred             ceEEEEEECCEEEEEECCcccccCCCHHHHHHHHHHHHHHhhCCCcEEEEEEeCCCCceEcCcCHHHHhhhccccchhhH
Confidence            3589999999999999999999999999999999999999999999999999999 89999999998754211  11122


Q ss_pred             HHHHHHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcch-HHHH
Q 016290           89 LEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HLGE  167 (392)
Q Consensus        89 ~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G-~~a~  167 (392)
                      ..++....+++..|.++|||+||+|||+|+|||++|+++|||||++++++|++||+++|++|++|++++|+|++| ..++
T Consensus        83 ~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~  162 (260)
T PRK05980         83 RDFVRRGQAMTARLEAFPKPVIAAVNGLAFGGGCEITEAVHLAIASERALFAKPEIRLGMPPTFGGTQRLPRLAGRKRAL  162 (260)
T ss_pred             HHHHHHHHHHHHHHHhCCCCEEEEEcCEEEhhhhHHhHhCCEEEecCCCEecCcccccCCCCCchHhhHHHhhcCHHHHH
Confidence            455655667888999999999999999999999999999999999999999999999999999999999999999 8999


Q ss_pred             HHhhcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHhCcCC
Q 016290          168 FLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKET  247 (392)
Q Consensus       168 ~L~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~~~  247 (392)
                      +|++||++++|+||+++||||++||++++.+.+.                                              
T Consensus       163 ~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~----------------------------------------------  196 (260)
T PRK05980        163 ELLLTGDAFSAERALEIGLVNAVVPHEELLPAAR----------------------------------------------  196 (260)
T ss_pred             HHHHcCCccCHHHHHHcCCCCcccCHHHHHHHHH----------------------------------------------
Confidence            9999999999999999999999999887765333                                              


Q ss_pred             HHHHHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHcCCccHHHHHHHHH
Q 016290          248 VAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGIRAL  327 (392)
Q Consensus       248 ~eei~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eGv~a~  327 (392)
                                           +.+++|++.+|.+++.+|++++.....++.+++..|...+..++.+   +|++||+++|
T Consensus       197 ---------------------~~a~~la~~~p~a~~~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~~---~~~~e~~~af  252 (260)
T PRK05980        197 ---------------------ALARRIIRHSPVAVAAILTAVTRGLNLSIAEGLLIESEQFARMAGS---ADLREGLAAW  252 (260)
T ss_pred             ---------------------HHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcC---hhHHHHHHHH
Confidence                                 3378899999999999999999988889999999999999999999   9999999999


Q ss_pred             HhccCCCCCC
Q 016290          328 TIEKDNAPKW  337 (392)
Q Consensus       328 l~dK~r~P~w  337 (392)
                      + +| |+|+|
T Consensus       253 ~-~k-r~p~~  260 (260)
T PRK05980        253 I-ER-RRPAY  260 (260)
T ss_pred             h-cc-CCCCC
Confidence            9 66 88988

>PRK09076 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=4.8e-55  Score=414.87  Aligned_cols=252  Identities=24%  Similarity=0.386  Sum_probs=228.6

Q ss_pred             cEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCC-CccccCCCchhhccCCCCchhHHHH
Q 016290           13 VVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVG-RAFSAGGDLKMFYDGRNSKDSCLEV   91 (392)
Q Consensus        13 ~V~~~~~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G-~~FcaG~Dl~~l~~~~~~~~~~~~~   91 (392)
                      .|.++++++|++||||||++ |+||.+|+.+|.++++.++.|+++++|||+|.| ++||+|+|++++.....  .....+
T Consensus         4 ~v~~~~~~~v~~itlnrp~~-Nal~~~~~~~l~~al~~~~~d~~vrvvVl~g~g~~~F~aG~Dl~~~~~~~~--~~~~~~   80 (258)
T PRK09076          4 ELDLEIDGHVAILTLNNPPA-NTWTADSLQALKQLVLELNADKDVYALVITGDGEKFFSAGADLNLFADGDK--AVAREM   80 (258)
T ss_pred             EEEEEEECCEEEEEECCCCc-CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCceEeCcCHHHHhhcCh--hhHHHH
Confidence            58899999999999999986 999999999999999999999999999999999 89999999998754211  111334


Q ss_pred             HHHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcch-HHHHHHh
Q 016290           92 VYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HLGEFLA  170 (392)
Q Consensus        92 ~~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G-~~a~~L~  170 (392)
                      ......++..|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++| ..+++|+
T Consensus        81 ~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~~l~  160 (258)
T PRK09076         81 ARRFGEAFEALSAFRGVSIAAINGYAMGGGLECALACDIRIAEEQAQMALPEASVGLLPCAGGTQNLPWLVGEGWAKRMI  160 (258)
T ss_pred             HHHHHHHHHHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEecCCCEeeCcccccCCCCCccHHHHHHHHhCHHHHHHHH
Confidence            444556788899999999999999999999999999999999999999999999999999999999999999 8999999


Q ss_pred             hcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHhCcCCHHH
Q 016290          171 LTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKETVAE  250 (392)
Q Consensus       171 ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~ee  250 (392)
                      |||++++|+||+++||||++||++++.+.+.                                                 
T Consensus       161 l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~-------------------------------------------------  191 (258)
T PRK09076        161 LCGERVDAATALRIGLVEEVVEKGEAREAAL-------------------------------------------------  191 (258)
T ss_pred             HcCCcCCHHHHHHCCCCceecCchhHHHHHH-------------------------------------------------
Confidence            9999999999999999999999987765333                                                 


Q ss_pred             HHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHhc
Q 016290          251 IIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGIRALTIE  330 (392)
Q Consensus       251 i~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eGv~a~l~d  330 (392)
                                        +++++|++.||.+++.+|++++.....++.+.+..|...+..++.+   +|++||+++|+ +
T Consensus       192 ------------------~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~---~~~~eg~~af~-~  249 (258)
T PRK09076        192 ------------------ALAQKVANQSPSAVAACKTLIQAARNGPRAAALALERELFVDLFDT---EDQREGVNAFL-E  249 (258)
T ss_pred             ------------------HHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcC---chHHHHHHHHh-c
Confidence                              3378999999999999999999888889999999999999999999   99999999999 5


Q ss_pred             cCCCCCCCC
Q 016290          331 KDNAPKWDP  339 (392)
Q Consensus       331 K~r~P~w~~  339 (392)
                      | |+|+|++
T Consensus       250 k-r~p~~~~  257 (258)
T PRK09076        250 K-RAPQWKN  257 (258)
T ss_pred             C-CCCCCCC
Confidence            5 8999975

>PRK09674 enoyl-CoA hydratase-isomerase; Provisional

Probab=100.00  E-value=5.3e-55  Score=413.89  Aligned_cols=252  Identities=25%  Similarity=0.363  Sum_probs=228.5

Q ss_pred             CcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhHHHH
Q 016290           12 QVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEV   91 (392)
Q Consensus        12 ~~V~~~~~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~~~   91 (392)
                      +.|.++++++|++||||||+++|+||.+|+.+|.++++.+++|++||+|||||.|++||+|+|++++..... .   ..+
T Consensus         2 ~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~~~~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~-~---~~~   77 (255)
T PRK09674          2 SELLVSRQQRVLLLTLNRPEARNALNNALLTQLVNELEAAATDTSIGVCVITGNARFFAAGADLNEMAEKDL-A---ATL   77 (255)
T ss_pred             ceEEEEeECCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhhCCCcEEEEEECCCCceecccChHhHhccch-h---hhH
Confidence            468889999999999999999999999999999999999999999999999999999999999998754211 1   122


Q ss_pred             HHHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcch-HHHHHHh
Q 016290           92 VYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HLGEFLA  170 (392)
Q Consensus        92 ~~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G-~~a~~L~  170 (392)
                      ......++..|..+|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++| ..+.+|+
T Consensus        78 ~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~ig~~~a~~l~  157 (255)
T PRK09674         78 NDPRPQLWQRLQAFNKPLIAAVNGYALGAGCELALLCDIVIAGENARFGLPEITLGIMPGAGGTQRLIRSVGKSLASQMV  157 (255)
T ss_pred             HHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEecCCCEEeCchhhcCCCCCccHHHHHHHHhCHHHHHHHH
Confidence            223345677899999999999999999999999999999999999999999999999999999999999999 8999999


Q ss_pred             hcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHhCcCCHHH
Q 016290          171 LTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKETVAE  250 (392)
Q Consensus       171 ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~ee  250 (392)
                      +||++++++||+++||||++||++++.+.+.                                                 
T Consensus       158 l~g~~~~a~eA~~~Glv~~vv~~~~~~~~a~-------------------------------------------------  188 (255)
T PRK09674        158 LTGESITAQQAQQAGLVSEVFPPELTLERAL-------------------------------------------------  188 (255)
T ss_pred             HcCCccCHHHHHHcCCCcEecChHHHHHHHH-------------------------------------------------
Confidence            9999999999999999999999887654333                                                 


Q ss_pred             HHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHhc
Q 016290          251 IIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGIRALTIE  330 (392)
Q Consensus       251 i~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eGv~a~l~d  330 (392)
                                        +.+++|+++||.+++.+|++++.....++.+++..|...+..++.+   +|++||+++|+ +
T Consensus       189 ------------------~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~---~~~~e~i~af~-~  246 (255)
T PRK09674        189 ------------------QLASKIARHSPLALRAAKQALRQSQEVDLQAGLAQERQLFTLLAAT---EDRHEGISAFL-E  246 (255)
T ss_pred             ------------------HHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcC---HHHHHHHHHHh-c
Confidence                              3478999999999999999999988889999999999999999999   99999999999 5


Q ss_pred             cCCCCCCCC
Q 016290          331 KDNAPKWDP  339 (392)
Q Consensus       331 K~r~P~w~~  339 (392)
                      | |+|+|++
T Consensus       247 k-r~p~~~~  254 (255)
T PRK09674        247 K-RTPDFKG  254 (255)
T ss_pred             c-CCCCCCC
Confidence            6 8999975

>PRK06127 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=6.1e-55  Score=416.46  Aligned_cols=258  Identities=21%  Similarity=0.318  Sum_probs=233.7

Q ss_pred             CCCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCC-CccccCCCchhhccCCCCchhH
Q 016290           10 DEQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVG-RAFSAGGDLKMFYDGRNSKDSC   88 (392)
Q Consensus        10 ~~~~V~~~~~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G-~~FcaG~Dl~~l~~~~~~~~~~   88 (392)
                      ..+.|.++++++|++||||||+++|+||.+|+.+|.++++.++.|++|++|||+|.| ++||+|+|++++..........
T Consensus         9 ~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~   88 (269)
T PRK06127          9 PTGKLLAEKTGGLGRITFNNPARHNAMSLDMWEALPQALAAAEDDDAIRVVVLTGAGEKAFVSGADISQFEESRSDAEAV   88 (269)
T ss_pred             CCCceEEEEECCEEEEEecCCCccCCCCHHHHHHHHHHHHHHHhCCCcEEEEEEeCCCCceecCcCHHHHhhcccchHHH
Confidence            345699999999999999999999999999999999999999999999999999999 8999999999875422211222


Q ss_pred             HHHHHHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcch-HHHH
Q 016290           89 LEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HLGE  167 (392)
Q Consensus        89 ~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G-~~a~  167 (392)
                      ..++...+.++..|..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++| .++.
T Consensus        89 ~~~~~~~~~~~~~i~~~~kPvIaav~G~a~GgG~~LalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~  168 (269)
T PRK06127         89 AAYEQAVEAAQAALADYAKPTIACIRGYCIGGGMGIALACDIRIAAEDSRFGIPAARLGLGYGYDGVKNLVDLVGPSAAK  168 (269)
T ss_pred             HHHHHHHHHHHHHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEeeCCCEeeCchhhhCCCCCccHHHHHHHHhCHHHHH
Confidence            345555567888999999999999999999999999999999999999999999999999999999999999999 8999


Q ss_pred             HHhhcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHhCcCC
Q 016290          168 FLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKET  247 (392)
Q Consensus       168 ~L~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~~~  247 (392)
                      +|++||++++++||+++||||++||++++.+.+.++                                            
T Consensus       169 ~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~--------------------------------------------  204 (269)
T PRK06127        169 DLFYTARRFDAAEALRIGLVHRVTAADDLETALADY--------------------------------------------  204 (269)
T ss_pred             HHHHcCCCCCHHHHHHcCCCCEeeCHHHHHHHHHHH--------------------------------------------
Confidence            999999999999999999999999988876544443                                            


Q ss_pred             HHHHHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHcCCccHHHHHHHHH
Q 016290          248 VAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGIRAL  327 (392)
Q Consensus       248 ~eei~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eGv~a~  327 (392)
                                             ++++++.||.+++.+|++++.....++.+.+..|...+..++.+   +|++||+++|
T Consensus       205 -----------------------a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~---~d~~e~~~af  258 (269)
T PRK06127        205 -----------------------AATIAGNAPLTLRAAKRAIAELLKDEPERDMAACQALVAACFDS---EDYREGRAAF  258 (269)
T ss_pred             -----------------------HHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhcC---hHHHHHHHHH
Confidence                                   78899999999999999999988889999999999999999999   9999999999


Q ss_pred             HhccCCCCCCCC
Q 016290          328 TIEKDNAPKWDP  339 (392)
Q Consensus       328 l~dK~r~P~w~~  339 (392)
                      + +| |+|+|++
T Consensus       259 ~-ek-r~p~~~~  268 (269)
T PRK06127        259 M-EK-RKPVFKG  268 (269)
T ss_pred             h-cC-CCCCCCC
Confidence            9 66 8899975

>PRK07799 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=8.1e-55  Score=414.48  Aligned_cols=257  Identities=23%  Similarity=0.306  Sum_probs=226.2

Q ss_pred             CCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhHHH
Q 016290           11 EQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLE   90 (392)
Q Consensus        11 ~~~V~~~~~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~~   90 (392)
                      ++.|.++++++|++||||||+++|+||.+|+.+|.++++.++.|++|++|||||.|++||+|+|++++............
T Consensus         4 ~~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~   83 (263)
T PRK07799          4 GPHALVEQRGHTLIVTMNRPEARNALSTEMLRIMVDAWDRVDNDPDIRSCILTGAGGAFCAGMDLKAATKKPPGDSFKDG   83 (263)
T ss_pred             CceEEEEEECCEEEEEECCCcccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCccccccCHHHHhhccccchhhhh
Confidence            45689999999999999999999999999999999999999999999999999999999999999998643211110011


Q ss_pred             HH-HHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcch-HHHHH
Q 016290           91 VV-YRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HLGEF  168 (392)
Q Consensus        91 ~~-~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G-~~a~~  168 (392)
                      .+ ......+..+..+|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++| .++++
T Consensus        84 ~~~~~~~~~~~~~~~~~kpvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~  163 (263)
T PRK07799         84 SYDPSRIDALLKGRRLTKPLIAAVEGPAIAGGTEILQGTDIRVAGESAKFGISEAKWSLFPMGGSAVRLVRQIPYTVACD  163 (263)
T ss_pred             hhhhhHHHHHHHHhcCCCCEEEEECCeEeccHHHHHHhCCEEEecCCCEecCcccccCcCCCccHHHHHHHHhCHHHHHH
Confidence            11 11112233478999999999999999999999999999999999999999999999999999999999999 99999


Q ss_pred             HhhcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHhCcCCH
Q 016290          169 LALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKETV  248 (392)
Q Consensus       169 L~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~  248 (392)
                      |++||++++|+||+++||||++||++++.+.+.                                               
T Consensus       164 l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~-----------------------------------------------  196 (263)
T PRK07799        164 LLLTGRHITAAEAKEIGLIGHVVPDGQALDKAL-----------------------------------------------  196 (263)
T ss_pred             HHHcCCCCCHHHHHHcCCccEecCcchHHHHHH-----------------------------------------------
Confidence            999999999999999999999999988764332                                               


Q ss_pred             HHHHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHH
Q 016290          249 AEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGIRALT  328 (392)
Q Consensus       249 eei~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eGv~a~l  328 (392)
                                          +++++|++.||.+++.+|++++.....++.+++..|.+.+..++.+   +|++||+++|+
T Consensus       197 --------------------~~a~~~~~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~---~~~~egi~af~  253 (263)
T PRK07799        197 --------------------ELAELINANGPLAVQAILRTIRETEGMHENEAFKIDTKIGIPVFLS---EDAKEGPRAFA  253 (263)
T ss_pred             --------------------HHHHHHHhcChHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcC---ccHHHHHHHHH
Confidence                                3378999999999999999999988889999999999999999999   99999999999


Q ss_pred             hccCCCCCCCC
Q 016290          329 IEKDNAPKWDP  339 (392)
Q Consensus       329 ~dK~r~P~w~~  339 (392)
                       +| |+|+|+.
T Consensus       254 -~~-r~p~~~~  262 (263)
T PRK07799        254 -EK-RAPNFQG  262 (263)
T ss_pred             -cc-CCCCCCC
Confidence             55 8999975

>PRK08139 enoyl-CoA hydratase; Validated

Probab=100.00  E-value=8.7e-55  Score=414.67  Aligned_cols=258  Identities=25%  Similarity=0.367  Sum_probs=232.9

Q ss_pred             CCCCCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchh
Q 016290            8 NPDEQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDS   87 (392)
Q Consensus         8 ~~~~~~V~~~~~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~   87 (392)
                      .+..+.|.++.+++|++||||||+++|+||.+|+.+|.++++.++.|++|++|||+|.|++||+|+|++++..... ...
T Consensus         7 ~~~~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~-~~~   85 (266)
T PRK08139          7 ATEAPLLLREDRDGVATLTLNRPQAFNALSEAMLAALQAALDAIAADPSVRVVVLAAAGKAFCAGHDLKEMRAARG-LAY   85 (266)
T ss_pred             cccCCceEEEeeCCEEEEEeCCcccccCCCHHHHHHHHHHHHHHhcCCCeeEEEEecCCCcceeccCHHHHhcccc-hhH
Confidence            4455679999999999999999999999999999999999999999999999999999999999999998764221 122


Q ss_pred             HHHHHHHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcch-HHH
Q 016290           88 CLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HLG  166 (392)
Q Consensus        88 ~~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G-~~a  166 (392)
                      ...++....+++..|.++|||+||+|||+|+|||++|+++|||||++++++|++||+++|++|++| +++|+|++| .++
T Consensus        86 ~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~~-~~~l~r~vG~~~A  164 (266)
T PRK08139         86 FRALFARCSRVMQAIVALPQPVIARVHGIATAAGCQLVASCDLAVAADTARFAVPGVNIGLFCSTP-MVALSRNVPRKQA  164 (266)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCEEEEECceeeHHHHHHHHhCCEEEEeCCCEEeCcccCcCCCCCcc-HHHHHHHhCHHHH
Confidence            345556667788899999999999999999999999999999999999999999999999999865 578999999 999


Q ss_pred             HHHhhcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHhCcC
Q 016290          167 EFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKE  246 (392)
Q Consensus       167 ~~L~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~~  246 (392)
                      .+|++||++++|+||+++||||++||++++.+.+.++                                           
T Consensus       165 ~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~-------------------------------------------  201 (266)
T PRK08139        165 MEMLLTGEFIDAATAREWGLVNRVVPADALDAAVARL-------------------------------------------  201 (266)
T ss_pred             HHHHHcCCccCHHHHHHcCCccEeeChhHHHHHHHHH-------------------------------------------
Confidence            9999999999999999999999999988877544443                                           


Q ss_pred             CHHHHHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHcCCccHHHHHHHH
Q 016290          247 TVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGIRA  326 (392)
Q Consensus       247 ~~eei~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eGv~a  326 (392)
                                              +++|++.||.+++.+|+++++....++.+++..|...+..++.+   +|++||+++
T Consensus       202 ------------------------a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~---~d~~eg~~a  254 (266)
T PRK08139        202 ------------------------AAVIAAKSPAAVRIGKEAFYRQAEMPLADAYAYAGDVMAENMMA---EDAEEGIDA  254 (266)
T ss_pred             ------------------------HHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhcC---chHHHHHHH
Confidence                                    78999999999999999999988889999999999999999999   999999999


Q ss_pred             HHhccCCCCCCCC
Q 016290          327 LTIEKDNAPKWDP  339 (392)
Q Consensus       327 ~l~dK~r~P~w~~  339 (392)
                      |+ +| |+|+|.+
T Consensus       255 f~-~k-r~p~~~~  265 (266)
T PRK08139        255 FL-EK-RPPEWRG  265 (266)
T ss_pred             Hh-cC-CCCCCCC
Confidence            99 66 8999975

>PRK08150 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=6.9e-55  Score=412.91  Aligned_cols=253  Identities=25%  Similarity=0.310  Sum_probs=228.3

Q ss_pred             CcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhHHHH
Q 016290           12 QVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEV   91 (392)
Q Consensus        12 ~~V~~~~~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~~~   91 (392)
                      +.|.++++++|++||||||+++|+||.+|+.+|.++++.++  +++++|||||.|++||+|+|++++.....  .....+
T Consensus         2 ~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~--~~vr~vvltg~g~~F~aG~Dl~~~~~~~~--~~~~~~   77 (255)
T PRK08150          2 SLVSYELDGGVATIGLNRPAKRNALNDGLIAALRAAFARLP--EGVRAVVLHGEGDHFCAGLDLSELRERDA--GEGMHH   77 (255)
T ss_pred             ceEEEEeeCCEEEEEEcCCccccCCCHHHHHHHHHHHHHhh--cCCeEEEEECCCCceecCcCHHHHhhccc--hhHHHH
Confidence            46889999999999999999999999999999999999987  78999999999999999999999854211  111334


Q ss_pred             HHHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcch-HHHHHHh
Q 016290           92 VYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HLGEFLA  170 (392)
Q Consensus        92 ~~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G-~~a~~L~  170 (392)
                      +...++++..|.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++| ..+++|+
T Consensus        78 ~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~~l~  157 (255)
T PRK08150         78 SRRWHRVFDKIQYGRVPVIAALHGAVVGGGLELASAAHIRVADESTYFALPEGQRGIFVGGGGSVRVPRLIGVARMTDMM  157 (255)
T ss_pred             HHHHHHHHHHHHhCCCCEEEEECCEEEcHHHHHHHhCCEEEEeCCCEEeccccccCCCCCccHHHHHHHHhCHHHHHHHH
Confidence            455567788899999999999999999999999999999999999999999999999999999999999999 8999999


Q ss_pred             hcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHhCcCCHHH
Q 016290          171 LTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKETVAE  250 (392)
Q Consensus       171 ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~ee  250 (392)
                      |||++++|+||+++||||++||++++.+.+.+                                                
T Consensus       158 ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~------------------------------------------------  189 (255)
T PRK08150        158 LTGRVYDAQEGERLGLAQYLVPAGEALDKAME------------------------------------------------  189 (255)
T ss_pred             HcCCcCCHHHHHHcCCccEeeCchHHHHHHHH------------------------------------------------
Confidence            99999999999999999999999887654433                                                


Q ss_pred             HHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHhc
Q 016290          251 IIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGIRALTIE  330 (392)
Q Consensus       251 i~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eGv~a~l~d  330 (392)
                                         ++++|+++||.+++.+|++++.....++++.+..|...+..++.+   +|++||+++|+ +
T Consensus       190 -------------------~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~s---~d~~eg~~af~-~  246 (255)
T PRK08150        190 -------------------LARRIAQNAPLTNFAVLNALPRIADMSADDGLFVESLMAAVAQSA---PEAKERLRAFL-E  246 (255)
T ss_pred             -------------------HHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhcC---HHHHHHHHHHh-c
Confidence                               378999999999999999999988889999999999988888888   99999999999 6


Q ss_pred             cCCCCCCCCC
Q 016290          331 KDNAPKWDPP  340 (392)
Q Consensus       331 K~r~P~w~~~  340 (392)
                      | |+|+|+++
T Consensus       247 k-r~p~~~~~  255 (255)
T PRK08150        247 K-KAAKVKPP  255 (255)
T ss_pred             c-CCCCCCCC
Confidence            6 89999863

>PRK07658 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=9.2e-55  Score=412.81  Aligned_cols=253  Identities=27%  Similarity=0.402  Sum_probs=229.6

Q ss_pred             cEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhHHHHH
Q 016290           13 VVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVV   92 (392)
Q Consensus        13 ~V~~~~~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~~~~   92 (392)
                      .|.++++++|++||||||++ |+||.+|+.+|.++++.++.|++|++|||+|.|++||+|+|++++..... ......+.
T Consensus         3 ~i~~~~~~~v~~itl~rp~~-Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~-~~~~~~~~   80 (257)
T PRK07658          3 FLSVRVEDHVAVITLNHPPA-NALSSQVLHELSELLDQVEKDDNVRVVVIHGEGRFFSAGADIKEFTSVTE-AEQATELA   80 (257)
T ss_pred             eEEEEeeCCEEEEEECCCCC-CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceEeCcCHHHHhccCc-hhhHHHHH
Confidence            67889999999999999986 99999999999999999999999999999999999999999998854221 11223444


Q ss_pred             HHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcch-HHHHHHhh
Q 016290           93 YRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HLGEFLAL  171 (392)
Q Consensus        93 ~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G-~~a~~L~l  171 (392)
                      .....++..|.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++| ..+++|++
T Consensus        81 ~~~~~~~~~l~~~~kpvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~l  160 (257)
T PRK07658         81 QLGQVTFERVEKFSKPVIAAIHGAALGGGLELAMSCHIRFATESAKLGLPELNLGLIPGFAGTQRLPRYVGKAKALEMML  160 (257)
T ss_pred             HHHHHHHHHHHhCCCCEEEEEcCeeeeHHHHHHHhCCEEEecCCCcccCcccccCCCCCCcHHHHHHHHhCHHHHHHHHH
Confidence            55567888999999999999999999999999999999999999999999999999999999999999999 89999999


Q ss_pred             cCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHhCcCCHHHH
Q 016290          172 TGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKETVAEI  251 (392)
Q Consensus       172 tG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~eei  251 (392)
                      ||++++++||+++||||++||++++.+.+.                                                  
T Consensus       161 ~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~--------------------------------------------------  190 (257)
T PRK07658        161 TSEPITGAEALKWGLVNGVFPEETLLDDAK--------------------------------------------------  190 (257)
T ss_pred             cCCCcCHHHHHHcCCcCeecChhHHHHHHH--------------------------------------------------
Confidence            999999999999999999999887765333                                                  


Q ss_pred             HHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHhcc
Q 016290          252 IKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGIRALTIEK  331 (392)
Q Consensus       252 ~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eGv~a~l~dK  331 (392)
                                       +++++|++.||.+++.+|++++.+...++.+.++.|...+..++.+   +|++||+++|+ +|
T Consensus       191 -----------------~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~---~~~~egi~af~-~k  249 (257)
T PRK07658        191 -----------------KLAKKIAGKSPATTRAVLELLQTTKSSSYYEGVKREAKIFGEVFTS---EDAKEGVQAFL-EK  249 (257)
T ss_pred             -----------------HHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCC---HHHHHHHHHHH-cC
Confidence                             3378899999999999999999988889999999999999999999   99999999999 56


Q ss_pred             CCCCCCCC
Q 016290          332 DNAPKWDP  339 (392)
Q Consensus       332 ~r~P~w~~  339 (392)
                       |+|+|++
T Consensus       250 -r~p~~~~  256 (257)
T PRK07658        250 -RKPSFSG  256 (257)
T ss_pred             -CCCCCCC
Confidence             8999975

>PLN02664 enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase

Probab=100.00  E-value=9.9e-55  Score=416.30  Aligned_cols=254  Identities=24%  Similarity=0.321  Sum_probs=225.7

Q ss_pred             EEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCC-----C----
Q 016290           14 VLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRN-----S----   84 (392)
Q Consensus        14 V~~~~~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~-----~----   84 (392)
                      +..+.+++|++||||||+++|+||.+|+.+|.++|+.++.|+++++|||+|.|++||+|+|++++.....     .    
T Consensus        10 ~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vrvvVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~   89 (275)
T PLN02664         10 IQKSPNSSVFHLNLNRPSQRNALSLDFFTEFPKALSSLDQNPNVSVIILSGAGDHFCSGIDLKTLNSISEQSSSGDRGRS   89 (275)
T ss_pred             EEecCCCCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCCCceeeCcChHHhhhcccccccccchhh
Confidence            3445589999999999999999999999999999999999999999999999999999999998754211     0    


Q ss_pred             chhHHHHHHHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcch-
Q 016290           85 KDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-  163 (392)
Q Consensus        85 ~~~~~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G-  163 (392)
                      ......++....+++..|.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++| 
T Consensus        90 ~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~  169 (275)
T PLN02664         90 GERLRRKIKFLQDAITAIEQCRKPVIAAIHGACIGGGVDIVTACDIRYCSEDAFFSVKEVDLAITADLGTLQRLPSIVGY  169 (275)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCCEEEEECCccccchHHHHHhCCEEEecCCCEeccHHHhhCCCCCccHHHHHHHHhCH
Confidence            0112334444456778899999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             HHHHHHhhcCCcccHHHHHHcCccceecCC-CChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHH
Q 016290          164 HLGEFLALTGARLNGKELVAAGLATHFVPS-EKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDEC  242 (392)
Q Consensus       164 ~~a~~L~ltG~~l~a~eA~~~GLv~~vv~~-~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~  242 (392)
                      .++++|+|||++++|+||+++||||++||+ +++.+.+.                                         
T Consensus       170 ~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~~l~~~~~-----------------------------------------  208 (275)
T PLN02664        170 GNAMELALTGRRFSGSEAKELGLVSRVFGSKEDLDEGVR-----------------------------------------  208 (275)
T ss_pred             HHHHHHHHhCCCCCHHHHHHcCCCceeeCChhHHHHHHH-----------------------------------------
Confidence            999999999999999999999999999995 66654333                                         


Q ss_pred             hCcCCHHHHHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHcCCccHHHH
Q 016290          243 FSKETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYE  322 (392)
Q Consensus       243 f~~~~~eei~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~e  322 (392)
                                                +++++|++.||.+++.+|++++.....++.+++..|...+..++.+   +|++|
T Consensus       209 --------------------------~~a~~ia~~~p~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~---~d~~e  259 (275)
T PLN02664        209 --------------------------LIAEGIAAKSPLAVTGTKAVLLRSRELSVEQGLDYVATWNSAMLVS---DDLNE  259 (275)
T ss_pred             --------------------------HHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccC---hhHHH
Confidence                                      3378999999999999999999988889999999999999888888   99999


Q ss_pred             HHHHHHhccCCCCCCCC
Q 016290          323 GIRALTIEKDNAPKWDP  339 (392)
Q Consensus       323 Gv~a~l~dK~r~P~w~~  339 (392)
                      |+++|+ +| |+|.|++
T Consensus       260 g~~af~-ek-r~p~~~~  274 (275)
T PLN02664        260 AVSAQI-QK-RKPVFAK  274 (275)
T ss_pred             HHHHHh-cc-CCCCCCC
Confidence            999999 66 8999975

>PRK07657 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.2e-54  Score=412.51  Aligned_cols=254  Identities=24%  Similarity=0.361  Sum_probs=231.8

Q ss_pred             CcEEEEE-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCC-CccccCCCchhhccCCCCchhHH
Q 016290           12 QVVLGEE-IGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVG-RAFSAGGDLKMFYDGRNSKDSCL   89 (392)
Q Consensus        12 ~~V~~~~-~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G-~~FcaG~Dl~~l~~~~~~~~~~~   89 (392)
                      +.|++++ +++|++||||||+++|+||.+|+.+|.++++.++.|+++++|||+|.| ++||+|+|++++....  .....
T Consensus         3 ~~v~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~--~~~~~   80 (260)
T PRK07657          3 QNISVDYVTPHVVKITLNRPRAANALSLALLEELQNILTQINEEANVRVVILTGAGEKAFCAGADLKERAGMN--EEQVR   80 (260)
T ss_pred             ceEEEEEccCCEEEEEEeCCcccCCCCHHHHHHHHHHHHHHHhCCCeEEEEEecCCCCceEcCcChHhhhcCC--hhhHH
Confidence            4788886 789999999999999999999999999999999999999999999999 6999999999975421  12234


Q ss_pred             HHHHHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcch-HHHHH
Q 016290           90 EVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HLGEF  168 (392)
Q Consensus        90 ~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G-~~a~~  168 (392)
                      .++...+.++..|.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++| ..+.+
T Consensus        81 ~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~vG~~~a~~  160 (260)
T PRK07657         81 HAVSLIRTTMEMVEQLPQPVIAAINGIALGGGLELALACDFRIAAESASLGLTETTLAIIPGAGGTQRLPRLIGVGRAKE  160 (260)
T ss_pred             HHHHHHHHHHHHHHhCCCCEEEEEcCEeechHHHHHHhCCEEEeeCCCEEcCchhccCcCCCccHHHHHHHHhCHHHHHH
Confidence            55556677888999999999999999999999999999999999999999999999999999999999999999 89999


Q ss_pred             HhhcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHhCcCCH
Q 016290          169 LALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKETV  248 (392)
Q Consensus       169 L~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~  248 (392)
                      |++||++++|+||+++||||++||++++.+.+.++                                             
T Consensus       161 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~---------------------------------------------  195 (260)
T PRK07657        161 LIYTGRRISAQEAKEIGLVEFVVPAHLLEEKAIEI---------------------------------------------  195 (260)
T ss_pred             HHHhCCCCCHHHHHHcCCCCeecCHHHHHHHHHHH---------------------------------------------
Confidence            99999999999999999999999988876544433                                             


Q ss_pred             HHHHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHH
Q 016290          249 AEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGIRALT  328 (392)
Q Consensus       249 eei~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eGv~a~l  328 (392)
                                            +++|+..+|.+++.+|++++.....++.+++..|...+..++.+   +|++||+++|+
T Consensus       196 ----------------------a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~---~~~~e~~~af~  250 (260)
T PRK07657        196 ----------------------AEKIASNGPIAVRQAKEAISNGIQVDLHTGLQIEKQAYEGTIPT---KDRLEGLQAFK  250 (260)
T ss_pred             ----------------------HHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhcC---HhHHHHHHHHh
Confidence                                  78899999999999999999988889999999999999999999   99999999999


Q ss_pred             hccCCCCCCCC
Q 016290          329 IEKDNAPKWDP  339 (392)
Q Consensus       329 ~dK~r~P~w~~  339 (392)
                       +| |+|+|+.
T Consensus       251 -~~-r~~~~~~  259 (260)
T PRK07657        251 -EK-RKPMYKG  259 (260)
T ss_pred             -cC-CCCCCCC
Confidence             66 8999975

>TIGR02280 PaaB1 phenylacetate degradation probable enoyl-CoA hydratase paaB

Probab=100.00  E-value=1.4e-54  Score=411.35  Aligned_cols=253  Identities=27%  Similarity=0.364  Sum_probs=225.9

Q ss_pred             EEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhH-HHHH
Q 016290           14 VLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSC-LEVV   92 (392)
Q Consensus        14 V~~~~~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~-~~~~   92 (392)
                      |+++++++|++||||||+++|+||.+|+.+|.++++.++.|+ +++|||||.|++||+|+|++++.......... ..+.
T Consensus         1 ~~~e~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~-v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~   79 (256)
T TIGR02280         1 ILSALEAGVARLTLNRPDKLNSFTAEMHLELREALERVERDD-ARALMLTGAGRGFCAGQDLSERNPTPGGAPDLGRTIE   79 (256)
T ss_pred             CeEEEECCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCC-cEEEEEECCCCCcccCcCHHHHhhccccchhHHHHHH
Confidence            468889999999999999999999999999999999999998 99999999999999999999976421111111 1122


Q ss_pred             HHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcch-HHHHHHhh
Q 016290           93 YRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HLGEFLAL  171 (392)
Q Consensus        93 ~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G-~~a~~L~l  171 (392)
                      .....+...|..+|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++| ..+++|++
T Consensus        80 ~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~a~f~~pe~~lG~~p~~g~~~~l~~~vG~~~a~~l~l  159 (256)
T TIGR02280        80 TFYNPLVRRLRALPLPVVCAVNGVAAGAGANLALACDIVLAAESARFIQAFAKIGLIPDSGGTWSLPRLVGRARAMGLAM  159 (256)
T ss_pred             HHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEecCCCEEeChhhhcCCCCCccHHHHHHHHhCHHHHHHHHH
Confidence            22245677899999999999999999999999999999999999999999999999999999999999999 89999999


Q ss_pred             cCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHhCcCCHHHH
Q 016290          172 TGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKETVAEI  251 (392)
Q Consensus       172 tG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~eei  251 (392)
                      ||++++|+||+++|||+++||++++.+.+.+                                                 
T Consensus       160 ~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~-------------------------------------------------  190 (256)
T TIGR02280       160 LGEKLDARTAASWGLIWQVVDDAALMDEAQA-------------------------------------------------  190 (256)
T ss_pred             cCCCCCHHHHHHcCCcceeeChHHHHHHHHH-------------------------------------------------
Confidence            9999999999999999999998877654333                                                 


Q ss_pred             HHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHhcc
Q 016290          252 IKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGIRALTIEK  331 (392)
Q Consensus       252 ~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eGv~a~l~dK  331 (392)
                                        ++++|++.||.+++.+|++++.....++.+++..|...+..++.+   +|++||+++|+ +|
T Consensus       191 ------------------~a~~la~~~~~~~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~---~d~~eg~~af~-~k  248 (256)
T TIGR02280       191 ------------------LAVHLAAQPTRGLALTKRAIQAAATNSLDTQLDLERDLQRELGRS---ADYAEGVTAFL-DK  248 (256)
T ss_pred             ------------------HHHHHHhCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcC---hhHHHHHHHHH-cC
Confidence                              378999999999999999999988889999999999999999999   99999999999 56


Q ss_pred             CCCCCCCC
Q 016290          332 DNAPKWDP  339 (392)
Q Consensus       332 ~r~P~w~~  339 (392)
                       |+|+|++
T Consensus       249 -r~p~~~~  255 (256)
T TIGR02280       249 -RNPQFTG  255 (256)
T ss_pred             -CCCCCCC
Confidence             8999975

This family of proteins are found within apparent operons for the degradation of phenylacetic acid. These proteins contain the enoyl-CoA hydratase domain as detected by pfam00378. This activity is consistent with current hypotheses for the degradation pathway which involve the ligation of phenylacetate with coenzyme A (paaF), hydroxylation (paaGHIJK), ring-opening (paaN) and degradation of the resulting fatty acid-like compound to a Krebs cycle intermediate (paaABCDE).

>PRK06563 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1e-54  Score=411.92  Aligned_cols=252  Identities=22%  Similarity=0.273  Sum_probs=223.7

Q ss_pred             EEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhHHHHHH
Q 016290           14 VLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVY   93 (392)
Q Consensus        14 V~~~~~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~~~~~   93 (392)
                      |.++.+++|++||||||+++|+||.+|+.+|.++++.++.|++|++|||+|.|++||+|+|++++........  ..++.
T Consensus         1 ~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vrvvvl~g~g~~F~aG~Dl~~~~~~~~~~~--~~~~~   78 (255)
T PRK06563          1 VSRERRGHVLLIGLDRPAKRNAFDSAMLDDLALALGEYEADDELRVAVLFAHGEHFTAGLDLADVAPKLAAGG--FPFPE   78 (255)
T ss_pred             CeEEEECCEEEEEECCcccccCCCHHHHHHHHHHHHHHhhCCCcEEEEEECCCCCCcCCcCHHHHhhccccch--hhhhh
Confidence            5678899999999999999999999999999999999999999999999999999999999998854211111  12222


Q ss_pred             HHHHHH-HHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcch-HHHHHHhh
Q 016290           94 RMYWLC-HHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HLGEFLAL  171 (392)
Q Consensus        94 ~~~~l~-~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G-~~a~~L~l  171 (392)
                      ...+.+ ..+.++||||||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|+|++| ..+++|++
T Consensus        79 ~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~l  158 (255)
T PRK06563         79 GGIDPWGTVGRRLSKPLVVAVQGYCLTLGIELMLAADIVVAADNTRFAQLEVQRGILPFGGATLRFPQAAGWGNAMRYLL  158 (255)
T ss_pred             hhhHHHHHHHhcCCCCEEEEEcCeeecHHHHHHHhCCEEEecCCCEEeChhhhcCCCCCccHHHHHHHHhhHHHHHHHHH
Confidence            222222 3578999999999999999999999999999999999999999999999999999999999999 89999999


Q ss_pred             cCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHhCcCCHHHH
Q 016290          172 TGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKETVAEI  251 (392)
Q Consensus       172 tG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~eei  251 (392)
                      ||++++++||+++||||++||++++.+.+.                                                  
T Consensus       159 tg~~~~a~eA~~~Glv~~vv~~~~l~~~a~--------------------------------------------------  188 (255)
T PRK06563        159 TGDEFDAQEALRLGLVQEVVPPGEQLERAI--------------------------------------------------  188 (255)
T ss_pred             cCCCcCHHHHHHcCCCcEeeCHHHHHHHHH--------------------------------------------------
Confidence            999999999999999999999887754333                                                  


Q ss_pred             HHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHhcc
Q 016290          252 IKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGIRALTIEK  331 (392)
Q Consensus       252 ~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eGv~a~l~dK  331 (392)
                                       +.+++|++.||.+++.+|++++.....++.++++.|...+..++.+   +|++||+++|+ +|
T Consensus       189 -----------------~~a~~la~~~~~a~~~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~~---~d~~eg~~af~-~k  247 (255)
T PRK06563        189 -----------------ELAERIARAAPLGVQATLASARAAVREGEAAAAAQLPPELRPLFTS---EDAKEGVQAFL-ER  247 (255)
T ss_pred             -----------------HHHHHHHhcCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcC---chHHHHHHHHh-cC
Confidence                             3378899999999999999999888889999999999999999999   99999999999 66


Q ss_pred             CCCCCCCC
Q 016290          332 DNAPKWDP  339 (392)
Q Consensus       332 ~r~P~w~~  339 (392)
                       |+|.|++
T Consensus       248 -r~p~~~~  254 (255)
T PRK06563        248 -RPARFKG  254 (255)
T ss_pred             -CCCCCCC
Confidence             8899975

>PRK08258 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=2.5e-54  Score=413.91  Aligned_cols=258  Identities=19%  Similarity=0.252  Sum_probs=231.5

Q ss_pred             CCCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCC--Cchh
Q 016290           10 DEQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRN--SKDS   87 (392)
Q Consensus        10 ~~~~V~~~~~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~--~~~~   87 (392)
                      ....|.++.+++|++||||||+++|+||.+|+.+|.++++.++.|+++++|||+|.|++||+|+|++++.....  ....
T Consensus        15 ~~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~vr~vVltg~g~~FsaG~Dl~~~~~~~~~~~~~~   94 (277)
T PRK08258         15 EARHFLWEVDDGVATITLNRPERKNPLTFESYAELRDLFRELVYADDVKAVVLTGAGGNFCSGGDVHEIIGPLTKMDMPE   94 (277)
T ss_pred             cccceEEEEECCEEEEEeCCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEeCCCCCcccccCHHHHhccccccChhH
Confidence            33468999999999999999999999999999999999999999999999999999999999999998753211  1112


Q ss_pred             HHHHHHHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccC-CchhHHHHhhcch-HH
Q 016290           88 CLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHT-DCGFSFIHSRLPG-HL  165 (392)
Q Consensus        88 ~~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P-~~G~s~~L~rl~G-~~  165 (392)
                      ...+.....+++..|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++| ++|++++|+|++| ..
T Consensus        95 ~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~~g~~~~l~~~vG~~~  174 (277)
T PRK08258         95 LLAFTRMTGDLVKAMRACPQPIIAAVDGVCAGAGAILAMASDLRLGTPSAKTAFLFTRVGLAGADMGACALLPRIIGQGR  174 (277)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEecCCCEEeccccccCcCCCCchHHHHHHHHhCHHH
Confidence            234444456788899999999999999999999999999999999999999999999999995 8899999999999 89


Q ss_pred             HHHHhhcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHhCc
Q 016290          166 GEFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSK  245 (392)
Q Consensus       166 a~~L~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~  245 (392)
                      +++|+|||++++|+||+++||||++||++++.+.+.+                                           
T Consensus       175 a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~-------------------------------------------  211 (277)
T PRK08258        175 ASELLYTGRSMSAEEGERWGFFNRLVEPEELLAEAQA-------------------------------------------  211 (277)
T ss_pred             HHHHHHcCCCCCHHHHHHcCCCcEecCHHHHHHHHHH-------------------------------------------
Confidence            9999999999999999999999999998877654333                                           


Q ss_pred             CCHHHHHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHcCCccHHHHHHH
Q 016290          246 ETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGIR  325 (392)
Q Consensus       246 ~~~eei~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eGv~  325 (392)
                                              ++++|++.||.+++.+|++++.....++++.+..|...+..++.+   +|++||++
T Consensus       212 ------------------------~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s---~d~~eg~~  264 (277)
T PRK08258        212 ------------------------LARRLAAGPTFAHGMTKTMLHQEWDMGLEEAIEAEAQAQAICMQT---EDFRRAYE  264 (277)
T ss_pred             ------------------------HHHHHHhCCHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhcC---chHHHHHH
Confidence                                    378999999999999999999988889999999999999999999   99999999


Q ss_pred             HHHhccCCCCCCCC
Q 016290          326 ALTIEKDNAPKWDP  339 (392)
Q Consensus       326 a~l~dK~r~P~w~~  339 (392)
                      +|+ +| |+|+|++
T Consensus       265 af~-ek-r~p~~~~  276 (277)
T PRK08258        265 AFV-AK-RKPVFEG  276 (277)
T ss_pred             HHh-cC-CCCCCCC
Confidence            999 66 8999975

>PRK06494 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.7e-54  Score=411.37  Aligned_cols=253  Identities=28%  Similarity=0.390  Sum_probs=223.4

Q ss_pred             CCCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCC-CccccCCCchhhccCCCCchhH
Q 016290           10 DEQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVG-RAFSAGGDLKMFYDGRNSKDSC   88 (392)
Q Consensus        10 ~~~~V~~~~~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G-~~FcaG~Dl~~l~~~~~~~~~~   88 (392)
                      ++..|.++++++|++||||||+++|+||.+|+.+|.++++.++.|++|++|||+|.| ++||+|+|++++......... 
T Consensus         2 ~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~-   80 (259)
T PRK06494          2 ALPFSTVERKGHVTIVTLNRPEVMNALHLDAHFELEEVFDDFAADPEQWVAIVTGAGDKAFSAGNDLKEQAAGGKRGWP-   80 (259)
T ss_pred             CCceeEEEeECCEEEEEEcCccccCCCCHHHHHHHHHHHHHHhhCCCcEEEEEEcCCCCceeccccHHhHhhcCcchhh-
Confidence            456789999999999999999999999999999999999999999999999999999 899999999987542111111 


Q ss_pred             HHHHHHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcch-HHHH
Q 016290           89 LEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HLGE  167 (392)
Q Consensus        89 ~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G-~~a~  167 (392)
                      ...+   ..+ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++| ..++
T Consensus        81 ~~~~---~~~-~~~~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~  156 (259)
T PRK06494         81 ESGF---GGL-TSRFDLDKPIIAAVNGVAMGGGFELALACDLIVAAENATFALPEPRVGLAALAGGLHRLPRQIGLKRAM  156 (259)
T ss_pred             hHHH---HHH-HHHhcCCCCEEEEECCEEecHHHHHHHhCCEEEEeCCCEEeCcccccCCCCCchHHHHHHHHcCHHHHH
Confidence            1111   222 3345899999999999999999999999999999999999999999999999999999999999 9999


Q ss_pred             HHhhcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHhCcCC
Q 016290          168 FLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKET  247 (392)
Q Consensus       168 ~L~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~~~  247 (392)
                      +|++||++++|+||+++||||++||++++.+.+.+                                             
T Consensus       157 ~lll~g~~~~a~eA~~~GLv~~vv~~~~l~~~a~~---------------------------------------------  191 (259)
T PRK06494        157 GMILTGRRVTAREGLELGFVNEVVPAGELLAAAER---------------------------------------------  191 (259)
T ss_pred             HHHHcCCcCCHHHHHHcCCCcEecCHhHHHHHHHH---------------------------------------------
Confidence            99999999999999999999999998877654333                                             


Q ss_pred             HHHHHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHH--HHHHHHHHHcCCccHHHHHHH
Q 016290          248 VAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKE--FRLTINILRAIISADIYEGIR  325 (392)
Q Consensus       248 ~eei~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E--~~~~~~~~~~~~~~d~~eGv~  325 (392)
                                            .+++|++.||.+++.+|+++++....++.+++..|  ...+..++.+   +|++||++
T Consensus       192 ----------------------~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~---~d~~eg~~  246 (259)
T PRK06494        192 ----------------------WADDILACSPLSIRASKQAVYRGLEVSLEEAITAQRDYPAVEARRAS---QDYIEGPK  246 (259)
T ss_pred             ----------------------HHHHHHhcCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcC---ccHHHHHH
Confidence                                  37899999999999999999998888999999999  5677888888   99999999


Q ss_pred             HHHhccCCCCCCCC
Q 016290          326 ALTIEKDNAPKWDP  339 (392)
Q Consensus       326 a~l~dK~r~P~w~~  339 (392)
                      +|+ +| |+|+|++
T Consensus       247 af~-~k-r~p~~~~  258 (259)
T PRK06494        247 AFA-EK-RPPRWKG  258 (259)
T ss_pred             HHH-cc-CCCCCCC
Confidence            999 56 8999975

>PRK08140 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=2.6e-54  Score=410.83  Aligned_cols=257  Identities=26%  Similarity=0.330  Sum_probs=228.5

Q ss_pred             CCCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCC-CchhH
Q 016290           10 DEQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRN-SKDSC   88 (392)
Q Consensus        10 ~~~~V~~~~~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~-~~~~~   88 (392)
                      +++.|.++.+++|++||||||+++|+||.+|+.+|.++++.++ |+++++|||+|+|++||+|+|++++..... .....
T Consensus         2 ~~~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~~~~~~-d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~   80 (262)
T PRK08140          2 MYETILLAIEAGVATLTLNRPDKLNSFTREMHRELREALDQVE-DDGARALLLTGAGRGFCAGQDLADRDVTPGGAMPDL   80 (262)
T ss_pred             CCceEEEEeECCEEEEEecCCcccCCCCHHHHHHHHHHHHHhc-CCCceEEEEECCCCCcccCcChHHHhccccccchhh
Confidence            3557899999999999999999999999999999999999999 999999999999999999999998753211 11111


Q ss_pred             HHHHHH-HHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcch-HHH
Q 016290           89 LEVVYR-MYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HLG  166 (392)
Q Consensus        89 ~~~~~~-~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G-~~a  166 (392)
                      ...+.. ...++..|.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++| ..+
T Consensus        81 ~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~vG~~~a  160 (262)
T PRK08140         81 GESIETFYNPLVRRLRALPLPVIAAVNGVAAGAGANLALACDIVLAARSASFIQAFVKIGLVPDSGGTWFLPRLVGMARA  160 (262)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCEEEEECCeeehhHHHHHHhCCEEEecCCCEEeccccccCCCCCccHHHHHHHHhCHHHH
Confidence            112222 234678899999999999999999999999999999999999999999999999999999999999999 899


Q ss_pred             HHHhhcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHhCcC
Q 016290          167 EFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKE  246 (392)
Q Consensus       167 ~~L~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~~  246 (392)
                      ++|++||++++++||+++||||++||++++.+.+.                                             
T Consensus       161 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~---------------------------------------------  195 (262)
T PRK08140        161 LGLALLGEKLSAEQAEQWGLIWRVVDDAALADEAQ---------------------------------------------  195 (262)
T ss_pred             HHHHHcCCCcCHHHHHHcCCccEeeChHHHHHHHH---------------------------------------------
Confidence            99999999999999999999999999887765333                                             


Q ss_pred             CHHHHHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHcCCccHHHHHHHH
Q 016290          247 TVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGIRA  326 (392)
Q Consensus       247 ~~eei~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eGv~a  326 (392)
                                            +++++|++.||.+++.+|++++.....++.+++..|...+..++.+   +|++||+++
T Consensus       196 ----------------------~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~---~~~~e~~~a  250 (262)
T PRK08140        196 ----------------------QLAAHLATQPTRGLALIKQAMNASATNTLDAQLDLERDLQREAGRS---ADYAEGVSA  250 (262)
T ss_pred             ----------------------HHHHHHHhCCHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHhcC---hhHHHHHHH
Confidence                                  3378999999999999999999888889999999999999999999   999999999


Q ss_pred             HHhccCCCCCCCC
Q 016290          327 LTIEKDNAPKWDP  339 (392)
Q Consensus       327 ~l~dK~r~P~w~~  339 (392)
                      |+ +| |+|.|.+
T Consensus       251 f~-~k-r~p~~~~  261 (262)
T PRK08140        251 FL-EK-RAPRFTG  261 (262)
T ss_pred             Hh-cC-CCCCCCC
Confidence            99 56 8999975

>PRK08252 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=2.5e-54  Score=409.07  Aligned_cols=250  Identities=26%  Similarity=0.347  Sum_probs=222.8

Q ss_pred             CcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhHHHH
Q 016290           12 QVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEV   91 (392)
Q Consensus        12 ~~V~~~~~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~~~   91 (392)
                      +.|.++++++|++||||||+++|+||.+|+.+|.+++++++.|++|++|||+|.|++||+|+|++++..... .......
T Consensus         3 ~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~-~~~~~~~   81 (254)
T PRK08252          3 DEVLVERRGRVLIITINRPEARNAVNAAVAQGLAAALDELDADPDLSVGILTGAGGTFCAGMDLKAFARGER-PSIPGRG   81 (254)
T ss_pred             ceEEEEEECCEEEEEECCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCceEcCcCHHHHhcccc-hhhhHHH
Confidence            458899999999999999999999999999999999999999999999999999999999999999864211 1111111


Q ss_pred             HHHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcch-HHHHHHh
Q 016290           92 VYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HLGEFLA  170 (392)
Q Consensus        92 ~~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G-~~a~~L~  170 (392)
                      +   ..+.  ...+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++| ..+++|+
T Consensus        82 ~---~~~~--~~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~l~  156 (254)
T PRK08252         82 F---GGLT--ERPPRKPLIAAVEGYALAGGFELALACDLIVAARDAKFGLPEVKRGLVAAGGGLLRLPRRIPYHIAMELA  156 (254)
T ss_pred             H---HHHH--HhcCCCCEEEEECCEEehHHHHHHHhCCEEEEeCCCEEeCchhhcCCCCCchHHHHHHHHcCHHHHHHHH
Confidence            1   1221  24799999999999999999999999999999999999999999999999999999999999 9999999


Q ss_pred             hcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHhCcCCHHH
Q 016290          171 LTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKETVAE  250 (392)
Q Consensus       171 ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~ee  250 (392)
                      +||++++++||+++||||++||++++.+.+.                                                 
T Consensus       157 l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~-------------------------------------------------  187 (254)
T PRK08252        157 LTGDMLTAERAHELGLVNRLTEPGQALDAAL-------------------------------------------------  187 (254)
T ss_pred             HcCCccCHHHHHHcCCcceecCcchHHHHHH-------------------------------------------------
Confidence            9999999999999999999999887765333                                                 


Q ss_pred             HHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHhc
Q 016290          251 IIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGIRALTIE  330 (392)
Q Consensus       251 i~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eGv~a~l~d  330 (392)
                                        +++++|++.||.+++.+|++++.....++.+++..|...+..++.+   +|++||+++|+ +
T Consensus       188 ------------------~~a~~l~~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~---~~~~eg~~af~-~  245 (254)
T PRK08252        188 ------------------ELAERIAANGPLAVAASKRIVVESGDWSEDEMFARQRELIAPVFTS---ADAKEGATAFA-E  245 (254)
T ss_pred             ------------------HHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcC---chHHHHHHHHh-c
Confidence                              3478899999999999999999888889999999999999999999   99999999999 5


Q ss_pred             cCCCCCCCC
Q 016290          331 KDNAPKWDP  339 (392)
Q Consensus       331 K~r~P~w~~  339 (392)
                      | |+|+|..
T Consensus       246 k-r~p~~~~  253 (254)
T PRK08252        246 K-RAPVWTG  253 (254)
T ss_pred             C-CCCCCCC
Confidence            6 8999975

>PRK09245 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=2.3e-54  Score=412.02  Aligned_cols=256  Identities=23%  Similarity=0.347  Sum_probs=228.6

Q ss_pred             CcEEEEEeCCEEEEEEcCCCCCCCCCH-HHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCC----Cch
Q 016290           12 QVVLGEEIGNVRLVTLNRPRQLNVISS-KVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRN----SKD   86 (392)
Q Consensus        12 ~~V~~~~~~~v~~itLnrp~~lNal~~-~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~----~~~   86 (392)
                      +.|.++++++|++||||||+++|+||. +|+.+|.++++.++.|++|++|||+|.|++||+|+|++++.....    ...
T Consensus         3 ~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~   82 (266)
T PRK09245          3 DFLLVERDGHIVTLTMNRPETRNALSDNDAVDALVAACAAINADRSVRAVILTGAGTAFSSGGNVKDMRARVGAFGGSPA   82 (266)
T ss_pred             CceEEEEECCEEEEEECCcccccCCChHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcccCcCHHHHhhccccccccch
Confidence            358999999999999999999999995 999999999999999999999999999999999999999854211    011


Q ss_pred             hHHHHH-HHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcch-H
Q 016290           87 SCLEVV-YRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-H  164 (392)
Q Consensus        87 ~~~~~~-~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G-~  164 (392)
                      .....+ .....++..|.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++| .
T Consensus        83 ~~~~~~~~~~~~~~~~l~~~~kpvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~vG~~  162 (266)
T PRK09245         83 DIRQGYRHGIQRIPLALYNLEVPVIAAVNGPAIGAGCDLACMCDIRIASETARFAESFVKLGLIPGDGGAWLLPRIIGMA  162 (266)
T ss_pred             hHHHHHHHHHHHHHHHHHcCCCCEEEEECCEeecHHHHHHHhCCEEEecCCCEEcccccccCcCCCcchhhhHHHHhhHH
Confidence            112222 23456778899999999999999999999999999999999999999999999999999999999999999 8


Q ss_pred             HHHHHhhcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHhC
Q 016290          165 LGEFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFS  244 (392)
Q Consensus       165 ~a~~L~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~  244 (392)
                      .+++|++||++++|+||+++||||++||++++.+.+.+                                          
T Consensus       163 ~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~------------------------------------------  200 (266)
T PRK09245        163 RAAEMAFTGDAIDAATALEWGLVSRVVPADQLLPAARA------------------------------------------  200 (266)
T ss_pred             HHHHHHHcCCCcCHHHHHHcCCcceecCHHHHHHHHHH------------------------------------------
Confidence            99999999999999999999999999998877654333                                          


Q ss_pred             cCCHHHHHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHcCCccHHHHHH
Q 016290          245 KETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGI  324 (392)
Q Consensus       245 ~~~~eei~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eGv  324 (392)
                                               ++++|++.||.+++.+|++++.....++.+.+..|......++.+   +|++||+
T Consensus       201 -------------------------~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~---~d~~eg~  252 (266)
T PRK09245        201 -------------------------LAERIAANPPHALRLTKRLLREGQHASLDTLLELSAAYQALAHHT---ADHREAV  252 (266)
T ss_pred             -------------------------HHHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcC---HhHHHHH
Confidence                                     378999999999999999999988888999999999999999999   9999999


Q ss_pred             HHHHhccCCCCCCCC
Q 016290          325 RALTIEKDNAPKWDP  339 (392)
Q Consensus       325 ~a~l~dK~r~P~w~~  339 (392)
                      ++|+ +| |+|.|+.
T Consensus       253 ~af~-~k-r~p~~~~  265 (266)
T PRK09245        253 DAFL-EK-RPPVFTG  265 (266)
T ss_pred             HHHH-cC-CCCCCCC
Confidence            9999 66 8999975

>PLN02600 enoyl-CoA hydratase

Probab=100.00  E-value=1.6e-54  Score=409.69  Aligned_cols=247  Identities=24%  Similarity=0.372  Sum_probs=225.2

Q ss_pred             eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCC-CccccCCCchhhccCCCCchhHHHHHHHHHH
Q 016290           19 IGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVG-RAFSAGGDLKMFYDGRNSKDSCLEVVYRMYW   97 (392)
Q Consensus        19 ~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G-~~FcaG~Dl~~l~~~~~~~~~~~~~~~~~~~   97 (392)
                      +++|++||||||+++|+||.+|+.+|.++++.++.|++|++|||||.| ++||+|+|++++....  ......++.....
T Consensus         2 ~~~v~~itlnrp~~~Nal~~~~~~~l~~~~~~~~~d~~vr~vVl~g~~g~~F~aG~Dl~~~~~~~--~~~~~~~~~~~~~   79 (251)
T PLN02600          2 DSGIVELRLDRPEAKNAIGKEMLRGLRSAFEKIQADASARVVMLRSSVPGVFCAGADLKERRKMS--PSEVQKFVNSLRS   79 (251)
T ss_pred             CCcEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEecCCCCceeeCcCHHHHhccC--hHHHHHHHHHHHH
Confidence            478999999999999999999999999999999999999999999985 9999999999875421  1222445555667


Q ss_pred             HHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcch-HHHHHHhhcCCcc
Q 016290           98 LCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HLGEFLALTGARL  176 (392)
Q Consensus        98 l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G-~~a~~L~ltG~~l  176 (392)
                      ++..|..+|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++| ..+++|+|||+++
T Consensus        80 ~~~~l~~~~kPvIAav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~~l~ltg~~~  159 (251)
T PLN02600         80 TFSSLEALSIPTIAVVEGAALGGGLELALSCDLRICGEEAVFGLPETGLAIIPGAGGTQRLPRLVGRSRAKELIFTGRRI  159 (251)
T ss_pred             HHHHHHhCCCCEEEEecCeecchhHHHHHhCCEEEeeCCCEEeCcccccCcCCCchHHHHHHHHhCHHHHHHHHHhCCcc
Confidence            888999999999999999999999999999999999999999999999999999999999999999 8999999999999


Q ss_pred             cHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHhCcCCHHHHHHHHH
Q 016290          177 NGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKETVAEIIKSFE  256 (392)
Q Consensus       177 ~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~eei~~~l~  256 (392)
                      +++||+++||||++||++++.+.+.                                                       
T Consensus       160 ~a~eA~~~Glv~~vv~~~~~~~~a~-------------------------------------------------------  184 (251)
T PLN02600        160 GAREAASMGLVNYCVPAGEAYEKAL-------------------------------------------------------  184 (251)
T ss_pred             CHHHHHHcCCCcEeeChhHHHHHHH-------------------------------------------------------
Confidence            9999999999999999887765333                                                       


Q ss_pred             HhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHhccCCCCC
Q 016290          257 AEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGIRALTIEKDNAPK  336 (392)
Q Consensus       257 ~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eGv~a~l~dK~r~P~  336 (392)
                                  +++++|++.||.+++.+|++++.....++.+.+..|...+..++.+   +|++||+++|+ +| |+|+
T Consensus       185 ------------~~a~~la~~~p~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~---~d~~eg~~af~-ek-r~p~  247 (251)
T PLN02600        185 ------------ELAQEINQKGPLAIKMAKKAINEGSEVDMASGLEIEEECYEQVLKT---KDRLEGLAAFA-EK-RKPV  247 (251)
T ss_pred             ------------HHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHhCC---HHHHHHHHHHh-cC-CCCC
Confidence                        3478999999999999999999888889999999999999999999   99999999999 66 8999


Q ss_pred             CCC
Q 016290          337 WDP  339 (392)
Q Consensus       337 w~~  339 (392)
                      |++
T Consensus       248 ~~~  250 (251)
T PLN02600        248 YTG  250 (251)
T ss_pred             CCC
Confidence            975

>PRK08138 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=3.7e-54  Score=409.44  Aligned_cols=254  Identities=26%  Similarity=0.350  Sum_probs=229.3

Q ss_pred             CCCcEEEEE-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhH
Q 016290           10 DEQVVLGEE-IGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSC   88 (392)
Q Consensus        10 ~~~~V~~~~-~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~   88 (392)
                      ..+.|.++. +++|++||||||+++|+||.+|+.+|.++++.++.|++|++|||+|.|++||+|+|++++.....    .
T Consensus         5 ~~~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~----~   80 (261)
T PRK08138          5 ATDVVLLERPADGVALLRLNRPEARNALNMEVRQQLAEHFTELSEDPDIRAIVLTGGEKVFAAGADIKEFATAGA----I   80 (261)
T ss_pred             CCCCEEEEEccCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCeeEEEEECCCCCeeCCcCHHHHhccch----h
Confidence            345678887 78999999999999999999999999999999999999999999999999999999998764211    1


Q ss_pred             HHHHHHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcch-HHHH
Q 016290           89 LEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HLGE  167 (392)
Q Consensus        89 ~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G-~~a~  167 (392)
                      ..+.....+++..|.++|||+||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|+|++| ..++
T Consensus        81 ~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~  160 (261)
T PRK08138         81 EMYLRHTERYWEAIAQCPKPVIAAVNGYALGGGCELAMHADIIVAGESASFGQPEIKVGLMPGAGGTQRLVRAVGKFKAM  160 (261)
T ss_pred             HHHHHHHHHHHHHHHhCCCCEEEEEccEEEcHHHHHHHhCCEEEecCCCEeeCcccccccCCCCcHHHHHHHHhCHHHHH
Confidence            233344566788899999999999999999999999999999999999999999999999999999999999999 8999


Q ss_pred             HHhhcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHhCcCC
Q 016290          168 FLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKET  247 (392)
Q Consensus       168 ~L~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~~~  247 (392)
                      +|+|||++++++||+++||||++||++++.+.+.++                                            
T Consensus       161 ~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~--------------------------------------------  196 (261)
T PRK08138        161 RMALTGCMVPAPEALAIGLVSEVVEDEQTLPRALEL--------------------------------------------  196 (261)
T ss_pred             HHHHcCCCCCHHHHHHCCCCcEecCchHHHHHHHHH--------------------------------------------
Confidence            999999999999999999999999988776533333                                            


Q ss_pred             HHHHHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHcCCccHHHHHHHHH
Q 016290          248 VAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGIRAL  327 (392)
Q Consensus       248 ~eei~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eGv~a~  327 (392)
                                             +++|++.+|.+++.+|++++.....++.+++..|.+.+..++.+   +|++||+++|
T Consensus       197 -----------------------a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~---~~~~~~i~af  250 (261)
T PRK08138        197 -----------------------AREIARMPPLALAQIKEVVLAGADAPLDAALALERKAFQLLFDS---EDQKEGMDAF  250 (261)
T ss_pred             -----------------------HHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcC---HHHHHHHHHH
Confidence                                   67888999999999999999988889999999999999999999   9999999999


Q ss_pred             HhccCCCCCCCC
Q 016290          328 TIEKDNAPKWDP  339 (392)
Q Consensus       328 l~dK~r~P~w~~  339 (392)
                      + +| |+|+|.+
T Consensus       251 ~-~k-r~~~~~~  260 (261)
T PRK08138        251 L-EK-RKPAYKG  260 (261)
T ss_pred             h-cC-CCCCCCC
Confidence            9 66 8999975

>PRK05981 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=4e-54  Score=410.43  Aligned_cols=259  Identities=20%  Similarity=0.266  Sum_probs=231.1

Q ss_pred             CCCCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCC-CceEEEEEcCCCccccCCCchhhccCCCCc--
Q 016290            9 PDEQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDD-QAKLVIVKGVGRAFSAGGDLKMFYDGRNSK--   85 (392)
Q Consensus         9 ~~~~~V~~~~~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~-~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~--   85 (392)
                      |+++.|.++++++|++||||||+++|+||.+|+.+|.++++.++.|+ ++++|||+|.|++||+|+|++++.......  
T Consensus         1 ~~~~~v~~~~~~~i~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~   80 (266)
T PRK05981          1 MQFKKVTLDFDGGVAILTLDHPEVMNAVSIDMLGGLAEALDAIEDGKAEVRCLVLTGAGRGFCTGANLQGRGSGGRESDS   80 (266)
T ss_pred             CCcceEEEEeECCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcccccCHHhhhcccccccc
Confidence            35678999999999999999999999999999999999999999876 499999999999999999999976421100  


Q ss_pred             --hhHHHHHHHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcch
Q 016290           86 --DSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG  163 (392)
Q Consensus        86 --~~~~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G  163 (392)
                        .....+......+...|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|
T Consensus        81 ~~~~~~~~~~~~~~~~~~l~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~~e~~lG~~p~~g~~~~l~~~vg  160 (266)
T PRK05981         81 GGDAGAALETAYHPFLRRLRNLPCPIVTAVNGPAAGVGMSFALMGDLILCARSAYFLQAFRRIGLVPDGGSTWLLPRLVG  160 (266)
T ss_pred             cchhHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEecCCCEEechHhhcCCCCCccHHHHHHHHhH
Confidence              111233344567888999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             -HHHHHHhhcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHH
Q 016290          164 -HLGEFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDEC  242 (392)
Q Consensus       164 -~~a~~L~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~  242 (392)
                       ..+++|++||++++|+||+++|||+++||++++.+.+.                                         
T Consensus       161 ~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~~~~a~-----------------------------------------  199 (266)
T PRK05981        161 KARAMELSLLGEKLPAETALQWGLVNRVVDDAELMAEAM-----------------------------------------  199 (266)
T ss_pred             HHHHHHHHHhCCCcCHHHHHHcCCceEeeCHhHHHHHHH-----------------------------------------
Confidence             89999999999999999999999999999887765333                                         


Q ss_pred             hCcCCHHHHHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHcCCccHHHH
Q 016290          243 FSKETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYE  322 (392)
Q Consensus       243 f~~~~~eei~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~e  322 (392)
                                                +++++|++.||.+++.+|++++.....++.+.+..|...+..++.+   +|++|
T Consensus       200 --------------------------~~a~~l~~~~~~a~~~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~s---~d~~e  250 (266)
T PRK05981        200 --------------------------KLAHELANGPTVALGLIRKLYWDSPENDFEEQLNLEREAQRIAGKT---EDFKE  250 (266)
T ss_pred             --------------------------HHHHHHHcCCHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHhcC---hhHHH
Confidence                                      3378899999999999999999888889999999999999999999   99999


Q ss_pred             HHHHHHhccCCCCCCCC
Q 016290          323 GIRALTIEKDNAPKWDP  339 (392)
Q Consensus       323 Gv~a~l~dK~r~P~w~~  339 (392)
                      |+++|+ +| |+|+|++
T Consensus       251 ~~~af~-~k-r~~~~~~  265 (266)
T PRK05981        251 GVGAFL-QK-RPAQFKG  265 (266)
T ss_pred             HHHHHh-cC-CCCCCCC
Confidence            999999 66 8999975

>PRK05995 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=3.3e-54  Score=410.11  Aligned_cols=258  Identities=26%  Similarity=0.362  Sum_probs=228.1

Q ss_pred             CCCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCC-CchhH
Q 016290           10 DEQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRN-SKDSC   88 (392)
Q Consensus        10 ~~~~V~~~~~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~-~~~~~   88 (392)
                      +++.|.++.+++|++||||||+++|+||.+|+.+|.++++.++.|++|++|||||+|++||+|+|++++..... .....
T Consensus         2 ~~~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~   81 (262)
T PRK05995          2 MYETLEIEQRGQVATVTLNRPDVRNAFNETVIAELTAAFRALDADDSVRAVVLAGAGKAFCAGADLNWMKKMAGYSDDEN   81 (262)
T ss_pred             CCceEEEEeeCCEEEEEEcCcccccCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCccccCcCHHHHhhhcccCchhh
Confidence            45679999999999999999999999999999999999999999999999999999999999999998753211 11111


Q ss_pred             HHHHHHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcch-HHHH
Q 016290           89 LEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HLGE  167 (392)
Q Consensus        89 ~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G-~~a~  167 (392)
                      ...+...+.++..|.++|||+||+|||+|+|||++|+++|||||++++++|++||+++|++|++|+++ |+|++| ..++
T Consensus        82 ~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~-l~~~vg~~~a~  160 (262)
T PRK05995         82 RADARRLADMLRAIYRCPKPVIARVHGDAYAGGMGLVAACDIAVAADHAVFCLSEVRLGLIPATISPY-VIRAMGERAAR  160 (262)
T ss_pred             hhHHHHHHHHHHHHHcCCCCEEEEECCEEEhhHHHHHHhCCEEEeeCCCEEeCcccccccCccchHHH-HHHHhCHHHHH
Confidence            22234456788899999999999999999999999999999999999999999999999999988765 888999 9999


Q ss_pred             HHhhcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHhCcCC
Q 016290          168 FLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKET  247 (392)
Q Consensus       168 ~L~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~~~  247 (392)
                      +|++||++++|+||+++||||++||++++.+.+.++                                            
T Consensus       161 ~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~--------------------------------------------  196 (262)
T PRK05995        161 RYFLTAERFDAAEALRLGLVHEVVPAEALDAKVDEL--------------------------------------------  196 (262)
T ss_pred             HHHHcCCccCHHHHHHcCCCCeecCHHHHHHHHHHH--------------------------------------------
Confidence            999999999999999999999999988776544433                                            


Q ss_pred             HHHHHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHH-HHHHHHHHHHHHHcCCccHHHHHHHH
Q 016290          248 VAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAEC-LKKEFRLTINILRAIISADIYEGIRA  326 (392)
Q Consensus       248 ~eei~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~-l~~E~~~~~~~~~~~~~~d~~eGv~a  326 (392)
                                             +++|++.||.+++.+|++++.....++.+. +..|...+..++.+   +|++||+++
T Consensus       197 -----------------------a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~~---~d~~e~~~a  250 (262)
T PRK05995        197 -----------------------LAALVANSPQAVRAGKRLVRDVAGRPIDAALIADTASRIALIRAT---EEAREGVAA  250 (262)
T ss_pred             -----------------------HHHHHhCCHHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHHHhcC---HHHHHHHHH
Confidence                                   789999999999999999998877889888 88888888888889   999999999


Q ss_pred             HHhccCCCCCCCCC
Q 016290          327 LTIEKDNAPKWDPP  340 (392)
Q Consensus       327 ~l~dK~r~P~w~~~  340 (392)
                      |+ +| |+|+|+++
T Consensus       251 f~-~k-r~p~~~~~  262 (262)
T PRK05995        251 FL-EK-RKPAWRGR  262 (262)
T ss_pred             Hh-cC-CCCCCCCC
Confidence            99 66 89999763

>PRK07511 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=6.3e-54  Score=407.75  Aligned_cols=255  Identities=24%  Similarity=0.332  Sum_probs=231.2

Q ss_pred             CcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCC-CchhHHH
Q 016290           12 QVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRN-SKDSCLE   90 (392)
Q Consensus        12 ~~V~~~~~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~-~~~~~~~   90 (392)
                      .+|.++++++|++||||||+++|+||.+|+.+|.++|+.+++|++|++|||+|.|++||+|+|++++..... .......
T Consensus         3 ~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~   82 (260)
T PRK07511          3 AELLSRREGSTLVLTLSNPGARNALHPDMYAAGIEALNTAERDPSIRAVVLTGAGGFFCAGGNLNRLLENRAKPPSVQAA   82 (260)
T ss_pred             CeeEEEeECCEEEEEECCcccccCCCHHHHHHHHHHHHHhccCCCeEEEEEECCCCCcccCcCHHHHhhcccccchhHHH
Confidence            358899999999999999999999999999999999999999999999999999999999999999864211 1122245


Q ss_pred             HHHHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcch-HHHHHH
Q 016290           91 VVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HLGEFL  169 (392)
Q Consensus        91 ~~~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G-~~a~~L  169 (392)
                      ++...+.++..|.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++| ..+++|
T Consensus        83 ~~~~~~~~~~~l~~~~kpvIAav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~l  162 (260)
T PRK07511         83 SIDGLHDWIRAIRAFPKPVIAAVEGAAAGAGFSLALACDLLVAARDAKFVMAYVKVGLTPDGGGSWFLARALPRQLATEL  162 (260)
T ss_pred             HHHHHHHHHHHHHcCCCCEEEEECCeeehHHHHHHHhCCEEEeeCCCEEeccccccCcCCCchHHHHHHHHhCHHHHHHH
Confidence            5666678888999999999999999999999999999999999999999999999999999999999999999 899999


Q ss_pred             hhcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHhCcCCHH
Q 016290          170 ALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKETVA  249 (392)
Q Consensus       170 ~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~e  249 (392)
                      ++||++++++||+++||||++||++++.+.+.                                                
T Consensus       163 ~ltg~~~~a~eA~~~Glv~~vv~~~~~~~~a~------------------------------------------------  194 (260)
T PRK07511        163 LLEGKPISAERLHALGVVNRLAEPGQALAEAL------------------------------------------------  194 (260)
T ss_pred             HHhCCCCCHHHHHHcCCccEeeCchHHHHHHH------------------------------------------------
Confidence            99999999999999999999999887654332                                                


Q ss_pred             HHHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHh
Q 016290          250 EIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGIRALTI  329 (392)
Q Consensus       250 ei~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eGv~a~l~  329 (392)
                                         +.+++|++.||.+++.+|++++.+...++.+++..|...+..++.+   +|+++|+++|+ 
T Consensus       195 -------------------~~a~~l~~~~~~~~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~---~~~~~~i~~f~-  251 (260)
T PRK07511        195 -------------------ALADQLAAGSPNALARIKSLIADAPEATLAAQLEAERDHFVASLHH---ADALEGIAAFL-  251 (260)
T ss_pred             -------------------HHHHHHHhCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcC---chHHHHHHHHh-
Confidence                               2378899999999999999999988889999999999999999999   99999999999 


Q ss_pred             ccCCCCCCC
Q 016290          330 EKDNAPKWD  338 (392)
Q Consensus       330 dK~r~P~w~  338 (392)
                      +| |+|.|.
T Consensus       252 ~~-r~~~~~  259 (260)
T PRK07511        252 EK-RAPDYK  259 (260)
T ss_pred             cc-CCCCCC
Confidence            55 889995

>PRK07659 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=5.5e-54  Score=408.05  Aligned_cols=256  Identities=23%  Similarity=0.339  Sum_probs=231.6

Q ss_pred             CCCCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhH
Q 016290            9 PDEQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSC   88 (392)
Q Consensus         9 ~~~~~V~~~~~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~   88 (392)
                      +++..|.++.+++|++||||||+++|++|.+|+.+|.++++.+ .|+++++|||+|.|++||+|+|++++..... ....
T Consensus         3 ~~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~-~d~~vrvvvl~g~g~~F~aG~Dl~~~~~~~~-~~~~   80 (260)
T PRK07659          3 SKMESVVVKYEGRVATIMLNRPEALNALDEPMLKELLQALKEV-AESSAHIVVLRGNGRGFSAGGDIKMMLSSND-ESKF   80 (260)
T ss_pred             CCCceEEEEeeCCEEEEEeCCcccccCCCHHHHHHHHHHHHHh-cCCCeeEEEEECCCCCcccccCHHHHhhccC-chhH
Confidence            4456799999999999999999999999999999999999999 5889999999999999999999999864221 1223


Q ss_pred             HHHHHHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcch-HHHH
Q 016290           89 LEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HLGE  167 (392)
Q Consensus        89 ~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G-~~a~  167 (392)
                      ..++...++++..|.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++| ..++
T Consensus        81 ~~~~~~~~~~~~~l~~~~~pvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~~~vg~~~a~  160 (260)
T PRK07659         81 DGVMNTISEIVVTLYTMPKLTISAIHGPAAGLGLSIALTADYVIADISAKLAMNFIGIGLIPDGGGHFFLQKRVGENKAK  160 (260)
T ss_pred             HHHHHHHHHHHHHHHhCCCCEEEEecCceecHHHHHHHhCCEEEEcCCCEEcCchhhcCCCCCCchhhhHHHhcCHHHHH
Confidence            456666677888999999999999999999999999999999999999999999999999999999999999999 8999


Q ss_pred             HHhhcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHhCcCC
Q 016290          168 FLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKET  247 (392)
Q Consensus       168 ~L~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~~~  247 (392)
                      +|++||++++|+||+++||||++| ++++.+.+.                                              
T Consensus       161 ~l~ltg~~~~a~eA~~~Glv~~vv-~~~~~~~a~----------------------------------------------  193 (260)
T PRK07659        161 QIIWEGKKLSATEALDLGLIDEVI-GGDFQTAAK----------------------------------------------  193 (260)
T ss_pred             HHHHhCCccCHHHHHHcCChHHHh-hhHHHHHHH----------------------------------------------
Confidence            999999999999999999999999 666654333                                              


Q ss_pred             HHHHHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHcCCccHHHHHHHHH
Q 016290          248 VAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGIRAL  327 (392)
Q Consensus       248 ~eei~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eGv~a~  327 (392)
                                           +++++|++.||.+++.+|++++.....++++.+..|...+..++.+   +|++||+++|
T Consensus       194 ---------------------~~a~~l~~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~---~~~~egi~af  249 (260)
T PRK07659        194 ---------------------QKISEWLQKPLKAMIETKQIYCELNRSQLEQVLQLEKRAQYAMRQT---ADHKEGIRAF  249 (260)
T ss_pred             ---------------------HHHHHHHhCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcC---HhHHHHHHHH
Confidence                                 3378899999999999999999988889999999999999999999   9999999999


Q ss_pred             HhccCCCCCCCC
Q 016290          328 TIEKDNAPKWDP  339 (392)
Q Consensus       328 l~dK~r~P~w~~  339 (392)
                      + +| |+|+|++
T Consensus       250 ~-~k-r~p~~~~  259 (260)
T PRK07659        250 L-EK-RLPVFKG  259 (260)
T ss_pred             h-cC-CCCCCCC
Confidence            9 66 8999975

>PRK07468 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=7.3e-54  Score=407.62  Aligned_cols=256  Identities=20%  Similarity=0.329  Sum_probs=225.3

Q ss_pred             CCcEEEEEe-CCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCC-CchhH
Q 016290           11 EQVVLGEEI-GNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRN-SKDSC   88 (392)
Q Consensus        11 ~~~V~~~~~-~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~-~~~~~   88 (392)
                      ++.|.++++ ++|++||||||+++|+||.+|+.+|.++++.++.|+++++|||+|.|++||+|+|++++..... .....
T Consensus         3 ~~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~   82 (262)
T PRK07468          3 FETIRIAVDARGVATLTLNRPEKHNALSARMIAELTTAARRLAADAAVRVVVLTGAGKSFCAGGDLGWMRAQMTADRATR   82 (262)
T ss_pred             cceEEEEEcCCcEEEEEEcCcccccCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCcccCCcCHHHHHhhcccchhhH
Confidence            456888885 6899999999999999999999999999999999999999999999999999999998753211 11111


Q ss_pred             HHHHHHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcch-HHHH
Q 016290           89 LEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HLGE  167 (392)
Q Consensus        89 ~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G-~~a~  167 (392)
                      ...+.....++..|..+|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++++| +| .+++
T Consensus        83 ~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~a~f~~pe~~~Gl~p~~g~~~~~~~-vG~~~a~  161 (262)
T PRK07468         83 IEEARRLAMMLKALNDLPKPLIGRIQGQAFGGGVGLISVCDVAIAVSGARFGLTETRLGLIPATISPYVVAR-MGEANAR  161 (262)
T ss_pred             HHHHHHHHHHHHHHHcCCCCEEEEECCEEEhHHHHHHHhCCEEEEeCCCEEeCchhccCCCcccchhhHHhh-ccHHHHH
Confidence            223444566788999999999999999999999999999999999999999999999999999999987766 78 9999


Q ss_pred             HHhhcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHhCcCC
Q 016290          168 FLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKET  247 (392)
Q Consensus       168 ~L~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~~~  247 (392)
                      +|++||++++++||+++||||++||.+++.+.+.+                                             
T Consensus       162 ~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~~~~---------------------------------------------  196 (262)
T PRK07468        162 RVFMSARLFDAEEAVRLGLLSRVVPAERLDAAVEA---------------------------------------------  196 (262)
T ss_pred             HHHHhCCccCHHHHHHcCCcceecCHHHHHHHHHH---------------------------------------------
Confidence            99999999999999999999999998776653333                                             


Q ss_pred             HHHHHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHcCCccHHHHHHHHH
Q 016290          248 VAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGIRAL  327 (392)
Q Consensus       248 ~eei~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eGv~a~  327 (392)
                                            ++++|++.||.+++.+|++++......+.+.+..|...+..++.+   +|++||+++|
T Consensus       197 ----------------------~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~s---~d~~e~~~af  251 (262)
T PRK07468        197 ----------------------EVTPYLSCAPGAVAAAKALVRALGAPIDEAVIDATIEALADTWET---EEAREGIAAF  251 (262)
T ss_pred             ----------------------HHHHHHhcCHHHHHHHHHHHHhhhccChHHHHHHHHHHHHHHhcC---HHHHHHHHHH
Confidence                                  378899999999999999999876677899999999999999999   9999999999


Q ss_pred             HhccCCCCCCCC
Q 016290          328 TIEKDNAPKWDP  339 (392)
Q Consensus       328 l~dK~r~P~w~~  339 (392)
                      + +| |+|+|..
T Consensus       252 ~-~k-r~~~~~~  261 (262)
T PRK07468        252 F-DK-RAPAWRG  261 (262)
T ss_pred             H-cC-CCCCCCC
Confidence            9 66 8999964

>PRK09120 p-hydroxycinnamoyl CoA hydratase/lyase; Validated

Probab=100.00  E-value=1.1e-53  Score=408.83  Aligned_cols=252  Identities=23%  Similarity=0.353  Sum_probs=223.0

Q ss_pred             CCCCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCC-Cch-
Q 016290            9 PDEQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRN-SKD-   86 (392)
Q Consensus         9 ~~~~~V~~~~~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~-~~~-   86 (392)
                      ..+..|.++++++|++||||||+++|+||.+|+.+|.++++.++.|++|++|||+|.|++||+|+|++++..... ... 
T Consensus         5 ~~~~~i~~~~~~~va~itlnrp~~~Nal~~~m~~el~~al~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~   84 (275)
T PRK09120          5 NRWDTVKVEVEDGIAWVTLNRPEKRNAMSPTLNREMIDVLDALEFDDDAGVLVLTGAGDAWSAGMDLKEYFRETDAQPEI   84 (275)
T ss_pred             cccccEEEEEECCEEEEEecCcccccCCCHHHHHHHHHHHHHHHhCCCceEEEEEcCCCceecCcCHHHHhhccccchhH
Confidence            346779999999999999999999999999999999999999999999999999999999999999998754211 111 


Q ss_pred             hHHHHHHHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcch-HH
Q 016290           87 SCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HL  165 (392)
Q Consensus        87 ~~~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G-~~  165 (392)
                      ....+....+.++..|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++| ..
T Consensus        85 ~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~  164 (275)
T PRK09120         85 LQERIRREAYGWWRRLRWYQKPTIAMVNGWCFGGGFSPLVACDLAIAADEAQFGLSEINWGIPPGGGVSKAMADTVGHRD  164 (275)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCEEEEEcCEEechhHHHHHhCCEEEEeCCcEecCCccccCCCCCcchHHHHHHHcCHHH
Confidence            11233344566788899999999999999999999999999999999999999999999999999999999999999 99


Q ss_pred             HHHHhhcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHhCc
Q 016290          166 GEFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSK  245 (392)
Q Consensus       166 a~~L~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~  245 (392)
                      +++|++||++++|+||+++||||++||++++.+.+.++                                          
T Consensus       165 a~~llltg~~~~A~eA~~~Glv~~vv~~~~l~~~a~~~------------------------------------------  202 (275)
T PRK09120        165 ALYYIMTGETFTGRKAAEMGLVNESVPLAQLRARTREL------------------------------------------  202 (275)
T ss_pred             HHHHHhcCCccCHHHHHHcCCcceecCHHHHHHHHHHH------------------------------------------
Confidence            99999999999999999999999999998887644433                                          


Q ss_pred             CCHHHHHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHH--HHHHHHcCCcc-HHHH
Q 016290          246 ETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRL--TINILRAIISA-DIYE  322 (392)
Q Consensus       246 ~~~eei~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~--~~~~~~~~~~~-d~~e  322 (392)
                                               +++|++.||.+++.+|++++.....++.+.+..|...  ...++.+   + |++|
T Consensus       203 -------------------------a~~la~~~p~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~---~~d~~e  254 (275)
T PRK09120        203 -------------------------AAKLLEKNPVVLRAAKDGFKRVRELTWDQAEDYLYAKLEQANSLDP---EGGREE  254 (275)
T ss_pred             -------------------------HHHHHhCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCC---HHHHHH
Confidence                                     7899999999999999999998888999999887653  4445777   8 8999


Q ss_pred             HHHHHHhcc
Q 016290          323 GIRALTIEK  331 (392)
Q Consensus       323 Gv~a~l~dK  331 (392)
                      |+++|+ +|
T Consensus       255 g~~afl-~k  262 (275)
T PRK09120        255 GLKQFL-DD  262 (275)
T ss_pred             HHHHHH-hc
Confidence            999999 44

>PRK05674 gamma-carboxygeranoyl-CoA hydratase; Validated

Probab=100.00  E-value=8.8e-54  Score=407.53  Aligned_cols=258  Identities=22%  Similarity=0.327  Sum_probs=224.0

Q ss_pred             CCCCcEEEEEe-CCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCC-Cch
Q 016290            9 PDEQVVLGEEI-GNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRN-SKD   86 (392)
Q Consensus         9 ~~~~~V~~~~~-~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~-~~~   86 (392)
                      +.++.|.++.+ ++|++||||||+++|+||.+|+.+|.++++.++.|++|++|||+|.|++||+|+|++++..... ...
T Consensus         2 ~~~~~l~~~~~~~~v~~itlnrp~~~Nal~~~~~~el~~al~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~   81 (265)
T PRK05674          2 SDFQTIELIRDPRGFATLWLSRADKNNAFNAQMIRELILALDQVQSDASLRFLLLRGRGRHFSAGADLAWMQQSADLDYN   81 (265)
T ss_pred             CCcceEEEEEcCCCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCcccCcCHHHHhhcccccch
Confidence            44778999985 7899999999999999999999999999999999999999999999999999999998753211 000


Q ss_pred             hHHHHHHHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcch-HH
Q 016290           87 SCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HL  165 (392)
Q Consensus        87 ~~~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G-~~  165 (392)
                      .........+++...|.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|+++ |+|++| .+
T Consensus        82 ~~~~~~~~~~~~~~~l~~~~kPvIaaV~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gi~p~~~~~~-l~~~vG~~~  160 (265)
T PRK05674         82 TNLDDARELAELMYNLYRLKIPTLAVVQGAAFGGALGLISCCDMAIGADDAQFCLSEVRIGLAPAVISPF-VVKAIGERA  160 (265)
T ss_pred             hhhHHHHHHHHHHHHHHcCCCCEEEEEcCEEEechhhHhhhcCEEEEeCCCEEeCcccccCCCcchhHHH-HHHHhCHHH
Confidence            1112233446788889999999999999999999999999999999999999999999999999987764 888899 99


Q ss_pred             HHHHhhcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHhCc
Q 016290          166 GEFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSK  245 (392)
Q Consensus       166 a~~L~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~  245 (392)
                      +++|+|||++++|+||+++|||+++||.+++.+.+.+                                           
T Consensus       161 a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~-------------------------------------------  197 (265)
T PRK05674        161 ARRYALTAERFDGRRARELGLLAESYPAAELEAQVEA-------------------------------------------  197 (265)
T ss_pred             HHHHHHhCcccCHHHHHHCCCcceecCHHHHHHHHHH-------------------------------------------
Confidence            9999999999999999999999999998777654333                                           


Q ss_pred             CCHHHHHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHH-HHHHHHHHHHcCCccHHHHHH
Q 016290          246 ETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKK-EFRLTINILRAIISADIYEGI  324 (392)
Q Consensus       246 ~~~eei~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~-E~~~~~~~~~~~~~~d~~eGv  324 (392)
                                              .+++|++.||.+++.+|++++.....++.+.+.. +...+..++.+   +|++||+
T Consensus       198 ------------------------~a~~la~~~p~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~s---~d~~e~~  250 (265)
T PRK05674        198 ------------------------WIANLLLNSPQALRASKDLLREVGDGELSPALRRYCENAIARIRVS---AEGQEGL  250 (265)
T ss_pred             ------------------------HHHHHHhcCHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHhcC---HHHHHHH
Confidence                                    3789999999999999999999888889888875 44567777888   9999999


Q ss_pred             HHHHhccCCCCCCCC
Q 016290          325 RALTIEKDNAPKWDP  339 (392)
Q Consensus       325 ~a~l~dK~r~P~w~~  339 (392)
                      ++|+ +| |+|+|..
T Consensus       251 ~af~-~k-r~p~~~~  263 (265)
T PRK05674        251 RAFL-EK-RTPAWQT  263 (265)
T ss_pred             HHHH-cc-CCCCCCC
Confidence            9999 56 8999974

>COG1024 CaiD Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]

Probab=100.00  E-value=1.4e-53  Score=404.74  Aligned_cols=253  Identities=30%  Similarity=0.447  Sum_probs=227.4

Q ss_pred             CCCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhHH
Q 016290           10 DEQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCL   89 (392)
Q Consensus        10 ~~~~V~~~~~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~   89 (392)
                      .+..|.++..++|++||||||+++|+||.+|+.+|.++++.++.|++|++|||||+|++||+|+||+.+.. ........
T Consensus         3 ~~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vvltg~g~~FsaG~Dl~~~~~-~~~~~~~~   81 (257)
T COG1024           3 TYETILVEREDGIAVITLNRPEKLNALNLEMLDELAEALDEAEADPDVRVVVLTGAGKAFSAGADLKELLS-PEDGNAAE   81 (257)
T ss_pred             CCCeeEEEeeCCEEEEEecCcccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCceecccCHHHHhc-ccchhHHH
Confidence            45678999999999999999999999999999999999999999999999999999999999999999875 11111113


Q ss_pred             HHHHHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcch-HHHHH
Q 016290           90 EVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HLGEF  168 (392)
Q Consensus        90 ~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G-~~a~~  168 (392)
                      .++...+.++..|.+++|||||+|||+|+|||++|+++||+|||+++++|++||+++|++|+.|++++|+|++| ..+.+
T Consensus        82 ~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~eLal~~D~ria~~~a~f~~pe~~iGl~Pg~g~~~~l~r~~G~~~a~~  161 (257)
T COG1024          82 NLMQPGQDLLRALADLPKPVIAAVNGYALGGGLELALACDIRIAAEDAKFGLPEVNLGLLPGDGGTQRLPRLLGRGRAKE  161 (257)
T ss_pred             HHHhHHHHHHHHHHhCCCCEEEEEcceEeechhhhhhcCCeEEecCCcEecCcccccccCCCCcHHHHHHHhcCHHHHHH
Confidence            67777788999999999999999999999999999999999999999999999999999998899999999999 89999


Q ss_pred             HhhcCCcccHHHHHHcCccceecCC-CChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHhCcCC
Q 016290          169 LALTGARLNGKELVAAGLATHFVPS-EKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKET  247 (392)
Q Consensus       169 L~ltG~~l~a~eA~~~GLv~~vv~~-~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~~~  247 (392)
                      |++||+.++++||+++|||+++|+. +++.+.+.++                                            
T Consensus       162 l~ltg~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~--------------------------------------------  197 (257)
T COG1024         162 LLLTGEPISAAEALELGLVDEVVPDAEELLERALEL--------------------------------------------  197 (257)
T ss_pred             HHHcCCcCCHHHHHHcCCcCeeeCCHHHHHHHHHHH--------------------------------------------
Confidence            9999999999999999999999985 4665543333                                            


Q ss_pred             HHHHHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHcCCccHHHHHHHHH
Q 016290          248 VAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGIRAL  327 (392)
Q Consensus       248 ~eei~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eGv~a~  327 (392)
                                             +++++. +|.++..+|+.++.....++++.+..|...+...+.+   +|++||+++|
T Consensus       198 -----------------------a~~~a~-~~~a~~~~k~~~~~~~~~~l~~~~~~~~~~~~~~~~~---~d~~eg~~a~  250 (257)
T COG1024         198 -----------------------ARRLAA-PPLALAATKRLVRAALEADLAEALEAEALAFARLFSS---EDFREGVRAF  250 (257)
T ss_pred             -----------------------HHHHcc-CHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHhcC---hhHHHHHHHH
Confidence                                   555555 9999999999999997777999999999999887788   9999999999


Q ss_pred             HhccCCCCCC
Q 016290          328 TIEKDNAPKW  337 (392)
Q Consensus       328 l~dK~r~P~w  337 (392)
                      + +  |+|.|
T Consensus       251 ~-~--r~p~~  257 (257)
T COG1024         251 L-E--RKPVF  257 (257)
T ss_pred             H-c--cCCCC
Confidence            9 3  88988

>PRK06495 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.2e-53  Score=404.94  Aligned_cols=254  Identities=25%  Similarity=0.337  Sum_probs=227.0

Q ss_pred             CCCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhHH
Q 016290           10 DEQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCL   89 (392)
Q Consensus        10 ~~~~V~~~~~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~   89 (392)
                      +++.|.++++++|++||||||+ .|+||.+|+.+|.++++.++.|+++++|||+|.|++||+|+|++++...........
T Consensus         2 ~~~~i~~~~~~~v~~itlnrp~-~Nal~~~~~~~l~~al~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~   80 (257)
T PRK06495          2 MMSQLKLEVSDHVAVVTLDNPP-VNALSRELRDELIAVFDEISERPDVRVVVLTGAGKVFCAGADLKGRPDVIKGPGDLR   80 (257)
T ss_pred             CcceEEEEeeCCEEEEEECCCc-cccCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCcccCcCHHhHhhccCCchhHH
Confidence            4567899999999999999998 599999999999999999999999999999999999999999998754211112223


Q ss_pred             HHHHHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcch-HHHHH
Q 016290           90 EVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HLGEF  168 (392)
Q Consensus        90 ~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G-~~a~~  168 (392)
                      .+....+++...|.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++   |++++|+|++| ..+.+
T Consensus        81 ~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~---~~~~~l~~~~g~~~a~~  157 (257)
T PRK06495         81 AHNRRTRECFHAIRECAKPVIAAVNGPALGAGLGLVASCDIIVASENAVFGLPEIDVGLA---GGGKHAMRLFGHSLTRR  157 (257)
T ss_pred             HHHHHHHHHHHHHHhCCCCEEEEECCeeehhHHHHHHhCCEEEecCCCEeeChhhccCcc---ccHHHHHHHhCHHHHHH
Confidence            344455678888999999999999999999999999999999999999999999999996   56788999999 99999


Q ss_pred             HhhcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHhCcCCH
Q 016290          169 LALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKETV  248 (392)
Q Consensus       169 L~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~  248 (392)
                      |++||++++|+||+++||||++||++++.+.+.+                                              
T Consensus       158 lll~g~~~~a~eA~~~GLv~~vv~~~~~~~~a~~----------------------------------------------  191 (257)
T PRK06495        158 MMLTGYRVPAAELYRRGVIEACLPPEELMPEAME----------------------------------------------  191 (257)
T ss_pred             HHHcCCeeCHHHHHHcCCcceecCHHHHHHHHHH----------------------------------------------
Confidence            9999999999999999999999998887654333                                              


Q ss_pred             HHHHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHH
Q 016290          249 AEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGIRALT  328 (392)
Q Consensus       249 eei~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eGv~a~l  328 (392)
                                           ++++|++.||.+++.+|++++.....++.++++.|...+..++.+   +|++||+++|+
T Consensus       192 ---------------------~a~~l~~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s---~d~~egi~af~  247 (257)
T PRK06495        192 ---------------------IAREIASKSPLATRLAKDALNTIENMSLRDGYRYEQDITAKLAKT---EDAKEAQRAFL  247 (257)
T ss_pred             ---------------------HHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcC---hHHHHHHHHHh
Confidence                                 378999999999999999999988889999999999999999999   99999999999


Q ss_pred             hccCCCCCCCC
Q 016290          329 IEKDNAPKWDP  339 (392)
Q Consensus       329 ~dK~r~P~w~~  339 (392)
                       +| |+|+|+.
T Consensus       248 -~k-r~p~~~~  256 (257)
T PRK06495        248 -EK-RPPVFKG  256 (257)
T ss_pred             -cc-CCCCCCC
Confidence             56 8999975

>PRK06688 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.4e-53  Score=405.15  Aligned_cols=255  Identities=29%  Similarity=0.387  Sum_probs=232.4

Q ss_pred             CCCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhHH
Q 016290           10 DEQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCL   89 (392)
Q Consensus        10 ~~~~V~~~~~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~   89 (392)
                      ....|.++++++|++|+||||++.|+||.+|+.+|.++++.++.|+++++|||+|.|++||+|+|++++..... ..  .
T Consensus         3 ~~~~i~~~~~~~v~~i~lnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~-~~--~   79 (259)
T PRK06688          3 MVTDLLVELEDGVLTITINRPDKKNALTAAMYQALADALEAAATDPAVRVVVLTGAGRAFSAGGDIKDFPKAPP-KP--P   79 (259)
T ss_pred             CCCceEEEEECCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCccCccCHHHHhccCc-ch--H
Confidence            44568999999999999999999999999999999999999999999999999999999999999999865322 11  3


Q ss_pred             HHHHHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcch-HHHHH
Q 016290           90 EVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HLGEF  168 (392)
Q Consensus        90 ~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G-~~a~~  168 (392)
                      .++...++++..|.++|||+||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|+|++| ..+.+
T Consensus        80 ~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~~G~~~a~~  159 (259)
T PRK06688         80 DELAPVNRFLRAIAALPKPVVAAVNGPAVGVGVSLALACDLVYASESAKFSLPFAKLGLCPDAGGSALLPRLIGRARAAE  159 (259)
T ss_pred             HHHHHHHHHHHHHHcCCCCEEEEECCeeecHHHHHHHhCCEEEecCCCEecCchhhcCCCCCcchhhHHHHHhhHHHHHH
Confidence            34555567888999999999999999999999999999999999999999999999999999999999999999 89999


Q ss_pred             HhhcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHhCcCCH
Q 016290          169 LALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKETV  248 (392)
Q Consensus       169 L~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~  248 (392)
                      |++||++++++||+++||||+++|++++.+.+.                                               
T Consensus       160 l~l~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~-----------------------------------------------  192 (259)
T PRK06688        160 MLLLGEPLSAEEALRIGLVNRVVPAAELDAEAD-----------------------------------------------  192 (259)
T ss_pred             HHHhCCccCHHHHHHcCCcceecCHHHHHHHHH-----------------------------------------------
Confidence            999999999999999999999999877665333                                               


Q ss_pred             HHHHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHH
Q 016290          249 AEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGIRALT  328 (392)
Q Consensus       249 eei~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eGv~a~l  328 (392)
                                          +++++|++.||.+++.+|+++++....++++++..|...+..++.+   +|+++|+++|+
T Consensus       193 --------------------~~a~~i~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~---~~~~~~~~af~  249 (259)
T PRK06688        193 --------------------AQAAKLAAGPASALRYTKRAINAATLTELEEALAREAAGFGRLLRT---PDFREGATAFI  249 (259)
T ss_pred             --------------------HHHHHHHhCCHHHHHHHHHHHHhhhhCCHHHHHHHHHHHHHHHhCC---HHHHHHHHHHH
Confidence                                3378899999999999999999988889999999999999999999   99999999999


Q ss_pred             hccCCCCCCCC
Q 016290          329 IEKDNAPKWDP  339 (392)
Q Consensus       329 ~dK~r~P~w~~  339 (392)
                       +| |+|+|+.
T Consensus       250 -~~-~~p~~~~  258 (259)
T PRK06688        250 -EK-RKPDFTG  258 (259)
T ss_pred             -cC-CCCCCCC
Confidence             56 8999974

>PRK07327 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=2.3e-53  Score=405.45  Aligned_cols=256  Identities=22%  Similarity=0.294  Sum_probs=221.9

Q ss_pred             CCCCCcEEEEE-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCch
Q 016290            8 NPDEQVVLGEE-IGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKD   86 (392)
Q Consensus         8 ~~~~~~V~~~~-~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~   86 (392)
                      ...+..|.+++ +++|++||||||+++|+||.+|+.+|.++|+.++.|++|++|||||.|++||+|+|++++........
T Consensus         7 ~~~~~~i~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~   86 (268)
T PRK07327          7 YADYPALRFDRPPPGVLEIVLNGPGALNAADARMHRELADIWRDVDRDPDVRVVLIRGEGKAFSAGGDLALVEEMADDFE   86 (268)
T ss_pred             CCCCCeEEEEecCCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHhhhCCCceEEEEECCCCCcccccCHHHHhhccCcHH
Confidence            44567799998 58999999999999999999999999999999999999999999999999999999998754222112


Q ss_pred             hHHHHHHHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcch-HH
Q 016290           87 SCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HL  165 (392)
Q Consensus        87 ~~~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G-~~  165 (392)
                      ....++...+.++..|.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++| .+
T Consensus        87 ~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~  166 (268)
T PRK07327         87 VRARVWREARDLVYNVINCDKPIVSAIHGPAVGAGLVAALLADISIAAKDARIIDGHTRLGVAAGDHAAIVWPLLCGMAK  166 (268)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCCEEEEEcCeeeehhhHHHHhCCEEEecCCCEEeCcccccCCCCCcchhhHHHHHhCHHH
Confidence            12345555567888999999999999999999999999999999999999999999999999999999999999999 99


Q ss_pred             HHHHhhcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHhCc
Q 016290          166 GEFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSK  245 (392)
Q Consensus       166 a~~L~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~  245 (392)
                      +++|+|||++++|+||+++|||+++||++++.+.+.+                                           
T Consensus       167 a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~-------------------------------------------  203 (268)
T PRK07327        167 AKYYLLLCEPVSGEEAERIGLVSLAVDDDELLPKALE-------------------------------------------  203 (268)
T ss_pred             HHHHHHcCCccCHHHHHHcCCcceecCHHHHHHHHHH-------------------------------------------
Confidence            9999999999999999999999999998877654433                                           


Q ss_pred             CCHHHHHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhh---cCHHHHHHHHHHHHHHHHHcCCccHHHH
Q 016290          246 ETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGRE---QSLAECLKKEFRLTINILRAIISADIYE  322 (392)
Q Consensus       246 ~~~eei~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~---~~l~~~l~~E~~~~~~~~~~~~~~d~~e  322 (392)
                                              ++++|++.||.+++.+|++++....   ..+++.+..|.    .++.+   +|++|
T Consensus       204 ------------------------~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~----~~~~~---~d~~e  252 (268)
T PRK07327        204 ------------------------VAERLAAGSQTAIRWTKYALNNWLRMAGPTFDTSLALEF----MGFSG---PDVRE  252 (268)
T ss_pred             ------------------------HHHHHHcCCHHHHHHHHHHHHHhhhhhhhhHHHHHHHHH----HHccC---hhHHH
Confidence                                    3789999999999999999996532   24555555442    35667   99999


Q ss_pred             HHHHHHhccCCCCCCCC
Q 016290          323 GIRALTIEKDNAPKWDP  339 (392)
Q Consensus       323 Gv~a~l~dK~r~P~w~~  339 (392)
                      |+++|+ +| |+|+|++
T Consensus       253 g~~af~-ek-r~p~~~~  267 (268)
T PRK07327        253 GLASLR-EK-RAPDFPG  267 (268)
T ss_pred             HHHHHH-hc-CCCCCCC
Confidence            999999 66 8999975

>PRK05864 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=2.1e-53  Score=407.31  Aligned_cols=260  Identities=24%  Similarity=0.341  Sum_probs=223.8

Q ss_pred             CCCCcEEEEE-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCC----
Q 016290            9 PDEQVVLGEE-IGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRN----   83 (392)
Q Consensus         9 ~~~~~V~~~~-~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~----   83 (392)
                      ++++.|.++. +++|++||||||+++|+||.+|+.+|.++++.++.|++|++|||+|.|++||+|+|++++.....    
T Consensus         6 ~~~~~v~~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~vrvvVl~g~g~~FcaG~Dl~~~~~~~~~~~~   85 (276)
T PRK05864          6 STMSLVLVDHPRPEIALITLNRPERMNSMAFDVMVPLKEALAEVSYDNSVRVVVLTGAGRGFSSGADHKSAGVVPHVEGL   85 (276)
T ss_pred             CCCCceEEeeecCCEEEEEecCCccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCeecCcchhhhhcccccccc
Confidence            3445688887 78999999999999999999999999999999999999999999999999999999998743111    


Q ss_pred             -CchhHHHHHHHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccC-CchhHHHHhhc
Q 016290           84 -SKDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHT-DCGFSFIHSRL  161 (392)
Q Consensus        84 -~~~~~~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P-~~G~s~~L~rl  161 (392)
                       .......++....+++..|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++| ++|++++|+|+
T Consensus        86 ~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~~g~~~~l~~~  165 (276)
T PRK05864         86 TRPTYALRSMELLDDVILALRRLHQPVIAAVNGPAIGGGLCLALAADIRVASSSAYFRAAGINNGLTASELGLSYLLPRA  165 (276)
T ss_pred             cchhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehhHHHHHHhCCEEEeeCCCEecCcccccCCCCCCcchheehHhh
Confidence             0111122334455677889999999999999999999999999999999999999999999999997 78999999999


Q ss_pred             ch-HHHHHHhhcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHH
Q 016290          162 PG-HLGEFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIID  240 (392)
Q Consensus       162 ~G-~~a~~L~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~  240 (392)
                      +| ..+++|+|||++++|+||+++|||+++||++++.+.+.+                                      
T Consensus       166 vG~~~A~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~--------------------------------------  207 (276)
T PRK05864        166 IGSSRAFEIMLTGRDVDAEEAERIGLVSRQVPDEQLLDTCYA--------------------------------------  207 (276)
T ss_pred             hCHHHHHHHHHcCCccCHHHHHHcCCcceeeCHHHHHHHHHH--------------------------------------
Confidence            99 899999999999999999999999999998877654333                                      


Q ss_pred             HHhCcCCHHHHHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhc-CHHHHHHHHHHHHH-HHHHcCCcc
Q 016290          241 ECFSKETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQ-SLAECLKKEFRLTI-NILRAIISA  318 (392)
Q Consensus       241 ~~f~~~~~eei~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~-~l~~~l~~E~~~~~-~~~~~~~~~  318 (392)
                                                   .+++|+..||.+++.+|++++..... ++.+.+..|..... ..+.+   +
T Consensus       208 -----------------------------~a~~la~~~p~a~~~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~---~  255 (276)
T PRK05864        208 -----------------------------IAARMAGFSRPGIELTKRTLWSGLDAASLEAHMQAEGLGQLFVRLLT---A  255 (276)
T ss_pred             -----------------------------HHHHHHhCCHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHhccC---h
Confidence                                         37899999999999999999987664 78988888865332 34567   9


Q ss_pred             HHHHHHHHHHhccCCCCCCCCC
Q 016290          319 DIYEGIRALTIEKDNAPKWDPP  340 (392)
Q Consensus       319 d~~eGv~a~l~dK~r~P~w~~~  340 (392)
                      |++||+++|+ +| |+|+|.+.
T Consensus       256 d~~e~~~af~-~k-r~p~~~~~  275 (276)
T PRK05864        256 NFEEAVAARA-EK-RPPVFTDD  275 (276)
T ss_pred             hHHHHHHHHh-cc-CCCCCCCC
Confidence            9999999999 66 89999864

>PRK06210 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.8e-53  Score=407.16  Aligned_cols=259  Identities=25%  Similarity=0.345  Sum_probs=228.1

Q ss_pred             CCCCcEEEEEeC-CEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCch-
Q 016290            9 PDEQVVLGEEIG-NVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKD-   86 (392)
Q Consensus         9 ~~~~~V~~~~~~-~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~-   86 (392)
                      +.++.|.+++++ +|++||||||+++|+||.+|+.+|.++|+.++.|+++++|||+|.|++||+|+|++++........ 
T Consensus         2 ~~~~~i~~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~   81 (272)
T PRK06210          2 MAYDAVLYEVADSGVAVITLNRPDRLNAWTPVMEAEVYAAMDRAEADPAVRVIVLTGAGRGFCAGADMGELQTIDPSDGR   81 (272)
T ss_pred             CCcceEEEEECCCCEEEEEeCCcccccCCCHHHHHHHHHHHHHhccCCCeeEEEEECCCCCcccccCHHHHhccCccccc
Confidence            456779999998 999999999999999999999999999999999999999999999999999999998754211100 


Q ss_pred             ---hHHHHH----HHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHh
Q 016290           87 ---SCLEVV----YRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHS  159 (392)
Q Consensus        87 ---~~~~~~----~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~  159 (392)
                         ....+.    ....+++..|.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~  161 (272)
T PRK06210         82 RDTDVRPFVGNRRPDYQTRYHFLTALRKPVIAAINGACAGIGLTHALMCDVRFAADGAKFTTAFARRGLIAEHGISWILP  161 (272)
T ss_pred             ccccchhhhhhhhhhHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEeCCCEEechHHhcCCCCCCchhhhhH
Confidence               001111    1224456789999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcch-HHHHHHhhcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHH
Q 016290          160 RLPG-HLGEFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSI  238 (392)
Q Consensus       160 rl~G-~~a~~L~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  238 (392)
                      |++| ..+++|+|||++++|+||+++||||++||++++.+.+.                                     
T Consensus       162 ~~ig~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~-------------------------------------  204 (272)
T PRK06210        162 RLVGHANALDLLLSARTFYAEEALRLGLVNRVVPPDELMERTL-------------------------------------  204 (272)
T ss_pred             hhhCHHHHHHHHHcCCccCHHHHHHcCCcceecCHHHHHHHHH-------------------------------------
Confidence            9999 89999999999999999999999999999877654333                                     


Q ss_pred             HHHHhCcCCHHHHHHHHHHhhccCCcccHHHHHHHHhhc-CchHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHcCCc
Q 016290          239 IDECFSKETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKS-SPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIIS  317 (392)
Q Consensus       239 i~~~f~~~~~eei~~~l~~~~~~~~~~~a~~~~~~l~~~-sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~  317 (392)
                                                    +.+++|++. ||.++..+|+++++....++.+.++.|...+..++.+   
T Consensus       205 ------------------------------~~a~~i~~~~~p~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~---  251 (272)
T PRK06210        205 ------------------------------AYAEDLARNVSPASMAVIKRQLYEDAFQTLAEATARANREMHESLQR---  251 (272)
T ss_pred             ------------------------------HHHHHHHhcCCHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHhcC---
Confidence                                          336788875 9999999999999988889999999999999999999   


Q ss_pred             cHHHHHHHHHHhccCCCCCCCC
Q 016290          318 ADIYEGIRALTIEKDNAPKWDP  339 (392)
Q Consensus       318 ~d~~eGv~a~l~dK~r~P~w~~  339 (392)
                      +|++||+++|+ +| |+|.|..
T Consensus       252 ~~~~egi~af~-~k-r~p~~~~  271 (272)
T PRK06210        252 PDFIEGVASFL-EK-RPPRFPG  271 (272)
T ss_pred             ccHHHHHHHHh-cc-CCCCCCC
Confidence            99999999999 66 8999974

>TIGR01929 menB naphthoate synthase (dihydroxynaphthoic acid synthetase)

Probab=100.00  E-value=2.1e-53  Score=403.73  Aligned_cols=254  Identities=21%  Similarity=0.280  Sum_probs=219.9

Q ss_pred             CcEEEEE-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCC-CccccCCCchhhccCCCCchhHH
Q 016290           12 QVVLGEE-IGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVG-RAFSAGGDLKMFYDGRNSKDSCL   89 (392)
Q Consensus        12 ~~V~~~~-~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G-~~FcaG~Dl~~l~~~~~~~~~~~   89 (392)
                      ..|.+++ +++|++||||||+++|+||.+|+.+|.++++.++.|+++++|||||.| ++||+|+|++++...........
T Consensus         2 ~~i~~~~~~~~v~~itlnrp~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~   81 (259)
T TIGR01929         2 TDIRYEKSTDGIAKITINRPQVRNAFRPLTVKEIIQALDDAREDPDIGVVILTGAGDKAFCSGGDQKVRGDYGYIDDSGV   81 (259)
T ss_pred             ceEEEEEcCCCEEEEEecCCccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEEeCCCCceEeCcChHhHhhccccchhhH
Confidence            3578888 899999999999999999999999999999999999999999999999 89999999998643111111101


Q ss_pred             HHHHHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcch-HHHHH
Q 016290           90 EVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HLGEF  168 (392)
Q Consensus        90 ~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G-~~a~~  168 (392)
                      .. .....+...|.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++| .++++
T Consensus        82 ~~-~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~p~~~~~~~l~~~vG~~~a~~  160 (259)
T TIGR01929        82 HR-LNVLDVQRQIRTCPKPVIAMVNGYAIGGGHVLHVVCDLTIAAENARFGQTGPKVGSFDGGYGSSYLARIVGQKKARE  160 (259)
T ss_pred             HH-HHHHHHHHHHHhCCCCEEEEEcCEEehHHHHHHHhCCEEEecCCCEecCcccccccCCCccHHHHHHHHhHHHHHHH
Confidence            11 12345777899999999999999999999999999999999999999999999999999999999999999 99999


Q ss_pred             HhhcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHhCcCCH
Q 016290          169 LALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKETV  248 (392)
Q Consensus       169 L~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~  248 (392)
                      |++||++++|+||+++||||++||++++.+.+.                                               
T Consensus       161 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~-----------------------------------------------  193 (259)
T TIGR01929       161 IWFLCRQYDAEQALDMGLVNTVVPLADLEKETV-----------------------------------------------  193 (259)
T ss_pred             HHHhCCccCHHHHHHcCCcccccCHHHHHHHHH-----------------------------------------------
Confidence            999999999999999999999999877765333                                               


Q ss_pred             HHHHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHH
Q 016290          249 AEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGIRALT  328 (392)
Q Consensus       249 eei~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eGv~a~l  328 (392)
                                          +++++|++.||.+++.+|++++.... .....+..|...+..++.+   +|++||+++|+
T Consensus       194 --------------------~~a~~la~~~~~a~~~~K~~l~~~~~-~~~~~~~~e~~~~~~~~~~---~d~~egi~af~  249 (259)
T TIGR01929       194 --------------------RWCREILQKSPMAIRMLKAALNADCD-GQAGLQELAGNATMLFYMT---EEGQEGRNAFL  249 (259)
T ss_pred             --------------------HHHHHHHhCCHHHHHHHHHHHHhhhc-cchHHHHHHHHHHHHHhcC---ccHHHHHHHHh
Confidence                                33789999999999999999997644 3455566677788888888   99999999999


Q ss_pred             hccCCCCCCCC
Q 016290          329 IEKDNAPKWDP  339 (392)
Q Consensus       329 ~dK~r~P~w~~  339 (392)
                       +| |+|+|+.
T Consensus       250 -~k-r~p~~~~  258 (259)
T TIGR01929       250 -EK-RQPDFSK  258 (259)
T ss_pred             -cc-CCCCCCC
Confidence             66 8999974

This model represents an enzyme, naphthoate synthase (dihydroxynaphthoic acid synthetase), which is involved in the fifth step of the menaquinone biosynthesis pathway. Together with o-succinylbenzoate-CoA ligase (menE: TIGR01923), this enzyme takes 2-succinylbenzoate and converts it into 1,4-di-hydroxy-2-naphthoate. Included above the trusted cutoff are two enzymes from Arabadopsis thaliana and one from Staphylococcus aureus which are identified as putative enoyl-CoA hydratase/isomerases. These enzymes group with the naphthoate synthases when building a tree and when doing BLAST searches.

>KOG1680 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]

Probab=100.00  E-value=6.4e-54  Score=393.90  Aligned_cols=250  Identities=28%  Similarity=0.380  Sum_probs=224.3

Q ss_pred             EEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhHHHHHH
Q 016290           14 VLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVY   93 (392)
Q Consensus        14 V~~~~~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~~~~~   93 (392)
                      ++...+++|+.||||||+++|||+..|+.+|.+++..+++|+.+.++||||.|++||+|+|++++......+.. ...| 
T Consensus        39 ~~~~~d~~I~lItlNRP~~~Nal~~~~m~eL~~A~~~~e~D~s~~viVltG~gksFcsG~Dl~e~~~~~~~~~~-~~~~-  116 (290)
T KOG1680|consen   39 ELVGEDNGIALITLNRPKALNALCRATMLELAEAFKDFESDDSVGVIVLTGSGKSFCSGADLKEMKKDEFQDVS-DGIF-  116 (290)
T ss_pred             EEeecCCCeEEEEeCChHHhccccHHHHHHHHHHHHHhhccCcccEEEEEcCCCccccccCHHHHhhccccccc-cccc-
Confidence            45566889999999999999999999999999999999999999999999999999999999998763221111 2222 


Q ss_pred             HHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcch-HHHHHHhhc
Q 016290           94 RMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HLGEFLALT  172 (392)
Q Consensus        94 ~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G-~~a~~L~lt  172 (392)
                        .+....+.+.+||+||++||+|+|||++|++.||+|||+++++|++|+.++|++|.+|||.+|+|.+| .+|+++++|
T Consensus       117 --~~~~~~~~~~~KPvIaainG~AlgGG~ELalmCDirva~~~Akfg~~~~~~Gi~p~~GGT~rl~r~vG~s~Ale~~lt  194 (290)
T KOG1680|consen  117 --LRVWDLVSRLKKPVIAAINGFALGGGLELALMCDIRVAGEGAKFGFFEIRMGIIPSWGGTQRLPRIVGKSRALEMILT  194 (290)
T ss_pred             --cchhhhhhhcccceeEeeeceeeccchhhhhhcceEeccCCCeecccccccCCccCCCchhhHHHHhChHHHHHHHHh
Confidence              12333445899999999999999999999999999999999999999999999999999999999999 999999999


Q ss_pred             CCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHhCcCCHHHHH
Q 016290          173 GARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKETVAEII  252 (392)
Q Consensus       173 G~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~eei~  252 (392)
                      |++++++||.++|||++|||++++...+.                                                   
T Consensus       195 g~~~~AqeA~~~GlVn~Vvp~~~~l~eAv---------------------------------------------------  223 (290)
T KOG1680|consen  195 GRRLGAQEAKKIGLVNKVVPSGDALGEAV---------------------------------------------------  223 (290)
T ss_pred             cCcccHHHHHhCCceeEeecchhHHHHHH---------------------------------------------------
Confidence            99999999999999999999998654333                                                   


Q ss_pred             HHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHhccC
Q 016290          253 KSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGIRALTIEKD  332 (392)
Q Consensus       253 ~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eGv~a~l~dK~  332 (392)
                                      +++++|++.||..++..|+.++.+.+.++.+++..|..++...+..   +|.+|||.+|. +| 
T Consensus       224 ----------------~l~~~Ia~~~~~~v~~~K~svn~~~e~~l~e~l~~e~~~~~s~~~~---~d~~Eg~~~f~-~k-  282 (290)
T KOG1680|consen  224 ----------------KLAEQIAKNSPLVVRADKESVNAAYETTLFEGLELERDLFGSTFAT---EDRLEGMTAFA-EK-  282 (290)
T ss_pred             ----------------HHHHHHHhCCHHHHHHHHHHHHHHhhccHHHHHHhhhhhhhhhhhh---HHHHHHHHHhc-cc-
Confidence                            3478999999999999999999999999999999999999999999   99999999997 66 


Q ss_pred             CCCCCCC
Q 016290          333 NAPKWDP  339 (392)
Q Consensus       333 r~P~w~~  339 (392)
                      |+|+|+.
T Consensus       283 r~~~~~k  289 (290)
T KOG1680|consen  283 RKPKFSK  289 (290)
T ss_pred             CCccccc
Confidence            9999974

>PRK03580 carnitinyl-CoA dehydratase; Provisional

Probab=100.00  E-value=4.1e-53  Score=402.24  Aligned_cols=251  Identities=26%  Similarity=0.408  Sum_probs=223.5

Q ss_pred             cEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCC-CccccCCCchhhccCCCCchhHHHH
Q 016290           13 VVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVG-RAFSAGGDLKMFYDGRNSKDSCLEV   91 (392)
Q Consensus        13 ~V~~~~~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G-~~FcaG~Dl~~l~~~~~~~~~~~~~   91 (392)
                      .|.++++++|++||||||+ .|+||.+|+.+|.++++.++.|++|++|||||.| ++||+|+|++++...... .  ..+
T Consensus         4 ~i~~~~~~~v~~itlnrp~-~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~~F~aG~Dl~~~~~~~~~-~--~~~   79 (261)
T PRK03580          4 SLHTTRNGSILEITLDRPK-ANAIDAKTSFAMGEVFLNFRDDPELRVAIITGAGEKFFSAGWDLKAAAEGEAP-D--ADF   79 (261)
T ss_pred             eEEEEEECCEEEEEECCcc-ccCCCHHHHHHHHHHHHHHHhCCCcEEEEEEeCCCCceecccCHHHHhccCcc-h--hhh
Confidence            5889999999999999996 5999999999999999999999999999999999 899999999987642211 1  122


Q ss_pred             HHHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcch-HHHHHHh
Q 016290           92 VYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HLGEFLA  170 (392)
Q Consensus        92 ~~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G-~~a~~L~  170 (392)
                      ....+.++..|.++|||+||+|||+|+|||++|+++|||||++++++|++||+++|++|++|++++|+|++| ..+.+|+
T Consensus        80 ~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~vg~~~a~~l~  159 (261)
T PRK03580         80 GPGGFAGLTEIFDLDKPVIAAVNGYAFGGGFELALAADFIVCADNASFALPEAKLGIVPDSGGVLRLPKRLPPAIANEMV  159 (261)
T ss_pred             hhhhhHHHHHHHhCCCCEEEEECCeeehHHHHHHHHCCEEEecCCCEEeCcccccCcCCCccHHHHHHHHhCHHHHHHHH
Confidence            222345667889999999999999999999999999999999999999999999999999999999999999 8999999


Q ss_pred             hcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHhCcCCHHH
Q 016290          171 LTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKETVAE  250 (392)
Q Consensus       171 ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~ee  250 (392)
                      +||++++|+||+++|||+++||++++.+.+.++                                               
T Consensus       160 l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~-----------------------------------------------  192 (261)
T PRK03580        160 MTGRRMDAEEALRWGIVNRVVPQAELMDRAREL-----------------------------------------------  192 (261)
T ss_pred             HhCCccCHHHHHHcCCCcEecCHhHHHHHHHHH-----------------------------------------------
Confidence            999999999999999999999988877644433                                               


Q ss_pred             HHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHH----HHHHHHHcCCccHHHHHHHH
Q 016290          251 IIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFR----LTINILRAIISADIYEGIRA  326 (392)
Q Consensus       251 i~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~----~~~~~~~~~~~~d~~eGv~a  326 (392)
                                          +++|++.+|.+++.+|++++.....++.++++.|..    .+..++.+   +|++||+++
T Consensus       193 --------------------a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~---~d~~e~~~a  249 (261)
T PRK03580        193 --------------------AQQLVNSAPLAIAALKEIYRETSEMPVEEAYRYIRSGVLKHYPSVLHS---EDALEGPRA  249 (261)
T ss_pred             --------------------HHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHhhhHHHHHHHhcC---ccHHHHHHH
Confidence                                788999999999999999998888899999998864    66778888   999999999


Q ss_pred             HHhccCCCCCCCC
Q 016290          327 LTIEKDNAPKWDP  339 (392)
Q Consensus       327 ~l~dK~r~P~w~~  339 (392)
                      |+ +| |+|+|+.
T Consensus       250 f~-ek-r~~~~~~  260 (261)
T PRK03580        250 FA-EK-RDPVWKG  260 (261)
T ss_pred             Hh-cC-CCCCCCC
Confidence            99 66 8999975

>PRK06144 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=3.8e-53  Score=402.60  Aligned_cols=256  Identities=24%  Similarity=0.321  Sum_probs=224.7

Q ss_pred             CCCCCCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCC-CccccCCCchhhccCCCCc
Q 016290            7 KNPDEQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVG-RAFSAGGDLKMFYDGRNSK   85 (392)
Q Consensus         7 ~~~~~~~V~~~~~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G-~~FcaG~Dl~~l~~~~~~~   85 (392)
                      ++...+.|.++.+++|++||||||+++|+||.+|+.+|.++++.++.|++|++|||+|+| ++||+|+|++++..... .
T Consensus         3 ~~~~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVltg~g~~~F~aG~Dl~~~~~~~~-~   81 (262)
T PRK06144          3 MTTSTDELLLEVRGGIARITFNRPAARNAMTWAMYEGLAEICEAIAADPSIRAVVLRGAGDKAFVAGTDIAQFRAFST-A   81 (262)
T ss_pred             cccCCCceEEEeeCCEEEEEecCCcccCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCceecCcCHHHHhhccc-h
Confidence            455667899999999999999999999999999999999999999999999999999999 89999999998754221 1


Q ss_pred             hhHHHHHHHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccc-cCccCCchhHHHHhhcch-
Q 016290           86 DSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEAS-IGFHTDCGFSFIHSRLPG-  163 (392)
Q Consensus        86 ~~~~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~-iGl~P~~G~s~~L~rl~G-  163 (392)
                      .....+.....+++..|.++|||+||+|||+|+|||++|+++||||||+++++|++||++ +|++|++|++++|+|++| 
T Consensus        82 ~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~~G~~p~~g~~~~l~~~vG~  161 (262)
T PRK06144         82 EDAVAYERRIDRVLGALEQLRVPTIAAIAGACVGGGAAIAAACDLRIATPSARFGFPIARTLGNCLSMSNLARLVALLGA  161 (262)
T ss_pred             hHHHHHHHHHHHHHHHHHhCCCCEEEEECCeeeehHHHHHHhCCEEEecCCCEeechhHHhccCCCCccHHHHHHHHhCH
Confidence            111334444567788899999999999999999999999999999999999999999996 999999999999999999 


Q ss_pred             HHHHHHhhcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHh
Q 016290          164 HLGEFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECF  243 (392)
Q Consensus       164 ~~a~~L~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f  243 (392)
                      ..+++|++||++++|+||+++||||++||++++.+.+.                                          
T Consensus       162 ~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~------------------------------------------  199 (262)
T PRK06144        162 ARVKDMLFTARLLEAEEALAAGLVNEVVEDAALDARAD------------------------------------------  199 (262)
T ss_pred             HHHHHHHHcCCCcCHHHHHHcCCcCeecCHHHHHHHHH------------------------------------------
Confidence            99999999999999999999999999999887765433                                          


Q ss_pred             CcCCHHHHHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHcCCccHHHHH
Q 016290          244 SKETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEG  323 (392)
Q Consensus       244 ~~~~~eei~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eG  323 (392)
                                               +++++|++.||.+++.+|+.++......+    ..+.+.+..++.+   +|++||
T Consensus       200 -------------------------~~a~~i~~~~~~a~~~~K~~l~~~~~~~l----~~~~~~~~~~~~~---~~~~e~  247 (262)
T PRK06144        200 -------------------------ALAELLAAHAPLTLRATKEALRRLRREGL----PDGDDLIRMCYMS---EDFREG  247 (262)
T ss_pred             -------------------------HHHHHHHhCCHHHHHHHHHHHHHhhhcCH----HHHHHHHHHHhcC---hHHHHH
Confidence                                     33789999999999999999998755544    4445677778888   999999


Q ss_pred             HHHHHhccCCCCCCCC
Q 016290          324 IRALTIEKDNAPKWDP  339 (392)
Q Consensus       324 v~a~l~dK~r~P~w~~  339 (392)
                      +++|+ +| |+|+|.+
T Consensus       248 ~~af~-~k-r~p~~~~  261 (262)
T PRK06144        248 VEAFL-EK-RPPKWKG  261 (262)
T ss_pred             HHHHh-cC-CCCCCCC
Confidence            99999 66 8999975

>TIGR03210 badI 2-ketocyclohexanecarboxyl-CoA hydrolase

Probab=100.00  E-value=3.2e-53  Score=401.81  Aligned_cols=251  Identities=22%  Similarity=0.310  Sum_probs=216.8

Q ss_pred             CcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCC-CccccCCCchhhccCCCCchhHHH
Q 016290           12 QVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVG-RAFSAGGDLKMFYDGRNSKDSCLE   90 (392)
Q Consensus        12 ~~V~~~~~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G-~~FcaG~Dl~~l~~~~~~~~~~~~   90 (392)
                      +.|.++++++|++||||||+++|+||.+|+.+|.++|+.++.|++|++|||+|.| ++||+|+|++++..... ..  ..
T Consensus         2 ~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVl~g~g~~~F~aG~Dl~~~~~~~~-~~--~~   78 (256)
T TIGR03210         2 EDILYEKRNGIAWIMINRPAKMNAFRGQTCDELIHALKDAGYDRQIGVIVLAGAGDKAFCTGGDQSTHDGGYD-GR--GT   78 (256)
T ss_pred             CceEEEeeCCEEEEEEcCCccccCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCceecCcChHHHhcccc-ch--hH
Confidence            4688999999999999999999999999999999999999999999999999999 89999999998743211 11  11


Q ss_pred             HHHHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcch-HHHHHH
Q 016290           91 VVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HLGEFL  169 (392)
Q Consensus        91 ~~~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G-~~a~~L  169 (392)
                      +......++..|.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|+.|++++|+|++| ..+++|
T Consensus        79 ~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~G~~~~~~~~~~l~~~vG~~~A~~l  158 (256)
T TIGR03210        79 IGLPMEELHSAIRDVPKPVIARVQGYAIGGGNVLVTICDLTIASEKAQFGQVGPKVGSVDPGYGTALLARVVGEKKAREI  158 (256)
T ss_pred             HHHHHHHHHHHHHhCCCCEEEEECCEEehhhHHHHHhCCEEEEeCCCEEecccccccccCCccHHHHHHHHhCHHHHHHH
Confidence            2223456788899999999999999999999999999999999999999999999999988888999999999 999999


Q ss_pred             hhcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHhCcCCHH
Q 016290          170 ALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKETVA  249 (392)
Q Consensus       170 ~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~e  249 (392)
                      ++||++++|+||+++||||++||++++.+.+.+                                               
T Consensus       159 ll~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~-----------------------------------------------  191 (256)
T TIGR03210       159 WYLCRRYTAQEALAMGLVNAVVPHDQLDAEVQK-----------------------------------------------  191 (256)
T ss_pred             HHhCCCcCHHHHHHcCCceeeeCHHHHHHHHHH-----------------------------------------------
Confidence            999999999999999999999998877654433                                               


Q ss_pred             HHHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCH-HHHHHHHHHHHHHHHHcCCccHHHHHHHHHH
Q 016290          250 EIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSL-AECLKKEFRLTINILRAIISADIYEGIRALT  328 (392)
Q Consensus       250 ei~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l-~~~l~~E~~~~~~~~~~~~~~d~~eGv~a~l  328 (392)
                                          ++++|++.||.+++.+|++++....... .+.  .|...+..++.+   +|++||+++|+
T Consensus       192 --------------------~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~--~~~~~~~~~~~~---~d~~e~~~af~  246 (256)
T TIGR03210       192 --------------------WCDEIVEKSPTAIAIAKRSFNMDTAHQRGIAG--MGMYALKLYYDT---AESREGVKAFQ  246 (256)
T ss_pred             --------------------HHHHHHhCCHHHHHHHHHHHHHhhcccchHHH--HHHHHHHHHccC---hhHHHHHHHHh
Confidence                                3789999999999999999997654321 112  244566677788   99999999999


Q ss_pred             hccCCCCCCCC
Q 016290          329 IEKDNAPKWDP  339 (392)
Q Consensus       329 ~dK~r~P~w~~  339 (392)
                       +| |+|+|++
T Consensus       247 -~k-r~p~~~~  255 (256)
T TIGR03210       247 -EK-RKPEFRK  255 (256)
T ss_pred             -cc-CCCCCCC
Confidence             66 8999974

Members of this protein family are 2-ketocyclohexanecarboxyl-CoA hydrolase, a ring-opening enzyme that acts in catabolism of molecules such as benzoyl-CoA and cyclohexane carboxylate. It converts -ketocyclohexanecarboxyl-CoA to pimelyl-CoA. It is not sensitive to oxygen.

>PRK06143 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=5.2e-53  Score=400.33  Aligned_cols=249  Identities=21%  Similarity=0.326  Sum_probs=224.2

Q ss_pred             CCCCcEEEE-EeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCC-CccccCCCchhhccCCCCch
Q 016290            9 PDEQVVLGE-EIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVG-RAFSAGGDLKMFYDGRNSKD   86 (392)
Q Consensus         9 ~~~~~V~~~-~~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G-~~FcaG~Dl~~l~~~~~~~~   86 (392)
                      +....+.++ .+++|++||||||+++|+||.+|+.+|.++++.++.|++|++|||||.| ++||+|+|++++....  ..
T Consensus         3 ~~~~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~--~~   80 (256)
T PRK06143          3 MLNAHAGVTRDDRGVATLTIRNAGSLNILGTPVILALTQALRWLAADPDVRVLVLRGAGEKAFIGGADIKEMATLD--QA   80 (256)
T ss_pred             cccccceeeecCCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhcCCCcEEEEEEeCCCCcccCCcCHHHHhhcC--hh
Confidence            344567777 4689999999999999999999999999999999999999999999999 8999999999875421  12


Q ss_pred             hHHHHHHHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcch-HH
Q 016290           87 SCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HL  165 (392)
Q Consensus        87 ~~~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G-~~  165 (392)
                      ....++.....++..|.++||||||+|||+|+|||++|+++|||||++++++|++||+++|+ |++|++++|+|++| ..
T Consensus        81 ~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~-p~~~~~~~l~~~iG~~~  159 (256)
T PRK06143         81 SAEAFISRLRDLCDAVRHFPVPVIARIPGWCLGGGLELAAACDLRIAAHDAQFGMPEVRVGI-PSVIHAALLPRLIGWAR  159 (256)
T ss_pred             hHHHHHHHHHHHHHHHHhCCCCEEEEECCEEeehhHHHHHhCCEEEecCCCEEeCCccccCC-CCccHHHHHHHhcCHHH
Confidence            22445556677888999999999999999999999999999999999999999999999998 88899999999999 89


Q ss_pred             HHHHhhcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHhCc
Q 016290          166 GEFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSK  245 (392)
Q Consensus       166 a~~L~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~  245 (392)
                      +.+|++||++++|+||+++||||++||++++.+.+.++                                          
T Consensus       160 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~------------------------------------------  197 (256)
T PRK06143        160 TRWLLLTGETIDAAQALAWGLVDRVVPLAELDAAVERL------------------------------------------  197 (256)
T ss_pred             HHHHHHcCCcCCHHHHHHCCCcCeecCHHHHHHHHHHH------------------------------------------
Confidence            99999999999999999999999999988776544433                                          


Q ss_pred             CCHHHHHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHcCCccHHHHHHH
Q 016290          246 ETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGIR  325 (392)
Q Consensus       246 ~~~eei~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eGv~  325 (392)
                                               +++|+..||.+++.+|++++.....++.+.+..|...+..++.+   +|++||++
T Consensus       198 -------------------------a~~la~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~---~d~~e~~~  249 (256)
T PRK06143        198 -------------------------AASLAGCGPQALRQQKRLLREWEDMPLDVAIDDSVAEFGAAFLT---GEPQRHMA  249 (256)
T ss_pred             -------------------------HHHHHcCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHhcC---hHHHHHHH
Confidence                                     78999999999999999999988889999999999999999999   99999999


Q ss_pred             HHHhcc
Q 016290          326 ALTIEK  331 (392)
Q Consensus       326 a~l~dK  331 (392)
                      +|+ +|
T Consensus       250 af~-ek  254 (256)
T PRK06143        250 AFL-NR  254 (256)
T ss_pred             HHH-hh
Confidence            999 56

>PRK06072 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=8.4e-53  Score=397.19  Aligned_cols=246  Identities=22%  Similarity=0.303  Sum_probs=221.2

Q ss_pred             EEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhHHHHHH
Q 016290           14 VLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVY   93 (392)
Q Consensus        14 V~~~~~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~~~~~   93 (392)
                      |.++.+++|++||||||+++|+||.+|+.+|.++++.++.|++|++|||+|.|++||+|+|++++....     ...+..
T Consensus         2 i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~a~~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~-----~~~~~~   76 (248)
T PRK06072          2 IKVESREGYAIVTMSRPDKLNALNLEMRNEFISKLKQINADPKIRVVIVTGEGRAFCVGADLSEFAPDF-----AIDLRE   76 (248)
T ss_pred             eEEEEECCEEEEEECCcccccCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCcccCcCHHHHhhhh-----HHHHHH
Confidence            678899999999999999999999999999999999999999999999999999999999999875311     123334


Q ss_pred             HHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcchHHHHHHhhcC
Q 016290           94 RMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHLGEFLALTG  173 (392)
Q Consensus        94 ~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G~~a~~L~ltG  173 (392)
                      ..+.++..|.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++|..+++++|||
T Consensus        77 ~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~~~~g~~a~~lll~g  156 (248)
T PRK06072         77 TFYPIIREIRFSDKIYISAINGVTAGACIGIALSTDFKFASRDVKFVTAFQRLGLASDTGVAYFLLKLTGQRFYEILVLG  156 (248)
T ss_pred             HHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEecchhhcCcCCCchHHHHHHHHhhHHHHHHHHhC
Confidence            45667888999999999999999999999999999999999999999999999999999999999999998899999999


Q ss_pred             CcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHhCcCCHHHHHH
Q 016290          174 ARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKETVAEIIK  253 (392)
Q Consensus       174 ~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~eei~~  253 (392)
                      ++++|+||+++|||+.+   +++.+.                                                      
T Consensus       157 ~~~~a~eA~~~Glv~~~---~~~~~~------------------------------------------------------  179 (248)
T PRK06072        157 GEFTAEEAERWGLLKIS---EDPLSD------------------------------------------------------  179 (248)
T ss_pred             CccCHHHHHHCCCcccc---chHHHH------------------------------------------------------
Confidence            99999999999999953   233221                                                      


Q ss_pred             HHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHhccCC
Q 016290          254 SFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGIRALTIEKDN  333 (392)
Q Consensus       254 ~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eGv~a~l~dK~r  333 (392)
                                   |.+++++|++.||.+++.+|++++.....++++.++.|...+..++.+   +|++||+++|+ +| |
T Consensus       180 -------------a~~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~---~d~~eg~~af~-~k-r  241 (248)
T PRK06072        180 -------------AEEMANRISNGPFQSYIAAKRMINLVLYNDLEEFLEYESAIQGYLGKT---EDFKEGISSFK-EK-R  241 (248)
T ss_pred             -------------HHHHHHHHHhCCHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHhCC---hhHHHHHHHHh-cC-C
Confidence                         224478999999999999999999988889999999999999999999   99999999999 66 8


Q ss_pred             CCCCCC
Q 016290          334 APKWDP  339 (392)
Q Consensus       334 ~P~w~~  339 (392)
                      +|+|++
T Consensus       242 ~p~~~~  247 (248)
T PRK06072        242 EPKFKG  247 (248)
T ss_pred             CCCCCC
Confidence            999985

>PRK08260 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=7.2e-53  Score=407.39  Aligned_cols=257  Identities=21%  Similarity=0.286  Sum_probs=221.2

Q ss_pred             CCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCC--C-----
Q 016290           11 EQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGR--N-----   83 (392)
Q Consensus        11 ~~~V~~~~~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~--~-----   83 (392)
                      +..|.++++++|++||||||+++|+||.+|+.+|.++|+.++.|++|++|||+|.|++||+|+|++++....  .     
T Consensus         3 ~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~   82 (296)
T PRK08260          3 YETIRYDVADGIATITLNRPDKLNAFTVTMARELIEAFDAADADDAVRAVIVTGAGRAFCAGADLSAGGNTFDLDAPRTP   82 (296)
T ss_pred             cceEEEeeeCCEEEEEeCCCcccCCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCCeecCcChHHhhhcccccccccc
Confidence            456899999999999999999999999999999999999999999999999999999999999999874210  0     


Q ss_pred             -------Cch-hHHHHHHHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhH
Q 016290           84 -------SKD-SCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFS  155 (392)
Q Consensus        84 -------~~~-~~~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s  155 (392)
                             ... ....+......+...|..+|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pkPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~g~~  162 (296)
T PRK08260         83 VEADEEDRADPSDDGVRDGGGRVTLRIFDSLKPVIAAVNGPAVGVGATMTLAMDIRLASTAARFGFVFGRRGIVPEAASS  162 (296)
T ss_pred             cccccccccchhHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHhHHHHHhCCEEEeeCCCEEecchhhcCcCCCcchh
Confidence                   000 011222333457788999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhcch-HHHHHHhhcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHH
Q 016290          156 FIHSRLPG-HLGEFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLN  234 (392)
Q Consensus       156 ~~L~rl~G-~~a~~L~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  234 (392)
                      ++|+|++| .++++|+|||++++|+||+++||||++||++++.+.+.                                 
T Consensus       163 ~~l~r~vG~~~A~~llltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~---------------------------------  209 (296)
T PRK08260        163 WFLPRLVGLQTALEWVYSGRVFDAQEALDGGLVRSVHPPDELLPAAR---------------------------------  209 (296)
T ss_pred             hhHHHhhCHHHHHHHHHcCCccCHHHHHHCCCceeecCHHHHHHHHH---------------------------------
Confidence            99999999 99999999999999999999999999999877654333                                 


Q ss_pred             HHHHHHHHhCcCCHHHHHHHHHHhhccCCcccHHHHHHHHhhc-CchHHHHHHHHHHHhhh--cCHHHHHHHHHHHHHHH
Q 016290          235 KQSIIDECFSKETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKS-SPTGLKITLRSVREGRE--QSLAECLKKEFRLTINI  311 (392)
Q Consensus       235 ~~~~i~~~f~~~~~eei~~~l~~~~~~~~~~~a~~~~~~l~~~-sp~sl~~tk~~l~~~~~--~~l~~~l~~E~~~~~~~  311 (392)
                                                        +++++|+++ +|.+++.+|++++....  ..+.. ...|...+..+
T Consensus       210 ----------------------------------~~a~~i~~~~~~~a~~~~K~~l~~~~~~~~~~~~-~~~e~~~~~~~  254 (296)
T PRK08260        210 ----------------------------------ALAREIADNTSPVSVALTRQMMWRMAGADHPMEA-HRVDSRAIYSR  254 (296)
T ss_pred             ----------------------------------HHHHHHHhcCChHHHHHHHHHHHhcccCCCcHHH-HHHHHHHHHHH
Confidence                                              337888885 99999999999998743  23443 35677788888


Q ss_pred             HHcCCccHHHHHHHHHHhccCCCCCCCCC
Q 016290          312 LRAIISADIYEGIRALTIEKDNAPKWDPP  340 (392)
Q Consensus       312 ~~~~~~~d~~eGv~a~l~dK~r~P~w~~~  340 (392)
                      +.+   +|++||+++|+ +| |+|.|+++
T Consensus       255 ~~~---~d~~egi~af~-~k-r~p~f~~~  278 (296)
T PRK08260        255 GRS---GDGKEGVSSFL-EK-RPAVFPGK  278 (296)
T ss_pred             ccC---hhHHHHHHHHh-cC-CCCCCCCC
Confidence            888   99999999999 66 89999875

>PRK07260 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=9.6e-53  Score=398.48  Aligned_cols=249  Identities=24%  Similarity=0.352  Sum_probs=224.9

Q ss_pred             CcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCC-c-hhHH
Q 016290           12 QVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNS-K-DSCL   89 (392)
Q Consensus        12 ~~V~~~~~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~-~-~~~~   89 (392)
                      .+|.++.+++|++|+||||++.|+||.+|+.+|.++++.++.|+++++|||+|.|++||+|+|++++...... . ....
T Consensus         2 ~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~   81 (255)
T PRK07260          2 EHIIYEVEDDLATLTLNRPEVSNGFNIPMCQEILEALRLAEEDPSVRFLLINANGKVFSVGGDLVEMKRAVDEDDVQSLV   81 (255)
T ss_pred             CceEEEEECCEEEEEeCCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcccccCHHHHHhhccccchhhHH
Confidence            4688999999999999999999999999999999999999999999999999999999999999988642111 1 1112


Q ss_pred             HHHHHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcch-HHHHH
Q 016290           90 EVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HLGEF  168 (392)
Q Consensus        90 ~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G-~~a~~  168 (392)
                      .+....++++..|.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++| ..+++
T Consensus        82 ~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~  161 (255)
T PRK07260         82 KIAELVNEISFAIKQLPKPVIMCVDGAVAGAAANMAVAADFCIASTKTKFIQAFVGVGLAPDAGGLFLLTRAIGLNRATH  161 (255)
T ss_pred             HHHHHHHHHHHHHHcCCCCEEEEecCeeehhhHHHHHhCCEEEEeCCCEEechHhhcCCCCCCchhhhhHHhhCHHHHHH
Confidence            33344567788999999999999999999999999999999999999999999999999999999999999999 89999


Q ss_pred             HhhcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHhCcCCH
Q 016290          169 LALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKETV  248 (392)
Q Consensus       169 L~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~  248 (392)
                      |+|||++++|+||+++||||++||++++.+.+.++                                             
T Consensus       162 l~l~g~~~sa~eA~~~Glv~~vv~~~~l~~~a~~~---------------------------------------------  196 (255)
T PRK07260        162 LAMTGEALTAEKALEYGFVYRVAESEKLEKTCEQL---------------------------------------------  196 (255)
T ss_pred             HHHhCCccCHHHHHHcCCcceecCHhHHHHHHHHH---------------------------------------------
Confidence            99999999999999999999999988776544433                                             


Q ss_pred             HHHHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHH
Q 016290          249 AEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGIRALT  328 (392)
Q Consensus       249 eei~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eGv~a~l  328 (392)
                                            +++|++.+|.+++.+|+.++.....++++.+..|...+..++.+   +|++||+++|+
T Consensus       197 ----------------------a~~la~~~~~a~~~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~~---~~~~e~~~af~  251 (255)
T PRK07260        197 ----------------------LKKLRRGSSNSYAAIKSLVWESFFKGWEDYAKLELALQESLAFK---EDFKEGVRAFS  251 (255)
T ss_pred             ----------------------HHHHHcCCHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHhcC---HHHHHHHHHHH
Confidence                                  78999999999999999999988889999999999999999999   99999999999


Q ss_pred             hcc
Q 016290          329 IEK  331 (392)
Q Consensus       329 ~dK  331 (392)
                       +|
T Consensus       252 -~k  253 (255)
T PRK07260        252 -ER  253 (255)
T ss_pred             -hc
Confidence             55

>PRK07827 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.7e-52  Score=397.93  Aligned_cols=256  Identities=23%  Similarity=0.300  Sum_probs=228.4

Q ss_pred             CCCCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCC-CCchh
Q 016290            9 PDEQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGR-NSKDS   87 (392)
Q Consensus         9 ~~~~~V~~~~~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~-~~~~~   87 (392)
                      +....|.++.+++|++|+||||++.|+||.+|+.+|.++++.++.|+++++|||+|.|++||+|+|++++.... .....
T Consensus         3 ~~~~~i~~~~~~~v~~i~lnrp~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~   82 (260)
T PRK07827          3 PVDTLVRYAVDGGVATLTLDSPHNRNALSARLVAQLHDGLRAAAADPAVRAVVLTHTGGTFCAGADLSEAGGGGGDPYDA   82 (260)
T ss_pred             CCCcceEEEeeCCEEEEEEcCccccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEcCCCCccCCcChHHHhhcccCchhH
Confidence            45567889999999999999999999999999999999999999999999999999999999999999875421 11111


Q ss_pred             HHHHHHHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcchHHHH
Q 016290           88 CLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHLGE  167 (392)
Q Consensus        88 ~~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G~~a~  167 (392)
                      ...++....++++.|.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++++|++|..++
T Consensus        83 ~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~l~~~~a~  162 (260)
T PRK07827         83 AVARAREMTALLRAIVELPKPVIAAIDGHVRAGGFGLVGACDIVVAGPESTFALTEARIGVAPAIISLTLLPRLSPRAAA  162 (260)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCEEEEEcCeeecchhhHHHhCCEEEEcCCCEEeCcccccCCCCCcccchhHHhhhHHHHH
Confidence            13455666778899999999999999999999999999999999999999999999999999999999999999888899


Q ss_pred             HHhhcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHhCcCC
Q 016290          168 FLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKET  247 (392)
Q Consensus       168 ~L~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~~~  247 (392)
                      +|++||++++++||+++|||+++++  ++.+.+.                                              
T Consensus       163 ~l~l~g~~~~a~eA~~~Glv~~v~~--~l~~~a~----------------------------------------------  194 (260)
T PRK07827        163 RYYLTGEKFGAAEAARIGLVTAAAD--DVDAAVA----------------------------------------------  194 (260)
T ss_pred             HHHHhCCccCHHHHHHcCCcccchH--HHHHHHH----------------------------------------------
Confidence            9999999999999999999999874  3443222                                              


Q ss_pred             HHHHHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHcCCccHHHHHHHHH
Q 016290          248 VAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGIRAL  327 (392)
Q Consensus       248 ~eei~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eGv~a~  327 (392)
                                           +++++|++.||.+++.+|+++++....++.+.++.|...+..++.+   +|+++|+++|
T Consensus       195 ---------------------~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~af  250 (260)
T PRK07827        195 ---------------------ALLADLRRGSPQGLAESKALTTAAVLAGFDRDAEELTEESARLFVS---DEAREGMTAF  250 (260)
T ss_pred             ---------------------HHHHHHHhCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcC---hhHHHHHHHH
Confidence                                 3478999999999999999999988889999999999999999999   9999999999


Q ss_pred             HhccCCCCCCC
Q 016290          328 TIEKDNAPKWD  338 (392)
Q Consensus       328 l~dK~r~P~w~  338 (392)
                      + +| |+|+|+
T Consensus       251 ~-~k-r~p~~~  259 (260)
T PRK07827        251 L-QK-RPPRWA  259 (260)
T ss_pred             h-cC-CCCCCC
Confidence            9 66 789995

>PRK11423 methylmalonyl-CoA decarboxylase; Provisional

Probab=100.00  E-value=9.9e-53  Score=399.47  Aligned_cols=255  Identities=19%  Similarity=0.322  Sum_probs=226.3

Q ss_pred             CCCCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcC-C-CccccCCCchhhccCCCCch
Q 016290            9 PDEQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGV-G-RAFSAGGDLKMFYDGRNSKD   86 (392)
Q Consensus         9 ~~~~~V~~~~~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~-G-~~FcaG~Dl~~l~~~~~~~~   86 (392)
                      |+++.|.++.+++|++||||||+++|+||.+|+.+|.++++.+++|+ +++|||+|. | ++||+|+|++++..... + 
T Consensus         1 ~~~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~-v~~vvltg~~~~~~FcaG~Dl~~~~~~~~-~-   77 (261)
T PRK11423          1 MSMQYVNVVTINKIATITFNNPAKRNALSKVLIDDLMQALSDLNRPE-IRVVILRAPSGSKVWSAGHDIHELPSGGR-D-   77 (261)
T ss_pred             CCccceEEEeECCEEEEEEcCccccCCCCHHHHHHHHHHHHHHhcCC-ceEEEEECCCCCCeeECCcCHHHHhhccc-c-
Confidence            35668999999999999999999999999999999999999999988 999999996 3 89999999998754211 1 


Q ss_pred             hHHHHHHHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcch-HH
Q 016290           87 SCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HL  165 (392)
Q Consensus        87 ~~~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G-~~  165 (392)
                       ...+.....+++..|..+|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++++|++| .+
T Consensus        78 -~~~~~~~~~~l~~~i~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~~~~g~~~~l~~~vg~~~  156 (261)
T PRK11423         78 -PLSYDDPLRQILRMIQKFPKPVIAMVEGSVWGGAFELIMSCDLIIAASTSTFAMTPANLGVPYNLSGILNFTNDAGFHI  156 (261)
T ss_pred             -HHHHHHHHHHHHHHHHhCCCCEEEEEecEEechHHHHHHhCCEEEecCCCEecCchhhcCCCCCccHHHHHHHHhHHHH
Confidence             1233444567888999999999999999999999999999999999999999999999999999999999999999 99


Q ss_pred             HHHHhhcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHhCc
Q 016290          166 GEFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSK  245 (392)
Q Consensus       166 a~~L~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~  245 (392)
                      +.+|++||++++|+||+++||||++||++++.+.+.                                            
T Consensus       157 a~~l~l~g~~~~a~eA~~~GLv~~vv~~~~l~~~a~--------------------------------------------  192 (261)
T PRK11423        157 VKEMFFTASPITAQRALAVGILNHVVEVEELEDFTL--------------------------------------------  192 (261)
T ss_pred             HHHHHHcCCCcCHHHHHHcCCcCcccCHHHHHHHHH--------------------------------------------
Confidence            999999999999999999999999999887765433                                            


Q ss_pred             CCHHHHHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhh-cCH-HHHHHHHHHHHHHHHHcCCccHHHHH
Q 016290          246 ETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGRE-QSL-AECLKKEFRLTINILRAIISADIYEG  323 (392)
Q Consensus       246 ~~~eei~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~-~~l-~~~l~~E~~~~~~~~~~~~~~d~~eG  323 (392)
                                             +++++|++.||.+++.+|++++.... ..+ .+.++.|......++.+   +|++||
T Consensus       193 -----------------------~~a~~l~~~~~~a~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s---~d~~eg  246 (261)
T PRK11423        193 -----------------------QMAHHISEKAPLAIAVIKEQLRVLGEAHPMNPDEFERIQGLRRAVYDS---EDYQEG  246 (261)
T ss_pred             -----------------------HHHHHHHhcCHHHHHHHHHHHHhhcccCCcchHHHHHHHHHHHHHhCC---hhHHHH
Confidence                                   34789999999999999999997643 344 68888898998999999   999999


Q ss_pred             HHHHHhccCCCCCCCC
Q 016290          324 IRALTIEKDNAPKWDP  339 (392)
Q Consensus       324 v~a~l~dK~r~P~w~~  339 (392)
                      +.+|+ +| |+|+|++
T Consensus       247 ~~af~-~k-r~p~~~~  260 (261)
T PRK11423        247 MNAFL-EK-RKPVFVG  260 (261)
T ss_pred             HHHHh-cc-CCCCCCC
Confidence            99999 66 8999975

>PRK07509 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.8e-52  Score=398.13  Aligned_cols=254  Identities=20%  Similarity=0.241  Sum_probs=223.7

Q ss_pred             CCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCc-hhHH
Q 016290           11 EQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSK-DSCL   89 (392)
Q Consensus        11 ~~~V~~~~~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~-~~~~   89 (392)
                      ++.|.++++++|++||||||+++|+||.+|+.+|.++++.++.|++|++|||+|.|++||+|+|++++....... ....
T Consensus         2 ~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~   81 (262)
T PRK07509          2 MDRVSVTIEDGIADVRLNRPDKMNALDFAMFEELIATIKRLKKDRGIRAVILSGEGGAFCAGLDVKSVASSPGNAVKLLF   81 (262)
T ss_pred             CceEEEEeeCCEEEEEecCcccccCCCHHHHHHHHHHHHHHhhCCCCeEEEEECCCCCcCCCcCHHHHhcccchhhhhHh
Confidence            456889999999999999999999999999999999999999999999999999999999999999876421111 1111


Q ss_pred             H----HHHHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcch-H
Q 016290           90 E----VVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-H  164 (392)
Q Consensus        90 ~----~~~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G-~  164 (392)
                      .    ......++...|.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++| .
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~  161 (262)
T PRK07509         82 KRLPGNANLAQRVSLGWRRLPVPVIAALEGVCFGGGLQIALGADIRIAAPDTKLSIMEAKWGLVPDMAGTVSLRGLVRKD  161 (262)
T ss_pred             hhhHHHHHHHHHHHHHHHhCCCCEEEEECCeeecchHHHHHhCCEEEecCCCEeecchhccCCCCCchHHHHHHHHhCHH
Confidence            1    1122344666788999999999999999999999999999999999999999999999999999999999999 8


Q ss_pred             HHHHHhhcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHhC
Q 016290          165 LGEFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFS  244 (392)
Q Consensus       165 ~a~~L~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~  244 (392)
                      .+++|+|||++++|+||+++||||++|+.  +.+.                                             
T Consensus       162 ~a~~l~ltg~~~~a~eA~~~Glv~~vv~~--~~~~---------------------------------------------  194 (262)
T PRK07509        162 VARELTYTARVFSAEEALELGLVTHVSDD--PLAA---------------------------------------------  194 (262)
T ss_pred             HHHHHHHcCCCcCHHHHHHcCChhhhhch--HHHH---------------------------------------------
Confidence            99999999999999999999999999953  3222                                             


Q ss_pred             cCCHHHHHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHcCCccHHHHHH
Q 016290          245 KETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGI  324 (392)
Q Consensus       245 ~~~~eei~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eGv  324 (392)
                                            +.+++++|++.+|.+++.+|++++.....++.+++..|.+.+..++.+   +|++||+
T Consensus       195 ----------------------a~~~a~~l~~~~~~~~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~---~d~~e~~  249 (262)
T PRK07509        195 ----------------------ALALAREIAQRSPDAIAAAKRLINRSWTASVRALLARESVEQIRLLLG---KNQKIAV  249 (262)
T ss_pred             ----------------------HHHHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcC---hhHHHHH
Confidence                                  224478999999999999999999988889999999999999999999   9999999


Q ss_pred             HHHHhccCCCCCCC
Q 016290          325 RALTIEKDNAPKWD  338 (392)
Q Consensus       325 ~a~l~dK~r~P~w~  338 (392)
                      ++|+ +| |+|.|.
T Consensus       250 ~af~-ek-r~p~~~  261 (262)
T PRK07509        250 KAQM-KK-RAPKFL  261 (262)
T ss_pred             HHHh-cC-CCCCCC
Confidence            9999 66 889996

>PRK07396 dihydroxynaphthoic acid synthetase; Validated

Probab=100.00  E-value=1.6e-52  Score=400.59  Aligned_cols=256  Identities=21%  Similarity=0.307  Sum_probs=222.5

Q ss_pred             CCCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCC-CccccCCCchhhccCCCCchhH
Q 016290           10 DEQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVG-RAFSAGGDLKMFYDGRNSKDSC   88 (392)
Q Consensus        10 ~~~~V~~~~~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G-~~FcaG~Dl~~l~~~~~~~~~~   88 (392)
                      ++..|.++.+++|++||||||+++|+||.+|+.+|.++++.++.|++|++|||+|.| ++||+|+|++++..........
T Consensus        11 ~~~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~   90 (273)
T PRK07396         11 EYEDILYKSADGIAKITINRPEVRNAFRPKTVKEMIDAFADARDDDNIGVIILTGAGDKAFCSGGDQKVRGYGGYVDDDG   90 (273)
T ss_pred             CCcceEEEecCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEEeCCCCceEeCcChhhhhcccccchhh
Confidence            456799999999999999999999999999999999999999999999999999999 7999999999874311101110


Q ss_pred             HHHHHHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcch-HHHH
Q 016290           89 LEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HLGE  167 (392)
Q Consensus        89 ~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G-~~a~  167 (392)
                      ...+ ....++..|.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++| ..++
T Consensus        91 ~~~~-~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~~~~~~l~~~vG~~~a~  169 (273)
T PRK07396         91 VPRL-NVLDLQRLIRTCPKPVIAMVAGYAIGGGHVLHLVCDLTIAADNAIFGQTGPKVGSFDGGYGASYLARIVGQKKAR  169 (273)
T ss_pred             hhhh-HHHHHHHHHHhCCCCEEEEECCEEehHHHHHHHhCCEEEeeCCcEEecccccccccCCchHHHHHHHHhhHHHHH
Confidence            1111 1245677889999999999999999999999999999999999999999999999999999999999999 8999


Q ss_pred             HHhhcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHhCcCC
Q 016290          168 FLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKET  247 (392)
Q Consensus       168 ~L~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~~~  247 (392)
                      +|++||++++|+||+++||||++||++++.+.+.+                                             
T Consensus       170 ~l~ltg~~~~A~eA~~~GLv~~vv~~~~l~~~a~~---------------------------------------------  204 (273)
T PRK07396        170 EIWFLCRQYDAQEALDMGLVNTVVPLADLEKETVR---------------------------------------------  204 (273)
T ss_pred             HHHHhCCCcCHHHHHHcCCcCeecCHHHHHHHHHH---------------------------------------------
Confidence            99999999999999999999999998877654433                                             


Q ss_pred             HHHHHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHcCCccHHHHHHHHH
Q 016290          248 VAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGIRAL  327 (392)
Q Consensus       248 ~eei~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eGv~a~  327 (392)
                                            ++++|++.||.+++.+|++++.... .++.....|...+..++.+   +|++||+++|
T Consensus       205 ----------------------~a~~la~~~~~a~~~~K~~l~~~~~-~~~~~~~~e~~~~~~~~~~---~d~~egi~af  258 (273)
T PRK07396        205 ----------------------WCREMLQNSPMALRCLKAALNADCD-GQAGLQELAGNATMLFYMT---EEAQEGRNAF  258 (273)
T ss_pred             ----------------------HHHHHHhCCHHHHHHHHHHHHhhhc-cHHHHHHHHHHHHHHHhcC---hhHHHHHHHH
Confidence                                  3789999999999999999997644 4565566788888888888   9999999999


Q ss_pred             HhccCCCCCCCC
Q 016290          328 TIEKDNAPKWDP  339 (392)
Q Consensus       328 l~dK~r~P~w~~  339 (392)
                      + +| |+|+|..
T Consensus       259 ~-~k-r~p~~~~  268 (273)
T PRK07396        259 N-EK-RQPDFSK  268 (273)
T ss_pred             h-CC-CCCCCCC
Confidence            9 66 8999975

>PLN02888 enoyl-CoA hydratase

Probab=100.00  E-value=3e-52  Score=396.86  Aligned_cols=254  Identities=19%  Similarity=0.290  Sum_probs=223.6

Q ss_pred             CCCCCcEEEEE-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCch
Q 016290            8 NPDEQVVLGEE-IGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKD   86 (392)
Q Consensus         8 ~~~~~~V~~~~-~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~   86 (392)
                      +.+.+.|.++. +++|++||||||+++|+||.+|+.+|.++++.++.|++|++|||||.|++||+|+|++++....... 
T Consensus         5 ~~~~~~i~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~-   83 (265)
T PLN02888          5 TVSENLILVPKSRNGIATITINRPKALNALTRPMMVELAAAFKRLDEDDSVKVIILTGSGRAFCSGVDLTAAEEVFKGD-   83 (265)
T ss_pred             cCCCCeEEEEeccCCEEEEEEcCCCcccCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCcccCCCCHHHHHhhccch-
Confidence            45667788886 7899999999999999999999999999999999999999999999999999999999864311111 


Q ss_pred             hHHHHHHHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcch-HH
Q 016290           87 SCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HL  165 (392)
Q Consensus        87 ~~~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G-~~  165 (392)
                       ...   ...+++..|.++|||+||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|+|++| ..
T Consensus        84 -~~~---~~~~~~~~i~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~  159 (265)
T PLN02888         84 -VKD---VETDPVAQMERCRKPIIGAINGFAITAGFEIALACDILVASRGAKFIDTHAKFGIFPSWGLSQKLSRIIGANR  159 (265)
T ss_pred             -hhH---HHHHHHHHHHhCCCCEEEEECCeeechHHHHHHhCCEEEecCCCEecCccccccCCCCccHhhHHHHHhCHHH
Confidence             111   1245667789999999999999999999999999999999999999999999999999999999999999 89


Q ss_pred             HHHHhhcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHhCc
Q 016290          166 GEFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSK  245 (392)
Q Consensus       166 a~~L~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~  245 (392)
                      +++|+|||++++|+||+++||||++||++++.+.+.                                            
T Consensus       160 a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~--------------------------------------------  195 (265)
T PLN02888        160 AREVSLTAMPLTAETAERWGLVNHVVEESELLKKAR--------------------------------------------  195 (265)
T ss_pred             HHHHHHhCCccCHHHHHHcCCccEeeChHHHHHHHH--------------------------------------------
Confidence            999999999999999999999999999887765433                                            


Q ss_pred             CCHHHHHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHH--HcCCccHHHHH
Q 016290          246 ETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINIL--RAIISADIYEG  323 (392)
Q Consensus       246 ~~~eei~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~--~~~~~~d~~eG  323 (392)
                                             +++++|++.+|.+++.+|++++.....++++++..|......++  .+   +|++||
T Consensus       196 -----------------------~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~---~d~~e~  249 (265)
T PLN02888        196 -----------------------EVAEAIIKNNQGMVLRYKSVINDGLKLDLGHALQLEKERAHDYYNGMT---KEQFQK  249 (265)
T ss_pred             -----------------------HHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccCC---HHHHHH
Confidence                                   33789999999999999999999888899999999988777775  36   999999


Q ss_pred             HHHHHhccCCCCCCC
Q 016290          324 IRALTIEKDNAPKWD  338 (392)
Q Consensus       324 v~a~l~dK~r~P~w~  338 (392)
                      +++|+ +| |+|+=.
T Consensus       250 ~~af~-ek-r~~~~~  262 (265)
T PLN02888        250 MQEFI-AG-RSSKKP  262 (265)
T ss_pred             HHHHH-hc-CCCCCC
Confidence            99999 66 667643

>TIGR03189 dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hydratase

Probab=100.00  E-value=3.1e-52  Score=393.81  Aligned_cols=246  Identities=20%  Similarity=0.302  Sum_probs=216.4

Q ss_pred             EEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhHHHHHH
Q 016290           14 VLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVY   93 (392)
Q Consensus        14 V~~~~~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~~~~~   93 (392)
                      |.++++++|++||||||+ .|+||.+|+.+|.++++.++.|+++++|||||.|++||+|+|++++..    . ....++.
T Consensus         3 v~~~~~~~v~~itlnrp~-~Nal~~~~~~~l~~~l~~~~~~~~vr~vVl~g~g~~FcaG~Dl~~~~~----~-~~~~~~~   76 (251)
T TIGR03189         3 VWLERDGKLLRLRLARPK-ANIVDAAMIAALSAALGEHLEDSALRAVLLDAEGPHFSFGASVAEHMP----D-QCAAMLA   76 (251)
T ss_pred             EEEEeeCCEEEEEeCCCC-cCCCCHHHHHHHHHHHHHHHcCCCceEEEEECCCCceecCcChhhhCc----h-hHHHHHH
Confidence            788899999999999997 599999999999999999999999999999999999999999997532    1 1133445


Q ss_pred             HHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcch-HHHHHHhhc
Q 016290           94 RMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HLGEFLALT  172 (392)
Q Consensus        94 ~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G-~~a~~L~lt  172 (392)
                      ...+++..|.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|+ |++++|+|++| ..+++|+||
T Consensus        77 ~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~-~~~~~l~~~vg~~~a~~l~lt  155 (251)
T TIGR03189        77 SLHKLVIAMLDSPVPILVAVRGQCLGGGLEVAAAGNLMFAAPDAKLGQPEIVLGVFAP-AASCLLPERMGRVAAEDLLYS  155 (251)
T ss_pred             HHHHHHHHHHhCCCCEEEEecCeeeeHHHHHHHhCCEEEEcCCCEEeCchhhcCCCCC-chHHHHHHHhCHHHHHHHHHc
Confidence            5567888999999999999999999999999999999999999999999999999997 56789999999 899999999


Q ss_pred             CCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHhCcCCHHHHH
Q 016290          173 GARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKETVAEII  252 (392)
Q Consensus       173 G~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~eei~  252 (392)
                      |++++|+||+++||||+++|+.+  +  ..+                                                 
T Consensus       156 g~~~~a~eA~~~Glv~~v~~~~~--~--~a~-------------------------------------------------  182 (251)
T TIGR03189       156 GRSIDGAEGARIGLANAVAEDPE--N--AAL-------------------------------------------------  182 (251)
T ss_pred             CCCCCHHHHHHCCCcceecCcHH--H--HHH-------------------------------------------------
Confidence            99999999999999999997532  1  111                                                 


Q ss_pred             HHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHH-HHHHHHHHHHHcCCccHHHHHHHHHHhcc
Q 016290          253 KSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLK-KEFRLTINILRAIISADIYEGIRALTIEK  331 (392)
Q Consensus       253 ~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~-~E~~~~~~~~~~~~~~d~~eGv~a~l~dK  331 (392)
                                     ..++++|+++||.+++.+|++++.....++++.+. .|......++.+   +|++||+++|+ +|
T Consensus       183 ---------------~~~a~~la~~~p~a~~~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~s---~d~~eg~~af~-ek  243 (251)
T TIGR03189       183 ---------------AWFDEHPAKLSASSLRFAVRAARLGMNERVKAKIAEVEALYLEELMAT---HDAVEGLNAFL-EK  243 (251)
T ss_pred             ---------------HHHHHHHHhCCHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHhCC---HhHHHHHHHHH-hc
Confidence                           01157899999999999999999888888888774 787888888888   99999999999 66


Q ss_pred             CCCCCCCC
Q 016290          332 DNAPKWDP  339 (392)
Q Consensus       332 ~r~P~w~~  339 (392)
                       |+|.|++
T Consensus       244 -r~p~~~~  250 (251)
T TIGR03189       244 -RPALWED  250 (251)
T ss_pred             -CCCCCCC
Confidence             8999975

This enzyme, cyclohexa-1,5-dienecarbonyl-CoA hydratase, also called dienoyl-CoA hydratase, acts on the product of benzoyl-CoA reductase (EC 1.3.99.15). Benzoyl-CoA is a common intermediate in the degradation of many aromatic compounds, and this enzyme is part of an anaerobic pathway for dearomatization and degradation.

>PRK05870 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=2.1e-52  Score=394.83  Aligned_cols=243  Identities=20%  Similarity=0.281  Sum_probs=220.7

Q ss_pred             CcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhHHHH
Q 016290           12 QVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEV   91 (392)
Q Consensus        12 ~~V~~~~~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~~~   91 (392)
                      +.|.++++++|++||||||+++|+||.+|+.+|.++++.++.|++|++|||+|.|++||+|+|++++.......  ....
T Consensus         3 ~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~--~~~~   80 (249)
T PRK05870          3 DPVLLDVDDGVALITVNDPDRRNAVTAEMSAQLRAAVAAAEADPDVHALVVTGAGKAFCAGADLTALGAAPGRP--AEDG   80 (249)
T ss_pred             ccEEEEccCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCeecCcChHHHhcccccc--hHHH
Confidence            45889999999999999999999999999999999999999999999999999999999999999986532211  1334


Q ss_pred             HHHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcch-HHHHHHh
Q 016290           92 VYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HLGEFLA  170 (392)
Q Consensus        92 ~~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G-~~a~~L~  170 (392)
                      +...++++..|.++|||+||+|||+|+|||++|+++|||||++++++|++||+++|++|++|++++|+|++| ..+++|+
T Consensus        81 ~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~~G~~~a~~l~  160 (249)
T PRK05870         81 LRRIYDGFLAVASCPLPTIAAVNGAAVGAGLNLALAADVRIAGPKALFDARFQKLGLHPGGGATWMLQRAVGPQVARAAL  160 (249)
T ss_pred             HHHHHHHHHHHHhCCCCEEEEECCEeEchhHHHHHhCCEEEEcCCCEEeCcccccCcCCCCcceeeHHhhhCHHHHHHHH
Confidence            555567778899999999999999999999999999999999999999999999999999999999999999 8999999


Q ss_pred             hcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHhCcCCHHH
Q 016290          171 LTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKETVAE  250 (392)
Q Consensus       171 ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~ee  250 (392)
                      +||++++|+||+++||||++|  +++.+.+.                                                 
T Consensus       161 ltg~~~~a~eA~~~Glv~~vv--~~l~~~a~-------------------------------------------------  189 (249)
T PRK05870        161 LFGMRFDAEAAVRHGLALMVA--DDPVAAAL-------------------------------------------------  189 (249)
T ss_pred             HhCCccCHHHHHHcCCHHHHH--hhHHHHHH-------------------------------------------------
Confidence            999999999999999999999  45544333                                                 


Q ss_pred             HHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhh-cCHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHH
Q 016290          251 IIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGRE-QSLAECLKKEFRLTINILRAIISADIYEGIRALT  328 (392)
Q Consensus       251 i~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~-~~l~~~l~~E~~~~~~~~~~~~~~d~~eGv~a~l  328 (392)
                                        +++++|++.||.+++.+|++++.... .++++++..|...+..++.+   +|++||+++|+
T Consensus       190 ------------------~~a~~la~~~~~a~~~~K~~~~~~~~~~~l~~~~~~e~~~~~~~~~~---~d~~eg~~af~  247 (249)
T PRK05870        190 ------------------ELAAGPAAAPRELVLATKASMRATASLAQHAAAVEFELGPQAASVQS---PEFAARLAAAQ  247 (249)
T ss_pred             ------------------HHHHHHHhCCHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHhcC---hhHHHHHHHHh
Confidence                              33789999999999999999999887 89999999999999999999   99999999998

>PRK08259 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=3.3e-52  Score=394.40  Aligned_cols=248  Identities=26%  Similarity=0.285  Sum_probs=216.3

Q ss_pred             CcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhHHHH
Q 016290           12 QVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEV   91 (392)
Q Consensus        12 ~~V~~~~~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~~~   91 (392)
                      +.|.++++++|++||||||+++|+||.+|+.+|.++++.++.|+++++|||+|.|++||+|+|++++..... .. ....
T Consensus         3 ~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvltg~g~~FcaG~Dl~~~~~~~~-~~-~~~~   80 (254)
T PRK08259          3 MSVRVERNGPVTTVILNRPEVRNAVDGPTAAALADAFRAFDADDAASVAVLWGAGGTFCAGADLKAVGTGRG-NR-LHPS   80 (254)
T ss_pred             ceEEEEEECCEEEEEecCCccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCccCCcChHHHhcccc-hh-hhhh
Confidence            348899999999999999999999999999999999999999999999999999999999999998754211 11 1110


Q ss_pred             HHHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcch-HHHHHHh
Q 016290           92 VYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HLGEFLA  170 (392)
Q Consensus        92 ~~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G-~~a~~L~  170 (392)
                        ....+...+.++|||+||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|+|++| ..+.+|+
T Consensus        81 --~~~~~~~~~~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~~ll  158 (254)
T PRK08259         81 --GDGPMGPSRMRLSKPVIAAVSGYAVAGGLELALWCDLRVAEEDAVFGVFCRRWGVPLIDGGTVRLPRLIGHSRAMDLI  158 (254)
T ss_pred             --hcchhhhHHhcCCCCEEEEECCEEEhHHHHHHHhCCEEEecCCCEecCcccccCCCCCccHHHHHHHHhCHHHHHHHH
Confidence              0011122334799999999999999999999999999999999999999999999999999999999999 8999999


Q ss_pred             hcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHhCcCCHHH
Q 016290          171 LTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKETVAE  250 (392)
Q Consensus       171 ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~ee  250 (392)
                      +||++++|+||+++||||++||++++.+.+.+                                                
T Consensus       159 l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~------------------------------------------------  190 (254)
T PRK08259        159 LTGRPVDADEALAIGLANRVVPKGQARAAAEE------------------------------------------------  190 (254)
T ss_pred             HcCCccCHHHHHHcCCCCEeeChhHHHHHHHH------------------------------------------------
Confidence            99999999999999999999999887654433                                                


Q ss_pred             HHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHhc
Q 016290          251 IIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGIRALTIE  330 (392)
Q Consensus       251 i~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eGv~a~l~d  330 (392)
                                         ++++|++.||.+++.+|++++.....++++++..|...+...+ +   +|++||+++|+ +
T Consensus       191 -------------------~a~~la~~~~~a~~~~K~~~~~~~~~~~~~~~~~e~~~~~~~~-~---~d~~egi~af~-~  246 (254)
T PRK08259        191 -------------------LAAELAAFPQTCLRADRLSALEQWGLPEEAALANEFAHGLAVL-A---AEALEGAARFA-A  246 (254)
T ss_pred             -------------------HHHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHH-h---hHHHHHHHHHH-h
Confidence                               3789999999999999999998878899999999988766655 4   89999999999 6


Q ss_pred             cCCCC
Q 016290          331 KDNAP  335 (392)
Q Consensus       331 K~r~P  335 (392)
                      |+++|
T Consensus       247 ~~~~~  251 (254)
T PRK08259        247 GAGRH  251 (254)
T ss_pred             hhccc
Confidence            76766

>PRK12478 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=4e-52  Score=401.97  Aligned_cols=257  Identities=24%  Similarity=0.289  Sum_probs=218.8

Q ss_pred             CCCCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccC----C--
Q 016290            9 PDEQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDG----R--   82 (392)
Q Consensus         9 ~~~~~V~~~~~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~----~--   82 (392)
                      ++++.|.++.+++|++||||||+++|+||.+|+.+|.++|+.++.|++|++|||||.|++||+|+||++....    .  
T Consensus         2 ~~~~~v~~~~~~~Va~ItLnrP~~~NAl~~~~~~eL~~al~~~~~d~~vrvvVLtG~G~~FcaG~Dl~~~~~~~~~~~~~   81 (298)
T PRK12478          2 PDFQTLLYTTAGPVATITLNRPEQLNTIVPPMPDEIEAAIGLAERDQDIKVIVLRGAGRAFSGGYDFGGGFQHWGEAMMT   81 (298)
T ss_pred             CCceEEEEeccCCEEEEEecCCcccCCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcccCcCccccccccchhccc
Confidence            4466799999999999999999999999999999999999999999999999999999999999999863210    0  


Q ss_pred             CCc-hhHHHH---HHHH---HHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeecccccc-CccCCchh
Q 016290           83 NSK-DSCLEV---VYRM---YWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASI-GFHTDCGF  154 (392)
Q Consensus        83 ~~~-~~~~~~---~~~~---~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~i-Gl~P~~G~  154 (392)
                      ... .....+   ....   ..++..|.+++||+||+|||+|+|||++|+++||+|||+++++|++||+++ |++|  |+
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~A~f~~pe~~l~G~~~--~~  159 (298)
T PRK12478         82 DGRWDPGKDFAMVTARETGPTQKFMAIWRASKPVIAQVHGWCVGGASDYALCADIVIASDDAVIGTPYSRMWGAYL--TG  159 (298)
T ss_pred             ccccCchhhhhhhhhhhcchHHHHHHHHhCCCCEEEEEccEEehhHHHHHHHCCEEEEcCCcEEeccccccccCCc--hh
Confidence            000 101111   1111   235567899999999999999999999999999999999999999999997 9875  34


Q ss_pred             HHHHhhcch-HHHHHHhhcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHH
Q 016290          155 SFIHSRLPG-HLGEFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVL  233 (392)
Q Consensus       155 s~~L~rl~G-~~a~~L~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  233 (392)
                      ++ + +++| .++++|++||++++|+||+++||||++||++++.+.+.++                              
T Consensus       160 ~~-~-~~vG~~~A~~llltg~~i~A~eA~~~GLV~~vv~~~~l~~~a~~~------------------------------  207 (298)
T PRK12478        160 MW-L-YRLSLAKVKWHSLTGRPLTGVQAAEAELINEAVPFERLEARVAEV------------------------------  207 (298)
T ss_pred             HH-H-HHhhHHHHHHHHHcCCccCHHHHHHcCCcceecCHHHHHHHHHHH------------------------------
Confidence            44 3 4578 9999999999999999999999999999998887644444                              


Q ss_pred             HHHHHHHHHhCcCCHHHHHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhh-cCHHHHHHHHHHHHHHHH
Q 016290          234 NKQSIIDECFSKETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGRE-QSLAECLKKEFRLTINIL  312 (392)
Q Consensus       234 ~~~~~i~~~f~~~~~eei~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~-~~l~~~l~~E~~~~~~~~  312 (392)
                                                           +++|+.+||.+++.+|++++.... .++.+++..|...+..++
T Consensus       208 -------------------------------------a~~la~~~p~a~~~~K~~l~~~~~~~~l~~~~~~e~~~~~~~~  250 (298)
T PRK12478        208 -------------------------------------ATELARIPLSQLQAQKLIVNQAYENMGLASTQTLGGILDGLMR  250 (298)
T ss_pred             -------------------------------------HHHHHhCCHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHh
Confidence                                                 789999999999999999998866 569999999999999999


Q ss_pred             HcCCccHHH--------HHHHHHHhccCCCCCCCCCC
Q 016290          313 RAIISADIY--------EGIRALTIEKDNAPKWDPPT  341 (392)
Q Consensus       313 ~~~~~~d~~--------eGv~a~l~dK~r~P~w~~~~  341 (392)
                      .+   +|++        ||++||+ +| |+|+|...+
T Consensus       251 ~s---~d~~e~~~~~~~egv~Af~-ek-R~p~f~~~~  282 (298)
T PRK12478        251 NT---PDALEFIRTAETQGVRAAV-ER-RDGPFGDYS  282 (298)
T ss_pred             cC---hhHHHHHHHHHHHHHHHHH-Hh-cCCcccccC
Confidence            99   9997        5999999 66 899998654

>PRK06023 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=8.7e-52  Score=391.02  Aligned_cols=243  Identities=21%  Similarity=0.314  Sum_probs=218.2

Q ss_pred             CcEEEEEeCC---EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhH
Q 016290           12 QVVLGEEIGN---VRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSC   88 (392)
Q Consensus        12 ~~V~~~~~~~---v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~   88 (392)
                      +.|.++++++   |++||||||+++|+||.+|+.+|.++++.++.|+++++|||+|.|++||+|+|++++.......   
T Consensus         3 ~~i~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~---   79 (251)
T PRK06023          3 DHILVERPGAHPGVQVIRFNRPEKKNAITRAMYATMAKALKAADADDAIRAHVFLGTEGCFSAGNDMQDFLAAAMGG---   79 (251)
T ss_pred             ceEEEEeecCcCcEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCeecCcCHHHHhhccccc---
Confidence            3588888874   9999999999999999999999999999999999999999999999999999999876421111   


Q ss_pred             HHHHHHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcch-HHHH
Q 016290           89 LEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HLGE  167 (392)
Q Consensus        89 ~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G-~~a~  167 (392)
                      ..+.....+++..|.++|||+||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|+|++| ..+.
T Consensus        80 ~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~la~acD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~~a~  159 (251)
T PRK06023         80 TSFGSEILDFLIALAEAEKPIVSGVDGLAIGIGTTIHLHCDLTFASPRSLFRTPFVDLALVPEAGSSLLAPRLMGHQRAF  159 (251)
T ss_pred             hhhHHHHHHHHHHHHhCCCCEEEEeCCceecHHHHHHHhCCEEEEeCCCEecCcccccCCCCCchHHHHHHHHHhHHHHH
Confidence            223334456788899999999999999999999999999999999999999999999999999999999999999 8999


Q ss_pred             HHhhcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHhCcCC
Q 016290          168 FLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKET  247 (392)
Q Consensus       168 ~L~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~~~  247 (392)
                      ++++||++++++||+++|||+++||.+++.+.+.+                                             
T Consensus       160 ~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~---------------------------------------------  194 (251)
T PRK06023        160 ALLALGEGFSAEAAQEAGLIWKIVDEEAVEAETLK---------------------------------------------  194 (251)
T ss_pred             HHHHhCCCCCHHHHHHcCCcceeeCHHHHHHHHHH---------------------------------------------
Confidence            99999999999999999999999998877654333                                             


Q ss_pred             HHHHHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHcCCccHHHHHHHHH
Q 016290          248 VAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGIRAL  327 (392)
Q Consensus       248 ~eei~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eGv~a~  327 (392)
                                            ++++|++.||.+++.+|++++... .++.+.+..|...+..++.+   +|++||+++|
T Consensus       195 ----------------------~a~~l~~~~~~a~~~~K~~l~~~~-~~l~~~~~~e~~~~~~~~~~---~~~~e~~~af  248 (251)
T PRK06023        195 ----------------------AAEELAAKPPQALQIARDLMRGPR-EDILARIDEEAKHFAARLKS---AEARAAFEAF  248 (251)
T ss_pred             ----------------------HHHHHHhCCHHHHHHHHHHHHhch-hhHHHHHHHHHHHHHHHhCC---HHHHHHHHHH
Confidence                                  378999999999999999999764 47899999999988999999   9999999999


Q ss_pred             H
Q 016290          328 T  328 (392)
Q Consensus       328 l  328 (392)
                      +
T Consensus       249 ~  249 (251)
T PRK06023        249 M  249 (251)
T ss_pred             h
Confidence            8

>PRK07854 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.2e-51  Score=388.05  Aligned_cols=240  Identities=22%  Similarity=0.264  Sum_probs=216.0

Q ss_pred             EEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhHHHHHH
Q 016290           14 VLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVY   93 (392)
Q Consensus        14 V~~~~~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~~~~~   93 (392)
                      |.++++++|++||||||+++|+||.+|+.+|.++++.+++| ++++|||||.|++||+|+|+++...       ...+..
T Consensus         2 ~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~~-~vr~vvl~g~g~~F~aG~Dl~~~~~-------~~~~~~   73 (243)
T PRK07854          2 IGVTRDGQVLTIELQRPERRNALNAELCEELREAVRKAVDE-SARAIVLTGQGTVFCAGADLSGDVY-------ADDFPD   73 (243)
T ss_pred             ceEEEeCCEEEEEeCCCccccCCCHHHHHHHHHHHHHHhcC-CceEEEEECCCCceecccCCccchh-------HHHHHH
Confidence            56788999999999999999999999999999999999865 8999999999999999999985211       123444


Q ss_pred             HHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcch-HHHHHHhhc
Q 016290           94 RMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HLGEFLALT  172 (392)
Q Consensus        94 ~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G-~~a~~L~lt  172 (392)
                      ..+++++.|.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++| ..+++|+||
T Consensus        74 ~~~~~~~~l~~~~kP~Iaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~~G~~~a~~l~lt  153 (243)
T PRK07854         74 ALIEMLHAIDAAPVPVIAAINGPAIGAGLQLAMACDLRVVAPEAYFQFPVAKYGIALDNWTIRRLSSLVGGGRARAMLLG  153 (243)
T ss_pred             HHHHHHHHHHhCCCCEEEEecCcccccHHHHHHhCCEEEEcCCCEEeccccccccCCCccHHHHHHHHhCHHHHHHHHHc
Confidence            5567888999999999999999999999999999999999999999999999999999999999999999 899999999


Q ss_pred             CCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHhCcCCHHHHH
Q 016290          173 GARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKETVAEII  252 (392)
Q Consensus       173 G~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~eei~  252 (392)
                      |++++|+||+++|||+++++   +. .+.                                                   
T Consensus       154 g~~~~a~eA~~~Glv~~v~~---~~-~a~---------------------------------------------------  178 (243)
T PRK07854        154 AEKLTAEQALATGMANRIGT---LA-DAQ---------------------------------------------------  178 (243)
T ss_pred             CCCcCHHHHHHCCCcccccC---HH-HHH---------------------------------------------------
Confidence            99999999999999999964   22 111                                                   


Q ss_pred             HHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHhccC
Q 016290          253 KSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGIRALTIEKD  332 (392)
Q Consensus       253 ~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eGv~a~l~dK~  332 (392)
                                      +++++|++.||.+++.+|+++++.  .++++.+..|......++.+   +|++||+++|+ +| 
T Consensus       179 ----------------~~a~~l~~~~~~a~~~~K~~l~~~--~~~~~~~~~e~~~~~~~~~~---~d~~eg~~af~-~k-  235 (243)
T PRK07854        179 ----------------AWAAEIAGLAPLALQHAKRVLNDD--GAIEEAWPAHKELFDKAWAS---QDAIEAQVARI-EK-  235 (243)
T ss_pred             ----------------HHHHHHHhCCHHHHHHHHHHHHcc--CCHHHHHHHHHHHHHHHhcC---chHHHHHHHHh-CC-
Confidence                            337889999999999999999976  67999999999999999999   99999999999 66 


Q ss_pred             CCCCCCC
Q 016290          333 NAPKWDP  339 (392)
Q Consensus       333 r~P~w~~  339 (392)
                      |+|.|++
T Consensus       236 r~p~~~~  242 (243)
T PRK07854        236 RPPKFQG  242 (243)
T ss_pred             CCCCCCC
Confidence            8999975

>PLN02921 naphthoate synthase

Probab=100.00  E-value=1.7e-51  Score=401.06  Aligned_cols=255  Identities=20%  Similarity=0.286  Sum_probs=219.3

Q ss_pred             CCCcEEEEE--eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCC-CccccCCCchhhccCCCC-c
Q 016290           10 DEQVVLGEE--IGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVG-RAFSAGGDLKMFYDGRNS-K   85 (392)
Q Consensus        10 ~~~~V~~~~--~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G-~~FcaG~Dl~~l~~~~~~-~   85 (392)
                      +++.|.+++  +++|++||||||+++|+||.+|+.+|.++++.++.|++|++|||+|.| ++||+|+|++++...... .
T Consensus        63 ~~~~i~~~~~~~~~Va~ItLnrP~~~Nal~~~~~~eL~~al~~~~~d~~vrvVVLtg~G~k~FcaG~Dl~~~~~~~~~~~  142 (327)
T PLN02921         63 EFTDIIYEKAVGEGIAKITINRPERRNAFRPRTVKELQRAFNDARDDSSVGVIILTGKGTKAFCSGGDQAVRGKDGYVGP  142 (327)
T ss_pred             CCceEEEEEecCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEecCCCCceecCcChhhhhcccccch
Confidence            466789988  589999999999999999999999999999999999999999999999 899999999987432111 1


Q ss_pred             hhHHHHHHHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcch-H
Q 016290           86 DSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-H  164 (392)
Q Consensus        86 ~~~~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G-~  164 (392)
                      .....+  ....+...|.+++|||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++| .
T Consensus       143 ~~~~~~--~~~~l~~~l~~~~kPvIAaVnG~a~GGG~~LalacD~riA~~~A~f~~pe~~~Gl~p~~gg~~~L~rliG~~  220 (327)
T PLN02921        143 DDAGRL--NVLDLQIQIRRLPKPVIAMVAGYAVGGGHILHMVCDLTIAADNAVFGQTGPKVGSFDAGYGSSIMARLVGQK  220 (327)
T ss_pred             hHHHHH--HHHHHHHHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEEeCCCEEeCcccccCCCCCccHHHHHHHHhCHH
Confidence            111111  1245677899999999999999999999999999999999999999999999999999999999999999 9


Q ss_pred             HHHHHhhcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHhC
Q 016290          165 LGEFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFS  244 (392)
Q Consensus       165 ~a~~L~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~  244 (392)
                      .+++|++||++++|+||+++||||++||.+++.+.+.++                                         
T Consensus       221 ~A~ellltG~~~~A~eA~~~GLV~~vv~~~~l~~~a~~~-----------------------------------------  259 (327)
T PLN02921        221 KAREMWFLARFYTASEALKMGLVNTVVPLDELEGETVKW-----------------------------------------  259 (327)
T ss_pred             HHHHHHHcCCcCCHHHHHHCCCceEEeCHHHHHHHHHHH-----------------------------------------
Confidence            999999999999999999999999999988776544433                                         


Q ss_pred             cCCHHHHHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHcCCccHHHHHH
Q 016290          245 KETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGI  324 (392)
Q Consensus       245 ~~~~eei~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eGv  324 (392)
                                                +++|+++||.+++.+|++++..... .......|...+..++.+   +|++||+
T Consensus       260 --------------------------a~~la~~~p~al~~~K~~l~~~~~~-~~~~~~~~~~~~~~~~~s---~d~~egi  309 (327)
T PLN02921        260 --------------------------CREILRNSPTAIRVLKSALNAADDG-HAGLQELGGNATLLFYGS---EEGNEGR  309 (327)
T ss_pred             --------------------------HHHHHccCHHHHHHHHHHHHHhhcc-hhHHHHHHHHHHHHHhcC---HHHHHHH
Confidence                                      7899999999999999999987543 333334445677777888   9999999


Q ss_pred             HHHHhccCCCCCCCC
Q 016290          325 RALTIEKDNAPKWDP  339 (392)
Q Consensus       325 ~a~l~dK~r~P~w~~  339 (392)
                      ++|+ +| |+|.|+.
T Consensus       310 ~Af~-ek-r~p~f~~  322 (327)
T PLN02921        310 TAYL-EG-RAPDFSK  322 (327)
T ss_pred             HHHh-cc-CCCCCCC
Confidence            9999 66 8999974

>PRK07938 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.7e-51  Score=388.39  Aligned_cols=242  Identities=21%  Similarity=0.261  Sum_probs=214.5

Q ss_pred             EEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhHHHHHHHHH
Q 016290           17 EEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMY   96 (392)
Q Consensus        17 ~~~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~~~~~~~~   96 (392)
                      +++++|++||||||++ |+||.+|+.+|.++++.++.|++|++|||+|.|++||+|+|++++..... ......+.+...
T Consensus         7 ~~~~~v~~itlnrp~~-Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~G~~F~aG~Dl~~~~~~~~-~~~~~~~~~~~~   84 (249)
T PRK07938          7 TPEPGIAEVTVDYPPV-NALPSAGWFALADAITAAGADPDTRVVVLRAEGRGFNAGVDIKELQATPG-FTALIDANRGCF   84 (249)
T ss_pred             ccCCCEEEEEECCCCc-ccCCHHHHHHHHHHHHHhhcCCCeEEEEEECCCCceecCcCHHHHhhccc-hhHHHHHHHHHH
Confidence            4578999999999985 99999999999999999999999999999999999999999998754211 111123334445


Q ss_pred             HHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcch-HHHHHHhhcCCc
Q 016290           97 WLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HLGEFLALTGAR  175 (392)
Q Consensus        97 ~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G-~~a~~L~ltG~~  175 (392)
                      +++..|.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++   |++++|+|++| ..+++|++||++
T Consensus        85 ~~~~~i~~~~kPvIAav~G~a~GgG~~Lal~cD~ria~~~a~f~~pe~~~G~~---g~~~~l~~~vg~~~a~~l~ltg~~  161 (249)
T PRK07938         85 AAFRAVYECAVPVIAAVHGFCLGGGIGLVGNADVIVASDDATFGLPEVDRGAL---GAATHLQRLVPQHLMRALFFTAAT  161 (249)
T ss_pred             HHHHHHHhCCCCEEEEEcCEEeehHHHHHHhCCEEEEeCCCEeeCccceecCc---hhHHHHHHhcCHHHHHHHHHhCCc
Confidence            67788999999999999999999999999999999999999999999999985   66788999999 899999999999


Q ss_pred             ccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHhCcCCHHHHHHHH
Q 016290          176 LNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKETVAEIIKSF  255 (392)
Q Consensus       176 l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~eei~~~l  255 (392)
                      ++|+||+++|||+++||++++.+.+.+                                                     
T Consensus       162 ~~a~eA~~~Glv~~vv~~~~l~~~a~~-----------------------------------------------------  188 (249)
T PRK07938        162 ITAAELHHFGSVEEVVPRDQLDEAALE-----------------------------------------------------  188 (249)
T ss_pred             CCHHHHHHCCCccEEeCHHHHHHHHHH-----------------------------------------------------
Confidence            999999999999999998877654443                                                     


Q ss_pred             HHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHhccCCCC
Q 016290          256 EAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGIRALTIEKDNAP  335 (392)
Q Consensus       256 ~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eGv~a~l~dK~r~P  335 (392)
                                    ++++|++.||.+++.+|++++.....++++.+..|......++.+   +|++||+++|+ +| |+|
T Consensus       189 --------------~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~---~d~~eg~~af~-ek-r~p  249 (249)
T PRK07938        189 --------------VARKIAAKDTRVIRAAKEALNGIDPQDVERSYRWEQGFTFELNLA---GVSDEHRDAFV-EK-RKA  249 (249)
T ss_pred             --------------HHHHHHhCCHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhcC---ccHHHHHHHHH-hc-CCC
Confidence                          378999999999999999999887888999999999999899999   99999999999 66 665

>PRK07112 polyketide biosynthesis enoyl-CoA hydratase; Validated

Probab=100.00  E-value=5.9e-51  Score=386.15  Aligned_cols=252  Identities=18%  Similarity=0.278  Sum_probs=218.9

Q ss_pred             CCCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhHH
Q 016290           10 DEQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCL   89 (392)
Q Consensus        10 ~~~~V~~~~~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~   89 (392)
                      +++.|.++.+++|++||||||++.|+||.+|+.+|.++++.++  +++++|||+|.|++||+|+|++++...........
T Consensus         2 ~~~~i~~~~~~~i~~itlnrp~~~Nal~~~~~~~L~~~l~~~~--~~vr~vVl~g~g~~FsaG~Dl~~~~~~~~~~~~~~   79 (255)
T PRK07112          2 DYQTIRVRQQGDVCFLQLHRPEAQNTINDRLIAECMDVLDRCE--HAATIVVLEGLPEVFCFGADFSAIAEKPDAGRADL   79 (255)
T ss_pred             CCceEEEEeeCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHhh--cCceEEEEEcCCCCcccCcCHHHHhhccccchhhh
Confidence            3567999999999999999999999999999999999999998  35999999999999999999998754211111111


Q ss_pred             HHHHHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcch-HHHHH
Q 016290           90 EVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HLGEF  168 (392)
Q Consensus        90 ~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G-~~a~~  168 (392)
                      ......+++++.|.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++| +.+|+|++| .++++
T Consensus        80 ~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~~-~~~l~~~vg~~~a~~  158 (255)
T PRK07112         80 IDAEPLYDLWHRLATGPYVTIAHVRGKVNAGGIGFVAASDIVIADETAPFSLSELLFGLIPACV-LPFLIRRIGTQKAHY  158 (255)
T ss_pred             hhHHHHHHHHHHHHcCCCCEEEEEecEEEcchhHHHHcCCEEEEcCCCEEeCchhhhccCcchh-hHHHHHHhCHHHHHH
Confidence            1233346788899999999999999999999999999999999999999999999999999875 467999999 99999


Q ss_pred             HhhcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHhCcCCH
Q 016290          169 LALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKETV  248 (392)
Q Consensus       169 L~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~  248 (392)
                      |++||++++|+||+++||||++||+++.  ...                                               
T Consensus       159 l~l~g~~~~a~eA~~~Glv~~vv~~~~~--~~~-----------------------------------------------  189 (255)
T PRK07112        159 MTLMTQPVTAQQAFSWGLVDAYGANSDT--LLR-----------------------------------------------  189 (255)
T ss_pred             HHHhCCcccHHHHHHcCCCceecCcHHH--HHH-----------------------------------------------
Confidence            9999999999999999999999986542  111                                               


Q ss_pred             HHHHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHH
Q 016290          249 AEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGIRALT  328 (392)
Q Consensus       249 eei~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eGv~a~l  328 (392)
                                          +.+++|++.+|.+++.+|++++.. ...+.+.+..|......++.+   +|++||+++|+
T Consensus       190 --------------------~~a~~l~~~~p~a~~~~K~~~~~~-~~~~~~~~~~e~~~~~~~~~~---~~~~eg~~af~  245 (255)
T PRK07112        190 --------------------KHLLRLRCLNKAAVARYKSYASTL-DDTVAAARPAALAANIEMFAD---PENLRKIARYV  245 (255)
T ss_pred             --------------------HHHHHHHhCCHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHcC---hHHHHHHHHHH
Confidence                                237899999999999999999975 457899999999999999999   99999999999


Q ss_pred             hccCCCCCCCC
Q 016290          329 IEKDNAPKWDP  339 (392)
Q Consensus       329 ~dK~r~P~w~~  339 (392)
                       +| |+|.|..
T Consensus       246 -~k-r~p~~~~  254 (255)
T PRK07112        246 -ET-GKFPWEA  254 (255)
T ss_pred             -cC-CCCCCCC
Confidence             56 8999974

>PF00378 ECH: Enoyl-CoA hydratase/isomerase family; InterPro: IPR001753 The crotonase superfamily is comprised of mechanistically diverse proteins that share a conserved trimeric quaternary structure (sometimes a hexamer consisting of a dimer of trimers), the core of which consists of 4 turns of a (beta/beta/alpha)n superhelix

Probab=100.00  E-value=2.3e-51  Score=386.77  Aligned_cols=244  Identities=32%  Similarity=0.488  Sum_probs=227.9

Q ss_pred             EEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhHHHHHHH
Q 016290           15 LGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYR   94 (392)
Q Consensus        15 ~~~~~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~~~~~~   94 (392)
                      .++.+++|++|+||||++.|+||.+|+.+|.++|+.++.|+++++||++|.|++||+|+|++++...  .......+...
T Consensus         1 ~~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvv~~~~~~~F~~G~Dl~~~~~~--~~~~~~~~~~~   78 (245)
T PF00378_consen    1 KYEIEDGVATITLNRPEKRNALNPEMLDELEEALDEAEADPDVKVVVISGGGKAFCAGADLKEFLNS--DEEEAREFFRR   78 (245)
T ss_dssp             EEEEETTEEEEEEECGGGTTEBSHHHHHHHHHHHHHHHHSTTESEEEEEESTSESBESB-HHHHHHH--HHHHHHHHHHH
T ss_pred             CEEEECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhcCCccEEEEeecccccccccchhhhhcc--ccccccccchh
Confidence            4789999999999999999999999999999999999999999999999999999999999998875  22334677788


Q ss_pred             HHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcch-HHHHHHhhcC
Q 016290           95 MYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HLGEFLALTG  173 (392)
Q Consensus        95 ~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G-~~a~~L~ltG  173 (392)
                      .+.+...+..+|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++| ..+.++++||
T Consensus        79 ~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~~~a~~l~l~g  158 (245)
T PF00378_consen   79 FQELLSRLANFPKPTIAAVNGHAVGGGFELALACDFRIAAEDAKFGFPEVRLGIFPGAGGTFRLPRLIGPSRARELLLTG  158 (245)
T ss_dssp             HHHHHHHHHHSSSEEEEEESSEEETHHHHHHHHSSEEEEETTTEEETGGGGGTSSSTSTHHHHHHHHHHHHHHHHHHHHT
T ss_pred             hccccccchhhhhheeecccccccccccccccccceEEeecccceeeeecccCcccccccccccceeeeccccccccccc
Confidence            899999999999999999999999999999999999999999999999999999999999999999999 8999999999


Q ss_pred             CcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHhCcCCHHHHHH
Q 016290          174 ARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKETVAEIIK  253 (392)
Q Consensus       174 ~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~eei~~  253 (392)
                      ++++|+||+++||+|+++|++++.+.+..+                                                  
T Consensus       159 ~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~--------------------------------------------------  188 (245)
T PF00378_consen  159 EPISAEEALELGLVDEVVPDEELDEEALEL--------------------------------------------------  188 (245)
T ss_dssp             CEEEHHHHHHTTSSSEEESGGGHHHHHHHH--------------------------------------------------
T ss_pred             ccchhHHHHhhcceeEEcCchhhhHHHHHH--------------------------------------------------
Confidence            999999999999999999999877644444                                                  


Q ss_pred             HHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHhcc
Q 016290          254 SFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGIRALTIEK  331 (392)
Q Consensus       254 ~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eGv~a~l~dK  331 (392)
                                       +++++..+|.+++.+|+.+++.....+.+.+..|...+..++.+   +|++||+++|+ +|
T Consensus       189 -----------------a~~l~~~~~~a~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~e~~~~f~-eK  245 (245)
T PF00378_consen  189 -----------------AKRLAAKPPSALRATKKALNRALEQSLEEALEFEQDLFAECFKS---EDFQEGIAAFL-EK  245 (245)
T ss_dssp             -----------------HHHHHTSCHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHTS---HHHHHHHHHHH-TT
T ss_pred             -----------------HHHHhcCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCC---HHHHHHHHHHh-Cc
Confidence                             78999999999999999999998889999999999999999999   99999999999 65

Some enzymes in the superfamily have been shown to display dehalogenase, hydratase, and isomerase activities, while others have been implicated in carbon-carbon bond formation and cleavage as well as the hydrolysis of thioesters []. However, these different enzymes share the need to stabilise an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two structurally conserved peptidic NH groups that provide hydrogen bonds to the carbonyl moieties of the acyl-CoA substrates and form an "oxyanion hole". The CoA thioester derivatives bind in a characteristic hooked shape and a conserved tunnel binds the pantetheine group of CoA, which links the 3'-phosphate ADP binding site to the site of reaction []. Enzymes in the crotonase superfamily include: Enoyl-CoA hydratase (crotonase; 4.2.1.17 from EC), which catalyses the hydratation of 2-trans-enoyl-CoA into 3-hydroxyacyl-CoA []. 3-2trans-enoyl-CoA isomerase (or dodecenoyl-CoA isomerise; 5.3.3.8 from EC), which shifts the 3-double bond of the intermediates of unsaturated fatty acid oxidation to the 2-trans position []. 3-hydroxbutyryl-CoA dehydratase (crotonase; 4.2.1.55 from EC), a bacterial enzyme involved in the butyrate/butanol-producing pathway. 4-Chlorobenzoyl-CoA dehalogenase (3.8.1.6 from EC), a Pseudomonas enzyme which catalyses the conversion of 4-chlorobenzoate-CoA to 4-hydroxybenzoate-CoA []. Dienoyl-CoA isomerise, which catalyses the isomerisation of 3-trans,5-cis-dienoyl-CoA to 2-trans,4-trans-dienoyl-CoA []. Naphthoate synthase (MenB, or DHNA synthetase; 4.1.3.36 from EC), a bacterial enzyme involved in the biosynthesis of menaquinone (vitamin K2) []. Carnitine racemase (gene caiD), which catalyses the reversible conversion of crotonobetaine to L-carnitine in Escherichia coli []. Methylmalonyl CoA decarboxylase (MMCD; 4.1.1.41 from EC), which has a hexameric structure (dimer of trimers) []. Carboxymethylproline synthase (CarB), which is involved in carbapenem biosynthesis []. 6-oxo camphor hydrolase, which catalyses the desymmetrisation of bicyclic beta-diketones to optically active keto acids []. The alpha subunit of fatty oxidation complex, a multi-enzyme complex that catalyses the last three reactions in the fatty acid beta-oxidation cycle []. AUH protein, a bifunctional RNA-binding homologue of enoyl-CoA hydratase []. This entry represents the core domain found in crotonase superfamily members.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2VRE_B 3RSI_A 1HZD_F 2ZQR_E 2ZQQ_D 3R9S_C 1O8U_E 1SZO_C 3MOY_A 2UZF_A ....

>PLN03214 probable enoyl-CoA hydratase/isomerase; Provisional

Probab=100.00  E-value=5.9e-51  Score=390.33  Aligned_cols=252  Identities=17%  Similarity=0.206  Sum_probs=223.0

Q ss_pred             CCCCCcEEEEE-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCC--CccccCCCchhhccCCCC
Q 016290            8 NPDEQVVLGEE-IGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVG--RAFSAGGDLKMFYDGRNS   84 (392)
Q Consensus         8 ~~~~~~V~~~~-~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G--~~FcaG~Dl~~l~~~~~~   84 (392)
                      +.....|.+++ +++|++||||||+ .|+||.+|+.+|.++|+.++.|+++++|||||.|  ++||+|+|++++......
T Consensus         7 ~~~~~~i~~~~~~~~Va~itlnr~~-~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~~~FcaG~Dl~~~~~~~~~   85 (278)
T PLN03214          7 PGATPGVRVDRRPGGIAVVWLAKEP-VNSMTLAMWRSLDDALTALENDPTVRGVVFASGLRRDVFTAGNDIAELYAPKTS   85 (278)
T ss_pred             CCCCCceEEEEcCCCEEEEEECCCC-CCCCCHHHHHHHHHHHHHHHcCCCceEEEEeCCCCCCcccCccCHHHHhccccc
Confidence            44556799998 6999999999985 6999999999999999999999999999999998  799999999987532111


Q ss_pred             chhHHHHHHHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCc-cCCchhHHHHhhcch
Q 016290           85 KDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGF-HTDCGFSFIHSRLPG  163 (392)
Q Consensus        85 ~~~~~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl-~P~~G~s~~L~rl~G  163 (392)
                      ......++.....++..|.++||||||+|||+|+|||++|+++|||||++++++|++||+++|+ +|++|++++|+|++|
T Consensus        86 ~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~ria~~~a~f~~pe~~lGl~~p~~~~~~~l~~~~G  165 (278)
T PLN03214         86 AARYAEFWLTQTTFLVRLLRSRLATVCAIRGACPAGGCAVSLCCDYRLQTTEGTMGLNEVALGIPVPKFWARLFMGRVID  165 (278)
T ss_pred             hHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCcccchHHHHHHhCCEEEecCCCEecCcHHHhCCCCCChhHHHHHHHhcC
Confidence            1112344444456778899999999999999999999999999999999999999999999999 599999999999999


Q ss_pred             -HHHHHHhhcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHH
Q 016290          164 -HLGEFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDEC  242 (392)
Q Consensus       164 -~~a~~L~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~  242 (392)
                       ..+++|+|||++++++||+++||||++||.+++.+.+.                                         
T Consensus       166 ~~~a~~llltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~-----------------------------------------  204 (278)
T PLN03214        166 RKVAESLLLRGRLVRPAEAKQLGLIDEVVPAAALMEAAA-----------------------------------------  204 (278)
T ss_pred             HHHHHHHHHcCCccCHHHHHHcCCCcEecChHHHHHHHH-----------------------------------------
Confidence             99999999999999999999999999999877664333                                         


Q ss_pred             hCcCCHHHHHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHcCCccHHHH
Q 016290          243 FSKETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYE  322 (392)
Q Consensus       243 f~~~~~eei~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~e  322 (392)
                                                +++++|++.+|.+++.+|+++++....++++++..|.+.+..++.+   +|++|
T Consensus       205 --------------------------~~a~~l~~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s---~d~~e  255 (278)
T PLN03214        205 --------------------------SAMERALKLPSAARAATKALLREEFSAAWEAYYEEEAKGGWKMLSE---PSIIK  255 (278)
T ss_pred             --------------------------HHHHHHHcCCHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhCC---HHHHH
Confidence                                      3378999999999999999999988889999999999999889999   99999


Q ss_pred             HHHHHHhcc
Q 016290          323 GIRALTIEK  331 (392)
Q Consensus       323 Gv~a~l~dK  331 (392)
                      |+++|+ +|
T Consensus       256 gi~afl-ek  263 (278)
T PLN03214        256 ALGGVM-ER  263 (278)
T ss_pred             HHHHHH-HH
Confidence            999999 55

>PRK08321 naphthoate synthase; Validated

Probab=100.00  E-value=1.5e-50  Score=391.82  Aligned_cols=256  Identities=20%  Similarity=0.231  Sum_probs=219.2

Q ss_pred             CCcEEEEE--eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCC-------CccccCCCchhhccC
Q 016290           11 EQVVLGEE--IGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVG-------RAFSAGGDLKMFYDG   81 (392)
Q Consensus        11 ~~~V~~~~--~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G-------~~FcaG~Dl~~l~~~   81 (392)
                      +.+|.+++  +++|++||||||+++|+||.+|+.+|.++++.++.|++|++|||||.|       ++||+|+|++++...
T Consensus        22 ~~~i~~~~~~~~~va~itlnrP~~~Nal~~~~~~~l~~al~~~~~d~~vrvvVltg~g~~~~~~~~~FcaG~Dl~~~~~~  101 (302)
T PRK08321         22 FTDITYHRAVDQGTVRIAFDRPEVRNAFRPHTVDELYRALDHARMSPDVGCVLLTGNGPSPKDGGWAFCSGGDQRIRGRD  101 (302)
T ss_pred             ceeEEEEEecCCCEEEEEeCCcccccCCCHHHHHHHHHHHHHHhhCCCcEEEEEeCCCCCCCCCCCeeecCcChhhhccc
Confidence            45688888  899999999999999999999999999999999999999999999998       599999999976321


Q ss_pred             C----C-Cc-h--hHHHHH-HHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEe-CCeeeeccccccCccCC
Q 016290           82 R----N-SK-D--SCLEVV-YRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVT-EKTVFSTPEASIGFHTD  151 (392)
Q Consensus        82 ~----~-~~-~--~~~~~~-~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riat-e~a~f~~PE~~iGl~P~  151 (392)
                      .    . .. .  ...... ...+.+...|..+|||+||+|||+|+|||++|+++||+|||+ ++++|++||+++|++|+
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pkP~IAaV~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~~Gl~p~  181 (302)
T PRK08321        102 GYQYAEGDEADTVDPARAGRLHILEVQRLIRFMPKVVIAVVPGWAAGGGHSLHVVCDLTLASREHARFKQTDADVGSFDG  181 (302)
T ss_pred             cccccccccccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEcCeeehHHHHHHHhCCEEEEecCCCEEECCccccccCCC
Confidence            0    0 00 0  001111 112346677899999999999999999999999999999999 69999999999999999


Q ss_pred             chhHHHHhhcch-HHHHHHhhcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChh
Q 016290          152 CGFSFIHSRLPG-HLGEFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQ  230 (392)
Q Consensus       152 ~G~s~~L~rl~G-~~a~~L~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~  230 (392)
                      +|++++|+|++| ..+.+|+|||++++|+||+++||||++||++++.+.+.++                           
T Consensus       182 ~~~~~~L~r~vG~~~A~~l~ltG~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~---------------------------  234 (302)
T PRK08321        182 GYGSAYLARQVGQKFAREIFFLGRTYSAEEAHDMGAVNAVVPHAELETEALEW---------------------------  234 (302)
T ss_pred             chHHHHHHHHhCHHHHHHHHHcCCccCHHHHHHCCCceEeeCHHHHHHHHHHH---------------------------
Confidence            999999999999 8999999999999999999999999999988877544433                           


Q ss_pred             hHHHHHHHHHHHhCcCCHHHHHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHHHH
Q 016290          231 SVLNKQSIIDECFSKETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTIN  310 (392)
Q Consensus       231 ~~~~~~~~i~~~f~~~~~eei~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~  310 (392)
                                                              +++|++.+|.+++.+|++++.... .+.+....|...+..
T Consensus       235 ----------------------------------------a~~la~~~~~a~~~~K~~l~~~~~-~~~~~~~~e~~~~~~  273 (302)
T PRK08321        235 ----------------------------------------AREINGKSPTAMRMLKYAFNLTDD-GLVGQQLFAGEATRL  273 (302)
T ss_pred             ----------------------------------------HHHHHhCCHHHHHHHHHHHHhhhc-ccHHHHHHHHHHHHH
Confidence                                                    789999999999999999987655 344445568888888


Q ss_pred             HHHcCCccHHHHHHHHHHhccCCCCCCCC
Q 016290          311 ILRAIISADIYEGIRALTIEKDNAPKWDP  339 (392)
Q Consensus       311 ~~~~~~~~d~~eGv~a~l~dK~r~P~w~~  339 (392)
                      ++.+   +|++||+++|+ +| |+|.|+.
T Consensus       274 ~~~~---~d~~egi~af~-ek-r~p~~~~  297 (302)
T PRK08321        274 AYMT---DEAQEGRDAFL-EK-RDPDWSD  297 (302)
T ss_pred             HhcC---HHHHHHHHHHh-cc-CCCCCCC
Confidence            8888   99999999999 56 8999975

>PRK07110 polyketide biosynthesis enoyl-CoA hydratase; Validated

Probab=100.00  E-value=1.5e-50  Score=382.01  Aligned_cols=245  Identities=20%  Similarity=0.267  Sum_probs=223.0

Q ss_pred             CCCCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhH
Q 016290            9 PDEQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSC   88 (392)
Q Consensus         9 ~~~~~V~~~~~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~   88 (392)
                      +.++.++++.+++|++|+||||+++|+||.+|+.+|.+++++++.|+++++|||+|.|++||+|+|++++.....+.   
T Consensus         2 ~~~~~~~~~~~~~v~~i~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~---   78 (249)
T PRK07110          2 MMKVVELREVEEGIAQVTMQDRVNKNAFSDELCDQLHEAFDTIAQDPRYKVVILTGYPNYFATGGTQEGLLSLQTGK---   78 (249)
T ss_pred             CCCceEEEEeeCCEEEEEecCCCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCeeCCcChHHHhhccchh---
Confidence            55678899999999999999999999999999999999999999999999999999999999999999876432211   


Q ss_pred             HHHHHHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcch-HHHH
Q 016290           89 LEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HLGE  167 (392)
Q Consensus        89 ~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G-~~a~  167 (392)
                      .. +.. ..++..+.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++| ..+.
T Consensus        79 ~~-~~~-~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~~a~  156 (249)
T PRK07110         79 GT-FTE-ANLYSLALNCPIPVIAAMQGHAIGGGLVLGLYADIVVLSRESVYTANFMKYGFTPGMGATAILPEKLGLALGQ  156 (249)
T ss_pred             hh-Hhh-HHHHHHHHcCCCCEEEEecCceechHHHHHHhCCEEEEeCCCEecCchhccCCCCCchHHHHHHHHhCHHHHH
Confidence            12 222 56788899999999999999999999999999999999999999999999999999999999999999 8999


Q ss_pred             HHhhcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHhCcCC
Q 016290          168 FLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKET  247 (392)
Q Consensus       168 ~L~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~~~  247 (392)
                      ++++||++++++||+++||++++||++++.+.+.                                              
T Consensus       157 ~llltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~----------------------------------------------  190 (249)
T PRK07110        157 EMLLTARYYRGAELKKRGVPFPVLPRAEVLEKAL----------------------------------------------  190 (249)
T ss_pred             HHHHcCCccCHHHHHHcCCCeEEeChHHHHHHHH----------------------------------------------
Confidence            9999999999999999999999999887765333                                              


Q ss_pred             HHHHHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHcCCccHHHHHHHHH
Q 016290          248 VAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGIRAL  327 (392)
Q Consensus       248 ~eei~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eGv~a~  327 (392)
                                           +.+++|++.||.+++.+|++++.....++.+.++.|...+..++.+   +|++|||++.
T Consensus       191 ---------------------~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~---~~~~egi~~~  246 (249)
T PRK07110        191 ---------------------ELARSLAEKPRHSLVLLKDHLVADRRRRLPEVIEQEVAMHEKTFHQ---PEVKRRIESL  246 (249)
T ss_pred             ---------------------HHHHHHHhCCHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHhCC---HhHHHHHHHh
Confidence                                 3378999999999999999999998899999999999999999999   9999999986


Q ss_pred             H
Q 016290          328 T  328 (392)
Q Consensus       328 l  328 (392)
                      -
T Consensus       247 ~  247 (249)
T PRK07110        247 Y  247 (249)
T ss_pred             c
Confidence            3

>PRK06190 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=6.5e-50  Score=379.18  Aligned_cols=251  Identities=23%  Similarity=0.313  Sum_probs=219.1

Q ss_pred             CCCCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhH
Q 016290            9 PDEQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSC   88 (392)
Q Consensus         9 ~~~~~V~~~~~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~   88 (392)
                      |+++.|.++.+++|++||||||+++|+||.+|+.+|.++|+.++.|++|++|||+|.|++||+|+|++++..... ..  
T Consensus         1 ~~~~~v~~~~~~~va~Itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~-~~--   77 (258)
T PRK06190          1 MTEPILLVETHDRVRTLTLNRPEARNALSAALRRALFAALAEADADDDVDVVVLTGADPAFCAGLDLKELGGDGS-AY--   77 (258)
T ss_pred             CCCceEEEEeeCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCccCCcCHHHHhcccc-hh--
Confidence            355679999999999999999999999999999999999999999999999999999999999999999864211 11  


Q ss_pred             HHHHHHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcch-HHHH
Q 016290           89 LEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HLGE  167 (392)
Q Consensus        89 ~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G-~~a~  167 (392)
                      .. ......++..|.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++| ..++
T Consensus        78 ~~-~~~~~~~~~~i~~~~kPvIAaV~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~  156 (258)
T PRK06190         78 GA-QDALPNPSPAWPAMRKPVIGAINGAAVTGGLELALACDILIASERARFADTHARVGILPGWGLSVRLPQKVGIGRAR  156 (258)
T ss_pred             hH-HHHHHHHHHHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEeCCCEEECcccccCcCCCccHHHHHHHHhCHHHHH
Confidence            11 223456788899999999999999999999999999999999999999999999999999999999999999 8999


Q ss_pred             HHhhcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHhCcCC
Q 016290          168 FLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKET  247 (392)
Q Consensus       168 ~L~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~~~  247 (392)
                      +|++||++++|+||+++||||++||++++.+.+.+                                             
T Consensus       157 ~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~---------------------------------------------  191 (258)
T PRK06190        157 RMSLTGDFLDAADALRAGLVTEVVPHDELLPRARR---------------------------------------------  191 (258)
T ss_pred             HHHHhCCccCHHHHHHcCCCeEecCHhHHHHHHHH---------------------------------------------
Confidence            99999999999999999999999998877654333                                             


Q ss_pred             HHHHHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHcCCccHHHHHHHHH
Q 016290          248 VAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGIRAL  327 (392)
Q Consensus       248 ~eei~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eGv~a~  327 (392)
                                            ++++|+++||.+++.+|++++.....++.+.+..|...+..++.+. ++++..-++.-
T Consensus       192 ----------------------~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~-~~~~~~~~~~~  248 (258)
T PRK06190        192 ----------------------LAASIAGNNPAAVRALKASYDDGAAAQTGDALALEAEAARAHNRSV-SPDGIAARREA  248 (258)
T ss_pred             ----------------------HHHHHHcCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHcCC-ChHHHHHHHHH
Confidence                                  3789999999999999999999888899999999999999988873 34444434333


Q ss_pred             Hhcc
Q 016290          328 TIEK  331 (392)
Q Consensus       328 l~dK  331 (392)
                      ++.+
T Consensus       249 ~~~~  252 (258)
T PRK06190        249 VMAR  252 (258)
T ss_pred             HHHh
Confidence            3344

>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase

Probab=100.00  E-value=1.8e-48  Score=400.10  Aligned_cols=253  Identities=13%  Similarity=0.083  Sum_probs=223.2

Q ss_pred             EEEEEeCCEEEEEEcCCCCC-------------CCCCHHHHHHHHHHHHHHhh-CCCceEEEEEcCCCc-cccCCCchhh
Q 016290           14 VLGEEIGNVRLVTLNRPRQL-------------NVISSKVVSLLAEYLEKWEK-DDQAKLVIVKGVGRA-FSAGGDLKMF   78 (392)
Q Consensus        14 V~~~~~~~v~~itLnrp~~l-------------Nal~~~m~~~L~~~l~~~~~-d~~v~~Vvl~g~G~~-FcaG~Dl~~l   78 (392)
                      |.++++++|++||||||+++             |+||.+|+.+|.+++..++. |++|++|||||.|++ ||+|+|++..
T Consensus       260 v~~~~~~~va~itlnrP~~~~~~~~~~~~~~~~Nal~~~~~~~L~~a~~~~~~~d~~vr~vVl~g~G~~~F~aG~Dl~~~  339 (546)
T TIGR03222       260 VAIDRAARTATITLKGPKAAQPADIAAIVAQGANWWPLKLARELDDAILHLRTNELDIGLWVFRTQGDAELVLAADALLE  339 (546)
T ss_pred             EEEeccCCEEEEEecChhhcCccccccccccccCcCCHHHHHHHHHHHHHHhhCCCCeEEEEEEcCCCCceecCcCcccc
Confidence            44566899999999999999             99999999999999999984 599999999999976 9999999842


Q ss_pred             ccCCCCchhHHHHHHHHHHHHHHHHhcCCeEEEEe-cCceeccc-ccccccCceEEE-------eCCeeeeccccccCcc
Q 016290           79 YDGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALA-HGITMGGG-ASLMVPLKFSVV-------TEKTVFSTPEASIGFH  149 (392)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IA~v-~G~a~GgG-~~lal~~d~ria-------te~a~f~~PE~~iGl~  149 (392)
                      ..  .+.......+....+++..|..++||+||+| ||+|+||| ++|+++||+||+       +++++|++||+++|++
T Consensus       340 ~~--~~~~~~~~~~~~~~~~~~~l~~~~kpviAav~~G~a~GgG~~eLalacD~~ia~~~~~~~~~~a~f~~~e~~lGl~  417 (546)
T TIGR03222       340 AH--KDHWFVRETIGYLRRTLARLDVSSRSLFALIEPGSCFAGTLAELAFAADRSYMLAFPDNNDPEPAITLSELNFGLY  417 (546)
T ss_pred             cc--ccchhHHHHHHHHHHHHHHHHcCCCCEEEEECCCeEeHHHHHHHHHhCceeeecCCCCCCCCCCEEeCCccccccC
Confidence            21  1111112333333457889999999999999 89999999 999999999999       8999999999999999


Q ss_pred             CCchhHHHHhhcc-h-HHH--HHHhhcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhccc
Q 016290          150 TDCGFSFIHSRLP-G-HLG--EFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDV  225 (392)
Q Consensus       150 P~~G~s~~L~rl~-G-~~a--~~L~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~  225 (392)
                      |++|++++|+|++ | .++  ..+++||++++|+||+++|||+++||++++.+.+.++                      
T Consensus       418 p~~gg~~~L~~~v~G~~~a~~~~~~ltg~~i~A~eA~~~Glv~~vv~~~~l~~~a~~~----------------------  475 (546)
T TIGR03222       418 PMVNGLSRLATRFYAEPAPVAAVRDKIGQALDAEEAERLGLVTAAPDDIDWEDEIRIA----------------------  475 (546)
T ss_pred             CCcCcHHHHHHHhcCchhHHHHHHHHhCCCCCHHHHHHcCCcccccCchHHHHHHHHH----------------------
Confidence            9999999999998 8 777  5599999999999999999999999998887644433                      


Q ss_pred             CCChhhHHHHHHHHHHHhCcCCHHHHHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHH-HHHH
Q 016290          226 QLDGQSVLNKQSIIDECFSKETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAEC-LKKE  304 (392)
Q Consensus       226 ~~~~~~~~~~~~~i~~~f~~~~~eei~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~-l~~E  304 (392)
                                                                   +++|+++||.+++.+|++++.+...++++. +..|
T Consensus       476 ---------------------------------------------a~~la~~~p~a~~~~K~~l~~~~~~~~~~~~~~~e  510 (546)
T TIGR03222       476 ---------------------------------------------LEERASFSPDALTGLEANLRFAGPETMETRIFGRL  510 (546)
T ss_pred             ---------------------------------------------HHHHHhcCHHHHHHHHHHHhhcCCcChhhhHHHHH
Confidence                                                         789999999999999999999999999999 9999


Q ss_pred             HHHHHHHHHcCCccHHHH---HHHHHHhccCCCCCCCCC
Q 016290          305 FRLTINILRAIISADIYE---GIRALTIEKDNAPKWDPP  340 (392)
Q Consensus       305 ~~~~~~~~~~~~~~d~~e---Gv~a~l~dK~r~P~w~~~  340 (392)
                      ...+..++.+   +|.+|   |++||+ +| |+|+|+-.
T Consensus       511 ~~~~~~~~~~---~d~~e~~~g~~af~-ek-r~p~f~~~  544 (546)
T TIGR03222       511 TAWQNWIFNR---PNAVGENGALKVYG-SG-KKAQFDME  544 (546)
T ss_pred             HHHHHHHhcC---CcccchhhHHHHHc-cC-CCCCCCcc
Confidence            9999999999   99999   999999 66 89999754

In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.

>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional

Probab=100.00  E-value=3.9e-48  Score=398.81  Aligned_cols=253  Identities=12%  Similarity=0.061  Sum_probs=222.1

Q ss_pred             EEEEeCCEEEEEEcCCCCC-------------CCCCHHHHHHHHHHHHHHhh-CCCceEEEEEcCC-CccccCCCchhhc
Q 016290           15 LGEEIGNVRLVTLNRPRQL-------------NVISSKVVSLLAEYLEKWEK-DDQAKLVIVKGVG-RAFSAGGDLKMFY   79 (392)
Q Consensus        15 ~~~~~~~v~~itLnrp~~l-------------Nal~~~m~~~L~~~l~~~~~-d~~v~~Vvl~g~G-~~FcaG~Dl~~l~   79 (392)
                      .++++++|++||||||+++             |+||.+|+.+|.++++.++. |++||+|||||.| ++||+|+|++...
T Consensus       265 ~~~~~~~va~itlnrP~~~Na~~~~~~~~~~~Nal~~~~~~eL~~al~~~~~~d~~vr~vVltg~G~~~F~aG~Dl~~~~  344 (550)
T PRK08184        265 EIDRAARTATITVKAPTAAQPADIAGIVAAGAAWWPLQMARELDDAILHLRTNELDIGTWVLKTEGDAAAVLAADATLLA  344 (550)
T ss_pred             EEEccCCEEEEEEeCcccccccccccccccccccCCHHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCCcEEeCCChhhhc
Confidence            3345689999999999998             68999999999999999986 7999999999999 5999999987322


Q ss_pred             cCCCCchhHHHHHHHHHHHHHHHHhcCCeEEEEec-Cceeccc-ccccccCceEEEe-------CCeeeeccccccCccC
Q 016290           80 DGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALAH-GITMGGG-ASLMVPLKFSVVT-------EKTVFSTPEASIGFHT  150 (392)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IA~v~-G~a~GgG-~~lal~~d~riat-------e~a~f~~PE~~iGl~P  150 (392)
                       ... .......+.....++..|..+||||||+|| |+|+||| ++|+++||+|||+       ++++|++||+++|++|
T Consensus       345 -~~~-~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~~G~a~GgG~~eLalacD~~ia~~~~~~~~~~a~f~~pe~~~Gl~p  422 (550)
T PRK08184        345 -HKD-HWLVRETRGYLRRTLKRLDVTSRSLFALIEPGSCFAGTLAELALAADRSYMLALPDDNDPAPAITLSALNFGLYP  422 (550)
T ss_pred             -ccc-hHHHHHHHHHHHHHHHHHHhCCCCEEEEECCCceehhHHHHHHHHCChhhhcCCCCCCCCCCEEECccccccCCC
Confidence             111 111123333344577889999999999997 9999999 9999999999999       9999999999999999


Q ss_pred             CchhHHHHhhc-ch-HHHHHH--hhcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccC
Q 016290          151 DCGFSFIHSRL-PG-HLGEFL--ALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQ  226 (392)
Q Consensus       151 ~~G~s~~L~rl-~G-~~a~~L--~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~  226 (392)
                      ++|++++|+|+ +| .+++++  ++||++++|+||+++||||++||++++.+.+..+                       
T Consensus       423 ~~gg~~~L~r~~vG~~~A~~~~l~~tg~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~-----------------------  479 (550)
T PRK08184        423 MVNGLSRLARRFYGEPDPLAAVRAKIGQPLDADAAEELGLVTAAPDDIDWEDEVRIA-----------------------  479 (550)
T ss_pred             CCCcHHHhHHHhcChHHHHHHHHHHhCCcCCHHHHHHcCCcccccChHHHHHHHHHH-----------------------
Confidence            99999999988 69 888886  5999999999999999999999998887644444                       


Q ss_pred             CChhhHHHHHHHHHHHhCcCCHHHHHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHH-HHHHH
Q 016290          227 LDGQSVLNKQSIIDECFSKETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAEC-LKKEF  305 (392)
Q Consensus       227 ~~~~~~~~~~~~i~~~f~~~~~eei~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~-l~~E~  305 (392)
                                                                  +++|+++||.+++.+|++++.+...+++++ +..|.
T Consensus       480 --------------------------------------------a~~ia~~~p~a~~~~K~~l~~~~~~~~~~~~~~~e~  515 (550)
T PRK08184        480 --------------------------------------------LEERASLSPDALTGMEANLRFAGPETMETRIFGRLT  515 (550)
T ss_pred             --------------------------------------------HHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence                                                        789999999999999999999999999999 99999


Q ss_pred             HHHHHHHHcCCccHHHH---HHHHHHhccCCCCCCCCCC
Q 016290          306 RLTINILRAIISADIYE---GIRALTIEKDNAPKWDPPT  341 (392)
Q Consensus       306 ~~~~~~~~~~~~~d~~e---Gv~a~l~dK~r~P~w~~~~  341 (392)
                      ..+..++.+   +|.+|   |+++|+ +| |+|+|+..+
T Consensus       516 ~~~~~~~~~---~d~~e~~~g~~af~-ek-r~~~f~~~~  549 (550)
T PRK08184        516 AWQNWIFQR---PNAVGEKGALKVYG-TG-QKAQFDWNR  549 (550)
T ss_pred             HHHHHHhcC---CcccccchHHHHhc-cC-CCCCCCCCC
Confidence            999999999   99999   999999 66 999998754

>PRK05869 enoyl-CoA hydratase; Validated

Probab=100.00  E-value=3.5e-47  Score=352.95  Aligned_cols=205  Identities=18%  Similarity=0.235  Sum_probs=184.2

Q ss_pred             eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhHHHHHHHHHHH
Q 016290           19 IGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYWL   98 (392)
Q Consensus        19 ~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~~~~~~~~~l   98 (392)
                      +++|++||||||++ |+||.+|+.+|.++++.++.|+++++|||||.|++||+|+|++++.....  .....+++...++
T Consensus        15 ~~~i~~itlnrp~~-Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~--~~~~~~~~~~~~~   91 (222)
T PRK05869         15 DAGLATLLLSRPPT-NALTRQVYREIVAAANELGRRDDVAAVILYGGHEIFSAGDDMPELRTLSA--QEADTAARVRQQA   91 (222)
T ss_pred             cCCEEEEEECCCCC-CCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcCcCcCHHHHhccCh--hhHHHHHHHHHHH
Confidence            48999999999986 99999999999999999999999999999999999999999999754221  1112334444678


Q ss_pred             HHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcch-HHHHHHhhcCCccc
Q 016290           99 CHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HLGEFLALTGARLN  177 (392)
Q Consensus        99 ~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G-~~a~~L~ltG~~l~  177 (392)
                      +..|.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++| ..++++++||++++
T Consensus        92 ~~~i~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~ig~~~a~~l~ltg~~~~  171 (222)
T PRK05869         92 VDAVAAIPKPTVAAITGYALGAGLTLALAADWRVSGDNVKFGATEILAGLAPSGDGMARLTRAAGPSRAKELVFSGRFFD  171 (222)
T ss_pred             HHHHHhCCCCEEEEEcCEeecHHHHHHHhCCEEEecCCCEEcCchhccCCCCCccHHHHHHHHhCHHHHHHHHHcCCCcC
Confidence            88999999999999999999999999999999999999999999999999999999999999999 89999999999999


Q ss_pred             HHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHhCcCCHHHHHHHHHH
Q 016290          178 GKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKETVAEIIKSFEA  257 (392)
Q Consensus       178 a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~eei~~~l~~  257 (392)
                      |+||+++||+|+++|++++.+.+.                                                        
T Consensus       172 a~eA~~~Glv~~vv~~~~l~~~a~--------------------------------------------------------  195 (222)
T PRK05869        172 AEEALALGLIDEMVAPDDVYDAAA--------------------------------------------------------  195 (222)
T ss_pred             HHHHHHCCCCCEeeCchHHHHHHH--------------------------------------------------------
Confidence            999999999999999887765433                                                        


Q ss_pred             hhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhh
Q 016290          258 EAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGR  293 (392)
Q Consensus       258 ~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~  293 (392)
                                 +.+++|+..+|.+++.+|+++++..
T Consensus       196 -----------~~a~~ia~~~~~a~~~~K~~~~~~~  220 (222)
T PRK05869        196 -----------AWARRFLDGPPHALAAAKAGISDVY  220 (222)
T ss_pred             -----------HHHHHHHcCCHHHHHHHHHHHHHHh
Confidence                       3378999999999999999999764

>PRK08290 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.2e-46  Score=362.18  Aligned_cols=235  Identities=24%  Similarity=0.350  Sum_probs=203.7

Q ss_pred             CCCCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCC-C---
Q 016290            9 PDEQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRN-S---   84 (392)
Q Consensus         9 ~~~~~V~~~~~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~-~---   84 (392)
                      +++..|.++.+++|++||||||+++|+||.+|+.+|.++++.++.|++|++|||||.|++||+|+|++++..... .   
T Consensus         1 ~~~~~v~~~~~~~Va~ItlnrP~~~Nal~~~~~~eL~~~l~~~~~d~~vrvvVltg~G~~FcaG~Dl~~~~~~~~~~~~~   80 (288)
T PRK08290          1 MEYEYVRYEVAGRIARITLNRPEARNAQNRQMLYELDAAFRRAEADDAVRVIVLAGAGKHFSAGHDLGSGTPGRDRDPGP   80 (288)
T ss_pred             CCCceEEEEeeCCEEEEEecCccccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCccccCCCcccccccccccccc
Confidence            356679999999999999999999999999999999999999999999999999999999999999998742111 0   


Q ss_pred             -------------ch---hHHHHHHHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCc
Q 016290           85 -------------KD---SCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGF  148 (392)
Q Consensus        85 -------------~~---~~~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl  148 (392)
                                   ..   ...........+...|.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pkPvIAaVnG~a~GgG~~lalacD~ria~e~a~f~~pe~~lGl  160 (288)
T PRK08290         81 DQHPTLWWDGATKPGVEQRYAREWEVYLGMCRRWRDLPKPTIAQVQGACIAGGLMLAWVCDLIVASDDAFFSDPVVRMGI  160 (288)
T ss_pred             ccccccccccccccchhhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeeHHHHHHHHhCCEEEeeCCCEecCcccccCc
Confidence                         00   01111223345677889999999999999999999999999999999999999999999998


Q ss_pred             cCCchhHHHHhhcch-HHHHHHhhcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCC
Q 016290          149 HTDCGFSFIHSRLPG-HLGEFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQL  227 (392)
Q Consensus       149 ~P~~G~s~~L~rl~G-~~a~~L~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~  227 (392)
                       |+ +++++++|++| ..+++|+|||++++|+||+++||||++||++++.+.+.+                         
T Consensus       161 -~~-~~~~~l~~~iG~~~A~~llltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~-------------------------  213 (288)
T PRK08290        161 -PG-VEYFAHPWELGPRKAKELLFTGDRLTADEAHRLGMVNRVVPRDELEAETLE-------------------------  213 (288)
T ss_pred             -Cc-chHHHHHHHhhHHHHHHHHHcCCCCCHHHHHHCCCccEeeCHHHHHHHHHH-------------------------
Confidence             54 45778899999 999999999999999999999999999998877654433                         


Q ss_pred             ChhhHHHHHHHHHHHhCcCCHHHHHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhc-CHHHHHHHHHH
Q 016290          228 DGQSVLNKQSIIDECFSKETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQ-SLAECLKKEFR  306 (392)
Q Consensus       228 ~~~~~~~~~~~i~~~f~~~~~eei~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~-~l~~~l~~E~~  306 (392)
                                                                ++++|++.||.+++.+|++++..... ++++++..|..
T Consensus       214 ------------------------------------------~a~~la~~~~~a~~~~K~~~~~~~~~~~~~~~~~~~~~  251 (288)
T PRK08290        214 ------------------------------------------LARRIAAMPPFGLRLTKRAVNQTLDAQGFRAALDAVFD  251 (288)
T ss_pred             ------------------------------------------HHHHHHhCCHHHHHHHHHHHHHHHhhccHHHHHHHHHH
Confidence                                                      37899999999999999999988764 79999999999


Q ss_pred             HHHHHH
Q 016290          307 LTINIL  312 (392)
Q Consensus       307 ~~~~~~  312 (392)
                      .....+
T Consensus       252 ~~~~~~  257 (288)
T PRK08290        252 LHQLGH  257 (288)
T ss_pred             HHHHcc
Confidence            988877

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=100.00  E-value=3.6e-46  Score=397.99  Aligned_cols=284  Identities=16%  Similarity=0.200  Sum_probs=224.7

Q ss_pred             cEEEEE-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCC-CCchhHHH
Q 016290           13 VVLGEE-IGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGR-NSKDSCLE   90 (392)
Q Consensus        13 ~V~~~~-~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~-~~~~~~~~   90 (392)
                      .|.++. +++|++||||||+++|+||.+|+.+|.++++.++.|++|++|||||+|++||+|+|++++.... ........
T Consensus         7 ~i~~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~   86 (715)
T PRK11730          7 TLQVDWLEDGIAELVFDAPGSVNKLDRATLASLGEALDALEAQSDLKGLLLTSAKDAFIVGADITEFLSLFAAPEEELSQ   86 (715)
T ss_pred             eEEEEEcCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCcEEEEEECCCCccccCcCHHHHhhhccCCHHHHHH
Confidence            577774 7999999999999999999999999999999999999999999999999999999999876421 11122245


Q ss_pred             HHHHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcch-HHHHHH
Q 016290           91 VVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HLGEFL  169 (392)
Q Consensus        91 ~~~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G-~~a~~L  169 (392)
                      +++..++++..|.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++| ..+++|
T Consensus        87 ~~~~~~~~~~~i~~~~kPvIAav~G~a~GgG~~LAlacD~ria~~~a~f~~pe~~lGl~p~~g~~~~L~rlvG~~~A~~l  166 (715)
T PRK11730         87 WLHFANSIFNRLEDLPVPTVAAINGYALGGGCECVLATDYRVASPDARIGLPETKLGIMPGFGGTVRLPRLIGADNALEW  166 (715)
T ss_pred             HHHHHHHHHHHHHcCCCCEEEEECCEeehHHHHHHHhCCEEEEcCCCEEeCchhhcCCCCCchHHHHHHHhcCHHHHHHH
Confidence            5666677888999999999999999999999999999999999999999999999999999999999999999 899999


Q ss_pred             hhcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHh---hcccCCChhhHHHHHHHHHHHhCcC
Q 016290          170 ALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEF---SEDVQLDGQSVLNKQSIIDECFSKE  246 (392)
Q Consensus       170 ~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~i~~~f~~~  246 (392)
                      ++||++++|+||+++||||++||++++.+.+.++++.          +...-   .....+...+..  ...+++++.. 
T Consensus       167 lltG~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~----------la~~~~~~~~~~~~~~~p~a--~~~~~~~~~~-  233 (715)
T PRK11730        167 IAAGKDVRAEDALKVGAVDAVVAPEKLQEAALALLKQ----------AIAGKLDWKARRQPKLEPLK--LSKIEAMMSF-  233 (715)
T ss_pred             HHcCCcCCHHHHHHCCCCeEecCHHHHHHHHHHHHHH----------HhhcCCccccccCccccccc--ccchhHHHHH-
Confidence            9999999999999999999999998887665555321          11000   000000000000  0001111100 


Q ss_pred             CHHHHHHHHHHhhccCCcccHHHHH-HHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHcCCccHHHHHHH
Q 016290          247 TVAEIIKSFEAEAGKEGNGWIGPVL-KGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGIR  325 (392)
Q Consensus       247 ~~eei~~~l~~~~~~~~~~~a~~~~-~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eGv~  325 (392)
                                        ..+++.+ ++..+..|.++ .++++++.+...+++++++.|.+.+..++.+   +|++||++
T Consensus       234 ------------------~~~k~~~~~~~~~~~pa~~-~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s---~d~~egi~  291 (715)
T PRK11730        234 ------------------TTAKGMVAQKAGKHYPAPM-TAVKTIEAAAGLGRDEALELEAKGFVKLAKT---NVARALVG  291 (715)
T ss_pred             ------------------HHHHHHHHHhhccCCccHH-HHHHHHHHHhcCCHHHHHHHHHHHHHHHhCC---HHHHHHHH
Confidence                              1112222 34455666666 7888999988889999999999999999999   99999999


Q ss_pred             HHHhcc
Q 016290          326 ALTIEK  331 (392)
Q Consensus       326 a~l~dK  331 (392)
                      +|+.++
T Consensus       292 aF~~~~  297 (715)
T PRK11730        292 IFLNDQ  297 (715)
T ss_pred             HHHHHH
Confidence            999543

>PRK08272 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1e-45  Score=358.48  Aligned_cols=219  Identities=23%  Similarity=0.313  Sum_probs=189.9

Q ss_pred             CCCCCCCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCC-
Q 016290            6 VKNPDEQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNS-   84 (392)
Q Consensus         6 ~~~~~~~~V~~~~~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~-   84 (392)
                      +.+++++.|.++.+++|++||||||+++|+||.+|+.+|.++++.++.|++|++|||+|.|++||+|+|++++...... 
T Consensus         4 ~~~~~~~~v~~e~~~~V~~Itlnrp~~~Nal~~~m~~eL~~al~~~~~d~~vrvvVl~G~G~~FcaG~Dl~~~~~~~~~~   83 (302)
T PRK08272          4 VDLDNLKTMTYEVTGRIARITLNRPEKGNAITADTPLELRAAVERADLDPGVHVILVSGAGKGFCAGYDLSAYAEGSSSG   83 (302)
T ss_pred             cccCCCCeEEEEeECCEEEEEecCccccCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCcCHHHHhhccccc
Confidence            4466778899999999999999999999999999999999999999999999999999999999999999988642110 


Q ss_pred             ---c--------------hhH-----HHHHHHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeecc
Q 016290           85 ---K--------------DSC-----LEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTP  142 (392)
Q Consensus        85 ---~--------------~~~-----~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~P  142 (392)
                         .              ..+     ..++...++++..|.++|||+||+|||+|+|||++|+++||+|||+++++|++|
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~~ias~~a~f~~p  163 (302)
T PRK08272         84 GGGGAYPGKRQAVNHLPDDPWDPMIDYQMMSRFVRGFMSLWHAHKPTVAKVHGYCVAGGTDIALHCDQVIAADDAKIGYP  163 (302)
T ss_pred             ccccccccccccccccccccccchhhHHHHHHHHHHHHHHHhCCCCEEEEEccEeehhhHHHHHhCCEEEEeCCCEecCc
Confidence               0              001     123455567788899999999999999999999999999999999999999999


Q ss_pred             ccccCccCCchhHHHHhhcch-HHHHHHhhcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHh
Q 016290          143 EASIGFHTDCGFSFIHSRLPG-HLGEFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEF  221 (392)
Q Consensus       143 E~~iGl~P~~G~s~~L~rl~G-~~a~~L~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~  221 (392)
                      |+++|.+|..   ..+++++| +++++|+|||++++|+||+++||||++||++++.+.+.++                  
T Consensus       164 e~~~gg~~~~---~~~~~~vG~~~A~~llltG~~i~a~eA~~~GLv~~vv~~~~l~~~a~~l------------------  222 (302)
T PRK08272        164 PTRVWGVPAT---GMWAYRLGPQRAKRLLFTGDCITGAQAAEWGLAVEAVPPEELDERTERL------------------  222 (302)
T ss_pred             chhcccCChH---HHHHHHhhHHHHHHHHHcCCccCHHHHHHcCCCceecCHHHHHHHHHHH------------------
Confidence            9998666643   25678889 9999999999999999999999999999988776544433                  


Q ss_pred             hcccCCChhhHHHHHHHHHHHhCcCCHHHHHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhh
Q 016290          222 SEDVQLDGQSVLNKQSIIDECFSKETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGRE  294 (392)
Q Consensus       222 ~~~~~~~~~~~~~~~~~i~~~f~~~~~eei~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~  294 (392)
                                                                       +++|++.||.+++.+|++++....
T Consensus       223 -------------------------------------------------a~~ia~~~~~a~~~~K~~l~~~~~  246 (302)
T PRK08272        223 -------------------------------------------------VERIAAVPVNQLAMVKLAVNSALL  246 (302)
T ss_pred             -------------------------------------------------HHHHHcCCHHHHHHHHHHHHHHHH
Confidence                                                             789999999999999999998765

>PRK08788 enoyl-CoA hydratase; Validated

Probab=100.00  E-value=8.4e-45  Score=348.00  Aligned_cols=244  Identities=19%  Similarity=0.203  Sum_probs=202.1

Q ss_pred             EEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhh-----CCCceEEEEEcC-CCccccCCCchhhccCCC-Cc-
Q 016290           14 VLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEK-----DDQAKLVIVKGV-GRAFSAGGDLKMFYDGRN-SK-   85 (392)
Q Consensus        14 V~~~~~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~-----d~~v~~Vvl~g~-G~~FcaG~Dl~~l~~~~~-~~-   85 (392)
                      |.++.+++|++|||| |+++|+||.+|+.+|.+++++++.     |++|++|||+|. |++||+|+|++++..... .. 
T Consensus        19 i~~e~~~~ia~itl~-p~~~Nal~~~~~~eL~~al~~~~~~~~~~d~~vrvVVltg~~gk~FcaG~Dl~~~~~~~~~~~~   97 (287)
T PRK08788         19 VYYEEERNVMWMYMR-AQPRPCFNLELLDDIMNLQRAIRQRLDDSGLPVDFWVLASDVPGVFNLGGDLALFAELIRAGDR   97 (287)
T ss_pred             EEEEccCCEEEEEEC-CCCCCCCCHHHHHHHHHHHHHHHhhccCCCCCeEEEEEEcCCCCceEeCcCHHHHhhhccccch
Confidence            556678999999996 999999999999999999999998     899999999999 699999999998753111 11 


Q ss_pred             hhHHHHHHHHHHHHHHHH---hcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcc
Q 016290           86 DSCLEVVYRMYWLCHHIH---TYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLP  162 (392)
Q Consensus        86 ~~~~~~~~~~~~l~~~i~---~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~  162 (392)
                      .....+.+..+..+..+.   .+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++
T Consensus        98 ~~~~~~~~~~~~~~~~l~~~~~~pkPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pev~lGl~p~~g~~~~l~~~v  177 (287)
T PRK08788         98 DALLAYARACVDGVHAFHRGFGAGAISIALVQGDALGGGFEAALSHHTIIAERGAKMGFPEILFNLFPGMGAYSFLARRV  177 (287)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCCEEEEECCeeehHHHHHHHhCCEEEecCCCEeeCchhhhCcCCCchHHHHHHHHh
Confidence            111222222333333333   79999999999999999999999999999999999999999999999999999999999


Q ss_pred             h-HHHHHHhhcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHH
Q 016290          163 G-HLGEFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDE  241 (392)
Q Consensus       163 G-~~a~~L~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~  241 (392)
                      | .++++|++||+.++|+||+++||||++||++++.+.+.++                                      
T Consensus       178 G~~~A~ellltG~~l~A~eA~~~GLV~~vv~~~el~~~a~~~--------------------------------------  219 (287)
T PRK08788        178 GPKLAEELILSGKLYTAEELHDMGLVDVLVEDGQGEAAVRTF--------------------------------------  219 (287)
T ss_pred             hHHHHHHHHHcCCCCCHHHHHHCCCCcEecCchHHHHHHHHH--------------------------------------
Confidence            9 9999999999999999999999999999998876543333                                      


Q ss_pred             HhCcCCHHHHHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHcCCccHHH
Q 016290          242 CFSKETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIY  321 (392)
Q Consensus       242 ~f~~~~~eei~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~  321 (392)
                                                   +++|+++ |.+...+|+..+.....++.+.++.|......++...  ..-.
T Consensus       220 -----------------------------a~~ia~~-~~~~~a~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~  267 (287)
T PRK08788        220 -----------------------------IRKSKRK-LNGWRAMLRARRRVNPLSLEELMDITEIWVDAALQLE--EKDL  267 (287)
T ss_pred             -----------------------------HHHHhcC-ccHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhhcc--cccH
Confidence                                         6788877 7777788887777767789999999887777655552  4566


Q ss_pred             HHHHHHH
Q 016290          322 EGIRALT  328 (392)
Q Consensus       322 eGv~a~l  328 (392)
                      +-|..|.
T Consensus       268 ~~~~~~~  274 (287)
T PRK08788        268 RTMERLV  274 (287)
T ss_pred             HHHHHHH
Confidence            7777776

>KOG1679 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]

Probab=100.00  E-value=3.8e-46  Score=329.12  Aligned_cols=260  Identities=22%  Similarity=0.310  Sum_probs=233.8

Q ss_pred             CCCcEEEEE----eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCC-CccccCCCchhhccCCCC
Q 016290           10 DEQVVLGEE----IGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVG-RAFSAGGDLKMFYDGRNS   84 (392)
Q Consensus        10 ~~~~V~~~~----~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G-~~FcaG~Dl~~l~~~~~~   84 (392)
                      ..++|.+++    +.|+.+|-+|||.+.|+|+.-|+.+|.++|+++..|+.+|+|+|++.- ..||||+|+++-....  
T Consensus        25 ~~~Ev~v~~L~g~~~GItvl~mNRpa~kNsl~r~~~~~l~~~l~~lk~D~~~RvvilrS~vpgvFCaGADLKER~~Ms--  102 (291)
T KOG1679|consen   25 NANEVFVRRLTGKDEGITILNMNRPAKKNSLGRVFVKQLREVLDELKYDNKVRVVILRSLVPGVFCAGADLKERKTMS--  102 (291)
T ss_pred             CCceeeeeeccCCCCCeEEEecCChhhhccHHHHHHHHHHHHHHHHhhCCceeEEEEecCCCceeecCcchHhhhcCC--
Confidence            355787775    558999999999999999999999999999999999999999999877 9999999999976533  


Q ss_pred             chhHHHHHHHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcch-
Q 016290           85 KDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-  163 (392)
Q Consensus        85 ~~~~~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G-  163 (392)
                      ......|......++..|.++|.|+||+++|.++|||++++++||+|||.++++|+++|++++++|+.||+++|+|++| 
T Consensus       103 ~~Ev~~fV~~lR~~~~dIe~Lp~P~IAAidG~ALGGGLElALACDiRva~s~akmGLvET~laiiPGaGGtQRLpR~vg~  182 (291)
T KOG1679|consen  103 PSEVTRFVNGLRGLFNDIERLPQPVIAAIDGAALGGGLELALACDIRVAASSAKMGLVETKLAIIPGAGGTQRLPRIVGV  182 (291)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCccceehhcchhcccchhhhhhccceehhhhccccccccceeeecCCCccchhHHHHhH
Confidence            2334788888889999999999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             HHHHHHhhcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHh
Q 016290          164 HLGEFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECF  243 (392)
Q Consensus       164 ~~a~~L~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f  243 (392)
                      .++.+|++||+.+++.||...|||+|+|...+--+.+.                                          
T Consensus       183 alaKELIftarvl~g~eA~~lGlVnhvv~qneegdaa~------------------------------------------  220 (291)
T KOG1679|consen  183 ALAKELIFTARVLNGAEAAKLGLVNHVVEQNEEGDAAY------------------------------------------  220 (291)
T ss_pred             HHHHhHhhhheeccchhHHhcchHHHHHhcCccccHHH------------------------------------------
Confidence            99999999999999999999999999997654222111                                          


Q ss_pred             CcCCHHHHHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHcCCccHHHHH
Q 016290          244 SKETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEG  323 (392)
Q Consensus       244 ~~~~~eei~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eG  323 (392)
                                           +-|.+++++|..+-|.+++++|..|+.+.+.++..++..|-.-.++...+   .|-.||
T Consensus       221 ---------------------~kal~lA~eilp~gPiavr~aKlAIn~G~evdiasgl~iEe~CYaq~i~t---~drLeg  276 (291)
T KOG1679|consen  221 ---------------------QKALELAREILPQGPIAVRLAKLAINLGMEVDIASGLSIEEMCYAQIIPT---KDRLEG  276 (291)
T ss_pred             ---------------------HHHHHHHHHhccCCchhhhHHHHHhccCceecccccccHHHHHHHhcCcH---HHHHHH
Confidence                                 12346689999999999999999999999999999999999888888888   999999


Q ss_pred             HHHHHhccCCCCCCCC
Q 016290          324 IRALTIEKDNAPKWDP  339 (392)
Q Consensus       324 v~a~l~dK~r~P~w~~  339 (392)
                      +.||- +| |+|.+++
T Consensus       277 laaf~-ek-r~p~y~G  290 (291)
T KOG1679|consen  277 LAAFK-EK-RKPEYKG  290 (291)
T ss_pred             HHHHH-hh-cCCCcCC
Confidence            99998 56 8999875

>PRK06213 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=4.6e-45  Score=340.63  Aligned_cols=224  Identities=18%  Similarity=0.223  Sum_probs=198.8

Q ss_pred             CcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhHHHH
Q 016290           12 QVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEV   91 (392)
Q Consensus        12 ~~V~~~~~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~~~   91 (392)
                      +.|.++.+++|++||||||+ .|+||.+|+.+|.++++.++  +++++|||+|.|++||+|+|++++...   ......+
T Consensus         3 ~~i~~~~~~~v~~itln~~~-~Nal~~~~~~~l~~~l~~~~--~~~~vvvl~g~g~~F~~G~Dl~~~~~~---~~~~~~~   76 (229)
T PRK06213          3 ELVSYTLEDGVATITLDDGK-VNALSPAMIDALNAALDQAE--DDRAVVVITGQPGIFSGGFDLKVMTSG---AQAAIAL   76 (229)
T ss_pred             ceEEEEecCCEEEEEeCCCC-CCCCCHHHHHHHHHHHHHhh--ccCcEEEEeCCCCceEcCcCHHHHhcc---hHhHHHH
Confidence            36889999999999999995 69999999999999999988  457999999999999999999988642   1222456


Q ss_pred             HHHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCC-eeeeccccccCccCCchhHHHHhhcch-HHHHHH
Q 016290           92 VYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEK-TVFSTPEASIGFHTDCGFSFIHSRLPG-HLGEFL  169 (392)
Q Consensus        92 ~~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~-a~f~~PE~~iGl~P~~G~s~~L~rl~G-~~a~~L  169 (392)
                      +...++++..|.++|||+||+|||+|+|||++|+++||||||+++ ++|++||+++|++|+.|+..++++.+| ..+++|
T Consensus        77 ~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~lal~~D~rva~~~~a~f~~pe~~~Gl~~~~~~~~~l~~~~g~~~a~~l  156 (229)
T PRK06213         77 LTAGSTLARRLLSHPKPVIVACTGHAIAKGAFLLLSADYRIGVHGPFKIGLNEVAIGMTMPHAAIELARDRLTPSAFQRA  156 (229)
T ss_pred             HHHHHHHHHHHHcCCCCEEEEEcCeeeHHHHHHHHhCCeeeEecCCcEEECchhhhCCcCChHHHHHHHHHcCHHHHHHH
Confidence            666678888999999999999999999999999999999999999 999999999999988888888998888 888999


Q ss_pred             hhcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHhCcCCHH
Q 016290          170 ALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKETVA  249 (392)
Q Consensus       170 ~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~e  249 (392)
                      ++||++++|+||+++||||++||++++.+.+.                                                
T Consensus       157 ll~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~------------------------------------------------  188 (229)
T PRK06213        157 VINAEMFDPEEAVAAGFLDEVVPPEQLLARAQ------------------------------------------------  188 (229)
T ss_pred             HHcCcccCHHHHHHCCCceeccChHHHHHHHH------------------------------------------------
Confidence            99999999999999999999999887765433                                                


Q ss_pred             HHHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHH
Q 016290          250 EIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLT  308 (392)
Q Consensus       250 ei~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~  308 (392)
                                         +.+++|++.+|.+++.+|++++.....++.+.++.|.+.+
T Consensus       189 -------------------~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~~~~~~~~~  228 (229)
T PRK06213        189 -------------------AAARELAGLNMGAHAATKLKVRAAALEAIRAAIEGDAAEF  228 (229)
T ss_pred             -------------------HHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhchhhhhhhc
Confidence                               3378899999999999999999988888899888887653

>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=100.00  E-value=1.3e-44  Score=385.99  Aligned_cols=282  Identities=20%  Similarity=0.242  Sum_probs=223.3

Q ss_pred             CcEEEEE-eCCEEEEEEcCC-CCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCC-CccccCCCchhhccCCCCchhH
Q 016290           12 QVVLGEE-IGNVRLVTLNRP-RQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVG-RAFSAGGDLKMFYDGRNSKDSC   88 (392)
Q Consensus        12 ~~V~~~~-~~~v~~itLnrp-~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G-~~FcaG~Dl~~l~~~~~~~~~~   88 (392)
                      ..+.++. +++|++|||||| +++|+||.+|+.+|.++++.++.|+++++|||+|.+ ++||+|+|++++..... ....
T Consensus         5 ~~~~~~~~~~~va~itlnrp~~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~~~~~~~F~aG~Dl~~~~~~~~-~~~~   83 (708)
T PRK11154          5 SAFTLNVREDNIAVITIDVPGEKMNTLKAEFAEQVRAILKQLREDKELKGVVFISGKPDNFIAGADINMLAACKT-AQEA   83 (708)
T ss_pred             ceEEEEEcCCCEEEEEECCCCCCCcCCCHHHHHHHHHHHHHHHhCCCceEEEEecCCCCCcccCcChHHhhccCC-HHHH
Confidence            4577777 789999999999 689999999999999999999999999999999976 89999999998854221 1112


Q ss_pred             HHHHHHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCC--eeeeccccccCccCCchhHHHHhhcch-HH
Q 016290           89 LEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEK--TVFSTPEASIGFHTDCGFSFIHSRLPG-HL  165 (392)
Q Consensus        89 ~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~--a~f~~PE~~iGl~P~~G~s~~L~rl~G-~~  165 (392)
                      ..+.....+++..|.++|||+||+|||+|+|||++|+++||||||+++  ++|++||+++|++|++|++++|+|++| ..
T Consensus        84 ~~~~~~~~~~~~~i~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~a~fg~pe~~lGl~p~~gg~~~L~r~vG~~~  163 (708)
T PRK11154         84 EALARQGQQLFAEIEALPIPVVAAIHGACLGGGLELALACHYRVCTDDPKTVLGLPEVQLGLLPGSGGTQRLPRLIGVST  163 (708)
T ss_pred             HHHHHHHHHHHHHHHhCCCCEEEEECCeeechHHHHHHhCCEEEEeCCCCceEeCccccCCCCCCccHHhHHHhhcCHHH
Confidence            344445566888999999999999999999999999999999999996  589999999999999999999999999 99


Q ss_pred             HHHHhhcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHhCc
Q 016290          166 GEFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSK  245 (392)
Q Consensus       166 a~~L~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~  245 (392)
                      +++|++||++++|+||+++||||++||++++.+.+.++++...             ....   ..+..   .   ...+.
T Consensus       164 A~~llltG~~i~a~eA~~~GLv~~vv~~~~l~~~a~~~A~~~~-------------~~~~---~~~~~---~---~~~~~  221 (708)
T PRK11154        164 ALDMILTGKQLRAKQALKLGLVDDVVPHSILLEVAVELAKKGK-------------PARR---PLPVR---E---RLLEG  221 (708)
T ss_pred             HHHHHHhCCcCCHHHHHHCCCCcEecChHHHHHHHHHHHHhcC-------------CccC---cCCch---h---hhccc
Confidence            9999999999999999999999999999988776666643200             0000   00000   0   00000


Q ss_pred             CCH--HHHHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHcCCccHHHHH
Q 016290          246 ETV--AEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEG  323 (392)
Q Consensus       246 ~~~--eei~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eG  323 (392)
                      ...  ..+++            .+...+++-.+..-.|+..+|++++.+...++++++..|.+.+..++.+   +|+++|
T Consensus       222 ~p~~~~~~~~------------~~~~~~~~~~~g~~~A~~~~k~~i~~~~~~~~~~~l~~E~~~~~~~~~s---~~~~~~  286 (708)
T PRK11154        222 NPLGRALLFK------------QARKKTLAKTQGNYPAPERILDVVRTGLEKGMSSGYEAEARAFGELAMT---PESAAL  286 (708)
T ss_pred             CchhHHHHHH------------HHHHHHHHhcccCChHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCC---HHHHHH
Confidence            000  11111            1111222223334479999999999998899999999999999999999   999999


Q ss_pred             HHHHHhcc
Q 016290          324 IRALTIEK  331 (392)
Q Consensus       324 v~a~l~dK  331 (392)
                      +++|+.++
T Consensus       287 ~~aF~~~~  294 (708)
T PRK11154        287 RSIFFATT  294 (708)
T ss_pred             HHHHHHHH
Confidence            99999765

>TIGR03200 dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase

Probab=100.00  E-value=1.3e-44  Score=350.33  Aligned_cols=275  Identities=15%  Similarity=0.211  Sum_probs=209.3

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCC-CccccCCCchhhccCCC-CchhHHHHHHHHHHHH
Q 016290           22 VRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVG-RAFSAGGDLKMFYDGRN-SKDSCLEVVYRMYWLC   99 (392)
Q Consensus        22 v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G-~~FcaG~Dl~~l~~~~~-~~~~~~~~~~~~~~l~   99 (392)
                      +++||||||+++|+||.+|+.+|.++++.++.|++|++|||||.| ++||+|+|++++..... .......++....+++
T Consensus        38 ~A~ItLNRP~k~NAls~~ml~eL~~al~~~~~D~dVrvVVLTG~G~kaFCAG~DLke~~~~~~~~~~~~~~~~~~~~~l~  117 (360)
T TIGR03200        38 NAWIILDNPKQYNSYTTDMVKAIILAFRRASSDRDVVAVVFTAVGDKAFCTGGNTKEYAEYYAGNPQEYRQYMRLFNDMV  117 (360)
T ss_pred             EEEEEECCCCccCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCCcCHHHHhhhcccChhHHHHHHHHHHHHH
Confidence            556999999999999999999999999999999999999999999 79999999998765211 1222344555556788


Q ss_pred             HHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcch-HHHHHHhhcCCcccH
Q 016290          100 HHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HLGEFLALTGARLNG  178 (392)
Q Consensus       100 ~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G-~~a~~L~ltG~~l~a  178 (392)
                      ..|..++|||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++| ..++++++||++++|
T Consensus       118 ~~i~~~pKPVIAAVnG~AiGGGleLALaCDlrIAse~A~Fg~PE~rlGl~P~~Ggt~rLprlvG~~rA~~llltGe~~sA  197 (360)
T TIGR03200       118 SAILGCDKPVICRVNGMRIGGGQEIGMAADFTIAQDLANFGQAGPKHGSAPIGGATDFLPLMIGCEQAMVSGTLCEPWSA  197 (360)
T ss_pred             HHHHhCCCCEEEEECCEeeeHHHHHHHhCCEEEEcCCCEEeCchhccCCCCCccHHHHHHHhhCHHHHHHHHHhCCcCcH
Confidence            8999999999999999999999999999999999999999999999999999999999999999 999999999999999


Q ss_pred             HHHHHcCccceecCCCChH------------HHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHh-Cc
Q 016290          179 KELVAAGLATHFVPSEKLP------------ELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECF-SK  245 (392)
Q Consensus       179 ~eA~~~GLv~~vv~~~~l~------------~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f-~~  245 (392)
                      +||+++|||+++||+.+++            +..+.+.++...++               .....+......++.+= ..
T Consensus       198 ~EA~~~GLVd~VVp~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~---------------~~~~~~~~~k~~~~~~~~~~  262 (360)
T TIGR03200       198 HKAKRLGIIMDVVPALKVDGKFVANPLVVTDRYLDEFGRIVHGEF---------------KAGDELKAGKELIKQGTIDL  262 (360)
T ss_pred             HHHHHcCChheecCchhcCcchhcCcccchHHHHHHHhHHhcCCC---------------cchhHHHHHHHHHhcccchH
Confidence            9999999999999988873            22222222111000               00011222222222110 00


Q ss_pred             CCHHHHHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHcCCccHHHHHHH
Q 016290          246 ETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGIR  325 (392)
Q Consensus       246 ~~~eei~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eGv~  325 (392)
                      .-+++-+               .+++.++....|.++..++..||......+...-..-...+..-+.    .+..+|++
T Consensus       263 ~~l~~~~---------------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~  323 (360)
T TIGR03200       263 SLLDEAV---------------EALCAKLLNTFPECLTKSIEELRKPKLFAWNQNKENSRAWLALNMM----NEARTGFR  323 (360)
T ss_pred             hHHHHHH---------------HHHHHHHHHhchHHHHHHHHHhhhHHHHHHHhhhhhhHHHHHhhcc----cccchhhH
Confidence            1122222               2345678889999999999999988776666554444444433332    48899999


Q ss_pred             HHHhcc
Q 016290          326 ALTIEK  331 (392)
Q Consensus       326 a~l~dK  331 (392)
                      ||- +|
T Consensus       324 ~~~-~~  328 (360)
T TIGR03200       324 AFN-EG  328 (360)
T ss_pred             HHh-cc
Confidence            998 53

Members of this protein family are 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase, a ring-hydrolyzing enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.

>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ

Probab=100.00  E-value=8.4e-44  Score=378.99  Aligned_cols=278  Identities=18%  Similarity=0.241  Sum_probs=221.4

Q ss_pred             EEeCCEEEEEEcCC-CCCCCCCHHHHHHHHHHHHHHhhCCCceEEEE-EcCCCccccCCCchhhccCCCCchhHHHHHHH
Q 016290           17 EEIGNVRLVTLNRP-RQLNVISSKVVSLLAEYLEKWEKDDQAKLVIV-KGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYR   94 (392)
Q Consensus        17 ~~~~~v~~itLnrp-~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl-~g~G~~FcaG~Dl~~l~~~~~~~~~~~~~~~~   94 (392)
                      +.+++|++|||||| ++.|+||.+|+.+|.++|+.++.|++|++||| +|.|++||+|+|++++..... ......++..
T Consensus         6 ~~~~~Va~itlnrp~~~~Nal~~~~~~eL~~~l~~~~~d~~vr~VVl~~g~g~~FcaG~Dl~~~~~~~~-~~~~~~~~~~   84 (699)
T TIGR02440         6 VREDGIAILTIDVPGEKMNTLKAEFADQVSEILSQLKRDKSIRGLVLVSGKPDNFIAGADISMLAACQT-AGEAKALAQQ   84 (699)
T ss_pred             EcCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCceeeccCchhhhccCC-hhHHHHHHHH
Confidence            45789999999999 68999999999999999999999999999987 578899999999999854211 1222344555


Q ss_pred             HHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCC--eeeeccccccCccCCchhHHHHhhcch-HHHHHHhh
Q 016290           95 MYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEK--TVFSTPEASIGFHTDCGFSFIHSRLPG-HLGEFLAL  171 (392)
Q Consensus        95 ~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~--a~f~~PE~~iGl~P~~G~s~~L~rl~G-~~a~~L~l  171 (392)
                      ...++..|.++|||+||+|||+|+|||++|+++||||||+++  ++|++||+++|++|++|++++|+|++| ..+++|++
T Consensus        85 ~~~~~~~l~~~~kPvIAaVnG~a~GgG~~LaLacD~ria~~~~~a~fg~pev~lGl~p~~g~~~~L~r~vG~~~A~~lll  164 (699)
T TIGR02440        85 GQVLFAELEALPIPVVAAIHGACLGGGLELALACHSRVCSDDDKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTALDMIL  164 (699)
T ss_pred             HHHHHHHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEcCCCCcEEechhhcccCCCCccHHHHHHHhcCHHHHHHHHH
Confidence            567888999999999999999999999999999999999986  799999999999999999999999999 99999999


Q ss_pred             cCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHhCc--CCHH
Q 016290          172 TGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSK--ETVA  249 (392)
Q Consensus       172 tG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~--~~~e  249 (392)
                      ||++++|++|+++||||++||++++.+.+.++++....                ...+.+..   .   +.-+.  ....
T Consensus       165 tG~~~~a~eA~~~GLV~~vv~~~~l~~~a~~~A~~~~~----------------~~~~~~~~---~---~~~~~~~~a~~  222 (699)
T TIGR02440       165 TGKQLRAKQALKLGLVDDVVPQSILLDTAVEMALKGKP----------------IRKPLSLQ---E---RLLEGTPLGRA  222 (699)
T ss_pred             cCCcCCHHHHHhCCCCcEecChhHHHHHHHHHHHhCCC----------------CCCCccch---h---hhcccCchhHH
Confidence            99999999999999999999999888777766531000                00000000   0   00000  0001


Q ss_pred             HHHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHh
Q 016290          250 EIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGIRALTI  329 (392)
Q Consensus       250 ei~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eGv~a~l~  329 (392)
                      .+.+.            +.+.+++-.+..-.+...+|+.++.+...+++++++.|.+.+..++.+   +|+++++++|+.
T Consensus       223 ~~~~~------------~~k~~~~~~~~~~~a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s---~~~~~~~~~f~~  287 (699)
T TIGR02440       223 LLFDQ------------AAKKTAKKTQGNYPAAERILDVVRQGLAQGMQKGLDAEARAFGELVMT---PESAALRSIFFA  287 (699)
T ss_pred             HHHHH------------HHHHHHHhcccCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC---HHHHHHHHHHHH
Confidence            11111            112223334446678899999999999999999999999999999999   999999999998


Q ss_pred             ccC
Q 016290          330 EKD  332 (392)
Q Consensus       330 dK~  332 (392)
                      ++.
T Consensus       288 ~~~  290 (699)
T TIGR02440       288 TTE  290 (699)
T ss_pred             HHH
Confidence            653

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.

>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB

Probab=100.00  E-value=7.4e-43  Score=371.92  Aligned_cols=285  Identities=15%  Similarity=0.194  Sum_probs=223.2

Q ss_pred             cEEEEE-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCC-CCchhHHH
Q 016290           13 VVLGEE-IGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGR-NSKDSCLE   90 (392)
Q Consensus        13 ~V~~~~-~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~-~~~~~~~~   90 (392)
                      .|.++. +++|++||||||+++|+||.+|+.+|.++++.++.|+++++|||+|.|++||+|+|++++.... ........
T Consensus         7 ~i~~~~~~~gva~Itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~   86 (714)
T TIGR02437         7 TIQVTALEDGIAELKFDAPGSVNKFDRATLASLDQALDAIKAQSSLKGVILTSGKDAFIVGADITEFLGLFALPDAELIQ   86 (714)
T ss_pred             eEEEEEccCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCccccCcCHHHHhhcccCCHHHHHH
Confidence            577774 7899999999999999999999999999999999999999999999999999999999986421 11122234


Q ss_pred             HHHHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcch-HHHHHH
Q 016290           91 VVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HLGEFL  169 (392)
Q Consensus        91 ~~~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G-~~a~~L  169 (392)
                      +++...+++..|.++|||+||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|+|++| ..+++|
T Consensus        87 ~~~~~~~~~~~i~~~pkPvIAai~G~alGGGleLalacD~ria~~~a~fglPEv~lGl~Pg~Ggt~rL~rliG~~~A~~l  166 (714)
T TIGR02437        87 WLLFANSIFNKLEDLPVPTVAAINGIALGGGCECVLATDFRIADDTAKIGLPETKLGIMPGFGGTVRLPRVIGADNALEW  166 (714)
T ss_pred             HHHHHHHHHHHHHhCCCCEEEEECCeeecHHHHHHHhCCEEEEeCCCEEecchhhcCCCCCccHHHHHHHHhCHHHHHHH
Confidence            5555567888999999999999999999999999999999999999999999999999999999999999999 899999


Q ss_pred             hhcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHH---hhcccCCChhhHHHHHHHHHHHhCcC
Q 016290          170 ALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEE---FSEDVQLDGQSVLNKQSIIDECFSKE  246 (392)
Q Consensus       170 ~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~~i~~~f~~~  246 (392)
                      ++||++++|++|+++||||++||++++.+.+.+++..          .+..   ......+....+  ....+..+|+. 
T Consensus       167 lltG~~~~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~----------~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-  233 (714)
T TIGR02437       167 IASGKENRAEDALKVGAVDAVVTADKLGAAALQLLKD----------AINGKLDWKAKRQPKLEPL--KLSKIEAMMSF-  233 (714)
T ss_pred             HHcCCcCCHHHHHHCCCCcEeeChhHHHHHHHHHHHH----------HhhcCCcccccCCCCcccc--cccchHHHHHH-
Confidence            9999999999999999999999998887766665321          1110   000000000000  00111122111 


Q ss_pred             CHHHHHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHcCCccHHHHHHHH
Q 016290          247 TVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGIRA  326 (392)
Q Consensus       247 ~~eei~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eGv~a  326 (392)
                                        +++.+.........-.+-..+.+.++.+...++++++..|.+.+..++.+   ++.+..++.
T Consensus       234 ------------------~~~~~~~~~~~~~~~pap~~~~~~v~~~~~~~~~~gl~~E~~~f~~l~~s---~~a~~l~~~  292 (714)
T TIGR02437       234 ------------------TTAKGMVAQVAGPHYPAPMTAVKTIEKAARFGRDKALEIEAKGFVKLAKT---SEAKALIGL  292 (714)
T ss_pred             ------------------HHHHHHHHHhhcCCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCC---HHHHHHHHH
Confidence                              11222122223333445556667888888889999999999999999999   999999999


Q ss_pred             HHhcc
Q 016290          327 LTIEK  331 (392)
Q Consensus       327 ~l~dK  331 (392)
                      |+.++
T Consensus       293 ff~~r  297 (714)
T TIGR02437       293 FLNDQ  297 (714)
T ss_pred             HhhhH
Confidence            99765

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.

>KOG1681 consensus Enoyl-CoA isomerase [Lipid transport and metabolism]

Probab=100.00  E-value=2.3e-43  Score=314.19  Aligned_cols=261  Identities=23%  Similarity=0.332  Sum_probs=224.5

Q ss_pred             CCCCCcEEEEE---eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccC---
Q 016290            8 NPDEQVVLGEE---IGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDG---   81 (392)
Q Consensus         8 ~~~~~~V~~~~---~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~---   81 (392)
                      +.++....+.+   +..|..+.||||.|+|+||..|+.++.++++.+..||++|+|||.|+||.||||.|+..+...   
T Consensus        15 ~~s~ksl~v~vk~~~~~V~hv~lnRPsk~Nal~~~~w~E~~~cf~~l~~dpdcr~iilsg~GKhFcaGIDl~~~~~~~~~   94 (292)
T KOG1681|consen   15 DHSYKSLEVSVKSAQPFVYHVQLNRPSKLNALNKVFWREFKECFDSLDRDPDCRAIILSGAGKHFCAGIDLNDMASDRIL   94 (292)
T ss_pred             ccccceeeeeecCCCCeEEEEEecCcchhhhhhHHHHHHHHHHHHhhccCCCceEEEEecCCcceecccCcchhhhhhcc
Confidence            34455444543   457999999999999999999999999999999999999999999999999999997665431   


Q ss_pred             -CCCch------hHHHHHHHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchh
Q 016290           82 -RNSKD------SCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGF  154 (392)
Q Consensus        82 -~~~~~------~~~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~  154 (392)
                       ..+++      ..+++....+..+..|.+||||||++|+|.|+|||+.|.-+||+|+|++++.|+.-|+.+|+..|+|.
T Consensus        95 ~~~~dd~aR~g~~lrr~Ik~~Q~~~t~ie~CpKPVIaavHg~CiGagvDLiTAcDIRycsqDAffsvkEVDvglaADvGT  174 (292)
T KOG1681|consen   95 QPEGDDVARKGRSLRRIIKRYQDTFTAIERCPKPVIAAVHGACIGAGVDLITACDIRYCSQDAFFSVKEVDVGLAADVGT  174 (292)
T ss_pred             ccccchHhhhhHHHHHHHHHHHHHHHHHHhCChhHHHHHHhhhccccccceeecceeeecccceeeeeeeeeehhhchhh
Confidence             11111      12567777788899999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhcch--HHHHHHhhcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhH
Q 016290          155 SFIHSRLPG--HLGEFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSV  232 (392)
Q Consensus       155 s~~L~rl~G--~~a~~L~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  232 (392)
                      ..+||..+|  .++++|.+|++.++|.||+..||+.++.|+.+-. +..                               
T Consensus       175 L~RlpkvVGn~s~~~elafTar~f~a~EAl~~GLvSrvf~dk~~l-l~~-------------------------------  222 (292)
T KOG1681|consen  175 LNRLPKVVGNQSLARELAFTARKFSADEALDSGLVSRVFPDKEEL-LNG-------------------------------  222 (292)
T ss_pred             HhhhhHHhcchHHHHHHHhhhhhcchhhhhhcCcchhhcCCHHHH-Hhh-------------------------------
Confidence            999999999  6999999999999999999999999999875421 011                               


Q ss_pred             HHHHHHHHHHhCcCCHHHHHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHH
Q 016290          233 LNKQSIIDECFSKETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINIL  312 (392)
Q Consensus       233 ~~~~~~i~~~f~~~~~eei~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~  312 (392)
                                                        +..+++.|+.+||.+++.||+.+...++.+.++.|..=..+-..++
T Consensus       223 ----------------------------------~l~mA~~Ia~KSpvaVqgTK~~L~ysrehsv~~sLnyvatwNms~L  268 (292)
T KOG1681|consen  223 ----------------------------------ALPMAELIASKSPVAVQGTKENLLYSREHSVEESLNYVATWNMSML  268 (292)
T ss_pred             ----------------------------------hHHHHHHhccCCceeeechHHHHHHHhhhhhhhhHHHHHHHHHHHH
Confidence                                              2345899999999999999999999999999999998888888888


Q ss_pred             HcCCccHHHHHHHHHHhccCCCCCCC
Q 016290          313 RAIISADIYEGIRALTIEKDNAPKWD  338 (392)
Q Consensus       313 ~~~~~~d~~eGv~a~l~dK~r~P~w~  338 (392)
                      .+   .|+.+.+.|.+ .|++.+.|.
T Consensus       269 ~s---~Dl~~av~a~m-~k~k~~tfs  290 (292)
T KOG1681|consen  269 LS---DDLVKAVMAQM-EKLKTVTFS  290 (292)
T ss_pred             HH---HHHHHHHHHHh-hcCCCCCcc
Confidence            88   99999999999 453333353

>PLN02267 enoyl-CoA hydratase/isomerase family protein

Probab=100.00  E-value=6.6e-42  Score=321.05  Aligned_cols=183  Identities=19%  Similarity=0.252  Sum_probs=156.6

Q ss_pred             EEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCce-EEEEEcCCCccccCCCchhhccCCCCchhHHHHH
Q 016290           14 VLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAK-LVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVV   92 (392)
Q Consensus        14 V~~~~~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~-~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~~~~   92 (392)
                      |.++.+++|++|+||||++ |+||.+|+.+|.++++.++.|++++ +||++|.|++||+|+|++++............+.
T Consensus         2 ~~~~~~~~v~~i~Lnrp~~-Nal~~~~~~eL~~al~~~~~d~~~~~vVV~~g~g~~FsaG~Dl~~~~~~~~~~~~~~~~~   80 (239)
T PLN02267          2 CTLEKRGNLFILTLTGDGE-HRLNPTLIDSIRSALRQVKSQATPGSVLITTAEGKFFSNGFDLAWAQAAGSAPSRLHLMV   80 (239)
T ss_pred             ceeEecCCEEEEEeCCCCc-CcCCHHHHHHHHHHHHHHHhCCCCceEEEEcCCCCceeCCcCHHHHhccccCHHHHHHHH
Confidence            6788899999999999986 9999999999999999999999875 7777899999999999998753211111123344


Q ss_pred             HHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEe-CCeeeeccccccCcc-CCchhHHHHhhcch-HHH-HH
Q 016290           93 YRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVT-EKTVFSTPEASIGFH-TDCGFSFIHSRLPG-HLG-EF  168 (392)
Q Consensus        93 ~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riat-e~a~f~~PE~~iGl~-P~~G~s~~L~rl~G-~~a-~~  168 (392)
                      +...+++..|.++|||+||+|||+|+|||++|+++||+|||+ ++++|++||+++|++ |++ ++.+|++++| ..+ ++
T Consensus        81 ~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~~Gl~~p~~-~~~~l~~~vG~~~a~~~  159 (239)
T PLN02267         81 AKLRPLVADLISLPMPTIAAVTGHASAAGFILALSHDYVLMRKDRGVLYMSEVDIGLPLPDY-FMALLRAKIGSPAARRD  159 (239)
T ss_pred             HHHHHHHHHHhcCCCCEEEEECCcchHHHHHHHHHCCEEEecCCCCeEeccccccCCCCChH-HHHHHHHHcChHHHHHH
Confidence            455678888999999999999999999999999999999998 568999999999997 654 5778999988 888 69


Q ss_pred             HhhcCCcccHHHHHHcCccceecCC-CChHH
Q 016290          169 LALTGARLNGKELVAAGLATHFVPS-EKLPE  198 (392)
Q Consensus       169 L~ltG~~l~a~eA~~~GLv~~vv~~-~~l~~  198 (392)
                      |++||++++|+||+++||+|++||+ +++.+
T Consensus       160 llltG~~~~a~eA~~~Glv~~vv~~~~~l~~  190 (239)
T PLN02267        160 VLLRAAKLTAEEAVEMGIVDSAHDSAEETVE  190 (239)
T ss_pred             HHHcCCcCCHHHHHHCCCcceecCCHHHHHH
Confidence            9999999999999999999999985 45554

>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial

Probab=100.00  E-value=7.6e-41  Score=357.27  Aligned_cols=292  Identities=17%  Similarity=0.238  Sum_probs=219.1

Q ss_pred             CCCCCcEEEEEeCCEEEEEEcCCC-CCCCCCHHHHHHHHHHHHHHhhCCCceEE-EEEcCCCccccCCCchhhccCCCCc
Q 016290            8 NPDEQVVLGEEIGNVRLVTLNRPR-QLNVISSKVVSLLAEYLEKWEKDDQAKLV-IVKGVGRAFSAGGDLKMFYDGRNSK   85 (392)
Q Consensus         8 ~~~~~~V~~~~~~~v~~itLnrp~-~lNal~~~m~~~L~~~l~~~~~d~~v~~V-vl~g~G~~FcaG~Dl~~l~~~~~~~   85 (392)
                      .+.+..+.++.+++|++||||||+ +.|+||.+|+.+|.++++.++.|++|++| |++|.|++||+|+|++++..... .
T Consensus         9 ~~~~~~~~~~~~~gVa~itlnrP~~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVvltg~g~~F~aG~Dl~~~~~~~~-~   87 (737)
T TIGR02441         9 LMARTHRHYEVKGDVAVVKIDSPNSKVNTLSKELFAEFKEVMNELWTNEAIKSAVLISGKPGSFVAGADIQMIAACKT-A   87 (737)
T ss_pred             CCCCCeEEEEEECCEEEEEEcCCCCCCCCCCHHHHHHHHHHHHHHhhCCCCEEEEEEECCCCcceeCcCHHHHhccCC-h
Confidence            445567899999999999999998 68999999999999999999999999965 56999999999999999864211 1


Q ss_pred             hhHHHHHHHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCC--eeeeccccccCccCCchhHHHHhhcch
Q 016290           86 DSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEK--TVFSTPEASIGFHTDCGFSFIHSRLPG  163 (392)
Q Consensus        86 ~~~~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~--a~f~~PE~~iGl~P~~G~s~~L~rl~G  163 (392)
                      .....++....+++..|.+++|||||+|||+|+|||++|+++||||||+++  ++|++||+++|++|++|++++|+|++|
T Consensus        88 ~~~~~~~~~~~~l~~~i~~~~kPvIAav~G~a~GgG~eLALacD~ria~~~a~a~fglpEv~lGl~Pg~Ggt~rLprliG  167 (737)
T TIGR02441        88 QEVTQLSQEGQEMFERIEKSQKPIVAAISGSCLGGGLELALACHYRIATKDRKTLLGLPEVMLGLLPGAGGTQRLPKLTG  167 (737)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEcCCCCCeEecchhhhCCCCCccHhhhHHHhhC
Confidence            223455566677889999999999999999999999999999999999987  589999999999999999999999999


Q ss_pred             -HHHHHHhhcCCcccHHHHHHcCccceecCC--CC-----------hHHHHHHHHhccCCCHHHHHHHHHHhhccc-CCC
Q 016290          164 -HLGEFLALTGARLNGKELVAAGLATHFVPS--EK-----------LPELEKRLIGLNTGDEIAVKSAIEEFSEDV-QLD  228 (392)
Q Consensus       164 -~~a~~L~ltG~~l~a~eA~~~GLv~~vv~~--~~-----------l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~-~~~  228 (392)
                       ..+++|++||++++|++|+++||||++||+  ++           +.+.+.+++              .+..... ...
T Consensus       168 ~~~A~~l~ltG~~i~a~eA~~~GLVd~vv~~~~~~~~~l~~~~~~~l~~~A~~~a--------------~~l~~~~~~~~  233 (737)
T TIGR02441       168 VPAALDMMLTGKKIRADRAKKMGIVDQLVDPLGPGLKPAEENTIEYLEEVAVKFA--------------QGLANGKLSIN  233 (737)
T ss_pred             HHHHHHHHHcCCcCCHHHHHHCCCCeEecCCcccccccchhhhHHHHHHHHHHHH--------------HHhhcccCCcc
Confidence             899999999999999999999999999996  22           222222221              1100000 000


Q ss_pred             h-hhHHHHHHHHHHHhCc-CCHHHHHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHH
Q 016290          229 G-QSVLNKQSIIDECFSK-ETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFR  306 (392)
Q Consensus       229 ~-~~~~~~~~~i~~~f~~-~~~eei~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~  306 (392)
                      . ........  ....+. .....+++...            +.+.+-.+....+...+.+.+..+...++++++..|.+
T Consensus       234 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~------------~~~~~~~~g~~~Ap~~~l~~v~~~~~~~~~~gl~~E~~  299 (737)
T TIGR02441       234 RDKGLVHKIT--QYVMTNPFVRQQVYKTAE------------DKVMKQTKGLYPAPLKILDVVRTGYDQGPDAGYEAESK  299 (737)
T ss_pred             ccccccCccc--hhhcccchhHHHHHHHHH------------HHHHHhccCCCccHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence            0 00000000  000000 00111122111            11222233335566677788888888899999999999


Q ss_pred             HHHHHHHcCCccHHHHHHHHHHhcc
Q 016290          307 LTINILRAIISADIYEGIRALTIEK  331 (392)
Q Consensus       307 ~~~~~~~~~~~~d~~eGv~a~l~dK  331 (392)
                      .+..++.+   ++.+.-++.|+.++
T Consensus       300 ~f~~l~~s---~~a~al~~~f~~~~  321 (737)
T TIGR02441       300 AFGELSMT---FESKALIGLFHGQT  321 (737)
T ss_pred             HHHHHhCC---HHHHHHHHHHHHHH
Confidence            99999999   99999999999865

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).

>COG0447 MenB Dihydroxynaphthoic acid synthase [Coenzyme metabolism]

Probab=100.00  E-value=2.2e-41  Score=299.47  Aligned_cols=253  Identities=22%  Similarity=0.339  Sum_probs=208.1

Q ss_pred             CCCCcEEEEEe-CCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcC--C-CccccCCCchhhccC-C-
Q 016290            9 PDEQVVLGEEI-GNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGV--G-RAFSAGGDLKMFYDG-R-   82 (392)
Q Consensus         9 ~~~~~V~~~~~-~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~--G-~~FcaG~Dl~~l~~~-~-   82 (392)
                      ..+.+|++++. ++++.||+|||+++||+.+..+.+|.++|..+..|++|.+|+|||.  | ++||+|||-+--... . 
T Consensus        15 ~~y~dI~Y~~~~~giakItinRPevrNAfrP~TV~Em~~Af~~Ar~d~~vGvi~lTG~~~G~~AFCsGGDQ~vRg~~~gY   94 (282)
T COG0447          15 EGYEDITYEKSVDGIAKITINRPEVRNAFRPKTVDEMIDAFADARDDPNVGVILLTGNGDGDKAFCSGGDQKVRGDSGGY   94 (282)
T ss_pred             CCcceeEEeeccCceEEEEecChhhhccCCCccHHHHHHHHHhhhcCCCccEEEEecCCCCCeeeecCCCceecccCCCc
Confidence            45788999998 9999999999999999999999999999999999999999999985  6 999999997654331 1 


Q ss_pred             CCchhHHHHHHHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcc
Q 016290           83 NSKDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLP  162 (392)
Q Consensus        83 ~~~~~~~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~  162 (392)
                      .+++...+ + ....+-+.|.++||||||.|+|.++|||-.|-+.||+-||+++++|+..-.++|-|-++-|+-+|+|.+
T Consensus        95 ~~d~~~~r-L-nvLdlQrlIR~~PKpViA~V~G~AiGGGhvlhvvCDLTiAa~nA~FgQTgp~VGSFD~G~Gs~ylar~V  172 (282)
T COG0447          95 VDDDGIPR-L-NVLDLQRLIRTMPKPVIAMVAGYAIGGGHVLHVVCDLTIAADNAIFGQTGPKVGSFDGGYGSSYLARIV  172 (282)
T ss_pred             cCCccCcc-c-chhhHHHHHHhCCcceEEEEeeEeccCccEEEEEeeeeeehhcchhcCCCCCcccccCcccHHHHHHHh
Confidence            11111111 1 123566789999999999999999999999999999999999999999999999997777777899999


Q ss_pred             h-HHHHHHhhcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHH
Q 016290          163 G-HLGEFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDE  241 (392)
Q Consensus       163 G-~~a~~L~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~  241 (392)
                      | .+|+++.+.++.++|+||+++|+||.|||.++|++...+                                       
T Consensus       173 GqKkArEIwfLcR~Y~A~eal~MGlVN~Vvp~~~LE~e~v~---------------------------------------  213 (282)
T COG0447         173 GQKKAREIWFLCRQYDAEEALDMGLVNTVVPHADLEKETVQ---------------------------------------  213 (282)
T ss_pred             hhhhhHHhhhhhhhccHHHHHhcCceeeeccHHHHHHHHHH---------------------------------------
Confidence            9 899999999999999999999999999999998763333                                       


Q ss_pred             HhCcCCHHHHHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHH--HHHHHHHHHHHHHHHcCCccH
Q 016290          242 CFSKETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLA--ECLKKEFRLTINILRAIISAD  319 (392)
Q Consensus       242 ~f~~~~~eei~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~--~~l~~E~~~~~~~~~~~~~~d  319 (392)
                                              |    ++.|.++||++++..|.+++.... .+.  +.|.-+.  ..-...+   ++
T Consensus       214 ------------------------W----~~E~l~kSP~AlR~LK~Afnad~D-GlaG~q~~ag~a--t~L~YmT---dE  259 (282)
T COG0447         214 ------------------------W----AREMLAKSPTALRMLKAAFNADCD-GLAGLQELAGNA--TLLYYMT---DE  259 (282)
T ss_pred             ------------------------H----HHHHHhcChHHHHHHHHHhcCCCc-hhhHHHHhcccc--eEEEEec---hh
Confidence                                    4    578899999999999999985433 111  1121111  1112345   89


Q ss_pred             HHHHHHHHHhccCCCCCCC
Q 016290          320 IYEGIRALTIEKDNAPKWD  338 (392)
Q Consensus       320 ~~eGv~a~l~dK~r~P~w~  338 (392)
                      .+||-.||+ +| |+|.|+
T Consensus       260 a~EGr~AF~-eK-R~Pdf~  276 (282)
T COG0447         260 AQEGRDAFL-EK-RKPDFS  276 (282)
T ss_pred             hhhhHHHHh-hc-cCCChH
Confidence            999999999 77 999986

>KOG0016 consensus Enoyl-CoA hydratase/isomerase [Lipid transport and metabolism]

Probab=100.00  E-value=5.9e-40  Score=298.98  Aligned_cols=253  Identities=21%  Similarity=0.298  Sum_probs=225.8

Q ss_pred             CCCCcEEEEEeCCEEEEEEc-CCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchh
Q 016290            9 PDEQVVLGEEIGNVRLVTLN-RPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDS   87 (392)
Q Consensus         9 ~~~~~V~~~~~~~v~~itLn-rp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~   87 (392)
                      +.+..+.+++++++.+|.+| ||++.|+|+.+|..+|..+|....+|+++..++++|.|+.||+|.|++.+.....++..
T Consensus         4 ~~~~~~vv~~~~g~~~I~~~~~Pkk~Nal~~e~y~~i~~al~~a~~dds~~~tv~s~~G~~f~sG~Df~~~~~~~~~d~~   83 (266)
T KOG0016|consen    4 MRYREIVVTRENGPFFIALNIRPKKKNALNREDYVYIQRALEEANDDDSVSITVLSSNGSYFCSGLDFSPFAKALDDDAN   83 (266)
T ss_pred             ccccceEEEecCCcEEEEecCCCcccccccHHHHHHHHHHHHHhhcccceEEEEEecCccEEeeccccchhhhcCCCccc
Confidence            45678999999999999999 99999999999999999999999999999999999999999999999988763322211


Q ss_pred             -----HHHHHHHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcc
Q 016290           88 -----CLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLP  162 (392)
Q Consensus        88 -----~~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~  162 (392)
                           ...+.....-+...+..+|||+||.|||+++|-|+.+...||+++|+|+++|..|++.+|+.|++|++|.||+++
T Consensus        84 ~~~~~~~~~v~~~~~~v~~fi~f~Kplia~vNGPAIGlgasil~lcD~V~A~Dka~F~TPfa~lGq~PEG~Ss~t~p~im  163 (266)
T KOG0016|consen   84 EESDKASKFVKNVSCFVNTFINFPKPLVALVNGPAIGLGASILPLCDYVWASDKAWFQTPFAKLGQSPEGCSSVTLPKIM  163 (266)
T ss_pred             ccchhhHHHHHHHHHHHHHHhcCCCCEEEEecCCccchhhHHhhhhheEEeccceEEeccchhcCCCCCcceeeeehHhh
Confidence                 122222233467788999999999999999999999999999999999999999999999999999999999999


Q ss_pred             h-HHHHHHhhcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHH
Q 016290          163 G-HLGEFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDE  241 (392)
Q Consensus       163 G-~~a~~L~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~  241 (392)
                      | ..|.+++|.|++++|+||.+.|||+++++.+.+.+.+  +                                      
T Consensus       164 G~~~A~E~ll~~~kltA~Ea~~~glVskif~~~tf~~~v--~--------------------------------------  203 (266)
T KOG0016|consen  164 GSASANEMLLFGEKLTAQEACEKGLVSKIFPAETFNEEV--L--------------------------------------  203 (266)
T ss_pred             chhhHHHHHHhCCcccHHHHHhcCchhhhcChHHHHHHH--H--------------------------------------
Confidence            9 9999999999999999999999999999997776422  1                                      


Q ss_pred             HhCcCCHHHHHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHcCCccHHH
Q 016290          242 CFSKETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIY  321 (392)
Q Consensus       242 ~f~~~~~eei~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~  321 (392)
                                                 ..++++++.+|.+++..|+++|......+..+.+.|.......|.+   +|+.
T Consensus       204 ---------------------------~~ikq~s~l~p~sl~~~K~L~rs~~k~~l~~an~~E~~~l~~~W~s---~e~~  253 (266)
T KOG0016|consen  204 ---------------------------KKIKQYSKLSPESLLGMKKLLRSNIKEELIKANEEECNVLLKQWVS---AECL  253 (266)
T ss_pred             ---------------------------HHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhccC---hHHH
Confidence                                       2378899999999999999999998999999999999999999999   9999


Q ss_pred             HHHHHHHhcc
Q 016290          322 EGIRALTIEK  331 (392)
Q Consensus       322 eGv~a~l~dK  331 (392)
                      +.+++|+.++
T Consensus       254 ~~~~~~~~~~  263 (266)
T KOG0016|consen  254 ARFKQYLSKK  263 (266)
T ss_pred             HHHHHHhccc
Confidence            9999999543

>cd06558 crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily

Probab=100.00  E-value=5.8e-40  Score=298.21  Aligned_cols=190  Identities=30%  Similarity=0.451  Sum_probs=175.3

Q ss_pred             EEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhHHHHHH
Q 016290           14 VLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVY   93 (392)
Q Consensus        14 V~~~~~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~~~~~   93 (392)
                      |.+++++++++|+||+|++.|++|.+|+++|.++++.++.|+++++|||+|.|+.||+|+|++++............+++
T Consensus         1 i~~~~~~~i~~i~l~~~~~~N~~~~~~~~~l~~~l~~~~~d~~~~~vvl~~~~~~Fs~G~dl~~~~~~~~~~~~~~~~~~   80 (195)
T cd06558           1 VLVERDGGVATITLNRPEKRNALSLEMLDELAAALDEAEADPDVRVVVLTGAGKAFCAGADLKELAALSDAGEEARAFIR   80 (195)
T ss_pred             CEEEEECCEEEEEECCccccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceEeCcCHHHHhcccccchhHHHHHH
Confidence            46788899999999999999999999999999999999999999999999999999999999998764332212367788


Q ss_pred             HHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcch-HHHHHHhhc
Q 016290           94 RMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HLGEFLALT  172 (392)
Q Consensus        94 ~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G-~~a~~L~lt  172 (392)
                      ..+++...+..++||+||++||+|+|||++++++||+||++++++|++||+++|++|+.|++++|+|++| ..+.+++++
T Consensus        81 ~~~~~~~~i~~~~~p~Ia~v~G~a~g~G~~la~~~D~~i~~~~~~~~~pe~~~G~~p~~g~~~~l~~~~g~~~a~~~~l~  160 (195)
T cd06558          81 ELQELLRALLRLPKPVIAAVNGAALGGGLELALACDIRIAAEDAKFGLPEVKLGLVPGGGGTQRLPRLVGPARARELLLT  160 (195)
T ss_pred             HHHHHHHHHHcCCCCEEEEECCeeecHHHHHHHhCCEEEecCCCEEechhhhcCCCCCCcHHHHHHHHhCHHHHHHHHHc
Confidence            8889999999999999999999999999999999999999999999999999999999999999999998 899999999


Q ss_pred             CCcccHHHHHHcCccceecCCCChHHHHHHH
Q 016290          173 GARLNGKELVAAGLATHFVPSEKLPELEKRL  203 (392)
Q Consensus       173 G~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l  203 (392)
                      |+.++++||+++||++++++.+++.+.+.++
T Consensus       161 g~~~~a~ea~~~Glv~~~~~~~~l~~~a~~~  191 (195)
T cd06558         161 GRRISAEEALELGLVDEVVPDEELLAAALEL  191 (195)
T ss_pred             CCccCHHHHHHcCCCCeecChhHHHHHHHHH
Confidence            9999999999999999999998877655555

This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole.

>KOG1682 consensus Enoyl-CoA isomerase [Lipid transport and metabolism]

Probab=100.00  E-value=1.4e-39  Score=285.46  Aligned_cols=254  Identities=25%  Similarity=0.347  Sum_probs=225.0

Q ss_pred             CcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhHHHH
Q 016290           12 QVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEV   91 (392)
Q Consensus        12 ~~V~~~~~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~~~   91 (392)
                      ...+++.+++|+.|+||+|+|+|.|+.+|+.+|..+|..-.++.++|+|||+..|+.||+|.|++++......+. -...
T Consensus        32 ~~g~~~~~~gvR~i~l~npKk~NtLSLaM~~~Lq~~ll~d~d~~dlr~viita~GkifSaGH~LKELt~e~g~d~-haev  110 (287)
T KOG1682|consen   32 DLGLVKEHNGVREITLNNPKKLNTLSLAMMCALQDALLKDKDNLDLRCVIITAQGKIFSAGHNLKELTNEPGSDI-HAEV  110 (287)
T ss_pred             cccccccccceeeeeecCccccchhhHHHHHHHHHHHhhcccccceeEEEEecCCccccccccHHHhhcCccchH-HHHH
Confidence            346777889999999999999999999999999999999888889999999999999999999999987443222 2678


Q ss_pred             HHHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcch-HHHHHHh
Q 016290           92 VYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HLGEFLA  170 (392)
Q Consensus        92 ~~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G-~~a~~L~  170 (392)
                      |+...+++..|.++|.||||-|||.+...||.|...||++||+++++|+.|-.++|+|...-|. -|.|.+. ..++||+
T Consensus       111 Fqtc~dvmn~Irn~pVPVia~VNG~AaAAGcQLVaSCD~vVa~k~SkF~tPG~~vGlFCSTPGv-AlaRavpRkva~~ML  189 (287)
T KOG1682|consen  111 FQTCTDVMNDIRNLPVPVIAKVNGYAAAAGCQLVASCDMVVATKNSKFSTPGAGVGLFCSTPGV-ALARAVPRKVAAYML  189 (287)
T ss_pred             HHHHHHHHHHHhcCCCceEEEecchhhhccceEEEeeeEEEEecCccccCCCCceeeEecCcch-hHhhhcchhHHHHHH
Confidence            8999999999999999999999999999999999999999999999999999999998554443 3778777 8999999


Q ss_pred             hcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHhCcCCHHH
Q 016290          171 LTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKETVAE  250 (392)
Q Consensus       171 ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~ee  250 (392)
                      +||.+++++||+..||++.+||.++++..++.+                                               
T Consensus       190 ~Tg~Pi~~eeAl~sGlvskvVp~~el~~e~~~i-----------------------------------------------  222 (287)
T KOG1682|consen  190 MTGLPITGEEALISGLVSKVVPAEELDKEIEEI-----------------------------------------------  222 (287)
T ss_pred             HhCCCCchHHHHHhhhhhhcCCHHHHHHHHHHH-----------------------------------------------
Confidence            999999999999999999999999987543333                                               


Q ss_pred             HHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHhc
Q 016290          251 IIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGIRALTIE  330 (392)
Q Consensus       251 i~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eGv~a~l~d  330 (392)
                                          ...|...|..-+...|+.......++-.+++..-.+..+.-+.-   .|.+|||.+|+ +
T Consensus       223 --------------------~~~i~~~srav~slgk~f~y~q~~ms~~ea~~~~~~~m~~n~ql---~d~kegiasf~-~  278 (287)
T KOG1682|consen  223 --------------------TNAIKAKSRAVISLGKEFYYKQLAMSQAEAFSAAQEKMCENFQL---GDTKEGIASFF-E  278 (287)
T ss_pred             --------------------HHHHhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhcccc---cchHHHHHHHh-c
Confidence                                56777788888888999988888888899998888888887777   89999999999 6


Q ss_pred             cCCCCCCCC
Q 016290          331 KDNAPKWDP  339 (392)
Q Consensus       331 K~r~P~w~~  339 (392)
                      | |.|.|++
T Consensus       279 k-rp~~~~h  286 (287)
T KOG1682|consen  279 K-RPPNWKH  286 (287)
T ss_pred             c-CCCCcCC
Confidence            6 9999986

>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase

Probab=100.00  E-value=2.4e-38  Score=325.30  Aligned_cols=197  Identities=14%  Similarity=0.126  Sum_probs=167.1

Q ss_pred             CCCCCCcEEEEEeCCEEEEEEcCCC----------CCCCCCHHHHHHHHHHHHHHh-hCCCceEEEEEcCC-CccccCCC
Q 016290            7 KNPDEQVVLGEEIGNVRLVTLNRPR----------QLNVISSKVVSLLAEYLEKWE-KDDQAKLVIVKGVG-RAFSAGGD   74 (392)
Q Consensus         7 ~~~~~~~V~~~~~~~v~~itLnrp~----------~lNal~~~m~~~L~~~l~~~~-~d~~v~~Vvl~g~G-~~FcaG~D   74 (392)
                      .++.++.|.++++++|++||||||+          |+|+||.+|+.+|.++|+.++ .|+++|+|||||.+ ++||+|+|
T Consensus         6 ~~~~~~~v~~~~~g~Va~ItLnrpe~~~~~p~~~~k~Nal~~~~l~eL~~al~~~~~~d~~vRvVVLtg~~Gk~FcaG~D   85 (546)
T TIGR03222         6 EPSQYRHWKLTFDGPVATLTMDVDEDGGLRPGYKLKLNSYDLGVDIELHDAVQRIRFEHPEVRTVVMTSGKDRVFCSGAN   85 (546)
T ss_pred             CCCCCceEEEEeeCCEEEEEEecccccccCccccccCCCCCHHHHHHHHHHHHHHHhcCCCeeEEEEecCCCCCCcCCcC
Confidence            3556678999999999999999976          899999999999999999999 78999999999974 99999999


Q ss_pred             chhhccCCCCch-hHHHHHHH-HHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCC--eeeeccccc-cCcc
Q 016290           75 LKMFYDGRNSKD-SCLEVVYR-MYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEK--TVFSTPEAS-IGFH  149 (392)
Q Consensus        75 l~~l~~~~~~~~-~~~~~~~~-~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~--a~f~~PE~~-iGl~  149 (392)
                      ++++........ ....+... ...+...+.++|||+||+|||+|+|||++|+++||+||++++  ++|++||++ +|++
T Consensus        86 L~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~pkPvIAAVnG~a~GGG~~LALacD~rvAs~~a~a~f~~pEv~~lGl~  165 (546)
T TIGR03222        86 IFMLGLSTHAWKVNFCKFTNETRNGIEDSSRHSGLKFLAAVNGTCAGGGYELALACDEIMLVDDRSSSVSLPEVPLLGVL  165 (546)
T ss_pred             HHHHhccccchhhhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEEecCCCcEEEccchhccCcC
Confidence            998753211111 11112111 123455678999999999999999999999999999999986  799999997 9999


Q ss_pred             CCchhHHHHh--hcch-HHHHHHhhcCCcccHHHHHHcCccceecCCCChHHHHHHH
Q 016290          150 TDCGFSFIHS--RLPG-HLGEFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRL  203 (392)
Q Consensus       150 P~~G~s~~L~--rl~G-~~a~~L~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l  203 (392)
                      |++|++++++  +.+| .++++|+|||++++|+||+++||||++||++++.+.+.++
T Consensus       166 P~~gg~~~l~~~~~vg~~~A~~llltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~l  222 (546)
T TIGR03222       166 PGTGGLTRVTDKRRVRRDHADIFCTIEEGVRGKRAKEWRLVDEVVKPSQFDAAIAER  222 (546)
T ss_pred             CccchhhhccccchhCHHHHHHHHHcCCCccHHHHHHcCCceEEeChHHHHHHHHHH
Confidence            9999999997  6888 8999999999999999999999999999998887655544

In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.

>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional

Probab=100.00  E-value=2e-37  Score=319.53  Aligned_cols=197  Identities=17%  Similarity=0.173  Sum_probs=166.2

Q ss_pred             CCCCCCcEEEEEeCCEEEEEEcCC-------C---CCCCCCHHHHHHHHHHHHHHh-hCCCceEEEEEcCC-CccccCCC
Q 016290            7 KNPDEQVVLGEEIGNVRLVTLNRP-------R---QLNVISSKVVSLLAEYLEKWE-KDDQAKLVIVKGVG-RAFSAGGD   74 (392)
Q Consensus         7 ~~~~~~~V~~~~~~~v~~itLnrp-------~---~lNal~~~m~~~L~~~l~~~~-~d~~v~~Vvl~g~G-~~FcaG~D   74 (392)
                      +.+.++.+.++.+++|++||||||       +   ++|+||.+|+.+|.++++.++ +|++|++|||||.+ ++||+|+|
T Consensus        10 ~~~~~~~~~~e~~~~Va~ItLnrpe~~~~rP~~~~~~Nal~~~m~~eL~~al~~~~~~d~~vrvVVLtg~ggk~FcaG~D   89 (550)
T PRK08184         10 EPSQYRHWKLSFDGPVATLTMDVDEDGGLRPGYKLKLNSYDLGVDIELHDALQRIRFEHPEVRTVVVTSAKDRVFCSGAN   89 (550)
T ss_pred             CCCCCceEEEEeeCCEEEEEEcCccccccCcccccCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEEecCCCCCCCCccC
Confidence            346678899999999999999965       4   899999999999999999999 78999999999986 99999999


Q ss_pred             chhhccCCCCch-hHHHHHHHH-HHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCC--eeeeccccc-cCcc
Q 016290           75 LKMFYDGRNSKD-SCLEVVYRM-YWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEK--TVFSTPEAS-IGFH  149 (392)
Q Consensus        75 l~~l~~~~~~~~-~~~~~~~~~-~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~--a~f~~PE~~-iGl~  149 (392)
                      ++.+........ ....+.+.. ..+...+..+|||+||+|||+|+|||++|+++|||||++++  ++|++||++ +|++
T Consensus        90 L~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~pkPvIAAVnG~a~GGG~~LALacD~rIas~~~~a~fg~pEv~~~Gl~  169 (550)
T PRK08184         90 IFMLGGSSHAWKVNFCKFTNETRNGIEDSSRHSGLKFIAAVNGTCAGGGYELALACDEIVLVDDRSSAVSLPEVPLLGVL  169 (550)
T ss_pred             HHhHhccccchhhhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEEecCCCcEEEccchhccccC
Confidence            998754211110 011111111 12445678999999999999999999999999999999987  899999997 9999


Q ss_pred             CCchhHHHHh--hcch-HHHHHHhhcCCcccHHHHHHcCccceecCCCChHHHHHHH
Q 016290          150 TDCGFSFIHS--RLPG-HLGEFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRL  203 (392)
Q Consensus       150 P~~G~s~~L~--rl~G-~~a~~L~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l  203 (392)
                      |++|++++|+  |++| .++.+|++||++++|+||+++||||++||++++.+.+.++
T Consensus       170 P~~gg~~rl~~~~~vg~~~A~~llltG~~i~AeeA~~~GLVd~vv~~d~l~~~a~~~  226 (550)
T PRK08184        170 PGTGGLTRVTDKRKVRRDLADIFCTIEEGVRGKRAVDWRLVDEVVKPSKFDAKVAER  226 (550)
T ss_pred             CCcchHHHhhhhhhcCHHHHHHHHHhCCcccHHHHHHcCCccEeeCHHHHHHHHHHH
Confidence            9999999998  7788 8999999999999999999999999999998877654444

>PF13766 ECH_C: 2-enoyl-CoA Hydratase C-terminal region; PDB: 3JU1_A 3BPT_A

Probab=99.96  E-value=8.2e-29  Score=206.85  Aligned_cols=117  Identities=44%  Similarity=0.844  Sum_probs=102.4

Q ss_pred             HHHHHHHHHHHhCcCCHHHHHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHH
Q 016290          232 VLNKQSIIDECFSKETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINI  311 (392)
Q Consensus       232 ~~~~~~~i~~~f~~~~~eei~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~  311 (392)
                      +..+++.|++||+++|+++|+++|+.    ++.+||.++++.|.++||+|+++|.++++++...++++||++|+++..++
T Consensus         2 L~~~~~~I~~~F~~~s~~eI~~~L~~----~~~~~a~~~~~~l~~~SP~Sl~vt~~~l~~~~~~sl~e~l~~E~~~a~~~   77 (118)
T PF13766_consen    2 LAEHLEAIDRCFSADSVEEIIEALEA----DGDEWAQKTLETLRSGSPLSLKVTFEQLRRGRNLSLAECLRMEYRLASRC   77 (118)
T ss_dssp             CHHCHHHHHHHTTSSSHHHHHHHHHH----HS-HHHHHHHHHHCCS-HHHHHHHHHHHHCCTTS-HHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHhCCCCHHHHHHHHHc----cCcHHHHHHHHHHHHCCHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHH
Confidence            45678999999999999999999999    77899999999999999999999999999999999999999999999999


Q ss_pred             HHcCCccHHHHHHHHHHhccCCCCCCCCCCCCCCCHHHHhcccC
Q 016290          312 LRAIISADIYEGIRALTIEKDNAPKWDPPTLDKVDDDKVDLVFQ  355 (392)
Q Consensus       312 ~~~~~~~d~~eGv~a~l~dK~r~P~w~~~~l~~v~~~~v~~~f~  355 (392)
                      +.+   +||.|||||.||||++.|+|+|+++++|++++|++||+
T Consensus        78 ~~~---~DF~EGVRA~LIDKd~~P~W~p~~l~~V~~~~V~~~f~  118 (118)
T PF13766_consen   78 MRH---PDFAEGVRALLIDKDKNPKWSPASLEDVSDEDVDSFFE  118 (118)
T ss_dssp             HCC---SCHHHHHHHHTTS-------SSSSCCCS-HHHHHHHCS
T ss_pred             hcc---chHHHHHHHHHhcCCCCCCCCCCChHHCCHHHHHHHhC
Confidence            999   99999999999999999999999999999999999995

>cd07014 S49_SppA Signal peptide peptidase A

Probab=99.75  E-value=2.4e-18  Score=154.41  Aligned_cols=141  Identities=15%  Similarity=0.037  Sum_probs=113.0

Q ss_pred             HHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhHHHHHHHHHHHHHHHHhcCCeEEEEecCcee
Q 016290           39 KVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITM  118 (392)
Q Consensus        39 ~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~  118 (392)
                      -.+.+|.++++.++.|++|++|||++    +|.|+|+....              ...+++..+..++|||||++||.|.
T Consensus        22 ~~~~~l~~~l~~a~~d~~v~~vvl~~----~~~gg~~~~~~--------------~~~~~i~~~~~~~kpVia~v~G~a~   83 (177)
T cd07014          22 VSGDTTAAQIRDARLDPKVKAIVLRV----NSPGGSVTASE--------------VIRAELAAARAAGKPVVASGGGNAA   83 (177)
T ss_pred             cCHHHHHHHHHHHhcCCCceEEEEEe----eCCCcCHHHHH--------------HHHHHHHHHHhCCCCEEEEECCchh
Confidence            35689999999999999999999987    69999876421              1234566777899999999999999


Q ss_pred             cccccccccCceEEEeCCeeeeccccccCccCCchhHH--------HHhhcch---HHHHHHhhcCCcccHHHHHHcCcc
Q 016290          119 GGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSF--------IHSRLPG---HLGEFLALTGARLNGKELVAAGLA  187 (392)
Q Consensus       119 GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~--------~L~rl~G---~~a~~L~ltG~~l~a~eA~~~GLv  187 (392)
                      |||+.|+++||++++++++.|+.+.+..+.-+......        .+++..|   .....++..|..++|++|++.|||
T Consensus        84 g~g~~la~a~D~i~a~~~a~~~~~G~~~~~~~~~~~l~~~~~~~~~~v~~~rg~~~~~~~~~l~~g~~~~a~~A~~~GLV  163 (177)
T cd07014          84 SGGYWISTPANYIVANPSTLVGSIGIFGVQLADQLSIENGYKRFITLVADNRHSTPEQQIDKIAQGGVWTGQDAKANGLV  163 (177)
T ss_pred             HHHHHHHHhCCEEEECCCCeEEEechHhhHHHHHHHHHHHHHHHHHHHHHhCCCCHHHhHHHhcCcCeEeHHHHHHcCCc
Confidence            99999999999999999999999987776433222222        3334334   456778889999999999999999


Q ss_pred             ceecCCCChH
Q 016290          188 THFVPSEKLP  197 (392)
Q Consensus       188 ~~vv~~~~l~  197 (392)
                      |.+.+.+++.
T Consensus       164 D~v~~~~e~~  173 (177)
T cd07014         164 DSLGSFDDAV  173 (177)
T ss_pred             ccCCCHHHHH
Confidence            9999865543

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is an intramembrane enzyme found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be ClpP-like serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain, cleaving peptide bonds in the plane of the lipid bilayer. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal p

>cd07020 Clp_protease_NfeD_1 Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease

Probab=99.75  E-value=6.8e-18  Score=152.75  Aligned_cols=145  Identities=13%  Similarity=0.130  Sum_probs=115.9

Q ss_pred             EEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhHHHHHHHHHHHHHHH
Q 016290           23 RLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYWLCHHI  102 (392)
Q Consensus        23 ~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~~~~~~~~~l~~~i  102 (392)
                      ++|.|+.     .++..+...+.+.|+.+++|+ ++.|+|.=.    |-||++..-                 ..+...|
T Consensus         2 ~vv~i~g-----~I~~~~~~~l~~~l~~a~~~~-~~~vvl~In----SpGG~v~~~-----------------~~i~~~l   54 (187)
T cd07020           2 YVLEING-----AITPATADYLERAIDQAEEGG-ADALIIELD----TPGGLLDST-----------------REIVQAI   54 (187)
T ss_pred             EEEEEee-----EEChHHHHHHHHHHHHHHhCC-CCEEEEEEE----CCCCCHHHH-----------------HHHHHHH
Confidence            5677763     477888899999999998765 788888521    555655431                 1344556


Q ss_pred             HhcCCeEEEEec---CceecccccccccCceEEEeCCeeeeccccccCccCCc--------------hhHHHHhhcchH-
Q 016290          103 HTYKKTQVALAH---GITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDC--------------GFSFIHSRLPGH-  164 (392)
Q Consensus       103 ~~~~kP~IA~v~---G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~--------------G~s~~L~rl~G~-  164 (392)
                      ..+|||+||+++   |+|+|||+.|+++||+||++++++|+++++..|..+..              +....+++..|. 
T Consensus        55 ~~~~kPvia~v~~~~G~AasgG~~iala~D~iva~p~a~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~  134 (187)
T cd07020          55 LASPVPVVVYVYPSGARAASAGTYILLAAHIAAMAPGTNIGAAHPVAIGGGGGSDPVMEKKILNDAVAYIRSLAELRGRN  134 (187)
T ss_pred             HhCCCCEEEEEecCCCCchhHHHHHHHhCCceeECCCCcEEeccccccCCCCcchHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            789999999999   99999999999999999999999999999985554432              245567787773 


Q ss_pred             --HHHHHhhcCCcccHHHHHHcCccceecCCC
Q 016290          165 --LGEFLALTGARLNGKELVAAGLATHFVPSE  194 (392)
Q Consensus       165 --~a~~L~ltG~~l~a~eA~~~GLv~~vv~~~  194 (392)
                        .+..++++|+.++|+||+++||+|+++++.
T Consensus       135 ~~~a~~~l~~g~~~~a~eA~~~Glvd~v~~~~  166 (187)
T cd07020         135 AEWAEKAVRESLSLTAEEALKLGVIDLIAADL  166 (187)
T ss_pred             HHHHHHHHHcCCeecHHHHHHcCCcccccCCH
Confidence              788999999999999999999999999875

Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially c

>cd07019 S49_SppA_1 Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad

Probab=99.56  E-value=6.9e-15  Score=135.59  Aligned_cols=88  Identities=17%  Similarity=0.144  Sum_probs=75.8

Q ss_pred             CCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhHHHHHHHHHHHHHHHHhcCCeEEEEec
Q 016290           35 VISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALAH  114 (392)
Q Consensus        35 al~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IA~v~  114 (392)
                      .-+..++.+|.++|+.+..||+|++|||+    .||+|+|+..+.              ..++.+..+..++||+||+++
T Consensus        17 ~~~~~~~~~l~~~l~~a~~d~~v~~ivL~----~~s~Gg~~~~~~--------------~~~~~l~~~~~~~kpVia~v~   78 (211)
T cd07019          17 TQGNVGGDTTAAQIRDARLDPKVKAIVLR----VNSPGGSVTASE--------------VIRAELAAARAAGKPVVVSAG   78 (211)
T ss_pred             CCCccCHHHHHHHHHHHhhCCCceEEEEE----EcCCCcCHHHHH--------------HHHHHHHHHHhCCCCEEEEEC
Confidence            33455789999999999999999999997    899999997652              113345667888999999999


Q ss_pred             CceecccccccccCceEEEeCCeeee
Q 016290          115 GITMGGGASLMVPLKFSVVTEKTVFS  140 (392)
Q Consensus       115 G~a~GgG~~lal~~d~riate~a~f~  140 (392)
                      |.|.|+|+.|+++||++++++.+.|+
T Consensus        79 g~a~s~gy~la~~aD~i~a~~~a~~g  104 (211)
T cd07019          79 GAAASGGYWISTPANYIVANPSTLTG  104 (211)
T ss_pred             CeehhHHHHHHHhCCEEEEcCCCEEE
Confidence            99999999999999999999999886

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppAs in this subfamily are found in all three domains of life and are involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-te

>cd00394 Clp_protease_like Caseinolytic protease (ClpP) is an ATP-dependent protease

Probab=99.49  E-value=1.7e-13  Score=120.80  Aligned_cols=134  Identities=16%  Similarity=0.144  Sum_probs=104.0

Q ss_pred             CCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhHHHHHHHHHHHHHHHHhcCCeEEEEecC
Q 016290           36 ISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALAHG  115 (392)
Q Consensus        36 l~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IA~v~G  115 (392)
                      ++..++.+|.+.|+.++.|+.++.|+|..    .|.|+|+...                 ..+...|..++||+|+.++|
T Consensus         8 I~~~~~~~l~~~l~~a~~d~~~~~ivl~~----~s~Gg~~~~~-----------------~~i~~~l~~~~kpvva~~~g   66 (161)
T cd00394           8 IEDVSADQLAAQIRFAEADNSVKAIVLEV----NTPGGRVDAG-----------------MNIVDALQASRKPVIAYVGG   66 (161)
T ss_pred             EccchHHHHHHHHHHHHhCCCCceEEEEE----ECCCcCHHHH-----------------HHHHHHHHHhCCCEEEEECC
Confidence            56688999999999999999999999975    4788876432                 23455677788999999999


Q ss_pred             ceecccccccccCceEEEeCCeeeeccccccCccCCchhH------HH----Hhhcch----------HHHHHHhhcCCc
Q 016290          116 ITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFS------FI----HSRLPG----------HLGEFLALTGAR  175 (392)
Q Consensus       116 ~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s------~~----L~rl~G----------~~a~~L~ltG~~  175 (392)
                      .|.++|+.|+++||.|++.+++.|++.....+.....+-.      ..    ..+...          .....++.+|..
T Consensus        67 ~~~s~g~~la~~~d~~~~~~~a~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~r~~~~~~~~~~~~~~~~  146 (161)
T cd00394          67 QAASAGYYIATAANKIVMAPGTRVGSHGPIGGYGGNGNPTAQEADQRIILYFIARFISLVAENRGQTTEKLEEDIEKDLV  146 (161)
T ss_pred             hhHHHHHHHHhCCCEEEECCCCEEEEeeeEEecCCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHhcCCcE
Confidence            9999999999999999999999999988876654321000      11    122221          124566778999


Q ss_pred             ccHHHHHHcCcccee
Q 016290          176 LNGKELVAAGLATHF  190 (392)
Q Consensus       176 l~a~eA~~~GLv~~v  190 (392)
                      ++++||++.||||++
T Consensus       147 ~~a~eA~~~GLvD~i  161 (161)
T cd00394         147 LTAQEALEYGLVDAL  161 (161)
T ss_pred             EcHHHHHHcCCcCcC
Confidence            999999999999975

Clp protease (caseinolytic protease; ClpP; endopeptidase Clp; Peptidase S14; ATP-dependent protease, ClpAP)-like enzymes are highly conserved serine proteases and belong to the ClpP/Crotonase superfamily. Included in this family are Clp proteases that are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. The functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP. Active site consists of the triad Ser, His and Asp, preferring hydrophobic or non-polar residues at P1 or P1' positions. The protease exists as a tetradec

>cd07022 S49_Sppa_36K_type Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad

Probab=99.44  E-value=6.8e-13  Score=122.63  Aligned_cols=93  Identities=17%  Similarity=0.143  Sum_probs=74.5

Q ss_pred             cCCCCCCCC-CHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhHHHHHHHHHHHHHHHHhc-
Q 016290           28 NRPRQLNVI-SSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYWLCHHIHTY-  105 (392)
Q Consensus        28 nrp~~lNal-~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~~~~~~~~~l~~~i~~~-  105 (392)
                      ++|..+|++ +..|+.+|.++|+.+++|++|++|||+.    +|.|+++...          .       .+...|..+ 
T Consensus        13 ~~~~~~~~~~~~~~~~~l~~~l~~a~~d~~i~~Vvl~~----~s~gg~~~~~----------~-------~l~~~l~~~~   71 (214)
T cd07022          13 PRGSWLEASSGLTSYEGIAAAIRAALADPDVRAIVLDI----DSPGGEVAGV----------F-------ELADAIRAAR   71 (214)
T ss_pred             CCCCcccCCCCcccHHHHHHHHHHHhhCCCCcEEEEEE----eCCCCcHHHH----------H-------HHHHHHHHHh
Confidence            566666764 5789999999999999999999999975    5777765432          1       122333444 


Q ss_pred             -CCeEEEEecCceecccccccccCceEEEeCCeeeec
Q 016290          106 -KKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFST  141 (392)
Q Consensus       106 -~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~  141 (392)
                       +|||||+++|.|.|||+.++++||++++++.+.|+.
T Consensus        72 ~~KpViA~v~g~a~s~gy~lA~~aD~i~a~~~a~~g~  108 (214)
T cd07022          72 AGKPIVAFVNGLAASAAYWIASAADRIVVTPTAGVGS  108 (214)
T ss_pred             cCCCEEEEECCchhhHHHHHHhcCCEEEEcCCCeEEe
Confidence             599999999999999999999999999999998754

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 36K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily are all bacterial and include sohB peptidase and protein C. These are sometimes referred to as 36K type since they contain only one domain, unlike E. coli SppA that also contains an amino-terminal domain. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases.

>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type

Probab=99.44  E-value=2.2e-13  Score=142.88  Aligned_cols=157  Identities=17%  Similarity=0.136  Sum_probs=119.3

Q ss_pred             EeCCEEEEEEcCCCC--CCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhHHHHHHHH
Q 016290           18 EIGNVRLVTLNRPRQ--LNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRM   95 (392)
Q Consensus        18 ~~~~v~~itLnrp~~--lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~~~~~~~   95 (392)
                      .+++|++|+++.+=.  .|..+....+.+.+.|+.+..|++|++|||+-.    |.||+....          ..    .
T Consensus       306 ~~~~vavI~~~G~I~~~~~~~~~~~~~~~~~~l~~a~~D~~VkaIVLrin----SpGGs~~as----------e~----i  367 (584)
T TIGR00705       306 VQDKIGIVHLEGPIADGRDTEGNTGGDTVAALLRVARSDPDIKAVVLRIN----SPGGSVFAS----------EI----I  367 (584)
T ss_pred             CCCeEEEEEEEEEEcCCCCcccccCHHHHHHHHHHHhhCCCceEEEEEec----CCCCCHHHH----------HH----H
Confidence            467899999987532  244444456788899999999999999999854    333332110          11    1


Q ss_pred             HHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeee------eccc------cccCccCCchhHHHHhh---
Q 016290           96 YWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVF------STPE------ASIGFHTDCGFSFIHSR---  160 (392)
Q Consensus        96 ~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f------~~PE------~~iGl~P~~G~s~~L~r---  160 (392)
                      ++.+..+...+|||||.++|.|.+||..++++||.++|++.|.+      +++.      .++|+.|++..+..+.+   
T Consensus       368 ~~~i~~~~~~gKPVva~~~g~aaSggY~iA~aaD~I~a~p~t~~GSIGv~~~~~~~~~~l~klGi~~~~~~t~~~~~~s~  447 (584)
T TIGR00705       368 RRELARAQARGKPVIVSMGAMAASGGYWIASAADYIVASPNTITGSIGVFSVLPTFENSLDRIGVHVDGVSTHELANVSL  447 (584)
T ss_pred             HHHHHHHHhCCCcEEEEECCccccHHHHHHHhCCEEEECCCCeeecCEEEEEccCHHHHHHhcCCceEEEeccCcCCCCC
Confidence            23344456678999999999999999999999999999999977      6663      68999998877765553   


Q ss_pred             -------------------------cch-HH-----HHHHhhcCCcccHHHHHHcCccceecC
Q 016290          161 -------------------------LPG-HL-----GEFLALTGARLNGKELVAAGLATHFVP  192 (392)
Q Consensus       161 -------------------------l~G-~~-----a~~L~ltG~~l~a~eA~~~GLv~~vv~  192 (392)
                                               .++ .+     ....+++|+.++|+||+++||||++-.
T Consensus       448 ~~~~t~~~~~~~~~~l~~~y~~F~~~Va~~R~l~~e~v~~ia~Grv~tg~eA~~~GLVD~ig~  510 (584)
T TIGR00705       448 LRPLTAEDQAIMQLSVEAGYRRFLSVVSAGRNLTPTQVDKVAQGRVWTGEDAVSNGLVDALGG  510 (584)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHhCCCcCHHHHHHcCCcccCCC
Confidence                                     333 33     677889999999999999999999953

E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.

>cd07023 S49_Sppa_N_C Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad

Probab=99.36  E-value=4.2e-12  Score=116.79  Aligned_cols=100  Identities=20%  Similarity=0.224  Sum_probs=80.4

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhHHHHHHHHHHHHHH
Q 016290           22 VRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYWLCHH  101 (392)
Q Consensus        22 v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~~~~~~~~~l~~~  101 (392)
                      |++|.++-+=...  ...++.+|.++|+.++.|+++++|+|++    +|.|+|+....              ..++.+..
T Consensus         2 v~vi~i~g~i~~~--~~~~~~~l~~~l~~a~~d~~i~~ivl~~----~s~Gg~~~~~~--------------~i~~~i~~   61 (208)
T cd07023           2 IAVIDIEGTISDG--GGIGADSLIEQLRKAREDDSVKAVVLRI----NSPGGSVVASE--------------EIYREIRR   61 (208)
T ss_pred             EEEEEEEEEEcCC--CCCCHHHHHHHHHHHHhCCCCcEEEEEE----ECCCCCHHHHH--------------HHHHHHHH
Confidence            5666666431100  3789999999999999999999999988    48899986521              12345567


Q ss_pred             HHhcCCeEEEEecCceecccccccccCceEEEeCCeeeec
Q 016290          102 IHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFST  141 (392)
Q Consensus       102 i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~  141 (392)
                      +..++||+||+++|.|.|+|+.|+++||+|++++.+.|+.
T Consensus        62 ~~~~~kpvia~v~g~~~s~g~~lA~aaD~i~a~~~s~~g~  101 (208)
T cd07023          62 LRKAKKPVVASMGDVAASGGYYIAAAADKIVANPTTITGS  101 (208)
T ss_pred             HHhcCCcEEEEECCcchhHHHHHHhhCCEEEECCCCeEEe
Confidence            7888999999999999999999999999999999998853

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. This subfamily contains members with either a single domain (sometimes referred to as 36K type), such as sohB peptidase, protein C and archaeal signal peptide peptidase, or an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad

>cd07016 S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease

Probab=99.35  E-value=2.7e-12  Score=113.14  Aligned_cols=128  Identities=13%  Similarity=0.121  Sum_probs=94.9

Q ss_pred             HHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhHHHHHHHHHHHHHHHHhcCCeEEEEecCcee
Q 016290           39 KVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITM  118 (392)
Q Consensus        39 ~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~  118 (392)
                      .+...+.+.|+.++.++.+ .+.|.+.      ||++..                 ...+...|..++||+|++++|.|.
T Consensus        15 ~~~~~~~~~l~~~~~~~~i-~l~insp------GG~~~~-----------------~~~i~~~i~~~~~pvi~~v~g~a~   70 (160)
T cd07016          15 VTAKEFKDALDALGDDSDI-TVRINSP------GGDVFA-----------------GLAIYNALKRHKGKVTVKIDGLAA   70 (160)
T ss_pred             cCHHHHHHHHHhccCCCCE-EEEEECC------CCCHHH-----------------HHHHHHHHHhcCCCEEEEEcchHH
Confidence            5677888888888877433 3444444      444321                 134666778889999999999999


Q ss_pred             cccccccccCceEEEeCCeeeeccccccCccCCchh---------------HHHHhhcch---HHHHHHhhcCCcccHHH
Q 016290          119 GGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGF---------------SFIHSRLPG---HLGEFLALTGARLNGKE  180 (392)
Q Consensus       119 GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~---------------s~~L~rl~G---~~a~~L~ltG~~l~a~e  180 (392)
                      |+|+.++++||+|++++++.|+++....|..+....               ...+++..|   .....++.++..++++|
T Consensus        71 s~g~~ia~a~d~~~~~~~a~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~l~a~e  150 (160)
T cd07016          71 SAASVIAMAGDEVEMPPNAMLMIHNPSTGAAGNADDLRKAADLLDKIDESIANAYAEKTGLSEEEISALMDAETWLTAQE  150 (160)
T ss_pred             hHHHHHHhcCCeEEECCCcEEEEECCccccCcCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhCCeECcHHH
Confidence            999999999999999999999998887666544322               222555556   34556666667899999


Q ss_pred             HHHcCcccee
Q 016290          181 LVAAGLATHF  190 (392)
Q Consensus       181 A~~~GLv~~v  190 (392)
                      |+++||+|++
T Consensus       151 A~~~GliD~v  160 (160)
T cd07016         151 AVELGFADEI  160 (160)
T ss_pred             HHHcCCCCcC
Confidence            9999999975

Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. This subfamily only contains bacterial sequences. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which a

>TIGR00706 SppA_dom signal peptide peptidase SppA, 36K type

Probab=99.24  E-value=3.7e-11  Score=110.50  Aligned_cols=149  Identities=14%  Similarity=0.157  Sum_probs=101.1

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhHHHHHHHHHHHHHH
Q 016290           22 VRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYWLCHH  101 (392)
Q Consensus        22 v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~~~~~~~~~l~~~  101 (392)
                      |++|+++-+=     + ....+|.++|+.+..|+++++|||++.    |.|+|+...                 ..+...
T Consensus         2 v~vi~i~g~i-----~-~s~~~l~~~l~~a~~d~~i~~vvl~~~----s~Gg~~~~~-----------------~~l~~~   54 (207)
T TIGR00706         2 IAILPVSGAI-----A-VSPEDFDKKIKRIKDDKSIKALLLRIN----SPGGTVVAS-----------------EEIYEK   54 (207)
T ss_pred             EEEEEEEEEE-----e-cCHHHHHHHHHHHhhCCCccEEEEEec----CCCCCHHHH-----------------HHHHHH
Confidence            5566666432     1 235788999999999999999999874    888877642                 223445


Q ss_pred             HHhcC--CeEEEEecCceecccccccccCceEEEeCCeeeecccc------------ccCccCC---------chhH---
Q 016290          102 IHTYK--KTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEA------------SIGFHTD---------CGFS---  155 (392)
Q Consensus       102 i~~~~--kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~------------~iGl~P~---------~G~s---  155 (392)
                      |..++  ||+||+++|.|.|||+.|+++||.+++++++.++.--+            ++|+-+.         .+..   
T Consensus        55 i~~~~~~kpvia~v~g~a~s~g~~la~aaD~i~a~p~a~vg~iGv~~~~~~~~~~l~k~Gv~~~~~~~g~~K~~~~~~~~  134 (207)
T TIGR00706        55 LKKLKAKKPVVASMGGVAASGGYYIAMAADEIVANPGTITGSIGVILQGANVEKLYEKLGIEFEVIKSGEYKDIGSPTRE  134 (207)
T ss_pred             HHHhcCCCCEEEEECCccchHHHHHHhcCCEEEECCCCeEEeeeEEEecCCHHHHHHhCCceEEEEEcCCCcCCCCCCCC
Confidence            55565  99999999999999999999999999999987654222            2333210         0000   


Q ss_pred             ------HHHh-----------------hcchHHHHHHhhcCCcccHHHHHHcCccceecCCCChH
Q 016290          156 ------FIHS-----------------RLPGHLGEFLALTGARLNGKELVAAGLATHFVPSEKLP  197 (392)
Q Consensus       156 ------~~L~-----------------rl~G~~a~~L~ltG~~l~a~eA~~~GLv~~vv~~~~l~  197 (392)
                            -.+.                 |-...-...=++.|+.+++++|++.||||.+...+++.
T Consensus       135 ~s~~~~e~~~~~l~~~~~~f~~~va~~R~~~~~~~~~~~~~~~~~~~~A~~~gLvD~i~~~~~~~  199 (207)
T TIGR00706       135 LTPEERDILQNLVNESYEQFVQVVAKGRNLPVEDVKKFADGRVFTGRQALKLRLVDKLGTEDDAL  199 (207)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcCCcccHHHHHHcCCCcccCCHHHHH
Confidence                  0111                 11111111223678999999999999999997655544

The member of this family from Bacillus subtilis was shown to have properties consistent with a role in degrading signal peptides after cleavage from precursor proteins, although it was not demonstrated conclusively.

>cd07021 Clp_protease_NfeD_like Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease

Probab=99.15  E-value=3.6e-10  Score=101.29  Aligned_cols=140  Identities=14%  Similarity=0.188  Sum_probs=100.8

Q ss_pred             EEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhHHHHHHHHHHHHHHH
Q 016290           23 RLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYWLCHHI  102 (392)
Q Consensus        23 ~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~~~~~~~~~l~~~i  102 (392)
                      .+|.++.     .+++.+...|.++|+.+++++ +..|+|.=.    |.||++...                 ..+...|
T Consensus         2 ~vi~i~g-----~I~~~~~~~l~~~l~~a~~~~-~~~ivl~in----spGG~v~~~-----------------~~I~~~l   54 (178)
T cd07021           2 YVIPIEG-----EIDPGLAAFVERALKEAKEEG-ADAVVLDID----TPGGRVDSA-----------------LEIVDLI   54 (178)
T ss_pred             EEEEEee-----EECHHHHHHHHHHHHHHHhCC-CCeEEEEEE----CcCCCHHHH-----------------HHHHHHH
Confidence            4566653     467788899999999999886 677777432    445544321                 3456777


Q ss_pred             HhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchh--------HHH------Hhhcch---HH
Q 016290          103 HTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGF--------SFI------HSRLPG---HL  165 (392)
Q Consensus       103 ~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~--------s~~------L~rl~G---~~  165 (392)
                      ..+++|+|++|+|.|.|+|+-++++||++++++++.|+.+..    ++..|+        +.+      ++..-|   ..
T Consensus        55 ~~~~~pvva~V~g~AaSaG~~ia~a~d~i~m~p~a~iG~~~~----v~~~~~~~~~~K~~~~~~~~~~~~A~~~gr~~~~  130 (178)
T cd07021          55 LNSPIPTIAYVNDRAASAGALIALAADEIYMAPGATIGAAEP----IPGDGNGAADEKVQSYWRAKMRAAAEKKGRDPDI  130 (178)
T ss_pred             HhCCCCEEEEECCchHHHHHHHHHhCCeEEECCCCeEecCee----EcCCCccchhHHHHHHHHHHHHHHHHHhCCCHHH
Confidence            889999999999999999999999999999999999998854    333333        122      111223   24


Q ss_pred             HHHHhhcC-------------CcccHHHHHHcCccceecCC
Q 016290          166 GEFLALTG-------------ARLNGKELVAAGLATHFVPS  193 (392)
Q Consensus       166 a~~L~ltG-------------~~l~a~eA~~~GLv~~vv~~  193 (392)
                      +..++--.             -.++++||++.|++|.++++
T Consensus       131 a~~mv~~~~~v~~~~~~~~~~l~lta~eA~~~g~~d~ia~~  171 (178)
T cd07021         131 AEAMVDKDIEVPGVGIKGGELLTLTADEALKVGYAEGIAGS  171 (178)
T ss_pred             HHHHhhhhcccccccccccceeeeCHHHHHHhCCeEEEECC
Confidence            44443333             26999999999999999864

Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentiall

>cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad

Probab=99.08  E-value=5.8e-10  Score=103.64  Aligned_cols=90  Identities=19%  Similarity=0.076  Sum_probs=74.6

Q ss_pred             CCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhHHHHHHHHHHHHHHHHhcCCeEEEEe
Q 016290           34 NVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALA  113 (392)
Q Consensus        34 Nal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IA~v  113 (392)
                      +.-+..++.+|.++|+++..|+.|++|||+..+..| ++.++.++                 ++.+..+...+|||||.+
T Consensus        24 ~~~~~~~~~~l~~~l~~a~~d~~ik~vvL~~~s~gg-~~~~~~el-----------------~~~i~~~~~~~kpVia~~   85 (222)
T cd07018          24 GESSELSLRDLLEALEKAAEDDRIKGIVLDLDGLSG-GLAKLEEL-----------------RQALERFRASGKPVIAYA   85 (222)
T ss_pred             CCcCCccHHHHHHHHHHHhcCCCeEEEEEECCCCCC-CHHHHHHH-----------------HHHHHHHHHhCCeEEEEe
Confidence            344578899999999999999999999999988666 66555544                 234444566799999999


Q ss_pred             cCceecccccccccCceEEEeCCeeeecc
Q 016290          114 HGITMGGGASLMVPLKFSVVTEKTVFSTP  142 (392)
Q Consensus       114 ~G~a~GgG~~lal~~d~riate~a~f~~P  142 (392)
                      +| +.+||+.|+++||.+++.+.+.|+..
T Consensus        86 ~~-~~sggy~lasaad~I~a~p~~~vg~i  113 (222)
T cd07018          86 DG-YSQGQYYLASAADEIYLNPSGSVELT  113 (222)
T ss_pred             CC-CCchhhhhhhhCCEEEECCCceEEee
Confidence            98 88999999999999999999998884

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys

>cd07015 Clp_protease_NfeD Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease

Probab=98.61  E-value=6.1e-07  Score=79.85  Aligned_cols=144  Identities=13%  Similarity=0.195  Sum_probs=101.8

Q ss_pred             EEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhHHHHHHHHHHHHHHH
Q 016290           23 RLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYWLCHHI  102 (392)
Q Consensus        23 ~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~~~~~~~~~l~~~i  102 (392)
                      .+|.++.     .+++.+...|.+.|+.+++| .++.|+|.=.    |-||++...                 ..+...|
T Consensus         2 ~vi~i~G-----~I~~~~~~~l~~~l~~A~~~-~~~~i~l~in----SPGG~v~~~-----------------~~I~~~i   54 (172)
T cd07015           2 YVAQIKG-----QITSYTYDQFDRYITIAEQD-NAEAIIIELD----TPGGRADAA-----------------GNIVQRI   54 (172)
T ss_pred             EEEEEee-----EECHhHHHHHHHHHHHHhcC-CCCeEEEEEE----CCCCCHHHH-----------------HHHHHHH
Confidence            3455543     36778888899999998765 5777777532    555554432                 1234455


Q ss_pred             HhcCCeEEEEec---CceecccccccccCceEEEeCCeeeeccccccCccCC----ch----hHHHHhhc------ch--
Q 016290          103 HTYKKTQVALAH---GITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTD----CG----FSFIHSRL------PG--  163 (392)
Q Consensus       103 ~~~~kP~IA~v~---G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~----~G----~s~~L~rl------~G--  163 (392)
                      ...++||++.++   |.|..+|.-++++||.+++.+++.++....-.|..++    ..    .+..+.++      -|  
T Consensus        55 ~~~~~pvv~~v~p~g~~AaSag~~I~~a~~~i~m~p~s~iG~~~pi~~~g~~~~~~~~~~ki~~~~~~~~r~~A~~~Gr~  134 (172)
T cd07015          55 QQSKIPVIIYVYPPGASAASAGTYIALGSHLIAMAPGTSIGACRPILGYSQNGSIIEAPPKITNYFIAYIKSLAQESGRN  134 (172)
T ss_pred             HhcCcCEEEEEecCCCeehhHHHHHHHhcCceEECCCCEEEEccccccCCCCCccccchHHHHHHHHHHHHHHHHHHCcC
Confidence            668999999999   9999999999999999999999999987764433220    00    12222222      22  


Q ss_pred             -HHHHHHhhcCCcccHHHHHHcCccceecCC
Q 016290          164 -HLGEFLALTGARLNGKELVAAGLATHFVPS  193 (392)
Q Consensus       164 -~~a~~L~ltG~~l~a~eA~~~GLv~~vv~~  193 (392)
                       ..+..++-....++++||++.|++|+++.+
T Consensus       135 ~~~a~~~v~~~~~lta~EA~~~G~iD~ia~~  165 (172)
T cd07015         135 ATIAEEFITKDLSLTPEEALKYGVIEVVARD  165 (172)
T ss_pred             HHHHHHHHHhhcCcCHHHHHHcCCceeeeCC
Confidence             345556666778999999999999999976

Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially cle

>PRK00277 clpP ATP-dependent Clp protease proteolytic subunit; Reviewed

Probab=98.58  E-value=4e-07  Score=83.21  Aligned_cols=141  Identities=18%  Similarity=0.158  Sum_probs=89.2

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhHHHHHHHHHHHHHH
Q 016290           22 VRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYWLCHH  101 (392)
Q Consensus        22 v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~~~~~~~~~l~~~  101 (392)
                      -++|.|+.|     ++..+...+...|..++.++..+-|.|.=.    |-|||+..                 ...+...
T Consensus        31 ~rii~i~g~-----I~~~~~~~i~~~L~~l~~~~~~~~I~l~In----SpGG~v~~-----------------g~~I~d~   84 (200)
T PRK00277         31 ERIIFLGGE-----VEDHMANLIVAQLLFLEAEDPDKDIYLYIN----SPGGSVTA-----------------GLAIYDT   84 (200)
T ss_pred             CcEEEECCE-----ECHHHHHHHHHHHHHhhccCCCCCEEEEEE----CCCCcHHH-----------------HHHHHHH
Confidence            345666543     789999999999998887644333333211    34454422                 1234455


Q ss_pred             HHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhH-----------HH-----------Hh
Q 016290          102 IHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFS-----------FI-----------HS  159 (392)
Q Consensus       102 i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s-----------~~-----------L~  159 (392)
                      |...+.|+++.+.|.|.+.|.-|++++     +++.++++|++.+++++..|++           ..           ++
T Consensus        85 i~~~~~~v~t~~~G~aaS~a~~I~~ag-----~~~~r~~~p~s~imih~p~~~~~G~a~di~~~a~~l~~~~~~~~~~~a  159 (200)
T PRK00277         85 MQFIKPDVSTICIGQAASMGAFLLAAG-----AKGKRFALPNSRIMIHQPLGGFQGQATDIEIHAREILKLKKRLNEILA  159 (200)
T ss_pred             HHhcCCCEEEEEEeEeccHHHHHHhcC-----CCCCEEEcCCceEEeccCcccccCChhHHHHHHHHHHHHHHHHHHHHH
Confidence            677788999999999999999888874     2344555555555555333321           11           11


Q ss_pred             hcch---HHHHHHhhcCCcccHHHHHHcCccceecCC
Q 016290          160 RLPG---HLGEFLALTGARLNGKELVAAGLATHFVPS  193 (392)
Q Consensus       160 rl~G---~~a~~L~ltG~~l~a~eA~~~GLv~~vv~~  193 (392)
                      ..-|   .....++-.+..++|+||++.||+|+++.+
T Consensus       160 ~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~Ii~~  196 (200)
T PRK00277        160 EHTGQPLEKIEKDTDRDNFMSAEEAKEYGLIDEVLTK  196 (200)
T ss_pred             HHHCcCHHHHHHHhhCCccccHHHHHHcCCccEEeec
Confidence            1112   223334445668999999999999999975

>cd07013 S14_ClpP Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease

Probab=98.58  E-value=1.9e-07  Score=82.48  Aligned_cols=134  Identities=16%  Similarity=0.072  Sum_probs=88.0

Q ss_pred             CCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhHHHHHHHHHHHHHHHHhcCCeEEEEecC
Q 016290           36 ISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALAHG  115 (392)
Q Consensus        36 l~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IA~v~G  115 (392)
                      ++..+..++...|..++.++.++.|+|.=.    |.||++..                 ...+...|..+++|+++.+.|
T Consensus         9 I~~~~~~~~~~~L~~l~~~~~~~~i~l~In----SpGG~v~~-----------------~~~i~~~i~~~~~~v~~~~~g   67 (162)
T cd07013           9 VEDISANQFAAQLLFLGAVNPEKDIYLYIN----SPGGDVFA-----------------GMAIYDTIKFIKADVVTIIDG   67 (162)
T ss_pred             ECcHHHHHHHHHHHHHhcCCCCCCEEEEEE----CCCCcHHH-----------------HHHHHHHHHhcCCCceEEEEe
Confidence            568899999999999998877777776432    45555421                 134556677789999999999


Q ss_pred             ceecccccccccCc--eEEEeCCeeeeccccccCccCCchhHHH----Hh-----------hcch---HHHHHHhhcCCc
Q 016290          116 ITMGGGASLMVPLK--FSVVTEKTVFSTPEASIGFHTDCGFSFI----HS-----------RLPG---HLGEFLALTGAR  175 (392)
Q Consensus       116 ~a~GgG~~lal~~d--~riate~a~f~~PE~~iGl~P~~G~s~~----L~-----------rl~G---~~a~~L~ltG~~  175 (392)
                      .|.++|.-++++||  .|++.+++.|.+....-|......-...    +-           +.-|   ..-..++-.+..
T Consensus        68 ~aaS~~~~i~~a~~~g~r~~~p~a~~~ih~~~~~~~g~~~d~~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~  147 (162)
T cd07013          68 LAASMGSVIAMAGAKGKRFILPNAMMMIHQPWGGTLGDATDMRIYADLLLKVEGNLVSAYAHKTGQSEEELHADLERDTW  147 (162)
T ss_pred             ehhhHHHHHHHcCCCCcEEEecCEEEEEccCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHcCCcc
Confidence            99999999999999  5777777776654322121100000000    11           1112   222334445666


Q ss_pred             ccHHHHHHcCcccee
Q 016290          176 LNGKELVAAGLATHF  190 (392)
Q Consensus       176 l~a~eA~~~GLv~~v  190 (392)
                      ++|+||++.||||++
T Consensus       148 ~sa~eA~~~GliD~i  162 (162)
T cd07013         148 LSAREAVEYGFADTI  162 (162)
T ss_pred             ccHHHHHHcCCCCcC
Confidence            799999999999975

Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. Additionally, they are implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of proteas

>KOG1683 consensus Hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase [Lipid transport and metabolism]

Probab=98.52  E-value=1.5e-07  Score=91.20  Aligned_cols=176  Identities=16%  Similarity=0.059  Sum_probs=141.6

Q ss_pred             EEEEEeC--CEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCC-CccccCCCchhhccCCCCchhHHH
Q 016290           14 VLGEEIG--NVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVG-RAFSAGGDLKMFYDGRNSKDSCLE   90 (392)
Q Consensus        14 V~~~~~~--~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G-~~FcaG~Dl~~l~~~~~~~~~~~~   90 (392)
                      .+++..+  +++.+.++ |++ |..|.+...+|..-|+.++.+..+++..+++.. +.|+||.|..+.+-+...  ....
T Consensus        57 ~L~~~~Dy~~~~~~dmv-iea-v~edl~Lk~~l~~~le~v~~~~~i~gsntSs~~~~~isa~ld~~e~vvg~h~--fspa  132 (380)
T KOG1683|consen   57 NLVETLDYTGFANADMV-IEA-VFEDLELKHELFKSLEKVEPPKCIRGSNTSSLDINVISAGLDRPEMVVGMHF--FSPA  132 (380)
T ss_pred             hccccccccccccccee-ccc-hhhhHHHHHHHHHHHHhhcCCcceeeeccccCChHHHhhccCchhhhccccc--cCHH
Confidence            4455555  78888888 776 999999999999999999999999999999998 999999999998764321  1255


Q ss_pred             HHHHHHHHHHHHHhcCCeEEEEecCceeccc--ccccccCceEEEe--CCeeeeccccccCc-cCCchhHHHHhhcchHH
Q 016290           91 VVYRMYWLCHHIHTYKKTQVALAHGITMGGG--ASLMVPLKFSVVT--EKTVFSTPEASIGF-HTDCGFSFIHSRLPGHL  165 (392)
Q Consensus        91 ~~~~~~~l~~~i~~~~kP~IA~v~G~a~GgG--~~lal~~d~riat--e~a~f~~PE~~iGl-~P~~G~s~~L~rl~G~~  165 (392)
                      ++-+..+++....+++.|+.+++||..--||  |-++-+|.|||.-  ..-..+..++..++ .|.+=.-.++....-..
T Consensus       133 ~~m~LlEii~~~~tS~~~iA~Ain~~~~~gk~~vvVg~c~gf~v~r~l~~y~~~~~~~l~e~g~~p~~iD~~~t~fGf~~  212 (380)
T KOG1683|consen  133 HWMQLLEIILALYTSKLTIATAINGGSPAGKLPVVVGNCCGFRVNRLLPPYTIGLNELLLEIGADPWLIDSLITKFGFRV  212 (380)
T ss_pred             HHHHHHHHHHhcCCCchHHHHHHhcccccCCccEEeccCCceEEEecccHHHHHHHHHHHHcCCCHHHHHHHHHhcCccc
Confidence            6677788999999999999999999998888  8889999999997  44445788888884 44443333333332266


Q ss_pred             HHHHhhcCCcccHHHHHHcCccceecCC
Q 016290          166 GEFLALTGARLNGKELVAAGLATHFVPS  193 (392)
Q Consensus       166 a~~L~ltG~~l~a~eA~~~GLv~~vv~~  193 (392)
                      |..-+--|.-++-.||++-|+++.+.|.
T Consensus       213 g~~~L~d~~gfdv~eal~~gl~~~~~~r  240 (380)
T KOG1683|consen  213 GERALADGVGFDVAEALAVGLGDEIGPR  240 (380)
T ss_pred             cHHHHhhccCccHHHHHhhccchhccch
Confidence            6666778899999999999999999985

>PRK12553 ATP-dependent Clp protease proteolytic subunit; Reviewed

Probab=98.31  E-value=7e-06  Score=75.46  Aligned_cols=144  Identities=16%  Similarity=0.098  Sum_probs=98.4

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhHHHHHHHHHHHHHH
Q 016290           22 VRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYWLCHH  101 (392)
Q Consensus        22 v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~~~~~~~~~l~~~  101 (392)
                      -+.|.|+.     -++..+..++...|..++..+..+.|.|.=.    |-||++..-                 ..+...
T Consensus        35 ~r~I~l~g-----~I~~~~~~~i~~~L~~l~~~~~~~~I~l~IN----SpGG~v~~g-----------------~~I~d~   88 (207)
T PRK12553         35 ERIIFLGG-----QVDDASANDVMAQLLVLESIDPDRDITLYIN----SPGGSVTAG-----------------DAIYDT   88 (207)
T ss_pred             CeEEEEcc-----eECHHHHHHHHHHHHHHHhCCCCCCEEEEEe----CCCCcHHHH-----------------HHHHHH
Confidence            34566664     3789999999999999987553344443211    445554321                 235566


Q ss_pred             HHhcCCeEEEEecCceecccccccccCc--eEEEeCCeeeecccccc-CccCCchhH------------------HHHhh
Q 016290          102 IHTYKKTQVALAHGITMGGGASLMVPLK--FSVVTEKTVFSTPEASI-GFHTDCGFS------------------FIHSR  160 (392)
Q Consensus       102 i~~~~kP~IA~v~G~a~GgG~~lal~~d--~riate~a~f~~PE~~i-Gl~P~~G~s------------------~~L~r  160 (392)
                      |..++.|+++.+.|.|.+.|.-++++||  .|++.+++.|.+..... |.  ..|-.                  ..+..
T Consensus        89 i~~~~~~v~t~~~G~aaSaa~lI~~ag~~~~R~~~p~s~imiH~p~~~~~--~~G~a~d~~~~~~~l~~~~~~~~~~ya~  166 (207)
T PRK12553         89 IQFIRPDVQTVCTGQAASAGAVLLAAGTPGKRFALPNARILIHQPSLGGG--IRGQASDLEIQAREILRMRERLERILAE  166 (207)
T ss_pred             HHhcCCCcEEEEEeehhhHHHHHHHcCCcCcEEECCCchhhhcCccccCC--CccCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7777889999999999999999999998  58999999988876543 21  11211                  11122


Q ss_pred             cch---HHHHHHhhcCCcccHHHHHHcCccceecCC
Q 016290          161 LPG---HLGEFLALTGARLNGKELVAAGLATHFVPS  193 (392)
Q Consensus       161 l~G---~~a~~L~ltG~~l~a~eA~~~GLv~~vv~~  193 (392)
                      .-|   .....++-.+..++|+||++.||||+++.+
T Consensus       167 ~tg~~~e~i~~~~~~~~~lta~EA~e~GliD~I~~~  202 (207)
T PRK12553        167 HTGQSVEKIRKDTDRDKWLTAEEAKDYGLVDQIITS  202 (207)
T ss_pred             HhCCCHHHHHHHHhcCccccHHHHHHcCCccEEcCc
Confidence            223   233444456788999999999999999965

>cd07017 S14_ClpP_2 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease

Probab=98.24  E-value=7e-06  Score=73.20  Aligned_cols=140  Identities=19%  Similarity=0.149  Sum_probs=97.2

Q ss_pred             EEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhHHHHHHHHHHHHHHH
Q 016290           23 RLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYWLCHHI  102 (392)
Q Consensus        23 ~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~~~~~~~~~l~~~i  102 (392)
                      ++|.|+-+     ++..+..++...|..+..++..+.|+|.=.    |-|||+..-                 ..+...|
T Consensus        10 r~i~i~g~-----I~~~~~~~i~~~l~~~~~~~~~~~i~l~in----SpGG~v~~~-----------------~~i~~~l   63 (171)
T cd07017          10 RIIFLGGP-----IDDEVANLIIAQLLYLESEDPKKPIYLYIN----SPGGSVTAG-----------------LAIYDTM   63 (171)
T ss_pred             cEEEEcCE-----EcHHHHHHHHHHHHHHHccCCCCceEEEEE----CCCCCHHHH-----------------HHHHHHH
Confidence            35666654     678899999999999998766555555322    445543321                 2344556


Q ss_pred             HhcCCeEEEEecCceecccccccccCc--eEEEeCCeeeeccccccCccCCchhHHH------Hh-----------hcch
Q 016290          103 HTYKKTQVALAHGITMGGGASLMVPLK--FSVVTEKTVFSTPEASIGFHTDCGFSFI------HS-----------RLPG  163 (392)
Q Consensus       103 ~~~~kP~IA~v~G~a~GgG~~lal~~d--~riate~a~f~~PE~~iGl~P~~G~s~~------L~-----------rl~G  163 (392)
                      ..++.|+++.+.|.|.++|.-++++||  .|++.+++.|.+.+...+..-.  ..-.      +.           ..-|
T Consensus        64 ~~~~~~v~t~~~g~aaS~~~~i~~~g~~~~r~~~~~a~~~~h~~~~~~~g~--~~~~~~~~~~l~~~~~~~~~~~~~~tg  141 (171)
T cd07017          64 QYIKPPVSTICLGLAASMGALLLAAGTKGKRYALPNSRIMIHQPLGGAGGQ--ASDIEIQAKEILRLRRRLNEILAKHTG  141 (171)
T ss_pred             HhcCCCEEEEEEeEehhHHHHHHHcCCCCCEEEccchHHHHcCCCccCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            677899999999999999999999999  8999999999988876654322  1111      10           1112


Q ss_pred             ---HHHHHHhhcCCcccHHHHHHcCcccee
Q 016290          164 ---HLGEFLALTGARLNGKELVAAGLATHF  190 (392)
Q Consensus       164 ---~~a~~L~ltG~~l~a~eA~~~GLv~~v  190 (392)
                         ..-..++-.+..++++||++.||+|+|
T Consensus       142 ~~~~~i~~~~~~~~~lta~EA~e~GiiD~V  171 (171)
T cd07017         142 QPLEKIEKDTDRDRYMSAEEAKEYGLIDKI  171 (171)
T ss_pred             CCHHHHHHHhhCCccccHHHHHHcCCCccC
Confidence               122333346777999999999999975

Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activ

>PRK10949 protease 4; Provisional

Probab=98.21  E-value=1.3e-05  Score=84.89  Aligned_cols=164  Identities=18%  Similarity=0.163  Sum_probs=103.0

Q ss_pred             eCCEEEEEEcC-----CCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhHHHHHH
Q 016290           19 IGNVRLVTLNR-----PRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVY   93 (392)
Q Consensus        19 ~~~v~~itLnr-----p~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~~~~~   93 (392)
                      .+.|++|+++-     ....+.++.   +.+.+.|+++..|++|++|||+-.    |.||....           .+   
T Consensus       325 ~~~Iavi~~~G~I~~g~~~~g~~~~---~~~~~~l~~a~~D~~vkaVvLrIn----SpGGs~~a-----------se---  383 (618)
T PRK10949        325 GGSIAVIFANGAIMDGEETPGNVGG---DTTAAQIRDARLDPKVKAIVLRVN----SPGGSVTA-----------SE---  383 (618)
T ss_pred             CCeEEEEEEEEEEcCCCCcCCCcCH---HHHHHHHHHHHhCCCCcEEEEEec----CCCCcHHH-----------HH---
Confidence            46788888763     222234444   467788999999999999999754    34443221           11   


Q ss_pred             HHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccc------------cccCccCCchhH------
Q 016290           94 RMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPE------------ASIGFHTDCGFS------  155 (392)
Q Consensus        94 ~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE------------~~iGl~P~~G~s------  155 (392)
                      ..++....+....|||||.+.|.|--||.-++++||.++|.+.|..+---            -++|+-+++-.+      
T Consensus       384 ~i~~~i~~~r~~gKPVvas~~~~aASggY~iA~aad~I~a~p~t~tGSIGV~~~~~~~~~ll~klGV~~~~~~~~~~~~~  463 (618)
T PRK10949        384 VIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVASPSTLTGSIGIFGVINTVENSLDSIGVHTDGVSTSPLADV  463 (618)
T ss_pred             HHHHHHHHHHhcCCcEEEEECCCCccHHHHHHHhcCEEEECCCCceeeCcEEEEccCHHHHHHhcCCceeEEeccccCCc
Confidence            12333444556789999999999999999999999999999976543311            124443321111      


Q ss_pred             -----------------------HHHhhc-----chHHHHHHhhcCCcccHHHHHHcCccceecCCCChHHHHHHH
Q 016290          156 -----------------------FIHSRL-----PGHLGEFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRL  203 (392)
Q Consensus       156 -----------------------~~L~rl-----~G~~a~~L~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l  203 (392)
                                             .|+.+.     .-.--..-+..|+.++|.+|++.||||++-.-++..+.+.++
T Consensus       464 ~~~~~~s~e~~~~~q~~ld~~y~~F~~~Va~~R~~~~~~v~~ia~Grv~tg~~A~~~GLVD~lG~~~~ai~~a~~~  539 (618)
T PRK10949        464 SITKALPPEFQQMMQLSIENGYKRFITLVADSRHKTPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVAKAAEL  539 (618)
T ss_pred             cccCCCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHhcCCcccHHHHHHcCCCccCCCHHHHHHHHHHH
Confidence                                   011110     111112224589999999999999999996544443333333

>PRK12319 acetyl-CoA carboxylase subunit alpha; Provisional

Probab=98.20  E-value=0.00014  Score=68.76  Aligned_cols=138  Identities=15%  Similarity=0.133  Sum_probs=94.0

Q ss_pred             CCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhHHHHHHHHHHHHHHHHhcCCeEEEE
Q 016290           33 LNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVAL  112 (392)
Q Consensus        33 lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IA~  112 (392)
                      .-+++++-.+.....++.+++. .+-+|-|.-+++++. |.+-.        .   ....+...++...+...+.|+|++
T Consensus        76 ~G~~~~~g~rKa~R~~~lA~~~-~lPvV~lvDtpGa~~-g~~aE--------~---~G~~~~ia~~~~~~s~~~VP~IsV  142 (256)
T PRK12319         76 FGQPHPEGYRKALRLMKQAEKF-GRPVVTFINTAGAYP-GVGAE--------E---RGQGEAIARNLMEMSDLKVPIIAI  142 (256)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHc-CCCEEEEEECCCcCC-CHhHH--------h---ccHHHHHHHHHHHHhCCCCCEEEE
Confidence            4678899999999999888765 566666644333332 32211        0   112233456777888999999999


Q ss_pred             ecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcch--HHHHHHhhcCCcccHHHHHHcCcccee
Q 016290          113 AHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG--HLGEFLALTGARLNGKELVAAGLATHF  190 (392)
Q Consensus       113 v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G--~~a~~L~ltG~~l~a~eA~~~GLv~~v  190 (392)
                      |-|.+.|||.-....||++++.+++.+++       .++-|++..|-+-..  ..+....    .+++.++.+.|+||.+
T Consensus       143 I~G~~~gGgA~a~~~~D~v~m~~~a~~~v-------~~pe~~a~il~~~~~~a~~aa~~~----~~~a~~l~~~g~iD~i  211 (256)
T PRK12319        143 IIGEGGSGGALALAVADQVWMLENTMYAV-------LSPEGFASILWKDGSRATEAAELM----KITAGELLEMGVVDKV  211 (256)
T ss_pred             EeCCcCcHHHHHhhcCCEEEEecCceEEE-------cCHHHHHHHHhcCcccHHHHHHHc----CCCHHHHHHCCCCcEe
Confidence            99999888887777999999999887664       333344444443221  2323322    7799999999999999


Q ss_pred             cCCC
Q 016290          191 VPSE  194 (392)
Q Consensus       191 v~~~  194 (392)
                      ||.-
T Consensus       212 i~e~  215 (256)
T PRK12319        212 IPEH  215 (256)
T ss_pred             cCCC
Confidence            9853

>PF00574 CLP_protease: Clp protease; InterPro: IPR001907 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.19  E-value=8.1e-06  Score=73.38  Aligned_cols=142  Identities=19%  Similarity=0.234  Sum_probs=94.1

Q ss_pred             EEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceE--EEEEcCCCccccCCCchhhccCCCCchhHHHHHHHHHHHHHH
Q 016290           24 LVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKL--VIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYWLCHH  101 (392)
Q Consensus        24 ~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~--Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~~~~~~~~~l~~~  101 (392)
                      +|.|+.|     ++.++...+.+.|..++..+..+-  |.|.      |.|||+..                 ...+...
T Consensus        18 ~i~l~g~-----I~~~~~~~~~~~L~~l~~~~~~~~i~i~IN------SpGG~v~~-----------------g~~i~~~   69 (182)
T PF00574_consen   18 IIFLNGP-----IDEESANRLISQLLYLENEDKNKPINIYIN------SPGGDVDA-----------------GLAIYDA   69 (182)
T ss_dssp             EEEEESS-----BSHHHHHHHHHHHHHHHHHTSSSEEEEEEE------ECEBCHHH-----------------HHHHHHH
T ss_pred             EEEECCc-----cCHHHHHHHHHHHHHHhccCCCceEEEEEc------CCCCccHH-----------------HHHHHHH
Confidence            4566655     789999999999988854333222  2233      45566532                 1346677


Q ss_pred             HHhcCCeEEEEecCceecccccccccCce--EEEeCCeeeeccccccCccCCchhHH----HHhhcc-----------h-
Q 016290          102 IHTYKKTQVALAHGITMGGGASLMVPLKF--SVVTEKTVFSTPEASIGFHTDCGFSF----IHSRLP-----------G-  163 (392)
Q Consensus       102 i~~~~kP~IA~v~G~a~GgG~~lal~~d~--riate~a~f~~PE~~iGl~P~~G~s~----~L~rl~-----------G-  163 (392)
                      |..++.|+++.+.|.|.+.|.-+.++|+.  |++.+++.|.+.+...+..-...-..    .+.+..           | 
T Consensus        70 i~~~~~~v~t~~~G~aaSaa~~i~~ag~~~~R~~~~~s~~m~H~p~~~~~g~~~~l~~~~~~l~~~~~~~~~~~~~~tg~  149 (182)
T PF00574_consen   70 IRSSKAPVTTVVLGLAASAATLIFLAGDKGKRYASPNSRFMIHQPSTGSGGNASELREQAKELEKLNERIANIYAERTGL  149 (182)
T ss_dssp             HHHSSSEEEEEEEEEEETHHHHHHHTSSTTTEEE-TT-EEEES-CEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred             HHhcCCCeEEEEeCccccceehhhhcCCcCceeeeecCEEEeecceeecccccchhHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            88899999999999999999999999999  99999999999888766533111111    111111           1 


Q ss_pred             --HHHHHHhhcCCcccHHHHHHcCccceecCC
Q 016290          164 --HLGEFLALTGARLNGKELVAAGLATHFVPS  193 (392)
Q Consensus       164 --~~a~~L~ltG~~l~a~eA~~~GLv~~vv~~  193 (392)
                        ..-..++-...-++++||++.||+|+++.+
T Consensus       150 ~~~~i~~~~~~~~~l~a~EA~~~GiiD~I~~~  181 (182)
T PF00574_consen  150 SKEEIEELMDRDTWLSAEEALEYGIIDEIIES  181 (182)
T ss_dssp             -HHHHHHHCSSTEEEEHHHHHHHTSSSEEESS
T ss_pred             cHHHHHHHHhCCccccHHHHHHcCCCCEeccC
Confidence              111222233455899999999999999864

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase family S14 (ClpP endopeptidase family, clan SK). ClpP is an ATP-dependent protease that cleaves a number of proteins, such as casein and albumin []. It exists as a heterodimer of ATP-binding regulatory A and catalytic P subunits, both of which are required for effective levels of protease activity in the presence of ATP [], although the P subunit alone does possess some catalytic activity. This family of sequences represent the P subunit. Proteases highly similar to ClpP have been found to be encoded in the genome of bacteria, metazoa, some viruses and in the chloroplast of plants. A number of the proteins in this family are classified as non-peptidase homologues as they have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for catalytic activity. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2ZL3_L 2ZL0_F 2ZL2_M 2ZL4_C 1TG6_D 2F6I_D 3V5I_b 3V5E_M 3QWD_D 2DEO_A ....

>PRK14512 ATP-dependent Clp protease proteolytic subunit; Provisional

Probab=98.14  E-value=2.6e-05  Score=71.07  Aligned_cols=146  Identities=18%  Similarity=0.182  Sum_probs=92.7

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhHHHHHHHHHHHHHH
Q 016290           22 VRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYWLCHH  101 (392)
Q Consensus        22 v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~~~~~~~~~l~~~  101 (392)
                      -++|.|..+     ++..+...+...|..++..+..+.|.|.=.    |-||++..-                 ..+...
T Consensus        23 ~r~I~i~g~-----I~~~~~~~i~~~L~~l~~~~~~~~I~l~IN----SpGG~v~ag-----------------~aI~d~   76 (197)
T PRK14512         23 SRSIVIAGE-----INKDLSELFQEKILLLEALDSKKPIFVYID----SEGGDIDAG-----------------FAIFNM   76 (197)
T ss_pred             CcEEEECCE-----EcHHHHHHHHHHHHHHHhcCCCCCEEEEEE----CCCCCHHHH-----------------HHHHHH
Confidence            345555543     778899999999988876333344444211    445554321                 245566


Q ss_pred             HHhcCCeEEEEecCceecccccccccCce--EEEeCCeeeeccccccCccCCch----hHHHHhhcc-----------h-
Q 016290          102 IHTYKKTQVALAHGITMGGGASLMVPLKF--SVVTEKTVFSTPEASIGFHTDCG----FSFIHSRLP-----------G-  163 (392)
Q Consensus       102 i~~~~kP~IA~v~G~a~GgG~~lal~~d~--riate~a~f~~PE~~iGl~P~~G----~s~~L~rl~-----------G-  163 (392)
                      |...+.||++.++|.|.+.|.-++++||-  |++.+++.|.+-...-|+.....    .+-.+-+..           | 
T Consensus        77 i~~~~~~V~t~v~G~AaSaaslIl~ag~~~~R~~~p~s~imiHqP~~~~~G~a~di~~~a~~l~~~~~~i~~~~a~~tg~  156 (197)
T PRK14512         77 IRFVKPKVFTIGVGLVASAAALIFLAAKKESRFSLPNARYLLHQPLSGFKGVATDIEIYANELNKVKSELNDIIAKETGQ  156 (197)
T ss_pred             HHhCCCCEEEEEEeeeHhHHHHHHhcCCcCceeECCCCcEEEEcCccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence            77789999999999999999999999985  89998888866544333211110    000111111           1 


Q ss_pred             --HHHHHHhhcCCcccHHHHHHcCccceecCC
Q 016290          164 --HLGEFLALTGARLNGKELVAAGLATHFVPS  193 (392)
Q Consensus       164 --~~a~~L~ltG~~l~a~eA~~~GLv~~vv~~  193 (392)
                        .....++-....++++||++.||+|+++++
T Consensus       157 ~~~~i~~~~~~d~~lta~EA~~yGliD~I~~~  188 (197)
T PRK14512        157 ELDKVEKDTDRDFWLDSSSAVKYGLVFEVVET  188 (197)
T ss_pred             CHHHHHHhhhcCcccCHHHHHHcCCccEeecC
Confidence              122233333456999999999999999975

>CHL00028 clpP ATP-dependent Clp protease proteolytic subunit

Probab=98.09  E-value=3.5e-05  Score=70.32  Aligned_cols=145  Identities=12%  Similarity=0.074  Sum_probs=97.0

Q ss_pred             EEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhHHHHHHHHHHHHHHH
Q 016290           23 RLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYWLCHHI  102 (392)
Q Consensus        23 ~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~~~~~~~~~l~~~i  102 (392)
                      ++|-|+-|     ++.++..++...|-.++.++..+-|.|.=.    |-|||+..                 ...+...|
T Consensus        31 Riifl~~~-----i~~~~a~~ii~~ll~L~~~~~~~~I~l~IN----SpGG~v~~-----------------g~aIyd~m   84 (200)
T CHL00028         31 RLLFLGQE-----VDDEIANQLIGLMVYLSIEDDTKDLYLFIN----SPGGSVIS-----------------GLAIYDTM   84 (200)
T ss_pred             CEEEECCe-----ecHHHHHHHHHHHHHHhccCCCCCEEEEEe----CCCcchhh-----------------HHHHHHHH
Confidence            45666655     899999999999999875443343333211    44454321                 13456667


Q ss_pred             HhcCCeEEEEecCceecccccccccCc--eEEEeCCeeeeccccccCccCCchhHH------HHhhcc-----------h
Q 016290          103 HTYKKTQVALAHGITMGGGASLMVPLK--FSVVTEKTVFSTPEASIGFHTDCGFSF------IHSRLP-----------G  163 (392)
Q Consensus       103 ~~~~kP~IA~v~G~a~GgG~~lal~~d--~riate~a~f~~PE~~iGl~P~~G~s~------~L~rl~-----------G  163 (392)
                      ...+.||...+.|.|.+.|.-|.++++  .|++.++++|.+.....|+.-+- ++-      .|-++.           |
T Consensus        85 ~~~~~~V~Tv~~G~AaS~aslIl~aG~kg~R~~~p~s~imiHqp~~~~~~G~-a~di~~~a~~l~~~~~~~~~~ya~~Tg  163 (200)
T CHL00028         85 QFVKPDVHTICLGLAASMASFILAGGEITKRLAFPHARVMIHQPASSFYEGQ-ASEFVLEAEELLKLRETITRVYAQRTG  163 (200)
T ss_pred             HhcCCCEEEEEEEehHHHHHHHHhCCCCCCEEecCCCeEEEecCccCcCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence            888999999999999999999999998  69999999988877665532111 111      111111           1


Q ss_pred             ---HHHHHHhhcCCcccHHHHHHcCccceecCCC
Q 016290          164 ---HLGEFLALTGARLNGKELVAAGLATHFVPSE  194 (392)
Q Consensus       164 ---~~a~~L~ltG~~l~a~eA~~~GLv~~vv~~~  194 (392)
                         ..-..+.-....++|+||++.||+|+++.+.
T Consensus       164 ~~~e~i~~~~~r~~~lta~EA~eyGliD~I~~~~  197 (200)
T CHL00028        164 KPLWVISEDMERDVFMSATEAKAYGIVDLVAVNN  197 (200)
T ss_pred             cCHHHHHHHhhcCccCCHHHHHHcCCCcEEeecC
Confidence               1222333344559999999999999998754

>CHL00198 accA acetyl-CoA carboxylase carboxyltransferase alpha subunit; Provisional

Probab=98.09  E-value=0.0003  Score=68.27  Aligned_cols=140  Identities=11%  Similarity=0.067  Sum_probs=93.1

Q ss_pred             CCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhHHHHHHHHHHHHHHHHhcCCeEEE
Q 016290           32 QLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVA  111 (392)
Q Consensus        32 ~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IA  111 (392)
                      ..-+++++-.+.....++.+++- .+-+|-|--++++++ |.+-.+           ........+..+.+.....|+|+
T Consensus       131 ~~G~~~p~g~rKa~Rlm~lA~~f-~lPIItlvDTpGA~~-G~~AE~-----------~G~~~aiar~l~~~a~~~VP~Is  197 (322)
T CHL00198        131 NFGMPSPGGYRKALRLMKHANKF-GLPILTFIDTPGAWA-GVKAEK-----------LGQGEAIAVNLREMFSFEVPIIC  197 (322)
T ss_pred             cCCCCCHHHHHHHHHHHHHHHHc-CCCEEEEEeCCCcCc-CHHHHH-----------HhHHHHHHHHHHHHHcCCCCEEE
Confidence            34678899999999999988775 556665543333443 211100           11223344566777889999999


Q ss_pred             EecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcchHHHHHHhhcCCcccHHHHHHcCccceec
Q 016290          112 LAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHLGEFLALTGARLNGKELVAAGLATHFV  191 (392)
Q Consensus       112 ~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G~~a~~L~ltG~~l~a~eA~~~GLv~~vv  191 (392)
                      +|-|.+-|||.-....||++++.+++.++.      +-|. |++..|-|-.. .+.. +-..-++++.|.++.|+||+++
T Consensus       198 VViGeggsGGAlal~~aD~V~m~e~a~~sV------isPE-g~a~Il~~d~~-~a~~-aA~~~~ita~dL~~~giiD~ii  268 (322)
T CHL00198        198 TIIGEGGSGGALGIGIGDSIMMLEYAVYTV------ATPE-ACAAILWKDSK-KSLD-AAEALKITSEDLKVLGIIDEII  268 (322)
T ss_pred             EEeCcccHHHHHhhhcCCeEEEeCCeEEEe------cCHH-HHHHHHhcchh-hHHH-HHHHcCCCHHHHHhCCCCeEec
Confidence            999999888765455699999999987764      2344 44444544322 2222 2334588999999999999999


Q ss_pred             CC
Q 016290          192 PS  193 (392)
Q Consensus       192 ~~  193 (392)
                      |.
T Consensus       269 ~E  270 (322)
T CHL00198        269 PE  270 (322)
T ss_pred             cC
Confidence            84

>TIGR00493 clpP ATP-dependent Clp protease, proteolytic subunit ClpP

Probab=98.05  E-value=6.6e-05  Score=68.17  Aligned_cols=146  Identities=16%  Similarity=0.099  Sum_probs=94.3

Q ss_pred             CEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhHHHHHHHHHHHHH
Q 016290           21 NVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYWLCH  100 (392)
Q Consensus        21 ~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~~~~~~~~~l~~  100 (392)
                      .-++|.|+-|     ++..+..++...|..++.++..+-|.|.=.    |-|||+..                 ...+..
T Consensus        25 ~~riI~l~g~-----I~~~~~~~ii~~L~~l~~~~~~~~i~l~In----SpGG~v~~-----------------g~~I~d   78 (191)
T TIGR00493        25 KERIIFLSGE-----VNDSVANLIVAQLLFLEAEDPEKDIYLYIN----SPGGSITA-----------------GLAIYD   78 (191)
T ss_pred             cCeEEEEccE-----EChHHHHHHHHHHHHhhccCCCCCEEEEEE----CCCCCHHH-----------------HHHHHH
Confidence            3456666654     778888999999988887654444444211    44555421                 123445


Q ss_pred             HHHhcCCeEEEEecCceecccccccccCc--eEEEeCCeeeeccccccCccCCchhH----HHHhhcc-----------h
Q 016290          101 HIHTYKKTQVALAHGITMGGGASLMVPLK--FSVVTEKTVFSTPEASIGFHTDCGFS----FIHSRLP-----------G  163 (392)
Q Consensus       101 ~i~~~~kP~IA~v~G~a~GgG~~lal~~d--~riate~a~f~~PE~~iGl~P~~G~s----~~L~rl~-----------G  163 (392)
                      .|..++.|+...+.|.|.+.|.-++++++  .|++.+++.|.+.+..-|......-.    -.+.++.           |
T Consensus        79 ~l~~~~~~v~t~~~G~AaSaaslI~~aG~~~~r~~~p~s~imiH~p~~~~~G~a~d~~~~a~~l~~~~~~~~~~ya~~tg  158 (191)
T TIGR00493        79 TMQFIKPDVSTICIGQAASMGAFLLSAGAKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQANEILRLKGLLNDILANHTG  158 (191)
T ss_pred             HHHhcCCCEEEEEEEeeccHHHHHHhcCCCCcEEecCCceEEEecCcccccCCcchhHHHHHHHHHHHHHHHHHHHHHHC
Confidence            56667778888889999999988888765  69999999998866543332111111    1112221           2


Q ss_pred             ---HHHHHHhhcCCcccHHHHHHcCccceecC
Q 016290          164 ---HLGEFLALTGARLNGKELVAAGLATHFVP  192 (392)
Q Consensus       164 ---~~a~~L~ltG~~l~a~eA~~~GLv~~vv~  192 (392)
                         .....++-.+..++|+||++.||+|+++.
T Consensus       159 ~~~~~i~~~~~~~~~lta~EA~~~GliD~ii~  190 (191)
T TIGR00493       159 QSLEQIEKDTERDFFMSAEEAKEYGLIDSVLT  190 (191)
T ss_pred             cCHHHHHHHhhCCccCcHHHHHHcCCccEEec
Confidence               22333444566799999999999999974

This model for the proteolytic subunit ClpP has been rebuilt to a higher stringency. In every bacterial genome with the ClpXP machine, a ClpP protein will be found that scores with this model. In general, this ClpP member will be encoded adjacent to the clpX gene, as were all examples used in the seed alignment. A large fraction of genomes have one or more additional ClpP paralogs, sometimes encoded nearby and sometimes elsewhere. The stringency of the trusted cutoff used here excludes the more divergent ClpP paralogs from being called authentic ClpP by this model.

>TIGR00513 accA acetyl-CoA carboxylase, carboxyl transferase, alpha subunit

Probab=98.05  E-value=0.0005  Score=66.70  Aligned_cols=136  Identities=12%  Similarity=0.073  Sum_probs=91.8

Q ss_pred             CCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhHHHHHHHHHHHHHHHHhcCCeEEEE
Q 016290           33 LNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVAL  112 (392)
Q Consensus        33 lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IA~  112 (392)
                      .-+++++-.+.....++.+++- .+-+|-|.-++++++ |.+..+           ....+...++.+.+.....|+|++
T Consensus       129 ~G~~~p~g~rKa~R~m~lA~~f-~iPvVtlvDTpGa~~-g~~aE~-----------~G~~~aia~~l~a~s~~~VP~IsV  195 (316)
T TIGR00513       129 FGMPAPEGYRKALRLMKMAERF-KMPIITFIDTPGAYP-GIGAEE-----------RGQSEAIARNLREMARLGVPVICT  195 (316)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHc-CCCEEEEEECCCCCC-CHHHHH-----------HHHHHHHHHHHHHHHcCCCCEEEE
Confidence            4678899999999988888764 566666644333333 221111           112233456777788999999999


Q ss_pred             ecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcch---HHHHHHhhcCCcccHHHHHHcCccce
Q 016290          113 AHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG---HLGEFLALTGARLNGKELVAAGLATH  189 (392)
Q Consensus       113 v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G---~~a~~L~ltG~~l~a~eA~~~GLv~~  189 (392)
                      |-|.+.|||.-....||++++.+++.++       +.++-|++..|-|-..   ..+.+     ..+++.++.+.|+||.
T Consensus       196 ViGeggsGGAla~~~aD~v~m~~~a~~s-------VisPEg~a~Il~kd~~~a~~aae~-----~~~ta~~l~~~G~iD~  263 (316)
T TIGR00513       196 VIGEGGSGGALAIGVGDKVNMLEYSTYS-------VISPEGCAAILWKDASKAPKAAEA-----MKITAPDLKELGLIDS  263 (316)
T ss_pred             EecccccHHHhhhccCCEEEEecCceEE-------ecCHHHHHHHhccchhhHHHHHHH-----ccCCHHHHHHCCCCeE
Confidence            9999977776544469999999887665       4444455555544322   23343     4567999999999999


Q ss_pred             ecCC
Q 016290          190 FVPS  193 (392)
Q Consensus       190 vv~~  193 (392)
                      +||.
T Consensus       264 II~e  267 (316)
T TIGR00513       264 IIPE  267 (316)
T ss_pred             eccC
Confidence            9984

The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the alpha chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.

>PLN03230 acetyl-coenzyme A carboxylase carboxyl transferase; Provisional

Probab=97.97  E-value=0.00098  Score=66.47  Aligned_cols=136  Identities=15%  Similarity=0.120  Sum_probs=89.9

Q ss_pred             CCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhHHHHHHHHHHHHHHHHhcCCeEEEEe
Q 016290           34 NVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALA  113 (392)
Q Consensus        34 Nal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IA~v  113 (392)
                      -+++++-.+.....++.+++. .+-+|-|.-+.+++ .|.+..+           ........++.+.+.....|+|++|
T Consensus       200 G~~~peGyRKAlR~mklAekf-~lPIVtLVDTpGA~-pG~~AEe-----------~Gqa~aIAr~l~ams~l~VPiISVV  266 (431)
T PLN03230        200 AMPQPNGYRKALRFMRHAEKF-GFPILTFVDTPGAY-AGIKAEE-----------LGQGEAIAFNLREMFGLRVPIIATV  266 (431)
T ss_pred             CCCCHHHHHHHHHHHHHHHHc-CCCEEEEEeCCCcC-CCHHHHH-----------HhHHHHHHHHHHHHhcCCCCEEEEE
Confidence            568899999999999988875 55666554333333 2221111           1122334567778899999999999


Q ss_pred             cCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcch--HHHHHHhhcCCcccHHHHHHcCccceec
Q 016290          114 HGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG--HLGEFLALTGARLNGKELVAAGLATHFV  191 (392)
Q Consensus       114 ~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G--~~a~~L~ltG~~l~a~eA~~~GLv~~vv  191 (392)
                      -|.+-|||.-....||++++.+++.+++      +-|.+ ++..|-+-..  ..+..    .-.+++.++++.|+||.||
T Consensus       267 iGeGgSGGAlalg~aD~VlMle~A~ysV------isPEg-aAsILwkd~~~A~eAAe----alkitA~dL~~~GiID~II  335 (431)
T PLN03230        267 IGEGGSGGALAIGCGNRMLMMENAVYYV------ASPEA-CAAILWKSAAAAPKAAE----ALRITAAELVKLGVVDEIV  335 (431)
T ss_pred             eCCCCcHHHHHhhcCCEEEEecCCEEEe------cCHHH-HHHHHhccccchHHHHH----HcCCCHHHHHhCCCCeEec
Confidence            9999556544444689999999876553      23444 4444443222  23333    3389999999999999999


Q ss_pred             CC
Q 016290          192 PS  193 (392)
Q Consensus       192 ~~  193 (392)
                      |.
T Consensus       336 ~E  337 (431)
T PLN03230        336 PE  337 (431)
T ss_pred             cC
Confidence            84

>PRK05724 acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated

Probab=97.96  E-value=0.00066  Score=65.98  Aligned_cols=139  Identities=12%  Similarity=0.062  Sum_probs=93.5

Q ss_pred             CCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhHHHHHHHHHHHHHHHHhcCCeEEEE
Q 016290           33 LNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVAL  112 (392)
Q Consensus        33 lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IA~  112 (392)
                      .-+++++-.+.....++.+++- ++-+|-|.-+.++++ |.+-.+           ....+...++.+.+.....|+|++
T Consensus       129 ~G~~~peg~rKa~R~m~lA~~f-~lPIVtlvDTpGa~~-G~~aE~-----------~G~~~aia~~l~~~a~~~VP~IsV  195 (319)
T PRK05724        129 FGMPRPEGYRKALRLMKMAEKF-GLPIITFIDTPGAYP-GIGAEE-----------RGQSEAIARNLREMARLKVPIICT  195 (319)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHc-CCCEEEEEeCCCCCC-CHHHHh-----------ccHHHHHHHHHHHHhCCCCCEEEE
Confidence            4568899999999988888764 566666654333333 321110           112334456778889999999999


Q ss_pred             ecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcchHHHHHHhhcCCcccHHHHHHcCccceecC
Q 016290          113 AHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHLGEFLALTGARLNGKELVAAGLATHFVP  192 (392)
Q Consensus       113 v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G~~a~~L~ltG~~l~a~eA~~~GLv~~vv~  192 (392)
                      |-|.+.|||.-....||++++.+++.++       +.++-|++..|-+-.. .+... -....+++.++.+.|+||.|+|
T Consensus       196 IiGeg~sGGAla~~~aD~v~m~~~A~~s-------visPEg~a~Il~~~~~-~a~~a-ae~~~ita~~l~~~g~iD~II~  266 (319)
T PRK05724        196 VIGEGGSGGALAIGVGDRVLMLEYSTYS-------VISPEGCASILWKDAS-KAPEA-AEAMKITAQDLKELGIIDEIIP  266 (319)
T ss_pred             EeCCccHHHHHHHhccCeeeeecCceEe-------ecCHHHHHHHHhcCch-hHHHH-HHHcCCCHHHHHHCCCceEecc
Confidence            9999977776444459998888877654       4555555556655432 12221 1145689999999999999998


Q ss_pred             C
Q 016290          193 S  193 (392)
Q Consensus       193 ~  193 (392)
                      .
T Consensus       267 E  267 (319)
T PRK05724        267 E  267 (319)
T ss_pred             C
Confidence            4

>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional

Probab=97.92  E-value=0.00088  Score=70.86  Aligned_cols=139  Identities=14%  Similarity=0.064  Sum_probs=92.9

Q ss_pred             CCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhHHHHHHHHHHHHHHHHhcCCeEEEE
Q 016290           33 LNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVAL  112 (392)
Q Consensus        33 lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IA~  112 (392)
                      .-+++++-.+.....++.+++- .+-+|-|-=++++++ |.+...           ........+..+.+.....|+|++
T Consensus       220 fG~~~peGyRKAlRlmkLAekf-gLPIVtLVDTpGA~p-G~~AEe-----------~Gq~~aIArnl~amasl~VP~ISV  286 (762)
T PLN03229        220 FGMPTPHGYRKALRMMYYADHH-GFPIVTFIDTPGAYA-DLKSEE-----------LGQGEAIAHNLRTMFGLKVPIVSI  286 (762)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHc-CCCEEEEEECCCcCC-CchhHH-----------HhHHHHHHHHHHHHhCCCCCEEEE
Confidence            4577888899999988888765 456565543323333 221111           112233456777888999999999


Q ss_pred             ecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcchHHHHHHhhcCCcccHHHHHHcCccceecC
Q 016290          113 AHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHLGEFLALTGARLNGKELVAAGLATHFVP  192 (392)
Q Consensus       113 v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G~~a~~L~ltG~~l~a~eA~~~GLv~~vv~  192 (392)
                      |-|.|.|||.-....||++++.+++.++       +.++-|++..|.|-.. .+.. +-..-+|++.|.++.|+||.+||
T Consensus       287 ViGeggSGGAlA~g~aD~VlMle~A~~s-------VisPEgaAsILwkd~~-~A~e-AAe~lkiTa~dL~~lGiiD~IIp  357 (762)
T PLN03229        287 VIGEGGSGGALAIGCANKLLMLENAVFY-------VASPEACAAILWKSAK-AAPK-AAEKLRITAQELCRLQIADGIIP  357 (762)
T ss_pred             EeCCcchHHHHHhhcCCEEEEecCCeEE-------ecCHHHHHHHHhcCcc-cHHH-HHHHcCCCHHHHHhCCCCeeecc
Confidence            9999988887666679999999887654       3433444445544322 1111 23445889999999999999998


Q ss_pred             C
Q 016290          193 S  193 (392)
Q Consensus       193 ~  193 (392)
                      .
T Consensus       358 E  358 (762)
T PLN03229        358 E  358 (762)
T ss_pred             C
Confidence            4

>PRK14514 ATP-dependent Clp protease proteolytic subunit; Provisional

Probab=97.79  E-value=0.00028  Score=65.24  Aligned_cols=135  Identities=10%  Similarity=0.048  Sum_probs=86.5

Q ss_pred             CCCHHHHHHHHHHHHHHhhCC---CceEEEEEcCCCccccCCCchhhccCCCCchhHHHHHHHHHHHHHHHHhcCCeEEE
Q 016290           35 VISSKVVSLLAEYLEKWEKDD---QAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVA  111 (392)
Q Consensus        35 al~~~m~~~L~~~l~~~~~d~---~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IA  111 (392)
                      .++..+...+...|..++..+   .+.+ .|-+      -||++..-                 ..+...|...+-||..
T Consensus        62 ~Idd~~a~~i~aqLl~L~~~~~~~~I~l-yINS------pGGsv~aG-----------------laIyd~m~~~~~~V~t  117 (221)
T PRK14514         62 QIDDYTANTIQAQLLYLDSVDPGKDISI-YINS------PGGSVYAG-----------------LGIYDTMQFISSDVAT  117 (221)
T ss_pred             EEcHHHHHHHHHHHHHHhccCCCCCEEE-EEEC------CCcchhhH-----------------HHHHHHHHhcCCCEEE
Confidence            378888888888877776432   3332 2333      34443211                 2345567777889999


Q ss_pred             EecCceecccccccccCce--EEEeCCeeeeccccccCccCCchh----HHHHhhc-----------ch---HHHHHHhh
Q 016290          112 LAHGITMGGGASLMVPLKF--SVVTEKTVFSTPEASIGFHTDCGF----SFIHSRL-----------PG---HLGEFLAL  171 (392)
Q Consensus       112 ~v~G~a~GgG~~lal~~d~--riate~a~f~~PE~~iGl~P~~G~----s~~L~rl-----------~G---~~a~~L~l  171 (392)
                      .+.|.|.+.|.-|.++||.  |++.+++.|.+....-|......-    .--+-++           -|   ..-...+-
T Consensus       118 v~~G~AAS~AslIl~aG~~gkR~~~pna~iMiHqP~~~~~G~a~di~i~a~el~~~~~~i~~iya~~TG~~~e~I~~~~~  197 (221)
T PRK14514        118 ICTGMAASMASVLLVAGTKGKRSALPHSRVMIHQPLGGAQGQASDIEITAREIQKLKKELYTIIADHSGTPFDKVWADSD  197 (221)
T ss_pred             EEEEEehhHHHHHHhcCCCCceeeCCCCEEEeccCCcccCCCcchHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhh
Confidence            9999999999999999985  889888888876665443211110    0111111           12   12223333


Q ss_pred             cCCcccHHHHHHcCccceecCC
Q 016290          172 TGARLNGKELVAAGLATHFVPS  193 (392)
Q Consensus       172 tG~~l~a~eA~~~GLv~~vv~~  193 (392)
                      ....++|+||++.||+|+|+.+
T Consensus       198 rd~wmtA~EA~eyGliD~Vi~~  219 (221)
T PRK14514        198 RDYWMTAQEAKEYGMIDEVLIK  219 (221)
T ss_pred             cCccCCHHHHHHcCCccEEeec
Confidence            4556999999999999999864

>PRK14513 ATP-dependent Clp protease proteolytic subunit; Provisional

Probab=97.74  E-value=0.00036  Score=63.66  Aligned_cols=136  Identities=15%  Similarity=0.184  Sum_probs=91.2

Q ss_pred             CCCHHHHHHHHHHHHHHhhCCCce--EEEEEcCCCccccCCCchhhccCCCCchhHHHHHHHHHHHHHHHHhcCCeEEEE
Q 016290           35 VISSKVVSLLAEYLEKWEKDDQAK--LVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVAL  112 (392)
Q Consensus        35 al~~~m~~~L~~~l~~~~~d~~v~--~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IA~  112 (392)
                      .++.++...+...|..++..+.-+  .|.|-      |.|||+.+-                 ..+...|...+-||...
T Consensus        35 ~i~~~~a~~ii~~Ll~L~~~~~~~~I~l~IN------SpGG~v~~G-----------------laIyd~m~~~~~~V~Ti   91 (201)
T PRK14513         35 PIESQMANTIVAQLLLLDSQNPEQEIQMYIN------CPGGEVYAG-----------------LAIYDTMRYIKAPVSTI   91 (201)
T ss_pred             EEcHHHHHHHHHHHHHhhccCCCCCEEEEEE------CCCCchhhH-----------------HHHHHHHHhcCCCEEEE
Confidence            488999999998888887643222  22333      445554321                 34566677888899999


Q ss_pred             ecCceecccccccccCce--EEEeCCeeeeccccccCccCCchhHHHHh------hcch-HHHHHHhhcC----------
Q 016290          113 AHGITMGGGASLMVPLKF--SVVTEKTVFSTPEASIGFHTDCGFSFIHS------RLPG-HLGEFLALTG----------  173 (392)
Q Consensus       113 v~G~a~GgG~~lal~~d~--riate~a~f~~PE~~iGl~P~~G~s~~L~------rl~G-~~a~~L~ltG----------  173 (392)
                      +.|.|.+.|.-|+++||-  |++.+++++.+....-|+.  +-++-+.-      +.-. -...|.--||          
T Consensus        92 ~~G~AaS~As~il~aG~kgkR~~~pna~iMIHqp~~~~~--G~a~di~~~a~el~~~~~~l~~iya~~Tg~~~~~I~~~~  169 (201)
T PRK14513         92 CVGIAMSMGSVLLMAGDKGKRMALPNSRIMIHQGSAGFR--GNTPDLEVQAKEVLFLRDTLVDIYHRHTDLPHEKLLRDM  169 (201)
T ss_pred             EEeeehhhHHHHHhcCCCCcEEecCCeEEEEecCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHh
Confidence            999999999999999985  9999999998877765541  11111111      1101 1122222344          


Q ss_pred             ---CcccHHHHHHcCccceecCCCC
Q 016290          174 ---ARLNGKELVAAGLATHFVPSEK  195 (392)
Q Consensus       174 ---~~l~a~eA~~~GLv~~vv~~~~  195 (392)
                         ..++|+||++.||+|+|+++..
T Consensus       170 ~rd~~msa~EA~eyGliD~I~~~~~  194 (201)
T PRK14513        170 ERDYFMSPEEAKAYGLIDSVIEPTR  194 (201)
T ss_pred             ccCcccCHHHHHHcCCCcEEeccCC
Confidence               4599999999999999997654

>PRK12551 ATP-dependent Clp protease proteolytic subunit; Reviewed

Probab=97.65  E-value=0.00053  Score=62.41  Aligned_cols=138  Identities=14%  Similarity=0.027  Sum_probs=88.8

Q ss_pred             CCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhHHHHHHHHHHHHHHHHhcCCeEEEEecC
Q 016290           36 ISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALAHG  115 (392)
Q Consensus        36 l~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IA~v~G  115 (392)
                      ++.++..++...|..++.++..+-|.|.=.    |-|||+..-                 ..++..|..++-||...+.|
T Consensus        34 i~~~~a~~ii~~Ll~l~~~~~~~~I~l~IN----SpGG~v~~g-----------------~aIyd~m~~~~~~V~t~~~G   92 (196)
T PRK12551         34 VTSDSANRIVAQLLFLEAEDPEKDIYLYIN----SPGGSVYDG-----------------LGIFDTMQHVKPDVHTVCVG   92 (196)
T ss_pred             ecHHHHHHHHHHHHHhhccCCCCCEEEEEe----CCCcchhhH-----------------HHHHHHHHhcCCCEEEEEEE
Confidence            899999999999998885443333333211    444554321                 23556667788899999999


Q ss_pred             ceecccccccccCce--EEEeCCeeeeccccccCccCCchhH----HHHhhc-----------ch---HHHHHHhhcCCc
Q 016290          116 ITMGGGASLMVPLKF--SVVTEKTVFSTPEASIGFHTDCGFS----FIHSRL-----------PG---HLGEFLALTGAR  175 (392)
Q Consensus       116 ~a~GgG~~lal~~d~--riate~a~f~~PE~~iGl~P~~G~s----~~L~rl-----------~G---~~a~~L~ltG~~  175 (392)
                      .|.+.|.-|+++++-  |++.+++++.+....-|..-...-.    -.|-+.           -|   ..-..++-....
T Consensus        93 ~AaS~AslIl~aG~~~~R~~~p~a~iMIHqP~~~~~G~a~di~~~a~~l~~~~~~~~~~ya~~tG~~~~~i~~~~~rd~~  172 (196)
T PRK12551         93 LAASMGAFLLCAGAKGKRSSLQHSRIMIHQPLGGARGQASDIRIQADEILFLKERLNTELSERTGQPLERIQEDTDRDFF  172 (196)
T ss_pred             EehhHHHHHHhCCCCCceecCCCCEEEEecCCcccCCCcchHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhcCcC
Confidence            999999999999884  8888888888766543321111000    011111           11   112223333455


Q ss_pred             ccHHHHHHcCccceecCCC
Q 016290          176 LNGKELVAAGLATHFVPSE  194 (392)
Q Consensus       176 l~a~eA~~~GLv~~vv~~~  194 (392)
                      ++|+||++.||+|+++...
T Consensus       173 msa~EA~eyGliD~I~~~~  191 (196)
T PRK12551        173 MSPSEAVEYGLIDLVIDKR  191 (196)
T ss_pred             CCHHHHHHcCCCcEEeccC
Confidence            9999999999999999764

>TIGR03133 malonate_beta malonate decarboxylase, beta subunit

Probab=97.59  E-value=0.0014  Score=62.43  Aligned_cols=150  Identities=14%  Similarity=0.083  Sum_probs=89.5

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhC----CCceEEEEEcCCCccccCCCchhhccCCCCchhHHHHHHHHHH
Q 016290           22 VRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKD----DQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYW   97 (392)
Q Consensus        22 v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d----~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~~~~~~~~~   97 (392)
                      |.++-.+..-..-+++......+..+++.+.+|    ..+.+|.|.-+|     |+-+.+-      ...+..+ .+.+.
T Consensus        61 v~v~a~D~t~~GGS~G~~~g~Ki~r~~e~A~~~~~~~~~~PvV~l~dSg-----GaRlqEg------~~~L~~~-a~i~~  128 (274)
T TIGR03133        61 VVVAAQEGRFQGGSVGEVHGAKIVGALRLAIEDNRKGQPTAVVLLLDTG-----GVRLQEA------NAGLIAI-AEIMR  128 (274)
T ss_pred             EEEEEECCCccCcCCCHHHHHHHHHHHHHHHhhhhccCCCCEEEEEcCC-----CcChhhh------HHHHHHH-HHHHH
Confidence            444444444455678888889999999888762    223466665433     3333211      0111111 11122


Q ss_pred             HHHHHHhcCCeEEEEecCc--eecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcch-H--HHHHHhhc
Q 016290           98 LCHHIHTYKKTQVALAHGI--TMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-H--LGEFLALT  172 (392)
Q Consensus        98 l~~~i~~~~kP~IA~v~G~--a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G-~--~a~~L~lt  172 (392)
                      .+..+... .|+|+++-|.  |.||+..++..||++|+++++.+++.           |....-...| .  -...-.|.
T Consensus       129 ~~~~ls~~-vP~Isvv~Gp~gc~GG~a~~a~l~D~vim~~~a~i~~a-----------GP~VIe~~~G~e~~~~~d~~l~  196 (274)
T TIGR03133       129 AILDARAA-VPVIGVIGGRVGCFGGMGIAAGLCSYLIMTEEGRLGLS-----------GPEVIEQEAGVEEFDSRDRALV  196 (274)
T ss_pred             HHHHHhCC-CCEEEEEeCCCCcchHHHHHHhcCCEEEEeCCcEEecc-----------CHHHHHHhcCCCccCHHHhccc
Confidence            22333344 8999999999  89999999999999999998776651           1111111112 0  12233344


Q ss_pred             CCcccHHHHHHcCccceecCCCC
Q 016290          173 GARLNGKELVAAGLATHFVPSEK  195 (392)
Q Consensus       173 G~~l~a~eA~~~GLv~~vv~~~~  195 (392)
                      -+.+.++.....|++|.+++++.
T Consensus       197 ~~~lGG~~~~~sG~~D~~v~dd~  219 (274)
T TIGR03133       197 WRTTGGKHRFLSGDADVLVEDDV  219 (274)
T ss_pred             ccccchHhHhhcccceEEeCCHH
Confidence            45577777888999999998753

Members of this protein family are the beta subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase.

>PRK11778 putative inner membrane peptidase; Provisional

Probab=97.53  E-value=0.00068  Score=66.34  Aligned_cols=155  Identities=9%  Similarity=0.039  Sum_probs=92.3

Q ss_pred             eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhHHHHHHHHHHH
Q 016290           19 IGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYWL   98 (392)
Q Consensus        19 ~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~~~~~~~~~l   98 (392)
                      .+.|++|.++.+=..+ -...+.+++...+.....+   ..|||+-.    |.||.+...           ...   ...
T Consensus        89 ~~~v~VI~~~G~I~~~-~~~~l~e~i~a~l~~A~~~---~aVvLrid----SpGG~v~~s-----------~~a---~~~  146 (330)
T PRK11778         89 KPRLFVLDFKGDIDAS-EVESLREEITAILAVAKPG---DEVLLRLE----SPGGVVHGY-----------GLA---ASQ  146 (330)
T ss_pred             CCeEEEEEEEEEECCC-cchhhHHHHHHHHHhccCC---CeEEEEEe----CCCCchhHH-----------HHH---HHH
Confidence            4678888887542211 1123445555555555433   46777644    444443321           000   111


Q ss_pred             HHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhH-----------------------
Q 016290           99 CHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFS-----------------------  155 (392)
Q Consensus        99 ~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s-----------------------  155 (392)
                      ...+....||+|+.+++.|.-||.-++++||.++|.+.+.++.--+-.. .|.....                       
T Consensus       147 l~~lr~~~kpVva~v~~~AASggY~iAsaAD~I~A~P~a~vGSIGVi~~-~~~~~~lLeKlGI~~evi~aG~yK~a~~pf  225 (330)
T PRK11778        147 LQRLRDAGIPLTVAVDKVAASGGYMMACVADKIIAAPFAIVGSIGVVAQ-IPNFHRLLKKHDIDVELHTAGEYKRTLTLF  225 (330)
T ss_pred             HHHHHhcCCCEEEEECCchhhHHHHHHHhCCEEEECCCCeEEeeeeeee-ccCHHHHHHHCCCceEEEEecCccCCCCCC
Confidence            3345667899999999999999999999999999999887665332111 1221110                       


Q ss_pred             --------HHHhhcc---------------hHHHHHHhhcCCcccHHHHHHcCccceecCCCCh
Q 016290          156 --------FIHSRLP---------------GHLGEFLALTGARLNGKELVAAGLATHFVPSEKL  196 (392)
Q Consensus       156 --------~~L~rl~---------------G~~a~~L~ltG~~l~a~eA~~~GLv~~vv~~~~l  196 (392)
                              -.+...+               +..-..-+.+|+.++|++|++.||||++-..+++
T Consensus       226 ~~~see~Re~~q~~Ld~~y~~F~~~Va~~R~~l~~~~va~G~v~~g~~Al~~GLVD~Ig~~dd~  289 (330)
T PRK11778        226 GENTEEGREKFREELEETHQLFKDFVQRYRPQLDIDKVATGEHWYGQQALELGLVDEIQTSDDY  289 (330)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHhCCCcCHHHHHHCCCCCcCCCHHHH
Confidence                    0011000               1111223458999999999999999999866554

>COG0616 SppA Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

Probab=97.52  E-value=0.00072  Score=66.22  Aligned_cols=82  Identities=17%  Similarity=0.164  Sum_probs=60.7

Q ss_pred             HHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhHHHHHHHHHHHHHHHHhcCCeEEEEecCceecc
Q 016290           41 VSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGG  120 (392)
Q Consensus        41 ~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~Gg  120 (392)
                      .+.+.+.|+.+..|+.++.|+|.=.    |-||.+..-              ...++....+..-+ ||++.|++.|+-|
T Consensus        82 ~~~~~~~l~~~~~~~~vk~vvL~in----SPGG~v~as--------------~~i~~~l~~l~~~~-PV~v~v~~~AASG  142 (317)
T COG0616          82 GDDIEEILRAARADPSVKAVVLRIN----SPGGSVVAS--------------ELIARALKRLRAKK-PVVVSVGGYAASG  142 (317)
T ss_pred             HHHHHHHHHHHhcCCCCceEEEEEE----CcCCchhHH--------------HHHHHHHHHHhhcC-CEEEEECCeecch
Confidence            5566777888889999999999633    445443211              12234444455544 9999999999999


Q ss_pred             cccccccCceEEEeCCeeeec
Q 016290          121 GASLMVPLKFSVVTEKTVFST  141 (392)
Q Consensus       121 G~~lal~~d~riate~a~f~~  141 (392)
                      |.-++++||.+||+++|..+=
T Consensus       143 GY~IA~aAd~I~a~p~si~GS  163 (317)
T COG0616         143 GYYIALAADKIVADPSSITGS  163 (317)
T ss_pred             hhhhhccCCEEEecCCceeee
Confidence            999999999999999987653

>PRK05654 acetyl-CoA carboxylase subunit beta; Validated

Probab=97.39  E-value=0.0035  Score=60.56  Aligned_cols=156  Identities=15%  Similarity=0.125  Sum_probs=96.6

Q ss_pred             EeCCEEEEEEcCCC-CCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhHHHHHHHHH
Q 016290           18 EIGNVRLVTLNRPR-QLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMY   96 (392)
Q Consensus        18 ~~~~v~~itLnrp~-~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~~~~~~~~   96 (392)
                      .+|.-..|.-|.+. ..-+++....+.+..+++.+.+. .+-+|.|.-+|+     +-+.   ++.   ..+.. ..+..
T Consensus       118 I~G~~V~v~a~D~~f~gGS~g~~~~eKi~r~~e~A~~~-~lPlV~l~dsgG-----armq---Egi---~sL~~-~ak~~  184 (292)
T PRK05654        118 IEGMPVVLAVMDFSFMGGSMGSVVGEKIVRAVERAIEE-KCPLVIFSASGG-----ARMQ---EGL---LSLMQ-MAKTS  184 (292)
T ss_pred             ECCEEEEEEEEecccccCCccHHHHHHHHHHHHHHHHc-CCCEEEEEcCCC-----cchh---hhh---hHHHh-HHHHH
Confidence            45544445555554 56789999999999999988775 578888876553     2221   110   00111 11222


Q ss_pred             HHHHHHHhcCCeEEEEecCceecccc-cccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcch-HHHHHHhhcCC
Q 016290           97 WLCHHIHTYKKTQVALAHGITMGGGA-SLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HLGEFLALTGA  174 (392)
Q Consensus        97 ~l~~~i~~~~kP~IA~v~G~a~GgG~-~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G-~~a~~L~ltG~  174 (392)
                      ..+..+.....|+|+++-|.|.||+. ..++.+|++||.+++.+++--.               |.+- ..+..+  .-+
T Consensus       185 ~a~~~~~~a~vP~IsVv~gpt~GG~aas~a~~~D~iia~p~A~ig~aGp---------------rvie~~~~e~l--pe~  247 (292)
T PRK05654        185 AALKRLSEAGLPYISVLTDPTTGGVSASFAMLGDIIIAEPKALIGFAGP---------------RVIEQTVREKL--PEG  247 (292)
T ss_pred             HHHHHHHcCCCCEEEEEeCCCchHHHHHHHHcCCEEEEecCcEEEecCH---------------HHHHhhhhhhh--hhh
Confidence            33444566679999999999999965 4577899999988876665221               1111 111111  111


Q ss_pred             cccHHHHHHcCccceecCCCChHHHHHHH
Q 016290          175 RLNGKELVAAGLATHFVPSEKLPELEKRL  203 (392)
Q Consensus       175 ~l~a~eA~~~GLv~~vv~~~~l~~~~~~l  203 (392)
                      .-+++-+.+.|+||.+|++.++.....++
T Consensus       248 ~~~ae~~~~~G~vD~Vv~~~e~r~~l~~~  276 (292)
T PRK05654        248 FQRAEFLLEHGAIDMIVHRRELRDTLASL  276 (292)
T ss_pred             hcCHHHHHhCCCCcEEECHHHHHHHHHHH
Confidence            12455567889999999998887654444

>TIGR03134 malonate_gamma malonate decarboxylase, gamma subunit

Probab=97.38  E-value=0.009  Score=56.00  Aligned_cols=156  Identities=15%  Similarity=0.082  Sum_probs=94.9

Q ss_pred             eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHH-hhCCCceEEEEEcCCCccccCCCchhhccCCCCchhHHHHHHHHHH
Q 016290           19 IGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKW-EKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYW   97 (392)
Q Consensus        19 ~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~-~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~~~~~~~~~   97 (392)
                      +|....|.=|+|..  .++.+-...+...+... +.+.++-+|.|.=... |-.|..           .......+..-+
T Consensus        30 ~G~~V~vIa~~~~~--~~g~~~~~k~A~~v~~~~d~~f~~PIv~lvDtpG-~~~g~~-----------aE~~G~~~a~A~   95 (238)
T TIGR03134        30 AGGKVTVIGVVPDA--EVGLDEALALAQAVLDVIEADDKRPIVVLVDTPS-QAYGRR-----------EELLGINQALAH   95 (238)
T ss_pred             CCEEEEEEEECCCC--cCChHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC-CCCCHH-----------HHHHHHHHHHHH
Confidence            44444455566653  78888899999999885 5557777776643221 111111           111222233344


Q ss_pred             HHHHHH---hcCCeEEEEecCceecccc-cccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcchHHHHHHhhc-
Q 016290           98 LCHHIH---TYKKTQVALAHGITMGGGA-SLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHLGEFLALT-  172 (392)
Q Consensus        98 l~~~i~---~~~kP~IA~v~G~a~GgG~-~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G~~a~~L~lt-  172 (392)
                      +.+.+.   ..+.|+|++|-|.++|||+ .+.+.+|.++|.       |...++..+.-|++..+-|-.. ....+.-+ 
T Consensus        96 l~~a~a~a~~~~vP~IsvI~g~a~ggg~lamg~~ad~v~Al-------p~A~i~vm~~e~aa~I~~~~~~-~~~e~a~~~  167 (238)
T TIGR03134        96 LAKALALARLAGHPVIGLIYGKAISGAFLAHGLQADRIIAL-------PGAMVHVMDLESMARVTKRSVE-ELEALAKSS  167 (238)
T ss_pred             HHHHHHHhhcCCCCEEEEEeCCccHHHHHHHccCcCeEEEc-------CCcEEEecCHHHHHHHHccCHh-HHHHHHHhh
Confidence            555555   4459999999999998875 444446665555       5556667766666666665443 22222211 


Q ss_pred             -CCcccHHHHHHcCccceecCCCCh
Q 016290          173 -GARLNGKELVAAGLATHFVPSEKL  196 (392)
Q Consensus       173 -G~~l~a~eA~~~GLv~~vv~~~~l  196 (392)
                       -...+...+.+.|++|.++++.+-
T Consensus       168 ~~~a~~~~~~~~~G~vd~vi~~~~~  192 (238)
T TIGR03134       168 PVFAPGIENFVKLGGVHALLDVADA  192 (238)
T ss_pred             hhhccCHHHHHhCCCccEEeCCCCc
Confidence             124566789999999999997664

Members of this protein family are the gamma subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.

>PRK07189 malonate decarboxylase subunit beta; Reviewed

Probab=97.27  E-value=0.0037  Score=60.37  Aligned_cols=150  Identities=16%  Similarity=0.135  Sum_probs=87.8

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCC----CceEEEEEcCCCccccCCCchhhccCCCCchhHHHHHHHHHH
Q 016290           22 VRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDD----QAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYW   97 (392)
Q Consensus        22 v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~----~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~~~~~~~~~   97 (392)
                      |.++-.+..=..-+++..-...+..+++.+.++.    -+.+|+|.-+|     |+-+.+   .   ...+..+ .+.+.
T Consensus        70 v~v~a~D~tf~GGS~G~~~g~Ki~r~~e~A~~~~~~~~~~PvV~l~dSG-----GaRlqE---g---~~~L~~~-a~i~~  137 (301)
T PRK07189         70 VVVAAQEGRFMGGSVGEVHGAKLAGALELAAEDNRNGIPTAVLLLFETG-----GVRLQE---A---NAGLAAI-AEIMR  137 (301)
T ss_pred             EEEEEECCCccCcCcCHHHHHHHHHHHHHHHHhCCCCCCCCEEEEecCC-----CcCccc---h---HHHHHHH-HHHHH
Confidence            4444455444567888999999999999887764    25677775543     232221   0   1111111 11122


Q ss_pred             HHHHHHhcCCeEEEEecCc--eecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcch---HHHHHHhhc
Q 016290           98 LCHHIHTYKKTQVALAHGI--TMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG---HLGEFLALT  172 (392)
Q Consensus        98 l~~~i~~~~kP~IA~v~G~--a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G---~~a~~L~lt  172 (392)
                      .+..+... .|+|+++-|.  |+||+.-++..||++|+++++.+++.-           ....-...|   --...-.+.
T Consensus       138 ~~~~ls~~-VP~I~vv~G~~gc~GG~a~~a~l~D~iIm~~~a~iglaG-----------P~VIe~~~G~e~~d~~d~~~v  205 (301)
T PRK07189        138 AIVDLRAA-VPVIGLIGGRVGCFGGMGIAAALCSYLIVSEEGRLGLSG-----------PEVIEQEAGVEEFDSRDRALV  205 (301)
T ss_pred             HHHHHhCC-CCEEEEEcCCCCCcHHHHHHHhcCCEEEEECCcEEeccC-----------HHHHHHhcCCcccCHHHhccc
Confidence            22333444 9999999999  999999999999999999987766521           111111111   011222222


Q ss_pred             CCcccHHHHHHcCccceecCCCC
Q 016290          173 GARLNGKELVAAGLATHFVPSEK  195 (392)
Q Consensus       173 G~~l~a~eA~~~GLv~~vv~~~~  195 (392)
                      .+.+.+......|.+|.+++++.
T Consensus       206 w~~lGG~h~~~sG~~D~~v~dd~  228 (301)
T PRK07189        206 WRTTGGKHRYLSGLADALVDDDV  228 (301)
T ss_pred             ccccCcceeeecccceEEeCCHH
Confidence            22233344556899999997654

>TIGR00515 accD acetyl-CoA carboxylase, carboxyl transferase, beta subunit

Probab=97.25  E-value=0.008  Score=57.84  Aligned_cols=157  Identities=14%  Similarity=0.097  Sum_probs=96.1

Q ss_pred             EeCCEEEEEEcCCC-CCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhHHHHHHHHH
Q 016290           18 EIGNVRLVTLNRPR-QLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMY   96 (392)
Q Consensus        18 ~~~~v~~itLnrp~-~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~~~~~~~~   96 (392)
                      .+|.-..|.-|.+. ..-+++....+.+..+++.+.+. .+-+|.+..+|++     -   +.++.   ..+..+ .+..
T Consensus       117 I~G~~V~v~a~D~~f~gGSmg~~~geKi~r~~e~A~~~-~lPlV~l~dSgGa-----R---mqEg~---~sL~~~-ak~~  183 (285)
T TIGR00515       117 LYGMPIVVAVFDFAFMGGSMGSVVGEKFVRAIEKALED-NCPLIIFSASGGA-----R---MQEAL---LSLMQM-AKTS  183 (285)
T ss_pred             ECCEEEEEEEEeccccCCCccHHHHHHHHHHHHHHHHc-CCCEEEEEcCCCc-----c---cccch---hHHHhH-HHHH
Confidence            45543344444443 55789999999999999988764 6788888765543     1   11111   111111 1222


Q ss_pred             HHHHHHHhcCCeEEEEecCceeccccc-ccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcchHHHHHHhhcCCc
Q 016290           97 WLCHHIHTYKKTQVALAHGITMGGGAS-LMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHLGEFLALTGAR  175 (392)
Q Consensus        97 ~l~~~i~~~~kP~IA~v~G~a~GgG~~-lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G~~a~~L~ltG~~  175 (392)
                      ..+..+.....|+|+++-|+|.||+.. .++.+|++|+.+++.+++--.+           .+....|   ..  +.-..
T Consensus       184 ~~~~~~~~~~vP~IsVv~gpt~GG~aas~a~~~D~iia~p~A~ig~aGpr-----------Vie~ti~---e~--lpe~~  247 (285)
T TIGR00515       184 AALAKMSERGLPYISVLTDPTTGGVSASFAMLGDLNIAEPKALIGFAGPR-----------VIEQTVR---EK--LPEGF  247 (285)
T ss_pred             HHHHHHHcCCCCEEEEEeCCcchHHHHHHHhCCCEEEEECCeEEEcCCHH-----------HHHHHhc---Cc--cchhc
Confidence            234455666899999999999999654 5679999999999877662221           1111111   11  11111


Q ss_pred             ccHHHHHHcCccceecCCCChHHHHHHH
Q 016290          176 LNGKELVAAGLATHFVPSEKLPELEKRL  203 (392)
Q Consensus       176 l~a~eA~~~GLv~~vv~~~~l~~~~~~l  203 (392)
                      -+++=+.+.|+||.+|++.++.....++
T Consensus       248 q~ae~~~~~G~vD~iv~~~~~r~~l~~~  275 (285)
T TIGR00515       248 QTSEFLLEHGAIDMIVHRPEMKKTLASL  275 (285)
T ss_pred             CCHHHHHhCCCCcEEECcHHHHHHHHHH
Confidence            2344467889999999999887654444

The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the beta chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.

>COG0740 ClpP Protease subunit of ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

Probab=97.17  E-value=0.00098  Score=60.36  Aligned_cols=143  Identities=15%  Similarity=0.134  Sum_probs=85.4

Q ss_pred             EEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEE--EcCCCccccCCCchhhccCCCCchhHHHHHHHHHHHHHHH
Q 016290           25 VTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIV--KGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYWLCHHI  102 (392)
Q Consensus        25 itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl--~g~G~~FcaG~Dl~~l~~~~~~~~~~~~~~~~~~~l~~~i  102 (392)
                      |.|..|     ++..+-..+...|..++..+..+-|.|  -+.|      ||+.+-                 ..++..|
T Consensus        30 I~l~g~-----I~~~~a~~i~aqll~Lea~~~~k~I~lyINSpG------G~V~aG-----------------~AIydtm   81 (200)
T COG0740          30 IFLGGE-----IEDHMANLIVAQLLFLEAEDPDKDIYLYINSPG------GSVTAG-----------------LAIYDTM   81 (200)
T ss_pred             EEEeee-----echHHHHHHHHHHHHHHhcCCCCCeEEEEeCCC------cccchh-----------------HHHHHHH
Confidence            666655     555567777777766666544443333  3444      443321                 2345567


Q ss_pred             HhcCCeEEEEecCceecccccccccCceE--EEeCCeeeeccccccCccCCchhHHHH-hhc---------------ch-
Q 016290          103 HTYKKTQVALAHGITMGGGASLMVPLKFS--VVTEKTVFSTPEASIGFHTDCGFSFIH-SRL---------------PG-  163 (392)
Q Consensus       103 ~~~~kP~IA~v~G~a~GgG~~lal~~d~r--iate~a~f~~PE~~iGl~P~~G~s~~L-~rl---------------~G-  163 (392)
                      ...++||...+.|.|..-|.-|+++++..  ++.+++++-..-.. |.+-+...=... ++.               -| 
T Consensus        82 ~~ik~~V~ti~~G~AaSmgs~l~~aG~~g~r~~lPnsrimIHqP~-gg~~G~a~Di~i~A~ei~~~~~~l~~i~a~~TGq  160 (200)
T COG0740          82 QFIKPPVSTICMGQAASMGSVLLMAGDKGKRFALPNARIMIHQPS-GGAQGQASDIEIHAREILKIKERLNRIYAEHTGQ  160 (200)
T ss_pred             HhcCCCeEEEEecHHHhHHHHHHhcCCCCCceeCCCceEEEecCC-ccCccCHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            78899999999999999999999998764  66666665554443 222211110000 111               01 


Q ss_pred             --HHHHHHhhcCCcccHHHHHHcCccceecCCCCh
Q 016290          164 --HLGEFLALTGARLNGKELVAAGLATHFVPSEKL  196 (392)
Q Consensus       164 --~~a~~L~ltG~~l~a~eA~~~GLv~~vv~~~~l  196 (392)
                        ..-....=....++|+||+++||+|+|+.+.+.
T Consensus       161 ~~e~i~~d~drd~~msa~eA~~yGLiD~V~~~~~~  195 (200)
T COG0740         161 TLEKIEKDTDRDTWMSAEEAKEYGLIDKVIESREA  195 (200)
T ss_pred             CHHHHHHhhcccccCCHHHHHHcCCcceecccccc
Confidence              011111123445999999999999999987553

>CHL00174 accD acetyl-CoA carboxylase beta subunit; Reviewed

Probab=97.10  E-value=0.015  Score=56.05  Aligned_cols=149  Identities=15%  Similarity=0.099  Sum_probs=88.4

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhHHHHHHHHHHHHHH
Q 016290           22 VRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYWLCHH  101 (392)
Q Consensus        22 v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~~~~~~~~~l~~~  101 (392)
                      |.++..+-.=..-+++....+.+..+++.+.+. .+-+|++..+|+     +-+.+   +.   ..+..+-+....+...
T Consensus       135 v~v~a~Dftf~gGSmG~v~geKi~ra~e~A~~~-rlPlV~l~~SGG-----ARmQE---g~---~sL~qmak~saa~~~~  202 (296)
T CHL00174        135 VALGVMDFQFMGGSMGSVVGEKITRLIEYATNE-SLPLIIVCASGG-----ARMQE---GS---LSLMQMAKISSALYDY  202 (296)
T ss_pred             EEEEEECCcccccCcCHHHHHHHHHHHHHHHHc-CCCEEEEECCCC-----ccccc---cc---hhhhhhHHHHHHHHHH
Confidence            333444433345688899999999999888765 477888876543     32221   11   0011111110011111


Q ss_pred             HHhcCCeEEEEecCceecccccc-cccCceEEEeCCeeeeccccccCccCCchhHHHHhhcchHHHHHHhhcCCc----c
Q 016290          102 IHTYKKTQVALAHGITMGGGASL-MVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHLGEFLALTGAR----L  176 (392)
Q Consensus       102 i~~~~kP~IA~v~G~a~GgG~~l-al~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G~~a~~L~ltG~~----l  176 (392)
                      ...-..|+|+++.|+|.||+... ++.||++|+.+++.+++.-.      .+     ...          .+|+.    +
T Consensus       203 ~~~~~vP~Isvl~gPt~GG~aas~a~l~Diiiae~~A~IgfAGP------rV-----Ie~----------t~ge~lpe~f  261 (296)
T CHL00174        203 QSNKKLFYISILTSPTTGGVTASFGMLGDIIIAEPNAYIAFAGK------RV-----IEQ----------TLNKTVPEGS  261 (296)
T ss_pred             HHcCCCCEEEEEcCCCchHHHHHHHHcccEEEEeCCeEEEeeCH------HH-----HHH----------hcCCcCCccc
Confidence            22456899999999999998765 66799999977776554221      00     000          11221    1


Q ss_pred             -cHHHHHHcCccceecCCCChHHHHHHH
Q 016290          177 -NGKELVAAGLATHFVPSEKLPELEKRL  203 (392)
Q Consensus       177 -~a~eA~~~GLv~~vv~~~~l~~~~~~l  203 (392)
                       +++-.++.|++|.+|+..+|.+...+|
T Consensus       262 q~ae~l~~~G~vD~iV~r~~lr~~l~~l  289 (296)
T CHL00174        262 QAAEYLFDKGLFDLIVPRNLLKGVLSEL  289 (296)
T ss_pred             ccHHHHHhCcCceEEEcHHHHHHHHHHH
Confidence             244466899999999988887655544

>PRK12552 ATP-dependent Clp protease-like protein; Reviewed

Probab=97.09  E-value=0.0069  Score=56.03  Aligned_cols=140  Identities=19%  Similarity=0.199  Sum_probs=90.1

Q ss_pred             CCCHHHHHHHHHHHHHHhhCCCce--EEEEEcCCCccccC---CCchhhccCCCCchhHHHHHHHHHHHHHHHHhcCCeE
Q 016290           35 VISSKVVSLLAEYLEKWEKDDQAK--LVIVKGVGRAFSAG---GDLKMFYDGRNSKDSCLEVVYRMYWLCHHIHTYKKTQ  109 (392)
Q Consensus        35 al~~~m~~~L~~~l~~~~~d~~v~--~Vvl~g~G~~FcaG---~Dl~~l~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~  109 (392)
                      .++.++...|...|-.++.++..+  -+-|-+.|....+|   |++.                 ....++..|...+-||
T Consensus        48 ~~~~~~a~~iiaqLl~L~~~~~~k~I~lyINSpGGsv~~G~~iG~v~-----------------~glaIyD~m~~ik~~V  110 (222)
T PRK12552         48 QVGMDVTELIIAQLLYLEFDDPEKPIYFYINSTGTSWYTGDAIGFET-----------------EAFAICDTMRYIKPPV  110 (222)
T ss_pred             chhHhHHHHHHHHHHHHhccCCCCCEEEEEeCCCCCccccccccccc-----------------cHHHHHHHHHhcCCCe
Confidence            345559999998888886543222  34445666444444   1111                 1133555667778889


Q ss_pred             EEEecCceecccccccccCce--EEEeCCeeeeccccccCccCCchhHHHH-------hhcchH-HHHHHhhcCC-----
Q 016290          110 VALAHGITMGGGASLMVPLKF--SVVTEKTVFSTPEASIGFHTDCGFSFIH-------SRLPGH-LGEFLALTGA-----  174 (392)
Q Consensus       110 IA~v~G~a~GgG~~lal~~d~--riate~a~f~~PE~~iGl~P~~G~s~~L-------~rl~G~-~a~~L~ltG~-----  174 (392)
                      ...+.|.|.+.+.-|.++++-  |.+.+++++.+.....|..   |.+.=+       -++--. ...|.--||+     
T Consensus       111 ~Tv~~G~AaS~AslIl~aG~kg~R~alpns~iMIHqP~~~~~---G~A~di~~~a~el~~~r~~l~~iya~~TG~~~e~I  187 (222)
T PRK12552        111 HTICIGQAMGTAAMILSAGTKGQRASLPHATIVLHQPRSGAR---GQATDIQIRAKEVLHNKRTMLEILSRNTGQTVEKL  187 (222)
T ss_pred             EEEEEeehhhHHHHHHhCCCCCceecCCCcEEEeccCCcccc---cCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
Confidence            999999999999999999985  9999999988877654432   222111       111111 1222233554     


Q ss_pred             --------cccHHHHHHcCccceecCCC
Q 016290          175 --------RLNGKELVAAGLATHFVPSE  194 (392)
Q Consensus       175 --------~l~a~eA~~~GLv~~vv~~~  194 (392)
                              .++|+||++.||+|+++.+.
T Consensus       188 ~~d~~rd~wmsA~EA~eyGliD~Ii~~~  215 (222)
T PRK12552        188 SKDTDRMFYLTPQEAKEYGLIDRVLESR  215 (222)
T ss_pred             HHHhcCCCcCCHHHHHHcCCCcEEeccC
Confidence                    49999999999999999653

>PF01972 SDH_sah: Serine dehydrogenase proteinase; InterPro: IPR002825 This family of archaebacterial proteins, formerly known as DUF114, has been found to be a serine dehydrogenase proteinase distantly related to ClpP proteinases that belong to the serine proteinase superfamily

Probab=97.00  E-value=0.0028  Score=59.82  Aligned_cols=94  Identities=14%  Similarity=0.184  Sum_probs=76.4

Q ss_pred             CCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhHHHHHHHHHHHHHHHHhcCCeEEEEe
Q 016290           34 NVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALA  113 (392)
Q Consensus        34 Nal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IA~v  113 (392)
                      +-++.+....+.++++...++..+-. +|.      +-||++..                 -.++...|..++.|++++|
T Consensus        70 ~~I~i~dse~v~raI~~~~~~~~IdL-ii~------TpGG~v~A-----------------A~~I~~~l~~~~~~v~v~V  125 (285)
T PF01972_consen   70 RYIDIDDSEFVLRAIREAPKDKPIDL-IIH------TPGGLVDA-----------------AEQIARALREHPAKVTVIV  125 (285)
T ss_pred             eeEcHhhHHHHHHHHHhcCCCCceEE-EEE------CCCCcHHH-----------------HHHHHHHHHhCCCCEEEEE
Confidence            56899999999999998887765533 343      33444332                 1456677888999999999


Q ss_pred             cCceecccccccccCceEEEeCCeeeeccccccCccCC
Q 016290          114 HGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTD  151 (392)
Q Consensus       114 ~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~  151 (392)
                      +..|+-||.-++++||-.++++.+.+|--+.++|-.|.
T Consensus       126 P~~A~SAGTlIALaADeIvM~p~a~LGpiDPqi~~~pA  163 (285)
T PF01972_consen  126 PHYAMSAGTLIALAADEIVMGPGAVLGPIDPQIGQYPA  163 (285)
T ss_pred             CcccccHHHHHHHhCCeEEECCCCccCCCCccccCCCh
Confidence            99999999999999999999999999999999988773

The family belong to MEROPS peptidase family S49; they are mostly unassigned peptidases but include the archaean signal peptide peptidase 1 []. The family has a catalytic triad of Ser, Asp, His residues, which shows an altered residue ordering compared with the ClpP proteinases but similar to that of the carboxypeptidase clan []. ; GO: 0016021 integral to membrane

>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type

Probab=96.99  E-value=0.0077  Score=63.85  Aligned_cols=85  Identities=8%  Similarity=-0.039  Sum_probs=63.1

Q ss_pred             HHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhHHHHHHHHHHHHHHHHhcCCeEEEEecCcee
Q 016290           39 KVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITM  118 (392)
Q Consensus        39 ~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~  118 (392)
                      -.+.++.++|+.+.+|+.|++|||.-.+   +.|+.+..+              ...++....+....|||||..++.+ 
T Consensus        76 ~~l~~i~~~i~~A~~D~~IkgIvL~i~~---~~g~~~~~~--------------~ei~~ai~~fk~sgKpVvA~~~~~~-  137 (584)
T TIGR00705        76 ISLFDIVNAIRQAADDRRIEGLVFDLSN---FSGWDSPHL--------------VEIGSALSEFKDSGKPVYAYGTNYS-  137 (584)
T ss_pred             cCHHHHHHHHHHHhcCCCceEEEEEccC---CCCCCHHHH--------------HHHHHHHHHHHhcCCeEEEEEcccc-
Confidence            3567999999999999999999998653   123333221              2223444455667899999999876 


Q ss_pred             cccccccccCceEEEeCCeeeec
Q 016290          119 GGGASLMVPLKFSVVTEKTVFST  141 (392)
Q Consensus       119 GgG~~lal~~d~riate~a~f~~  141 (392)
                      -||.-|+.+||-+++.+.+.+++
T Consensus       138 s~~YylAs~AD~I~~~p~G~v~~  160 (584)
T TIGR00705       138 QGQYYLASFADEIILNPMGSVDL  160 (584)
T ss_pred             chhhhhhhhCCEEEECCCceEEe
Confidence            57889999999999999877654

E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.

>PF01343 Peptidase_S49: Peptidase family S49 peptidase classification

Probab=96.90  E-value=0.00088  Score=58.59  Aligned_cols=97  Identities=15%  Similarity=0.095  Sum_probs=59.7

Q ss_pred             HHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccc------------cCc---------cCCch-------
Q 016290          102 IHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEAS------------IGF---------HTDCG-------  153 (392)
Q Consensus       102 i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~------------iGl---------~P~~G-------  153 (392)
                      .....|||||.++|.+..||.-|+.+||-+++.+.+.++..-+.            +|+         +-+.+       
T Consensus         2 ~~~~~KpV~a~~~~~~~S~~Y~lAs~ad~I~~~p~s~vgsiGv~~~~~~~~~~l~k~GV~~~~~~~g~~K~~~~~~~~~s   81 (154)
T PF01343_consen    2 FKASGKPVVAYAEGYAASGAYYLASAADEIYANPSSSVGSIGVSAERLFFKGLLEKLGVKVEVVRSGEYKSAGFPRDPMS   81 (154)
T ss_dssp             HHHTT--EEEEEEEEEETHHHHHHTTSSEEEE-TT-EEE---EEEEEEE-HHHHHHTT-EEEEEESSTTCCCCCTTSS--
T ss_pred             ccccCCeEEEEECCcchhHHHHHHHcCCEEEecCCCEEEEeChhhccccHHHHHHHCCCeEEEEecCccccccCcCCCCC
Confidence            35679999999999999999999999999999998877662221            221         12221       


Q ss_pred             --hHHHHhhcc---------------h--HHHHHHhhcCCcccHHHHHHcCccceecCCCChHH
Q 016290          154 --FSFIHSRLP---------------G--HLGEFLALTGARLNGKELVAAGLATHFVPSEKLPE  198 (392)
Q Consensus       154 --~s~~L~rl~---------------G--~~a~~L~ltG~~l~a~eA~~~GLv~~vv~~~~l~~  198 (392)
                        .-..+.+++               |  .--..-++.|..++|++|++.||||.+-..+++..
T Consensus        82 ~~~r~~~~~~l~~~~~~f~~~Va~~R~~~~~~v~~~~~~~~~~~~~A~~~GLiD~i~~~~~~~~  145 (154)
T PF01343_consen   82 EEERENLQELLDELYDQFVNDVAEGRGLSPDDVEEIADGGVFTAQQALELGLIDEIGTFDEAIA  145 (154)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHCHHCCHEEEHHHHHHTTSSSEETSHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHhhccccHHHHHHcCchhhcCCHHHHHH
Confidence              111111111               1  01112246899999999999999999975554443

; InterPro: IPR002142 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S49 (protease IV family, clan S-). The predicted active site serine for members of this family occurs in a transmembrane domain. The domain defines sequences in viruses, archaea, bacteria and plants. These sequences are variously annotated in the different taxonomic groups, examples are: Viruses: capsid protein Archaea: proteinase IV homolog Bacteria: proteinase IV, sohB, SppA, pfaP, putative protease Plants: SppA, protease IV This group also contains proteins classified as non-peptidase homologues that either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity of peptidases. Related proteins, non-peptidase homologs and unclassified S49 members are also to be found in IPR002810 from INTERPRO.; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3RST_B 3BEZ_D 3BF0_A.

>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit

Probab=96.36  E-value=0.076  Score=55.43  Aligned_cols=161  Identities=12%  Similarity=0.055  Sum_probs=100.5

Q ss_pred             EeCCEEEEEEcCCC-CCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhHHHHHHHHH
Q 016290           18 EIGNVRLVTLNRPR-QLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMY   96 (392)
Q Consensus        18 ~~~~v~~itLnrp~-~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~~~~~~~~   96 (392)
                      .+|.-..|.-|+|. ..-+++.+-.+.+.++++.+.+ ..+-+|.|.-++. |..|-+           ......++..-
T Consensus       312 i~G~~V~vvAnd~~~~~G~~~~~~~~K~~r~i~~a~~-~~lPlV~lvDs~G-~~~g~~-----------~E~~g~~~~~a  378 (512)
T TIGR01117       312 INGQSVGIIANQPKVMAGCLDIDSSDKIARFIRFCDA-FNIPIVTFVDVPG-FLPGVN-----------QEYGGIIRHGA  378 (512)
T ss_pred             ECCEEEEEEEeccccccCCCCHHHHHHHHHHHHHHHH-cCCCEEEEEeCcC-ccccHH-----------HHHHHHHHHHH
Confidence            34443344445554 3346999999999999998876 4677777754433 444322           11133455556


Q ss_pred             HHHHHHHhcCCeEEEEecCceecccccccc-----cCceEEEeCCeeeeccccccCccCCchhHHHHhhcc------hHH
Q 016290           97 WLCHHIHTYKKTQVALAHGITMGGGASLMV-----PLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLP------GHL  165 (392)
Q Consensus        97 ~l~~~i~~~~kP~IA~v~G~a~GgG~~lal-----~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~------G~~  165 (392)
                      ++++.+.....|.|++|-|.+.|||. +++     .+|+++|.+++       .+|+.+.-|+...+-|.-      ...
T Consensus       379 ~~~~a~~~~~vP~isvi~g~~~Gga~-~am~~~~~~~d~~~a~p~a-------~~~v~~pe~a~~i~~~~~l~~~~~~~~  450 (512)
T TIGR01117       379 KVLYAYSEATVPKVTIITRKAYGGAY-LAMCSKHLGADQVYAWPTA-------EIAVMGPAGAANIIFRKDIKEAKDPAA  450 (512)
T ss_pred             HHHHHHHhCCCCEEEEEcCCCchHHH-HHhccccCCCCEEEEcCCC-------eEeecCHHHHHHHHhhhhcccccCHHH
Confidence            78888899999999999999988764 333     37776666665       555554444444443321      011


Q ss_pred             HHHHh---hcCCcccHHHHHHcCccceecCCCChHHH
Q 016290          166 GEFLA---LTGARLNGKELVAAGLATHFVPSEKLPEL  199 (392)
Q Consensus       166 a~~L~---ltG~~l~a~eA~~~GLv~~vv~~~~l~~~  199 (392)
                      ...-.   .--+..++..+.+.|++|.||++.+....
T Consensus       451 ~~~~~~~~~~~~~~~~~~~a~~g~vD~VI~P~~tR~~  487 (512)
T TIGR01117       451 TRKQKIAEYREEFANPYKAAARGYVDDVIEPKQTRPK  487 (512)
T ss_pred             HHHHHHHHHHHhhcCHHHHHhcCCCCeeEChHHHHHH
Confidence            11111   11224477889999999999999887653

This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.

>PRK10949 protease 4; Provisional

Probab=96.18  E-value=0.075  Score=56.68  Aligned_cols=85  Identities=11%  Similarity=0.022  Sum_probs=60.2

Q ss_pred             HHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhHHHHHHHHHHHHHHHHhcCCeEEEEecCcee
Q 016290           39 KVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITM  118 (392)
Q Consensus        39 ~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~  118 (392)
                      -.+.++.++|+++..|+.|++|||.-.+-   .|+.+..              ....++....+....||+||..+..+ 
T Consensus        95 ~~l~div~~i~~Aa~D~rIkgivL~i~s~---gG~~~a~--------------~~eI~~ai~~fk~sGKpVvA~~~~~~-  156 (618)
T PRK10949         95 NSLFDIVNTIRQAKDDRNITGIVLDLKNF---AGADQPS--------------MQYIGKALREFRDSGKPVYAVGDSYS-  156 (618)
T ss_pred             ccHHHHHHHHHHHhcCCCceEEEEEeCCC---CCccHHH--------------HHHHHHHHHHHHHhCCeEEEEecCcc-
Confidence            34568999999999999999999986531   1221111              12223444455667899999766665 


Q ss_pred             cccccccccCceEEEeCCeeeec
Q 016290          119 GGGASLMVPLKFSVVTEKTVFST  141 (392)
Q Consensus       119 GgG~~lal~~d~riate~a~f~~  141 (392)
                      -+|.-|+.+||-+++.+.+.+++
T Consensus       157 s~~YyLASaAD~I~l~P~G~v~~  179 (618)
T PRK10949        157 QGQYYLASFANKIYLSPQGVVDL  179 (618)
T ss_pred             chhhhhhhhCCEEEECCCceEEE
Confidence            46889999999999998877654

>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain

Probab=96.14  E-value=0.052  Score=57.22  Aligned_cols=152  Identities=16%  Similarity=0.147  Sum_probs=87.5

Q ss_pred             EeCCEEEEEEcCCC-CCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhHHHHHHHHH
Q 016290           18 EIGNVRLVTLNRPR-QLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMY   96 (392)
Q Consensus        18 ~~~~v~~itLnrp~-~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~~~~~~~~   96 (392)
                      .+|.-..|.-|.+. +.-+++....+.+..+++.+.+. .+-+|.|.-+|++     .+.+ .....   ....-+...+
T Consensus       126 V~Gr~V~v~a~D~tv~GGs~g~~~~~Ki~r~~elA~~~-~lPlV~l~DSgGa-----rl~~-q~e~~---~~~~~~g~if  195 (569)
T PLN02820        126 VHGRLCMFVANDPTVKGGTYYPITVKKHLRAQEIAAQC-RLPCIYLVDSGGA-----NLPR-QAEVF---PDRDHFGRIF  195 (569)
T ss_pred             ECCEEEEEEEECCCccCCCCCHHHHHHHHHHHHHHHHc-CCCEEEEEeCCCc-----CCcc-ccccc---chHhHHHHHH
Confidence            34433334444443 56789999999999999988775 5677777654433     2311 00000   0011111122


Q ss_pred             HHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCC-eeeeccccccCccCCchhHHHHhhcchHHHHHHhhcCCc
Q 016290           97 WLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEK-TVFSTPEASIGFHTDCGFSFIHSRLPGHLGEFLALTGAR  175 (392)
Q Consensus        97 ~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~-a~f~~PE~~iGl~P~~G~s~~L~rl~G~~a~~L~ltG~~  175 (392)
                      .....+.....|+|+++-|.|.|||.-....||++|+++. +.+.+           +|........|.   .  .|.+.
T Consensus       196 ~~~~~ls~~~VP~Isvv~G~~~gGgAy~~a~~D~vim~~~~a~i~~-----------aGP~vV~~~~Ge---~--v~~ee  259 (569)
T PLN02820        196 YNQARMSSAGIPQIALVLGSCTAGGAYVPAMADESVIVKGNGTIFL-----------AGPPLVKAATGE---E--VSAED  259 (569)
T ss_pred             HHHHHHhCCCCCEEEEEeCCCChHHHHHHHhCCceEEecCCcEEEe-----------cCHHHHHhhcCc---c--cCHHH
Confidence            2223355567899999999999999999999999999985 43333           121112111121   0  23333


Q ss_pred             ccHHHHH--HcCccceecCCCC
Q 016290          176 LNGKELV--AAGLATHFVPSEK  195 (392)
Q Consensus       176 l~a~eA~--~~GLv~~vv~~~~  195 (392)
                      +.+.+.+  ..|.++++++++.
T Consensus       260 LGGa~~h~~~sGv~d~~~~de~  281 (569)
T PLN02820        260 LGGADVHCKVSGVSDHFAQDEL  281 (569)
T ss_pred             hCCHHHhcccccccccccCchH
Confidence            4444444  3799988887654

>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]

Probab=95.99  E-value=0.052  Score=56.50  Aligned_cols=138  Identities=17%  Similarity=0.195  Sum_probs=90.1

Q ss_pred             EEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCC--CchhhccCCCCchhHHHHHHHHHHHHH
Q 016290           23 RLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGG--DLKMFYDGRNSKDSCLEVVYRMYWLCH  100 (392)
Q Consensus        23 ~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~--Dl~~l~~~~~~~~~~~~~~~~~~~l~~  100 (392)
                      .++..+.--..-+++..-...+..+++.+.++ .+.+|.|.-     |+|+  ++.+-..      .... +...+.-..
T Consensus        60 ~v~a~D~t~~gGs~g~~~~~Ki~ra~~~A~~~-~~P~v~l~d-----sgGa~~r~~eg~~------~l~~-~g~i~~~~~  126 (493)
T PF01039_consen   60 VVIAQDFTVLGGSVGEVHGEKIARAIELALEN-GLPLVYLVD-----SGGAFLRMQEGVE------SLMG-MGRIFRAIA  126 (493)
T ss_dssp             EEEEEETTSGGGTBSHHHHHHHHHHHHHHHHH-TEEEEEEEE-----ESSBCGGGGGHHH------HHHH-HHHHHHHHH
T ss_pred             EEEEeccceecCCCCcccceeeehHHHHHHHc-CCCcEEecc-----ccccccccchhhh------hhhh-hHHHHHHHH
Confidence            33334444456789999999999999988876 566777754     4455  3333221      1111 122233334


Q ss_pred             HHHhcCCeEEEEecCceecccccccccCceEEEeCC-eeeeccccccCccCCchhHHHHhhcchHHHHHHhhcCCcccHH
Q 016290          101 HIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEK-TVFSTPEASIGFHTDCGFSFIHSRLPGHLGEFLALTGARLNGK  179 (392)
Q Consensus       101 ~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~-a~f~~PE~~iGl~P~~G~s~~L~rl~G~~a~~L~ltG~~l~a~  179 (392)
                      .+.. ..|+|+++.|.|.|||.-++..||++|++++ +.+.+.           |...+.          ..||+.++.+
T Consensus       127 ~~~~-~iP~I~vv~G~~~Gg~A~~~~~~d~~i~~~~~a~i~l~-----------GP~vv~----------~~~Ge~~~~~  184 (493)
T PF01039_consen  127 RLSG-GIPQISVVTGPCTGGGAYLAALSDFVIMVKGTARIFLA-----------GPRVVE----------SATGEEVDSE  184 (493)
T ss_dssp             HHHT-TS-EEEEEESEEEGGGGHHHHHSSEEEEETTTCEEESS-----------THHHHH----------HHHSSCTSHH
T ss_pred             HHhc-CCCeEEEEccccccchhhcccccCccccCccceEEEec-----------cccccc----------cccCccccch
Confidence            4555 9999999999999999999999999999997 665431           111111          2456777766


Q ss_pred             HH-------HHcCccceecCCCC
Q 016290          180 EL-------VAAGLATHFVPSEK  195 (392)
Q Consensus       180 eA-------~~~GLv~~vv~~~~  195 (392)
                      +.       ...|.+|.++++++
T Consensus       185 ~lgG~~~h~~~sG~~d~v~~de~  207 (493)
T PF01039_consen  185 ELGGADVHAAKSGVVDYVVDDEE  207 (493)
T ss_dssp             HHHBHHHHHHTSSSSSEEESSHH
T ss_pred             hhhhhhhhcccCCCceEEEechH
Confidence            53       46899999998753

The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....

>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit

Probab=95.67  E-value=0.093  Score=54.79  Aligned_cols=147  Identities=14%  Similarity=0.135  Sum_probs=83.7

Q ss_pred             eCCEEEEEEcCCC-CCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhHHHHHHHHHH
Q 016290           19 IGNVRLVTLNRPR-QLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYW   97 (392)
Q Consensus        19 ~~~v~~itLnrp~-~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~~~~~~~~~   97 (392)
                      +|.-..|.-+... +.-+++....+.+..+++.+.++. +-+|.|.-+|     |+.+.+-....   ......+   +.
T Consensus        80 ~Gr~v~v~a~D~t~~gGS~g~~~~~K~~r~~e~A~~~~-lPlV~l~dSg-----Garm~eg~~~l---~~~~~~~---~~  147 (512)
T TIGR01117        80 DGRLVYAFAQDFTVMGGSLGEMHAAKIVKIMDLAMKMG-APVVGLNDSG-----GARIQEAVDAL---KGYGDIF---YR  147 (512)
T ss_pred             CCEEEEEEEECCcccccCCCHHHHHHHHHHHHHHHHcC-CCEEEEecCC-----CCCccccchhh---hhHHHHH---HH
Confidence            4433333334433 457888889999999998887764 5677775533     33332211000   0011111   11


Q ss_pred             HHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCe-eeeccccccCccCCchhHHHHhhcchHHHHHHhhcCCcc
Q 016290           98 LCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKT-VFSTPEASIGFHTDCGFSFIHSRLPGHLGEFLALTGARL  176 (392)
Q Consensus        98 l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a-~f~~PE~~iGl~P~~G~s~~L~rl~G~~a~~L~ltG~~l  176 (392)
                       ... ..-..|+|+++-|.|.||+.-....|||+|+++++ .+.+           +|...+....|   .  -++.+.+
T Consensus       148 -~~~-~s~~iP~Isvv~G~~~GG~a~~~al~D~vim~~~~a~i~~-----------aGP~vv~~~~G---e--~v~~e~l  209 (512)
T TIGR01117       148 -NTI-ASGVVPQISAIMGPCAGGAVYSPALTDFIYMVDNTSQMFI-----------TGPQVIKTVTG---E--EVTAEQL  209 (512)
T ss_pred             -HHH-HcCCCcEEEEEecCCCcHHHHHHHhcCceEEeccceEEEe-----------cChHHHHhhcC---c--ccchhhc
Confidence             111 23358999999999999998877899999999964 3333           12111222111   1  1134445


Q ss_pred             cHHHHH--HcCccceecCCCC
Q 016290          177 NGKELV--AAGLATHFVPSEK  195 (392)
Q Consensus       177 ~a~eA~--~~GLv~~vv~~~~  195 (392)
                      .+.+..  ..|.+|.+++++.
T Consensus       210 GGa~~h~~~sGv~d~~~~de~  230 (512)
T TIGR01117       210 GGAMAHNSVSGVAHFIAEDDD  230 (512)
T ss_pred             chHHHhccccceeEEecCChH
Confidence            555544  4899999887643

This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.

>COG0777 AccD Acetyl-CoA carboxylase beta subunit [Lipid metabolism]

Probab=95.51  E-value=0.052  Score=51.22  Aligned_cols=146  Identities=18%  Similarity=0.224  Sum_probs=90.1

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhHHHHHHHHHHHHHH
Q 016290           22 VRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYWLCHH  101 (392)
Q Consensus        22 v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~~~~~~~~~l~~~  101 (392)
                      ++...++-.=-.-+|..-.-+.|..+++.+-.+ .+.+|+++.+|++     -+.+   +   .-.+.+.. +.......
T Consensus       124 vv~av~df~FmgGSmGsVvGeki~ra~E~A~e~-k~P~v~f~aSGGA-----RMQE---g---~lSLMQMa-ktsaAl~~  190 (294)
T COG0777         124 VVLAVMDFAFMGGSMGSVVGEKITRAIERAIED-KLPLVLFSASGGA-----RMQE---G---ILSLMQMA-KTSAALKR  190 (294)
T ss_pred             EEEEEEeccccccchhHHHHHHHHHHHHHHHHh-CCCEEEEecCcch-----hHhH---H---HHHHHHHH-HHHHHHHH
Confidence            344444433234678888888999999888765 5789999887632     1111   0   00111111 12334556


Q ss_pred             HHhcCCeEEEEecCceecc-cccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcc-h-HHHHHHhhcCCcccH
Q 016290          102 IHTYKKTQVALAHGITMGG-GASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLP-G-HLGEFLALTGARLNG  178 (392)
Q Consensus       102 i~~~~kP~IA~v~G~a~Gg-G~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~-G-~~a~~L~ltG~~l~a  178 (392)
                      +..-..|+|+++..+++|| -+.+++.+|+.||-+++.+++.--+      +--.-.=-.++ | +.+.+          
T Consensus       191 l~ea~lpyIsVLt~PTtGGVsASfA~lGDi~iAEP~AlIGFAGpR------VIEQTire~LPegfQ~aEf----------  254 (294)
T COG0777         191 LSEAGLPYISVLTDPTTGGVSASFAMLGDIIIAEPGALIGFAGPR------VIEQTIREKLPEGFQTAEF----------  254 (294)
T ss_pred             HHhcCCceEEEecCCCccchhHhHHhccCeeecCcccccccCcch------hhhhhhcccCCcchhhHHH----------
Confidence            6778899999999999988 4679999999998877766553221      11100001111 2 34444          


Q ss_pred             HHHHHcCccceecCCCChHH
Q 016290          179 KELVAAGLATHFVPSEKLPE  198 (392)
Q Consensus       179 ~eA~~~GLv~~vv~~~~l~~  198 (392)
                        .++.|++|.||+..++..
T Consensus       255 --LlehG~iD~iv~R~elr~  272 (294)
T COG0777         255 --LLEHGMIDMIVHRDELRT  272 (294)
T ss_pred             --HHHcCCceeeecHHHHHH
Confidence              578999999999877654

>COG1030 NfeD Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]

Probab=95.11  E-value=0.35  Score=48.81  Aligned_cols=147  Identities=12%  Similarity=0.139  Sum_probs=103.4

Q ss_pred             eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhHHHHHHHHHHH
Q 016290           19 IGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYWL   98 (392)
Q Consensus        19 ~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~~~~~~~~~l   98 (392)
                      +..|.+|.++     +++++.+.+.+.+.++.++++. ..+|||.=.                 + ..   -+.....++
T Consensus        25 ~~~v~vi~i~-----g~I~~~s~~~l~r~l~~A~~~~-a~~vvl~ld-----------------T-PG---Gl~~sm~~i   77 (436)
T COG1030          25 EKKVYVIEID-----GAIDPASADYLQRALQSAEEEN-AAAVVLELD-----------------T-PG---GLLDSMRQI   77 (436)
T ss_pred             CCeEEEEEec-----CccCHHHHHHHHHHHHHHHhCC-CcEEEEEec-----------------C-CC---chHHHHHHH
Confidence            4467778886     4699999999999999998865 344555211                 0 00   112334678


Q ss_pred             HHHHHhcCCeEEEEec---CceecccccccccCceEEEeCCeeeeccccc-cC-ccCC-ch-hHHHHh------hcch--
Q 016290           99 CHHIHTYKKTQVALAH---GITMGGGASLMVPLKFSVVTEKTVFSTPEAS-IG-FHTD-CG-FSFIHS------RLPG--  163 (392)
Q Consensus        99 ~~~i~~~~kP~IA~v~---G~a~GgG~~lal~~d~riate~a~f~~PE~~-iG-l~P~-~G-~s~~L~------rl~G--  163 (392)
                      ...|.+.+.|++..+.   +.|.-.|.-++++||+..+.+.|.++--..- .| -.++ .. .++++.      +.-|  
T Consensus        78 v~~i~~s~vPV~~yv~p~ga~AaSAGtyI~m~~hiaaMAPgT~iGaa~Pi~~~g~~~~~~~~~n~~~ay~~~~A~~~gRN  157 (436)
T COG1030          78 VRAILNSPVPVIGYVVPDGARAASAGTYILMATHIAAMAPGTNIGAATPIAGGGTSAKEANTTNAAVAYIRSLAEERGRN  157 (436)
T ss_pred             HHHHHcCCCCEEEEEcCCCcchhchhhHHHHhcChhhhCCCCcccccceecCCCCCccchhhHHHHHHHHHHHHHHcCCC
Confidence            8899999999888775   3699999999999999999998887754432 22 1111 11 233333      2333  


Q ss_pred             -HHHHHHhhcCCcccHHHHHHcCccceecC
Q 016290          164 -HLGEFLALTGARLNGKELVAAGLATHFVP  192 (392)
Q Consensus       164 -~~a~~L~ltG~~l~a~eA~~~GLv~~vv~  192 (392)
                       ..+..++--...++++||++.|++|-+..
T Consensus       158 ~~~ae~~v~~~~~l~a~eA~~~~vid~iA~  187 (436)
T COG1030         158 PTWAERFVTENLSLTAEEALRQGVIDLIAR  187 (436)
T ss_pred             hHHHHHHhhhccCCChhHHHhcCccccccC
Confidence             46788888899999999999999987764

>COG0825 AccA Acetyl-CoA carboxylase alpha subunit [Lipid metabolism]

Probab=94.88  E-value=0.22  Score=47.46  Aligned_cols=88  Identities=14%  Similarity=0.157  Sum_probs=61.9

Q ss_pred             HHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcchHHHHHHhhcCCcc
Q 016290           97 WLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHLGEFLALTGARL  176 (392)
Q Consensus        97 ~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G~~a~~L~ltG~~l  176 (392)
                      +-...|.+++.|+||.|=|---+||+--...+|.+.+-|+++++.      +.|.+.++ .|-|=. .++... -..-.+
T Consensus       179 ~nL~em~~LkvPiI~iVIGEGgSGGALAi~vad~V~mle~s~ySV------isPEG~As-ILWkD~-~ka~eA-Ae~mki  249 (317)
T COG0825         179 RNLREMARLKVPIISIVIGEGGSGGALAIGVADRVLMLENSTYSV------ISPEGCAS-ILWKDA-SKAKEA-AEAMKI  249 (317)
T ss_pred             HHHHHHhCCCCCEEEEEecCCCchhhHHhhHHHHHHHHHhceeee------cChhhhhh-hhhcCh-hhhHHH-HHHcCC
Confidence            344567899999999999986555543334589999999999875      45555444 454432 222222 344578


Q ss_pred             cHHHHHHcCccceecCC
Q 016290          177 NGKELVAAGLATHFVPS  193 (392)
Q Consensus       177 ~a~eA~~~GLv~~vv~~  193 (392)
                      ++.+.+++||||.+||.
T Consensus       250 ta~dLk~lgiID~II~E  266 (317)
T COG0825         250 TAHDLKELGIIDGIIPE  266 (317)
T ss_pred             CHHHHHhCCCcceeccC
Confidence            99999999999999985

>PLN02157 3-hydroxyisobutyryl-CoA hydrolase-like protein

Probab=94.01  E-value=0.079  Score=53.59  Aligned_cols=64  Identities=17%  Similarity=0.192  Sum_probs=51.7

Q ss_pred             HHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHcCCccHHHHHHHHH---HhccCCCCCCCC
Q 016290          270 VLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGIRAL---TIEKDNAPKWDP  339 (392)
Q Consensus       270 ~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eGv~a~---l~dK~r~P~w~~  339 (392)
                      .++++...+|.++..+|+.++... .+....+..+......++.+   +|+.|++.+|   + +| |.|.|--
T Consensus       229 ~~~~i~~~~p~av~~~k~~~~~~~-~~~~~~l~~~~~~i~~~f~~---~d~~ei~~al~~~~-~k-r~~~wa~  295 (401)
T PLN02157        229 QLKKLLTDDPSVVESCLEKCAEVA-HPEKTGVIRRIDLLEKCFSH---DTVEEIIDSLEIEA-GR-RKDTWCI  295 (401)
T ss_pred             HHHHHHcCCHHHHHHHHHHHhccc-CCcchhHHHHHHHHHHHhcC---CCHHHHHHHHHhhh-cc-cchHHHH
Confidence            366777889999999999998663 35667788888888899998   9999999999   5 45 6788843

>KOG0840 consensus ATP-dependent Clp protease, proteolytic subunit [Posttranslational modification, protein turnover, chaperones]

Probab=93.29  E-value=0.39  Score=44.97  Aligned_cols=132  Identities=17%  Similarity=0.202  Sum_probs=79.7

Q ss_pred             CCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhHHHHHHHHHHHHHHHHhcCCeEEEEecC
Q 016290           36 ISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALAHG  115 (392)
Q Consensus        36 l~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IA~v~G  115 (392)
                      ++.++-+.+...|-.++.++.-|=|.+-=.    |-||++.+-                 +.++..|.-++-||-..+=|
T Consensus       101 Idd~va~~viaqlL~Ld~ed~~K~I~lyIN----SPGG~vtag-----------------lAIYDtMq~ik~~V~Tic~G  159 (275)
T KOG0840|consen  101 IDDDVANLVIAQLLYLDSEDPKKPIYLYIN----SPGGSVTAG-----------------LAIYDTMQYIKPDVSTICVG  159 (275)
T ss_pred             CcHHHHHHHHHHHHHhhccCCCCCeEEEEe----CCCCccchh-----------------hhHHHHHHhhCCCceeeehh
Confidence            788899999888888876655555544321    445544211                 22344456667777666677


Q ss_pred             ceecccccccccCceEEEeCCeeeeccccccCccCCchhHH-----HHhh------cchH-HHHHHhhcCCc--------
Q 016290          116 ITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSF-----IHSR------LPGH-LGEFLALTGAR--------  175 (392)
Q Consensus       116 ~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~-----~L~r------l~G~-~a~~L~ltG~~--------  175 (392)
                      .|.+-|.-|..++     +..-+++||..++=++-..|+..     +.-+      +--. .-.|.--||++        
T Consensus       160 ~Aas~aalLLaaG-----~KG~R~alPnsriMIhQP~gga~Gqa~Di~i~akE~~~~k~~l~~i~a~~Tgq~~e~i~~d~  234 (275)
T KOG0840|consen  160 LAASMAALLLAAG-----AKGKRYALPNSRIMIHQPSGGAGGQATDIVIQAKELMRIKEYLNEIYAKHTGQPLEVIEKDM  234 (275)
T ss_pred             hHHhHHHHHHhcC-----CCcceeecCCceeEEeccCCCcCccchHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHhhh
Confidence            7766665444433     45667888888887763333321     1111      1111 12233346665        


Q ss_pred             -----ccHHHHHHcCccceecCC
Q 016290          176 -----LNGKELVAAGLATHFVPS  193 (392)
Q Consensus       176 -----l~a~eA~~~GLv~~vv~~  193 (392)
                           ++++||++.||+|+|+..
T Consensus       235 dRd~fmsa~EA~eyGliD~v~~~  257 (275)
T KOG0840|consen  235 DRDRFMSAEEAKEYGLIDKVIDH  257 (275)
T ss_pred             cccccCCHHHHHHhcchhhhhcC
Confidence                 899999999999999864

>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]

Probab=92.91  E-value=0.95  Score=47.17  Aligned_cols=165  Identities=15%  Similarity=0.107  Sum_probs=97.2

Q ss_pred             eCCEEEEEEcCCCCCC-CCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhHHHHHHHHHH
Q 016290           19 IGNVRLVTLNRPRQLN-VISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYW   97 (392)
Q Consensus        19 ~~~v~~itLnrp~~lN-al~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~~~~~~~~~   97 (392)
                      .|...-|.-|+|.... +|+.+-.....+.++.++. -++-+|.|.-. ..|..|-+-           ......+..-+
T Consensus       292 ~G~pVGiian~~~~~~G~~~~~~a~K~arfi~lcd~-~~iPlv~l~dt-pGf~~g~~~-----------E~~g~~~~ga~  358 (493)
T PF01039_consen  292 GGRPVGIIANNPRQRAGALDPDGARKAARFIRLCDA-FNIPLVTLVDT-PGFMPGPEA-----------ERAGIIRAGAR  358 (493)
T ss_dssp             TTEEEEEEEE-TTCGGGEB-HHHHHHHHHHHHHHHH-TT--EEEEEEE-CEB--SHHH-----------HHTTHHHHHHH
T ss_pred             CCcceEEEEeccccccccCChHHHHHHHHHHHHHHh-hCCceEEEeec-ccccccchh-----------hhcchHHHHHH
Confidence            4444445557776433 6999999999999999887 57788888643 233333211           11234455678


Q ss_pred             HHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcchH------------H
Q 016290           98 LCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGH------------L  165 (392)
Q Consensus        98 l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G~------------~  165 (392)
                      +++++..++.|.|.++=|-+.|||. +++++.  ....+..|+.|-..+|+.+.-|+...+.+.--.            .
T Consensus       359 ~~~a~~~~~vP~itvi~~~~~Gga~-~am~~~--~~~~~~~~Awp~a~~~vm~~e~a~~i~~~~~~~~~~~~~~~~~~~~  435 (493)
T PF01039_consen  359 LLYALAEATVPKITVIVRKAYGGAY-YAMCGR--GYGPDFVFAWPTAEIGVMGPEGAASILYRDELEAAEAEGADPEAQR  435 (493)
T ss_dssp             HHHHHHHH-S-EEEEEEEEEEHHHH-HHTTGG--GGTTSEEEEETT-EEESS-HHHHHHHHTHHHHHHSCHCCHSHHHHH
T ss_pred             HHHHHHcCCCCEEEEEeCCccCcch-hhhccc--ccchhhhhhhhcceeeecChhhhheeeehhhhhhhhcccchhHHHH
Confidence            9999999999999999999999875 333331  112233466666667776666665555442110            1


Q ss_pred             HHHHhhc-CCcccHHHHHHcCccceecCCCChHHH
Q 016290          166 GEFLALT-GARLNGKELVAAGLATHFVPSEKLPEL  199 (392)
Q Consensus       166 a~~L~lt-G~~l~a~eA~~~GLv~~vv~~~~l~~~  199 (392)
                      ...+.-. -...++..+...|++|.++++.+....
T Consensus       436 ~~~~~~~~~~~~~~~~~a~~~~~D~ii~p~~tR~~  470 (493)
T PF01039_consen  436 AEKIAEYEDELSSPYRAASRGYVDDIIDPAETRKV  470 (493)
T ss_dssp             HHHHHHHHHHHSSHHHHHHTTSSSEESSGGGHHHH
T ss_pred             HHHHHHHHHhcCCHHHHHhcCCCCCccCHHHHHHH
Confidence            1111111 122578889999999999999887643

The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....

>COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]

Probab=92.18  E-value=0.63  Score=48.30  Aligned_cols=105  Identities=13%  Similarity=0.122  Sum_probs=68.2

Q ss_pred             eCCEEEEEE-cCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhHHHHHHHHHH
Q 016290           19 IGNVRLVTL-NRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYW   97 (392)
Q Consensus        19 ~~~v~~itL-nrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~~~~~~~~~   97 (392)
                      +|.-..+.. +.+.+.-++..--...+..+.+.+.++. .-+|.|.-     |+|+.+.+-...       .+.+...+.
T Consensus        89 ~Gr~~~v~a~D~TV~gGt~~~~~~~Ki~r~~~~A~~~g-~P~i~l~d-----sgGari~~~v~~-------l~g~g~iF~  155 (526)
T COG4799          89 NGRKVFVFANDFTVKGGTLGEMTAKKILRAQELAIENG-LPVIGLND-----SGGARIQEGVPS-------LAGYGRIFY  155 (526)
T ss_pred             CCeEEEEEEecCceecccccccccchHHHHHHHHHHcC-CCEEEEEc-----ccccccccCccc-------cccchHHHH
Confidence            343333434 4555777888878888888887777654 44555543     334444332211       111222233


Q ss_pred             HHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCe
Q 016290           98 LCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKT  137 (392)
Q Consensus        98 l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a  137 (392)
                      -+..++.. .|.|++|-|.|.|||+-+...||+.|+++++
T Consensus       156 ~~a~~Sg~-IPqIsvv~G~c~gGgaY~pal~D~~imv~~~  194 (526)
T COG4799         156 RNARASGV-IPQISVVMGPCAGGGAYSPALTDFVIMVRDQ  194 (526)
T ss_pred             HHHHhccC-CCEEEEEEecCcccccccccccceEEEEcCC
Confidence            34445555 9999999999999999999999999999985

>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain

Probab=89.35  E-value=6.7  Score=41.59  Aligned_cols=148  Identities=11%  Similarity=0.092  Sum_probs=93.2

Q ss_pred             CCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhHHHHHHHHHHHHHHHHhcCCeEEEEe
Q 016290           34 NVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALA  113 (392)
Q Consensus        34 Nal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IA~v  113 (392)
                      -+++.+-.+...+.++..++ -++-+|.|.-.. .|..|-+-..           ....+...++++.+.....|.|++|
T Consensus       380 g~l~~~~a~Kaarfi~lc~~-~~iPlv~l~D~p-Gf~~G~~~E~-----------~G~~~~~a~l~~A~a~~~VP~isvi  446 (569)
T PLN02820        380 GILFTESALKGAHFIELCAQ-RGIPLLFLQNIT-GFMVGSRSEA-----------SGIAKAGAKMVMAVACAKVPKITII  446 (569)
T ss_pred             CccCHHHHHHHHHHHHHHHh-cCCCEEEEEECC-CCCCCHHHHH-----------hhHHHHHHHHHHHHHhCCCCEEEEE
Confidence            35888999999998888876 567777775322 2444432211           2345566789999999999999999


Q ss_pred             cCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhc-c------------hHH-HHHH---hhcCCcc
Q 016290          114 HGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRL-P------------GHL-GEFL---ALTGARL  176 (392)
Q Consensus       114 ~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl-~------------G~~-a~~L---~ltG~~l  176 (392)
                      =|.+.|||.--.+...+   ..+-.|+.|...+|..+.-|+.-.+.+. .            -.. +..-   -..-+..
T Consensus       447 ~g~a~G~g~~aM~g~~~---~~d~~~awp~A~i~vmg~e~aa~il~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  523 (569)
T PLN02820        447 VGGSFGAGNYGMCGRAY---SPNFLFMWPNARIGVMGGAQAAGVLAQIERENKKRQGIQWSKEEEEAFKAKTVEAYEREA  523 (569)
T ss_pred             ECCcchHHHHHhcCcCC---CCCEEEECCCCeEEecCHHHHHHHHHHHHhhhhhhccccCCccHHHHHHHHHHHHHHHhC
Confidence            99999886432221111   1233455566677777777777666542 0            111 0000   1112245


Q ss_pred             cHHHHHHcCccceecCCCChH
Q 016290          177 NGKELVAAGLATHFVPSEKLP  197 (392)
Q Consensus       177 ~a~eA~~~GLv~~vv~~~~l~  197 (392)
                      ++..+-..|++|.|+++.+-.
T Consensus       524 ~p~~aa~~~~vD~VIdP~dTR  544 (569)
T PLN02820        524 NPYYSTARLWDDGVIDPADTR  544 (569)
T ss_pred             CHHHHHHcCCcCcccCHHHHH
Confidence            667788899999999887654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	392
3bpt_A	363	Crystal Structure Of Human Beta-Hydroxyisobutyryl-C		2e-61
4hdt_A	353	Crystal Structure Of A Carnitinyl-Coa Dehydratase F		3e-44
4j2u_A	365	Crystal Structure Of An Enoyl-coa Hydratase From Rh		7e-33
3ju1_A	407	Crystal Structure Of Enoyl-Coa HydrataseISOMERASE F		4e-28
3hrx_A	254	Crystal Structure Of Phenylacetic Acid Degradation		2e-18
1ey3_A	258	Structure Of Enoyl-Coa Hydratase Complexed With The		9e-16
1mj3_A	260	Crystal Structure Analysis Of Rat Enoyl-Coa Hydrata		9e-16
1dub_A	261	2-Enoyl-Coa Hydratase, Data Collected At 100 K, Ph		1e-15
2hw5_A	286	The Crystal Structure Of Human Enoyl-Coenzyme A (Co		7e-15
3r0o_A	273	Crystal Structure Of Carnitinyl-Coa Hydratase From		1e-14
2pbp_A	258	Crystal Structure Of Enoyl-Coa Hydrates Subunit I (		2e-14
2j5i_A	276	Crystal Structure Of Hydroxycinnamoyl-Coa Hydratase		1e-12
2vss_E	276	Wild-Type Hydroxycinnamoyl-Coa Hydratase Lyase In C		1e-12
1uiy_A	253	Crystal Structure Of Enoyl-Coa Hydratase From Therm		1e-12
2vss_F	276	Wild-Type Hydroxycinnamoyl-Coa Hydratase Lyase In C		1e-12
2j5i_B	276	Crystal Structure Of Hydroxycinnamoyl-Coa Hydratase		1e-12
2j5i_I	276	Crystal Structure Of Hydroxycinnamoyl-Coa Hydratase		1e-12
3rsi_A	265	The Structure Of A Putative Enoyl-Coa HydrataseISOM		2e-12
3r9t_A	267	Structure Of Echa1_1 From Mycobacterium Paratubercu		2e-12
2vsu_E	276	A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase		2e-12
2vsu_A	276	A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase		3e-12
2vsu_F	276	A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase		3e-12
2vsu_C	275	A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase		3e-12
3r9s_A	267	Structure Of A Carnitinyl-Coa Dehydratase From Myco		3e-12
3tlf_A	274	Crystal Structure Of An Enoyl-Coa HydrataseISOMERAS		7e-12
3rrv_A	276	Crystal Structure Of An Enoyl-Coa HydrataseISOMERAS		1e-11
2vx2_A	287	Crystal Structure Of Human Enoyl Coenzyme A Hydrata		4e-11
3h81_A	278	Crystal Structure Of Enoyl-Coa Hydratase From Mycob		7e-11
3pzk_A	257	Crystal Structure Of The Mycobacterium Tuberculosis		7e-11
3q0j_A	258	Crystal Structure Of The Mycobacterium Tuberculosis		8e-11
3pea_A	261	Crystal Structure Of Enoyl-Coa Hydratase From Bacil		1e-10
2vre_A	296	Crystal Structure Of Human Peroxisomal Delta3,5, De		6e-10
1dci_A	275	Dienoyl-Coa Isomerase Length = 275		7e-10
3qxi_A	265	Crystal Structure Of Enoyl-Coa Hydratase Echa1 From		8e-10
3qyr_A	253	Crystal Structure Of Enoyl-Coa Hydratase Echa16_2 M		1e-09
3p85_A	270	Crystal Structure Enoyl-Coa Hydratase From Mycobact		1e-09
3qmj_A	256	Crystal Structure Of Enoyl-Coa Hydratase Echa8_6 Fr		1e-09
2ej5_A	257	Crystal Structure Of Gk2038 Protein (Enoyl-Coa Hydr		1e-09
3trr_A	256	Crystal Structure Of A Probable Enoyl-Coa Hydratase		2e-09
4fzw_A	258	Crystal Structure Of The Paaf-paag Hydratase-isomer		2e-09
3kqf_A	265	1.8 Angstrom Resolution Crystal Structure Of Enoyl-		2e-09
4f47_A	278	The Structure Of Enoyl-Coa Hydratase Echa19 From My		3e-09
3hin_A	275	Crystal Structure Of Putative Enoyl-Coa Hydratase F		1e-08
2fbm_A	291	Acetyltransferase Domain Of Cdy1 Length = 291		2e-08
3p5m_A	255	Crystal Structure Of An Enoyl-Coa HydrataseISOMERAS		3e-08
3pe8_A	256	Crystal Structure Of Enoyl-Coa Hydratase From Mycob		3e-08
3isa_A	254	Crystal Structure Of Putative Enoyl-Coa HydrataseIS		3e-08
3moy_A	263	Crystal Structure Of Probable Enoyl-Coa Hydratase F		3e-08
2iex_A	272	Crystal Structure Of Dihydroxynapthoic Acid Synthet		5e-08
2fw2_A	260	Catalytic Domain Of Cdy Length = 260		6e-08
4els_A	285	Structure Of E. Coli. 1,4-Dihydroxy-2- Naphthoyl Co		9e-08
4fzw_C	274	Crystal Structure Of The Paaf-paag Hydratase-isomer		1e-07
3myb_A	286	Crystal Structure Of Enoyl-Coa Hydratase Mycobacter		1e-07
3t88_A	289	Crystal Structure Of Escherichia Coli Menb In Compl		1e-07
3sll_A	290	Crystal Structure Of A Probable Enoyl-Coa Hydratase		2e-07
2f6q_A	280	The Crystal Structure Of Human Peroxisomal Delta3,		3e-07
1jxz_A	269	Structure Of The H90q Mutant Of 4-Chlorobenzoyl-Coe		5e-07
1nzy_A	269	4-Chlorobenzoyl Coenzyme A Dehalogenase From Pseudo		6e-07
3qka_A	261	Crystal Structure Of Enoyl-Coa Hydratase Echa5 From		6e-07
3fdu_A	266	Crystal Structure Of A Putative Enoyl-Coa Hydratase		6e-07
1nzy_B	269	4-Chlorobenzoyl Coenzyme A Dehalogenase From Pseudo		7e-07
3l3s_A	263	Crystal Structure Of An Enoyl-Coa HydrotaseISOMERAS		8e-07
3t3w_A	279	Crystal Structure Of Probable Enoyl-Coa Hydratase F		8e-07
2uzf_A	273	Crystal Structure Of Staphylococcus Aureus 1,4-Dihy		1e-06
3h02_A	288	2.15 Angstrom Resolution Crystal Structure Of Napht		1e-06
3qxz_A	265	Crystal Structure Of A Probable Enoyl-Coa Hydratase		8e-06
3ome_A	282	Crystal Structure Of A Probable Enoyl-Coa Hydratase		1e-05
2gtr_A	261	Human Chromodomain Y-Like Protein Length = 261		2e-05
2a7k_A	250	Carboxymethylproline Synthase (carb) From Pectobact		3e-05
3i47_A	268	Crystal Structure Of Putative Enoyl Coa HydrataseIS		2e-04
3m6m_A	305	Crystal Structure Of Rpff Complexed With Rec Domain		2e-04
4eml_A	275	Synechocystis Sp. Pcc 6803 1,4-Dihydroxy-2-Naphthoy		2e-04
3lke_A	263	Crystal Structure Of Enoyl-Coa Hydratase From Bacil		4e-04

>pdb|3BPT|A Chain A, Crystal Structure Of Human Beta-Hydroxyisobutyryl-Coa Hydrolase In Complex With Quercetin Length = 363

Iteration: 1
 Score =  233 bits (593), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 138/363 (38%), Positives = 206/363 (56%), Gaps = 14/363 (3%)
Query: 11  EQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVG-RAF 69
           E+V+LG++ G   ++TLNRP+ LN ++   +  +   L+KWE+D +  L+I+KG G +AF
Sbjct: 6   EEVLLGKK-GCTGVITLNRPKFLNALTLNXIRQIYPQLKKWEQDPETFLIIIKGAGGKAF 64
Query: 70  SAGGDLKMFYDGRNSKDSCLEVVYRM-YWLCHHIHTYKKTQVALAHGITMGGGASLMVPL 128
            AGGD+++  +   +K     V +R  Y L + + + +K  VAL HGIT GGG  L V  
Sbjct: 65  CAGGDIRVISEAEKAKQKIAPVFFREEYXLNNAVGSCQKPYVALIHGITXGGGVGLSVHG 124
Query: 129 KFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHLGEFLALTGARLNGKELVAAGLAT 188
           +F V TEK +F+ PE +IG   D G  +   RL G LG FLALTG RL G+++  AG+AT
Sbjct: 125 QFRVATEKCLFAXPETAIGLFPDVGGGYFLPRLQGKLGYFLALTGFRLKGRDVYRAGIAT 184
Query: 189 HFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVL---NKQSIIDECFSK 245
           HFV SEKL  LE+ L+ L +  +  + S +E +  + ++D             I+ CFS 
Sbjct: 185 HFVDSEKLAXLEEDLLALKSPSKENIASVLENYHTESKIDRDKSFILEEHXDKINSCFSA 244
Query: 246 ETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEF 305
            TV EII++ +    ++G+ +    LK + K SPT LKITLR + EG  ++L E L  E+
Sbjct: 245 NTVEEIIENLQ----QDGSSFALEQLKVINKXSPTSLKITLRQLXEGSSKTLQEVLTXEY 300
Query: 306 RLTINILRAIISADIYEGIRALTIEKDNAPKWDPPTXXXXXXXXXXXXFQPFGEDLELQI 365
           RL+    R     D +EG+RA+ I+KD +PKW P              F+  G   +L+ 
Sbjct: 301 RLSQACXRG---HDFHEGVRAVLIDKDQSPKWKPADLKEVTEEDLNNHFKSLGSS-DLKF 356
Query: 366 PEN 368
            EN
Sbjct: 357 AEN 359

>pdb|4HDT|A Chain A, Crystal Structure Of A Carnitinyl-Coa Dehydratase From Mycobacterium Thermoresistibile Length = 353

Iteration: 1
 Score =  176 bits (445), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 120/363 (33%), Positives = 184/363 (50%), Gaps = 19/363 (5%)
Query: 5   VVKNPDEQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKG 64
           +V   +E V++  E G V L+TLNRP+ +N ++  +V+ +AE L  WE DD  + V++ G
Sbjct: 3   MVTAKNEDVLVNVE-GGVGLLTLNRPKAINSLTHGMVTTMAERLAAWENDDSVRAVLLTG 61
Query: 65  VG-RAFSAGGDL-KMFYDGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGA 122
            G R   AGGD+  +++  +          +  Y L  HI  Y K  V++  GI MGGG 
Sbjct: 62  AGERGLCAGGDVVAIYHSAKADGAEARRFWFDEYRLNAHIGRYPKPYVSIMDGIVMGGGV 121
Query: 123 SLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHLGEFLALTGARLNGKELV 182
            +       VVT+ T  + PE  IGF  D G +++ SR PG LG   ALTGA  +G + +
Sbjct: 122 GVGAHGNVRVVTDTTKMAMPEVGIGFIPDVGGTYLLSRAPGKLGLHAALTGAPFSGADAI 181
Query: 183 AAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDEC 242
             G A H+VP +K+ E  + +I    G + A+ +  +E           +  ++S IDEC
Sbjct: 182 VMGFADHYVPHDKIDEFTRAVIA--DGVDAALAAHAQEPP------ASPLAEQRSWIDEC 233
Query: 243 FSKETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGRE-QSLAECL 301
           ++ +TVA+II +  A          G     +   SP  L +TL SVR   + QSL + L
Sbjct: 234 YTGDTVADIIAALRAHDAPAA----GEAADLIATRSPIALSVTLESVRRAAKLQSLEDTL 289
Query: 302 KKEFRLTINILRAIISADIYEGIRALTIEKDNAPKWDPPTXXXXXXXXXXXXFQPFGEDL 361
           ++E+R++   L+   S D+ EGIRA  ++KD  PKW P T            F P   +L
Sbjct: 290 RQEYRVSCASLK---SHDLVEGIRAQLVDKDRNPKWRPATLAEVTEADVEAYFAPVDPEL 346
Query: 362 ELQ 364
             +
Sbjct: 347 TFE 349

>pdb|4J2U|A Chain A, Crystal Structure Of An Enoyl-coa Hydratase From Rhodobacter Sphaeroides 2.4.1 Length = 365

Iteration: 1
 Score =  137 bits (346), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 106/317 (33%), Positives = 146/317 (46%), Gaps = 24/317 (7%)
Query: 25  VTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVG-RAFSAGGDLKMFYDGRN 83
           +TL+RP  LN ++   V  +   L  W  D + +LV++   G RAF AGGD+   +    
Sbjct: 37  ITLSRPAALNALTCAXVQEIDAALRGWIGDPEVELVVIDAEGPRAFCAGGDIAELHGRGV 96
Query: 84  SKDSCL-EVVYRM-YWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFST 141
           + D    +  +R+ Y     I  + K  V+L  G T GGG  L    +  +V E +  S 
Sbjct: 97  AGDHAFGQDFWRVEYRXNDRIAAFPKPIVSLXQGFTXGGGVGLGCHARHRIVGETSQISX 156
Query: 142 PEASIGFHTDCGFSFIHSRLPGHLGEFLALTGARLNGKELVAAGLATHFVPSEKLPELEK 201
           PE +IG   D G + + +R PG +G +L LTGAR    + + AG A  FVP    P+L  
Sbjct: 157 PECAIGLVPDVGGTHLLARAPGRIGVWLGLTGARXGPGDAIFAGFADRFVPEADWPDL-- 214
Query: 202 RLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKETVAEIIKSFEAEAGK 261
            +  L  GD      A  E    V          Q  ID  F+  T+AEI    EA    
Sbjct: 215 -IAALEGGDLALPDHAAPEGRLPVL---------QDEIDRLFAG-TLAEIPARLEA---- 259
Query: 262 EGNGWIGPVLKGLKKSSPTGLKITLRSV-REGREQSLAECLKKEFRLTINILRAIISADI 320
                    LK L++SSP  L  TL  + R G    + E L  E+R T    RA   AD 
Sbjct: 260 TDTPLAAEALKALRRSSPLALAATLEILQRLGPSAGIREALDLEYRFT---YRAQGQADF 316
Query: 321 YEGIRALTIEKDNAPKW 337
            EGIRA  I+KD +P+W
Sbjct: 317 LEGIRAAIIDKDRSPRW 333

>pdb|3JU1|A Chain A, Crystal Structure Of Enoyl-Coa HydrataseISOMERASE FAMILY PROTEIN Length = 407

Iteration: 1
 Score =  122 bits (305), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 101/332 (30%), Positives = 145/332 (43%), Gaps = 25/332 (7%)
Query: 22  VRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVG-RAFSAGGDLKMFYD 80
           V +VTLN  + LN +    V      L  W+KD     V++ G G +AF AGGD++  Y 
Sbjct: 52  VGVVTLNVEKALNALDLDXVRAXTVQLNLWKKDPLIACVVLDGSGEKAFCAGGDVRALYH 111
Query: 81  GR-NSKDSCLEVV-------YRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSV 132
               +K    EV        YR+ +L   +HTY K  +    GI  GGG  L       V
Sbjct: 112 ASVAAKGQVTEVAKVFFEEEYRLDYL---LHTYGKPVLVWGDGIVXGGGLGLXAGASHKV 168
Query: 133 VTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHLGEFLALTGARLNGKELVAAGLATHFVP 192
           VTE +  + PE +IG + D G S+  +R PG  G FL LT    N  +    GLA H++ 
Sbjct: 169 VTETSRIAXPEVTIGLYPDVGGSYFLNRXPGKXGLFLGLTAYHXNAADACYVGLADHYLN 228
Query: 193 SEKLPELEKRLIGLNTGDEIAVK-----SAIEEFSEDVQL-DGQSVL-NKQSIIDECFSK 245
            +           L+  D  A+      + I E S  V +  G SVL   Q  ID     
Sbjct: 229 RDDKELXFDAXATLDWSDSPALNHQRLDTXINELSNQVDIPKGDSVLAESQEXIDR-LXA 287
Query: 246 ETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEF 305
            ++ +I+      +  E   W+          SP    +     + G + SLA+C K E 
Sbjct: 288 GSLTDIVTRXSTLSTDE--AWLSKACATXLAGSPISWHLAYIQTQLGTKLSLAQCFKWEL 345
Query: 306 RLTINILRAIISADIYEGIRALTIEKDNAPKW 337
            +++N+       D  EG+RAL I+KD  PKW
Sbjct: 346 TVSVNV---CAKGDFCEGVRALLIDKDKQPKW 374

>pdb|3HRX|A Chain A, Crystal Structure Of Phenylacetic Acid Degradation Protein Paag Length = 254

Iteration: 1
 Score = 90.1 bits (222), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 62/187 (33%), Positives = 95/187 (50%), Gaps = 4/187 (2%)
Query: 13  VVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAG 72
           +VL E    V ++TLNRP +LN I+ +++  L   L++ E+D + + +++ G GRAFSAG
Sbjct: 1   MVLKERQDGVLVLTLNRPEKLNAITGELLDALYAALKEGEEDREVRALLLTGAGRAFSAG 60
Query: 73  GDLKMFYDGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSV 132
            DL  F D +   ++ L    R   +   +   +K  V   +G+  G G SL +     +
Sbjct: 61  QDLTEFGDRKPDYEAHLR---RYNRVVEALSGLEKPLVVAVNGVAAGAGMSLALWGDLRL 117
Query: 133 VTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHL-GEFLALTGARLNGKELVAAGLATHFV 191
                 F+T    IG   D G SF+  RL G    + L L   RL+ +E +A GL    V
Sbjct: 118 AAVGASFTTAFVRIGLVPDSGLSFLLPRLVGLAKAQELLLLSPRLSAEEALALGLVHRVV 177
Query: 192 PSEKLPE 198
           P+EKL E
Sbjct: 178 PAEKLME 184

>pdb|1EY3|A Chain A, Structure Of Enoyl-Coa Hydratase Complexed With The Substrate Dac-Coa Length = 258

Iteration: 1
 Score = 81.3 bits (199), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 60/194 (30%), Positives = 96/194 (49%), Gaps = 14/194 (7%)
Query: 12  QVVLGEEIG---NVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRA 68
           Q ++ E+ G   +V L+ LNRP+ LN + + ++  L + LE +E+D     +++ G  +A
Sbjct: 2   QYIITEKKGKNSSVGLIQLNRPKALNALCNGLIEELNQALETFEEDPAVGAIVLTGGEKA 61
Query: 69  FSAGGDLKMFYDGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPL 128
           F+AG D+K   + R  +D C    +  +W   HI   KK  +A  +G  +GGG  L +  
Sbjct: 62  FAAGADIKEMQN-RTFQD-CYSGKFLSHW--DHITRIKKPVIAAVNGYALGGGCELAMMC 117
Query: 129 KFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHLGEFLA----LTGARLNGKELVAA 184
                 EK  F  PE  +G     G +    RL   +G+ LA    LTG R++ ++   A
Sbjct: 118 DIIYAGEKAQFGQPEILLGTIPGAGGT---QRLTRAVGKSLAMEMVLTGDRISAQDAKQA 174
Query: 185 GLATHFVPSEKLPE 198
           GL +   P E L E
Sbjct: 175 GLVSKIFPVETLVE 188

>pdb|1MJ3|A Chain A, Crystal Structure Analysis Of Rat Enoyl-Coa Hydratase In Complex With Hexadienoyl-Coa Length = 260

Iteration: 1
 Score = 81.3 bits (199), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 60/194 (30%), Positives = 96/194 (49%), Gaps = 14/194 (7%)
Query: 12  QVVLGEEIG---NVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRA 68
           Q ++ E+ G   +V L+ LNRP+ LN + + ++  L + LE +E+D     +++ G  +A
Sbjct: 4   QYIITEKKGKNSSVGLIQLNRPKALNALCNGLIEELNQALETFEEDPAVGAIVLTGGEKA 63
Query: 69  FSAGGDLKMFYDGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPL 128
           F+AG D+K   + R  +D C    +  +W   HI   KK  +A  +G  +GGG  L +  
Sbjct: 64  FAAGADIKEMQN-RTFQD-CYSGKFLSHW--DHITRIKKPVIAAVNGYALGGGCELAMMC 119
Query: 129 KFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHLGEFLA----LTGARLNGKELVAA 184
                 EK  F  PE  +G     G +    RL   +G+ LA    LTG R++ ++   A
Sbjct: 120 DIIYAGEKAQFGQPEILLGTIPGAGGT---QRLTRAVGKSLAMEMVLTGDRISAQDAKQA 176
Query: 185 GLATHFVPSEKLPE 198
           GL +   P E L E
Sbjct: 177 GLVSKIFPVETLVE 190

>pdb|1DUB|A Chain A, 2-Enoyl-Coa Hydratase, Data Collected At 100 K, Ph 6.5 Length = 261

Iteration: 1
 Score = 81.3 bits (199), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 60/194 (30%), Positives = 96/194 (49%), Gaps = 14/194 (7%)
Query: 12  QVVLGEEIG---NVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRA 68
           Q ++ E+ G   +V L+ LNRP+ LN + + ++  L + LE +E+D     +++ G  +A
Sbjct: 5   QYIITEKKGKNSSVGLIQLNRPKALNALCNGLIEELNQALETFEEDPAVGAIVLTGGEKA 64
Query: 69  FSAGGDLKMFYDGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPL 128
           F+AG D+K   + R  +D C    +  +W   HI   KK  +A  +G  +GGG  L +  
Sbjct: 65  FAAGADIKEMQN-RTFQD-CYSGKFLSHW--DHITRIKKPVIAAVNGYALGGGCELAMMC 120
Query: 129 KFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHLGEFLA----LTGARLNGKELVAA 184
                 EK  F  PE  +G     G +    RL   +G+ LA    LTG R++ ++   A
Sbjct: 121 DIIYAGEKAQFGQPEILLGTIPGAGGT---QRLTRAVGKSLAMEMVLTGDRISAQDAKQA 177
Query: 185 GLATHFVPSEKLPE 198
           GL +   P E L E
Sbjct: 178 GLVSKIFPVETLVE 191

>pdb|2HW5|A Chain A, The Crystal Structure Of Human Enoyl-Coenzyme A (Coa) Hydratase Short Chain 1, Echs1 Length = 286

Iteration: 1
 Score = 78.2 bits (191), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 58/203 (28%), Positives = 95/203 (46%), Gaps = 14/203 (6%)
Query: 3   QGVVKNPDEQVVLGEEIG---NVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKL 59
           Q +    + + ++ E+ G    V L+ LNRP+ LN +   ++  L + L+ +E+D     
Sbjct: 21  QSMASGANFEYIIAEKRGKNNTVGLIQLNRPKALNALCDGLIDELNQALKIFEEDPAVGA 80
Query: 60  VIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMG 119
           +++ G  +AF+AG D+K   +   S   C    +  +W   H+   KK  +A  +G   G
Sbjct: 81  IVLTGGDKAFAAGADIKEMQN--LSFQDCYSSKFLKHW--DHLTQVKKPVIAAVNGYAFG 136
Query: 120 GGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHLGEFLA----LTGAR 175
           GG  L +        EK  F+ PE  IG     G +    RL   +G+ LA    LTG R
Sbjct: 137 GGCELAMMCDIIYAGEKAQFAQPEILIGTIPGAGGT---QRLTRAVGKSLAMEMVLTGDR 193
Query: 176 LNGKELVAAGLATHFVPSEKLPE 198
           ++ ++   AGL +   P E L E
Sbjct: 194 ISAQDAKQAGLVSKICPVETLVE 216

>pdb|3R0O|A Chain A, Crystal Structure Of Carnitinyl-Coa Hydratase From Mycobacterium Avium Length = 273

Iteration: 1
 Score = 77.4 bits (189), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 51/184 (27%), Positives = 84/184 (45%), Gaps = 7/184 (3%)
Query: 12  QVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVG-RAFS 70
           Q  + E  GNV L+T++RP   N ++  V + + + LE+ ++D +   V++ G G ++F 
Sbjct: 15  QAAVVERRGNVALITIDRPDARNAVNGAVSTAVGDALEEAQRDPEVWAVVITGAGDKSFC 74
Query: 71  AGGDLKMFYDGRNSKDSCLEVVYRMYWLCHHIHTY-KKTQVALAHGITMGGGASLMVPLK 129
           AG DLK    G N         +  +    ++H +  K  +A  +G  +GGG+ L +   
Sbjct: 75  AGADLKAISRGEN----LYHAEHPEWGFAGYVHHFIDKPTIAAVNGTALGGGSELALASD 130
Query: 130 FSVVTEKTVFSTPEASIGFHTDCGFSF-IHSRLPGHLGEFLALTGARLNGKELVAAGLAT 188
             +  E   F  PE   G     G  F I  +LP  +   L LTG  +   + +  GL  
Sbjct: 131 LVIACESASFGLPEVKRGLIAGAGGVFRIVEQLPRKVALELVLTGEPMTASDALRWGLIN 190
Query: 189 HFVP 192
             VP
Sbjct: 191 EVVP 194

>pdb|2PBP|A Chain A, Crystal Structure Of Enoyl-Coa Hydrates Subunit I (Gk_2039) From Geobacillus Kaustophilus Hta426 Length = 258

Iteration: 1
 Score = 77.0 bits (188), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 54/193 (27%), Positives = 95/193 (49%), Gaps = 17/193 (8%)
Query: 20  GNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFY 79
           G V ++ L RP  LN +S ++V+ +   +E ++++++ +++++ G GRAF+AG D++   
Sbjct: 13  GAVGIIELARPDVLNALSRQMVAEIVAAVEAFDRNEKVRVIVLTGRGRAFAAGADIQ--- 69
Query: 80  DGRNSKDSCLEVVYRMYWLCH-----HIHTYKKTQVALAHGITMGGGASLMVPLKFSVVT 134
               +KD  +    R+ WL        +   K   +A  +G+ +GGG  L +     V +
Sbjct: 70  --EMAKDDPI----RLEWLNQFADWDRLSIVKTPMIAAVNGLALGGGFELALSCDLIVAS 123
Query: 135 EKTVFSTPEASIGFHTDCGFSFIHSRL--PGHLGEFLALTGARLNGKELVAAGLATHFVP 192
               F  PE ++G     G +   ++L  P    E+L  TGAR++ KE    G+    V 
Sbjct: 124 SAAEFGFPEVNLGVMPGAGGTQRLTKLIGPKRALEWL-WTGARMSAKEAEQLGIVNRVVS 182
Query: 193 SEKLPELEKRLIG 205
            E L E   RL G
Sbjct: 183 PELLMEETMRLAG 195

>pdb|2J5I|A Chain A, Crystal Structure Of Hydroxycinnamoyl-Coa Hydratase-Lyase Length = 276

Iteration: 1
 Score = 70.9 bits (172), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 47/182 (25%), Positives = 82/182 (45%), Gaps = 4/182 (2%)
Query: 22  VRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDG 81
           +  V LNRP + N +S  +   + + LE  E+D  A ++++ G G A++AG DLK ++  
Sbjct: 19  IAFVILNRPEKRNAMSPTLNREMIDVLETLEQDPAAGVLVLTGAGEAWTAGMDLKEYFRE 78
Query: 82  RNSKDSCLEVVYRM---YWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTV 138
            ++    L+   R     W    +  Y K  +A+ +G   GGG S +V    ++  ++  
Sbjct: 79  VDAGPEILQEKIRREASQWQWKLLRMYAKPTIAMVNGWCFGGGFSPLVACDLAICADEAT 138
Query: 139 FSTPEASIGFHTDCGFSFIHSRLPGHLGEFL-ALTGARLNGKELVAAGLATHFVPSEKLP 197
           F   E + G       S   +   GH    +  +TG    G++    GL    VP  +L 
Sbjct: 139 FGLSEINWGIPPGNLVSKAMADTVGHRQSLMYIMTGKTFGGQKAAEMGLVNESVPLAQLR 198
Query: 198 EL 199
           E+
Sbjct: 199 EV 200

>pdb|2VSS|E Chain E, Wild-Type Hydroxycinnamoyl-Coa Hydratase Lyase In Complex With Acetyl-Coa And Vanillin Length = 276

Iteration: 1
 Score = 70.9 bits (172), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 47/182 (25%), Positives = 82/182 (45%), Gaps = 4/182 (2%)
Query: 22  VRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDG 81
           +  V LNRP + N +S  +   + + LE  E+D  A ++++ G G A++AG DLK ++  
Sbjct: 19  IAFVILNRPEKRNAMSPTLNREMIDVLETLEQDPAAGVLVLTGAGEAWTAGMDLKEYFRE 78
Query: 82  RNSKDSCLEVVYRM---YWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTV 138
            ++    L+   R     W    +  Y K  +A+ +G   GGG S +V    ++  ++  
Sbjct: 79  VDAGPEILQEKIRREASQWQWKLLRMYAKPTIAMVNGWCFGGGFSPLVACDLAICADEAT 138
Query: 139 FSTPEASIGFHTDCGFSFIHSRLPGHLGE-FLALTGARLNGKELVAAGLATHFVPSEKLP 197
           F   E + G       S   +   GH    +  +TG    G++    GL    VP  +L 
Sbjct: 139 FGLSEINYGIPPGNLVSKAMADTVGHRQSLYYIMTGKTFGGQKAAEMGLVNESVPLAQLR 198
Query: 198 EL 199
           E+
Sbjct: 199 EV 200

>pdb|1UIY|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From Thermus Thermophilus Hb8 Length = 253

Iteration: 1
 Score = 70.9 bits (172), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 61/191 (31%), Positives = 83/191 (43%), Gaps = 9/191 (4%)
Query: 18  EIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKM 77
           E G+V +V LN P + N +S +    L + L+  E D   + V++ G G+AFSAG DL  
Sbjct: 5   EKGHVAVVFLNDPERRNPLSPEXALSLLQALDDLEADPGVRAVVLTGRGKAFSAGADLAF 64
Query: 78  FYDGRNSKDSCLEVVYR----MYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVV 133
                   +   E  YR    +  L H ++TY K  VA  +G  + GGA L +     V 
Sbjct: 65  L---ERVTELGAEENYRHSLSLXRLFHRVYTYPKPTVAAVNGPAVAGGAGLALACDLVVX 121
Query: 134 TEKTVFSTPEASIGFHTDCGFSFIHSRLPGH-LGEFLALTGARLNGKELVAAGLATHFVP 192
            E+      E  IGF      S I  R  G    + L LTG  +  +E  A GL     P
Sbjct: 122 DEEARLGYTEVKIGFVAAL-VSVILVRAVGEKAAKDLLLTGRLVEAREAKALGLVNRIAP 180
Query: 193 SEKLPELEKRL 203
             K  E  K L
Sbjct: 181 PGKALEEAKAL 191

>pdb|2VSS|F Chain F, Wild-Type Hydroxycinnamoyl-Coa Hydratase Lyase In Complex With Acetyl-Coa And Vanillin Length = 276

Iteration: 1
 Score = 70.9 bits (172), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 47/182 (25%), Positives = 82/182 (45%), Gaps = 4/182 (2%)
Query: 22  VRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDG 81
           +  V LNRP + N +S  +   + + LE  E+D  A ++++ G G A++AG DLK ++  
Sbjct: 19  IAFVILNRPERRNAMSPTLNREMIDVLETLEQDPAAGVLVLTGAGEAWTAGMDLKEYFRE 78
Query: 82  RNSKDSCLEVVYRM---YWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTV 138
            ++    L+   R     W    +  Y K  +A+ +G   GGG S +V    ++  ++  
Sbjct: 79  VDAGPEILQEKIRREASQWQWKLLRMYAKPTIAMVNGWCFGGGFSPLVACDLAICADEAT 138
Query: 139 FSTPEASIGFHTDCGFSFIHSRLPGHLGE-FLALTGARLNGKELVAAGLATHFVPSEKLP 197
           F   E + G       S   +   GH    +  +TG    G++    GL    VP  +L 
Sbjct: 139 FGLSEINWGIPPGNLVSKAMADTVGHRQSLYYIMTGKTFGGQKAAEMGLVNESVPLAQLR 198
Query: 198 EL 199
           E+
Sbjct: 199 EV 200

>pdb|2J5I|B Chain B, Crystal Structure Of Hydroxycinnamoyl-Coa Hydratase-Lyase Length = 276

Iteration: 1
 Score = 70.9 bits (172), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 47/182 (25%), Positives = 82/182 (45%), Gaps = 4/182 (2%)
Query: 22  VRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDG 81
           +  V LNRP + N +S  +   + + LE  E+D  A ++++ G G A++AG DLK ++  
Sbjct: 19  IAFVILNRPEKRNAMSPTLNREMIDVLETLEQDPAAGVLVLTGAGEAWTAGMDLKEYFRE 78
Query: 82  RNSKDSCLEVVYRM---YWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTV 138
            ++    L+   R     W    +  Y K  +A+ +G   GGG S +V    ++  ++  
Sbjct: 79  VDAGPEILQEKIRREASQWQWKLLRMYAKPTIAMVNGWCFGGGFSPLVACDLAICADEAT 138
Query: 139 FSTPEASIGFHTDCGFSFIHSRLPGHLGE-FLALTGARLNGKELVAAGLATHFVPSEKLP 197
           F   E + G       S   +   GH    +  +TG    G++    GL    VP  +L 
Sbjct: 139 FGLSEINWGIPPGNLVSKAMADTVGHRQSLYYIMTGKTFGGQKAAEMGLVNESVPLAQLR 198
Query: 198 EL 199
           E+
Sbjct: 199 EV 200

>pdb|2J5I|I Chain I, Crystal Structure Of Hydroxycinnamoyl-Coa Hydratase-Lyase Length = 276

Iteration: 1
 Score = 70.5 bits (171), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 47/182 (25%), Positives = 82/182 (45%), Gaps = 4/182 (2%)
Query: 22  VRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDG 81
           +  V LNRP + N +S  +   + + LE  E+D  A ++++ G G A++AG DLK ++  
Sbjct: 19  IAFVILNRPEKRNAMSPTLNREMIDVLETLEQDPAAGVLVLTGAGEAWTAGMDLKEYFRE 78
Query: 82  RNSKDSCLEVVYRM---YWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTV 138
            ++    L+   R     W    +  Y K  +A+ +G   GGG S +V    ++  ++  
Sbjct: 79  VDAGPEILQEKIRREASQWQWKLLRMYAKPTIAMVNGWCFGGGFSPLVACDLAICADEAT 138
Query: 139 FSTPEASIGFHTDCGFSFIHSRLPGHLGE-FLALTGARLNGKELVAAGLATHFVPSEKLP 197
           F   E + G       S   +   GH    +  +TG    G++    GL    VP  +L 
Sbjct: 139 FGLSEINWGIPPGNLVSKAMADTVGHRQSLYYIMTGKTFGGQKAAEMGLVNESVPLAQLR 198
Query: 198 EL 199
           E+
Sbjct: 199 EV 200

>pdb|3RSI|A Chain A, The Structure Of A Putative Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Abscessus Atcc 19977 DSM 44196 Length = 265

Iteration: 1
 Score = 70.5 bits (171), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 59/211 (27%), Positives = 92/211 (43%), Gaps = 9/211 (4%)
Query: 14  VLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGG 73
           +L E  G V ++T+NRP + N +S+ +VS  A   ++ + DD  +  I+ G G A+  GG
Sbjct: 11  LLVERDGPVVILTMNRPHRRNALSTNMVSQFAAAWDEIDHDDGIRAAILTGAGSAYCVGG 70
Query: 74  DLKMFYDGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVV 133
           DL   +  R+     L+       L    HT  K  +A  +G  +GGG  ++      V 
Sbjct: 71  DLSDGWMVRDGSAPPLDPATIGKGLLLS-HTLTKPLIAAVNGACLGGGCEMLQQTDIRVS 129
Query: 134 TEKTVFSTPEASIGFHTDCG-FSFIHSRLPGHLGEFLALTGARLNGKELVAAGLATHFVP 192
            E   F  PE   G     G    +  ++P      + LTG  L   E    GL  H VP
Sbjct: 130 DEHATFGLPEVQRGLVPGAGSMVRLKRQIPYTKAMEMILTGEPLTAFEAYHFGLVGHVVP 189
Query: 193 S----EKLPELEKRLIGLNTGDEIAVKSAIE 219
           +    +K   L  R++       +AV++A E
Sbjct: 190 AGTALDKARSLADRIV---RNGPLAVRNAKE 217

>pdb|3R9T|A Chain A, Structure Of Echa1_1 From Mycobacterium Paratuberculosis Atcc Baa-968 K-10 Length = 267

Iteration: 1
 Score = 70.1 bits (170), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 52/185 (28%), Positives = 82/185 (44%), Gaps = 7/185 (3%)
Query: 10  DEQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVG-RA 68
           D    L E  GNV ++T+NRP   N I++ V   + + LE+ + D + + V++ G G ++
Sbjct: 7   DAPGALAERRGNVMVITINRPEARNAINAAVSIGVGDALEEAQHDPEVRAVVLTGAGDKS 66
Query: 69  FSAGGDLKMFYDGRNSKDSCLEVVYRMYWLCHHI-HTYKKTQVALAHGITMGGGASLMVP 127
           F AG DLK        +++     +  +    ++ H   K  +A  +G  +GGG  L + 
Sbjct: 67  FCAGADLKAIA----RRENLYHPDHPEWGFAGYVRHFIDKPTIAAVNGTALGGGTELALA 122
Query: 128 LKFSVVTEKTVFSTPEASIGFHTDCGFSF-IHSRLPGHLGEFLALTGARLNGKELVAAGL 186
               V  E+  F  PE   G     G  F I  +LP  +   L LTG  L+       GL
Sbjct: 123 SDLVVADERAQFGLPEVKRGLIAAAGGVFRIAEQLPRKVAMRLLLTGEPLSAAAARDWGL 182
Query: 187 ATHFV 191
               V
Sbjct: 183 INEVV 187

>pdb|2VSU|E Chain E, A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase-Lyase ( Hchl) With Acetyl-Coenzyme A And Vanillin Gives Insights Into Substrate Specificity And Mechanism Length = 276

Iteration: 1
 Score = 69.7 bits (169), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 46/182 (25%), Positives = 82/182 (45%), Gaps = 4/182 (2%)
Query: 22  VRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDG 81
           +  V LNRP + N +S  +   + + LE  E+D  A ++++ G G A++AG DLK ++  
Sbjct: 19  IAFVILNRPEKRNAMSPTLNREMIDVLETLEQDPAAGVLVLTGAGEAWTAGMDLKEYFRE 78
Query: 82  RNSKDSCLEVVYRM---YWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTV 138
            ++    L+   R     W    +  Y K  +A+ +G   GGG + +V    ++  ++  
Sbjct: 79  VDAGPEILQEKIRREASQWQWKLLRMYAKPTIAMVNGWCFGGGFAPLVACDLAICADEAT 138
Query: 139 FSTPEASIGFHTDCGFSFIHSRLPGHLGE-FLALTGARLNGKELVAAGLATHFVPSEKLP 197
           F   E + G       S   +   GH    +  +TG    G++    GL    VP  +L 
Sbjct: 139 FGLSEINYGIPPGNLVSKAMADTVGHRQSLYYIMTGKTFGGQKAAEMGLVNESVPLAQLR 198
Query: 198 EL 199
           E+
Sbjct: 199 EV 200

>pdb|2VSU|A Chain A, A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase-Lyase ( Hchl) With Acetyl-Coenzyme A And Vanillin Gives Insights Into Substrate Specificity And Mechanism. Length = 276

Iteration: 1
 Score = 69.7 bits (169), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 46/182 (25%), Positives = 82/182 (45%), Gaps = 4/182 (2%)
Query: 22  VRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDG 81
           +  V LNRP + N +S  +   + + LE  E+D  A ++++ G G A++AG DLK ++  
Sbjct: 19  IAFVILNRPEKRNAMSPTLNREMIDVLETLEQDPAAGVLVLTGAGEAWTAGMDLKEYFRE 78
Query: 82  RNSKDSCLEVVYRM---YWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTV 138
            ++    L+   R     W    +  Y K  +A+ +G   GGG + +V    ++  ++  
Sbjct: 79  VDAGPEILQEKIRREASQWQWKLLRMYAKPTIAMVNGWCFGGGFAPLVACDLAICADEAT 138
Query: 139 FSTPEASIGFHTDCGFSFIHSRLPGHLGE-FLALTGARLNGKELVAAGLATHFVPSEKLP 197
           F   E + G       S   +   GH    +  +TG    G++    GL    VP  +L 
Sbjct: 139 FGLSEINWGIPPGNLVSKAMADTVGHRQSLYYIMTGKTFGGQKAAEMGLVNESVPLAQLR 198
Query: 198 EL 199
           E+
Sbjct: 199 EV 200

>pdb|2VSU|F Chain F, A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase-Lyase ( Hchl) With Acetyl-Coenzyme A And Vanillin Gives Insights Into Substrate Specificity And Mechanism Length = 276

Iteration: 1
 Score = 69.7 bits (169), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 46/182 (25%), Positives = 82/182 (45%), Gaps = 4/182 (2%)
Query: 22  VRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDG 81
           +  V LNRP + N +S  +   + + LE  E+D  A ++++ G G A++AG DLK ++  
Sbjct: 19  IAFVILNRPERRNAMSPTLNREMIDVLETLEQDPAAGVLVLTGAGEAWTAGMDLKEYFRE 78
Query: 82  RNSKDSCLEVVYRM---YWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTV 138
            ++    L+   R     W    +  Y K  +A+ +G   GGG + +V    ++  ++  
Sbjct: 79  VDAGPEILQEKIRREASQWQWKLLRMYAKPTIAMVNGWCFGGGFAPLVACDLAICADEAT 138
Query: 139 FSTPEASIGFHTDCGFSFIHSRLPGHLGE-FLALTGARLNGKELVAAGLATHFVPSEKLP 197
           F   E + G       S   +   GH    +  +TG    G++    GL    VP  +L 
Sbjct: 139 FGLSEINWGIPPGNLVSKAMADTVGHRQSLYYIMTGKTFGGQKAAEMGLVNESVPLAQLR 198
Query: 198 EL 199
           E+
Sbjct: 199 EV 200

>pdb|2VSU|C Chain C, A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase-Lyase ( Hchl) With Acetyl-Coenzyme A And Vanillin Gives Insights Into Substrate Specificity And Mechanism Length = 275

Iteration: 1
 Score = 69.3 bits (168), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 46/182 (25%), Positives = 82/182 (45%), Gaps = 4/182 (2%)
Query: 22  VRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDG 81
           +  V LNRP + N +S  +   + + LE  E+D  A ++++ G G A++AG DLK ++  
Sbjct: 19  IAFVILNRPEKRNAMSPTLNREMIDVLETLEQDPAAGVLVLTGAGEAWTAGMDLKEYFRE 78
Query: 82  RNSKDSCLEVVYRM---YWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTV 138
            ++    L+   R     W    +  Y K  +A+ +G   GGG + +V    ++  ++  
Sbjct: 79  VDAGPEILQEKIRREASQWQWKLLRMYAKPTIAMVNGWCFGGGFAPLVACDLAICADEAT 138
Query: 139 FSTPEASIGFHTDCGFSFIHSRLPGHLGE-FLALTGARLNGKELVAAGLATHFVPSEKLP 197
           F   E + G       S   +   GH    +  +TG    G++    GL    VP  +L 
Sbjct: 139 FGLSEINWGIPPGNLVSKAMADTVGHRQSLYYIMTGKTFGGQKAAEMGLVNESVPLAQLR 198
Query: 198 EL 199
           E+
Sbjct: 199 EV 200

>pdb|3R9S|A Chain A, Structure Of A Carnitinyl-Coa Dehydratase From Mycobacterium Avium 104 Length = 267

Iteration: 1
 Score = 69.3 bits (168), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 51/185 (27%), Positives = 82/185 (44%), Gaps = 7/185 (3%)
Query: 10  DEQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVG-RA 68
           D    L E  GNV ++T+NRP   N +++ V   + + LE+ + D + + V++ G G ++
Sbjct: 7   DAPGALAERRGNVMVITINRPEARNAVNAAVSIGVGDALEEAQHDPEVRAVVLTGAGDKS 66
Query: 69  FSAGGDLKMFYDGRNSKDSCLEVVYRMYWLCHHI-HTYKKTQVALAHGITMGGGASLMVP 127
           F AG DLK        +++     +  +    ++ H   K  +A  +G  +GGG  L + 
Sbjct: 67  FCAGADLKAIA----RRENLYHPDHPEWGFAGYVRHFIDKPTIAAVNGTALGGGTELALA 122
Query: 128 LKFSVVTEKTVFSTPEASIGFHTDCGFSF-IHSRLPGHLGEFLALTGARLNGKELVAAGL 186
               V  E+  F  PE   G     G  F I  +LP  +   L LTG  L+       GL
Sbjct: 123 SDLVVADERAQFGLPEVKRGLIAAAGGVFRIAEQLPRKVAMRLLLTGEPLSAAAARDWGL 182
Query: 187 ATHFV 191
               V
Sbjct: 183 INEVV 187

>pdb|3TLF|A Chain A, Crystal Structure Of An Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Paratuberculosis Length = 274

Iteration: 1
 Score = 68.2 bits (165), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 54/212 (25%), Positives = 91/212 (42%), Gaps = 24/212 (11%)
Query: 20  GNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLK-MF 78
           G+   +TLNRP  LN +S  +++ L     + E DD+  L++V G GRAF +G D+K + 
Sbjct: 19  GHTATITLNRPDALNALSPHMITELRAAYHEAENDDRVWLLVVTGTGRAFCSGADVKEIP 78
Query: 79  YDGRNSKDSCLEVVYRMYWLCHH------------IHTYKKTQVALAHGITMGGGASLMV 126
            DG+        V+Y   +L  +              T  K  +   +GI  G G   + 
Sbjct: 79  EDGK--------VIYERPYLSTYDQWEAPQEGTPPFRTMAKPVLTAVNGICCGAGMDWVT 130
Query: 127 PLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHLGEFLALTGA--RLNGKELVAA 184
                + +E+  F  P  SIG         +   LP  +   +AL G   R++ +     
Sbjct: 131 TTDIVIASEQATFFDPHVSIGLVAGRELVRVSRVLPRSIALRMALMGKHERMSAQRAYEL 190
Query: 185 GLATHFVPSEKLPELEKRLIGL-NTGDEIAVK 215
           GL +  V  ++L E    +  + N+   +AV+
Sbjct: 191 GLISEIVEHDRLLERAHEIADIVNSNAPLAVR 222

>pdb|3RRV|A Chain A, Crystal Structure Of An Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Paratuberculosis Length = 276

Iteration: 1
 Score = 67.8 bits (164), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 48/175 (27%), Positives = 75/175 (42%), Gaps = 7/175 (4%)
Query: 20  GNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFY 79
           G +R++TLNRP  LN ++  +   LA   ++   D  A+  ++ G GRAFSAGGD     
Sbjct: 36  GALRIITLNRPDSLNSVNDDLHVGLARLWQRLTDDPTARAAVITGAGRAFSAGGDFGYLK 95
Query: 80  DGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVF 139
           +     D   + +     +   +   +   VA  +G  +G G SL+       + E    
Sbjct: 96  ELSADADLRAKTIRDGREIVLGMARCRIPVVAAVNGPAVGLGCSLVALSDIVYIAENAYL 155
Query: 140 STPEASIGFHTDCGFSFIHSRLPGHLGEFL----ALTGARLNGKELVAAGLATHF 190
           + P   +G     G        P H+   L    ALTG R++ +  V  GLA H 
Sbjct: 156 ADPHVQVGLVAADGGPLT---WPLHISLLLAKEYALTGTRISAQRAVELGLANHV 207

>pdb|2VX2|A Chain A, Crystal Structure Of Human Enoyl Coenzyme A Hydratase Domain-Containing Protein 3 (Echdc3) Length = 287

Iteration: 1
 Score = 65.9 bits (159), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 44/189 (23%), Positives = 89/189 (47%), Gaps = 3/189 (1%)
Query: 16  GEEIGNVRLVTLNRPRQLNVISSKVV-SLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGD 74
             ++  +R + L+ P++ N +S  ++ SL ++ L   + +D  K++I+   G  FS+G D
Sbjct: 37  ARQLDGIRNIVLSNPKKRNTLSLAMLKSLQSDILHDADSND-LKVIIISAEGPVFSSGHD 95
Query: 75  LKMFYDGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVT 134
           LK   +    +D   EV      +  HI  +    +A+ +G+    G  L+     +V +
Sbjct: 96  LKELTE-EQGRDYHAEVFQTCSKVMMHIRNHPVPVIAMVNGLATAAGCQLVASCDIAVAS 154
Query: 135 EKTVFSTPEASIGFHTDCGFSFIHSRLPGHLGEFLALTGARLNGKELVAAGLATHFVPSE 194
           +K+ F+TP  ++G         +   +P  +   +  TG  ++ +E +  GL +  VP  
Sbjct: 155 DKSSFATPGVNVGLFCSTPGVALARAVPRKVALEMLFTGEPISAQEALLHGLLSKVVPEA 214
Query: 195 KLPELEKRL 203
           +L E   R+
Sbjct: 215 ELQEETMRI 223

>pdb|3H81|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From Mycobacterium Tuberculosis Length = 278

Iteration: 1
 Score = 65.1 bits (157), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 47/186 (25%), Positives = 82/186 (44%), Gaps = 5/186 (2%)
Query: 12  QVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSA 71
           + +L E    V ++TLNRP+ LN ++S+V++ +     + + D     +I+ G  +AF+A
Sbjct: 25  ETILVERDQRVGIITLNRPQALNALNSQVMNEVTSAATELDDDPDIGAIIITGSAKAFAA 84
Query: 72  GGDLKMFYDGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFS 131
           G D+K   D   +        +   W    +   +   +A   G  +GGG  L +     
Sbjct: 85  GADIKEMAD--LTFADAFTADFFATW--GKLAAVRTPTIAAVAGYALGGGCELAMMCDVL 140
Query: 132 VVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHLGEF-LALTGARLNGKELVAAGLATHF 190
           +  +   F  PE  +G     G S   +R  G      L LTG  ++  E   +GL +  
Sbjct: 141 IAADTAKFGQPEIKLGVLPGMGGSQRLTRAIGKAKAMDLILTGRTMDAAEAERSGLVSRV 200
Query: 191 VPSEKL 196
           VP++ L
Sbjct: 201 VPADDL 206

>pdb|3PZK|A Chain A, Crystal Structure Of The Mycobacterium Tuberculosis Crotonase In Apo Form Length = 257

Iteration: 1
 Score = 65.1 bits (157), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 47/186 (25%), Positives = 82/186 (44%), Gaps = 5/186 (2%)
Query: 12  QVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSA 71
           + +L E    V ++TLNRP+ LN ++S+V++ +     + + D     +I+ G  +AF+A
Sbjct: 4   ETILVERDQRVGIITLNRPQALNALNSQVMNEVTSAATELDDDPDIGAIIITGSAKAFAA 63
Query: 72  GGDLKMFYDGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFS 131
           G D+K   D   +        +   W    +   +   +A   G  +GGG  L +     
Sbjct: 64  GADIKEMAD--LTFADAFTADFFATW--GKLAAVRTPTIAAVAGYALGGGCELAMMCDVL 119
Query: 132 VVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHLGEF-LALTGARLNGKELVAAGLATHF 190
           +  +   F  PE  +G     G S   +R  G      L LTG  ++  E   +GL +  
Sbjct: 120 IAADTAKFGQPEIKLGVLPGMGGSQRLTRAIGKAKAMDLILTGRTMDAAEAERSGLVSRV 179
Query: 191 VPSEKL 196
           VP++ L
Sbjct: 180 VPADDL 185

>pdb|3Q0J|A Chain A, Crystal Structure Of The Mycobacterium Tuberculosis Crotonase In Complex With The Inhibitor Acetoacetylcoa Length = 258

Iteration: 1
 Score = 64.7 bits (156), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 47/186 (25%), Positives = 82/186 (44%), Gaps = 5/186 (2%)
Query: 12  QVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSA 71
           + +L E    V ++TLNRP+ LN ++S+V++ +     + + D     +I+ G  +AF+A
Sbjct: 5   ETILVERDQRVGIITLNRPQALNALNSQVMNEVTSAATELDDDPDIGAIIITGSAKAFAA 64
Query: 72  GGDLKMFYDGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFS 131
           G D+K   D   +        +   W    +   +   +A   G  +GGG  L +     
Sbjct: 65  GADIKEMAD--LTFADAFTADFFATW--GKLAAVRTPTIAAVAGYALGGGCELAMMCDVL 120
Query: 132 VVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHLGEF-LALTGARLNGKELVAAGLATHF 190
           +  +   F  PE  +G     G S   +R  G      L LTG  ++  E   +GL +  
Sbjct: 121 IAADTAKFGQPEIKLGVLPGMGGSQRLTRAIGKAKAMDLILTGRTMDAAEAERSGLVSRV 180
Query: 191 VPSEKL 196
           VP++ L
Sbjct: 181 VPADDL 186

>pdb|3PEA|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From Bacillus Anthracis Str. 'ames Ancestor' Length = 261

Iteration: 1
 Score = 63.9 bits (154), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 62/241 (25%), Positives = 100/241 (41%), Gaps = 11/241 (4%)
Query: 21  NVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYD 80
           ++ + TLN     N  SS+V   + E +++ EKDD  ++V++ G GR FSAG D+K F  
Sbjct: 15  HIAVATLNHA-PANAXSSQVXHDVTELIDQVEKDDNIRVVVIHGEGRFFSAGADIKEFTS 73
Query: 81  GRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFS 140
              +K +  E+          +    K  +A  HG  +GGG            TE     
Sbjct: 74  VTEAKQAT-ELAQLGQVTFERVEKCSKPVIAAIHGAALGGGLEFAXSCHXRFATESAKLG 132
Query: 141 TPEASIGFHTDCGFSFIHSRLPGHLGEFLA----LTGARLNGKELVAAGLATHFVPSEKL 196
            PE ++G     GF+    RLP ++G+  A    LT   + G E +  GL       E  
Sbjct: 133 LPELTLGLIP--GFAGTQ-RLPRYVGKAKACEXXLTSTPITGAEALKWGLVNGVFAEETF 189
Query: 197 PELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDG--QSVLNKQSIIDECFSKETVAEIIKS 254
            +   ++     G   A   A+ E  +  +     + V  +  I  E F+ E   E + +
Sbjct: 190 LDDTLKVAKQIAGKSPATARAVLELLQTTKSSHYYEGVQREAQIFGEVFTSEDGREGVAA 249
Query: 255 F 255
           F
Sbjct: 250 F 250

>pdb|2VRE|A Chain A, Crystal Structure Of Human Peroxisomal Delta3,5, Delta2,4-Dienoyl Coa Isomerase Length = 296

Iteration: 1
 Score = 62.0 bits (149), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 50/189 (26%), Positives = 78/189 (41%), Gaps = 23/189 (12%)
Query: 25  VTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDL-KMFYDGRN 83
           V LNRP + N ++      + E   K  +D   + V++ G G+ F+AG DL  M  D   
Sbjct: 44  VQLNRPNKRNAMNKVFWREMVECFNKISRDADCRAVVISGAGKMFTAGIDLMDMASDILQ 103
Query: 84  SKDSCLEVVYRMYWLCHHIHT-YKKT----------QVALAHGITMGGGASLMVPLKFSV 132
            K    + V R+ W    I T Y++T           +A  HG  +GGG  L+       
Sbjct: 104 PKG---DDVARISWYLRDIITRYQETFNVIERCPKPVIAAVHGGCIGGGVDLVTACDIRY 160
Query: 133 VTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHLGEF-----LALTGARLNGKELVAAGLA 187
             +   F   E  +G   D G      RLP  +G       LA T  ++   E + +GL 
Sbjct: 161 CAQDAFFQVKEVDVGLAADVG---TLQRLPKVIGNQSLVNELAFTARKMMADEALGSGLV 217
Query: 188 THFVPSEKL 196
           +   P +++
Sbjct: 218 SRVFPDKEV 226

>pdb|1DCI|A Chain A, Dienoyl-Coa Isomerase Length = 275

Iteration: 1
 Score = 61.6 bits (148), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 52/189 (27%), Positives = 77/189 (40%), Gaps = 23/189 (12%)
Query: 25  VTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDL-KMFYDGRN 83
           V LNRP + N ++      L E  +K  KD   + V+V G G+ F++G DL  M  D   
Sbjct: 17  VQLNRPEKRNAMNRAFWRELVECFQKISKDSDCRAVVVSGAGKMFTSGIDLMDMASDILQ 76
Query: 84  SKDSCLEVVYRMYW-LCHHIHTYKKT----------QVALAHGITMGGGASLMVPLKFSV 132
                 + V R+ W L   I  Y+KT           +A  HG  +GGG  L+       
Sbjct: 77  PPG---DDVARIAWYLRDLISRYQKTFTVIEKCPKPVIAAIHGGCIGGGVDLISACDIRY 133
Query: 133 VTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHLGEF-----LALTGARLNGKELVAAGLA 187
            T+   F   E  +G   D G      RLP  +G       L  T  ++   E + +GL 
Sbjct: 134 CTQDAFFQVKEVDVGLAADVG---TLQRLPKVIGNRSLVNELTFTARKMMADEALDSGLV 190
Query: 188 THFVPSEKL 196
           +   P + +
Sbjct: 191 SRVFPDKDV 199

>pdb|3QXI|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase Echa1 From Mycobacterium Marinum Length = 265

Iteration: 1
 Score = 61.2 bits (147), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 50/177 (28%), Positives = 76/177 (42%), Gaps = 8/177 (4%)
Query: 11  EQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFS 70
           E  VL E+   + ++T+NRP+  N +++ V   LA+ +++ + D    + I+ G G +F 
Sbjct: 14  EPEVLVEQRDRILIITINRPKAKNSVNAAVSRALADAMDRLDADAGLSVGILTGAGGSFC 73
Query: 71  AGGDLKMFYDGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKF 130
           AG DLK F  G N       VV     L        K  +A   G  + GG  L +    
Sbjct: 74  AGMDLKAFARGEN-------VVVEGRGLGFTERPPAKPLIAAVEGYALAGGTELALATDL 126
Query: 131 SVVTEKTVFSTPEASIGFHTDCGFSFIHS-RLPGHLGEFLALTGARLNGKELVAAGL 186
            V    + F  PE   G     G       R+P  +   LALTG  L+ +   A G+
Sbjct: 127 IVAARDSAFGIPEVKRGLVAGGGGLLRLPERIPYAIAMELALTGDNLSAERAHALGM 183

>pdb|3QYR|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase Echa16_2 Mycobacterium Paratuberculosis Atcc Baa-968 K-10 Length = 253

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 52/190 (27%), Positives = 78/190 (41%), Gaps = 18/190 (9%)
Query: 11  EQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFS 70
           ++++L      VR +TLNRP+  N +S+ +       L   E DD   +VI+ G    F 
Sbjct: 7   DEILLSNTEERVRTLTLNRPQARNALSAALRDRFFGALADAETDDDVDVVIITGADPVFC 66
Query: 71  AGGDLKMFYDGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKF 130
           AG DLK         D           +        K  +   +G  + GG  L +    
Sbjct: 67  AGLDLKELGGSSALPD-----------ISPRWPALTKPVIGAINGAAVTGGLELALYCDI 115
Query: 131 SVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHLGEFLA----LTGARLNGKELVAAGL 186
            + +E   F+   A +G     G S    RLP  +G  LA    LTG  L+  + + AGL
Sbjct: 116 LIASENARFADTHARVGLLPTWGLSV---RLPQKVGIGLARRMSLTGDYLSAADALRAGL 172
Query: 187 ATHFVPSEKL 196
            T  VP ++L
Sbjct: 173 VTEVVPHDQL 182

>pdb|3P85|A Chain A, Crystal Structure Enoyl-Coa Hydratase From Mycobacterium Avium Length = 270

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 52/190 (27%), Positives = 78/190 (41%), Gaps = 18/190 (9%)
Query: 11  EQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFS 70
           ++++L      VR +TLNRP+  N +S+ +       L   E DD   +VI+ G    F 
Sbjct: 24  DEILLSNTEERVRTLTLNRPQARNALSAALRDRFFGALADAETDDDVDVVIITGADPVFC 83
Query: 71  AGGDLKMFYDGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKF 130
           AG DLK         D           +        K  +   +G  + GG  L +    
Sbjct: 84  AGLDLKELGGSSALPD-----------ISPRWPALTKPVIGAINGAAVTGGLELALYCDI 132
Query: 131 SVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHLGEFLA----LTGARLNGKELVAAGL 186
            + +E   F+   A +G     G S    RLP  +G  LA    LTG  L+  + + AGL
Sbjct: 133 LIASENARFADTHARVGLLPTWGLSV---RLPQKVGIGLARRMSLTGDYLSAADALRAGL 189
Query: 187 ATHFVPSEKL 196
            T  VP ++L
Sbjct: 190 VTEVVPHDQL 199

>pdb|3QMJ|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase Echa8_6 From Mycobacterium Marinum Length = 256

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 50/196 (25%), Positives = 86/196 (43%), Gaps = 4/196 (2%)
Query: 9   PDEQVVLGEEIGN-VRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGR 67
           P   V L  +  N VR +TLNRP  LN  +  +    A+ L     D Q  +V++ G GR
Sbjct: 2   PGSMVTLQIDDDNRVRTLTLNRPEALNAFNEALYDATAQALLDAADDPQVAVVLLTGSGR 61
Query: 68  AFSAGGDLKMFYDGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVP 127
            FSAG DL      R +  +  E  +    L   +  + K  +   +G+ +G GA+++  
Sbjct: 62  GFSAGTDLAEM-QARITDPNFSEGKFGFRGLIKALAGFPKPLICAVNGLGVGIGATILGY 120
Query: 128 LKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHL-GEFLALTGARLNGKELVAAGL 186
              + ++       P  S+G   +   S++  +L G     +L ++   ++ +E +  GL
Sbjct: 121 ADLAFMSSTARLKCPFTSLGVAPEAASSYLLPQLVGRQNAAWLLMSSEWIDAEEALRMGL 180
Query: 187 ATHFV-PSEKLPELEK 201
                 P E LPE  +
Sbjct: 181 VWRICSPEELLPEARR 196

>pdb|2EJ5|A Chain A, Crystal Structure Of Gk2038 Protein (Enoyl-Coa Hydratase Subunit Ii) From Geobacillus Kaustophilus Length = 257

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 63/214 (29%), Positives = 100/214 (46%), Gaps = 9/214 (4%)
Query: 20  GNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFY 79
           G V  +TLNRP QLN  + ++ + + + L++   D   + V++ G GRAF AG DL    
Sbjct: 11  GQVAWLTLNRPDQLNAFTEQMNAEVTKALKQAGADPNVRCVVITGAGRAFCAGEDLSGVT 70
Query: 80  DGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVF 139
           +  +  D        M    HH+   +K  VA  +G   G G SL +   F +++EK  F
Sbjct: 71  EEMDHGDVLRSRYAPMMKALHHL---EKPVVAAVNGAAAGAGMSLALACDFRLLSEKASF 127
Query: 140 STPEASIGFHTDCGFSFIHSRLPGHLGEF-LALTGARLNGKELVAAGLATHFVP----SE 194
           +     +G   D G  +   RL G      LA+ G ++  +E  A GLAT  +P     E
Sbjct: 128 APAFIHVGLVPDAGHLYYLPRLVGRAKALELAVLGEKVTAEEAAALGLATKVIPLSDWEE 187
Query: 195 KLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLD 228
           ++ +  +RL  + T     +K  + E SE+   D
Sbjct: 188 EVKQFAERLSAMPTKAIGLIKRLLRE-SEETTFD 220

>pdb|3TRR|A Chain A, Crystal Structure Of A Probable Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Abscessus Length = 256

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 48/179 (26%), Positives = 69/179 (38%), Gaps = 9/179 (5%)
Query: 14  VLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGG 73
           VL E+   V L+T+NRP   N ++  V   LA   ++ +      + I+ G G  F AG 
Sbjct: 9   VLIEQRDRVLLITINRPDARNAVNRAVSQGLAAAADQLDSSADLSVAIITGAGGNFCAGM 68
Query: 74  DLKMFYDGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVV 133
           DLK F  G        E V     L       +K  +A   G  + GG  L++     V 
Sbjct: 69  DLKAFVSG--------EAVLSERGLGFTNVPPRKPIIAAVEGFALAGGTELVLSCDLVVA 120
Query: 134 TEKTVFSTPEASIGFHTDC-GFSFIHSRLPGHLGEFLALTGARLNGKELVAAGLATHFV 191
                F  PE   G      G   + +R+P  +   LALTG     ++    G     V
Sbjct: 121 GRSAKFGIPEVKRGLVAGAGGLLRLPNRIPYQVAMELALTGESFTAEDAAKYGFINRLV 179

>pdb|4FZW|A Chain A, Crystal Structure Of The Paaf-paag Hydratase-isomerase Complex From E.coli Length = 258

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 76/177 (42%), Gaps = 11/177 (6%)
Query: 22  VRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDG 81
           V L+TLNRP   N +++ ++  L   LE    D    + ++ G  R F+AG DL    + 
Sbjct: 15  VLLLTLNRPAARNALNNALLMQLVNELEAAATDTSISVCVITGNARFFAAGADLNEMAE- 73
Query: 82  RNSKDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFST 141
              KD    +      L   +  + K  +A  +G  +G G  L +     V  E   F  
Sbjct: 74  ---KDLAATLNDTRPQLWARLQAFNKPLIAAVNGYALGAGCELALLCDVVVAGENARFGL 130
Query: 142 PEASIGFHTDCGFSFIHSRLPGHLGEFLA----LTGARLNGKELVAAGLATHFVPSE 194
           PE ++G     G +    RL   +G+ LA    L+G  +  ++   AGL +   PS+
Sbjct: 131 PEITLGIMPGAGGT---QRLIRSVGKSLASKMVLSGESITAQQAQQAGLVSDVFPSD 184

>pdb|3KQF|A Chain A, 1.8 Angstrom Resolution Crystal Structure Of Enoyl-Coa Hydratase From Bacillus Anthracis. Length = 265

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 58/213 (27%), Positives = 96/213 (45%), Gaps = 17/213 (7%)
Query: 25  VTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVG-RAFSAGGDLKMFYDGRN 83
           ++LNR RQ N +S  ++  L   L +  ++   ++VI+ G G +AF AG DLK    G N
Sbjct: 22  ISLNRERQANSLSLALLEELQNILTQINEEANTRVVILTGAGEKAFCAGADLKE-RAGXN 80
Query: 84  SKDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPE 143
            ++     V  +      +    +  +A  +GI +GGG  L +   F +  E       E
Sbjct: 81  -EEQVRHAVSXIRTTXEXVEQLPQPVIAAINGIALGGGTELSLACDFRIAAESASLGLTE 139
Query: 144 ASIGFHTDCGFSFIHSRLPGHLG----EFLALTGARLNGKELVAAGLATHFVP----SEK 195
            ++      G +    RLP  +G    + L  TG R++ +E    GL    VP     EK
Sbjct: 140 TTLAIIPGAGGT---QRLPRLIGVGRAKELIYTGRRISAQEAKEYGLVEFVVPVHLLEEK 196
Query: 196 LPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLD 228
             E+ +++    +   IAV+ A E  S  +Q+D
Sbjct: 197 AIEIAEKIA---SNGPIAVRLAKEAISNGIQVD 226

>pdb|4F47|A Chain A, The Structure Of Enoyl-Coa Hydratase Echa19 From Mycobacterium Marinum Length = 278

Iteration: 1
 Score = 59.3 bits (142), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 51/188 (27%), Positives = 81/188 (43%), Gaps = 9/188 (4%)
Query: 9   PDEQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRA 68
           PD  V   E+ G+  +VT+NRP + N +S +++ ++ E  ++ + D   +  I+ G G  
Sbjct: 20  PDALV---EQRGHTLIVTMNRPSRRNALSGEMMQIMVEAWDRVDNDPDIRCCILTGAGGY 76
Query: 69  FSAGGDLKMFYD---GRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLM 125
           F AG DLK       G + KD   +   R+  L       KK  +A   G  + GG  ++
Sbjct: 77  FCAGMDLKAATKKPPGDSFKDGSYD-PSRIDALLKG-RRLKKPLIAAVEGPAIAGGTEIL 134
Query: 126 VPLKFSVVTEKTVFSTPEASIGFHTDCGFSF-IHSRLPGHLGEFLALTGARLNGKELVAA 184
                 V  E   F   EA    +   G +  +  ++P  +   L LTG  +   E    
Sbjct: 135 QGTDIRVAAESAKFGISEAKWSLYPMGGSAVRLVRQIPYTVACDLLLTGRHITAAEAKEM 194
Query: 185 GLATHFVP 192
           GL  H VP
Sbjct: 195 GLVGHVVP 202

>pdb|3HIN|A Chain A, Crystal Structure Of Putative Enoyl-Coa Hydratase From Rhodopseudomonas Palustris Cga009 Length = 275

Iteration: 1
 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 56/223 (25%), Positives = 97/223 (43%), Gaps = 22/223 (9%)
Query: 6   VKNPDEQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGV 65
           + +P   VV  + +G V  + LNRP++ N ++  +++ L + L   +  DQ + V++ G+
Sbjct: 12  IADPSTLVV--DTVGPVLTIGLNRPKKRNALNDGLMAALKDCLT--DIPDQIRAVVIHGI 67
Query: 66  GRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYW--LCHHIHTYKKTQVALAHGITMGGGAS 123
           G  FSAG DL    +    +D+   +V+   W  +   I   +   +A   G  +GGG  
Sbjct: 68  GDHFSAGLDLSELRE----RDATEGLVHSQTWHRVFDKIQYCRVPVIAALKGAVIGGGLE 123
Query: 124 LMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHLG----EFLALTGARLNGK 179
           L       V      ++ PE S G     G S    RLP  +G      + LTG   +  
Sbjct: 124 LACAAHIRVAEASAYYALPEGSRGIFVGGGGSV---RLPRLIGVARMADMMLTGRVYSAA 180
Query: 180 ELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFS 222
           E V  G + + +  E     +K    L  G+ +A  + +  F+
Sbjct: 181 EGVVHGFSQYLI--ENGSAYDK---ALELGNRVAQNAPLTNFA 218

>pdb|2FBM|A Chain A, Acetyltransferase Domain Of Cdy1 Length = 291

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 46/180 (25%), Positives = 80/180 (44%), Gaps = 4/180 (2%)
Query: 13  VVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAG 72
           +V+ +E G  ++V   R  + N ++++V+  +   L     DD +KLV+    G  F  G
Sbjct: 25  IVVKKEDGFTQIVLSTRSTEKNALNTEVIKEIVNALNSAAADD-SKLVLFSAAGSVFCCG 83
Query: 73  GDLKMFYDG-RNSKDSC-LEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKF 130
            D   F    RN++++  LE+V  +    +    +KK  V   +G  +G GAS++     
Sbjct: 84  LDFGYFVKHLRNNRNTASLEMVDTIKNFVNTFIQFKKPIVVSVNGPAIGLGASILPLCDL 143
Query: 131 SVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHL-GEFLALTGARLNGKELVAAGLATH 189
               EK  F TP  + G   D   S    ++ G      + + G +L  +E  A GL + 
Sbjct: 144 VWANEKAWFQTPYTTFGQSPDGCSSITFPKMMGKASANEMLIAGRKLTAREACAKGLVSQ 203

>pdb|3P5M|A Chain A, Crystal Structure Of An Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Avium Length = 255

Iteration: 1
 Score = 56.6 bits (135), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 42/180 (23%), Positives = 75/180 (41%), Gaps = 9/180 (5%)
Query: 17  EEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLK 76
           E  G V  + L+RP +LN + + ++  L+ ++   E D+  + V++ G GRAF +GGDL 
Sbjct: 11  EHDGAVLRIRLDRPEKLNAVDTPMLEELSVHIRDAEADESVRAVLLTGAGRAFCSGGDLT 70
Query: 77  MFYDGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEK 136
                                +   I +  K  +A  HG  +G G SL +     V    
Sbjct: 71  --------GGDTAGAADAANRVVRAITSLPKPVIAGVHGAAVGFGCSLALACDLVVAAPA 122
Query: 137 TVFSTPEASIGFHTDCGFSFIHSRLPGHL-GEFLALTGARLNGKELVAAGLATHFVPSEK 195
           + F      +G   D G S +   L G      +A+T  +++       G+ +H   +++
Sbjct: 123 SYFQLAFTRVGLMPDGGASALLPLLIGRARTSRMAMTAEKISAATAFEWGMISHITSADE 182

>pdb|3PE8|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From Mycobacterium Smegmatis Length = 256

Iteration: 1
 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 59/217 (27%), Positives = 93/217 (42%), Gaps = 19/217 (8%)
Query: 10  DEQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAF 69
           D  V+L +    VR +TLNRP+  N +S+++ S     L   + DD   +VIV G    F
Sbjct: 7   DSPVLLVDTTDRVRTLTLNRPQSRNALSAELRSTFFRALSDAQNDDDVDVVIVTGADPVF 66
Query: 70  SAGGDLKMFYDGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLK 129
            AG DLK   D     D           +        K  +   +G  + GG  L +   
Sbjct: 67  CAGLDLKELGDTTELPD-----------ISPKWPDMTKPVIGAINGAAVTGGLELALYCD 115
Query: 130 FSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHLGEFLA----LTGARLNGKELVAAG 185
             + +E   F+   A +G     G S    RLP  +G  LA    LTG  L+ ++ + AG
Sbjct: 116 ILIASENAKFADTHARVGLMPTWGLSV---RLPQKVGVGLARRMSLTGDYLSAQDALRAG 172
Query: 186 LATHFVPSEKLPELEKRLIGLNTG-DEIAVKSAIEEF 221
           L T  V  + L    +R+     G ++ AV++ ++ +
Sbjct: 173 LVTEVVAHDDLLTAARRVAASIVGNNQKAVRALLDSY 209

>pdb|3ISA|A Chain A, Crystal Structure Of Putative Enoyl-Coa HydrataseISOMERASE FROM Bordetella Parapertussis Length = 254

Iteration: 1
 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 37/123 (30%), Positives = 59/123 (47%), Gaps = 3/123 (2%)
Query: 26  TLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSK 85
           TL+RP + N +S+++V  L + ++   ++ Q  L++  G GR FSAG D    Y+ ++  
Sbjct: 21  TLSRPEKRNALSAELVEALIDGVDAAHRE-QVPLLVFAGAGRNFSAGFDFTD-YETQSEG 78
Query: 86  DSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEAS 145
           D  L +V R+  L   +       +ALAHG   G G  L    K+   T +  F  P   
Sbjct: 79  DLLLRMV-RIEMLLQRVAGSPSLTLALAHGRNFGAGVDLFAACKWRYCTPEAGFRMPGLK 137
Query: 146 IGF 148
            G 
Sbjct: 138 FGL 140

>pdb|3MOY|A Chain A, Crystal Structure Of Probable Enoyl-Coa Hydratase From Mycob Smegmatis Length = 263

Iteration: 1
 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 52/210 (24%), Positives = 88/210 (41%), Gaps = 9/210 (4%)
Query: 19  IGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMF 78
           +  V L+ L+RP  LN ++  + + + +    ++ D +   ++V G  RAF+AG D+   
Sbjct: 17  VAGVGLIRLDRPDALNALNQTLEAEVLDAARDFDADLEIGAIVVTGSERAFAAGADIAEM 76
Query: 79  YDGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTV 138
                +     E      W    +   +K  VA   G  +GGG  L +     +  +   
Sbjct: 77  VT--LTPHQARERNLLSGW--DSLTQVRKPIVAAVAGYALGGGCELAMLCDLVIAADTAR 132
Query: 139 FSTPEASIGFHTDCGFSFIHSRLPGHLGEF-LALTGARLNGKELVAAGLATHFVPSEKLP 197
           F  PE ++G     G +   +R  G      L LTG  L  +E    GL +  VP+  L 
Sbjct: 133 FGQPEITLGILPGLGGTQRLTRAVGKAKAMDLCLTGRSLTAEEAERVGLVSRIVPAADLL 192
Query: 198 E----LEKRLIGLNTGDEIAVKSAIEEFSE 223
           +    + +R+  ++     AVK AI E  E
Sbjct: 193 DEALAVAQRIARMSRPAGRAVKDAINEAFE 222

>pdb|2IEX|A Chain A, Crystal Structure Of Dihydroxynapthoic Acid Synthetase (Gk2873) From Geobacillus Kaustophilus Hta426 Length = 272

Iteration: 1
 Score = 55.5 bits (132), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 51/198 (25%), Positives = 86/198 (43%), Gaps = 9/198 (4%)
Query: 6   VKNPDEQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGV 65
           VK  D + ++ E    +  +T+NRP   N    K V+ + +   K   D    ++I+ G 
Sbjct: 6   VKQYDYEDIIYETYNGIAKITINRPEVHNAFRPKTVNEMIDAFTKARDDSNIGVIILTGA 65
Query: 66  -GRAFSAGGDLKMF-YDGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGAS 123
            G+AF +GGD K+  + G   +D    +   +  L   I    K  +A+  G  +GGG  
Sbjct: 66  GGKAFCSGGDQKVRGHGGYVGEDEIPRL--NVLDLQRLIRVIPKPVIAMVAGYAIGGGHV 123
Query: 124 LMVPLKFSVVTEKTVFSTPEASIG-FHTDCGFSFIHSRLPGH--LGEFLALTGARLNGKE 180
           L V    ++  +  +F      +G F    G  ++ +R+ GH    E   L   +   +E
Sbjct: 124 LHVVCDLTIAADNAIFGQTGPKVGSFDGGYGAGYL-ARIVGHKKAREIWYLC-RQYTAQE 181
Query: 181 LVAAGLATHFVPSEKLPE 198
            +  GL    VP E+L E
Sbjct: 182 ALEMGLVNKVVPLEQLEE 199

>pdb|2FW2|A Chain A, Catalytic Domain Of Cdy Length = 260

Iteration: 1
 Score = 55.1 bits (131), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 46/180 (25%), Positives = 79/180 (43%), Gaps = 4/180 (2%)
Query: 13  VVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAG 72
           +V+ +E G  ++V   R  + N ++++V+  +   L     DD +KLV+    G  F  G
Sbjct: 6   IVVKKEDGFTQIVLSTRSTEKNALNTEVIKEMVNALNSAAADD-SKLVLFSAAGSVFCCG 64
Query: 73  GDLKMFYDG-RNSKDSC-LEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKF 130
            D   F    RN +++  LE+V  +    +    +KK  V   +G  +G GAS++     
Sbjct: 65  LDFGYFVRHLRNDRNTASLEMVDTIKNFVNTFIQFKKPIVVSVNGPAIGLGASILPLCDL 124
Query: 131 SVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHL-GEFLALTGARLNGKELVAAGLATH 189
               EK  F TP  + G   D   S    ++ G      + + G +L  +E  A GL + 
Sbjct: 125 VWANEKAWFQTPYTTFGQSPDGCSSITFPKMMGKASANEMLIAGRKLTAREACAKGLVSQ 184

>pdb|4ELS|A Chain A, Structure Of E. Coli. 1,4-Dihydroxy-2- Naphthoyl Coenzyme A Synthases (Menb) In Complex With Bicarbonate Length = 285

Iteration: 1
 Score = 54.7 bits (130), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 45/182 (24%), Positives = 76/182 (41%), Gaps = 5/182 (2%)
Query: 25  VTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVG-RAFSAGGDLKMFYDGRN 83
           +T+NRP+  N      V  + + L     DD   ++I+ G G +AF +GGD K+  D   
Sbjct: 37  ITINRPQVRNAFRPLTVKEMIQALADARYDDNIGVIILTGAGDKAFCSGGDQKVRGDYGG 96
Query: 84  SKDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPE 143
            KD        +      I T  K  VA+  G ++GGG  L +    ++  +  +F    
Sbjct: 97  YKDDSGVHHLNVLDFQRQIRTCPKPVVAMVAGYSIGGGHVLHMMCDLTIAADNAIFGQTG 156
Query: 144 ASIG-FHTDCGFSFIHSRLPGHLGEFLALTGARLNGKELVAAGLATHFVPSEKLPELEKR 202
             +G F    G S++   +       +     + + K+ +  GL    VP   L +LEK 
Sbjct: 157 PKVGSFDGGWGASYMARIVGQKKAREIWFLCRQYDAKQALDMGLVNTVVP---LADLEKE 213
Query: 203 LI 204
            +
Sbjct: 214 TV 215

>pdb|4FZW|C Chain C, Crystal Structure Of The Paaf-paag Hydratase-isomerase Complex From E.coli Length = 274

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 51/189 (26%), Positives = 88/189 (46%), Gaps = 11/189 (5%)
Query: 22  VRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDG 81
           V  +TLNRP +LN  + ++ + LAE L++ E+DD  + +++ G GR F AG DL    + 
Sbjct: 25  VMTLTLNRPERLNSFNDEMHAQLAECLKQVERDDTIRCLLLTGAGRGFCAGQDL----ND 80
Query: 82  RN------SKDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTE 135
           RN      + D  + V      L   +    K  +   +G+  G GA+L +     +   
Sbjct: 81  RNVDPTGPAPDLGMSVERFYNPLVRRLAKLPKPVICAVNGVAAGAGATLALGGDIVIAAR 140
Query: 136 KTVFSTPEASIGFHTDCGFSFIHSRLPGHLGEF-LALTGARLNGKELVAAGLATHFVPSE 194
              F    + +G   DCG +++  R+ G      LAL G +L+ ++    G+    V  E
Sbjct: 141 SAKFVMAFSKLGLIPDCGGTWLLPRVAGRARAMGLALLGNQLSAEQAHEWGMIWQVVDDE 200
Query: 195 KLPELEKRL 203
            L +  ++L
Sbjct: 201 TLADTAQQL 209

>pdb|3MYB|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase Mycobacterium Smegm Length = 286

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 56/229 (24%), Positives = 93/229 (40%), Gaps = 7/229 (3%)
Query: 17  EEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLK 76
           +E G V L TLNRP+  N +S  +++ L E      +D+  + V++   G+AF AG DLK
Sbjct: 32  DERGVVTL-TLNRPQAFNALSEAMLAALGEAFGTLAEDESVRAVVLAASGKAFCAGHDLK 90
Query: 77  MFYDGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEK 136
                  S++   ++  R   +   I       +A  HGI    G  L+     +V T  
Sbjct: 91  EMR-AEPSREYYEKLFARCTDVMLAIQRLPAPVIARVHGIATAAGCQLVAMCDLAVATRD 149
Query: 137 TVFSTPEASIG-FHTDCGFSFIHSRLPGHLGEF-LALTGARLNGKELVAAGLATHFVPSE 194
             F+    ++G F +  G +   SR  G    F + +TG  ++  +    GL    V  +
Sbjct: 150 ARFAVSGINVGLFCSTPGVAL--SRNVGRKAAFEMLVTGEFVSADDAKGLGLVNRVVAPK 207
Query: 195 KL-PELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDEC 242
            L  E+E  +  +      AV      F   ++ D +S          C
Sbjct: 208 ALDDEIEAMVSKIVAKPRAAVAMGKALFYRQIETDIESAYADAGTTMAC 256

>pdb|3T88|A Chain A, Crystal Structure Of Escherichia Coli Menb In Complex With Substrate Analogue, Osb-Ncoa Length = 289

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 45/182 (24%), Positives = 76/182 (41%), Gaps = 5/182 (2%)
Query: 25  VTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVG-RAFSAGGDLKMFYDGRN 83
           +T+NRP+  N      V  + + L     DD   ++I+ G G +AF +GGD K+  D   
Sbjct: 41  ITINRPQVRNAFRPLTVKEMIQALADARYDDNIGVIILTGAGDKAFCSGGDQKVRGDYGG 100
Query: 84  SKDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPE 143
            KD        +      I T  K  VA+  G ++GGG  L +    ++  +  +F    
Sbjct: 101 YKDDSGVHHLNVLDFQRQIRTCPKPVVAMVAGYSIGGGHVLHMMCDLTIAADNAIFGQTG 160
Query: 144 ASIG-FHTDCGFSFIHSRLPGHLGEFLALTGARLNGKELVAAGLATHFVPSEKLPELEKR 202
             +G F    G S++   +       +     + + K+ +  GL    VP   L +LEK 
Sbjct: 161 PKVGSFDGGWGASYMARIVGQKKAREIWFLCRQYDAKQALDMGLVNTVVP---LADLEKE 217
Query: 203 LI 204
            +
Sbjct: 218 TV 219

>pdb|3SLL|A Chain A, Crystal Structure Of A Probable Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Abscessus Length = 290

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/186 (25%), Positives = 83/186 (44%), Gaps = 11/186 (5%)
Query: 22  VRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLK----M 77
           + LVTLNRP ++N ++  V+    + L     D+  + V++ G G+ F +G D K    +
Sbjct: 34  IALVTLNRPERMNAMAFDVMLPFKQMLVDISHDNDVRAVVITGAGKGFCSGADQKSAGPI 93
Query: 78  FYDGRNSKDSCLEVVYRMYWLCHHIHTYKKTQ---VALAHGITMGGGASLMVPLKFSVVT 134
            + G  ++ +    +  M  L   I T ++     +A  +G  +GGG  L +     V +
Sbjct: 94  PHIGGLTQPTI--ALRSMELLDEVILTLRRMHQPVIAAINGAAIGGGLCLALACDVRVAS 151
Query: 135 EKTVFSTPEASIGF-HTDCGFSFIHSRLPG-HLGEFLALTGARLNGKELVAAGLATHFVP 192
           +   F     + G   ++ G S++  R  G      + LTG  ++  E    GL +  V 
Sbjct: 152 QDAYFRAAGINNGLTASELGLSYLLPRAIGTSRASDIMLTGRDVDADEAERIGLVSRKVA 211
Query: 193 SEKLPE 198
           SE L E
Sbjct: 212 SESLLE 217

>pdb|2F6Q|A Chain A, The Crystal Structure Of Human Peroxisomal Delta3, Delta2 Enoyl Coa Isomerase (Peci) Length = 280

Iteration: 1
 Score = 52.8 bits (125), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 47/188 (25%), Positives = 83/188 (44%), Gaps = 11/188 (5%)
Query: 11  EQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFS 70
           E +V+  E G +  +  NRP++ N I+++    +   L+   KDD   + ++ G G  +S
Sbjct: 26  ETLVVTSEDG-ITKIXFNRPKKKNAINTEXYHEIXRALKAASKDDSI-ITVLTGNGDYYS 83
Query: 71  AGGDLKMFYD----GRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMV 126
           +G DL  F D    G   K     V+ R +  C     + K  +A+ +G  +G   +L+ 
Sbjct: 84  SGNDLTNFTDIPPGGVEEKAKNNAVLLREFVGC--FIDFPKPLIAVVNGPAVGISVTLLG 141
Query: 127 PLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRL--PGHLGEFLALTGARLNGKELVAA 184
                  +++  F TP + +G   +   S+   ++  P    E L + G +L   E  A 
Sbjct: 142 LFDAVYASDRATFHTPFSHLGQSPEGCSSYTFPKIXSPAKATEXL-IFGKKLTAGEACAQ 200
Query: 185 GLATHFVP 192
           GL T   P
Sbjct: 201 GLVTEVFP 208

>pdb|1JXZ|A Chain A, Structure Of The H90q Mutant Of 4-Chlorobenzoyl-Coenzyme A Dehalogenase Complexed With 4-Hydroxybenzoyl-Coenzyme A (Product) Length = 269

Iteration: 1
 Score = 52.4 bits (124), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 46/184 (25%), Positives = 79/184 (42%), Gaps = 14/184 (7%)
Query: 25  VTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNS 84
           +T+  PR  N +S K +  + + L + E+DD    V++ G   AF AG     FY     
Sbjct: 16  ITIKLPRHRNALSVKAMQEVTDALNRAEEDDSVGAVMITGAEDAFCAG-----FYLREIP 70
Query: 85  KDSCLEVV---YR---MYW--LCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEK 136
            D  +  V   +R   ++W  + H I   K+  +A  +G+  GGG  + +    ++  + 
Sbjct: 71  LDKGVAGVRDHFRIAALWWQQMIHKIIRVKRPVLAAINGVAAGGGLGISLASDMAICADS 130
Query: 137 TVFSTPEASIGFHTDCGFSFIHSRLPGHLGEF-LALTGARLNGKELVAAGLATHFVPSEK 195
             F     +IG   D   S+  +R+ G      L LT   L  +E    GL +   P ++
Sbjct: 131 AKFVCAWHTIGIGNDTATSYSLARIVGMRRAMELMLTNRTLYPEEAKDWGLVSRVYPKDE 190
Query: 196 LPEL 199
             E+
Sbjct: 191 FREV 194

>pdb|1NZY|A Chain A, 4-Chlorobenzoyl Coenzyme A Dehalogenase From Pseudomonas Sp. Strain Cbs-3 Length = 269

Iteration: 1
 Score = 52.0 bits (123), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 46/184 (25%), Positives = 79/184 (42%), Gaps = 14/184 (7%)
Query: 25  VTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNS 84
           +T+  PR  N +S K +  + + L + E+DD    V++ G   AF AG     FY     
Sbjct: 16  ITIKLPRHRNALSVKAMQEVTDALNRAEEDDSVGAVMITGAEDAFCAG-----FYLREIP 70
Query: 85  KDSCLEVV---YR---MYW--LCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEK 136
            D  +  V   +R   ++W  + H I   K+  +A  +G+  GGG  + +    ++  + 
Sbjct: 71  LDKGVAGVRDHFRIAALWWHQMIHKIIRVKRPVLAAINGVAAGGGLGISLASDMAICADS 130
Query: 137 TVFSTPEASIGFHTDCGFSFIHSRLPGHLGEF-LALTGARLNGKELVAAGLATHFVPSEK 195
             F     +IG   D   S+  +R+ G      L LT   L  +E    GL +   P ++
Sbjct: 131 AKFVCAWHTIGIGNDTATSYSLARIVGMRRAMELMLTNRTLYPEEAKDWGLVSRVYPKDE 190
Query: 196 LPEL 199
             E+
Sbjct: 191 FREV 194

>pdb|3QKA|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase Echa5 From Mycobacterium Marinum Length = 261

Iteration: 1
 Score = 52.0 bits (123), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 47/180 (26%), Positives = 72/180 (40%), Gaps = 9/180 (5%)
Query: 17  EEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLK 76
           E  G V  V +NRP+  N ++    + L     ++++D+ A + ++ G G  F AG DLK
Sbjct: 13  ERNGPVTTVIINRPQARNAVNGPTAAALYSAFAEFDRDESASVAVLCGNGGTFCAGADLK 72
Query: 77  MFYDGRNSKDSCLEVVYRMYW--LCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVT 134
            F     +       V+R     +        K  +A   G  + GG  L +     V  
Sbjct: 73  AFGTAEAN------AVHRTGPGPMGPSRMMLSKPVIAAVSGYAVAGGLELALWCDLRVAE 126
Query: 135 EKTVFSTPEASIGFHTDCGFSFIHSRLPGHLGEF-LALTGARLNGKELVAAGLATHFVPS 193
           +  VF       G     G +    RL GH     + LTG  +   E +A GLA   VP+
Sbjct: 127 QDAVFGVFCRRWGVPLIDGGTVRLPRLIGHSRAMDMILTGRAVQADEALAIGLANRVVPN 186

>pdb|3FDU|A Chain A, Crystal Structure Of A Putative Enoyl-Coa HydrataseISOMERASE FROM Acinetobacter Baumannii Length = 266

Iteration: 1
 Score = 52.0 bits (123), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 36/173 (20%), Positives = 74/173 (42%), Gaps = 1/173 (0%)
Query: 20  GNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFY 79
           G V  + +NRP   N +  ++   +A+ L++ +++   ++V+++G    F+AG D+K F 
Sbjct: 13  GGVLTLAINRPEAKNALYGELYLWIAKALDEADQNKDVRVVVLRGAEHDFTAGNDMKDFM 72
Query: 80  DGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVF 139
               + ++        + L        K  +    G+ +G G ++++           +F
Sbjct: 73  GFVQNPNAGPAGQVPPFVLLKSAARLSKPLIIAVKGVAIGIGVTILLQADLVFADNTALF 132
Query: 140 STPEASIGFHTDCGFSFIHSRLPG-HLGEFLALTGARLNGKELVAAGLATHFV 191
             P  S+G   + G S +  +  G H    L  T  + N +  + AGL    V
Sbjct: 133 QIPFVSLGLSPEGGASQLLVKQAGYHKAAELLFTAKKFNAETALQAGLVNEIV 185

>pdb|1NZY|B Chain B, 4-Chlorobenzoyl Coenzyme A Dehalogenase From Pseudomonas Sp. Strain Cbs-3 Length = 269

Iteration: 1
 Score = 51.6 bits (122), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 46/184 (25%), Positives = 79/184 (42%), Gaps = 14/184 (7%)
Query: 25  VTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNS 84
           +T+  PR  N +S K +  + + L + E+DD    V++ G   AF AG     FY     
Sbjct: 16  ITIKLPRHRNALSVKAMQEVTDALNRAEEDDSVGAVMITGAEDAFCAG-----FYLREIP 70
Query: 85  KDSCLEVV---YR---MYW--LCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEK 136
            D  +  V   +R   ++W  + H I   K+  +A  +G+  GGG  + +    ++  + 
Sbjct: 71  LDKGVAGVRDHFRIAALWWHQMIHKIIRVKRPVLAAINGVAAGGGLGISLASDMAICADS 130
Query: 137 TVFSTPEASIGFHTDCGFSFIHSRLPGHLGEF-LALTGARLNGKELVAAGLATHFVPSEK 195
             F     +IG   D   S+  +R+ G      L LT   L  +E    GL +   P ++
Sbjct: 131 AKFVCAWHTIGIGNDTATSYSLARIVGMRRAMELMLTDRTLYPEEAKDWGLVSRVYPKDE 190
Query: 196 LPEL 199
             E+
Sbjct: 191 FREV 194

>pdb|3L3S|A Chain A, Crystal Structure Of An Enoyl-Coa HydrotaseISOMERASE FAMILY Protein From Silicibacter Pomeroyi Length = 263

Iteration: 1
 Score = 51.6 bits (122), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 58/223 (26%), Positives = 91/223 (40%), Gaps = 13/223 (5%)
Query: 14  VLGEEIG-NVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAG 72
           +LGE +   V  +TL R    + +S   ++ L + L +   DD   ++++ G GR F AG
Sbjct: 8   LLGEVLSEGVLTLTLGRA-PAHPLSRAXIAALHDALRRAXGDDHVHVLVIHGPGRIFCAG 66
Query: 73  GDLKMFYDGRNSKDSCLEVVYRMYWLCHHI-----HTYKKTQVALAHGITMGGGASLMVP 127
            DLK     R   D     V  ++  C  +     H  K T +AL  GI    G  L   
Sbjct: 67  HDLKEIGRHRADPDEGRAFVTDLFEACSALXLDLAHCPKPT-IALVEGIATAAGLQLXAA 125
Query: 128 LKFSVVTEKTVFSTPEA-SIGFHTDCGFSFIHSRLPGHLGEF-LALTGARLNGKELVAAG 185
              +  +    F  P   + GF T    +   SR+ G       ALTGA  +    +AAG
Sbjct: 126 CDLAYASPAARFCLPGVQNGGFXTTPAVAV--SRVIGRRAVTEXALTGATYDADWALAAG 183
Query: 186 LATHFVPSEKLPELEKRLIG-LNTGDEIAVKSAIEEFSEDVQL 227
           L    +P   L      L G L   ++  ++  +E  +  ++L
Sbjct: 184 LINRILPEAALATHVADLAGALAARNQAPLRRGLETLNRHLEL 226

>pdb|3T3W|A Chain A, Crystal Structure Of Probable Enoyl-Coa Hydratase From Mycobacterium Thermoresistibile Length = 279

Iteration: 1
 Score = 51.6 bits (122), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 46/193 (23%), Positives = 75/193 (38%), Gaps = 22/193 (11%)
Query: 25  VTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNS 84
           +TLNRP   N  + +++  L     +  +D+   +++++  G+ FSAG DL+    G   
Sbjct: 33  ITLNRPEAANAQNPELLDELDAAWTRAAEDNDVSVIVLRANGKHFSAGHDLRG--GGPVP 90
Query: 85  KDSCLEVVY-----RMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVF 139
               LE +Y     R            K  +A   G  + GG  L  P    +  E  +F
Sbjct: 91  DKLTLEFIYAHESRRYLEYSLRWRNVPKPSIAAVQGRCISGGLLLCWPCDLIIAAEDALF 150
Query: 140 STPEASIGFHTDCGFSFIHSRLPGHLGEF-------LALTGARLNGKELVAAGLATHFVP 192
           S P   +    D G    H    GH  E        +  TG  +  +E+   G+    VP
Sbjct: 151 SDPVVLM----DIGGVEYH----GHTWELGPRKAKEILFTGRAMTAEEVAQTGMVNRVVP 202
Query: 193 SEKLPELEKRLIG 205
            ++L    + L G
Sbjct: 203 RDRLDAETRALAG 215

>pdb|2UZF|A Chain A, Crystal Structure Of Staphylococcus Aureus 1,4-Dihydroxy-2- Naphthoyl Coa Synthase (Menb) In Complex With Acetoacetyl Coa Length = 273

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/179 (25%), Positives = 78/179 (43%), Gaps = 9/179 (5%)
Query: 25  VTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGR-AFSAGGDLKMF-YDGR 82
           VT+NRP   N  + K V+ + +   +   D    ++++ G G  AF +GGD K   + G 
Sbjct: 26  VTINRPEVRNAFTPKTVAEMIDAFSRARDDQNVSVIVLTGEGDLAFCSGGDQKKRGHGGY 85
Query: 83  NSKDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTP 142
             +D    +   +  L   I    K  +A+  G  +GGG  L V    ++  +  +F   
Sbjct: 86  VGEDQIPRL--NVLDLQRLIRIIPKPVIAMVKGYAVGGGNVLNVVCDLTIAADNAIFGQT 143
Query: 143 EASIG-FHTDCGFSFIHSRLPGH--LGEFLALTGARLNGKELVAAGLATHFVPSEKLPE 198
              +G F    G  ++ +R+ GH    E   L   + N +E +  GL    VP EK+ +
Sbjct: 144 GPKVGSFDAGYGSGYL-ARIVGHKKAREIWYLC-RQYNAQEALDMGLVNTVVPLEKVED 200

>pdb|3H02|A Chain A, 2.15 Angstrom Resolution Crystal Structure Of Naphthoate Synthase From Salmonella Typhimurium. Length = 288

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/182 (24%), Positives = 72/182 (39%), Gaps = 5/182 (2%)
Query: 25  VTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVG-RAFSAGGDLKMFYDGRN 83
           +T+NRP+  N      V    + L     DD   ++I+ G G +AF AGGD K+  D   
Sbjct: 40  ITINRPQVRNAFRPLTVKEXIQALADARYDDNVGVIILTGEGDKAFCAGGDQKVRGDYGG 99
Query: 84  SKDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPE 143
            +D        +      I T  K  VA   G ++GGG  L      ++  E  +F    
Sbjct: 100 YQDDSGVHHLNVLDFQRQIRTCPKPVVAXVAGYSIGGGHVLHXXCDLTIAAENAIFGQTG 159
Query: 144 ASIG-FHTDCGFSFIHSRLPGHLGEFLALTGARLNGKELVAAGLATHFVPSEKLPELEKR 202
             +G F    G S+    +       +     + + ++ +  GL    VP   L +LEK 
Sbjct: 160 PKVGSFDGGWGASYXARIVGQKKAREIWFLCRQYDAQQALDXGLVNTVVP---LADLEKE 216
Query: 203 LI 204
            +
Sbjct: 217 TV 218

>pdb|3QXZ|A Chain A, Crystal Structure Of A Probable Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Abscessus Length = 265

Iteration: 1
 Score = 48.1 bits (113), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 54/229 (23%), Positives = 97/229 (42%), Gaps = 24/229 (10%)
Query: 15  LGEEIGN-VRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGG 73
           L EEI + V ++TL+ P   N  + ++   L    ++ + D   +++++ G   AF +G 
Sbjct: 9   LHEEIRDGVAVLTLHGPSTRNSFTVELGRQLGAAYQRLDDDPAVRVIVLTGAPPAFCSGA 68
Query: 74  DL----KMFYDGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLK 129
            +    + F   RN   S   V    + L       +   +A  +G  +G G +L +   
Sbjct: 69  QISAAAETFAAPRNPDFSASPVQPAAFEL-------RTPVIAAVNGHAIGIGMTLALHAD 121
Query: 130 FSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHLGEFLA----LTGARLNGKELVAAG 185
             ++ E+  ++ P+   G   D   +  H  LP  +G  +A    LTGA  + +  V  G
Sbjct: 122 IRILAEEGRYAIPQVRFGVAPD---ALAHWTLPRLVGTAVAAELLLTGASFSAQRAVETG 178
Query: 186 LATHFVPSEKLPELEKRL---IGLNTGDEIAVKSAIEEFSEDVQLDGQS 231
           LA   +P+ K+     R+   I  N   E A  +  +    D Q+ G S
Sbjct: 179 LANRCLPAGKVLGAALRMAHDIATNVAPESAALT--KRLLWDAQMTGMS 225

>pdb|3OME|A Chain A, Crystal Structure Of A Probable Enoyl-Coa Hydratase From Mycobacterium Smegmatis Length = 282

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/138 (24%), Positives = 61/138 (44%), Gaps = 17/138 (12%)
Query: 21  NVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYD 80
           ++  +TLNRP   N  + +++  L     +  +D++ K++I++  G+ FSAG DL+    
Sbjct: 32  SIATITLNRPEAANAQNPELLDELDAAWTRAAEDNEVKVIILRANGKHFSAGHDLRG--G 89
Query: 81  GRNSKDSCLEVV----------YRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKF 130
           G   +   LE +          Y + W         K  +A   G  + GG  L  P   
Sbjct: 90  GEVPEKISLEFIIQHEARRYLDYTLRW-----RNVPKPSIAAVQGRCISGGLLLCWPCDL 144
Query: 131 SVVTEKTVFSTPEASIGF 148
            + ++  +FS P A +G 
Sbjct: 145 ILASDDALFSDPVALMGI 162

>pdb|2GTR|A Chain A, Human Chromodomain Y-Like Protein Length = 261

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/211 (21%), Positives = 88/211 (41%), Gaps = 9/211 (4%)
Query: 13  VVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAG 72
           +V+ ++ G   ++   +  + N ++ +V+  +   L     DD +KLV++  VG  F  G
Sbjct: 7   IVVRKQDGFTHILLSTKSSENNSLNPEVMREVQSALSTAAADD-SKLVLLSAVGSVFCCG 65
Query: 73  GDLKMFY----DGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPL 128
            D   F     D R  + + +    R +   +    +KK  +   +G  +G GAS++   
Sbjct: 66  LDFIYFIRRLTDDRKRESTKMAEAIRNF--VNTFIQFKKPIIVAVNGPAIGLGASILPLC 123
Query: 129 KFSVVTEKTVFSTPEASIGFHTD-CGFSFIHSRLPGHLGEFLALTGARLNGKELVAAGLA 187
                 EK  F TP  + G   D C        + G     + L+G +L  +E    GL 
Sbjct: 124 DVVWANEKAWFQTPYTTFGQSPDGCSTVMFPKIMGGASANEMLLSGRKLTAQEACGKGLV 183
Query: 188 TH-FVPSEKLPELEKRLIGLNTGDEIAVKSA 217
           +  F P     E+  R+  L + + + ++ +
Sbjct: 184 SQVFWPGTFTQEVMVRIKELASCNPVVLEES 214

>pdb|2A7K|A Chain A, Carboxymethylproline Synthase (carb) From Pectobacterium Carotovora, Apo Enzyme Length = 250

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 59/142 (41%), Gaps = 2/142 (1%)
Query: 13  VVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVK-GVGRAFSA 71
           +V  E    VR++TL+ P + N  S  + + + + L +   DD  + V+V  G  R+FSA
Sbjct: 1   MVFEENSDEVRVITLDHPNKHNPFSRTLETSVKDALARANADDSVRAVVVYGGAERSFSA 60
Query: 72  GGDLKMFYDGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFS 131
           GGD         S+D   E + R+  L   +    K  +A   G  +G G    +     
Sbjct: 61  GGDFNEVKQLSRSED-IEEWIDRVIDLYQAVLNVNKPTIAAVDGYAIGMGFQFALMFDQR 119
Query: 132 VVTEKTVFSTPEASIGFHTDCG 153
           ++     F  PE   G     G
Sbjct: 120 LMASTANFVMPELKHGIGCSVG 141

>pdb|3I47|A Chain A, Crystal Structure Of Putative Enoyl Coa HydrataseISOMERASE (Crotonase) From Legionella Pneumophila Subsp. Pneumophila Str. Philadelphia 1 Length = 268

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 57/243 (23%), Positives = 102/243 (41%), Gaps = 10/243 (4%)
Query: 22  VRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDG 81
           V L+T+NR  + N   +++++ +   L+    D   +++++K  G+ FSAG DL      
Sbjct: 14  VGLLTMNRISKHNAFDNQLLTEMRIRLDSAINDTNVRVIVLKANGKHFSAGADLTWMQSM 73
Query: 82  RN-SKDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFS 140
            N +++  LE    +  L + I    K  +A+  G   GGGA L      ++ +    F 
Sbjct: 74  ANFTEEENLEDSLVLGNLMYSISQSPKPTIAMVQGAAFGGGAGLAAACDIAIASTSARFC 133
Query: 141 TPEASIGFHTDCGFSFIHSRLPGHLGEFLALTGARLNGKELVAAGLATHFVPSEKLPELE 200
             E  +G        ++   +     + L ++    +     +  L  H VP + L E  
Sbjct: 134 FSEVKLGLIPAVISPYVVRAIGERAAKMLFMSAEVFDATRAYSLNLVQHCVPDDTLLEF- 192
Query: 201 KRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKETVAEIIKSFEAEAG 260
                L    +I+  +A E      QL  Q V NK+  IDE   + T + I     ++ G
Sbjct: 193 ----TLKYASQIS-NNAPEAVKNSKQL-AQYVANKK--IDEELVRYTASLIAHKRVSDEG 244
Query: 261 KEG 263
           +EG
Sbjct: 245 QEG 247

>pdb|3M6M|A Chain A, Crystal Structure Of Rpff Complexed With Rec Domain Of Rpfc Length = 305

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/142 (24%), Positives = 55/142 (38%), Gaps = 6/142 (4%)
Query: 57  AKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSC--LEVVYRMYWLCHHIHT---YKKTQVA 111
           A  V++      F+ GGDL +F       D    L+   R     H  H     +   +A
Sbjct: 86  APHVVLASDSDVFNLGGDLALFCQLIREGDRARLLDYAQRCVRGVHAFHVGLGARAHSIA 145
Query: 112 LAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCG-FSFIHSRLPGHLGEFLA 170
           L  G  +GGG    +     +  E  +   PE         G +SF+  R+  HL + + 
Sbjct: 146 LVQGNALGGGFEAALSCHTIIAEEGVMMGLPEVLFDLFPGMGAYSFMCQRISAHLAQKIM 205
Query: 171 LTGARLNGKELVAAGLATHFVP 192
           L G   + ++L+  GL    VP
Sbjct: 206 LEGNLYSAEQLLGMGLVDRVVP 227

>pdb|4EML|A Chain A, Synechocystis Sp. Pcc 6803 1,4-Dihydroxy-2-Naphthoyl-Coenzyme A Synthase (Menb) In Complex With Bicarbonate Length = 275

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 51/242 (21%), Positives = 99/242 (40%), Gaps = 19/242 (7%)
Query: 5   VVKNPDEQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKG 64
           + K+ D+  +L  + G +  + +NRP + N    + V  L +      +D++  +V++ G
Sbjct: 5   IAKHYDD--ILYYKAGGIAKIVINRPHKRNAFRPQTVFELYDAFCNAREDNRIGVVLLTG 62
Query: 65  VG------RAFSAGGDLKMFYDGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITM 118
            G       AF +GGD  +  +G    D     +  +  L   I +  K  +AL  G  +
Sbjct: 63  AGPHSDGKYAFCSGGDQSVRGEGGYIDDQGTPRL-NVLDLQRLIRSMPKVVIALVAGYAI 121
Query: 119 GGGASLMVPLKFSVVTEKTVFSTPEASIG-FHTDCGFSFIHSRLPGHLGEFLALTGARLN 177
           GGG  L +    ++  +  +F      +G F    G S++   +       +     + +
Sbjct: 122 GGGHVLHLVCDLTIAADNAIFGQTGPKVGSFDGGFGSSYLARIVGQKKAREIWYLCRQYS 181
Query: 178 GKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIE----EFSEDVQLDGQSVL 233
            +E    G+    VP ++L E      G+    EI  KS +     + + +   DGQ+ L
Sbjct: 182 AQEAERMGMVNTVVPVDRLEEE-----GIQWAKEILSKSPLAIRCLKAAFNADCDGQAGL 236
Query: 234 NK 235
            +
Sbjct: 237 QE 238

>pdb|3LKE|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From Bacillus Halodurans Length = 263

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 48/191 (25%), Positives = 86/191 (45%), Gaps = 7/191 (3%)
Query: 18  EIGNVRL-VTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRA-FSAGGDL 75
           EI N  L +TL+ P + N + +++ + L E +     +     +I++   RA FS+G  L
Sbjct: 9   EIQNDALYITLDYPEKKNGLDAELGTSLLEAIRAGNNETSIHSIILQSKHRAYFSSGPRL 68
Query: 76  K-MFYDGRNSKDSCL-EVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVV 133
           + +     +  D  L EV++ +      I T  K  VAL +G   GGG ++M+     + 
Sbjct: 69  EDLLICASDQSDVRLREVLHVLNHCVLEIFTSPKVTVALINGYAYGGGFNMMLACDRRIA 128
Query: 134 TEKTVFSTPEASIGFHTDCGFSFIHSRLPGHLGEF-LALTGARLNGKELVAAGLATHFVP 192
             +  F      +G   D G S+   R+ G+     L L G     +E +  GL      
Sbjct: 129 LRRAKFLENFHKMGISPDLGASYFLPRIIGYEQTMNLLLEGKLFTSEEALRLGLIQEICE 188
Query: 193 SEKLPELEKRL 203
           +++  EL++R+
Sbjct: 189 NKQ--ELQERV 197

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	392
3bpt_A	363	3-hydroxyisobutyryl-COA hydrolase; coenzyme A, bet	1e-148
3ju1_A	407	Enoyl-COA hydratase/isomerase family protein; alph	1e-142
3l3s_A	263	Enoyl-COA hydratase/isomerase family protein; crot	4e-29
3gow_A	254	PAAG, probable enoyl-COA hydratase; the spiral fol	5e-29
2ej5_A	257	Enoyl-COA hydratase subunit II; structural genomic	1e-27
2q35_A	243	CURF; crotonase, lyase; 1.65A {Lyngbya majuscula}	3e-27
1pjh_A	280	Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral	3e-27
3t3w_A	279	Probable enoyl-COA hydratase; ssgcid, structural g	2e-26
3p5m_A	255	Enoyl-COA hydratase/isomerase; seattle structural	2e-26
3njd_A	333	Enoyl-COA hydratase; ssgcid, mycobacerium smegmati	3e-26
3fdu_A	266	Putative enoyl-COA hydratase/isomerase; structural	4e-26
3g64_A	279	Putative enoyl-COA hydratase; alpha-beta structure	5e-26
3i47_A	268	Enoyl COA hydratase/isomerase (crotonase); structu	6e-26
1nzy_A	269	Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogen	8e-26
3hp0_A	267	Putative polyketide biosynthesis enoyl-COA hydrata	1e-25
3qxz_A	265	Enoyl-COA hydratase/isomerase; structural genomics	3e-25
3qk8_A	272	Enoyl-COA hydratase ECHA15; ssgcid, NIH, niaid, SB	3e-25
1wz8_A	264	Enoyl-COA hydratase; lyase, crotonase, hexamer, st	3e-25
3qmj_A	256	Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid,	4e-25
3myb_A	286	Enoyl-COA hydratase; ssgcid, struct genomics, seat	5e-25
3isa_A	254	Putative enoyl-COA hydratase/isomerase; structural	5e-25
3swx_A	265	Probable enoyl-COA hydratase/isomerase; structural	5e-25
2vx2_A	287	Enoyl-COA hydratase domain-containing protein 3; i	8e-25
2f6q_A	280	Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxis	1e-24
3qxi_A	265	Enoyl-COA hydratase ECHA1; structural genomics, se	2e-24
3qre_A	298	Enoyl-COA hydratase, ECHA12_1; structural genomics	3e-24
3oc7_A	267	Enoyl-COA hydratase; seattle structural genomics c	3e-24
3rrv_A	276	Enoyl-COA hydratase/isomerase; structural genomics	5e-24
3sll_A	290	Probable enoyl-COA hydratase/isomerase; structural	7e-24
3lke_A	263	Enoyl-COA hydratase; nysgrc, target 11251J, struct	8e-24
2fbm_A	291	Y chromosome chromodomain protein 1, telomeric IS;	9e-24
3pe8_A	256	Enoyl-COA hydratase; emerald biostructures, struct	2e-23
4f47_A	278	Enoyl-COA hydratase ECHA19; ssgcid, seattle struct	2e-23
3he2_A	264	Enoyl-COA hydratase ECHA6; fatty acid metabolism,	3e-23
2j5i_A	276	P-hydroxycinnamoyl COA hydratase/lyase; vanillin,	3e-23
3r6h_A	233	Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium m	3e-23
2gtr_A	261	CDY-like, chromodomain Y-like protein; structural	4e-23
2a7k_A	250	CARB; crotonase, antibiotic, beta-lactam, biosynth	8e-23
3trr_A	256	Probable enoyl-COA hydratase/isomerase; ssgcid, st	1e-22
3lao_A	258	Enoyl-COA hydratase/isomerase; alpha-beta sandwich	1e-22
1uiy_A	253	Enoyl-COA hydratase; lyase, beta-oxidation, croton	5e-22
3r9q_A	262	Enoyl-COA hydratase/isomerase; ssgcid, lyase,isome	5e-22
2j5g_A	263	ALR4455 protein; enzyme evolution, C-C bond hydrol	8e-22
3rsi_A	265	Putative enoyl-COA hydratase/isomerase; structural	2e-21
1szo_A	257	6-oxocamphor hydrolase; enzyme-product complex; HE	5e-21
3r9t_A	267	ECHA1_1; ssgcid, seattle structural genomics cente	1e-20
1dci_A	275	Dienoyl-COA isomerase; lyase; 1.50A {Rattus norveg	2e-20
2pbp_A	258	Enoyl-COA hydratase subunit I; B-oxidation, struct	3e-20
3tlf_A	274	Enoyl-COA hydratase/isomerase; structural genomics	6e-20
3moy_A	263	Probable enoyl-COA hydratase; ssgcid, seattle stru	1e-19
3h81_A	278	Enoyl-COA hydratase ECHA8; niaid, decode, infectio	1e-19
3ot6_A	232	Enoyl-COA hydratase/isomerase family protein; stru	2e-19
3t8b_A	334	1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase	3e-19
3pea_A	261	Enoyl-COA hydratase/isomerase family protein; stru	4e-19
3kqf_A	265	Enoyl-COA hydratase/isomerase family protein; IDP0	9e-19
3hin_A	275	Putative 3-hydroxybutyryl-COA dehydratase; structu	1e-18
1mj3_A	260	Enoyl-COA hydratase, mitochondrial; homohexamer, l	3e-18
2np9_A	440	DPGC; protein inhibitor complex, oxidoreductase; H	3e-18
1ef8_A	261	Methylmalonyl COA decarboxylase; lyase; 1.85A {Esc	4e-18
1hzd_A	272	AUH, AU-binding protein/enoyl-COA hydratase; RNA-b	2e-17
3m6n_A	305	RPFF protein; enoyl-COA hydratase, lyase; 1.80A {X	4e-17
3t89_A	289	1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase	8e-17
2uzf_A	273	Naphthoate synthase; lyase, menaquinone biosynthes	8e-17
4eml_A	275	Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coe	3e-16
4di1_A	277	Enoyl-COA hydratase ECHA17; structural genomics, s	5e-16
1sg4_A	260	3,2-trans-enoyl-COA isomerase, mitochondrial; crot	7e-16
3zwc_A	742	Peroxisomal bifunctional enzyme; beta oxidation pa	8e-16
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	1e-15
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	1e-15
3gkb_A	287	Putative enoyl-COA hydratase; structural genomics,	3e-15
2ppy_A	265	Enoyl-COA hydratase; beta-oxidation, fatty acid me	1e-14
3h0u_A	289	Putative enoyl-COA hydratase; structural genomics,	1e-14
2w3p_A	556	Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ri	1e-12
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04

>3bpt_A 3-hydroxyisobutyryl-COA hydrolase; coenzyme A, beta-hydroxyisobutyryl acid, querceti structural genomics consortium, SGC; HET: QUE; 1.50A {Homo sapiens} Length = 363

 Score =  424 bits (1091), Expect = e-148
 Identities = 138/364 (37%), Positives = 210/364 (57%), Gaps = 13/364 (3%)

Query: 10  DEQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVG-RA 68
             + VL  + G   ++TLNRP+ LN ++  ++  +   L+KWE+D +  L+I+KG G +A
Sbjct: 4   AAEEVLLGKKGCTGVITLNRPKFLNALTLNMIRQIYPQLKKWEQDPETFLIIIKGAGGKA 63

Query: 69  FSAGGDLKMFYDGRNSKDSCLEVVYRM-YWLCHHIHTYKKTQVALAHGITMGGGASLMVP 127
           F AGGD+++  +   +K     V +R  Y L + + + +K  VAL HGITMGGG  L V 
Sbjct: 64  FCAGGDIRVISEAEKAKQKIAPVFFREEYMLNNAVGSCQKPYVALIHGITMGGGVGLSVH 123

Query: 128 LKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHLGEFLALTGARLNGKELVAAGLA 187
            +F V TEK +F+ PE +IG   D G  +   RL G LG FLALTG RL G+++  AG+A
Sbjct: 124 GQFRVATEKCLFAMPETAIGLFPDVGGGYFLPRLQGKLGYFLALTGFRLKGRDVYRAGIA 183

Query: 188 THFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQS---VLNKQSIIDECFS 244
           THFV SEKL  LE+ L+ L +  +  + S +E +  + ++D      +      I+ CFS
Sbjct: 184 THFVDSEKLAMLEEDLLALKSPSKENIASVLENYHTESKIDRDKSFILEEHMDKINSCFS 243

Query: 245 KETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKE 304
             TV EII++ + +       +    LK + K SPT LKITLR + EG  ++L E L  E
Sbjct: 244 ANTVEEIIENLQQDGSS----FALEQLKVINKMSPTSLKITLRQLMEGSSKTLQEVLTME 299

Query: 305 FRLTINILRAIISADIYEGIRALTIEKDNAPKWDPPTLDKVDDDKVDLVFQPFGEDLELQ 364
           +RL+   +R     D +EG+RA+ I+KD +PKW P  L +V ++ ++  F+  G   +L+
Sbjct: 300 YRLSQACMR---GHDFHEGVRAVLIDKDQSPKWKPADLKEVTEEDLNNHFKSLGSS-DLK 355

Query: 365 IPEN 368
             EN
Sbjct: 356 FAEN 359

>3ju1_A Enoyl-COA hydratase/isomerase family protein; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; HET: MSE; 2.30A {Shewanella oneidensis} Length = 407

 Score =  409 bits (1054), Expect = e-142
 Identities = 105/382 (27%), Positives = 171/382 (44%), Gaps = 25/382 (6%)

Query: 1   MAQGVVKNPDEQVVLGEEI-----GNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDD 55
           +      +   Q V+ + +       V +VTLN  + LN +   +V  +   L  W+KD 
Sbjct: 26  LVDKAAHSFATQNVVFQTLATASGKLVGVVTLNVEKALNALDLDMVRAMTVQLNLWKKDP 85

Query: 56  QAKLVIVKGVG-RAFSAGGDLKMFYDGRNSKDS-----CLEVVYRMYWLCHHIHTYKKTQ 109
               V++ G G +AF AGGD++  Y    +                Y L + +HTY K  
Sbjct: 86  LIACVVLDGSGEKAFCAGGDVRALYHASVAAKGQVTEVAKVFFEEEYRLDYLLHTYGKPV 145

Query: 110 VALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHLGEFL 169
           +    GI MGGG  LM      VVTE +  + PE +IG + D G S+  +R+PG +G FL
Sbjct: 146 LVWGDGIVMGGGLGLMAGASHKVVTETSRIAMPEVTIGLYPDVGGSYFLNRMPGKMGLFL 205

Query: 170 ALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIA-----VKSAIEEFSED 224
            LT   +N  +    GLA H++  +    +   +  L+  D  A     + + I E S  
Sbjct: 206 GLTAYHMNAADACYVGLADHYLNRDDKELMFDAMATLDWSDSPALNHQRLDTMINELSNQ 265

Query: 225 VQLD-GQSVLNK-QSIIDECFSKETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGL 282
           V +  G SVL + Q +ID   +  ++ +I+      +      W+      +   SP   
Sbjct: 266 VDIPKGDSVLAESQEMIDRLMA-GSLTDIVTRMSTLST--DEAWLSKACATMLAGSPISW 322

Query: 283 KITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGIRALTIEKDNAPKWDPPTL 342
            +     + G + SLA+C K E  +++N+       D  EG+RAL I+KD  PKW    +
Sbjct: 323 HLAYIQTQLGTKLSLAQCFKWELTVSVNVCA---KGDFCEGVRALLIDKDKQPKWQFADV 379

Query: 343 DKVDDDKVDLVFQ-PFGEDLEL 363
             V +  ++ +   P+GE+  L
Sbjct: 380 QSVPNSVIEDILTSPWGEEHPL 401

>3l3s_A Enoyl-COA hydratase/isomerase family protein; crotonase superfamily, dimer of trimers, PSI-2, NYSGXRC, structural genomics; 2.32A {Ruegeria pomeroyi} Length = 263

 Score =  112 bits (283), Expect = 4e-29
 Identities = 50/216 (23%), Positives = 81/216 (37%), Gaps = 16/216 (7%)

Query: 10  DEQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAF 69
            + ++       V  +TL R    + +S  +++ L + L +   DD   ++++ G GR F
Sbjct: 5   QDGLLGEVLSEGVLTLTLGRAPA-HPLSRAMIAALHDALRRAMGDDHVHVLVIHGPGRIF 63

Query: 70  SAGGDLKMFYDGRNSKDSCLEVVYRMYWLCHH----IHTYKKTQVALAHGITMGGGASLM 125
            AG DLK     R   D     V  ++  C      +    K  +AL  GI    G  LM
Sbjct: 64  CAGHDLKEIGRHRADPDEGRAFVTDLFEACSALMLDLAHCPKPTIALVEGIATAAGLQLM 123

Query: 126 VPLKFSVVTEKTVFSTPEASIGFHTDCGF-SFIHSRL--PGHLGEFLALTGARLNGKELV 182
                +  +    F  P    G    C   +   SR+     + E +ALTGA  +    +
Sbjct: 124 AACDLAYASPAARFCLPGVQNGGF--CTTPAVAVSRVIGRRAVTE-MALTGATYDADWAL 180

Query: 183 AAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAI 218
           AAGL    +P   L      L        +A ++  
Sbjct: 181 AAGLINRILPEAALATHVADLA-----GALAARNQA 211

>2ej5_A Enoyl-COA hydratase subunit II; structural genomics, GK2038, NPPSFA, national project on prote structural and functional analyses; 2.00A {Geobacillus kaustophilus} Length = 257

 Score =  108 bits (273), Expect = 1e-27
 Identities = 54/191 (28%), Positives = 87/191 (45%), Gaps = 10/191 (5%)

Query: 12  QVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSA 71
           + +  E  G V  +TLNRP QLN  + ++ + + + L++   D   + V++ G GRAF A
Sbjct: 3   ETIRYEVKGQVAWLTLNRPDQLNAFTEQMNAEVTKALKQAGADPNVRCVVITGAGRAFCA 62

Query: 72  GGDLKMFYDGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFS 131
           G DL    +  +  D           +   +H  +K  VA  +G   G G SL +   F 
Sbjct: 63  GEDLSGVTEEMDHGDVLRSRYAP---MMKALHHLEKPVVAAVNGAAAGAGMSLALACDFR 119

Query: 132 VVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHLGEF----LALTGARLNGKELVAAGLA 187
           +++EK  F+     +G   D G  +    LP  +G      LA+ G ++  +E  A GLA
Sbjct: 120 LLSEKASFAPAFIHVGLVPDAGHLY---YLPRLVGRAKALELAVLGEKVTAEEAAALGLA 176

Query: 188 THFVPSEKLPE 198
           T  +P     E
Sbjct: 177 TKVIPLSDWEE 187

>2q35_A CURF; crotonase, lyase; 1.65A {Lyngbya majuscula} PDB: 2q34_A 2q2x_A Length = 243

 Score =  107 bits (270), Expect = 3e-27
 Identities = 44/193 (22%), Positives = 71/193 (36%), Gaps = 14/193 (7%)

Query: 10  DEQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAF 69
           +  V L E    V  +T+      N  S  +V  L        ++ Q K+VI+ G G  F
Sbjct: 1   NAVVQLTELGNGVVQITMKDESSRNGFSPSIVEGLRHCFSVVAQNQQYKVVILTGYGNYF 60

Query: 70  SAGGDLKMFYDGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLK 129
           S+G   +        +   L++          I   +   +A   G + GGG  L +   
Sbjct: 61  SSGASKEFLIRKTRGEVEVLDLSGL-------ILDCEIPIIAAMQGHSFGGGLLLGLYAD 113

Query: 130 FSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHLGEF----LALTGARLNGKELVAAG 185
           F V ++++V++T     GF      S     L   LG      +  TG    GKEL   G
Sbjct: 114 FVVFSQESVYATNFMKYGFTPVGATSL---ILREKLGSELAQEMIYTGENYRGKELAERG 170

Query: 186 LATHFVPSEKLPE 198
           +    V  + +  
Sbjct: 171 IPFPVVSRQDVLN 183

>1pjh_A Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral fold, inter-trimer contacts; 2.10A {Saccharomyces cerevisiae} SCOP: c.14.1.3 PDB: 1hno_A 1k39_A* 1hnu_A Length = 280

 Score =  108 bits (271), Expect = 3e-27
 Identities = 46/341 (13%), Positives = 89/341 (26%), Gaps = 86/341 (25%)

Query: 7   KNPDEQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVG 66
           +    + +     G   ++ L  P  LN +  +    L E LE  +++      I++  G
Sbjct: 4   EIRQNEKISYRIEGPFFIIHLINPDNLNALEGEDYIYLGELLELADRNRDVYFTIIQSSG 63

Query: 67  RAFSAGGDLKMFYD---------GRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALAHGIT 117
           R FS+G D K                +       V R  ++      + K  +   +G  
Sbjct: 64  RFFSSGADFKGIAKAQGDDTNKYPSETSKWVSNFVARNVYVTDAFIKHSKVLICCLNGPA 123

Query: 118 MGGGASLMVPLKFSVV---TEKTVFSTPEASIGFHTDCGFSFIHSRLPGHLGEF----LA 170
           +G  A+L+      +V    +K     P A++G  T+ G +     LP   G        
Sbjct: 124 IGLSAALV--ALCDIVYSINDKVYLLYPFANLGLITEGGTTV---SLPLKFGTNTTYECL 178

Query: 171 LTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQ 230
           +         +   G  +                              E F+  V     
Sbjct: 179 MFNKPFKYDIMCENGFISKNFNMPSSNA--------------------EAFNAKVL---- 214

Query: 231 SVLNKQSIIDECFSKETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVR 290
                          E + E +K                                 + ++
Sbjct: 215 ---------------EELREKVKGL----------------------YLPSCLGMKKLLK 237

Query: 291 EGREQSLAECLKKEFRLTINILRAIISADIYEGIRALTIEK 331
                +  +    E       L+  +  +  +  R L   K
Sbjct: 238 SNHIDAFNKANSVEVNE---SLKYWVDGEPLKRFRQL-GSK 274

>3t3w_A Probable enoyl-COA hydratase; ssgcid, structural genomics, seattle ST genomics center for infectious disease, lyase; 1.80A {Mycobacterium thermoresistibile} PDB: 3ome_A Length = 279

 Score =  106 bits (266), Expect = 2e-26
 Identities = 41/199 (20%), Positives = 74/199 (37%), Gaps = 14/199 (7%)

Query: 8   NPDEQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGR 67
              E  +  +    +  +TLNRP   N  + +++  L     +  +D+   +++++  G+
Sbjct: 16  QRTEMYIDYDVSDRIATITLNRPEAANAQNPELLDELDAAWTRAAEDNDVSVIVLRANGK 75

Query: 68  AFSAGGDLKMF--YDGRNSKDSCLEVVYRMY-WLCHHIHTYKKTQVALAHGITMGGGASL 124
            FSAG DL+       + + +       R Y           K  +A   G  + GG  L
Sbjct: 76  HFSAGHDLRGGGPVPDKLTLEFIYAHESRRYLEYSLRWRNVPKPSIAAVQGRCISGGLLL 135

Query: 125 MVPLKFSVVTEKTVFSTPEASIGFHTDCGF-SFIHSRLPGHLGEFLA----LTGARLNGK 179
             P    +  E  +FS P   +      G     H+     LG   A     TG  +  +
Sbjct: 136 CWPCDLIIAAEDALFSDPVVLMD---IGGVEYHGHTWE---LGPRKAKEILFTGRAMTAE 189

Query: 180 ELVAAGLATHFVPSEKLPE 198
           E+   G+    VP ++L  
Sbjct: 190 EVAQTGMVNRVVPRDRLDA 208

>3p5m_A Enoyl-COA hydratase/isomerase; seattle structural genomics center for infectious disease, S coenzyme A, tuberculosis; 2.05A {Mycobacterium avium} Length = 255

 Score =  105 bits (264), Expect = 2e-26
 Identities = 47/192 (24%), Positives = 82/192 (42%), Gaps = 15/192 (7%)

Query: 11  EQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFS 70
              +  E  G V  + L+RP +LN + + ++  L+ ++   E D+  + V++ G GRAF 
Sbjct: 5   MNGISVEHDGAVLRIRLDRPEKLNAVDTPMLEELSVHIRDAEADESVRAVLLTGAGRAFC 64

Query: 71  AGGDLKMFYDGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKF 130
           +GGDL    D   + D+   VV         I +  K  +A  HG  +G G SL +    
Sbjct: 65  SGGDLTGG-DTAGAADAANRVVRA-------ITSLPKPVIAGVHGAAVGFGCSLALACDL 116

Query: 131 SVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHLGEF----LALTGARLNGKELVAAGL 186
            V    + F      +G   D G S     LP  +G      +A+T  +++       G+
Sbjct: 117 VVAAPASYFQLAFTRVGLMPDGGASA---LLPLLIGRARTSRMAMTAEKISAATAFEWGM 173

Query: 187 ATHFVPSEKLPE 198
            +H   +++   
Sbjct: 174 ISHITSADEYES 185

>3njd_A Enoyl-COA hydratase; ssgcid, mycobacerium smegmatis, structu genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium smegmatis} PDB: 3njb_A Length = 333

 Score =  106 bits (266), Expect = 3e-26
 Identities = 40/222 (18%), Positives = 68/222 (30%), Gaps = 38/222 (17%)

Query: 9   PDEQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRA 68
            + + +  E    V  +T NRP + N I +     L+  +E+ + D    +++V G G  
Sbjct: 32  DNLKTMTYEVTDRVARITFNRPEKGNAIVADTPLELSALVERADLDPDVHVILVSGRGEG 91

Query: 69  FSAGGDLKMFYDGRNSKDS----------------------------CLEVVYRMYWLCH 100
           F AG DL  + +G +S                                 +++ R      
Sbjct: 92  FCAGFDLSAYAEGSSSAGGGSPYEGTVLSGKTQALNHLPDEPWDPMVDYQMMSRFVRGFA 151

Query: 101 HIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSR 160
            +    K  V   HG  + GG  + +     +         P   +      G       
Sbjct: 152 SLMHCDKPTVVKIHGYCVAGGTDIALHADQVIAAADAKIGYPPMRVWGVPAAGL------ 205

Query: 161 LPGHLGEF----LALTGARLNGKELVAAGLATHFVPSEKLPE 198
               LG+     L  TG  + G +    GLA        L  
Sbjct: 206 WAHRLGDQRAKRLLFTGDCITGAQAAEWGLAVEAPDPADLDA 247

>3fdu_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2; 2.00A {Acinetobacter baumannii} Length = 266

 Score =  104 bits (263), Expect = 4e-26
 Identities = 36/187 (19%), Positives = 73/187 (39%), Gaps = 7/187 (3%)

Query: 10  DEQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAF 69
               +     G V  + +NRP   N +  ++   +A+ L++ +++   ++V+++G    F
Sbjct: 3   LHPHLNANLEGGVLTLAINRPEAKNALYGELYLWIAKALDEADQNKDVRVVVLRGAEHDF 62

Query: 70  SAGGDLKMFYDGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLK 129
           +AG D+K F     + ++        + L        K  +    G+ +G G ++++   
Sbjct: 63  TAGNDMKDFMGFVQNPNAGPAGQVPPFVLLKSAARLSKPLIIAVKGVAIGIGVTILLQAD 122

Query: 130 FSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHLGEF----LALTGARLNGKELVAAG 185
                   +F  P  S+G   + G S     L    G      L  T  + N +  + AG
Sbjct: 123 LVFADNTALFQIPFVSLGLSPEGGASQ---LLVKQAGYHKAAELLFTAKKFNAETALQAG 179

Query: 186 LATHFVP 192
           L    V 
Sbjct: 180 LVNEIVE 186

>3g64_A Putative enoyl-COA hydratase; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; 2.05A {Streptomyces coelicolor A3} Length = 279

 Score =  104 bits (263), Expect = 5e-26
 Identities = 44/197 (22%), Positives = 78/197 (39%), Gaps = 10/197 (5%)

Query: 9   PDEQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRA 68
           P+ + +  E    V  VTL RP +LN ++ +  + L + L +  +    + +++ G GR 
Sbjct: 14  PEWRHLRVEITDGVATVTLARPDKLNALTFEAYADLRDLLAELSRRRAVRALVLAGEGRG 73

Query: 69  FSAGGDLKMFYDGRNSKDSCLEVVYRMYW--LCHHIHTYKKTQVALAHGITMGGGASLMV 126
           F +GGD+        S D+   + +      +   +       +A  HG+  G GA L +
Sbjct: 74  FCSGGDVDEIIGATLSMDTARLLDFNRMTGQVVRAVRECPFPVIAALHGVAAGAGAVLAL 133

Query: 127 PLKFSVVTEKTVFSTPEASIGFH-TDCGFSFIHSRLPGHLGEF----LALTGARLNGKEL 181
              F V    T F+     +G    D G ++    LP  +G      L + G  +   E 
Sbjct: 134 AADFRVADPSTRFAFLFTRVGLSGGDMGAAY---LLPRVVGLGHATRLLMLGDTVRAPEA 190

Query: 182 VAAGLATHFVPSEKLPE 198
              GL +      +  E
Sbjct: 191 ERIGLISELTEEGRADE 207

>3i47_A Enoyl COA hydratase/isomerase (crotonase); structural genomics; 1.58A {Legionella pneumophila subsp} Length = 268

 Score =  104 bits (262), Expect = 6e-26
 Identities = 55/260 (21%), Positives = 101/260 (38%), Gaps = 20/260 (7%)

Query: 10  DEQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAF 69
               +L E    V L+T+NR  + N   +++++ +   L+    D   +++++K  G+ F
Sbjct: 2   SLSDLLYEIQDKVGLLTMNRISKHNAFDNQLLTEMRIRLDSAINDTNVRVIVLKANGKHF 61

Query: 70  SAGGDLK-MFYDGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPL 128
           SAG DL  M      +++  LE    +  L + I    K  +A+  G   GGGA L    
Sbjct: 62  SAGADLTWMQSMANFTEEENLEDSLVLGNLMYSISQSPKPTIAMVQGAAFGGGAGLAAAC 121

Query: 129 KFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHLGEFLA----LTGARLNGKELVAA 184
             ++ +    F   E  +G         I   +   +GE  A    ++    +     + 
Sbjct: 122 DIAIASTSARFCFSEVKLGLI--PA--VISPYVVRAIGERAAKMLFMSAEVFDATRAYSL 177

Query: 185 GLATHFVPSEKLPELEKRLIG-LNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECF 243
            L  H VP + L E   +    ++     AVK++ +                   IDE  
Sbjct: 178 NLVQHCVPDDTLLEFTLKYASQISNNAPEAVKNSKQLAQYVANKK----------IDEEL 227

Query: 244 SKETVAEIIKSFEAEAGKEG 263
            + T + I     ++ G+EG
Sbjct: 228 VRYTASLIAHKRVSDEGQEG 247

>1nzy_A Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogenase; lyase; HET: BCA; 1.80A {Pseudomonas SP} SCOP: c.14.1.3 PDB: 1jxz_A* 1nzy_B* Length = 269

 Score =  104 bits (261), Expect = 8e-26
 Identities = 43/194 (22%), Positives = 76/194 (39%), Gaps = 10/194 (5%)

Query: 12  QVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSA 71
           + +       V  +T+  PR  N +S K +  + + L + E+DD    V++ G   AF A
Sbjct: 3   EAIGHRVEDGVAEITIKLPRHRNALSVKAMQEVTDALNRAEEDDSVGAVMITGAEDAFCA 62

Query: 72  GGDLKMFYDGRNS---KDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPL 128
           G  L+     +     +D         + + H I   K+  +A  +G+  GGG  + +  
Sbjct: 63  GFYLREIPLDKGVAGVRDHFRIAALWWHQMIHKIIRVKRPVLAAINGVAAGGGLGISLAS 122

Query: 129 KFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHLGEF----LALTGARLNGKELVAA 184
             ++  +   F     +IG   D   S+    L   +G      L LT   L  +E    
Sbjct: 123 DMAICADSAKFVCAWHTIGIGNDTATSY---SLARIVGMRRAMELMLTNRTLYPEEAKDW 179

Query: 185 GLATHFVPSEKLPE 198
           GL +   P ++  E
Sbjct: 180 GLVSRVYPKDEFRE 193

>3hp0_A Putative polyketide biosynthesis enoyl-COA hydratase homolog PKSH; polyketide synthase, enoyl COA hydratase,isomerase; 2.32A {Bacillus subtilis} Length = 267

 Score =  103 bits (260), Expect = 1e-25
 Identities = 39/224 (17%), Positives = 75/224 (33%), Gaps = 13/224 (5%)

Query: 9   PDEQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRA 68
              Q +      +V  +T +RP   N I+  ++    + L + E      +V+++G+   
Sbjct: 4   VTYQTIKVRFQASVCYITFHRPEANNTINDTLIEECLQVLNQCE-TSTVTVVVLEGLPEV 62

Query: 69  FSAGGDLKMFYDGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPL 128
           F  G D +  Y               +Y L   + T     ++   G    GG   +   
Sbjct: 63  FCFGADFQEIYQEMKRGRKQASSQEPLYDLWMKLQTGPYVTISHVRGKVNAGGLGFVSAT 122

Query: 129 KFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHLGEF----LALTGARLNGKELVAA 184
             ++  +   FS  E   G +  C    +   L   +G      + L    ++ +E    
Sbjct: 123 DIAIADQTASFSLSELLFGLYPAC----VLPFLIRRIGRQKAHYMTLMTKPISVQEASEW 178

Query: 185 GLATHFVPSEKLPELEKRLIGLNTGDEIAV---KSAIEEFSEDV 225
           GL   F     +  L K L+ L   ++  +   K  +      V
Sbjct: 179 GLIDAFDAESDV-LLRKHLLRLRRLNKKGIAHYKQFMSSLDHQV 221

>3qxz_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.35A {Mycobacterium abscessus} Length = 265

 Score =  102 bits (256), Expect = 3e-25
 Identities = 35/193 (18%), Positives = 75/193 (38%), Gaps = 10/193 (5%)

Query: 10  DEQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAF 69
               +  E    V ++TL+ P   N  + ++   L    ++ + D   +++++ G   AF
Sbjct: 5   MVTELHEEIRDGVAVLTLHGPSTRNSFTVELGRQLGAAYQRLDDDPAVRVIVLTGAPPAF 64

Query: 70  SAGGDLKMFYDGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLK 129
            +G  +    +   +  +          +       +   +A  +G  +G G +L +   
Sbjct: 65  CSGAQISAAAETFAAPRNPDFSASP---VQPAAFELRTPVIAAVNGHAIGIGMTLALHAD 121

Query: 130 FSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHLGEF----LALTGARLNGKELVAAG 185
             ++ E+  ++ P+   G   D    +    LP  +G      L LTGA  + +  V  G
Sbjct: 122 IRILAEEGRYAIPQVRFGVAPDALAHW---TLPRLVGTAVAAELLLTGASFSAQRAVETG 178

Query: 186 LATHFVPSEKLPE 198
           LA   +P+ K+  
Sbjct: 179 LANRCLPAGKVLG 191

>3qk8_A Enoyl-COA hydratase ECHA15; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 1.60A {Mycobacterium marinum M} PDB: 3q1t_A Length = 272

 Score =  102 bits (256), Expect = 3e-25
 Identities = 36/183 (19%), Positives = 73/183 (39%), Gaps = 8/183 (4%)

Query: 20  GNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFY 79
             V  + L+ P  LN +  ++   LA+     ++D   ++V+V+G G+AFS+GG  ++  
Sbjct: 22  HGVLNLVLDSP-GLNSVGPQMHRDLADVWPVIDRDPDVRVVLVRGEGKAFSSGGSFELID 80

Query: 80  DGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVF 139
           +     +  + ++     L  ++    K  V+   G  +G G  + +    SV +     
Sbjct: 81  ETIGDYEGRIRIMREARDLVLNLVNLDKPVVSAIRGPAVGAGLVVALLADISVASATAKI 140

Query: 140 STPEASIGFHTDCGFSFIHSRLPGHLGEF----LALTGARLNGKELVAAGLATHFVPSEK 195
                 +G       +      P  +G        LT   L+G+E    GL +  V  ++
Sbjct: 141 IDGHTKLGVAAGDHAAI---CWPLLVGMAKAKYYLLTCETLSGEEAERIGLVSTCVDDDE 197

Query: 196 LPE 198
           +  
Sbjct: 198 VLP 200

>1wz8_A Enoyl-COA hydratase; lyase, crotonase, hexamer, structural genomics, riken S genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.14.1.3 Length = 264

 Score =  102 bits (256), Expect = 3e-25
 Identities = 42/192 (21%), Positives = 69/192 (35%), Gaps = 8/192 (4%)

Query: 11  EQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFS 70
             +        V  +T  R  +LN +   +   LA      E  +  + V+++G G  FS
Sbjct: 10  PGLAFAWPRPGVLEITF-RGEKLNAMPPALHRGLARVWRDLEAVEGVRAVLLRGEGGVFS 68

Query: 71  AGGDLKMFYDGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKF 130
           AGG   +  + R S ++ L V +    L      + +  VA    + +G G +L +    
Sbjct: 69  AGGSFGLIEEMRASHEALLRVFWEARDLVLGPLNFPRPVVAAVEKVAVGAGLALALAADI 128

Query: 131 SVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHLGEF----LALTGARLNGKELVAAGL 186
           +VV + T        +G              P  +G        L    L G+E    GL
Sbjct: 129 AVVGKGTRLLDGHLRLGVAAGDHAVL---LWPLLVGMAKAKYHLLLNEPLTGEEAERLGL 185

Query: 187 ATHFVPSEKLPE 198
               V  EK+ E
Sbjct: 186 VALAVEDEKVYE 197

>3qmj_A Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.20A {Mycobacterium marinum} Length = 256

 Score =  101 bits (255), Expect = 4e-25
 Identities = 44/191 (23%), Positives = 80/191 (41%), Gaps = 8/191 (4%)

Query: 12  QVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSA 71
             +  ++   VR +TLNRP  LN  +  +    A+ L     D Q  +V++ G GR FSA
Sbjct: 6   VTLQIDDDNRVRTLTLNRPEALNAFNEALYDATAQALLDAADDPQVAVVLLTGSGRGFSA 65

Query: 72  GGDLKMFYDGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFS 131
           G DL      R +  +  E  +    L   +  + K  +   +G+ +G GA+++     +
Sbjct: 66  GTDLAEM-QARITDPNFSEGKFGFRGLIKALAGFPKPLICAVNGLGVGIGATILGYADLA 124

Query: 132 VVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHLGEF----LALTGARLNGKELVAAGLA 187
            ++       P  S+G   +   S+    LP  +G      L ++   ++ +E +  GL 
Sbjct: 125 FMSSTARLKCPFTSLGVAPEAASSY---LLPQLVGRQNAAWLLMSSEWIDAEEALRMGLV 181

Query: 188 THFVPSEKLPE 198
                 E+L  
Sbjct: 182 WRICSPEELLP 192

>3myb_A Enoyl-COA hydratase; ssgcid, struct genomics, seattle structural genomics center for infectious lyase; 1.55A {Mycobacterium smegmatis} Length = 286

 Score =  102 bits (256), Expect = 5e-25
 Identities = 47/222 (21%), Positives = 86/222 (38%), Gaps = 14/222 (6%)

Query: 1   MAQGVVKNPDEQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLV 60
             QG     +  ++   +   V  +TLNRP+  N +S  +++ L E      +D+  + V
Sbjct: 15  QTQGPGSMSEPLLLQDRDERGVVTLTLNRPQAFNALSEAMLAALGEAFGTLAEDESVRAV 74

Query: 61  IVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGG 120
           ++   G+AF AG DLK       S++   ++  R   +   I       +A  HGI    
Sbjct: 75  VLAASGKAFCAGHDLKEMRA-EPSREYYEKLFARCTDVMLAIQRLPAPVIARVHGIATAA 133

Query: 121 GASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHLGEFLA----LTGARL 176
           G  L+     +V T    F+    ++G    C        L  ++G   A    +TG  +
Sbjct: 134 GCQLVAMCDLAVATRDARFAVSGINVG--LFCS--TPGVALSRNVGRKAAFEMLVTGEFV 189

Query: 177 NGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAI 218
           +  +    GL    V  + L +  + ++      +I  K   
Sbjct: 190 SADDAKGLGLVNRVVAPKALDDEIEAMV-----SKIVAKPRA 226

>3isa_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2, protein structure initiative, EN hydratase; 1.76A {Bordetella parapertussis} Length = 254

 Score =  101 bits (254), Expect = 5e-25
 Identities = 44/216 (20%), Positives = 69/216 (31%), Gaps = 22/216 (10%)

Query: 9   PDEQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRA 68
                +  E        TL+RP + N +S+++V  L + ++     +Q  L++  G GR 
Sbjct: 4   SASLPLAIERRPAAWTFTLSRPEKRNALSAELVEALIDGVDAAH-REQVPLLVFAGAGRN 62

Query: 69  FSAGGDLKMFYDGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPL 128
           FSAG D   +     S+   L  + R+  L   +       +ALAHG   G G  L    
Sbjct: 63  FSAGFDFTDYETQ--SEGDLLLRMVRIEMLLQRVAGSPSLTLALAHGRNFGAGVDLFAAC 120

Query: 129 KFSVVTEKTVFSTPEASIGF--HTDCGFSFIHSRLPGHLGEFLA----LTGARLNGKELV 182
           K+   T +  F  P    G    T         R    +G   A     +    +  E  
Sbjct: 121 KWRYCTPEAGFRMPGLKFGLVLGT--------RRFRDIVGADQALSILGSARAFDADEAR 172

Query: 183 AAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAI 218
             G         + P L                   
Sbjct: 173 RIGFVRDCAAQAQWPALIDAAAE-----AATALDPA 203

>3swx_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.10A {Mycobacterium abscessus} Length = 265

 Score =  101 bits (255), Expect = 5e-25
 Identities = 44/214 (20%), Positives = 74/214 (34%), Gaps = 13/214 (6%)

Query: 9   PDEQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRA 68
            D + +     G V ++ LNRP + N     ++  LA  L ++E D   +  ++ G G  
Sbjct: 6   SDYETLRIRRDGYVLVIGLNRPAKRNAFDKTMLEELALALGEYETDTDLRAAVLYGEGPL 65

Query: 69  FSAGGDLKMFYDGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPL 128
           F+AG DL           S         W         K  +   HG  +  G  L +  
Sbjct: 66  FTAGLDLASVAAEIQGGASLTPEGGINPWQ-VDGRQLSKPLLVAVHGKVLTLGIELALAA 124

Query: 129 KFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHLGEFLA----LTGARLNGKELVAA 184
              +  E   F+  E + G +   G +    R P   G   A    LT    +  E    
Sbjct: 125 DIVIADETATFAQLEVNRGIYPFGGATI---RFPRTAGWGNAMRWMLTADTFDAVEAHRI 181

Query: 185 GLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAI 218
           G+    VP  +   ++     +     IA ++ +
Sbjct: 182 GIVQEIVPVGEH--VDT---AIAIAQTIARQAPL 210

>2vx2_A Enoyl-COA hydratase domain-containing protein 3; isomerase, fatty acid metabolism, transit peptide, lipid Met crontonase, mitochondrion, CAsp; 2.3A {Homo sapiens} Length = 287

 Score =  101 bits (254), Expect = 8e-25
 Identities = 46/215 (21%), Positives = 92/215 (42%), Gaps = 12/215 (5%)

Query: 7   KNPDEQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVG 66
           +  + +     ++  +R + L+ P++ N +S  ++  L   +      +  K++I+   G
Sbjct: 28  RESEPRPTSARQLDGIRNIVLSNPKKRNTLSLAMLKSLQSDILHDADSNDLKVIIISAEG 87

Query: 67  RAFSAGGDLKMFYDGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMV 126
             FS+G DLK   +    +D   EV      +  HI  +    +A+ +G+    G  L+ 
Sbjct: 88  PVFSSGHDLKELTE-EQGRDYHAEVFQTCSKVMMHIRNHPVPVIAMVNGLATAAGCQLVA 146

Query: 127 PLKFSVVTEKTVFSTPEASIGFHTDCGFSFIH-SRL--PGHLGEFLALTGARLNGKELVA 183
               +V ++K+ F+TP  ++G    C    +  +R        E +  TG  ++ +E + 
Sbjct: 147 SCDIAVASDKSSFATPGVNVG--LFCSTPGVALARAVPRKVALE-MLFTGEPISAQEALL 203

Query: 184 AGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAI 218
            GL +  VP  +L E   R+       +IA  S  
Sbjct: 204 HGLLSKVVPEAELQEETMRI-----ARKIASLSRP 233

>2f6q_A Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxisomes, fatty acid metabolism, STR genomics, structural genomics consortium, SGC; 1.95A {Homo sapiens} SCOP: c.14.1.3 Length = 280

 Score =  101 bits (253), Expect = 1e-24
 Identities = 36/196 (18%), Positives = 78/196 (39%), Gaps = 6/196 (3%)

Query: 7   KNPDEQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVG 66
           ++   + ++      +  +  NRP++ N I++++   +   L+   KDD + + ++ G G
Sbjct: 21  QSMGFETLVVTSEDGITKIMFNRPKKKNAINTEMYHEIMRALKAASKDD-SIITVLTGNG 79

Query: 67  RAFSAGGDLKMFYDGRNSKDSCLEVVYRMYW--LCHHIHTYKKTQVALAHGITMGGGASL 124
             +S+G DL  F D              +           + K  +A+ +G  +G   +L
Sbjct: 80  DYYSSGNDLTNFTDIPPGGVEEKAKNNAVLLREFVGCFIDFPKPLIAVVNGPAVGISVTL 139

Query: 125 MVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHL--GEFLALTGARLNGKELV 182
           +        +++  F TP + +G   +   S+   ++       E + + G +L   E  
Sbjct: 140 LGLFDAVYASDRATFHTPFSHLGQSPEGCSSYTFPKIMSPAKATE-MLIFGKKLTAGEAC 198

Query: 183 AAGLATHFVPSEKLPE 198
           A GL T   P     +
Sbjct: 199 AQGLVTEVFPDSTFQK 214

>3qxi_A Enoyl-COA hydratase ECHA1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.20A {Mycobacterium marinum} Length = 265

 Score =   99 bits (250), Expect = 2e-24
 Identities = 49/192 (25%), Positives = 76/192 (39%), Gaps = 14/192 (7%)

Query: 9   PDEQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRA 68
             E  VL E+   + ++T+NRP+  N +++ V   LA+ +++ + D    + I+ G G +
Sbjct: 12  DTEPEVLVEQRDRILIITINRPKAKNSVNAAVSRALADAMDRLDADAGLSVGILTGAGGS 71

Query: 69  FSAGGDLKMFYDGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPL 128
           F AG DLK F  G N     + V  R            K  +A   G  + GG  L +  
Sbjct: 72  FCAGMDLKAFARGEN-----VVVEGRGLGF--TERPPAKPLIAAVEGYALAGGTELALAT 124

Query: 129 KFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHLGEFLA----LTGARLNGKELVAA 184
              V    + F  PE   G     G      RLP  +   +A    LTG  L+ +   A 
Sbjct: 125 DLIVAARDSAFGIPEVKRGLVAGGGGLL---RLPERIPYAIAMELALTGDNLSAERAHAL 181

Query: 185 GLATHFVPSEKL 196
           G+          
Sbjct: 182 GMVNVLAEPGAA 193

>3qre_A Enoyl-COA hydratase, ECHA12_1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.40A {Mycobacterium marinum M} Length = 298

 Score =  100 bits (251), Expect = 3e-24
 Identities = 41/200 (20%), Positives = 72/200 (36%), Gaps = 11/200 (5%)

Query: 8   NPDEQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGR 67
           +  + V+     G V ++T NR  +LN     + +     +++ E D   +++++ G GR
Sbjct: 26  DAQDAVLYEATPGGVAIITFNRADRLNAWGPDLAAGFYAAIDRAEADPGIRVIVLTGRGR 85

Query: 68  AFSAGGDLKMFYDGRNSKDSCLEVVYRMYW------LCHHIHTYKKTQVALAHGITMGGG 121
            F AG  L           +  +               H +   +K  +A  +G  +G G
Sbjct: 86  GFCAGAYLGSADAAAGYDKTMAKAKDANLADLVGERPPHFVTMLRKPVIAAINGPCVGIG 145

Query: 122 ASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGH---LGEFLALTGARLNG 178
            +  +            F+   A  G   + G S+I  RL      L   L L+G     
Sbjct: 146 LTQALMCDVRFAAAGAKFAAVFARRGLIAEFGISWILPRLTSWAVALD--LLLSGRTFLA 203

Query: 179 KELVAAGLATHFVPSEKLPE 198
           +E    GL    V  E+L  
Sbjct: 204 EEAAQLGLVKEVVTPEQLMP 223

>3oc7_A Enoyl-COA hydratase; seattle structural genomics center for infectious disease, S non-pathogenic mycobacterium species, ortholog; 1.50A {Mycobacterium avium} Length = 267

 Score = 99.6 bits (249), Expect = 3e-24
 Identities = 48/209 (22%), Positives = 79/209 (37%), Gaps = 10/209 (4%)

Query: 11  EQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFS 70
           +        G V  +TLN P   N +S+ +VS L + L     D   ++V++   G  F 
Sbjct: 10  DYAGPAATGGPVARLTLNSPHNRNALSTALVSQLHQGLRDASSDPAVRVVVLAHTGGTFC 69

Query: 71  AGGDLKMFYDGRN---SKDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVP 127
           AG DL     G +   + D  +E    M  L   I   +   +A   G    GG  L+  
Sbjct: 70  AGADLSEAGSGGSPSSAYDMAVERAREMAALMRAIVESRLPVIAAIDGHVRAGGFGLVGA 129

Query: 128 LKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHLGEFLALTGARLNGKELVAAGLA 187
              +V   ++ F+  EA IG         +  +L         LTG + + +     GL 
Sbjct: 130 CDIAVAGPRSSFALTEARIGVAPAIISLTLLPKLSARAAARYYLTGEKFDARRAEEIGLI 189

Query: 188 THFVPSEKLPELEKRLIGLNTGDEIAVKS 216
           T  + +E L     +L+      ++   S
Sbjct: 190 T--MAAEDLDAAIDQLV-----TDVGRGS 211

>3rrv_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.45A {Mycobacterium avium subsp} Length = 276

 Score = 99.2 bits (248), Expect = 5e-24
 Identities = 47/185 (25%), Positives = 75/185 (40%), Gaps = 7/185 (3%)

Query: 12  QVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSA 71
             +     G +R++TLNRP  LN ++  +   LA   ++   D  A+  ++ G GRAFSA
Sbjct: 28  TEIDVRADGALRIITLNRPDSLNSVNDDLHVGLARLWQRLTDDPTARAAVITGAGRAFSA 87

Query: 72  GGDLKMFYDGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFS 131
           GGD     +     D   + +     +   +   +   VA  +G  +G G SL+      
Sbjct: 88  GGDFGYLKELSADADLRAKTIRDGREIVLGMARCRIPVVAAVNGPAVGLGCSLVALSDIV 147

Query: 132 VVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHLGEF----LALTGARLNGKELVAAGLA 187
            + E    + P   +G     G        P H+        ALTG R++ +  V  GLA
Sbjct: 148 YIAENAYLADPHVQVGLVAADGGPL---TWPLHISLLLAKEYALTGTRISAQRAVELGLA 204

Query: 188 THFVP 192
            H   
Sbjct: 205 NHVAD 209

>3sll_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.35A {Mycobacterium abscessus} Length = 290

 Score = 99.2 bits (248), Expect = 7e-24
 Identities = 45/196 (22%), Positives = 80/196 (40%), Gaps = 13/196 (6%)

Query: 11  EQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFS 70
             V++      + LVTLNRP ++N ++  V+    + L     D+  + V++ G G+ F 
Sbjct: 23  SFVLVDRPRPEIALVTLNRPERMNAMAFDVMLPFKQMLVDISHDNDVRAVVITGAGKGFC 82

Query: 71  AGGDLKM-----FYDGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLM 125
           +G D K         G       L  +  +  +   +    +  +A  +G  +GGG  L 
Sbjct: 83  SGADQKSAGPIPHIGGLTQPTIALRSMELLDEVILTLRRMHQPVIAAINGAAIGGGLCLA 142

Query: 126 VPLKFSVVTEKTVFSTPEASIGFH-TDCGFSFIHSRLPGHLGEF----LALTGARLNGKE 180
           +     V ++   F     + G   ++ G S+    LP  +G      + LTG  ++  E
Sbjct: 143 LACDVRVASQDAYFRAAGINNGLTASELGLSY---LLPRAIGTSRASDIMLTGRDVDADE 199

Query: 181 LVAAGLATHFVPSEKL 196
               GL +  V SE L
Sbjct: 200 AERIGLVSRKVASESL 215

>3lke_A Enoyl-COA hydratase; nysgrc, target 11251J, structural genomics, PSI-2, protein structure initiative; 1.70A {Bacillus halodurans} Length = 263

 Score = 98.4 bits (246), Expect = 8e-24
 Identities = 45/197 (22%), Positives = 78/197 (39%), Gaps = 11/197 (5%)

Query: 10  DEQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRA- 68
               V  E   +   +TL+ P + N + +++ + L E +     +     +I++   RA 
Sbjct: 2   SLSYVHTEIQNDALYITLDYPEKKNGLDAELGTSLLEAIRAGNNETSIHSIILQSKHRAY 61

Query: 69  FSAGGDLK-MFYDGRNSKDSCLEVVYRMYW-LCHHIHTYKKTQVALAHGITMGGGASLMV 126
           FS+G  L+ +     +  D  L  V  +       I T  K  VAL +G   GGG ++M+
Sbjct: 62  FSSGPRLEDLLICASDQSDVRLREVLHVLNHCVLEIFTSPKVTVALINGYAYGGGFNMML 121

Query: 127 PLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHLGEF----LALTGARLNGKELV 182
                +   +  F      +G   D G S+    LP  +G      L L G     +E +
Sbjct: 122 ACDRRIALRRAKFLENFHKMGISPDLGASY---FLPRIIGYEQTMNLLLEGKLFTSEEAL 178

Query: 183 AAGLATHFVPS-EKLPE 198
             GL      + ++L E
Sbjct: 179 RLGLIQEICENKQELQE 195

>2fbm_A Y chromosome chromodomain protein 1, telomeric IS; acetyltransferase, structural genomics, structural genomics consortium, SGC, unknown function; 2.28A {Homo sapiens} SCOP: c.14.1.3 Length = 291

 Score = 98.9 bits (247), Expect = 9e-24
 Identities = 45/196 (22%), Positives = 79/196 (40%), Gaps = 14/196 (7%)

Query: 11  EQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFS 70
             +V+ +E G  ++V   R  + N ++++V+  +   L     DD +KLV+    G  F 
Sbjct: 23  RDIVVKKEDGFTQIVLSTRSTEKNALNTEVIKEIVNALNSAAADD-SKLVLFSAAGSVFC 81

Query: 71  AGGDLKMFY----DGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMV 126
            G D   F     + RN+    +    + +   +    +KK  V   +G  +G GAS++ 
Sbjct: 82  CGLDFGYFVKHLRNNRNTASLEMVDTIKNFV--NTFIQFKKPIVVSVNGPAIGLGASILP 139

Query: 127 PLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHLGEFLA----LTGARLNGKELV 182
                   EK  F TP  + G   D   S      P  +G+  A    + G +L  +E  
Sbjct: 140 LCDLVWANEKAWFQTPYTTFGQSPDGCSSI---TFPKMMGKASANEMLIAGRKLTAREAC 196

Query: 183 AAGLATHFVPSEKLPE 198
           A GL +    +    +
Sbjct: 197 AKGLVSQVFLTGTFTQ 212

>3pe8_A Enoyl-COA hydratase; emerald biostructures, structural genomics, seattle structur genomics center for infectious disease, ssgcid, lyase; 1.60A {Mycobacterium smegmatis} PDB: 3p85_A* 3qyr_A Length = 256

 Score = 97.3 bits (243), Expect = 2e-23
 Identities = 57/213 (26%), Positives = 85/213 (39%), Gaps = 23/213 (10%)

Query: 10  DEQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAF 69
           D  V+L +    VR +TLNRP+  N +S+++ S     L   + DD   +VIV G    F
Sbjct: 7   DSPVLLVDTTDRVRTLTLNRPQSRNALSAELRSTFFRALSDAQNDDDVDVVIVTGADPVF 66

Query: 70  SAGGDLKMFYDGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLK 129
            AG DLK   D     D           +        K  +   +G  + GG  L +   
Sbjct: 67  CAGLDLKELGDTTELPD-----------ISPKWPDMTKPVIGAINGAAVTGGLELALYCD 115

Query: 130 FSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHLGEFLA----LTGARLNGKELVAAG 185
             + +E   F+   A +G     G S    RLP  +G  LA    LTG  L+ ++ + AG
Sbjct: 116 ILIASENAKFADTHARVGLMPTWGLSV---RLPQKVGVGLARRMSLTGDYLSAQDALRAG 172

Query: 186 LATHFVPSEKLPELEKRLIGLNTGDEIAVKSAI 218
           L T  V  + L    +R+        I   +  
Sbjct: 173 LVTEVVAHDDLLTAARRV-----AASIVGNNQK 200

>4f47_A Enoyl-COA hydratase ECHA19; ssgcid, seattle structural genomics center for infectious DI niaid; 1.75A {Mycobacterium marinum} Length = 278

 Score = 97.6 bits (244), Expect = 2e-23
 Identities = 48/195 (24%), Positives = 76/195 (38%), Gaps = 10/195 (5%)

Query: 8   NPDEQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGR 67
                  L E+ G+  +VT+NRP + N +S +++ ++ E  ++ + D   +  I+ G G 
Sbjct: 16  GESGPDALVEQRGHTLIVTMNRPSRRNALSGEMMQIMVEAWDRVDNDPDIRCCILTGAGG 75

Query: 68  AFSAGGDLKMFYDGRNSKDSCLEVVYRMYWLCH--HIHTYKKTQVALAHGITMGGGASLM 125
            F AG DLK         DS  +  Y    +         KK  +A   G  + GG  ++
Sbjct: 76  YFCAGMDLKAATKK-PPGDSFKDGSYDPSRIDALLKGRRLKKPLIAAVEGPAIAGGTEIL 134

Query: 126 VPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHLGEFLA----LTGARLNGKEL 181
                 V  E   F   EA    +   G +    RL   +   +A    LTG  +   E 
Sbjct: 135 QGTDIRVAAESAKFGISEAKWSLYPMGGSAV---RLVRQIPYTVACDLLLTGRHITAAEA 191

Query: 182 VAAGLATHFVPSEKL 196
              GL  H VP  + 
Sbjct: 192 KEMGLVGHVVPDGQA 206

>3he2_A Enoyl-COA hydratase ECHA6; fatty acid metabolism, lipid metabolism, lyase, structural genomics; HET: PGE; 2.30A {Mycobacterium tuberculosis} Length = 264

 Score = 96.9 bits (242), Expect = 3e-23
 Identities = 43/225 (19%), Positives = 81/225 (36%), Gaps = 18/225 (8%)

Query: 8   NPDEQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGR 67
                ++   +   V  + L RP + N ++S++V  L + + K   D  A+ +++ G G 
Sbjct: 17  QGPGSMIGITQAEAVLTIELQRPERRNALNSQLVEELTQAIRK-AGDGSARAIVLTGQGT 75

Query: 68  AFSAGGDLKMFYDGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVP 127
           AF AG DL       +  D  +E+          +       V   +G  +G G  L + 
Sbjct: 76  AFCAGADLSGDAFAADYPDRLIELHKA-------MDASPMPVVGAINGPAIGAGLQLAMQ 128

Query: 128 LKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHLGEF----LALTGARLNGKELVA 183
               VV     F  P +  G   D        RL   +G      + L+  +L  +  + 
Sbjct: 129 CDLRVVAPDAFFQFPTSKYGLALDNWSIR---RLSSLVGHGRARAMLLSAEKLTAEIALH 185

Query: 184 AGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLD 228
            G+A               +  L     +A++ A    ++D  ++
Sbjct: 186 TGMANRIGTLADAQAWAAEIARLAP---LAIQHAKRVLNDDGAIE 227

>2j5i_A P-hydroxycinnamoyl COA hydratase/lyase; vanillin, aldolase, crotonase, coenzyme-A; 1.8A {Pseudomonas fluorescens} PDB: 2j5i_B 2vss_A* 2j5i_I 2vss_F* 2vsu_A* 2vss_E* 2vsu_F* 2vsu_E* 2vsu_C* Length = 276

 Score = 96.9 bits (242), Expect = 3e-23
 Identities = 50/212 (23%), Positives = 89/212 (41%), Gaps = 15/212 (7%)

Query: 14  VLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGG 73
           V  E    +  V LNRP + N +S  +   + + LE  E+D  A ++++ G G A++AG 
Sbjct: 11  VKVEIEDGIAFVILNRPEKRNAMSPTLNREMIDVLETLEQDPAAGVLVLTGAGEAWTAGM 70

Query: 74  DLKMFYDGRNSKDSCLEVVYR---MYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKF 130
           DLK ++   ++    L+   R     W    +  Y K  +A+ +G   GGG S +V    
Sbjct: 71  DLKEYFREVDAGPEILQEKIRREASQWQWKLLRMYAKPTIAMVNGWCFGGGFSPLVACDL 130

Query: 131 SVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHLGEFLA----LTGARLNGKELVAAGL 186
           ++  ++  F   E + G       S     +   +G   +    +TG    G++    GL
Sbjct: 131 AICADEATFGLSEINWGIPPGNLVS---KAMADTVGHRQSLMYIMTGKTFGGQKAAEMGL 187

Query: 187 ATHFVPSEKLPELEKRLIGLNTGDEIAVKSAI 218
               VP  +L E+   L        +  K+ +
Sbjct: 188 VNESVPLAQLREVTIEL-----ARNLLEKNPV 214

>3r6h_A Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium marinum, structura genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium marinum M} Length = 233

 Score = 96.1 bits (240), Expect = 3e-23
 Identities = 34/189 (17%), Positives = 66/189 (34%), Gaps = 11/189 (5%)

Query: 14  VLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGG 73
           V       + ++ ++  + +NV+   +   L E ++  ++D+    +++ G  R FS G 
Sbjct: 7   VTYTHDDAIGVIRMDDGK-VNVLGPTMQQALNEAIDAADRDN-VGALVIAGNHRVFSGGF 64

Query: 74  DLKMFYDGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVV 133
           DLK+   G       ++++   + L + + +Y K  V    G  +  GA L+      V 
Sbjct: 65  DLKVLTSG--EAKPAIDMLRGGFELSYRLLSYPKPVVIACTGHAIAMGAFLLCSGDHRVA 122

Query: 134 TEKTVFSTPEASIGFHTDCGFSFIHSRLPGHLGEFLA----LTGARLNGKELVAAGLATH 189
                    E +IG             L   L                G+  +AAG    
Sbjct: 123 AHAYNVQANEVAIGMTIPYAAME---VLKLRLTPSAYQQAAGLAKTFFGETALAAGFIDE 179

Query: 190 FVPSEKLPE 198
               E +  
Sbjct: 180 ISLPEVVLS 188

>2gtr_A CDY-like, chromodomain Y-like protein; structural genomics, structural genomics consortium, SGC, unknown function; 1.90A {Homo sapiens} PDB: 2fw2_A Length = 261

 Score = 96.5 bits (241), Expect = 4e-23
 Identities = 41/196 (20%), Positives = 77/196 (39%), Gaps = 14/196 (7%)

Query: 11  EQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFS 70
             +V+ ++ G   ++   +  + N ++ +V+  +   L     DD +KLV++  VG  F 
Sbjct: 5   RDIVVRKQDGFTHILLSTKSSENNSLNPEVMREVQSALSTAAADD-SKLVLLSAVGSVFC 63

Query: 71  AGGDLKMF----YDGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMV 126
            G D   F     D R  + + +    R +   +    +KK  +   +G  +G GAS++ 
Sbjct: 64  CGLDFIYFIRRLTDDRKRESTKMAEAIRNFV--NTFIQFKKPIIVAVNGPAIGLGASILP 121

Query: 127 PLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHLGEF----LALTGARLNGKELV 182
                   EK  F TP  + G   D   +      P  +G      + L+G +L  +E  
Sbjct: 122 LCDVVWANEKAWFQTPYTTFGQSPDGCSTV---MFPKIMGGASANEMLLSGRKLTAQEAC 178

Query: 183 AAGLATHFVPSEKLPE 198
             GL +         +
Sbjct: 179 GKGLVSQVFWPGTFTQ 194

>2a7k_A CARB; crotonase, antibiotic, beta-lactam, biosynthetic protein; 2.24A {Pectobacterium carotovorum} SCOP: c.14.1.3 PDB: 2a81_A* Length = 250

 Score = 95.3 bits (238), Expect = 8e-23
 Identities = 45/211 (21%), Positives = 72/211 (34%), Gaps = 15/211 (7%)

Query: 13  VVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVG-RAFSA 71
           +V  E    VR++TL+ P + N  S  + + + + L +   DD  + V+V G   R+FSA
Sbjct: 1   MVFEENSDEVRVITLDHPNKHNPFSRTLETSVKDALARANADDSVRAVVVYGGAERSFSA 60

Query: 72  GGDLKMFYDGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFS 131
           GGD        +  +   E + R+  L   +    K  +A   G  +G G    +     
Sbjct: 61  GGDFNEVKQ-LSRSEDIEEWIDRVIDLYQAVLNVNKPTIAAVDGYAIGMGFQFALMFDQR 119

Query: 132 VVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHLGEFLA----LTGARLNGKELVAAGLA 187
           ++     F  PE   G     G     + L    G             L+    V   L 
Sbjct: 120 LMASTANFVMPELKHGIGCSVG----AAILGFTHGFSTMQEIIYQCQSLDAPRCVDYRLV 175

Query: 188 THFVPSEKLPELEKRLIGLNTGDEIAVKSAI 218
              V S  L +             +A   A 
Sbjct: 176 NQVVESSALLDAAITQ-----AHVMASYPAS 201

>3trr_A Probable enoyl-COA hydratase/isomerase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.09A {Mycobacterium abscessus} Length = 256

 Score = 95.3 bits (238), Expect = 1e-22
 Identities = 49/209 (23%), Positives = 74/209 (35%), Gaps = 20/209 (9%)

Query: 14  VLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGG 73
           VL E+   V L+T+NRP   N ++  V   LA   ++ +      + I+ G G  F AG 
Sbjct: 9   VLIEQRDRVLLITINRPDARNAVNRAVSQGLAAAADQLDSSADLSVAIITGAGGNFCAGM 68

Query: 74  DLKMFYDGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVV 133
           DLK F  G         +  R     +     +K  +A   G  + GG  L++     V 
Sbjct: 69  DLKAFVSGEAV------LSERGLGFTN--VPPRKPIIAAVEGFALAGGTELVLSCDLVVA 120

Query: 134 TEKTVFSTPEASIGFHTDCGFSFIHSRLPGHLGEFLA----LTGARLNGKELVAAGLATH 189
                F  PE   G     G      RLP  +   +A    LTG     ++    G    
Sbjct: 121 GRSAKFGIPEVKRGLVAGAGGLL---RLPNRIPYQVAMELALTGESFTAEDAAKYGFINR 177

Query: 190 FVPSEKLPELEKRLIGLNTGDEIAVKSAI 218
            V   +   L+     L    +I     +
Sbjct: 178 LVDDGQA--LDT---ALELAAKITANGPL 201

>3lao_A Enoyl-COA hydratase/isomerase; alpha-beta sandwich, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.40A {Pseudomonas aeruginosa} Length = 258

 Score = 94.9 bits (237), Expect = 1e-22
 Identities = 42/193 (21%), Positives = 70/193 (36%), Gaps = 8/193 (4%)

Query: 8   NPDEQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGR 67
           N     V  E+ G++ L+ L+R  + N   S +++ LA  + ++E+ ++++  ++   G 
Sbjct: 8   NSGPGRVTREQRGHLFLIGLDRAGKRNAFDSAMLADLALAMGEYERSEESRCAVLFAHGE 67

Query: 68  AFSAGGDLKMFYDGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVP 127
            F+AG DL        +            W         K  V    G     G  LM+ 
Sbjct: 68  HFTAGLDLMELAPKLAASGFRYPDGGVDPWG-VVQPRRSKPLVVAVQGTCWTAGIELMLN 126

Query: 128 LKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHLGEFLA----LTGARLNGKELVA 183
              +V    T F+  E   G     G +    R P   G   A    LTG   +  E + 
Sbjct: 127 ADIAVAARGTRFAHLEVLRGIPPLGGSTV---RFPRAAGWTDAMRYILTGDEFDADEALR 183

Query: 184 AGLATHFVPSEKL 196
             L T  V   + 
Sbjct: 184 MRLLTEVVEPGEE 196

>1uiy_A Enoyl-COA hydratase; lyase, beta-oxidation, crotonase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.85A {Thermus thermophilus} SCOP: c.14.1.3 Length = 253

 Score = 93.4 bits (233), Expect = 5e-22
 Identities = 59/210 (28%), Positives = 89/210 (42%), Gaps = 14/210 (6%)

Query: 14  VLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGG 73
           ++  E G+V +V LN P + N +S ++   L + L+  E D   + V++ G G+AFSAG 
Sbjct: 1   MVQVEKGHVAVVFLNDPERRNPLSPEMALSLLQALDDLEADPGVRAVVLTGRGKAFSAGA 60

Query: 74  DLKMFYDGRN-SKDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSV 132
           DL           +        +  L H ++TY K  VA  +G  + GGA L +     V
Sbjct: 61  DLAFLERVTELGAEENYRHSLSLMRLFHRVYTYPKPTVAAVNGPAVAGGAGLALACDLVV 120

Query: 133 VTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHLGEFLA----LTGARLNGKELVAAGLAT 188
           + E+      E  IGF        +   L   +GE  A    LTG  +  +E  A GL  
Sbjct: 121 MDEEARLGYTEVKIGFV--AA--LVSVILVRAVGEKAAKDLLLTGRLVEAREAKALGLVN 176

Query: 189 HFVPSEKLPELEKRLIGLNTGDEIAVKSAI 218
              P  K  E  K L      +E+A  +  
Sbjct: 177 RIAPPGKALEEAKAL-----AEEVAKNAPT 201

>3r9q_A Enoyl-COA hydratase/isomerase; ssgcid, lyase,isomerase; 2.10A {Mycobacterium abscessus} PDB: 3qka_A Length = 262

 Score = 93.4 bits (233), Expect = 5e-22
 Identities = 45/192 (23%), Positives = 69/192 (35%), Gaps = 11/192 (5%)

Query: 9   PDEQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRA 68
             +  V  E+ G V  V LNRP   N +     + L     +++ D +A + ++ G    
Sbjct: 8   EMQPAVRVEKAGPVTTVILNRPHARNAVDGPTAAALLAAFTEFDADPEASVAVLWGDNGT 67

Query: 69  FSAGGDLKMFYDGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPL 128
           F AG DLK     R ++       +    +        K  +A   G  + GG  L +  
Sbjct: 68  FCAGADLKAMGTDRGNELH----PHGPGPMGPSRLRLSKPVIAAISGHAVAGGIELALWC 123

Query: 129 KFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHLGEFLA----LTGARLNGKELVAA 184
              VV E  V        G     G +    RLP  +G   A    LTG  ++  E +  
Sbjct: 124 DLRVVEEDAVLGVFCRRWGVPLIDGGTI---RLPRLIGHSRAMDLILTGRPVHANEALDI 180

Query: 185 GLATHFVPSEKL 196
           GL    V   + 
Sbjct: 181 GLVNRVVARGQA 192

>2j5g_A ALR4455 protein; enzyme evolution, C-C bond hydrolase, hydrolase, lyase, crotonase, biocatalysis, beta-diketone; 1.46A {Anabaena SP} PDB: 2j5s_A* 2j5g_D Length = 263

 Score = 92.7 bits (231), Expect = 8e-22
 Identities = 32/192 (16%), Positives = 67/192 (34%), Gaps = 12/192 (6%)

Query: 11  EQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFS 70
           E +    +   +  V ++      V + K      +      +D   ++VI+ G G A+ 
Sbjct: 23  ENLHFHRDENGILEVRMHTNGSSLVFTGKTHREFPDAFYDISRDRDNRVVILTGSGDAWM 82

Query: 71  AGGDLKMFYDGRNSKDSCLEVVYRMYW-LCHHIHTYKKTQVALAHGITMGGGASLMVPLK 129
           A  D     D  N ++   +  Y     +  ++   +   ++  +G  +      ++   
Sbjct: 83  AEIDFPSLGDVTNPRE--WDKTYWEGKKVLQNLLDIEVPVISAVNGAALLHS-EYILTTD 139

Query: 130 FSVVTEKTVFS-TPEASIGFHTDCGFSFIHSRLPGHLGEF----LALTGARLNGKELVAA 184
             + +E TVF   P  + G     G   +H   P  LG +       T  +L  ++    
Sbjct: 140 IILASENTVFQDMPHLNAGIVPGDG---VHILWPLALGLYRGRYFLFTQEKLTAQQAYEL 196

Query: 185 GLATHFVPSEKL 196
            +    +P  KL
Sbjct: 197 NVVHEVLPQSKL 208

>3rsi_A Putative enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.00A {Mycobacterium abscessus} Length = 265

 Score = 91.8 bits (229), Expect = 2e-21
 Identities = 58/213 (27%), Positives = 86/213 (40%), Gaps = 13/213 (6%)

Query: 10  DEQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAF 69
             + +L E  G V ++T+NRP + N +S+ +VS  A   ++ + DD  +  I+ G G A+
Sbjct: 7   AARELLVERDGPVVILTMNRPHRRNALSTNMVSQFAAAWDEIDHDDGIRAAILTGAGSAY 66

Query: 70  SAGGDLKMFYDGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLK 129
             GGDL   +  R+     L+       L    HT  K  +A  +G  +GGG  ++    
Sbjct: 67  CVGGDLSDGWMVRDGSAPPLDPATIGKGL-LLSHTLTKPLIAAVNGACLGGGCEMLQQTD 125

Query: 130 FSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHLGEFLA----LTGARLNGKELVAAG 185
             V  E   F  PE   G     G      RL   +    A    LTG  L   E    G
Sbjct: 126 IRVSDEHATFGLPEVQRGLVPGAGSMV---RLKRQIPYTKAMEMILTGEPLTAFEAYHFG 182

Query: 186 LATHFVPSEKLPELEKRLIGLNTGDEIAVKSAI 218
           L  H VP+     L+K     +  D I     +
Sbjct: 183 LVGHVVPAGTA--LDK---ARSLADRIVRNGPL 210

>1szo_A 6-oxocamphor hydrolase; enzyme-product complex; HET: CAX; 1.90A {Rhodococcus SP} SCOP: c.14.1.3 PDB: 1o8u_A Length = 257

 Score = 90.4 bits (225), Expect = 5e-21
 Identities = 39/190 (20%), Positives = 69/190 (36%), Gaps = 11/190 (5%)

Query: 12  QVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSA 71
           + +  E  G V LVT++   +  V +S     LA        D + K+VI+ G G +F  
Sbjct: 16  ENIRLERDGGVLLVTVHTEGKSLVWTSTAHDELAYCFHDIACDRENKVVILTGTGPSFCN 75

Query: 72  GGDLKMFYDGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFS 131
             D   F  G  +     E+++    L +++ + +   +A  +G  +     + V     
Sbjct: 76  EIDFTSFNLG--TPHDWDEIIFEGQRLLNNLLSIEVPVIAAVNG-PVTNAPEIPVMSDIV 132

Query: 132 VVTEKTVFS-TPEASIGFHTDCGFSFIHSRLPGHLGEF----LALTGARLNGKELVAAGL 186
           +  E   F   P    G     G        P  LG        LTG  L+ +  +  G 
Sbjct: 133 LAAESATFQDGPHFPSGIVPGDGAHV---VWPHVLGSNRGRYFLLTGQELDARTALDYGA 189

Query: 187 ATHFVPSEKL 196
               +  ++L
Sbjct: 190 VNEVLSEQEL 199

>3r9t_A ECHA1_1; ssgcid, seattle structural genomics center for infectious DI enoyl-COA hydratase, lyase; 1.75A {Mycobacterium avium subsp} PDB: 3r9s_A 3r0o_A Length = 267

 Score = 89.9 bits (224), Expect = 1e-20
 Identities = 51/192 (26%), Positives = 79/192 (41%), Gaps = 11/192 (5%)

Query: 10  DEQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVG-RA 68
           D    L E  GNV ++T+NRP   N I++ V   + + LE+ + D + + V++ G G ++
Sbjct: 7   DAPGALAERRGNVMVITINRPEARNAINAAVSIGVGDALEEAQHDPEVRAVVLTGAGDKS 66

Query: 69  FSAGGDLKMFYDGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPL 128
           F AG DLK             +     +   +  H   K  +A  +G  +GGG  L +  
Sbjct: 67  FCAGADLKAIARR--ENLYHPDHPEWGFAG-YVRHFIDKPTIAAVNGTALGGGTELALAS 123

Query: 129 KFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHLGEFLA----LTGARLNGKELVAA 184
              V  E+  F  PE   G     G  F   R+   L   +A    LTG  L+       
Sbjct: 124 DLVVADERAQFGLPEVKRGLIAAAGGVF---RIAEQLPRKVAMRLLLTGEPLSAAAARDW 180

Query: 185 GLATHFVPSEKL 196
           GL    V +  +
Sbjct: 181 GLINEVVEAGSV 192

>1dci_A Dienoyl-COA isomerase; lyase; 1.50A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2vre_A Length = 275

 Score = 89.2 bits (222), Expect = 2e-20
 Identities = 53/224 (23%), Positives = 82/224 (36%), Gaps = 25/224 (11%)

Query: 11  EQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFS 70
           E + +     +V  V LNRP + N ++      L E  +K  KD   + V+V G G+ F+
Sbjct: 3   ESIQVTSAQKHVLHVQLNRPEKRNAMNRAFWRELVECFQKISKDSDCRAVVVSGAGKMFT 62

Query: 71  AGGDLKMFYDGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALA----------HGITMGG 120
           +G DL                    Y L   I  Y+KT   +           HG  +GG
Sbjct: 63  SGIDLMDMASDILQPPGDDVARIAWY-LRDLISRYQKTFTVIEKCPKPVIAAIHGGCIGG 121

Query: 121 GASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHLGEF-----LALTGAR 175
           G  L+        T+   F   E  +G   D G      RLP  +G       L  T  +
Sbjct: 122 GVDLISACDIRYCTQDAFFQVKEVDVGLAADVGTL---QRLPKVIGNRSLVNELTFTARK 178

Query: 176 LNGKELVAAGLATHFVPS-EKLPELEKRLIGLNTGDEIAVKSAI 218
           +   E + +GL +   P  + +  L           +I+ KS +
Sbjct: 179 MMADEALDSGLVSRVFPDKDVM--LNA---AFALAADISSKSPV 217

>2pbp_A Enoyl-COA hydratase subunit I; B-oxidation, structural genomics, NPPSFA, nationa on protein structural and functional analyses; 1.80A {Geobacillus kaustophilus} PDB: 2qq3_A Length = 258

 Score = 88.3 bits (220), Expect = 3e-20
 Identities = 48/209 (22%), Positives = 94/209 (44%), Gaps = 16/209 (7%)

Query: 14  VLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGG 73
           +   + G V ++ L RP  LN +S ++V+ +   +E ++++++ +++++ G GRAF+AG 
Sbjct: 7   IAARQEGAVGIIELARPDVLNALSRQMVAEIVAAVEAFDRNEKVRVIVLTGRGRAFAAGA 66

Query: 74  DLKMFYDGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVV 133
           D++      +       +     W    +   K   +A  +G+ +GGG  L +     V 
Sbjct: 67  DIQEMAK--DDPIRLEWLNQFADW--DRLSIVKTPMIAAVNGLALGGGFELALSCDLIVA 122

Query: 134 TEKTVFSTPEASIGFHTDCGFSFIHSRLPGHLGEFLA----LTGARLNGKELVAAGLATH 189
           +    F  PE ++G     G +    RL   +G   A     TGAR++ KE    G+   
Sbjct: 123 SSAAEFGFPEVNLGVMPGAGGTQ---RLTKLIGPKRALEWLWTGARMSAKEAEQLGIVNR 179

Query: 190 FVPSEKLPELEKRLIGLNTGDEIAVKSAI 218
            V  E L  +E+    +     +A +  +
Sbjct: 180 VVSPELL--MEE---TMRLAGRLAEQPPL 203

>3tlf_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, otholog; 2.15A {Mycobacterium avium subsp} Length = 274

 Score = 88.0 bits (219), Expect = 6e-20
 Identities = 50/226 (22%), Positives = 84/226 (37%), Gaps = 20/226 (8%)

Query: 4   GVVKNPDEQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVK 63
           G +       +  E  G+   +TLNRP  LN +S  +++ L     + E DD+  L++V 
Sbjct: 3   GSMPVDSFDTIKYEVDGHTATITLNRPDALNALSPHMITELRAAYHEAENDDRVWLLVVT 62

Query: 64  GVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYW-----LCHHIHTYKKTQVALAHGITM 118
           G GRAF +G D+K   +          +     W           T  K  +   +GI  
Sbjct: 63  GTGRAFCSGADVKEIPEDGKVIYERPYLSTYDQWEAPQEGTPPFRTMAKPVLTAVNGICC 122

Query: 119 GGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHLGEFLA----LTGA 174
           G G   +      + +E+  F  P  SIG            R+   L   +A    L G 
Sbjct: 123 GAGMDWVTTTDIVIASEQATFFDPHVSIGLVAGRE----LVRVSRVLPRSIALRMALMGK 178

Query: 175 --RLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAI 218
             R++ +     GL +  V  ++L E    +      D +   + +
Sbjct: 179 HERMSAQRAYELGLISEIVEHDRLLERAHEI-----ADIVNSNAPL 219

>3moy_A Probable enoyl-COA hydratase; ssgcid, seattle structural genomics center for infectious DI enoyl COA, actinobacteria, lyase; 1.50A {Mycobacterium smegmatis} Length = 263

 Score = 86.8 bits (216), Expect = 1e-19
 Identities = 48/212 (22%), Positives = 82/212 (38%), Gaps = 16/212 (7%)

Query: 11  EQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFS 70
             +     +  V L+ L+RP  LN ++  + + + +    ++ D +   ++V G  RAF+
Sbjct: 9   TTIATSRPVAGVGLIRLDRPDALNALNQTLEAEVLDAARDFDADLEIGAIVVTGSERAFA 68

Query: 71  AGGDLKMFYDGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKF 130
           AG D+        +     E      W    +   +K  VA   G  +GGG  L +    
Sbjct: 69  AGADIAEMVT--LTPHQARERNLLSGW--DSLTQVRKPIVAAVAGYALGGGCELAMLCDL 124

Query: 131 SVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHLGEFLA----LTGARLNGKELVAAGL 186
            +  +   F  PE ++G     G +    RL   +G+  A    LTG  L  +E    GL
Sbjct: 125 VIAADTARFGQPEITLGILPGLGGT---QRLTRAVGKAKAMDLCLTGRSLTAEEAERVGL 181

Query: 187 ATHFVPSEKLPELEKRLIGLNTGDEIAVKSAI 218
            +  VP+  L +    +        IA  S  
Sbjct: 182 VSRIVPAADLLDEALAV-----AQRIARMSRP 208

>3h81_A Enoyl-COA hydratase ECHA8; niaid, decode, infectious disease, MPCS, fatty acid metaboli metabolism, lyase, structural genomics; 1.80A {Mycobacterium tuberculosis} PDB: 3q0j_A* 3pzk_A 3q0g_A* Length = 278

 Score = 86.9 bits (216), Expect = 1e-19
 Identities = 51/211 (24%), Positives = 89/211 (42%), Gaps = 16/211 (7%)

Query: 12  QVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSA 71
           + +L E    V ++TLNRP+ LN ++S+V++ +     + + D     +I+ G  +AF+A
Sbjct: 25  ETILVERDQRVGIITLNRPQALNALNSQVMNEVTSAATELDDDPDIGAIIITGSAKAFAA 84

Query: 72  GGDLKMFYDGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFS 131
           G D+K   D   +        +   W    +   +   +A   G  +GGG  L +     
Sbjct: 85  GADIKEMAD--LTFADAFTADFFATW--GKLAAVRTPTIAAVAGYALGGGCELAMMCDVL 140

Query: 132 VVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHLGEFLA----LTGARLNGKELVAAGLA 187
           +  +   F  PE  +G     G S    RL   +G+  A    LTG  ++  E   +GL 
Sbjct: 141 IAADTAKFGQPEIKLGVLPGMGGS---QRLTRAIGKAKAMDLILTGRTMDAAEAERSGLV 197

Query: 188 THFVPSEKLPELEKRLIGLNTGDEIAVKSAI 218
           +  VP++ L    +          I+  SA 
Sbjct: 198 SRVVPADDLLTEARAT-----ATTISQMSAS 223

>3ot6_A Enoyl-COA hydratase/isomerase family protein; structural genomics, PSI-2, protein structure initiative; 2.50A {Pseudomonas syringae PV} Length = 232

 Score = 85.4 bits (212), Expect = 2e-19
 Identities = 40/190 (21%), Positives = 69/190 (36%), Gaps = 14/190 (7%)

Query: 14  VLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGG 73
           V       V  +TLN   ++N IS  V+      L++ EKD    +VIV G     S G 
Sbjct: 8   VSYHLDDGVATLTLNNG-KVNAISPDVIIAFNAALDQAEKDR--AIVIVTGQPGILSGGY 64

Query: 74  DLKMFYDGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSV- 132
           DLK+        ++ + +V +   L   + ++    +    G  +  GA L++   + + 
Sbjct: 65  DLKVMTSSA---EAAINLVAQGSTLARRMLSHPFPIIVACPGHAVAKGAFLLLSADYRIG 121

Query: 133 VTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHLGEFLA----LTGARLNGKELVAAGLAT 188
           V         E  IG       + I       L +       +     + +  +AAG   
Sbjct: 122 VAGPFSIGLNEVQIG--MTMHHAGIE-LARDRLRKSAFNRSVINAEMFDPEGAMAAGFLD 178

Query: 189 HFVPSEKLPE 198
             V  E+L  
Sbjct: 179 KVVSVEELQG 188

>3t8b_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.65A {Mycobacterium tuberculosis} PDB: 3t8a_A 1rjm_A* 1rjn_A* 1q52_A 1q51_A Length = 334

 Score = 86.8 bits (215), Expect = 3e-19
 Identities = 45/220 (20%), Positives = 68/220 (30%), Gaps = 29/220 (13%)

Query: 20  GNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGR-------AFSAG 72
                V  NRP   N      V  L   L+         +V++ G G        AF +G
Sbjct: 65  DATVRVAFNRPEVRNAFRPHTVDELYRVLDHARMSPDVGVVLLTGNGPSPKDGGWAFCSG 124

Query: 73  GDLK----MFYDGRNSKDSCLEVVYRMYWLCHH-----IHTYKKTQVALAHGITMGGGAS 123
           GD +      Y   +   +    V R   L        I    K  + L +G   GGG S
Sbjct: 125 GDQRIRGRSGYQYASGDTADTVDVARAGRLHILEVQRLIRFMPKVVICLVNGWAAGGGHS 184

Query: 124 LMVPLKFSVV-TEKTVFSTPEASIGFHTDCGFSFIHSRLPGHLGEFLA----LTGARLNG 178
           L V    ++   E   F   +A +G       S   + L   +G+  A      G     
Sbjct: 185 LHVVCDLTLASREYARFKQTDADVGSFDGGYGS---AYLARQVGQKFAREIFFLGRTYTA 241

Query: 179 KELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAI 218
           +++   G         +L  +  +        EI  KS  
Sbjct: 242 EQMHQMGAVNAVAEHAELETVGLQW-----AAEINAKSPQ 276

>3pea_A Enoyl-COA hydratase/isomerase family protein; structural genomics, center for structural genomics of infec diseases, csgid; HET: FLC PG4; 1.82A {Bacillus anthracis} Length = 261

 Score = 85.2 bits (212), Expect = 4e-19
 Identities = 54/211 (25%), Positives = 86/211 (40%), Gaps = 14/211 (6%)

Query: 12  QVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSA 71
           + +      ++ + TLN     N +SS+V+  + E +++ EKDD  ++V++ G GR FSA
Sbjct: 6   KFLSVRVEDHIAVATLNHA-PANAMSSQVMHDVTELIDQVEKDDNIRVVVIHGEGRFFSA 64

Query: 72  GGDLKMFYDGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFS 131
           G D+K F           E+          +    K  +A  HG  +GGG    +     
Sbjct: 65  GADIKEFTS-VTEAKQATELAQLGQVTFERVEKCSKPVIAAIHGAALGGGLEFAMSCHMR 123

Query: 132 VVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHLGEFLA----LTGARLNGKELVAAGLA 187
             TE      PE ++G       +    RLP ++G+  A    LT   + G E +  GL 
Sbjct: 124 FATESAKLGLPELTLGLIPGFAGTQ---RLPRYVGKAKACEMMLTSTPITGAEALKWGLV 180

Query: 188 THFVPSEKLPELEKRLIGLNTGDEIAVKSAI 218
                 E    L+     L    +IA KS  
Sbjct: 181 NGVFAEETF--LDD---TLKVAKQIAGKSPA 206

>3kqf_A Enoyl-COA hydratase/isomerase family protein; IDP02329, structural genomic for structural genomics of infectious diseases, csgid; HET: MSE; 1.80A {Bacillus anthracis} Length = 265

 Score = 84.1 bits (209), Expect = 9e-19
 Identities = 52/213 (24%), Positives = 89/213 (41%), Gaps = 15/213 (7%)

Query: 11  EQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVG-RAF 69
           + + +     +V  ++LNR RQ N +S  ++  L   L +  ++   ++VI+ G G +AF
Sbjct: 8   QNISVDYATPHVVKISLNRERQANSLSLALLEELQNILTQINEEANTRVVILTGAGEKAF 67

Query: 70  SAGGDLKMFYDGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLK 129
            AG DLK       +++     V  +      +    +  +A  +GI +GGG  L +   
Sbjct: 68  CAGADLKERAG--MNEEQVRHAVSMIRTTMEMVEQLPQPVIAAINGIALGGGTELSLACD 125

Query: 130 FSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHLGEFLA----LTGARLNGKELVAAG 185
           F +  E       E ++      G +    RLP  +G   A     TG R++ +E    G
Sbjct: 126 FRIAAESASLGLTETTLAIIPGAGGT---QRLPRLIGVGRAKELIYTGRRISAQEAKEYG 182

Query: 186 LATHFVPSEKLPELEKRLIGLNTGDEIAVKSAI 218
           L    VP   L   EK    +   ++IA    I
Sbjct: 183 LVEFVVPVHLL--EEK---AIEIAEKIASNGPI 210

>3hin_A Putative 3-hydroxybutyryl-COA dehydratase; structural genomics, protein structure INI NEW YORK structural genomix research consortium; 2.00A {Rhodopseudomonas palustris} Length = 275

 Score = 84.1 bits (209), Expect = 1e-18
 Identities = 50/214 (23%), Positives = 87/214 (40%), Gaps = 16/214 (7%)

Query: 9   PDEQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRA 68
            D   ++ + +G V  + LNRP++ N ++  +++ L + L   +  DQ + V++ G+G  
Sbjct: 13  ADPSTLVVDTVGPVLTIGLNRPKKRNALNDGLMAALKDCLT--DIPDQIRAVVIHGIGDH 70

Query: 69  FSAGGDLKMFYDGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPL 128
           FSAG DL    +        L      + +   I   +   +A   G  +GGG  L    
Sbjct: 71  FSAGLDLSELRE--RDATEGLVHSQTWHRVFDKIQYCRVPVIAALKGAVIGGGLELACAA 128

Query: 129 KFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHLGEFLA----LTGARLNGKELVAA 184
              V      ++ PE S G     G S    RLP  +G        LTG   +  E V  
Sbjct: 129 HIRVAEASAYYALPEGSRGIFVGGGGS---VRLPRLIGVARMADMMLTGRVYSAAEGVVH 185

Query: 185 GLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAI 218
           G + + + +      +K    L  G+ +A  + +
Sbjct: 186 GFSQYLIENGSA--YDK---ALELGNRVAQNAPL 214

>1mj3_A Enoyl-COA hydratase, mitochondrial; homohexamer, lyase; HET: HXC; 2.10A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2dub_A* 1dub_A* 1ey3_A* 2hw5_A* Length = 260

 Score = 82.6 bits (205), Expect = 3e-18
 Identities = 59/206 (28%), Positives = 98/206 (47%), Gaps = 16/206 (7%)

Query: 17  EEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLK 76
            +  +V L+ LNRP+ LN + + ++  L + LE +E+D     +++ G  +AF+AG D+K
Sbjct: 12  GKNSSVGLIQLNRPKALNALCNGLIEELNQALETFEEDPAVGAIVLTGGEKAFAAGADIK 71

Query: 77  MFYDGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEK 136
              +   +   C    +  +W   HI   KK  +A  +G  +GGG  L +        EK
Sbjct: 72  EMQN--RTFQDCYSGKFLSHW--DHITRIKKPVIAAVNGYALGGGCELAMMCDIIYAGEK 127

Query: 137 TVFSTPEASIGFHTDCGFSFIHSRLPGHLGEFLA----LTGARLNGKELVAAGLATHFVP 192
             F  PE  +G     G +    RL   +G+ LA    LTG R++ ++   AGL +   P
Sbjct: 128 AQFGQPEILLGTIPGAGGT---QRLTRAVGKSLAMEMVLTGDRISAQDAKQAGLVSKIFP 184

Query: 193 SEKLPELEKRLIGLNTGDEIAVKSAI 218
            E L  +E+    +   ++IA  S I
Sbjct: 185 VETL--VEE---AIQCAEKIANNSKI 205

>2np9_A DPGC; protein inhibitor complex, oxidoreductase; HET: YE1; 2.45A {Streptomyces toyocaensis} PDB: 2pg8_A* Length = 440

 Score = 84.9 bits (210), Expect = 3e-18
 Identities = 49/236 (20%), Positives = 81/236 (34%), Gaps = 36/236 (15%)

Query: 10  DEQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKG----- 64
           + + V  E    V  +T+ R  +LN    + V  +   ++    D   ++ +++G     
Sbjct: 165 EMEAVHLERRDGVARLTMCRDDRLNAEDGQQVDDMETAVDLALLDPGVRVGLLRGGVMSH 224

Query: 65  ----VGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYW--------------LCHHIHTYK 106
                 R FSAG +LK    G  S    L      Y                  H    +
Sbjct: 225 PRYRGKRVFSAGINLKYLSQGGISLVDFLMRRELGYIHKLVRGVLTNDDRPGWWHSPRIE 284

Query: 107 KTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHLG 166
           K  VA   G  +GGGA L++     + +    FS P A  G          + RL    G
Sbjct: 285 KPWVAAVDGFAIGGGAQLLLVFDRVLASSDAYFSLPAAKEGIIPGAA----NLRLGRFAG 340

Query: 167 EFLA----LTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAI 218
             ++    L G R+  KE  A  L    V  ++L    +R +       +   + +
Sbjct: 341 PRVSRQVILEGRRIWAKEPEARLLVDEVVEPDELDAAIERSL-----TRLDGDAVL 391

>1ef8_A Methylmalonyl COA decarboxylase; lyase; 1.85A {Escherichia coli} SCOP: c.14.1.3 PDB: 1ef9_A* Length = 261

 Score = 82.6 bits (205), Expect = 4e-18
 Identities = 38/214 (17%), Positives = 75/214 (35%), Gaps = 16/214 (7%)

Query: 10  DEQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVG-RA 68
             Q V    I  V ++  N  R+LN +S   +  L + L    + +   +++    G + 
Sbjct: 2   SYQYVNVVTINKVAVIEFNYGRKLNALSKVFIDDLMQALSDLNRPEIRCIILRAPSGSKV 61

Query: 69  FSAGGDLKMFYDGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPL 128
           FSAG D+              +   R       I  + K  +++  G   GG   +++  
Sbjct: 62  FSAGHDIHELPS-GGRDPLSYDDPLRQIT--RMIQKFPKPIISMVEGSVWGGAFEMIMSS 118

Query: 129 KFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHLGEFLA----LTGARLNGKELVAA 184
              +    + FS    ++G   +         L    G  +      T + +  +  +A 
Sbjct: 119 DLIIAASTSTFSMTPVNLGVPYNLVGI---HNLTRDAGFHIVKELIFTASPITAQRALAV 175

Query: 185 GLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAI 218
           G+  H V  E+L   +     L     I+ K+ +
Sbjct: 176 GILNHVVEVEEL--EDF---TLQMAHHISEKAPL 204

>1hzd_A AUH, AU-binding protein/enoyl-COA hydratase; RNA-binding protein,enoyl-COA hydratase, riken structural genomics/proteomics initiative, RSGI; 2.20A {Homo sapiens} SCOP: c.14.1.3 PDB: 2zqq_A 2zqr_A Length = 272

 Score = 80.7 bits (200), Expect = 2e-17
 Identities = 49/227 (21%), Positives = 87/227 (38%), Gaps = 27/227 (11%)

Query: 6   VKNPDEQVV--LGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVK 63
           +K  DE  V  L EE   + ++ +NR    N +S  ++ +L++ ++  + D + + +I++
Sbjct: 4   MKTEDELRVRHLEEENRGIVVLGINRAYGKNSLSKNLIKMLSKAVDALKSDKKVRTIIIR 63

Query: 64  GVG-RAFSAGGDLKMFYDGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGA 122
                 F AG DLK       S       V ++  + + I       +A   G+ +GGG 
Sbjct: 64  SEVPGIFCAGADLKERAK--MSSSEVGPFVSKIRAVINDIANLPVPTIAAIDGLALGGGL 121

Query: 123 SLMVPLKFSVVTEKTVFSTPEASIGFH-----TDCGFSFIHSRLPGHLGEFLA----LTG 173
            L +     V          E  +        T         RLP  +G  LA     + 
Sbjct: 122 ELALACDIRVAASSAKMGLVETKLAIIPGGGGT--------QRLPRAIGMSLAKELIFSA 173

Query: 174 ARLNGKELVAAGLATHFVPSEKLPE--LEKRLIGLNTGDEIAVKSAI 218
             L+GKE  A GL +H +   +  +    K    L+   E   +  +
Sbjct: 174 RVLDGKEAKAVGLISHVLEQNQEGDAAYRK---ALDLAREFLPQGPV 217

>3m6n_A RPFF protein; enoyl-COA hydratase, lyase; 1.80A {Xanthomonas campestris PV} PDB: 3m6m_A Length = 305

 Score = 80.2 bits (198), Expect = 4e-17
 Identities = 39/229 (17%), Positives = 75/229 (32%), Gaps = 31/229 (13%)

Query: 14  VLGEEIGNVRLVTLNRPRQLNV----ISSKVVSLLAEYL-----EKWEKDDQAKLVIVKG 64
           ++ E   +V  + ++    +N      S+++V  +  Y              A  V++  
Sbjct: 34  IIEEPQRDVYWIHMHADLAINPGRACFSTRLVDDITGYQTNLGQRLNTAGVLAPHVVLAS 93

Query: 65  VGRAFSAGGDLKMFYDGRNSKDSCLEVVY-----RMYWLCHHIHTYKKTQVALAHGITMG 119
               F+ GGDL +F       D    + Y     R     H     +   +AL  G  +G
Sbjct: 94  DSDVFNLGGDLALFCQLIREGDRARLLDYAQRCVRGVHAFHVGLGARAHSIALVQGNALG 153

Query: 120 GGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFI-----HSRLPGHLGEFLA---- 170
           GG    +     +  E  +   PE                   +S +   +   LA    
Sbjct: 154 GGFEAALSCHTIIAEEGVMMGLPEVLFD--------LFPGMGAYSFMCQRISAHLAQKIM 205

Query: 171 LTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIE 219
           L G   + ++L+  GL    VP  +     +++I  +     A  +  +
Sbjct: 206 LEGNLYSAEQLLGMGLVDRVVPRGQGVAAVEQVIRESKRTPHAWAAMQQ 254

>3t89_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.95A {Escherichia coli} PDB: 3t88_A 3h02_A 2iex_A Length = 289

 Score = 79.2 bits (196), Expect = 8e-17
 Identities = 47/207 (22%), Positives = 82/207 (39%), Gaps = 19/207 (9%)

Query: 20  GNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVG-RAFSAGGDLKMF 78
             +  +T+NRP+  N      V  + + L     DD   ++I+ G G +AF +GGD K+ 
Sbjct: 36  DGIAKITINRPQVRNAFRPLTVKEMIQALADARYDDNIGVIILTGAGDKAFCSGGDQKVR 95

Query: 79  YDGRNSKDSCLEVVYRMYWLCHH--IHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEK 136
             G          V+ +  L     I T  K  VA+  G ++GGG  L +    ++  + 
Sbjct: 96  --GDYGGYKDDSGVHHLNVLDFQRQIRTCPKPVVAMVAGYSIGGGHVLHMMCDLTIAADN 153

Query: 137 TVFSTPEASIGFHTDCGF-SFIHSRLPGHLGEFLA----LTGARLNGKELVAAGLATHFV 191
            +F      +G   D G+ +   S +   +G+  A        + + K+ +  GL    V
Sbjct: 154 AIFGQTGPKVGS-FDGGWGA---SYMARIVGQKKAREIWFLCRQYDAKQALDMGLVNTVV 209

Query: 192 PSEKLPELEKRLIGLNTGDEIAVKSAI 218
           P   L +   R        E+   S +
Sbjct: 210 PLADLEKETVRW-----CREMLQNSPM 231

>2uzf_A Naphthoate synthase; lyase, menaquinone biosynthesis; HET: CAA; 2.9A {Staphylococcus aureus} Length = 273

 Score = 78.8 bits (195), Expect = 8e-17
 Identities = 47/210 (22%), Positives = 77/210 (36%), Gaps = 14/210 (6%)

Query: 14  VLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVG-RAFSAG 72
           +  E    +  VT+NRP   N  + K V+ + +   +   D    ++++ G G  AF +G
Sbjct: 15  IKYEFYEGIAKVTINRPEVRNAFTPKTVAEMIDAFSRARDDQNVSVIVLTGEGDLAFCSG 74

Query: 73  GDLKMFYDGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSV 132
           GD K    G             +  L   I    K  +A+  G  +GGG  L V    ++
Sbjct: 75  GDQKKRGHG-GYVGEDQIPRLNVLDLQRLIRIIPKPVIAMVKGYAVGGGNVLNVVCDLTI 133

Query: 133 VTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHLGEFLA----LTGARLNGKELVAAGLAT 188
             +  +F      +G   D G+      L   +G   A        + N +E +  GL  
Sbjct: 134 AADNAIFGQTGPKVGS-FDAGYG--SGYLARIVGHKKAREIWYLCRQYNAQEALDMGLVN 190

Query: 189 HFVPSEKLPELEKRLIGLNTGDEIAVKSAI 218
             VP EK+ +   +        EI   S  
Sbjct: 191 TVVPLEKVEDETVQW-----CKEIMKHSPT 215

>4eml_A Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coenzyme A, lyase; 2.04A {Synechocystis SP} Length = 275

 Score = 77.2 bits (191), Expect = 3e-16
 Identities = 49/216 (22%), Positives = 86/216 (39%), Gaps = 21/216 (9%)

Query: 14  VLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVG------R 67
           +L  + G +  + +NRP + N    + V  L +      +D++  +V++ G G       
Sbjct: 12  ILYYKAGGIAKIVINRPHKRNAFRPQTVFELYDAFCNAREDNRIGVVLLTGAGPHSDGKY 71

Query: 68  AFSAGGDLKMFYDGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVP 127
           AF +GGD  +  +G    D        +  L   I +  K  +AL  G  +GGG  L + 
Sbjct: 72  AFCSGGDQSVRGEG-GYIDDQGTPRLNVLDLQRLIRSMPKVVIALVAGYAIGGGHVLHLV 130

Query: 128 LKFSVVTEKTVFSTPEASIGFHTDCGF-SFIHSRLPGHLGEFLA----LTGARLNGKELV 182
              ++  +  +F      +G   D GF S   S L   +G+  A        + + +E  
Sbjct: 131 CDLTIAADNAIFGQTGPKVGS-FDGGFGS---SYLARIVGQKKAREIWYLCRQYSAQEAE 186

Query: 183 AAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAI 218
             G+    VP ++L E   +        EI  KS +
Sbjct: 187 RMGMVNTVVPVDRLEEEGIQW-----AKEILSKSPL 217

>4di1_A Enoyl-COA hydratase ECHA17; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis, ortholog; 2.25A {Mycobacterium marinum} Length = 277

 Score = 76.5 bits (189), Expect = 5e-16
 Identities = 35/211 (16%), Positives = 65/211 (30%), Gaps = 15/211 (7%)

Query: 12  QVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSA 71
           + V       +  + ++RP   N ++ +V   +    ++  + D    V++ G    FSA
Sbjct: 24  EFVSVVADQGLATLVVSRP-PTNAMTRQVYREIVAAADELGRRDDIGAVVLFGGHEIFSA 82

Query: 72  GGDLKMFYDGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFS 131
           G D+        +                 +    K  VA   G  +G G +L +   + 
Sbjct: 83  GDDMPELRT--LNAPEADTAARVRLEAIDAVAAIPKPTVAAVTGYALGAGLTLALAADWR 140

Query: 132 VVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHLGEFLA----LTGARLNGKELVAAGLA 187
           V  +   F   E   G     G      RL   +G   A     +G   + +E +A GL 
Sbjct: 141 VSGDNVKFGATEILAGLIPGGGGM---GRLTRVVGSSRAKELVFSGRFFDAEEALALGLI 197

Query: 188 THFVPSEKLPELEKRLIGLNTGDEIAVKSAI 218
              V  + + +                    
Sbjct: 198 DDMVAPDDVYDSAVAW-----ARRYLECPPR 223

>1sg4_A 3,2-trans-enoyl-COA isomerase, mitochondrial; crotonase fold; HET: CO8; 1.30A {Homo sapiens} SCOP: c.14.1.3 PDB: 1xx4_A Length = 260

 Score = 76.0 bits (188), Expect = 7e-16
 Identities = 37/213 (17%), Positives = 67/213 (31%), Gaps = 18/213 (8%)

Query: 13  VVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVG-RAFSA 71
           +V  +    V ++    P  +N +S + ++ L   LEK E D   + VI+       FSA
Sbjct: 6   LVEPDAGAGVAVMKFKNPP-VNSLSLEFLTELVISLEKLENDKSFRGVILTSDRPGVFSA 64

Query: 72  GGDLKMFYDGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFS 131
           G DL        S          +  L   ++      V+  +G    GG  + +   + 
Sbjct: 65  GLDLTEMCGR--SPAHYAGYWKAVQELWLRLYQSNLVLVSAINGACPAGGCLVALTCDYR 122

Query: 132 VVTEKTVFST--PEASIGFHTDCGFSFIHSRLPGHLGEFLA----LTGARLNGKELVAAG 185
           ++ +   +     E  +G             L   +G   A      G      E +  G
Sbjct: 123 ILADNPRYCIGLNETQLGIIAPFWLK---DTLENTIGHRAAERALQLGLLFPPAEALQVG 179

Query: 186 LATHFVPSEKLPELEKRLIGLNTGDEIAVKSAI 218
           +    VP E++       I      +       
Sbjct: 180 IVDQVVPEEQVQSTALSAIA-----QWMAIPDH 207

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A* Length = 742

 Score = 78.1 bits (193), Expect = 8e-16
 Identities = 57/313 (18%), Positives = 111/313 (35%), Gaps = 54/313 (17%)

Query: 1   MAQGVVKNPDEQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLV 60
            + G+V              ++ ++ L  P  +N +S  V+  +   L+K   D   K +
Sbjct: 10  HSSGLVPRGSHMAEYLRLPHSLAMIRLCNPP-VNAVSPTVIREVRNGLQKAGSDHTVKAI 68

Query: 61  IVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGG 120
           ++ G    F AG D+  F     +    L  +         I  Y+K  +A   G+ +GG
Sbjct: 69  VICGANGNFCAGADIHGF--SAFTPGLALGSLVDE------IQRYQKPVLAAIQGVALGG 120

Query: 121 GASLMVPL--KFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHLGEFLAL----TGA 174
           G  L + L   + +   K     PE ++G       +     LP  +G  +AL    +G 
Sbjct: 121 G--LELALGCHYRIANAKARVGLPEVTLGILPGARGTQ---LLPRVVGVPVALDLITSGK 175

Query: 175 RLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLN 234
            L+  E +  G+    V S+ +              E A+K A        ++  + +  
Sbjct: 176 YLSADEALRLGILDAVVKSDPV--------------EEAIKFAQ-------KIIDKPIEP 214

Query: 235 KQSIIDECFSKETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGRE 294
           ++       S   +  +     A+  K+  G + P                +RS++   +
Sbjct: 215 RRIFNKPVPSLPNMDSVFAEAIAKVRKQYPGVLAP------------ETC-VRSIQASVK 261

Query: 295 QSLAECLKKEFRL 307
                 +K+E +L
Sbjct: 262 HPYEVGIKEEEKL 274

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A* Length = 715

 Score = 77.7 bits (192), Expect = 1e-15
 Identities = 38/193 (19%), Positives = 70/193 (36%), Gaps = 13/193 (6%)

Query: 20  GNVRLVTLNRPRQ-LNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMF 78
             +  +  +   + +N  +   ++ L + ++  + D   K VIV      F  G D+  F
Sbjct: 15  SGIVELKFDLKGESVNKFNRLTLNELRQAVDAIKADASVKGVIVSSGKDVFIVGADITEF 74

Query: 79  YDGRNSKD-SCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPL--KFSVVTE 135
            +     D   +        +           VA  +GI +GGG  L + L   F V+ +
Sbjct: 75  VENFKLPDAELIAGNLEANKIFSDFEDLNVPTVAAINGIALGGG--LEMCLAADFRVMAD 132

Query: 136 KTVFSTPEASIGFHTDCGFSFIHSRLPGHLGEFLAL----TGARLNGKELVAAGLATHFV 191
                 PE  +G +   G +    RLP  +G   A+    +G     ++ +        V
Sbjct: 133 SAKIGLPEVKLGIYPGFGGTV---RLPRLIGVDNAVEWIASGKENRAEDALKVSAVDAVV 189

Query: 192 PSEKLPELEKRLI 204
            ++KL      LI
Sbjct: 190 TADKLGAAALDLI 202

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana} Length = 725

 Score = 77.7 bits (192), Expect = 1e-15
 Identities = 57/294 (19%), Positives = 102/294 (34%), Gaps = 44/294 (14%)

Query: 21  NVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYD 80
            V ++TL  P  +N +S  V+  L    E+    +  K +++ G    FS G D+  F +
Sbjct: 17  GVAVITLINPP-VNSLSFDVLYNLKSNYEEALSRNDVKAIVITGAKGRFSGGFDISGFGE 75

Query: 81  -GRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPL--KFSVVTEKT 137
             + +          +  +   +   +K  VA   G+ +GGG  L + +     +     
Sbjct: 76  MQKGNVKEPKAGYISIDIITDLLEAARKPSVAAIDGLALGGG--LELAMACHARISAPAA 133

Query: 138 VFSTPEASIGFHTDCGFSFIHSRLPGHLGEFLAL----TGARLNGKELVAAGLATHFVPS 193
               PE  +G     G +    RLP  +G   AL    T   +  +E  + GL    VP 
Sbjct: 134 QLGLPELQLGVIPGFGGTQ---RLPRLVGLTKALEMILTSKPVKAEEGHSLGLIDAVVPP 190

Query: 194 EKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKETVAEIIK 253
            +L                 V +A   ++ D+    +  ++  S  D+        EI+ 
Sbjct: 191 AEL-----------------VTTAR-RWALDIVGRRKPWVSSVSKTDKLPPLGEAREILT 232

Query: 254 SFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRL 307
             +A+  K       P            L   L ++  G        L+KE  +
Sbjct: 233 FAKAQTLKRAPNMKHP------------LMC-LDAIEVGIVSGPRAGLEKEAEV 273

>3gkb_A Putative enoyl-COA hydratase; structural genomics, unknown function, PSI-2, protein struct initiative; 1.80A {Streptomyces avermitilis} Length = 287

 Score = 74.5 bits (184), Expect = 3e-15
 Identities = 39/217 (17%), Positives = 69/217 (31%), Gaps = 20/217 (9%)

Query: 12  QVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVG-RAFS 70
             +       V  + L+ P  +NVI + ++  L   L     D   ++++        F 
Sbjct: 9   STLRVSSEHGVARIILDNP-PVNVIGATMMRELRTVLTTLADDSSVRVIVFSSADPEFFL 67

Query: 71  AGGDLKMFYD---GRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGA--SLM 125
           A  D+++       +    S    V     +   I    +  +    G   GGGA     
Sbjct: 68  AHVDMRIGEKMDALQELAASAPADVNVFQAVGELIRHQPQVTIVKLAGKARGGGAEFVAA 127

Query: 126 VPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHLGEFLA----LTGARLNGKEL 181
             + F    E       EA +G     G +     L G +G   A    LT    + +  
Sbjct: 128 ADMAF-AAAETAGLGQIEALMGIIPGGGGTQ---YLRGRVGRNRALEVVLTADLFDAETA 183

Query: 182 VAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAI 218
            + G     +P+++L E   R+        IA     
Sbjct: 184 ASYGWINRALPADELDEYVDRV-----ARNIAALPDG 215

>2ppy_A Enoyl-COA hydratase; beta-oxidation, fatty acid metabol lyase, structural genomics, NPPSFA; 2.16A {Geobacillus kaustophilus} Length = 265

 Score = 72.5 bits (179), Expect = 1e-14
 Identities = 37/213 (17%), Positives = 70/213 (32%), Gaps = 17/213 (7%)

Query: 12  QVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVG-RAFS 70
           Q +   +   +  + L+   + N    +        ++    D   K+VIV     + FS
Sbjct: 9   QYLTVFKEDGIAEIHLHIN-KSNSYDLEFYKEFNAAIDDIRFDPDIKVVIVMSDVPKFFS 67

Query: 71  AGGDLKMFYDGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKF 130
           AG D+              +           I    +  +A   G T+GGG  + +    
Sbjct: 68  AGADINFLRSA--DPRFKTQFCLFCNETLDKIARSPQVYIACLEGHTVGGGLEMALACDL 125

Query: 131 SVVTEKTV-FSTPEASIGFHTDCGFSFIHSRLPGHLGEFLA----LTGARLNGKELVAAG 185
             + ++      PE S+G     G +    RL   +G   A    +TG  +  +E +  G
Sbjct: 126 RFMGDEAGKIGLPEVSLGVLAGTGGT---QRLARLIGYSRALDMNITGETITPQEALEIG 182

Query: 186 LATHFVPSEKLPELEKRLIGLNTGDEIAVKSAI 218
           L     P  +  E  +         ++A  +  
Sbjct: 183 LVNRVFPQAETRERTREY-----ARKLANSATY 210

>3h0u_A Putative enoyl-COA hydratase; structural genomics, isomerase, PSI-2, protein structure initiative; 1.50A {Streptomyces avermitilis} Length = 289

 Score = 72.6 bits (179), Expect = 1e-14
 Identities = 40/225 (17%), Positives = 63/225 (28%), Gaps = 38/225 (16%)

Query: 12  QVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVG-RAFS 70
           + +     G V   T N P  +N+I  +VV  L   LE+       ++VI        F 
Sbjct: 8   ETIKARLDGTVLSATFNAP-PMNLIGPEVVRDLVALLEELAHPTAPRVVIFDSADADFFF 66

Query: 71  AGGDLKMFYDGRNSKD--SCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGG------- 121
              D+    +   ++   +       +  L   +       +A   G   G G       
Sbjct: 67  PHVDMTKVPE-YTAEAAKAGGPGDASLGMLFRKLSQLPAVTIAKLRGRARGAGSEFLLAC 125

Query: 122 ----ASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHLGEFLA----LTG 173
               AS           E  +   PE  IG     G       L   LG   A    LT 
Sbjct: 126 DMRFAS----------RENAILGQPEVGIGAPPGAGAI---QHLTRLLGRGRALEAVLTS 172

Query: 174 ARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAI 218
           +  +       G     VP  +L E    +        ++     
Sbjct: 173 SDFDADLAERYGWVNRAVPDAELDEFVAGI-----AARMSGFPRD 212

>2w3p_A Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ring cleaving, burkholderia xenovorans LB400 crotonase; 1.50A {Burkholderia xenovorans} Length = 556

 Score = 68.1 bits (166), Expect = 1e-12
 Identities = 34/228 (14%), Positives = 67/228 (29%), Gaps = 31/228 (13%)

Query: 14  VLGEEIGNVRLVTLNRPRQ----------LNVISSKVVSLLAEYLEKWEKDD-QAKLVIV 62
                 G V  + ++              LN     V   L + +++   +  + + V++
Sbjct: 23  WKLSFNGPVATLGIDIAEDGGIRDGYKLKLNSYDLGVDIELHDAIQRIRFEHPEVRTVVL 82

Query: 63  KGVG-RAFSAGGDLKMF--YDGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMG 119
             +  R F +G ++ M          + C         L           +A  +G   G
Sbjct: 83  TSLKDRVFCSGANIFMLGLSTHAWKVNFCKFTNETRNGLEDSSRHSGLKFLAAVNGACAG 142

Query: 120 GGA--SLMVPLKFSVVTEKTVFSTPEAS-IGFHTDCGFSFIHSRLPG--HLGEFLA---- 170
           GG   +L     + V    +  S PE   +G     G     +R+     +    A    
Sbjct: 143 GGYELALACDEIYLVDDRSSSVSLPEVPLLGVLPGTGGL---TRVTDKRKVRHDRADIFC 199

Query: 171 LTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAI 218
                + G+   A  L    V   +  +  +         E+A +S  
Sbjct: 200 TVVEGVRGERAKAWRLVDEVVKPNQFDQAIQARA-----LELAAQSDR 242

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 54.5 bits (130), Expect = 3e-08
 Identities = 74/440 (16%), Positives = 140/440 (31%), Gaps = 92/440 (20%)

Query: 7   KNPDEQVVLGEEIGNVRLVTLNRP-RQLNVISSKVVSLLAEYLEKWEKDDQAKLVIV--- 62
           + P     +  E  + RL   N+   + NV   +    L + L +      AK V++   
Sbjct: 103 RQPSMMTRMYIEQRD-RLYNDNQVFAKYNVSRLQPYLKLRQALLE---LRPAKNVLIDGV 158

Query: 63  KGVGR---AFSAGGDLK---MFYDG--------RNSKDSCLEVVYRMYW--------LCH 100
            G G+   A       K                 NS ++ LE++ ++ +           
Sbjct: 159 LGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSD 218

Query: 101 HIHTYKKTQVALAHGITM-----GGGASLMVPL----------KFSVVTEKTVFSTPEAS 145
           H    K    ++   +            L+V L           F++ + K + +T    
Sbjct: 219 HSSNIKLRIHSIQAELRRLLKSKPYENCLLV-LLNVQNAKAWNAFNL-SCKILLTTRFKQ 276

Query: 146 IGFHTDCGFSFIHSRLPGHL---GEFLALTGARLNGKELVAAGLATHFVPSEKLPELEK- 201
           +   TD    F+ +    H+      + LT      K L+   L       + LP     
Sbjct: 277 V---TD----FLSAATTTHISLDHHSMTLTPD--EVKSLLLKYLD---CRPQDLPREVLT 324

Query: 202 ---RLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKETVAEIIKSFEAE 258
              R + +   + I    A  +  + V  D        +II+   +    AE  K F+  
Sbjct: 325 TNPRRLSI-IAESIRDGLATWDNWKHVNCD-----KLTTIIESSLNVLEPAEYRKMFDRL 378

Query: 259 AGKEGNGWIGP--VLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTIN--ILRA 314
           +    +  I P  +L  +           +  V +  + SL E   KE  ++I    L  
Sbjct: 379 SVFPPSAHI-PTILLSLIWFDVIK--SDVMVVVNKLHKYSLVEKQPKESTISIPSIYLEL 435

Query: 315 IISADIYEGIRALTIEKDNAPK-WDPPTLDKVDDDKVDLVFQPFGEDL-ELQIPENE--- 369
            +  +    +    ++  N PK +D   L     D     +   G  L  ++ PE     
Sbjct: 436 KVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLD--QYFYSHIGHHLKNIEHPERMTLF 493

Query: 370 -----NCRW-DGKYENSAYA 383
                + R+ + K  + + A
Sbjct: 494 RMVFLDFRFLEQKIRHDSTA 513

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.9 bits (100), Expect = 2e-04
 Identities = 38/330 (11%), Positives = 98/330 (29%), Gaps = 91/330 (27%)

Query: 32  QLNVISSKVVSLLAEYLEKWEKDDQAKLV--IVKGVGRAFSAGGDLKMFYDGRNSKDSCL 89
           +      +   +L+ + + +  +   K V  + K +    S   ++        SKD+ +
Sbjct: 10  ETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSI---LSKE-EIDHII---MSKDA-V 61

Query: 90  EVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFH 149
               R++W    + + ++  V       +     L +  KF +   KT    P      +
Sbjct: 62  SGTLRLFWT---LLSKQEEMVQKF----VEE--VLRINYKFLMSPIKTEQRQPSMMTRMY 112

Query: 150 TDCGFSFIHSRLPGHLGEFLALTGARLNGKELVAAGLATHFVPS-EKLPELEKRLIGLNT 208
            +        RL               N  ++     A + V   +   +L + L+ L  
Sbjct: 113 IEQ-----RDRL--------------YNDNQV----FAKYNVSRLQPYLKLRQALLELRP 149

Query: 209 GDEIAV---KSAIEEFSEDVQLDGQSVLNKQSIIDECFSKETVAEIIKSFEAEAGKEGNG 265
              + +     +           G++ +                ++  S++ +   +   
Sbjct: 150 AKNVLIDGVLGS-----------GKTWV--------------ALDVCLSYKVQCKMDFKI 184

Query: 266 -WI--GPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINI------LRAII 316
            W+           +SP  +   L+ +    + +          + + I      LR ++
Sbjct: 185 FWLNLK------NCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLL 238

Query: 317 SADIYEGIRALTIEKDNAPKWDPPTLDKVD 346
            +  YE    L +   N    +    +  +
Sbjct: 239 KSKPYE--NCLLV-LLNV--QNAKAWNAFN 263

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	392
4hdt_A	353	3-hydroxyisobutyryl-COA hydrolase; ssgcid, carniti	100.0
3ju1_A	407	Enoyl-COA hydratase/isomerase family protein; alph	100.0
3bpt_A	363	3-hydroxyisobutyryl-COA hydrolase; coenzyme A, bet	100.0
3hrx_A	254	Probable enoyl-COA hydratase; the spiral fold, the	100.0
4fzw_C	274	1,2-epoxyphenylacetyl-COA isomerase; structural ge	100.0
4fzw_A	258	2,3-dehydroadipyl-COA hydratase; structural genomi	100.0
3kqf_A	265	Enoyl-COA hydratase/isomerase family protein; IDP0	100.0
3gow_A	254	PAAG, probable enoyl-COA hydratase; the spiral fol	100.0
3g64_A	279	Putative enoyl-COA hydratase; alpha-beta structure	100.0
3pea_A	261	Enoyl-COA hydratase/isomerase family protein; stru	100.0
3sll_A	290	Probable enoyl-COA hydratase/isomerase; structural	100.0
3moy_A	263	Probable enoyl-COA hydratase; ssgcid, seattle stru	100.0
3i47_A	268	Enoyl COA hydratase/isomerase (crotonase); structu	100.0
3hin_A	275	Putative 3-hydroxybutyryl-COA dehydratase; structu	100.0
1nzy_A	269	Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogen	100.0
3myb_A	286	Enoyl-COA hydratase; ssgcid, struct genomics, seat	100.0
3rsi_A	265	Putative enoyl-COA hydratase/isomerase; structural	100.0
3p5m_A	255	Enoyl-COA hydratase/isomerase; seattle structural	100.0
3h81_A	278	Enoyl-COA hydratase ECHA8; niaid, decode, infectio	100.0
3swx_A	265	Probable enoyl-COA hydratase/isomerase; structural	100.0
3fdu_A	266	Putative enoyl-COA hydratase/isomerase; structural	100.0
2ej5_A	257	Enoyl-COA hydratase subunit II; structural genomic	100.0
2pbp_A	258	Enoyl-COA hydratase subunit I; B-oxidation, struct	100.0
3tlf_A	274	Enoyl-COA hydratase/isomerase; structural genomics	100.0
2ppy_A	265	Enoyl-COA hydratase; beta-oxidation, fatty acid me	100.0
4f47_A	278	Enoyl-COA hydratase ECHA19; ssgcid, seattle struct	100.0
3qxz_A	265	Enoyl-COA hydratase/isomerase; structural genomics	100.0
3r9t_A	267	ECHA1_1; ssgcid, seattle structural genomics cente	100.0
3qre_A	298	Enoyl-COA hydratase, ECHA12_1; structural genomics	100.0
2vx2_A	287	Enoyl-COA hydratase domain-containing protein 3; i	100.0
1dci_A	275	Dienoyl-COA isomerase; lyase; 1.50A {Rattus norveg	100.0
3lke_A	263	Enoyl-COA hydratase; nysgrc, target 112 structural	100.0
3trr_A	256	Probable enoyl-COA hydratase/isomerase; ssgcid, st	100.0
2j5i_A	276	P-hydroxycinnamoyl COA hydratase/lyase; vanillin,	100.0
3qxi_A	265	Enoyl-COA hydratase ECHA1; structural genomics, se	100.0
2fbm_A	291	Y chromosome chromodomain protein 1, telomeric IS;	100.0
3qk8_A	272	Enoyl-COA hydratase ECHA15; ssgcid, NIH, niaid, SB	100.0
1wz8_A	264	Enoyl-COA hydratase; lyase, crotonase, hexamer, st	100.0
3r9q_A	262	Enoyl-COA hydratase/isomerase; ssgcid, lyase,isome	100.0
1uiy_A	253	Enoyl-COA hydratase; lyase, beta-oxidation, croton	100.0
1ef8_A	261	Methylmalonyl COA decarboxylase; lyase; 1.85A {Esc	100.0
3hp0_A	267	Putative polyketide biosynthesis enoyl-COA hydrata	100.0
3oc7_A	267	Enoyl-COA hydratase; seattle structural genomics c	100.0
3rrv_A	276	Enoyl-COA hydratase/isomerase; structural genomics	100.0
1hzd_A	272	AUH, AU-binding protein/enoyl-COA hydratase; RNA-b	100.0
1mj3_A	260	Enoyl-COA hydratase, mitochondrial; homohexamer, l	100.0
2gtr_A	261	CDY-like, chromodomain Y-like protein; structural	100.0
2uzf_A	273	Naphthoate synthase; lyase, menaquinone biosynthes	100.0
3t89_A	289	1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase	100.0
3pe8_A	256	Enoyl-COA hydratase; emerald biostructures, struct	100.0
4eml_A	275	Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coe	100.0
2f6q_A	280	Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxis	100.0
3gkb_A	287	Putative enoyl-COA hydratase; structural genomics,	100.0
3qmj_A	256	Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid,	100.0
3he2_A	264	Enoyl-COA hydratase ECHA6; fatty acid metabolism,	100.0
3t8b_A	334	1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase	100.0
3lao_A	258	Enoyl-COA hydratase/isomerase; alpha-beta sandwich	100.0
2a7k_A	250	CARB; crotonase, antibiotic, beta-lactam, biosynth	100.0
4di1_A	277	Enoyl-COA hydratase ECHA17; structural genomics, s	100.0
3l3s_A	263	Enoyl-COA hydratase/isomerase family protein; crot	100.0
3isa_A	254	Putative enoyl-COA hydratase/isomerase; structural	100.0
1sg4_A	260	3,2-trans-enoyl-COA isomerase, mitochondrial; crot	100.0
3h0u_A	289	Putative enoyl-COA hydratase; structural genomics,	100.0
2q35_A	243	CURF; crotonase, lyase; 1.65A {Lyngbya majuscula}	100.0
1pjh_A	280	Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral	100.0
2j5g_A	263	ALR4455 protein; enzyme evolution, C-C bond hydrol	100.0
3njd_A	333	Enoyl-COA hydratase; ssgcid, mycobacerium smegmati	100.0
3r6h_A	233	Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium m	100.0
3m6n_A	305	RPFF protein; enoyl-COA hydratase, lyase; 1.80A {X	100.0
3ot6_A	232	Enoyl-COA hydratase/isomerase family protein; stru	100.0
1szo_A	257	6-oxocamphor hydrolase; enzyme-product complex; HE	100.0
3t3w_A	279	Enoyl-COA hydratase; ssgcid, structural genomics,	100.0
2np9_A	440	DPGC; protein inhibitor complex, oxidoreductase; H	100.0
3zwc_A	742	Peroxisomal bifunctional enzyme; beta oxidation pa	100.0
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	100.0
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	100.0
2w3p_A	556	Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ri	100.0
3bf0_A	593	Protease 4; bacterial, hydrolase, inner membrane,	99.85
3rst_A	240	Signal peptide peptidase SPPA; alpha/beta protein	99.8
3viv_A	230	441AA long hypothetical NFED protein; protein-pept	99.77
1y7o_A	218	ATP-dependent CLP protease proteolytic subunit; hy	99.55
2f9y_B	304	Acetyl-coenzyme A carboxylase carboxyl transferas	99.55
2f9i_A	327	Acetyl-coenzyme A carboxylase carboxyl transferase	99.44
2f9y_A	339	Acetyl-COA carboxylase, carboxyltransferase alpha;	99.4
2cby_A	208	ATP-dependent CLP protease proteolytic subunit 1;	98.9
3qwd_A	203	ATP-dependent CLP protease proteolytic subunit; ca	98.52
1yg6_A	193	ATP-dependent CLP protease proteolytic subunit; en	98.48
2f6i_A	215	ATP-dependent CLP protease, putative; structural g	98.42
3p2l_A	201	ATP-dependent CLP protease proteolytic subunit; st	98.34
1tg6_A	277	Putative ATP-dependent CLP protease proteolytic S;	98.27
2w3p_A	556	Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ri	98.04
4gm2_A	205	ATP-dependent CLP protease proteolytic subunit; st	97.92
1pix_A	587	Glutaconyl-COA decarboxylase A subunit; biotin-dep	97.75
2f9i_B	285	Acetyl-coenzyme A carboxylase carboxyl transferase	97.69
3bf0_A	593	Protease 4; bacterial, hydrolase, inner membrane,	97.54
3iav_A	530	Propionyl-COA carboxylase complex B subunit; accas	97.49
3n6r_B	531	Propionyl-COA carboxylase, beta subunit; protein c	97.38
1on3_A	523	Methylmalonyl-COA carboxyltransferase 12S subunit;	97.28
2bzr_A	548	Propionyl-COA carboxylase beta chain 5; fatty acid	97.19
1x0u_A	522	Hypothetical methylmalonyl-COA decarboxylase ALPH;	97.17
3u9r_B	555	MCC beta, methylcrotonyl-COA carboxylase, beta-sub	96.94
1vrg_A	527	Propionyl-COA carboxylase, beta subunit; TM0716, s	96.51
1x0u_A	522	Hypothetical methylmalonyl-COA decarboxylase ALPH;	95.83
3gf3_A	588	Glutaconyl-COA decarboxylase subunit A; sodium ION	95.69
1vrg_A	527	Propionyl-COA carboxylase, beta subunit; TM0716, s	94.55
1pix_A	587	Glutaconyl-COA decarboxylase A subunit; biotin-dep	94.18
1on3_A	523	Methylmalonyl-COA carboxyltransferase 12S subunit;	93.97
2bzr_A	548	Propionyl-COA carboxylase beta chain 5; fatty acid	93.5
3n6r_B	531	Propionyl-COA carboxylase, beta subunit; protein c	90.74
3iav_A	530	Propionyl-COA carboxylase complex B subunit; accas	90.5
3k8x_A	758	Acetyl-COA carboxylase; transferase, carboxyltrans	86.2
2x24_A	793	Acetyl-COA carboxylase; fatty acid biosynthesis, l	84.3
3gf3_A	588	Glutaconyl-COA decarboxylase subunit A; sodium ION	83.87
3u9r_B	555	MCC beta, methylcrotonyl-COA carboxylase, beta-sub	83.79
3k8x_A	758	Acetyl-COA carboxylase; transferase, carboxyltrans	80.34

>4hdt_A 3-hydroxyisobutyryl-COA hydrolase; ssgcid, carnitinyl-COA dehydratase, enoyl-COA hydratase/ISOM mycobacterium thermoresistibIle; 1.60A {Mycobacterium thermoresistibile}

Probab=100.00  E-value=3.6e-79  Score=602.09  Aligned_cols=346  Identities=35%  Similarity=0.608  Sum_probs=310.4

Q ss_pred             CCCCCCCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCC-CccccCCCchhhccCC-C
Q 016290            6 VKNPDEQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVG-RAFSAGGDLKMFYDGR-N   83 (392)
Q Consensus         6 ~~~~~~~~V~~~~~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G-~~FcaG~Dl~~l~~~~-~   83 (392)
                      .++..++.|+++++|+|++||||||+++|+||.+|+.+|.++|+.++.|++||+|||||+| ++||+|+|++++.... .
T Consensus         3 m~t~~~e~vl~e~~~~Va~itLnrP~~~NAl~~~m~~~l~~al~~~~~d~~vr~vvltg~G~~~FcaG~Dl~~~~~~~~~   82 (353)
T 4hdt_A            3 MVTAKNEDVLVNVEGGVGLLTLNRPKAINSLTHGMVTTMAERLAAWENDDSVRAVLLTGAGERGLCAGGDVVAIYHSAKA   82 (353)
T ss_dssp             -----CCSEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEEESSSSBSBCCBCHHHHHHHHHT
T ss_pred             CccCCCCcEEEEEECCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEEeCCCCCEecCcCHHHHhhccch
Confidence            4466678899999999999999999999999999999999999999999999999999999 8999999999987522 1


Q ss_pred             CchhHHHHHHHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcch
Q 016290           84 SKDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG  163 (392)
Q Consensus        84 ~~~~~~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G  163 (392)
                      .......++...++++..|.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|
T Consensus        83 ~~~~~~~~~~~~~~~~~~i~~~~kPvIAav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~iGl~p~~g~~~~l~rl~g  162 (353)
T 4hdt_A           83 DGAEARRFWFDEYRLNAHIGRYPKPYVSIMDGIVMGGGVGVGAHGNVRVVTDTTKMAMPEVGIGFIPDVGGTYLLSRAPG  162 (353)
T ss_dssp             TSHHHHHHHHHHHHHHHHHHHCSSCEEEEECBEEETHHHHHHTTSSEEEECTTCEEECCGGGGTCCCCTTHHHHHHTSST
T ss_pred             hhHHHHHHHHHHHHHHHHHHHCCCCEEEEeECceeecCccccCCcCeeccchhccccCcccccccCCCccceehhhhhhh
Confidence            22334678888899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHh
Q 016290          164 HLGEFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECF  243 (392)
Q Consensus       164 ~~a~~L~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f  243 (392)
                      .++++|+|||++++|+||+++||||+|||+++|++.+.+++.      +.++..+..+...  .+...+...+++|++||
T Consensus       163 ~~a~~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~a~~la~------~~~~~~l~~~~~~--~~~~~l~~~~~~i~~~f  234 (353)
T 4hdt_A          163 KLGLHAALTGAPFSGADAIVMGFADHYVPHDKIDEFTRAVIA------DGVDAALAAHAQE--PPASPLAEQRSWIDECY  234 (353)
T ss_dssp             THHHHHHHHCCCBCHHHHHHHTSCSEECCGGGHHHHHHHHHH------HCHHHHHHHHCBC--CCCCHHHHTHHHHHHHT
T ss_pred             HHHHHHHhcCCCCCHHHHHHcCCCcEEeCHHHHHHHHHHHHH------hchhHHHHHhccc--CCccchHHHHHHHHHHh
Confidence            999999999999999999999999999999999998888854      3456677777654  34566788899999999


Q ss_pred             CcCCHHHHHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhc-CHHHHHHHHHHHHHHHHHcCCccHHHH
Q 016290          244 SKETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQ-SLAECLKKEFRLTINILRAIISADIYE  322 (392)
Q Consensus       244 ~~~~~eei~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~-~l~~~l~~E~~~~~~~~~~~~~~d~~e  322 (392)
                      +.+++++|+++|+.    ...+|+.++++.|+++||.|++++|++++++... +++++|++|++++.+++.+   +||+|
T Consensus       235 ~~~~~~~i~~~L~~----~~~~~a~~~a~~la~~sP~a~~~~k~~l~~~~~~~sl~e~l~~E~~~~~~~~~s---~D~~E  307 (353)
T 4hdt_A          235 TGDTVADIIAALRA----HDAPAAGEAADLIATRSPIALSVTLESVRRAAKLQSLEDTLRQEYRVSCASLKS---HDLVE  307 (353)
T ss_dssp             TCSSHHHHHHHHHH----HCSHHHHHHHHHHTTSCHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTC---HHHHH
T ss_pred             CCCCHHHHHHHHHh----cccHHHHHHHHHHHhcCcHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhCC---chHHH
Confidence            99999999999998    6778999999999999999999999999999884 8999999999999999999   99999


Q ss_pred             HHHHHHhccCCCCCCCCCCCCCCCHHHHhcccCCCCCCccCccCcc
Q 016290          323 GIRALTIEKDNAPKWDPPTLDKVDDDKVDLVFQPFGEDLELQIPEN  368 (392)
Q Consensus       323 Gv~a~l~dK~r~P~w~~~~l~~v~~~~v~~~f~p~~~~~~l~~~~~  368 (392)
                      ||+|||++|||+|+|+|++++||++++|++||+|+++  +|.|..+
T Consensus       308 GvrAfl~dekR~P~w~p~~l~~V~~~~v~~~f~p~~~--el~~~~~  351 (353)
T 4hdt_A          308 GIRAQLVDKDRNPKWRPATLAEVTEADVEAYFAPVDP--ELTFEGE  351 (353)
T ss_dssp             HHHHHHC----CCCCSSCSGGGCCHHHHHGGGCCCSS--CCCCCCC
T ss_pred             HHhhhhhCcCCCCCCCCCChhhCCHHHHHHHcCCCCC--CCCCCCc
Confidence            9999999999999999999999999999999999976  5666543

>3ju1_A Enoyl-COA hydratase/isomerase family protein; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; HET: MSE; 2.30A {Shewanella oneidensis}

Probab=100.00  E-value=3.8e-74  Score=575.22  Aligned_cols=342  Identities=28%  Similarity=0.477  Sum_probs=310.7

Q ss_pred             CCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCC-CccccCCCchhhccCCC-----C
Q 016290           11 EQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVG-RAFSAGGDLKMFYDGRN-----S   84 (392)
Q Consensus        11 ~~~V~~~~~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G-~~FcaG~Dl~~l~~~~~-----~   84 (392)
                      ++.|.++++++|++||||||+++|+||.+|+.+|.++|+.++.|++|++|||||+| ++||+|+|++++.....     .
T Consensus        41 ~~~v~~~~~~~V~~ItLnrP~~~NAl~~~m~~~L~~al~~~~~d~~vr~vVltG~G~~~FcaG~Dl~~~~~~~~~~~~~~  120 (407)
T 3ju1_A           41 FQTLATASGKLVGVVTLNVEKALNALDLDMVRAMTVQLNLWKKDPLIACVVLDGSGEKAFCAGGDVRALYHASVAAKGQV  120 (407)
T ss_dssp             EEEEECTTSCEEEEEEECCGGGTSCBCHHHHHHHHHHHHHHHHCTTEEEEEEEESSSSEEECCBCCHHHHHHHHHHTSSC
T ss_pred             cceEEEEEECCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhCCCcEEEEEecCCCCcccCCCChhhhhhccccccccc
Confidence            34577788899999999999999999999999999999999999999999999999 89999999999864211     1


Q ss_pred             chhHHHHHHHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcchH
Q 016290           85 KDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGH  164 (392)
Q Consensus        85 ~~~~~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G~  164 (392)
                      ......++...+.++..|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|.
T Consensus       121 ~~~~~~~~~~~~~l~~~i~~~~kPvIAaVnG~a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~P~~G~t~~L~rl~g~  200 (407)
T 3ju1_A          121 TEVAKVFFEEEYRLDYLLHTYGKPVLVWGDGIVMGGGLGLMAGASHKVVTETSRIAMPEVTIGLYPDVGGSYFLNRMPGK  200 (407)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTCSSCEEEECCSEEETHHHHHHHHCSEEEECTTCEEECGGGGGTCCSCTTHHHHTTTSSTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCEEEEECCccccCcchHHhcCCEEEEcCCCEEeChHhhcCCCCCchHHHHHhhhhHH
Confidence            12246778888899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCC-----HHHHHHHHHHhhccc--CCChhhHHHHHH
Q 016290          165 LGEFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGD-----EIAVKSAIEEFSEDV--QLDGQSVLNKQS  237 (392)
Q Consensus       165 ~a~~L~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~-----~~~~~~~l~~~~~~~--~~~~~~~~~~~~  237 (392)
                      ++++|+|||++++|+||+++||||+|||++++.+++++|.++.+.+     .+.+.+++++|....  ..+++.+..+++
T Consensus       201 ~A~~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~L~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~l~~~~~  280 (407)
T 3ju1_A          201 MGLFLGLTAYHMNAADACYVGLADHYLNRDDKELMFDAMATLDWSDSPALNHQRLDTMINELSNQVDIPKGDSVLAESQE  280 (407)
T ss_dssp             HHHHHHHHCCCBCHHHHHHHTSCSEECCGGGHHHHHHHHHSSCCCSCHHHHHHHHHHHHHHHHTTCSSCCCCCHHHHTHH
T ss_pred             HHHHHHHcCCcCcHHHHHHCCCccEEcCHHHHHHHHHHHhcccccccccchhHHHHHHHHHhhhhccccCCchhHHHHHH
Confidence            9999999999999999999999999999999999999998876644     344667777775442  235677889999


Q ss_pred             HHHHHhCcCCHHHHHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHcCCc
Q 016290          238 IIDECFSKETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIIS  317 (392)
Q Consensus       238 ~i~~~f~~~~~eei~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~  317 (392)
                      +|++||+ +|+++|+++|+...  .+.+||++++++|+++||.|++++|++++++...++++++++|++++.+++.+   
T Consensus       281 ~I~~~f~-~sv~~i~~~L~~~~--~~~~~a~~~a~~la~~sP~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~s---  354 (407)
T 3ju1_A          281 MIDRLMA-GSLTDIVTRMSTLS--TDEAWLSKACATMLAGSPISWHLAYIQTQLGTKLSLAQCFKWELTVSVNVCAK---  354 (407)
T ss_dssp             HHHHHTC-SCHHHHHHHHHHCC--CSCHHHHHHHHHHHHSCHHHHHHHHHHHHTTTCSCHHHHHHHHHHHHHHHHHH---
T ss_pred             HHHHHhc-CCHHHHHHHHHhcc--cccHHHHHHHHHHHhCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhCC---
Confidence            9999999 99999999998732  24789999999999999999999999999999999999999999999999999   


Q ss_pred             cHHHHHHHHHHhccCCCCCCCCCCCCCCCHHHHhcccCCCC
Q 016290          318 ADIYEGIRALTIEKDNAPKWDPPTLDKVDDDKVDLVFQPFG  358 (392)
Q Consensus       318 ~d~~eGv~a~l~dK~r~P~w~~~~l~~v~~~~v~~~f~p~~  358 (392)
                      +||+|||+||+|||+|+|+|+|++++||++++|++||+|.+
T Consensus       355 ~D~~EGvrAflidKdr~P~w~~~~l~~V~~~~v~~~f~~~~  395 (407)
T 3ju1_A          355 GDFCEGVRALLIDKDKQPKWQFADVQSVPNSVIEDILTSPW  395 (407)
T ss_dssp             SSHHHHHHHHTTSCCCCCCCSSSSTTTSCHHHHHHHHSCCC
T ss_pred             HHHHHHHHHHHhcCCcCCCCCCCChHhCCHHHHHHHhCCCC
Confidence            99999999999999999999999999999999999999765

>3bpt_A 3-hydroxyisobutyryl-COA hydrolase; coenzyme A, beta-hydroxyisobutyryl acid, querceti structural genomics consortium, SGC; HET: QUE; 1.50A {Homo sapiens}

Probab=100.00  E-value=4.8e-73  Score=560.96  Aligned_cols=353  Identities=38%  Similarity=0.650  Sum_probs=318.9

Q ss_pred             CCCCCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCC-CccccCCCchhhccCC-CCc
Q 016290            8 NPDEQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVG-RAFSAGGDLKMFYDGR-NSK   85 (392)
Q Consensus         8 ~~~~~~V~~~~~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G-~~FcaG~Dl~~l~~~~-~~~   85 (392)
                      ++..+.|.++++++|++||||||+++|+||.+|+.+|.++|+.++.|++|++|||||+| ++||+|+|++++.... ...
T Consensus         2 ~~~~~~v~~~~~~~v~~itLnrP~~~Nal~~~m~~~L~~al~~~~~d~~vr~vVltG~g~~~FcaG~Dl~~~~~~~~~~~   81 (363)
T 3bpt_A            2 TDAAEEVLLGKKGCTGVITLNRPKFLNALTLNMIRQIYPQLKKWEQDPETFLIIIKGAGGKAFCAGGDIRVISEAEKAKQ   81 (363)
T ss_dssp             CCCCCSEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEETTSSEEECCBCHHHHHHHHTSSC
T ss_pred             CCCCcceEEEEECCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEECCCCCcccCCcCHHHHHhhccccc
Confidence            45566799999999999999999999999999999999999999999999999999998 9999999999886421 111


Q ss_pred             hhHHHHHHHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcchHH
Q 016290           86 DSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHL  165 (392)
Q Consensus        86 ~~~~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G~~  165 (392)
                      .....++...++++..|.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|.+
T Consensus        82 ~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~~g~~  161 (363)
T 3bpt_A           82 KIAPVFFREEYMLNNAVGSCQKPYVALIHGITMGGGVGLSVHGQFRVATEKCLFAMPETAIGLFPDVGGGYFLPRLQGKL  161 (363)
T ss_dssp             CCHHHHHHHHHHHHHHHHTCSSCEEEEECSEEETHHHHTTTTSSEEEECTTCEEECCGGGTTSCCCTTHHHHHHHSSTTH
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCCEEEEECCEEehHHHHHHHhCCEEEEcCCeEEeCCccccCCCCCchHHHHHHHhhHHH
Confidence            11245666677888999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccC---CChhhHHHHHHHHHHH
Q 016290          166 GEFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQ---LDGQSVLNKQSIIDEC  242 (392)
Q Consensus       166 a~~L~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~---~~~~~~~~~~~~i~~~  242 (392)
                      +++|+|||++++|+||+++||||++||++++.+..+++.++...++..+..+++.|.....   +.+..+......|++|
T Consensus       162 a~~l~ltg~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~  241 (363)
T 3bpt_A          162 GYFLALTGFRLKGRDVYRAGIATHFVDSEKLAMLEEDLLALKSPSKENIASVLENYHTESKIDRDKSFILEEHMDKINSC  241 (363)
T ss_dssp             HHHHHHHCCCEETHHHHHTTSCSEECCGGGHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCCTTTTCCCTTGGGHHHHHHH
T ss_pred             HHHHHHcCCCCCHHHHHHCCCcceecCHHHHHHHHHHHHhcccCCHHHHHHHHHHHHhhhcccCCCchhhHHHHHHHHHH
Confidence            9999999999999999999999999999999888788888777788899999999875332   1245566788999999


Q ss_pred             hCcCCHHHHHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHcCCccHHHH
Q 016290          243 FSKETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYE  322 (392)
Q Consensus       243 f~~~~~eei~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~e  322 (392)
                      |+.+++++|+++|++.    ..+||.+++++|+++||.|++.+|++++++...+++++++.|.+.+..++.+   +||+|
T Consensus       242 f~~~~~~ei~~al~~~----~~~~a~~~a~~la~~sP~al~~~k~~l~~~~~~~l~~~l~~E~~~~~~~~~s---~D~~E  314 (363)
T 3bpt_A          242 FSANTVEEIIENLQQD----GSSFALEQLKVINKMSPTSLKITLRQLMEGSSKTLQEVLTMEYRLSQACMRG---HDFHE  314 (363)
T ss_dssp             TTSSSHHHHHHHHHHH----CCHHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHTS---SHHHH
T ss_pred             hCCCCHHHHHHHHhcc----ChHHHHHHHHHHHhCCchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcC---ccHHh
Confidence            9999999999999983    5689999999999999999999999999999999999999999999999999   99999


Q ss_pred             HHHHHHhccCCCCCCCCCCCCCCCHHHHhcccCCCCCCccCccCcc
Q 016290          323 GIRALTIEKDNAPKWDPPTLDKVDDDKVDLVFQPFGEDLELQIPEN  368 (392)
Q Consensus       323 Gv~a~l~dK~r~P~w~~~~l~~v~~~~v~~~f~p~~~~~~l~~~~~  368 (392)
                      ||+||++||+|+|+|+++++++|++++|++||+|+++ .+|.++.+
T Consensus       315 Gv~Afl~eK~r~P~~~~~~~~~v~~~~v~~~f~~~~~-~~l~~~~~  359 (363)
T 3bpt_A          315 GVRAVLIDKDQSPKWKPADLKEVTEEDLNNHFKSLGS-SDLKFAEN  359 (363)
T ss_dssp             HHHHHTTSCCCCCCCSSCSGGGSCHHHHHHHHSCCGG-GSCCSSCG
T ss_pred             hhhheeeCCCCCCCCCCCChhhCCHHHHHHHhcCCCc-ccccchHh
Confidence            9999998888999999999999999999999999843 67776654

>3hrx_A Probable enoyl-COA hydratase; the spiral fold, the crotonase superfamily, lyase; 1.85A {Thermus thermophilus}

Probab=100.00  E-value=1.5e-62  Score=464.06  Aligned_cols=252  Identities=32%  Similarity=0.432  Sum_probs=236.5

Q ss_pred             EEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhHHHHHH
Q 016290           14 VLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVY   93 (392)
Q Consensus        14 V~~~~~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~~~~~   93 (392)
                      |++|++|+|++||||||+++|+||.+|+.+|.++|+.++.|++|++|||||+|++||+|+|++++.....   ....+++
T Consensus         2 vl~E~~dgVa~itlnrP~~~NAl~~~m~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~---~~~~~~~   78 (254)
T 3hrx_A            2 VLKERQDGVLVLTLNRPEKLNAITGELLDALYAALKEGEEDREVRALLLTGAGRAFSAGQDLTEFGDRKP---DYEAHLR   78 (254)
T ss_dssp             EEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSBCCBCGGGTTTSCC---CHHHHTH
T ss_pred             eEEEEECCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCcccCccHHHhcccch---hhHHHHH
Confidence            7899999999999999999999999999999999999999999999999999999999999999865322   2255666


Q ss_pred             HHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcch-HHHHHHhhc
Q 016290           94 RMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HLGEFLALT  172 (392)
Q Consensus        94 ~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G-~~a~~L~lt  172 (392)
                      ..+.++..|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++| .++++|+||
T Consensus        79 ~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~lGl~p~~g~~~~L~r~vG~~~A~~lllt  158 (254)
T 3hrx_A           79 RYNRVVEALSGLEKPLVVAVNGVAAGAGMSLALWGDLRLAAVGASFTTAFVRIGLVPDSGLSFLLPRLVGLAKAQELLLL  158 (254)
T ss_dssp             HHHHHHHHHHTCSSCEEEEECSEEETHHHHHHTTCSEEEEETTCEEECCGGGGTCCCCTTHHHHHHHHHCHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCEEEEECCEeeehhhhhhhccceeeEcCCCEEEchhhCcCcCCcccHHHHHHHHhCcchHHHHhhc
Confidence            7788999999999999999999999999999999999999999999999999999999999999999999 999999999


Q ss_pred             CCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHhCcCCHHHHH
Q 016290          173 GARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKETVAEII  252 (392)
Q Consensus       173 G~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~eei~  252 (392)
                      |++++|+||+++||||++||++++.+.+..+                                                 
T Consensus       159 g~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~-------------------------------------------------  189 (254)
T 3hrx_A          159 SPRLSAEEALALGLVHRVVPAEKLMEEALSL-------------------------------------------------  189 (254)
T ss_dssp             CCCEEHHHHHHHTSCSEEECGGGHHHHHHHH-------------------------------------------------
T ss_pred             CcccCHHHHHHCCCeEEecCcHHHHHHHHHH-------------------------------------------------
Confidence            9999999999999999999999987644443                                                 


Q ss_pred             HHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHhccC
Q 016290          253 KSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGIRALTIEKD  332 (392)
Q Consensus       253 ~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eGv~a~l~dK~  332 (392)
                                        +++|++.||.+++.+|+++++....++++++..|...+..++.+   +|++||++||+ +| 
T Consensus       190 ------------------a~~la~~~~~a~~~~K~~~~~~~~~~~~~~l~~e~~~~~~~~~s---~d~~Eg~~AF~-eK-  246 (254)
T 3hrx_A          190 ------------------AKELAQGPTRAYALTKKLLLETYRLSLTEALALEAVLQGQAGQT---QDHEEGVRAFR-EK-  246 (254)
T ss_dssp             ------------------HHHHHTSCHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHTS---HHHHHHHHHHH-TT-
T ss_pred             ------------------HHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhCC---HHHHHHHHHHh-CC-
Confidence                              78999999999999999999999999999999999999999999   99999999999 77 


Q ss_pred             CCCCCCCC
Q 016290          333 NAPKWDPP  340 (392)
Q Consensus       333 r~P~w~~~  340 (392)
                      |+|+|+++
T Consensus       247 R~P~f~Gr  254 (254)
T 3hrx_A          247 RPPRFQGR  254 (254)
T ss_dssp             SCCCCCCC
T ss_pred             CCCCCCCC
Confidence            99999975

>4fzw_C 1,2-epoxyphenylacetyl-COA isomerase; structural genomics, montreal-kingston bacterial structural initiative, BSGI, crotonase fold; 2.55A {Escherichia coli}

Probab=100.00  E-value=6e-62  Score=464.42  Aligned_cols=261  Identities=25%  Similarity=0.360  Sum_probs=231.8

Q ss_pred             CCCCCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCC--c
Q 016290            8 NPDEQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNS--K   85 (392)
Q Consensus         8 ~~~~~~V~~~~~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~--~   85 (392)
                      .++++.|+++++++|++||||||+++|+||.+|+.+|.++|+.++.|++|++|||||+|++||+|+|++++......  .
T Consensus        11 GsM~e~il~~~~~gVa~itlnRP~~~NAl~~~m~~~L~~al~~~~~d~~vr~vVltg~G~~FcaG~Dl~~~~~~~~~~~~   90 (274)
T 4fzw_C           11 GSMMEFILSHVEKGVMTLTLNRPERLNSFNDEMHAQLAECLKQVERDDTIRCLLLTGAGRGFCAGQDLNDRNVDPTGPAP   90 (274)
T ss_dssp             -----CEEEEEETTEEEEEECCTTTTSCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSCSBCCBCCC---------CC
T ss_pred             ccccccEEEEEECCEEEEEEcCcCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceeCCcChHhhhccccccch
Confidence            34556799999999999999999999999999999999999999999999999999999999999999987642221  1


Q ss_pred             hhHHHHHHHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcch-H
Q 016290           86 DSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-H  164 (392)
Q Consensus        86 ~~~~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G-~  164 (392)
                      +....+.+..+.++..|.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++| .
T Consensus        91 ~~~~~~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~  170 (274)
T 4fzw_C           91 DLGMSVERFYNPLVRRLAKLPKPVICAVNGVAAGAGATLALGGDIVIAARSAKFVMAFSKLGLIPDCGGTWLLPRVAGRA  170 (274)
T ss_dssp             CHHHHHHHTHHHHHHHHHHCSSCEEEEECSCEETHHHHHHHTSSEEEEETTCEEECCGGGTTCCCTTTHHHHHHHHTCHH
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCEEEEECCceeecCceeeeccceEEECCCCEEECcccCcccCCCccHHHHHHHHhhHH
Confidence            222445555667899999999999999999999999999999999999999999999999999999999999999999 8


Q ss_pred             HHHHHhhcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHhC
Q 016290          165 LGEFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFS  244 (392)
Q Consensus       165 ~a~~L~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~  244 (392)
                      ++++|+|||++++|+||+++||||++||++++.+.+.++                                         
T Consensus       171 ~A~~llltg~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~-----------------------------------------  209 (274)
T 4fzw_C          171 RAMGLALLGNQLSAEQAHEWGMIWQVVDDETLADTAQQL-----------------------------------------  209 (274)
T ss_dssp             HHHHHHHHCCCEEHHHHHHTTSSSEEECGGGHHHHHHHH-----------------------------------------
T ss_pred             HHHHHHHhCCcCCHHHHHHCCCceEEeChHHHHHHHHHH-----------------------------------------
Confidence            999999999999999999999999999999887654444                                         


Q ss_pred             cCCHHHHHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHcCCccHHHHHH
Q 016290          245 KETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGI  324 (392)
Q Consensus       245 ~~~~eei~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eGv  324 (392)
                                                +++|+++||.+++.+|++++.+...+++++++.|...+..++.+   +|++||+
T Consensus       210 --------------------------a~~la~~~~~a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s---~d~~Egv  260 (274)
T 4fzw_C          210 --------------------------ARHLATQPTFGLGLIKQAINSAETNTLDTQLDLERDYQRLAGRS---ADYREGV  260 (274)
T ss_dssp             --------------------------HHHHTTSCHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHTTS---HHHHHHH
T ss_pred             --------------------------HHHHHcCCHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHhcC---HHHHHHH
Confidence                                      78999999999999999999999999999999999999999999   9999999


Q ss_pred             HHHHhccCCCCCCCCC
Q 016290          325 RALTIEKDNAPKWDPP  340 (392)
Q Consensus       325 ~a~l~dK~r~P~w~~~  340 (392)
                      +||+ +| |+|+|+++
T Consensus       261 ~AF~-eK-R~P~f~Gr  274 (274)
T 4fzw_C          261 SAFL-AK-RSPQFTGK  274 (274)
T ss_dssp             HHHH-C--CCCCCCCC
T ss_pred             HHHh-CC-CCCCCCCC
Confidence            9999 77 99999974

>4fzw_A 2,3-dehydroadipyl-COA hydratase; structural genomics, montreal-kingston bacterial structural initiative, BSGI, crotonase fold; 2.55A {Escherichia coli}

Probab=100.00  E-value=2.6e-62  Score=463.20  Aligned_cols=255  Identities=24%  Similarity=0.355  Sum_probs=235.2

Q ss_pred             CCCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhHH
Q 016290           10 DEQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCL   89 (392)
Q Consensus        10 ~~~~V~~~~~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~   89 (392)
                      ++++|+++++|+|++||||||+++|+||.+|+.+|.++|+.++.|++|++|||||.|++||+|+|++++....    ...
T Consensus         3 ~ms~l~ve~~~~Va~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~----~~~   78 (258)
T 4fzw_A            3 SMSELIVSRQQRVLLLTLNRPAARNALNNALLMQLVNELEAAATDTSISVCVITGNARFFAAGADLNEMAEKD----LAA   78 (258)
T ss_dssp             --CEEEEEEETTEEEEEEECGGGTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEECCSSEEEECBCHHHHHTCC----HHH
T ss_pred             CCCcEEEEEECCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCceeCCCchhhhccch----hhh
Confidence            4456999999999999999999999999999999999999999999999999999999999999999986521    113


Q ss_pred             HHHHHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcch-HHHHH
Q 016290           90 EVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HLGEF  168 (392)
Q Consensus        90 ~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G-~~a~~  168 (392)
                      .+....+.++..|.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++| .++++
T Consensus        79 ~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~A~~  158 (258)
T 4fzw_A           79 TLNDTRPQLWARLQAFNKPLIAAVNGYALGAGCELALLCDVVVAGENARFGLPEITLGIMPGAGGTQRLIRSVGKSLASK  158 (258)
T ss_dssp             HHTCSHHHHHHHHHTCCSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCCSSHHHHHHHHHCHHHHHH
T ss_pred             HHHhHHHHHHHHHHHCCCCEEEEEcCcceeeeeEeecccceEEECCCCEEECcccCCCcCCCchHHHHHHHHhCHHHHHH
Confidence            33344567888999999999999999999999999999999999999999999999999999999999999999 99999


Q ss_pred             HhhcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHhCcCCH
Q 016290          169 LALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKETV  248 (392)
Q Consensus       169 L~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~  248 (392)
                      |+|||++++|+||+++||||++||++++.+.+.++                                             
T Consensus       159 llltg~~i~a~eA~~~GLv~~vv~~~~l~~~a~~~---------------------------------------------  193 (258)
T 4fzw_A          159 MVLSGESITAQQAQQAGLVSDVFPSDLTLEYALQL---------------------------------------------  193 (258)
T ss_dssp             HHHHCCCEEHHHHHHHTSCSEEECTTTHHHHHHHH---------------------------------------------
T ss_pred             HHHcCCcCcHHHHHHCCCeeEEeCchHHHHHHHHH---------------------------------------------
Confidence            99999999999999999999999999987644443                                             


Q ss_pred             HHHHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHH
Q 016290          249 AEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGIRALT  328 (392)
Q Consensus       249 eei~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eGv~a~l  328 (392)
                                            +++|++.||.+++.+|+++++....++++++..|.+.+..++.+   +|++||++||+
T Consensus       194 ----------------------a~~la~~~p~a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s---~d~~Eg~~AF~  248 (258)
T 4fzw_A          194 ----------------------ASKMARHSPLALQAAKQALRQSQEVALQAGLAQERQLFTLLAAT---EDRHEGISAFL  248 (258)
T ss_dssp             ----------------------HHHHTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHTS---HHHHHHHHHHH
T ss_pred             ----------------------HHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcC---HHHHHHHHHHh
Confidence                                  78999999999999999999999999999999999999999999   99999999999


Q ss_pred             hccCCCCCCCCC
Q 016290          329 IEKDNAPKWDPP  340 (392)
Q Consensus       329 ~dK~r~P~w~~~  340 (392)
                       +| |+|+|+++
T Consensus       249 -eK-R~P~f~Gr  258 (258)
T 4fzw_A          249 -QK-RTPDFKGR  258 (258)
T ss_dssp             -TT-SCCCCCCC
T ss_pred             -CC-CCCCCCCC
Confidence             77 99999974

>3kqf_A Enoyl-COA hydratase/isomerase family protein; IDP02329, structural genomic for structural genomics of infectious diseases, csgid; HET: MSE; 1.80A {Bacillus anthracis}

Probab=100.00  E-value=1.7e-59  Score=445.61  Aligned_cols=259  Identities=23%  Similarity=0.353  Sum_probs=238.9

Q ss_pred             CCCCCcEEEE-EeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCC-CccccCCCchhhccCCCCc
Q 016290            8 NPDEQVVLGE-EIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVG-RAFSAGGDLKMFYDGRNSK   85 (392)
Q Consensus         8 ~~~~~~V~~~-~~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G-~~FcaG~Dl~~l~~~~~~~   85 (392)
                      +++++.|.++ .+++|++||||||+++|+||.+|+.+|.++++.++.|+++++|||||.| ++||+|+|++++...  ..
T Consensus         4 mm~~~~v~~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~--~~   81 (265)
T 3kqf_A            4 MLQLQNISVDYATPHVVKISLNRERQANSLSLALLEELQNILTQINEEANTRVVILTGAGEKAFCAGADLKERAGM--NE   81 (265)
T ss_dssp             ---CCSEEEECCSTTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEEESSSSEEECCBCHHHHTTC--CH
T ss_pred             cccCCeEEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCeeeeCcChHHHhcc--CH
Confidence            4567889999 8999999999999999999999999999999999999999999999999 999999999998653  22


Q ss_pred             hhHHHHHHHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcch-H
Q 016290           86 DSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-H  164 (392)
Q Consensus        86 ~~~~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G-~  164 (392)
                      .....++...+.++..|.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++| .
T Consensus        82 ~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~  161 (265)
T 3kqf_A           82 EQVRHAVSMIRTTMEMVEQLPQPVIAAINGIALGGGTELSLACDFRIAAESASLGLTETTLAIIPGAGGTQRLPRLIGVG  161 (265)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCCSSHHHHHHHHHCHH
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCcEEECcccccCcCCCccHHHHHHHHhCHH
Confidence            333566777788999999999999999999999999999999999999999999999999999999999999999999 9


Q ss_pred             HHHHHhhcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHhC
Q 016290          165 LGEFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFS  244 (392)
Q Consensus       165 ~a~~L~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~  244 (392)
                      ++++|++||++++|+||+++||||++||++++.+.+.++                                         
T Consensus       162 ~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~-----------------------------------------  200 (265)
T 3kqf_A          162 RAKELIYTGRRISAQEAKEYGLVEFVVPVHLLEEKAIEI-----------------------------------------  200 (265)
T ss_dssp             HHHHHHHHCCCEEHHHHHHHTSCSEEECGGGHHHHHHHH-----------------------------------------
T ss_pred             HHHHHHHcCCCCCHHHHHHCCCccEEeCHHHHHHHHHHH-----------------------------------------
Confidence            999999999999999999999999999998887644443                                         


Q ss_pred             cCCHHHHHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHcCCccHHHHHH
Q 016290          245 KETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGI  324 (392)
Q Consensus       245 ~~~~eei~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eGv  324 (392)
                                                +++|++.||.+++.+|++++++...+++++++.|...+..++.+   +|++||+
T Consensus       201 --------------------------a~~la~~~p~a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s---~d~~eg~  251 (265)
T 3kqf_A          201 --------------------------AEKIASNGPIAVRLAKEAISNGIQVDLHTGLQMEKQAYEGVIHT---KDRLEGL  251 (265)
T ss_dssp             --------------------------HHHHHTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHTC---HHHHHHH
T ss_pred             --------------------------HHHHHcCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCC---HHHHHHH
Confidence                                      78999999999999999999999999999999999999999999   9999999


Q ss_pred             HHHHhccCCCCCCCCC
Q 016290          325 RALTIEKDNAPKWDPP  340 (392)
Q Consensus       325 ~a~l~dK~r~P~w~~~  340 (392)
                      +||+ +| |+|+|+++
T Consensus       252 ~af~-ek-r~p~f~g~  265 (265)
T 3kqf_A          252 QAFK-EK-RTPMYKGE  265 (265)
T ss_dssp             HHHH-TT-SCCCCCCC
T ss_pred             HHHH-cC-CCCCCCCC
Confidence            9999 66 89999863

>3g64_A Putative enoyl-COA hydratase; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; 2.05A {Streptomyces coelicolor A3}

Probab=100.00  E-value=1.2e-58  Score=443.11  Aligned_cols=261  Identities=22%  Similarity=0.316  Sum_probs=240.3

Q ss_pred             CCCCCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCC--c
Q 016290            8 NPDEQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNS--K   85 (392)
Q Consensus         8 ~~~~~~V~~~~~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~--~   85 (392)
                      ++.++.|+++.+++|++||||||+++|+||.+|+.+|.++++.++.|++|++|||||.|++||+|+|++++......  .
T Consensus        13 ~~~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~   92 (279)
T 3g64_A           13 TPEWRHLRVEITDGVATVTLARPDKLNALTFEAYADLRDLLAELSRRRAVRALVLAGEGRGFCSGGDVDEIIGATLSMDT   92 (279)
T ss_dssp             CSCCSSEEEEEETTEEEEEESCGGGTTCBCHHHHHHHHHHHHHHHHTTCCSEEEEEECSSCSBCCBCTTTTHHHHTTCCH
T ss_pred             CCCCCeEEEEEECCEEEEEECCCcccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceecCcCHHHHhhccccchh
Confidence            45577899999999999999999999999999999999999999999999999999999999999999998653221  1


Q ss_pred             hhHHHHHHHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCcc-CCchhHHHHhhcch-
Q 016290           86 DSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFH-TDCGFSFIHSRLPG-  163 (392)
Q Consensus        86 ~~~~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~-P~~G~s~~L~rl~G-  163 (392)
                      .....+....+.++..|.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++ |++|++++|+|++| 
T Consensus        93 ~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~~p~~g~~~~l~r~vG~  172 (279)
T 3g64_A           93 ARLLDFNRMTGQVVRAVRECPFPVIAALHGVAAGAGAVLALAADFRVADPSTRFAFLFTRVGLSGGDMGAAYLLPRVVGL  172 (279)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSSSCEEEEECSEEETHHHHHHHHSSEEEECTTCEEECCGGGGTCCSCCTTHHHHHHHHHCH
T ss_pred             hHHHHHHHHHHHHHHHHHhCCCCEEEEEcCeeccccHHHHHhCCEEEEeCCCEEeCchhhcCCCCCchhHHHHHHHHhCH
Confidence            1223555666788999999999999999999999999999999999999999999999999999 99999999999999 


Q ss_pred             HHHHHHhhcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHh
Q 016290          164 HLGEFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECF  243 (392)
Q Consensus       164 ~~a~~L~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f  243 (392)
                      .++++|++||++++|+||+++||||++||++++.+.+.++                                        
T Consensus       173 ~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~----------------------------------------  212 (279)
T 3g64_A          173 GHATRLLMLGDTVRAPEAERIGLISELTEEGRADEAARTL----------------------------------------  212 (279)
T ss_dssp             HHHHHHHHHCCCEEHHHHHHHTCCSEECCTTCHHHHHHHH----------------------------------------
T ss_pred             HHHHHHHHcCCCcCHHHHHHCCCCCEecCchHHHHHHHHH----------------------------------------
Confidence            9999999999999999999999999999999987655444                                        


Q ss_pred             CcCCHHHHHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHcCCccHHHHH
Q 016290          244 SKETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEG  323 (392)
Q Consensus       244 ~~~~~eei~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eG  323 (392)
                                                 +++|++.||.+++.+|++++.....+++++++.|...+..++.+   +|++||
T Consensus       213 ---------------------------a~~la~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s---~d~~eg  262 (279)
T 3g64_A          213 ---------------------------ARRLADGPALAHAQTKALLTAELDMPLAAAVELDASTQALLMTG---EDYAEF  262 (279)
T ss_dssp             ---------------------------HHHHHTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTS---HHHHHH
T ss_pred             ---------------------------HHHHHhCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcC---HHHHHH
Confidence                                       78999999999999999999999999999999999999999999   999999


Q ss_pred             HHHHHhccCCCCCCCCC
Q 016290          324 IRALTIEKDNAPKWDPP  340 (392)
Q Consensus       324 v~a~l~dK~r~P~w~~~  340 (392)
                      ++||+ +| |+|+|+++
T Consensus       263 ~~af~-ek-r~p~f~g~  277 (279)
T 3g64_A          263 HAAFT-EK-RPPKWQGR  277 (279)
T ss_dssp             HHHHH-TT-SCCCCCCC
T ss_pred             HHHHh-cC-CCCCCCCC
Confidence            99999 67 99999875

>3pea_A Enoyl-COA hydratase/isomerase family protein; structural genomics, center for structural genomics of infec diseases, csgid; HET: FLC PG4; 1.82A {Bacillus anthracis}

Probab=100.00  E-value=8.8e-59  Score=439.81  Aligned_cols=257  Identities=23%  Similarity=0.328  Sum_probs=234.9

Q ss_pred             CCCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhHH
Q 016290           10 DEQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCL   89 (392)
Q Consensus        10 ~~~~V~~~~~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~   89 (392)
                      +++.|.++++++|++||||||++ |+||.+|+.+|.++|+.++.|+++++|||||.|++||+|+|++++..... .....
T Consensus         4 m~~~v~~~~~~~v~~itlnrp~~-Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~-~~~~~   81 (261)
T 3pea_A            4 MLKFLSVRVEDHIAVATLNHAPA-NAMSSQVMHDVTELIDQVEKDDNIRVVVIHGEGRFFSAGADIKEFTSVTE-AKQAT   81 (261)
T ss_dssp             CCSSEEEEEETTEEEEEECCTTT-TCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSBCCBCGGGSSTTCC-HHHHH
T ss_pred             cccceEEEEECCEEEEEECCCCC-CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceeCCcCHHHHhhcCc-hhHHH
Confidence            45679999999999999999999 99999999999999999999999999999999999999999999865322 12223


Q ss_pred             HHHHHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcch-HHHHH
Q 016290           90 EVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HLGEF  168 (392)
Q Consensus        90 ~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G-~~a~~  168 (392)
                      .+....+.++..|.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++| .++++
T Consensus        82 ~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a~~  161 (261)
T 3pea_A           82 ELAQLGQVTFERVEKCSKPVIAAIHGAALGGGLEFAMSCHMRFATESAKLGLPELTLGLIPGFAGTQRLPRYVGKAKACE  161 (261)
T ss_dssp             HHHHHHHHHHHHHHTCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCCSSHHHHHHHHHCHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEECcccccCcCCCccHHHHHHHHhCHHHHHH
Confidence            44444456888999999999999999999999999999999999999999999999999999999999999999 99999


Q ss_pred             HhhcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHhCcCCH
Q 016290          169 LALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKETV  248 (392)
Q Consensus       169 L~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~  248 (392)
                      |++||++++|+||+++||||++||++++.+.+.++                                             
T Consensus       162 l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~---------------------------------------------  196 (261)
T 3pea_A          162 MMLTSTPITGAEALKWGLVNGVFAEETFLDDTLKV---------------------------------------------  196 (261)
T ss_dssp             HHHHCCCEEHHHHHHHTSSSEEECGGGHHHHHHHH---------------------------------------------
T ss_pred             HHHcCCCCCHHHHHHCCCccEecCHHHHHHHHHHH---------------------------------------------
Confidence            99999999999999999999999998887644443                                             


Q ss_pred             HHHHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHH
Q 016290          249 AEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGIRALT  328 (392)
Q Consensus       249 eei~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eGv~a~l  328 (392)
                                            +++|++.||.+++.+|++++.+...+++++++.|...+..++.+   +|++||+++|+
T Consensus       197 ----------------------a~~la~~~~~a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s---~d~~eg~~af~  251 (261)
T 3pea_A          197 ----------------------AKQIAGKSPATARAVLELLQTTKSSHYYEGVQREAQIFGEVFTS---EDGREGVAAFL  251 (261)
T ss_dssp             ----------------------HHHHHTSCHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHS---HHHHHHHHHHH
T ss_pred             ----------------------HHHHHcCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCC---HHHHHHHHHHH
Confidence                                  78999999999999999999998889999999999999999999   99999999999


Q ss_pred             hccCCCCCCCCC
Q 016290          329 IEKDNAPKWDPP  340 (392)
Q Consensus       329 ~dK~r~P~w~~~  340 (392)
                       +| |+|+|+++
T Consensus       252 -ek-r~P~f~g~  261 (261)
T 3pea_A          252 -EK-RKPSFSGR  261 (261)
T ss_dssp             -TT-SCCCCCC-
T ss_pred             -cC-CCCCCCCC
Confidence             66 99999863

>3sll_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.35A {Mycobacterium abscessus}

Probab=100.00  E-value=2e-58  Score=443.53  Aligned_cols=259  Identities=22%  Similarity=0.310  Sum_probs=232.5

Q ss_pred             CCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCch----
Q 016290           11 EQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKD----   86 (392)
Q Consensus        11 ~~~V~~~~~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~----   86 (392)
                      ...|+++.+++|++||||||+++|+||.+|+.+|.++|+.++.|++|++|||+|+|++||+|+|++++........    
T Consensus        23 ~~~v~~~~~~~va~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~G~~F~aG~Dl~~~~~~~~~~~~~~~  102 (290)
T 3sll_A           23 SFVLVDRPRPEIALVTLNRPERMNAMAFDVMLPFKQMLVDISHDNDVRAVVITGAGKGFCSGADQKSAGPIPHIGGLTQP  102 (290)
T ss_dssp             CCEEEEEEETTEEEEEECCGGGTTCCCHHHHHHHHHHHHHHHTCTTCCEEEEEESTTCSBCC------CCCSSCTTCCHH
T ss_pred             CeEEEEEEECCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHHcCCCeeEEEEECCCCCeeCCcChHHHhcccccccccch
Confidence            3569999999999999999999999999999999999999999999999999999999999999999875322111    


Q ss_pred             -hHHHHHHHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCC-chhHHHHhhcch-
Q 016290           87 -SCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTD-CGFSFIHSRLPG-  163 (392)
Q Consensus        87 -~~~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~-~G~s~~L~rl~G-  163 (392)
                       ....++...++++..|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|+ +|++++|+|++| 
T Consensus       103 ~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~~g~~~~L~r~vG~  182 (290)
T 3sll_A          103 TIALRSMELLDEVILTLRRMHQPVIAAINGAAIGGGLCLALACDVRVASQDAYFRAAGINNGLTASELGLSYLLPRAIGT  182 (290)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECTTTTTTSCSCCTTHHHHHHHHHCH
T ss_pred             hHHHHHHHHHHHHHHHHHhCCCCEEEEECCeehHHHHHHHHHCCEEEEeCCCEEECchhccCcCCCcccHHHHHHHHhCH
Confidence             12456667788999999999999999999999999999999999999999999999999999999 999999999999 


Q ss_pred             HHHHHHhhcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHh
Q 016290          164 HLGEFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECF  243 (392)
Q Consensus       164 ~~a~~L~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f  243 (392)
                      .++++|++||++++|+||+++||||++||++++.+.+.++                                        
T Consensus       183 ~~A~~llltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~~----------------------------------------  222 (290)
T 3sll_A          183 SRASDIMLTGRDVDADEAERIGLVSRKVASESLLEECYAI----------------------------------------  222 (290)
T ss_dssp             HHHHHHHHHCCCEEHHHHHHHTSSSEEECGGGHHHHHHHH----------------------------------------
T ss_pred             HHHHHHHHcCCCCCHHHHHHCCCccEEeChhHHHHHHHHH----------------------------------------
Confidence            8999999999999999999999999999998887644433                                        


Q ss_pred             CcCCHHHHHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhh-cCHHHHHHHHHHHHHHHH-HcCCccHHH
Q 016290          244 SKETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGRE-QSLAECLKKEFRLTINIL-RAIISADIY  321 (392)
Q Consensus       244 ~~~~~eei~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~-~~l~~~l~~E~~~~~~~~-~~~~~~d~~  321 (392)
                                                 +++|++.||.+++.+|++++.... .+++++++.|...+..++ .+   +|++
T Consensus       223 ---------------------------a~~la~~~~~a~~~~K~~l~~~~~~~~l~~~l~~e~~~~~~~~~~s---~d~~  272 (290)
T 3sll_A          223 ---------------------------GERIAGFSRPGIELTKRTIWSGLDAASLESHMHQEGLGQLYVRLLT---DNFE  272 (290)
T ss_dssp             ---------------------------HHHHHHSCHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHC---CHHH
T ss_pred             ---------------------------HHHHHcCCHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHHhcC---HHHH
Confidence                                       789999999999999999999988 899999999999999999 99   9999


Q ss_pred             HHHHHHHhccCCCCCCCCCC
Q 016290          322 EGIRALTIEKDNAPKWDPPT  341 (392)
Q Consensus       322 eGv~a~l~dK~r~P~w~~~~  341 (392)
                      ||++||+ +| |+|+|++++
T Consensus       273 eg~~AFl-ek-R~P~f~g~~  290 (290)
T 3sll_A          273 EATAARK-EK-RPAEFRDKR  290 (290)
T ss_dssp             HHHHHHH-TT-SCCCCCSCC
T ss_pred             HHHHHHH-cC-CCCCCCCCC
Confidence            9999999 66 999999864

>3moy_A Probable enoyl-COA hydratase; ssgcid, seattle structural genomics center for infectious DI enoyl COA, actinobacteria, lyase; 1.50A {Mycobacterium smegmatis}

Probab=100.00  E-value=4.9e-59  Score=441.96  Aligned_cols=260  Identities=21%  Similarity=0.296  Sum_probs=234.5

Q ss_pred             CCCCCCCCcEEEEEeCC-EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCC
Q 016290            5 VVKNPDEQVVLGEEIGN-VRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRN   83 (392)
Q Consensus         5 ~~~~~~~~~V~~~~~~~-v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~   83 (392)
                      +..+++++.|.++.+++ |++||||||+++|+||.+|+.+|.++++.++.|++|++|||||.|++||+|+|++++.....
T Consensus         2 ~~~mm~~~~i~~~~~~~gv~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~   81 (263)
T 3moy_A            2 PGSMTTYTTIATSRPVAGVGLIRLDRPDALNALNQTLEAEVLDAARDFDADLEIGAIVVTGSERAFAAGADIAEMVTLTP   81 (263)
T ss_dssp             ----CCCSSEEEECCSTTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEECCSSEEEESBCHHHHTTCCH
T ss_pred             ccccCCCCeEEEEEeCCeEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCeeCCcChHHHhccCc
Confidence            34456678899999998 99999999999999999999999999999999999999999998899999999999865321


Q ss_pred             CchhHHHHHHHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcch
Q 016290           84 SKDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG  163 (392)
Q Consensus        84 ~~~~~~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G  163 (392)
                        .  ..+......++..|.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|
T Consensus        82 --~--~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG  157 (263)
T 3moy_A           82 --H--QARERNLLSGWDSLTQVRKPIVAAVAGYALGGGCELAMLCDLVIAADTARFGQPEITLGILPGLGGTQRLTRAVG  157 (263)
T ss_dssp             --H--HHHHTTTTHHHHHHTTCCSCEEEEECBEEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCSSSTTTHHHHHHC
T ss_pred             --h--hHHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHHCCEEEecCCCEEeCcccccCCCCchhHHHHHHHHhC
Confidence              1  122233356778899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             -HHHHHHhhcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHH
Q 016290          164 -HLGEFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDEC  242 (392)
Q Consensus       164 -~~a~~L~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~  242 (392)
                       .++++|++||++++|+||+++||||++||++++.+.+.+                                        
T Consensus       158 ~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~----------------------------------------  197 (263)
T 3moy_A          158 KAKAMDLCLTGRSLTAEEAERVGLVSRIVPAADLLDEALA----------------------------------------  197 (263)
T ss_dssp             HHHHHHHHHHCCEEEHHHHHHTTSCSEEECGGGHHHHHHH----------------------------------------
T ss_pred             HHHHHHHHHcCCCCCHHHHHHCCCccEecCchHHHHHHHH----------------------------------------
Confidence             999999999999999999999999999999887754443                                        


Q ss_pred             hCcCCHHHHHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHcCCccHHHH
Q 016290          243 FSKETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYE  322 (392)
Q Consensus       243 f~~~~~eei~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~e  322 (392)
                                                 ++++|+++||.+++.+|++++.....++++++..|...+..++.+   +|++|
T Consensus       198 ---------------------------~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s---~d~~e  247 (263)
T 3moy_A          198 ---------------------------VAQRIARMSRPAGRAVKDAINEAFERPLSAGMRYERDAFYAMFDT---HDQTE  247 (263)
T ss_dssp             ---------------------------HHHHHHHSCHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHTTS---HHHHH
T ss_pred             ---------------------------HHHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCC---HHHHH
Confidence                                       378999999999999999999999999999999999999999999   99999


Q ss_pred             HHHHHHhccCCCCCCCCC
Q 016290          323 GIRALTIEKDNAPKWDPP  340 (392)
Q Consensus       323 Gv~a~l~dK~r~P~w~~~  340 (392)
                      |++||+ +| |+|+|+++
T Consensus       248 g~~AF~-ek-R~p~f~g~  263 (263)
T 3moy_A          248 GMTAFL-EK-RTPEFTDR  263 (263)
T ss_dssp             HHHHHH-TT-SCCCCCCC
T ss_pred             HHHHHH-hC-CCCCCCCC
Confidence            999999 67 99999863

>3i47_A Enoyl COA hydratase/isomerase (crotonase); structural genomics; 1.58A {Legionella pneumophila subsp} SCOP: c.14.1.0

Probab=100.00  E-value=1.8e-58  Score=439.15  Aligned_cols=258  Identities=21%  Similarity=0.318  Sum_probs=233.5

Q ss_pred             CCCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCC-CchhH
Q 016290           10 DEQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRN-SKDSC   88 (392)
Q Consensus        10 ~~~~V~~~~~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~-~~~~~   88 (392)
                      +++.|+++++++|++||||||+++|+||.+|+.+|.++|+.++.|++||+|||||.|++||+|+|++++..... .....
T Consensus         2 ~~~~v~~~~~~~va~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~   81 (268)
T 3i47_A            2 SLSDLLYEIQDKVGLLTMNRISKHNAFDNQLLTEMRIRLDSAINDTNVRVIVLKANGKHFSAGADLTWMQSMANFTEEEN   81 (268)
T ss_dssp             CCCSEEEEEETTEEEEEECCTTTTTCBCHHHHHHHHHHHHHHHHCTTCSEEEEEECSSCSBCSBCHHHHHHHHTCCHHHH
T ss_pred             CCCEEEEEEECCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEECCCCCeeCCCChhhhhccccccHHHH
Confidence            45679999999999999999999999999999999999999999999999999999999999999999865221 12222


Q ss_pred             HHHHHHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcch-HHHH
Q 016290           89 LEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HLGE  167 (392)
Q Consensus        89 ~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G-~~a~  167 (392)
                      ..+....++++..|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++ +|+|++| .+++
T Consensus        82 ~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~-~l~~~vG~~~A~  160 (268)
T 3i47_A           82 LEDSLVLGNLMYSISQSPKPTIAMVQGAAFGGGAGLAAACDIAIASTSARFCFSEVKLGLIPAVISP-YVVRAIGERAAK  160 (268)
T ss_dssp             HHHHHHHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCTTTHH-HHHHHHCHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCCCEEEEECCEEEhHhHHHHHhCCEEEEcCCCEEECcccccCCCcccHHH-HHHHHhCHHHHH
Confidence            3455566788999999999999999999999999999999999999999999999999999999988 7889999 9999


Q ss_pred             HHhhcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHhCcCC
Q 016290          168 FLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKET  247 (392)
Q Consensus       168 ~L~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~~~  247 (392)
                      +|+|||++++|+||+++||||++||++++.+.+.++                                            
T Consensus       161 ~llltg~~i~A~eA~~~GLV~~vv~~~~l~~~a~~~--------------------------------------------  196 (268)
T 3i47_A          161 MLFMSAEVFDATRAYSLNLVQHCVPDDTLLEFTLKY--------------------------------------------  196 (268)
T ss_dssp             HHHHHCCEEEHHHHHHTTSCSEEECGGGHHHHHHHH--------------------------------------------
T ss_pred             HHHHcCCccCHHHHHHcCCCcEeeChhHHHHHHHHH--------------------------------------------
Confidence            999999999999999999999999998887654444                                            


Q ss_pred             HHHHHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHH-HHHHHHHHHHHHHHcCCccHHHHHHHH
Q 016290          248 VAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAE-CLKKEFRLTINILRAIISADIYEGIRA  326 (392)
Q Consensus       248 ~eei~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~-~l~~E~~~~~~~~~~~~~~d~~eGv~a  326 (392)
                                             +++|+++||.+++.+|++++.....++++ .++.|...+..++.+   +|++||++|
T Consensus       197 -----------------------a~~la~~~~~a~~~~K~~l~~~~~~~l~~~~~~~e~~~~~~~~~s---~d~~eg~~A  250 (268)
T 3i47_A          197 -----------------------ASQISNNAPEAVKNSKQLAQYVANKKIDEELVRYTASLIAHKRVS---DEGQEGLKA  250 (268)
T ss_dssp             -----------------------HHHHHTSCHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHS---HHHHHHHHH
T ss_pred             -----------------------HHHHHcCCHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHhcC---HHHHHHHHH
Confidence                                   78999999999999999999998888888 789999999999999   999999999


Q ss_pred             HHhccCCCCCCCCC
Q 016290          327 LTIEKDNAPKWDPP  340 (392)
Q Consensus       327 ~l~dK~r~P~w~~~  340 (392)
                      |+ +| |+|+|++.
T Consensus       251 F~-ek-R~p~f~~~  262 (268)
T 3i47_A          251 FL-NK-EIPNWNEG  262 (268)
T ss_dssp             HH-HT-CCCTTC--
T ss_pred             HH-cC-CCCCCCCC
Confidence            99 66 99999864

>3hin_A Putative 3-hydroxybutyryl-COA dehydratase; structural genomics, protein structure INI NEW YORK structural genomix research consortium; 2.00A {Rhodopseudomonas palustris}

Probab=100.00  E-value=4.3e-59  Score=444.66  Aligned_cols=260  Identities=21%  Similarity=0.261  Sum_probs=235.5

Q ss_pred             CCCCCCCCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCC
Q 016290            5 VVKNPDEQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNS   84 (392)
Q Consensus         5 ~~~~~~~~~V~~~~~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~   84 (392)
                      +.++++++.|.++++++|++||||||+++|+||.+|+.+|.++|+.+  |++|++|||||.|++||+|+|++++....  
T Consensus         9 ~~~~m~~~~v~~~~~~~va~itlnrP~~~Nal~~~~~~~L~~al~~~--d~~vr~vVltg~g~~F~aG~Dl~~~~~~~--   84 (275)
T 3hin_A            9 AATIADPSTLVVDTVGPVLTIGLNRPKKRNALNDGLMAALKDCLTDI--PDQIRAVVIHGIGDHFSAGLDLSELRERD--   84 (275)
T ss_dssp             CCCCCCGGGEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHTSSC--CTTCCEEEEEESSSCSBCCBCGGGCCCCC--
T ss_pred             ccccCCCCeEEEEEECCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHh--CcCceEEEEECCCCCccCCCCHHHHhccC--
Confidence            33446677899999999999999999999999999999999999998  67999999999999999999999986521  


Q ss_pred             chhHHHHHHHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcch-
Q 016290           85 KDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-  163 (392)
Q Consensus        85 ~~~~~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G-  163 (392)
                      ......+....++++..|.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++| 
T Consensus        85 ~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~  164 (275)
T 3hin_A           85 ATEGLVHSQTWHRVFDKIQYCRVPVIAALKGAVIGGGLELACAAHIRVAEASAYYALPEGSRGIFVGGGGSVRLPRLIGV  164 (275)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCCSSHHHHHHHHHCH
T ss_pred             hhhHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEECchhccCCCCCccHHHHHHHHhCH
Confidence            2222445566678889999999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             HHHHHHhhcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHh
Q 016290          164 HLGEFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECF  243 (392)
Q Consensus       164 ~~a~~L~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f  243 (392)
                      .++++|+|||++++|+||+++||||++||++++.+.+.++                                        
T Consensus       165 ~~A~~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~----------------------------------------  204 (275)
T 3hin_A          165 ARMADMMLTGRVYSAAEGVVHGFSQYLIENGSAYDKALEL----------------------------------------  204 (275)
T ss_dssp             HHHHHHHHHCCCEEHHHHHHHTSCSEEESSSCHHHHHHHH----------------------------------------
T ss_pred             HHHHHHHHcCCCCCHHHHHHCCCCCEEeChhHHHHHHHHH----------------------------------------
Confidence            9999999999999999999999999999999987644443                                        


Q ss_pred             CcCCHHHHHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHcCCccHHHHH
Q 016290          244 SKETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEG  323 (392)
Q Consensus       244 ~~~~~eei~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eG  323 (392)
                                                 +++|+++||.+++.+|+++++....++++++..|...+..++.+   +|++||
T Consensus       205 ---------------------------a~~ia~~~p~a~~~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~s---~d~~eg  254 (275)
T 3hin_A          205 ---------------------------GNRVAQNAPLTNFAVLQALPMIAEANPQTGLLMESLMATVAQSD---QEAKTR  254 (275)
T ss_dssp             ---------------------------HHHHTTSCHHHHHHHHTHHHHHHHSCHHHHHHHHHHHHHHHHHS---HHHHHH
T ss_pred             ---------------------------HHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCC---HHHHHH
Confidence                                       78999999999999999999999999999999999999999999   999999


Q ss_pred             HHHHHhccCCCCCCCCC
Q 016290          324 IRALTIEKDNAPKWDPP  340 (392)
Q Consensus       324 v~a~l~dK~r~P~w~~~  340 (392)
                      ++||+ +| |+|+|+++
T Consensus       255 ~~AF~-ek-R~p~f~~~  269 (275)
T 3hin_A          255 IRAFL-DH-KTAKVREG  269 (275)
T ss_dssp             HHHHH-HH-HHHHC---
T ss_pred             HHHHH-cC-CCCCCCCC
Confidence            99999 67 89999754

>1nzy_A Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogenase; lyase; HET: BCA; 1.80A {Pseudomonas SP} SCOP: c.14.1.3 PDB: 1jxz_A* 1nzy_B*

Probab=100.00  E-value=1.5e-58  Score=440.24  Aligned_cols=260  Identities=20%  Similarity=0.275  Sum_probs=235.7

Q ss_pred             CcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCC---CchhH
Q 016290           12 QVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRN---SKDSC   88 (392)
Q Consensus        12 ~~V~~~~~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~---~~~~~   88 (392)
                      +.|.++.+++|++||||||+++|+||.+|+.+|.++|+.++.|++|++|||||.|++||+|+|++++.....   .....
T Consensus         3 ~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~   82 (269)
T 1nzy_A            3 EAIGHRVEDGVAEITIKLPRHRNALSVKAMQEVTDALNRAEEDDSVGAVMITGAEDAFCAGFYLREIPLDKGVAGVRDHF   82 (269)
T ss_dssp             SSEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSBCCBCGGGSCSSSHHHHHHHHH
T ss_pred             ceEEEEEECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHhhCCCeeEEEEECCCCCcccCcCHHHHhhcccccChHHHH
Confidence            458899999999999999999999999999999999999999999999999999999999999998754210   11111


Q ss_pred             HHHHHHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcch-HHHH
Q 016290           89 LEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HLGE  167 (392)
Q Consensus        89 ~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G-~~a~  167 (392)
                      ..++...++++..|.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++| .+++
T Consensus        83 ~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~  162 (269)
T 1nzy_A           83 RIAALWWHQMIHKIIRVKRPVLAAINGVAAGGGLGISLASDMAICADSAKFVCAWHTIGIGNDTATSYSLARIVGMRRAM  162 (269)
T ss_dssp             HHHHHHHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTCCCCTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCCCEEEEECCeeecHHHHHHHhCCEEEecCCCEEeCcccccCCCCCccHHHHHHHHhhHHHHH
Confidence            245555678889999999999999999999999999999999999999999999999999999999999999999 9999


Q ss_pred             HHhhcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHhCcCC
Q 016290          168 FLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKET  247 (392)
Q Consensus       168 ~L~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~~~  247 (392)
                      +|++||++++|+||+++||||++||++++.+.+.+                                             
T Consensus       163 ~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~---------------------------------------------  197 (269)
T 1nzy_A          163 ELMLTNRTLYPEEAKDWGLVSRVYPKDEFREVAWK---------------------------------------------  197 (269)
T ss_dssp             HHHHHCCCBCHHHHHHHTSCSCEECHHHHHHHHHH---------------------------------------------
T ss_pred             HHHHcCCCCCHHHHHHCCCccEeeCHHHHHHHHHH---------------------------------------------
Confidence            99999999999999999999999998776654333                                             


Q ss_pred             HHHHHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHcCCccHHHHHHHHH
Q 016290          248 VAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGIRAL  327 (392)
Q Consensus       248 ~eei~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eGv~a~  327 (392)
                                            ++++|++.||.+++.+|++++.+...++++++..|...+..++.+   +|++||+++|
T Consensus       198 ----------------------~a~~la~~~p~a~~~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~s---~d~~egi~af  252 (269)
T 1nzy_A          198 ----------------------VARELAAAPTHLQVMAKERFHAGWMQPVEECTEFEIQNVIASVTH---PHFMPCLTRF  252 (269)
T ss_dssp             ----------------------HHHHHHHSCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHS---TTHHHHHHHH
T ss_pred             ----------------------HHHHHHcCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcC---HHHHHHHHHH
Confidence                                  378899999999999999999998889999999999999999999   9999999999


Q ss_pred             HhccCCCCCCCCCCCC
Q 016290          328 TIEKDNAPKWDPPTLD  343 (392)
Q Consensus       328 l~dK~r~P~w~~~~l~  343 (392)
                      + +| |+|+|++++|.
T Consensus       253 ~-ek-r~p~f~~~~l~  266 (269)
T 1nzy_A          253 L-DG-HRADRPQVELP  266 (269)
T ss_dssp             H-TT-CCTTCCSSCCC
T ss_pred             H-hc-CCCCCCCCCCC
Confidence            9 66 99999988764

>3myb_A Enoyl-COA hydratase; ssgcid, struct genomics, seattle structural genomics center for infectious lyase; 1.55A {Mycobacterium smegmatis}

Probab=100.00  E-value=2.8e-58  Score=441.54  Aligned_cols=255  Identities=20%  Similarity=0.298  Sum_probs=237.0

Q ss_pred             EEEEEe--CCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhHHHH
Q 016290           14 VLGEEI--GNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEV   91 (392)
Q Consensus        14 V~~~~~--~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~~~   91 (392)
                      |+++++  ++|++||||||+++|+||.+|+.+|.++|+.++.|++|++|||+|.|++||+|+|++++... ........+
T Consensus        26 v~~~~~~~~~va~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~G~~F~aG~Dl~~~~~~-~~~~~~~~~  104 (286)
T 3myb_A           26 LLLQDRDERGVVTLTLNRPQAFNALSEAMLAALGEAFGTLAEDESVRAVVLAASGKAFCAGHDLKEMRAE-PSREYYEKL  104 (286)
T ss_dssp             SEEEEECTTSEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEEECSSCSBCCBCHHHHHSS-CCHHHHHHH
T ss_pred             EEEEEecCCCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCeEEEEEECCCCCccCCcChhhhhcc-ccHHHHHHH
Confidence            999999  99999999999999999999999999999999999999999999999999999999998762 222333567


Q ss_pred             HHHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcch-HHHHHHh
Q 016290           92 VYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HLGEFLA  170 (392)
Q Consensus        92 ~~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G-~~a~~L~  170 (392)
                      +...++++..|.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++ ++|++++|+|++| .++++|+
T Consensus       105 ~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~lGl~-~~g~~~~L~r~vG~~~A~~ll  183 (286)
T 3myb_A          105 FARCTDVMLAIQRLPAPVIARVHGIATAAGCQLVAMCDLAVATRDARFAVSGINVGLF-CSTPGVALSRNVGRKAAFEML  183 (286)
T ss_dssp             HHHHHHHHHHHHHSSSCEEEEECSCEETHHHHHHHHSSEEEEETTCEEECGGGGGTCC-CHHHHHHHTTTSCHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCCEEEEECCeehHHHHHHHHhCCEEEEcCCCEEECcccccCCC-CchHHHHHHHHcCHHHHHHHH
Confidence            7778889999999999999999999999999999999999999999999999999999 8899999999999 9999999


Q ss_pred             hcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHhCcCCHHH
Q 016290          171 LTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKETVAE  250 (392)
Q Consensus       171 ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~ee  250 (392)
                      |||++++|+||+++||||++||++++.+.+.++                                               
T Consensus       184 ltG~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~-----------------------------------------------  216 (286)
T 3myb_A          184 VTGEFVSADDAKGLGLVNRVVAPKALDDEIEAM-----------------------------------------------  216 (286)
T ss_dssp             HHCCCEEHHHHHHHTSCSEEECGGGHHHHHHHH-----------------------------------------------
T ss_pred             HcCCCCCHHHHHHCCCCcEecCHHHHHHHHHHH-----------------------------------------------
Confidence            999999999999999999999998887654444                                               


Q ss_pred             HHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHhc
Q 016290          251 IIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGIRALTIE  330 (392)
Q Consensus       251 i~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eGv~a~l~d  330 (392)
                                          +++|++.||.+++.+|+++++....+++++++.|...+..++.+   +|++||+++|+ +
T Consensus       217 --------------------a~~la~~~p~a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s---~d~~egi~aFl-e  272 (286)
T 3myb_A          217 --------------------VSKIVAKPRAAVAMGKALFYRQIETDIESAYADAGTTMACNMMD---PSALEGVSAFL-E  272 (286)
T ss_dssp             --------------------HHHHHHSCHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHS---HHHHHHHHHHH-T
T ss_pred             --------------------HHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCC---HHHHHHHHHHH-c
Confidence                                78899999999999999999998899999999999999999999   99999999999 6


Q ss_pred             cCCCCCCCCCCC
Q 016290          331 KDNAPKWDPPTL  342 (392)
Q Consensus       331 K~r~P~w~~~~l  342 (392)
                      | |+|+|++++.
T Consensus       273 k-r~p~f~g~~p  283 (286)
T 3myb_A          273 K-RRPEWHTPQP  283 (286)
T ss_dssp             T-SCCCCCCCC-
T ss_pred             c-CCCCCCCCCC
Confidence            6 9999998754

>3rsi_A Putative enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.00A {Mycobacterium abscessus}

Probab=100.00  E-value=1.5e-58  Score=439.30  Aligned_cols=260  Identities=24%  Similarity=0.301  Sum_probs=225.4

Q ss_pred             CCCCCCCCCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCC
Q 016290            4 GVVKNPDEQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRN   83 (392)
Q Consensus         4 ~~~~~~~~~~V~~~~~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~   83 (392)
                      |+.+|+.++.|.++++++|++||||||+++|+||.+|+.+|.++|+.++.|++|++|||||.|++||+|+|++ ...  .
T Consensus         1 ~~~~m~~~~~v~~~~~~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~-~~~--~   77 (265)
T 3rsi_A            1 GPGSMSAARELLVERDGPVVILTMNRPHRRNALSTNMVSQFAAAWDEIDHDDGIRAAILTGAGSAYCVGGDLS-DGW--M   77 (265)
T ss_dssp             --------CCEEEEEETTEEEEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSEECC----------
T ss_pred             CCCCCCCCCcEEEEEECCEEEEEEcCcccccCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCcccCcCCC-ccc--c
Confidence            3445667888999999999999999999999999999999999999999999999999999999999999998 211  1


Q ss_pred             CchhHHHHHHHHHH-HHHHH-H--hcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHh
Q 016290           84 SKDSCLEVVYRMYW-LCHHI-H--TYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHS  159 (392)
Q Consensus        84 ~~~~~~~~~~~~~~-l~~~i-~--~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~  159 (392)
                       .. ...+....+. ++..| .  ++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+
T Consensus        78 -~~-~~~~~~~~~~~~~~~l~~~~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~  155 (265)
T 3rsi_A           78 -VR-DGSAPPLDPATIGKGLLLSHTLTKPLIAAVNGACLGGGCEMLQQTDIRVSDEHATFGLPEVQRGLVPGAGSMVRLK  155 (265)
T ss_dssp             ---------CCCHHHHHHHTTSSCCCSSCEEEEECSCEETHHHHHHTTCSEEEEETTCEEECGGGGGTCCCTTTHHHHHH
T ss_pred             -cc-hHHHHHHhHHHHHHHHHHhcCCCCCEEEEECCeeeHHHHHHHHHCCEEEecCCCEEECchhccCCCCCccHHHHHH
Confidence             11 1223322345 77788 8  99999999999999999999999999999999999999999999999999999999


Q ss_pred             hcch-HHHHHHhhcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHH
Q 016290          160 RLPG-HLGEFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSI  238 (392)
Q Consensus       160 rl~G-~~a~~L~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  238 (392)
                      |++| .++++|++||++++|+||+++||||++||++++.+.+.++                                   
T Consensus       156 ~~vG~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~-----------------------------------  200 (265)
T 3rsi_A          156 RQIPYTKAMEMILTGEPLTAFEAYHFGLVGHVVPAGTALDKARSL-----------------------------------  200 (265)
T ss_dssp             HHSCHHHHHHHHHHCCCEEHHHHHHTTSCSEEESTTCHHHHHHHH-----------------------------------
T ss_pred             HHhCHHHHHHHHHcCCCCCHHHHHHCCCccEecChhHHHHHHHHH-----------------------------------
Confidence            9999 9999999999999999999999999999999987654444                                   


Q ss_pred             HHHHhCcCCHHHHHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHcCCcc
Q 016290          239 IDECFSKETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISA  318 (392)
Q Consensus       239 i~~~f~~~~~eei~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~  318 (392)
                                                      +++|++.||.+++.+|+++++....+++++++.|...+..++.+   +
T Consensus       201 --------------------------------a~~la~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s---~  245 (265)
T 3rsi_A          201 --------------------------------ADRIVRNGPLAVRNAKEAIVRSGWLAEEDARAIEARLTRPVITS---A  245 (265)
T ss_dssp             --------------------------------HHHHHTSCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTS---H
T ss_pred             --------------------------------HHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcC---H
Confidence                                            78999999999999999999999899999999999999999999   9


Q ss_pred             HHHHHHHHHHhccCCCCCCCCC
Q 016290          319 DIYEGIRALTIEKDNAPKWDPP  340 (392)
Q Consensus       319 d~~eGv~a~l~dK~r~P~w~~~  340 (392)
                      |++||++||+ +| |+|+|+++
T Consensus       246 d~~eg~~af~-ek-r~p~f~g~  265 (265)
T 3rsi_A          246 DAREGLAAFK-EK-REARFTGR  265 (265)
T ss_dssp             HHHHHHHHHH-HT-SCCCCCCC
T ss_pred             HHHHHHHHHH-cC-CCCCCCCC
Confidence            9999999999 67 99999863

>3p5m_A Enoyl-COA hydratase/isomerase; seattle structural genomics center for infectious disease, S coenzyme A, tuberculosis; 2.05A {Mycobacterium avium}

Probab=100.00  E-value=2.6e-58  Score=435.16  Aligned_cols=251  Identities=22%  Similarity=0.325  Sum_probs=231.9

Q ss_pred             CCCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhHH
Q 016290           10 DEQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCL   89 (392)
Q Consensus        10 ~~~~V~~~~~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~   89 (392)
                      +++.|.++.+++|++||||||+++|+||.+|+.+|.++++.++.|+++++|||+|.|++||+|+|++++..        .
T Consensus         4 ~~~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~--------~   75 (255)
T 3p5m_A            4 SMNGISVEHDGAVLRIRLDRPEKLNAVDTPMLEELSVHIRDAEADESVRAVLLTGAGRAFCSGGDLTGGDT--------A   75 (255)
T ss_dssp             CBTTEEEEEETTEEEEEECCGGGTTEECHHHHHHHHHHHHHHHHCTTCCEEEEEESSSCSBCEECC---CH--------H
T ss_pred             CCceEEEEEECCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCCccCCCChhhhcc--------h
Confidence            44569999999999999999999999999999999999999999999999999999999999999998752        1


Q ss_pred             HHHHHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcch-HHHHH
Q 016290           90 EVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HLGEF  168 (392)
Q Consensus        90 ~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G-~~a~~  168 (392)
                      .+....+.++..|.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++| .++++
T Consensus        76 ~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~A~~  155 (255)
T 3p5m_A           76 GAADAANRVVRAITSLPKPVIAGVHGAAVGFGCSLALACDLVVAAPASYFQLAFTRVGLMPDGGASALLPLLIGRARTSR  155 (255)
T ss_dssp             HHHHHHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEECTTCEEECGGGGGTCCCCTTHHHHTHHHHCHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCCCEEEEeCCeehhhHHHHHHHCCEEEEcCCcEEeCcccccCcCCCccHHHHHHHHhCHHHHHH
Confidence            34455567889999999999999999999999999999999999999999999999999999999999999999 99999


Q ss_pred             HhhcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHhCcCCH
Q 016290          169 LALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKETV  248 (392)
Q Consensus       169 L~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~  248 (392)
                      |++||++++|+||+++||||++||++++.+.+.++                                             
T Consensus       156 l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~---------------------------------------------  190 (255)
T 3p5m_A          156 MAMTAEKISAATAFEWGMISHITSADEYESVLTDV---------------------------------------------  190 (255)
T ss_dssp             HHHHCCCEEHHHHHHTTSCSEECCTTCHHHHHHHH---------------------------------------------
T ss_pred             HHHcCCCcCHHHHHHCCCCCEeeCHHHHHHHHHHH---------------------------------------------
Confidence            99999999999999999999999999987655444                                             


Q ss_pred             HHHHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHH
Q 016290          249 AEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGIRALT  328 (392)
Q Consensus       249 eei~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eGv~a~l  328 (392)
                                            +++|++.||.+++.+|+++++....+++++++.|...+..++.+   +|++||+++|+
T Consensus       191 ----------------------a~~la~~~~~a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s---~d~~eg~~af~  245 (255)
T 3p5m_A          191 ----------------------LRSVSGGPTLAFGWTKRALAAATLAELEPVQAIEAEGQLALVET---ADFREGARAFR  245 (255)
T ss_dssp             ----------------------HHHHHTSCHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHTTS---HHHHHHHHHHH
T ss_pred             ----------------------HHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCC---HHHHHHHHHHH
Confidence                                  78999999999999999999998889999999999999999999   99999999999


Q ss_pred             hccCCCCCCCCC
Q 016290          329 IEKDNAPKWDPP  340 (392)
Q Consensus       329 ~dK~r~P~w~~~  340 (392)
                       +| |+|+|+++
T Consensus       246 -ek-r~p~f~g~  255 (255)
T 3p5m_A          246 -ER-RTPNFRGH  255 (255)
T ss_dssp             -TT-SCCCCCCC
T ss_pred             -cC-CCCCCCCC
Confidence             66 89999863

>3h81_A Enoyl-COA hydratase ECHA8; niaid, decode, infectious disease, MPCS, fatty acid metaboli metabolism, lyase, structural genomics; 1.80A {Mycobacterium tuberculosis} PDB: 3q0j_A* 3pzk_A 3q0g_A*

Probab=100.00  E-value=1.2e-58  Score=442.34  Aligned_cols=256  Identities=25%  Similarity=0.360  Sum_probs=232.8

Q ss_pred             CCCCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhH
Q 016290            9 PDEQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSC   88 (392)
Q Consensus         9 ~~~~~V~~~~~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~   88 (392)
                      ++++.|+++++++|++||||||+++|+||.+|+.+|.++|+.++.|++|++|||||.|++||+|+|++++.....  .  
T Consensus        22 m~~~~v~~~~~~~va~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~--~--   97 (278)
T 3h81_A           22 MTYETILVERDQRVGIITLNRPQALNALNSQVMNEVTSAATELDDDPDIGAIIITGSAKAFAAGADIKEMADLTF--A--   97 (278)
T ss_dssp             -CCSSEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEECCSSEEECCBCSHHHHTCCH--H--
T ss_pred             CCCCeEEEEEECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCCeecCcCHHHHhccCh--h--
Confidence            456789999999999999999999999999999999999999999999999999999999999999999865321  1  


Q ss_pred             HHHHHHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcch-HHHH
Q 016290           89 LEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HLGE  167 (392)
Q Consensus        89 ~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G-~~a~  167 (392)
                      ..++...+..+..|.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++| .+++
T Consensus        98 ~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~p~~g~~~~L~r~vG~~~A~  177 (278)
T 3h81_A           98 DAFTADFFATWGKLAAVRTPTIAAVAGYALGGGCELAMMCDVLIAADTAKFGQPEIKLGVLPGMGGSQRLTRAIGKAKAM  177 (278)
T ss_dssp             HHHHHTTTGGGHHHHTCCSCEEEEECBEEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCCSSHHHHHHHHHCHHHHH
T ss_pred             hHHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHHCCEEEEcCCCEEECchhhcCcCCCccHHHHHHHHhCHHHHH
Confidence            122223333467899999999999999999999999999999999999999999999999999999999999999 9999


Q ss_pred             HHhhcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHhCcCC
Q 016290          168 FLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKET  247 (392)
Q Consensus       168 ~L~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~~~  247 (392)
                      +|++||++++|+||+++||||++||++++.+.+.                                              
T Consensus       178 ~l~ltG~~~~A~eA~~~GLv~~vv~~~~l~~~a~----------------------------------------------  211 (278)
T 3h81_A          178 DLILTGRTMDAAEAERSGLVSRVVPADDLLTEAR----------------------------------------------  211 (278)
T ss_dssp             HHHHHCCCEEHHHHHHHTSCSEEECGGGHHHHHH----------------------------------------------
T ss_pred             HHHHhCCCcCHHHHHHCCCccEEeChhHHHHHHH----------------------------------------------
Confidence            9999999999999999999999999988765433                                              


Q ss_pred             HHHHHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHcCCccHHHHHHHHH
Q 016290          248 VAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGIRAL  327 (392)
Q Consensus       248 ~eei~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eGv~a~  327 (392)
                                           +++++|++.||.+++.+|++++++...+++++++.|.+.+..++.+   +|++||++||
T Consensus       212 ---------------------~~a~~la~~~p~a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s---~d~~eg~~AF  267 (278)
T 3h81_A          212 ---------------------ATATTISQMSASAARMAKEAVNRAFESSLSEGLLYERRLFHSAFAT---EDQSEGMAAF  267 (278)
T ss_dssp             ---------------------HHHHHHHTSCHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHTTS---HHHHHHHHHH
T ss_pred             ---------------------HHHHHHHhCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhCC---HHHHHHHHHH
Confidence                                 3478999999999999999999999999999999999999999999   9999999999


Q ss_pred             HhccCCCCCCCCC
Q 016290          328 TIEKDNAPKWDPP  340 (392)
Q Consensus       328 l~dK~r~P~w~~~  340 (392)
                      + +| |+|+|+++
T Consensus       268 ~-ek-R~P~f~g~  278 (278)
T 3h81_A          268 I-EK-RAPQFTHR  278 (278)
T ss_dssp             H-TT-SCCCCCCC
T ss_pred             H-cC-CCCCCCCC
Confidence            8 77 99999863

>3swx_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.10A {Mycobacterium abscessus}

Probab=100.00  E-value=2.5e-59  Score=444.56  Aligned_cols=262  Identities=18%  Similarity=0.210  Sum_probs=230.8

Q ss_pred             CCCCCCCCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCC
Q 016290            5 VVKNPDEQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNS   84 (392)
Q Consensus         5 ~~~~~~~~~V~~~~~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~   84 (392)
                      +..|++++.|.++++++|++||||||+++|+||.+|+.+|.++|+.++.|++|++|||||.|+.||+|+|++++......
T Consensus         2 p~~m~~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~   81 (265)
T 3swx_A            2 PGSMSDYETLRIRRDGYVLVIGLNRPAKRNAFDKTMLEELALALGEYETDTDLRAAVLYGEGPLFTAGLDLASVAAEIQG   81 (265)
T ss_dssp             -----CCSSEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSBCCBCHHHHHHHHC-
T ss_pred             CCCCCCCceEEEEEECCEEEEEECCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCcccCcChHHHhhcccc
Confidence            44456678899999999999999999999999999999999999999999999999999999889999999998642110


Q ss_pred             chhHHHHHHHHHHHHHHH-HhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcch
Q 016290           85 KDSCLEVVYRMYWLCHHI-HTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG  163 (392)
Q Consensus        85 ~~~~~~~~~~~~~l~~~i-~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G  163 (392)
                      ..  ..+....+.++..+ .++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|
T Consensus        82 ~~--~~~~~~~~~~~~~l~~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG  159 (265)
T 3swx_A           82 GA--SLTPEGGINPWQVDGRQLSKPLLVAVHGKVLTLGIELALAADIVIADETATFAQLEVNRGIYPFGGATIRFPRTAG  159 (265)
T ss_dssp             -C--CCCCTTCCCTTCCSSCCCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECGGGGGTSCCCSSHHHHHHHHHC
T ss_pred             hh--HHHHHHHHHHHHHHHHhCCCCEEEEEcCeeehHHHHHHHHCCEEEEcCCCEEECcccccccCCCccHHHHHHHHhh
Confidence            00  00111112344567 8999999999999999999999999999999999999999999999999999999999999


Q ss_pred             -HHHHHHhhcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHH
Q 016290          164 -HLGEFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDEC  242 (392)
Q Consensus       164 -~~a~~L~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~  242 (392)
                       .++++|++||++++|+||+++||||++||++++.+.+.++                                       
T Consensus       160 ~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~---------------------------------------  200 (265)
T 3swx_A          160 WGNAMRWMLTADTFDAVEAHRIGIVQEIVPVGEHVDTAIAI---------------------------------------  200 (265)
T ss_dssp             HHHHHHHHTTCCCEEHHHHHHTTSCSEEESTTCHHHHHHHH---------------------------------------
T ss_pred             HHHHHHHHHcCCcCCHHHHHHcCCCCEecChhHHHHHHHHH---------------------------------------
Confidence             9999999999999999999999999999999987644443                                       


Q ss_pred             hCcCCHHHHHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHcCCccHHHH
Q 016290          243 FSKETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYE  322 (392)
Q Consensus       243 f~~~~~eei~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~e  322 (392)
                                                  +++|++.||.+++.+|+++++....+++++++.|...+..++.+   +|++|
T Consensus       201 ----------------------------a~~la~~~p~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~s---~d~~e  249 (265)
T 3swx_A          201 ----------------------------AQTIARQAPLGVQATLRNARLAVREGDAAAEEQLVPTVRELFTS---EDATL  249 (265)
T ss_dssp             ----------------------------HHHHHHSCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHTS---HHHHH
T ss_pred             ----------------------------HHHHHcCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCC---HHHHH
Confidence                                        78999999999999999999998899999999999999999999   99999


Q ss_pred             HHHHHHhccCCCCCCCCC
Q 016290          323 GIRALTIEKDNAPKWDPP  340 (392)
Q Consensus       323 Gv~a~l~dK~r~P~w~~~  340 (392)
                      |++||+ +| |+|+|+++
T Consensus       250 g~~af~-ek-r~p~f~g~  265 (265)
T 3swx_A          250 GVQAFL-SR-TTAEFVGR  265 (265)
T ss_dssp             HHHHHH-TT-CCCCCCCC
T ss_pred             HHHHHh-cC-CCCCCCCC
Confidence            999999 66 89999863

>3fdu_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2; 2.00A {Acinetobacter baumannii}

Probab=100.00  E-value=3.1e-58  Score=437.11  Aligned_cols=254  Identities=19%  Similarity=0.349  Sum_probs=222.0

Q ss_pred             CCCCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhc---cCCCCc
Q 016290            9 PDEQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFY---DGRNSK   85 (392)
Q Consensus         9 ~~~~~V~~~~~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~---~~~~~~   85 (392)
                      +.++.|.++.+++|++||||||+++|+||.+|+.+|.++|+.++.|++|++|||||.|++||+|+|++++.   ......
T Consensus         2 s~~~~v~~~~~~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~   81 (266)
T 3fdu_A            2 SLHPHLNANLEGGVLTLAINRPEAKNALYGELYLWIAKALDEADQNKDVRVVVLRGAEHDFTAGNDMKDFMGFVQNPNAG   81 (266)
T ss_dssp             CCCTTEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSCSBCCBCHHHHHHHHHSCCCS
T ss_pred             CCCCeEEEEEECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCCCCeECCcCHHHHhhhccccchh
Confidence            45678999999999999999999999999999999999999999999999999999999999999999987   422211


Q ss_pred             hhHHHHHHHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcch-H
Q 016290           86 DSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-H  164 (392)
Q Consensus        86 ~~~~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G-~  164 (392)
                      .   .+....++++..|.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++| .
T Consensus        82 ~---~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~  158 (266)
T 3fdu_A           82 P---AGQVPPFVLLKSAARLSKPLIIAVKGVAIGIGVTILLQADLVFADNTALFQIPFVSLGLSPEGGASQLLVKQAGYH  158 (266)
T ss_dssp             C---GGGSHHHHHHHHHHHCCSCEEEEECSEEETHHHHGGGGCSEEEECTTCEEECCTTTTTCCCCTTHHHHHHHHHCHH
T ss_pred             h---HHHHHHHHHHHHHHhCCCCEEEEECCEEehHHHHHHHhCCEEEEcCCCEEECchhhhCCCCcchHHHHHHHHhCHH
Confidence            1   12233457788999999999999999999999999999999999999999999999999999999999999999 8


Q ss_pred             HHHHHhhcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHhC
Q 016290          165 LGEFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFS  244 (392)
Q Consensus       165 ~a~~L~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~  244 (392)
                      ++++|++||++++|+||+++||||++||  ++.+.+.                                           
T Consensus       159 ~A~~l~ltg~~i~A~eA~~~GLv~~vv~--~l~~~a~-------------------------------------------  193 (266)
T 3fdu_A          159 KAAELLFTAKKFNAETALQAGLVNEIVE--DAYATAQ-------------------------------------------  193 (266)
T ss_dssp             HHHHHHHHCCEECHHHHHHTTSCSEECS--CHHHHHH-------------------------------------------
T ss_pred             HHHHHHHhCCCcCHHHHHHCCCHHHHHH--HHHHHHH-------------------------------------------
Confidence            9999999999999999999999999999  6654333                                           


Q ss_pred             cCCHHHHHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHcCCccHHHHHH
Q 016290          245 KETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGI  324 (392)
Q Consensus       245 ~~~~eei~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eGv  324 (392)
                                              +++++|++.||.+++.+|++++... .+++++++.|...+..++.+   +|++||+
T Consensus       194 ------------------------~~a~~la~~~~~a~~~~K~~l~~~~-~~l~~~l~~e~~~~~~~~~s---~d~~eg~  245 (266)
T 3fdu_A          194 ------------------------ATAQHLTALPLASLKQTKALMKHDL-DQIIECIDHEAEIFMQRVQS---PEMLEAV  245 (266)
T ss_dssp             ------------------------HHHHHHHTSCHHHHHHHHHHHTTTH-HHHHHHHHHHHHHHHHHHTC---HHHHHHH
T ss_pred             ------------------------HHHHHHHhCCHHHHHHHHHHHHhhh-ccHHHHHHHHHHHHHHHhCC---HHHHHHH
Confidence                                    3478999999999999999999876 57999999999999999999   9999999


Q ss_pred             HHHHhccCCCCCCCCC
Q 016290          325 RALTIEKDNAPKWDPP  340 (392)
Q Consensus       325 ~a~l~dK~r~P~w~~~  340 (392)
                      +||+ +| |+|+|++.
T Consensus       246 ~aF~-ek-R~p~~~~~  259 (266)
T 3fdu_A          246 QAFM-QK-RQPDFSQE  259 (266)
T ss_dssp             HHHC------------
T ss_pred             HHHH-cC-CCCCCCCC
Confidence            9999 66 99999853

>2ej5_A Enoyl-COA hydratase subunit II; structural genomics, GK2038, NPPSFA, national project on prote structural and functional analyses; 2.00A {Geobacillus kaustophilus}

Probab=100.00  E-value=1.2e-57  Score=431.31  Aligned_cols=253  Identities=28%  Similarity=0.408  Sum_probs=227.1

Q ss_pred             CcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhHHHH
Q 016290           12 QVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEV   91 (392)
Q Consensus        12 ~~V~~~~~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~~~   91 (392)
                      +.|.++.+++|++||||||+++|+||.+|+.+|.++|+.++.|+++++|||||.|++||+|+|++++..... ...+...
T Consensus         3 ~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~-~~~~~~~   81 (257)
T 2ej5_A            3 ETIRYEVKGQVAWLTLNRPDQLNAFTEQMNAEVTKALKQAGADPNVRCVVITGAGRAFCAGEDLSGVTEEMD-HGDVLRS   81 (257)
T ss_dssp             SSEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSCSBCCBCC-------C-HHHHHHH
T ss_pred             CceEEEeECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCCccCCcCHHHHhhccc-hhHHHHH
Confidence            569999999999999999999999999999999999999999999999999999999999999998864221 1111111


Q ss_pred             HHHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcch-HHHHHHh
Q 016290           92 VYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HLGEFLA  170 (392)
Q Consensus        92 ~~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G-~~a~~L~  170 (392)
                        ..++++..|.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++| ..+++|+
T Consensus        82 --~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~  159 (257)
T 2ej5_A           82 --RYAPMMKALHHLEKPVVAAVNGAAAGAGMSLALACDFRLLSEKASFAPAFIHVGLVPDAGHLYYLPRLVGRAKALELA  159 (257)
T ss_dssp             --THHHHHHHHHHCCSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCCTTHHHHHHHHHCHHHHHHHH
T ss_pred             --HHHHHHHHHHhCCCCEEEEECccccchhHHHHHhCCEEEEcCCCEEeCcccccCCCCcchHHHHHHHHhCHHHHHHHH
Confidence              2467888999999999999999999999999999999999999999999999999999999999999999 9999999


Q ss_pred             hcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHhCcCCHHH
Q 016290          171 LTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKETVAE  250 (392)
Q Consensus       171 ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~ee  250 (392)
                      +||++++|+||+++||||++||++++.+.+.++                                               
T Consensus       160 ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~-----------------------------------------------  192 (257)
T 2ej5_A          160 VLGEKVTAEEAAALGLATKVIPLSDWEEEVKQF-----------------------------------------------  192 (257)
T ss_dssp             HHCCCEEHHHHHHHTCCSEEECGGGHHHHHHHH-----------------------------------------------
T ss_pred             HhCCccCHHHHHHcCCcceecChhHHHHHHHHH-----------------------------------------------
Confidence            999999999999999999999998877644443                                               


Q ss_pred             HHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHhc
Q 016290          251 IIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGIRALTIE  330 (392)
Q Consensus       251 i~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eGv~a~l~d  330 (392)
                                          +++|++.||.+++.+|++++.+...++++++..|...+..++.+   +|++||+++|+ +
T Consensus       193 --------------------a~~la~~~~~a~~~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~s---~d~~eg~~af~-e  248 (257)
T 2ej5_A          193 --------------------AERLSAMPTKAIGLIKRLLRESEETTFDRYLEREAECQRIAGLT---SDHREGVKAFF-E  248 (257)
T ss_dssp             --------------------HHHHHTSCHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHS---HHHHHHHHHHT-T
T ss_pred             --------------------HHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCC---hHHHHHHHHHh-c
Confidence                                78999999999999999999998889999999999999999999   99999999999 6


Q ss_pred             cCCCCCCCC
Q 016290          331 KDNAPKWDP  339 (392)
Q Consensus       331 K~r~P~w~~  339 (392)
                      | |+|+|++
T Consensus       249 k-r~p~~~~  256 (257)
T 2ej5_A          249 K-RKPLFQG  256 (257)
T ss_dssp             T-CCCCCCC
T ss_pred             C-CCCCCCC
Confidence            6 9999986

>2pbp_A Enoyl-COA hydratase subunit I; B-oxidation, structural genomics, NPPSFA, nationa on protein structural and functional analyses; 1.80A {Geobacillus kaustophilus} PDB: 2qq3_A

Probab=100.00  E-value=1.1e-57  Score=431.59  Aligned_cols=254  Identities=24%  Similarity=0.393  Sum_probs=230.6

Q ss_pred             CCCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhHH
Q 016290           10 DEQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCL   89 (392)
Q Consensus        10 ~~~~V~~~~~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~   89 (392)
                      .+..|.++.+++|++||||||+++|+||.+|+.+|.++|+.++.|+++++|||||.|++||+|+|++++....  .. ..
T Consensus         3 ~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~--~~-~~   79 (258)
T 2pbp_A            3 EFVSIAARQEGAVGIIELARPDVLNALSRQMVAEIVAAVEAFDRNEKVRVIVLTGRGRAFAAGADIQEMAKDD--PI-RL   79 (258)
T ss_dssp             -CCSEEEEEETTEEEEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTEEECCCCHHHHHTCC--HH-HH
T ss_pred             CcceEEEEeeCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCccCCcCHHHHhccc--ch-hH
Confidence            4567999999999999999999999999999999999999999999999999999999999999999986421  11 12


Q ss_pred             HHHHHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcch-HHHHH
Q 016290           90 EVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HLGEF  168 (392)
Q Consensus        90 ~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G-~~a~~  168 (392)
                      .+.... +++..|.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++| .++++
T Consensus        80 ~~~~~~-~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~  158 (258)
T 2pbp_A           80 EWLNQF-ADWDRLSIVKTPMIAAVNGLALGGGFELALSCDLIVASSAAEFGFPEVNLGVMPGAGGTQRLTKLIGPKRALE  158 (258)
T ss_dssp             HHHCTT-HHHHHHHTCCSCEEEEECSEEETHHHHHHHTSSEEEEETTCEEECGGGGGTCCCCSSHHHHHHHHHCHHHHHH
T ss_pred             HHHHHH-HHHHHHHhCCCCEEEEEcCEEEhHHHHHHHhCCEEEEcCCCEEECcccccCCCCcccHHHHHHHHhCHHHHHH
Confidence            222222 5677899999999999999999999999999999999999999999999999999999999999999 99999


Q ss_pred             HhhcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHhCcCCH
Q 016290          169 LALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKETV  248 (392)
Q Consensus       169 L~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~  248 (392)
                      |++||++++|+||+++||||++||++++.+.+.++                                             
T Consensus       159 l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~---------------------------------------------  193 (258)
T 2pbp_A          159 WLWTGARMSAKEAEQLGIVNRVVSPELLMEETMRL---------------------------------------------  193 (258)
T ss_dssp             HHHHCCCEEHHHHHHTTSCSEEECGGGHHHHHHHH---------------------------------------------
T ss_pred             HHHcCCccCHHHHHHcCCcceeeChHHHHHHHHHH---------------------------------------------
Confidence            99999999999999999999999988876544333                                             


Q ss_pred             HHHHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHH
Q 016290          249 AEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGIRALT  328 (392)
Q Consensus       249 eei~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eGv~a~l  328 (392)
                                            +++|++.||.+++.+|++++.+...++++++..|.+.+..++.+   +|++||+++|+
T Consensus       194 ----------------------a~~la~~~~~a~~~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~s---~d~~eg~~af~  248 (258)
T 2pbp_A          194 ----------------------AGRLAEQPPLALRLIKEAVQKAVDYPLYEGMQFERKNFYLLFAS---EDQKEGMAAFL  248 (258)
T ss_dssp             ----------------------HHHHHTSCHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTTS---HHHHHHHHHHH
T ss_pred             ----------------------HHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCC---HHHHHHHHHHH
Confidence                                  78999999999999999999998899999999999999999999   99999999999


Q ss_pred             hccCCCCCCCC
Q 016290          329 IEKDNAPKWDP  339 (392)
Q Consensus       329 ~dK~r~P~w~~  339 (392)
                       +| |+|+|++
T Consensus       249 -ek-r~p~~~~  257 (258)
T 2pbp_A          249 -EK-RKPRFQG  257 (258)
T ss_dssp             -TT-SCCCCCC
T ss_pred             -cc-CCCCCCC
Confidence             66 8999985

>3tlf_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, otholog; 2.15A {Mycobacterium avium subsp} SCOP: c.14.1.0

Probab=100.00  E-value=1.4e-58  Score=441.42  Aligned_cols=258  Identities=25%  Similarity=0.330  Sum_probs=226.7

Q ss_pred             CCCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCC-----C
Q 016290           10 DEQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRN-----S   84 (392)
Q Consensus        10 ~~~~V~~~~~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~-----~   84 (392)
                      +++.|+++.+++|++||||||+++|+||.+|+.+|.++|+.++.|++|++|||||.|++||+|+|++++.....     .
T Consensus         9 m~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~   88 (274)
T 3tlf_A            9 SFDTIKYEVDGHTATITLNRPDALNALSPHMITELRAAYHEAENDDRVWLLVVTGTGRAFCSGADVKEIPEDGKVIYERP   88 (274)
T ss_dssp             CCSSEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTEEECCBC--------------C
T ss_pred             cCCceEEEEECCEEEEEECCccccCCCCHHHHHHHHHHHHHHhcCCCeEEEEEeCCCCCcccCcCHHHHhhccccccccc
Confidence            44679999999999999999999999999999999999999999999999999999999999999999865322     0


Q ss_pred             chhHHHHHHHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcch-
Q 016290           85 KDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-  163 (392)
Q Consensus        85 ~~~~~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G-  163 (392)
                      .......+...+.++..|.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++| +|++++|+|++| 
T Consensus        89 ~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p-~g~~~~L~r~vG~  167 (274)
T 3tlf_A           89 YLSTYDQWEAPQEGTPPFRTMAKPVLTAVNGICCGAGMDWVTTTDIVIASEQATFFDPHVSIGLVA-GRELVRVSRVLPR  167 (274)
T ss_dssp             TTCSGGGGSCCCTTCCCTTSCCSCEEEEECSEEEGGGHHHHHHSSEEEEETTCEEECCGGGGTCCC-CHHHHHHTTTSCH
T ss_pred             hhhHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEECcccccCccc-chHHHHHHHHhCH
Confidence            000112222334567778999999999999999999999999999999999999999999999999 999999999999 


Q ss_pred             HHHHHHhhcCC--cccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHH
Q 016290          164 HLGEFLALTGA--RLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDE  241 (392)
Q Consensus       164 ~~a~~L~ltG~--~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~  241 (392)
                      .++++|++||+  +++|+||+++||||++||++++.+.+.+                                       
T Consensus       168 ~~A~~l~ltg~~~~~~A~eA~~~GLv~~vv~~~~l~~~a~~---------------------------------------  208 (274)
T 3tlf_A          168 SIALRMALMGKHERMSAQRAYELGLISEIVEHDRLLERAHE---------------------------------------  208 (274)
T ss_dssp             HHHHHHHHHGGGCCEEHHHHHHHTSSSEEECGGGHHHHHHH---------------------------------------
T ss_pred             HHHHHHHHcCCCCccCHHHHHHCCCCCeecCHHHHHHHHHH---------------------------------------
Confidence            99999999999  9999999999999999999888764443                                       


Q ss_pred             HhCcCCHHHHHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHcCCccHHH
Q 016290          242 CFSKETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIY  321 (392)
Q Consensus       242 ~f~~~~~eei~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~  321 (392)
                                                  ++++|++.||.+++.+|++++.....+++++++.|...+..++.+   +|++
T Consensus       209 ----------------------------~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s---~d~~  257 (274)
T 3tlf_A          209 ----------------------------IADIVNSNAPLAVRGTRLAILKGLNVPLHEAEILAETFRERVLRT---EDAA  257 (274)
T ss_dssp             ----------------------------HHHHHHTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHTS---HHHH
T ss_pred             ----------------------------HHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcC---HHHH
Confidence                                        378999999999999999999999999999999999999999999   9999


Q ss_pred             HHHHHHHhccCCCCCCCCC
Q 016290          322 EGIRALTIEKDNAPKWDPP  340 (392)
Q Consensus       322 eGv~a~l~dK~r~P~w~~~  340 (392)
                      ||++||+ +| |+|+|+++
T Consensus       258 eg~~af~-ek-r~p~f~g~  274 (274)
T 3tlf_A          258 EGPRAFV-EK-RQPNWQCR  274 (274)
T ss_dssp             HHHHHHH-TT-SCCCCCCC
T ss_pred             HHHHHHh-cC-CCCCCCCC
Confidence            9999999 67 99999863

>2ppy_A Enoyl-COA hydratase; beta-oxidation, fatty acid metabol lyase, structural genomics, NPPSFA; 2.16A {Geobacillus kaustophilus}

Probab=100.00  E-value=4e-57  Score=429.45  Aligned_cols=255  Identities=20%  Similarity=0.286  Sum_probs=233.2

Q ss_pred             CCCCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEc-CCCccccCCCchhhccCCCCchh
Q 016290            9 PDEQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKG-VGRAFSAGGDLKMFYDGRNSKDS   87 (392)
Q Consensus         9 ~~~~~V~~~~~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g-~G~~FcaG~Dl~~l~~~~~~~~~   87 (392)
                      ..++.|.++.+++|++|||||| ++|+||.+|+.+|.++|+.++.|+++++|||+| .|++||+|+|++++.. ..  ..
T Consensus         6 ~~~~~i~~~~~~~v~~itlnrp-~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~~g~~F~aG~Dl~~~~~-~~--~~   81 (265)
T 2ppy_A            6 TKKQYLTVFKEDGIAEIHLHIN-KSNSYDLEFYKEFNAAIDDIRFDPDIKVVIVMSDVPKFFSAGADINFLRS-AD--PR   81 (265)
T ss_dssp             EECSSEEEEEETTEEEEEECSS-TTCCBCHHHHHHHHHHHHHHHTCTTCCEEEEEECSTTEEECCBCHHHHTT-SC--HH
T ss_pred             CCCCeEEEEeeCCEEEEEECCC-CCCCCCHHHHHHHHHHHHHHHhCCCcEEEEEEcCCCCeeeeCcCHHHHhc-cc--hh
Confidence            3456799999999999999999 999999999999999999999999999999999 8899999999999865 11  11


Q ss_pred             HHHHHHHH-HHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCe-eeeccccccCccCCchhHHHHhhcch-H
Q 016290           88 CLEVVYRM-YWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKT-VFSTPEASIGFHTDCGFSFIHSRLPG-H  164 (392)
Q Consensus        88 ~~~~~~~~-~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a-~f~~PE~~iGl~P~~G~s~~L~rl~G-~  164 (392)
                      ...+.... ++++..|.++|||+||+|||+|+|||++|+++||+|||++++ +|++||+++|++|++|++++|+|++| .
T Consensus        82 ~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~ag~f~~pe~~~Gl~p~~g~~~~l~~~vG~~  161 (265)
T 2ppy_A           82 FKTQFCLFCNETLDKIARSPQVYIACLEGHTVGGGLEMALACDLRFMGDEAGKIGLPEVSLGVLAGTGGTQRLARLIGYS  161 (265)
T ss_dssp             HHHHHHHHHHHHHHHHHHSSSEEEEEECSEEETHHHHHHHTSSEEEEETTCCCEECCGGGGTCCCTTTHHHHHHHHHCHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCCCEEEEECCEEeeHHHHHHHhCCEEEEeCCCCEEECcccccCCCCCchHHHHHHHHhCHH
Confidence            23344445 678889999999999999999999999999999999999999 99999999999999999999999999 9


Q ss_pred             HHHHHhhcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHhC
Q 016290          165 LGEFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFS  244 (392)
Q Consensus       165 ~a~~L~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~  244 (392)
                      .+++|++||++++|+||+++||||++||++++.+.+.++                                         
T Consensus       162 ~a~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~-----------------------------------------  200 (265)
T 2ppy_A          162 RALDMNITGETITPQEALEIGLVNRVFPQAETRERTREY-----------------------------------------  200 (265)
T ss_dssp             HHHHHHHHCCCBCHHHHHHHTSSSEEECGGGHHHHHHHH-----------------------------------------
T ss_pred             HHHHHHHhCCccCHHHHHHCCCcceecCHHHHHHHHHHH-----------------------------------------
Confidence            999999999999999999999999999998877644443                                         


Q ss_pred             cCCHHHHHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHcCCccHHHHHH
Q 016290          245 KETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGI  324 (392)
Q Consensus       245 ~~~~eei~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eGv  324 (392)
                                                +++|++.||.+++.+|++++.+...++++++..|...+..++.+   +|++||+
T Consensus       201 --------------------------a~~la~~~~~a~~~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~s---~d~~egi  251 (265)
T 2ppy_A          201 --------------------------ARKLANSATYAVSNIKLAIMNGKEMPLNVAIRYEGELQNLLFRS---EDAKEGL  251 (265)
T ss_dssp             --------------------------HHHHHTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHTS---HHHHHHH
T ss_pred             --------------------------HHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCC---HHHHHHH
Confidence                                      78999999999999999999998889999999999999999999   9999999


Q ss_pred             HHHHhccCCCCCCCC
Q 016290          325 RALTIEKDNAPKWDP  339 (392)
Q Consensus       325 ~a~l~dK~r~P~w~~  339 (392)
                      ++|+ +| |+|.|++
T Consensus       252 ~af~-ek-r~p~~~~  264 (265)
T 2ppy_A          252 SAFL-EK-RQPNWKG  264 (265)
T ss_dssp             HHHH-TT-SCCCCCC
T ss_pred             HHHH-cC-CCCCCCC
Confidence            9999 66 9999985

>4f47_A Enoyl-COA hydratase ECHA19; ssgcid, seattle structural genomics center for infectious DI niaid; 1.75A {Mycobacterium marinum}

Probab=100.00  E-value=4.9e-58  Score=438.56  Aligned_cols=258  Identities=24%  Similarity=0.319  Sum_probs=219.3

Q ss_pred             CCCCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhH
Q 016290            9 PDEQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSC   88 (392)
Q Consensus         9 ~~~~~V~~~~~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~   88 (392)
                      .....|+++.+++|++||||||+++|+||.+|+.+|.++|+.++.|++|++|||+|.|++||+|+|++++...... ..+
T Consensus        17 ~~~~~v~~~~~~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~-~~~   95 (278)
T 4f47_A           17 ESGPDALVEQRGHTLIVTMNRPSRRNALSGEMMQIMVEAWDRVDNDPDIRCCILTGAGGYFCAGMDLKAATKKPPG-DSF   95 (278)
T ss_dssp             --CCSEEEEEETTEEEEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCCC------------------
T ss_pred             CCCCceEEEEECCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCcccCCcChHhhhccchh-hhH
Confidence            3456799999999999999999999999999999999999999999999999999999999999999998653221 111


Q ss_pred             HHHHHHHHHHHHHHH---hcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcch-H
Q 016290           89 LEVVYRMYWLCHHIH---TYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-H  164 (392)
Q Consensus        89 ~~~~~~~~~l~~~i~---~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G-~  164 (392)
                      .. ......++..+.   ++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++| .
T Consensus        96 ~~-~~~~~~~~~~l~~~~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~  174 (278)
T 4f47_A           96 KD-GSYDPSRIDALLKGRRLKKPLIAAVEGPAIAGGTEILQGTDIRVAAESAKFGISEAKWSLYPMGGSAVRLVRQIPYT  174 (278)
T ss_dssp             ------CTTCBTTTTBSCCCSSCEEEEECSEEETHHHHHHTTCSEEEEETTCEEECCGGGGTCCCTTSHHHHHHHHSCHH
T ss_pred             HH-HHHHHHHHHHHHHhcCCCCCEEEEECCEEehHHHHHHHhCCEEEEcCCCEEECcccccCCCCCccHHHHHHHHhCHH
Confidence            11 001123444556   999999999999999999999999999999999999999999999999999999999999 9


Q ss_pred             HHHHHhhcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHhC
Q 016290          165 LGEFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFS  244 (392)
Q Consensus       165 ~a~~L~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~  244 (392)
                      ++++|++||++++|+||+++||||++||++++.+.+.++                                         
T Consensus       175 ~a~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~-----------------------------------------  213 (278)
T 4f47_A          175 VACDLLLTGRHITAAEAKEMGLVGHVVPDGQALTKALEI-----------------------------------------  213 (278)
T ss_dssp             HHHHHHHHCCCEEHHHHHHTTSCSEEECTTCHHHHHHHH-----------------------------------------
T ss_pred             HHHHHHHcCCcCCHHHHHHCCCceEeeChhHHHHHHHHH-----------------------------------------
Confidence            999999999999999999999999999999987644443                                         


Q ss_pred             cCCHHHHHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHcCCccHHHHHH
Q 016290          245 KETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGI  324 (392)
Q Consensus       245 ~~~~eei~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eGv  324 (392)
                                                +++|++.||.+++.+|+++++....+++++++.|.+.+..++.+   +|++||+
T Consensus       214 --------------------------a~~la~~~~~a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s---~d~~eg~  264 (278)
T 4f47_A          214 --------------------------AEIIAANGPLAVQAILRTIRETEGMHENEAFKIDTRIGIEVFLS---DDAKEGP  264 (278)
T ss_dssp             --------------------------HHHHHHSCHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHGGGGGS---SHHHHHH
T ss_pred             --------------------------HHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhcC---HHHHHHH
Confidence                                      78999999999999999999999999999999999999999999   9999999


Q ss_pred             HHHHhccCCCCCCCCC
Q 016290          325 RALTIEKDNAPKWDPP  340 (392)
Q Consensus       325 ~a~l~dK~r~P~w~~~  340 (392)
                      +||+ +| |+|+|+++
T Consensus       265 ~Af~-ek-r~p~f~g~  278 (278)
T 4f47_A          265 QAFA-QK-RKPNFQNR  278 (278)
T ss_dssp             HHHH-TT-SCCCCCCC
T ss_pred             HHHh-cC-CCCCCCCC
Confidence            9999 66 99999863

>3qxz_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.35A {Mycobacterium abscessus} SCOP: c.14.1.0

Probab=100.00  E-value=8e-59  Score=441.04  Aligned_cols=257  Identities=18%  Similarity=0.294  Sum_probs=231.6

Q ss_pred             CCCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhHH
Q 016290           10 DEQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCL   89 (392)
Q Consensus        10 ~~~~V~~~~~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~   89 (392)
                      +++.|.++.+++|++||||||+++|+||.+|+.+|.++++.++.|++|++|||||.|++||+|+|++++........  .
T Consensus         5 m~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~--~   82 (265)
T 3qxz_A            5 MVTELHEEIRDGVAVLTLHGPSTRNSFTVELGRQLGAAYQRLDDDPAVRVIVLTGAPPAFCSGAQISAAAETFAAPR--N   82 (265)
T ss_dssp             -CCEEEEEEETTEEEEEEECGGGTSCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTEEECCBCSTTCTTCCCCCC--S
T ss_pred             ccceEEEEEECCEEEEEEcCCccCCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCccccCcChHHHhhccchhH--H
Confidence            35679999999999999999999999999999999999999999999999999999999999999999865322111  1


Q ss_pred             HHHHHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcch-HHHHH
Q 016290           90 EVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HLGEF  168 (392)
Q Consensus        90 ~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G-~~a~~  168 (392)
                      .++.. +.++..|.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++| .++++
T Consensus        83 ~~~~~-~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~A~~  161 (265)
T 3qxz_A           83 PDFSA-SPVQPAAFELRTPVIAAVNGHAIGIGMTLALHADIRILAEEGRYAIPQVRFGVAPDALAHWTLPRLVGTAVAAE  161 (265)
T ss_dssp             SCCCS-CCSSSCGGGSSSCEEEEECSEEETHHHHHHTTSSEEEEETTCCEECCGGGGTSCCCTTHHHHTHHHHHHHHHHH
T ss_pred             HHHHH-HHHHHHHHhCCCCEEEEECCEEehHhHHHHHHCCEEEEcCCCEEECcccccCcCCCccHHHHHHHHhCHHHHHH
Confidence            12222 55677889999999999999999999999999999999999999999999999999999999999999 99999


Q ss_pred             HhhcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHhCcCCH
Q 016290          169 LALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKETV  248 (392)
Q Consensus       169 L~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~  248 (392)
                      |++||++++|+||+++||||++||++++.+.+.                                               
T Consensus       162 l~ltg~~~~A~eA~~~GLv~~vv~~~~l~~~a~-----------------------------------------------  194 (265)
T 3qxz_A          162 LLLTGASFSAQRAVETGLANRCLPAGKVLGAAL-----------------------------------------------  194 (265)
T ss_dssp             HHHHCCCBCHHHHHHHTSCSEEECHHHHHHHHH-----------------------------------------------
T ss_pred             HHHcCCCcCHHHHHHCCCccEeeCHHHHHHHHH-----------------------------------------------
Confidence            999999999999999999999999877665333                                               


Q ss_pred             HHHHHHHHHhhccCCcccHHHHHHHHhhc-CchHHHHHHHHHHHhhhcCHHHH--HHHHHHHHHHHHHcCCccHHHHHHH
Q 016290          249 AEIIKSFEAEAGKEGNGWIGPVLKGLKKS-SPTGLKITLRSVREGREQSLAEC--LKKEFRLTINILRAIISADIYEGIR  325 (392)
Q Consensus       249 eei~~~l~~~~~~~~~~~a~~~~~~l~~~-sp~sl~~tk~~l~~~~~~~l~~~--l~~E~~~~~~~~~~~~~~d~~eGv~  325 (392)
                                          +++++|++. ||.+++.+|+++++....+++++  ++.|...+..++.+   +|++||++
T Consensus       195 --------------------~~a~~la~~~~p~a~~~~K~~l~~~~~~~l~~~~~l~~e~~~~~~~~~s---~d~~egi~  251 (265)
T 3qxz_A          195 --------------------RMAHDIATNVAPESAALTKRLLWDAQMTGMSAAEVAARETADHLRLMGS---QDAAEGPR  251 (265)
T ss_dssp             --------------------HHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTS---THHHHHHH
T ss_pred             --------------------HHHHHHHccCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhCC---hHHHHHHH
Confidence                                347899999 99999999999999988899999  99999999999999   99999999


Q ss_pred             HHHhccCCCCCCCCCC
Q 016290          326 ALTIEKDNAPKWDPPT  341 (392)
Q Consensus       326 a~l~dK~r~P~w~~~~  341 (392)
                      ||+ +| |+|+|++++
T Consensus       252 Af~-ek-r~P~f~g~r  265 (265)
T 3qxz_A          252 AFI-DG-RPPRWAGQR  265 (265)
T ss_dssp             HHH-HT-SCCCCCCC-
T ss_pred             HHH-cC-CCCCCCCCC
Confidence            999 66 999999753

>3r9t_A ECHA1_1; ssgcid, seattle structural genomics center for infectious DI enoyl-COA hydratase, lyase; 1.75A {Mycobacterium avium subsp} SCOP: c.14.1.0 PDB: 3r9s_A 3r0o_A

Probab=100.00  E-value=1.4e-58  Score=439.82  Aligned_cols=260  Identities=26%  Similarity=0.357  Sum_probs=227.5

Q ss_pred             CCCCCCCCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCC-CccccCCCchhhccCCC
Q 016290            5 VVKNPDEQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVG-RAFSAGGDLKMFYDGRN   83 (392)
Q Consensus         5 ~~~~~~~~~V~~~~~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G-~~FcaG~Dl~~l~~~~~   83 (392)
                      +-.|++++.|.++++++|++||||||+++|+||.+|+.+|.++|+.++.|++|++|||||+| ++||+|+|++++.....
T Consensus         2 ~~~m~~~~~v~~~~~~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~   81 (267)
T 3r9t_A            2 PGSMTDAPGALAERRGNVMVITINRPEARNAINAAVSIGVGDALEEAQHDPEVRAVVLTGAGDKSFCAGADLKAIARREN   81 (267)
T ss_dssp             ------CCSEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSSEEECCBCHHHHHTTCC
T ss_pred             CCCCCCCCcEEEEEECCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCceeCCcChHHHhcccc
Confidence            34566778899999999999999999999999999999999999999999999999999999 79999999999875322


Q ss_pred             CchhH-HHHHHHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcc
Q 016290           84 SKDSC-LEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLP  162 (392)
Q Consensus        84 ~~~~~-~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~  162 (392)
                      ..... ..+..  ..+  .+.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++
T Consensus        82 ~~~~~~~~~~~--~~~--~~~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~v  157 (267)
T 3r9t_A           82 LYHPDHPEWGF--AGY--VRHFIDKPTIAAVNGTALGGGTELALASDLVVADERAQFGLPEVKRGLIAAAGGVFRIAEQL  157 (267)
T ss_dssp             CSCTTCGGGCG--GGT--TTCCCSSCEEEEECSEECTHHHHHHHHSSEEEEETTCEECCGGGGTTCCCTTTHHHHHHHHS
T ss_pred             hhhHHHHhHHH--HHH--HHHhCCCCEEEEECCEEEhHHHHHHHhCCEEEEcCCCEEECcccccCCCCCccHHHHHHHHc
Confidence            11100 01100  111  22489999999999999999999999999999999999999999999999999999999999


Q ss_pred             h-HHHHHHhhcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHH
Q 016290          163 G-HLGEFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDE  241 (392)
Q Consensus       163 G-~~a~~L~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~  241 (392)
                      | .++++|+|||++++|+||+++||||++||++++.+.+.++                                      
T Consensus       158 G~~~A~~l~ltg~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~--------------------------------------  199 (267)
T 3r9t_A          158 PRKVAMRLLLTGEPLSAAAARDWGLINEVVEAGSVLDAALAL--------------------------------------  199 (267)
T ss_dssp             CHHHHHHHHHHCCCEEHHHHHHHTSSSEEECTTCHHHHHHHH--------------------------------------
T ss_pred             CHHHHHHHHHcCCCCCHHHHHHCCCccEEcChhHHHHHHHHH--------------------------------------
Confidence            9 9999999999999999999999999999999987654444                                      


Q ss_pred             HhCcCCHHHHHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHH---HHHhhhcCHHHHHHHHHHHHHHHHHcCCcc
Q 016290          242 CFSKETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRS---VREGREQSLAECLKKEFRLTINILRAIISA  318 (392)
Q Consensus       242 ~f~~~~~eei~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~---l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~  318 (392)
                                                   +++|++.||.+++.+|++   ++.+...+++++++.|...+..++.+   +
T Consensus       200 -----------------------------a~~la~~~p~a~~~~K~~~~~l~~~~~~~l~~~l~~e~~~~~~~~~s---~  247 (267)
T 3r9t_A          200 -----------------------------ASAITVNAPLSVQASKRIAYGVDDGVVVGDEPGWDRTMREMRALLKS---E  247 (267)
T ss_dssp             -----------------------------HHHHHTSCHHHHHHHHHHHTTEETTEEGGGHHHHHHHHHHHHHHTTS---S
T ss_pred             -----------------------------HHHHHhCChHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCC---H
Confidence                                         789999999999999999   99888889999999999999999999   9


Q ss_pred             HHHHHHHHHHhccCCCCCCCCC
Q 016290          319 DIYEGIRALTIEKDNAPKWDPP  340 (392)
Q Consensus       319 d~~eGv~a~l~dK~r~P~w~~~  340 (392)
                      |++||++||+ +| |+|+|+++
T Consensus       248 d~~eg~~AF~-ek-R~P~f~g~  267 (267)
T 3r9t_A          248 DAKEGPRAFA-EK-REPVWQAR  267 (267)
T ss_dssp             HHHHHHHHHH-TT-SCCCCCCC
T ss_pred             HHHHHHHHHH-cC-CCCCCCCC
Confidence            9999999999 66 99999863

>3qre_A Enoyl-COA hydratase, ECHA12_1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.40A {Mycobacterium marinum M}

Probab=100.00  E-value=6.9e-59  Score=448.09  Aligned_cols=261  Identities=21%  Similarity=0.280  Sum_probs=186.2

Q ss_pred             CCcEEEEEeC-CEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccC--CCCc-h
Q 016290           11 EQVVLGEEIG-NVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDG--RNSK-D   86 (392)
Q Consensus        11 ~~~V~~~~~~-~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~--~~~~-~   86 (392)
                      ++.|++++++ +|++||||||+++|+||.+|+.+|.++|+.++.|++|++|||||.|++||+|+|++++...  .... .
T Consensus        28 ~~~v~~~~~~~~Va~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~G~~FcaG~Dl~~~~~~~~~~~~~~  107 (298)
T 3qre_A           28 QDAVLYEATPGGVAIITFNRADRLNAWGPDLAAGFYAAIDRAEADPGIRVIVLTGRGRGFCAGAYLGSADAAAGYDKTMA  107 (298)
T ss_dssp             CCSEEEEECTTSEEEEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSEECC----------------
T ss_pred             CCeEEEEEeCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCcccCcCHHHHhhccccccccc
Confidence            5779999999 9999999999999999999999999999999999999999999999999999999998641  1111 0


Q ss_pred             ---hHHHHHHHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcch
Q 016290           87 ---SCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG  163 (392)
Q Consensus        87 ---~~~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G  163 (392)
                         ....+....+.++..|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|
T Consensus       108 ~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG  187 (298)
T 3qre_A          108 KAKDANLADLVGERPPHFVTMLRKPVIAAINGPCVGIGLTQALMCDVRFAAAGAKFAAVFARRGLIAEFGISWILPRLTS  187 (298)
T ss_dssp             -------------CCTTGGGGSSSCEEEEECSCEETHHHHHHHHSSEEEEETTCEEECCCCHHHHHCTTSHHHHHHHHSC
T ss_pred             cchhHHHHHHHHHHHHHHHHhCCCCEEEEECCceeecchHHHhhCCEEEEcCCCEEECcccccCCCcchhHHHHHHHhcC
Confidence               11112222345677889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             -HHHHHHhhcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHH
Q 016290          164 -HLGEFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDEC  242 (392)
Q Consensus       164 -~~a~~L~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~  242 (392)
                       .++++|++||++++|+||+++||||++||.+++.+.+.++                                       
T Consensus       188 ~~~A~ellltg~~i~A~eA~~~GLV~~vv~~~~l~~~a~~~---------------------------------------  228 (298)
T 3qre_A          188 WAVALDLLLSGRTFLAEEAAQLGLVKEVVTPEQLMPRALEY---------------------------------------  228 (298)
T ss_dssp             HHHHHHHHHHCCEEEHHHHHHTTSCSEEECGGGHHHHHHHH---------------------------------------
T ss_pred             HHHHHHHHHcCCCCCHHHHHHcCCCeEecCHHHHHHHHHHH---------------------------------------
Confidence             9999999999999999999999999999999887654444                                       


Q ss_pred             hCcCCHHHHHHHHHHhhccCCcccHHHHHHHHhhc-CchHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHcCCccHHH
Q 016290          243 FSKETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKS-SPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIY  321 (392)
Q Consensus       243 f~~~~~eei~~~l~~~~~~~~~~~a~~~~~~l~~~-sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~  321 (392)
                                                  +++|++. ||.+++.+|+++++....++.+.+..|...+..++.+   +|++
T Consensus       229 ----------------------------A~~la~~~~p~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s---~d~~  277 (298)
T 3qre_A          229 ----------------------------AEDIARYCSPSSMAVIKRQVYGDATRDVVEATSHAEVLLREAMPR---PDVI  277 (298)
T ss_dssp             ----------------------------HHHHHHHSCHHHHHHHHHHHHGGGGC--------------------------
T ss_pred             ----------------------------HHHHHccCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhCC---HHHH
Confidence                                        7889998 9999999999999999999999999999999999999   9999


Q ss_pred             HHHHHHHhccCCCCCCCCCCCC
Q 016290          322 EGIRALTIEKDNAPKWDPPTLD  343 (392)
Q Consensus       322 eGv~a~l~dK~r~P~w~~~~l~  343 (392)
                      ||++||+ +| |+|+|+++..+
T Consensus       278 Egv~AF~-ek-R~P~f~~~~~~  297 (298)
T 3qre_A          278 EGIVSFL-EK-RPPQFPSLTSS  297 (298)
T ss_dssp             ----------------------
T ss_pred             HHHHHHH-cC-CCCCCCCCCCC
Confidence            9999999 66 99999987543

>2vx2_A Enoyl-COA hydratase domain-containing protein 3; isomerase, fatty acid metabolism, transit peptide, lipid Met crontonase, mitochondrion, CAsp; 2.3A {Homo sapiens}

Probab=100.00  E-value=3.1e-57  Score=434.50  Aligned_cols=257  Identities=21%  Similarity=0.324  Sum_probs=233.8

Q ss_pred             CCCCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhH
Q 016290            9 PDEQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSC   88 (392)
Q Consensus         9 ~~~~~V~~~~~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~   88 (392)
                      +....|.++.+++|++||||||+++|+||.+|+.+|.++|+.++.|+++++|||||.|++||+|+|++++..... ....
T Consensus        30 ~~~~~v~~~~~~~V~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~-~~~~  108 (287)
T 2vx2_A           30 SEPRPTSARQLDGIRNIVLSNPKKRNTLSLAMLKSLQSDILHDADSNDLKVIIISAEGPVFSSGHDLKELTEEQG-RDYH  108 (287)
T ss_dssp             --CCSEEEEEETTEEEEEECCGGGTTCCCHHHHHHHHHHHHTTTTCTTCCEEEEEESSSEEECCSCCC-CCGGGC-HHHH
T ss_pred             CCCcceEEEEECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEECCCCCccCCcCHHHHhcccc-hhHH
Confidence            444679999999999999999999999999999999999999999999999999999999999999998764221 2222


Q ss_pred             HHHHHHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcch-HHHH
Q 016290           89 LEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HLGE  167 (392)
Q Consensus        89 ~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G-~~a~  167 (392)
                      ..++...++++..|.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|+++ |+|++| .+++
T Consensus       109 ~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~p~~g~~~-L~r~vG~~~A~  187 (287)
T 2vx2_A          109 AEVFQTCSKVMMHIRNHPVPVIAMVNGLATAAGCQLVASCDIAVASDKSSFATPGVNVGLFCSTPGVA-LARAVPRKVAL  187 (287)
T ss_dssp             HHHHHHHHHHHHHHHTCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCHHHHHH-HHTTSCHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCCCEEEEECCEEEcHHHHHHHhCCEEEEcCCCEEECchhhhCCCCchHHHH-HHHHhhHHHHH
Confidence            45566677888999999999999999999999999999999999999999999999999999999999 999999 9999


Q ss_pred             HHhhcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHhCcCC
Q 016290          168 FLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKET  247 (392)
Q Consensus       168 ~L~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~~~  247 (392)
                      +|++||++++|+||+++||||++||++++.+.+.++                                            
T Consensus       188 ~llltg~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~--------------------------------------------  223 (287)
T 2vx2_A          188 EMLFTGEPISAQEALLHGLLSKVVPEAELQEETMRI--------------------------------------------  223 (287)
T ss_dssp             HHHHHCCCEEHHHHHHHTSCSEEECGGGHHHHHHHH--------------------------------------------
T ss_pred             HHHHhCCCCCHHHHHHCCCcceecCHHHHHHHHHHH--------------------------------------------
Confidence            999999999999999999999999998887644444                                            


Q ss_pred             HHHHHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHcCCccHHHHHHHHH
Q 016290          248 VAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGIRAL  327 (392)
Q Consensus       248 ~eei~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eGv~a~  327 (392)
                                             +++|++.||.+++.+|++++++...++++++..|...+..++.+   +|++||+++|
T Consensus       224 -----------------------a~~la~~~p~a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s---~d~~egi~af  277 (287)
T 2vx2_A          224 -----------------------ARKIASLSRPVVSLGKATFYKQLPQDLGTAYYLTSQAMVDNLAL---RDGQEGITAF  277 (287)
T ss_dssp             -----------------------HHHHHTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHTS---HHHHHHHHHH
T ss_pred             -----------------------HHHHHcCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCC---HHHHHHHHHH
Confidence                                   78999999999999999999998889999999999999999999   9999999999


Q ss_pred             HhccCCCCCCCC
Q 016290          328 TIEKDNAPKWDP  339 (392)
Q Consensus       328 l~dK~r~P~w~~  339 (392)
                      + +| |+|+|++
T Consensus       278 ~-ek-r~p~f~g  287 (287)
T 2vx2_A          278 L-QK-RKPVWSH  287 (287)
T ss_dssp             H-TT-SCCCCCC
T ss_pred             H-cC-CCCCCCC
Confidence            9 66 9999974

>1dci_A Dienoyl-COA isomerase; lyase; 1.50A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2vre_A

Probab=100.00  E-value=5.4e-57  Score=430.79  Aligned_cols=258  Identities=22%  Similarity=0.317  Sum_probs=230.7

Q ss_pred             CCcEEEEE-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCC--C--Cc
Q 016290           11 EQVVLGEE-IGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGR--N--SK   85 (392)
Q Consensus        11 ~~~V~~~~-~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~--~--~~   85 (392)
                      +..|.+++ +++|++||||||+++|+||.+|+.+|.++|+.++.|+++++|||||.|++||+|+|++++....  .  ..
T Consensus         2 ~~~v~~~~~~~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~   81 (275)
T 1dci_A            2 YESIQVTSAQKHVLHVQLNRPEKRNAMNRAFWRELVECFQKISKDSDCRAVVVSGAGKMFTSGIDLMDMASDILQPPGDD   81 (275)
T ss_dssp             CSSEEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEEESTTCSBCCBCHHHHHHHHTSCCCSS
T ss_pred             CceEEEEEcCCCEEEEEECCCcccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCccCCcChHHHhhcccccccch
Confidence            45688888 6789999999999999999999999999999999999999999999999999999999876421  0  01


Q ss_pred             -----hhHHHHHHHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhh
Q 016290           86 -----DSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSR  160 (392)
Q Consensus        86 -----~~~~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~r  160 (392)
                           .....++....+++..|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r  161 (275)
T 1dci_A           82 VARIAWYLRDLISRYQKTFTVIEKCPKPVIAAIHGGCIGGGVDLISACDIRYCTQDAFFQVKEVDVGLAADVGTLQRLPK  161 (275)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHSSSCEEEEECSEEETHHHHHHTTSSEEEEETTCEEECCGGGGTSCCCSSHHHHGGG
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHhCCCCEEEEECCeeeHHHHHHHHhCCEEEEeCCCEEeCcccccCCCCCccHHHHHHH
Confidence                 011234445567888999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cch--HHHHHHhhcCCcccHHHHHHcCccceecCC-CChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHH
Q 016290          161 LPG--HLGEFLALTGARLNGKELVAAGLATHFVPS-EKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQS  237 (392)
Q Consensus       161 l~G--~~a~~L~ltG~~l~a~eA~~~GLv~~vv~~-~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  237 (392)
                      ++|  .++++|++||++++|+||+++||||++||+ +++.+.+.                                    
T Consensus       162 ~vG~~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~~l~~~a~------------------------------------  205 (275)
T 1dci_A          162 VIGNRSLVNELTFTARKMMADEALDSGLVSRVFPDKDVMLNAAF------------------------------------  205 (275)
T ss_dssp             TCSCHHHHHHHHHHCCEEEHHHHHHHTSSSEEESSHHHHHHHHH------------------------------------
T ss_pred             HhCcHHHHHHHHHcCCCCCHHHHHHcCCcceecCChHHHHHHHH------------------------------------
Confidence            999  599999999999999999999999999998 66654333                                    


Q ss_pred             HHHHHhCcCCHHHHHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHcCCc
Q 016290          238 IIDECFSKETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIIS  317 (392)
Q Consensus       238 ~i~~~f~~~~~eei~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~  317 (392)
                                                     +++++|+++||.+++.+|++++++...++++++..|...+..++.+   
T Consensus       206 -------------------------------~~a~~la~~~p~a~~~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~s---  251 (275)
T 1dci_A          206 -------------------------------ALAADISSKSPVAVQGSKINLIYSRDHSVDESLDYMATWNMSMLQT---  251 (275)
T ss_dssp             -------------------------------HHHHHHHHSCHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTSS---
T ss_pred             -------------------------------HHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhcC---
Confidence                                           3478999999999999999999998889999999999999999888   


Q ss_pred             cHHHHHHHHHHhccC--CCCCCCC
Q 016290          318 ADIYEGIRALTIEKD--NAPKWDP  339 (392)
Q Consensus       318 ~d~~eGv~a~l~dK~--r~P~w~~  339 (392)
                      +|++||++||+ +|+  |+|+|++
T Consensus       252 ~d~~eg~~af~-ek~~~r~p~f~~  274 (275)
T 1dci_A          252 QDIIKSVQAAM-EKKDSKSITFSK  274 (275)
T ss_dssp             HHHHHHHHHHH-TTCCGGGCCCCC
T ss_pred             HHHHHHHHHHH-hcCCCCCCCCCC
Confidence            99999999999 665  8999985

>3lke_A Enoyl-COA hydratase; nysgrc, target 112 structural genomics, PSI-2, protein structure initiative; 1.70A {Bacillus halodurans}

Probab=100.00  E-value=1.8e-57  Score=431.34  Aligned_cols=257  Identities=21%  Similarity=0.278  Sum_probs=228.7

Q ss_pred             CCCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCcc-ccCCCchhhcc--CCCCch
Q 016290           10 DEQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAF-SAGGDLKMFYD--GRNSKD   86 (392)
Q Consensus        10 ~~~~V~~~~~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~F-caG~Dl~~l~~--~~~~~~   86 (392)
                      +++.|+++++++|++||||||+++|+||.+|+.+|.++++.++.|+++++|||||.|++| |+|+|++++..  ......
T Consensus         2 s~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FF~aG~Dl~~~~~~~~~~~~~   81 (263)
T 3lke_A            2 SLSYVHTEIQNDALYITLDYPEKKNGLDAELGTSLLEAIRAGNNETSIHSIILQSKHRAYFSSGPRLEDLLICASDQSDV   81 (263)
T ss_dssp             -CCSEEEEECSSEEEEEECCGGGTTBCCHHHHHHHHHHHHHHHHCSSCCEEEEEESCTTEEECBSCHHHHHHHHHCSSSH
T ss_pred             CCcEEEEEEECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCceEecCcCHHHHHhhcccCCHH
Confidence            567799999999999999999999999999999999999999999999999999999989 99999999865  212223


Q ss_pred             hHHHHHHHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcch-HH
Q 016290           87 SCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HL  165 (392)
Q Consensus        87 ~~~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G-~~  165 (392)
                      ....++...++++..|.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++| .+
T Consensus        82 ~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~~~vG~~~  161 (263)
T 3lke_A           82 RLREVLHVLNHCVLEIFTSPKVTVALINGYAYGGGFNMMLACDRRIALRRAKFLENFHKMGISPDLGASYFLPRIIGYEQ  161 (263)
T ss_dssp             HHHHHHHHHHHHHHHHHTCSSEEEEEECSEEETHHHHGGGGSSEEEEETTCEEECCHHHHTCCCCTTHHHHHHHHHCHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCEEEEECCEeeHHHHHHHHHCCEEEEcCCCEEeCchHhhCCCCCccHHHHHHHHhCHHH
Confidence            34567777788999999999999999999999999999999999999999999999999999999999999999999 99


Q ss_pred             HHHHhhcCCcccHHHHHHcCccceecC-CCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHhC
Q 016290          166 GEFLALTGARLNGKELVAAGLATHFVP-SEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFS  244 (392)
Q Consensus       166 a~~L~ltG~~l~a~eA~~~GLv~~vv~-~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~  244 (392)
                      +++|++||++++|+||+++||||++|| .+++.+.+.                                           
T Consensus       162 A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~~l~~~a~-------------------------------------------  198 (263)
T 3lke_A          162 TMNLLLEGKLFTSEEALRLGLIQEICENKQELQERVK-------------------------------------------  198 (263)
T ss_dssp             HHHHHHHCCCEEHHHHHHHTSSSEEESSHHHHHHHHH-------------------------------------------
T ss_pred             HHHHHHhCCCcCHHHHHHcCCCcEecCChhHHHHHHH-------------------------------------------
Confidence            999999999999999999999999999 777665443                                           


Q ss_pred             cCCHHHHHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHcCCccHHHHHH
Q 016290          245 KETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGI  324 (392)
Q Consensus       245 ~~~~eei~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eGv  324 (392)
                                              +++++|++.||.+++.+|++++.....+++++++.|...+..++.+   +|++||+
T Consensus       199 ------------------------~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s---~d~~e~~  251 (263)
T 3lke_A          199 ------------------------NYLKAVSEGYVPAIAATKKLLKGKAAEELKQQLEQETEELVALFKQ---TEIKKRL  251 (263)
T ss_dssp             ------------------------HHHHHHHTSCHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTS---HHHHHHH
T ss_pred             ------------------------HHHHHHHhCCHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHhcC---HHHHHHH
Confidence                                    3378999999999999999999998889999999999999999999   9999999


Q ss_pred             HHHHhccCCCCCCC
Q 016290          325 RALTIEKDNAPKWD  338 (392)
Q Consensus       325 ~a~l~dK~r~P~w~  338 (392)
                      ++|+ +| ++|.|.
T Consensus       252 ~~~~-~~-~~~~~~  263 (263)
T 3lke_A          252 EALV-EG-HHHHHH  263 (263)
T ss_dssp             HHC-----------
T ss_pred             Hhhh-cc-CCCCCC
Confidence            9999 55 888884

>3trr_A Probable enoyl-COA hydratase/isomerase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.09A {Mycobacterium abscessus}

Probab=100.00  E-value=1.6e-57  Score=429.94  Aligned_cols=249  Identities=24%  Similarity=0.360  Sum_probs=227.0

Q ss_pred             CcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhHHHH
Q 016290           12 QVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEV   91 (392)
Q Consensus        12 ~~V~~~~~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~~~   91 (392)
                      +.|+++++++|++||||||+++|+||.+|+.+|.++++.++.|+++++|||||.|++||+|+|++++......... ..+
T Consensus         7 ~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~-~~~   85 (256)
T 3trr_A            7 DEVLIEQRDRVLLITINRPDARNAVNRAVSQGLAAAADQLDSSADLSVAIITGAGGNFCAGMDLKAFVSGEAVLSE-RGL   85 (256)
T ss_dssp             CSEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEEGGGCCCCCBCHHHHHHTCCCEET-TEE
T ss_pred             CceEEEEECCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCceecCcCHHHhccccchhhh-hhh
Confidence            5699999999999999999999999999999999999999999999999999999999999999998753221110 111


Q ss_pred             HHHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcch-HHHHHHh
Q 016290           92 VYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HLGEFLA  170 (392)
Q Consensus        92 ~~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G-~~a~~L~  170 (392)
                           .+ ..+ ++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++| .++++|+
T Consensus        86 -----~~-~~~-~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~  158 (256)
T 3trr_A           86 -----GF-TNV-PPRKPIIAAVEGFALAGGTELVLSCDLVVAGRSAKFGIPEVKRGLVAGAGGLLRLPNRIPYQVAMELA  158 (256)
T ss_dssp             -----TT-SSS-CCSSCEEEEECSBCCTHHHHHHHTSSEEEEETTCEECCCGGGGTCCCCSSHHHHHHHHSCHHHHHHHH
T ss_pred             -----hH-HHh-cCCCCEEEEECCeeeechhHHHHhCCEEEECCCCEEEehhhccCCCCCccHHHHHHHHhCHHHHHHHH
Confidence                 12 233 899999999999999999999999999999999999999999999999999999999999 9999999


Q ss_pred             hcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHhCcCCHHH
Q 016290          171 LTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKETVAE  250 (392)
Q Consensus       171 ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~ee  250 (392)
                      |||++++|+||+++||||++||++++.+.+.++                                               
T Consensus       159 ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~-----------------------------------------------  191 (256)
T 3trr_A          159 LTGESFTAEDAAKYGFINRLVDDGQALDTALEL-----------------------------------------------  191 (256)
T ss_dssp             HHCCCEEHHHHGGGTCCSEEECTTCHHHHHHHH-----------------------------------------------
T ss_pred             HhCCCcCHHHHHHCCCeeEecChHHHHHHHHHH-----------------------------------------------
Confidence            999999999999999999999999987644443                                               


Q ss_pred             HHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHhc
Q 016290          251 IIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGIRALTIE  330 (392)
Q Consensus       251 i~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eGv~a~l~d  330 (392)
                                          +++|++.||.+++.+|+++++....+++++++.|.+.+..++.+   +|++||++||+ +
T Consensus       192 --------------------a~~la~~~~~a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s---~d~~eg~~af~-e  247 (256)
T 3trr_A          192 --------------------AAKITANGPLAVAATKRIIIESASWAPEEAFAKQGEILMPIFVS---EDAKEGAKAFA-E  247 (256)
T ss_dssp             --------------------HHHHHTSCHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHTS---HHHHHHHHHHH-T
T ss_pred             --------------------HHHHHcCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhCC---HHHHHHHHHHh-c
Confidence                                78999999999999999999999999999999999999999999   99999999999 6


Q ss_pred             cCCCCCCCCC
Q 016290          331 KDNAPKWDPP  340 (392)
Q Consensus       331 K~r~P~w~~~  340 (392)
                      | |+|+|+++
T Consensus       248 k-r~p~f~g~  256 (256)
T 3trr_A          248 K-RAPVWQGK  256 (256)
T ss_dssp             T-SCCCCCCC
T ss_pred             C-CCCCCCCC
Confidence            6 99999873

>2j5i_A P-hydroxycinnamoyl COA hydratase/lyase; vanillin, aldolase, crotonase, coenzyme-A; 1.8A {Pseudomonas fluorescens} PDB: 2j5i_B 2vss_A* 2j5i_I 2vss_F* 2vsu_A* 2vss_E* 2vsu_F* 2vsu_E* 2vsu_C*

Probab=100.00  E-value=2.5e-57  Score=433.13  Aligned_cols=263  Identities=20%  Similarity=0.297  Sum_probs=209.6

Q ss_pred             CCCCCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCC--CCc
Q 016290            8 NPDEQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGR--NSK   85 (392)
Q Consensus         8 ~~~~~~V~~~~~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~--~~~   85 (392)
                      ...+..|.++.+++|++||||||+++|+||.+|+.+|.++|+.++.|+++++|||||.|++||+|+|++++....  ...
T Consensus         5 ~~~~~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~   84 (276)
T 2j5i_A            5 EGRWKTVKVEIEDGIAFVILNRPEKRNAMSPTLNREMIDVLETLEQDPAAGVLVLTGAGEAWTAGMDLKEYFREVDAGPE   84 (276)
T ss_dssp             TTCCSSEEEEEETEEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHTCTTEEEEEEEESTTCSBCCBCHHHHHHHHHHSCT
T ss_pred             cCCCceEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCCcCCcChhhHhhccccchh
Confidence            445678999999999999999999999999999999999999999999999999999999999999999875311  111


Q ss_pred             hhHHHHHHHHHHH-HHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcch-
Q 016290           86 DSCLEVVYRMYWL-CHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-  163 (392)
Q Consensus        86 ~~~~~~~~~~~~l-~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G-  163 (392)
                      .....+....+.+ +..|.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++| 
T Consensus        85 ~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~  164 (276)
T 2j5i_A           85 ILQEKIRREASQWQWKLLRMYAKPTIAMVNGWCFGGGFSPLVACDLAICADEATFGLSEINWGIPPGNLVSKAMADTVGH  164 (276)
T ss_dssp             THHHHHHHHHHHHHTTTTTTCSSCEEEEECSCEEGGGHHHHHHSSEEEEETTCEEECGGGGGTCCCCTTHHHHHHHHSCH
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehhHHHHHHhCCEEEEcCCCEEeCcccccCCCCcchHHHHHHHHhCH
Confidence            1112333333443 66789999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             HHHHHHhhcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHh
Q 016290          164 HLGEFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECF  243 (392)
Q Consensus       164 ~~a~~L~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f  243 (392)
                      ..+++|++||++++|+||+++||||++||++++.+.+.+                                         
T Consensus       165 ~~A~~l~ltg~~~~A~eA~~~GLv~~vv~~~~l~~~a~~-----------------------------------------  203 (276)
T 2j5i_A          165 RQSLMYIMTGKTFGGQKAAEMGLVNESVPLAQLREVTIE-----------------------------------------  203 (276)
T ss_dssp             HHHHHHHHHCCEEEHHHHHHHTSSSEEECHHHHHHHHHH-----------------------------------------
T ss_pred             HHHHHHHHhCCcccHHHHHHcCCccEeeCHHHHHHHHHH-----------------------------------------
Confidence            999999999999999999999999999998777654443                                         


Q ss_pred             CcCCHHHHHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHH--HHcCCcc-HH
Q 016290          244 SKETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINI--LRAIISA-DI  320 (392)
Q Consensus       244 ~~~~~eei~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~--~~~~~~~-d~  320 (392)
                                                ++++|++.||.+++.+|+++++....++++++..|...+..+  +.+   + |+
T Consensus       204 --------------------------~a~~la~~~p~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~s---~~d~  254 (276)
T 2j5i_A          204 --------------------------LARNLLEKNPVVLRAAKHGFKRCRELTWEQNEDYLYAKLDQSRLLDT---EGGR  254 (276)
T ss_dssp             --------------------------HHHHHHTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHC--------
T ss_pred             --------------------------HHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcCC---hHHH
Confidence                                      378999999999999999999998889999999888876665  447   8 99


Q ss_pred             HHHHHHHHhccC-CCCCCCCCC
Q 016290          321 YEGIRALTIEKD-NAPKWDPPT  341 (392)
Q Consensus       321 ~eGv~a~l~dK~-r~P~w~~~~  341 (392)
                      +||++||+ +|+ |+|+|++.+
T Consensus       255 ~eg~~AF~-ekr~r~p~~~~~~  275 (276)
T 2j5i_A          255 EQGMKQFL-DDKSIKPGLQAYK  275 (276)
T ss_dssp             ----------------------
T ss_pred             HHHHHHHH-hcccCCCCcccCC
Confidence            99999999 675 699998753

>3qxi_A Enoyl-COA hydratase ECHA1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.20A {Mycobacterium marinum}

Probab=100.00  E-value=3.1e-57  Score=430.03  Aligned_cols=254  Identities=24%  Similarity=0.362  Sum_probs=220.7

Q ss_pred             CCCCCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchh
Q 016290            8 NPDEQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDS   87 (392)
Q Consensus         8 ~~~~~~V~~~~~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~   87 (392)
                      .++++.|+++++++|++||||||+++|+||.+|+.+|.++|+.++.|++|++|||||.|++||+|+|++++.........
T Consensus        11 ~~~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~   90 (265)
T 3qxi_A           11 GDTEPEVLVEQRDRILIITINRPKAKNSVNAAVSRALADAMDRLDADAGLSVGILTGAGGSFCAGMDLKAFARGENVVVE   90 (265)
T ss_dssp             ----CCEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCCCCSBC-------CCCEET
T ss_pred             CCCCCeEEEEEECCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCCCCeeCCCChhhhhccchhhhh
Confidence            44567899999999999999999999999999999999999999999999999999999999999999998653221111


Q ss_pred             HHHHHHHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcch-HHH
Q 016290           88 CLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HLG  166 (392)
Q Consensus        88 ~~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G-~~a  166 (392)
                      ...+     . +..+.. +||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++| .++
T Consensus        91 ~~~~-----~-~~~~~~-~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a  163 (265)
T 3qxi_A           91 GRGL-----G-FTERPP-AKPLIAAVEGYALAGGTELALATDLIVAARDSAFGIPEVKRGLVAGGGGLLRLPERIPYAIA  163 (265)
T ss_dssp             TTEE-----T-TTTSCC-SSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCCSSHHHHHHHHSCHHHH
T ss_pred             hhhh-----h-HHHhhC-CCCEEEEECCceeHHHHHHHHhCCEEEEcCCCEEECcccccCcCCcccHHHHHHHHhCHHHH
Confidence            0100     1 222333 9999999999999999999999999999999999999999999999999999999999 999


Q ss_pred             HHHhhcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHhCcC
Q 016290          167 EFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKE  246 (392)
Q Consensus       167 ~~L~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~~  246 (392)
                      ++|+|||++++|+||+++||||++||++++.+.+.++                                           
T Consensus       164 ~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~-------------------------------------------  200 (265)
T 3qxi_A          164 MELALTGDNLSAERAHALGMVNVLAEPGAALDAAIAL-------------------------------------------  200 (265)
T ss_dssp             HHHHHHCCCEEHHHHHHTTSCSEEECTTCHHHHHHHH-------------------------------------------
T ss_pred             HHHHHcCCCcCHHHHHHCCCccEeeChhHHHHHHHHH-------------------------------------------
Confidence            9999999999999999999999999999987654444                                           


Q ss_pred             CHHHHHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHcCCccHHHHHHHH
Q 016290          247 TVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGIRA  326 (392)
Q Consensus       247 ~~eei~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eGv~a  326 (392)
                                              +++|++.||.+++.+|+++++....+++++++.|...+..++.+   +|++||++|
T Consensus       201 ------------------------a~~la~~~p~a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s---~d~~eg~~a  253 (265)
T 3qxi_A          201 ------------------------AEKITANGPLAVAATKRIITESRGWSLDTRFAQQMKILFPIFTS---NDAKEGAIA  253 (265)
T ss_dssp             ------------------------HHHHHTSCHHHHHHHHHHHHHHTTCCTTTHHHHHHHHHHHHHHC---HHHHHHHHH
T ss_pred             ------------------------HHHHHcCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcC---HHHHHHHHH
Confidence                                    78999999999999999999999899999999999999999999   999999999


Q ss_pred             HHhccCCCCCCCCC
Q 016290          327 LTIEKDNAPKWDPP  340 (392)
Q Consensus       327 ~l~dK~r~P~w~~~  340 (392)
                      |+ +| |+|+|+++
T Consensus       254 f~-ek-r~p~f~g~  265 (265)
T 3qxi_A          254 FA-EK-RPPRWTGT  265 (265)
T ss_dssp             HH-TT-SCCCCCCC
T ss_pred             HH-cC-CCCCCCCC
Confidence            99 66 99999863

>2fbm_A Y chromosome chromodomain protein 1, telomeric IS; acetyltransferase, structural genomics, structural genomics consortium, SGC, unknown function; 2.28A {Homo sapiens} SCOP: c.14.1.3

Probab=100.00  E-value=9e-57  Score=431.96  Aligned_cols=261  Identities=20%  Similarity=0.274  Sum_probs=224.3

Q ss_pred             CCCCCCcEEEEEeCCEEEEEEc-CCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCC-C
Q 016290            7 KNPDEQVVLGEEIGNVRLVTLN-RPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRN-S   84 (392)
Q Consensus         7 ~~~~~~~V~~~~~~~v~~itLn-rp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~-~   84 (392)
                      ....+..|.++.+++|++|||| ||+++|+||.+|+.+|.++|+.++.|+. ++|||||.|++||+|+|++++..... .
T Consensus        18 ~~~~~~~v~~~~~~~v~~itln~rp~~~Nal~~~m~~~L~~al~~~~~d~~-r~vVltg~G~~FcaG~Dl~~~~~~~~~~   96 (291)
T 2fbm_A           18 GSSTYRDIVVKKEDGFTQIVLSTRSTEKNALNTEVIKEIVNALNSAAADDS-KLVLFSAAGSVFCCGLDFGYFVKHLRNN   96 (291)
T ss_dssp             ---CCSSEEEEECSSEEEEEECCSSSSTTCBCHHHHHHHHHHHHHHHHSSC-SEEEEEECSSCSBCCBCHHHHHHHHHHC
T ss_pred             CCCCcceEEEEEeCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHhcCCC-eEEEEECCCCCccCCcCHHHHHhccccc
Confidence            3566778999999999999999 7999999999999999999999999875 99999999999999999998754111 0


Q ss_pred             -chhHHHHHHHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcch
Q 016290           85 -KDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG  163 (392)
Q Consensus        85 -~~~~~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G  163 (392)
                       ......+......++..|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|
T Consensus        97 ~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~p~~g~~~~L~r~vG  176 (291)
T 2fbm_A           97 RNTASLEMVDTIKNFVNTFIQFKKPIVVSVNGPAIGLGASILPLCDLVWANEKAWFQTPYTTFGQSPDGCSSITFPKMMG  176 (291)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCCSCEEEEECSCEETHHHHTGGGSSEEEEETTCEEECCHHHHTCCCCTTHHHHHHHHHC
T ss_pred             chhHHHHHHHHHHHHHHHHHhCCCCEEEEECCeeecHHHHHHHhCCEEEEeCCCEEECcHHhcCCCCcccHHHHHHHHHh
Confidence             1112344455567888999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             -HHHHHHhhcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHH
Q 016290          164 -HLGEFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDEC  242 (392)
Q Consensus       164 -~~a~~L~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~  242 (392)
                       .++++|+|||++++|+||+++||||++||++++.+.+.++                                       
T Consensus       177 ~~~A~el~ltg~~i~A~eA~~~GLV~~vv~~~~l~~~a~~~---------------------------------------  217 (291)
T 2fbm_A          177 KASANEMLIAGRKLTAREACAKGLVSQVFLTGTFTQEVMIQ---------------------------------------  217 (291)
T ss_dssp             HHHHHHHHTSCCEEEHHHHHHTTSCSEEECSTTSHHHHHHH---------------------------------------
T ss_pred             HHHHHHHHHcCCccCHHHHHHCCCcceecChhHHHHHHHHH---------------------------------------
Confidence             8999999999999999999999999999999987644443                                       


Q ss_pred             hCcCCHHHHHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHcCCccHHHH
Q 016290          243 FSKETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYE  322 (392)
Q Consensus       243 f~~~~~eei~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~e  322 (392)
                                                  +++|++.||.+++.+|++++.....++++++..|...+..++.+   +|++|
T Consensus       218 ----------------------------a~~la~~~p~a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s---~d~~e  266 (291)
T 2fbm_A          218 ----------------------------IKELASYNPIVLEECKALVRCNIKLELEQANERECEVLRKIWSS---AQGIE  266 (291)
T ss_dssp             ----------------------------HHHHTTSCHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHTS---HHHHH
T ss_pred             ----------------------------HHHHHhCCHHHHHHHHHHHHhhhccCHHHHHHHHHHHHHHHhcC---HHHHH
Confidence                                        78999999999999999999988888999999999999999999   99999


Q ss_pred             HHHHH-HhccCCCCCCCCC
Q 016290          323 GIRAL-TIEKDNAPKWDPP  340 (392)
Q Consensus       323 Gv~a~-l~dK~r~P~w~~~  340 (392)
                      |++|| + +| |+|+|+++
T Consensus       267 g~~Af~~-ek-R~P~f~~~  283 (291)
T 2fbm_A          267 SMLKIPL-LG-YKAAFPPR  283 (291)
T ss_dssp             HHHTC--------------
T ss_pred             HHHHHHh-cC-CCCCCCCC
Confidence            99999 8 66 99999875

>3qk8_A Enoyl-COA hydratase ECHA15; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 1.60A {Mycobacterium marinum M} SCOP: c.14.1.0 PDB: 3q1t_A

Probab=100.00  E-value=2.8e-57  Score=431.90  Aligned_cols=257  Identities=20%  Similarity=0.287  Sum_probs=223.9

Q ss_pred             CCCCcEEEEEeC-CEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchh
Q 016290            9 PDEQVVLGEEIG-NVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDS   87 (392)
Q Consensus         9 ~~~~~V~~~~~~-~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~   87 (392)
                      +.++.|.+++++ +|++||||||+ +|+||.+|+.+|.++|+.++.|+++|+|||||.|++||+|+|++++.........
T Consensus        10 ~~~~~v~~~~~~~~v~~itlnrp~-~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~   88 (272)
T 3qk8_A           10 QDFPSLRFEPGEHGVLNLVLDSPG-LNSVGPQMHRDLADVWPVIDRDPDVRVVLVRGEGKAFSSGGSFELIDETIGDYEG   88 (272)
T ss_dssp             GGCTTEEEEECSTTEEEEEECCHH-HHEECHHHHHHHHHHHHHHHHCTTCSEEEEEESSSCSBCEECHHHHHHHHHCHHH
T ss_pred             CCCCeEEEEEeCCCEEEEEECCCC-cCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCeeCCcCHHHHhccccchHH
Confidence            446789999986 89999999999 9999999999999999999999999999999999999999999998642211222


Q ss_pred             HHHHHHHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcch-HHH
Q 016290           88 CLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HLG  166 (392)
Q Consensus        88 ~~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G-~~a  166 (392)
                      ...++...++++..|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++| .++
T Consensus        89 ~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A  168 (272)
T 3qk8_A           89 RIRIMREARDLVLNLVNLDKPVVSAIRGPAVGAGLVVALLADISVASATAKIIDGHTKLGVAAGDHAAICWPLLVGMAKA  168 (272)
T ss_dssp             HHHHHHHHHHHHHHHHTCCSCEEEEECSEEEHHHHHHHHHSSEEEEETTCEEECCHHHHTSCSCSSHHHHTHHHHCHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEECchhccCCCCCccHHHHHHHHhCHHHH
Confidence            2456667788999999999999999999999999999999999999999999999999999999999999999999 999


Q ss_pred             HHHhhcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHhCcC
Q 016290          167 EFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKE  246 (392)
Q Consensus       167 ~~L~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~~  246 (392)
                      ++|++||++++|+||+++||||++||++++.+.+.++                                           
T Consensus       169 ~~l~ltg~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~-------------------------------------------  205 (272)
T 3qk8_A          169 KYYLLTCETLSGEEAERIGLVSTCVDDDEVLPTATRL-------------------------------------------  205 (272)
T ss_dssp             HHHHHHCCCEEHHHHHHHTSSSEEECGGGHHHHHHHH-------------------------------------------
T ss_pred             HHHHHcCCCCCHHHHHHCCCCcEeeCHhHHHHHHHHH-------------------------------------------
Confidence            9999999999999999999999999998887644443                                           


Q ss_pred             CHHHHHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhh---cCHHHHHHHHHHHHHHHHHcCCccHHHHH
Q 016290          247 TVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGRE---QSLAECLKKEFRLTINILRAIISADIYEG  323 (392)
Q Consensus       247 ~~eei~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~---~~l~~~l~~E~~~~~~~~~~~~~~d~~eG  323 (392)
                                              +++|++.||.+++.+|++++....   .++++.+..|    ..++.+   +|++||
T Consensus       206 ------------------------a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~e----~~~~~s---~d~~eg  254 (272)
T 3qk8_A          206 ------------------------AENLAQGAQNAIRWTKRSLNHWYRMFGPTFETSLGLE----FLGFTG---PDVQEG  254 (272)
T ss_dssp             ------------------------HHHHHTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHH----HHHTTS---SHHHHH
T ss_pred             ------------------------HHHHHcCCHHHHHHHHHHHHHHHhhcchhHHHHHHHH----HHHhCC---HHHHHH
Confidence                                    789999999999999999997654   3455555554    466777   999999


Q ss_pred             HHHHHhccCCCCCCCCCCC
Q 016290          324 IRALTIEKDNAPKWDPPTL  342 (392)
Q Consensus       324 v~a~l~dK~r~P~w~~~~l  342 (392)
                      ++||+ +| |+|+|++++.
T Consensus       255 ~~Af~-ek-R~p~f~g~~~  271 (272)
T 3qk8_A          255 LAAHR-QK-RPARFTDRTE  271 (272)
T ss_dssp             HHHHH-TT-SCCCC-----
T ss_pred             HHHHH-cC-CCCCCCCCCC
Confidence            99999 66 9999998653

>1wz8_A Enoyl-COA hydratase; lyase, crotonase, hexamer, structural genomics, riken S genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.14.1.3

Probab=100.00  E-value=9.9e-57  Score=426.47  Aligned_cols=253  Identities=21%  Similarity=0.265  Sum_probs=229.9

Q ss_pred             CCcEEEEE-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccC-CCCchhH
Q 016290           11 EQVVLGEE-IGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDG-RNSKDSC   88 (392)
Q Consensus        11 ~~~V~~~~-~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~-~~~~~~~   88 (392)
                      +..|.+++ +++|++||||||+ +|+||.+|+.+|.++|+.++.|+++++|||||.|++||+|+|++ +... .......
T Consensus         9 ~~~v~~~~~~~~v~~itlnrp~-~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~-~~~~~~~~~~~~   86 (264)
T 1wz8_A            9 YPGLAFAWPRPGVLEITFRGEK-LNAMPPALHRGLARVWRDLEAVEGVRAVLLRGEGGVFSAGGSFG-LIEEMRASHEAL   86 (264)
T ss_dssp             CTTEEEEEEETTEEEEEECCSG-GGCBCHHHHHHHHHHHHHHTTCTTCSEEEEEEGGGCCBCCBCHH-HHHHHHHCHHHH
T ss_pred             CCeEEEEEccCCEEEEEeCCCC-cCCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCCcccCccc-cccccccchHHH
Confidence            45699999 9999999999999 99999999999999999999999999999999999999999999 6532 1011112


Q ss_pred             HHHHHHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcch-HHHH
Q 016290           89 LEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HLGE  167 (392)
Q Consensus        89 ~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G-~~a~  167 (392)
                      ..++...++++..|.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++| .+++
T Consensus        87 ~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~  166 (264)
T 1wz8_A           87 LRVFWEARDLVLGPLNFPRPVVAAVEKVAVGAGLALALAADIAVVGKGTRLLDGHLRLGVAAGDHAVLLWPLLVGMAKAK  166 (264)
T ss_dssp             HHHHHHHHHHHHHHHHSSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTSCCTTTHHHHTHHHHCHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCCCEEEEECCeeechhHHHHHhCCEEEecCCCEEeCchhhcCcCCCccHHHHHHHHhCHHHHH
Confidence            345566778889999999999999999999999999999999999999999999999999999999999999999 9999


Q ss_pred             HHhhcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHhCcCC
Q 016290          168 FLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKET  247 (392)
Q Consensus       168 ~L~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~~~  247 (392)
                      +|++||++++|+||+++||||++||++++.+.+.++                                            
T Consensus       167 ~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~--------------------------------------------  202 (264)
T 1wz8_A          167 YHLLLNEPLTGEEAERLGLVALAVEDEKVYEKALEV--------------------------------------------  202 (264)
T ss_dssp             HHHHHTCCEEHHHHHHHTSSSEEECGGGHHHHHHHH--------------------------------------------
T ss_pred             HHHHcCCCCCHHHHHHCCCceeecChhHHHHHHHHH--------------------------------------------
Confidence            999999999999999999999999998877644443                                            


Q ss_pred             HHHHHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHcCCccHHHHHHHHH
Q 016290          248 VAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGIRAL  327 (392)
Q Consensus       248 ~eei~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eGv~a~  327 (392)
                                             +++|++.||.+++.+|++++.+... +++++..|...+..++.+   +|++||+++|
T Consensus       203 -----------------------a~~la~~~~~a~~~~K~~l~~~~~~-~~~~l~~e~~~~~~~~~s---~d~~eg~~af  255 (264)
T 1wz8_A          203 -----------------------AERLAQGPKEALHHTKHALNHWYRS-FLPHFELSLALEFLGFSG---KELEEGLKAL  255 (264)
T ss_dssp             -----------------------HHHHHTSCHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHGGGS---HHHHHHHHHH
T ss_pred             -----------------------HHHHHhCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcC---hHHHHHHHHH
Confidence                                   7889999999999999999998888 999999999999999999   9999999999


Q ss_pred             HhccCCCCCCC
Q 016290          328 TIEKDNAPKWD  338 (392)
Q Consensus       328 l~dK~r~P~w~  338 (392)
                      + +| |+|+|+
T Consensus       256 ~-ek-r~p~f~  264 (264)
T 1wz8_A          256 K-EK-RPPEFP  264 (264)
T ss_dssp             H-TT-SCCCCC
T ss_pred             H-cc-CCCCCC
Confidence            9 66 899995

>3r9q_A Enoyl-COA hydratase/isomerase; ssgcid, lyase,isomerase; 2.10A {Mycobacterium abscessus} PDB: 3qka_A

Probab=100.00  E-value=1.9e-57  Score=430.74  Aligned_cols=252  Identities=21%  Similarity=0.223  Sum_probs=206.5

Q ss_pred             CCCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhHH
Q 016290           10 DEQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCL   89 (392)
Q Consensus        10 ~~~~V~~~~~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~   89 (392)
                      .+..|+++.+++|++||||||+++|+||.+|+.+|.++|+.++.|++||+|||||.|++||+|+|++++......... .
T Consensus         9 ~m~~v~~~~~~~va~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~-~   87 (262)
T 3r9q_A            9 MQPAVRVEKAGPVTTVILNRPHARNAVDGPTAAALLAAFTEFDADPEASVAVLWGDNGTFCAGADLKAMGTDRGNELH-P   87 (262)
T ss_dssp             -CCSEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSBCCBCTTTTTSTTSCCCC-T
T ss_pred             cCCEEEEEEECCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCccCCcCHHHHhccChhhHH-H
Confidence            345699999999999999999999999999999999999999999999999999999999999999998653221110 0


Q ss_pred             HHHHHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcch-HHHHH
Q 016290           90 EVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HLGEF  168 (392)
Q Consensus        90 ~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G-~~a~~  168 (392)
                      .   ....+...+.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++| .++++
T Consensus        88 ~---~~~~~~~~~~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A~~  164 (262)
T 3r9q_A           88 H---GPGPMGPSRLRLSKPVIAAISGHAVAGGIELALWCDLRVVEEDAVLGVFCRRWGVPLIDGGTIRLPRLIGHSRAMD  164 (262)
T ss_dssp             T---SSCTTSSTTCCCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECTHHHHTCCCCSSHHHHHHHHHCHHHHHH
T ss_pred             h---hhhHHHHHHHhCCCCEEEEECCeeehhhhHHHHhCCEEEEeCCCEEecchhccCCCCCccHHHHHHHHhCHHHHHH
Confidence            0   0112333456999999999999999999999999999999999999999999999999999999999999 99999


Q ss_pred             HhhcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHhCcCCH
Q 016290          169 LALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKETV  248 (392)
Q Consensus       169 L~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~  248 (392)
                      |++||++++|+||+++||||++||++++.+.+.++                                             
T Consensus       165 l~ltG~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~---------------------------------------------  199 (262)
T 3r9q_A          165 LILTGRPVHANEALDIGLVNRVVARGQAREAAETL---------------------------------------------  199 (262)
T ss_dssp             HHHHCCCEEHHHHHHTTSCSEEECTTCHHHHHHHH---------------------------------------------
T ss_pred             HHHcCCcCCHHHHHHcCCccEecChhHHHHHHHHH---------------------------------------------
Confidence            99999999999999999999999999987654444                                             


Q ss_pred             HHHHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHH
Q 016290          249 AEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGIRALT  328 (392)
Q Consensus       249 eei~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eGv~a~l  328 (392)
                                            +++|++.||.+++.+|+++++....+++++++.|.+ +..++.    .|++||++||+
T Consensus       200 ----------------------a~~la~~~~~a~~~~K~~~~~~~~~~l~~~l~~e~~-~~~~~~----sd~~Eg~~AF~  252 (262)
T 3r9q_A          200 ----------------------AAEIAAFPQQCVRADRDSAIAQWGMAEEAALDNEFG-SIERVA----TEALEGAGRFA  252 (262)
T ss_dssp             ----------------------HHHHHHSCHHHHHHHHHHHHHTTTSCHHHHHHHHHT-HHHHHH----C----------
T ss_pred             ----------------------HHHHHhCCHHHHHHHHHHHHhhhcCCHHHHHHHHHH-HHHHhc----cHHHHHHHHHH
Confidence                                  789999999999999999999999999999999999 666654    39999999999


Q ss_pred             hccCCCCCCCC
Q 016290          329 IEKDNAPKWDP  339 (392)
Q Consensus       329 ~dK~r~P~w~~  339 (392)
                       +| |+|.|+.
T Consensus       253 -ek-r~p~~~~  261 (262)
T 3r9q_A          253 -AG-EGRHGAG  261 (262)
T ss_dssp             -----------
T ss_pred             -cC-CCCCCCC
Confidence             66 9999974

>1uiy_A Enoyl-COA hydratase; lyase, beta-oxidation, crotonase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.85A {Thermus thermophilus} SCOP: c.14.1.3

Probab=100.00  E-value=2.4e-56  Score=421.41  Aligned_cols=250  Identities=30%  Similarity=0.406  Sum_probs=226.3

Q ss_pred             EEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCC-CchhHHHHH
Q 016290           14 VLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRN-SKDSCLEVV   92 (392)
Q Consensus        14 V~~~~~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~-~~~~~~~~~   92 (392)
                      |.++ +++|++||||||+++|+||.+|+.+|.++|+.++.|+++++|||||.|++||+|+|++++..... .........
T Consensus         2 i~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~   80 (253)
T 1uiy_A            2 VQVE-KGHVAVVFLNDPERRNPLSPEMALSLLQALDDLEADPGVRAVVLTGRGKAFSAGADLAFLERVTELGAEENYRHS   80 (253)
T ss_dssp             EEEE-CSSEEEEEECCGGGTCCCCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSCSBCCCCHHHHHHHTTSCHHHHHHHH
T ss_pred             EEEE-eCCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCcccCcChHHHHhcccCCchhHHHHH
Confidence            6788 99999999999999999999999999999999999999999999999999999999998864210 111111111


Q ss_pred             HHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcch-HHHHHHhh
Q 016290           93 YRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HLGEFLAL  171 (392)
Q Consensus        93 ~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G-~~a~~L~l  171 (392)
                      ...++++..|.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++| +++|+|++| .++++|++
T Consensus        81 ~~~~~~~~~i~~~~kPvIAav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g-~~~l~r~vG~~~a~~l~l  159 (253)
T 1uiy_A           81 LSLMRLFHRVYTYPKPTVAAVNGPAVAGGAGLALACDLVVMDEEARLGYTEVKIGFVAALV-SVILVRAVGEKAAKDLLL  159 (253)
T ss_dssp             HHHHHHHHHHHHCSSCEEEEECSCEETHHHHHHHTSSEEEEETTCEEECCHHHHTCCCHHH-HHHHHHHSCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCEEEEECCeeeHHHHHHHHhCCEEEEcCCcEEeCcccccCcCCchH-HHHHHHHhCHHHHHHHHH
Confidence            2256788899999999999999999999999999999999999999999999999999999 999999999 99999999


Q ss_pred             cCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHhCcCCHHHH
Q 016290          172 TGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKETVAEI  251 (392)
Q Consensus       172 tG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~eei  251 (392)
                      ||++++|+||+++||||++||++++.+.+.++                                                
T Consensus       160 tg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~------------------------------------------------  191 (253)
T 1uiy_A          160 TGRLVEAREAKALGLVNRIAPPGKALEEAKAL------------------------------------------------  191 (253)
T ss_dssp             HCCEEEHHHHHHHTSCSEEECTTCHHHHHHHH------------------------------------------------
T ss_pred             hCCccCHHHHHHCCCcceecChhHHHHHHHHH------------------------------------------------
Confidence            99999999999999999999999887654444                                                


Q ss_pred             HHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHhcc
Q 016290          252 IKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGIRALTIEK  331 (392)
Q Consensus       252 ~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eGv~a~l~dK  331 (392)
                                         +++|++.||.+++.+|++++.+...++++++..|.+.+..++.+   +|++||+++|+ +|
T Consensus       192 -------------------a~~la~~~~~a~~~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~s---~d~~eg~~af~-~k  248 (253)
T 1uiy_A          192 -------------------AEEVAKNAPTSLRLTKELLLALPGMGLEDGFRLAALANAWVRET---GDLAEGIRAFF-EK  248 (253)
T ss_dssp             -------------------HHHHHHSCHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHGGGC---HHHHHHHHHHH-TT
T ss_pred             -------------------HHHHHcCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcC---HHHHHHHHHHh-Cc
Confidence                               78899999999999999999999899999999999999999999   99999999999 66


Q ss_pred             CCCCCC
Q 016290          332 DNAPKW  337 (392)
Q Consensus       332 ~r~P~w  337 (392)
                       |+|+|
T Consensus       249 -r~p~~  253 (253)
T 1uiy_A          249 -RPPRF  253 (253)
T ss_dssp             -SCCCC
T ss_pred             -CCCCC
Confidence             89998

>1ef8_A Methylmalonyl COA decarboxylase; lyase; 1.85A {Escherichia coli} SCOP: c.14.1.3 PDB: 1ef9_A*

Probab=100.00  E-value=3.5e-57  Score=428.96  Aligned_cols=254  Identities=20%  Similarity=0.309  Sum_probs=228.0

Q ss_pred             CCCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEc-CC-CccccCCCchhhccCCCCchh
Q 016290           10 DEQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKG-VG-RAFSAGGDLKMFYDGRNSKDS   87 (392)
Q Consensus        10 ~~~~V~~~~~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g-~G-~~FcaG~Dl~~l~~~~~~~~~   87 (392)
                      +++.|.++.+++|++||||||+++|+||.+|+.+|.++|+.++.|+ +++||||| .| ++||+|+|++++.......  
T Consensus         2 ~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~-vr~vVltg~~g~~~F~aG~Dl~~~~~~~~~~--   78 (261)
T 1ef8_A            2 SYQYVNVVTINKVAVIEFNYGRKLNALSKVFIDDLMQALSDLNRPE-IRCIILRAPSGSKVFSAGHDIHELPSGGRDP--   78 (261)
T ss_dssp             CCSSEEEEEETTEEEEEECCGGGTTCCCHHHHHHHHHHHHHTCSTT-CCEEEEECCTTCSEEECCSCSTTC-----CT--
T ss_pred             CcceEEEEEeCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhhCC-ceEEEEECCCCCCeeecCcChHhhhccCchh--
Confidence            3567999999999999999999999999999999999999999999 99999999 99 9999999999876421111  


Q ss_pred             HHHHHHHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcch-HHH
Q 016290           88 CLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HLG  166 (392)
Q Consensus        88 ~~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G-~~a  166 (392)
                       ..++...++++..|.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++| .++
T Consensus        79 -~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a  157 (261)
T 1ef8_A           79 -LSYDDPLRQITRMIQKFPKPIISMVEGSVWGGAFEMIMSSDLIIAASTSTFSMTPVNLGVPYNLVGIHNLTRDAGFHIV  157 (261)
T ss_dssp             -TCTTSHHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTCCCCHHHHHTTSSSSCHHHH
T ss_pred             -HHHHHHHHHHHHHHHhCCCCEEEEECCEEEeHhHHHHHhCCEEEecCCCEEeCchhccCCCCCccHHHHHHHHhCHHHH
Confidence             112223467788899999999999999999999999999999999999999999999999999999999999999 999


Q ss_pred             HHHhhcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHhCcC
Q 016290          167 EFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKE  246 (392)
Q Consensus       167 ~~L~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~~  246 (392)
                      ++|++||++++|+||+++||||++||++++.+.+.+                                            
T Consensus       158 ~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~--------------------------------------------  193 (261)
T 1ef8_A          158 KELIFTASPITAQRALAVGILNHVVEVEELEDFTLQ--------------------------------------------  193 (261)
T ss_dssp             HHHHHHCCCEEHHHHHHTTSCSEEECHHHHHHHHHH--------------------------------------------
T ss_pred             HHHHHcCCccCHHHHHHCCCcccccCHHHHHHHHHH--------------------------------------------
Confidence            999999999999999999999999998776654333                                            


Q ss_pred             CHHHHHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHHH--HHHHcCCccHHHHHH
Q 016290          247 TVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTI--NILRAIISADIYEGI  324 (392)
Q Consensus       247 ~~eei~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~--~~~~~~~~~d~~eGv  324 (392)
                                             ++++|++.||.+++.+|++++.....++++++..|...+.  .++.+   +|++||+
T Consensus       194 -----------------------~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~s---~d~~eg~  247 (261)
T 1ef8_A          194 -----------------------MAHHISEKAPLAIAVIKEELRVLGEAHTMNSDEFERIQGMRRAVYDS---EDYQEGM  247 (261)
T ss_dssp             -----------------------HHHHHTTSCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHTS---HHHHHHH
T ss_pred             -----------------------HHHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHhhHHHhhcC---HHHHHHH
Confidence                                   3789999999999999999999888899999999999998  89999   9999999


Q ss_pred             HHHHhccCCCCCCCC
Q 016290          325 RALTIEKDNAPKWDP  339 (392)
Q Consensus       325 ~a~l~dK~r~P~w~~  339 (392)
                      ++|+ +| |+|+|++
T Consensus       248 ~af~-ek-r~p~~~~  260 (261)
T 1ef8_A          248 NAFL-EK-RKPNFVG  260 (261)
T ss_dssp             HHHH-TT-SCCCCCC
T ss_pred             HHHH-cc-CCCCCCC
Confidence            9999 66 8999986

>3hp0_A Putative polyketide biosynthesis enoyl-COA hydratase homolog PKSH; polyketide synthase, enoyl COA hydratase,isomerase; 2.32A {Bacillus subtilis}

Probab=100.00  E-value=1e-56  Score=426.61  Aligned_cols=256  Identities=16%  Similarity=0.232  Sum_probs=219.5

Q ss_pred             CCCCCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchh
Q 016290            8 NPDEQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDS   87 (392)
Q Consensus         8 ~~~~~~V~~~~~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~   87 (392)
                      .++++.|+++++++|++||||||+++|+||.+|+.+|.++++.++.| +||+|||||.|++||+|+|++++.........
T Consensus         3 ~m~~~~i~~~~~~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d-~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~   81 (267)
T 3hp0_A            3 LVTYQTIKVRFQASVCYITFHRPEANNTINDTLIEECLQVLNQCETS-TVTVVVLEGLPEVFCFGADFQEIYQEMKRGRK   81 (267)
T ss_dssp             --CCSSEEEEEETTEEEEEECCGGGTTCBCSHHHHHHHHHHHHHHHS-SCCEEEEECCSSCSBCCBCHHHHHHTTTTTCC
T ss_pred             CCCCceEEEEEECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHhcC-CCEEEEEECCCCceecCcCHHHHHhcccChHH
Confidence            34567899999999999999999999999999999999999999986 59999999999999999999998653211111


Q ss_pred             HHHHHHHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcch-HHH
Q 016290           88 CLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HLG  166 (392)
Q Consensus        88 ~~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G-~~a  166 (392)
                      ...++...+.++..|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++| +++|+|++| .++
T Consensus        82 ~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g-~~~l~r~vG~~~A  160 (267)
T 3hp0_A           82 QASSQEPLYDLWMKLQTGPYVTISHVRGKVNAGGLGFVSATDIAIADQTASFSLSELLFGLYPACV-LPFLIRRIGRQKA  160 (267)
T ss_dssp             SCCCCHHHHHHHHHHHHSSSEEEEEECSEEETTHHHHHHHSSEEEECTTCEEECCGGGGTCCCTTT-HHHHHHHHCHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCCCEEEEECCEEeehHHHHHHhCCEEEEcCCCEEECchhccCcCchhH-HHHHHHHhCHHHH
Confidence            122334456788899999999999999999999999999999999999999999999999999985 678999999 999


Q ss_pred             HHHhhcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHhCcC
Q 016290          167 EFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKE  246 (392)
Q Consensus       167 ~~L~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~~  246 (392)
                      ++|++||++++|+||+++||||++||+.+.  ...                                             
T Consensus       161 ~ellltg~~i~A~eA~~~GLV~~vv~~~~~--~~~---------------------------------------------  193 (267)
T 3hp0_A          161 HYMTLMTKPISVQEASEWGLIDAFDAESDV--LLR---------------------------------------------  193 (267)
T ss_dssp             HHHHHHCCCBCHHHHHHHTSSSCBCSCTTH--HHH---------------------------------------------
T ss_pred             HHHHHcCCCCCHHHHHHCCCcceecCCHHH--HHH---------------------------------------------
Confidence            999999999999999999999999986442  222                                             


Q ss_pred             CHHHHHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHcCCccHHHHHHHH
Q 016290          247 TVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGIRA  326 (392)
Q Consensus       247 ~~eei~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eGv~a  326 (392)
                                            +++++|++.||.+++.+|++++.... .+.+.+..|.+.+..++.+   +|++||++|
T Consensus       194 ----------------------~~a~~la~~~p~a~~~~K~~l~~~~~-~~~~~~~~e~~~~~~~~~s---~d~~Eg~~A  247 (267)
T 3hp0_A          194 ----------------------KHLLRLRRLNKKGIAHYKQFMSSLDH-QVSRAKATALTANQDMFSD---PQNQMGIIR  247 (267)
T ss_dssp             ----------------------HHHHHHTTSCHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTS---TTHHHHHHH
T ss_pred             ----------------------HHHHHHHhCCHHHHHHHHHHHHhccc-chHHHHHHHHHHHHHHhCC---HHHHHHHHH
Confidence                                  33789999999999999999998654 5788888999999999999   999999999


Q ss_pred             HHhccCCCCCCCCC
Q 016290          327 LTIEKDNAPKWDPP  340 (392)
Q Consensus       327 ~l~dK~r~P~w~~~  340 (392)
                      |+ +| |+|+|++.
T Consensus       248 F~-ek-r~P~~~~~  259 (267)
T 3hp0_A          248 YV-ET-GQFPWEDQ  259 (267)
T ss_dssp             HT-TS-CCC-----
T ss_pred             HH-hc-CCCCCCCC
Confidence            99 66 99999864

>3oc7_A Enoyl-COA hydratase; seattle structural genomics center for infectious disease, S non-pathogenic mycobacterium species, ortholog; 1.50A {Mycobacterium avium} SCOP: c.14.1.0

Probab=100.00  E-value=4.2e-56  Score=422.86  Aligned_cols=252  Identities=22%  Similarity=0.284  Sum_probs=224.6

Q ss_pred             CcEEEE----EeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchh
Q 016290           12 QVVLGE----EIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDS   87 (392)
Q Consensus        12 ~~V~~~----~~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~   87 (392)
                      +.|.++    .+++|++||||||+++|+||.+|+.+|.++++.++.|++|++|||||.|++||+|+|++++.........
T Consensus         7 ~~v~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~   86 (267)
T 3oc7_A            7 ALVDYAGPAATGGPVARLTLNSPHNRNALSTALVSQLHQGLRDASSDPAVRVVVLAHTGGTFCAGADLSEAGSGGSPSSA   86 (267)
T ss_dssp             SSEEEECHHHHSSSEEEEEECCGGGTSCBCHHHHHHHHHHHHHHHHCTTCCEEEEEECSSEEECCBC-----------CH
T ss_pred             cccCCCCccceeCCEEEEEecCCCccCCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCceeCCcCchhhhhccCchhh
Confidence            678999    8999999999999999999999999999999999999999999999999999999999998621111111


Q ss_pred             ---HHHHHHHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcch-
Q 016290           88 ---CLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-  163 (392)
Q Consensus        88 ---~~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G-  163 (392)
                         ...++...++++..|.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+ ++| 
T Consensus        87 ~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~-~vG~  165 (267)
T 3oc7_A           87 YDMAVERAREMAALMRAIVESRLPVIAAIDGHVRAGGFGLVGACDIAVAGPRSSFALTEARIGVAPAIISLTLLP-KLSA  165 (267)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCSSCEEEEECSEEETTHHHHHHHSSEEEECTTCEEECCGGGGTCCCTTTHHHHTT-TSCH
T ss_pred             hhhHHHHHHHHHHHHHHHHhCCCCEEEEEcCeecccchHHHHHCCEEEEcCCCEEeCcccccCCCcchhHHHHHH-HhCH
Confidence               134667778899999999999999999999999999999999999999999999999999999999999999 788 


Q ss_pred             HHHHHHhhcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHh
Q 016290          164 HLGEFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECF  243 (392)
Q Consensus       164 ~~a~~L~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f  243 (392)
                      .++++|++||++++|+||+++||||++  .+++.+.+.+                                         
T Consensus       166 ~~A~~l~ltg~~~~a~eA~~~GLv~~v--~~~l~~~a~~-----------------------------------------  202 (267)
T 3oc7_A          166 RAAARYYLTGEKFDARRAEEIGLITMA--AEDLDAAIDQ-----------------------------------------  202 (267)
T ss_dssp             HHHHHHHHHCCCBCHHHHHHHTSSSEE--CSSHHHHHHH-----------------------------------------
T ss_pred             HHHHHHHHcCCccCHHHHHHCCChhhh--hHHHHHHHHH-----------------------------------------
Confidence            999999999999999999999999999  6777654443                                         


Q ss_pred             CcCCHHHHHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHcCCccHHHHH
Q 016290          244 SKETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEG  323 (392)
Q Consensus       244 ~~~~~eei~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eG  323 (392)
                                                ++++|++.||.+++.+|+++++....+++++++.|...+..++.+   +|++||
T Consensus       203 --------------------------~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s---~d~~eg  253 (267)
T 3oc7_A          203 --------------------------LVTDVGRGSPQGLAASKALTTAAVLERFDRDAERLAEESARLFVS---DEAREG  253 (267)
T ss_dssp             --------------------------HHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS---HHHHHH
T ss_pred             --------------------------HHHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcC---HHHHHH
Confidence                                      378999999999999999999998889999999999999999999   999999


Q ss_pred             HHHHHhccCCCCCCC
Q 016290          324 IRALTIEKDNAPKWD  338 (392)
Q Consensus       324 v~a~l~dK~r~P~w~  338 (392)
                      ++||+ +| |+|+|+
T Consensus       254 ~~af~-ek-r~p~f~  266 (267)
T 3oc7_A          254 MLAFL-EK-RSPNWT  266 (267)
T ss_dssp             HHHHH-HT-CCCTTC
T ss_pred             HHHHH-cC-CCCCCC
Confidence            99999 66 899997

>3rrv_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.45A {Mycobacterium avium subsp}

Probab=100.00  E-value=2.4e-56  Score=426.12  Aligned_cols=257  Identities=22%  Similarity=0.274  Sum_probs=228.1

Q ss_pred             CCCCCCCCC--CCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhc
Q 016290            2 AQGVVKNPD--EQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFY   79 (392)
Q Consensus         2 ~~~~~~~~~--~~~V~~~~~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~   79 (392)
                      .+|+..+..  .+.|.++.+++|++||||||+++|+||.+|+.+|.++|+.++.|+++++|||||.|++||+|+|++++.
T Consensus        16 ~~g~~~~~~~~~~~v~~~~~~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~   95 (276)
T 3rrv_A           16 TQGPGSMVYDMPTEIDVRADGALRIITLNRPDSLNSVNDDLHVGLARLWQRLTDDPTARAAVITGAGRAFSAGGDFGYLK   95 (276)
T ss_dssp             --------CCCCTTEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSBCCBCHHHHH
T ss_pred             cCCCccccCCCCCeEEEEEECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCcccCCcCHHHHh
Confidence            345543322  257999999999999999999999999999999999999999999999999999999999999999986


Q ss_pred             cCCCCchhHHHHHHHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHh
Q 016290           80 DGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHS  159 (392)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~  159 (392)
                      ...........++...+.++..|.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~  175 (276)
T 3rrv_A           96 ELSADADLRAKTIRDGREIVLGMARCRIPVVAAVNGPAVGLGCSLVALSDIVYIAENAYLADPHVQVGLVAADGGPLTWP  175 (276)
T ss_dssp             HHHHCHHHHHHHHHHHHHHHHHHHHCSSCEEEEECSCEETHHHHHHHTSSEEEEETTCEEECCHHHHTCCCCSSHHHHGG
T ss_pred             hcccchHHHHHHHHHHHHHHHHHHhCCCCEEEEECceeeHHHHHHHHHCCEEEEeCCCEEECchhccCcCCCccHHHHHH
Confidence            52211222345666778899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcch-HHHHHHhhcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHH
Q 016290          160 RLPG-HLGEFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSI  238 (392)
Q Consensus       160 rl~G-~~a~~L~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  238 (392)
                      |++| ..+++|++||++++|+||+++||||++|  +++.+.+.+                                    
T Consensus       176 r~vG~~~A~ellltG~~i~A~eA~~~GLv~~vv--~~l~~~a~~------------------------------------  217 (276)
T 3rrv_A          176 LHISLLLAKEYALTGTRISAQRAVELGLANHVA--DDPVAEAIA------------------------------------  217 (276)
T ss_dssp             GTSCHHHHHHHHHHCCCEEHHHHHHHTSCSEEE--SSHHHHHHH------------------------------------
T ss_pred             HHhCHHHHHHHHHcCCCCCHHHHHHcCCHHHHH--HHHHHHHHH------------------------------------
Confidence            9999 9999999999999999999999999999  777654443                                    


Q ss_pred             HHHHhCcCCHHHHHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHcCCcc
Q 016290          239 IDECFSKETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISA  318 (392)
Q Consensus       239 i~~~f~~~~~eei~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~  318 (392)
                                                     ++++|++.||.+++.+|+++++....+++++++.|...+..++.+   +
T Consensus       218 -------------------------------~A~~la~~~~~a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s---~  263 (276)
T 3rrv_A          218 -------------------------------CAKKILELPQQAVESTKRVLNIHLERAVLASLDYALSAESQSFVT---E  263 (276)
T ss_dssp             -------------------------------HHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS---H
T ss_pred             -------------------------------HHHHHHcCCHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHhCC---H
Confidence                                           378999999999999999999988888999999999999999999   9


Q ss_pred             HHHHHHHHHHhcc
Q 016290          319 DIYEGIRALTIEK  331 (392)
Q Consensus       319 d~~eGv~a~l~dK  331 (392)
                      |++||++||+ +|
T Consensus       264 d~~eg~~AF~-ek  275 (276)
T 3rrv_A          264 DFRSIVTKLA-DK  275 (276)
T ss_dssp             HHHHHHHHHH-CC
T ss_pred             HHHHHHHHHH-cC
Confidence            9999999999 66

>1hzd_A AUH, AU-binding protein/enoyl-COA hydratase; RNA-binding protein,enoyl-COA hydratase, riken structural genomics/proteomics initiative, RSGI; 2.20A {Homo sapiens} SCOP: c.14.1.3 PDB: 2zqq_A 2zqr_A

Probab=100.00  E-value=1.4e-56  Score=427.15  Aligned_cols=263  Identities=19%  Similarity=0.274  Sum_probs=232.9

Q ss_pred             CCCCCCcEEEEE----eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCC-CccccCCCchhhccC
Q 016290            7 KNPDEQVVLGEE----IGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVG-RAFSAGGDLKMFYDG   81 (392)
Q Consensus         7 ~~~~~~~V~~~~----~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G-~~FcaG~Dl~~l~~~   81 (392)
                      +|.+...|+++.    +++|++||||||+++|+||.+|+.+|.++|+.++.|+++++|||||.| ++||+|+|++++...
T Consensus         3 ~~~~~~~~~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~   82 (272)
T 1hzd_A            3 EMKTEDELRVRHLEEENRGIVVLGINRAYGKNSLSKNLIKMLSKAVDALKSDKKVRTIIIRSEVPGIFCAGADLKERAKM   82 (272)
T ss_dssp             ----CCSEEEEECCGGGTTEEEEEECCGGGTTCBCTTHHHHHHHHHHHHHHCSSCSEEEEEESBTEEEECCBCHHHHTTS
T ss_pred             cccCCCcEEEEecccccCCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEecCCCCCCcCCCChhhhhcc
Confidence            345566777764    689999999999999999999999999999999999999999999999 899999999997642


Q ss_pred             CCCchhHHHHHHHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhc
Q 016290           82 RNSKDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRL  161 (392)
Q Consensus        82 ~~~~~~~~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl  161 (392)
                      .  ......++...++++..|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|+
T Consensus        83 ~--~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~  160 (272)
T 1hzd_A           83 S--SSEVGPFVSKIRAVINDIANLPVPTIAAIDGLALGGGLELALACDIRVAASSAKMGLVETKLAIIPGGGGTQRLPRA  160 (272)
T ss_dssp             C--HHHHHHHHHHHHHHHHHHHTCSSCEEEEESEEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCCSSHHHHHHHH
T ss_pred             C--hHHHHHHHHHHHHHHHHHHhCCCCEEEEeCceEEecHHHHHHhCCEEEEcCCCEEeCchhccCCCCCchHHHHHHHH
Confidence            1  22224555666788899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ch-HHHHHHhhcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHH
Q 016290          162 PG-HLGEFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIID  240 (392)
Q Consensus       162 ~G-~~a~~L~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~  240 (392)
                      +| .++++|++||++++|+||+++||||++||++++.+...                                       
T Consensus       161 vG~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~~~---------------------------------------  201 (272)
T 1hzd_A          161 IGMSLAKELIFSARVLDGKEAKAVGLISHVLEQNQEGDAAY---------------------------------------  201 (272)
T ss_dssp             HCHHHHHHHHHHTCEEEHHHHHHHTSCSEEECCCTTSCHHH---------------------------------------
T ss_pred             hCHHHHHHHHHcCCcCCHHHHHHCCCcceecChhhhhHHHH---------------------------------------
Confidence            99 99999999999999999999999999999988753111                                       


Q ss_pred             HHhCcCCHHHHHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHcCCccHH
Q 016290          241 ECFSKETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADI  320 (392)
Q Consensus       241 ~~f~~~~~eei~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~  320 (392)
                                              ++|.+++++|+..||.+++.+|++++.+...++++++..|...+..++.+   +|+
T Consensus       202 ------------------------~~a~~~a~~la~~~p~a~~~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~s---~d~  254 (272)
T 1hzd_A          202 ------------------------RKALDLAREFLPQGPVAMRVAKLAINQGMEVDLVTGLAIEEACYAQTIPT---KDR  254 (272)
T ss_dssp             ------------------------HHHHHHHHTTTTSCHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHTTTTC---HHH
T ss_pred             ------------------------HHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCC---HHH
Confidence                                    12345578899999999999999999998889999999999999999888   999


Q ss_pred             HHHHHHHHhccCCCCCCCC
Q 016290          321 YEGIRALTIEKDNAPKWDP  339 (392)
Q Consensus       321 ~eGv~a~l~dK~r~P~w~~  339 (392)
                      +||+++|+ +| |+|+|++
T Consensus       255 ~egi~af~-ek-r~p~~~g  271 (272)
T 1hzd_A          255 LEGLLAFK-EK-RPPRYKG  271 (272)
T ss_dssp             HHHHHHHT-TT-SCCCCCC
T ss_pred             HHHHHHHh-cC-CCCCCCC
Confidence            99999999 55 9999986

>1mj3_A Enoyl-COA hydratase, mitochondrial; homohexamer, lyase; HET: HXC; 2.10A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2dub_A* 1dub_A* 1ey3_A* 2hw5_A*

Probab=100.00  E-value=1.1e-56  Score=425.14  Aligned_cols=254  Identities=27%  Similarity=0.372  Sum_probs=228.1

Q ss_pred             CCCcEEEEE---eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCch
Q 016290           10 DEQVVLGEE---IGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKD   86 (392)
Q Consensus        10 ~~~~V~~~~---~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~   86 (392)
                      .++.+.++.   .++|++||||||+++|+||.+|+.+|.++|+.++.|+++++|||+|.|++||+|+|++++....  ..
T Consensus         2 ~~~~~~~~~~v~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~--~~   79 (260)
T 1mj3_A            2 NFQYIITEKKGKNSSVGLIQLNRPKALNALCNGLIEELNQALETFEEDPAVGAIVLTGGEKAFAAGADIKEMQNRT--FQ   79 (260)
T ss_dssp             CCSSEEEEEESGGGCEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEECCSSEEECCBCHHHHTTCC--HH
T ss_pred             CcccceeecccCcCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHHhCCCeeEEEEECCCCCccCCcChHhhhccc--ch
Confidence            355688888   7899999999999999999999999999999999999999999999999999999999875321  11


Q ss_pred             hHHHHHHHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcch-HH
Q 016290           87 SCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HL  165 (392)
Q Consensus        87 ~~~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G-~~  165 (392)
                        ..+.......+..|.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++| .+
T Consensus        80 --~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~  157 (260)
T 1mj3_A           80 --DCYSGKFLSHWDHITRIKKPVIAAVNGYALGGGCELAMMCDIIYAGEKAQFGQPEILLGTIPGAGGTQRLTRAVGKSL  157 (260)
T ss_dssp             --HHHHC--CCGGGGGGGCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCCSSTTTHHHHHHCHHH
T ss_pred             --HHHHHHHHHHHHHHHhCCCCEEEEECCEEEeHHHHHHHhCCEEEEcCCCEEeCcccccCCCCCccHHHHHHHHhCHHH
Confidence              112222223456788999999999999999999999999999999999999999999999999999999999999 99


Q ss_pred             HHHHhhcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHhCc
Q 016290          166 GEFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSK  245 (392)
Q Consensus       166 a~~L~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~  245 (392)
                      +++|++||++++|+||+++||||++||++++.+.+.+                                           
T Consensus       158 a~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~-------------------------------------------  194 (260)
T 1mj3_A          158 AMEMVLTGDRISAQDAKQAGLVSKIFPVETLVEEAIQ-------------------------------------------  194 (260)
T ss_dssp             HHHHHHHCCCEEHHHHHHHTSCSEEECTTTHHHHHHH-------------------------------------------
T ss_pred             HHHHHHcCCcCCHHHHHHcCCccEEeChHHHHHHHHH-------------------------------------------
Confidence            9999999999999999999999999999988754433                                           


Q ss_pred             CCHHHHHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHcCCccHHHHHHH
Q 016290          246 ETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGIR  325 (392)
Q Consensus       246 ~~~eei~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eGv~  325 (392)
                                              ++++|++.||.+++.+|++++.+...++++++..|...+..++.+   +|++||++
T Consensus       195 ------------------------~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~s---~d~~egi~  247 (260)
T 1mj3_A          195 ------------------------CAEKIANNSKIIVAMAKESVNAAFEMTLTEGNKLEKKLFYSTFAT---DDRREGMS  247 (260)
T ss_dssp             ------------------------HHHHHHHSCHHHHHHHHHHHHGGGSSCHHHHHHHHHHHHHHGGGS---HHHHHHHH
T ss_pred             ------------------------HHHHHHcCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcC---HHHHHHHH
Confidence                                    378999999999999999999998889999999999999999999   99999999


Q ss_pred             HHHhccCCCCCCCC
Q 016290          326 ALTIEKDNAPKWDP  339 (392)
Q Consensus       326 a~l~dK~r~P~w~~  339 (392)
                      +|+ +| |+|+|++
T Consensus       248 af~-~k-r~p~~~g  259 (260)
T 1mj3_A          248 AFV-EK-RKANFKD  259 (260)
T ss_dssp             HHH-TT-SCCCCCC
T ss_pred             HHH-cC-CCCCCCC
Confidence            999 66 8999986

>2gtr_A CDY-like, chromodomain Y-like protein; structural genomics, structural genomics consortium, SGC, unknown function; 1.90A {Homo sapiens} PDB: 2fw2_A

Probab=100.00  E-value=1.4e-56  Score=424.83  Aligned_cols=255  Identities=18%  Similarity=0.260  Sum_probs=228.9

Q ss_pred             CCCcEEEEEeCCEEEEEEc-CCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCC-Cc-h
Q 016290           10 DEQVVLGEEIGNVRLVTLN-RPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRN-SK-D   86 (392)
Q Consensus        10 ~~~~V~~~~~~~v~~itLn-rp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~-~~-~   86 (392)
                      .+..|.++++++|++|||| ||+++|+||.+|+.+|.++|+.++.|+ +++|||+|.|++||+|+|++++..... .. .
T Consensus         3 ~~~~i~~~~~~~v~~itln~rp~~~Nal~~~~~~~L~~al~~~~~d~-~r~vvltg~g~~F~aG~Dl~~~~~~~~~~~~~   81 (261)
T 2gtr_A            3 RYRDIVVRKQDGFTHILLSTKSSENNSLNPEVMREVQSALSTAAADD-SKLVLLSAVGSVFCCGLDFIYFIRRLTDDRKR   81 (261)
T ss_dssp             CCSSEEEEEETTEEEEEECCSSSSTTEECHHHHHHHHHHHHHHHHSS-CSCEEEEESSSCSBCEECHHHHHHHHHHCHHH
T ss_pred             ccceEEEEEeCCEEEEEECCCCccCCCCCHHHHHHHHHHHHHHhcCC-CEEEEEecCCCccccccCchhhhhccccchhh
Confidence            3567999999999999999 699999999999999999999999987 499999999999999999998754211 11 1


Q ss_pred             hHHHHHHHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcch-HH
Q 016290           87 SCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HL  165 (392)
Q Consensus        87 ~~~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G-~~  165 (392)
                      ....+....++++..|.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++| .+
T Consensus        82 ~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~  161 (261)
T 2gtr_A           82 ESTKMAEAIRNFVNTFIQFKKPIIVAVNGPAIGLGASILPLCDVVWANEKAWFQTPYTTFGQSPDGCSTVMFPKIMGGAS  161 (261)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCSCEEEEECSCEETHHHHTGGGSSEEEEETTCEEECCTTTTTCCCCTTHHHHHHHHHCHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCEEEEECCeEeeHHHHHHHhCCEEEEcCCCEEeCchhccCCCccchHHHHHHHHcCHHH
Confidence            12344455667888999999999999999999999999999999999999999999999999999999999999999 89


Q ss_pred             HHHHhhcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHhCc
Q 016290          166 GEFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSK  245 (392)
Q Consensus       166 a~~L~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~  245 (392)
                      +++|+|||++++|+||+++||||++||++++.+.+.++                                          
T Consensus       162 a~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~------------------------------------------  199 (261)
T 2gtr_A          162 ANEMLLSGRKLTAQEACGKGLVSQVFWPGTFTQEVMVR------------------------------------------  199 (261)
T ss_dssp             HHHHHHHCCCEEHHHHHHTTSCSEEECGGGHHHHHHHH------------------------------------------
T ss_pred             HHHHHHcCCCCCHHHHHHCCCcccccChhHHHHHHHHH------------------------------------------
Confidence            99999999999999999999999999998877644433                                          


Q ss_pred             CCHHHHHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHcCCccHHHHHHH
Q 016290          246 ETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGIR  325 (392)
Q Consensus       246 ~~~eei~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eGv~  325 (392)
                                               +++|++.||.+++.+|++++.....++++++..|...+..++.+   +|++||++
T Consensus       200 -------------------------a~~la~~~p~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~s---~d~~eg~~  251 (261)
T 2gtr_A          200 -------------------------IKELASCNPVVLEESKALVRCNMKMELEQANERECEVLKKIWGS---AQGMDSML  251 (261)
T ss_dssp             -------------------------HHHHHTSCHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHS---TTTTHHHH
T ss_pred             -------------------------HHHHHhCCHHHHHHHHHHHHhccccCHHHHHHHHHHHHHHHhCC---HHHHHHHH
Confidence                                     78899999999999999999988888999999999999999999   99999999


Q ss_pred             HHHhccCCCCCC
Q 016290          326 ALTIEKDNAPKW  337 (392)
Q Consensus       326 a~l~dK~r~P~w  337 (392)
                      +|+ +| |+|+|
T Consensus       252 af~-ek-r~P~f  261 (261)
T 2gtr_A          252 KYL-QR-KIDEF  261 (261)
T ss_dssp             HHH-HH-HHHC-
T ss_pred             HHH-cc-CCCCC
Confidence            999 67 89998

>2uzf_A Naphthoate synthase; lyase, menaquinone biosynthesis; HET: CAA; 2.9A {Staphylococcus aureus}

Probab=100.00  E-value=3.3e-56  Score=424.81  Aligned_cols=256  Identities=23%  Similarity=0.303  Sum_probs=224.4

Q ss_pred             CCCCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCC-ccccCCCchhhccCCCCc-h
Q 016290            9 PDEQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGR-AFSAGGDLKMFYDGRNSK-D   86 (392)
Q Consensus         9 ~~~~~V~~~~~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~-~FcaG~Dl~~l~~~~~~~-~   86 (392)
                      ..+..|.++.+++|++||||||+++|+||.+|+.+|.++|+.++.|++|++|||||.|+ +||+|+|++++....... .
T Consensus        10 ~~~~~i~~~~~~~va~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~~FcaG~Dl~~~~~~~~~~~~   89 (273)
T 2uzf_A           10 REYDEIKYEFYEGIAKVTINRPEVRNAFTPKTVAEMIDAFSRARDDQNVSVIVLTGEGDLAFCSGGDQKKRGHGGYVGED   89 (273)
T ss_dssp             BCCSSEEEEEETTEEEEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSEEEECCCCCC--------CCS
T ss_pred             CCCceEEEEEECCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhCCCcEEEEEecCCCCceecCcCcHhhhccccchhh
Confidence            45677999999999999999999999999999999999999999999999999999997 999999999875411100 0


Q ss_pred             hHHHHHHHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcch-HH
Q 016290           87 SCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HL  165 (392)
Q Consensus        87 ~~~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G-~~  165 (392)
                      ....  ...+.++..|.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++| .+
T Consensus        90 ~~~~--~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~  167 (273)
T 2uzf_A           90 QIPR--LNVLDLQRLIRIIPKPVIAMVKGYAVGGGNVLNVVCDLTIAADNAIFGQTGPKVGSFDAGYGSGYLARIVGHKK  167 (273)
T ss_dssp             SSCC--CTHHHHHHHHHHSSSCEEEEECEEEETHHHHHHHHSSEEEEETTCEEECCGGGTTCCCCSTTTHHHHHHHCHHH
T ss_pred             hHHH--hhHHHHHHHHHhCCCCEEEEECCEEeehhHHHHHhCCEEEEcCCCEEECchhhhCCCCchhHHHHHHHHhCHHH
Confidence            0000  01345677889999999999999999999999999999999999999999999999999999999999999 99


Q ss_pred             HHHHhhcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHhCc
Q 016290          166 GEFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSK  245 (392)
Q Consensus       166 a~~L~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~  245 (392)
                      +++|++||++++|+||+++||||++||++++.+.+.++                                          
T Consensus       168 A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~------------------------------------------  205 (273)
T 2uzf_A          168 AREIWYLCRQYNAQEALDMGLVNTVVPLEKVEDETVQW------------------------------------------  205 (273)
T ss_dssp             HHHHHHTCCCEEHHHHHHHTSSSEEECGGGSHHHHHHH------------------------------------------
T ss_pred             HHHHHHhCCCCCHHHHHHcCCCccccCHHHHHHHHHHH------------------------------------------
Confidence            99999999999999999999999999998887644433                                          


Q ss_pred             CCHHHHHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHH-HHHHHHHHcCCccHHHHHH
Q 016290          246 ETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEF-RLTINILRAIISADIYEGI  324 (392)
Q Consensus       246 ~~~eei~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~-~~~~~~~~~~~~~d~~eGv  324 (392)
                                               +++|++.||.+++.+|++++  ...++.+++..|. ..+..++.+   +|++||+
T Consensus       206 -------------------------a~~la~~~~~a~~~~K~~l~--~~~~~~~~l~~e~~~~~~~~~~s---~d~~egi  255 (273)
T 2uzf_A          206 -------------------------CKEIMKHSPTALRFLKAAMN--ADTDGLAGLQQMAGDATLLYYTT---DEAKEGR  255 (273)
T ss_dssp             -------------------------HHHHTTSCHHHHHHHHHHHH--HHHSHHHHHHHHHHHHHHHHHTS---HHHHHHH
T ss_pred             -------------------------HHHHHhCCHHHHHHHHHHHH--ccCCHHHHHHHHHHHHHHHHhcC---hHHHHHH
Confidence                                     78899999999999999999  3457899999999 888899999   9999999


Q ss_pred             HHHHhccCCCCCCCCC
Q 016290          325 RALTIEKDNAPKWDPP  340 (392)
Q Consensus       325 ~a~l~dK~r~P~w~~~  340 (392)
                      +||+ +| |+|+|+++
T Consensus       256 ~af~-ek-r~p~f~~~  269 (273)
T 2uzf_A          256 DAFK-EK-RDPDFDQF  269 (273)
T ss_dssp             HHHH-TT-SCCCCSSS
T ss_pred             HHHH-hc-CCCCCCCC
Confidence            9999 66 99999875

>3t89_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.95A {Escherichia coli} PDB: 3t88_A 4elx_A 4elw_A 4els_A 3h02_A 2iex_A

Probab=100.00  E-value=3.6e-56  Score=427.39  Aligned_cols=260  Identities=20%  Similarity=0.268  Sum_probs=221.9

Q ss_pred             CCCCCcEEEEEe-CCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCC-CccccCCCchhhccCCCCc
Q 016290            8 NPDEQVVLGEEI-GNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVG-RAFSAGGDLKMFYDGRNSK   85 (392)
Q Consensus         8 ~~~~~~V~~~~~-~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G-~~FcaG~Dl~~l~~~~~~~   85 (392)
                      ++.++.|+++.+ ++|++||||||+++|+||.+|+.+|.++++.++.|++|++|||||.| ++||+|+|++++.......
T Consensus        23 ~~~~~~v~~~~~~~~va~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~  102 (289)
T 3t89_A           23 SEGFEDIRYEKSTDGIAKITINRPQVRNAFRPLTVKEMIQALADARYDDNIGVIILTGAGDKAFCSGGDQKVRGDYGGYK  102 (289)
T ss_dssp             CTTCSSEEEEEETTSEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSSEEECCBCCC---------
T ss_pred             CCCCCeEEEEEecCCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCceEEEEEcCCCCCccCCCChhhhhccccch
Confidence            455678999999 99999999999999999999999999999999999999999999999 6999999999885421111


Q ss_pred             hhHHHHHHHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcch-H
Q 016290           86 DSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-H  164 (392)
Q Consensus        86 ~~~~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G-~  164 (392)
                      .....+....+.++..|.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|+.|++++|+|++| .
T Consensus       103 ~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~~~~~g~~~L~r~vG~~  182 (289)
T 3t89_A          103 DDSGVHHLNVLDFQRQIRTCPKPVVAMVAGYSIGGGHVLHMMCDLTIAADNAIFGQTGPKVGSFDGGWGASYMARIVGQK  182 (289)
T ss_dssp             -------CTHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTCCCCSTTTHHHHHHHCHH
T ss_pred             hhhHHHHHHHHHHHHHHHcCCCCEEEEECCEeehHHHHHHHhCCEEEEeCCCEEeccccccCCCCCchHHHHHHHhcCHH
Confidence            111112223456888999999999999999999999999999999999999999999999998888888999999999 8


Q ss_pred             HHHHHhhcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHhC
Q 016290          165 LGEFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFS  244 (392)
Q Consensus       165 ~a~~L~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~  244 (392)
                      ++++|++||++++|+||+++||||++||++++.+.+.++                                         
T Consensus       183 ~A~~llltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~~-----------------------------------------  221 (289)
T 3t89_A          183 KAREIWFLCRQYDAKQALDMGLVNTVVPLADLEKETVRW-----------------------------------------  221 (289)
T ss_dssp             HHHHHHHHCCCEEHHHHHHHTSSSEEECGGGHHHHHHHH-----------------------------------------
T ss_pred             HHHHHHHcCCcccHHHHHHCCCceEeeCHHHHHHHHHHH-----------------------------------------
Confidence            999999999999999999999999999999887654444                                         


Q ss_pred             cCCHHHHHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHcCCccHHHHHH
Q 016290          245 KETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGI  324 (392)
Q Consensus       245 ~~~~eei~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eGv  324 (392)
                                                +++|+.+||.+++.+|++++.... ...+....|...+..++.+   +|++||+
T Consensus       222 --------------------------A~~la~~~~~a~~~~K~~l~~~~~-~~~~~~~~e~~~~~~~~~s---~d~~Eg~  271 (289)
T 3t89_A          222 --------------------------CREMLQNSPMALRCLKAALNADCD-GQAGLQELAGNATMLFYMT---EEGQEGR  271 (289)
T ss_dssp             --------------------------HHHHHTSCHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHTTS---STTTHHH
T ss_pred             --------------------------HHHHHcCCHHHHHHHHHHHHhhcc-cchHHHHHHHHHHHHHhcC---HHHHHHH
Confidence                                      789999999999999999998754 2444455677777778888   9999999


Q ss_pred             HHHHhccCCCCCCCCC
Q 016290          325 RALTIEKDNAPKWDPP  340 (392)
Q Consensus       325 ~a~l~dK~r~P~w~~~  340 (392)
                      +||+ +| |+|+|++.
T Consensus       272 ~AF~-ek-R~P~f~~~  285 (289)
T 3t89_A          272 NAFN-QK-RQPDFSKF  285 (289)
T ss_dssp             HHHH-TT-SCCCCTTS
T ss_pred             HHHh-cC-CCCCCCCC
Confidence            9999 66 99999865

>3pe8_A Enoyl-COA hydratase; emerald biostructures, structural genomics, seattle structur genomics center for infectious disease, ssgcid, lyase; 1.60A {Mycobacterium smegmatis} PDB: 3p85_A* 3qyr_A

Probab=100.00  E-value=9.6e-57  Score=424.37  Aligned_cols=252  Identities=23%  Similarity=0.319  Sum_probs=206.6

Q ss_pred             CCCCCCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCch
Q 016290            7 KNPDEQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKD   86 (392)
Q Consensus         7 ~~~~~~~V~~~~~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~   86 (392)
                      .|.+++.|+++.+++|++||||||+++|+||.+|+.+|.++|+.++.|++|++|||||.|++||+|+|++++...    .
T Consensus         4 ~m~~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vvltg~g~~F~aG~Dl~~~~~~----~   79 (256)
T 3pe8_A            4 SMADSPVLLVDTTDRVRTLTLNRPQSRNALSAELRSTFFRALSDAQNDDDVDVVIVTGADPVFCAGLDLKELGDT----T   79 (256)
T ss_dssp             ----CCSEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCSEEEEEESTTCSBCCBCTTTC--------
T ss_pred             CCCCCCcEEEEEECCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEECCCCCccCCcCHHHHhhh----H
Confidence            466677899999999999999999999999999999999999999999999999999999999999999987642    0


Q ss_pred             hHHHHHHHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcch-HH
Q 016290           87 SCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HL  165 (392)
Q Consensus        87 ~~~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G-~~  165 (392)
                             ....+...+.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++| .+
T Consensus        80 -------~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~  152 (256)
T 3pe8_A           80 -------ELPDISPKWPDMTKPVIGAINGAAVTGGLELALYCDILIASENAKFADTHARVGLMPTWGLSVRLPQKVGVGL  152 (256)
T ss_dssp             ------------CCCCCCCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTCCCCSSHHHHHHHHHCHHH
T ss_pred             -------HHHHHHHHHHhCCCCEEEEECCeeechHHHHHHhCCEEEEcCCCEEECchhhhCCCCcccHHHHHHHhcCHHH
Confidence                   1122346678999999999999999999999999999999999999999999999999999999999999 99


Q ss_pred             HHHHhhcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHhCc
Q 016290          166 GEFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSK  245 (392)
Q Consensus       166 a~~L~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~  245 (392)
                      +++|++||++++|+||+++||||++||++++.+.+.++                                          
T Consensus       153 A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~------------------------------------------  190 (256)
T 3pe8_A          153 ARRMSLTGDYLSAQDALRAGLVTEVVAHDDLLTAARRV------------------------------------------  190 (256)
T ss_dssp             HHHHHHHCCCEEHHHHHHHTSCSCEECGGGHHHHHHHH------------------------------------------
T ss_pred             HHHHHHcCCCCCHHHHHHCCCCeEEeCHhHHHHHHHHH------------------------------------------
Confidence            99999999999999999999999999998887655444                                          


Q ss_pred             CCHHHHHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHcCCccHHHHHHH
Q 016290          246 ETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGIR  325 (392)
Q Consensus       246 ~~~eei~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eGv~  325 (392)
                                               +++|++.||.+++.+|++++.....++++++..|...+...+.+..++|++|+++
T Consensus       191 -------------------------a~~la~~~~~a~~~~K~~~~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~e~~~  245 (256)
T 3pe8_A          191 -------------------------AASIVGNNQKAVRALLDSYHRIDALQTGGALWAEAEAARQWMRSTSGDDIAASRA  245 (256)
T ss_dssp             -------------------------HHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----------
T ss_pred             -------------------------HHHHHcCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhhcccchHHHHHHH
Confidence                                     7899999999999999999999989999999999999877765544488899999


Q ss_pred             HHHhccCCCCCCC
Q 016290          326 ALTIEKDNAPKWD  338 (392)
Q Consensus       326 a~l~dK~r~P~w~  338 (392)
                      +|+ +| ++|.|.
T Consensus       246 afl-ek-~k~~~~  256 (256)
T 3pe8_A          246 SVI-ER-GRSQVR  256 (256)
T ss_dssp             -------------
T ss_pred             HHH-hc-cCccCC
Confidence            999 66 899994

>4eml_A Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coenzyme A, lyase; 2.04A {Synechocystis SP}

Probab=100.00  E-value=4.2e-56  Score=424.29  Aligned_cols=258  Identities=20%  Similarity=0.257  Sum_probs=221.4

Q ss_pred             CCCCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEc-----CC-CccccCCCchhhccCC
Q 016290            9 PDEQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKG-----VG-RAFSAGGDLKMFYDGR   82 (392)
Q Consensus         9 ~~~~~V~~~~~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g-----~G-~~FcaG~Dl~~l~~~~   82 (392)
                      +.++.|+++.+++|++||||||+++|+||.+|+.+|.++|+.++.|++|++|||||     +| ++||+|+|++++....
T Consensus         7 ~~~~~v~~~~~~~va~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~~~~~~G~~~F~aG~Dl~~~~~~~   86 (275)
T 4eml_A            7 KHYDDILYYKAGGIAKIVINRPHKRNAFRPQTVFELYDAFCNAREDNRIGVVLLTGAGPHSDGKYAFCSGGDQSVRGEGG   86 (275)
T ss_dssp             EECSSEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEECCCCTTSCCEEECCBCCC------
T ss_pred             cCCceEEEEEECCEEEEEecCCCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEeCCCcCcCCCCceeCCcChhhhhccc
Confidence            34678999999999999999999999999999999999999999999999999999     89 6999999999886421


Q ss_pred             CCchhHHHHHHHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcc
Q 016290           83 NSKDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLP  162 (392)
Q Consensus        83 ~~~~~~~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~  162 (392)
                      ..... .......+.++..|.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|+.|++++|+|++
T Consensus        87 ~~~~~-~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~~g~~~L~r~v  165 (275)
T 4eml_A           87 YIDDQ-GTPRLNVLDLQRLIRSMPKVVIALVAGYAIGGGHVLHLVCDLTIAADNAIFGQTGPKVGSFDGGFGSSYLARIV  165 (275)
T ss_dssp             ---------CCCHHHHHHHHHHSSSEEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTCCCCSTTTHHHHHHH
T ss_pred             ccchh-hHHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEECcccccCCCCCccHHHHHHHHh
Confidence            10100 11111235678889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             h-HHHHHHhhcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHH
Q 016290          163 G-HLGEFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDE  241 (392)
Q Consensus       163 G-~~a~~L~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~  241 (392)
                      | .++++|++||++++|+||+++||||++||++++.+.+.++                                      
T Consensus       166 G~~~A~~llltg~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~--------------------------------------  207 (275)
T 4eml_A          166 GQKKAREIWYLCRQYSAQEAERMGMVNTVVPVDRLEEEGIQW--------------------------------------  207 (275)
T ss_dssp             CHHHHHHHHHHCCCEEHHHHHHHTSCSEEECGGGHHHHHHHH--------------------------------------
T ss_pred             HHHHHHHHHHhCCCcCHHHHHHcCCccEeeCHHHHHHHHHHH--------------------------------------
Confidence            9 9999999999999999999999999999998887644444                                      


Q ss_pred             HhCcCCHHHHHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHcCCccHHH
Q 016290          242 CFSKETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIY  321 (392)
Q Consensus       242 ~f~~~~~eei~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~  321 (392)
                                                   +++|+++||.+++.+|+++++... ...+....|...+..++.+   +|++
T Consensus       208 -----------------------------a~~la~~~~~a~~~~K~~l~~~~~-~~~~~~~~~~~~~~~~~~s---~d~~  254 (275)
T 4eml_A          208 -----------------------------AKEILSKSPLAIRCLKAAFNADCD-GQAGLQELAGNATLLYYMT---EEGS  254 (275)
T ss_dssp             -----------------------------HHHHHTSCHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHTS---HHHH
T ss_pred             -----------------------------HHHHHhCCHHHHHHHHHHHHhhhc-cchhHHHHHHHHHHHHhcC---HHHH
Confidence                                         789999999999999999998754 2444556677777888888   9999


Q ss_pred             HHHHHHHhccCCCCCCCCC
Q 016290          322 EGIRALTIEKDNAPKWDPP  340 (392)
Q Consensus       322 eGv~a~l~dK~r~P~w~~~  340 (392)
                      ||++||+ +| |+|+|++.
T Consensus       255 eg~~AF~-ek-R~p~f~~~  271 (275)
T 4eml_A          255 EGKQAFL-EK-RPPDFSQY  271 (275)
T ss_dssp             HHHHHHH-TT-SCCCCTTC
T ss_pred             HHHHHHH-cC-CCCCCCCC
Confidence            9999999 66 99999865

>2f6q_A Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxisomes, fatty acid metabolism, STR genomics, structural genomics consortium, SGC; 1.95A {Homo sapiens} SCOP: c.14.1.3

Probab=100.00  E-value=1.9e-55  Score=420.96  Aligned_cols=255  Identities=17%  Similarity=0.263  Sum_probs=216.9

Q ss_pred             CCCCCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCch-
Q 016290            8 NPDEQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKD-   86 (392)
Q Consensus         8 ~~~~~~V~~~~~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~-   86 (392)
                      .+.++.|.++.+++|++||||||+++|+||.+|+.+|.++|+.++.|+++ +|||||.|++||+|+|++++........ 
T Consensus        22 ~~~~~~i~~~~~~~va~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~v-~vVltg~g~~FcaG~Dl~~~~~~~~~~~~  100 (280)
T 2f6q_A           22 SMGFETLVVTSEDGITKIMFNRPKKKNAINTEMYHEIMRALKAASKDDSI-ITVLTGNGDYYSSGNDLTNFTDIPPGGVE  100 (280)
T ss_dssp             EEECSSEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHSSCS-EEEEEESTTCSBCCBCC----CCCTTHHH
T ss_pred             cCCCCeEEEEEECCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHhhCCCE-EEEEeCCCCCcccCCCHHHHhhcCcchhh
Confidence            33566799999999999999999999999999999999999999999999 9999999999999999999865322111 


Q ss_pred             h-HHHHHHHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcch-H
Q 016290           87 S-CLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-H  164 (392)
Q Consensus        87 ~-~~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G-~  164 (392)
                      . ...+.....+++..|.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++| .
T Consensus       101 ~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~  180 (280)
T 2f6q_A          101 EKAKNNAVLLREFVGCFIDFPKPLIAVVNGPAVGISVTLLGLFDAVYASDRATFHTPFSHLGQSPEGCSSYTFPKIMSPA  180 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCCSCEEEEECSCEETHHHHGGGGCSEEEEETTCEEECCTGGGTCCCCTTHHHHHHHHHCHH
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCCEEEEECCeeehHHHHHHHhCCEEEECCCcEEECchHhhCCCCcccHHHHHHHHhCHH
Confidence            1 1223344567788999999999999999999999999999999999999999999999999999999999999999 8


Q ss_pred             HHHHHhhcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHhC
Q 016290          165 LGEFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFS  244 (392)
Q Consensus       165 ~a~~L~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~  244 (392)
                      ++++|++||++++|+||+++||||++||++++.+.+.++                                         
T Consensus       181 ~A~~l~ltg~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~-----------------------------------------  219 (280)
T 2f6q_A          181 KATEMLIFGKKLTAGEACAQGLVTEVFPDSTFQKEVWTR-----------------------------------------  219 (280)
T ss_dssp             HHHHHHTTCCCEEHHHHHHTTSCSEEECTTTHHHHHHHH-----------------------------------------
T ss_pred             HHHHHHHcCCCCCHHHHHHCCCcceEECHHHHHHHHHHH-----------------------------------------
Confidence            999999999999999999999999999999887644433                                         


Q ss_pred             cCCHHHHHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHcCCccHHHHHH
Q 016290          245 KETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGI  324 (392)
Q Consensus       245 ~~~~eei~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eGv  324 (392)
                                                +++|++.||.+++.+|++++.....++++++..|...+..++.+   +|++||+
T Consensus       220 --------------------------a~~la~~~~~a~~~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~s---~d~~eg~  270 (280)
T 2f6q_A          220 --------------------------LKAFAKLPPNALRISKEVIRKREREKLHAVNAEECNVLQGRWLS---DECTNAV  270 (280)
T ss_dssp             --------------------------HHHHTTSCHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHTS---HHHHC--
T ss_pred             --------------------------HHHHHhCCHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHhCC---HHHHHHH
Confidence                                      78899999999999999999988888999999999999999999   9999999


Q ss_pred             HHHHhccCCCC
Q 016290          325 RALTIEKDNAP  335 (392)
Q Consensus       325 ~a~l~dK~r~P  335 (392)
                      ++|+ +| |+|
T Consensus       271 ~af~-ek-R~p  279 (280)
T 2f6q_A          271 VNFL-SR-KSK  279 (280)
T ss_dssp             -----------
T ss_pred             HHHH-cc-CCC
Confidence            9999 66 766

>3gkb_A Putative enoyl-COA hydratase; structural genomics, unknown function, PSI-2, protein struct initiative; 1.80A {Streptomyces avermitilis}

Probab=100.00  E-value=5.8e-57  Score=432.50  Aligned_cols=262  Identities=16%  Similarity=0.166  Sum_probs=227.8

Q ss_pred             CCCCCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCC-CccccCCCchhhccCCCCc-
Q 016290            8 NPDEQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVG-RAFSAGGDLKMFYDGRNSK-   85 (392)
Q Consensus         8 ~~~~~~V~~~~~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G-~~FcaG~Dl~~l~~~~~~~-   85 (392)
                      .++++.|.++++++|++||||||+ +|+||.+|+.+|.++|+.++.|++||+|||||+| ++||+|+|++++....... 
T Consensus         5 ~~~~~~i~~~~~~~va~itlnrP~-~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~~FcaG~Dl~~~~~~~~~~~   83 (287)
T 3gkb_A            5 NDAYSTLRVSSEHGVARIILDNPP-VNVIGATMMRELRTVLTTLADDSSVRVIVFSSADPEFFLAHVDMRIGEKMDALQE   83 (287)
T ss_dssp             --CCSSEEEEEETTEEEEEECCTT-TTCBCHHHHHHHHHHHHHHHTCTTCCEEEEEESSSSEEECCBCTTGGGSHHHHHH
T ss_pred             CCCCCeEEEEEECCEEEEEECCCC-CCCCCHHHHHHHHHHHHHHHcCCCeeEEEEecCCCCceeCCcCHHHHhhccccch
Confidence            345778999999999999999998 7999999999999999999999999999999999 8999999999886321000 


Q ss_pred             --hhHHHHHHHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeC-CeeeeccccccCccCCchhHHHHhhcc
Q 016290           86 --DSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTE-KTVFSTPEASIGFHTDCGFSFIHSRLP  162 (392)
Q Consensus        86 --~~~~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate-~a~f~~PE~~iGl~P~~G~s~~L~rl~  162 (392)
                        .....++...++++..|.++|||+||+|||+|+|||++|+++||+|||++ +++|++||+++|++|++|++++|+|++
T Consensus        84 ~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~lGl~p~~g~~~~L~r~v  163 (287)
T 3gkb_A           84 LAASAPADVNVFQAVGELIRHQPQVTIVKLAGKARGGGAEFVAAADMAFAAAETAGLGQIEALMGIIPGGGGTQYLRGRV  163 (287)
T ss_dssp             HHHTSCTTCCTTHHHHHHHHHCSSEEEEEECSEEETHHHHHHHHSSEEEEETTTCEEECGGGGGTSCCCSSHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHHCCEEEEeCCCcEEECcccccCCCCCchHHHHHHHHh
Confidence              00011223346788899999999999999999999999999999999999 999999999999999999999999999


Q ss_pred             h-HHHHHHhhcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHH
Q 016290          163 G-HLGEFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDE  241 (392)
Q Consensus       163 G-~~a~~L~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~  241 (392)
                      | .++++|+|||++++|+||+++||||++||++++.+.+.+                                       
T Consensus       164 G~~~A~ellltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~---------------------------------------  204 (287)
T 3gkb_A          164 GRNRALEVVLTADLFDAETAASYGWINRALPADELDEYVDR---------------------------------------  204 (287)
T ss_dssp             CHHHHHHHHHHCCCEEHHHHHHHTSSSEEECHHHHHHHHHH---------------------------------------
T ss_pred             CHHHHHHHHHcCCCCCHHHHHHCCCCcEEeChhHHHHHHHH---------------------------------------
Confidence            9 999999999999999999999999999998777654443                                       


Q ss_pred             HhCcCCHHHHHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHcCCccHHH
Q 016290          242 CFSKETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIY  321 (392)
Q Consensus       242 ~f~~~~~eei~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~  321 (392)
                                                  ++++|++.||.+++.+|+++++.   .+.++++.|...+..++.+   +|++
T Consensus       205 ----------------------------lA~~la~~~p~a~~~~K~~l~~~---~~~~~l~~e~~~~~~~~~s---~d~~  250 (287)
T 3gkb_A          205 ----------------------------VARNIAALPDGVIEAAKRSLPAD---DLKEGLLGENDAWAATFSL---PAAQ  250 (287)
T ss_dssp             ----------------------------HHHHHHTSCTTHHHHHHHHSCCC---CCHHHHHHHHHHHHHHHTS---HHHH
T ss_pred             ----------------------------HHHHHHcCCHHHHHHHHHHHHcc---CHHHHHHHHHHHHHHHhCC---HHHH
Confidence                                        37899999999999999999974   3569999999999999999   9999


Q ss_pred             HHHHHHHhccCCCCCCCCCCCCC
Q 016290          322 EGIRALTIEKDNAPKWDPPTLDK  344 (392)
Q Consensus       322 eGv~a~l~dK~r~P~w~~~~l~~  344 (392)
                      ||++||+..+++.|+|+. ++++
T Consensus       251 eg~~AF~ekr~~~P~f~~-~l~~  272 (287)
T 3gkb_A          251 QLISGGLKDGAQTPAGER-DLEG  272 (287)
T ss_dssp             HHHHHHHHTTTTSHHHHH-THHH
T ss_pred             HHHHHHHhcCCCCCchhh-hHHH
Confidence            999999943345699984 4543

>3qmj_A Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.20A {Mycobacterium marinum}

Probab=100.00  E-value=1.3e-56  Score=423.78  Aligned_cols=251  Identities=20%  Similarity=0.288  Sum_probs=189.8

Q ss_pred             CCCCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhH
Q 016290            9 PDEQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSC   88 (392)
Q Consensus         9 ~~~~~V~~~~~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~   88 (392)
                      .++..|.++.+++|++||||||+++|+||.+|+.+|.++++.++.|+++++|||||.|++||+|+|++++........ .
T Consensus         3 ~~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~-~   81 (256)
T 3qmj_A            3 GSMVTLQIDDDNRVRTLTLNRPEALNAFNEALYDATAQALLDAADDPQVAVVLLTGSGRGFSAGTDLAEMQARITDPN-F   81 (256)
T ss_dssp             ---CCEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTEEECCBCHHHHHHHHHSSS-C
T ss_pred             CCcceEEEEEECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCcccCcCHHHHhhcccchh-H
Confidence            345679999999999999999999999999999999999999999999999999999999999999999864211000 0


Q ss_pred             HHHHHHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcch-HHHH
Q 016290           89 LEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HLGE  167 (392)
Q Consensus        89 ~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G-~~a~  167 (392)
                      ..+....++++..|.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++| .+++
T Consensus        82 ~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~A~  161 (256)
T 3qmj_A           82 SEGKFGFRGLIKALAGFPKPLICAVNGLGVGIGATILGYADLAFMSSTARLKCPFTSLGVAPEAASSYLLPQLVGRQNAA  161 (256)
T ss_dssp             CCCSSHHHHHHHHHHHCCSCEEEEECSEEETHHHHGGGGCSEEEEETTCEEECCGGGC---CCTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCCCEEEEECCeehhHHHHHHHhCCEEEEeCCCEEECcccccCCCCCccHHHHHHHHhCHHHHH
Confidence            111233467888999999999999999999999999999999999999999999999999999999999999999 9999


Q ss_pred             HHhhcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHhCcCC
Q 016290          168 FLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKET  247 (392)
Q Consensus       168 ~L~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~~~  247 (392)
                      +|++||++++|+||+++||||++||++++.+.+.++                                            
T Consensus       162 ~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~--------------------------------------------  197 (256)
T 3qmj_A          162 WLLMSSEWIDAEEALRMGLVWRICSPEELLPEARRH--------------------------------------------  197 (256)
T ss_dssp             HHHHSCCCEEHHHHHHHTSSSEEECGGGHHHHHHHH--------------------------------------------
T ss_pred             HHHHcCCCCCHHHHHHCCCccEEeCHhHHHHHHHHH--------------------------------------------
Confidence            999999999999999999999999998887654444                                            


Q ss_pred             HHHHHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHcCCccHHHHHHHHH
Q 016290          248 VAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGIRAL  327 (392)
Q Consensus       248 ~eei~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eGv~a~  327 (392)
                                             +++|++.||.+++.+|+++++....+++++++.|...+..++.+   +|++||++||
T Consensus       198 -----------------------a~~la~~~~~a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s---~d~~eg~~af  251 (256)
T 3qmj_A          198 -----------------------AEILAAKPISSLMAVKHTMVEPNRAQIAAASARENAHFAELMGA---QANAAALADF  251 (256)
T ss_dssp             -----------------------HHHHHTSCHHHHHHHHHHHHCC-----------------------------------
T ss_pred             -----------------------HHHHHhCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcC---HHHHHHHHHH
Confidence                                   78999999999999999999998889999999999999999999   9999999999


Q ss_pred             Hhcc
Q 016290          328 TIEK  331 (392)
Q Consensus       328 l~dK  331 (392)
                      + +|
T Consensus       252 ~-ek  254 (256)
T 3qmj_A          252 T-DR  254 (256)
T ss_dssp             ----
T ss_pred             H-cc
Confidence            9 66

>3he2_A Enoyl-COA hydratase ECHA6; fatty acid metabolism, lipid metabolism, lyase, structural genomics; HET: PGE; 2.30A {Mycobacterium tuberculosis}

Probab=100.00  E-value=8.6e-56  Score=419.20  Aligned_cols=247  Identities=20%  Similarity=0.254  Sum_probs=216.2

Q ss_pred             CCCCCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchh
Q 016290            8 NPDEQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDS   87 (392)
Q Consensus         8 ~~~~~~V~~~~~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~   87 (392)
                      ...+..|.++++++|++||||||+++|+||.+|+.+|.++|+.++.| +|++|||||+|++||+|+|++...   . .  
T Consensus        17 ~~~~~~i~~~~~~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d-~vr~vVltg~G~~FcaG~Dl~~~~---~-~--   89 (264)
T 3he2_A           17 QGPGSMIGITQAEAVLTIELQRPERRNALNSQLVEELTQAIRKAGDG-SARAIVLTGQGTAFCAGADLSGDA---F-A--   89 (264)
T ss_dssp             -----CEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHCC----CCSEEEEEESSSCSBCCBCCTTCT---T-G--
T ss_pred             CCCCCeEEEEEECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHhhC-CceEEEEECCCCCccCCcCCccch---h-h--
Confidence            44556799999999999999999999999999999999999999988 999999999999999999998321   1 1  


Q ss_pred             HHHHHHHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcch-HHH
Q 016290           88 CLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HLG  166 (392)
Q Consensus        88 ~~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G-~~a  166 (392)
                       ..+....++++..|.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++| .++
T Consensus        90 -~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A  168 (264)
T 3he2_A           90 -ADYPDRLIELHKAMDASPMPVVGAINGPAIGAGLQLAMQCDLRVVAPDAFFQFPTSKYGLALDNWSIRRLSSLVGHGRA  168 (264)
T ss_dssp             -GGHHHHHHHHHHHHHHCSSCEEEEECSCEETHHHHHHHHSSEEEECTTCEEECTHHHHTCCCCHHHHHHHHHHHCHHHH
T ss_pred             -HHHHHHHHHHHHHHHhCCCCEEEEECCcEEcchhHHHHhCCEEEEcCCCEEECcccccCcCCcchHHHHHHHHhCHHHH
Confidence             234455677889999999999999999999999999999999999999999999999999999999999999999 999


Q ss_pred             HHHhhcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHhCcC
Q 016290          167 EFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKE  246 (392)
Q Consensus       167 ~~L~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~~  246 (392)
                      ++|++||++++|+||+++||||++++   ++ .+                                              
T Consensus       169 ~~llltG~~i~A~eA~~~GLV~~v~~---~~-~a----------------------------------------------  198 (264)
T 3he2_A          169 RAMLLSAEKLTAEIALHTGMANRIGT---LA-DA----------------------------------------------  198 (264)
T ss_dssp             HHHHHHCCCEEHHHHHHHTSCSEECC---HH-HH----------------------------------------------
T ss_pred             HHHHHcCCCccHHHHHHCCCeEEEec---HH-HH----------------------------------------------
Confidence            99999999999999999999999986   22 11                                              


Q ss_pred             CHHHHHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHcCCccHHHHHHHH
Q 016290          247 TVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGIRA  326 (392)
Q Consensus       247 ~~eei~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eGv~a  326 (392)
                                           .+++++|++.||.+++.+|++++..  .++++.+..|...+..++.+   +|++||++|
T Consensus       199 ---------------------~~~A~~la~~~p~a~~~~K~~l~~~--~~~~~~~~~e~~~~~~~~~s---~d~~Eg~~A  252 (264)
T 3he2_A          199 ---------------------QAWAAEIARLAPLAIQHAKRVLNDD--GAIEEAWPAHKELFDKAWGS---QDVIEAQVA  252 (264)
T ss_dssp             ---------------------HHHHHHHHTSCHHHHHHHHHHHHTS--SCSCCCCHHHHHHHHHHHTS---HHHHHHHHH
T ss_pred             ---------------------HHHHHHHHcCCHHHHHHHHHHHHcc--CCHHHHHHHHHHHHHHHhCC---HHHHHHHHH
Confidence                                 2337899999999999999999986  35667788899999999999   999999999


Q ss_pred             HHhccCCCCCCCCC
Q 016290          327 LTIEKDNAPKWDPP  340 (392)
Q Consensus       327 ~l~dK~r~P~w~~~  340 (392)
                      |+ +| |+|+|+++
T Consensus       253 F~-ek-R~P~f~g~  264 (264)
T 3he2_A          253 RM-EK-RPPKFQGA  264 (264)
T ss_dssp             HH-TT-SCCCCCCC
T ss_pred             Hh-cC-CCCCCCCC
Confidence            99 66 99999863

>3t8b_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.65A {Mycobacterium tuberculosis} PDB: 3t8a_A 1rjm_A* 1rjn_A* 1q52_A 1q51_A

Probab=100.00  E-value=1e-55  Score=431.29  Aligned_cols=258  Identities=19%  Similarity=0.224  Sum_probs=192.1

Q ss_pred             CCCcEEEEEe--CCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCC-------ccccCCCchhhcc
Q 016290           10 DEQVVLGEEI--GNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGR-------AFSAGGDLKMFYD   80 (392)
Q Consensus        10 ~~~~V~~~~~--~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~-------~FcaG~Dl~~l~~   80 (392)
                      ++..|++++.  ++|++||||||+++|+||.+|+.+|.++|+.++.|++|++|||||+|+       +||+|+|++++..
T Consensus        53 ~~~~i~~~~~~~~gVa~ItlnrP~~~NAl~~~~~~eL~~al~~~~~d~~vrvVVltG~G~~~~~~~~~FcaG~Dl~~~~~  132 (334)
T 3t8b_A           53 DLTDITYHRHVDDATVRVAFNRPEVRNAFRPHTVDELYRVLDHARMSPDVGVVLLTGNGPSPKDGGWAFCSGGDQRIRGR  132 (334)
T ss_dssp             TCSSEEEEEESSSSEEEEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEECCCCTTTCCCEEECCSCTTTTC-
T ss_pred             CCceEEEEEeccCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEeCCCCCcCCCCCcccCCCCHHHhhc
Confidence            4678999987  999999999999999999999999999999999999999999999994       9999999998753


Q ss_pred             CCC---Cc------hhHHHHHHHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEe-CCeeeeccccccCccC
Q 016290           81 GRN---SK------DSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVT-EKTVFSTPEASIGFHT  150 (392)
Q Consensus        81 ~~~---~~------~~~~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riat-e~a~f~~PE~~iGl~P  150 (392)
                      ...   ..      .....+......++..|.++||||||+|||+|+|||++|+++||+|||+ ++++|++||+++|++|
T Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAaV~G~A~GgG~~LalacD~riAs~~~A~f~~pe~~lGl~p  212 (334)
T 3t8b_A          133 SGYQYASGDTADTVDVARAGRLHILEVQRLIRFMPKVVICLVNGWAAGGGHSLHVVCDLTLASREYARFKQTDADVGSFD  212 (334)
T ss_dssp             ---------------------CCHHHHHHHHHHSSSEEEEEECSEEETHHHHHHHHSSEEEEETTTCEEECCCTTCSSSS
T ss_pred             ccccccccccchhhhHHHHHHHHHHHHHHHHHhCCCCEEEEECCccccCcchhHhhCCEEEEeCCCcEEECcccccCCCC
Confidence            211   00      0001112234567888999999999999999999999999999999999 9999999999999999


Q ss_pred             CchhHHHHhhcch-HHHHHHhhcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCCh
Q 016290          151 DCGFSFIHSRLPG-HLGEFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDG  229 (392)
Q Consensus       151 ~~G~s~~L~rl~G-~~a~~L~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~  229 (392)
                      ++|++++|+|++| .++++|+|||++++|+||+++||||+|||++++.+.+.++                          
T Consensus       213 ~~gg~~~L~r~vG~~~A~ellltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~~--------------------------  266 (334)
T 3t8b_A          213 GGYGSAYLARQVGQKFAREIFFLGRTYTAEQMHQMGAVNAVAEHAELETVGLQW--------------------------  266 (334)
T ss_dssp             CCSCHHHHHHHHHHHHHHHHHHHCCEEEHHHHHHHTSCSEEECGGGHHHHHHHH--------------------------
T ss_pred             cccHHHHHHHHhhHHHHHHHHHhCCcCCHHHHHHCCCCcEecCHHHHHHHHHHH--------------------------
Confidence            9999999999999 9999999999999999999999999999998887654444                          


Q ss_pred             hhHHHHHHHHHHHhCcCCHHHHHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHHH
Q 016290          230 QSVLNKQSIIDECFSKETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTI  309 (392)
Q Consensus       230 ~~~~~~~~~i~~~f~~~~~eei~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~  309 (392)
                                                               +++|+++||.+++.+|++++.... .+.+.+..|...+.
T Consensus       267 -----------------------------------------A~~ia~~~p~a~~~~K~~l~~~~~-~~~~~~~~e~~~~~  304 (334)
T 3t8b_A          267 -----------------------------------------AAEINAKSPQAQRMLKFAFNLLDD-GLVGQQLFAGEATR  304 (334)
T ss_dssp             -----------------------------------------HHHHHTSCHHHHHHHHHHHHHTCC-CC------------
T ss_pred             -----------------------------------------HHHHHhCCHHHHHHHHHHHHhhhc-chHHHHHHHHHHHH
Confidence                                                     789999999999999999998754 45556667777778


Q ss_pred             HHHHcCCccHHHHHHHHHHhccCCCCCCCCC
Q 016290          310 NILRAIISADIYEGIRALTIEKDNAPKWDPP  340 (392)
Q Consensus       310 ~~~~~~~~~d~~eGv~a~l~dK~r~P~w~~~  340 (392)
                      .++.+   +|++||++||+ +| |+|+|++.
T Consensus       305 ~~~~s---~d~~Eg~~AFl-eK-R~P~f~~~  330 (334)
T 3t8b_A          305 LAYMT---DEAVEGRDAFL-QK-RPPDWSPF  330 (334)
T ss_dssp             -------------------------------
T ss_pred             HHhcC---HHHHHHHHHHH-cC-CCCCCCCC
Confidence            88888   99999999999 66 99999864

>3lao_A Enoyl-COA hydratase/isomerase; alpha-beta sandwich, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.40A {Pseudomonas aeruginosa}

Probab=100.00  E-value=1.6e-56  Score=423.75  Aligned_cols=249  Identities=20%  Similarity=0.241  Sum_probs=194.8

Q ss_pred             CCCCCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchh
Q 016290            8 NPDEQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDS   87 (392)
Q Consensus         8 ~~~~~~V~~~~~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~   87 (392)
                      .+.++.|.++++++|++||||||+++|+||.+|+.+|.++|+.++.|++|++|||||.|+.||+|+|++++........ 
T Consensus         8 ~~~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~-   86 (258)
T 3lao_A            8 NSGPGRVTREQRGHLFLIGLDRAGKRNAFDSAMLADLALAMGEYERSEESRCAVLFAHGEHFTAGLDLMELAPKLAASG-   86 (258)
T ss_dssp             CCSSCCEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSCSBCCBCHHHHGGGCBTTB-
T ss_pred             CCCCCeEEEEEECCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhhCCCcEEEEEECCCCCeecCcCHHHHhhccchhh-
Confidence            3456789999999999999999999999999999999999999999999999999999988999999999875322110 


Q ss_pred             HHHHHHHHHHHHHHH-HhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcch-HH
Q 016290           88 CLEVVYRMYWLCHHI-HTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HL  165 (392)
Q Consensus        88 ~~~~~~~~~~l~~~i-~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G-~~  165 (392)
                       ..+....++++..+ .++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++| .+
T Consensus        87 -~~~~~~~~~~~~~l~~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~  165 (258)
T 3lao_A           87 -FRYPDGGVDPWGVVQPRRSKPLVVAVQGTCWTAGIELMLNADIAVAARGTRFAHLEVLRGIPPLGGSTVRFPRAAGWTD  165 (258)
T ss_dssp             -CCCCTTCCCTTSCSSSCCCSCEEEEECSEEETHHHHHHHTSSEEEEETTCEEECGGGGTCCCSSCCCCSHHHHHHCHHH
T ss_pred             -HHHHHHHHHHHHHHHHhCCCCEEEEECCEeEhHHHHHHHhCCEEEEcCCCEEeCcccccCCCCCccHHHHHHHHhCHHH
Confidence             11112223445677 8999999999999999999999999999999999999999999999999999999999999 99


Q ss_pred             HHHHhhcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHhCc
Q 016290          166 GEFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSK  245 (392)
Q Consensus       166 a~~L~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~  245 (392)
                      +++|++||++++|+||+++||||++||++++.+.+.++                                          
T Consensus       166 A~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~------------------------------------------  203 (258)
T 3lao_A          166 AMRYILTGDEFDADEALRMRLLTEVVEPGEELARALEY------------------------------------------  203 (258)
T ss_dssp             HHHHHTTCCCEEHHHHHHTTSCSEEECTTCHHHHHHHH------------------------------------------
T ss_pred             HHHHHHcCCCCCHHHHHHcCCCcEeeChhHHHHHHHHH------------------------------------------
Confidence            99999999999999999999999999999987644443                                          


Q ss_pred             CCHHHHHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHcCCccHHHHHHH
Q 016290          246 ETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGIR  325 (392)
Q Consensus       246 ~~~eei~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eGv~  325 (392)
                                               +++|++.||.+++.+|+++++....+++++++.|.+.+..++.+   +|++||++
T Consensus       204 -------------------------a~~la~~~~~a~~~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~s---~d~~eg~~  255 (258)
T 3lao_A          204 -------------------------AERIARAAPLAVRAALQSAFQGRDEGDDAALSRVNESLAALIGS---EDVREGVL  255 (258)
T ss_dssp             -------------------------HHHHHHSCHHHHHHHHHHHHHHTC-------------------------------
T ss_pred             -------------------------HHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCC---HHHHHHHH
Confidence                                     78999999999999999999998899999999999999999999   99999999


Q ss_pred             HHH
Q 016290          326 ALT  328 (392)
Q Consensus       326 a~l  328 (392)
                      ||+
T Consensus       256 AF~  258 (258)
T 3lao_A          256 AMV  258 (258)
T ss_dssp             ---
T ss_pred             hhC
Confidence            996

>2a7k_A CARB; crotonase, antibiotic, beta-lactam, biosynthetic protein; 2.24A {Pectobacterium carotovorum} SCOP: c.14.1.3 PDB: 2a81_A*

Probab=100.00  E-value=3.8e-55  Score=412.50  Aligned_cols=245  Identities=20%  Similarity=0.250  Sum_probs=207.1

Q ss_pred             EEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEc-CCCccccCCCchhhccCCCCchhHHHHH
Q 016290           14 VLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKG-VGRAFSAGGDLKMFYDGRNSKDSCLEVV   92 (392)
Q Consensus        14 V~~~~~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g-~G~~FcaG~Dl~~l~~~~~~~~~~~~~~   92 (392)
                      |.++.+++|++||||||+++|+||.+|+.+|.++|+.++.|+++++||||| .|++||+|+|++++..... ...+..++
T Consensus         2 v~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~~g~~F~aG~Dl~~~~~~~~-~~~~~~~~   80 (250)
T 2a7k_A            2 VFEENSDEVRVITLDHPNKHNPFSRTLETSVKDALARANADDSVRAVVVYGGAERSFSAGGDFNEVKQLSR-SEDIEEWI   80 (250)
T ss_dssp             EEEEEETTEEEEEECCSSTTCBCCHHHHHHHHHHHHHHHHCTTCCEEEEECCTTSCSBCBSCHHHHHTC-C-HHHHHHHH
T ss_pred             eEEEeeCCEEEEEecCCCccCCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCCCCCccCCcCHHHHhhcCc-hhhHHHHH
Confidence            678999999999999999999999999999999999999999999999999 8999999999999865321 12123455


Q ss_pred             HHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcch-HHHHHHhh
Q 016290           93 YRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HLGEFLAL  171 (392)
Q Consensus        93 ~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G-~~a~~L~l  171 (392)
                      ...++++..|.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++ +|+|++| .++++|++
T Consensus        81 ~~~~~~~~~i~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~-~l~~~vG~~~a~~l~l  159 (250)
T 2a7k_A           81 DRVIDLYQAVLNVNKPTIAAVDGYAIGMGFQFALMFDQRLMASTANFVMPELKHGIGCSVGAA-ILGFTHGFSTMQEIIY  159 (250)
T ss_dssp             HHHHHHHHHHHTCCSCEEEEECSEEETHHHHHHTTSSEEEEETTCEEECCGGGGTCCCHHHHH-HHHHHHCHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCCEEEEECCeEeHHHHHHHHhCCEEEEcCCCEEeCcccccCCCCCcHHH-HHHHHhHHHHHHHHHH
Confidence            666788899999999999999999999999999999999999999999999999999999999 9999999 99999999


Q ss_pred             cCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHhCcCCHHHH
Q 016290          172 TGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKETVAEI  251 (392)
Q Consensus       172 tG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~eei  251 (392)
                      ||++++|+||+++||||++||++++.+.+.                                                  
T Consensus       160 tg~~~~a~eA~~~GLv~~vv~~~~l~~~a~--------------------------------------------------  189 (250)
T 2a7k_A          160 QCQSLDAPRCVDYRLVNQVVESSALLDAAI--------------------------------------------------  189 (250)
T ss_dssp             HCCCBCHHHHHHHTCCSEEECHHHHHHHHH--------------------------------------------------
T ss_pred             cCCcccHHHHHHcCCcceecCHHHHHHHHH--------------------------------------------------
Confidence            999999999999999999999877665433                                                  


Q ss_pred             HHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHhcc
Q 016290          252 IKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGIRALTIEK  331 (392)
Q Consensus       252 ~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eGv~a~l~dK  331 (392)
                                       +++++|++.||.+++.+|++++.+...++++++..|.+.+..++.+   +|++||+++|+ +|
T Consensus       190 -----------------~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~s---~d~~eg~~af~-ek  248 (250)
T 2a7k_A          190 -----------------TQAHVMASYPASAFINTKRAVNKPFIHLLEQTRDASKAVHKAAFQA---RDAQGHFKNVL-GK  248 (250)
T ss_dssp             -----------------HHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC----------------------
T ss_pred             -----------------HHHHHHHcCCHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHhCC---HHHHHHHHHHH-hc
Confidence                             3378999999999999999999988888999999999999999999   99999999999 55

>4di1_A Enoyl-COA hydratase ECHA17; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis, ortholog; 2.25A {Mycobacterium marinum}

Probab=100.00  E-value=1.2e-54  Score=414.34  Aligned_cols=249  Identities=16%  Similarity=0.189  Sum_probs=218.8

Q ss_pred             CcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhHHHH
Q 016290           12 QVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEV   91 (392)
Q Consensus        12 ~~V~~~~~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~~~   91 (392)
                      +.|+++++++|++||||||++ |+||.+|+.+|.++|+.++.|++|++|||+|.|++||+|+|++++....  ......+
T Consensus        24 ~~v~~~~~~~Va~ItlnrP~~-Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~--~~~~~~~  100 (277)
T 4di1_A           24 EFVSVVADQGLATLVVSRPPT-NAMTRQVYREIVAAADELGRRDDIGAVVLFGGHEIFSAGDDMPELRTLN--APEADTA  100 (277)
T ss_dssp             CSEEEEEETTEEEEEECCTTT-TCBCHHHHHHHHHHHHHHHHCTTCCEEEEECCSSCSBCCBCHHHHHTCC--HHHHHHH
T ss_pred             ceEEEEEECCEEEEEECCCCC-CCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCCCCEecCcCcccccccC--hHHHHHH
Confidence            579999999999999999999 9999999999999999999999999999999999999999999987532  2223556


Q ss_pred             HHHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcch-HHHHHHh
Q 016290           92 VYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HLGEFLA  170 (392)
Q Consensus        92 ~~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G-~~a~~L~  170 (392)
                      ....++++..|.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++| .++++|+
T Consensus       101 ~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~p~~g~~~~L~r~vG~~~A~~ll  180 (277)
T 4di1_A          101 ARVRLEAIDAVAAIPKPTVAAVTGYALGAGLTLALAADWRVSGDNVKFGATEILAGLIPGGGGMGRLTRVVGSSRAKELV  180 (277)
T ss_dssp             HHHHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCCTTHHHHHHHHHCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCEEEEECCeEehhHHHHHHhCCEEEEcCCCEEECcccccCCCCCchHHHHHHHHhCHHHHHHHH
Confidence            666778899999999999999999999999999999999999999999999999999999999999999999 9999999


Q ss_pred             hcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHhCcCCHHH
Q 016290          171 LTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKETVAE  250 (392)
Q Consensus       171 ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~ee  250 (392)
                      +||++++|+||+++||||++||++++.+.+.++                                               
T Consensus       181 ltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~~-----------------------------------------------  213 (277)
T 4di1_A          181 FSGRFFDAEEALALGLIDDMVAPDDVYDSAVAW-----------------------------------------------  213 (277)
T ss_dssp             HHCCCEEHHHHHHHTSCSEEECGGGHHHHHHHH-----------------------------------------------
T ss_pred             HcCCCCCHHHHHHCCCccEEeChhHHHHHHHHH-----------------------------------------------
Confidence            999999999999999999999998887644444                                               


Q ss_pred             HHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHhc
Q 016290          251 IIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGIRALTIE  330 (392)
Q Consensus       251 i~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eGv~a~l~d  330 (392)
                                          +++|++.||.+++.+|++++++...+++++++.|...+..++.+   +           +
T Consensus       214 --------------------a~~la~~~~~a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s---~-----------e  259 (277)
T 4di1_A          214 --------------------ARRYLECPPRALAAAKAVINDVFELEATERAAAERRRYVELFAA---G-----------Q  259 (277)
T ss_dssp             --------------------HHTTTTSCHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHTTSG---G-----------G
T ss_pred             --------------------HHHHHcCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcC---c-----------c
Confidence                                78999999999999999999999999999999999999999888   5           5


Q ss_pred             cCCCCC--CCCCCCCCC
Q 016290          331 KDNAPK--WDPPTLDKV  345 (392)
Q Consensus       331 K~r~P~--w~~~~l~~v  345 (392)
                      | |+|+  |++++++|-
T Consensus       260 k-R~P~~~f~g~~~~~~  275 (277)
T 4di1_A          260 R-GPDGRGPGGGNTGDQ  275 (277)
T ss_dssp             C----------------
T ss_pred             c-CCCcCcCCCCCcCCC
Confidence            6 9999  999887763

>3l3s_A Enoyl-COA hydratase/isomerase family protein; crotonase superfamily, dimer of trimers, PSI-2, NYSGXRC, structural genomics; 2.32A {Ruegeria pomeroyi}

Probab=100.00  E-value=2.2e-54  Score=410.03  Aligned_cols=247  Identities=21%  Similarity=0.251  Sum_probs=211.1

Q ss_pred             CCCcEEEEE-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCC----CC
Q 016290           10 DEQVVLGEE-IGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGR----NS   84 (392)
Q Consensus        10 ~~~~V~~~~-~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~----~~   84 (392)
                      +.+.+.++. +++|++||||||++ |+||.+|+.+|.++|+.++.|++||+|||||.|++||+|+|++++....    ..
T Consensus         4 ~~~~~~~~~~~~~v~~itlnrP~~-Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~   82 (263)
T 3l3s_A            4 SQDGLLGEVLSEGVLTLTLGRAPA-HPLSRAMIAALHDALRRAMGDDHVHVLVIHGPGRIFCAGHDLKEIGRHRADPDEG   82 (263)
T ss_dssp             ----CEEEEESSSEEEEEECSTTT-CCCCHHHHHHHHHHHHHHHTCTTCCEEEEECCSSEEECCSCSCCCCC-----CCS
T ss_pred             CccceEEEEeeCCEEEEEECCCCC-CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCccCCcChHHHhhcccccccc
Confidence            344566665 89999999999999 9999999999999999999999999999999999999999999987531    11


Q ss_pred             chhHHHHHHHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcch-
Q 016290           85 KDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-  163 (392)
Q Consensus        85 ~~~~~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G-  163 (392)
                      ......++...+.++..|.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++ ++|++++|+|++| 
T Consensus        83 ~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~-~~g~~~~l~r~vG~  161 (263)
T 3l3s_A           83 RAFVTDLFEACSALMLDLAHCPKPTIALVEGIATAAGLQLMAACDLAYASPAARFCLPGVQNGGF-CTTPAVAVSRVIGR  161 (263)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCSSCEEEEESSEEETHHHHHHHHSSEEEECTTCEEECCTTTTTSC-CHHHHHHHHTTSCH
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCCEEEEECCEEEHHHHHHHHHCCEEEecCCCEEeCchhccCCC-CccHHHHHHHHcCH
Confidence            22335677778889999999999999999999999999999999999999999999999999999 5789999999999 


Q ss_pred             HHHHHHhhcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHh
Q 016290          164 HLGEFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECF  243 (392)
Q Consensus       164 ~~a~~L~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f  243 (392)
                      .++++|++||++++|+||+++||||++||++++.+.+.+                                         
T Consensus       162 ~~A~~l~ltg~~~~A~eA~~~GLv~~vv~~~~l~~~a~~-----------------------------------------  200 (263)
T 3l3s_A          162 RAVTEMALTGATYDADWALAAGLINRILPEAALATHVAD-----------------------------------------  200 (263)
T ss_dssp             HHHHHHHHHCCEEEHHHHHHHTSSSEECCHHHHHHHHHH-----------------------------------------
T ss_pred             HHHHHHHHcCCCCCHHHHHHCCCccEEeCHHHHHHHHHH-----------------------------------------
Confidence            999999999999999999999999999998777654443                                         


Q ss_pred             CcCCHHHHHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHcCCccHHHHH
Q 016290          244 SKETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEG  323 (392)
Q Consensus       244 ~~~~~eei~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eG  323 (392)
                                                ++++|++.||.+++.+|++++.....+++++++.|.+.+..++.+   +|++||
T Consensus       201 --------------------------~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s---~d~~Eg  251 (263)
T 3l3s_A          201 --------------------------LAGALAARNQAPLRRGLETLNRHLELPLEQAYALATPVMVEHFMD---PGRRHL  251 (263)
T ss_dssp             --------------------------HHHHHHSSCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHC----------
T ss_pred             --------------------------HHHHHHhCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhCC---HHHHHH
Confidence                                      378999999999999999999999999999999999999999999   999999


Q ss_pred             HHHHH
Q 016290          324 IRALT  328 (392)
Q Consensus       324 v~a~l  328 (392)
                      ++||.
T Consensus       252 ~~Af~  256 (263)
T 3l3s_A          252 DWIDE  256 (263)
T ss_dssp             -----
T ss_pred             HHHhh
Confidence            99997

>3isa_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2, protein structure initiative, EN hydratase; 1.76A {Bordetella parapertussis}

Probab=100.00  E-value=1.9e-54  Score=408.52  Aligned_cols=244  Identities=19%  Similarity=0.234  Sum_probs=210.6

Q ss_pred             cEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhHHHHH
Q 016290           13 VVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVV   92 (392)
Q Consensus        13 ~V~~~~~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~~~~   92 (392)
                      .|.++++++|++||||||+++|+||.+|+.+|.++|+.+++ +++++|||+|.|++||+|+|++++....  .......+
T Consensus         8 ~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~-~~vr~vVltg~g~~F~aG~Dl~~~~~~~--~~~~~~~~   84 (254)
T 3isa_A            8 PLAIERRPAAWTFTLSRPEKRNALSAELVEALIDGVDAAHR-EQVPLLVFAGAGRNFSAGFDFTDYETQS--EGDLLLRM   84 (254)
T ss_dssp             SEEEEECSSEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHH-TTCSEEEEEESTTCSCCCBCCTTCTTSC--HHHHHHHH
T ss_pred             eEEEEEECCEEEEEECCCCcCCCCCHHHHHHHHHHHHHhhc-CCcEEEEEECCCCceeeCcChHHhhccC--chhHHHHH
Confidence            39999999999999999999999999999999999999987 5899999999999999999999986532  22223445


Q ss_pred             HHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcch-HHHHHHhh
Q 016290           93 YRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HLGEFLAL  171 (392)
Q Consensus        93 ~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G-~~a~~L~l  171 (392)
                      ...+.++..|.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|   ++++|+|++| .++++|++
T Consensus        85 ~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p---g~~~l~~~vG~~~A~~l~l  161 (254)
T 3isa_A           85 VRIEMLLQRVAGSPSLTLALAHGRNFGAGVDLFAACKWRYCTPEAGFRMPGLKFGLVL---GTRRFRDIVGADQALSILG  161 (254)
T ss_dssp             HHHHHHHHHHHTCSSEEEEEECSEEETHHHHHHHHSSEEEECTTCEEECCGGGGTCCC---SHHHHHHHHCHHHHHHHHT
T ss_pred             HHHHHHHHHHHhCCCCEEEEECCeEeecchhHHHhCCEEEEcCCCEEECchhccCccH---HHHHHHHHcCHHHHHHHHH
Confidence            5567788999999999999999999999999999999999999999999999999998   4799999999 99999999


Q ss_pred             cCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHhCcCCHHHH
Q 016290          172 TGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKETVAEI  251 (392)
Q Consensus       172 tG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~eei  251 (392)
                      ||++++|+||+++||||++||++++.+.+.++                                                
T Consensus       162 tg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~------------------------------------------------  193 (254)
T 3isa_A          162 SARAFDADEARRIGFVRDCAAQAQWPALIDAA------------------------------------------------  193 (254)
T ss_dssp             TTCEEEHHHHHHTTSSSEECCGGGHHHHHHHH------------------------------------------------
T ss_pred             hCCCCcHHHHHHCCCccEEeChhHHHHHHHHH------------------------------------------------
Confidence            99999999999999999999998887655544                                                


Q ss_pred             HHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHhcc
Q 016290          252 IKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGIRALTIEK  331 (392)
Q Consensus       252 ~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eGv~a~l~dK  331 (392)
                                         ++++++.||.+++.+|++++..       .++.|...+..++.+   +|++||+++|+ +|
T Consensus       194 -------------------a~~la~~~~~a~~~~K~~l~~~-------~~~~e~~~~~~~~~s---~d~~egi~af~-ek  243 (254)
T 3isa_A          194 -------------------AEAATALDPATRATLHRVLRDD-------HDDADLAALARSAAQ---PGFKARIRDYL-AQ  243 (254)
T ss_dssp             -------------------HHHHTTSCHHHHHHHHHHHSCC-------CHHHHHHHHHHHHHS---TTHHHHHHHHH-HC
T ss_pred             -------------------HHHHHcCCHHHHHHHHHHHhhh-------hHHHHHHHHHHHhCC---HHHHHHHHHHH-hc
Confidence                               7899999999999999999532       345677888889999   99999999999 66


Q ss_pred             CCCCCCCCCC
Q 016290          332 DNAPKWDPPT  341 (392)
Q Consensus       332 ~r~P~w~~~~  341 (392)
                       |+|.|++..
T Consensus       244 -r~p~~~~~~  252 (254)
T 3isa_A          244 -PAAEGHHHH  252 (254)
T ss_dssp             ----------
T ss_pred             -CCCCCCCCC
Confidence             999998753

>1sg4_A 3,2-trans-enoyl-COA isomerase, mitochondrial; crotonase fold; HET: CO8; 1.30A {Homo sapiens} SCOP: c.14.1.3 PDB: 1xx4_A

Probab=100.00  E-value=2.8e-54  Score=408.71  Aligned_cols=249  Identities=16%  Similarity=0.182  Sum_probs=219.7

Q ss_pred             cEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcC-CCccccCCCchhhccCCCCchhHHHH
Q 016290           13 VVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGV-GRAFSAGGDLKMFYDGRNSKDSCLEV   91 (392)
Q Consensus        13 ~V~~~~~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~-G~~FcaG~Dl~~l~~~~~~~~~~~~~   91 (392)
                      .|.++.+++|++||||||+ +|+||.+|+.+|.++|+.++.|+++++|||+|. |++||+|+|++++...  .......+
T Consensus         6 ~v~~~~~~~v~~itlnrp~-~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~~g~~F~aG~Dl~~~~~~--~~~~~~~~   82 (260)
T 1sg4_A            6 LVEPDAGAGVAVMKFKNPP-VNSLSLEFLTELVISLEKLENDKSFRGVILTSDRPGVFSAGLDLTEMCGR--SPAHYAGY   82 (260)
T ss_dssp             EEEEETTTTEEEEEECCTT-TTEECHHHHHHHHHHHHHHHHCTTCCEEEEEESSTEESCCEECGGGGSSC--CHHHHHHH
T ss_pred             EEEEEecCCEEEEEECCCC-CCCCCHHHHHHHHHHHHHHHhCCCceEEEEEcCCCCceEcCcCHHHHhcc--CHHHHHHH
Confidence            3566667999999999997 699999999999999999999999999999999 6999999999988642  12223455


Q ss_pred             HHHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEe--CCeeeeccccccCccCCchhHHHHhhcch-HHHHH
Q 016290           92 VYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVT--EKTVFSTPEASIGFHTDCGFSFIHSRLPG-HLGEF  168 (392)
Q Consensus        92 ~~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riat--e~a~f~~PE~~iGl~P~~G~s~~L~rl~G-~~a~~  168 (392)
                      +...++++..|.++|||+||+|||+|+|||++|+++||+|||+  ++++|++||+++|++|++|++++|+|++| ..+++
T Consensus        83 ~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~  162 (260)
T 1sg4_A           83 WKAVQELWLRLYQSNLVLVSAINGACPAGGCLVALTCDYRILADNPRYCIGLNETQLGIIAPFWLKDTLENTIGHRAAER  162 (260)
T ss_dssp             HHHHHHHHHHHHTCSSEEEEEECEEBCHHHHHHHTTSSEEEEECCTTCCBSCCGGGGTCCCCHHHHHHHHHHHCHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCCEEEEECCeeehHHHHHHHhCCEEEEecCCCCEEeCchhhhCCCCchhHHHHHHHHhCHHHHHH
Confidence            6667788899999999999999999999999999999999999  89999999999999999999999999999 89999


Q ss_pred             HhhcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHhCcCCH
Q 016290          169 LALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKETV  248 (392)
Q Consensus       169 L~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~  248 (392)
                      |++||++++|+||+++||||++||++++.+.+.++                                             
T Consensus       163 llltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~---------------------------------------------  197 (260)
T 1sg4_A          163 ALQLGLLFPPAEALQVGIVDQVVPEEQVQSTALSA---------------------------------------------  197 (260)
T ss_dssp             HHHHTCCBCHHHHHHHTSSSEEECGGGHHHHHHHH---------------------------------------------
T ss_pred             HHHcCCcCCHHHHHHcCCCCEecCHHHHHHHHHHH---------------------------------------------
Confidence            99999999999999999999999988877544433                                             


Q ss_pred             HHHHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHH
Q 016290          249 AEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGIRALT  328 (392)
Q Consensus       249 eei~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eGv~a~l  328 (392)
                                            +++|++.||.+++.+|++++.....++++++..|...+..++.+   +|++||+++|+
T Consensus       198 ----------------------a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~s---~d~~eg~~af~  252 (260)
T 1sg4_A          198 ----------------------IAQWMAIPDHARQLTKAMMRKATASRLVTQRDADVQNFVSFISK---DSIQKSLQMYL  252 (260)
T ss_dssp             ----------------------HHHHHTSCHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHTS---HHHHHHHTC--
T ss_pred             ----------------------HHHHHhCCHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHhCC---HHHHHHHHHHH
Confidence                                  78999999999999999999988888999999999999999999   99999999999


Q ss_pred             hccCCCCC
Q 016290          329 IEKDNAPK  336 (392)
Q Consensus       329 ~dK~r~P~  336 (392)
                       +| |+|+
T Consensus       253 -ek-r~~~  258 (260)
T 1sg4_A          253 -ER-LKEE  258 (260)
T ss_dssp             --------
T ss_pred             -Hh-hccc
Confidence             66 7775

>3h0u_A Putative enoyl-COA hydratase; structural genomics, isomerase, PSI-2, protein structure initiative; 1.50A {Streptomyces avermitilis}

Probab=100.00  E-value=2.6e-54  Score=414.48  Aligned_cols=250  Identities=16%  Similarity=0.189  Sum_probs=223.3

Q ss_pred             CCCCCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCC-CccccCCCchhhccCCCCch
Q 016290            8 NPDEQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVG-RAFSAGGDLKMFYDGRNSKD   86 (392)
Q Consensus         8 ~~~~~~V~~~~~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G-~~FcaG~Dl~~l~~~~~~~~   86 (392)
                      +++++.|.++++++|++||||||+ +|+||.+|+.+|.++|+.++.|++||+|||||+| ++||+|+|++++........
T Consensus         4 ~~~~~~v~~~~~~~Va~itlnrP~-~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~G~~ff~~G~Dl~~~~~~~~~~~   82 (289)
T 3h0u_A            4 TASYETIKARLDGTVLSATFNAPP-MNLIGPEVVRDLVALLEELAHPTAPRVVIFDSADADFFFPHVDMTKVPEYTAEAA   82 (289)
T ss_dssp             CCCCSSEEEEEETTEEEEEECCTT-TCCBCHHHHHHHHHHHHHTTSTTSCSEEEEEECSSSEEECSBCTTCHHHHHHHHH
T ss_pred             CCCCCeEEEEEECCEEEEEECCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCceeCCcCHHHHhhcCcchh
Confidence            456788999999999999999998 7999999999999999999999999999999999 55667779998864211000


Q ss_pred             h-HHHHHHHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCC-eeeeccccccCccCCchhHHHHhhcch-
Q 016290           87 S-CLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEK-TVFSTPEASIGFHTDCGFSFIHSRLPG-  163 (392)
Q Consensus        87 ~-~~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~-a~f~~PE~~iGl~P~~G~s~~L~rl~G-  163 (392)
                      . ...++...++++..|.++|||+||+|||+|+|||++|+++||+|||+++ ++|++||+++|++|++|++++|+|++| 
T Consensus        83 ~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~~a~f~~pe~~lGl~p~~g~~~~L~r~vG~  162 (289)
T 3h0u_A           83 KAGGPGDASLGMLFRKLSQLPAVTIAKLRGRARGAGSEFLLACDMRFASRENAILGQPEVGIGAPPGAGAIQHLTRLLGR  162 (289)
T ss_dssp             TTSSTTCCSHHHHHHHHHTCSSEEEEEECSEEETHHHHHHHHSSEEEEETTTCEEECTHHHHTSCCCSSHHHHHHHHHCH
T ss_pred             hhHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehhhHHHHHhCCEEEEeCCCcEEeCchhhcCCCCCccHHHHHHHHhCH
Confidence            0 0023344567888999999999999999999999999999999999998 999999999999999999999999999 


Q ss_pred             HHHHHHhhcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHh
Q 016290          164 HLGEFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECF  243 (392)
Q Consensus       164 ~~a~~L~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f  243 (392)
                      .++++|+|||++++|+||+++||||++||++++.+.+.+                                         
T Consensus       163 ~~A~ellltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~-----------------------------------------  201 (289)
T 3h0u_A          163 GRALEAVLTSSDFDADLAERYGWVNRAVPDAELDEFVAG-----------------------------------------  201 (289)
T ss_dssp             HHHHHHHHHCCCEEHHHHHHHTSSSEEECHHHHHHHHHH-----------------------------------------
T ss_pred             HHHHHHHHcCCCCCHHHHHHCCCccEecCHHHHHHHHHH-----------------------------------------
Confidence            999999999999999999999999999998877654443                                         


Q ss_pred             CcCCHHHHHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHcCCccHHHHH
Q 016290          244 SKETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEG  323 (392)
Q Consensus       244 ~~~~~eei~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eG  323 (392)
                                                ++++|++.||.+++.+|++++.... +++++++.|...+..++.+   +|++||
T Consensus       202 --------------------------lA~~la~~~p~a~~~~K~~l~~~~~-~l~~~l~~e~~~~~~~~~s---~d~~eg  251 (289)
T 3h0u_A          202 --------------------------IAARMSGFPRDALIAAKSAINAISL-PAPAEVRADAALFQQLVRG---EKVQQR  251 (289)
T ss_dssp             --------------------------HHHHHHTSCHHHHHHHHHHHHHHHS-CCHHHHHHHHHHHHHHTTS---HHHHHH
T ss_pred             --------------------------HHHHHHhCCHHHHHHHHHHHHhhcc-cHHHHHHHHHHHHHHHhCC---HHHHHH
Confidence                                      3789999999999999999999887 8999999999999999999   999999


Q ss_pred             HHHHHhc
Q 016290          324 IRALTIE  330 (392)
Q Consensus       324 v~a~l~d  330 (392)
                      ++||+ +
T Consensus       252 i~AFl-e  257 (289)
T 3h0u_A          252 TAELF-K  257 (289)
T ss_dssp             HHHHH-H
T ss_pred             HHHHh-C
Confidence            99999 5

>2q35_A CURF; crotonase, lyase; 1.65A {Lyngbya majuscula} PDB: 2q34_A 2q2x_A

Probab=100.00  E-value=9.5e-54  Score=401.17  Aligned_cols=239  Identities=22%  Similarity=0.281  Sum_probs=216.7

Q ss_pred             cEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhHHHHH
Q 016290           13 VVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVV   92 (392)
Q Consensus        13 ~V~~~~~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~~~~   92 (392)
                      -++++.+++|++||||||+++|+||.+|+.+|.++++.++.|+++++|||||.|++||+|+|++++........      
T Consensus         4 ~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~------   77 (243)
T 2q35_A            4 VQLTELGNGVVQITMKDESSRNGFSPSIVEGLRHCFSVVAQNQQYKVVILTGYGNYFSSGASKEFLIRKTRGEV------   77 (243)
T ss_dssp             EEEEEEETTEEEEEECCGGGTSBSCHHHHHHHHHHHHHHHHCTTCCEEEEECBTTEEECBSCHHHHHHHHTTCC------
T ss_pred             eEEEEeeCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCeeCCCChHHHhhccchhh------
Confidence            35678899999999999999999999999999999999999999999999999999999999998754211110      


Q ss_pred             HHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcch-HHHHHHhh
Q 016290           93 YRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HLGEFLAL  171 (392)
Q Consensus        93 ~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G-~~a~~L~l  171 (392)
                       ..++++..|.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++| .++++|++
T Consensus        78 -~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~l  156 (243)
T 2q35_A           78 -EVLDLSGLILDCEIPIIAAMQGHSFGGGLLLGLYADFVVFSQESVYATNFMKYGFTPVGATSLILREKLGSELAQEMIY  156 (243)
T ss_dssp             -CCCCCHHHHHTCCSCEEEEECSEEETHHHHHHHTSSEEEEESSSEEECCHHHHTSCCCSSHHHHHHHHHCHHHHHHHHH
T ss_pred             -HHHHHHHHHHhCCCCEEEEEcCccccchHHHHHhCCEEEEeCCCEEECCccccCCCCcchHHHHHHHHhCHHHHHHHHH
Confidence             1145677899999999999999999999999999999999999999999999999999999999999999 99999999


Q ss_pred             cCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHhCcCCHHHH
Q 016290          172 TGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKETVAEI  251 (392)
Q Consensus       172 tG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~eei  251 (392)
                      ||++++|+||+++||||++||++++.+.+.+                                                 
T Consensus       157 tg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~-------------------------------------------------  187 (243)
T 2q35_A          157 TGENYRGKELAERGIPFPVVSRQDVLNYAQQ-------------------------------------------------  187 (243)
T ss_dssp             HCCCEEHHHHHHTTCSSCEECHHHHHHHHHH-------------------------------------------------
T ss_pred             cCCCCCHHHHHHcCCCCEecChhHHHHHHHH-------------------------------------------------
Confidence            9999999999999999999998776654333                                                 


Q ss_pred             HHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHH
Q 016290          252 IKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGIRALT  328 (392)
Q Consensus       252 ~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eGv~a~l  328 (392)
                                        ++++|++.||.+++.+|+++++....++++++..|...+..++.+   +|++||+++++
T Consensus       188 ------------------~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~s---~d~~eg~~a~~  243 (243)
T 2q35_A          188 ------------------LGQKIAKSPRLSLVALKQHLSADIKAKFPEAIKKELEIHQVTFNQ---PEIASRIQQEF  243 (243)
T ss_dssp             ------------------HHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS---TTHHHHHHTTC
T ss_pred             ------------------HHHHHHhCCHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHhCC---HHHHHHHhhcC
Confidence                              378999999999999999999988888999999999999999999   99999999873

>1pjh_A Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral fold, inter-trimer contacts; 2.10A {Saccharomyces cerevisiae} SCOP: c.14.1.3 PDB: 1hno_A 1k39_A* 1hnu_A

Probab=100.00  E-value=1.7e-52  Score=400.59  Aligned_cols=247  Identities=14%  Similarity=0.164  Sum_probs=208.5

Q ss_pred             CCCCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCC-C---
Q 016290            9 PDEQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRN-S---   84 (392)
Q Consensus         9 ~~~~~V~~~~~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~-~---   84 (392)
                      |+++.|.++++++|++||||||+++|+||.+|+.+|.++|+.++.|++|++|||||.|++||+|+|++++..... .   
T Consensus         6 m~~~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~   85 (280)
T 1pjh_A            6 RQNEKISYRIEGPFFIIHLINPDNLNALEGEDYIYLGELLELADRNRDVYFTIIQSSGRFFSSGADFKGIAKAQGDDTNK   85 (280)
T ss_dssp             CCBTTEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEECBTTBSBCCBCHHHHHC-------C
T ss_pred             ccCCceEEEEECCEEEEEECCCcccCCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCccCCcCHHHHhhcccccccc
Confidence            456789999999999999999999999999999999999999999999999999999999999999998754211 0   


Q ss_pred             -chh---H-HHHHHHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEe-CCeeeeccccccCccCCchhHHHH
Q 016290           85 -KDS---C-LEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVT-EKTVFSTPEASIGFHTDCGFSFIH  158 (392)
Q Consensus        85 -~~~---~-~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riat-e~a~f~~PE~~iGl~P~~G~s~~L  158 (392)
                       ...   + ..++...+.++..|.++||||||+|||+|+|||++|+++||+|||+ ++++|++||+++|++|++|++++|
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~~ia~~~~a~f~~pe~~lGl~p~~g~~~~l  165 (280)
T 1pjh_A           86 YPSETSKWVSNFVARNVYVTDAFIKHSKVLICCLNGPAIGLSAALVALCDIVYSINDKVYLLYPFANLGLITEGGTTVSL  165 (280)
T ss_dssp             CSSHHHHHHHHTHHHHHHHHHHHHHCCSEEEEEECSCEEHHHHHHHHHSSEEEESSTTCEEECCHHHHTCCCCTTHHHHH
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHhCCCCEEEEECCeeeeHHHHHHHHCCEEEEeCCCCEEeCchhhcCCCCCccHHHHH
Confidence             111   1 1233344678889999999999999999999999999999999999 999999999999999999999999


Q ss_pred             hhcch-HHHHHHhhcCCcccHHHHHHcCccceecCCC-----ChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhH
Q 016290          159 SRLPG-HLGEFLALTGARLNGKELVAAGLATHFVPSE-----KLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSV  232 (392)
Q Consensus       159 ~rl~G-~~a~~L~ltG~~l~a~eA~~~GLv~~vv~~~-----~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  232 (392)
                      +|++| .++++|++||++++|+||+++||||++||++     ++.+.+.                               
T Consensus       166 ~r~vG~~~A~~llltg~~~~a~eA~~~GLv~~vv~~~~~~~~~l~~~a~-------------------------------  214 (280)
T 1pjh_A          166 PLKFGTNTTYECLMFNKPFKYDIMCENGFISKNFNMPSSNAEAFNAKVL-------------------------------  214 (280)
T ss_dssp             HHHHCHHHHHHHHHTTCCEEHHHHHHTTCCSEECCCCTTCHHHHHHHHH-------------------------------
T ss_pred             HHHhCHHHHHHHHHhCCCCCHHHHHHCCCcceeeCCccccHHHHHHHHH-------------------------------
Confidence            99999 9999999999999999999999999999986     3332111                               


Q ss_pred             HHHHHHHHHHhCcCCHHHHHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHH
Q 016290          233 LNKQSIIDECFSKETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINIL  312 (392)
Q Consensus       233 ~~~~~~i~~~f~~~~~eei~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~  312 (392)
                                                         .+++++|++.||.+++.+|++++......++.            .
T Consensus       215 -----------------------------------~~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~------------~  247 (280)
T 1pjh_A          215 -----------------------------------EELREKVKGLYLPSCLGMKKLLKSNHIDAFNK------------A  247 (280)
T ss_dssp             -----------------------------------HHHHHHHTTCCHHHHHHHHHHHHTTTHHHHHH------------H
T ss_pred             -----------------------------------HHHHHHHHcCCHHHHHHHHHHHHHhHHHHHHH------------h
Confidence                                               13478999999999999999999765433332            2


Q ss_pred             HcCCccHHHHHHHHHHhccCCCC-CCC
Q 016290          313 RAIISADIYEGIRALTIEKDNAP-KWD  338 (392)
Q Consensus       313 ~~~~~~d~~eGv~a~l~dK~r~P-~w~  338 (392)
                      .+   +|++||+++|+ +| |.| .|.
T Consensus       248 ~~---~d~~e~~~af~-~k-r~~e~~~  269 (280)
T 1pjh_A          248 NS---VEVNESLKYWV-DG-EPLKRFR  269 (280)
T ss_dssp             HH---HHHHHHHHHHH-HT-HHHHHHT
T ss_pred             hh---HHHHHHHHHHh-CC-ccHHHHH
Confidence            35   78888888887 55 566 565

>2j5g_A ALR4455 protein; enzyme evolution, C-C bond hydrolase, hydrolase, lyase, crotonase, biocatalysis, beta-diketone; 1.46A {Anabaena SP} PDB: 2j5s_A* 2j5g_D

Probab=100.00  E-value=3e-51  Score=388.12  Aligned_cols=240  Identities=15%  Similarity=0.192  Sum_probs=212.1

Q ss_pred             CCCCCcEEEEEeC-CEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCch
Q 016290            8 NPDEQVVLGEEIG-NVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKD   86 (392)
Q Consensus         8 ~~~~~~V~~~~~~-~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~   86 (392)
                      ...+..|.+++++ +|++||||||++.|+||.+|+.+|.++|+.++.|++|++|||+|.|++||+|+|++++.... ...
T Consensus        19 ~~~~~~i~~~~~~~~Va~ItLnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~-~~~   97 (263)
T 2j5g_A           19 FTKYENLHFHRDENGILEVRMHTNGSSLVFTGKTHREFPDAFYDISRDRDNRVVILTGSGDAWMAEIDFPSLGDVT-NPR   97 (263)
T ss_dssp             GGSCTTEEEEECTTCEEEEEECBTTBSCEECHHHHHHHHHHHHHHHHCTTCCEEEEECBTTEEECEECSGGGCCTT-SHH
T ss_pred             cCCCCeEEEEEcCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCCCCcccCcCHHHHhccC-CHH
Confidence            3445679999999 99999999999999999999999999999999999999999999999999999999986421 122


Q ss_pred             hHHHHHHHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeec-cccccCccCCchhHHHHhhcch-H
Q 016290           87 SCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFST-PEASIGFHTDCGFSFIHSRLPG-H  164 (392)
Q Consensus        87 ~~~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~-PE~~iGl~P~~G~s~~L~rl~G-~  164 (392)
                      ....++....+++..|.++|||+||+|||+|+ ||++|+++||+|||+++++|++ ||+++|++|++|++++|+|++| .
T Consensus        98 ~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~-GG~~LalacD~ria~~~a~f~~~pe~~lGl~p~~g~~~~L~r~vG~~  176 (263)
T 2j5g_A           98 EWDKTYWEGKKVLQNLLDIEVPVISAVNGAAL-LHSEYILTTDIILASENTVFQDMPHLNAGIVPGDGVHILWPLALGLY  176 (263)
T ss_dssp             HHHHHHHHHHHHHHHHHTCCSCEEEEECSEEC-SCGGGGGGCSEEEEETTCEECCCHHHHHTCCCCSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCEEEEECCcch-HHHHHHHhCCEEEEcCCCEEecCcccccccCCCccHHHHHHHHcCHH
Confidence            22345555667888999999999999999999 6999999999999999999999 9999999999999999999999 9


Q ss_pred             HHHHHhhcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHhC
Q 016290          165 LGEFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFS  244 (392)
Q Consensus       165 ~a~~L~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~  244 (392)
                      ++++|++||++++|+||+++||||++||++++.+.+.++                                         
T Consensus       177 ~A~~llltG~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~-----------------------------------------  215 (263)
T 2j5g_A          177 RGRYFLFTQEKLTAQQAYELNVVHEVLPQSKLMERAWEI-----------------------------------------  215 (263)
T ss_dssp             HHHHHHHTTCCEEHHHHHHTTSCSEEECGGGHHHHHHHH-----------------------------------------
T ss_pred             HHHHHHHcCCCCCHHHHHHCCCccEecChHHHHHHHHHH-----------------------------------------
Confidence            999999999999999999999999999998877644443                                         


Q ss_pred             cCCHHHHHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHcCCccHHHHHH
Q 016290          245 KETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGI  324 (392)
Q Consensus       245 ~~~~eei~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eGv  324 (392)
                                                +++|++.||.+++.+|++++.....++++++..              +...|||
T Consensus       216 --------------------------a~~la~~~~~a~~~~K~~l~~~~~~~l~~~l~~--------------e~~~eg~  255 (263)
T 2j5g_A          216 --------------------------ARTLAKQPTLNLRYTRVALTQRLKRLVNEGIGY--------------GLALEGI  255 (263)
T ss_dssp             --------------------------HHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHH
T ss_pred             --------------------------HHHHHhCCHHHHHHHHHHHHhhhhccHHHHHHH--------------HHHHhhH
Confidence                                      789999999999999999998877666666554              4556999


Q ss_pred             HHHHhcc
Q 016290          325 RALTIEK  331 (392)
Q Consensus       325 ~a~l~dK  331 (392)
                      +||+ .|
T Consensus       256 ~af~-~~  261 (263)
T 2j5g_A          256 TATD-LR  261 (263)
T ss_dssp             HHHH-TT
T ss_pred             HHHH-hc
Confidence            9999 45

>3njd_A Enoyl-COA hydratase; ssgcid, mycobacerium smegmatis, structu genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium smegmatis} PDB: 3njb_A

Probab=100.00  E-value=2.9e-51  Score=400.88  Aligned_cols=262  Identities=19%  Similarity=0.236  Sum_probs=212.1

Q ss_pred             CCCCCCCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCc
Q 016290            6 VKNPDEQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSK   85 (392)
Q Consensus         6 ~~~~~~~~V~~~~~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~   85 (392)
                      +..+.++.|+++++++|++||||||+++|+||.+|+.+|.++|+.++.|++|++|||+|.|++||+|+|++++.......
T Consensus        29 ~~~~~~~~i~~e~~~~Va~ItLnrP~~~NAl~~~m~~eL~~al~~~~~d~~vrvvVltG~G~~FcaG~Dl~~~~~~~~~~  108 (333)
T 3njd_A           29 VDFDNLKTMTYEVTDRVARITFNRPEKGNAIVADTPLELSALVERADLDPDVHVILVSGRGEGFCAGFDLSAYAEGSSSA  108 (333)
T ss_dssp             CCTTSCSSEEEEEETTEEEEEECCGGGTTCBCTHHHHHHHHHHHHHHHCTTCCEEEEEESTTSSBCCBC-----------
T ss_pred             CCCCCCCeEEEEEECCEEEEEeCCCCccCCCCHHHHHHHHHHHHHHhhCCCcEEEEEECCCCceecCcCHHHHhhccccc
Confidence            34566788999999999999999999999999999999999999999999999999999999999999999986522110


Q ss_pred             h----------------------------hHHHHHHHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCe
Q 016290           86 D----------------------------SCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKT  137 (392)
Q Consensus        86 ~----------------------------~~~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a  137 (392)
                      .                            ....++...++++..|.+++|||||+|||+|+|||++|+++||+|||++++
T Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~rias~~a  188 (333)
T 3njd_A          109 GGGSPYEGTVLSGKTQALNHLPDEPWDPMVDYQMMSRFVRGFASLMHCDKPTVVKIHGYCVAGGTDIALHADQVIAAADA  188 (333)
T ss_dssp             ----CCTTSTTCHHHHHHTTCSSSCCCHHHHHHHHHHHHHHHTHHHHSSSCEEEEECSEEETHHHHHHTTSSEEEECTTC
T ss_pred             ccccccccccccccccccccccccccchhhHHHHHHHHHHHHHHHHhCCCCEEEEECCEEeHHHHHHHHhCCEEEECCCC
Confidence            0                            112455666778889999999999999999999999999999999999999


Q ss_pred             eeeccccccCccCCchhHHHHhhcch-HHHHHHhhcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHH
Q 016290          138 VFSTPEASIGFHTDCGFSFIHSRLPG-HLGEFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKS  216 (392)
Q Consensus       138 ~f~~PE~~iGl~P~~G~s~~L~rl~G-~~a~~L~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~  216 (392)
                      +|++||+++|++|++|   +|+|++| .++++|+|||++++|+||+++||||++||++++.+.+.++             
T Consensus       189 ~f~~pe~~lG~~P~~g---~l~~~vG~~~A~ellltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~l-------------  252 (333)
T 3njd_A          189 KIGYPPMRVWGVPAAG---LWAHRLGDQRAKRLLFTGDCITGAQAAEWGLAVEAPDPADLDARTERL-------------  252 (333)
T ss_dssp             EEECGGGGTTCCCTTC---CHHHHHCHHHHHHHHTTCCEEEHHHHHHTTSSSBCCCGGGHHHHHHHH-------------
T ss_pred             eeechhhceeccCHHH---HHHHHHHHHHHHHHHhcCCCCCHHHHHHCCCccEecChHHHHHHHHHH-------------
Confidence            9999999999999876   4789999 9999999999999999999999999999998887655444             


Q ss_pred             HHHHhhcccCCChhhHHHHHHHHHHHhCcCCHHHHHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhh-c
Q 016290          217 AIEEFSEDVQLDGQSVLNKQSIIDECFSKETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGRE-Q  295 (392)
Q Consensus       217 ~l~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~eei~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~-~  295 (392)
                                                                            +++|++.||.+++.+|+++++... .
T Consensus       253 ------------------------------------------------------A~~ia~~~~~al~~~K~~l~~~~~~~  278 (333)
T 3njd_A          253 ------------------------------------------------------VERIAAMPVNQLIMAKLACNTALLNQ  278 (333)
T ss_dssp             ------------------------------------------------------HHHHHTSCHHHHHHHHHHHHHHHHTT
T ss_pred             ------------------------------------------------------HHHHHcCCHHHHHHHHHHHHHHHHhc
Confidence                                                                  789999999999999999998865 3


Q ss_pred             CHHHH--HHHHHHHHH------HHHHcCCccHHHHHHHHHHhccCCCCCCCCCCC
Q 016290          296 SLAEC--LKKEFRLTI------NILRAIISADIYEGIRALTIEKDNAPKWDPPTL  342 (392)
Q Consensus       296 ~l~~~--l~~E~~~~~------~~~~~~~~~d~~eGv~a~l~dK~r~P~w~~~~l  342 (392)
                      .+...  +...+....      ..+..   ....+|+++++ +| |+|.|.+.+.
T Consensus       279 ~~~~~~~~~~~~~~~~~~~~e~~~f~~---~~~~~g~~a~~-ek-R~~~f~~~~~  328 (333)
T 3njd_A          279 GVATSQMVSTVFDGIARHTPEGHAFVA---TAREHGFREAV-RR-RDEPMGDHGR  328 (333)
T ss_dssp             THHHHHHHHHHHHHHHTTSHHHHHHHH---HHHHHCHHHHH-HH-HHGGGTCCTT
T ss_pred             chhHHHHHHHHHHHHHhcChHHHHHHH---HhhhHHHHHHH-Hh-cCCCCCCccc
Confidence            45443  211111111      11111   23379999999 66 8999987543

>3r6h_A Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium marinum, structura genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium marinum M} PDB: 4hc8_A*

Probab=100.00  E-value=7.3e-51  Score=379.29  Aligned_cols=226  Identities=15%  Similarity=0.165  Sum_probs=205.8

Q ss_pred             CcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhHHHH
Q 016290           12 QVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEV   91 (392)
Q Consensus        12 ~~V~~~~~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~~~   91 (392)
                      +.|.++.+++|++||||||+ .|+||.+|+.+|.++++.+++| ++|+|||||.|++||+|+|++++....  ......+
T Consensus         5 ~~v~~~~~~~v~~itlnrp~-~Nal~~~~~~~L~~al~~~~~d-~vr~vvltg~g~~F~aG~Dl~~~~~~~--~~~~~~~   80 (233)
T 3r6h_A            5 GPVTYTHDDAIGVIRMDDGK-VNVLGPTMQQALNEAIDAADRD-NVGALVIAGNHRVFSGGFDLKVLTSGE--AKPAIDM   80 (233)
T ss_dssp             CCEEEEEETTEEEEEECCSS-SCCCSHHHHHHHHHHHHHHHHH-TCSEEEEECCSSEEECCSCHHHHC-----CHHHHHH
T ss_pred             CceEEEEECCEEEEEECCCC-CCCCCHHHHHHHHHHHHHHHhC-CCeEEEEECCCCCccCCcChHHHhccC--hHHHHHH
Confidence            46999999999999999995 6999999999999999999987 589999999999999999999987532  2223567


Q ss_pred             HHHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcch-HHHHHHh
Q 016290           92 VYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HLGEFLA  170 (392)
Q Consensus        92 ~~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G-~~a~~L~  170 (392)
                      +...++++..|.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|+.|++++|++++| ..+++|+
T Consensus        81 ~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~~~~~g~~~l~~~~g~~~a~~l~  160 (233)
T 3r6h_A           81 LRGGFELSYRLLSYPKPVVIACTGHAIAMGAFLLCSGDHRVAAHAYNVQANEVAIGMTIPYAAMEVLKLRLTPSAYQQAA  160 (233)
T ss_dssp             HHHHHHHHHHHHTCSSCEEEEECSEEETHHHHHHTTSSEEEECTTCCEECCGGGGTCCCCHHHHHHHHHHSCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCEEEEECCcchHHHHHHHHhCCEEEEeCCcEEECchhhhCCCCCccHHHHHHHHhCHHHHHHHH
Confidence            777888999999999999999999999999999999999999999999999999999999999999999999 9999999


Q ss_pred             hcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHhCcCCHHH
Q 016290          171 LTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKETVAE  250 (392)
Q Consensus       171 ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~ee  250 (392)
                      +||++++|+||+++||||++||++++.+.+.++                                               
T Consensus       161 ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~-----------------------------------------------  193 (233)
T 3r6h_A          161 GLAKTFFGETALAAGFIDEISLPEVVLSRAEEA-----------------------------------------------  193 (233)
T ss_dssp             HSCCEECHHHHHHHTSCSEECCGGGHHHHHHHH-----------------------------------------------
T ss_pred             HcCCcCCHHHHHHcCCCcEeeCHHHHHHHHHHH-----------------------------------------------
Confidence            999999999999999999999998887644443                                               


Q ss_pred             HHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHH
Q 016290          251 IIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLT  308 (392)
Q Consensus       251 i~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~  308 (392)
                                          +++|++.||.+++.+|+++++....+++++++.|.+.+
T Consensus       194 --------------------a~~la~~~~~a~~~~K~~l~~~~~~~l~~~l~~e~~~f  231 (233)
T 3r6h_A          194 --------------------AREFAGLNQQAHNATKLRARAEALKAIRAGIDGIEAEF  231 (233)
T ss_dssp             --------------------HHHHHTSCHHHHHHHHHHTTHHHHHHHHHHHHTSHHHH
T ss_pred             --------------------HHHHHcCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Confidence                                78999999999999999999998889999999887654

>3m6n_A RPFF protein; enoyl-COA hydratase, lyase; 1.80A {Xanthomonas campestris PV} PDB: 3m6m_A

Probab=100.00  E-value=6e-50  Score=387.05  Aligned_cols=249  Identities=16%  Similarity=0.224  Sum_probs=218.1

Q ss_pred             CCcE--EEEEeCCEEEEEEcCCCCC----CCCCHHHHHHHHHHHHHHhh-----CCCceEEEEEcCCCccccCCCchhhc
Q 016290           11 EQVV--LGEEIGNVRLVTLNRPRQL----NVISSKVVSLLAEYLEKWEK-----DDQAKLVIVKGVGRAFSAGGDLKMFY   79 (392)
Q Consensus        11 ~~~V--~~~~~~~v~~itLnrp~~l----Nal~~~m~~~L~~~l~~~~~-----d~~v~~Vvl~g~G~~FcaG~Dl~~l~   79 (392)
                      +..+  .++.+++|++||||||++.    |+||.+|+.+|.++|+.++.     |++|++|||+|.|++||+|+|++++.
T Consensus        29 y~~i~v~~~~~~~V~~itLnrp~k~n~~rpal~~~m~~eL~~al~~~~~d~~~~d~~vr~vVltg~G~~FcaG~Dl~~~~  108 (305)
T 3m6n_A           29 GSTLRIIEEPQRDVYWIHMHADLAINPGRACFSTRLVDDITGYQTNLGQRLNTAGVLAPHVVLASDSDVFNLGGDLALFC  108 (305)
T ss_dssp             CTTEEEEEETTTTEEEEEECTTC-----CCSBCHHHHHHHHHHHHHHHHHHHHHTCSSCEEEEEESSSSSBCCBCHHHHH
T ss_pred             CceEEEEEEEECCEEEEEECCccccCCCCCCCCHHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCeecCcCHHHHH
Confidence            4454  4466899999999999984    49999999999999999987     58999999999999999999999986


Q ss_pred             cCC--CCchhHHHHHHHHHHHHHHH---HhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchh
Q 016290           80 DGR--NSKDSCLEVVYRMYWLCHHI---HTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGF  154 (392)
Q Consensus        80 ~~~--~~~~~~~~~~~~~~~l~~~i---~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~  154 (392)
                      ...  ........++...+..++.+   ..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|+
T Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~g~  188 (305)
T 3m6n_A          109 QLIREGDRARLLDYAQRCVRGVHAFHVGLGARAHSIALVQGNALGGGFEAALSCHTIIAEEGVMMGLPEVLFDLFPGMGA  188 (305)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHHHHHHTGGGTTCEEEEEECSCEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCCSSH
T ss_pred             hccccccHHHHHHHHHHHHHHHHHHHHhcCCCCCEEEEECCEeehHHHHHHHhCCEEEEcCCCEEECchhccCcCCCccH
Confidence            521  11122344555555555555   4689999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhcch-HHHHHHhhcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHH
Q 016290          155 SFIHSRLPG-HLGEFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVL  233 (392)
Q Consensus       155 s~~L~rl~G-~~a~~L~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  233 (392)
                      +++|+|++| .++++|++||++++|+||+++||||+|||++++.+.+.++                              
T Consensus       189 ~~~L~r~vG~~~A~~llltG~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~------------------------------  238 (305)
T 3m6n_A          189 YSFMCQRISAHLAQKIMLEGNLYSAEQLLGMGLVDRVVPRGQGVAAVEQV------------------------------  238 (305)
T ss_dssp             HHHHTTTSCHHHHHHHHHHCCEEEHHHHHHHTSCSEEECTTCHHHHHHHH------------------------------
T ss_pred             HHHHHHHhcHHHHHHHHHcCCCCCHHHHHHCCCCCEecChhHHHHHHHHH------------------------------
Confidence            999999999 9999999999999999999999999999999988655444                              


Q ss_pred             HHHHHHHHHhCcCCHHHHHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHH
Q 016290          234 NKQSIIDECFSKETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILR  313 (392)
Q Consensus       234 ~~~~~i~~~f~~~~~eei~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~  313 (392)
                                                           +++|++ +|.+++.+|++++.....+++++++.|...+..++.
T Consensus       239 -------------------------------------a~~la~-~p~a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~  280 (305)
T 3m6n_A          239 -------------------------------------IRESKR-TPHAWAAMQQVREMTTAVPLEEMMRITEIWVDTAMQ  280 (305)
T ss_dssp             -------------------------------------HHHHTT-CHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHTT
T ss_pred             -------------------------------------HHHHhh-ChHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHc
Confidence                                                 678876 899999999999999999999999999999999999


Q ss_pred             cCCccHHHHHHHHHHhc
Q 016290          314 AIISADIYEGIRALTIE  330 (392)
Q Consensus       314 ~~~~~d~~eGv~a~l~d  330 (392)
                      +   +|....+.+.++.
T Consensus       281 s---~d~~~~~m~~l~~  294 (305)
T 3m6n_A          281 L---GEKSLRTMDRLVR  294 (305)
T ss_dssp             C---CHHHHHHHHHHHH
T ss_pred             C---chHHHHHHHHHHH
Confidence            9   9999888888864

>3ot6_A Enoyl-COA hydratase/isomerase family protein; structural genomics, PSI-2, protein structure initiative; 2.50A {Pseudomonas syringae PV}

Probab=100.00  E-value=9e-50  Score=371.68  Aligned_cols=223  Identities=21%  Similarity=0.215  Sum_probs=203.9

Q ss_pred             CcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhHHHH
Q 016290           12 QVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEV   91 (392)
Q Consensus        12 ~~V~~~~~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~~~   91 (392)
                      +.|.++.+++|++||||||+ .|+||.+|+.+|.++++.++.|  +++|||||.|++||+|+|++++...   ......+
T Consensus         6 ~~v~~~~~~~v~~itlnrp~-~Nal~~~~~~~L~~al~~~~~d--~~~vvltg~g~~F~aG~Dl~~~~~~---~~~~~~~   79 (232)
T 3ot6_A            6 DLVSYHLDDGVATLTLNNGK-VNAISPDVIIAFNAALDQAEKD--RAIVIVTGQPGILSGGYDLKVMTSS---AEAAINL   79 (232)
T ss_dssp             HHEEEEEETTEEEEEECCTT-TTCBCHHHHHHHHHHHHHHHHT--TCEEEEECBTEEEECCBCHHHHHHC---HHHHHHH
T ss_pred             cceEEEEECCEEEEEECCCC-CCCCCHHHHHHHHHHHHHHhcC--CCEEEEECCCCCccCCcCHHHHhhC---hHHHHHH
Confidence            46999999999999999996 6999999999999999999987  4899999999999999999998652   2223567


Q ss_pred             HHHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCC-eeeeccccccCccCCchhHHHHhhcch-HHHHHH
Q 016290           92 VYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEK-TVFSTPEASIGFHTDCGFSFIHSRLPG-HLGEFL  169 (392)
Q Consensus        92 ~~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~-a~f~~PE~~iGl~P~~G~s~~L~rl~G-~~a~~L  169 (392)
                      +...++++..|.++|||+||+|||+|+|||++|+++||+|||+++ ++|++||+++|++|+.|++++|++++| .++++|
T Consensus        80 ~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~~Gl~p~~~g~~~l~~~ig~~~a~~l  159 (232)
T 3ot6_A           80 VAQGSTLARRMLSHPFPIIVACPGHAVAKGAFLLLSADYRIGVAGPFSIGLNEVQIGMTMHHAGIELARDRLRKSAFNRS  159 (232)
T ss_dssp             HHHHHHHHHHHHTCSSCEEEECCEEEETHHHHHHTTSSEEEEECSSCCEECCTTTTTCCCCHHHHHHHHHHSCHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCCEEEEECCEeehHHHHHHHHCCEEEEeCCCcEEECcccccCCCCchhHHHHHHHHhCHHHHHHH
Confidence            777788999999999999999999999999999999999999998 899999999999988888889998888 999999


Q ss_pred             hhcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHhCcCCHH
Q 016290          170 ALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKETVA  249 (392)
Q Consensus       170 ~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~e  249 (392)
                      ++||++++|+||+++||||++||++++.+.+.++                                              
T Consensus       160 ~ltg~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~----------------------------------------------  193 (232)
T 3ot6_A          160 VINAEMFDPEGAMAAGFLDKVVSVEELQGAALAV----------------------------------------------  193 (232)
T ss_dssp             HTSCCEECHHHHHHHTSCSEEECTTTHHHHHHHH----------------------------------------------
T ss_pred             HHcCCccCHHHHHHCCCCCEecCHHHHHHHHHHH----------------------------------------------
Confidence            9999999999999999999999999987655444                                              


Q ss_pred             HHHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHH
Q 016290          250 EIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRL  307 (392)
Q Consensus       250 ei~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~  307 (392)
                                           +++|++.||.+++.+|+++++....+++++++.|.+.
T Consensus       194 ---------------------a~~la~~~~~a~~~~K~~l~~~~~~~l~~~l~~E~~~  230 (232)
T 3ot6_A          194 ---------------------AAQLKKINMNAHKKTKLKVRKGLLDTLDAAIEQDRQH  230 (232)
T ss_dssp             ---------------------HHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ---------------------HHHHHcCCHHHHHHHHHHHHHHhHhHHHHHHHHHHHh
Confidence                                 7899999999999999999999989999999998875

>1szo_A 6-oxocamphor hydrolase; enzyme-product complex; HET: CAX; 1.90A {Rhodococcus SP} SCOP: c.14.1.3 PDB: 1o8u_A

Probab=100.00  E-value=1.7e-49  Score=375.08  Aligned_cols=225  Identities=18%  Similarity=0.251  Sum_probs=201.6

Q ss_pred             CCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhHHH
Q 016290           11 EQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLE   90 (392)
Q Consensus        11 ~~~V~~~~~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~~   90 (392)
                      +..|.++++++|++||||||+++|+||.+|+.+|.++|+.++.|+++++|||||.|++||+|+|++++...  ....+..
T Consensus        15 ~~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~--~~~~~~~   92 (257)
T 1szo_A           15 YENIRLERDGGVLLVTVHTEGKSLVWTSTAHDELAYCFHDIACDRENKVVILTGTGPSFCNEIDFTSFNLG--TPHDWDE   92 (257)
T ss_dssp             CTTEEEEEETTEEEEEECBTTBSCEECHHHHHHHHHHHHHHHHCTTCCEEEEECBTTBSBCEECGGGSCCS--SHHHHHH
T ss_pred             CceEEEEEECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEEcCCCccccCcCchhhhcC--CHHHHHH
Confidence            35799999999999999999999999999999999999999999999999999999999999999987531  1222244


Q ss_pred             HHHHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeec-cccccCccCCchhHHHHhhcch-HHHHH
Q 016290           91 VVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFST-PEASIGFHTDCGFSFIHSRLPG-HLGEF  168 (392)
Q Consensus        91 ~~~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~-PE~~iGl~P~~G~s~~L~rl~G-~~a~~  168 (392)
                      ++...++++..|.++|||+||+|||+|+ ||++|+++||+|||+++++|++ ||+++|++|++|++++|+|++| ..+++
T Consensus        93 ~~~~~~~~~~~l~~~~kPvIAav~G~a~-GG~~LalacD~ria~~~a~f~~~pe~~lGl~p~~g~~~~l~r~vG~~~A~~  171 (257)
T 1szo_A           93 IIFEGQRLLNNLLSIEVPVIAAVNGPVT-NAPEIPVMSDIVLAAESATFQDGPHFPSGIVPGDGAHVVWPHVLGSNRGRY  171 (257)
T ss_dssp             HHHHHHHHHHHHHHCCSCEEEEECSCBC-SSTHHHHTSSEEEEETTCEEECTTSGGGTCCCTTTHHHHHHHHHCHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCcEEEEECCchH-HHHHHHHHCCEEEEeCCCEEecCcccccccCCCccHHHHHHHHcCHHHHHH
Confidence            5555677888999999999999999999 5999999999999999999999 9999999999999999999999 99999


Q ss_pred             HhhcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHhCcCCH
Q 016290          169 LALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKETV  248 (392)
Q Consensus       169 L~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~  248 (392)
                      |++||++++|+||+++||||++||++++.+.+.                                               
T Consensus       172 llltG~~~~A~eA~~~GLv~~vv~~~~l~~~a~-----------------------------------------------  204 (257)
T 1szo_A          172 FLLTGQELDARTALDYGAVNEVLSEQELLPRAW-----------------------------------------------  204 (257)
T ss_dssp             HHHTTCEEEHHHHHHHTSCSEEECHHHHHHHHH-----------------------------------------------
T ss_pred             HHHcCCCCCHHHHHHCCCceEEeChHHHHHHHH-----------------------------------------------
Confidence            999999999999999999999999877655333                                               


Q ss_pred             HHHHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHH
Q 016290          249 AEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEF  305 (392)
Q Consensus       249 eei~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~  305 (392)
                                          +++++|++.||.+++.+|+++++....++++.+..|.
T Consensus       205 --------------------~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~l~~~~  241 (257)
T 1szo_A          205 --------------------ELARGIAEKPLLARRYARKVLTRQLRRVMEADLSLGL  241 (257)
T ss_dssp             --------------------HHHHHHHTSCHHHHHHHHHHHSHHHHHHHHHHHHHHH
T ss_pred             --------------------HHHHHHHhCCHHHHHHHHHHHHhhhhccHHHHHHHHH
Confidence                                3378999999999999999999987777887776654

>3t3w_A Enoyl-COA hydratase; ssgcid, structural genomics, seattle ST genomics center for infectious disease, lyase; 1.80A {Mycobacterium thermoresistibile} PDB: 3ome_A

Probab=100.00  E-value=6.8e-49  Score=375.33  Aligned_cols=248  Identities=19%  Similarity=0.272  Sum_probs=203.7

Q ss_pred             CCCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCch---
Q 016290           10 DEQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKD---   86 (392)
Q Consensus        10 ~~~~V~~~~~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~---   86 (392)
                      .++.|+++++++|++||||||+++|+||.+|+.+|.++|+.++.|+++++|||+|.|++||+|+|++++........   
T Consensus        18 ~~~~v~~~~~~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~G~~F~aG~Dl~~~~~~~~~~~~~~   97 (279)
T 3t3w_A           18 TEMYIDYDVSDRIATITLNRPEAANAQNPELLDELDAAWTRAAEDNDVSVIVLRANGKHFSAGHDLRGGGPVPDKLTLEF   97 (279)
T ss_dssp             -CCSEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEECSSCSBCCBCCC--------CCHHH
T ss_pred             cCCeEEEEEECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCceeeccChHhhhhcccccchHH
Confidence            35689999999999999999999999999999999999999999999999999999999999999999865321111   


Q ss_pred             hHHHHHHHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcch-HH
Q 016290           87 SCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HL  165 (392)
Q Consensus        87 ~~~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G-~~  165 (392)
                      .........+.++..|.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|+ |+.|+..+ +|++| .+
T Consensus        98 ~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl-~~~~~~~~-~~~vG~~~  175 (279)
T 3t3w_A           98 IYAHESRRYLEYSLRWRNVPKPSIAAVQGRCISGGLLLCWPCDLIIAAEDALFSDPVVLMDI-GGVEYHGH-TWELGPRK  175 (279)
T ss_dssp             HHHHHHHHTHHHHHHHHHCSSCEEEEECSEEEGGGHHHHTTSSEEEEETTCEEECCGGGGTC-SSCSSCCH-HHHHCHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCEEEEECCeEhHHHHHHHHhCCEEEecCCCEEeCcHHhcCC-CCchHHHH-HhhcCHHH
Confidence            11222334456788999999999999999999999999999999999999999999999999 44455444 99999 99


Q ss_pred             HHHHhhcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHhCc
Q 016290          166 GEFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSK  245 (392)
Q Consensus       166 a~~L~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~  245 (392)
                      +++|++||++++|+||+++||||++||++++.+.+.++                                          
T Consensus       176 A~~llltG~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~------------------------------------------  213 (279)
T 3t3w_A          176 AKEILFTGRAMTAEEVAQTGMVNRVVPRDRLDAETRAL------------------------------------------  213 (279)
T ss_dssp             HHHHHHHCCCEEHHHHHHHTSCSEEECGGGHHHHHHHH------------------------------------------
T ss_pred             HHHHHHcCCccCHHHHHHCCCCcEeeChHHHHHHHHHH------------------------------------------
Confidence            99999999999999999999999999999887654444                                          


Q ss_pred             CCHHHHHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhh-cCHHHHHHHHHHHHHHHHHcCCccHHHHHH
Q 016290          246 ETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGRE-QSLAECLKKEFRLTINILRAIISADIYEGI  324 (392)
Q Consensus       246 ~~~eei~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~-~~l~~~l~~E~~~~~~~~~~~~~~d~~eGv  324 (392)
                                               +++|++.||.+++.+|+++++... .+++++++.++.       .   .++.|+.
T Consensus       214 -------------------------a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~-------~---~~~~~~~  258 (279)
T 3t3w_A          214 -------------------------AGEIAKMPPFALRQAKRAVNQTLDVQGFYAAIQSVFD-------I---HQTGHGN  258 (279)
T ss_dssp             -------------------------HHHHHTSCHHHHHHHHHHHHHHHHHTTHHHHHHHHHH-------H---HHHHHHH
T ss_pred             -------------------------HHHHHcCCHHHHHHHHHHHHHhhhcccHHHHHHHHhh-------H---HHHHHHH
Confidence                                     789999999999999999998875 478877766554       3   5666776


Q ss_pred             HHHHhccCCCCCCCC
Q 016290          325 RALTIEKDNAPKWDP  339 (392)
Q Consensus       325 ~a~l~dK~r~P~w~~  339 (392)
                       ++.  +...|.++.
T Consensus       259 -~~~--~~~~~~~~~  270 (279)
T 3t3w_A          259 -AMS--VSGWPVLVD  270 (279)
T ss_dssp             -HHH--HTSSCC---
T ss_pred             -HHH--hcCCccccC
Confidence             555  235665553

>2np9_A DPGC; protein inhibitor complex, oxidoreductase; HET: YE1; 2.45A {Streptomyces toyocaensis} PDB: 2pg8_A*

Probab=100.00  E-value=8.1e-49  Score=392.68  Aligned_cols=245  Identities=22%  Similarity=0.257  Sum_probs=203.0

Q ss_pred             CCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcC--------C-CccccCCCchhhccC
Q 016290           11 EQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGV--------G-RAFSAGGDLKMFYDG   81 (392)
Q Consensus        11 ~~~V~~~~~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~--------G-~~FcaG~Dl~~l~~~   81 (392)
                      ++.|.++.+++|++||||||+++|+||.+|+.+|.++|+.++.|++|++|||||.        | ++||+|+||+++...
T Consensus       166 ~~~v~~e~~~gVa~ItLNRP~k~NALs~~m~~eL~~al~~~~~D~~VRvVVLtG~~~~~p~~aG~~~FcAG~DL~~~~~~  245 (440)
T 2np9_A          166 MEAVHLERRDGVARLTMCRDDRLNAEDGQQVDDMETAVDLALLDPGVRVGLLRGGVMSHPRYRGKRVFSAGINLKYLSQG  245 (440)
T ss_dssp             CSSEEEEEETTEEEEEECCTTTTTCBCHHHHHHHHHHHHHHHHCTTCSEEEEEECBCCSTTTTTCBCCBCCBCHHHHHTT
T ss_pred             CceEEEEEECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEEcCCccccccCCCccccCCcchhhhhcc
Confidence            3469999999999999999999999999999999999999999999999999994        7 899999999998653


Q ss_pred             CCCc-hh-HHHHHHHHHHHHHHH------------HhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccC
Q 016290           82 RNSK-DS-CLEVVYRMYWLCHHI------------HTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIG  147 (392)
Q Consensus        82 ~~~~-~~-~~~~~~~~~~l~~~i------------~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iG  147 (392)
                      .... .. ....+.....++..+            .+++|||||+|||+|+|||++|+++||||||+++++|++||+++|
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~pkPvIAAVnG~A~GGG~eLALaCDirIAae~A~Fglpev~lG  325 (440)
T 2np9_A          246 GISLVDFLMRRELGYIHKLVRGVLTNDDRPGWWHSPRIEKPWVAAVDGFAIGGGAQLLLVFDRVLASSDAYFSLPAAKEG  325 (440)
T ss_dssp             CCCTTTTHHHHHHTHHHHHHHCEECCSCSTTTTTCCEECCCEEEEECSEEETHHHHHGGGCSEEEEETTCEEECCCTTTC
T ss_pred             CcchhhhhhHHHHHHHHHHHHHHHhhcccchhhhhhcCCCCEEEEECCcccccchHHHhhCCEEEEcCCCEEECchhccC
Confidence            2111 11 111111123333333            479999999999999999999999999999999999999999999


Q ss_pred             ccCCchhHHHHhhcch-HHHHHHhhcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccC
Q 016290          148 FHTDCGFSFIHSRLPG-HLGEFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQ  226 (392)
Q Consensus       148 l~P~~G~s~~L~rl~G-~~a~~L~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~  226 (392)
                      ++|++| +++|+|++| .++++|+|||++|+|+||+++||||+|||++++.+.+..+                       
T Consensus       326 l~P~~g-~~~L~rlvG~~~A~ellLtG~~i~A~EA~~~GLV~~Vvp~~eL~~~a~~~-----------------------  381 (440)
T 2np9_A          326 IIPGAA-NLRLGRFAGPRVSRQVILEGRRIWAKEPEARLLVDEVVEPDELDAAIERS-----------------------  381 (440)
T ss_dssp             CCCTTH-HHHHHHHHHHHHHHHHHHHCCCEETTSGGGGGTCSEEECHHHHHHHHHHH-----------------------
T ss_pred             cCcchH-HHHHHHHhhHHHHHHHHHcCCCCCHHHHHHCCCCcEecChHHHHHHHHHH-----------------------
Confidence            999887 689999999 9999999999999999999999999999987765433222                       


Q ss_pred             CChhhHHHHHHHHHHHhCcCCHHHHHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHH---HHHHH
Q 016290          227 LDGQSVLNKQSIIDECFSKETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLA---ECLKK  303 (392)
Q Consensus       227 ~~~~~~~~~~~~i~~~f~~~~~eei~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~---~~l~~  303 (392)
                                                                  +++|   ++.+++.+|++++.... +++   +.+..
T Consensus       382 --------------------------------------------A~~l---a~~Av~~~K~~l~~~~~-~~~~~~~~l~~  413 (440)
T 2np9_A          382 --------------------------------------------LTRL---DGDAVLANRRMLNLADE-SPDGFRAYMAE  413 (440)
T ss_dssp             --------------------------------------------HHTT---CSHHHHHHHHHHHHHHS-CHHHHHHHHHH
T ss_pred             --------------------------------------------HHHh---CHHHHHHHHHHHHhhhc-chhHHHHHHHH
Confidence                                                        3333   57899999999998754 443   55666


Q ss_pred             HHHHHHHHHHcCCccHHHHHHHHHHhcc
Q 016290          304 EFRLTINILRAIISADIYEGIRALTIEK  331 (392)
Q Consensus       304 E~~~~~~~~~~~~~~d~~eGv~a~l~dK  331 (392)
                      |...+..++.+   +|++||++||+ +|
T Consensus       414 e~~~~~~~~~s---~D~~Egv~AFl-eK  437 (440)
T 2np9_A          414 FALMQALRLYG---HDVIDKVGRFG-GR  437 (440)
T ss_dssp             HHHHHHHHHTC---HHHHHHHHTCC---
T ss_pred             HHHHHHHHhcC---HHHHHHHHHHH-hC
Confidence            77777788888   99999999999 66

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A*

Probab=100.00  E-value=2.3e-47  Score=406.12  Aligned_cols=270  Identities=18%  Similarity=0.251  Sum_probs=214.8

Q ss_pred             EEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhHHHHHH
Q 016290           14 VLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVY   93 (392)
Q Consensus        14 V~~~~~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~~~~~   93 (392)
                      ..++.+|+|++||||||+ .|+||.+|+.+|.++|++++.|++|++|||||+|++||||+||+++...... ..      
T Consensus        23 ~~~~~~~~Va~itlnrP~-~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aGaDl~~~~~~~~~-~~------   94 (742)
T 3zwc_A           23 EYLRLPHSLAMIRLCNPP-VNAVSPTVIREVRNGLQKAGSDHTVKAIVICGANGNFCAGADIHGFSAFTPG-LA------   94 (742)
T ss_dssp             EEEECSTTEEEEEECCTT-TTCBCHHHHHHHHHHHHHHHTCTTCCEEEEEESTTCSBCCBCSSSCCSSCSC-SH------
T ss_pred             eEEEeeCCEEEEEeCCCc-ccCCCHHHHHHHHHHHHHHhhCCCCeEEEEECCCCccccCcChHhhhccChh-HH------
Confidence            445678999999999997 6999999999999999999999999999999999999999999998653321 11      


Q ss_pred             HHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcch-HHHHHHhhc
Q 016290           94 RMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HLGEFLALT  172 (392)
Q Consensus        94 ~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G-~~a~~L~lt  172 (392)
                       ...++..|.+++||+||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|+|++| ..+++|+||
T Consensus        95 -~~~~~~~i~~~~kPvIAai~G~a~GGG~elalacD~ria~~~a~fg~pev~lGl~Pg~ggt~rL~rlvG~~~A~~l~lt  173 (742)
T 3zwc_A           95 -LGSLVDEIQRYQKPVLAAIQGVALGGGLELALGCHYRIANAKARVGLPEVTLGILPGARGTQLLPRVVGVPVALDLITS  173 (742)
T ss_dssp             -HHHHHHHHHHCSSCEEEEECSEEETHHHHHHHTSSEEEEETTCEEECGGGGGTCCCTTTHHHHHHHHHCHHHHHHHHHH
T ss_pred             -HHHHHHHHHhCCCCEEEEECccchHHHHHHHHhcCEEEEcCCCEEECcccCcccCCCccHHHHHHHhhhHHHHHHHHHc
Confidence             245677899999999999999999999999999999999999999999999999999999999999999 999999999


Q ss_pred             CCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHhCcCCHHHHH
Q 016290          173 GARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKETVAEII  252 (392)
Q Consensus       173 G~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~eei~  252 (392)
                      |++++|+||+++||||+|+|++.+++. .++++          ++.    ..+.. ....     .-.............
T Consensus       174 G~~i~a~eA~~~GLv~~vv~~d~~~~A-~~~A~----------~ia----~~~~~-~~~~-----~~~~~~~~~~~~~~~  232 (742)
T 3zwc_A          174 GKYLSADEALRLGILDAVVKSDPVEEA-IKFAQ----------KII----DKPIE-PRRI-----FNKPVPSLPNMDSVF  232 (742)
T ss_dssp             CCCEEHHHHHHHTSCSEEESSCHHHHH-HHHHH----------HHT----TSCSG-GGCG-----GGSCCCCCTTHHHHH
T ss_pred             CCchhHHHHHHcCCccEecCchhhHHH-HHHHH----------HHh----cCCch-hhhh-----hcccccccchhhhhH
Confidence            999999999999999999998765432 22221          111    11000 0000     000000011111111


Q ss_pred             HHHHHhhccCCcccHHHHHHHHh--hcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHhc
Q 016290          253 KSFEAEAGKEGNGWIGPVLKGLK--KSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGIRALTIE  330 (392)
Q Consensus       253 ~~l~~~~~~~~~~~a~~~~~~l~--~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eGv~a~l~d  330 (392)
                      ...               ..++.  ...+.+...+++.++.+...+++++++.|.+.+..++.+   ++.++++++|+.+
T Consensus       233 ~~~---------------~~~~~k~~~~~~A~~~~~~~v~~~~~~~~~~gl~~E~~~F~~l~~s---~~~k~~~~aFf~~  294 (742)
T 3zwc_A          233 AEA---------------IAKVRKQYPGVLAPETCVRSIQASVKHPYEVGIKEEEKLFMYLRAS---GQAKALQYAFFAE  294 (742)
T ss_dssp             HHH---------------HHHHHHHSTTCHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTS---HHHHHHHHHHHHH
T ss_pred             HHH---------------HHHHhhhccchhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhcCC---HHHHHHHHHHHHH
Confidence            111               11222  234568899999999999999999999999999999999   9999999999954


Q ss_pred             c
Q 016290          331 K  331 (392)
Q Consensus       331 K  331 (392)
                      +
T Consensus       295 r  295 (742)
T 3zwc_A          295 K  295 (742)
T ss_dssp             H
T ss_pred             h
Confidence            3

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}

Probab=100.00  E-value=1.2e-47  Score=409.68  Aligned_cols=291  Identities=17%  Similarity=0.185  Sum_probs=226.4

Q ss_pred             CCCcEEEE-EeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCC-ccccCCCchhhccCCCC-ch
Q 016290           10 DEQVVLGE-EIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGR-AFSAGGDLKMFYDGRNS-KD   86 (392)
Q Consensus        10 ~~~~V~~~-~~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~-~FcaG~Dl~~l~~~~~~-~~   86 (392)
                      ..+.|.++ .+++|++|||||| ++|+||.+|+.+|.++|+.++.|++|++||||| |+ +||+|+||+++...... ..
T Consensus         5 ~~~~i~~~~~~~~va~itlnrp-~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg-g~~~F~aG~Dl~~~~~~~~~~~~   82 (725)
T 2wtb_A            5 TKGKTVMEVGGDGVAVITLINP-PVNSLSFDVLYNLKSNYEEALSRNDVKAIVITG-AKGRFSGGFDISGFGEMQKGNVK   82 (725)
T ss_dssp             --CEEEEEECTTSEEEEEEECT-TTTCCCHHHHHHHHHHHHHHTTCTTCCEEEEEE-SSSCCBCSSCC------------
T ss_pred             cCCeEEEEEeeCCEEEEEECCC-CCCCCCHHHHHHHHHHHHHHHhCCCceEEEEEC-CCCcccCCcCHHHHhcccchhhh
Confidence            44568888 7899999999999 789999999999999999999999999999999 85 99999999988542110 00


Q ss_pred             hHHHHHHHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcch-HH
Q 016290           87 SCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HL  165 (392)
Q Consensus        87 ~~~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G-~~  165 (392)
                      ....+....++++..|.++|||+||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|+|++| ..
T Consensus        83 ~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~elalacD~ria~~~a~fglpev~lGl~P~~Ggt~~L~rlvG~~~  162 (725)
T 2wtb_A           83 EPKAGYISIDIITDLLEAARKPSVAAIDGLALGGGLELAMACHARISAPAAQLGLPELQLGVIPGFGGTQRLPRLVGLTK  162 (725)
T ss_dssp             CCSSSHHHHHCCCCCCCTSSSCEEEEECSEEETHHHHHHHHSSEEEECTTCEEECCGGGGTCCCCSSHHHHHHHHHCHHH
T ss_pred             hHHHHHHHHHHHHHHHHhCcCcEEEEECCccCcccHHHHHhCCEEEEcCCCEEeCchhccCCCCCccHHHHHHHhcCHHH
Confidence            00122334456677889999999999999999999999999999999999999999999999999999999999999 99


Q ss_pred             HHHHhhcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHh--
Q 016290          166 GEFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECF--  243 (392)
Q Consensus       166 a~~L~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f--  243 (392)
                      +++|++||++++|+||+++||||++||++++.+.+.++++          ++.... . +..+.  .         .|  
T Consensus       163 A~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~----------~la~~~-~-p~~~~--~---------~~~~  219 (725)
T 2wtb_A          163 ALEMILTSKPVKAEEGHSLGLIDAVVPPAELVTTARRWAL----------DIVGRR-K-PWVSS--V---------SKTD  219 (725)
T ss_dssp             HHHHHHHCCCEEHHHHHHHTSCSEECCTTTHHHHHHHHHH----------HHHTTS-S-CCCCG--G---------GCCT
T ss_pred             HHHHHHcCCCCCHHHHHHCCccceEcChhHHHHHHHHHHH----------HHHhcC-C-Chhhh--h---------hhcc
Confidence            9999999999999999999999999999998776555522          111110 0 00000  0         00  


Q ss_pred             CcCCHHHHHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHcCCccHHHHH
Q 016290          244 SKETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEG  323 (392)
Q Consensus       244 ~~~~~eei~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eG  323 (392)
                      +.+......+.+         +++++.+++..+..| +...+|++++.+...+++++++.|.+.+..++.+   +|++||
T Consensus       220 ~~~~~~~~~~~~---------~~a~~~~~~~~~g~p-A~~~~k~~~~~~~~~~~~~~l~~E~~~~~~l~~s---~~~~~~  286 (725)
T 2wtb_A          220 KLPPLGEAREIL---------TFAKAQTLKRAPNMK-HPLMCLDAIEVGIVSGPRAGLEKEAEVASQVVKL---DTTKGL  286 (725)
T ss_dssp             TSCCHHHHHHHH---------HHHHHHHHHHCTTCC-HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTTC---HHHHHH
T ss_pred             ccCccchHHHHH---------HHHHHHHHHhccCCc-HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhcc---hhHHHH
Confidence            001122222222         255666777777754 6677999999999999999999999999999999   999999


Q ss_pred             HHHHHhccCCCCCCCCC
Q 016290          324 IRALTIEKDNAPKWDPP  340 (392)
Q Consensus       324 v~a~l~dK~r~P~w~~~  340 (392)
                      +++|+ +| |.|++.+.
T Consensus       287 ~~aF~-~k-r~~~~~~~  301 (725)
T 2wtb_A          287 IHVFF-SQ-RGTAKVPG  301 (725)
T ss_dssp             HHHHH-HH-HGGGCCTT
T ss_pred             HHHhh-hh-hhhcccCC
Confidence            99999 66 67766543

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A*

Probab=100.00  E-value=1.3e-46  Score=401.38  Aligned_cols=293  Identities=15%  Similarity=0.167  Sum_probs=229.2

Q ss_pred             CCCcEEEE-EeCCEEEEEEcCCC-CCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCC-ccccCCCchhhccCCC-Cc
Q 016290           10 DEQVVLGE-EIGNVRLVTLNRPR-QLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGR-AFSAGGDLKMFYDGRN-SK   85 (392)
Q Consensus        10 ~~~~V~~~-~~~~v~~itLnrp~-~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~-~FcaG~Dl~~l~~~~~-~~   85 (392)
                      +...|.++ .+++|++||||||+ ++|+||.+|+.+|.++|+.++.|+++++||||| |+ +||+|+||+++..... ..
T Consensus         4 ~~~~i~~~~~~~~va~itlnrp~~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg-g~~~F~aG~Dl~~~~~~~~~~~   82 (715)
T 1wdk_A            4 EGKAITVTALESGIVELKFDLKGESVNKFNRLTLNELRQAVDAIKADASVKGVIVSS-GKDVFIVGADITEFVENFKLPD   82 (715)
T ss_dssp             ECSSEEEEECGGGEEEEEECCTTSSSCBCCHHHHHHHHHHHHHHHHCTTCCEEEEEE-SSSSSBBCCCHHHHHHHTTSCH
T ss_pred             CCCeEEEEEeeCCEEEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEEC-CCCeEeCCcCHHHHhhcccCCH
Confidence            34568888 78899999999998 899999999999999999999999999999999 85 9999999999864211 11


Q ss_pred             hhHHHHHHHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcch-H
Q 016290           86 DSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-H  164 (392)
Q Consensus        86 ~~~~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G-~  164 (392)
                      .....+....++++..|.+++|||||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|+|++| .
T Consensus        83 ~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~elalacD~ria~~~a~fglpev~lGl~P~~ggt~~L~r~vG~~  162 (715)
T 1wdk_A           83 AELIAGNLEANKIFSDFEDLNVPTVAAINGIALGGGLEMCLAADFRVMADSAKIGLPEVKLGIYPGFGGTVRLPRLIGVD  162 (715)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCSSCEEEEECSCEETHHHHHHHTSSEEEEETTCEEECGGGGGTCCCCSSHHHHHHHHHCHH
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeeHHHHHHHHHCCEEEEeCCCEEeChhhccCCCCCccHHHHHHHHhCHH
Confidence            122445556678889999999999999999999999999999999999999999999999999999999999999999 9


Q ss_pred             HHHHHhhcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHhC
Q 016290          165 LGEFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFS  244 (392)
Q Consensus       165 ~a~~L~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~  244 (392)
                      .+++|++||++++|+||+++||||++||++++.+.+.++++.              ...... +   .. ....+. ++.
T Consensus       163 ~A~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~--------------la~~~~-~---~~-~~~~~~-~~p  222 (715)
T 1wdk_A          163 NAVEWIASGKENRAEDALKVSAVDAVVTADKLGAAALDLIKR--------------AISGEL-D---YK-AKRQPK-LEK  222 (715)
T ss_dssp             HHHHHHHHCCCEEHHHHHHTTSSSEEECGGGHHHHHHHHHHH--------------HHTTSS-C---HH-HHHGGG-GSC
T ss_pred             HHHHHHHcCCCCCHHHHHHCCCceEEeChHHHHHHHHHHHHH--------------HhhccC-C---cc-hhcccc-cCc
Confidence            999999999999999999999999999988887766655321              100000 0   00 000000 000


Q ss_pred             -cCCHHHHHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHcCCccHHHHH
Q 016290          245 -KETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEG  323 (392)
Q Consensus       245 -~~~~eei~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eG  323 (392)
                       ..+-...-..+.         .+++.+.+-.+..-.|.+.+|++++.+...+++++++.|.+.+..++.+   +|++||
T Consensus       223 ~~~~~~~~~~~~~---------~~k~~~~~~~~g~~~A~~~~k~~v~~~~~~~~~~~l~~E~~~~~~l~~s---~~~~~~  290 (715)
T 1wdk_A          223 LKLNAIEQMMAFE---------TAKGFVAGQAGPNYPAPVEAIKTIQKAANFGRDKALEVEAAGFAKLAKT---SASNCL  290 (715)
T ss_dssp             CSCCHHHHHHHHH---------HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTS---HHHHHH
T ss_pred             cccCchhHHHHHH---------HHHHHHHHhcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc---hhHHHH
Confidence             000000000010         1222344444555668889999999999899999999999999999999   999999


Q ss_pred             HHHHHhccCCCCCC
Q 016290          324 IRALTIEKDNAPKW  337 (392)
Q Consensus       324 v~a~l~dK~r~P~w  337 (392)
                      +++|+ +| |.|+.
T Consensus       291 ~~aF~-~k-r~~~~  302 (715)
T 1wdk_A          291 IGLFL-ND-QELKK  302 (715)
T ss_dssp             HHHHH-HH-HHHHH
T ss_pred             HHHHH-hh-hhhhc
Confidence            99999 55 55543

>2w3p_A Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ring cleaving, burkholderia xenovorans LB400 crotonase; 1.50A {Burkholderia xenovorans}

Probab=100.00  E-value=1.8e-43  Score=357.29  Aligned_cols=192  Identities=14%  Similarity=0.118  Sum_probs=172.7

Q ss_pred             CCCcEEEEEeCCEEEEEEcCCC----------CCCCCCHHHHHHHHHHHHHHhhC-CCceEEEEEc-CCCccccCCCchh
Q 016290           10 DEQVVLGEEIGNVRLVTLNRPR----------QLNVISSKVVSLLAEYLEKWEKD-DQAKLVIVKG-VGRAFSAGGDLKM   77 (392)
Q Consensus        10 ~~~~V~~~~~~~v~~itLnrp~----------~lNal~~~m~~~L~~~l~~~~~d-~~v~~Vvl~g-~G~~FcaG~Dl~~   77 (392)
                      .+..|.++.+++|++||||||+          ++|+||.+|+.+|.++|+.++.| ++|++|||+| .|++||+|+|+++
T Consensus        19 ~~~~v~ve~~ggVA~ITLNRPed~~l~~g~~~k~NALs~~ml~eL~~AL~~~~~D~~~VRaVVLTGa~G~~FcAGaDL~e   98 (556)
T 2w3p_A           19 QYKHWKLSFNGPVATLGIDIAEDGGIRDGYKLKLNSYDLGVDIELHDAIQRIRFEHPEVRTVVLTSLKDRVFCSGANIFM   98 (556)
T ss_dssp             GCSSEEEEEETTEEEEEECCCTTCCSSSSCCCCTTEECHHHHHHHHHHHHHHHHHCTTCCEEEEEESSSSEEECEECHHH
T ss_pred             cCceEEEEeeCCEEEEEEecccccccccccCCCCCCCCHHHHHHHHHHHHHHHhCCCCceEEEEeCCCCCcccCCcCHHH
Confidence            4457899999999999999998          89999999999999999999999 9999999999 8899999999999


Q ss_pred             hccCCCCchhHHHHHHHHHHHHHHH----HhcCCeEEEEecCceecccccccccCceEEEeCC--eeeeccccc-cCccC
Q 016290           78 FYDGRNSKDSCLEVVYRMYWLCHHI----HTYKKTQVALAHGITMGGGASLMVPLKFSVVTEK--TVFSTPEAS-IGFHT  150 (392)
Q Consensus        78 l~~~~~~~~~~~~~~~~~~~l~~~i----~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~--a~f~~PE~~-iGl~P  150 (392)
                      +....  ......+....++++..|    .++|||+||+|||+|+|||++|+++||+|||+++  ++|++||++ +|++|
T Consensus        99 l~~~~--~~~~~~~~~~~~~l~~~L~~a~~~~pKPVIAAVnG~AlGGGleLALACD~rIAse~~~A~FglPEv~~LGL~P  176 (556)
T 2w3p_A           99 LGLST--HAWKVNFCKFTNETRNGLEDSSRHSGLKFLAAVNGACAGGGYELALACDEIYLVDDRSSSVSLPEVPLLGVLP  176 (556)
T ss_dssp             HHHSC--HHHHHHHHHHHHHHHHHHHHHHHHTSCEEEEEECSEEETHHHHHHHHSSEEEEECSSSCEEECCHHHHHSSCC
T ss_pred             Hhhcc--cHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCeechhhHHHHHhCCEEEEcCCCCcEEecccccccCCCC
Confidence            86532  111234455566778888    9999999999999999999999999999999999  999999999 99999


Q ss_pred             CchhHHHHh--hcch-HHHHHHhhcCCcccHHHHHHcCccceecCCCChHHHHHHH
Q 016290          151 DCGFSFIHS--RLPG-HLGEFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRL  203 (392)
Q Consensus       151 ~~G~s~~L~--rl~G-~~a~~L~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l  203 (392)
                      ++|++++|+  |++| .++++|++||++++|+||+++||||++||++++.+.+.++
T Consensus       177 g~Ggt~rLp~~RlVG~~rA~eLlLTGr~isA~EAl~lGLVdeVVp~~eL~~~A~~l  232 (556)
T 2w3p_A          177 GTGGLTRVTDKRKVRHDRADIFCTVVEGVRGERAKAWRLVDEVVKPNQFDQAIQAR  232 (556)
T ss_dssp             TTTHHHHHHHTSCCCHHHHHHHTTCSSCEEHHHHHHTTSCSEEECHHHHHHHHHHH
T ss_pred             CccHHHHHHhhccCCHHHHHHHHHcCCCCCHHHHHHCCCceEEeChhHHHHHHHHH
Confidence            999999999  9999 9999999999999999999999999999987776544443

>3bf0_A Protease 4; bacterial, hydrolase, inner membrane, membrane, transmembrane; 2.55A {Escherichia coli} PDB: 3bez_A

Probab=99.85  E-value=4.6e-22  Score=207.87  Aligned_cols=170  Identities=16%  Similarity=0.103  Sum_probs=142.9

Q ss_pred             EeCCEEEEEEcCCCCCCC--CCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhHHHHHHHH
Q 016290           18 EIGNVRLVTLNRPRQLNV--ISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRM   95 (392)
Q Consensus        18 ~~~~v~~itLnrp~~lNa--l~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~~~~~~~   95 (392)
                      ..++|++|+||+|.+.|+  ++..|.++|.++|+.++.|+++++|||++.+    .|||+...              ...
T Consensus       299 ~~~~VavI~l~g~i~~n~~~~~~~~~~~l~~~L~~a~~d~~vkaVVL~i~s----pGG~~~~~--------------~~i  360 (593)
T 3bf0_A          299 TGDSIGVVFANGAIMDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVNS----PGGSVTAS--------------EVI  360 (593)
T ss_dssp             CSCEEEEEEEEEEEESSSSCTTSEEHHHHHHHHHHHHHCTTEEEEEEEEEE----EEECHHHH--------------HHH
T ss_pred             CCCCEEEEEEeeeecCCccccchhHHHHHHHHHHHHHhCCCCCEEEEEecC----CCCCHHHH--------------HHH
Confidence            457899999999998898  7899999999999999999999999999974    58887642              112


Q ss_pred             HHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeecccc------------ccCccCCc-----------
Q 016290           96 YWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEA------------SIGFHTDC-----------  152 (392)
Q Consensus        96 ~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~------------~iGl~P~~-----------  152 (392)
                      ++.+..+..++|||||+|+|.|.|||+.|+++||+|||+++|.|+.+++            ++|+.|+.           
T Consensus       361 ~~~i~~l~~~~kPVia~v~g~AasgG~~iA~aaD~iva~p~a~~Gsigv~~~~~~~~~~~~klGi~~~~~~~g~~k~~~~  440 (593)
T 3bf0_A          361 RAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVANPSTLTGSIGIFGVITTVENSLDSIGVHTDGVSTSPLADVSI  440 (593)
T ss_dssp             HHHHHHHHHTTCCEEEEEEEEEETHHHHTTTTCSEEEECTTCEEECCCEEEEEEECHHHHHHTTCEEECCBSCGGGCCCT
T ss_pred             HHHHHHHHhCCCCEEEEECCChHHHHHHHHHhCCEEEECCCCEeecceeEEecCchHHHHHhcCceeeeeecccccccCc
Confidence            4556677889999999999999999999999999999999999999985            68998654           


Q ss_pred             --hhH---------------HHHhhcch-HH-----HHHHhhcCCcccHHHHHHcCccceecCCCChHHHHHHHHh
Q 016290          153 --GFS---------------FIHSRLPG-HL-----GEFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIG  205 (392)
Q Consensus       153 --G~s---------------~~L~rl~G-~~-----a~~L~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~  205 (392)
                        +.+               ..+.+.++ .+     +.+++++|+.++|+||+++||||++++.+++.+.+..++.
T Consensus       441 ~~~~t~~~~~~l~~~l~~~~~~f~~~V~~~Rg~~~~a~~~l~~G~~~ta~eA~~~GLVD~v~~~~~~~~~a~~~a~  516 (593)
T 3bf0_A          441 TRALPPEAQLMMQLSIENGYKRFITLVADARHSTPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVAKAAELAK  516 (593)
T ss_dssp             TSCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHTTCTTCEEEHHHHHHHTSCSEECCHHHHHHHHHHHSC
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcCCCcCHHHHHHCCCCcCccCHHHHHHHHHHHcC
Confidence              222               45667777 66     8899999999999999999999999987777665555544

>3rst_A Signal peptide peptidase SPPA; alpha/beta protein fold, signal peptide digestion, bacterial membrane, hydrolase; 2.37A {Bacillus subtilis}

Probab=99.80  E-value=4.6e-19  Score=165.21  Aligned_cols=167  Identities=16%  Similarity=0.068  Sum_probs=126.4

Q ss_pred             eCCEEEEEEcCCCCCCCCCHH-------HHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhHHHH
Q 016290           19 IGNVRLVTLNRPRQLNVISSK-------VVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEV   91 (392)
Q Consensus        19 ~~~v~~itLnrp~~lNal~~~-------m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~~~   91 (392)
                      +++|++|+++.+=..+.-...       .+.+|.++|+.+..|++|++|||++.    |.|+|+...             
T Consensus         2 ~~~iavi~i~G~I~~~~~~~~~~~~~~~~~~~l~~~l~~a~~d~~v~~ivL~~~----s~Gg~~~~~-------------   64 (240)
T 3rst_A            2 SSKIAVLEVSGTIQDNGDSSSLLGADGYNHRTFLKNLERAKDDKTVKGIVLKVN----SPGGGVYES-------------   64 (240)
T ss_dssp             CCEEEEEEEESCBCCC---------CCCCHHHHHHHHHHHHHCTTEEEEEEEEE----ECCBCHHHH-------------
T ss_pred             CCeEEEEEEEEEEcCCCCcCcccccCCcCHHHHHHHHHHHHhCCCcEEEEEEec----CCCCCHHHH-------------
Confidence            367889999876432211111       35789999999999999999999997    789988643             


Q ss_pred             HHHHHHHHHHHHh-cCCeEEEEecCceecccccccccCceEEEeCCeeeecc---------------------ccccCcc
Q 016290           92 VYRMYWLCHHIHT-YKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTP---------------------EASIGFH  149 (392)
Q Consensus        92 ~~~~~~l~~~i~~-~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~P---------------------E~~iGl~  149 (392)
                       ...++.+..+.. ++|||||+++|.|.|||+.|+++||+|||++++.|+.+                     +.+.|-+
T Consensus        65 -~~i~~~l~~~~~~~~kPVia~v~g~a~~gG~~lA~a~D~i~a~~~a~~g~~Gv~~~~~~~~~~l~k~Gi~~~~~~~G~~  143 (240)
T 3rst_A           65 -AEIHKKLEEIKKETKKPIYVSMGSMAASGGYYISTAADKIFATPETLTGSLGVIMESVNYSKLADKLGISFETIKSGAH  143 (240)
T ss_dssp             -HHHHHHHHHHHHHHCCCEEEEEEEEEETHHHHHHTTSSEEEECTTCEEECCCCEEEEEECHHHHHHHTCEEEEEESSTT
T ss_pred             -HHHHHHHHHHHHhCCCeEEEEECCeehHhHHHHHHhCCeeEECCCCeEeccceeeEecCHHHHHHHcCCeEEEEecccc
Confidence             123455566676 89999999999999999999999999999999999999                     6778888


Q ss_pred             CCchhHH--------------------------HHhhcchHHHHHHhhcCCcccHHHHHHcCccceecCCCChHHHHHHH
Q 016290          150 TDCGFSF--------------------------IHSRLPGHLGEFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRL  203 (392)
Q Consensus       150 P~~G~s~--------------------------~L~rl~G~~a~~L~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l  203 (392)
                      ++.+..+                          ...|-+......-+++|+.++|++|++.||||++.+.+++.+...++
T Consensus       144 k~~~~p~~~~s~~~~~~~~~~l~~~~~~f~~~Va~~R~l~~~~~~~~~~g~~~~a~~A~~~GLVD~i~~~~~~~~~~~~~  223 (240)
T 3rst_A          144 ADIMSPSREMTKEEKNIMQSMVDNSYEGFVDVISKGRGMPKAEVKKIADGRVYDGRQAKKLNLVDELGFYDDTITAMKKD  223 (240)
T ss_dssp             TTTTCTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHCSSCEEEHHHHHHTTSSSEECCHHHHHHHHHHH
T ss_pred             ccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHhcCCcccHHHHHHcCCCcccCCHHHHHHHHHHH
Confidence            8776332                          22333332223347899999999999999999999876665544444

>3viv_A 441AA long hypothetical NFED protein; protein-peptide complex, alpha / beta motif, protease, membr protein stomatin, hydrolase-protein binding complex; 2.25A {Pyrococcus horikoshii} PDB: 3bpp_A 2deo_A

Probab=99.77  E-value=2.3e-18  Score=158.81  Aligned_cols=155  Identities=15%  Similarity=0.204  Sum_probs=128.0

Q ss_pred             eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhHHHHHHHHHHH
Q 016290           19 IGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYWL   98 (392)
Q Consensus        19 ~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~~~~~~~~~l   98 (392)
                      .+.|++|+|+     |+|+..|.+.|.++|+.++++ ++++|+|+..    |.|||+...                 ..+
T Consensus         7 ~~~V~vI~i~-----g~I~~~~~~~l~~~l~~a~~~-~~~~Ivl~in----spGG~v~~~-----------------~~i   59 (230)
T 3viv_A            7 KNIVYVAQIK-----GQITSYTYDQFDRYITIAEQD-NAEAIIIELD----TPGGRADAM-----------------MNI   59 (230)
T ss_dssp             CCEEEEEEEE-----SCBCHHHHHHHHHHHHHHHHT-TCSEEEEEEE----BSCEEHHHH-----------------HHH
T ss_pred             CCeEEEEEEe-----CEECHHHHHHHHHHHHHHhcC-CCCEEEEEEe----CCCcCHHHH-----------------HHH
Confidence            3579999999     479999999999999999874 6999999876    888887532                 235


Q ss_pred             HHHHHhcCCeEEEEe---cCceecccccccccCceEEEeCCeeeeccccccCccCCchhH---------------HHHhh
Q 016290           99 CHHIHTYKKTQVALA---HGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFS---------------FIHSR  160 (392)
Q Consensus        99 ~~~i~~~~kP~IA~v---~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s---------------~~L~r  160 (392)
                      ...|..++||||++|   +|.|.|+|+.|+++||+|++.++++|+.++...++ |..|.+               ..+++
T Consensus        60 ~~~i~~~~~PVia~v~p~~G~AasaG~~ia~a~d~~~a~p~a~ig~~~p~~~~-~~~G~~~~~~~k~~~~~~~~~~~la~  138 (230)
T 3viv_A           60 VQRIQQSKIPVIIYVYPPGASAASAGTYIALGSHLIAMAPGTSIGACRPILGY-SQNGSIIEAPPAITNYFIAYIKSLAQ  138 (230)
T ss_dssp             HHHHHTCSSCEEEEECSTTCEEETHHHHHHHTSSEEEECTTCEEECCCEEEEE-CTTSCEEECCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCCCEEEEEecCCCEEhHHHHHHHHhcCceeECCCCEEEeccceecC-CCCCCchHHHHHHHHHHHHHHHHHHH
Confidence            556778999999999   99999999999999999999999999999987633 555542               14666


Q ss_pred             cch---HHHHHHhhcCCcccHHHHHHcCccceecCCCChHHHHHHH
Q 016290          161 LPG---HLGEFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRL  203 (392)
Q Consensus       161 l~G---~~a~~L~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l  203 (392)
                      ..|   ..+..++.++..++|+||+++||+|+++++  ..++...+
T Consensus       139 ~~Gr~~~~a~~~~~~~~~ltA~EAle~GliD~V~~~--~~~ll~~~  182 (230)
T 3viv_A          139 ESGRNATIAEEFITKDLSLTPEEALKYGVIEVVARD--INELLKKS  182 (230)
T ss_dssp             HTTCCHHHHHHHHHTCCEECHHHHHHTTSCSEECSS--HHHHHHHH
T ss_pred             HhCcCHHHHHHHHhcCCeecHHHHHHcCCceEecCC--HHHHHHHh
Confidence            677   578999999999999999999999999975  34444444

>1y7o_A ATP-dependent CLP protease proteolytic subunit; hydrolase; 2.51A {Streptococcus pneumoniae} SCOP: c.14.1.1

Probab=99.55  E-value=2.3e-14  Score=131.43  Aligned_cols=139  Identities=11%  Similarity=0.097  Sum_probs=108.4

Q ss_pred             CCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhHHHHHHHHHHHHHHHHhcCCeEEEEecC
Q 016290           36 ISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALAHG  115 (392)
Q Consensus        36 l~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IA~v~G  115 (392)
                      ++..+.+.|.+.|..++.|+.++.|+|.    ..|.||++..-                 ..+...|..+++||+++++|
T Consensus        54 I~~~~a~~i~~~L~~l~~~~~~k~I~l~----InSPGG~v~ag-----------------~~I~~~i~~~~~pV~t~v~G  112 (218)
T 1y7o_A           54 VEDNMANSVIAQLLFLDAQDSTKDIYLY----VNTPGGSVSAG-----------------LAIVDTMNFIKADVQTIVMG  112 (218)
T ss_dssp             BCHHHHHHHHHHHHHHHHHCTTSCEEEE----EEECCBCHHHH-----------------HHHHHHHHHSSSCEEEEEEE
T ss_pred             ECHHHHHHHHHHHHHHHhcCCCCCEEEE----EECcCCCHHHH-----------------HHHHHHHHhcCCCEEEEEcc
Confidence            8899999999999999988878888775    34666655421                 23455677889999999999


Q ss_pred             ceecccccccccCce--EEEeCCeeeeccccccCccCCchhH------------------HHHhhcch---HHHHHHhhc
Q 016290          116 ITMGGGASLMVPLKF--SVVTEKTVFSTPEASIGFHTDCGFS------------------FIHSRLPG---HLGEFLALT  172 (392)
Q Consensus       116 ~a~GgG~~lal~~d~--riate~a~f~~PE~~iGl~P~~G~s------------------~~L~rl~G---~~a~~L~lt  172 (392)
                      .|.+||+.|+++||.  |+|.+++.|++++.. |.+|..|..                  ..+++..|   .....++.+
T Consensus       113 ~AaS~G~~Ia~a~d~g~r~a~p~a~igih~p~-~g~~~~G~~~di~~~~~~i~~~~~~~~~~~a~~~G~~~~~i~~~~~~  191 (218)
T 1y7o_A          113 MAASMGTVIASSGAKGKRFMLPNAEYMIHQPM-GGTGGGTQQTDMAIAPEHLLKTRNTLEKILAENSGQSMEKVHADAER  191 (218)
T ss_dssp             EEETHHHHHHTTSCTTCEEECTTCEEECCCCC---------------CHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHS
T ss_pred             EeHHHHHHHHHcCCcCcEEEcCCcEEEEeccc-ccccCcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhC
Confidence            999999999999999  999999999999987 444434432                  45666666   367788889


Q ss_pred             CCcccHHHHHHcCccceecCCCCh
Q 016290          173 GARLNGKELVAAGLATHFVPSEKL  196 (392)
Q Consensus       173 G~~l~a~eA~~~GLv~~vv~~~~l  196 (392)
                      |+.++|+||+++||||++++++++
T Consensus       192 ~~~~ta~EA~e~GLVD~v~~~~~~  215 (218)
T 1y7o_A          192 DNWMSAQETLEYGFIDEIMANNSL  215 (218)
T ss_dssp             CCCBCHHHHHHHTSCSEECCCC--
T ss_pred             CCEEcHHHHHHCCCCcEEcCcCCC
Confidence            999999999999999999988763

>2f9y_B Acetyl-coenzyme A carboxylase carboxyl transferas beta; zinc ribbon, crotonase superfamily, spiral domain, ligase; 3.20A {Escherichia coli} SCOP: c.14.1.4

Probab=99.55  E-value=1.6e-14  Score=138.51  Aligned_cols=150  Identities=13%  Similarity=0.086  Sum_probs=118.6

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhHHHHHHHHHHHHHH
Q 016290           22 VRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYWLCHH  101 (392)
Q Consensus        22 v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~~~~~~~~~l~~~  101 (392)
                      |.++..+..-..|+++..+.+.+.++++.+.++ .+.+|+|+++|     |+|+.+...         . +....++...
T Consensus       120 V~v~a~d~~~~ggslg~~~~~Ki~r~~e~A~~~-~~PvI~l~~sG-----Garlqeg~~---------~-l~~~~~i~~a  183 (304)
T 2f9y_B          120 VVAAAFEFAFMGGSMGSVVGARFVRAVEQALED-NCPLICFSASG-----GARMQEALM---------S-LMQMAKTSAA  183 (304)
T ss_dssp             CBEEEECTTSTTTCBCTHHHHHHHHHHHHHHHH-TCCEEEEEEES-----SBCGGGTHH---------H-HHHHHHHHHH
T ss_pred             EEEEEEcCccccCCCCHHHHHHHHHHHHHHHhC-CCCEEEEECCC-----CcCHHHHHH---------H-HHHHHHHHHH
Confidence            555566666678999999999999999999998 89999999977     888855321         1 1222345555


Q ss_pred             HH---hcCCeEEEEecCceeccc-ccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcchHHHHHHhhcCCccc
Q 016290          102 IH---TYKKTQVALAHGITMGGG-ASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHLGEFLALTGARLN  177 (392)
Q Consensus       102 i~---~~~kP~IA~v~G~a~GgG-~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G~~a~~L~ltG~~l~  177 (392)
                      +.   ..++|+|++|+|.|.||| +.++++||++||.++++|++.           |...+++..|..     ++++..+
T Consensus       184 l~~~~~~~vP~IavV~G~~~GGg~a~~a~~~D~via~~~A~i~v~-----------Gp~~i~~~ig~~-----l~~~~~~  247 (304)
T 2f9y_B          184 LAKMQERGLPYISVLTDPTMGGVSASFAMLGDLNIAEPKALIGFA-----------GPRVIEQTVREK-----LPPGFQR  247 (304)
T ss_dssp             HHHHHHTTCCEEEEEEEEEEHHHHTTGGGCCSEEEECTTCBEESS-----------CHHHHHHHHTSC-----CCTTTTB
T ss_pred             HHHHhcCCCCEEEEEECCCccHHHHHHHhcCCEEEEeCCcEEEee-----------cHHHHHHHhCcc-----CCcccCC
Confidence            54   459999999999999999 788999999999999999987           556677777732     6789999


Q ss_pred             HHHHHHcCccceecCCCChHHHHHHH
Q 016290          178 GKELVAAGLATHFVPSEKLPELEKRL  203 (392)
Q Consensus       178 a~eA~~~GLv~~vv~~~~l~~~~~~l  203 (392)
                      ++++.++|++|++|+++++.+...++
T Consensus       248 Ae~~~~~Glvd~Vv~~~el~~~l~~l  273 (304)
T 2f9y_B          248 SEFLIEKGAIDMIVRRPEMRLKLASI  273 (304)
T ss_dssp             HHHHGGGTCCSEECCHHHHHHHHHHH
T ss_pred             HHHHHhcCCccEEeCcHHHHHHHHHH
Confidence            99999999999999886655444433

>2f9i_A Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; zinc ribbon, crotonase superfamily, spiral domain; 1.98A {Staphylococcus aureus}

Probab=99.44  E-value=1.1e-12  Score=126.80  Aligned_cols=153  Identities=10%  Similarity=0.071  Sum_probs=111.5

Q ss_pred             EeCCEEEEEEcCCC---------CCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhH
Q 016290           18 EIGNVRLVTLNRPR---------QLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSC   88 (392)
Q Consensus        18 ~~~~v~~itLnrp~---------~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~   88 (392)
                      .+|.-..|.-|++.         ..++++++..+.+..+++.+++. .+-+|.|.-+++++. |-+...           
T Consensus       114 i~G~~V~Via~d~~~~~~~~~~~~~G~~~~~~~~Ka~r~~~~A~~~-~~PlI~lvdt~Ga~~-g~~ae~-----------  180 (327)
T 2f9i_A          114 LNGRAVTVIGQQRGKDTKDNIYRNFGMAHPEGYRKALRLMKQAEKF-NRPIFTFIDTKGAYP-GKAAEE-----------  180 (327)
T ss_dssp             ETTEEEEEEEECCCSSHHHHHHTGGGCCCHHHHHHHHHHHHHHHHT-TCCEEEEEEESCSCC-CHHHHH-----------
T ss_pred             ECCEEEEEEEEcCCCchhhhhhhhcCCCCHHHHHHHHHHHHHHhhc-CCCEEEEEeCCCCCc-chhhhh-----------
Confidence            45555556666665         45789999999999999998876 456666654433322 211110           


Q ss_pred             HHHHHHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcch-HHHH
Q 016290           89 LEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HLGE  167 (392)
Q Consensus        89 ~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G-~~a~  167 (392)
                      ........++...+..+++|+||+|+|.|.|||+.++++||++||++++.|++      +.|.++++.++.+..+ ..+.
T Consensus       181 ~g~~~~~a~~l~al~~~~vPvIavV~G~a~GGGa~~~~~~D~via~~~A~~~v------~~peg~a~il~~~~~~a~~A~  254 (327)
T 2f9i_A          181 RGQSESIATNLIEMASLKVPVIAIVIGEGGSGGALGIGIANKVLMLENSTYSV------ISPEGAAALLWKDSNLAKIAA  254 (327)
T ss_dssp             TTHHHHHHHHHHHHHTCSSCEEEEEEEEEBHHHHHTTCCCSEEEEETTCBCBS------SCHHHHHHHHSSCGGGHHHHH
T ss_pred             hhhHHHHHHHHHHHHhCCCCEEEEEECCcChHHHHHHHCCCEEEEcCCceEee------cCchHHHHHHHHHhcchHHHH
Confidence            01122335667788999999999999999999999999999999999999885      3566555555455544 5666


Q ss_pred             HHhhcCCcccHHHHHHcCccceecCC
Q 016290          168 FLALTGARLNGKELVAAGLATHFVPS  193 (392)
Q Consensus       168 ~L~ltG~~l~a~eA~~~GLv~~vv~~  193 (392)
                      ++    ..++|++|+++|+||+|||.
T Consensus       255 e~----~~itA~~a~~~GlVd~VV~e  276 (327)
T 2f9i_A          255 ET----MKITAHDIKQLGIIDDVISE  276 (327)
T ss_dssp             HH----HTCBHHHHHHTTSSSEEECC
T ss_pred             HH----cCCCHHHHHHcCCceEEecC
Confidence            65    77999999999999999983

>2f9y_A Acetyl-COA carboxylase, carboxyltransferase alpha; zinc ribbon, crotonase superfamily, spiral domain, ligase; 3.20A {Escherichia coli} SCOP: c.14.1.4

Probab=99.40  E-value=1.9e-12  Score=125.75  Aligned_cols=139  Identities=10%  Similarity=0.026  Sum_probs=108.2

Q ss_pred             CCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhHHHHHHHHHHHHHHHHhcCCeEEE
Q 016290           32 QLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVA  111 (392)
Q Consensus        32 ~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IA  111 (392)
                      ..++++++..+.+..+++.+++. .+-+|.|.-+++++. |-...+           ........++...+..+++|+|+
T Consensus       151 ~~G~~~~~~~~Ka~r~~~~A~~~-~lPlI~lvDt~Ga~~-g~~aE~-----------~g~~~~~a~~l~al~~~~vPvIa  217 (339)
T 2f9y_A          151 NFGMPAPEGYRKALRLMQMAERF-KMPIITFIDTPGAYP-GVGAEE-----------RGQSEAIARNLREMSRLGVPVVC  217 (339)
T ss_dssp             GGGCCCHHHHHHHHHHHHHHHHT-TCCEEEEEEESCSCC-SHHHHH-----------TTHHHHHHHHHHHHHTCSSCEEE
T ss_pred             hcCCCCHHHHHHHHHHHHHHhhc-CCCEEEEEeCCCCcc-chHHHH-----------HHHHHHHHHHHHHHHhCCCCEEE
Confidence            34789999999999999988876 456666654433332 211110           11123335677889999999999


Q ss_pred             EecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcch-HHHHHHhhcCCcccHHHHHHcCcccee
Q 016290          112 LAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HLGEFLALTGARLNGKELVAAGLATHF  190 (392)
Q Consensus       112 ~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G-~~a~~L~ltG~~l~a~eA~~~GLv~~v  190 (392)
                      +|+|.|.|||+.++++||++||++++.|++      +.|+++++.++.+..+ ..+.++    ..++|++|+++|+||+|
T Consensus       218 vV~G~a~GGGa~~~~~~D~via~p~A~~~v------~~Peg~asil~~~~~~~~~Aae~----~~itA~~a~~~GlVd~V  287 (339)
T 2f9y_A          218 TVIGEGGSGGALAIGVGDKVNMLQYSTYSV------ISPEGCASILWKSADKAPLAAEA----MGIIRPRLKELKLIDSI  287 (339)
T ss_dssp             EEEEEEEHHHHHTTCCCSEEEECTTCEEES------SCHHHHHHHHSSCSTTHHHHHHH----HTCSHHHHHTTTSCSCC
T ss_pred             EEeCCcCcHHHHHHhccCeeeecCCCEEEe------eccchHHHHHHHhhccHHHHHHH----cCCCHHHHHHcCCeeEE
Confidence            999999999999999999999999999997      5688888887777776 667666    67999999999999999


Q ss_pred             cCC
Q 016290          191 VPS  193 (392)
Q Consensus       191 v~~  193 (392)
                      ||.
T Consensus       288 V~e  290 (339)
T 2f9y_A          288 IPE  290 (339)
T ss_dssp             CCC
T ss_pred             ecC
Confidence            984

>2cby_A ATP-dependent CLP protease proteolytic subunit 1; serine protease, endopept mycobacterium tuberculosis, ATP-dependent protease; 2.6A {Mycobacterium tuberculosis} SCOP: c.14.1.1 PDB: 2c8t_A 2ce3_A

Probab=98.90  E-value=8.4e-09  Score=93.60  Aligned_cols=146  Identities=13%  Similarity=0.134  Sum_probs=102.0

Q ss_pred             EEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhHHHHHHHHHHHHHHH
Q 016290           23 RLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYWLCHHI  102 (392)
Q Consensus        23 ~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~~~~~~~~~l~~~i  102 (392)
                      ++|.++.+     ++..+.+.+.+.|..++.++.++.|+|.=    =|-||++..                 ...+...|
T Consensus        28 rii~l~G~-----I~~~~a~~i~~~L~~~~~~~~~k~I~l~I----nSPGG~v~a-----------------~~~I~~~i   81 (208)
T 2cby_A           28 RIIFLGSE-----VNDEIANRLCAQILLLAAEDASKDISLYI----NSPGGSISA-----------------GMAIYDTM   81 (208)
T ss_dssp             TEEEECSC-----BCHHHHHHHHHHHHHHHHHCSSSCEEEEE----EECCBCHHH-----------------HHHHHHHH
T ss_pred             cEEEEcCE-----ECHHHHHHHHHHHHHHHhCCCCCCEEEEE----ECCCCCHHH-----------------HHHHHHHH
Confidence            34666654     78899999999999998877777666642    244444321                 12355667


Q ss_pred             HhcCCeEEEEecCceecccccccccCce--EEEeCCeeeeccccccCcc---CCchhH------------HHHhhcch--
Q 016290          103 HTYKKTQVALAHGITMGGGASLMVPLKF--SVVTEKTVFSTPEASIGFH---TDCGFS------------FIHSRLPG--  163 (392)
Q Consensus       103 ~~~~kP~IA~v~G~a~GgG~~lal~~d~--riate~a~f~~PE~~iGl~---P~~G~s------------~~L~rl~G--  163 (392)
                      ..+++||++.+.|.|.++|.-++++||.  |++.++|.+++....-|..   .+..-.            ..+.+..|  
T Consensus        82 ~~~~~pV~~~v~g~AaS~g~~Ia~agd~~~~~a~p~a~igih~p~~~~~G~~~d~~~~~~~l~~~~~~~~~~~a~~~g~~  161 (208)
T 2cby_A           82 VLAPCDIATYAMGMAASMGEFLLAAGTKGKRYALPHARILMHQPLGGVTGSAADIAIQAEQFAVIKKEMFRLNAEFTGQP  161 (208)
T ss_dssp             HHCSSCEEEEEEEEEETHHHHHHHTSCTTCEEECTTCEEECCCC----------CHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred             HhcCCCEEEEECcEeHHHHHHHHhCCCcCCEEEcCCcEEEEecccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcC
Confidence            7889999999999999999999999998  9999999998876543221   000000            11222223  


Q ss_pred             -HHHHHHhhcCCcccHHHHHHcCccceecCCC
Q 016290          164 -HLGEFLALTGARLNGKELVAAGLATHFVPSE  194 (392)
Q Consensus       164 -~~a~~L~ltG~~l~a~eA~~~GLv~~vv~~~  194 (392)
                       .....++-.|..++|+||++.||||++....
T Consensus       162 ~~~i~~~~~~~~~~ta~eA~e~GLvD~i~~~~  193 (208)
T 2cby_A          162 IERIEADSDRDRWFTAAEALEYGFVDHIITRA  193 (208)
T ss_dssp             HHHHHHHHHTTCEEEHHHHHHHTSCSEECSCC
T ss_pred             HHHHHHHHhCCcEEcHHHHHHcCCCcEecCch
Confidence             2344566789999999999999999998653

>3qwd_A ATP-dependent CLP protease proteolytic subunit; caseinolytic protease, serin-protease, hydrolase; 2.10A {Staphylococcus aureus subsp} SCOP: c.14.1.1 PDB: 3v5e_A 3v5i_A 3sta_V 3st9_A

Probab=98.52  E-value=1e-06  Score=79.32  Aligned_cols=146  Identities=15%  Similarity=0.117  Sum_probs=99.3

Q ss_pred             EEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhHHHHHHHHHHHHHHHH
Q 016290           24 LVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYWLCHHIH  103 (392)
Q Consensus        24 ~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~~~~~~~~~l~~~i~  103 (392)
                      +|.|+.|     ++..+.+.+...|..++.++..+.|+|.=.    |-||++..                 ...+...|.
T Consensus        29 iI~l~g~-----I~~~~a~~i~~~L~~l~~~~~~~~I~l~In----SPGG~v~~-----------------~~~I~~~i~   82 (203)
T 3qwd_A           29 IIMLGSQ-----IDDNVANSIVSQLLFLQAQDSEKDIYLYIN----SPGGSVTA-----------------GFAIYDTIQ   82 (203)
T ss_dssp             EEEECSC-----BCHHHHHHHHHHHHHHHHHCSSSCEEEEEE----ECCBCHHH-----------------HHHHHHHHH
T ss_pred             EEEEcCE-----ECHHHHHHHHHHHHHHHhcCCCCCEEEEEe----CCCCCHHH-----------------HHHHHHHHH
Confidence            4555544     889999999999999988766666555322    44444321                 123455677


Q ss_pred             hcCCeEEEEecCceecccccccccCc--eEEEeCCeeeeccccccCcc---CCchh-HHHHhhc-----------ch---
Q 016290          104 TYKKTQVALAHGITMGGGASLMVPLK--FSVVTEKTVFSTPEASIGFH---TDCGF-SFIHSRL-----------PG---  163 (392)
Q Consensus       104 ~~~kP~IA~v~G~a~GgG~~lal~~d--~riate~a~f~~PE~~iGl~---P~~G~-s~~L~rl-----------~G---  163 (392)
                      .+++||++.+.|.|.++|.-++++||  .|++.+++.|.+....-|..   .+.-- ...+.++           -|   
T Consensus        83 ~~~~~V~t~~~G~AaSag~~i~~ag~~g~r~~~p~a~imiHqP~~~~~G~a~di~~~a~~l~~~~~~~~~~~a~~tG~~~  162 (203)
T 3qwd_A           83 HIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEIAANHILKTREKLNRILSERTGQSI  162 (203)
T ss_dssp             HSSSCEEEEEEEEEETHHHHHHHTSCTTCEEECTTCEEECCCCSSSTTTTSCHHHHHHHHHTTHHHHHHHHHHHHHCCCH
T ss_pred             HhcCCcEEEEeeeehhHHHHHHHcCCcCeEEEcCCceEEEecccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH
Confidence            78999999999999999999999999  69999999998865543321   11100 0111111           12   


Q ss_pred             HHHHHHhhcCCcccHHHHHHcCccceecCCCC
Q 016290          164 HLGEFLALTGARLNGKELVAAGLATHFVPSEK  195 (392)
Q Consensus       164 ~~a~~L~ltG~~l~a~eA~~~GLv~~vv~~~~  195 (392)
                      .....++-....++|+||++.||+|+++.+..
T Consensus       163 e~i~~~~~~d~~lta~EA~e~GliD~I~~~~~  194 (203)
T 3qwd_A          163 EKIQKDTDRDNFLTAEEAKEYGLIDEVMVPET  194 (203)
T ss_dssp             HHHHHHHTSCCCEEHHHHHHHTSCSEECCCCC
T ss_pred             HHHHHHhhcCceecHHHHHHcCCcCEecCCcc
Confidence            22333334456699999999999999998754

>1yg6_A ATP-dependent CLP protease proteolytic subunit; endopeptidase CLP, caseinolytic protease, protease TI, heat shock protein F21.5, hydrolase; 1.90A {Escherichia coli} SCOP: c.14.1.1 PDB: 1tyf_A 2fzs_A* 3mt6_R 1yg8_A 3hln_A 2zl2_A 2zl0_A 2zl4_A 2zl3_A 3tt7_A* 3tt6_A 3ktg_A 3kth_A 3kti_A* 3ktj_A* 3ktk_A* 3q7h_A

Probab=98.48  E-value=4.3e-07  Score=81.26  Aligned_cols=144  Identities=15%  Similarity=0.109  Sum_probs=96.9

Q ss_pred             EEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhHHHHHHHHHHHHHHHH
Q 016290           24 LVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYWLCHHIH  103 (392)
Q Consensus        24 ~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~~~~~~~~~l~~~i~  103 (392)
                      +|.++.+     ++..+.+.+.+.|..++.++.++.|+|.=.    |-||++..                 ...+...|.
T Consensus        28 ii~l~g~-----I~~~~a~~i~~~L~~l~~~~~~~~I~l~In----SPGG~v~a-----------------~~~I~~~i~   81 (193)
T 1yg6_A           28 VIFLTGQ-----VEDHMANLIVAQMLFLEAENPEKDIYLYIN----SPGGVITA-----------------GMSIYDTMQ   81 (193)
T ss_dssp             EEEEESS-----BCHHHHHHHHHHHHHHHHHCSSSCEEEEEE----ECCBCHHH-----------------HHHHHHHHH
T ss_pred             EEEEcCE-----EcHHHHHHHHHHHHHHHhcCCCCCEEEEEE----CcCCCHHH-----------------HHHHHHHHH
Confidence            4556554     789999999999999987766777776422    44444321                 123555677


Q ss_pred             hcCCeEEEEecCceecccccccccCce--EEEeCCeeeeccccccCccC---CchhH-HH-----------Hhhcch---
Q 016290          104 TYKKTQVALAHGITMGGGASLMVPLKF--SVVTEKTVFSTPEASIGFHT---DCGFS-FI-----------HSRLPG---  163 (392)
Q Consensus       104 ~~~kP~IA~v~G~a~GgG~~lal~~d~--riate~a~f~~PE~~iGl~P---~~G~s-~~-----------L~rl~G---  163 (392)
                      .+++|+++.+.|.|..+|.-++++||.  |++.++|.+++.....|...   +.... ..           +.+.-|   
T Consensus        82 ~~~~pV~~~v~g~AaS~g~~Ia~ag~~~~r~a~p~s~i~ih~p~~~~~G~~~d~~~~~~~l~~~~~~~~~~~a~~~g~~~  161 (193)
T 1yg6_A           82 FIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMALHTGQSL  161 (193)
T ss_dssp             HSSSCEEEEEEEEEETHHHHHHHTSCTTCEEECTTCEEEECCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
T ss_pred             hcCCCEEEEEeeeHHHHHHHHHHCCCcCcEEEecCcEEEEEeccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH
Confidence            789999999999999999999999999  99999998876554433210   00000 00           111112   


Q ss_pred             HHHHHHhhcCCcccHHHHHHcCccceecCC
Q 016290          164 HLGEFLALTGARLNGKELVAAGLATHFVPS  193 (392)
Q Consensus       164 ~~a~~L~ltG~~l~a~eA~~~GLv~~vv~~  193 (392)
                      .....++-.+..++|+||++.||||+++.+
T Consensus       162 ~~i~~~~~~~~~~ta~eA~~~GliD~i~~~  191 (193)
T 1yg6_A          162 EQIERDTERDRFLSAPEAVEYGLVDSILTH  191 (193)
T ss_dssp             HHHHHHTSSCEEEEHHHHHHHTSSSEECCC
T ss_pred             HHHHHHhcCCeEEcHHHHHHcCCCCEecCC
Confidence            122333223456799999999999999865

>2f6i_A ATP-dependent CLP protease, putative; structural genomics, structural genomics conso SGC, hydrolase; 2.45A {Plasmodium falciparum} SCOP: c.14.1.1

Probab=98.42  E-value=1.7e-06  Score=78.68  Aligned_cols=145  Identities=12%  Similarity=0.040  Sum_probs=95.3

Q ss_pred             EEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhHHHHHHHHHHHHHHH
Q 016290           23 RLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYWLCHHI  102 (392)
Q Consensus        23 ~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~~~~~~~~~l~~~i  102 (392)
                      ++|.|+-+     ++..+...+...|..++.++. +.|+|.=.    |-||++..                 ...+...|
T Consensus        40 riI~l~G~-----I~~~~a~~i~~~L~~l~~~~~-k~I~l~IN----SPGGsv~a-----------------~~~I~~~i   92 (215)
T 2f6i_A           40 RIIYLTDE-----INKKTADELISQLLYLDNINH-NDIKIYIN----SPGGSINE-----------------GLAILDIF   92 (215)
T ss_dssp             TEEEECSC-----BCHHHHHHHHHHHHHHHHHCC-SCEEEEEE----ECCBCHHH-----------------HHHHHHHH
T ss_pred             eEEEEccE-----ECHHHHHHHHHHHHHHHhCCC-CcEEEEEE----CCCCCHHH-----------------HHHHHHHH
Confidence            45666654     788899999999998876555 66655321    33444321                 12355567


Q ss_pred             HhcCCeEEEEecCceecccccccccCce--EEEeCCeeeeccccccCcc---CCchhH-HHHhh-----------cch--
Q 016290          103 HTYKKTQVALAHGITMGGGASLMVPLKF--SVVTEKTVFSTPEASIGFH---TDCGFS-FIHSR-----------LPG--  163 (392)
Q Consensus       103 ~~~~kP~IA~v~G~a~GgG~~lal~~d~--riate~a~f~~PE~~iGl~---P~~G~s-~~L~r-----------l~G--  163 (392)
                      ..+++|+++.+.|.|..+|.-++++||.  |++.++|.+++.....|..   .+.... -.+.+           ..|  
T Consensus        93 ~~~~~pV~t~v~g~AAS~g~~Ia~agd~g~i~a~p~s~i~ih~p~~~~~G~~~di~~~~~el~~~~~~i~~~ya~~~g~~  172 (215)
T 2f6i_A           93 NYIKSDIQTISFGLVASMASVILASGKKGKRKSLPNCRIMIHQPLGNAFGHPQDIEIQTKEILYLKKLLYHYLSSFTNQT  172 (215)
T ss_dssp             HHSSSCEEEEEEEEECHHHHHHHHTSCTTCEEECTTCEEESSCTTCSCC--------CHHHHHHHHHHHHHHHHHHHCCC
T ss_pred             HhcCCCEEEEEeeEhHhHHHHHHHcCCcccEEEcCCCEEEEeccccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhCcC
Confidence            7889999999999999999999999999  9999999988766543321   111100 00111           111  


Q ss_pred             -HHHHHHhhcCCcccHHHHHHcCccceecCCC
Q 016290          164 -HLGEFLALTGARLNGKELVAAGLATHFVPSE  194 (392)
Q Consensus       164 -~~a~~L~ltG~~l~a~eA~~~GLv~~vv~~~  194 (392)
                       .....++-.+..++|+||++.||||+++.+.
T Consensus       173 ~e~i~~~~~~~~~lta~eA~e~GLiD~I~~~~  204 (215)
T 2f6i_A          173 VETIEKDSDRDYYMNALEAKQYGIIDEVIETK  204 (215)
T ss_dssp             HHHHHHHHHTTCEECHHHHHHHTSCSEECCCS
T ss_pred             HHHHHHHHhCCeecCHHHHHHCCCCCEecCCc
Confidence             1222332234567999999999999998764

>3p2l_A ATP-dependent CLP protease proteolytic subunit; structural genomics, center for structural genomics of infec diseases, csgid; 2.29A {Francisella tularensis subsp} SCOP: c.14.1.1

Probab=98.34  E-value=2.4e-06  Score=76.89  Aligned_cols=143  Identities=19%  Similarity=0.130  Sum_probs=97.3

Q ss_pred             EEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhHHHHHHHHHHHHHHH
Q 016290           23 RLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYWLCHHI  102 (392)
Q Consensus        23 ~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~~~~~~~~~l~~~i  102 (392)
                      ++|.|+.|     ++..+.+.+...|..++.++..+.|+|.=.    |-||++..                 ...+...|
T Consensus        31 riI~l~g~-----I~~~~a~~i~~~L~~l~~~~~~~~I~l~IN----SpGG~v~~-----------------~~~I~~~i   84 (201)
T 3p2l_A           31 RIVFLNGE-----VNDHSANLVIAQLLFLESEDPDKDIYFYIN----SPGGMVTA-----------------GMGVYDTM   84 (201)
T ss_dssp             TEEEEESC-----BCHHHHHHHHHHHHHHHHHCSSSCEEEEEE----ECCBCHHH-----------------HHHHHHHH
T ss_pred             CEEEEcCE-----ECHHHHHHHHHHHHHHHhcCCCCCEEEEEE----CCCCCHHH-----------------HHHHHHHH
Confidence            35666654     889999999999999987766666665422    44454321                 12355667


Q ss_pred             HhcCCeEEEEecCceecccccccccCce--EEEeCCeeeeccccccCccCCchhH-------HHHhhc-----------c
Q 016290          103 HTYKKTQVALAHGITMGGGASLMVPLKF--SVVTEKTVFSTPEASIGFHTDCGFS-------FIHSRL-----------P  162 (392)
Q Consensus       103 ~~~~kP~IA~v~G~a~GgG~~lal~~d~--riate~a~f~~PE~~iGl~P~~G~s-------~~L~rl-----------~  162 (392)
                      ..+++|+++.+.|.|..+|.-++++||-  |++.+++.+.+....-|.   .|-.       ..+.++           -
T Consensus        85 ~~~~~~v~t~~~G~AaS~g~~i~~ag~~g~r~~~p~a~imiH~p~~~~---~G~a~di~~~a~~l~~~~~~~~~~ya~~t  161 (201)
T 3p2l_A           85 QFIKPDVSTICIGLAASMGSLLLAGGAKGKRYSLPSSQIMIHQPLGGF---RGQASDIEIHAKNILRIKDRLNKVLAHHT  161 (201)
T ss_dssp             HHSSSCEEEEEEEEEETHHHHHHHTSSTTCEEECTTCEEEECCCEEEE---EEEHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhCCCeEEEEcCEehhHHHHHHHcCccCCEEEcCCCeEEEecccccc---CCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            7889999999999999999999999998  999999988776654322   1111       011111           1


Q ss_pred             h---HHHHHHhhcCCcccHHHHHHcCccceecCCC
Q 016290          163 G---HLGEFLALTGARLNGKELVAAGLATHFVPSE  194 (392)
Q Consensus       163 G---~~a~~L~ltG~~l~a~eA~~~GLv~~vv~~~  194 (392)
                      |   .....++-....++|+||++.||||+++++.
T Consensus       162 G~~~e~i~~~~~~~~~lta~EA~e~GliD~I~~~~  196 (201)
T 3p2l_A          162 GQDLETIVKDTDRDNFMMADEAKAYGLIDHVIESR  196 (201)
T ss_dssp             CCCHHHHHHHTSSCEEEEHHHHHHHTSCSEECCCS
T ss_pred             CcCHHHHHHHhhcCeeecHHHHHHcCCccEecCCH
Confidence            2   1222332223447999999999999999763

>1tg6_A Putative ATP-dependent CLP protease proteolytic S; mitochondrial CLPP, CLP/HSP 100, ATP-dependent protease, HYD; HET: FME; 2.10A {Homo sapiens} SCOP: c.14.1.1

Probab=98.27  E-value=6.1e-06  Score=77.50  Aligned_cols=147  Identities=14%  Similarity=0.045  Sum_probs=97.3

Q ss_pred             EEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhHHHHHHHHHHHHHHH
Q 016290           23 RLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYWLCHHI  102 (392)
Q Consensus        23 ~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~~~~~~~~~l~~~i  102 (392)
                      ++|.|+.+     ++..+...+...|..++.++..+.|+|.=.    |-||++..-                 ..+...|
T Consensus        83 rII~l~G~-----I~d~~a~~iiaqL~~l~~ed~~k~I~L~IN----SPGGsV~ag-----------------~aIyd~I  136 (277)
T 1tg6_A           83 RIVCVMGP-----IDDSVASLVIAQLLFLQSESNKKPIHMYIN----SPGGVVTAG-----------------LAIYDTM  136 (277)
T ss_dssp             TEEEEESS-----BCHHHHHHHHHHHHHHHHHCSSSCEEEEEE----ECCBCHHHH-----------------HHHHHHH
T ss_pred             cEEEEcCE-----ECHHHHHHHHHHHHHHHhcCCCCCEEEEEE----CCCCCHHHH-----------------HHHHHHH
Confidence            45666654     888999999999998876555676666422    344443211                 2344556


Q ss_pred             HhcCCeEEEEecCceecccccccccCce--EEEeCCeeeeccccccCccCCchhHH----HHh-----------hcch--
Q 016290          103 HTYKKTQVALAHGITMGGGASLMVPLKF--SVVTEKTVFSTPEASIGFHTDCGFSF----IHS-----------RLPG--  163 (392)
Q Consensus       103 ~~~~kP~IA~v~G~a~GgG~~lal~~d~--riate~a~f~~PE~~iGl~P~~G~s~----~L~-----------rl~G--  163 (392)
                      ...++||++.+.|.|..+|.-|+++||.  |++.+++.+++....-|......-..    .+-           +.-|  
T Consensus       137 ~~~k~pV~t~v~G~AASaG~~Ia~Agd~gkr~a~P~S~ImihqP~~g~~G~a~Di~~~a~ei~~~~~~~~~i~a~~tG~~  216 (277)
T 1tg6_A          137 QYILNPICTWCVGQAASMGSLLLAAGTPGMRHSLPNSRIMIHQPSGGARGQATDIAIQAEEIMKLKKQLYNIYAKHTKQS  216 (277)
T ss_dssp             HHSCSCEEEEEEEEEETHHHHHHHTSCTTCEEECTTCEEEECCCCCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred             HhcCCCEEEEEccEeHHHHHHHHHCCCcCCEEEecCCEEEEecccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            7788999999999999999999999998  99999998877654433211000000    011           1112  


Q ss_pred             -HHHHHHhhcCCcccHHHHHHcCccceecCCCC
Q 016290          164 -HLGEFLALTGARLNGKELVAAGLATHFVPSEK  195 (392)
Q Consensus       164 -~~a~~L~ltG~~l~a~eA~~~GLv~~vv~~~~  195 (392)
                       .....++-.+..++|+||++.||||+++.+..
T Consensus       217 ~e~i~~~~drd~~lta~EAle~GLID~I~~~~~  249 (277)
T 1tg6_A          217 LQVIESAMERDRYMSPMEAQEFGILDKVLVHPP  249 (277)
T ss_dssp             HHHHHHHHSSCEEECHHHHHHHTSCSEECSSCC
T ss_pred             HHHHHHHHhcCcccCHHHHHHCCCCCEecCcch
Confidence             12233333355689999999999999997643

>2w3p_A Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ring cleaving, burkholderia xenovorans LB400 crotonase; 1.50A {Burkholderia xenovorans}

Probab=98.04  E-value=0.00016  Score=73.64  Aligned_cols=212  Identities=14%  Similarity=0.114  Sum_probs=149.4

Q ss_pred             EEEeCCEEEEEEcCCCCC-------------CCCCHHHHHHHHHHHHHHh-hCCCceEEEEEcCCCccccCCCchhhccC
Q 016290           16 GEEIGNVRLVTLNRPRQL-------------NVISSKVVSLLAEYLEKWE-KDDQAKLVIVKGVGRAFSAGGDLKMFYDG   81 (392)
Q Consensus        16 ~~~~~~v~~itLnrp~~l-------------Nal~~~m~~~L~~~l~~~~-~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~   81 (392)
                      ++...+++.++...|..-             +..-..|..+|.++|..+. .+..|...+++..|..       ..+...
T Consensus       272 i~ra~r~a~~~~~g~~~a~~~~ld~i~aa~~~~~~l~~~~el~~All~l~~ne~~~~~~~~~t~g~~-------~~~~~~  344 (556)
T 2w3p_A          272 IDRAKRIATFTAKAPQTEPPASIDAIVAAGANWWPLKFAREFDDAILSMRTNELAVGTWVFRTEGDA-------RHLLAA  344 (556)
T ss_dssp             EETTTTEEEEEEECCSSCCCCSHHHHHHHGGGSHHHHHHHHHHHHHHHHHHHCSSCCEEEEEEESCH-------HHHHHH
T ss_pred             HHHHHHHHHHHhcCCCCCchhhHHHHHHhhhcchhhhhhhHHHHHHHhhhhccHHHhHhhhhccCCH-------HHHhhh
Confidence            344457888888876532             2233568889977777665 4578999999887732       332210


Q ss_pred             ----CCCchhH--HHHHHHHHHHHHHHHhcCCeEEEEec-Cceeccc-ccccccCceEEEeC-------Ceeeecccccc
Q 016290           82 ----RNSKDSC--LEVVYRMYWLCHHIHTYKKTQVALAH-GITMGGG-ASLMVPLKFSVVTE-------KTVFSTPEASI  146 (392)
Q Consensus        82 ----~~~~~~~--~~~~~~~~~l~~~i~~~~kP~IA~v~-G~a~GgG-~~lal~~d~riate-------~a~f~~PE~~i  146 (392)
                          ....++|  .+......+...+|-..+.-++|.|+ |.|+.|- ++|+++||..++-+       ...+.+.+.++
T Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~r~d~~~~~~~~~~~~~~~~~g~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  424 (556)
T 2w3p_A          345 DASLMQHKDHWFVRETIGLLRRTLARIDVSSRSLFALIEPGSCFAGTFAELAFAADRTYMAALPANEDEEPAITLSEVNF  424 (556)
T ss_dssp             HHHHHHTTTSHHHHHHHHHHHHHHHHHHTCSSEEEEEECTTCCEEGGGHHHHHTSSEEEECCCTTCTTTSCCEECCGGGG
T ss_pred             HHHHHhccchHHHHHHHHHHHHHHHHhcccchhheeeecCCcchHHHHHHHHHHhhhhhhhcCCCCCCCCceeEeecccc
Confidence                0012233  33333345677788888999999997 8998776 59999999999853       47899999999


Q ss_pred             CccCCchhHHHHhh-cch---HHHHHHhhcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhh
Q 016290          147 GFHTDCGFSFIHSR-LPG---HLGEFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFS  222 (392)
Q Consensus       147 Gl~P~~G~s~~L~r-l~G---~~a~~L~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~  222 (392)
                      |.+|-+-+..+|.+ ..|   .+..--.-.|+++++++|.++||||...++=++++.++-.                   
T Consensus       425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------  485 (556)
T 2w3p_A          425 GLYPMVTHQSRLARRFYEETEPLDAVRSRIGQAIKPVEAERLGLVTASPDDIDWADEIRIA-------------------  485 (556)
T ss_dssp             TTSCCTTSSCHHHHHTTTCHHHHHHHHTTTTSCBCHHHHHHTTSSSBCCCTTTHHHHHHHH-------------------
T ss_pred             CcccCCCchhHHHHHhcCCcchHHHHHHHhCCCCCHHHHHhcCCeecCcccCChHHHHHHH-------------------
Confidence            99998877666654 444   3433345679999999999999999988777777643322                   


Q ss_pred             cccCCChhhHHHHHHHHHHHhCcCCHHHHHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHH
Q 016290          223 EDVQLDGQSVLNKQSIIDECFSKETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECL  301 (392)
Q Consensus       223 ~~~~~~~~~~~~~~~~i~~~f~~~~~eei~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l  301 (392)
                                                                      ++.-+..||.++...-..+|-+-..+++.-+
T Consensus       486 ------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  516 (556)
T 2w3p_A          486 ------------------------------------------------LEERAAMSPDALTGLEANLRFNGPETMETRI  516 (556)
T ss_dssp             ------------------------------------------------HHHHHHSCHHHHHHHHHHHSSCSCCCHHHHH
T ss_pred             ------------------------------------------------HHHHhccCcchhccchhhcccCCchhhhhHH
Confidence                                                            5667788999999888888866555654433

>4gm2_A ATP-dependent CLP protease proteolytic subunit; structural genomics, structural genomics consortium, SGC, PR hydrolase; 2.80A {Plasmodium falciparum} PDB: 4hnk_A

Probab=97.92  E-value=0.00011  Score=66.04  Aligned_cols=149  Identities=13%  Similarity=0.120  Sum_probs=94.4

Q ss_pred             EEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCce--EEEEEcCCCc----cccCCCchhhccCCCCchhHHHHHHHHHH
Q 016290           24 LVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAK--LVIVKGVGRA----FSAGGDLKMFYDGRNSKDSCLEVVYRMYW   97 (392)
Q Consensus        24 ~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~--~Vvl~g~G~~----FcaG~Dl~~l~~~~~~~~~~~~~~~~~~~   97 (392)
                      +|-|+-|     ++.++...+...|..++.++..+  .|.|-+.|..    .-.-||+.                 ....
T Consensus        30 iifl~~~-----I~d~~a~~iiaqLl~L~~ed~~k~I~lyINSpG~~~~~~~~~~G~v~-----------------agla   87 (205)
T 4gm2_A           30 IIFLSSP-----IYPHISEQIISQLLYLEYESKRKPIHLYINSTGDIDNNKIINLNGIT-----------------DVIS   87 (205)
T ss_dssp             EEEECSC-----CCHHHHHHHHHHHHHHHHHCTTCCEEEEEEECTTEETTEESCTTHHH-----------------HHHH
T ss_pred             EEEECCE-----EcHHHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCcCCCCCCCCHH-----------------HHHH
Confidence            4556654     89999999999999887543223  3334444411    00002221                 1234


Q ss_pred             HHHHHHhcCCeEEEEecCceecccccccccCc--eEEEeCCeeeeccccccCc----cCCchh-HHHHhhcc--------
Q 016290           98 LCHHIHTYKKTQVALAHGITMGGGASLMVPLK--FSVVTEKTVFSTPEASIGF----HTDCGF-SFIHSRLP--------  162 (392)
Q Consensus        98 l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d--~riate~a~f~~PE~~iGl----~P~~G~-s~~L~rl~--------  162 (392)
                      +...|..++.||...+.|.|.+.|.-|+++++  .|++.+++++.+-...-|+    ..|.-- .-.|-+.-        
T Consensus        88 Iyd~m~~~~~~V~t~~~G~AaS~as~il~aG~~gkR~~lP~a~iMIHqP~~~~~~G~a~di~i~a~el~~~~~~i~~iya  167 (205)
T 4gm2_A           88 IVDVINYISSDVYTYCLGKAYGIACILASSGKKGYRFSLKNSSFCLNQSYSIIPFNQATNIEIQNKEIMNTKKKVIEIIS  167 (205)
T ss_dssp             HHHHHHHSSSCEEEEEEEEEETHHHHHHTTSCTTCEEECTTCEEEECCCCCCCCSSCCSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCCEEEEEEeeehhHHHHHHhcCCCCCEEecCCCEEEEecCcccccccCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66677888999999999999999999999998  5999999988876555443    122110 01122211        


Q ss_pred             ---h---HHHHHHhhcCCcccHHHHHHcCccceecCCC
Q 016290          163 ---G---HLGEFLALTGARLNGKELVAAGLATHFVPSE  194 (392)
Q Consensus       163 ---G---~~a~~L~ltG~~l~a~eA~~~GLv~~vv~~~  194 (392)
                         |   ..-..++-....++|+||++.||+|+|+.++
T Consensus       168 ~~TG~~~e~I~~~m~rd~~msa~EA~eyGlID~V~~~e  205 (205)
T 4gm2_A          168 KNTEKDTNVISNVLERDKYFNADEAVDFKLIDHILEKE  205 (205)
T ss_dssp             HHHTCCHHHHHHHTTSCEEEEHHHHHHTTSCSEECCC-
T ss_pred             HHhCCCHHHHHHHhcCCcccCHHHHHHcCCccEeecCC
Confidence               1   1122222334459999999999999999764

>1pix_A Glutaconyl-COA decarboxylase A subunit; biotin-dependent ION pump, carboxyltransferase, lyase; 2.20A {Acidaminococcus fermentans} SCOP: c.14.1.4 c.14.1.4

Probab=97.75  E-value=2.9e-05  Score=80.23  Aligned_cols=155  Identities=9%  Similarity=0.053  Sum_probs=100.0

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhHHHHHHHHHHHHHH
Q 016290           22 VRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYWLCHH  101 (392)
Q Consensus        22 v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~~~~~~~~~l~~~  101 (392)
                      |.++..+..-..-++++...+.+..+++.+.+. .+-+|.|.-     |+|+.+.+-.............    +.-+..
T Consensus       107 v~v~a~D~t~~gGs~g~~~~~Ki~r~~e~A~~~-~lPvI~l~d-----SgGArlqe~~~~l~~~~~~g~i----~~~~~~  176 (587)
T 1pix_A          107 CVVVASDNKKLAGAWVPGQAECLLRASDTAKTL-HVPLVYVLN-----CSGVKFDEQEKVYPNRRGGGTP----FFRNAE  176 (587)
T ss_dssp             EEEEEECTTTTTTEECTTHHHHHHHHHHHHHHH-TCCEEEEEC-----CCEECGGGHHHHSSSTTSTTHH----HHHHHH
T ss_pred             EEEEEECCccccCCCCHHHHHHHHHHHHHHHHc-CCCEEEEEe-----CCCCCccccchhccccccHHHH----HHHHHH
Confidence            333444444455688899999999999988876 567777765     4455554322110000001112    223455


Q ss_pred             HHhcCCeEEEEecCceecccccccccCceEEEeCC-eeeec--cccccCccCCchhHHHHhhcch-HHHHHHh-hcCCcc
Q 016290          102 IHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEK-TVFST--PEASIGFHTDCGFSFIHSRLPG-HLGEFLA-LTGARL  176 (392)
Q Consensus       102 i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~-a~f~~--PE~~iGl~P~~G~s~~L~rl~G-~~a~~L~-ltG~~l  176 (392)
                      +.....|+|+++.|.|.|||+-. ..||++|++++ +.+++  |++--++-|       . -..+ ..+..++ .||+.+
T Consensus       177 ls~~giP~Isvv~G~~~GGga~~-a~~d~vim~e~~a~i~~~GP~vi~~~~~-------~-~~~d~~~A~el~~~tge~v  247 (587)
T 1pix_A          177 LNQLGIPVIVGIYGTNPAGGGYH-SISPTVIIAHEKANMAVGGAGIMGGMNP-------K-GHVDLEYANEIADMVDRTG  247 (587)
T ss_dssp             HHHTTCCEEEEECSEEETHHHHH-HHSSSEEEEETTCEEESCCCTTCCSCCS-------S-SSCCHHHHHHHHHHHHTTC
T ss_pred             HhCCCCCEEEEEecCCcHHHHHH-HhcCceEEecCCcEEEecCHHHHhhhcc-------c-cccchhHHHHHHHHhCCcc
Confidence            67889999999999999999999 88999998875 77776  211111000       0 0134 7888888 888876


Q ss_pred             c-----HHHHH--HcCccceecCCCC
Q 016290          177 N-----GKELV--AAGLATHFVPSEK  195 (392)
Q Consensus       177 ~-----a~eA~--~~GLv~~vv~~~~  195 (392)
                      +     +.+.+  ..|++|+++++++
T Consensus       248 ~~e~lgga~~h~~~~GvvD~vv~~e~  273 (587)
T 1pix_A          248 KTEPPGAVDIHYTETGFMREVYASEE  273 (587)
T ss_dssp             CCCCSSBHHHHTTTSCCSCEEESSHH
T ss_pred             ChhhcccHHHHHhhcCceeEecCCHH
Confidence            5     44544  5899999998865

>2f9i_B Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta; zinc ribbon, crotonase superfamily, spiral domain; 1.98A {Staphylococcus aureus}

Probab=97.69  E-value=0.0013  Score=61.96  Aligned_cols=154  Identities=8%  Similarity=0.053  Sum_probs=96.5

Q ss_pred             EeCCEEEEEEcCCC-CCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhHHH--HHHH
Q 016290           18 EIGNVRLVTLNRPR-QLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLE--VVYR   94 (392)
Q Consensus        18 ~~~~v~~itLnrp~-~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~~--~~~~   94 (392)
                      .+|.-..|.-|.+. ..-+++....+.+.++++.+.+. .+-+|.|.-+|++     -..         +....  -...
T Consensus       118 I~G~~V~v~a~d~~~~gGs~g~~~~~K~~r~ie~A~~~-~lPlI~l~dsgGa-----r~q---------EGi~sl~q~ak  182 (285)
T 2f9i_B          118 LDGMKFGVAVMDSRFRMGSMGSVIGEKICRIIDYCTEN-RLPFILFSASGGA-----RMQ---------EGIISLMQMGK  182 (285)
T ss_dssp             ETTEEEEEEEECTTTGGGCCCHHHHHHHHHHHHHHHHT-TCCEEEEEEECSC-----CGG---------GHHHHHHHHHH
T ss_pred             ECCEEEEEEEEccccccCcCCHHHHHHHHHHHHHHHHc-CCCEEEEEeCCCc-----chh---------hhhhhHhHHHH
Confidence            34533333344443 44689999999999999988875 5778888765443     111         11111  1233


Q ss_pred             HHHHHHHHHhcCCeEEEEecCceecccccc-cccCceEEEeCCeeeeccccccCccCCchhHHHHhhcchHHHHHHhhcC
Q 016290           95 MYWLCHHIHTYKKTQVALAHGITMGGGASL-MVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHLGEFLALTG  173 (392)
Q Consensus        95 ~~~l~~~i~~~~kP~IA~v~G~a~GgG~~l-al~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G~~a~~L~ltG  173 (392)
                      ....+..+.....|+|+++-|.|.||+... ++.+|+++|.+++.+++--      |.+ ....+.+-.         .-
T Consensus       183 i~~~l~~~s~~~vP~Isvv~g~~~GG~~as~a~~~D~i~a~p~A~i~~aG------P~v-i~~~~~~~~---------~e  246 (285)
T 2f9i_B          183 TSVSLKRHSDAGLLYISYLTHPTTGGVSASFASVGDINLSEPKALIGFAG------RRV-IEQTINEKL---------PD  246 (285)
T ss_dssp             HHHHHHHHHHTTCCEEEEEEEEEEHHHHTTGGGCCSEEEECTTCBEESSC------HHH-HHHHHTSCC---------CT
T ss_pred             HHHHHHHHHcCCCCEEEEEeCCccHHHHHHhhhCCCEEEEeCCcEEEEcC------HHH-HHHHhcccc---------hH
Confidence            344566677789999999999999998554 7899999988887665511      221 111111110         10


Q ss_pred             CcccHHHHHHcCccceecCCCChHHHHHH
Q 016290          174 ARLNGKELVAAGLATHFVPSEKLPELEKR  202 (392)
Q Consensus       174 ~~l~a~eA~~~GLv~~vv~~~~l~~~~~~  202 (392)
                      .--+++.+.+.|++|.+|+++++.+...+
T Consensus       247 ~~~~Ae~~~~~G~iD~Iv~~~e~r~~l~~  275 (285)
T 2f9i_B          247 DFQTAEFLLEHGQLDKVVHRNDMRQTLSE  275 (285)
T ss_dssp             TTTBHHHHHHTTCCSEECCGGGHHHHHHH
T ss_pred             hHhhHHHHHhcCCccEEeChHHHHHHHHH
Confidence            11146777789999999998766544333

>3bf0_A Protease 4; bacterial, hydrolase, inner membrane, membrane, transmembrane; 2.55A {Escherichia coli} PDB: 3bez_A

Probab=97.54  E-value=0.00028  Score=73.49  Aligned_cols=87  Identities=9%  Similarity=-0.015  Sum_probs=65.8

Q ss_pred             HHHHHHHHHHHHhhCCCceEEEEEcCCCccccC-CCchhhccCCCCchhHHHHHHHHHHHHHHHHhcCCeEEEEecCcee
Q 016290           40 VVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAG-GDLKMFYDGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITM  118 (392)
Q Consensus        40 m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG-~Dl~~l~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~  118 (392)
                      ....+.+.|+.+..|+.++.|+|.-.    |-| |++...              ...++.+..+....|||||.+++. .
T Consensus        71 ~~~~i~~~L~~a~~d~~ik~I~L~in----spGgG~v~~~--------------~~I~~~i~~~k~~gkpvva~~~~a-a  131 (593)
T 3bf0_A           71 SLFDIVNTIRQAKDDRNITGIVMDLK----NFAGGDQPSM--------------QYIGKALKEFRDSGKPVYAVGENY-S  131 (593)
T ss_dssp             EHHHHHHHHHHHHHCTTCCCEEEECT----EEEECCHHHH--------------HHHHHHHHHHHHTTCCEEEEESCE-E
T ss_pred             CHHHHHHHHHHHHhCCCceEEEEEeC----CCCCCcHHHH--------------HHHHHHHHHHHhcCCeEEEEEccc-h
Confidence            46788899999999999999999754    344 555432              223455555566679999999874 5


Q ss_pred             cccccccccCceEEEeCCeeeeccccc
Q 016290          119 GGGASLMVPLKFSVVTEKTVFSTPEAS  145 (392)
Q Consensus       119 GgG~~lal~~d~riate~a~f~~PE~~  145 (392)
                      -||.-|+++||.+++.+.+.++..-..
T Consensus       132 s~~y~lAsaad~i~~~P~~~vg~~g~~  158 (593)
T 3bf0_A          132 QGQYYLASFANKIWLSPQGVVDLHGFA  158 (593)
T ss_dssp             HHHHHHHTTSSEEEECTTCCEECCCCB
T ss_pred             hHHHHHHHhCCEEEECCCceEEEeccc
Confidence            577899999999999999888776554

>3iav_A Propionyl-COA carboxylase complex B subunit; accase, pccase, ACC, PCC, CT, carboxyltransfe polyketide, fatty acid, PKS, FAS; 1.75A {Streptomyces coelicolor} PDB: 1xnw_A 3ib9_A* 3ibb_A 3mfm_C 1xny_A* 1xnv_A* 1xo6_A

Probab=97.49  E-value=0.002  Score=65.68  Aligned_cols=140  Identities=16%  Similarity=0.120  Sum_probs=92.6

Q ss_pred             EeCCEEEEEEcCC-CCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhHHHHHHHHH
Q 016290           18 EIGNVRLVTLNRP-RQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMY   96 (392)
Q Consensus        18 ~~~~v~~itLnrp-~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~~~~~~~~   96 (392)
                      .+|.-..|.-|.+ -..-++.....+.+..+++.+.+. .+-+|.|.-+|     |+-+.+   +   -..+..    .-
T Consensus        94 I~Gr~v~v~a~D~tv~gGS~g~~~~~Ki~ra~e~A~~~-~lP~I~l~dSg-----GaRmqE---g---~~~l~~----~~  157 (530)
T 3iav_A           94 VDGRPVAVFSQDFTVFGGALGEVYGQKIVKVMDFALKT-GCPVVGINDSG-----GARIQE---G---VASLGA----YG  157 (530)
T ss_dssp             ETTEEEEEEEECTTSGGGCBCHHHHHHHHHHHHHHHHH-TCCEEEEECCC-----SBCGGG---T---HHHHHH----HH
T ss_pred             ECCEEEEEEEECCCcceEeccHHHHHHHHHHHHHHHHc-CCCEEEEEcCC-----Ccchhh---h---hhhHHH----HH
Confidence            4454333444444 356789999999999999988775 57788886644     333322   1   111112    22


Q ss_pred             HHHHHHHhc--CCeEEEEecCceecccccccccCceEEEeCC-eeeeccccccCccCCchhHHHHhhcchHHHHHHhhcC
Q 016290           97 WLCHHIHTY--KKTQVALAHGITMGGGASLMVPLKFSVVTEK-TVFSTPEASIGFHTDCGFSFIHSRLPGHLGEFLALTG  173 (392)
Q Consensus        97 ~l~~~i~~~--~kP~IA~v~G~a~GgG~~lal~~d~riate~-a~f~~PE~~iGl~P~~G~s~~L~rl~G~~a~~L~ltG  173 (392)
                      ++++.+..+  ..|+|+++.|.|.|||.-....||++|++++ +.+.+.           |.        ..-.  ..||
T Consensus       158 ~i~~~~~~~s~~iP~Isvv~G~~~GG~a~~~al~D~~im~~~~a~i~~a-----------GP--------~vi~--~~~g  216 (530)
T 3iav_A          158 EIFRRNTHASGVIPQISLVVGPCAGGAVYSPAITDFTVMVDQTSHMFIT-----------GP--------DVIK--TVTG  216 (530)
T ss_dssp             HHHHHHHHTTTTSCEEEEECSEEEGGGGHHHHHSSEEEEETTTCEEESS-----------CH--------HHHH--HHHC
T ss_pred             HHHHHHHHHcCCCCEEEEEecCcchHHHHHHHhCCEEEEecCCcEEEec-----------CH--------HHHH--HHhC
Confidence            333333332  3899999999999999988889999999985 776652           11        1111  2578


Q ss_pred             CcccHHHH-------HHcCccceecCCC
Q 016290          174 ARLNGKEL-------VAAGLATHFVPSE  194 (392)
Q Consensus       174 ~~l~a~eA-------~~~GLv~~vv~~~  194 (392)
                      +.+++++.       ...|+++++++++
T Consensus       217 e~v~~e~LGGa~~h~~~sGv~d~va~de  244 (530)
T 3iav_A          217 EDVGFEELGGARTHNSTSGVAHHMAGDE  244 (530)
T ss_dssp             CCCCHHHHHBHHHHHHTSCCCSEEESSH
T ss_pred             CcCChhhcchHHHHHhccCceeEEecCh
Confidence            88887765       5799999999875

>3n6r_B Propionyl-COA carboxylase, beta subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Roseobacter denitrificans}

Probab=97.38  E-value=0.0019  Score=65.85  Aligned_cols=149  Identities=13%  Similarity=0.056  Sum_probs=95.3

Q ss_pred             EeCCEEEEEEcCC-CCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhHHHHHHHHH
Q 016290           18 EIGNVRLVTLNRP-RQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMY   96 (392)
Q Consensus        18 ~~~~v~~itLnrp-~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~~~~~~~~   96 (392)
                      .+|.-..|.-+.. -..-++.....+.+..+++.+.+. .+-+|.|.-+     +|+.+.+-      -..+..+    -
T Consensus       102 I~Gr~v~v~a~D~t~~gGS~g~~~~~Ki~ra~e~A~~~-~lPvI~l~dS-----GGARmqeg------~~sl~~~----~  165 (531)
T 3n6r_B          102 INGRVVYVFSQDFTVLGGSVSETHSKKICKIMDMAMQN-GAPVIGINDS-----GGARIQEG------VDSLAGY----G  165 (531)
T ss_dssp             ETTEEEEEEEECTTSGGGCBCHHHHHHHHHHHHHHHHH-TCCEEEEECC-----CCBCGGGT------HHHHHHH----H
T ss_pred             ECCEEEEEEEECCCcccccccHHHHHHHHHHHHHHHHc-CCCEEEEeCC-----CccccCcc------cchhhhH----H
Confidence            3443333444443 355789999999999999988775 5677887654     34444321      1111111    1


Q ss_pred             HHHHHHHh--cCCeEEEEecCceecccccccccCceEEEeCC-eeeeccccccCccCCchhHHHHhhcchHHHHHHhhcC
Q 016290           97 WLCHHIHT--YKKTQVALAHGITMGGGASLMVPLKFSVVTEK-TVFSTPEASIGFHTDCGFSFIHSRLPGHLGEFLALTG  173 (392)
Q Consensus        97 ~l~~~i~~--~~kP~IA~v~G~a~GgG~~lal~~d~riate~-a~f~~PE~~iGl~P~~G~s~~L~rl~G~~a~~L~ltG  173 (392)
                      +.++.+..  -..|+|+++.|.|.|||.-....||++|++++ +.+.+           +|.    |+     .. ..||
T Consensus       166 ~i~~~~~~~s~~iP~Isvv~Gp~~GG~a~s~a~~D~vi~~~~~a~i~~-----------aGP----~v-----I~-~~~g  224 (531)
T 3n6r_B          166 EVFQRNIMASGVVPQISMIMGPCAGGAVYSPAMTDFIFMVKDSSYMFV-----------TGP----DV-----VK-TVTN  224 (531)
T ss_dssp             HHHHHHHHTTTTSCEEEEECSCCBGGGGHHHHHSSEEEEETTTCBCBS-----------SCH----HH-----HH-HHHC
T ss_pred             HHHHHHHHHhCCCCEEEEEeCCcchHHHHHhhhCCEEEEecCCceEee-----------cCH----HH-----HH-HHhC
Confidence            22222222  34899999999999999987778999999985 55443           111    11     11 2688


Q ss_pred             CcccHHHH-------HHcCccceecCCCC-hHHHHHHH
Q 016290          174 ARLNGKEL-------VAAGLATHFVPSEK-LPELEKRL  203 (392)
Q Consensus       174 ~~l~a~eA-------~~~GLv~~vv~~~~-l~~~~~~l  203 (392)
                      +.+++++.       ...|++|.+++++. ..+.++++
T Consensus       225 e~v~~E~LGGa~~h~~~sG~~d~v~~~e~~a~~~~r~l  262 (531)
T 3n6r_B          225 EQVSAEELGGATTHTRKSSVADAAFENDVEALAEVRRL  262 (531)
T ss_dssp             CCCCHHHHHBHHHHHHTTSCCSEEESSHHHHHHHHHHH
T ss_pred             CccChhhcchHHHHhhccCcceEEeCCHHHHHHHHHHH
Confidence            99999988       88999999998753 33334444

>1on3_A Methylmalonyl-COA carboxyltransferase 12S subunit; domain duplication, multienzyme complex, transcarboxylase; HET: MCA; 1.90A {Propionibacterium freudenreichii} SCOP: c.14.1.4 c.14.1.4 PDB: 1on9_A*

Probab=97.28  E-value=0.0032  Score=64.33  Aligned_cols=153  Identities=14%  Similarity=0.096  Sum_probs=95.2

Q ss_pred             EeCCEEEEEEcCC-CCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhHHHHHHHHH
Q 016290           18 EIGNVRLVTLNRP-RQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMY   96 (392)
Q Consensus        18 ~~~~v~~itLnrp-~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~~~~~~~~   96 (392)
                      .+|.-..|.-+.. =..-++.....+.+..+++.+.+. .+-+|.|..     |+|+.+.+-.      ..+..+-+..+
T Consensus        92 I~Gr~v~v~a~D~t~~gGS~g~~~~~Ki~ra~e~A~~~-~lP~I~l~~-----SGGARmqeg~------~sl~~~~~i~~  159 (523)
T 1on3_A           92 ILGRPVHAASQDFTVMGGSAGETQSTKVVETMEQALLT-GTPFLFFYD-----SGGARIQEGI------DSLSGYGKMFF  159 (523)
T ss_dssp             ETTEEEEEEEECTTTGGGCBCHHHHHHHHHHHHHHHHH-TCCEEEEEE-----ECSBCGGGTH------HHHHHHHHHHH
T ss_pred             ECCEEEEEEEEcCCccCCcCcHHHHHHHHHHHHHHHHc-CCCEEEEEc-----CCCCChhhHH------HHHHHHHHHHH
Confidence            3443333333433 356789999999999999988775 567888876     4455543311      11122222122


Q ss_pred             HHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcchHHHHHHhhcCCcc
Q 016290           97 WLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHLGEFLALTGARL  176 (392)
Q Consensus        97 ~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G~~a~~L~ltG~~l  176 (392)
                      .+. .+ .-..|+|+++.|+|.||+.-....||++|+++++.+++.           |.    |+     .. ..||+.+
T Consensus       160 ~~~-~~-s~~iP~Isvv~gp~~GG~a~s~~l~D~ii~~~~a~i~~a-----------GP----~v-----I~-~~~ge~~  216 (523)
T 1on3_A          160 ANV-KL-SGVVPQIAIIAGPCAGGASYSPALTDFIIMTKKAHMFIT-----------GP----QV-----IK-SVTGEDV  216 (523)
T ss_dssp             HHH-HH-TTTSCEEEEEEEEEESGGGHHHHHSSEEEEETTCEEESS-----------CH----HH-----HH-HHHCCCC
T ss_pred             HHH-Hh-cCCCCEEEEEcCCCchHHHHHHhhCCeEEEeCCCEEEec-----------CH----HH-----HH-HHhCCcC
Confidence            222 22 334899999999999999998899999999998876554           11    11     11 1456666


Q ss_pred             cH-----HHHH--HcCccceecCCC-ChHHHHHHHHh
Q 016290          177 NG-----KELV--AAGLATHFVPSE-KLPELEKRLIG  205 (392)
Q Consensus       177 ~a-----~eA~--~~GLv~~vv~~~-~l~~~~~~l~~  205 (392)
                      +.     .+.+  ..|++|.+++++ ++.+...++..
T Consensus       217 ~~e~lggae~h~~~~G~vd~vv~d~~~~~~~~r~lL~  253 (523)
T 1on3_A          217 TADELGGAEAHMAISGNIHFVAEDDDAAELIAKKLLS  253 (523)
T ss_dssp             CHHHHHSHHHHHHTTCCCSEEESSHHHHHHHHHHHHH
T ss_pred             ChHhcccHHHHhhccCceEEEeCCHHHHHHHHHHHHH
Confidence            64     4444  589999999864 34444444433

>2bzr_A Propionyl-COA carboxylase beta chain 5; fatty acid biosynthesis, accase, ligase, transferase; 2.2A {Mycobacterium tuberculosis} PDB: 2a7s_A

Probab=97.19  E-value=0.0057  Score=62.71  Aligned_cols=151  Identities=13%  Similarity=0.036  Sum_probs=94.8

Q ss_pred             EeCCEEEEEEcCC-CCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhHHHHHHHHH
Q 016290           18 EIGNVRLVTLNRP-RQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMY   96 (392)
Q Consensus        18 ~~~~v~~itLnrp-~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~~~~~~~~   96 (392)
                      .+|.-..|.-+.. -..-++.....+.+..+++.+.+. .+-+|.|.-     |+|+.+.+-.      ..+..+    -
T Consensus       105 I~Gr~v~v~a~D~t~~gGS~g~~~~~Ki~ra~e~A~~~-~lP~I~l~d-----SGGARmqeg~------~sl~~~----~  168 (548)
T 2bzr_A          105 IDGRDVCIFSQDATVFGGSLGEVYGEKIVKVQELAIKT-GRPLIGIND-----GAGARIQEGV------VSLGLY----S  168 (548)
T ss_dssp             ETTEEEEEEEECTTSGGGCCCHHHHHHHHHHHHHHHHH-TCCEEEEEC-----CCSCCGGGTT------HHHHHH----H
T ss_pred             ECCEEEEEEEEcCccccCCCChhHHHHHHHHHHHHHHc-CCCEEEEEc-----CCCCCchhHH------HHHHHH----H
Confidence            3443333444444 356789999999999999988775 677888876     4455554321      111222    2


Q ss_pred             HHHHHHHh--cCCeEEEEecCceecccccccccCceEEEeCC-eeeeccccccCccCCchhHHHHhhcchHHHHHHhhcC
Q 016290           97 WLCHHIHT--YKKTQVALAHGITMGGGASLMVPLKFSVVTEK-TVFSTPEASIGFHTDCGFSFIHSRLPGHLGEFLALTG  173 (392)
Q Consensus        97 ~l~~~i~~--~~kP~IA~v~G~a~GgG~~lal~~d~riate~-a~f~~PE~~iGl~P~~G~s~~L~rl~G~~a~~L~ltG  173 (392)
                      ++++.+..  -..|+|+++.|+|.||+.-....||++|++++ +.+++.      -|.+     +         . ..||
T Consensus       169 ~i~~~~~~~s~~iP~Isvv~gp~~GG~a~s~al~D~ii~~~~~a~i~~a------GP~v-----I---------~-~~~g  227 (548)
T 2bzr_A          169 RIFRNNILASGVIPQISLIMGAAAGGHVYSPALTDFVIMVDQTSQMFIT------GPDV-----I---------K-TVTG  227 (548)
T ss_dssp             HHHHHHHHTTTTSCEEEEECSEEESGGGHHHHHSSEEEEETTTCEEESS------CHHH-----H---------H-HHHC
T ss_pred             HHHHHHHHhcCCCcEEEEecCCCchHHHHHHHhCCeEEeccCceeEEec------cHHH-----H---------H-HHhC
Confidence            23333333  34899999999999999988889999999986 765543      0111     1         1 1456


Q ss_pred             CcccH-----HHHH--HcCccceecCCC-ChHHHHHHHHh
Q 016290          174 ARLNG-----KELV--AAGLATHFVPSE-KLPELEKRLIG  205 (392)
Q Consensus       174 ~~l~a-----~eA~--~~GLv~~vv~~~-~l~~~~~~l~~  205 (392)
                      +.++.     .+.+  ..|++|++++++ +..+...++..
T Consensus       228 e~v~~e~lggae~h~~~sG~~d~vv~d~~~~~~~~r~lls  267 (548)
T 2bzr_A          228 EEVTMEELGGAHTHMAKSGTAHYAASGEQDAFDYVRELLS  267 (548)
T ss_dssp             CCCCHHHHHBHHHHHHTSSCCSEEESSHHHHHHHHHHHHT
T ss_pred             CcCChHhcccHHHHhhccCceeEEeCCHHHHHHHHHHHHH
Confidence            66664     4444  589999999854 34444444433

>1x0u_A Hypothetical methylmalonyl-COA decarboxylase ALPH; lyase; 2.20A {Sulfolobus tokodaii}

Probab=97.17  E-value=0.0056  Score=62.50  Aligned_cols=151  Identities=15%  Similarity=0.046  Sum_probs=93.7

Q ss_pred             EeCCEEEEEEcCCC-CCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhHHHHHHHHH
Q 016290           18 EIGNVRLVTLNRPR-QLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMY   96 (392)
Q Consensus        18 ~~~~v~~itLnrp~-~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~~~~~~~~   96 (392)
                      .+|.-..|.-+... ..-++.....+.+..+++.+.+. .+-+|.|..     |+|+.+.+-.      ..+..+-+..+
T Consensus        88 i~Gr~v~v~a~D~t~~gGS~g~~~~~Ki~ra~e~A~~~-~~P~I~l~~-----SGGaRmqeg~------~sl~~~~~i~~  155 (522)
T 1x0u_A           88 VDGRTVFAYAQDFTVLGGSLGETHANKIVRAYELALKV-GAPVVGIND-----SGGARIQEGA------LSLEGYGAVFK  155 (522)
T ss_dssp             ETTEEEEEEEECTTTGGGCBCHHHHHHHHHHHHHHHHH-TCCEEEEEC-----CCSBCGGGTH------HHHHHHHHHHH
T ss_pred             ECCEEEEEEEecCceeCccccHHHHHHHHHHHHHHHHc-CCCEEEEEc-----CCCCChhHHH------HHHHHHHHHHH
Confidence            34543344444443 55689999999999999988775 677888876     4455543321      11122222122


Q ss_pred             HHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCC-e-eeeccccccCccCCchhHHHHhhcchHHHHHHhhcCC
Q 016290           97 WLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEK-T-VFSTPEASIGFHTDCGFSFIHSRLPGHLGEFLALTGA  174 (392)
Q Consensus        97 ~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~-a-~f~~PE~~iGl~P~~G~s~~L~rl~G~~a~~L~ltG~  174 (392)
                      .+. .+ .-..|+|+++.|+|.||+......||++|++++ + .+++           +|...+-          ..||+
T Consensus       156 ~~~-~~-s~~iP~Isvv~gp~~GG~a~s~~l~D~~i~~~~~a~~i~~-----------aGP~vI~----------~~~ge  212 (522)
T 1x0u_A          156 MNV-MA-SGVIPQITIMAGPAAGGAVYSPALTDFIIMIKGDAYYMFV-----------TGPEITK----------VVLGE  212 (522)
T ss_dssp             HHH-HH-TTTSCEEEEECSEEEGGGGHHHHHSSEEEEECSTTCEEES-----------SCHHHHH----------HTTCC
T ss_pred             HHH-Hh-CCCCcEEEEEcCCCchHHHHHHhcCCeEEEecCCccEEEe-----------cCHHHHH----------HHhCC
Confidence            222 22 334899999999999999998899999999987 6 5544           1111111          14666


Q ss_pred             cccH-----HHHH--HcCccceecCCC-ChHHHHHHH
Q 016290          175 RLNG-----KELV--AAGLATHFVPSE-KLPELEKRL  203 (392)
Q Consensus       175 ~l~a-----~eA~--~~GLv~~vv~~~-~l~~~~~~l  203 (392)
                      .++.     .+.+  ..|++|.+++++ ++.+...++
T Consensus       213 ~~~~e~lggae~~~~~~G~~d~vv~~~~~~~~~~~~l  249 (522)
T 1x0u_A          213 EVSFQDLGGAVVHATKSGVVHFMVDSEQEAINLTKRL  249 (522)
T ss_dssp             CCCHHHHHBHHHHHHTTCCCSEEESCHHHHHHHHHHH
T ss_pred             cCChhhcchHHHHhhcCceeEEEeCCHHHHHHHHHHH
Confidence            6664     4444  589999999864 343333333

>3u9r_B MCC beta, methylcrotonyl-COA carboxylase, beta-subunit; carboxyltransferase, beta-BETA-alpha superhelix, ligase; HET: 1PE; 1.50A {Pseudomonas aeruginosa} PDB: 3u9s_B* 3u9t_B

Probab=96.94  E-value=0.0048  Score=63.19  Aligned_cols=144  Identities=16%  Similarity=0.117  Sum_probs=93.0

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhHHHHHHHHHHHHHH
Q 016290           22 VRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYWLCHH  101 (392)
Q Consensus        22 v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~~~~~~~~~l~~~  101 (392)
                      |.++..+..-+.-++.+...+.+..+++.+.+. .+-+|.|.-+|++..... - +......   .....|    .-+..
T Consensus       123 v~V~a~D~tv~gGS~g~~~~~Ki~ra~e~A~~~-~lPvI~l~dSgGARl~~q-~-~~~~~~~---~~~~i~----~~~~~  192 (555)
T 3u9r_B          123 CMIVGNDATVKGGTYYPLTVKKHLRAQAIALEN-RLPCIYLVDSGGANLPRQ-D-EVFPDRE---HFGRIF----FNQAN  192 (555)
T ss_dssp             EEEEEECTTTGGGCBCHHHHHHHHHHHHHHHHH-TCCEEEEECCCCBCGGGG-G-GTSSSTT---STTHHH----HHHHH
T ss_pred             EEEEEECCccccCCCCHHHHHHHHHHHHHHHHc-CCCEEEEECCCCCCCCCc-c-eeecccc---cHHHHH----HHHHH
Confidence            333444444456788999999999999988876 567887766554443110 0 0100000   011222    22334


Q ss_pred             HHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcchHHHHHHhhcCCcccHHHH
Q 016290          102 IHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHLGEFLALTGARLNGKEL  181 (392)
Q Consensus       102 i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G~~a~~L~ltG~~l~a~eA  181 (392)
                      +.....|+|+++.|.|.|||.-....||++|+.++.      ..||+    +|..    +     .. ..||+.+++++.
T Consensus       193 ls~~giP~Isvv~G~~~GGga~~~a~~d~vim~e~~------a~i~~----aGP~----v-----ik-~~~ge~~~~e~L  252 (555)
T 3u9r_B          193 MSARGIPQIAVVMGSCTAGGAYVPAMSDETVMVREQ------ATIFL----AGPP----L-----VK-AATGEVVSAEEL  252 (555)
T ss_dssp             HHHTTCCEEEEECSCCBGGGGHHHHTSSEEEEETTT------CBCBS----SCHH----H-----HH-HHHCCCCCHHHH
T ss_pred             HhcCCCCEEEEEecCCCccHHHHHHhCCceEEecCC------ceEEE----ccHH----H-----HH-HHhcCccChhhc
Confidence            566789999999999999999998999999887742      23443    1111    1     11 268899999888


Q ss_pred             -------HHcCccceecCCCC
Q 016290          182 -------VAAGLATHFVPSEK  195 (392)
Q Consensus       182 -------~~~GLv~~vv~~~~  195 (392)
                             ...|++|.++++++
T Consensus       253 GGa~~h~~~sGv~d~v~~de~  273 (555)
T 3u9r_B          253 GGADVHCKVSGVADHYAEDDD  273 (555)
T ss_dssp             HBHHHHHHTTCSCSEEESSHH
T ss_pred             cchhhhhhccCceeEEeCCHH
Confidence                   78999999998755

>1vrg_A Propionyl-COA carboxylase, beta subunit; TM0716, structural joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE; 2.30A {Thermotoga maritima} SCOP: c.14.1.4 c.14.1.4

Probab=96.51  E-value=0.027  Score=57.47  Aligned_cols=153  Identities=13%  Similarity=0.082  Sum_probs=91.9

Q ss_pred             EeCC-EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhHHHHHHHHH
Q 016290           18 EIGN-VRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMY   96 (392)
Q Consensus        18 ~~~~-v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~~~~~~~~   96 (392)
                      .+|. |.++..+-.-+.-++.....+.+..+++.+.+. .+-+|.|.-+|++.     +.+-.      ..+..+-+..+
T Consensus        95 i~Gr~v~v~a~D~t~~gGS~g~~~~~Ki~r~~e~A~~~-~lPvI~l~dSgGAR-----~qeg~------~~l~g~~~~~~  162 (527)
T 1vrg_A           95 INGRKVAVFSQDFTVMGGSLGEMHAKKIVKLLDLALKM-GIPVIGINDSGGAR-----IQEGV------DALAGYGEIFL  162 (527)
T ss_dssp             ETTEEEEEEEECTTTGGGCBCHHHHHHHHHHHHHHHHH-TCCEEEEEEECSBC-----GGGTH------HHHHHHHHHHH
T ss_pred             ECCEEEEEEEEeccccCccccHHHHHHHHHHHHHHHHc-CCCEEEEECCCCCC-----ccchh------HHHHHHHHHHH
Confidence            3443 333344433356789999999999999988775 56677776544333     32110      11111111112


Q ss_pred             HHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCC-eeeeccccccCccCCchhHHHHhhcchHHHHHHhhcCCc
Q 016290           97 WLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEK-TVFSTPEASIGFHTDCGFSFIHSRLPGHLGEFLALTGAR  175 (392)
Q Consensus        97 ~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~-a~f~~PE~~iGl~P~~G~s~~L~rl~G~~a~~L~ltG~~  175 (392)
                      ++ . ...-..|+|+++.|.|.|||.-....||++|++++ +.       ||+.    |...+..          .||+.
T Consensus       163 ~~-~-~~s~~iP~Isvv~Gp~~GG~a~s~al~D~vi~~~~~a~-------i~~a----GP~vi~~----------~~ge~  219 (527)
T 1vrg_A          163 RN-T-LASGVVPQITVIAGPCAGGAVYSPALTDFIVMVDQTAR-------MFIT----GPNVIKA----------VTGEE  219 (527)
T ss_dssp             HH-H-HHTTTSCEEEEEEEEEBGGGGHHHHHSSEEEEETTTCB-------CBSS----CHHHHHH----------HHCCC
T ss_pred             HH-H-HhCCCCCEEEEEeCCCchHHHHHHHcCCeEEEecCceE-------EEec----CHHHHHH----------HhCCC
Confidence            22 1 22456999999999999999988889999999987 55       3331    1111111          45666


Q ss_pred             ccH-----HHHH--HcCccceecCCC-ChHHHHHHHHh
Q 016290          176 LNG-----KELV--AAGLATHFVPSE-KLPELEKRLIG  205 (392)
Q Consensus       176 l~a-----~eA~--~~GLv~~vv~~~-~l~~~~~~l~~  205 (392)
                      ++.     .+.+  ..|++|.+++++ ++.+...++..
T Consensus       220 v~~e~lggae~~~~~~G~vd~vv~d~~~~~~~~~~~Ls  257 (527)
T 1vrg_A          220 ISQEDLGGAMVHNQKSGNAHFLADNDEKAMSLVRTLLS  257 (527)
T ss_dssp             CCHHHHHBHHHHHHTSCCCSEEESSHHHHHHHHHHHHT
T ss_pred             CCccccccHHHHhhcccceEEEecCHHHHHHHHHHHHH
Confidence            654     4444  589999999864 34444444433

>1x0u_A Hypothetical methylmalonyl-COA decarboxylase ALPH; lyase; 2.20A {Sulfolobus tokodaii}

Probab=95.83  E-value=0.017  Score=59.00  Aligned_cols=158  Identities=12%  Similarity=0.049  Sum_probs=97.7

Q ss_pred             EeCCEEEEEEcCCC-CCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhHHHHHHHHH
Q 016290           18 EIGNVRLVTLNRPR-QLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMY   96 (392)
Q Consensus        18 ~~~~v~~itLnrp~-~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~~~~~~~~   96 (392)
                      .+|.-..|.-|+|. ..-+++.+-.+.+.++++.+++ ..+-+|.|.-++.+ ..|-+    .+       ....++..-
T Consensus       322 i~G~~V~via~d~~~~gG~l~~~~~~K~ar~i~~a~~-~~~Plv~l~ds~G~-~~G~~----~E-------~~G~~~~~A  388 (522)
T 1x0u_A          322 IAGNVVGIVANNPEEFGGSIDIDAADKAARFIRFCDA-FNIPLISLVDTPGY-VPGTD----QE-------YKGIIRHGA  388 (522)
T ss_dssp             ETTEEEEEEEECTTTGGGCBCHHHHHHHHHHHHHHHH-TTCCEEEEEEECCB-CCSHH----HH-------HTTHHHHHH
T ss_pred             ECCEEEEEEEECCCccCCCcCHHHHHHHHHHHHHHhh-CCCCEEEEecCCCC-CCchH----HH-------HHHHHHHHH
Confidence            34433344445554 2347999999999999998876 46778888654322 22211    10       011233445


Q ss_pred             HHHHHHHhcCCeEEEEecCceeccccccc----ccCceEEEeCCeeeeccccccCccCCchhHHHHhhcc----------
Q 016290           97 WLCHHIHTYKKTQVALAHGITMGGGASLM----VPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLP----------  162 (392)
Q Consensus        97 ~l~~~i~~~~kP~IA~v~G~a~GgG~~la----l~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~----------  162 (392)
                      ++++.+.....|+|++|-|.+.|||.-..    +.+|+++|.+++.++       +...-|++-.+.|..          
T Consensus       389 k~l~~~~~~~vP~Isvi~g~~~GGg~~~~a~~a~~~D~v~a~p~A~i~-------v~gpegaa~Il~r~~i~~~~d~~~~  461 (522)
T 1x0u_A          389 KMLYAFAEATVPKITVIVRKSYGGAHIAMSIKSLGADLVYAWPTAEIA-------VTGPEGAVRILYRKEIQQASNPDDV  461 (522)
T ss_dssp             HHHHHHHHCCSCEEEEEEEEEEHHHHHHTCCGGGTCSEEEECTTCEEE-------SSCHHHHHHHHTSSSSSSSSSSSSS
T ss_pred             HHHHHHHhCCCCEEEEEeCCcccHHHHHhcccccCCCEEEEeCCCEEE-------ecCHHHHHHHHhhhhhhcccCHHHH
Confidence            67888899999999999999999976333    359998887776554       443334444443331          


Q ss_pred             -hHHHH-HHhhcCCcccHHHHHHcCccceecCCCChHH
Q 016290          163 -GHLGE-FLALTGARLNGKELVAAGLATHFVPSEKLPE  198 (392)
Q Consensus       163 -G~~a~-~L~ltG~~l~a~eA~~~GLv~~vv~~~~l~~  198 (392)
                       -.+.. |--   ..-++..+.+.|++|.||++.++..
T Consensus       462 ~~~l~~~y~~---~~~~~~~~~~~G~iD~II~p~~tR~  496 (522)
T 1x0u_A          462 LKQRIAEYRK---LFANPYWAAEKGLVDDVIEPKDTRR  496 (522)
T ss_dssp             SHHHHHHHHH---HHSSSHHHHHTTSSSEECCGGGHHH
T ss_pred             HHHHHHHHHH---hcCCHHHHHhcCCCcEeECHHHHHH
Confidence             01111 110   1134467899999999999876654

>3gf3_A Glutaconyl-COA decarboxylase subunit A; sodium ION transport, biotin, glutamate fermentation, lyase; HET: COO; 1.75A {Clostridium symbiosum} PDB: 3gf7_A 3glm_A* 3gma_A*

Probab=95.69  E-value=0.067  Score=55.14  Aligned_cols=174  Identities=8%  Similarity=-0.004  Sum_probs=98.4

Q ss_pred             EeCCEEEE-EEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhHHHHHHHHH
Q 016290           18 EIGNVRLV-TLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMY   96 (392)
Q Consensus        18 ~~~~v~~i-tLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~~~~~~~~   96 (392)
                      .+|.-..| -.+..-+.-++++...+.+..+++.+.+. .+-+|.|.-+|+++..  +=.+........   ...|    
T Consensus       103 I~Gr~V~V~a~D~tv~gGS~g~~~~~Ki~Ra~e~A~~~-~lPvI~l~dSgGArl~--~qe~~~~~l~~~---g~if----  172 (588)
T 3gf3_A          103 VDGKWVYIVASDNKKMAGAWVPGQAENLIRCSDAAKMM-HLPLIYLLNCSGVEFP--NQDKVYPNRRGG---GTPF----  172 (588)
T ss_dssp             ETTEEEEEEEECTTSGGGCBCTTHHHHHHHHHHHHHHH-TCCEEEEECCCCBCGG--GHHHHSSSTTST---THHH----
T ss_pred             ECCEEEEEEEECCcccCCCCCHHHHHHHHHHHHHHHHc-CCCEEEEEcCCCcCcc--cccccccchhhH---HHHH----
Confidence            34433333 33433355678899999999999988775 4678888765544441  101111101101   1122    


Q ss_pred             HHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccc--cCccCCchhHHHHhhc--ch-HHHHHHhh
Q 016290           97 WLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEAS--IGFHTDCGFSFIHSRL--PG-HLGEFLAL  171 (392)
Q Consensus        97 ~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~--iGl~P~~G~s~~L~rl--~G-~~a~~L~l  171 (392)
                      .-+..+.....|+|+++-|.|.|||.-.++.+|+.++.+++.+.+.--.  -|+-|.  |.++..-.  +. ..+.+-..
T Consensus       173 ~~~~~ls~~~iP~Isvv~Gp~~gGgAy~a~~~~vim~~~~a~i~~aGP~vI~~~~p~--g~~~~~~~~~~~~~~~ge~~v  250 (588)
T 3gf3_A          173 FRNSELNQLGIPVIVGIYGTNPAGGGYHSISPTILIAHQDANMAVGGAGILSGMNPK--GYIDDEAAEQIIAAQIENSKL  250 (588)
T ss_dssp             HHHHHHHHTTCCEEEEECSEEETHHHHHHHSSSEEEEETTCEEESSCCC-----------------CHHHHHHHHHHHHT
T ss_pred             HHHHHHhcCCCCEEEEEeCCCCchhhhHhhCCeEEEEECCcEEEecChhhhcccCcc--ccccccchhhhhhhhcccccc
Confidence            2234456678999999999999998766888888888888877663322  111110  11111100  01 11111115


Q ss_pred             cCCcccHHHHH--HcCccceecCCCC-hHHHHHHH
Q 016290          172 TGARLNGKELV--AAGLATHFVPSEK-LPELEKRL  203 (392)
Q Consensus       172 tG~~l~a~eA~--~~GLv~~vv~~~~-l~~~~~~l  203 (392)
                      |.+.+.+.+.+  ..|+++++++++. ..+.++++
T Consensus       251 s~eeLGGa~~h~~~sGv~d~~a~de~~al~~~r~~  285 (588)
T 3gf3_A          251 KVPAPGSVPIHYDETGFFREVYQNDLGVIDGIKKY  285 (588)
T ss_dssp             TCCCTTBHHHHTTTSCCSCEEESSHHHHHHHHHHH
T ss_pred             ChhhccchhhhccccccceEEeCCHHHHHHHHHHH
Confidence            77888888888  4899999998764 33334444

>1vrg_A Propionyl-COA carboxylase, beta subunit; TM0716, structural joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE; 2.30A {Thermotoga maritima} SCOP: c.14.1.4 c.14.1.4

Probab=94.55  E-value=0.32  Score=49.53  Aligned_cols=159  Identities=11%  Similarity=0.047  Sum_probs=95.8

Q ss_pred             eCCEEEEEEcCCCC-CCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhHHHHHHHHHH
Q 016290           19 IGNVRLVTLNRPRQ-LNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYW   97 (392)
Q Consensus        19 ~~~v~~itLnrp~~-lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~~~~~~~~~   97 (392)
                      +|....|.=|+|.. .-+++++-.....+.++.+++ .++-+|.|.=.. .|..|-+-.           .....+..-+
T Consensus       328 ~G~~V~via~~~~~~~G~~~~~~~~Kaar~i~~a~~-~~~Plv~lvDtp-G~~~G~~~E-----------~~g~~~~~A~  394 (527)
T 1vrg_A          328 QGKTVGIVANQPSVLAGVLDIDSSDKAARFIRFLDA-FNIPILTFVDTP-GYLPGVAQE-----------HGGIIRHGAK  394 (527)
T ss_dssp             TTEEEEEEEECTTSGGGCBCHHHHHHHHHHHHHHHH-TTCCEEEEEEEC-CBCCCHHHH-----------HTTHHHHHHH
T ss_pred             CCEEEEEEEEcCcccCCCCCHHHHHHHHHHHHHHhh-cCCCeEEEecCC-CCcCchhhH-----------HhHHHHHHHH
Confidence            34333344455542 247999999999999988865 466777764322 222222111           1112233346


Q ss_pred             HHHHHHhcCCeEEEEecCceecccccccc----cCceEEEeCCeeeeccccccCccCCchhHHHHhhcc------h-HHH
Q 016290           98 LCHHIHTYKKTQVALAHGITMGGGASLMV----PLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLP------G-HLG  166 (392)
Q Consensus        98 l~~~i~~~~kP~IA~v~G~a~GgG~~lal----~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~------G-~~a  166 (392)
                      +++.+..+..|+|++|=|.+.|||.--..    .+|+++|.       |...++..+.-|++-.+.|..      . ...
T Consensus       395 ~~~a~~~~~vP~isvI~g~~~gGg~~am~~~~~~~d~~~a~-------p~a~~~Vm~pegaa~Il~r~~~~~~~d~~~~~  467 (527)
T 1vrg_A          395 LLYAYSEATVPKITVILRKAYGGAYIAMGSKHLGADMVLAW-------PSAEIAVMGPEGAANIIFKREIEASSNPEETR  467 (527)
T ss_dssp             HHHHHHHCCSCEEEEEEEEEEHHHHHHTTCGGGTCSEEEEC-------TTCEEESSCHHHHHHHHTHHHHHHSSCHHHHH
T ss_pred             HHHHHhcCCCCEEEEEeCCcccHHHHHhcCCCCCCCEEEEc-------CCCeEEecCHHHHHHHHhhhhhhcccCHHHHH
Confidence            77888999999999999999888753322    26765555       555566665566665665432      1 111


Q ss_pred             HHHh--hcCCcccHHHHHHcCccceecCCCChH
Q 016290          167 EFLA--LTGARLNGKELVAAGLATHFVPSEKLP  197 (392)
Q Consensus       167 ~~L~--ltG~~l~a~eA~~~GLv~~vv~~~~l~  197 (392)
                      ..+.  +.-...++..+.+.|++|.|+++.+..
T Consensus       468 ~~~~~~y~~~~~~p~~~~~~g~iD~II~p~~tR  500 (527)
T 1vrg_A          468 RKLIEEYKQQFANPYIAASRGYVDMVIDPRETR  500 (527)
T ss_dssp             HHHHHHHHHHTSSHHHHHHTTSSSEECCGGGHH
T ss_pred             HHHHHHHHHhhCCHHHHHHcCCCCeeeCHHHHH
Confidence            1111  011135667899999999999986654

>1pix_A Glutaconyl-COA decarboxylase A subunit; biotin-dependent ION pump, carboxyltransferase, lyase; 2.20A {Acidaminococcus fermentans} SCOP: c.14.1.4 c.14.1.4

Probab=94.18  E-value=0.65  Score=47.90  Aligned_cols=144  Identities=14%  Similarity=0.075  Sum_probs=94.3

Q ss_pred             CCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhHHHHHHHHHHHHHHHHhcCCeEEEE
Q 016290           33 LNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVAL  112 (392)
Q Consensus        33 lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IA~  112 (392)
                      .-+|+++-.....+.++..++ .++-+|.|.-. ..|..|-+-.           .....+..-++.+.+..+..|+|++
T Consensus       384 ~G~l~~~~a~Kaarfi~~c~~-~~iPlv~lvDt-pGf~~G~~~E-----------~~Gi~~~gA~~~~a~a~a~vP~itv  450 (587)
T 1pix_A          384 GGKLYRQGLVKMNEFVTLCAR-DRLPIVWIQDT-TGIDVGNDAE-----------KAELLGLGQSLIYSIQTSHIPQFEI  450 (587)
T ss_dssp             TTEECHHHHHHHHHHHHHHHH-TTCCEEEEECC-CEECCSHHHH-----------HTTHHHHHHHHHHHHHTCCCCEEEE
T ss_pred             CCCcCHHHHHHHHHHHHHhhc-CCCCeEEEecC-CCCCCcHHHH-----------HHHHHHHHHHHHHHHHhCCCCEEEE
Confidence            356999999999999987765 56777777543 2344333211           1223445567889999999999999


Q ss_pred             ecCceeccccccccc-----C--ceEEEeCCeeeeccccccCccCCchhHHHHhhcchHH-----------H---HHHh-
Q 016290          113 AHGITMGGGASLMVP-----L--KFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHL-----------G---EFLA-  170 (392)
Q Consensus       113 v~G~a~GgG~~lal~-----~--d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G~~-----------a---~~L~-  170 (392)
                      |=|-+.||| .++++     +  |+++|.       |...+|+...-|++-.+.|..-..           +   ..+. 
T Consensus       451 I~g~~~Ggg-~~am~~~~~~~~~d~~~a~-------p~A~~~Vm~pegaa~Il~r~~~~~~~~~g~~~~~~~~~~~~~~~  522 (587)
T 1pix_A          451 TLRKGTAAA-HYVLGGPQGNDTNAFSIGT-------AATEIAVMNGETAATAMYSRRLAKDRKAGKDLQPTIDKMNNLIQ  522 (587)
T ss_dssp             ECSEEETTH-HHHTTCTTCTTTEEEEEEC-------TTCEEESSCHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred             EcCCCccHH-HHHhcCcccCcccceeeec-------cCCeEecCCHHHHHHHHHhhhhhhhhhcCCChHHHHHHHHHHHH
Confidence            999998887 44554     3  665555       555555665566665555432210           0   0000 


Q ss_pred             -hcCCcccHHHHHHcCccceecCCCChHH
Q 016290          171 -LTGARLNGKELVAAGLATHFVPSEKLPE  198 (392)
Q Consensus       171 -ltG~~l~a~eA~~~GLv~~vv~~~~l~~  198 (392)
                       +. +..++..|.+.|++|.|+++.+...
T Consensus       523 ~y~-~~~~p~~aa~~g~iD~VI~p~~tR~  550 (587)
T 1pix_A          523 AFY-TKSRPKVCAELGLVDEIVDMNKIRG  550 (587)
T ss_dssp             HHH-HTTSHHHHHHHTSSSEECCTTTHHH
T ss_pred             HHH-HhCCHHHHHhcCCCccccCHHHHHH
Confidence             01 1478889999999999999887654

>1on3_A Methylmalonyl-COA carboxyltransferase 12S subunit; domain duplication, multienzyme complex, transcarboxylase; HET: MCA; 1.90A {Propionibacterium freudenreichii} SCOP: c.14.1.4 c.14.1.4 PDB: 1on9_A*

Probab=93.97  E-value=0.17  Score=51.52  Aligned_cols=159  Identities=14%  Similarity=0.053  Sum_probs=97.3

Q ss_pred             eCCEEEEEEcCCCC-CCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhHHHHHHHHHH
Q 016290           19 IGNVRLVTLNRPRQ-LNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYW   97 (392)
Q Consensus        19 ~~~v~~itLnrp~~-lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~~~~~~~~~   97 (392)
                      .|....|.=|+|.. .-+++++-.....+.++.+++ .++-+|.|.-. ..|..|-+-.           .....+..-+
T Consensus       324 ~G~~Vgvian~~~~~~G~~~~~~a~Kaar~i~~~~~-~~iPlv~lvDt-pGf~~G~~~E-----------~~Gi~~~~A~  390 (523)
T 1on3_A          324 NGRSVGIVANQPSVMSGCLDINASDKAAEFVNFCDS-FNIPLVQLVDV-PGFLPGVQQE-----------YGGIIRHGAK  390 (523)
T ss_dssp             TTEEEEEEEECTTSGGGCBCHHHHHHHHHHHHHHHH-TTCCEEEEEEE-CCBCCCHHHH-----------HTTHHHHHHH
T ss_pred             CCEEEEEEEecCCccCCCCCHHHHHHHHHHHHHHHh-cCCCeEEEEeC-CCcCcchHHH-----------HhhHHHHHHH
Confidence            34333344455542 247999999999999988865 46667766432 2233333211           1123344567


Q ss_pred             HHHHHHhcCCeEEEEecCceeccccccccc----CceEEEeCCeeeeccccccCccCCchhHHHHhhcchHH----HHHH
Q 016290           98 LCHHIHTYKKTQVALAHGITMGGGASLMVP----LKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHL----GEFL  169 (392)
Q Consensus        98 l~~~i~~~~kP~IA~v~G~a~GgG~~lal~----~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G~~----a~~L  169 (392)
                      +++.+..+..|+|++|=|.+.|||+--...    +|+++|       +|...++..+.-|++-.+.|-.-..    +..+
T Consensus       391 ~l~a~a~~~vP~itvI~g~~~Ggg~~am~~~~~~~d~~~a-------~p~a~~~Vm~pegaa~Il~r~~~~~~~d~~~~~  463 (523)
T 1on3_A          391 MLYAYSEATVPKITVVLRKAYGGSYLAMCNRDLGADAVYA-------WPSAEIAVMGAEGAANVIFRKEIKAADDPDAMR  463 (523)
T ss_dssp             HHHHHHHCCSCEEEEEEEEEEHHHHHTTTCGGGTCSEEEE-------CTTCEEESSCHHHHHHHHTHHHHHHSSCHHHHH
T ss_pred             HHHHHhcCCCCEEEEEeCCcccHHHHHhcccCCCCCEEEE-------cCCCeEEecCHHHHHHHHhhhhhhcccCHHHHH
Confidence            888889999999999999998888643333    666544       5555666666566666665432100    1111


Q ss_pred             h-hcC----CcccHHHHHHcCccceecCCCChH
Q 016290          170 A-LTG----ARLNGKELVAAGLATHFVPSEKLP  197 (392)
Q Consensus       170 ~-ltG----~~l~a~eA~~~GLv~~vv~~~~l~  197 (392)
                      - ++.    ...++..+.+.|++|.|+++.+..
T Consensus       464 ~~~~~~y~~~~~~p~~~a~~g~iD~II~p~~tR  496 (523)
T 1on3_A          464 AEKIEEYQNAFNTPYVAAARGQVDDVIDPADTR  496 (523)
T ss_dssp             HHHHHHHHHHHSSHHHHHHTTSSSEECCGGGHH
T ss_pred             HHHHHHHHHhhCCHHHHHhcCCCCEeeCHHHHH
Confidence            0 111    125567899999999999986654

>2bzr_A Propionyl-COA carboxylase beta chain 5; fatty acid biosynthesis, accase, ligase, transferase; 2.2A {Mycobacterium tuberculosis} PDB: 2a7s_A

Probab=93.50  E-value=0.46  Score=48.58  Aligned_cols=160  Identities=14%  Similarity=0.130  Sum_probs=96.4

Q ss_pred             eCCEEEEEEcCCCC-CCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhHHHHHHHHHH
Q 016290           19 IGNVRLVTLNRPRQ-LNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYW   97 (392)
Q Consensus        19 ~~~v~~itLnrp~~-lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~~~~~~~~~   97 (392)
                      +|.-..|.=|+|.. .-+++++-.....+.++.+++ .++-+|.|.-.. .|..|-+-..           ....+..-+
T Consensus       345 ~G~~Vgvian~~~~~~G~l~~~~a~Kaar~i~~a~~-~~iPlv~lvDt~-Gf~~G~~~E~-----------~Gi~~~ga~  411 (548)
T 2bzr_A          345 DGRPVGIVANQPTHFAGCLDINASEKAARFVRTCDC-FNIPIVMLVDVP-GFLPGTDQEY-----------NGIIRRGAK  411 (548)
T ss_dssp             TTEEEEEEEECTTSGGGCBCHHHHHHHHHHHHHHHH-TTCCEEEEEEEC-CBCCCHHHHH-----------TTHHHHHHH
T ss_pred             CCEEEEEEEECCcccCCCCCHHHHHHHHHHHHHHHh-cCCCEEEEeecc-CCCCChHHHH-----------hhHHHHHHH
Confidence            34333344455542 247999999999999998875 466777764322 2333322111           122333456


Q ss_pred             HHHHHHhcCCeEEEEecCceeccccccc----ccCceEEEeCCeeeeccccccCccCCchhHHHHhhcch-H-------H
Q 016290           98 LCHHIHTYKKTQVALAHGITMGGGASLM----VPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-H-------L  165 (392)
Q Consensus        98 l~~~i~~~~kP~IA~v~G~a~GgG~~la----l~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G-~-------~  165 (392)
                      +++.+.....|+|++|=|.+.|||.-..    +.+|+++|.++       ..+++...-|+.-.+.|..- .       .
T Consensus       412 ~l~a~~~~~VP~isvI~g~~~Ggg~~am~~~~~~~d~~~awp~-------a~i~Vmgpegaa~Il~r~~~~~~~~~g~~~  484 (548)
T 2bzr_A          412 LLYAYGEATVPKITVITRKAYGGAYCVMGSKDMGCDVNLAWPT-------AQIAVMGASGAVGFVYRQQLAEAAANGEDI  484 (548)
T ss_dssp             HHHHHHHCCSCEEEEEEEEEEHHHHHHTTCGGGTCSEEEECTT-------CEEESSCHHHHHHHHTCCC----------C
T ss_pred             HHHHHhCCCCCEEEEEeCCcchHHHHHhccccCCCCEEEEcCC-------CEEEecCHHHHHHHHhhhHHhhhhcccccH
Confidence            7788899999999999999988875332    23777666555       45555555566656655321 1       0


Q ss_pred             HHHHh-hcC----CcccHHHHHHcCccceecCCCChHH
Q 016290          166 GEFLA-LTG----ARLNGKELVAAGLATHFVPSEKLPE  198 (392)
Q Consensus       166 a~~L~-ltG----~~l~a~eA~~~GLv~~vv~~~~l~~  198 (392)
                      +..+- ++.    ...++..+.+.|++|.|+++.+...
T Consensus       485 ~~~~~~~~~~y~~~~~~p~~~a~~g~iD~II~p~~tR~  522 (548)
T 2bzr_A          485 DKLRLRLQQEYEDTLVNPYVAAERGYVGAVIPPSHTRG  522 (548)
T ss_dssp             HHHHHHHHHHHHHHHSBSHHHHHTTSSSEECCGGGHHH
T ss_pred             HHHHHHHHHHHHHhhCCHHHHHhcCCCceeeCHHHHHH
Confidence            11110 111    1234567899999999999876543

>3n6r_B Propionyl-COA carboxylase, beta subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Roseobacter denitrificans}

Probab=90.74  E-value=1.7  Score=44.23  Aligned_cols=157  Identities=15%  Similarity=0.095  Sum_probs=97.5

Q ss_pred             eCCEEEEEEcCCCC-CCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhHHHHHHHHHH
Q 016290           19 IGNVRLVTLNRPRQ-LNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYW   97 (392)
Q Consensus        19 ~~~v~~itLnrp~~-lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~~~~~~~~~   97 (392)
                      +|...-|.=|+|.. --+|+++-.+...+.++..++ .++-+|.|.-.. .|-.|-+-.           .....+..-+
T Consensus       336 ~G~~Vgvian~~~~~~G~l~~~~a~Kaarfi~lcd~-~~iPlv~lvDtp-Gf~~G~~~E-----------~~Gi~~~gAk  402 (531)
T 3n6r_B          336 EGRTVGVVANQPLVLAGCLDIDSSRKAARFVRFCDA-FEIPLLTLIDVP-GFLPGTSQE-----------YGGVIKHGAK  402 (531)
T ss_dssp             TTEEEEEEEECTTTGGGCBCHHHHHHHHHHHHHHHH-TTCCEEEEEEEC-SBCCSHHHH-----------HTTHHHHHHH
T ss_pred             CCEEEEEEEecccccCCCCCHHHHHHHHHHHHHhhc-cCCCEEEEeCCC-CCCCCHHHH-----------HhhHHHHHHH
Confidence            44434444566642 247999999999999987776 457777775332 233332111           1223445567


Q ss_pred             HHHHHHhcCCeEEEEecCceecccccccc----cCceEEEeCCeeeeccccccCccCCchhHHHHhhcc-------h-HH
Q 016290           98 LCHHIHTYKKTQVALAHGITMGGGASLMV----PLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLP-------G-HL  165 (392)
Q Consensus        98 l~~~i~~~~kP~IA~v~G~a~GgG~~lal----~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~-------G-~~  165 (392)
                      +++.+..+..|+|++|=|.+.|||.--..    .+|+++|.++       ..++..+.-|++-.+.|--       - ..
T Consensus       403 ~l~a~a~a~VP~itvI~g~~~Ggg~~am~~~~~~~d~~~awp~-------A~i~Vm~pegaa~Il~r~~~~~~~~~~~~~  475 (531)
T 3n6r_B          403 LLYAYGEATVPMVTVITRKAYGGAYVVMSSKHLRADFNYAWPT-------AEVAVMGAKGATEIIHRGDLGDPEKIAQHT  475 (531)
T ss_dssp             HHHHHHHCCSCEEEEEEEEEEHHHHHHTTCGGGTCSEEEECTT-------CEEESSCHHHHHHHHCCTTTTSTTHHHHHH
T ss_pred             HHHHHHhCCCCEEEEEcCCccchhhhhccCccCCCCeEEEcCC-------ceEecCCHHHHHHHHhcccccchhHHHHHH
Confidence            88999999999999999999988853322    2777666555       4555555555555554421       1 12


Q ss_pred             HHHHhhcCCcccHHHHHHcCccceecCCCChHH
Q 016290          166 GEFLALTGARLNGKELVAAGLATHFVPSEKLPE  198 (392)
Q Consensus       166 a~~L~ltG~~l~a~eA~~~GLv~~vv~~~~l~~  198 (392)
                      ..|--..   .++..|.+.|++|.|+++.+...
T Consensus       476 ~~y~~~~---~~p~~aa~~~~vD~vIdP~~TR~  505 (531)
T 3n6r_B          476 ADYEERF---ANPFVASERGFVDEVIQPRSTRK  505 (531)
T ss_dssp             HHHHHHH---SSSHHHHHHTSSSEECCGGGHHH
T ss_pred             HHHHHHh---cCHHHHHhcCccCcccCHHHHHH
Confidence            2232222   34456778999999999887653

>3iav_A Propionyl-COA carboxylase complex B subunit; accase, pccase, ACC, PCC, CT, carboxyltransfe polyketide, fatty acid, PKS, FAS; 1.75A {Streptomyces coelicolor} PDB: 1xnw_A 3ib9_A* 3ibb_A 3mfm_C 1xny_A* 1xnv_A* 1xo6_A

Probab=90.50  E-value=1.3  Score=45.04  Aligned_cols=158  Identities=14%  Similarity=0.095  Sum_probs=97.3

Q ss_pred             eCCEEEEEEcCCCC-CCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhHHHHHHHHHH
Q 016290           19 IGNVRLVTLNRPRQ-LNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYW   97 (392)
Q Consensus        19 ~~~v~~itLnrp~~-lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~~~~~~~~~   97 (392)
                      +|...-|.=|+|.. --+|+++-.....+.++..++. ++-+|.|.-... |-.|-+-.           ....++..-+
T Consensus       330 ~G~~Vgvian~~~~~~G~l~~~~a~Kaarfi~~c~~~-~iPlv~lvDtpG-f~~G~~~E-----------~~gi~~~~Ak  396 (530)
T 3iav_A          330 EGRPVGIVANQPMQFAGCLDITASEKAARFVRTCDAF-NVPVLTFVDVPG-FLPGVDQE-----------HDGIIRRGAK  396 (530)
T ss_dssp             TTEEEEEEEECTTSGGGCBCHHHHHHHHHHHHHHHHT-TCCEEEEEEECC-BCCCHHHH-----------HTTHHHHHHH
T ss_pred             CCEEEEEEEecCcccCCCCCHHHHHHHHHHHHHHHhc-CCCEEEEeeCCC-CCccHHHH-----------HhhHHHHHHH
Confidence            44444455566642 2479999999999999877764 577777753322 44443311           1234555677


Q ss_pred             HHHHHHhcCCeEEEEecCceeccccccccc-----CceEEEeCCeeeeccccccCccCCchhHHHHhhcch--------H
Q 016290           98 LCHHIHTYKKTQVALAHGITMGGGASLMVP-----LKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG--------H  164 (392)
Q Consensus        98 l~~~i~~~~kP~IA~v~G~a~GgG~~lal~-----~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G--------~  164 (392)
                      +++.+.....|+|++|=|.+.|||. ++++     +|+++|.+++       .++..+.-|++-.+.|---        .
T Consensus       397 ~l~a~a~a~vP~itvI~g~~~GGa~-~am~~~~~~~d~~~awp~a-------~~~Vm~~egaa~il~r~~~~~~~~d~~~  468 (530)
T 3iav_A          397 LIFAYAEATVPLITVITRKAFGGAY-VVMGSKHLGADLNLAWPTA-------QIAVMGAQGAVNILHRRTIADAGDDAEA  468 (530)
T ss_dssp             HHHHHHHCCSCEEEEEEEEEEHHHH-HHTTCGGGTCSEEEECTTC-------EEESSCHHHHHHHHTSTTTSTTCTTCHH
T ss_pred             HHHHHHhCCCCEEEEEeCCcchHHH-HHhcCCCCCCCEEEEcCCc-------eEecCCHHHHHHHHhhhhhhhcccCHHH
Confidence            8999999999999999999998775 4444     5766665554       5555555555555544210        0


Q ss_pred             HHHHHh--hcCCcccHHHHHHcCccceecCCCChH
Q 016290          165 LGEFLA--LTGARLNGKELVAAGLATHFVPSEKLP  197 (392)
Q Consensus       165 ~a~~L~--ltG~~l~a~eA~~~GLv~~vv~~~~l~  197 (392)
                      .-..+.  +.-+..++..|.+.|++|.|+++.+..
T Consensus       469 ~~~~~~~~y~~~~~~p~~aa~~~~vD~VIdP~~TR  503 (530)
T 3iav_A          469 TRARLIQEYEDALLNPYTAAERGYVDAVIMPSDTR  503 (530)
T ss_dssp             HHHHHHHHHHHHHSSSHHHHHTTSSSEECCGGGHH
T ss_pred             HHHHHHHHHHHhcCCHHHHHhcCCCCcccCHHHHH
Confidence            000110  011123556677889999999887754

>3k8x_A Acetyl-COA carboxylase; transferase, carboxyltransferase, AC tepraloxydim, ATP-binding, biotin, fatty acid biosynthesis; HET: B89; 2.30A {Saccharomyces cerevisiae} PDB: 1w2x_A* 3h0s_A* 3h0j_A* 3h0q_A* 1od2_A* 1od4_A* 3pgq_A* 3tvu_A* 3tv5_A* 3tvw_A* 3tz3_A* 1uyr_A* 1uys_A* 1uyt_A 1uyv_A

Probab=86.20  E-value=0.3  Score=51.49  Aligned_cols=35  Identities=17%  Similarity=0.088  Sum_probs=31.7

Q ss_pred             cCCeEEEEecCceecccccccccCceEEEeCCeee
Q 016290          105 YKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVF  139 (392)
Q Consensus       105 ~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f  139 (392)
                      -..|+|+++.|.|.|||+-+...||++|+++++.+
T Consensus       245 ~~IPqIsvV~G~c~GGgAY~paL~D~vImv~~s~i  279 (758)
T 3k8x_A          245 HDIFTITLVTCRSVGIGAYLVRLGQRAIQVEGQPI  279 (758)
T ss_dssp             TTSCEEEEECSCEETHHHHHHHHTCEEEEETTCCE
T ss_pred             cCCCEEEEEccCCchHHHHHHhhCCEEEEECCceE
Confidence            35799999999999999999999999999998643

>2x24_A Acetyl-COA carboxylase; fatty acid biosynthesis, ligase, lipid synthesis; HET: X24; 2.40A {Bos taurus} PDB: 3ff6_A* 3tdc_A*

Probab=84.30  E-value=0.41  Score=50.81  Aligned_cols=37  Identities=14%  Similarity=0.083  Sum_probs=33.1

Q ss_pred             cCCeEEEEecCceecccccccccCceEEEeCCeeeec
Q 016290          105 YKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFST  141 (392)
Q Consensus       105 ~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~  141 (392)
                      ...|+|+++-|.|.|||+-+...||++|+++++.+.+
T Consensus       258 ~~iP~IsvV~G~~~GGgAy~~~lgD~vI~~~~a~i~l  294 (793)
T 2x24_A          258 DEIVTISMVSCRALGIGAYLVRLGQRVIQVENSHIIL  294 (793)
T ss_dssp             HHSCEEEEECSEEETHHHHHHHHTCCEEEETTCEEES
T ss_pred             CCCCEEEEEecCCchHHHHHHhhCCeEEEeccccEEe
Confidence            3699999999999999999999999999999876543

>3gf3_A Glutaconyl-COA decarboxylase subunit A; sodium ION transport, biotin, glutamate fermentation, lyase; HET: COO; 1.75A {Clostridium symbiosum} PDB: 3gf7_A 3glm_A* 3gma_A*

Probab=83.87  E-value=13  Score=38.28  Aligned_cols=147  Identities=9%  Similarity=0.044  Sum_probs=92.6

Q ss_pred             CCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhHHHHHHHHHHHHHHHHhcCCeEEEEe
Q 016290           34 NVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALA  113 (392)
Q Consensus        34 Nal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IA~v  113 (392)
                      -+|+++-.+...+.++.+++ -++-+|.|.-. ..|..|.+-.           .....+..-++++.+.++..|.|++|
T Consensus       387 G~l~~~~a~Kaarfi~lcd~-f~iPlv~lvDt-pGf~~G~~aE-----------~~Gi~~~gAk~l~a~a~a~VP~itvI  453 (588)
T 3gf3_A          387 GKLYRQGLIKMNEFVTLCAR-DRIPLIWLQDT-TGIDVGDEAE-----------KAELLGLGQSLIYSIENSKLPSLEIT  453 (588)
T ss_dssp             TEECHHHHHHHHHHHHHHHH-TTCCEEEEECC-CEECCSHHHH-----------HTTHHHHHHHHHHHHHHHCSCEEEEE
T ss_pred             CCcCHHHHHHHHHHHHHhhh-cCCCeEEEecC-CCCCCCHHHH-----------HHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence            36899999999999998877 46777777543 3344443211           12234455678899999999999999


Q ss_pred             cCceecccccccccCceEEEeCC--eeeeccccccCccCCchhHHHHhhc-------ch-----------HHHHHHhhcC
Q 016290          114 HGITMGGGASLMVPLKFSVVTEK--TVFSTPEASIGFHTDCGFSFIHSRL-------PG-----------HLGEFLALTG  173 (392)
Q Consensus       114 ~G~a~GgG~~lal~~d~riate~--a~f~~PE~~iGl~P~~G~s~~L~rl-------~G-----------~~a~~L~ltG  173 (392)
                      =|-+.|||. +++++.- + ..+  -.|+.|...++..+.-|+.-.+.|.       .|           .+...+-   
T Consensus       454 ~g~~~Ggg~-~am~~~~-~-~~~~~~~~awp~A~~sVm~pEgaa~Il~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~---  527 (588)
T 3gf3_A          454 IRKASAAAH-YVLGGPQ-G-NNTNVFSIGTGACEYYVMPGETAANAMYSRKLVKAKKAGEDLQPIIGKMNDMIQMYT---  527 (588)
T ss_dssp             SSEEETTHH-HHTTCTT-C-TTTEEEEEECTTCEEESSCHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHH---
T ss_pred             cCCccHHHH-HHhcccc-c-CCccceEEECCCceEEeCCHHHHHHHHhhhHHhhhhccccccchHHHHHHHHHHHHH---
Confidence            999987764 5554311 0 111  2344555666666555555555432       11           0111111   


Q ss_pred             CcccHHHHHHcCccceecCCCChHHH
Q 016290          174 ARLNGKELVAAGLATHFVPSEKLPEL  199 (392)
Q Consensus       174 ~~l~a~eA~~~GLv~~vv~~~~l~~~  199 (392)
                      +..++.-|-+.|++|.|+++.+....
T Consensus       528 ~~~~p~~aA~r~~vD~VIdP~~TR~~  553 (588)
T 3gf3_A          528 DKSRPKYCTEKGMVDEIVDMTEVRPY  553 (588)
T ss_dssp             HTTSHHHHHHTTSSSEECCGGGHHHH
T ss_pred             HhCCHHHHHhcCCCCeeeCHHHHHHH
Confidence            12477788899999999999876543

>3u9r_B MCC beta, methylcrotonyl-COA carboxylase, beta-subunit; carboxyltransferase, beta-BETA-alpha superhelix, ligase; HET: 1PE; 1.50A {Pseudomonas aeruginosa} PDB: 3u9s_B* 3u9t_B

Probab=83.79  E-value=5.3  Score=40.76  Aligned_cols=140  Identities=10%  Similarity=0.052  Sum_probs=86.2

Q ss_pred             CCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhHHHHHHHHHHHHHHHHhcCCeEEEEe
Q 016290           34 NVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALA  113 (392)
Q Consensus        34 Nal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IA~v  113 (392)
                      -+++++-.+...+.++.+++ .++-+|.|.-..+ |..|-+-.           .....+..-++.+.+..+..|+|++|
T Consensus       366 G~l~~~~a~Kaarfi~~c~~-~~iPlv~lvDtpG-f~~G~~~E-----------~~Gi~~~gAk~~~a~~~a~vP~itvi  432 (555)
T 3u9r_B          366 GILFAEAAQKGAHFIELACQ-RGIPLLFLQNITG-FMVGQKYE-----------AGGIAKHGAKLVTAVACARVPKFTVL  432 (555)
T ss_dssp             SSBCHHHHHHHHHHHHHHHH-HTCCEEEEEEECC-BCCSHHHH-----------HTTHHHHHHHHHHHHHHCCSCEEEEE
T ss_pred             CccCHHHHHHHHHHHHHHhc-CCCCEEEEecCcC-CCCCHHHH-----------HHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence            57999999999999998876 4577787764432 33332211           12223445678889999999999999


Q ss_pred             cCceecccccccc-----cCceEEEeCCeeeeccccccCccCCchhHHHHhhc------------ch-H-------HHHH
Q 016290          114 HGITMGGGASLMV-----PLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRL------------PG-H-------LGEF  168 (392)
Q Consensus       114 ~G~a~GgG~~lal-----~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl------------~G-~-------~a~~  168 (392)
                      -|.+.|||. +++     .+|+++|.+++       .+|+...-|++..|...            .. .       +..+
T Consensus       433 ~g~~~Ggg~-~am~~~~~~~d~~~a~p~A-------~i~Vmgpegaa~il~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  504 (555)
T 3u9r_B          433 IGGSFGAGN-YGMCGRAYDPRFLWMWPNA-------RIGVMGGEQAAGVLAQVKREQAERAGQQLGVEEEAKIKAPILEQ  504 (555)
T ss_dssp             EEEEETTHH-HHTTCGGGCCSEEEECTTC-------EEESSCHHHHHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHH
T ss_pred             eCCccchhh-HhhcCccCCCCeEEEcCCc-------EEEcCCHHHHHHHHHHHHHHHHHhccCCCCcchHHHHHHHHHHH
Confidence            998888763 333     36777665555       45555545555544321            00 0       0111


Q ss_pred             HhhcCCcccHHHHHHcCccceecCCCChH
Q 016290          169 LALTGARLNGKELVAAGLATHFVPSEKLP  197 (392)
Q Consensus       169 L~ltG~~l~a~eA~~~GLv~~vv~~~~l~  197 (392)
                      +   -+..++.-|-..|++|.|+++.+..
T Consensus       505 y---~~~~~p~~aa~r~~vD~vIdP~~TR  530 (555)
T 3u9r_B          505 Y---EHQGHPYYSSARLWDDGVIDPAQTR  530 (555)
T ss_dssp             H---HHHHSHHHHHHTTSSSCBCCGGGHH
T ss_pred             H---HHhCCHHHHhhccccCcccChHHHH
Confidence            1   1123555666778888888776643

>3k8x_A Acetyl-COA carboxylase; transferase, carboxyltransferase, AC tepraloxydim, ATP-binding, biotin, fatty acid biosynthesis; HET: B89; 2.30A {Saccharomyces cerevisiae} PDB: 1w2x_A* 3h0s_A* 3h0j_A* 3h0q_A* 1od2_A* 1od4_A* 3pgq_A* 3tvu_A* 3tv5_A* 3tvw_A* 3tz3_A* 1uyr_A* 1uys_A* 1uyt_A 1uyv_A

Probab=80.34  E-value=6  Score=41.71  Aligned_cols=113  Identities=19%  Similarity=0.243  Sum_probs=78.8

Q ss_pred             CCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhHHHHHHHHHHHHHHHHhcCCeEEEEe
Q 016290           34 NVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALA  113 (392)
Q Consensus        34 Nal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IA~v  113 (392)
                      -.++++-.....+.++.+++..++-+|.|.-. ..|..|-+-.           .....+..-++.+.+..+..|+|++|
T Consensus       447 G~l~pe~a~KaArfI~lcd~~f~iPLv~LvDt-pGf~~G~~aE-----------~~Gi~k~gAkll~A~a~a~VP~itVI  514 (758)
T 3k8x_A          447 QVWHPNSAFKTAQAINDFNNGEQLPMMILANW-RGFSGGQRDM-----------FNEVLKYGSFIVDALVDYKQPIIIYI  514 (758)
T ss_dssp             TEECHHHHHHHHHHHHHHHHTSCCCEEECCCC-CEECCSHHHH-----------HTTHHHHHHHHHHHHHTCCSCEEEEE
T ss_pred             CCCCHHHHHHHHHHHHHhhhccCCCEEEEecC-CCCCCCHHHH-----------HccHHHHHHHHHHHHHhCCCCEEEEE
Confidence            47899999999999999887456777777432 3455554311           12234445678899999999999999


Q ss_pred             c--CceecccccccccCceEEEeCCe--eeeccccccCccCCchhHHHHhhcc
Q 016290          114 H--GITMGGGASLMVPLKFSVVTEKT--VFSTPEASIGFHTDCGFSFIHSRLP  162 (392)
Q Consensus       114 ~--G~a~GgG~~lal~~d~riate~a--~f~~PE~~iGl~P~~G~s~~L~rl~  162 (392)
                      =  |-+.||++ +++.+.  + ..+.  .|+.|...+|..+.-|+.-.+-|-.
T Consensus       515 ~RkGe~~GGA~-~am~~~--~-~ad~~~v~Awp~A~isVM~pEgaa~Il~r~~  563 (758)
T 3k8x_A          515 PPTGELRGGSW-VVVDPT--I-NADQMEMYADVNARAGVLEPQGMVGIKFRRE  563 (758)
T ss_dssp             CTTCEEETHHH-HTTCGG--G-STTTEEEEEETTCEEESSCHHHHHHHHSCHH
T ss_pred             ecCCccchHHH-HHhCcc--c-CCCHHHHhcCCCCEEEccCHHHHHHHHhcch
Confidence            8  88888776 555543  2 2232  6777888888887777777666543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	392
d1mj3a_	260	c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Rat	8e-24
d1uiya_	253	c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {The	4e-22
d1dcia_	275	c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2	2e-16
d1pjha_	266	c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2	4e-15
d1nzya_	269	c.14.1.3 (A:) 4-Chlorobenzoyl-CoA dehalogenase {Ps	8e-13
d1wdka4	310	c.14.1.3 (A:1-310) Fatty oxidation complex alpha s	1e-12
d1q52a_	297	c.14.1.3 (A:) Naphthoate synthase MenB {Mycobacter	4e-12
d1hzda_	266	c.14.1.3 (A:) AUH protein {Human (Homo sapiens) [T	2e-11
d2f6qa1	245	c.14.1.3 (A:108-352) Peroxisomal 3,2-trans-enoyl-C	7e-11
d1ef8a_	261	c.14.1.3 (A:) Methylmalonyl CoA decarboxylase {Esc	9e-11
d2fw2a1	258	c.14.1.3 (A:3-260) Chromodomain protein CDY2A {Hum	1e-09
d2a7ka1	230	c.14.1.3 (A:1-230) Carbapenem biosynthes protein C	1e-09
d1szoa_	249	c.14.1.3 (A:) 6-oxo camphor hydrolase {Rhodococcus	2e-08
d1wz8a1	263	c.14.1.3 (A:2-264) Probable enoyl-CoA hydratase TT	4e-07
d1sg4a1	249	c.14.1.3 (A:2-250) Dienoyl-CoA isomerase (delta3-d	2e-06

>d1mj3a_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 260

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Enoyl-CoA hydratase (crotonase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 97.1 bits (241), Expect = 8e-24
 Identities = 54/241 (22%), Positives = 104/241 (43%), Gaps = 11/241 (4%)

Query: 20  GNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFY 79
            +V L+ LNRP+ LN + + ++  L + LE +E+D     +++ G  +AF+AG D+K   
Sbjct: 15  SSVGLIQLNRPKALNALCNGLIEELNQALETFEEDPAVGAIVLTGGEKAFAAGADIKEMQ 74

Query: 80  DGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVF 139
           +    +        +      HI   KK  +A  +G  +GGG  L +        EK  F
Sbjct: 75  N----RTFQDCYSGKFLSHWDHITRIKKPVIAAVNGYALGGGCELAMMCDIIYAGEKAQF 130

Query: 140 STPEASIGFHTDCGFSFIHSRLPGH-LGEFLALTGARLNGKELVAAG----LATHFVPSE 194
             PE  +G     G +   +R  G  L   + LTG R++ ++   AG    +       E
Sbjct: 131 GQPEILLGTIPGAGGTQRLTRAVGKSLAMEMVLTGDRISAQDAKQAGLVSKIFPVETLVE 190

Query: 195 KLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKETVAEIIKS 254
           +  +  +++   +       K ++   + ++ L   + L K+ +    F+ +   E + +
Sbjct: 191 EAIQCAEKIANNSKIIVAMAKESVNA-AFEMTLTEGNKLEKK-LFYSTFATDDRREGMSA 248

Query: 255 F 255
           F
Sbjct: 249 F 249

>d1uiya_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Thermus thermophilus [TaxId: 274]} Length = 253

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Enoyl-CoA hydratase (crotonase)
species: Thermus thermophilus [TaxId: 274]

 Score = 92.5 bits (228), Expect = 4e-22
 Identities = 49/174 (28%), Positives = 75/174 (43%), Gaps = 1/174 (0%)

Query: 18  EIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKM 77
           E G+V +V LN P + N +S ++   L + L+  E D   + V++ G G+AFSAG DL  
Sbjct: 5   EKGHVAVVFLNDPERRNPLSPEMALSLLQALDDLEADPGVRAVVLTGRGKAFSAGADLAF 64

Query: 78  FYD-GRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEK 136
                    +        +  L H ++TY K  VA  +G  + GGA L +     V+ E+
Sbjct: 65  LERVTELGAEENYRHSLSLMRLFHRVYTYPKPTVAAVNGPAVAGGAGLALACDLVVMDEE 124

Query: 137 TVFSTPEASIGFHTDCGFSFIHSRLPGHLGEFLALTGARLNGKELVAAGLATHF 190
                 E  IGF        +   +     + L LTG  +  +E  A GL    
Sbjct: 125 ARLGYTEVKIGFVAALVSVILVRAVGEKAAKDLLLTGRLVEAREAKALGLVNRI 178

>d1dcia_ c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 275

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 76.7 bits (187), Expect = 2e-16
 Identities = 38/163 (23%), Positives = 58/163 (35%), Gaps = 9/163 (5%)

Query: 11  EQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFS 70
           E + +     +V  V LNRP + N ++      L E  +K  KD   + V+V G G+ F+
Sbjct: 3   ESIQVTSAQKHVLHVQLNRPEKRNAMNRAFWRELVECFQKISKDSDCRAVVVSGAGKMFT 62

Query: 71  AGGDLKMFYDGRNSKDSCLEVVYRMYWLCHH---------IHTYKKTQVALAHGITMGGG 121
           +G DL                    Y              I    K  +A  HG  +GGG
Sbjct: 63  SGIDLMDMASDILQPPGDDVARIAWYLRDLISRYQKTFTVIEKCPKPVIAAIHGGCIGGG 122

Query: 122 ASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGH 164
             L+        T+   F   E  +G   D G      ++ G+
Sbjct: 123 VDLISACDIRYCTQDAFFQVKEVDVGLAADVGTLQRLPKVIGN 165

>d1pjha_ c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 266

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 72.4 bits (176), Expect = 4e-15
 Identities = 37/274 (13%), Positives = 79/274 (28%), Gaps = 35/274 (12%)

Query: 10  DEQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAF 69
             + +     G   ++ L  P  LN +  +    L E LE  +++      I++  GR F
Sbjct: 3   QNEKISYRIEGPFFIIHLINPDNLNALEGEDYIYLGELLELADRNRDVYFTIIQSSGRFF 62

Query: 70  SAGGDLKMFYDGRNSKDS---------CLEVVYRMYWLCHHIHTYKKTQVALAHGITMGG 120
           S+G D K     +    +             V R  ++      + K  +   +G  +G 
Sbjct: 63  SSGADFKGIAKAQGDDTNKYPSETSKWVSNFVARNVYVTDAFIKHSKVLICCLNGPAIGL 122

Query: 121 GASLMVPLKFSVVTEKTVFSTPEASIGFHTD--CGFSFIHSRLPGHLGEFLALTGARLNG 178
            A+L+            V+     +             +  +   +      +       
Sbjct: 123 SAALVALCDIVYSINDKVYLLYPFANLGLITEGGTTVSLPLKFGTNTTYECLMFNKPFKY 182

Query: 179 KELVAAGLATHFVPSEKL----------PELEKRLIGLNTGDEIAVKSAIEEFSEDVQLD 228
             +   G  +                   EL +++ GL     + +K  ++    D    
Sbjct: 183 DIMCENGFISKNFNMPSSNAEAFNAKVLEELREKVKGLYLPSCLGMKKLLKSNHID---- 238

Query: 229 GQSVLNKQSIIDECFSKETVAEIIKSFEAEAGKE 262
                      ++  S E V E +K +      +
Sbjct: 239 ---------AFNKANSVE-VNESLKYWVDGEPLK 262

>d1nzya_ c.14.1.3 (A:) 4-Chlorobenzoyl-CoA dehalogenase {Pseudomonas sp., strain CBS-3 [TaxId: 306]} Length = 269

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: 4-Chlorobenzoyl-CoA dehalogenase
species: Pseudomonas sp., strain CBS-3 [TaxId: 306]

 Score = 66.0 bits (159), Expect = 8e-13
 Identities = 33/148 (22%), Positives = 60/148 (40%), Gaps = 3/148 (2%)

Query: 20  GNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFY 79
             V  +T+  PR  N +S K +  + + L + E+DD    V++ G   AF AG  L+   
Sbjct: 11  DGVAEITIKLPRHRNALSVKAMQEVTDALNRAEEDDSVGAVMITGAEDAFCAGFYLREIP 70

Query: 80  DGRNSKDSCLE---VVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEK 136
             +                + + H I   K+  +A  +G+  GGG  + +    ++  + 
Sbjct: 71  LDKGVAGVRDHFRIAALWWHQMIHKIIRVKRPVLAAINGVAAGGGLGISLASDMAICADS 130

Query: 137 TVFSTPEASIGFHTDCGFSFIHSRLPGH 164
             F     +IG   D   S+  +R+ G 
Sbjct: 131 AKFVCAWHTIGIGNDTATSYSLARIVGM 158

>d1wdka4 c.14.1.3 (A:1-310) Fatty oxidation complex alpha subunit, N-terminal domain {Pseudomonas fragi [TaxId: 296]} Length = 310

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Fatty oxidation complex alpha subunit, N-terminal domain
species: Pseudomonas fragi [TaxId: 296]

 Score = 65.9 bits (159), Expect = 1e-12
 Identities = 45/338 (13%), Positives = 101/338 (29%), Gaps = 36/338 (10%)

Query: 11  EQVVLGEEIGNVRLVTLN-RPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAF 69
           + + +      +  +  + +   +N  +   ++ L + ++  + D   K VIV      F
Sbjct: 6   KAITVTALESGIVELKFDLKGESVNKFNRLTLNELRQAVDAIKADASVKGVIVSSGKDVF 65

Query: 70  SAGGDLKMFYDGRNSKDSCLEVVYRM-YWLCHHIHTYKKTQVALAHGITMGGGASLMVPL 128
             G D+  F +     D+ L         +           VA  +GI +GGG  + +  
Sbjct: 66  IVGADITEFVENFKLPDAELIAGNLEANKIFSDFEDLNVPTVAAINGIALGGGLEMCLAA 125

Query: 129 KFSVVTEKTVFSTPEASIGFH-TDCGFSFIHSRLPGHLGEFLALTGARLNGKELVAAGLA 187
            F V+ +      PE  +G +    G   +   +          +G     ++ +     
Sbjct: 126 DFRVMADSAKIGLPEVKLGIYPGFGGTVRLPRLIGVDNAVEWIASGKENRAEDALKVSAV 185

Query: 188 THFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKET 247
              V ++KL      LI                                  +D    ++ 
Sbjct: 186 DAVVTADKLGAAALDLI-----KRAISG----------------------ELDYKAKRQP 218

Query: 248 VAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRL 307
             E +K    E         G V      + P  ++  ++++++       + L+ E   
Sbjct: 219 KLEKLKLNAIEQMMAFETAKGFVAGQAGPNYPAPVEA-IKTIQKAANFGRDKALEVEAAG 277

Query: 308 TINILRAIISADIYEGIRALTIEKDNAPKWDPPTLDKV 345
              + +   ++     I    +      K      DK+
Sbjct: 278 FAKLAK---TSASNCLIGLF-LNDQELKKK-AKVYDKI 310

>d1q52a_ c.14.1.3 (A:) Naphthoate synthase MenB {Mycobacterium tuberculosis [TaxId: 1773]} Length = 297

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Naphthoate synthase MenB
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 64.0 bits (154), Expect = 4e-12
 Identities = 32/162 (19%), Positives = 49/162 (30%), Gaps = 17/162 (10%)

Query: 20  GNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFY 79
                V  NRP   N      V  L   L+         +V++ G G +   GG      
Sbjct: 28  DATVRVAFNRPEVRNAFRPHTVDELYRVLDHARMSPDVGVVLLTGNGPSPKDGGWAFCSG 87

Query: 80  ----------------DGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGAS 123
                           D  ++ D        +  +   I    K  + L +G   GGG S
Sbjct: 88  GDQRIRGRSGYQYASGDTADTVDVARAGRLHILEVQRLIRFMPKVVICLVNGWAAGGGHS 147

Query: 124 LMVPLKFSVVT-EKTVFSTPEASIGFHTDCGFSFIHSRLPGH 164
           L V    ++ + E   F   +A +G       S   +R  G 
Sbjct: 148 LHVVCDLTLASREYARFKQTDADVGSFDGGYGSAYLARQVGQ 189

>d1hzda_ c.14.1.3 (A:) AUH protein {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: AUH protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.7 bits (148), Expect = 2e-11
 Identities = 37/183 (20%), Positives = 71/183 (38%), Gaps = 8/183 (4%)

Query: 15  LGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGD 74
           L EE   + ++ +NR    N +S  ++ +L++ ++  + D + + +I++         G 
Sbjct: 9   LEEENRGIVVLGINRAYGKNSLSKNLIKMLSKAVDALKSDKKVRTIIIRSEVPGIFCAGA 68

Query: 75  LKMFYDGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVT 134
                   +S +     V ++  + + I       +A   G+ +GGG  L +     V  
Sbjct: 69  DLKERAKMSSSEVG-PFVSKIRAVINDIANLPVPTIAAIDGLALGGGLELALACDIRVAA 127

Query: 135 EKTVFSTPEASIGFHTDCGFSFIHSRLPGHLGEFLAL----TGARLNGKELVAAGLATHF 190
                   E  +      G      RLP  +G  LA     +   L+GKE  A GL +H 
Sbjct: 128 SSAKMGLVETKLAIIPGGGG---TQRLPRAIGMSLAKELIFSARVLDGKEAKAVGLISHV 184

Query: 191 VPS 193
           +  
Sbjct: 185 LEQ 187

>d2f6qa1 c.14.1.3 (A:108-352) Peroxisomal 3,2-trans-enoyl-CoA isomerase {Human (Homo sapiens) [TaxId: 9606]} Length = 245

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Peroxisomal 3,2-trans-enoyl-CoA isomerase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.8 bits (143), Expect = 7e-11
 Identities = 27/147 (18%), Positives = 60/147 (40%), Gaps = 3/147 (2%)

Query: 14  VLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGG 73
           ++      +  +  NRP++ N I++++   +   L+   KDD + + ++ G G  +S+G 
Sbjct: 5   LVVTSEDGITKIMFNRPKKKNAINTEMYHEIMRALKAASKDD-SIITVLTGNGDYYSSGN 63

Query: 74  DLKMFYDGRNSKDSCLEVVY--RMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFS 131
           DL  F D                +         + K  +A+ +G  +G   +L+      
Sbjct: 64  DLTNFTDIPPGGVEEKAKNNAVLLREFVGCFIDFPKPLIAVVNGPAVGISVTLLGLFDAV 123

Query: 132 VVTEKTVFSTPEASIGFHTDCGFSFIH 158
             +++  F TP + +G   +   S+  
Sbjct: 124 YASDRATFHTPFSHLGQSPEGCSSYTF 150

>d1ef8a_ c.14.1.3 (A:) Methylmalonyl CoA decarboxylase {Escherichia coli [TaxId: 562]} Length = 261

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Methylmalonyl CoA decarboxylase
species: Escherichia coli [TaxId: 562]

 Score = 59.5 bits (142), Expect = 9e-11
 Identities = 36/251 (14%), Positives = 79/251 (31%), Gaps = 7/251 (2%)

Query: 10  DEQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAF 69
             Q V    I  V ++  N  R+LN +S   +  L + L    + +     I+       
Sbjct: 2   SYQYVNVVTINKVAVIEFNYGRKLNALSKVFIDDLMQALSDLNRPE--IRCIILRAPSGS 59

Query: 70  SAGGDLKMFYDGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLK 129
                    ++  +     L     +  +   I  + K  +++  G   GG   +++   
Sbjct: 60  KVFSAGHDIHELPSGGRDPLSYDDPLRQITRMIQKFPKPIISMVEGSVWGGAFEMIMSSD 119

Query: 130 FSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHLGEFLALTGAR-LNGKELVAAGLAT 188
             +    + FS    ++G   +       +R  G       +  A  +  +  +A G+  
Sbjct: 120 LIIAASTSTFSMTPVNLGVPYNLVGIHNLTRDAGFHIVKELIFTASPITAQRALAVGILN 179

Query: 189 HFVPSEKLPELE----KRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFS 244
           H V  E+L +        +          +K  +    E   ++       Q +    + 
Sbjct: 180 HVVEVEELEDFTLQMAHHISEKAPLAIAVIKEELRVLGEAHTMNSDEFERIQGMRRAVYD 239

Query: 245 KETVAEIIKSF 255
            E   E + +F
Sbjct: 240 SEDYQEGMNAF 250

>d2fw2a1 c.14.1.3 (A:3-260) Chromodomain protein CDY2A {Human (Homo sapiens) [TaxId: 9606]} Length = 258

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Chromodomain protein CDY2A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.4 bits (134), Expect = 1e-09
 Identities = 32/155 (20%), Positives = 60/155 (38%), Gaps = 1/155 (0%)

Query: 11  EQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFS 70
             +V+ +E G  ++V   R  + N ++++V+  +   L     DD   ++          
Sbjct: 2   RDIVVKKEDGFTQIVLSTRSTEKNALNTEVIKEMVNALNSAAADDSKLVLFSAAGSVFCC 61

Query: 71  AGGDLKMFYDGRNSKDSC-LEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLK 129
                      RN +++  LE+V  +    +    +KK  V   +G  +G GAS++    
Sbjct: 62  GLDFGYFVRHLRNDRNTASLEMVDTIKNFVNTFIQFKKPIVVSVNGPAIGLGASILPLCD 121

Query: 130 FSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGH 164
                EK  F TP  + G   D   S    ++ G 
Sbjct: 122 LVWANEKAWFQTPYTTFGQSPDGCSSITFPKMMGK 156

>d2a7ka1 c.14.1.3 (A:1-230) Carbapenem biosynthes protein CarB {Pectobacterium carotovorum [TaxId: 554]} Length = 230

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Carbapenem biosynthes protein CarB
species: Pectobacterium carotovorum [TaxId: 554]

 Score = 56.0 bits (133), Expect = 1e-09
 Identities = 35/186 (18%), Positives = 64/186 (34%)

Query: 13  VVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAG 72
           +V  E    VR++TL+ P + N  S  + + + + L +   DD  + V+V G      + 
Sbjct: 1   MVFEENSDEVRVITLDHPNKHNPFSRTLETSVKDALARANADDSVRAVVVYGGAERSFSA 60

Query: 73  GDLKMFYDGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSV 132
           G         +  +   E + R+  L   +    K  +A   G  +G G    +     +
Sbjct: 61  GGDFNEVKQLSRSEDIEEWIDRVIDLYQAVLNVNKPTIAAVDGYAIGMGFQFALMFDQRL 120

Query: 133 VTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHLGEFLALTGARLNGKELVAAGLATHFVP 192
           +     F  PE   G     G + +         + +      L+    V   L    V 
Sbjct: 121 MASTANFVMPELKHGIGCSVGAAILGFTHGFSTMQEIIYQCQSLDAPRCVDYRLVNQVVE 180

Query: 193 SEKLPE 198
           S  L +
Sbjct: 181 SSALLD 186

>d1szoa_ c.14.1.3 (A:) 6-oxo camphor hydrolase {Rhodococcus erythropolis [TaxId: 1833]} Length = 249

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: 6-oxo camphor hydrolase
species: Rhodococcus erythropolis [TaxId: 1833]

 Score = 52.4 bits (124), Expect = 2e-08
 Identities = 37/206 (17%), Positives = 62/206 (30%), Gaps = 8/206 (3%)

Query: 14  VLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGG 73
           +  E  G V LVT++   +  V +S     LA        D + K+VI+ G G +F    
Sbjct: 15  IRLERDGGVLLVTVHTEGKSLVWTSTAHDELAYCFHDIACDRENKVVILTGTGPSFCNEI 74

Query: 74  DLKMFYDGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVV 133
           D   F  G       +    +                   +G         ++       
Sbjct: 75  DFTSFNLGTPHDWDEIIFEGQRLLNNLLSIEVPVIAA--VNGPVTNAPEIPVMSDIVLAA 132

Query: 134 TEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HLGEFLALTGARLNGKELVAAGLATHFVP 192
              T    P    G     G   +   + G + G +  LTG  L+ +  +  G     + 
Sbjct: 133 ESATFQDGPHFPSGIVPGDGAHVVWPHVLGSNRGRYFLLTGQELDARTALDYGAVNEVLS 192

Query: 193 SEKLPELEKRLIGLNTGDEIAVKSAI 218
            ++L      L        IA K  +
Sbjct: 193 EQELLPRAWELA-----RGIAEKPLL 213

>d1wz8a1 c.14.1.3 (A:2-264) Probable enoyl-CoA hydratase TTHA0218 {Thermus thermophilus [TaxId: 274]} Length = 263

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Probable enoyl-CoA hydratase TTHA0218
species: Thermus thermophilus [TaxId: 274]

 Score = 48.3 bits (113), Expect = 4e-07
 Identities = 24/110 (21%), Positives = 43/110 (39%), Gaps = 1/110 (0%)

Query: 11  EQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFS 70
             +        V  +T  R  +LN +   +   LA      E  +  + V+++G G  FS
Sbjct: 9   PGLAFAWPRPGVLEITF-RGEKLNAMPPALHRGLARVWRDLEAVEGVRAVLLRGEGGVFS 67

Query: 71  AGGDLKMFYDGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGG 120
           AGG   +  + R S ++ L V +    L      + +  VA    + +G 
Sbjct: 68  AGGSFGLIEEMRASHEALLRVFWEARDLVLGPLNFPRPVVAAVEKVAVGA 117

>d1sg4a1 c.14.1.3 (A:2-250) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Human (Homo sapiens), mitochondrial [TaxId: 9606]} Length = 249

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase)
species: Human (Homo sapiens), mitochondrial [TaxId: 9606]

 Score = 46.4 bits (108), Expect = 2e-06
 Identities = 33/250 (13%), Positives = 78/250 (31%), Gaps = 10/250 (4%)

Query: 11  EQVVLGEEIGN-VRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAF 69
           ++V++  + G  V ++    P  +N +S + ++ L   LEK E D   + VI+       
Sbjct: 2   QRVLVEPDAGAGVAVMKFKNP-PVNSLSLEFLTELVISLEKLENDKSFRGVILTSDRPGV 60

Query: 70  SAGGDLKMFYDGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLK 129
            + G       GR+                    +      A+      GG    +    
Sbjct: 61  FSAGLDLTEMCGRSPAHYAGYWKAVQELWLRLYQSNLVLVSAINGACPAGGCLVALTCDY 120

Query: 130 FSVVTEKTVFSTPEASIGF--HTDCGFSFIHSRLPGHLGEFLALTGARLNGKELVAAGLA 187
             +            +             + + +     E     G      E +  G+ 
Sbjct: 121 RILADNPRYCIGLNETQLGIIAPFWLKDTLENTIGHRAAERALQLGLLFPPAEALQVGIV 180

Query: 188 THFVPSEKLP----ELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECF 243
              VP E++         + + +        K+ + + +   +L  Q   + Q+ +    
Sbjct: 181 DQVVPEEQVQSTALSAIAQWMAIPDHARQLTKAMMRK-ATASRLVTQRDADVQNFV-SFI 238

Query: 244 SKETVAEIIK 253
           SK+++ + ++
Sbjct: 239 SKDSIQKSLQ 248

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	392
d1mj3a_	260	Enoyl-CoA hydratase (crotonase) {Rat (Rattus norve	100.0
d2fw2a1	258	Chromodomain protein CDY2A {Human (Homo sapiens) [	100.0
d1nzya_	269	4-Chlorobenzoyl-CoA dehalogenase {Pseudomonas sp.,	100.0
d1wz8a1	263	Probable enoyl-CoA hydratase TTHA0218 {Thermus the	100.0
d1uiya_	253	Enoyl-CoA hydratase (crotonase) {Thermus thermophi	100.0
d1dcia_	275	Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA iso	100.0
d1hzda_	266	AUH protein {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1ef8a_	261	Methylmalonyl CoA decarboxylase {Escherichia coli	100.0
d1q52a_	297	Naphthoate synthase MenB {Mycobacterium tuberculos	100.0
d2f6qa1	245	Peroxisomal 3,2-trans-enoyl-CoA isomerase {Human (	100.0
d1wdka4	310	Fatty oxidation complex alpha subunit, N-terminal	100.0
d1sg4a1	249	Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA iso	100.0
d2a7ka1	230	Carbapenem biosynthes protein CarB {Pectobacterium	100.0
d1pjha_	266	Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA iso	100.0
d1szoa_	249	6-oxo camphor hydrolase {Rhodococcus erythropolis	100.0
d1yg6a1	183	Clp protease, ClpP subunit {Escherichia coli [TaxI	98.23
d2cbya1	179	Clp protease, ClpP subunit {Mycobacterium tubercul	98.19
d2f6ia1	190	Clp protease, ClpP subunit {Plasmodium falciparum	98.09
d1y7oa1	192	Clp protease, ClpP subunit {Streptococcus pneumoni	98.07
d1tg6a1	193	Clp protease, ClpP subunit {Human (Homo sapiens),	97.87
d2f9yb1	263	Acetyl-coenzyme A carboxylase carboxyl transferase	97.13
d1xnya1	258	Propionyl-CoA carboxylase complex B subunit, PccB	97.0
d1vrga1	251	Propionyl-CoA carboxylase complex B subunit, PccB	96.96
d2a7sa1	258	Propionyl-CoA carboxylase complex B subunit, PccB	96.95
d2f9ya1	316	Acetyl-coenzyme A carboxylase carboxyl transferase	96.72
d1pixa2	287	Glutaconyl-CoA decarboxylase A subunit {Acidaminoc	96.33
d1on3a1	253	Methylmalonyl-CoA carboxyltransferase (transcarbox	96.31
d1vrga2	264	Propionyl-CoA carboxylase complex B subunit, PccB	95.21
d2a7sa2	271	Propionyl-CoA carboxylase complex B subunit, PccB	95.06
d1on3a2	264	Methylmalonyl-CoA carboxyltransferase (transcarbox	94.99
d1uyra2	404	Acetyl-coenzyme A carboxylase {Baker's yeast (Sacc	94.16
d1pixa3	299	Glutaconyl-CoA decarboxylase A subunit {Acidaminoc	93.55
d1xnya2	263	Propionyl-CoA carboxylase complex B subunit, PccB	91.46
d1uyra1	333	Acetyl-coenzyme A carboxylase {Baker's yeast (Sacc	90.56

>d1mj3a_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Enoyl-CoA hydratase (crotonase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=4.9e-58  Score=431.68  Aligned_cols=254  Identities=27%  Similarity=0.375  Sum_probs=233.3

Q ss_pred             CCCcEEEEEeC---CEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCch
Q 016290           10 DEQVVLGEEIG---NVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKD   86 (392)
Q Consensus        10 ~~~~V~~~~~~---~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~   86 (392)
                      +++.|++++.|   +|++||||||+++|+||.+|+.+|.++|+.++.|+++++|||+|.|++||+|+|++++.....   
T Consensus         2 ~~~~i~~e~~g~~~~I~~itlnrP~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~---   78 (260)
T d1mj3a_           2 NFQYIITEKKGKNSSVGLIQLNRPKALNALCNGLIEELNQALETFEEDPAVGAIVLTGGEKAFAAGADIKEMQNRTF---   78 (260)
T ss_dssp             CCSSEEEEEESGGGCEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEECCSSEEECCBCHHHHTTCCH---
T ss_pred             CCeEEEEEEEcCCCCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHHHhCCCcceEEEecccccccccchhhhhhccch---
Confidence            57889999974   899999999999999999999999999999999999999999999999999999999864221   


Q ss_pred             hHHHHHHHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcch-HH
Q 016290           87 SCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HL  165 (392)
Q Consensus        87 ~~~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G-~~  165 (392)
                       ...+......++..|.++|||+||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|+|++| ..
T Consensus        79 -~~~~~~~~~~~~~~~~~~~kPvIaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~~~~~~l~~~ig~~~  157 (260)
T d1mj3a_          79 -QDCYSGKFLSHWDHITRIKKPVIAAVNGYALGGGCELAMMCDIIYAGEKAQFGQPEILLGTIPGAGGTQRLTRAVGKSL  157 (260)
T ss_dssp             -HHHHHC--CCGGGGGGGCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCCSSTTTHHHHHHCHHH
T ss_pred             -hhhhHHHHHHHHHHhccCCCeEEEEEcCeEeHHHHHHHHHCCEEEEcCCCEEECchhccCcCCcccHHHHHHHHhCHHH
Confidence             1334445566778899999999999999999999999999999999999999999999999999999999999999 89


Q ss_pred             HHHHhhcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHhCc
Q 016290          166 GEFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSK  245 (392)
Q Consensus       166 a~~L~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~  245 (392)
                      +++|++||++++++||+++||++++++++++.+....+                                          
T Consensus       158 a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~~~~a~~~------------------------------------------  195 (260)
T d1mj3a_         158 AMEMVLTGDRISAQDAKQAGLVSKIFPVETLVEEAIQC------------------------------------------  195 (260)
T ss_dssp             HHHHHHHCCCEEHHHHHHHTSCSEEECTTTHHHHHHHH------------------------------------------
T ss_pred             HHHHHHcCcccCchhhccCCCceeeecccccccccccc------------------------------------------
Confidence            99999999999999999999999999999987644433                                          


Q ss_pred             CCHHHHHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHcCCccHHHHHHH
Q 016290          246 ETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGIR  325 (392)
Q Consensus       246 ~~~eei~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eGv~  325 (392)
                                               ++++...+|.+++.+|++++.....++++++..|...+..++.+   +|++||++
T Consensus       196 -------------------------a~~i~~~~~~a~~~~K~~l~~~~~~~l~~~l~~E~~~~~~~~~s---~d~~egi~  247 (260)
T d1mj3a_         196 -------------------------AEKIANNSKIIVAMAKESVNAAFEMTLTEGNKLEKKLFYSTFAT---DDRREGMS  247 (260)
T ss_dssp             -------------------------HHHHHHSCHHHHHHHHHHHHGGGSSCHHHHHHHHHHHHHHGGGS---HHHHHHHH
T ss_pred             -------------------------cccccchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhCC---HHHHHHHH
Confidence                                     78999999999999999999999999999999999999999999   99999999


Q ss_pred             HHHhccCCCCCCCC
Q 016290          326 ALTIEKDNAPKWDP  339 (392)
Q Consensus       326 a~l~dK~r~P~w~~  339 (392)
                      ||+ +| |+|+|+.
T Consensus       248 aFl-eK-R~P~f~~  259 (260)
T d1mj3a_         248 AFV-EK-RKANFKD  259 (260)
T ss_dssp             HHH-TT-SCCCCCC
T ss_pred             HHh-CC-CCCCCCC
Confidence            999 77 9999985

>d2fw2a1 c.14.1.3 (A:3-260) Chromodomain protein CDY2A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Chromodomain protein CDY2A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.6e-57  Score=423.33  Aligned_cols=254  Identities=20%  Similarity=0.271  Sum_probs=233.6

Q ss_pred             CCcEEEEEeCCEEEEEEc-CCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCC--chh
Q 016290           11 EQVVLGEEIGNVRLVTLN-RPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNS--KDS   87 (392)
Q Consensus        11 ~~~V~~~~~~~v~~itLn-rp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~--~~~   87 (392)
                      |+.|.+++++++++|+|| ||+++|+||.+|+.+|.++|+.++.| ++++|||+|.|++||+|+|++++......  ...
T Consensus         1 y~~i~v~~~~gi~~i~l~~rp~~~Nals~~~~~el~~al~~~~~d-~~~~vvl~g~g~~FsaG~Dl~~~~~~~~~~~~~~   79 (258)
T d2fw2a1           1 YRDIVVKKEDGFTQIVLSTRSTEKNALNTEVIKEMVNALNSAAAD-DSKLVLFSAAGSVFCCGLDFGYFVRHLRNDRNTA   79 (258)
T ss_dssp             CCSEEEEEETTEEEEEECCSSSSTTCBCHHHHHHHHHHHHHHHHS-SCSEEEEEECSSCSBCCBCHHHHHHHHHHCHHHH
T ss_pred             CceEEEEEECCEEEEEECCCCcccCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCccccccccccchhhhcccccccch
Confidence            467999999999999997 79999999999999999999999987 46999999999999999999998653221  112


Q ss_pred             HHHHHHHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcch-HHH
Q 016290           88 CLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HLG  166 (392)
Q Consensus        88 ~~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G-~~a  166 (392)
                      ...+....++++..|.++|||+||+|||+|+|||++++++||+||++++++|++||+++|++|++|++++|+|++| ..+
T Consensus        80 ~~~~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~ig~~~a  159 (258)
T d2fw2a1          80 SLEMVDTIKNFVNTFIQFKKPIVVSVNGPAIGLGASILPLCDLVWANEKAWFQTPYTTFGQSPDGCSSITFPKMMGKASA  159 (258)
T ss_dssp             HHHHHHHHHHHHHHHHHCCSCEEEEECSCEETHHHHTGGGSSEEEEETTCEEECCHHHHTCCCCTTHHHHHHHHHCHHHH
T ss_pred             hhHHHHHHHHHHHhhhccceeeeeecccccccccccccccccccceecccceeeccccccccccccccccchhhcCcccc
Confidence            2567777888999999999999999999999999999999999999999999999999999999999999999999 899


Q ss_pred             HHHhhcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHhCcC
Q 016290          167 EFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKE  246 (392)
Q Consensus       167 ~~L~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~~  246 (392)
                      .+|++||++++|+||+++||||++||++++.+.+..+                                           
T Consensus       160 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~-------------------------------------------  196 (258)
T d2fw2a1         160 NEMLIAGRKLTAREACAKGLVSQVFLTGTFTQEVMIQ-------------------------------------------  196 (258)
T ss_dssp             HHHHTTCCEEEHHHHHHTTSCSEEECSTTHHHHHHHH-------------------------------------------
T ss_pred             chhhccCcccccccccccccccccccccccccccchh-------------------------------------------
Confidence            9999999999999999999999999999987644443                                           


Q ss_pred             CHHHHHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHcCCccHHHHHHHH
Q 016290          247 TVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGIRA  326 (392)
Q Consensus       247 ~~eei~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eGv~a  326 (392)
                                              +++|++.||.+++.+|++++.....+++++++.|.+.+..++.+   +|++|||+|
T Consensus       197 ------------------------a~~i~~~~~~a~~~~K~~~~~~~~~~l~~~~~~e~~~~~~~~~s---~d~~Egi~a  249 (258)
T d2fw2a1         197 ------------------------IKELASYNAIVLEECKALVRCNIKLELEQANERECEVLRKIWSS---AQGIESMLK  249 (258)
T ss_dssp             ------------------------HHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS---HHHHHHHHH
T ss_pred             ------------------------hhhhhhhhHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCC---HHHHHHHHH
Confidence                                    78999999999999999999998889999999999999999999   999999999


Q ss_pred             HHhccCCCCCC
Q 016290          327 LTIEKDNAPKW  337 (392)
Q Consensus       327 ~l~dK~r~P~w  337 (392)
                      |+ || |+|+|
T Consensus       250 f~-EK-R~p~f  258 (258)
T d2fw2a1         250 YV-EN-KIDEF  258 (258)
T ss_dssp             HH-HS-SCCCC
T ss_pred             Hh-CC-CCCCC
Confidence            99 77 99998

>d1nzya_ c.14.1.3 (A:) 4-Chlorobenzoyl-CoA dehalogenase {Pseudomonas sp., strain CBS-3 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: 4-Chlorobenzoyl-CoA dehalogenase
species: Pseudomonas sp., strain CBS-3 [TaxId: 306]

Probab=100.00  E-value=1.6e-56  Score=423.84  Aligned_cols=262  Identities=19%  Similarity=0.260  Sum_probs=237.9

Q ss_pred             CCCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCc---h
Q 016290           10 DEQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSK---D   86 (392)
Q Consensus        10 ~~~~V~~~~~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~---~   86 (392)
                      +++.|.++++++|++||||||+++|+||.+|+.+|.++|+.++.|+++++|||+|.|+.||+|+|++++.......   .
T Consensus         1 my~~i~~~i~dgVa~Itlnrp~~~Nal~~~~~~el~~~l~~~~~d~~i~~vvltg~g~~F~aG~Dl~~~~~~~~~~~~~~   80 (269)
T d1nzya_           1 MYEAIGHRVEDGVAEITIKLPRHRNALSVKAMQEVTDALNRAEEDDSVGAVMITGAEDAFCAGFYLREIPLDKGVAGVRD   80 (269)
T ss_dssp             CCSSEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSBCCBCGGGSCSSSHHHHHHH
T ss_pred             CCCceEEEEECCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHHHhCCCceEEEEeCCcccccchhhHHHHhhcccccchhh
Confidence            3677999999999999999999999999999999999999999999999999999999999999999986532211   1


Q ss_pred             hHHHHHHHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcch-HH
Q 016290           87 SCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HL  165 (392)
Q Consensus        87 ~~~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G-~~  165 (392)
                      ....+....+.+...|.++|||+||+|||+|+|||++|+++|||||++++++|++||.++|++|++|++++++|++| .+
T Consensus        81 ~~~~~~~~~~~~~~~i~~~~kPvIaav~G~a~GgG~~lal~~D~ria~~~a~~~~~~~~~g~~~~~g~~~~l~~~ig~~~  160 (269)
T d1nzya_          81 HFRIAALWWHQMIHKIIRVKRPVLAAINGVAAGGGLGISLASDMAICADSAKFVCAWHTIGIGNDTATSYSLARIVGMRR  160 (269)
T ss_dssp             HHHHHHHHHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTCCCCTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhcchhehhhhhhcCCCceeeeecccHhhhhhhhhhcccccccccccccccccccccccChhh
Confidence            11334445667889999999999999999999999999999999999999999999999999999999999999999 99


Q ss_pred             HHHHhhcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHhCc
Q 016290          166 GEFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSK  245 (392)
Q Consensus       166 a~~L~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~  245 (392)
                      ++++++||++++|+||+++||||++||++++.+.+.++                                          
T Consensus       161 a~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~------------------------------------------  198 (269)
T d1nzya_         161 AMELMLTNRTLYPEEAKDWGLVSRVYPKDEFREVAWKV------------------------------------------  198 (269)
T ss_dssp             HHHHHHHCCCBCHHHHHHHTSCSCEECHHHHHHHHHHH------------------------------------------
T ss_pred             hhhccccccccchhHHHHcCCccccccccccccchhhh------------------------------------------
Confidence            99999999999999999999999999988776544433                                          


Q ss_pred             CCHHHHHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHcCCccHHHHHHH
Q 016290          246 ETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGIR  325 (392)
Q Consensus       246 ~~~eei~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eGv~  325 (392)
                                               +++|++.||.+++.+|++++++...+++++++.|.+.+..++.+   +|++|||+
T Consensus       199 -------------------------a~~la~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~---~~~~e~v~  250 (269)
T d1nzya_         199 -------------------------ARELAAAPTHLQVMAKERFHAGWMQPVEECTEFEIQNVIASVTH---PHFMPCLT  250 (269)
T ss_dssp             -------------------------HHHHHHSCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHS---TTHHHHHH
T ss_pred             -------------------------hhhhhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcC---HHHHHHHH
Confidence                                     78899999999999999999999999999999999999999999   99999999


Q ss_pred             HHHhccCCCCCCCCCCCC
Q 016290          326 ALTIEKDNAPKWDPPTLD  343 (392)
Q Consensus       326 a~l~dK~r~P~w~~~~l~  343 (392)
                      +|+ +| |+|+|.+..|.
T Consensus       251 afl-ek-rkp~~~~~~~~  266 (269)
T d1nzya_         251 RFL-DG-HRADRPQVELP  266 (269)
T ss_dssp             HHH-TT-CCTTCCSSCCC
T ss_pred             HHH-CC-CCCCcCCCCCC
Confidence            999 77 99999887553

>d1wz8a1 c.14.1.3 (A:2-264) Probable enoyl-CoA hydratase TTHA0218 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Probable enoyl-CoA hydratase TTHA0218
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=2.1e-56  Score=421.76  Aligned_cols=255  Identities=22%  Similarity=0.266  Sum_probs=232.2

Q ss_pred             CCCcEEEEE-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhH
Q 016290           10 DEQVVLGEE-IGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSC   88 (392)
Q Consensus        10 ~~~~V~~~~-~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~   88 (392)
                      .++.|.++. ++||++||| ||+++|+||.+|+.+|.++++.++.|++|++|||||.|++||+|+|++++.......+..
T Consensus         7 ~~~~i~~~~~~~gV~~itl-rp~~~Nal~~~m~~el~~~~~~~~~d~~vr~vvl~g~g~~FsaG~Dl~~~~~~~~~~~~~   85 (263)
T d1wz8a1           7 RYPGLAFAWPRPGVLEITF-RGEKLNAMPPALHRGLARVWRDLEAVEGVRAVLLRGEGGVFSAGGSFGLIEEMRASHEAL   85 (263)
T ss_dssp             HCTTEEEEEEETTEEEEEE-CCSGGGCBCHHHHHHHHHHHHHHTTCTTCSEEEEEEGGGCCBCCBCHHHHHHHHHCHHHH
T ss_pred             CCCeEEEEEcCCCEEEEEE-CCCCCCCCCHHHHHHHHHHHHHHhhCCCCeEEEEecccccccccchhhhhhhhccccccc
Confidence            467888887 678999999 899999999999999999999999999999999999999999999999986532223344


Q ss_pred             HHHHHHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcch-HHHH
Q 016290           89 LEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HLGE  167 (392)
Q Consensus        89 ~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G-~~a~  167 (392)
                      ..++...++++..|.++|||+||+|||.|+|||++|+++||||||+++++|++||+++|++|++|+++++++++| .++.
T Consensus        86 ~~~~~~~~~~~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~~~~~~l~~~~G~~~a~  165 (263)
T d1wz8a1          86 LRVFWEARDLVLGPLNFPRPVVAAVEKVAVGAGLALALAADIAVVGKGTRLLDGHLRLGVAAGDHAVLLWPLLVGMAKAK  165 (263)
T ss_dssp             HHHHHHHHHHHHHHHHSSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTSCCTTTHHHHTHHHHCHHHHH
T ss_pred             ccchhhhhHHHHHhhhhhcceeeeccccccccccccccccccccccccccccccccccccccccccccccccccccchhh
Confidence            677788889999999999999999999999999999999999999999999999999999999999999999999 9999


Q ss_pred             HHhhcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHhCcCC
Q 016290          168 FLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKET  247 (392)
Q Consensus       168 ~L~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~~~  247 (392)
                      +|++||++++|++|+++||+|++||++++.+.+.+                                             
T Consensus       166 ~l~l~g~~i~a~eA~~~Glv~~vv~~~~l~~~a~~---------------------------------------------  200 (263)
T d1wz8a1         166 YHLLLNEPLTGEEAERLGLVALAVEDEKVYEKALE---------------------------------------------  200 (263)
T ss_dssp             HHHHHTCCEEHHHHHHHTSSSEEECGGGHHHHHHH---------------------------------------------
T ss_pred             hhcccccccchhHHHhcCCcccccchhhhhHHHHH---------------------------------------------
Confidence            99999999999999999999999999888764443                                             


Q ss_pred             HHHHHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHcCCccHHHHHHHHH
Q 016290          248 VAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGIRAL  327 (392)
Q Consensus       248 ~eei~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eGv~a~  327 (392)
                                            ++++|++.||.+++.+|+++++.....+ +.++.|......++.+   +|++||++||
T Consensus       201 ----------------------~a~~la~~~~~al~~~K~~l~~~~~~~~-~~~~~e~~~~~~~~~s---~d~~Egi~Af  254 (263)
T d1wz8a1         201 ----------------------VAERLAQGPKEALHHTKHALNHWYRSFL-PHFELSLALEFLGFSG---KELEEGLKAL  254 (263)
T ss_dssp             ----------------------HHHHHHTSCHHHHHHHHHHHHHHHHTTH-HHHHHHHHHHHHGGGS---HHHHHHHHHH
T ss_pred             ----------------------HHHHhhccHHHHHHHHHHHHHHHHhChH-HHHHHHHHHHHHHccC---HHHHHHHHHH
Confidence                                  3789999999999999999998877555 5688999999999999   9999999999


Q ss_pred             HhccCCCCCCC
Q 016290          328 TIEKDNAPKWD  338 (392)
Q Consensus       328 l~dK~r~P~w~  338 (392)
                      + +| |+|+|.
T Consensus       255 ~-eK-R~P~f~  263 (263)
T d1wz8a1         255 K-EK-RPPEFP  263 (263)
T ss_dssp             H-TT-SCCCCC
T ss_pred             h-CC-CCCCCC
Confidence            9 77 999994

>d1uiya_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Enoyl-CoA hydratase (crotonase)
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=1.1e-55  Score=413.85  Aligned_cols=250  Identities=29%  Similarity=0.403  Sum_probs=228.6

Q ss_pred             EEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCC-CchhHHHHH
Q 016290           14 VLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRN-SKDSCLEVV   92 (392)
Q Consensus        14 V~~~~~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~-~~~~~~~~~   92 (392)
                      |.++ +|+|++||||||+++|+||.+|+.+|.++++.++.|+++++|||||.|+.||+|+|++.+..... .......++
T Consensus         2 v~ie-~G~va~Itlnrp~~~Nal~~~~~~el~~~l~~~~~d~~v~~vvl~g~g~~f~aG~dl~~~~~~~~~~~~~~~~~~   80 (253)
T d1uiya_           2 VQVE-KGHVAVVFLNDPERRNPLSPEMALSLLQALDDLEADPGVRAVVLTGRGKAFSAGADLAFLERVTELGAEENYRHS   80 (253)
T ss_dssp             EEEE-CSSEEEEEECCGGGTCCCCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSCSBCCCCHHHHHHHTTSCHHHHHHHH
T ss_pred             EEEe-eCCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHHHhCCCceEEEEecccccccccchhHHhhhccccCcccccchh
Confidence            4555 37899999999999999999999999999999999999999999999999999999998865332 223336677


Q ss_pred             HHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcch-HHHHHHhh
Q 016290           93 YRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HLGEFLAL  171 (392)
Q Consensus        93 ~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G-~~a~~L~l  171 (392)
                      ...+.+...|.++|||+||+|||+|+|||++|+++|||||++++++|++||+++|++|. |++++|+|++| ..+++|+|
T Consensus        81 ~~~~~~~~~i~~~~kpvIaav~G~a~GgG~~lal~~D~ria~~~a~~~~~e~~~g~~~~-~~~~~l~~~~g~~~a~~l~l  159 (253)
T d1uiya_          81 LSLMRLFHRVYTYPKPTVAAVNGPAVAGGAGLALACDLVVMDEEARLGYTEVKIGFVAA-LVSVILVRAVGEKAAKDLLL  159 (253)
T ss_dssp             HHHHHHHHHHHHCSSCEEEEECSCEETHHHHHHHTSSEEEEETTCEEECCHHHHTCCCH-HHHHHHHHHSCHHHHHHHHH
T ss_pred             hhhhhhhhHHhcCCCCEEEEeCeEEehhhHHHHhhhhhhhhhhhhHHhhhhcccccccc-cchhhhhcccCHHHHHHHhh
Confidence            77788999999999999999999999999999999999999999999999999998874 67889999999 99999999


Q ss_pred             cCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHhCcCCHHHH
Q 016290          172 TGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKETVAEI  251 (392)
Q Consensus       172 tG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~eei  251 (392)
                      ||++++++||+++||+++++|++++.+.+..                                                 
T Consensus       160 ~g~~~~a~eA~~~Glv~~v~~~~~~~~~a~~-------------------------------------------------  190 (253)
T d1uiya_         160 TGRLVEAREAKALGLVNRIAPPGKALEEAKA-------------------------------------------------  190 (253)
T ss_dssp             HCCEEEHHHHHHHTSCSEEECTTCHHHHHHH-------------------------------------------------
T ss_pred             cCcCCCHHHHHHhCCCcccccccccchhHHH-------------------------------------------------
Confidence            9999999999999999999999998764443                                                 


Q ss_pred             HHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHhcc
Q 016290          252 IKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGIRALTIEK  331 (392)
Q Consensus       252 ~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eGv~a~l~dK  331 (392)
                                        +++++.+.||.+++.+|+++++....++++++..|...+..++.+   +|++||++||+ +|
T Consensus       191 ------------------~a~~~~~~~~~a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s---~d~~egi~af~-eK  248 (253)
T d1uiya_         191 ------------------LAEEVAKNAPTSLRLTKELLLALPGMGLEDGFRLAALANAWVRET---GDLAEGIRAFF-EK  248 (253)
T ss_dssp             ------------------HHHHHHHSCHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHGGGC---HHHHHHHHHHH-TT
T ss_pred             ------------------HHHhhcccchHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCC---HHHHHHHHHHh-CC
Confidence                              378999999999999999999999999999999999999999999   99999999999 77


Q ss_pred             CCCCCC
Q 016290          332 DNAPKW  337 (392)
Q Consensus       332 ~r~P~w  337 (392)
                       |+|+|
T Consensus       249 -R~P~f  253 (253)
T d1uiya_         249 -RPPRF  253 (253)
T ss_dssp             -SCCCC
T ss_pred             -CCCCC
Confidence             99999

>d1dcia_ c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=1.8e-55  Score=417.62  Aligned_cols=257  Identities=22%  Similarity=0.303  Sum_probs=228.9

Q ss_pred             CCcEEEE-EeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCC----c
Q 016290           11 EQVVLGE-EIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNS----K   85 (392)
Q Consensus        11 ~~~V~~~-~~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~----~   85 (392)
                      |+.+.++ .+++|++||||||+++|+||.+|+.+|.++|+.++.|+++++|||+|.|++||+|+|+.++......    .
T Consensus         2 y~~l~~~~~~~~I~~itlnrP~~~Nals~~m~~el~~~l~~~~~d~~v~~vvltg~~~~F~aG~dl~~~~~~~~~~~~~~   81 (275)
T d1dcia_           2 YESIQVTSAQKHVLHVQLNRPEKRNAMNRAFWRELVECFQKISKDSDCRAVVVSGAGKMFTSGIDLMDMASDILQPPGDD   81 (275)
T ss_dssp             CSSEEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEEESTTCSBCCBCHHHHHHHHTSCCCSS
T ss_pred             CceEEEEEccCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEeccccccccCccHHHhhhccccccccc
Confidence            6778775 4889999999999999999999999999999999999999999999999999999999988652111    1


Q ss_pred             -h----hHHHHHHHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhh
Q 016290           86 -D----SCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSR  160 (392)
Q Consensus        86 -~----~~~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~r  160 (392)
                       .    ....+.....+++..+.++|||+||+|||+|+|||++|+++|||||++++++|++||+++|++|++|++++++|
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIaav~G~a~GgG~~lal~~D~ria~~~a~f~~pe~~~Gl~p~~~~~~~~~~  161 (275)
T d1dcia_          82 VARIAWYLRDLISRYQKTFTVIEKCPKPVIAAIHGGCIGGGVDLISACDIRYCTQDAFFQVKEVDVGLAADVGTLQRLPK  161 (275)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHSSSCEEEEECSEEETHHHHHHTTSSEEEEETTCEEECCGGGGTSCCCSSHHHHGGG
T ss_pred             ccchhhhhccchhhhHHHHHHHHhcCCCEEEEEeeEeehhhHHHHhhcCchhhccCccccchhccccccccccccccccc
Confidence             1    11344455667888999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cch-HH-HHHHhhcCCcccHHHHHHcCccceecCCCCh-HHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHH
Q 016290          161 LPG-HL-GEFLALTGARLNGKELVAAGLATHFVPSEKL-PELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQS  237 (392)
Q Consensus       161 l~G-~~-a~~L~ltG~~l~a~eA~~~GLv~~vv~~~~l-~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  237 (392)
                      ++| .. ..++++||+.++++||+++||||+++|+++. ....                                     
T Consensus       162 ~~g~~~~~~~ll~~g~~~~a~eA~~~Glv~~v~~~~~~l~~~~-------------------------------------  204 (275)
T d1dcia_         162 VIGNRSLVNELTFTARKMMADEALDSGLVSRVFPDKDVMLNAA-------------------------------------  204 (275)
T ss_dssp             TCSCHHHHHHHHHHCCEEEHHHHHHHTSSSEEESSHHHHHHHH-------------------------------------
T ss_pred             ccccccccccccccccccchhhhccCCCceeeeehhhhhhhcc-------------------------------------
Confidence            999 54 5689999999999999999999999997653 3211                                     


Q ss_pred             HHHHHhCcCCHHHHHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHcCCc
Q 016290          238 IIDECFSKETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIIS  317 (392)
Q Consensus       238 ~i~~~f~~~~~eei~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~  317 (392)
                                                    .+++++|++.||.+++.+|+.++++...+++++++.|...+..++.+   
T Consensus       205 ------------------------------~~~a~~i~~~~p~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~---  251 (275)
T d1dcia_         205 ------------------------------FALAADISSKSPVAVQGSKINLIYSRDHSVDESLDYMATWNMSMLQT---  251 (275)
T ss_dssp             ------------------------------HHHHHHHHHSCHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTSS---
T ss_pred             ------------------------------cccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCC---
Confidence                                          23478999999999999999999999999999999999999999999   


Q ss_pred             cHHHHHHHHHHhccCCCCCCCC
Q 016290          318 ADIYEGIRALTIEKDNAPKWDP  339 (392)
Q Consensus       318 ~d~~eGv~a~l~dK~r~P~w~~  339 (392)
                      +|++|||+||+ +| |+|+|..
T Consensus       252 ~d~~Egi~Afl-eK-R~pk~~~  271 (275)
T d1dcia_         252 QDIIKSVQAAM-EK-KDSKSIT  271 (275)
T ss_dssp             HHHHHHHHHHH-TT-CCGGGCC
T ss_pred             HHHHHHHHHHh-CC-CCCCCCC
Confidence            99999999999 77 9999986

>d1hzda_ c.14.1.3 (A:) AUH protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: AUH protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.7e-56  Score=421.68  Aligned_cols=252  Identities=19%  Similarity=0.288  Sum_probs=231.9

Q ss_pred             eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCC-CccccCCCchhhccCCCCchhHHHHHHHHHH
Q 016290           19 IGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVG-RAFSAGGDLKMFYDGRNSKDSCLEVVYRMYW   97 (392)
Q Consensus        19 ~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G-~~FcaG~Dl~~l~~~~~~~~~~~~~~~~~~~   97 (392)
                      ++||++||||||+++|+||.+|+.+|.++++.++.|++|++|||||.| ++||+|+|++.+.....  .....+....+.
T Consensus        13 ~~gI~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~f~~g~d~~~~~~~~~--~~~~~~~~~~~~   90 (266)
T d1hzda_          13 NRGIVVLGINRAYGKNSLSKNLIKMLSKAVDALKSDKKVRTIIIRSEVPGIFCAGADLKERAKMSS--SEVGPFVSKIRA   90 (266)
T ss_dssp             GTTEEEEEECCGGGTTCBCTTHHHHHHHHHHHHHHCSSCSEEEEEESBTEEEECCBCHHHHTTSCH--HHHHHHHHHHHH
T ss_pred             cCCEEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHhCCCcceEEEeccccccccccccccccccccc--hhhhhhhhHHHH
Confidence            467999999999999999999999999999999999999999999998 79999999998865322  223567777888


Q ss_pred             HHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcch-HHHHHHhhcCCcc
Q 016290           98 LCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HLGEFLALTGARL  176 (392)
Q Consensus        98 l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G-~~a~~L~ltG~~l  176 (392)
                      ++..|.++|||+||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|+|++| ..+++|++||+++
T Consensus        91 ~~~~i~~~~kpvIaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~ig~~~a~~l~ltg~~~  170 (266)
T d1hzda_          91 VINDIANLPVPTIAAIDGLALGGGLELALACDIRVAASSAKMGLVETKLAIIPGGGGTQRLPRAIGMSLAKELIFSARVL  170 (266)
T ss_dssp             HHHHHHTCSSCEEEEESEEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCCSSHHHHHHHHHCHHHHHHHHHHTCEE
T ss_pred             HHHHHhcCCcccccccccccccccceeccccceeeecCCcEEeecccceeecCCccceeeehhhhHHHHHHhhhccCCcc
Confidence            999999999999999999999999999999999999999999999999999999999999999999 9999999999999


Q ss_pred             cHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHhCcCCHHHHHHHHH
Q 016290          177 NGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKETVAEIIKSFE  256 (392)
Q Consensus       177 ~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~eei~~~l~  256 (392)
                      +|++|+++||||++||++++.+...                                                       
T Consensus       171 ~a~eA~~~Glv~~vv~~~~l~~~~~-------------------------------------------------------  195 (266)
T d1hzda_         171 DGKEAKAVGLISHVLEQNQEGDAAY-------------------------------------------------------  195 (266)
T ss_dssp             EHHHHHHHTSCSEEECCCTTSCHHH-------------------------------------------------------
T ss_pred             CHHHhhcccccccccChhhhhhHHH-------------------------------------------------------
Confidence            9999999999999999998754222                                                       


Q ss_pred             HhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHhccCCCCC
Q 016290          257 AEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGIRALTIEKDNAPK  336 (392)
Q Consensus       257 ~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eGv~a~l~dK~r~P~  336 (392)
                              ++|.++++++.+.||.+++.+|++++++...++.+++..|...+..++.+   +|++||++||+ +| |+|+
T Consensus       196 --------~~a~~~a~~i~~~~p~a~~~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~s---~d~~Eg~~AF~-eK-R~P~  262 (266)
T d1hzda_         196 --------RKALDLAREFLPQGPVAMRVAKLAINQGMEVDLVTGLAIEEACYAQTIPT---KDRLEGLLAFK-EK-RPPR  262 (266)
T ss_dssp             --------HHHHHHHHTTTTSCHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHTTTTC---HHHHHHHHHHT-TT-SCCC
T ss_pred             --------HHHHHHHHhcccCChHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCC---HHHHHHHHHHh-CC-CCCC
Confidence                    24456689999999999999999999999999999999999999999999   99999999999 66 9999


Q ss_pred             CCCC
Q 016290          337 WDPP  340 (392)
Q Consensus       337 w~~~  340 (392)
                      |+++
T Consensus       263 f~Gk  266 (266)
T d1hzda_         263 YKGE  266 (266)
T ss_dssp             CCCC
T ss_pred             CCCC
Confidence            9975

>d1ef8a_ c.14.1.3 (A:) Methylmalonyl CoA decarboxylase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Methylmalonyl CoA decarboxylase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=5.1e-56  Score=418.68  Aligned_cols=255  Identities=19%  Similarity=0.303  Sum_probs=223.1

Q ss_pred             CCCCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcC--CCccccCCCchhhccCCCCch
Q 016290            9 PDEQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGV--GRAFSAGGDLKMFYDGRNSKD   86 (392)
Q Consensus         9 ~~~~~V~~~~~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~--G~~FcaG~Dl~~l~~~~~~~~   86 (392)
                      |+++.|.++.+|+|++||||||+++|+||.+|+.+|.++|+++++ +++++|||+|.  |++||+|+||+++....... 
T Consensus         1 M~~~~i~~~~~~~v~~Itlnrp~~~Nal~~~~~~~l~~al~~~~~-~~~~~vVl~g~~g~~~F~aG~Dl~~~~~~~~~~-   78 (261)
T d1ef8a_           1 MSYQYVNVVTINKVAVIEFNYGRKLNALSKVFIDDLMQALSDLNR-PEIRCIILRAPSGSKVFSAGHDIHELPSGGRDP-   78 (261)
T ss_dssp             CCCSSEEEEEETTEEEEEECCGGGTTCCCHHHHHHHHHHHHHTCS-TTCCEEEEECCTTCSEEECCSCSTTC-----CT-
T ss_pred             CCCCEEEEEEECCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhC-CCCEEEEEeccccchhhcccccccccccCCccc-
Confidence            467889999999999999999999999999999999999999974 57999999986  48999999999987633211 


Q ss_pred             hHHHHHHHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcch-HH
Q 016290           87 SCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HL  165 (392)
Q Consensus        87 ~~~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G-~~  165 (392)
                        ..+....+++...|.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++++|++| ..
T Consensus        79 --~~~~~~~~~~~~~i~~~~kPvIAav~G~a~GgG~~lal~cD~ria~~~a~~~~pe~~~Gl~~~~~~~~~l~r~~g~~~  156 (261)
T d1ef8a_          79 --LSYDDPLRQITRMIQKFPKPIISMVEGSVWGGAFEMIMSSDLIIAASTSTFSMTPVNLGVPYNLVGIHNLTRDAGFHI  156 (261)
T ss_dssp             --TCTTSHHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTCCCCHHHHHTTSSSSCHHH
T ss_pred             --cccccchhhhHHHHHhCchhhhhcccccccchhhhhhhhhhhhhhhHhHHHhhhhcccccccccccccccccccCccc
Confidence              223344567889999999999999999999999999999999999999999999999999999999999999999 99


Q ss_pred             HHHHhhcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHhCc
Q 016290          166 GEFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSK  245 (392)
Q Consensus       166 a~~L~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~  245 (392)
                      ++++++||+.++|+||+++||+|++||++++.+.+.                                            
T Consensus       157 a~~~~l~g~~~~a~eA~~~Glv~~vv~~~~~~~~a~--------------------------------------------  192 (261)
T d1ef8a_         157 VKELIFTASPITAQRALAVGILNHVVEVEELEDFTL--------------------------------------------  192 (261)
T ss_dssp             HHHHHHHCCCEEHHHHHHTTSCSEEECHHHHHHHHH--------------------------------------------
T ss_pred             cccccccCceEcHHHHHHcCCcceeeechhhhhhhH--------------------------------------------
Confidence            999999999999999999999999999887765333                                            


Q ss_pred             CCHHHHHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCH--HHHHHHHHHHHHHHHHcCCccHHHHH
Q 016290          246 ETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSL--AECLKKEFRLTINILRAIISADIYEG  323 (392)
Q Consensus       246 ~~~eei~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l--~~~l~~E~~~~~~~~~~~~~~d~~eG  323 (392)
                                             +++++|++.||.+++.+|++++......+  ...++.+..+...++.+   +|++||
T Consensus       193 -----------------------~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~s---~D~~Eg  246 (261)
T d1ef8a_         193 -----------------------QMAHHISEKAPLAIAVIKEELRVLGEAHTMNSDEFERIQGMRRAVYDS---EDYQEG  246 (261)
T ss_dssp             -----------------------HHHHHHTTSCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHTS---HHHHHH
T ss_pred             -----------------------HHHHHHHhcCcHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHhCC---HHHHHH
Confidence                                   34789999999999999999998876544  45556566677788888   999999


Q ss_pred             HHHHHhccCCCCCCCC
Q 016290          324 IRALTIEKDNAPKWDP  339 (392)
Q Consensus       324 v~a~l~dK~r~P~w~~  339 (392)
                      |+||+ || |+|+|++
T Consensus       247 i~Afl-eK-R~P~f~G  260 (261)
T d1ef8a_         247 MNAFL-EK-RKPNFVG  260 (261)
T ss_dssp             HHHHH-TT-SCCCCCC
T ss_pred             HHHHh-CC-CCCcCCC
Confidence            99999 77 9999986

>d1q52a_ c.14.1.3 (A:) Naphthoate synthase MenB {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Naphthoate synthase MenB
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=3e-53  Score=406.92  Aligned_cols=259  Identities=19%  Similarity=0.217  Sum_probs=216.0

Q ss_pred             CCCCCcEEEEE--eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcC-------CCccccCCCchhh
Q 016290            8 NPDEQVVLGEE--IGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGV-------GRAFSAGGDLKMF   78 (392)
Q Consensus         8 ~~~~~~V~~~~--~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~-------G~~FcaG~Dl~~l   78 (392)
                      .+++..|++++  +++|++||||||+++|+||.+|+.+|.++|++++.|++|++|||||.       |+.||+|+|++..
T Consensus        14 ~~~~~~i~~~~~~~~gi~~ItlnRP~~~NAl~~~m~~eL~~~l~~~~~d~~vr~vVltg~~~~f~~gG~~f~ag~Dl~~~   93 (297)
T d1q52a_          14 FDDLTDITYHRHVDDATVRVAFNRPEVRNAFRPHTVDELYRVLDHARMSPDVGVVLLTGNGPSPKDGGWAFCSGGDQRIR   93 (297)
T ss_dssp             CTTCSSEEEEEESSSSEEEEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEECCCCTTTCCCEEECCC-----
T ss_pred             cCCCcceEEEEEccCCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCccEEEEecCCCcccchhhhhhhcchhhhh
Confidence            45567788876  58999999999999999999999999999999999999999999997       4677788888765


Q ss_pred             ccCCCC---------chhHHHHHHHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCC-eeeeccccccCc
Q 016290           79 YDGRNS---------KDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEK-TVFSTPEASIGF  148 (392)
Q Consensus        79 ~~~~~~---------~~~~~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~-a~f~~PE~~iGl  148 (392)
                      ......         ......+....+.+.+.|.+++|||||+|||+|+|||++|+++||+||++++ ++|++||+++|+
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIaav~G~a~GGG~~lal~~D~~ia~~~~~~f~~pe~~~Gl  173 (297)
T d1q52a_          94 GRSGYQYASGDTADTVDVARAGRLHILEVQRLIRFMPKVVICLVNGWAAGGGHSLHVVCDLTLASREYARFKQTDADVGS  173 (297)
T ss_dssp             ------------------------CHHHHHHHHHHSSSEEEEEECSEEETHHHHHHHHSSEEEEETTTCEEECCGGGGTC
T ss_pred             cccccccccccccchhhhHHHHHHHHHHHHHHHHhcCCeEEEEEcceeeeccchhhhhhhccccccccccceeeeecccc
Confidence            432110         0011233344567889999999999999999999999999999999999875 579999999999


Q ss_pred             cCCchhHHHHhhcch-HHHHHHhhcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCC
Q 016290          149 HTDCGFSFIHSRLPG-HLGEFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQL  227 (392)
Q Consensus       149 ~P~~G~s~~L~rl~G-~~a~~L~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~  227 (392)
                      +|++|++++|+|++| ..++++++||++++|+||+++||+|++||++++.+.+.++                        
T Consensus       174 ~p~~~~~~~L~r~iG~~~a~~llltg~~~~a~eA~~~Glv~~vv~~~el~~~~~~~------------------------  229 (297)
T d1q52a_         174 FDGGYGSAYLARQVGQKFAREIFFLGRTYTAEQMHQMGAVNAVAEHAELETVGLQW------------------------  229 (297)
T ss_dssp             CCCSTTTHHHHHHHCHHHHHHHHHHCCEECHHHHHHHTSCSEEECGGGHHHHHHHH------------------------
T ss_pred             ccccccccccccccCccceeeccccccccchHhhhhhccccccCchHHhhHHHHHH------------------------
Confidence            999999999999999 9999999999999999999999999999999987655444                        


Q ss_pred             ChhhHHHHHHHHHHHhCcCCHHHHHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHH
Q 016290          228 DGQSVLNKQSIIDECFSKETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRL  307 (392)
Q Consensus       228 ~~~~~~~~~~~i~~~f~~~~~eei~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~  307 (392)
                                                                 ++++++.||.+++.+|++++.... ++.+....|.+.
T Consensus       230 -------------------------------------------a~~l~~~~~~a~~~~K~~~~~~~~-~~~~~~~~~~~~  265 (297)
T d1q52a_         230 -------------------------------------------AAEINAKSPQAQRMLKFAFNLLDD-GLVGQQLFAGEA  265 (297)
T ss_dssp             -------------------------------------------HHHHHTSCHHHHHHHHHHHHHTTT-HHHHHHHHHHHH
T ss_pred             -------------------------------------------hhhhccCCHHHHHHHHHHHHHhhc-ChHHHHHHHHHH
Confidence                                                       789999999999999999987654 566666677788


Q ss_pred             HHHHHHcCCccHHHHHHHHHHhccCCCCCCCC
Q 016290          308 TINILRAIISADIYEGIRALTIEKDNAPKWDP  339 (392)
Q Consensus       308 ~~~~~~~~~~~d~~eGv~a~l~dK~r~P~w~~  339 (392)
                      +..++.+   +|++|||+||+ || |+|+|+|
T Consensus       266 ~~~~~~s---~d~~Egv~AF~-eK-R~P~f~~  292 (297)
T d1q52a_         266 TRLAYMT---DEAVEGRDAFL-QK-RPPDWSP  292 (297)
T ss_dssp             HHHHHTS---HHHHHHHHHHH-TT-SCCCCTT
T ss_pred             HHHHhcC---HHHHHHHHHHh-CC-CCCCCCC
Confidence            8888888   99999999999 77 9999985

>d2f6qa1 c.14.1.3 (A:108-352) Peroxisomal 3,2-trans-enoyl-CoA isomerase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Peroxisomal 3,2-trans-enoyl-CoA isomerase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-51  Score=384.77  Aligned_cols=240  Identities=18%  Similarity=0.271  Sum_probs=216.8

Q ss_pred             CCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCch--hH
Q 016290           11 EQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKD--SC   88 (392)
Q Consensus        11 ~~~V~~~~~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~--~~   88 (392)
                      +++|+++++++|++||||||+++|+||.+|+.+|.++++.++.|+.+ +||++|.|++||+|+|++++........  ..
T Consensus         2 ~~~i~~~~~~gi~~Itlnrp~~~Nals~~~~~~l~~~l~~~~~d~~v-~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~   80 (245)
T d2f6qa1           2 FETLVVTSEDGITKIMFNRPKKKNAINTEMYHEIMRALKAASKDDSI-ITVLTGNGDYYSSGNDLTNFTDIPPGGVEEKA   80 (245)
T ss_dssp             CSSEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHSSCS-EEEEEESTTCSBCCBCC----CCCTTHHHHHH
T ss_pred             cceEEEEEECCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHHhcCCce-EEeecCCCccccCCccchhhhccccccccccc
Confidence            57899999999999999999999999999999999999999999887 8999999999999999999876443222  12


Q ss_pred             HHHHHHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcch-HHHH
Q 016290           89 LEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HLGE  167 (392)
Q Consensus        89 ~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G-~~a~  167 (392)
                      ..+....+++...|.++|||+||+|||+|+|||++|+++|||||++++++|++||+++|++|++|++++|+|++| .+++
T Consensus        81 ~~~~~~~~~~~~~i~~~~kpvIa~v~G~a~GgG~~la~~~D~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~~g~~~a~  160 (245)
T d2f6qa1          81 KNNAVLLREFVGCFIDFPKPLIAVVNGPAVGISVTLLGLFDAVYASDRATFHTPFSHLGQSPEGCSSYTFPKIMSPAKAT  160 (245)
T ss_dssp             HHHHHHHHHHHHHHHSCCSCEEEEECSCEETHHHHGGGGCSEEEEETTCEEECCTGGGTCCCCTTHHHHHHHHHCHHHHH
T ss_pred             chhhhHHHHHHhhhhhcCCceEEEECCccccccccchhhhhhhhhhccCeEecccccCCCCccccchhhcccccccchhh
Confidence            445555678889999999999999999999999999999999999999999999999999999999999999999 9999


Q ss_pred             HHhhcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHhCcCC
Q 016290          168 FLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKET  247 (392)
Q Consensus       168 ~L~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~~~  247 (392)
                      +|++||++++|+||+++||||++||++++.+.+..+                                            
T Consensus       161 ~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~--------------------------------------------  196 (245)
T d2f6qa1         161 EMLIFGKKLTAGEACAQGLVTEVFPDSTFQKEVWTR--------------------------------------------  196 (245)
T ss_dssp             HHHTTCCCEEHHHHHHTTSCSEEECTTTHHHHHHHH--------------------------------------------
T ss_pred             hhcccccccccccccccccccccCCcchHHHHHHHH--------------------------------------------
Confidence            999999999999999999999999999988654444                                            


Q ss_pred             HHHHHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHcCCccHHH
Q 016290          248 VAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIY  321 (392)
Q Consensus       248 ~eei~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~  321 (392)
                                             +++|++.||.|++.+|+++++.....+++++..|...+..++.+   +|++
T Consensus       197 -----------------------a~~la~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s---~d~~  244 (245)
T d2f6qa1         197 -----------------------LKAFAKLPPNALRISKEVIRKREREKLHAVNAEECNVLQGRWLS---DECT  244 (245)
T ss_dssp             -----------------------HHHHTTSCHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHTS---HHHH
T ss_pred             -----------------------HHHHHcCCHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHhcC---cccC
Confidence                                   78999999999999999999998889999999999999999999   8875

>d1wdka4 c.14.1.3 (A:1-310) Fatty oxidation complex alpha subunit, N-terminal domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Fatty oxidation complex alpha subunit, N-terminal domain
species: Pseudomonas fragi [TaxId: 296]

Probab=100.00  E-value=3e-50  Score=388.00  Aligned_cols=290  Identities=14%  Similarity=0.170  Sum_probs=230.9

Q ss_pred             CCCcEEEEE-eCCEEEEEEc-CCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCC-ch
Q 016290           10 DEQVVLGEE-IGNVRLVTLN-RPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNS-KD   86 (392)
Q Consensus        10 ~~~~V~~~~-~~~v~~itLn-rp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~-~~   86 (392)
                      +.+.|.++. +++|++|+|| ||+++|+||.+|+.+|.++++.++.|+++++|||+|.|++||+|+|++++...... ..
T Consensus         4 ~~~~i~~~~~~~gva~i~ln~~p~~~Nal~~~~~~el~~al~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~   83 (310)
T d1wdka4           4 EGKAITVTALESGIVELKFDLKGESVNKFNRLTLNELRQAVDAIKADASVKGVIVSSGKDVFIVGADITEFVENFKLPDA   83 (310)
T ss_dssp             ECSSEEEEECGGGEEEEEECCTTSSSCBCCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSSSBBCCCHHHHHHHTTSCHH
T ss_pred             CCceEEEEEecCCEEEEEECCCCcccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCccchhhhhhhhhcccccch
Confidence            345787876 6789999998 89999999999999999999999999999999999999999999999998764332 22


Q ss_pred             hHHHHHHHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcch-HH
Q 016290           87 SCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HL  165 (392)
Q Consensus        87 ~~~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G-~~  165 (392)
                      ....+....++++..|.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++| ..
T Consensus        84 ~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~elal~cD~ria~~~a~f~~pe~~~Gl~P~~gg~~~L~r~iG~~~  163 (310)
T d1wdka4          84 ELIAGNLEANKIFSDFEDLNVPTVAAINGIALGGGLEMCLAADFRVMADSAKIGLPEVKLGIYPGFGGTVRLPRLIGVDN  163 (310)
T ss_dssp             HHHHHHHHHHHHHHHHHTCSSCEEEEECSCEETHHHHHHHTSSEEEEETTCEEECGGGGGTCCCCSSHHHHHHHHHCHHH
T ss_pred             hhhhhhhHHHHHHHHhhcCCccceeeccccccccccccchhhhhhhccccceecccccccCCCccccchhhhhhhhhhhh
Confidence            23444555678999999999999999999999999999999999999999999999999999999999999999999 89


Q ss_pred             HHHHhhcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHhCc
Q 016290          166 GEFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSK  245 (392)
Q Consensus       166 a~~L~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~  245 (392)
                      +++|++||++++++||+++||||++||++++.+.+.++++.          ++..    +.    ...............
T Consensus       164 a~~lll~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~----------~~~~----~~----~~~~~~~~~~~~~~~  225 (310)
T d1wdka4         164 AVEWIASGKENRAEDALKVSAVDAVVTADKLGAAALDLIKR----------AISG----EL----DYKAKRQPKLEKLKL  225 (310)
T ss_dssp             HHHHHHHCCCEEHHHHHHTTSSSEEECGGGHHHHHHHHHHH----------HHTT----SS----CHHHHHGGGGSCCSC
T ss_pred             hhhhhccccccCHHHHhhccCccEEccHHHHHHHHHHHHHH----------HHhc----cc----chhhhhhhhcccccc
Confidence            99999999999999999999999999999998776666331          1110    00    000001111111111


Q ss_pred             CCHHHHHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHcCCccHHHHHHH
Q 016290          246 ETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGIR  325 (392)
Q Consensus       246 ~~~eei~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eGv~  325 (392)
                      +.++..+.. .         .....+.........+...+.+.++.+...+++++|+.|.+.+..++.+   ++.+++++
T Consensus       226 ~~~~~~~~~-~---------~~~~~~~~~~~~~~pA~~~~l~~v~~~~~~~~~~~L~~E~~~f~~l~~t---~~a~~~i~  292 (310)
T d1wdka4         226 NAIEQMMAF-E---------TAKGFVAGQAGPNYPAPVEAIKTIQKAANFGRDKALEVEAAGFAKLAKT---SASNCLIG  292 (310)
T ss_dssp             CHHHHHHHH-H---------HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTS---HHHHHHHH
T ss_pred             cchhhhHHH-H---------HhhhhhhhhccCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhCC---HHHHHHHH
Confidence            222222211 1         1112233444455556677889999999999999999999999999999   99999999


Q ss_pred             HHHhcc
Q 016290          326 ALTIEK  331 (392)
Q Consensus       326 a~l~dK  331 (392)
                      +|+ .|
T Consensus       293 aF~-~k  297 (310)
T d1wdka4         293 LFL-ND  297 (310)
T ss_dssp             HHH-HH
T ss_pred             HHH-hh
Confidence            998 45

>d1sg4a1 c.14.1.3 (A:2-250) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Human (Homo sapiens), mitochondrial [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase)
species: Human (Homo sapiens), mitochondrial [TaxId: 9606]

Probab=100.00  E-value=5.8e-50  Score=374.63  Aligned_cols=241  Identities=17%  Similarity=0.197  Sum_probs=219.4

Q ss_pred             CcEEEEEe--CCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCC-CccccCCCchhhccCCCCchhH
Q 016290           12 QVVLGEEI--GNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVG-RAFSAGGDLKMFYDGRNSKDSC   88 (392)
Q Consensus        12 ~~V~~~~~--~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G-~~FcaG~Dl~~l~~~~~~~~~~   88 (392)
                      +.|+++.+  +||++||||||+ +|+||.+|+.+|.++++.++.|+++++|||+|.| ++||+|+|++++....  ....
T Consensus         2 ~~ilve~~~~~gIa~itln~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~~Fs~G~Dl~~~~~~~--~~~~   78 (249)
T d1sg4a1           2 QRVLVEPDAGAGVAVMKFKNPP-VNSLSLEFLTELVISLEKLENDKSFRGVILTSDRPGVFSAGLDLTEMCGRS--PAHY   78 (249)
T ss_dssp             CSEEEEEETTTTEEEEEECCTT-TTEECHHHHHHHHHHHHHHHHCTTCCEEEEEESSTEESCCEECGGGGSSCC--HHHH
T ss_pred             CcEEEEEECCCCEEEEEECCCC-cCCCCHHHHHHHHHHHHHHHhCCCccEEEEEeccceeEecccccccccccc--cccc
Confidence            45777765  679999999997 6999999999999999999999999999999999 6899999999986432  3334


Q ss_pred             HHHHHHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeee--eccccccCccCCchhHHHHhhcch-HH
Q 016290           89 LEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVF--STPEASIGFHTDCGFSFIHSRLPG-HL  165 (392)
Q Consensus        89 ~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f--~~PE~~iGl~P~~G~s~~L~rl~G-~~  165 (392)
                      ..++...++++..|.++|||+||+|||+|+|||++|+++|||||++++++|  ++||+++|++|++|++++|+|++| ..
T Consensus        79 ~~~~~~~~~~~~~l~~~~kpvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~pe~~~Gl~p~~g~~~~l~~~iG~~~  158 (249)
T d1sg4a1          79 AGYWKAVQELWLRLYQSNLVLVSAINGACPAGGCLVALTCDYRILADNPRYCIGLNETQLGIIAPFWLKDTLENTIGHRA  158 (249)
T ss_dssp             HHHHHHHHHHHHHHHTCSSEEEEEECEEBCHHHHHHHTTSSEEEEECCTTCCBSCCGGGGTCCCCHHHHHHHHHHHCHHH
T ss_pred             cccchhhHHHHHhhhcCccccchhhcccccccccccccccccceeecccccccccccccccccccccccccccccccccc
Confidence            678888889999999999999999999999999999999999999999876  789999999999999999999999 99


Q ss_pred             HHHHhhcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHhCc
Q 016290          166 GEFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSK  245 (392)
Q Consensus       166 a~~L~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~  245 (392)
                      +++|++||++++|++|+++||+|+++|++++.+.+.++                                          
T Consensus       159 a~~lll~g~~~~a~~A~~~Glv~~v~~~~~l~~~a~~~------------------------------------------  196 (249)
T d1sg4a1         159 AERALQLGLLFPPAEALQVGIVDQVVPEEQVQSTALSA------------------------------------------  196 (249)
T ss_dssp             HHHHHHHTCCBCHHHHHHHTSSSEEECGGGHHHHHHHH------------------------------------------
T ss_pred             ccccccccccccHHHHHhhccccccCChHHHHHHHHHH------------------------------------------
Confidence            99999999999999999999999999998887644443                                          


Q ss_pred             CCHHHHHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHcCCccHHHHHHH
Q 016290          246 ETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGIR  325 (392)
Q Consensus       246 ~~~eei~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eGv~  325 (392)
                                               ++++++.||.+++.+|+++++.....+.+.++.|.+.+..++.+   +++++|++
T Consensus       197 -------------------------a~~l~~~~~~a~~~~K~~~~~~~~~~l~~~~~~e~~~~~~~~~~---e~~~~~le  248 (249)
T d1sg4a1         197 -------------------------IAQWMAIPDHARQLTKAMMRKATASRLVTQRDADVQNFVSFISK---DSIQKSLQ  248 (249)
T ss_dssp             -------------------------HHHHHTSCHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHTS---HHHHHHHT
T ss_pred             -------------------------HHHHHcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhCC---HHHHHhcC
Confidence                                     78899999999999999999998889999999999999999988   89998874

>d2a7ka1 c.14.1.3 (A:1-230) Carbapenem biosynthes protein CarB {Pectobacterium carotovorum [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Carbapenem biosynthes protein CarB
species: Pectobacterium carotovorum [TaxId: 554]

Probab=100.00  E-value=1.4e-49  Score=367.88  Aligned_cols=224  Identities=21%  Similarity=0.250  Sum_probs=201.4

Q ss_pred             EEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCC-CccccCCCchhhccCCCCchhHHHHH
Q 016290           14 VLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVG-RAFSAGGDLKMFYDGRNSKDSCLEVV   92 (392)
Q Consensus        14 V~~~~~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G-~~FcaG~Dl~~l~~~~~~~~~~~~~~   92 (392)
                      |..+.+++|++||||||+++|+||.+|+.+|.+++++++.|+++++|||+|.| ++||+|+|++++..... ......++
T Consensus         2 ~~~~~~d~I~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~i~~vVl~~~g~~~F~aG~Dl~~~~~~~~-~~~~~~~~   80 (230)
T d2a7ka1           2 VFEENSDEVRVITLDHPNKHNPFSRTLETSVKDALARANADDSVRAVVVYGGAERSFSAGGDFNEVKQLSR-SEDIEEWI   80 (230)
T ss_dssp             EEEEEETTEEEEEECCSSTTCBCCHHHHHHHHHHHHHHHHCTTCCEEEEECCTTSCSBCBSCHHHHHTC-C-HHHHHHHH
T ss_pred             EEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhCCcccccceeccchhhhhhhccccccccccc-ccccccch
Confidence            44567899999999999999999999999999999999999999999999988 89999999999976433 23346777


Q ss_pred             HHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcch-HHHHHHhh
Q 016290           93 YRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HLGEFLAL  171 (392)
Q Consensus        93 ~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G-~~a~~L~l  171 (392)
                      ...++++..|.++|||+||+|||+|+|||++|+++||||||+++++|++||+++|++|++|+ .+|+|++| ..+++|++
T Consensus        81 ~~~~~~~~~i~~~~kpvIaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~G~~p~~g~-~~l~~~iG~~~a~~l~l  159 (230)
T d2a7ka1          81 DRVIDLYQAVLNVNKPTIAAVDGYAIGMGFQFALMFDQRLMASTANFVMPELKHGIGCSVGA-AILGFTHGFSTMQEIIY  159 (230)
T ss_dssp             HHHHHHHHHHHTCCSCEEEEECSEEETHHHHHHTTSSEEEEETTCEEECCGGGGTCCCHHHH-HHHHHHHCHHHHHHHHH
T ss_pred             hhhhhhhhcccchhcceeeecccccccccccchhccchhhccccchhhhccccccccccccc-ccccccccccccccccc
Confidence            78888999999999999999999999999999999999999999999999999999998876 47999999 99999999


Q ss_pred             cCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHhCcCCHHHH
Q 016290          172 TGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKETVAEI  251 (392)
Q Consensus       172 tG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~eei  251 (392)
                      ||++++|+||+++||||++||++++.+.+.+                                                 
T Consensus       160 ~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~-------------------------------------------------  190 (230)
T d2a7ka1         160 QCQSLDAPRCVDYRLVNQVVESSALLDAAIT-------------------------------------------------  190 (230)
T ss_dssp             HCCCBCHHHHHHHTCCSEEECHHHHHHHHHH-------------------------------------------------
T ss_pred             ccccchHHHHHHhhhcccCCChHHHHHHHHH-------------------------------------------------
Confidence            9999999999999999999998777654333                                                 


Q ss_pred             HHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHH
Q 016290          252 IKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFR  306 (392)
Q Consensus       252 ~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~  306 (392)
                                        ++++|++.||.+++.+|+++++.....+++.++.|..
T Consensus       191 ------------------~a~~ia~~~~~a~~~~K~~l~~~~~~~l~~~~~~~~a  227 (230)
T d2a7ka1         191 ------------------QAHVMASYPASAFINTKRAVNKPFIHLLEQTRDASKA  227 (230)
T ss_dssp             ------------------HHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ------------------HHHHHHcCCHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence                              3789999999999999999999888888888876644

>d1pjha_ c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4.4e-49  Score=371.96  Aligned_cols=240  Identities=14%  Similarity=0.145  Sum_probs=203.6

Q ss_pred             CCCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCC-----
Q 016290           10 DEQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNS-----   84 (392)
Q Consensus        10 ~~~~V~~~~~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~-----   84 (392)
                      .++.|.++.+|+|++||||||+++|+||.+|+.+|.++|+.+++|++|++|||+|.|++||+|+|++++......     
T Consensus         3 ~~e~i~~~~~~~v~~Itlnrp~~~Na~~~~~~~el~~al~~~~~d~~v~~vVl~g~g~~FsaG~Dl~~~~~~~~~~~~~~   82 (266)
T d1pjha_           3 QNEKISYRIEGPFFIIHLINPDNLNALEGEDYIYLGELLELADRNRDVYFTIIQSSGRFFSSGADFKGIAKAQGDDTNKY   82 (266)
T ss_dssp             CBTTEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEECBTTBSBCCBCHHHHHC-------CC
T ss_pred             CCCeEEEEEECCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHHHhCCCceEEEEeccccccccchhHHHHHhccccccccc
Confidence            456799999999999999999999999999999999999999999999999999999999999999998753211     


Q ss_pred             ----chhHHHHHHHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeC-CeeeeccccccCccCCchhHHHHh
Q 016290           85 ----KDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTE-KTVFSTPEASIGFHTDCGFSFIHS  159 (392)
Q Consensus        85 ----~~~~~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate-~a~f~~PE~~iGl~P~~G~s~~L~  159 (392)
                          ......++...+.+...|.++|||+||+|||+|+|||++|+++||||||++ +++|++||+++|++|++|++++|+
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~l~~~~kP~IAav~G~a~GgG~~lal~~D~~ia~~~~~~~~~pe~~lGl~p~~g~~~~l~  162 (266)
T d1pjha_          83 PSETSKWVSNFVARNVYVTDAFIKHSKVLICCLNGPAIGLSAALVALCDIVYSINDKVYLLYPFANLGLITEGGTTVSLP  162 (266)
T ss_dssp             SSHHHHHHHHTHHHHHHHHHHHHHCCSEEEEEECSCEEHHHHHHHHHSSEEEESSTTCEEECCHHHHTCCCCTTHHHHHH
T ss_pred             cchhhHHHHHHHHHHHHHHHHHHhcchhhhhhhhcccccccccchhccchhhhhhccccccccccccccccccccccccc
Confidence                111255677778899999999999999999999999999999999999975 678999999999999999999999


Q ss_pred             hcch-HHHHHHhhcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHH
Q 016290          160 RLPG-HLGEFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSI  238 (392)
Q Consensus       160 rl~G-~~a~~L~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  238 (392)
                      |++| .++++|++||++++++||+++||||++++..++..  +.+.                                  
T Consensus       163 r~~g~~~a~~llltg~~~~a~eA~~~Glv~~v~~~~~~~~--~~~~----------------------------------  206 (266)
T d1pjha_         163 LKFGTNTTYECLMFNKPFKYDIMCENGFISKNFNMPSSNA--EAFN----------------------------------  206 (266)
T ss_dssp             HHHCHHHHHHHHHTTCCEEHHHHHHTTCCSEECCCCTTCH--HHHH----------------------------------
T ss_pred             cccccchhhhhhccCCcCCHHHHHHCCCEeEeeCchhhhH--HHHH----------------------------------
Confidence            9999 99999999999999999999999999998776543  1110                                  


Q ss_pred             HHHHhCcCCHHHHHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHHHH
Q 016290          239 IDECFSKETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTIN  310 (392)
Q Consensus       239 i~~~f~~~~~eei~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~  310 (392)
                                               .+.+.++++.+...++.|+..+|++++......+..++..|......
T Consensus       207 -------------------------~~~~~~l~~~~~~~~~~s~~~~K~~l~~~~~~~~~~~~~~e~~~~~~  253 (266)
T d1pjha_         207 -------------------------AKVLEELREKVKGLYLPSCLGMKKLLKSNHIDAFNKANSVEVNESLK  253 (266)
T ss_dssp             -------------------------HHHHHHHHHHHTTCCHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHH
T ss_pred             -------------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence                                     01233456788899999999999999987666666655544443333

>d1szoa_ c.14.1.3 (A:) 6-oxo camphor hydrolase {Rhodococcus erythropolis [TaxId: 1833]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: 6-oxo camphor hydrolase
species: Rhodococcus erythropolis [TaxId: 1833]

Probab=100.00  E-value=1.3e-47  Score=358.67  Aligned_cols=227  Identities=18%  Similarity=0.242  Sum_probs=203.1

Q ss_pred             CCCCCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchh
Q 016290            8 NPDEQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDS   87 (392)
Q Consensus         8 ~~~~~~V~~~~~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~   87 (392)
                      ...++.|+++++|+|++||||||+++|+||.+|+.+|.+++++++.|+++++|||+|.|++||+|+|++++....  ...
T Consensus         9 ~~~y~~i~~~~~~~v~~itln~p~~~Nal~~~~~~el~~al~~~~~d~~v~~vvl~g~g~~FsaG~Dl~~~~~~~--~~~   86 (249)
T d1szoa_           9 SQKYENIRLERDGGVLLVTVHTEGKSLVWTSTAHDELAYCFHDIACDRENKVVILTGTGPSFCNEIDFTSFNLGT--PHD   86 (249)
T ss_dssp             TTSCTTEEEEEETTEEEEEECBTTBSCEECHHHHHHHHHHHHHHHHCTTCCEEEEECBTTBSBCEECGGGSCCSS--HHH
T ss_pred             hCCCCeEEEEEECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCcceEeeecccccccccchhhhhhccc--ccc
Confidence            457889999999999999999999999999999999999999999999999999999999999999999985422  333


Q ss_pred             HHHHHHHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeee-ccccccCccCCchhHHHHhhcch-HH
Q 016290           88 CLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFS-TPEASIGFHTDCGFSFIHSRLPG-HL  165 (392)
Q Consensus        88 ~~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~-~PE~~iGl~P~~G~s~~L~rl~G-~~  165 (392)
                      ...++...++++..|.++|||+||++||.| |||++|+++||+||++++++|. +||+++|++|++|++++|+|++| .+
T Consensus        87 ~~~~~~~~~~l~~~i~~~~~pvIa~v~g~~-~GG~~l~l~~D~ria~~~a~f~~~pe~~~g~~p~~g~~~~l~r~ig~~~  165 (249)
T d1szoa_          87 WDEIIFEGQRLLNNLLSIEVPVIAAVNGPV-TNAPEIPVMSDIVLAAESATFQDGPHFPSGIVPGDGAHVVWPHVLGSNR  165 (249)
T ss_dssp             HHHHHHHHHHHHHHHHHCCSCEEEEECSCB-CSSTHHHHTSSEEEEETTCEEECTTSGGGTCCCTTTHHHHHHHHHCHHH
T ss_pred             hhhhhhhhhhhhhhcccCcccceeeecccc-ccccccccccccccccCCcEEEEeeccccccccccccccccccccCccc
Confidence            467777788999999999999999999988 5577999999999999999995 79999999999999999999999 99


Q ss_pred             HHHHhhcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHhCc
Q 016290          166 GEFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSK  245 (392)
Q Consensus       166 a~~L~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~  245 (392)
                      +++|+|||++++++||+++||||++||++++.+.+.                                            
T Consensus       166 a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~--------------------------------------------  201 (249)
T d1szoa_         166 GRYFLLTGQELDARTALDYGAVNEVLSEQELLPRAW--------------------------------------------  201 (249)
T ss_dssp             HHHHHHTTCEEEHHHHHHHTSCSEEECHHHHHHHHH--------------------------------------------
T ss_pred             eeeecccCCCCCHHHHHHhCCcCcccCHHHHHHHHH--------------------------------------------
Confidence            999999999999999999999999999887765333                                            


Q ss_pred             CCHHHHHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHH
Q 016290          246 ETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKE  304 (392)
Q Consensus       246 ~~~eei~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E  304 (392)
                                             +.+++|++.||.+++.+|+++++.....+++.+..+
T Consensus       202 -----------------------~~a~~la~~~~~a~~~~K~~l~~~~~~~~e~~l~~~  237 (249)
T d1szoa_         202 -----------------------ELARGIAEKPLLARRYARKVLTRQLRRVMEADLSLG  237 (249)
T ss_dssp             -----------------------HHHHHHHTSCHHHHHHHHHHHSHHHHHHHHHHHHHH
T ss_pred             -----------------------HHHHHHHcCCHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence                                   337899999999999999999987766666555443

>d1yg6a1 c.14.1.1 (A:11-193) Clp protease, ClpP subunit {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Escherichia coli [TaxId: 562]

Probab=98.23  E-value=2.9e-06  Score=73.02  Aligned_cols=143  Identities=13%  Similarity=0.119  Sum_probs=95.0

Q ss_pred             EEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCce--EEEEEcCCCccccCCCchhhccCCCCchhHHHHHHHHHHHHHH
Q 016290           24 LVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAK--LVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYWLCHH  101 (392)
Q Consensus        24 ~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~--~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~~~~~~~~~l~~~  101 (392)
                      +|.|+.|     ++.++...+...|..++.++..+  .|.|.+      .|||+..-                 ..+...
T Consensus        18 iI~l~g~-----I~~~~~~~~i~~l~~l~~~~~~~~I~l~InS------~GG~v~~g-----------------~~i~d~   69 (183)
T d1yg6a1          18 VIFLTGQ-----VEDHMANLIVAQMLFLEAENPEKDIYLYINS------PGGVITAG-----------------MSIYDT   69 (183)
T ss_dssp             EEEEESS-----BCHHHHHHHHHHHHHHHHHCSSSCEEEEEEE------CCBCHHHH-----------------HHHHHH
T ss_pred             EEEECCE-----ECHHHHHHHHHHHHHhhhhccCCceEEEEeC------CCccHHHH-----------------HHHHHH
Confidence            4556655     78999999999888876543222  233344      35554321                 346677


Q ss_pred             HHhcCCeEEEEecCceecccccccccCc--eEEEeCCeeeeccccccCccCCchhHH----HHhhcc-----------h-
Q 016290          102 IHTYKKTQVALAHGITMGGGASLMVPLK--FSVVTEKTVFSTPEASIGFHTDCGFSF----IHSRLP-----------G-  163 (392)
Q Consensus       102 i~~~~kP~IA~v~G~a~GgG~~lal~~d--~riate~a~f~~PE~~iGl~P~~G~s~----~L~rl~-----------G-  163 (392)
                      |..++.|++..+.|.|++.|.-+.++|+  .|+++++++|.+-+...|..-...-..    .+-++.           | 
T Consensus        70 i~~~~~~v~tv~~G~aaS~a~~I~~ag~~~~R~~~~ns~~miH~~~~~~~G~~~~i~~~~~~~~~~~~~~~~~~~~~tg~  149 (183)
T d1yg6a1          70 MQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMALHTGQ  149 (183)
T ss_dssp             HHHSSSCEEEEEEEEEETHHHHHHHTSCTTCEEECTTCEEEECCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             HHhCCCCEEEEEEEEeHHHHHHHHHcCCCCceeeCCCceEEecccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHCc
Confidence            8889999999999999999999988888  799999999998887766531111000    011111           1 


Q ss_pred             --HHHHHHhhcCCcccHHHHHHcCccceecCCC
Q 016290          164 --HLGEFLALTGARLNGKELVAAGLATHFVPSE  194 (392)
Q Consensus       164 --~~a~~L~ltG~~l~a~eA~~~GLv~~vv~~~  194 (392)
                        ..-..++-.-..++|+||++.||||+++.+.
T Consensus       150 ~~e~i~~~~~~d~~lta~EAl~~GliD~Ii~~~  182 (183)
T d1yg6a1         150 SLEQIERDTERDRFLSAPEAVEYGLVDSILTHR  182 (183)
T ss_dssp             CHHHHHHHTSSCEEEEHHHHHHHTSSSEECCCC
T ss_pred             CHHHHHHHhccCccccHHHHHHcCCCcEEeccC
Confidence              1111221222348999999999999999753

>d2cbya1 c.14.1.1 (A:15-193) Clp protease, ClpP subunit {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.19  E-value=6.5e-06  Score=70.55  Aligned_cols=141  Identities=10%  Similarity=0.088  Sum_probs=91.0

Q ss_pred             EEEEcCCCCCCCCCHHHHHHHHHHHHHHhhC---CCceEEEEEcCCCccccCCCchhhccCCCCchhHHHHHHHHHHHHH
Q 016290           24 LVTLNRPRQLNVISSKVVSLLAEYLEKWEKD---DQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYWLCH  100 (392)
Q Consensus        24 ~itLnrp~~lNal~~~m~~~L~~~l~~~~~d---~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~~~~~~~~~l~~  100 (392)
                      +|.|+.|     +|.++..++...|..++.+   +.+. |.|.+      -|||+...                 ..+..
T Consensus        15 ii~l~g~-----I~~~~~~~~i~~l~~l~~~~~~~~I~-l~InS------~GG~v~~g-----------------l~i~d   65 (179)
T d2cbya1          15 IIFLGSE-----VNDEIANRLCAQILLLAAEDASKDIS-LYINS------PGGSISAG-----------------MAIYD   65 (179)
T ss_dssp             EEEECSC-----BCHHHHHHHHHHHHHHHHHCSSSCEE-EEEEE------CCBCHHHH-----------------HHHHH
T ss_pred             EEEECCE-----ECHHHHHHHHHHHHHHhccCCCCeEE-EEeeC------CCCCHHHH-----------------HHHHH
Confidence            4555554     7899999999887666533   2333 33443      45555432                 24556


Q ss_pred             HHHhcCCeEEEEecCceecccccccccCc--eEEEeCCeeeeccccccCccCCchhH----HHHhhcc-----------h
Q 016290          101 HIHTYKKTQVALAHGITMGGGASLMVPLK--FSVVTEKTVFSTPEASIGFHTDCGFS----FIHSRLP-----------G  163 (392)
Q Consensus       101 ~i~~~~kP~IA~v~G~a~GgG~~lal~~d--~riate~a~f~~PE~~iGl~P~~G~s----~~L~rl~-----------G  163 (392)
                      .|..++.|+...+.|.|++.|.-+.++||  .|+++++++|.+.+...|+.-...-.    ..+-++.           |
T Consensus        66 ~i~~~~~~v~t~~~G~aaS~a~~il~ag~k~~R~~~~~s~~miH~~~~~~~G~~~~i~~~~~~l~~~~~~i~~i~a~~tg  145 (179)
T d2cbya1          66 TMVLAPCDIATYAMGMAASMGEFLLAAGTKGKRYALPHARILMHQPLGGVTGSAADIAIQAEQFAVIKKEMFRLNAEFTG  145 (179)
T ss_dssp             HHHHCSSCEEEEEEEEEETHHHHHHHTSCTTCEEECTTCEEECCCC----------CHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHhhccceeeehhhhhhhHHHHHHHcCCCCceEECCchHhhcCCCchhcCCccHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            67888999999999999999999999998  89999999999988766653211100    0111111           1


Q ss_pred             ---HHHHHHhhcCCcccHHHHHHcCccceecCC
Q 016290          164 ---HLGEFLALTGARLNGKELVAAGLATHFVPS  193 (392)
Q Consensus       164 ---~~a~~L~ltG~~l~a~eA~~~GLv~~vv~~  193 (392)
                         ..-..++-.-..++|+||++.||||+++.+
T Consensus       146 ~~~~~i~~~~~~d~~l~a~EA~~~GliDeIi~~  178 (179)
T d2cbya1         146 QPIERIEADSDRDRWFTAAEALEYGFVDHIITR  178 (179)
T ss_dssp             CCHHHHHHHHHTTCEEEHHHHHHHTSCSEECSC
T ss_pred             CCHHHHHHhhcCCceecHHHHHHcCCCcEEecC
Confidence               111222234556999999999999999965

>d2f6ia1 c.14.1.1 (A:177-366) Clp protease, ClpP subunit {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.09  E-value=1.8e-05  Score=68.31  Aligned_cols=141  Identities=12%  Similarity=0.042  Sum_probs=95.0

Q ss_pred             EEEEcCCCCCCCCCHHHHHHHHHHHHHHhhC--CCceEEEEEcCCCccccCCCchhhccCCCCchhHHHHHHHHHHHHHH
Q 016290           24 LVTLNRPRQLNVISSKVVSLLAEYLEKWEKD--DQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYWLCHH  101 (392)
Q Consensus        24 ~itLnrp~~lNal~~~m~~~L~~~l~~~~~d--~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~~~~~~~~~l~~~  101 (392)
                      +|.|+.|     +|.++..++...|..++..  +.+. |.|.      |-|||+...                 ..+...
T Consensus        20 ii~l~g~-----Id~~~~~~~i~~l~~l~~~~~~~I~-l~IN------S~GG~v~~g-----------------~ai~d~   70 (190)
T d2f6ia1          20 IIYLTDE-----INKKTADELISQLLYLDNINHNDIK-IYIN------SPGGSINEG-----------------LAILDI   70 (190)
T ss_dssp             EEEECSC-----BCHHHHHHHHHHHHHHHHHCCSCEE-EEEE------ECCBCHHHH-----------------HHHHHH
T ss_pred             EEEECCe-----eCHHHHHHHHHHHHHHhccCCCCeE-EEEe------CchhhhhHH-----------------HHHHHH
Confidence            4556654     7899999999988887653  2343 3333      455665431                 345666


Q ss_pred             HHhcCCeEEEEecCceecccccccccCc--eEEEeCCeeeeccccccCccCCch----hHHHHhhcc-----------h-
Q 016290          102 IHTYKKTQVALAHGITMGGGASLMVPLK--FSVVTEKTVFSTPEASIGFHTDCG----FSFIHSRLP-----------G-  163 (392)
Q Consensus       102 i~~~~kP~IA~v~G~a~GgG~~lal~~d--~riate~a~f~~PE~~iGl~P~~G----~s~~L~rl~-----------G-  163 (392)
                      |..++.|+...+.|.|++.|.-+.++++  .|++.++++|.+.....|+.-...    ....+-++-           | 
T Consensus        71 i~~~~~~v~tv~~G~aaS~a~~i~~aG~kg~R~~~pns~imiH~~s~~~~G~~~di~~~~~~l~~~~~~~~~i~a~~tg~  150 (190)
T d2f6ia1          71 FNYIKSDIQTISFGLVASMASVILASGKKGKRKSLPNCRIMIHQPLGNAFGHPQDIEIQTKEILYLKKLLYHYLSSFTNQ  150 (190)
T ss_dssp             HHHSSSCEEEEEEEEECHHHHHHHHTSCTTCEEECTTCEEESSCTTCSCC--------CHHHHHHHHHHHHHHHHHHHCC
T ss_pred             HHhhCCceEEEEeccccchhHHHHHhCCCCccccCCCcEEEEcccccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            7888999999999999999999999988  699999999999998877632111    011111111           1 


Q ss_pred             --HHHHHHhhcCCcccHHHHHHcCccceecCC
Q 016290          164 --HLGEFLALTGARLNGKELVAAGLATHFVPS  193 (392)
Q Consensus       164 --~~a~~L~ltG~~l~a~eA~~~GLv~~vv~~  193 (392)
                        ..-..+.-.-..++|+||++.||||+++.+
T Consensus       151 ~~~~i~~~~~~d~~l~a~EAl~~GliD~Ii~~  182 (190)
T d2f6ia1         151 TVETIEKDSDRDYYMNALEAKQYGIIDEVIET  182 (190)
T ss_dssp             CHHHHHHHHHTTCEECHHHHHHHTSCSEECCC
T ss_pred             CHHHHHHhccCCeeecHHHHHHcCCCcEEccc
Confidence              111112222345999999999999999975

>d1y7oa1 c.14.1.1 (A:2-193) Clp protease, ClpP subunit {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=98.07  E-value=1.9e-05  Score=68.32  Aligned_cols=141  Identities=11%  Similarity=0.111  Sum_probs=90.8

Q ss_pred             EEEEcCCCCCCCCCHHHHHHHHHHHHHHhh-CC--CceEEEEEcCCCccccCCCchhhccCCCCchhHHHHHHHHHHHHH
Q 016290           24 LVTLNRPRQLNVISSKVVSLLAEYLEKWEK-DD--QAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYWLCH  100 (392)
Q Consensus        24 ~itLnrp~~lNal~~~m~~~L~~~l~~~~~-d~--~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~~~~~~~~~l~~  100 (392)
                      +|.|.-|     ++.++...+...|..++. |+  .+. |.|.+.      |||+.+.                 ..+..
T Consensus        26 ii~l~g~-----I~~~~~~~~~~~l~~l~~~~~~~~I~-l~InS~------GG~v~~g-----------------lai~d   76 (192)
T d1y7oa1          26 IIMLTGP-----VEDNMANSVIAQLLFLDAQDSTKDIY-LYVNTP------GGSVSAG-----------------LAIVD   76 (192)
T ss_dssp             EEEEESC-----BCHHHHHHHHHHHHHHHHHCTTSCEE-EEEEEC------CBCHHHH-----------------HHHHH
T ss_pred             EEEECCE-----EchHHHHHHHHHHHHhhhhcccCcee-eeecCC------CCCHHHH-----------------HHHHH
Confidence            4445544     789999999998877753 22  333 344544      4444321                 34667


Q ss_pred             HHHhcCCeEEEEecCceeccccccccc--CceEEEeCCeeeeccccccCccCCchhH------HHHhhc-----------
Q 016290          101 HIHTYKKTQVALAHGITMGGGASLMVP--LKFSVVTEKTVFSTPEASIGFHTDCGFS------FIHSRL-----------  161 (392)
Q Consensus       101 ~i~~~~kP~IA~v~G~a~GgG~~lal~--~d~riate~a~f~~PE~~iGl~P~~G~s------~~L~rl-----------  161 (392)
                      .|..++.||...+.|.|.+.|.-|.++  ++.|++.++++|.+-....|..-.....      ..+-++           
T Consensus        77 ~i~~~~~~v~t~~~G~aaS~as~il~aG~~g~R~~~pns~~miHq~~~~~~G~~~~~~~~~~~~el~~~~~~i~~i~~~~  156 (192)
T d1y7oa1          77 TMNFIKADVQTIVMGMAASMGTVIASSGAKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAPEHLLKTRNTLEKILAEN  156 (192)
T ss_dssp             HHHHSSSCEEEEEEEEEETHHHHHHTTSCTTCEEECTTCEEECCCCC--------------CHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhcCcceEEEeccccCCccceeeeecCCCccccchHHHHHhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            788899999999999999988887665  4699999999999998887764321111      011111           


Q ss_pred             ch---HHHHHHhhcCCcccHHHHHHcCccceecCC
Q 016290          162 PG---HLGEFLALTGARLNGKELVAAGLATHFVPS  193 (392)
Q Consensus       162 ~G---~~a~~L~ltG~~l~a~eA~~~GLv~~vv~~  193 (392)
                      .|   ..-...+-....++|+||++.||||+|+.+
T Consensus       157 tg~~~~~i~~~~~rd~~lsa~EAleyGliD~Ii~~  191 (192)
T d1y7oa1         157 SGQSMEKVHADAERDNWMSAQETLEYGFIDEIMAN  191 (192)
T ss_dssp             HTCCHHHHHHHHHSCCCBCHHHHHHHTSCSEECCC
T ss_pred             hCCCHHHHHHhhcCCceecHHHHHHcCCCcEEecC
Confidence            11   112222234556999999999999999975

>d1tg6a1 c.14.1.1 (A:1-193) Clp protease, ClpP subunit {Human (Homo sapiens), mitochondrial [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Human (Homo sapiens), mitochondrial [TaxId: 9606]

Probab=97.87  E-value=7.9e-05  Score=64.32  Aligned_cols=132  Identities=14%  Similarity=0.109  Sum_probs=89.8

Q ss_pred             CCHHHHHHHHHHHHHHhhC---CCceEEEEEcCCCccccCCCchhhccCCCCchhHHHHHHHHHHHHHHHHhcCCeEEEE
Q 016290           36 ISSKVVSLLAEYLEKWEKD---DQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVAL  112 (392)
Q Consensus        36 l~~~m~~~L~~~l~~~~~d---~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IA~  112 (392)
                      +|.++...+...|..++..   ..+.+. |.+.      |||+..-                 ..+...|..++.||...
T Consensus        35 I~~~~~~~~i~~l~~l~~~~~~~~I~l~-InS~------GG~v~~g-----------------~~i~d~i~~~~~~V~tv   90 (193)
T d1tg6a1          35 IDDSVASLVIAQLLFLQSESNKKPIHMY-INSP------GGVVTAG-----------------LAIYDTMQYILNPICTW   90 (193)
T ss_dssp             BCHHHHHHHHHHHHHHHHHCSSSCEEEE-EEEC------CBCHHHH-----------------HHHHHHHHHSCSCEEEE
T ss_pred             EchHHHHHHHHHHHHhcccCCCcEEEEE-eecC------cccHHHH-----------------HHHHHHHHhhcCceEEE
Confidence            7889999998888777643   234433 3444      4443321                 34566788899999999


Q ss_pred             ecCceecccccccccCc--eEEEeCCeeeeccccccCccCCchhHHH------HhhcchHH-HHHHhhcC----------
Q 016290          113 AHGITMGGGASLMVPLK--FSVVTEKTVFSTPEASIGFHTDCGFSFI------HSRLPGHL-GEFLALTG----------  173 (392)
Q Consensus       113 v~G~a~GgG~~lal~~d--~riate~a~f~~PE~~iGl~P~~G~s~~------L~rl~G~~-a~~L~ltG----------  173 (392)
                      +.|.|.+.|.-+.++|+  .|++.++++|.+.....|+.-.  .+-+      +-++.-.. ..|.--||          
T Consensus        91 ~~G~aaS~a~~il~aG~~g~R~~~pns~~miHq~~~~~~G~--~~di~~~~~el~~~~~~i~~i~a~~Tg~~~~~i~~~~  168 (193)
T d1tg6a1          91 CVGQAASMGSLLLAAGTPGMRHSLPNSRIMIHQPSGGARGQ--ATDIAIQAEEIMKLKKQLYNIYAKHTKQSLQVIESAM  168 (193)
T ss_dssp             EEEEEETHHHHHHHTSCTTCEEECTTCEEEECCCCCCCCSS--HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred             EccchHHHHHHHhhcCccCccccCcccHHHhcCCccCCCcC--HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHh
Confidence            99999999999999998  6999999999998888776321  1111      11111111 11111233          


Q ss_pred             ---CcccHHHHHHcCccceecCC
Q 016290          174 ---ARLNGKELVAAGLATHFVPS  193 (392)
Q Consensus       174 ---~~l~a~eA~~~GLv~~vv~~  193 (392)
                         ..++|+||++.||||+++..
T Consensus       169 ~rD~~lta~EAl~yGliD~Ii~~  191 (193)
T d1tg6a1         169 ERDRYMSPMEAQEFGILDKVLVH  191 (193)
T ss_dssp             SSCEEECHHHHHHHTSCSEECSS
T ss_pred             ccCccCCHHHHHHcCCCCEEccC
Confidence               34999999999999999853

>d2f9yb1 c.14.1.4 (B:23-285) Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, AccD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, AccD
species: Escherichia coli [TaxId: 562]

Probab=97.13  E-value=0.0023  Score=57.40  Aligned_cols=141  Identities=14%  Similarity=0.132  Sum_probs=85.8

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhHHHHHHHHHHHHHH
Q 016290           22 VRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYWLCHH  101 (392)
Q Consensus        22 v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~~~~~~~~~l~~~  101 (392)
                      |.++..|-.=..-+++..-.+.+..+++.+.+. .+-+|.+.-     |+|+.+.+-.      .. .............
T Consensus        98 v~v~a~Dftv~gGS~g~~~~~Ki~~a~e~A~~~-~lPlI~~~~-----sgG~r~~e~~------~s-l~~~~~~~~~~~~  164 (263)
T d2f9yb1          98 VVAAAFEFAFMGGSMGSVVGARFVRAVEQALED-NCPLICFSA-----SGGARMQEAL------MS-LMQMAKTSAALAK  164 (263)
T ss_dssp             CBEEEECTTSTTTCBCTHHHHHHHHHHHHHHHH-TCCEEEEEE-----ESSBCGGGTH------HH-HHHHHHHHHHHHH
T ss_pred             EEEEeeeehhhccccccchhhHHhHHHHHHHHc-CCCeEEEec-----CCCccccccc------ch-hhcchhHHHHHHH
Confidence            333444443355688888899999999888765 456777754     3344433211      11 1122223334444


Q ss_pred             HHhcCCeEEEEecCceecccc-cccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcchHHHHHHhhcCCcc----
Q 016290          102 IHTYKKTQVALAHGITMGGGA-SLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHLGEFLALTGARL----  176 (392)
Q Consensus       102 i~~~~kP~IA~v~G~a~GgG~-~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G~~a~~L~ltG~~l----  176 (392)
                      +.....|+|+++.|.|.|||. .+++++|++++++.+.+++.--           .....          .||+.+    
T Consensus       165 ~~~~~vP~I~v~~g~~~GG~aa~~~~~~d~i~~~~~s~i~~aGP-----------~vve~----------~~ge~~~e~~  223 (263)
T d2f9yb1         165 MQERGLPYISVLTDPTMGGVSASFAMLGDLNIAEPKALIGFAGP-----------RVIEQ----------TVREKLPPGF  223 (263)
T ss_dssp             HHHTTCCEEEEEEEEEEHHHHTTGGGCCSEEEECTTCBEESSCH-----------HHHHH----------HHTSCCCTTT
T ss_pred             HHhCCCceEEEecCCcchHHHhhhhhcCceEeeecceeeeccCH-----------HHHhh----------hcCCcCChhh
Confidence            566788999999999999986 4777888888888776554211           01111          223332    


Q ss_pred             -cHHHHHHcCccceecCCCCh
Q 016290          177 -NGKELVAAGLATHFVPSEKL  196 (392)
Q Consensus       177 -~a~eA~~~GLv~~vv~~~~l  196 (392)
                       +++-..+.|+||.++++++.
T Consensus       224 g~a~~~~~~G~iD~vv~~ee~  244 (263)
T d2f9yb1         224 QRSEFLIEKGAIDMIVRRPEM  244 (263)
T ss_dssp             TBHHHHGGGTCCSEECCHHHH
T ss_pred             ccHHHHHhCCCCCEEECCHHH
Confidence             34445578999999976554

>d1xnya1 c.14.1.4 (A:10-267) Propionyl-CoA carboxylase complex B subunit, PccB {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Propionyl-CoA carboxylase complex B subunit, PccB
species: Streptomyces coelicolor [TaxId: 1902]

Probab=97.00  E-value=0.0055  Score=54.72  Aligned_cols=142  Identities=17%  Similarity=0.160  Sum_probs=88.4

Q ss_pred             EeCC-EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhHHHHHHHHH
Q 016290           18 EIGN-VRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMY   96 (392)
Q Consensus        18 ~~~~-v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~~~~~~~~   96 (392)
                      .+|. |.++..|..=+.-+++....+.+..+++.+.+. .+-+|.|.-+|     |+.+.+-..      . ........
T Consensus        85 I~G~~v~v~a~Dftv~gGS~g~~~~~K~~r~~e~A~~~-~lPlI~l~dsg-----Garm~e~~~------~-~~~~~~~~  151 (258)
T d1xnya1          85 VDGRPVAVFSQDFTVFGGALGEVYGQKIVKVMDFALKT-GCPVVGINDSG-----GARIQEGVA------S-LGAYGEIF  151 (258)
T ss_dssp             ETTEEEEEEEECTTSGGGCBCHHHHHHHHHHHHHHHHH-TCCEEEEECCC-----SBCGGGTHH------H-HHHHHHHH
T ss_pred             ECCEEEEEEechhhhhcCccchhhHHHHHHHHHHHHHc-CCceEEEecCC-----CcccCcccc------c-ccchhHHH
Confidence            4443 344444444466788999999999999888775 46778886643     343332111      1 11111122


Q ss_pred             HHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCC-eeeeccccccCccCCchhHHHHhhcchHHHHHHhhcCCc
Q 016290           97 WLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEK-TVFSTPEASIGFHTDCGFSFIHSRLPGHLGEFLALTGAR  175 (392)
Q Consensus        97 ~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~-a~f~~PE~~iGl~P~~G~s~~L~rl~G~~a~~L~ltG~~  175 (392)
                      ..... ..-..|+|+++.|+|.||+......||++|+.+. +.+       |+-    |.-...          ..+|+.
T Consensus       152 ~~~~~-~s~~vP~I~vv~G~~~gG~a~~~~~~~~vim~~~~a~i-------~~a----GP~vv~----------~~~ge~  209 (258)
T d1xnya1         152 RRNTH-ASGVIPQISLVVGPCAGGAVYSPAITDFTVMVDQTSHM-------FIT----GPDVIK----------TVTGED  209 (258)
T ss_dssp             HHHHH-TTTTSCEEEEECSEEEGGGGHHHHHSSEEEEETTTCEE-------ESS----CHHHHH----------HHHCCC
T ss_pred             HHHHH-HcCCCCEEEEEcCCcChhHHHHHHhccchhhcccceEE-------Eec----CHHHHH----------HHhcCc
Confidence            22222 2345899999999999999998889999988764 433       331    111111          357777


Q ss_pred             ccHHHH-------HHcCccceecCCC
Q 016290          176 LNGKEL-------VAAGLATHFVPSE  194 (392)
Q Consensus       176 l~a~eA-------~~~GLv~~vv~~~  194 (392)
                      ++.+|+       ...|++|.+++++
T Consensus       210 i~~eelgga~~h~~~sG~~d~v~~de  235 (258)
T d1xnya1         210 VGFEELGGARTHNSTSGVAHHMAGDE  235 (258)
T ss_dssp             CCHHHHHBHHHHHHTSSCCSEEESSH
T ss_pred             cChHHhccHHHHHhcCCeeEEEeCCH
Confidence            877764       4569999999754

>d1vrga1 c.14.1.4 (A:1-251) Propionyl-CoA carboxylase complex B subunit, PccB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Propionyl-CoA carboxylase complex B subunit, PccB
species: Thermotoga maritima [TaxId: 2336]

Probab=96.96  E-value=0.0045  Score=55.04  Aligned_cols=143  Identities=15%  Similarity=0.121  Sum_probs=87.6

Q ss_pred             EeCCEEEEEEcCCC-CCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhHHHHHHHHH
Q 016290           18 EIGNVRLVTLNRPR-QLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMY   96 (392)
Q Consensus        18 ~~~~v~~itLnrp~-~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~~~~~~~~   96 (392)
                      .+|.-..|.-+.+. ..-+++....+.+..+++.+.+. .+-+|.+..     |+|+.+.+-.      ..... ....+
T Consensus        83 I~G~~v~v~a~D~t~~gGs~g~~~~~K~~r~~e~A~~~-~~P~I~~~d-----sgG~r~~e~~------~~l~~-~~~~~  149 (251)
T d1vrga1          83 INGRKVAVFSQDFTVMGGSLGEMHAKKIVKLLDLALKM-GIPVIGIND-----SGGARIQEGV------DALAG-YGEIF  149 (251)
T ss_dssp             ETTEEEEEEEECTTTGGGCBCHHHHHHHHHHHHHHHHH-TCCEEEEEE-----ECSBCGGGTH------HHHHH-HHHHH
T ss_pred             EccEEEEEeeehhhhhhcccchHHHHHHHHHHHHHHHc-CCCEEEEEc-----CCCccccccc------ccccc-chHHH
Confidence            34443344444443 55678888888888888877765 456676655     3444443211      11111 11122


Q ss_pred             HHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcchHHHHHHhhcCCcc
Q 016290           97 WLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHLGEFLALTGARL  176 (392)
Q Consensus        97 ~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G~~a~~L~ltG~~l  176 (392)
                      .... ...-..|+|+++.|+|.||+......||++|++++.      ..+++-+        |+++     . ..||+.+
T Consensus       150 ~~~~-~~s~~iP~I~vv~G~~~gG~a~~~~~~d~~im~~~~------a~i~~aG--------p~vv-----~-~~~ge~~  208 (251)
T d1vrga1         150 LRNT-LASGVVPQITVIAGPCAGGAVYSPALTDFIVMVDQT------ARMFITG--------PNVI-----K-AVTGEEI  208 (251)
T ss_dssp             HHHH-HHTTTSCEEEEEEEEEBGGGGHHHHHSSEEEEETTT------CBCBSSC--------HHHH-----H-HHHCCCC
T ss_pred             HHHH-HHCCCCCEEEEEccCccccceehhhhCceEEEEccc------eeEEecC--------chhh-----h-hhcCCcC
Confidence            2222 234468999999999999999999999999987653      1233321        1111     1 2577778


Q ss_pred             cHHHH-------HHcCccceecCCC
Q 016290          177 NGKEL-------VAAGLATHFVPSE  194 (392)
Q Consensus       177 ~a~eA-------~~~GLv~~vv~~~  194 (392)
                      +.+|.       ...|++|.+++++
T Consensus       209 ~~eelGga~~h~~~sG~~D~v~~de  233 (251)
T d1vrga1         209 SQEDLGGAMVHNQKSGNAHFLADND  233 (251)
T ss_dssp             CHHHHHBHHHHHHTSCCCSEEESSH
T ss_pred             ChHHccchhhhhhccccceEEECCH
Confidence            87664       4579999999865

>d2a7sa1 c.14.1.4 (A:20-277) Propionyl-CoA carboxylase complex B subunit, PccB {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Propionyl-CoA carboxylase complex B subunit, PccB
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.95  E-value=0.0049  Score=55.03  Aligned_cols=143  Identities=16%  Similarity=0.108  Sum_probs=88.6

Q ss_pred             EeCCEEE-EEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhHHHHHHHHH
Q 016290           18 EIGNVRL-VTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMY   96 (392)
Q Consensus        18 ~~~~v~~-itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~~~~~~~~   96 (392)
                      .+|.-.. +..+-.-+.-+++..-.+.+..+.+.+.++ .+.+|.+.-     |+|+.+.+-.      .. .......+
T Consensus        86 I~G~~v~v~a~Dft~~gGS~g~~~g~K~~ra~e~A~~~-~lP~I~l~d-----sgGar~~eg~------~~-~~~~~~~~  152 (258)
T d2a7sa1          86 IDGRDVCIFSQDATVFGGSLGEVYGEKIVKVQELAIKT-GRPLIGIND-----GAGARIQEGV------VS-LGLYSRIF  152 (258)
T ss_dssp             SSSSEEEEEEECTTSGGGCBCHHHHHHHHHHHHHHHHH-TCCEEEEEC-----CCSBCGGGCT------HH-HHHHHHHH
T ss_pred             eccceEEEecccceEeCCccchhhhhHHHHHHHHHHhc-CCceEEEec-----cCCccccccc------cc-ccchhhHH
Confidence            3454444 444444466788999999999999888775 466777754     3444443211      01 11112222


Q ss_pred             HHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcchHHHHHHhhcCCcc
Q 016290           97 WLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHLGEFLALTGARL  176 (392)
Q Consensus        97 ~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G~~a~~L~ltG~~l  176 (392)
                      .... ...-..|+|+++.|+|.|||......||++|++++.      ..+++-    |.....          ..||+.+
T Consensus       153 ~~~~-~~~~~vP~I~~v~G~~~gG~a~~~~~~d~~vm~~~~------a~i~~a----GP~vV~----------~~~ge~~  211 (258)
T d2a7sa1         153 RNNI-LASGVIPQISLIMGAAAGGHVYSPALTDFVIMVDQT------SQMFIT----GPDVIK----------TVTGEEV  211 (258)
T ss_dssp             HHHH-HHTTTSCEEEEECSCCBSGGGHHHHHSSEEEEEBTT------BBCBSS----CHHHHH----------HHHCCCC
T ss_pred             HHHH-HHcCCCCEEEEEecCcccHHHHHHHhccceEeecCc------eEEEcc----ChhHHH----------HhcCCcc
Confidence            2222 234568999999999999999999999999986642      233331    111111          2577778


Q ss_pred             cHHHH-------HHcCccceecCCC
Q 016290          177 NGKEL-------VAAGLATHFVPSE  194 (392)
Q Consensus       177 ~a~eA-------~~~GLv~~vv~~~  194 (392)
                      +.+|.       ...|++|.+++++
T Consensus       212 ~~eeLGga~~h~~~sG~~D~v~~de  236 (258)
T d2a7sa1         212 TMEELGGAHTHMAKSGTAHYAASGE  236 (258)
T ss_dssp             CHHHHHBHHHHHHTSCCCSEEESSH
T ss_pred             ChhhccCHhHhhhhccccceEeCCH
Confidence            76653       4579999999854

>d2f9ya1 c.14.1.4 (A:4-319) Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, AccA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, AccA
species: Escherichia coli [TaxId: 562]

Probab=96.72  E-value=0.0063  Score=55.79  Aligned_cols=135  Identities=10%  Similarity=0.029  Sum_probs=94.0

Q ss_pred             CCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhHHHHHHHHHHHHHHHHhcCCeEEEEe
Q 016290           34 NVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALA  113 (392)
Q Consensus        34 Nal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IA~v  113 (392)
                      -+++++-.+.-...++.+++- ++-+|-+-=+.++++ |.+-.+           .......-++++.+..++.|+|++|
T Consensus       130 G~~~p~~~rKa~r~~~~a~~~-~~Pii~~vDtpG~~~-g~~~E~-----------~g~~~~~a~~~~~~~~~~vP~i~vv  196 (316)
T d2f9ya1         130 GMPAPEGYRKALRLMQMAERF-KMPIITFIDTPGAYP-GVGAEE-----------RGQSEAIARNLREMSRLGVPVVCTV  196 (316)
T ss_dssp             GCCCHHHHHHHHHHHHHHHHT-TCCEEEEEEESCSCC-SHHHHH-----------TTHHHHHHHHHHHHHTCSSCEEEEE
T ss_pred             ccccHHHHHHHHHHHHHHHHc-CcceEEEEecCcccC-Cccccc-----------ccHHHHHHHHHHHHHhCCCceEEEE
Confidence            357899999988888888874 566666643322222 211111           1122334567888999999999999


Q ss_pred             cCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcch---HHHHHHhhcCCcccHHHHHHcCcccee
Q 016290          114 HGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG---HLGEFLALTGARLNGKELVAAGLATHF  190 (392)
Q Consensus       114 ~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G---~~a~~L~ltG~~l~a~eA~~~GLv~~v  190 (392)
                      =|-+.|||.-....+|.+.+.+++.++.      +.|.+ .+..|.|-..   ..+..+     .+++.|+++.|++|++
T Consensus       197 ~g~g~~gga~a~~~~d~v~m~~~a~~sv------ispEg-~AsILwkd~~~a~eaAeal-----klta~dL~~lgiIDeI  264 (316)
T d2f9ya1         197 IGEGGSGGALAIGVGDKVNMLQYSTYSV------ISPEG-CASILWKSADKAPLAAEAM-----GIIRPRLKELKLIDSI  264 (316)
T ss_dssp             EEEEEHHHHHTTCCCSEEEECTTCEEES------SCHHH-HHHHHSSCSTTHHHHHHHH-----TCSHHHHHTTTSCSCC
T ss_pred             EhhhhchhhhhhhhhhHHHHHhhhHHhh------ccchh-hhhHhhccchhhcchHHHH-----hhhhHHHHHcCchhhc
Confidence            9999999987777899999999999983      24544 4445554332   233333     4779999999999999


Q ss_pred             cCC
Q 016290          191 VPS  193 (392)
Q Consensus       191 v~~  193 (392)
                      +|.
T Consensus       265 I~E  267 (316)
T d2f9ya1         265 IPE  267 (316)
T ss_dssp             CCC
T ss_pred             ccC
Confidence            974

>d1pixa2 c.14.1.4 (A:1-287) Glutaconyl-CoA decarboxylase A subunit {Acidaminococcus fermentans [TaxId: 905]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Glutaconyl-CoA decarboxylase A subunit
species: Acidaminococcus fermentans [TaxId: 905]

Probab=96.33  E-value=0.0085  Score=54.25  Aligned_cols=165  Identities=10%  Similarity=0.020  Sum_probs=94.2

Q ss_pred             EeCCEEEEEEcCCC-CCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhHHHHHHHHH
Q 016290           18 EIGNVRLVTLNRPR-QLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMY   96 (392)
Q Consensus        18 ~~~~v~~itLnrp~-~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~~~~~~~~   96 (392)
                      .+|.-..|.-|.+. +.-++++.-.+.+..+++.+.+. .+-+|.|.-+     +|+.+..-.............|    
T Consensus       101 i~G~~v~v~a~D~t~~gGs~~~~~~~K~~r~~~lA~~~-~lP~I~l~ds-----~Ga~~~~~~e~~~~~~~~g~~~----  170 (287)
T d1pixa2         101 VNGKWCVVVASDNKKLAGAWVPGQAECLLRASDTAKTL-HVPLVYVLNC-----SGVKFDEQEKVYPNRRGGGTPF----  170 (287)
T ss_dssp             ETTEEEEEEEECTTTTTTEECTTHHHHHHHHHHHHHHH-TCCEEEEECC-----CEECGGGHHHHSSSTTSTTHHH----
T ss_pred             cccceEEEEEeccccccccchhhHHHHHHHHHHhhhhc-CCCEEEEecC-----CcccCCcchhhccchhhHHHHH----
Confidence            34433334445554 44688888999999988888765 4667777543     3333322111000000001122    


Q ss_pred             HHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeec--cccccCccCCchhHHHHhhcch-HHHHHHhhcC
Q 016290           97 WLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFST--PEASIGFHTDCGFSFIHSRLPG-HLGEFLALTG  173 (392)
Q Consensus        97 ~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~--PE~~iGl~P~~G~s~~L~rl~G-~~a~~L~ltG  173 (392)
                      .-...+.....|+|++|-|.|.|||.-.+++||++++.+++.+.+  |.+--+..+..+........+. ..+..  .+-
T Consensus       171 ~~~a~ls~~~VP~Isvv~G~~~gGgAy~~~~~~~i~~~~~a~i~~~Gp~vv~~~~~~~~~~~~~~~ei~~~~ge~--~~~  248 (287)
T d1pixa2         171 FRNAELNQLGIPVIVGIYGTNPAGGGYHSISPTVIIAHEKANMAVGGAGIMGGMNPKGHVDLEYANEIADMVDRT--GKT  248 (287)
T ss_dssp             HHHHHHHHTTCCEEEEECSEEETHHHHHHHSSSEEEEETTCEEESCCCTTCCSCCSSSSCCHHHHHHHHHHHHTT--CCC
T ss_pred             HHHHHHhhcCCCeEEEecCCccccceeccccceeEEecCCeEEEEECHHHhcccchhhhhhhhhHHHHHhhhccc--ccc
Confidence            122345667899999999999999988888888888888887765  3222233332222221222221 11111  345


Q ss_pred             CcccHHHHH--HcCccceecCCC
Q 016290          174 ARLNGKELV--AAGLATHFVPSE  194 (392)
Q Consensus       174 ~~l~a~eA~--~~GLv~~vv~~~  194 (392)
                      +.+.+.+..  ..|+++.+++++
T Consensus       249 eeLGGa~~H~~~sG~~d~v~~~e  271 (287)
T d1pixa2         249 EPPGAVDIHYTETGFMREVYASE  271 (287)
T ss_dssp             CCSSBHHHHTTTSCCSCEEESSH
T ss_pred             cccccHHHhhhhcccceeecCCH
Confidence            666777654  469999998764

>d1on3a1 c.14.1.4 (A:8-260) Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S) {Propionibacterium freudenreichii [TaxId: 1744]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S)
species: Propionibacterium freudenreichii [TaxId: 1744]

Probab=96.31  E-value=0.013  Score=51.92  Aligned_cols=140  Identities=14%  Similarity=0.149  Sum_probs=85.6

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhHHHHHHHHHHHHHH
Q 016290           22 VRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYWLCHH  101 (392)
Q Consensus        22 v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~~~~~~~~~l~~~  101 (392)
                      |.++-.+--=+.-+++......+..+.+.+.+. .+-+|.+.-     |+|+-+.+-      ......+ ...+.....
T Consensus        91 v~v~a~Dftv~GGS~g~~~~~K~~~a~e~A~~~-~lPlV~l~~-----sgG~r~~eg------~~~l~~~-~~~~~~~~~  157 (253)
T d1on3a1          91 VHAASQDFTVMGGSAGETQSTKVVETMEQALLT-GTPFLFFYD-----SGGARIQEG------IDSLSGY-GKMFFANVK  157 (253)
T ss_dssp             EEEEEECTTTGGGCBCHHHHHHHHHHHHHHHHH-TCCEEEEEE-----ECSBCGGGT------HHHHHHH-HHHHHHHHH
T ss_pred             chhhhchhhhhcccceecccchhhhhHHHHhhc-CCCeEEEEe-----cCCCccccc------ceecccc-ceehHHHHH
Confidence            333344444356788999999999999888765 456666643     334444321      1111111 111222223


Q ss_pred             HHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcchHHHHHHhhcCCcccHH--
Q 016290          102 IHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHLGEFLALTGARLNGK--  179 (392)
Q Consensus       102 i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G~~a~~L~ltG~~l~a~--  179 (392)
                      +.. ..|+|+++.|+|.||+......||++|+++.+.+++.-      |.     .+.          ..||+.++.+  
T Consensus       158 ls~-~vP~i~vv~Gp~~GG~a~~~~~~d~vi~~~~a~i~~aG------P~-----vVe----------~~~ge~~~~eel  215 (253)
T d1on3a1         158 LSG-VVPQIAIIAGPCAGGASYSPALTDFIIMTKKAHMFITG------PQ-----VIK----------SVTGEDVTADEL  215 (253)
T ss_dssp             HTT-TSCEEEEEEEEEESGGGHHHHHSSEEEEETTCEEESSC------HH-----HHH----------HHHCCCCCHHHH
T ss_pred             Hhc-cceEEEEEecCcccceeeccchhhheeccccceEEecC------cc-----hhh----------hhhCCcCChHhc
Confidence            333 48999999999999999999999999999877655411      11     111          1345655543  


Q ss_pred             ---HH--HHcCccceecCCCCh
Q 016290          180 ---EL--VAAGLATHFVPSEKL  196 (392)
Q Consensus       180 ---eA--~~~GLv~~vv~~~~l  196 (392)
                         +.  ...|++|.++++++.
T Consensus       216 Gga~~h~~~sG~iD~v~~~e~~  237 (253)
T d1on3a1         216 GGAEAHMAISGNIHFVAEDDDA  237 (253)
T ss_dssp             HSHHHHHHTTCCCSEEESSHHH
T ss_pred             cCHHHhhhccccceEEECCHHH
Confidence               32  357999999988654

>d1vrga2 c.14.1.4 (A:252-515) Propionyl-CoA carboxylase complex B subunit, PccB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Propionyl-CoA carboxylase complex B subunit, PccB
species: Thermotoga maritima [TaxId: 2336]

Probab=95.21  E-value=0.043  Score=48.77  Aligned_cols=160  Identities=11%  Similarity=0.060  Sum_probs=99.2

Q ss_pred             EeCCEEEEEEcCCC-CCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhHHHHHHHHH
Q 016290           18 EIGNVRLVTLNRPR-QLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMY   96 (392)
Q Consensus        18 ~~~~v~~itLnrp~-~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~~~~~~~~   96 (392)
                      ..|...-|.-|+|. ..-+|+.+-.+...+.++.++.. ++-.|.|.-. ..|..|-+-..           ....+..-
T Consensus        64 ~~G~~vgvian~~~~~~G~~~~~~a~Kaa~fi~lc~~~-~iPli~l~Dt-pGf~~G~~~E~-----------~g~~~~ga  130 (264)
T d1vrga2          64 IQGKTVGIVANQPSVLAGVLDIDSSDKAARFIRFLDAF-NIPILTFVDT-PGYLPGVAQEH-----------GGIIRHGA  130 (264)
T ss_dssp             ETTEEEEEEEECTTSGGGCBCHHHHHHHHHHHHHHHHT-TCCEEEEEEE-CCBCCCHHHHH-----------TTHHHHHH
T ss_pred             ecCceEEEEeccccccccchhhhhHHHHHHHHHHHHHh-CCceEEEeec-ccccccHHHHH-----------HhHHHHHH
Confidence            34443334456664 33579999999999999988774 6777777543 23444432221           23445567


Q ss_pred             HHHHHHHhcCCeEEEEecCceecccccccc-----cCceEEEeCCeeeeccccccCccCCchhHHHHhhcc-------hH
Q 016290           97 WLCHHIHTYKKTQVALAHGITMGGGASLMV-----PLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLP-------GH  164 (392)
Q Consensus        97 ~l~~~i~~~~kP~IA~v~G~a~GgG~~lal-----~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~-------G~  164 (392)
                      ++++.++.+..|.|+++=|.+.|||. +++     .+|++++.       |...+|+...-|+...+.+.-       ..
T Consensus       131 ~~~~a~a~~~vP~i~viir~~yG~g~-~am~~~~~~~d~~~aw-------P~a~~~vm~pe~aa~v~~~~~l~~~~~~~~  202 (264)
T d1vrga2         131 KLLYAYSEATVPKITVILRKAYGGAY-IAMGSKHLGADMVLAW-------PSAEIAVMGPEGAANIIFKREIEASSNPEE  202 (264)
T ss_dssp             HHHHHHHHCCSCEEEEEEEEEEHHHH-HHTTCGGGTCSEEEEC-------TTCEEESSCHHHHHHHHTHHHHHHSSCHHH
T ss_pred             HHHHHHhcCCCCEEEEEeCCcccHHh-hhccCCccCCCeeeec-------cceeEEecCHHHhhhhhhhhhhhhhhCcHH
Confidence            89999999999999999999998875 333     46665555       555556654445544443321       01


Q ss_pred             HHHHH--hhcCCcccHHHHHHcCccceecCCCChHH
Q 016290          165 LGEFL--ALTGARLNGKELVAAGLATHFVPSEKLPE  198 (392)
Q Consensus       165 ~a~~L--~ltG~~l~a~eA~~~GLv~~vv~~~~l~~  198 (392)
                      .-..+  .+.-+.-++..+...|.+|.|+++.+...
T Consensus       203 ~~~~~~~~~~e~~~~~~~aa~~g~iD~VIdP~dTR~  238 (264)
T d1vrga2         203 TRRKLIEEYKQQFANPYIAASRGYVDMVIDPRETRK  238 (264)
T ss_dssp             HHHHHHHHHHHHTSSHHHHHHTTSSSEECCGGGHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHcCCCCeeECHHHHHH
Confidence            00000  01112236777889999999998877543

>d2a7sa2 c.14.1.4 (A:278-548) Propionyl-CoA carboxylase complex B subunit, PccB {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Propionyl-CoA carboxylase complex B subunit, PccB
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.06  E-value=0.088  Score=46.85  Aligned_cols=160  Identities=13%  Similarity=0.093  Sum_probs=101.0

Q ss_pred             eCCEEEEEEcCCCCC-CCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhHHHHHHHHHH
Q 016290           19 IGNVRLVTLNRPRQL-NVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYW   97 (392)
Q Consensus        19 ~~~v~~itLnrp~~l-Nal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~~~~~~~~~   97 (392)
                      +|...-|.-|+|... -+|+.+-.+...+.++.++.. ++-+|.|.-.. .|..|-+-..           ....+..-+
T Consensus        68 ~G~~vgvian~~~~~~G~~~~~~~~Ka~rfi~lc~~~-~iPlv~l~dtp-Gf~~G~~~E~-----------~g~~~~ga~  134 (271)
T d2a7sa2          68 DGRPVGIVANQPTHFAGCLDINASEKAARFVRTCDCF-NIPIVMLVDVP-GFLPGTDQEY-----------NGIIRRGAK  134 (271)
T ss_dssp             SSCEEEEEEECTTTGGGCBCHHHHHHHHHHHHHHHHT-TCCEEEEEEEC-CBCCCHHHHH-----------HCHHHHHHH
T ss_pred             CCeEEEEEeccccccCCCcCHHHHHHHHHHHHHHHHh-CCceEEeechh-hhhhhccHHH-----------hhHHHHHHH
Confidence            454444555666532 589999999999999988764 67888885432 3444432211           234455678


Q ss_pred             HHHHHHhcCCeEEEEecCceeccccc----ccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcc-hH--------
Q 016290           98 LCHHIHTYKKTQVALAHGITMGGGAS----LMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLP-GH--------  164 (392)
Q Consensus        98 l~~~i~~~~kP~IA~v~G~a~GgG~~----lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~-G~--------  164 (392)
                      +++.+..+..|.|+++=|.+.|||..    .++.+|++++.++       ..+|+.+.-|+...+.|.- ..        
T Consensus       135 ~~~a~a~~~vP~isvi~~~~~G~~~~am~~~~~~~d~~~AwP~-------A~igvMgpegaa~v~~~~~l~~~~~~~~~~  207 (271)
T d2a7sa2         135 LLYAYGEATVPKITVITRKAYGGAYCVMGSKDMGCDVNLAWPT-------AQIAVMGASGAVGFVYRQQLAEAAANGEDI  207 (271)
T ss_dssp             HHHHHHHCCSCEEEEEEEEEEHHHHHHTTCGGGTCSEEEECTT-------CEEESSCHHHHHHHHTTTTTTGGGTSSCCT
T ss_pred             HHHHHHhCCCCeEEEEeCCccchhhhhhcccccccceEEEecc-------eeEeecCHHHHHHHHHHHhhhhhhhcccch
Confidence            99999999999999999999998732    2234566655555       5555555445554444321 10        


Q ss_pred             ---HHH-HHhhcCCcccHHHHHHcCccceecCCCChHH
Q 016290          165 ---LGE-FLALTGARLNGKELVAAGLATHFVPSEKLPE  198 (392)
Q Consensus       165 ---~a~-~L~ltG~~l~a~eA~~~GLv~~vv~~~~l~~  198 (392)
                         ... ..-..-..-++..+.+.|.+|.||++.+...
T Consensus       208 ~~~~~~~~~e~~e~~~~p~~aa~~g~iD~VIdP~dTR~  245 (271)
T d2a7sa2         208 DKLRLRLQQEYEDTLVNPYVAAERGYVDAVIPPSHTRG  245 (271)
T ss_dssp             TSSTTHHHHHHHTTTSBSHHHHHHTSSSEECCGGGHHH
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHcCCCCeeECHHHHHH
Confidence               001 1111223346677888999999999877654

>d1on3a2 c.14.1.4 (A:261-524) Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S) {Propionibacterium freudenreichii [TaxId: 1744]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S)
species: Propionibacterium freudenreichii [TaxId: 1744]

Probab=94.99  E-value=0.086  Score=46.71  Aligned_cols=164  Identities=14%  Similarity=0.093  Sum_probs=101.4

Q ss_pred             EeCCEEEEEEcCCCC-CCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhHHHHHHHHH
Q 016290           18 EIGNVRLVTLNRPRQ-LNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMY   96 (392)
Q Consensus        18 ~~~~v~~itLnrp~~-lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~~~~~~~~   96 (392)
                      .+|...-|.=|+|.. ..+++.+-.+...+.++.++. -++-+|.|.-. ..|..|-+-..           ....+..-
T Consensus        64 i~G~~vgvian~~~~~~G~~~~~~a~Kaarfi~lc~~-~~iPlv~l~D~-pGf~~G~~~E~-----------~g~i~~ga  130 (264)
T d1on3a2          64 VNGRSVGIVANQPSVMSGCLDINASDKAAEFVNFCDS-FNIPLVQLVDV-PGFLPGVQQEY-----------GGIIRHGA  130 (264)
T ss_dssp             ETTEEEEEEEECTTSGGGCBCHHHHHHHHHHHHHHHH-TTCCEEEEEEE-CCBCCCHHHHH-----------TTHHHHHH
T ss_pred             EecceEEEEeccchhcccccChHHHHHHHHHHHHHHh-cCCceEEEecc-ccccccHHHHH-----------HHHHHHHH
Confidence            344333344466653 568999999999999998887 46777877543 23444433221           23455567


Q ss_pred             HHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcc-------h-HHHHH
Q 016290           97 WLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLP-------G-HLGEF  168 (392)
Q Consensus        97 ~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~-------G-~~a~~  168 (392)
                      ++++++.++..|.|+++=|.+.|||.--.+..++   ..+..|+.|-..+|..+.-|+...+-|.-       . .....
T Consensus       131 ~~~~a~a~~~vP~itvi~rkayG~g~~am~g~~~---~~d~~~aWP~A~~~vMg~Egaa~v~~~~el~a~~~~~~~~~~~  207 (264)
T d1on3a2         131 KMLYAYSEATVPKITVVLRKAYGGSYLAMCNRDL---GADAVYAWPSAEIAVMGAEGAANVIFRKEIKAADDPDAMRAEK  207 (264)
T ss_dssp             HHHHHHHHCCSCEEEEEEEEEEHHHHHTTTCGGG---TCSEEEECTTCEEESSCHHHHHHHHTHHHHHHSSCHHHHHHHH
T ss_pred             HHHHHHHcCCCCEEEEEeccccCccccccccccC---ChhheeeHHhhHhhhccHHHHHHHHHhhhhhhhhhhhhhhHHH
Confidence            8999999999999999999999987433222111   12344556666677766566665554421       0 01111


Q ss_pred             H-hhcCCcccHHHHHHcCccceecCCCChH
Q 016290          169 L-ALTGARLNGKELVAAGLATHFVPSEKLP  197 (392)
Q Consensus       169 L-~ltG~~l~a~eA~~~GLv~~vv~~~~l~  197 (392)
                      + -..-+.-++..+...|.+|.|+++.+..
T Consensus       208 ~~e~~~~~~~p~~aA~~g~iD~VIdP~eTR  237 (264)
T d1on3a2         208 IEEYQNAFNTPYVAAARGQVDDVIDPADTR  237 (264)
T ss_dssp             HHHHHHHHSSHHHHHHTTSSSEECCGGGHH
T ss_pred             HHHHHHHhcCHHHHHHcCCCCeeECHHHHH
Confidence            1 0111223466778889999999887754

>d1uyra2 c.14.1.4 (A:1815-2218) Acetyl-coenzyme A carboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Acetyl-coenzyme A carboxylase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.16  E-value=0.26  Score=45.87  Aligned_cols=113  Identities=18%  Similarity=0.226  Sum_probs=72.5

Q ss_pred             CCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhHHHHHHHHHHHHHHHHhcCCeEEEEe
Q 016290           34 NVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALA  113 (392)
Q Consensus        34 Nal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IA~v  113 (392)
                      -.+.++-.....+++..+.+..++-+|+|.-. +.|+.|-+-.           ....++..-++++.+.++..|+|++|
T Consensus       108 gv~~p~sA~K~A~~i~d~cd~~~lPLi~l~D~-pGF~~G~~~E-----------~~gilr~GA~iv~A~~~~~vP~i~vI  175 (404)
T d1uyra2         108 QVWHPNSAFKTAQAINDFNNGEQLPMMILANW-RGFSGGQRDM-----------FNEVLKYGSFIVDALVDYKQPIIIYI  175 (404)
T ss_dssp             TCBCHHHHHHHHHHHHHHHTTSCCCEEECCCC-CCBCC-----------------CTHHHHHHHHHHHHHTCCSCEEEEE
T ss_pred             CccCchHHHHHHHHHHHhhhccccceEEeecC-CcccCcHHHH-----------HHHHHHHHHHHHHHHHhcCCCEEEEE
Confidence            36778888899999988877667888887432 5677664311           12234455678999999999999999


Q ss_pred             --cCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhh
Q 016290          114 --HGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSR  160 (392)
Q Consensus       114 --~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~r  160 (392)
                        .|...||...+. .+.+ ....-..|+.|..++|..+.-|+.-.+-|
T Consensus       176 ~~~g~~~GGa~vv~-~~~~-~~~~~~~yAwP~a~~gVm~pEGav~I~fr  222 (404)
T d1uyra2         176 PPTGELRGGSWVVV-DPTI-NADQMEMYADVNARAGVLEPQGMVGIKFR  222 (404)
T ss_dssp             CTTCEEEHHHHHTT-CGGG-GTTTEEEEEETTCEEESSCHHHHHHHHSC
T ss_pred             eCCcccchhhhhcc-cCcc-CCccceEEECCccccccCChhhhhhheec
Confidence              677766554332 2111 01112357788888888877777665544

>d1pixa3 c.14.1.4 (A:288-586) Glutaconyl-CoA decarboxylase A subunit {Acidaminococcus fermentans [TaxId: 905]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Glutaconyl-CoA decarboxylase A subunit
species: Acidaminococcus fermentans [TaxId: 905]

Probab=93.55  E-value=0.68  Score=41.38  Aligned_cols=147  Identities=12%  Similarity=0.051  Sum_probs=91.1

Q ss_pred             CCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhHHHHHHHHHHHHHHHHhcCCeEEEEe
Q 016290           34 NVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALA  113 (392)
Q Consensus        34 Nal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IA~v  113 (392)
                      -+|+.+-.....+.++.++.. ++-+|.|.=. ..|-.|-+-.           .....+..-++++++..+..|.|+++
T Consensus        97 G~l~~~~a~K~~rfi~lc~~~-~iPlv~l~D~-pGf~~g~~~E-----------~~g~~r~ga~~~~a~~~~~VP~isvi  163 (299)
T d1pixa3          97 GKLYRQGLVKMNEFVTLCARD-RLPIVWIQDT-TGIDVGNDAE-----------KAELLGLGQSLIYSIQTSHIPQFEIT  163 (299)
T ss_dssp             TEECHHHHHHHHHHHHHHHHT-TCCEEEEECC-CEECCSHHHH-----------HTTHHHHHHHHHHHHHTCCCCEEEEE
T ss_pred             CccCHHHHHHHHHHHHHHHHc-CCeEEEEEeC-CCcccchHHH-----------hhhHHHHHHHHHHHHHhhcceeEEEE
Confidence            568999999999999998875 5777777432 2244442211           12234555678899999999999999


Q ss_pred             cCceeccccccc----ccCceEEEeCCeeeeccccccCccCCchhHHHHhhc-chHH-----------H--HHHhh-cCC
Q 016290          114 HGITMGGGASLM----VPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRL-PGHL-----------G--EFLAL-TGA  174 (392)
Q Consensus       114 ~G~a~GgG~~la----l~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl-~G~~-----------a--~~L~l-tG~  174 (392)
                      =|.+.|||.-..    ...|+++     .++.|-..+|..+.-|+...+.+. ....           .  ..+.- .-+
T Consensus       164 ~r~~~G~a~~am~g~~~~~~~~~-----~~awP~aeigvMg~E~aa~vl~~~el~~~~~~~~~~~e~~e~~~~~~~~~~~  238 (299)
T d1pixa3         164 LRKGTAAAHYVLGGPQGNDTNAF-----SIGTAATEIAVMNGETAATAMYSRRLAKDRKAGKDLQPTIDKMNNLIQAFYT  238 (299)
T ss_dssp             CSEEETTHHHHTTCTTCTTTEEE-----EEECTTCEEESSCHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHH
T ss_pred             ecccccccccccccCccCcccce-----ecCCCccccccccchhhheeehhhhhhhhhhhhhhhhHHHHHHHHHHHHHHH
Confidence            999999884322    2223222     234466667776555555444321 1100           0  01100 012


Q ss_pred             cccHHHHHHcCccceecCCCChHH
Q 016290          175 RLNGKELVAAGLATHFVPSEKLPE  198 (392)
Q Consensus       175 ~l~a~eA~~~GLv~~vv~~~~l~~  198 (392)
                      ..++..+...|++|.|+++.+...
T Consensus       239 ~~sp~~aAs~~~iD~IIDP~dTR~  262 (299)
T d1pixa3         239 KSRPKVCAELGLVDEIVDMNKIRG  262 (299)
T ss_dssp             TTSHHHHHHHTSSSEECCTTTHHH
T ss_pred             hcCHHHHHHhCCcCeeECHHHHHH
Confidence            346777889999999999988654

>d1xnya2 c.14.1.4 (A:268-530) Propionyl-CoA carboxylase complex B subunit, PccB {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Propionyl-CoA carboxylase complex B subunit, PccB
species: Streptomyces coelicolor [TaxId: 1902]

Probab=91.46  E-value=0.47  Score=41.67  Aligned_cols=157  Identities=15%  Similarity=0.110  Sum_probs=96.0

Q ss_pred             EeCCEEEEEEcCCC-CCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhHHHHHHHHH
Q 016290           18 EIGNVRLVTLNRPR-QLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMY   96 (392)
Q Consensus        18 ~~~~v~~itLnrp~-~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~~~~~~~~   96 (392)
                      .+|...-|.-|+|. .--+++.+-.+...+.++..+.. ++-+|.|.-.. .|-.|-+-.           .....+..-
T Consensus        62 i~G~~vgvia~~~~~~~G~~~~~~a~Ka~~fi~lc~~~-~iPli~l~d~p-Gf~~G~~~E-----------~~g~~~~ga  128 (263)
T d1xnya2          62 VEGRPVGIVANQPMQFAGCLDITASEKAARFVRTCDAF-NVPVLTFVDVP-GFLPGVDQE-----------HDGIIRRGA  128 (263)
T ss_dssp             ETTEEEEEEEECTTTGGGCBCHHHHHHHHHHHHHHHHT-TCCEEEEEEEC-CBCCCHHHH-----------HTTHHHHHH
T ss_pred             eccceEEEEecccceecCCcchhhHHHHHHHHHHHHHh-CCceEEeeccc-ccccchhHH-----------HHhHHHHHH
Confidence            34443334446554 33589999999999999988874 57777775432 244443221           123455567


Q ss_pred             HHHHHHHhcCCeEEEEecCceecccccccc----cCceEEEeCCeeeeccccccCccCCchhHHHHhhcch---------
Q 016290           97 WLCHHIHTYKKTQVALAHGITMGGGASLMV----PLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG---------  163 (392)
Q Consensus        97 ~l~~~i~~~~kP~IA~v~G~a~GgG~~lal----~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G---------  163 (392)
                      +++++++++..|.|+++=|.+.|||.....    ..|+++|.++       ..+|+.+.-|+...+.|.-.         
T Consensus       129 ~~~~a~a~~~vPkitvi~~~~~Gga~~~m~~~~~~~d~~~awP~-------a~~gvm~pe~aa~il~~~~~~~a~~~~~~  201 (263)
T d1xnya2         129 KLIFAYAEATVPLITVITRKAFGGAYDVMGSKHLGADLNLAWPT-------AQIAVMGAQGAVNILHRRTIADAGDDAEA  201 (263)
T ss_dssp             HHHHHHHHCCSCEEEEEEEEEEHHHHHHTTCGGGTCSEEEECTT-------CEEESSCHHHHHHHHTHHHHHSCCTTCSS
T ss_pred             HHHHHHHccCCCeEEEEecCccccceeccCCcccCCcEEEEcch-------hhhhccCHHHHHHHHHHHHHhhhccchHH
Confidence            899999999999999999999987754322    3456555554       55556554555554433211         


Q ss_pred             ---HH-HHHHhhcCCcccHHHHHHcCccceecCCCChH
Q 016290          164 ---HL-GEFLALTGARLNGKELVAAGLATHFVPSEKLP  197 (392)
Q Consensus       164 ---~~-a~~L~ltG~~l~a~eA~~~GLv~~vv~~~~l~  197 (392)
                         .. ..+.-   ...++..+...|.+|.|+++.+..
T Consensus       202 ~~~~~~~~~~~---~~~~p~~aA~~g~iD~VIdP~dTR  236 (263)
T d1xnya2         202 TRARLIQEYED---ALLNPYTAAERGYVDAVIMPSDTR  236 (263)
T ss_dssp             SHHHHHHHHHH---HHSSSHHHHHHTSSSEECCGGGHH
T ss_pred             HHHHHHHHHHH---HhcCHHHHHHcccCCcccCHHHHH
Confidence               00 01110   112345667788899998887654

>d1uyra1 c.14.1.4 (A:1482-1814) Acetyl-coenzyme A carboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Acetyl-coenzyme A carboxylase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.56  E-value=0.048  Score=49.91  Aligned_cols=37  Identities=16%  Similarity=0.055  Sum_probs=33.3

Q ss_pred             cCCeEEEEecCceecccccccccCceEEEeCCeeeec
Q 016290          105 YKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFST  141 (392)
Q Consensus       105 ~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~  141 (392)
                      -..|+|++|.|.|+|+|+-++..||++|+++++.+.+
T Consensus       239 ~~iptis~v~G~~vG~gAyl~~L~d~vIm~~~s~i~l  275 (333)
T d1uyra1         239 HDIFTITLVTCRSVGIGAYLVRLGQRAIQVEGQPIIL  275 (333)
T ss_dssp             HHSCEEEEESSCEETHHHHHHHHTCCEEEETTCCEES
T ss_pred             CCCCEEEEEeCCccccceeecccccEEEEeCCceEEe
Confidence            3689999999999999999999999999999876543