Citrus Sinensis ID: 016351
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 391 | 2.2.26 [Sep-21-2011] | |||||||
| Q9MAT5 | 383 | Protein arginine N-methyl | yes | no | 0.923 | 0.942 | 0.717 | 1e-161 | |
| Q9SNQ2 | 380 | Protein arginine N-methyl | yes | no | 0.920 | 0.947 | 0.686 | 1e-157 | |
| A2Y953 | 382 | Protein arginine N-methyl | N/A | no | 0.920 | 0.942 | 0.686 | 1e-157 | |
| A2XYY8 | 379 | Probable protein arginine | N/A | no | 0.780 | 0.804 | 0.375 | 2e-58 | |
| Q7XKC0 | 391 | Probable protein arginine | no | no | 0.780 | 0.780 | 0.375 | 6e-58 | |
| Q08A71 | 435 | Probable protein arginine | no | no | 0.782 | 0.703 | 0.365 | 5e-57 | |
| Q6NWG4 | 349 | Protein arginine N-methyl | yes | no | 0.785 | 0.879 | 0.382 | 6e-54 | |
| B0JYW5 | 340 | Protein arginine N-methyl | yes | no | 0.777 | 0.894 | 0.371 | 5e-52 | |
| Q8AV13 | 369 | Protein arginine N-methyl | N/A | no | 0.836 | 0.886 | 0.339 | 7e-51 | |
| Q6VRB0 | 351 | Protein arginine N-methyl | N/A | no | 0.782 | 0.871 | 0.358 | 9e-51 |
| >sp|Q9MAT5|ANM10_ARATH Protein arginine N-methyltransferase PRMT10 OS=Arabidopsis thaliana GN=PRMT10 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 569 bits (1467), Expect = e-161, Method: Compositional matrix adjust.
Identities = 259/361 (71%), Positives = 306/361 (84%)
Query: 31 TATVDKEVDFANYFCTYAFLYHQKEMLSDRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSG 90
+A VDKEVD+A YFCTY+FLYHQK+MLSDRVRMDAYFN++FQNKHHF+GKTVLDVGTGSG
Sbjct: 23 SAPVDKEVDYAQYFCTYSFLYHQKDMLSDRVRMDAYFNAVFQNKHHFEGKTVLDVGTGSG 82
Query: 91 ILAIWSAQAGARKVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIIS 150
ILAIWSAQAGARKVYAVEATKM+DHAR LVKANNL +VEVIEGSVEDI LPEKVDVIIS
Sbjct: 83 ILAIWSAQAGARKVYAVEATKMADHARALVKANNLDHIVEVIEGSVEDISLPEKVDVIIS 142
Query: 151 EWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHARMWVAPIRSGLGDQKQQDYEGALDD 210
EWMGYFLLRESMFDSVI ARDRWLKPTGVMYPSHARMW+API+S + D+K+ D++GA+ D
Sbjct: 143 EWMGYFLLRESMFDSVISARDRWLKPTGVMYPSHARMWLAPIKSNIADRKRNDFDGAMAD 202
Query: 211 WYSFLKETKTYYGVDMSVLTKPFSEEQKKYYLQTSLWSNLHPDQVIGTAAVVKNIDCSTA 270
W++F E K+YYGVDM VLTKPF+EEQ+KYY+QT++W++L+P Q+IGT +VK +DC TA
Sbjct: 203 WHNFSDEIKSYYGVDMGVLTKPFAEEQEKYYIQTAMWNDLNPQQIIGTPTIVKEMDCLTA 262
Query: 271 TVDDIREVRSKFLSSIRGEGTRLCGFSGWFDVHFRGSTEDPAQQEIELTTAPSTYNGTHW 330
+V +I EVRS S I E TRLCGF GWFDV F G EDPAQQEIELTTAPS + THW
Sbjct: 263 SVSEIEEVRSNVTSVINMEHTRLCGFGGWFDVQFSGRKEDPAQQEIELTTAPSEQHCTHW 322
Query: 331 GQQVFLFRPSVRVSEGDDLNVSFSMTRSKENHRLLEVEFSCEIRESTGQILPPIKNKFYI 390
GQQVF+ + V EGD+LN+ M+RSKENHRL+E+E +CEI+E++G K ++I
Sbjct: 323 GQQVFIMSNPINVEEGDNLNLGLLMSRSKENHRLMEIELNCEIKEASGNPKESFKKTYFI 382
Query: 391 E 391
E
Sbjct: 383 E 383
|
Methylates the guanidino nitrogens of arginyl residues in some proteins. Arabidopsis thaliana (taxid: 3702) EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: - |
| >sp|Q9SNQ2|ANM10_ORYSJ Protein arginine N-methyltransferase PRMT10 OS=Oryza sativa subsp. japonica GN=PRMT10 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 553 bits (1426), Expect = e-157, Method: Compositional matrix adjust.
Identities = 247/360 (68%), Positives = 307/360 (85%)
Query: 32 ATVDKEVDFANYFCTYAFLYHQKEMLSDRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGI 91
A VDKEVDFANYFCTY++LYHQKEML DRVRMDAY +++F+N HHF+GK VLDVGTGSGI
Sbjct: 21 AVVDKEVDFANYFCTYSYLYHQKEMLCDRVRMDAYHSAVFRNAHHFRGKVVLDVGTGSGI 80
Query: 92 LAIWSAQAGARKVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISE 151
LAIWSAQAGARKVYAVEAT M++HAR L +AN++ D+VEVI+GS+ED+VLPEKVDVIISE
Sbjct: 81 LAIWSAQAGARKVYAVEATNMAEHARELARANDVADIVEVIQGSMEDVVLPEKVDVIISE 140
Query: 152 WMGYFLLRESMFDSVICARDRWLKPTGVMYPSHARMWVAPIRSGLGDQKQQDYEGALDDW 211
WMGYFLLRESMFDSVICARDRWLKP GVMYPSHARMW+APIRS L + K +D E A+ DW
Sbjct: 141 WMGYFLLRESMFDSVICARDRWLKPDGVMYPSHARMWLAPIRSDLAENKMEDLEIAMHDW 200
Query: 212 YSFLKETKTYYGVDMSVLTKPFSEEQKKYYLQTSLWSNLHPDQVIGTAAVVKNIDCSTAT 271
F+++T++YYGV+M+VLTK + E +KYYL++++W+NLHP+QVIG AAV+K IDC TAT
Sbjct: 201 NLFVEDTESYYGVNMNVLTKAYRAEHEKYYLKSAIWNNLHPNQVIGQAAVIKEIDCLTAT 260
Query: 272 VDDIREVRSKFLSSIRGEGTRLCGFSGWFDVHFRGSTEDPAQQEIELTTAPSTYNGTHWG 331
VD+IREVR++ I+ + TRL +GWFDVHFRGS ++PA QE+EL+TAP GTHWG
Sbjct: 261 VDEIREVRAQVTMPIKLDMTRLAALAGWFDVHFRGSKQNPATQEVELSTAPDVNGGTHWG 320
Query: 332 QQVFLFRPSVRVSEGDDLNVSFSMTRSKENHRLLEVEFSCEIRESTGQILPPIKNKFYIE 391
QQVFL P ++V+EGD++ VSF+M RSKENHRL+++EF+ E+ ES+G+ LP I K Y+E
Sbjct: 321 QQVFLLTPPLKVNEGDNVKVSFTMVRSKENHRLMDMEFTYELHESSGKQLPAITTKIYLE 380
|
Methylates the guanidino nitrogens of arginyl residues in some proteins. Oryza sativa subsp. japonica (taxid: 39947) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|A2Y953|ANM10_ORYSI Protein arginine N-methyltransferase PRMT10 OS=Oryza sativa subsp. indica GN=PRMT10 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 553 bits (1426), Expect = e-157, Method: Compositional matrix adjust.
Identities = 247/360 (68%), Positives = 307/360 (85%)
Query: 32 ATVDKEVDFANYFCTYAFLYHQKEMLSDRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGI 91
A VDKEVDFANYFCTY++LYHQKEML DRVRMDAY +++F+N HHF+GK VLDVGTGSGI
Sbjct: 23 AVVDKEVDFANYFCTYSYLYHQKEMLCDRVRMDAYHSAVFRNAHHFRGKVVLDVGTGSGI 82
Query: 92 LAIWSAQAGARKVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISE 151
LAIWSAQAGARKVYAVEAT M++HAR L +AN++ D+VEVI+GS+ED+VLPEKVDVIISE
Sbjct: 83 LAIWSAQAGARKVYAVEATNMAEHARELARANDVADIVEVIQGSMEDVVLPEKVDVIISE 142
Query: 152 WMGYFLLRESMFDSVICARDRWLKPTGVMYPSHARMWVAPIRSGLGDQKQQDYEGALDDW 211
WMGYFLLRESMFDSVICARDRWLKP GVMYPSHARMW+APIRS L + K +D E A+ DW
Sbjct: 143 WMGYFLLRESMFDSVICARDRWLKPDGVMYPSHARMWLAPIRSDLAENKMEDLEIAMHDW 202
Query: 212 YSFLKETKTYYGVDMSVLTKPFSEEQKKYYLQTSLWSNLHPDQVIGTAAVVKNIDCSTAT 271
F+++T++YYGV+M+VLTK + E +KYYL++++W+NLHP+QVIG AAV+K IDC TAT
Sbjct: 203 NLFVEDTESYYGVNMNVLTKAYRAEHEKYYLKSAIWNNLHPNQVIGQAAVIKEIDCLTAT 262
Query: 272 VDDIREVRSKFLSSIRGEGTRLCGFSGWFDVHFRGSTEDPAQQEIELTTAPSTYNGTHWG 331
VD+IREVR++ I+ + TRL +GWFDVHFRGS ++PA QE+EL+TAP GTHWG
Sbjct: 263 VDEIREVRAQVTMPIKLDMTRLAALAGWFDVHFRGSKQNPATQEVELSTAPDVNGGTHWG 322
Query: 332 QQVFLFRPSVRVSEGDDLNVSFSMTRSKENHRLLEVEFSCEIRESTGQILPPIKNKFYIE 391
QQVFL P ++V+EGD++ VSF+M RSKENHRL+++EF+ E+ ES+G+ LP I K Y+E
Sbjct: 323 QQVFLLTPPLKVNEGDNVKVSFTMVRSKENHRLMDMEFTYELHESSGKQLPAITTKIYLE 382
|
Methylates the guanidino nitrogens of arginyl residues in some proteins. Oryza sativa subsp. indica (taxid: 39946) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|A2XYY8|ANM61_ORYSI Probable protein arginine N-methyltransferase 6.1 OS=Oryza sativa subsp. indica GN=PRMT6.1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 226 bits (576), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 133/354 (37%), Positives = 202/354 (57%), Gaps = 49/354 (13%)
Query: 43 YFCTYAFLYHQKEMLSDRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGAR 102
YF +Y+ + + M+ DRVR DAY ++I ++ +GK V+DVG G+GIL+++ A+AGA+
Sbjct: 48 YFQSYSHIGIHEAMIKDRVRTDAYRSAIMHHQKFIEGKVVMDVGCGTGILSVFCARAGAK 107
Query: 103 KVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMGYFLLRESM 162
VYAVEA++M+ AR +VKANNL D V V+ G VED+ + +KVDVIISEWMGY LL ESM
Sbjct: 108 CVYAVEASEMATQAREIVKANNLDDKVVVVHGRVEDVEVEDKVDVIISEWMGYMLLYESM 167
Query: 163 FDSVICARDRWLKPTGVMYPSHARMWVAPIRSGLGDQKQQDYEGALDDWYSFLKETKTYY 222
SV+ ARD+WLKP G++ PSHA +++API + + YEG++D W Y
Sbjct: 168 LPSVLFARDKWLKPGGLILPSHATLFMAPITNS------ERYEGSVDFW-------SDVY 214
Query: 223 GVDMSVLTKPFSEEQKKYYLQTSLWSNLHPDQVIGTAAVVKNIDCSTATVDDIREVRSKF 282
G++MS L P + KK+ + + + V+ VVK+IDC T ++++ + +K+
Sbjct: 215 GINMSALV-PLA---KKFTSEEPSIEIIGGENVLSWPFVVKHIDCYTFKAEELKSITTKY 270
Query: 283 -LSSIRGEGTRLCGFSGWFDVHFRGS------------------------TEDPAQQEIE 317
+SS+ + GF WF+V F G +EDP +
Sbjct: 271 KVSSMM--LAPIHGFGLWFEVEFNGPSNPTDKSPSDLNPLDVIRTKRRRGSEDP----VV 324
Query: 318 LTTAPSTYNGTHWGQQVFLFRPSVRVSEGDDLNVSFSMTRSKENHRLLEVEFSC 371
L+TAP THW Q + F + V + + S +++S+EN R L ++ C
Sbjct: 325 LSTAPED-EPTHWHQTILYFPDPIEVKQDQIIEGSVKVSQSEENPRFLNIQLDC 377
|
Arginine methyltransferase that can both catalyze the formation of omega-N monomethylarginine (MMA) and asymmetrical dimethylarginine (aDMA). Oryza sativa subsp. indica (taxid: 39946) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q7XKC0|ANM61_ORYSJ Probable protein arginine N-methyltransferase 6.1 OS=Oryza sativa subsp. japonica GN=PRMT6.1 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 224 bits (572), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 133/354 (37%), Positives = 201/354 (56%), Gaps = 49/354 (13%)
Query: 43 YFCTYAFLYHQKEMLSDRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGAR 102
YF +Y+ + + M+ DRVR DAY ++I ++ +GK V+DVG G+GIL+++ A+AGA+
Sbjct: 48 YFQSYSHIGIHEAMIKDRVRTDAYRSAIMHHQKFIEGKVVMDVGCGTGILSVFCARAGAK 107
Query: 103 KVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMGYFLLRESM 162
VYAVEA++M+ AR +VKANNL D V V+ G VED+ + +KVDVIISEWMGY LL ESM
Sbjct: 108 CVYAVEASEMATQAREIVKANNLDDKVVVVHGRVEDVEVEDKVDVIISEWMGYMLLYESM 167
Query: 163 FDSVICARDRWLKPTGVMYPSHARMWVAPIRSGLGDQKQQDYEGALDDWYSFLKETKTYY 222
SV+ ARD+WLKP G++ PSHA +++API + + YEG++D W Y
Sbjct: 168 LPSVLFARDKWLKPGGLILPSHATLFMAPITNS------ERYEGSVDFW-------SDVY 214
Query: 223 GVDMSVLTKPFSEEQKKYYLQTSLWSNLHPDQVIGTAAVVKNIDCSTATVDDIREVRSKF 282
G++MS L P + KK+ + + + V+ VVK+IDC T ++++ +K+
Sbjct: 215 GINMSALV-PLA---KKFTSEEPSIEIIGGENVLSWPFVVKHIDCYTFKAEELKSFTTKY 270
Query: 283 -LSSIRGEGTRLCGFSGWFDVHFRGS------------------------TEDPAQQEIE 317
+SS+ + GF WF+V F G +EDP +
Sbjct: 271 KVSSMM--LAPIHGFGLWFEVEFNGPSNPTDKSPSDLNPLDVIRKKRRRGSEDP----VV 324
Query: 318 LTTAPSTYNGTHWGQQVFLFRPSVRVSEGDDLNVSFSMTRSKENHRLLEVEFSC 371
L+TAP THW Q + F + V + + S +++S+EN R L ++ C
Sbjct: 325 LSTAPED-EPTHWHQTILYFPDPIEVKQDQIIEGSVKVSQSEENPRFLNIQLDC 377
|
Arginine methyltransferase that can both catalyze the formation of omega-N monomethylarginine (MMA) and asymmetrical dimethylarginine (aDMA). Oryza sativa subsp. japonica (taxid: 39947) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q08A71|ANM6_ARATH Probable protein arginine N-methyltransferase 6 OS=Arabidopsis thaliana GN=PRMT6 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 222 bits (565), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 131/358 (36%), Positives = 194/358 (54%), Gaps = 52/358 (14%)
Query: 43 YFCTYAFLYHQKEMLSDRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGAR 102
YF +YA + +EM+ DR R + Y +I Q++ +GK V+DVG G+GIL+I+ AQAGA+
Sbjct: 83 YFHSYAHVGIHEEMIKDRARTETYREAIMQHQSLIEGKVVVDVGCGTGILSIFCAQAGAK 142
Query: 103 KVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMGYFLLRESM 162
+VYAV+A+ ++ A+ +VKAN L D V V+ G VED+ + E+VDVIISEWMGY LL ESM
Sbjct: 143 RVYAVDASDIAVQAKEVVKANGLSDKVIVLHGRVEDVEIDEEVDVIISEWMGYMLLYESM 202
Query: 163 FDSVICARDRWLKPTGVMYPSHARMWVAPIRSGLGDQKQQDYEGALDDWYSFLKETKTYY 222
SVI ARDRWLKP G++ PSHA +++API Y ++D W + Y
Sbjct: 203 LGSVITARDRWLKPGGLILPSHATLYMAPI------SHPDRYSHSIDFW-------RNVY 249
Query: 223 GVDMSVLTKPFSEEQKKYYLQTSLWSNLHPDQVIGTAAVVKNIDCSTATVDDIREV--RS 280
G+DMS + + K+ + ++ + V+ VVK+IDC T + ++ V R
Sbjct: 250 GIDMSAMM----QLAKQCAFEEPSVESISGENVLTWPEVVKHIDCKTIKIQELDSVTARY 305
Query: 281 KFLSSIRGEGTRLCGFSGWFDVHFRGSTEDPAQQEIE----------------------- 317
KF S +R + GF+ WFDV F G PA+ E
Sbjct: 306 KFNSMMRAP---MHGFAFWFDVEFSGPASSPAKNTSETSIASGSSSISPSGEVNQKKRTN 362
Query: 318 ------LTTAPSTYNGTHWGQQVFLFRPSVRVSEGDDLNVSFSMTRSKENHRLLEVEF 369
L+T+P + THW Q + F + V + + S ++++SKEN R + +
Sbjct: 363 PSDALVLSTSPES-PPTHWQQTIVYFYDPIDVEQDQVIEGSVTLSQSKENKRFMNIHL 419
|
Arginine methyltransferase that can both catalyze the formation of omega-N monomethylarginine (MMA) and asymmetrical dimethylarginine (aDMA). Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q6NWG4|ANM6_DANRE Protein arginine N-methyltransferase 6 OS=Danio rerio GN=prmt6 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 211 bits (538), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 127/332 (38%), Positives = 192/332 (57%), Gaps = 25/332 (7%)
Query: 34 VDKEVDFANYFCTYAFLYHQKEMLSDRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILA 93
+D+ + YF +Y+ + +EM++D VR + Y IF+N +GK VLDVG G+G+L+
Sbjct: 11 LDRSTEDYMYFDSYSDVTIHEEMIADTVRTNTYRMGIFKNSKSIEGKVVLDVGAGTGVLS 70
Query: 94 IWSAQAGARKVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWM 153
++ AQAGARKVYAVEA+ ++D A +VK N ++D +EVI+ ++E I L EKVDVI+SEWM
Sbjct: 71 LFCAQAGARKVYAVEASSIADQAVKIVKLNQMEDRIEVIKSTLETIELAEKVDVIVSEWM 130
Query: 154 GYFLLRESMFDSVICARDRWLKPTGVMYPSHARMWVAPIRSGLGDQKQQDYEGALDDWYS 213
GY LL ESM +SVI ARD+WLKP G++ PS A +++API + EG LD W +
Sbjct: 131 GYALLHESMLNSVIFARDKWLKPGGLILPSRADLYIAPINDVV-------VEGRLDFWST 183
Query: 214 FLKETKTYYGVDMSVLTKPFSEEQKKYYLQTSLWSN-LHPDQVIGTAAVVKNIDCSTATV 272
K YGVDMS +T + +K + + N + + V+ +D +T T+
Sbjct: 184 ----VKGQYGVDMSCMT----DFARKCIMNKDITVNPVTVEDVLSHPCKFAELDLNTVTL 235
Query: 273 DDIREVRSKFLSSIRGEGTRLCGFSGWFDVHFRGSTEDPAQQE-IELTTAPSTYNGTHWG 331
+ +R+V F S + + + F WF V F PA+++ + L+T+P THW
Sbjct: 236 EQLRDVNGSF-SCVCFGSSSIHAFCVWFTVTF------PAEEKALVLSTSPFKAE-THWK 287
Query: 332 QQVFLFRPSVRVSEGDDLNVSFSMTRSKENHR 363
Q V +V V + + S+ S+EN R
Sbjct: 288 QAVLYLDDAVDVMQDTKVEGEISLYPSEENSR 319
|
Arginine methyltransferase that can both catalyze the formation of omega-N monomethylarginine (MMA) and asymmetrical dimethylarginine (aDMA), with a strong preference for the formation of aDMA. Preferentially methylates arginyl residues present in a glycine and arginine-rich domain and displays preference for monomethylated substrates. Specifically mediates the asymmetric dimethylation of histone H3 'Arg-2' to form H3R2me2a. H3R2me2a represents a specific tag for epigenetic transcriptional repression and is mutually exclusive with methylation on histone H3 'Lys-4' (H3K4me2 and H3K4me3). It thereby acts as a transcription corepressor of various genes such as hoxa2. Also methylates histone H2A and H4 'Arg-3' (H2AR3me and H4R3me, respectively). Acts as a regulator of DNA base excision during DNA repair by mediating the methylation of DNA polymerase beta (polb), leading to stimulate the polymerase activity by enhancing DNA binding and processivity. Methylates hmga1. Danio rerio (taxid: 7955) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 2 EC: 5 |
| >sp|B0JYW5|ANM6_XENTR Protein arginine N-methyltransferase 6 OS=Xenopus tropicalis GN=prmt6 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 205 bits (521), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 122/328 (37%), Positives = 186/328 (56%), Gaps = 24/328 (7%)
Query: 41 ANYFCTYAFLYHQKEMLSDRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAG 100
YF Y+ + +EM++D VR +AY ++ +N QGKTVLDVG G+GIL+++S QAG
Sbjct: 16 CEYFQCYSDVSVHEEMIADTVRTNAYKLALLRNHSSLQGKTVLDVGAGTGILSVFSVQAG 75
Query: 101 ARKVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMGYFLLRE 160
A+ VYAVEA+ MS A +VK+N++++ V+V+ SVE +PE+VD I+SEWMGY L+ E
Sbjct: 76 AQAVYAVEASSMSQLACQVVKSNDMENKVKVLNSSVESAEIPEQVDAIVSEWMGYALMYE 135
Query: 161 SMFDSVICARDRWLKPTGVMYPSHARMWVAPIRSGLGDQKQQDYEGALDDWYSFLKETKT 220
SM SVI ARD+WLKP G++ PS A +++AP+ + E LD W E K
Sbjct: 136 SMLPSVIYARDKWLKPGGLILPSCADLFIAPVNDLI-------VESRLDFW----SEVKG 184
Query: 221 YYGVDMSVLTKPFSEEQKKYYLQTSLWSNL-HPDQVIGTAAVVKNIDCSTATVDDIREVR 279
YGVDMS + + F+ + + + NL P+ V+ ++D + T +++R +
Sbjct: 185 MYGVDMSCM-QSFA---RSCIMNKEMAVNLVSPEDVLSFPVRFASLDLNVCTQEEVRNLH 240
Query: 280 SKFLSSIRGEGTRLCGFSGWFDVHFRGSTEDPAQQEIELTTAPSTYNGTHWGQQVFLFRP 339
F S G + L GF+ WF V F P + + L+T+P THW Q +
Sbjct: 241 GSFQFSCFG-SSLLHGFAVWFSVTF------PGENSVTLSTSPYG-EETHWKQTLLYLDE 292
Query: 340 SVRVSEGDDLNVSFSMTRSKENHRLLEV 367
V+V + ++ +++ S N R L V
Sbjct: 293 EVQVEQDTEITGDVTLSPSDINPRHLRV 320
|
Arginine methyltransferase that can both catalyze the formation of omega-N monomethylarginine (MMA) and asymmetrical dimethylarginine (aDMA), with a strong preference for the formation of aDMA. Preferentially methylates arginyl residues present in a glycine and arginine-rich domain and displays preference for monomethylated substrates. Specifically mediates the asymmetric dimethylation of histone H3 'Arg-2' to form H3R2me2a. H3R2me2a represents a specific tag for epigenetic transcriptional repression and is mutually exclusive with methylation on histone H3 'Lys-4' (H3K4me2 and H3K4me3). It thereby acts as a transcription corepressor of various genes such as hoxa2. Also methylates histone H2A and H4 'Arg-3' (H2AR3me and H4R3me, respectively). Acts as a regulator of DNA base excision during DNA repair by mediating the methylation of DNA polymerase beta (polb), leading to stimulate the polymerase activity by enhancing DNA binding and processivity. Methylates hmga1. Xenopus tropicalis (taxid: 8364) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 2 EC: 5 |
| >sp|Q8AV13|ANM1A_XENLA Protein arginine N-methyltransferase 1-A OS=Xenopus laevis GN=prmt1-a PE=1 SV=1 | Back alignment and function description |
|---|
Score = 201 bits (511), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 125/368 (33%), Positives = 194/368 (52%), Gaps = 41/368 (11%)
Query: 18 NGGGGGGGGRGGGTATVDKEVDFANYFCTYAFLYHQKEMLSDRVRMDAYFNSIFQNKHHF 77
N GG + K+ YF +YA +EML D VR Y NS+F N+H F
Sbjct: 30 NSAPPEGGVKTNAEDMTSKDY----YFDSYAHFGIHEEMLKDEVRTLTYRNSMFHNRHLF 85
Query: 78 QGKTVLDVGTGSGILAIWSAQAGARKVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVE 137
+ K VLDVG+G+GIL +++A+AGA+KV +E + +SD+A +VKAN L VV +I+G VE
Sbjct: 86 KDKVVLDVGSGTGILCMFAAKAGAKKVIGIECSSISDYAIKIVKANKLDHVVTIIKGKVE 145
Query: 138 DIVLP-EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHARMWVAPIRSGL 196
++ LP EKVD+IISEWMGY L ESM ++VI ARD+WL P G+++P A +++ I
Sbjct: 146 EVELPVEKVDIIISEWMGYCLFYESMLNTVIYARDKWLTPDGLIFPDRATLYITAIE--- 202
Query: 197 GDQKQQDYEGALDDWYSFLKETKTYYGVDMSVLTKPFSEEQKKYYLQTSLWSNLHPDQVI 256
D++ +DY+ W+ + YG DMS + K ++ L + P Q++
Sbjct: 203 -DRQYKDYKIH---WW------ENVYGFDMSCI--------KDVAIKEPLVDVVDPKQLV 244
Query: 257 GTAAVVKNIDCSTATVDDIREVRSKFLSSIRGEGTRLCGFSGWFDVHFRGSTEDPAQQEI 316
A ++K +D T VDD+ S F ++ + +F++ F +
Sbjct: 245 SNACLIKEVDIYTVKVDDL-SFTSPFCLQVK-RNDYIHALVAYFNIEFTR-----CHKRT 297
Query: 317 ELTTAPSTYNGTHWGQQVFLFRPSVRVSEGDDLNVSFSMTRSKENHRLLEVEFS------ 370
+T+P + THW Q VF + V G+++ + M + +N+R L+ F
Sbjct: 298 GFSTSPES-PYTHWKQTVFYMEDYLTVKTGEEIFGTIGMKPNAKNNRDLDFTFDIDFKGQ 356
Query: 371 -CEIREST 377
CE+ ST
Sbjct: 357 LCELSCST 364
|
Arginine methyltransferase that methylates (mono and asymmetric dimethylation) the guanidino nitrogens of arginyl residues present in target proteins. Constitutes the main enzyme that mediates monomethylation and asymmetric dimethylation of histone H4 'Arg-4' (H4R3me1 and H4R3me2a, respectively), a specific tag for epigenetic transcriptional activation. Methylates ilf3 to regulate its DNA-binding activity. Required for neural induction, playing a key role in the control of epidermal versus neural cell fate choice. Methylates cirbp to regulate its subcellular location. Acts transiently during metamorphosis as a transcription coactivator, enhancing thyroid hormone (T3) receptor (TR)-mediated transcription by enhancing TR binding to the T3 response element (TRE), and histone modification through recruitment of other coactivators. Xenopus laevis (taxid: 8355) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 2 EC: 5 |
| >sp|Q6VRB0|ANM1B_XENLA Protein arginine N-methyltransferase 1-B OS=Xenopus laevis GN=prmt1-b PE=2 SV=1 | Back alignment and function description |
|---|
Score = 201 bits (511), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 123/343 (35%), Positives = 189/343 (55%), Gaps = 37/343 (10%)
Query: 43 YFCTYAFLYHQKEMLSDRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGAR 102
YF +YA +EML D VR Y NS+F N+H F+ K VLDVG+G+GIL +++A+AGA+
Sbjct: 33 YFDSYAHFGIHEEMLKDEVRTLTYRNSMFHNRHLFKDKVVLDVGSGTGILCMFAAKAGAK 92
Query: 103 KVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIISEWMGYFLLRES 161
KV +E + +SD+A +VKAN L VV +I+G VE++ LP EKVD+IISEWMGY L ES
Sbjct: 93 KVIGIECSSISDYAIKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGYCLFYES 152
Query: 162 MFDSVICARDRWLKPTGVMYPSHARMWVAPIRSGLGDQKQQDYEGALDDWYSFLKETKTY 221
M ++VI ARD+WL P G+++P A ++V I D++ +DY+ W+ +
Sbjct: 153 MLNTVIYARDKWLNPDGLIFPDRATLYVTAIE----DRQYKDYKIH---WW------ENV 199
Query: 222 YGVDMSVLTKPFSEEQKKYYLQTSLWSNLHPDQVIGTAAVVKNIDCSTATVDDIREVRSK 281
YG DMS + K ++ L + P Q++ A ++K +D T VDD+
Sbjct: 200 YGFDMSCI--------KDVAIKEPLVDVVDPKQLVSNACLIKEVDIYTVKVDDLTFTSPF 251
Query: 282 FLSSIRGEGTRLCGFSGWFDVHFRGSTEDPAQQEIELTTAPSTYNGTHWGQQVFLFRPSV 341
L R + +F++ F + +T+P + THW Q VF +
Sbjct: 252 CLQVKRNDYIH--AMVAYFNIEFTR-----CHKRTGFSTSPES-PYTHWKQTVFYMEDYL 303
Query: 342 RVSEGDDLNVSFSMTRSKENHRLL----EVEFS---CEIREST 377
V G+++ + SM + +N+R L +++F CE+ ST
Sbjct: 304 TVKTGEEIFGTISMKPNAKNNRDLDFTVDIDFKGQLCELSCST 346
|
Arginine methyltransferase that methylates (mono and asymmetric dimethylation) the guanidino nitrogens of arginyl residues present in target proteins. Constitutes the main enzyme that mediates monomethylation and asymmetric dimethylation of histone H4 'Arg-4' (H4R3me1 and H4R3me2a, respectively), a specific tag for epigenetic transcriptional activation. Methylates cirbp to regulate its subcellular location. Acts transiently during metamorphosis as a transcription coactivator, enhancing thyroid hormone (T3) receptor (TR)-mediated transcription by enhancing TR binding to the T3 response element (TRE), and histone modification through recruitment of other coactivators (By similarity). Methylates ilf3 to regulate its DNA-binding activity. Methylates histone H4. Required for neural induction, playing a key role in the control of epidermal versus neural cell fate choice. Xenopus laevis (taxid: 8355) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 2 EC: 5 |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 391 | ||||||
| 225445416 | 381 | PREDICTED: probable protein arginine N-m | 0.974 | 1.0 | 0.774 | 1e-180 | |
| 224114359 | 380 | hypothetical protein POPTRDRAFT_746911 [ | 0.918 | 0.944 | 0.799 | 1e-175 | |
| 449464586 | 379 | PREDICTED: probable protein arginine N-m | 0.964 | 0.994 | 0.767 | 1e-174 | |
| 363806714 | 374 | uncharacterized protein LOC100790625 [Gl | 0.936 | 0.978 | 0.777 | 1e-172 | |
| 356508346 | 374 | PREDICTED: probable protein arginine N-m | 0.936 | 0.978 | 0.771 | 1e-171 | |
| 297738912 | 337 | unnamed protein product [Vitis vinifera] | 0.859 | 0.997 | 0.804 | 1e-162 | |
| 297848734 | 372 | arginine N-methyltransferase family prot | 0.951 | 1.0 | 0.701 | 1e-161 | |
| 18390448 | 383 | putative protein arginine N-methyltransf | 0.923 | 0.942 | 0.717 | 1e-160 | |
| 353251757 | 376 | Chain C, A Uniquely Open Conformation Re | 0.923 | 0.960 | 0.717 | 1e-160 | |
| 16930707 | 383 | At1g04870/F13M7_12 [Arabidopsis thaliana | 0.923 | 0.942 | 0.717 | 1e-159 |
| >gi|225445416|ref|XP_002285026.1| PREDICTED: probable protein arginine N-methyltransferase 4.2 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 635 bits (1639), Expect = e-180, Method: Compositional matrix adjust.
Identities = 303/391 (77%), Positives = 334/391 (85%), Gaps = 10/391 (2%)
Query: 1 MGSHTNGVVSGDLAGSSNGGGGGGGGRGGGTATVDKEVDFANYFCTYAFLYHQKEMLSDR 60
MGS GV +GD S NGGG +DK VDFANYFCTYAFLYHQKEMLSDR
Sbjct: 1 MGSSAPGV-AGDRTASINGGGA---------TVIDKGVDFANYFCTYAFLYHQKEMLSDR 50
Query: 61 VRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEATKMSDHARTLV 120
VRMDAY+N+IF+NKHHF+GK VLDVGTGSGILAIWSAQAGARKVYAVEATKMS+HAR LV
Sbjct: 51 VRMDAYYNAIFENKHHFRGKAVLDVGTGSGILAIWSAQAGARKVYAVEATKMSEHARELV 110
Query: 121 KANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVM 180
KANNLQD+VEVIEGSVED+ LPEKVDVIISEWMGYFLLRESMFDSVI ARDRWLKPTGVM
Sbjct: 111 KANNLQDIVEVIEGSVEDVTLPEKVDVIISEWMGYFLLRESMFDSVISARDRWLKPTGVM 170
Query: 181 YPSHARMWVAPIRSGLGDQKQQDYEGALDDWYSFLKETKTYYGVDMSVLTKPFSEEQKKY 240
YPSHARMW+APIRSGL DQK+ DYEG+++DW F+ ETK YGVDMSVLTKPFSEEQ+KY
Sbjct: 171 YPSHARMWMAPIRSGLVDQKKNDYEGSMNDWLCFVNETKNDYGVDMSVLTKPFSEEQRKY 230
Query: 241 YLQTSLWSNLHPDQVIGTAAVVKNIDCSTATVDDIREVRSKFLSSIRGEGTRLCGFSGWF 300
YLQTSLW+NLHP QV+GTAA++K IDC TATVDDI EVRS F SSI E TRLCGF GWF
Sbjct: 231 YLQTSLWNNLHPHQVVGTAAIIKEIDCLTATVDDICEVRSNFSSSILIENTRLCGFGGWF 290
Query: 301 DVHFRGSTEDPAQQEIELTTAPSTYNGTHWGQQVFLFRPSVRVSEGDDLNVSFSMTRSKE 360
DVHFRG +++PAQQEIELTTAPS + THWGQQVFL P R SEGDD+NVSF M RSKE
Sbjct: 291 DVHFRGRSDNPAQQEIELTTAPSLDSSTHWGQQVFLLHPPFRTSEGDDVNVSFLMNRSKE 350
Query: 361 NHRLLEVEFSCEIRESTGQILPPIKNKFYIE 391
NHRL+EV+ CEIR+S+G++LP KNKFYIE
Sbjct: 351 NHRLMEVDLGCEIRQSSGKLLPLFKNKFYIE 381
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224114359|ref|XP_002332378.1| hypothetical protein POPTRDRAFT_746911 [Populus trichocarpa] gi|222832202|gb|EEE70679.1| hypothetical protein POPTRDRAFT_746911 [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 621 bits (1602), Expect = e-175, Method: Compositional matrix adjust.
Identities = 287/359 (79%), Positives = 322/359 (89%)
Query: 33 TVDKEVDFANYFCTYAFLYHQKEMLSDRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGIL 92
VDK VDFA YFCTYAFLYHQKEMLSDRVRMDAYFN+IF+NKHHF+GKTVLDVGTGSGIL
Sbjct: 22 AVDKGVDFAQYFCTYAFLYHQKEMLSDRVRMDAYFNAIFENKHHFKGKTVLDVGTGSGIL 81
Query: 93 AIWSAQAGARKVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEW 152
A+WSAQAGARKVYAVEAT MS HA+ LVKANNLQDVVEV+EGS+ED+ LPE+VDVIISEW
Sbjct: 82 AMWSAQAGARKVYAVEATTMSGHAQALVKANNLQDVVEVLEGSMEDVTLPEQVDVIISEW 141
Query: 153 MGYFLLRESMFDSVICARDRWLKPTGVMYPSHARMWVAPIRSGLGDQKQQDYEGALDDWY 212
MGYFLLRESMFDSVICARDRWLKP GVMYPSHARMW+APIRSGLGDQK+ DY+G+++DW+
Sbjct: 142 MGYFLLRESMFDSVICARDRWLKPGGVMYPSHARMWMAPIRSGLGDQKKSDYDGSMNDWH 201
Query: 213 SFLKETKTYYGVDMSVLTKPFSEEQKKYYLQTSLWSNLHPDQVIGTAAVVKNIDCSTATV 272
+F+++TK YYGVDMSVLTKPFSEEQ KYYLQTSLW NLHP QVIGTAA++K IDC TATV
Sbjct: 202 AFMEDTKEYYGVDMSVLTKPFSEEQMKYYLQTSLWQNLHPHQVIGTAAIIKEIDCLTATV 261
Query: 273 DDIREVRSKFLSSIRGEGTRLCGFSGWFDVHFRGSTEDPAQQEIELTTAPSTYNGTHWGQ 332
+DI +V+S FLSSI E TRLCGF GWFDVHFRGS +PAQQEIELTTAPS N THWGQ
Sbjct: 262 NDILKVKSDFLSSITLENTRLCGFGGWFDVHFRGSKVNPAQQEIELTTAPSVDNSTHWGQ 321
Query: 333 QVFLFRPSVRVSEGDDLNVSFSMTRSKENHRLLEVEFSCEIRESTGQILPPIKNKFYIE 391
QVFL P V VSEGD ++VSF+M RSKENHRL+EVE CEI++S+G+ PP +NKFYIE
Sbjct: 322 QVFLLHPPVHVSEGDAISVSFTMDRSKENHRLMEVELGCEIKQSSGKQPPPSRNKFYIE 380
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449464586|ref|XP_004150010.1| PREDICTED: probable protein arginine N-methyltransferase 4.2-like [Cucumis sativus] gi|449525602|ref|XP_004169805.1| PREDICTED: probable protein arginine N-methyltransferase 4.2-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 619 bits (1595), Expect = e-174, Method: Compositional matrix adjust.
Identities = 290/378 (76%), Positives = 323/378 (85%), Gaps = 1/378 (0%)
Query: 15 GSSNGGGGGGGGRGGGTATVDKEVDFANYFCTYAFLYHQKEMLSDRVRMDAYFNSIFQNK 74
GSS+ G G G VDK VDFA YFCTYAFLYHQKEML DRVRMDAYFN+IF+NK
Sbjct: 2 GSSSNGLGDRSAATNGALQVDKGVDFAQYFCTYAFLYHQKEMLCDRVRMDAYFNAIFKNK 61
Query: 75 HHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEATKMSDHARTLVKANNLQDVVEVIEG 134
HHF+GKTVLDVGTGSGILAIWSAQAGARKVYAVEAT+MS+HAR L+KANNLQ +++VIEG
Sbjct: 62 HHFEGKTVLDVGTGSGILAIWSAQAGARKVYAVEATRMSEHARALIKANNLQHIIDVIEG 121
Query: 135 SVEDIVLPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHARMWVAPIRS 194
S+ED+VLPEKVDVIISEWMGYFLLRESMFDSVI ARD WLKP GVMYPSHARMWVAPIRS
Sbjct: 122 SMEDVVLPEKVDVIISEWMGYFLLRESMFDSVIYARDHWLKPCGVMYPSHARMWVAPIRS 181
Query: 195 GLGDQKQQDYEGALDDWYSFLKETKTYYGVDMSVLTKPFSEEQKKYYLQTSLWSNLHPDQ 254
LGDQK DYEGA+DDWY+F+ +TKT YGVDMSVLTKPFSEEQ+KYYLQTSLW+NLHP Q
Sbjct: 182 KLGDQKMNDYEGAMDDWYNFVADTKTDYGVDMSVLTKPFSEEQRKYYLQTSLWNNLHPQQ 241
Query: 255 VIGTAAVVKNIDCSTATVDDIREVRSKFLSSIRGEGTRLCGFSGWFDVHFRGSTEDPAQQ 314
+IGTAAV+K+IDC TATV++I EV+S FLS+I E TR CG+ GWFDVHFRG EDPAQ
Sbjct: 242 IIGTAAVIKDIDCLTATVEEILEVKSSFLSTINSENTRFCGYGGWFDVHFRGRNEDPAQL 301
Query: 315 EIELTTAPSTYNGTHWGQQVFLFRPSVRVSEGDDLNVSFSMTRSKENHRLLEVEFSCEIR 374
EIELTTAPS NGTHWGQQVFL P + VSEGD+L VSF M RS ENHRL+EVEF CEI
Sbjct: 302 EIELTTAPSVSNGTHWGQQVFLLHPPIWVSEGDELKVSFFMKRSNENHRLMEVEFGCEIN 361
Query: 375 ESTGQI-LPPIKNKFYIE 391
+ +G++ P NKFYIE
Sbjct: 362 QPSGKLHQQPFTNKFYIE 379
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|363806714|ref|NP_001242269.1| uncharacterized protein LOC100790625 [Glycine max] gi|255644892|gb|ACU22946.1| unknown [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 610 bits (1573), Expect = e-172, Method: Compositional matrix adjust.
Identities = 286/368 (77%), Positives = 319/368 (86%), Gaps = 2/368 (0%)
Query: 24 GGGRGGGTATVDKEVDFANYFCTYAFLYHQKEMLSDRVRMDAYFNSIFQNKHHFQGKTVL 83
GGRGG A V K+VD+ANYFCTYAFLYHQKEMLSDRVRMDAYF++IFQNK HF GKTVL
Sbjct: 9 AGGRGG--APVPKDVDYANYFCTYAFLYHQKEMLSDRVRMDAYFDAIFQNKRHFAGKTVL 66
Query: 84 DVGTGSGILAIWSAQAGARKVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVEDIVLPE 143
DVGTGSGILAIWSAQAGARKVYAVEATKMS+HAR LVKANNLQDVVEVIEGS+E+I LPE
Sbjct: 67 DVGTGSGILAIWSAQAGARKVYAVEATKMSEHARALVKANNLQDVVEVIEGSMEEITLPE 126
Query: 144 KVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHARMWVAPIRSGLGDQKQQD 203
KVDVIISEWMGYFLLRESMFDSVI ARDRWLKPTGVMYPSHARMW+APIR+G+ D K D
Sbjct: 127 KVDVIISEWMGYFLLRESMFDSVINARDRWLKPTGVMYPSHARMWMAPIRTGIVDHKLGD 186
Query: 204 YEGALDDWYSFLKETKTYYGVDMSVLTKPFSEEQKKYYLQTSLWSNLHPDQVIGTAAVVK 263
YE +DDW+ F+ ETKTYYGVDMS LT+PFSEEQ+KYYLQTSLW+NLHP QV+GTA ++K
Sbjct: 187 YESTMDDWHHFVDETKTYYGVDMSTLTRPFSEEQRKYYLQTSLWNNLHPHQVVGTAGIIK 246
Query: 264 NIDCSTATVDDIREVRSKFLSSIRGEGTRLCGFSGWFDVHFRGSTEDPAQQEIELTTAPS 323
IDC TATV DI +VRS F SI + T+LCGF GWFDVHFRG +EDPA+QEIELTTAPS
Sbjct: 247 EIDCLTATVADIEKVRSDFSMSITVDNTKLCGFGGWFDVHFRGRSEDPAEQEIELTTAPS 306
Query: 324 TYNGTHWGQQVFLFRPSVRVSEGDDLNVSFSMTRSKENHRLLEVEFSCEIRESTGQILPP 383
GTHWGQQVFL + +SEGDDL VSF M+RSKENHRL+EVE CEI + +G++L P
Sbjct: 307 VNYGTHWGQQVFLLHSPMHLSEGDDLRVSFLMSRSKENHRLMEVELGCEIHQHSGKLLAP 366
Query: 384 IKNKFYIE 391
KNK+YIE
Sbjct: 367 FKNKYYIE 374
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356508346|ref|XP_003522918.1| PREDICTED: probable protein arginine N-methyltransferase 4.2-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 608 bits (1567), Expect = e-171, Method: Compositional matrix adjust.
Identities = 284/368 (77%), Positives = 319/368 (86%), Gaps = 2/368 (0%)
Query: 24 GGGRGGGTATVDKEVDFANYFCTYAFLYHQKEMLSDRVRMDAYFNSIFQNKHHFQGKTVL 83
GGRGG A V K+VD+ANYFCTYAFLYHQKEMLSDRVRMDAYFN+IF+NK HF GKTVL
Sbjct: 9 AGGRGG--APVPKDVDYANYFCTYAFLYHQKEMLSDRVRMDAYFNAIFENKRHFAGKTVL 66
Query: 84 DVGTGSGILAIWSAQAGARKVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVEDIVLPE 143
DVGTGSGILAIWSAQAGARKVYAVEATKMS+HAR L+KANNLQDVVEVIEGS+E++ LPE
Sbjct: 67 DVGTGSGILAIWSAQAGARKVYAVEATKMSEHARALIKANNLQDVVEVIEGSMEEVTLPE 126
Query: 144 KVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHARMWVAPIRSGLGDQKQQD 203
+VDVIISEWMGYFLLRESMFDSVI ARD WLKPTGVMYPSHARMW+APIR+G+ D K D
Sbjct: 127 RVDVIISEWMGYFLLRESMFDSVIHARDCWLKPTGVMYPSHARMWMAPIRTGIVDHKLGD 186
Query: 204 YEGALDDWYSFLKETKTYYGVDMSVLTKPFSEEQKKYYLQTSLWSNLHPDQVIGTAAVVK 263
YE +DDW++F+ ETKTYYGVDM LTKPFSEEQ+KYYLQTSLW++LHP QVIGTA ++K
Sbjct: 187 YESTMDDWHNFVDETKTYYGVDMGTLTKPFSEEQRKYYLQTSLWNSLHPHQVIGTAGIIK 246
Query: 264 NIDCSTATVDDIREVRSKFLSSIRGEGTRLCGFSGWFDVHFRGSTEDPAQQEIELTTAPS 323
IDC TATV DI +VRS F SI E T+LCGF GWFDVHFRG +EDPA+ EIELTTAPS
Sbjct: 247 EIDCLTATVADIEKVRSNFSMSITVENTKLCGFGGWFDVHFRGRSEDPAEHEIELTTAPS 306
Query: 324 TYNGTHWGQQVFLFRPSVRVSEGDDLNVSFSMTRSKENHRLLEVEFSCEIRESTGQILPP 383
GTHWGQQVFL P +R++EGDDL VSF M+RSKENHRL+EVE CEI + +G+IL P
Sbjct: 307 VDYGTHWGQQVFLLHPPMRLNEGDDLRVSFLMSRSKENHRLMEVELGCEIHQHSGKILAP 366
Query: 384 IKNKFYIE 391
KNK+YIE
Sbjct: 367 FKNKYYIE 374
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297738912|emb|CBI28157.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 576 bits (1485), Expect = e-162, Method: Compositional matrix adjust.
Identities = 271/337 (80%), Positives = 300/337 (89%), Gaps = 1/337 (0%)
Query: 56 MLSDRVRMDAYFNSIFQNKHHFQGK-TVLDVGTGSGILAIWSAQAGARKVYAVEATKMSD 114
MLSDRVRMDAY+N+IF+NKHHF+GK VLDVGTGSGILAIWSAQAGARKVYAVEATKMS+
Sbjct: 1 MLSDRVRMDAYYNAIFENKHHFRGKKAVLDVGTGSGILAIWSAQAGARKVYAVEATKMSE 60
Query: 115 HARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMGYFLLRESMFDSVICARDRWL 174
HAR LVKANNLQD+VEVIEGSVED+ LPEKVDVIISEWMGYFLLRESMFDSVI ARDRWL
Sbjct: 61 HARELVKANNLQDIVEVIEGSVEDVTLPEKVDVIISEWMGYFLLRESMFDSVISARDRWL 120
Query: 175 KPTGVMYPSHARMWVAPIRSGLGDQKQQDYEGALDDWYSFLKETKTYYGVDMSVLTKPFS 234
KPTGVMYPSHARMW+APIRSGL DQK+ DYEG+++DW F+ ETK YGVDMSVLTKPFS
Sbjct: 121 KPTGVMYPSHARMWMAPIRSGLVDQKKNDYEGSMNDWLCFVNETKNDYGVDMSVLTKPFS 180
Query: 235 EEQKKYYLQTSLWSNLHPDQVIGTAAVVKNIDCSTATVDDIREVRSKFLSSIRGEGTRLC 294
EEQ+KYYLQTSLW+NLHP QV+GTAA++K IDC TATVDDI EVRS F SSI E TRLC
Sbjct: 181 EEQRKYYLQTSLWNNLHPHQVVGTAAIIKEIDCLTATVDDICEVRSNFSSSILIENTRLC 240
Query: 295 GFSGWFDVHFRGSTEDPAQQEIELTTAPSTYNGTHWGQQVFLFRPSVRVSEGDDLNVSFS 354
GF GWFDVHFRG +++PAQQEIELTTAPS + THWGQQVFL P R SEGDD+NVSF
Sbjct: 241 GFGGWFDVHFRGRSDNPAQQEIELTTAPSLDSSTHWGQQVFLLHPPFRTSEGDDVNVSFL 300
Query: 355 MTRSKENHRLLEVEFSCEIRESTGQILPPIKNKFYIE 391
M RSKENHRL+EV+ CEIR+S+G++LP KNKFYIE
Sbjct: 301 MNRSKENHRLMEVDLGCEIRQSSGKLLPLFKNKFYIE 337
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297848734|ref|XP_002892248.1| arginine N-methyltransferase family protein [Arabidopsis lyrata subsp. lyrata] gi|297338090|gb|EFH68507.1| arginine N-methyltransferase family protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 574 bits (1479), Expect = e-161, Method: Compositional matrix adjust.
Identities = 266/379 (70%), Positives = 312/379 (82%), Gaps = 7/379 (1%)
Query: 13 LAGSSNGGGGGGGGRGGGTATVDKEVDFANYFCTYAFLYHQKEMLSDRVRMDAYFNSIFQ 72
+ S NGGGG +A VDKEVD+A YFCTY+FLYHQK+MLSDRVRMDAYFN++FQ
Sbjct: 1 MRSSQNGGGGP-------SAPVDKEVDYAQYFCTYSFLYHQKDMLSDRVRMDAYFNAVFQ 53
Query: 73 NKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEATKMSDHARTLVKANNLQDVVEVI 132
NKHHF+GKTVLDVGTGSGILAIWSAQAGARKVYAVEATKM+DHAR LVKANNL +VEVI
Sbjct: 54 NKHHFEGKTVLDVGTGSGILAIWSAQAGARKVYAVEATKMADHARALVKANNLDHIVEVI 113
Query: 133 EGSVEDIVLPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHARMWVAPI 192
EGSVEDI LPEKVDVIISEWMGYFLLRESMFDSVI ARDRWLKPTGVMYPSHARMW+API
Sbjct: 114 EGSVEDISLPEKVDVIISEWMGYFLLRESMFDSVISARDRWLKPTGVMYPSHARMWLAPI 173
Query: 193 RSGLGDQKQQDYEGALDDWYSFLKETKTYYGVDMSVLTKPFSEEQKKYYLQTSLWSNLHP 252
+S + D+K+ D++GA+ DW++F E K+YYGVDM VLTKPF+EEQ+KYY+QT++W++L+P
Sbjct: 174 KSNMADRKRNDFDGAMADWHNFSDEIKSYYGVDMGVLTKPFAEEQEKYYIQTAMWNDLNP 233
Query: 253 DQVIGTAAVVKNIDCSTATVDDIREVRSKFLSSIRGEGTRLCGFSGWFDVHFRGSTEDPA 312
Q+IGT +VK +DC TA+V +I EVRS S I E TRLCGF GWFDV F G EDPA
Sbjct: 234 QQIIGTPTIVKEMDCLTASVSEIEEVRSNVSSVINVEHTRLCGFGGWFDVQFLGRKEDPA 293
Query: 313 QQEIELTTAPSTYNGTHWGQQVFLFRPSVRVSEGDDLNVSFSMTRSKENHRLLEVEFSCE 372
QQEIELTTAPS + THWGQQVF+ + V EGD+LN+ M+RSKENHRL+E+E CE
Sbjct: 294 QQEIELTTAPSEQHCTHWGQQVFIMSNPINVEEGDNLNLGLVMSRSKENHRLMEIELKCE 353
Query: 373 IRESTGQILPPIKNKFYIE 391
I+ES+G K ++IE
Sbjct: 354 IKESSGNPKESFKKTYFIE 372
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|18390448|ref|NP_563720.1| putative protein arginine N-methyltransferase 4.2 [Arabidopsis thaliana] gi|75336166|sp|Q9MAT5.1|ANM10_ARATH RecName: Full=Protein arginine N-methyltransferase PRMT10 gi|7211979|gb|AAF40450.1|AC004809_8 Similar to protein arginine N-methyltransferase from Rattus norvegicus gb|U60882. ESTs gb|Z30908 and gb|Z29205 come from this gene [Arabidopsis thaliana] gi|22135775|gb|AAM91044.1| At1g04870/F13M7_12 [Arabidopsis thaliana] gi|332189633|gb|AEE27754.1| putative protein arginine N-methyltransferase 4.2 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 569 bits (1467), Expect = e-160, Method: Compositional matrix adjust.
Identities = 259/361 (71%), Positives = 306/361 (84%)
Query: 31 TATVDKEVDFANYFCTYAFLYHQKEMLSDRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSG 90
+A VDKEVD+A YFCTY+FLYHQK+MLSDRVRMDAYFN++FQNKHHF+GKTVLDVGTGSG
Sbjct: 23 SAPVDKEVDYAQYFCTYSFLYHQKDMLSDRVRMDAYFNAVFQNKHHFEGKTVLDVGTGSG 82
Query: 91 ILAIWSAQAGARKVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIIS 150
ILAIWSAQAGARKVYAVEATKM+DHAR LVKANNL +VEVIEGSVEDI LPEKVDVIIS
Sbjct: 83 ILAIWSAQAGARKVYAVEATKMADHARALVKANNLDHIVEVIEGSVEDISLPEKVDVIIS 142
Query: 151 EWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHARMWVAPIRSGLGDQKQQDYEGALDD 210
EWMGYFLLRESMFDSVI ARDRWLKPTGVMYPSHARMW+API+S + D+K+ D++GA+ D
Sbjct: 143 EWMGYFLLRESMFDSVISARDRWLKPTGVMYPSHARMWLAPIKSNIADRKRNDFDGAMAD 202
Query: 211 WYSFLKETKTYYGVDMSVLTKPFSEEQKKYYLQTSLWSNLHPDQVIGTAAVVKNIDCSTA 270
W++F E K+YYGVDM VLTKPF+EEQ+KYY+QT++W++L+P Q+IGT +VK +DC TA
Sbjct: 203 WHNFSDEIKSYYGVDMGVLTKPFAEEQEKYYIQTAMWNDLNPQQIIGTPTIVKEMDCLTA 262
Query: 271 TVDDIREVRSKFLSSIRGEGTRLCGFSGWFDVHFRGSTEDPAQQEIELTTAPSTYNGTHW 330
+V +I EVRS S I E TRLCGF GWFDV F G EDPAQQEIELTTAPS + THW
Sbjct: 263 SVSEIEEVRSNVTSVINMEHTRLCGFGGWFDVQFSGRKEDPAQQEIELTTAPSEQHCTHW 322
Query: 331 GQQVFLFRPSVRVSEGDDLNVSFSMTRSKENHRLLEVEFSCEIRESTGQILPPIKNKFYI 390
GQQVF+ + V EGD+LN+ M+RSKENHRL+E+E +CEI+E++G K ++I
Sbjct: 323 GQQVFIMSNPINVEEGDNLNLGLLMSRSKENHRLMEIELNCEIKEASGNPKESFKKTYFI 382
Query: 391 E 391
E
Sbjct: 383 E 383
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|353251757|pdb|3R0Q|C Chain C, A Uniquely Open Conformation Revealed In The Crystal Structure Of Arabidopsis Thaliana Protein Arginine Methyltransferase 10 gi|353251758|pdb|3R0Q|G Chain G, A Uniquely Open Conformation Revealed In The Crystal Structure Of Arabidopsis Thaliana Protein Arginine Methyltransferase 10 gi|353251759|pdb|3R0Q|A Chain A, A Uniquely Open Conformation Revealed In The Crystal Structure Of Arabidopsis Thaliana Protein Arginine Methyltransferase 10 gi|353251760|pdb|3R0Q|E Chain E, A Uniquely Open Conformation Revealed In The Crystal Structure Of Arabidopsis Thaliana Protein Arginine Methyltransferase 10 | Back alignment and taxonomy information |
|---|
Score = 569 bits (1466), Expect = e-160, Method: Compositional matrix adjust.
Identities = 259/361 (71%), Positives = 306/361 (84%)
Query: 31 TATVDKEVDFANYFCTYAFLYHQKEMLSDRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSG 90
+A VDKEVD+A YFCTY+FLYHQK+MLSDRVRMDAYFN++FQNKHHF+GKTVLDVGTGSG
Sbjct: 16 SAPVDKEVDYAQYFCTYSFLYHQKDMLSDRVRMDAYFNAVFQNKHHFEGKTVLDVGTGSG 75
Query: 91 ILAIWSAQAGARKVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIIS 150
ILAIWSAQAGARKVYAVEATKM+DHAR LVKANNL +VEVIEGSVEDI LPEKVDVIIS
Sbjct: 76 ILAIWSAQAGARKVYAVEATKMADHARALVKANNLDHIVEVIEGSVEDISLPEKVDVIIS 135
Query: 151 EWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHARMWVAPIRSGLGDQKQQDYEGALDD 210
EWMGYFLLRESMFDSVI ARDRWLKPTGVMYPSHARMW+API+S + D+K+ D++GA+ D
Sbjct: 136 EWMGYFLLRESMFDSVISARDRWLKPTGVMYPSHARMWLAPIKSNIADRKRNDFDGAMAD 195
Query: 211 WYSFLKETKTYYGVDMSVLTKPFSEEQKKYYLQTSLWSNLHPDQVIGTAAVVKNIDCSTA 270
W++F E K+YYGVDM VLTKPF+EEQ+KYY+QT++W++L+P Q+IGT +VK +DC TA
Sbjct: 196 WHNFSDEIKSYYGVDMGVLTKPFAEEQEKYYIQTAMWNDLNPQQIIGTPTIVKEMDCLTA 255
Query: 271 TVDDIREVRSKFLSSIRGEGTRLCGFSGWFDVHFRGSTEDPAQQEIELTTAPSTYNGTHW 330
+V +I EVRS S I E TRLCGF GWFDV F G EDPAQQEIELTTAPS + THW
Sbjct: 256 SVSEIEEVRSNVTSVINMEHTRLCGFGGWFDVQFSGRKEDPAQQEIELTTAPSEQHCTHW 315
Query: 331 GQQVFLFRPSVRVSEGDDLNVSFSMTRSKENHRLLEVEFSCEIRESTGQILPPIKNKFYI 390
GQQVF+ + V EGD+LN+ M+RSKENHRL+E+E +CEI+E++G K ++I
Sbjct: 316 GQQVFIMSNPINVEEGDNLNLGLLMSRSKENHRLMEIELNCEIKEASGNPKESFKKTYFI 375
Query: 391 E 391
E
Sbjct: 376 E 376
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|16930707|gb|AAL32019.1|AF436837_1 At1g04870/F13M7_12 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 568 bits (1463), Expect = e-159, Method: Compositional matrix adjust.
Identities = 259/361 (71%), Positives = 305/361 (84%)
Query: 31 TATVDKEVDFANYFCTYAFLYHQKEMLSDRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSG 90
+A VDKEVD+A YFCTY+FLYHQK+MLSDRVRMDAYFN++FQNKHHF+GKTVLDVGTGSG
Sbjct: 23 SAPVDKEVDYAQYFCTYSFLYHQKDMLSDRVRMDAYFNAVFQNKHHFEGKTVLDVGTGSG 82
Query: 91 ILAIWSAQAGARKVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIIS 150
ILAIWSAQAGARKVYAVEATKM+DHAR LVKANNL +VEVIEGSVEDI LPEKVDVIIS
Sbjct: 83 ILAIWSAQAGARKVYAVEATKMADHARALVKANNLDHIVEVIEGSVEDISLPEKVDVIIS 142
Query: 151 EWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHARMWVAPIRSGLGDQKQQDYEGALDD 210
EWMGYFLLRESMFDSVI ARDRWLKPTGVMYPSHARMW+API+S + D+K+ D++GA+ D
Sbjct: 143 EWMGYFLLRESMFDSVISARDRWLKPTGVMYPSHARMWLAPIKSNIADRKRNDFDGAMAD 202
Query: 211 WYSFLKETKTYYGVDMSVLTKPFSEEQKKYYLQTSLWSNLHPDQVIGTAAVVKNIDCSTA 270
W++F E K+YYGVDM VLTKPF+EEQ+KYY+QT++W++L+P Q+IGT +VK +DC TA
Sbjct: 203 WHNFSDEIKSYYGVDMGVLTKPFAEEQEKYYIQTAMWNDLNPQQIIGTPTIVKEMDCLTA 262
Query: 271 TVDDIREVRSKFLSSIRGEGTRLCGFSGWFDVHFRGSTEDPAQQEIELTTAPSTYNGTHW 330
+V +I EVRS S I E TRLCGF GWFDV F G EDPAQQEIELTTAPS + THW
Sbjct: 263 SVSEIEEVRSNVTSVINMEHTRLCGFGGWFDVQFSGRKEDPAQQEIELTTAPSEQHCTHW 322
Query: 331 GQQVFLFRPSVRVSEGDDLNVSFSMTRSKENHRLLEVEFSCEIRESTGQILPPIKNKFYI 390
GQQVF+ + V EGD+LN+ M+RSKENHRL+E+E CEI+E++G K ++I
Sbjct: 323 GQQVFIMSNPINVEEGDNLNLGLLMSRSKENHRLMEIELYCEIKEASGNPKESFKKTYFI 382
Query: 391 E 391
E
Sbjct: 383 E 383
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 391 | ||||||
| TAIR|locus:2010607 | 383 | PRMT10 "protein arginine methy | 0.923 | 0.942 | 0.717 | 1.2e-145 | |
| TAIR|locus:2087540 | 435 | PRMT6 "protein arginine methyl | 0.455 | 0.409 | 0.484 | 3.5e-58 | |
| ZFIN|ZDB-GENE-030131-693 | 378 | prmt1 "protein arginine methyl | 0.445 | 0.460 | 0.468 | 4.7e-50 | |
| UNIPROTKB|Q6VRB0 | 351 | prmt1-b "Protein arginine N-me | 0.445 | 0.495 | 0.468 | 1.6e-49 | |
| UNIPROTKB|Q28F07 | 351 | prmt1 "Protein arginine N-meth | 0.445 | 0.495 | 0.468 | 3.3e-49 | |
| UNIPROTKB|Q8AV13 | 369 | prmt1-a "Protein arginine N-me | 0.445 | 0.471 | 0.462 | 5.3e-49 | |
| FB|FBgn0037834 | 376 | Art1 "Arginine methyltransfera | 0.478 | 0.497 | 0.438 | 2.9e-48 | |
| UNIPROTKB|F1SKY6 | 379 | PRMT8 "Uncharacterized protein | 0.445 | 0.459 | 0.441 | 3.7e-48 | |
| ZFIN|ZDB-GENE-041105-1 | 512 | prmt3 "protein arginine methyl | 0.455 | 0.347 | 0.437 | 3.7e-48 | |
| UNIPROTKB|E2QWI7 | 376 | PRMT6 "Uncharacterized protein | 0.800 | 0.832 | 0.386 | 6e-48 |
| TAIR|locus:2010607 PRMT10 "protein arginine methyltransferase 10" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1423 (506.0 bits), Expect = 1.2e-145, P = 1.2e-145
Identities = 259/361 (71%), Positives = 306/361 (84%)
Query: 31 TATVDKEVDFANYFCTYAFLYHQKEMLSDRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSG 90
+A VDKEVD+A YFCTY+FLYHQK+MLSDRVRMDAYFN++FQNKHHF+GKTVLDVGTGSG
Sbjct: 23 SAPVDKEVDYAQYFCTYSFLYHQKDMLSDRVRMDAYFNAVFQNKHHFEGKTVLDVGTGSG 82
Query: 91 ILAIWSAQAGARKVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIIS 150
ILAIWSAQAGARKVYAVEATKM+DHAR LVKANNL +VEVIEGSVEDI LPEKVDVIIS
Sbjct: 83 ILAIWSAQAGARKVYAVEATKMADHARALVKANNLDHIVEVIEGSVEDISLPEKVDVIIS 142
Query: 151 EWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHARMWVAPIRSGLGDQKQQDYEGALDD 210
EWMGYFLLRESMFDSVI ARDRWLKPTGVMYPSHARMW+API+S + D+K+ D++GA+ D
Sbjct: 143 EWMGYFLLRESMFDSVISARDRWLKPTGVMYPSHARMWLAPIKSNIADRKRNDFDGAMAD 202
Query: 211 WYSFLKETKTYYGVDMSVLTKPFSEEQKKYYLQTSLWSNLHPDQVIGTAAVVKNIDCSTA 270
W++F E K+YYGVDM VLTKPF+EEQ+KYY+QT++W++L+P Q+IGT +VK +DC TA
Sbjct: 203 WHNFSDEIKSYYGVDMGVLTKPFAEEQEKYYIQTAMWNDLNPQQIIGTPTIVKEMDCLTA 262
Query: 271 TVDDIREVRSKFLSSIRGEGTRLCGFSGWFDVHFRGSTEDPAQQEIELTTAPSTYNGTHW 330
+V +I EVRS S I E TRLCGF GWFDV F G EDPAQQEIELTTAPS + THW
Sbjct: 263 SVSEIEEVRSNVTSVINMEHTRLCGFGGWFDVQFSGRKEDPAQQEIELTTAPSEQHCTHW 322
Query: 331 GQQVFLFRPSVRVSEGDDLNVSFSMTRSKENHRLLEVEFSCEIRESTGQILPPIKNKFYI 390
GQQVF+ + V EGD+LN+ M+RSKENHRL+E+E +CEI+E++G K ++I
Sbjct: 323 GQQVFIMSNPINVEEGDNLNLGLLMSRSKENHRLMEIELNCEIKEASGNPKESFKKTYFI 382
Query: 391 E 391
E
Sbjct: 383 E 383
|
|
| TAIR|locus:2087540 PRMT6 "protein arginine methyltransferase 6" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 433 (157.5 bits), Expect = 3.5e-58, Sum P(3) = 3.5e-58
Identities = 93/192 (48%), Positives = 129/192 (67%)
Query: 39 DF-ANYFCTYAFLYHQKEMLSDRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSA 97
DF YF +YA + +EM+ DR R + Y +I Q++ +GK V+DVG G+GIL+I+ A
Sbjct: 78 DFDVAYFHSYAHVGIHEEMIKDRARTETYREAIMQHQSLIEGKVVVDVGCGTGILSIFCA 137
Query: 98 QAGARKVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMGYFL 157
QAGA++VYAV+A+ ++ A+ +VKAN L D V V+ G VED+ + E+VDVIISEWMGY L
Sbjct: 138 QAGAKRVYAVDASDIAVQAKEVVKANGLSDKVIVLHGRVEDVEIDEEVDVIISEWMGYML 197
Query: 158 LRESMFDSVICARDRWLKPTGVMYPSHARMWVAPIRSGLGDQKQQDYEGALDDWYSFLKE 217
L ESM SVI ARDRWLKP G++ PSHA +++API D+ Y ++D W
Sbjct: 198 LYESMLGSVITARDRWLKPGGLILPSHATLYMAPISHP--DR----YSHSIDFW------ 245
Query: 218 TKTYYGVDMSVL 229
+ YG+DMS +
Sbjct: 246 -RNVYGIDMSAM 256
|
|
| ZFIN|ZDB-GENE-030131-693 prmt1 "protein arginine methyltransferase 1" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 421 (153.3 bits), Expect = 4.7e-50, Sum P(2) = 4.7e-50
Identities = 88/188 (46%), Positives = 126/188 (67%)
Query: 43 YFCTYAFLYHQKEMLSDRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGAR 102
YF +YA +EML D VR Y NS+F NKH F+ K VLDVG+G+GIL +++A+AGA+
Sbjct: 60 YFDSYAHFGIHEEMLKDEVRTLTYRNSMFHNKHLFKDKVVLDVGSGTGILCMFAAKAGAK 119
Query: 103 KVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIISEWMGYFLLRES 161
KV +E + +SD+A +VKAN L +V +I+G VE++ LP E VD+IISEWMGY L ES
Sbjct: 120 KVIGIECSSISDYAVKIVKANKLDHIVTIIKGKVEEVELPVENVDIIISEWMGYCLFYES 179
Query: 162 MFDSVICARDRWLKPTGVMYPSHARMWVAPIRSGLGDQKQQDYEGALDDWYSFLKETKTY 221
M ++VI ARD+WLKP G+++P A ++V I D++ +DY+ W+ +
Sbjct: 180 MLNTVIYARDKWLKPDGLIFPDRATLYVTAIE----DRQYKDYK---IHWW------ENV 226
Query: 222 YGVDMSVL 229
YG+DMS +
Sbjct: 227 YGLDMSCI 234
|
|
| UNIPROTKB|Q6VRB0 prmt1-b "Protein arginine N-methyltransferase 1-B" [Xenopus laevis (taxid:8355)] | Back alignment and assigned GO terms |
|---|
Score = 417 (151.9 bits), Expect = 1.6e-49, Sum P(2) = 1.6e-49
Identities = 88/188 (46%), Positives = 125/188 (66%)
Query: 43 YFCTYAFLYHQKEMLSDRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGAR 102
YF +YA +EML D VR Y NS+F N+H F+ K VLDVG+G+GIL +++A+AGA+
Sbjct: 33 YFDSYAHFGIHEEMLKDEVRTLTYRNSMFHNRHLFKDKVVLDVGSGTGILCMFAAKAGAK 92
Query: 103 KVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIISEWMGYFLLRES 161
KV +E + +SD+A +VKAN L VV +I+G VE++ LP EKVD+IISEWMGY L ES
Sbjct: 93 KVIGIECSSISDYAIKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGYCLFYES 152
Query: 162 MFDSVICARDRWLKPTGVMYPSHARMWVAPIRSGLGDQKQQDYEGALDDWYSFLKETKTY 221
M ++VI ARD+WL P G+++P A ++V I D++ +DY+ W+ +
Sbjct: 153 MLNTVIYARDKWLNPDGLIFPDRATLYVTAIE----DRQYKDYK---IHWW------ENV 199
Query: 222 YGVDMSVL 229
YG DMS +
Sbjct: 200 YGFDMSCI 207
|
|
| UNIPROTKB|Q28F07 prmt1 "Protein arginine N-methyltransferase 1" [Xenopus (Silurana) tropicalis (taxid:8364)] | Back alignment and assigned GO terms |
|---|
Score = 416 (151.5 bits), Expect = 3.3e-49, Sum P(2) = 3.3e-49
Identities = 88/188 (46%), Positives = 125/188 (66%)
Query: 43 YFCTYAFLYHQKEMLSDRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGAR 102
YF +YA +EML D VR Y NS+F N+H F+ K VLDVG+G+GIL +++A+AGA+
Sbjct: 33 YFDSYAHFGIHEEMLKDEVRTLTYRNSMFHNRHLFKDKVVLDVGSGTGILCMFAAKAGAK 92
Query: 103 KVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIISEWMGYFLLRES 161
KV +E + +SD+A +VKAN L VV +I+G VE++ LP EKVD+IISEWMGY L ES
Sbjct: 93 KVIGIECSSISDYAIKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGYCLFYES 152
Query: 162 MFDSVICARDRWLKPTGVMYPSHARMWVAPIRSGLGDQKQQDYEGALDDWYSFLKETKTY 221
M ++VI ARD+WL P G+++P A ++V I D++ +DY+ W+ +
Sbjct: 153 MLNTVIYARDKWLTPDGLIFPDRATLYVTAIE----DRQYKDYK---IHWW------ENV 199
Query: 222 YGVDMSVL 229
YG DMS +
Sbjct: 200 YGFDMSCI 207
|
|
| UNIPROTKB|Q8AV13 prmt1-a "Protein arginine N-methyltransferase 1-A" [Xenopus laevis (taxid:8355)] | Back alignment and assigned GO terms |
|---|
Score = 415 (151.1 bits), Expect = 5.3e-49, Sum P(2) = 5.3e-49
Identities = 87/188 (46%), Positives = 125/188 (66%)
Query: 43 YFCTYAFLYHQKEMLSDRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGAR 102
YF +YA +EML D VR Y NS+F N+H F+ K VLDVG+G+GIL +++A+AGA+
Sbjct: 51 YFDSYAHFGIHEEMLKDEVRTLTYRNSMFHNRHLFKDKVVLDVGSGTGILCMFAAKAGAK 110
Query: 103 KVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIISEWMGYFLLRES 161
KV +E + +SD+A +VKAN L VV +I+G VE++ LP EKVD+IISEWMGY L ES
Sbjct: 111 KVIGIECSSISDYAIKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGYCLFYES 170
Query: 162 MFDSVICARDRWLKPTGVMYPSHARMWVAPIRSGLGDQKQQDYEGALDDWYSFLKETKTY 221
M ++VI ARD+WL P G+++P A +++ I D++ +DY+ W+ +
Sbjct: 171 MLNTVIYARDKWLTPDGLIFPDRATLYITAIE----DRQYKDYK---IHWW------ENV 217
Query: 222 YGVDMSVL 229
YG DMS +
Sbjct: 218 YGFDMSCI 225
|
|
| FB|FBgn0037834 Art1 "Arginine methyltransferase 1" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 407 (148.3 bits), Expect = 2.9e-48, Sum P(2) = 2.9e-48
Identities = 89/203 (43%), Positives = 129/203 (63%)
Query: 32 ATVDKEVDFANYFCTYAFLYHQKEMLSDRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGI 91
A D+ YF +YA +EML D VR Y N+++ NKH FQGKTVLDVG G+GI
Sbjct: 45 ANADEMTSRDYYFDSYAHFGIHEEMLKDEVRTVTYRNAMYHNKHLFQGKTVLDVGCGTGI 104
Query: 92 LAIWSAQAGARKVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVEDIVLP---EKVDVI 148
L++++A+AGA +V AV+ + + + AR +V NNLQDV+ V++G +E+I LP E VD+I
Sbjct: 105 LSMFAAKAGAAQVIAVDCSNIIEFARQVVIDNNLQDVITVVKGKIEEIELPNGIEGVDII 164
Query: 149 ISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHARMWVAPIRSGLGDQKQQDYEGAL 208
ISEWMGY L ESM D+V+ ARD+WLK G+M+P +++ I D++ +D +
Sbjct: 165 ISEWMGYCLFYESMLDTVLYARDKWLKKDGMMFPDRGTLYITAIE----DRQYKDEK--- 217
Query: 209 DDWYSFLKETKTYYGVDMSVLTK 231
+W+ + YG DMS + K
Sbjct: 218 INWWDDV------YGFDMSCIRK 234
|
|
| UNIPROTKB|F1SKY6 PRMT8 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 419 (152.6 bits), Expect = 3.7e-48, Sum P(2) = 3.7e-48
Identities = 83/188 (44%), Positives = 129/188 (68%)
Query: 43 YFCTYAFLYHQKEMLSDRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGAR 102
YF +YA +EML D VR Y NS++ NKH F+ K VLDVG+G+GIL++++A+AGA+
Sbjct: 61 YFDSYAHFGIHEEMLKDEVRTLTYRNSMYHNKHVFKDKVVLDVGSGTGILSMFAAKAGAK 120
Query: 103 KVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIISEWMGYFLLRES 161
KV+ +E + +SD++ ++KAN+L +++ + +G VE++ LP EKVD+IISEWMGY L ES
Sbjct: 121 KVFGIECSSISDYSEKIIKANHLDNIITIFKGKVEEVELPVEKVDIIISEWMGYCLFYES 180
Query: 162 MFDSVICARDRWLKPTGVMYPSHARMWVAPIRSGLGDQKQQDYEGALDDWYSFLKETKTY 221
M ++VI ARD+WLKP G+M+P A ++V I D++ +D++ W+ +
Sbjct: 181 MLNTVIFARDKWLKPGGLMFPDRAALYVVAIE----DRQYKDFK---IHWW------ENV 227
Query: 222 YGVDMSVL 229
YG DM+ +
Sbjct: 228 YGFDMTCI 235
|
|
| ZFIN|ZDB-GENE-041105-1 prmt3 "protein arginine methyltransferase 3" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 372 (136.0 bits), Expect = 3.7e-48, Sum P(2) = 3.7e-48
Identities = 81/185 (43%), Positives = 124/185 (67%)
Query: 32 ATVDKEVDFANYFCTYAFLYHQKEMLSDRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGI 91
A + ++ D A YF +Y +EML D+VR ++Y + +++N F+ K VLDVG G+GI
Sbjct: 191 AELREDEDEA-YFSSYGHYSIHEEMLKDKVRTESYRDFMYRNMDVFKDKVVLDVGCGTGI 249
Query: 92 LAIWSAQAGARKVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIIS 150
L++++A+AGA+KV AV+ +++ A +V++NNL+D + +I+G +E+I LP EKVD+IIS
Sbjct: 250 LSMFAAKAGAKKVVAVDQSEIIYQAMDIVRSNNLEDTITLIKGRIEEIDLPVEKVDIIIS 309
Query: 151 EWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHARMWVAPIRSGLGD-QKQQDYEGALD 209
EWMGYFLL SM DSV+ ARDR+L G+++P + +A + GD QK D +
Sbjct: 310 EWMGYFLLFGSMLDSVLYARDRYLADDGLVFPDRCSISLAAV----GDTQKHNDRIAFWE 365
Query: 210 DWYSF 214
D Y F
Sbjct: 366 DVYGF 370
|
|
| UNIPROTKB|E2QWI7 PRMT6 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 501 (181.4 bits), Expect = 6.0e-48, P = 6.0e-48
Identities = 129/334 (38%), Positives = 188/334 (56%)
Query: 36 KEVDFANYFCTYAFLYHQKEMLSDRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIW 95
+E D Y C YA + +EM++DRVR DAY I +N +GKTVLDVG G+GIL+++
Sbjct: 42 RERDQLYYEC-YADISVHEEMIADRVRTDAYRLGILRNWAGLRGKTVLDVGAGTGILSLF 100
Query: 96 SAQAGARKVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMGY 155
QAGAR+VYAVEA+ + AR +V+ N L+D V V+ G VE + LPE+VD I+SEWMGY
Sbjct: 101 CVQAGARRVYAVEASAIWQQARDVVRLNGLEDRVHVLPGPVETVELPEQVDAIVSEWMGY 160
Query: 156 FLLRESMFDSVICARDRWLKPTGVMYPSHARMWVAPIRSGLGDQKQQDYEGALDDWYSFL 215
LL ESM SV+ AR RWLK G++ P+ A ++VAP+ DQ E L W
Sbjct: 161 GLLHESMLRSVLHARARWLKEGGLLLPASAELFVAPV----SDQM---LELRLGFW---- 209
Query: 216 KETKTYYGVDMSVLTKPFSEEQKKYYLQTSLWSNLHPDQVIGTAAVVKNIDCSTATVDDI 275
+ K YGVDMS L + F+ + + + S L + V+ ++ + + ++
Sbjct: 210 SQVKQLYGVDMSCL-ESFATRCLMGHSEIVVQS-LSGEDVLARPHCFARLELARSGLEQE 267
Query: 276 RE--VRSKFLSSIRGEGTRLCGFSGWFDVHFRGSTEDPAQQEIELTTAPSTYNGTHWGQQ 333
E V +F S G + GF+ WF V F G A++ + L+T+P + THW Q
Sbjct: 268 LEAGVGGRFRFSCYGSAP-MHGFAVWFQVTFPGGD---AEKPLVLSTSPF-HPVTHWKQA 322
Query: 334 VFLFRPSVRVSEGDDLNVSFSMTRSKENHRLLEV 367
+ V V + D++ ++ S++NHRLL V
Sbjct: 323 LLYLNEPVPVEQDTDISGEITLLPSRDNHRLLRV 356
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| Q9MAT5 | ANM10_ARATH | 2, ., 1, ., 1, ., - | 0.7174 | 0.9232 | 0.9425 | yes | no |
| A2Y953 | ANM10_ORYSI | 2, ., 1, ., 1, ., - | 0.6861 | 0.9207 | 0.9424 | N/A | no |
| Q9SNQ2 | ANM10_ORYSJ | 2, ., 1, ., 1, ., - | 0.6861 | 0.9207 | 0.9473 | yes | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| Your Input: | |||||||||||
| GSVIVG00016844001 | SubName- Full=Chromosome chr11 scaffold_13, whole genome shotgun sequence; (381 aa) | ||||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| GSVIVG00021307001 | SubName- Full=Chromosome chr8 scaffold_23, whole genome shotgun sequence; (586 aa) | • | 0.423 | ||||||||
| GSVIVG00021672001 | SubName- Full=Chromosome chr8 scaffold_23, whole genome shotgun sequence; (315 aa) | • | 0.414 | ||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 391 | |||
| cd02440 | 107 | cd02440, AdoMet_MTases, S-adenosylmethionine-depen | 2e-13 | |
| PRK00517 | 250 | PRK00517, prmA, ribosomal protein L11 methyltransf | 2e-11 | |
| pfam12847 | 104 | pfam12847, Methyltransf_18, Methyltransferase doma | 1e-09 | |
| COG4076 | 252 | COG4076, COG4076, Predicted RNA methylase [General | 8e-09 | |
| pfam06325 | 294 | pfam06325, PrmA, Ribosomal protein L11 methyltrans | 9e-09 | |
| COG2264 | 300 | COG2264, PrmA, Ribosomal protein L11 methylase [Tr | 9e-09 | |
| PRK14968 | 188 | PRK14968, PRK14968, putative methyltransferase; Pr | 1e-08 | |
| COG2227 | 243 | COG2227, UbiG, 2-polyprenyl-3-methyl-5-hydroxy-6-m | 2e-08 | |
| COG2263 | 198 | COG2263, COG2263, Predicted RNA methylase [Transla | 3e-08 | |
| pfam13659 | 117 | pfam13659, Methyltransf_26, Methyltransferase doma | 5e-08 | |
| pfam05185 | 445 | pfam05185, PRMT5, PRMT5 arginine-N-methyltransfera | 6e-08 | |
| TIGR00406 | 288 | TIGR00406, prmA, ribosomal protein L11 methyltrans | 9e-08 | |
| COG0742 | 187 | COG0742, COG0742, N6-adenine-specific methylase [D | 1e-07 | |
| COG2890 | 280 | COG2890, HemK, Methylase of polypeptide chain rele | 2e-07 | |
| pfam08241 | 92 | pfam08241, Methyltransf_11, Methyltransferase doma | 4e-07 | |
| COG4123 | 248 | COG4123, COG4123, Predicted O-methyltransferase [G | 5e-07 | |
| COG2520 | 341 | COG2520, COG2520, Predicted methyltransferase [Gen | 6e-07 | |
| pfam05175 | 170 | pfam05175, MTS, Methyltransferase small domain | 7e-07 | |
| TIGR03534 | 251 | TIGR03534, RF_mod_PrmC, protein-(glutamine-N5) met | 8e-07 | |
| pfam03602 | 183 | pfam03602, Cons_hypoth95, Conserved hypothetical p | 1e-06 | |
| pfam13847 | 151 | pfam13847, Methyltransf_31, Methyltransferase doma | 1e-06 | |
| COG2230 | 283 | COG2230, Cfa, Cyclopropane fatty acid synthase and | 2e-06 | |
| PRK09328 | 275 | PRK09328, PRK09328, N5-glutamine S-adenosyl-L-meth | 3e-06 | |
| COG2521 | 287 | COG2521, COG2521, Predicted archaeal methyltransfe | 5e-06 | |
| COG2519 | 256 | COG2519, GCD14, tRNA(1-methyladenosine) methyltran | 1e-05 | |
| PRK11873 | 272 | PRK11873, arsM, arsenite S-adenosylmethyltransfera | 1e-05 | |
| pfam02475 | 199 | pfam02475, Met_10, Met-10+ like-protein | 2e-05 | |
| TIGR01983 | 224 | TIGR01983, UbiG, ubiquinone biosynthesis O-methylt | 2e-05 | |
| PRK00107 | 187 | PRK00107, gidB, 16S rRNA methyltransferase GidB; R | 2e-05 | |
| PRK05134 | 233 | PRK05134, PRK05134, bifunctional 3-demethylubiquin | 4e-05 | |
| PRK14967 | 223 | PRK14967, PRK14967, putative methyltransferase; Pr | 4e-05 | |
| TIGR03533 | 284 | TIGR03533, L3_gln_methyl, protein-(glutamine-N5) m | 8e-05 | |
| COG3897 | 218 | COG3897, COG3897, Predicted methyltransferase [Gen | 8e-05 | |
| TIGR00138 | 181 | TIGR00138, gidB, 16S rRNA (guanine(527)-N(7))-meth | 9e-05 | |
| TIGR01444 | 144 | TIGR01444, fkbM_fam, methyltransferase, FkbM famil | 9e-05 | |
| pfam13649 | 97 | pfam13649, Methyltransf_25, Methyltransferase doma | 9e-05 | |
| TIGR00095 | 190 | TIGR00095, TIGR00095, RNA methyltransferase, RsmD | 1e-04 | |
| TIGR02072 | 240 | TIGR02072, BioC, biotin biosynthesis protein BioC | 1e-04 | |
| COG0357 | 215 | COG0357, GidB, Predicted S-adenosylmethionine-depe | 4e-04 | |
| COG2242 | 187 | COG2242, CobL, Precorrin-6B methylase 2 [Coenzyme | 4e-04 | |
| pfam02527 | 184 | pfam02527, GidB, rRNA small subunit methyltransfer | 5e-04 | |
| COG2813 | 300 | COG2813, RsmC, 16S RNA G1207 methylase RsmC [Trans | 0.001 | |
| pfam08242 | 98 | pfam08242, Methyltransf_12, Methyltransferase doma | 0.002 | |
| PRK11805 | 307 | PRK11805, PRK11805, N5-glutamine S-adenosyl-L-meth | 0.003 | |
| COG0500 | 257 | COG0500, SmtA, SAM-dependent methyltransferases [S | 0.003 |
| >gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Score = 65.5 bits (160), Expect = 2e-13
Identities = 37/104 (35%), Positives = 51/104 (49%), Gaps = 6/104 (5%)
Query: 81 TVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDI 139
VLD+G G+G LA+ A +V V+ + + AR A L D VEV++G E++
Sbjct: 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARK-AAAALLADNVEVLKGDAEEL 59
Query: 140 VL--PEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMY 181
E DVIIS L E + + AR R LKP GV+
Sbjct: 60 PPEADESFDVIIS-DPPLHHLVEDLARFLEEAR-RLLKPGGVLV 101
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). Length = 107 |
| >gnl|CDD|234786 PRK00517, prmA, ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Score = 62.9 bits (154), Expect = 2e-11
Identities = 32/80 (40%), Positives = 43/80 (53%), Gaps = 20/80 (25%)
Query: 77 FQGKTVLDVGTGSGILAIWSAQAGARKVY-------AVEATKMSDHARTLVKANNLQDVV 129
GKTVLDVG GSGILAI +A+ GA+KV AVEA + ++A N ++ V
Sbjct: 118 LPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAAR--ENAE----LNGVELNV 171
Query: 130 EVIEGSVEDIVLPEKVDVII 149
+ +G K DVI+
Sbjct: 172 YLPQGD-------LKADVIV 184
|
Length = 250 |
| >gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 54.6 bits (132), Expect = 1e-09
Identities = 30/106 (28%), Positives = 46/106 (43%), Gaps = 10/106 (9%)
Query: 78 QGKTVLDVGTGSGILAI-WSAQAGARKVYAVEA-TKMSDHARTLVKANNLQDVVEVIEGS 135
G VLD+G G+G LAI + +V V+ +M + AR K L + ++G
Sbjct: 1 PGARVLDIGCGTGSLAIELARLFPGARVTGVDLSPEMLELARENAKL-ALGPRITFVQGD 59
Query: 136 VEDIV-LPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVM 180
D + L E D + G LL + D++ LKP G +
Sbjct: 60 APDALDLLEGFDAVFIGGGGGDLL--ELLDALA----SLLKPGGRL 99
|
Protein in this family function as methyltransferases. Length = 104 |
| >gnl|CDD|226562 COG4076, COG4076, Predicted RNA methylase [General function prediction only] | Back alignment and domain information |
|---|
Score = 55.7 bits (134), Expect = 8e-09
Identities = 39/143 (27%), Positives = 64/143 (44%), Gaps = 9/143 (6%)
Query: 52 HQKEMLSDRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT- 110
+ ++L D R+ + ++I + T D+G GSGIL++ +A A A +V A+E
Sbjct: 10 YHLDLLRDVERLAVFTSAIAEVAE----DTFADLGAGSGILSVVAAHA-AERVIAIEKDP 64
Query: 111 KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMGYFLLRESMFDSVICAR 170
K + A + EV+ G D E DV+I E + L+ E VI A
Sbjct: 65 KRARLAEENLHVPGD-VNWEVVVGDARDYDF-ENADVVICEMLDTALIEEK-QVPVINAV 121
Query: 171 DRWLKPTGVMYPSHARMWVAPIR 193
+L+ + P R+ P+R
Sbjct: 122 LEFLRYDPTIIPQEVRIGANPVR 144
|
Length = 252 |
| >gnl|CDD|218990 pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA) | Back alignment and domain information |
|---|
Score = 55.7 bits (135), Expect = 9e-09
Identities = 27/82 (32%), Positives = 38/82 (46%), Gaps = 22/82 (26%)
Query: 78 QGKTVLDVGTGSGILAIWSAQAGARKVY-------AVEATKMS---DHARTLVKANNLQD 127
G+TVLDVG GSGILAI + + GA+KV AV A K + + ++ D
Sbjct: 160 PGETVLDVGCGSGILAIAALKLGAKKVVGVDIDPVAVRAAKENAELNGVEAQLEVYLPGD 219
Query: 128 VVEVIEGSVEDIVLPEKVDVII 149
+ E K DV++
Sbjct: 220 LPE------------GKADVVV 229
|
This family consists of several Ribosomal protein L11 methyltransferase (EC:2.1.1.-) sequences. Length = 294 |
| >gnl|CDD|225173 COG2264, PrmA, Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 55.8 bits (135), Expect = 9e-09
Identities = 31/78 (39%), Positives = 45/78 (57%), Gaps = 13/78 (16%)
Query: 79 GKTVLDVGTGSGILAIWSAQAGARKVY-------AVEATKMSDHARTLVKANNLQDVVEV 131
GKTVLDVG GSGILAI +A+ GA+KV AVEA + ++AR N ++ +V+
Sbjct: 163 GKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAAR--ENARL----NGVELLVQA 216
Query: 132 IEGSVEDIVLPEKVDVII 149
+ ++ DVI+
Sbjct: 217 KGFLLLEVPENGPFDVIV 234
|
Length = 300 |
| >gnl|CDD|237872 PRK14968, PRK14968, putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 54.1 bits (131), Expect = 1e-08
Identities = 33/98 (33%), Positives = 48/98 (48%), Gaps = 27/98 (27%)
Query: 79 GKTVLDVGTGSGILAIWSAQAGARKV------YAVEATKMSDHARTLVKANNLQDV-VEV 131
G VL+VGTGSGI+AI +A+ G + V YAVE K + K NN+++ VEV
Sbjct: 24 GDRVLEVGTGSGIVAIVAAKNGKKVVGVDINPYAVECAKCN------AKLNNIRNNGVEV 77
Query: 132 IEGSVEDIVLPEKVDVII--------------SEWMGY 155
I + + +K DVI+ +W+ Y
Sbjct: 78 IRSDLFEPFRGDKFDVILFNPPYLPTEEEEEWDDWLNY 115
|
Length = 188 |
| >gnl|CDD|225137 COG2227, UbiG, 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 54.3 bits (131), Expect = 2e-08
Identities = 31/134 (23%), Positives = 61/134 (45%), Gaps = 12/134 (8%)
Query: 65 AYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKAN 123
Y + + + G VLDVG G GIL+ A+ GA V ++A+ K + A+ +
Sbjct: 46 DYIREVARLRFDLPGLRVLDVGCGGGILSEPLARLGAS-VTGIDASEKPIEVAKLHALES 104
Query: 124 NLQDVVEVIEGSVEDIV-LPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYP 182
+ ++ + +VED+ + DV+ + L +S + A + +KP G+++
Sbjct: 105 GVN--IDYRQATVEDLASAGGQFDVVTCMEV---LEHVPDPESFLRACAKLVKPGGILFL 159
Query: 183 S----HARMWVAPI 192
S + ++ I
Sbjct: 160 STINRTLKAYLLAI 173
|
Length = 243 |
| >gnl|CDD|225172 COG2263, COG2263, Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 53.1 bits (128), Expect = 3e-08
Identities = 28/72 (38%), Positives = 38/72 (52%), Gaps = 5/72 (6%)
Query: 79 GKTVLDVGTGSGILAIWSAQAGARKVYAVEA-TKMSDHARTLVKANNLQDVVEVIEGSVE 137
GKTVLD+G G+GILAI +A GA +V AV+ + + AR + VE + V
Sbjct: 46 GKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEELL--GDVEFVVADVS 103
Query: 138 DIVLPEKVDVII 149
D K D +I
Sbjct: 104 DF--RGKFDTVI 113
|
Length = 198 |
| >gnl|CDD|222295 pfam13659, Methyltransf_26, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 50.5 bits (121), Expect = 5e-08
Identities = 30/112 (26%), Positives = 47/112 (41%), Gaps = 9/112 (8%)
Query: 79 GKTVLDVGTGSGILAIWSAQAGAR-KVYAVEATKMS-DHARTLVKANNLQDVVEVIEGSV 136
G VLD G GSG + +A+AG +V VE + AR + L V V+ G
Sbjct: 1 GDRVLDPGAGSGAFLLAAARAGPDARVVGVELDPEAAALARRRLALAGLAPRVRVVVGDA 60
Query: 137 EDIVL--PEKVDVII-----SEWMGYFLLRESMFDSVICARDRWLKPTGVMY 181
+++ D+++ G ++D + A R LKP GV+
Sbjct: 61 RELLELPDGSFDLVLGNPPYGPRAGDPKDNRDLYDRFLAAALRLLKPGGVLV 112
|
This family contains methyltransferase domains. Length = 117 |
| >gnl|CDD|218484 pfam05185, PRMT5, PRMT5 arginine-N-methyltransferase | Back alignment and domain information |
|---|
Score = 54.2 bits (131), Expect = 6e-08
Identities = 85/327 (25%), Positives = 127/327 (38%), Gaps = 71/327 (21%)
Query: 59 DRVRMDAYFNSIF--------QNKHHFQGKTVLDVGTGSGILAIWSAQAGAR-----KVY 105
D V+ D Y +I + K +L VG G G L + +A K+Y
Sbjct: 159 DPVKYDQYERAIRKALLDRVPEKKKTSSTLVILVVGAGRGPLVDRALKAAEETGRKVKIY 218
Query: 106 AVEATKMSDHARTLVKANNLQ---DVVEVIEGSVEDIVLPEKVDVIISEWMGYF----LL 158
AVE K + TL K N + D V +I + + PEK D+++SE +G F L
Sbjct: 219 AVE--KNPNAVVTLQKRVNFEEWGDKVTIISSDMREWKGPEKADILVSELLGSFGDNELS 276
Query: 159 RESMFDSVICARDRWLKPTGVMYPSHARMWVAPIRSGLGDQKQQDYEGALDDWYSFLKET 218
E + D R+LKP G+ P ++API S QK + S K
Sbjct: 277 PECL-DGA----QRFLKPDGISIPQSYTSYLAPISSPKLYQKVKS--------MSDPKAF 323
Query: 219 KTYYGVDMSVLTKPFSEEQKKYYLQTSLWSNLHPDQVIGTAAVVKNIDCSTATVDDIREV 278
+T Y V + K SEE + WS HP++ + R
Sbjct: 324 ETPYVVRLKSYYK-LSEEVQ------ECWSFEHPNR--------------DENSHNERYK 362
Query: 279 RSKFLSSIRGEGTRLCGFSGWFDVHFRGSTEDPAQQEIELTTAPSTY--NGTHWGQQVFL 336
+F G L GF+G+FD ++EL+ P+T+ N W F
Sbjct: 363 TLEFKIKHDGV---LHGFAGYFDAVLYK--------DVELSILPNTHTPNMISWFPIFFP 411
Query: 337 FRPSVRVSEGDDLNVSFSMTRSKENHR 363
+ V V +G +L S + R +N +
Sbjct: 412 LKKPVYVKKGQEL--SVHIWRKTDNRK 436
|
The human homologue of yeast Skb1 (Shk1 kinase-binding protein 1) is PRMT5, an arginine-N-methyltransferase. These proteins appear to be key mitotic regulators. They play a role in Jak signalling in higher eukaryotes. Length = 445 |
| >gnl|CDD|232960 TIGR00406, prmA, ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Score = 52.9 bits (127), Expect = 9e-08
Identities = 29/103 (28%), Positives = 52/103 (50%), Gaps = 2/103 (1%)
Query: 79 GKTVLDVGTGSGILAIWSAQAGARKVYAVEATKMS-DHARTLVKANNLQDVVEVIEGSVE 137
K V+DVG GSGIL+I + + GA KV ++ ++ + AR + N + D ++V +E
Sbjct: 160 DKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLE 219
Query: 138 DIVLPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVM 180
+ K DVI++ + + S + WL +G++
Sbjct: 220 QPI-EGKADVIVANILAEVIKELYPQFSRLVKPGGWLILSGIL 261
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis [Protein synthesis, Ribosomal proteins: synthesis and modification]. Length = 288 |
| >gnl|CDD|223813 COG0742, COG0742, N6-adenine-specific methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 51.1 bits (123), Expect = 1e-07
Identities = 36/150 (24%), Positives = 59/150 (39%), Gaps = 28/150 (18%)
Query: 58 SDRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEATKMSDHAR 117
+DRVR +A FN + + +G VLD+ GSG L + + GA +V VE A
Sbjct: 26 TDRVR-EALFNILAPD--EIEGARVLDLFAGSGALGLEALSRGAARVVFVE---KDRKAV 79
Query: 118 TLVKAN----NLQDVVEVIEGSVEDIV----LPEKVDVIISEWMGYFL-------LRESM 162
++K N L+ V+ + E D++ FL L +
Sbjct: 80 KILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLV-------FLDPPYAKGLLDKE 132
Query: 163 FDSVICARDRWLKPTGVMYPSHARMWVAPI 192
++ + WLKP ++ H + P
Sbjct: 133 LALLLLEENGWLKPGALIVVEHDKDVELPE 162
|
Length = 187 |
| >gnl|CDD|225443 COG2890, HemK, Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 2e-07
Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 8/76 (10%)
Query: 79 GKTVLDVGTGSGILAIWSAQAG-ARKVYAVEATKMSDHARTLVKAN---NLQDVVEVIEG 134
K +LD+GTGSG +AI A+ G +V AV+ S A L + N N V V++
Sbjct: 111 DKRILDLGTGSGAIAIALAKEGPDAEVIAVDI---SPDALALARENAERNGLVRVLVVQS 167
Query: 135 SVEDIVLPEKVDVIIS 150
+ + L K D+I+S
Sbjct: 168 DLFE-PLRGKFDLIVS 182
|
Length = 280 |
| >gnl|CDD|219759 pfam08241, Methyltransf_11, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 4e-07
Identities = 32/107 (29%), Positives = 49/107 (45%), Gaps = 24/107 (22%)
Query: 83 LDVGTGSGILAIWSAQAGARKVYAVE-ATKMSDHARTLVKANNLQDVVEVIEGSVEDIVL 141
LDVG G+G+LA A+ G +V V+ + +M AR + + G ED+
Sbjct: 1 LDVGCGTGLLAEALARRGGARVTGVDLSPEMLALARKRAP-------RKFVVGDAEDLPF 53
Query: 142 PEK-VDVIISEWMGYFL------LRESMFDSVICARDRWLKPTGVMY 181
P++ DV++S + + L LRE A R LKP G +
Sbjct: 54 PDESFDVVVSSLVLHHLPDPERALRE-------IA--RVLKPGGKLV 91
|
Members of this family are SAM dependent methyltransferases. Length = 92 |
| >gnl|CDD|226608 COG4123, COG4123, Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Score = 49.9 bits (120), Expect = 5e-07
Identities = 21/79 (26%), Positives = 41/79 (51%), Gaps = 5/79 (6%)
Query: 77 FQGKTVLDVGTGSGILAIWSAQ-AGARKVYAVEATK-MSDHARTLVKANNLQDVVEVIEG 134
+ +LD+G G+G L + AQ K+ VE + ++ A+ V N L++ ++VIE
Sbjct: 43 PKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEA 102
Query: 135 SVEDI---VLPEKVDVIIS 150
+++ ++ D+II
Sbjct: 103 DIKEFLKALVFASFDLIIC 121
|
Length = 248 |
| >gnl|CDD|225318 COG2520, COG2520, Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 6e-07
Identities = 32/127 (25%), Positives = 54/127 (42%), Gaps = 21/127 (16%)
Query: 65 AYFNSIFQNKHH------FQGKTVLDVGTGSGILAIWSAQAGARKVYAVE----ATKMSD 114
YF+ + +G+TVLD+ G G +I A+ G KVYA++ A +
Sbjct: 169 VYFSPRLSTERARVAELVKEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEY-- 226
Query: 115 HARTLVKANNLQDVVEVIEGSVED-IVLPEKVDVIISEWMGYFLLRESMFDSVICARDRW 173
+ ++ N ++ VE I G + D II MG +S + + A +
Sbjct: 227 -LKENIRLNKVEGRVEPILGDAREVAPELGVADRII---MGLP---KSAHEFLPLALEL- 278
Query: 174 LKPTGVM 180
LK G++
Sbjct: 279 LKDGGII 285
|
Length = 341 |
| >gnl|CDD|203189 pfam05175, MTS, Methyltransferase small domain | Back alignment and domain information |
|---|
Score = 48.7 bits (117), Expect = 7e-07
Identities = 25/74 (33%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
Query: 79 GKTVLDVGTGSGILAIWSAQAGAR-KVYAVEATKMS-DHARTLVKANNLQDVVEVIEGSV 136
G VLD+G G G+L A+ +V V+ + + AR + AN L + EV +
Sbjct: 32 GGKVLDLGCGYGVLGAALAKRSPDLEVTMVDINARALESARANLAANGL-ENGEVFWSDL 90
Query: 137 EDIVLPEKVDVIIS 150
V P K D+IIS
Sbjct: 91 YSAVEPGKFDLIIS 104
|
This domain is found in ribosomal RNA small subunit methyltransferase C as well as other methyltransferases . Length = 170 |
| >gnl|CDD|234248 TIGR03534, RF_mod_PrmC, protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Score = 49.4 bits (119), Expect = 8e-07
Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 11/79 (13%)
Query: 78 QGKTVLDVGTGSGILAIWSAQAGAR---KVYAVEATKMSDHARTLVKAN---NLQDVVEV 131
VLD+GTGSG +A+ A A R +V AV+ S A + + N D VE
Sbjct: 87 GPLRVLDLGTGSGAIAL--ALAKERPDARVTAVDI---SPEALAVARKNAARLGLDNVEF 141
Query: 132 IEGSVEDIVLPEKVDVIIS 150
++ + + K D+I+S
Sbjct: 142 LQSDWFEPLPGGKFDLIVS 160
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3 [Protein fate, Protein modification and repair]. Length = 251 |
| >gnl|CDD|202698 pfam03602, Cons_hypoth95, Conserved hypothetical protein 95 | Back alignment and domain information |
|---|
Score = 48.0 bits (115), Expect = 1e-06
Identities = 37/164 (22%), Positives = 61/164 (37%), Gaps = 31/164 (18%)
Query: 58 SDRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEATKMSDHAR 117
+DRVR +A FN + G VLD+ GSG L + + GA V VE A
Sbjct: 25 TDRVR-EALFNIL-APYFEIGGARVLDLFAGSGALGLEALSRGAASVVFVE---KDKKAV 79
Query: 118 TLVKAN----NLQDVVEVIEGSVEDIVL-----PEKVDVIISEWMGYFL---LRESMFDS 165
+K N L+ V+ +L D++ FL + + +
Sbjct: 80 ATLKENLEALGLEGETAVLRNDAARALLRLAGKGPPFDLV-------FLDPPYAKGLIEE 132
Query: 166 VIC--ARDRWLKPTGVMY---PSHARMWVAPIRSGLGDQKQQDY 204
+ A + WL P ++ S + P + L +++ Y
Sbjct: 133 ALELLAENGWLNPNALIVVETESDEELPEQP--ANLELHREKKY 174
|
Length = 183 |
| >gnl|CDD|222415 pfam13847, Methyltransf_31, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 1e-06
Identities = 30/120 (25%), Positives = 53/120 (44%), Gaps = 15/120 (12%)
Query: 78 QGKTVLDVGTGSGILA-IWSAQAGAR-KVYAVEATK-MSDHARTLVKANNLQDVVEVIEG 134
G VLD+G G+G L I + + G +V ++ ++ + A+ K + VE I+G
Sbjct: 3 SGIKVLDLGCGTGYLTFILAEKLGPGAEVVGIDISEEAIEKAKENAKKLGY-ENVEFIQG 61
Query: 135 SVEDI----VLPEKVDVIISEWMGYFLLRESMFDSVICARD--RWLKPTGVMYPSHARMW 188
+E++ + DV+IS + + D + R LKP GV+ S +
Sbjct: 62 DIEELPQLQLEDNSFDVVIS-----NEVLNHLPDPDKVLEEIIRVLKPGGVLIVSDPVLL 116
|
This family appears to be have methyltransferase activity. Length = 151 |
| >gnl|CDD|225139 COG2230, Cfa, Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 48.4 bits (116), Expect = 2e-06
Identities = 33/107 (30%), Positives = 46/107 (42%), Gaps = 12/107 (11%)
Query: 79 GKTVLDVGTGSGILAIWSAQAGARKVYAVEATK-MSDHARTLVKANNLQDVVEVIEGSVE 137
G T+LD+G G G LAI++A+ V V ++ +A + A L+D VEV
Sbjct: 73 GMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYR 132
Query: 138 DIVLPEKVDVIIS----EWMGYFLLRESMFDSVICARDRWLKPTGVM 180
D E D I+S E +G +D LKP G M
Sbjct: 133 D--FEEPFDRIVSVGMFEHVGK-----ENYDDFFKKVYALLKPGGRM 172
|
Length = 283 |
| >gnl|CDD|236467 PRK09328, PRK09328, N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 47.8 bits (115), Expect = 3e-06
Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 11/87 (12%)
Query: 70 IFQNKHHFQGKTVLDVGTGSGILAIWSAQAGAR---KVYAVEATKMSDHARTLVKAN--- 123
+ + VLD+GTGSG +A+ A A R +V AV+ S A + + N
Sbjct: 100 ALEALLLKEPLRVLDLGTGSGAIAL--ALAKERPDAEVTAVDI---SPEALAVARRNAKH 154
Query: 124 NLQDVVEVIEGSVEDIVLPEKVDVIIS 150
L VE ++G + + + D+I+S
Sbjct: 155 GLGARVEFLQGDWFEPLPGGRFDLIVS 181
|
Length = 275 |
| >gnl|CDD|225319 COG2521, COG2521, Predicted archaeal methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 5e-06
Identities = 25/80 (31%), Positives = 37/80 (46%), Gaps = 11/80 (13%)
Query: 78 QGKTVLDVGTGSGILAIWSAQAGARKVYAVEATKMSDHARTLVKAN----NLQDV-VEVI 132
+G+ VLD TG G AI + + GA V VE + L K N L ++ +++I
Sbjct: 134 RGERVLDTCTGLGYTAIEALERGAIHVITVEKDP---NVLELAKLNPWSRELFEIAIKII 190
Query: 133 EGSVEDIV--LP-EKVDVII 149
G ++V E D II
Sbjct: 191 LGDAYEVVKDFDDESFDAII 210
|
Length = 287 |
| >gnl|CDD|225317 COG2519, GCD14, tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 1e-05
Identities = 23/76 (30%), Positives = 32/76 (42%), Gaps = 3/76 (3%)
Query: 77 FQGKTVLDVGTGSGILAIWSAQA--GARKVYAVEA-TKMSDHARTLVKANNLQDVVEVIE 133
G VL+ GTGSG L + A+A V E + AR + L D V +
Sbjct: 93 SPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKL 152
Query: 134 GSVEDIVLPEKVDVII 149
G V + + E VD +
Sbjct: 153 GDVREGIDEEDVDAVF 168
|
Length = 256 |
| >gnl|CDD|237007 PRK11873, arsM, arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 1e-05
Identities = 26/78 (33%), Positives = 39/78 (50%), Gaps = 9/78 (11%)
Query: 79 GKTVLDVGTGSGILAIWSAQA-GAR-KVYAVEATKMSDHARTLVKANNLQ---DVVEVIE 133
G+TVLD+G+G G +A+ G KV V+ M+ +AN + VE
Sbjct: 78 GETVLDLGSGGGFDCFLAARRVGPTGKVIGVD---MTPEMLAKARANARKAGYTNVEFRL 134
Query: 134 GSVEDIVLPEK-VDVIIS 150
G +E + + + VDVIIS
Sbjct: 135 GEIEALPVADNSVDVIIS 152
|
Length = 272 |
| >gnl|CDD|202251 pfam02475, Met_10, Met-10+ like-protein | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 2e-05
Identities = 33/136 (24%), Positives = 57/136 (41%), Gaps = 29/136 (21%)
Query: 29 GGTATVDKEVDFANYFCTYAF----LYHQKEMLSDRVRMDAYFNSIFQNKHHFQGKTVLD 84
T T+ KE C + +Y ++ +R R+ +G+ V+D
Sbjct: 61 DRTETIHKE-----NGCRFKIDVSKVYFSPRLIGERERIAKLVK---------EGEVVVD 106
Query: 85 VGTGSGILAIWSAQAG-ARKVYAVEATKMSDHARTL----VKANNLQDVVEVIEGSVEDI 139
+ G G +I A+ A++VYAVE ++ A +K N ++ V+ I G V D+
Sbjct: 107 MFAGIGPFSIPIAKHSKAKRVYAVE---LNPEAVKYLKENIKLNKVEGVISPILGDVRDV 163
Query: 140 VLPEKVDVIISEWMGY 155
+L D +I M
Sbjct: 164 ILEGVADRVI---MNL 176
|
The methionine-10 mutant allele of N. crassa codes for a protein of unknown function. However, homologous proteins have been found in yeast suggesting this protein may be involved in methionine biosynthesis, transport and/or utilisation. Length = 199 |
| >gnl|CDD|233668 TIGR01983, UbiG, ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 2e-05
Identities = 29/94 (30%), Positives = 48/94 (51%), Gaps = 5/94 (5%)
Query: 60 RVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEATK-MSDHART 118
+R+D ++I +NK G VLDVG G G+L+ A+ GA V ++A++ + A+
Sbjct: 27 PLRLDYIRDTIRKNKKPLFGLRVLDVGCGGGLLSEPLARLGA-NVTGIDASEENIEVAKL 85
Query: 119 LVKANNLQDVVEVIEGSVEDIV--LPEKVDVIIS 150
K + L +E SVED+ + DV+
Sbjct: 86 HAKKDPLLK-IEYRCTSVEDLAEKGAKSFDVVTC 118
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 224 |
| >gnl|CDD|234637 PRK00107, gidB, 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Score = 44.4 bits (106), Expect = 2e-05
Identities = 28/89 (31%), Positives = 43/89 (48%), Gaps = 9/89 (10%)
Query: 67 FNSIFQNKHHFQGKTVLDVGTGSG----ILAIWSAQAGARKVYAVEAT-KMSDHARTLVK 121
+S+ + G+ VLDVG+G+G LAI A+ KV V++ K R +
Sbjct: 34 LDSLAIAPYLPGGERVLDVGSGAGFPGIPLAI--ARPEL-KVTLVDSLGKKIAFLREVAA 90
Query: 122 ANNLQDVVEVIEGSVEDIVLPEKVDVIIS 150
L++ V V+ G E+ EK DV+ S
Sbjct: 91 ELGLKN-VTVVHGRAEEFGQEEKFDVVTS 118
|
Length = 187 |
| >gnl|CDD|235350 PRK05134, PRK05134, bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Score = 44.0 bits (105), Expect = 4e-05
Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 6/83 (7%)
Query: 70 IFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEA-TKMSDHARTLVKANNLQDV 128
I ++ GK VLDVG G GIL+ A+ GA V ++A + + AR + L+
Sbjct: 40 IREHAGGLFGKRVLDVGCGGGILSESMARLGA-DVTGIDASEENIEVARLHALESGLK-- 96
Query: 129 VEVIEGSVEDIVL--PEKVDVII 149
++ + + E++ P + DV+
Sbjct: 97 IDYRQTTAEELAAEHPGQFDVVT 119
|
Length = 233 |
| >gnl|CDD|184931 PRK14967, PRK14967, putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 4e-05
Identities = 28/75 (37%), Positives = 38/75 (50%), Gaps = 5/75 (6%)
Query: 78 QGKTVLDVGTGSGILAIWSAQAGARKVYAVEATKMSDHARTLVKANNLQD--VVEVIEGS 135
G+ VLD+ TGSG LA+ +A AGA V AV+ +S A + N L V+V G
Sbjct: 36 PGRRVLDLCTGSGALAVAAAAAGAGSVTAVD---ISRRAVRSARLNALLAGVDVDVRRGD 92
Query: 136 VEDIVLPEKVDVIIS 150
V DV++S
Sbjct: 93 WARAVEFRPFDVVVS 107
|
Length = 223 |
| >gnl|CDD|234247 TIGR03533, L3_gln_methyl, protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Score = 43.7 bits (104), Expect = 8e-05
Identities = 26/89 (29%), Positives = 40/89 (44%), Gaps = 17/89 (19%)
Query: 75 HHFQG-------KTVLDVGTGSGILAIWSAQA--GARKVYAVEATKMSDHARTLVKAN-- 123
F K +LD+ TGSG +AI A A A V+A +S A + + N
Sbjct: 111 DGFAPWLEPEPVKRILDLCTGSGCIAIACAYAFPEAE----VDAVDISPDALAVAEINIE 166
Query: 124 --NLQDVVEVIEGSVEDIVLPEKVDVIIS 150
L+D V +I+ + + K D+I+S
Sbjct: 167 RHGLEDRVTLIQSDLFAALPGRKYDLIVS 195
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors [Protein synthesis, Ribosomal proteins: synthesis and modification]. Length = 284 |
| >gnl|CDD|226413 COG3897, COG3897, Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 8e-05
Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 9/74 (12%)
Query: 79 GKTVLDVGTGSGILAIWSAQAGARKVYAVEATKMSDHARTLVKA---NNLQDVVEVIEGS 135
GK VLD+G GSG++AI +A+AGA +V A +D L +A N + V ++
Sbjct: 80 GKRVLDLGAGSGLVAIAAARAGAAEVVA------ADIDPWLEQAIRLNAAANGVSILFTH 133
Query: 136 VEDIVLPEKVDVII 149
+ I P D+++
Sbjct: 134 ADLIGSPPAFDLLL 147
|
Length = 218 |
| >gnl|CDD|211555 TIGR00138, gidB, 16S rRNA (guanine(527)-N(7))-methyltransferase GidB | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 9e-05
Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 9/80 (11%)
Query: 76 HFQGKTVLDVGTGSG----ILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVE 130
+ GK V+D+G+G+G LAI + K+ +E+ K R + L + VE
Sbjct: 40 YLDGKRVIDIGSGAGFPGIPLAIARPE---LKLTLLESNHKKVAFLREVKAELGLNN-VE 95
Query: 131 VIEGSVEDIVLPEKVDVIIS 150
++ G ED E+ D+I S
Sbjct: 96 IVNGRAEDFQHEEQFDIITS 115
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA [Protein synthesis, tRNA and rRNA base modification]. Length = 181 |
| >gnl|CDD|233415 TIGR01444, fkbM_fam, methyltransferase, FkbM family | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 9e-05
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 81 TVLDVGTGSGILAIWSAQAGAR-KVYAVEAT-KMSDHARTLVKANNLQDVV 129
V+DVG G +++ A+ GA +V A E + VK NNL +VV
Sbjct: 1 VVIDVGANIGDFSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLPNVV 51
|
Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548. Length = 144 |
| >gnl|CDD|222287 pfam13649, Methyltransf_25, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 9e-05
Identities = 16/71 (22%), Positives = 32/71 (45%), Gaps = 4/71 (5%)
Query: 82 VLDVGTGSGILAIWSAQAGARKVYAVEATK-MSDHARTLVKANNLQDVVEVIEGSVEDI- 139
+LD+G G+G + A+AG V V+ +K + A+ ++ + V + D+
Sbjct: 1 ILDLGCGTGRVLRALARAGPSSVTGVDISKEALELAKERLRDKGPK--VRFVVADARDLP 58
Query: 140 VLPEKVDVIIS 150
D++I
Sbjct: 59 FEEGSFDLVIC 69
|
This family appears to be a methyltransferase domain. Length = 97 |
| >gnl|CDD|188022 TIGR00095, TIGR00095, RNA methyltransferase, RsmD family | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 1e-04
Identities = 35/149 (23%), Positives = 62/149 (41%), Gaps = 30/149 (20%)
Query: 59 DRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEATKMSDHART 118
DRVR ++ FN + G LD+ GSG L + + GA VE + A+T
Sbjct: 35 DRVR-ESLFNILRP---DIVGAHFLDLFAGSGALGLEALSRGAASAVFVEQDRKV--AQT 88
Query: 119 LVKANNLQ------DVVEVIEGSVEDIV-LPEK---VDVIISEWMGYFL---LRESMFDS 165
L + NL + V+ +V ++ L +K D+I +L + ++
Sbjct: 89 LKE--NLSTLKKSGEQATVLNDAVRALLFLAKKQTPFDII-------YLDPPFNRGLLEA 139
Query: 166 VI--CARDRWLKPTGVMYPSHARMWVAPI 192
++ ++WL P G++ + R P
Sbjct: 140 LLELLGENKWLNPKGLIVVEYDRENELPT 168
|
This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases [Protein synthesis, tRNA and rRNA base modification]. Length = 190 |
| >gnl|CDD|233708 TIGR02072, BioC, biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 1e-04
Identities = 28/118 (23%), Positives = 48/118 (40%), Gaps = 19/118 (16%)
Query: 69 SIFQNKHHFQGKTVLDVGTGSGIL-AIWSAQAGARKVYAVE-ATKMSDHARTLVKANNLQ 126
++ + K F +VLD+G G+G L + + A + + M A+T + N
Sbjct: 25 ALLKEKGIFIPASVLDIGCGTGYLTRALLKRFPQAEFIANDISAGMLAQAKTKLSEN--- 81
Query: 127 DVVEVIEGSVEDIVLPE-KVDVIIS----EWMGYFLLRESMFDSVICARDRWLKPTGV 179
V+ I G E + L + D+I+S +W + R LKP G+
Sbjct: 82 --VQFICGDAEKLPLEDSSFDLIVSNLALQWCD-------DLSQALSELARVLKPGGL 130
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology [Biosynthesis of cofactors, prosthetic groups, and carriers, Biotin]. Length = 240 |
| >gnl|CDD|223434 COG0357, GidB, Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 4e-04
Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 10/81 (12%)
Query: 76 HFQGKTVLDVGTGSG----ILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVE 130
+ K VLD+G+G+G LAI KV +E+ K R + K L++ VE
Sbjct: 65 DGKAKRVLDIGSGAGFPGIPLAIAFPDL---KVTLLESLGKKIAFLREVKKELGLEN-VE 120
Query: 131 VIEGSVEDI-VLPEKVDVIIS 150
++ G E+ ++ DV+ S
Sbjct: 121 IVHGRAEEFGQEKKQYDVVTS 141
|
Length = 215 |
| >gnl|CDD|225151 COG2242, CobL, Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 4e-04
Identities = 18/77 (23%), Positives = 34/77 (44%), Gaps = 10/77 (12%)
Query: 78 QGKTVLDVGTGSGILAI-WSAQAGARKVYAVEATKMSDHARTLVKANNLQ----DVVEVI 132
G + D+G G+G + I W+ + +V A+E + + + + N D +EV+
Sbjct: 34 PGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDE--EALELIER--NAARFGVDNLEVV 89
Query: 133 EGSVEDIVLPE-KVDVI 148
EG + + D I
Sbjct: 90 EGDAPEALPDLPSPDAI 106
|
Length = 187 |
| >gnl|CDD|217086 pfam02527, GidB, rRNA small subunit methyltransferase G | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 5e-04
Identities = 31/122 (25%), Positives = 44/122 (36%), Gaps = 36/122 (29%)
Query: 82 VLDVGTGSG----ILAIWSAQAGARKVYAVEATKMSDHART-----LVKANNLQDVVEVI 132
V DVG+G+G LAI +K+ +E S + L K NL + V ++
Sbjct: 52 VADVGSGAGFPGIPLAIAFPD---KKLTLLE----SLLKKINFLEELKKELNL-ENVTIV 103
Query: 133 EGSVEDIVLPEKVDVIIS----------EWM-------GYFLL--RESMFDSVICARDRW 173
E+ E+ DVI S EW GYFL + D +
Sbjct: 104 HARAEEYQHEEQYDVITSRAVASLNELTEWALPLLKPGGYFLAYKGKQAEDEIEELDKAC 163
Query: 174 LK 175
K
Sbjct: 164 QK 165
|
This is a family of bacterial glucose inhibited division proteins these are probably involved in the regulation of cell devision. GidB has been shown to be a methyltransferase G specific to the rRNA small subunit. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. GidB specifically methylates the N7 position of a guanosine in 16S rRNA. Length = 184 |
| >gnl|CDD|225370 COG2813, RsmC, 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 0.001
Identities = 23/74 (31%), Positives = 40/74 (54%), Gaps = 4/74 (5%)
Query: 79 GKTVLDVGTGSGILAIWSAQ-AGARKVYAVEATKMS-DHARTLVKANNLQDVVEVIEGSV 136
G VLD+G G G+L + A+ + K+ V+ + + AR + AN +++ EV ++
Sbjct: 159 GGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVEN-TEVWASNL 217
Query: 137 EDIVLPEKVDVIIS 150
+ V K D+IIS
Sbjct: 218 YEPV-EGKFDLIIS 230
|
Length = 300 |
| >gnl|CDD|219760 pfam08242, Methyltransf_12, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 37.0 bits (86), Expect = 0.002
Identities = 25/105 (23%), Positives = 42/105 (40%), Gaps = 16/105 (15%)
Query: 83 LDVGTGSGILAIWSAQAGAR-KVYAVEATK-MSDHARTLVKANNLQDVVEVIEGSVEDI- 139
LD+G G+G L +A + V+ + + A + A L D V V V D
Sbjct: 1 LDIGCGTGTLLRALLEALPGLEYTGVDISPAALEAAAERLAALGLLDAVRV-RLDVLDAI 59
Query: 140 -VLPEKVDVIIS----EWMGYFLLRESMFDSVICARDRWLKPTGV 179
+ P DV+++ + ++ ++ R LKP GV
Sbjct: 60 DLDPGSFDVVVASNVLHHLAD---PRAVLRNL----RRLLKPGGV 97
|
Members of this family are SAM dependent methyltransferases. Length = 98 |
| >gnl|CDD|236988 PRK11805, PRK11805, N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 39.0 bits (92), Expect = 0.003
Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 10/77 (12%)
Query: 80 KTVLDVGTGSGILAIWSAQA--GARKVYAVEATKMSDHA----RTLVKANNLQDVVEVIE 133
+LD+ TGSG +AI A A A V+A +S A ++ + L+D V +IE
Sbjct: 135 TRILDLCTGSGCIAIACAYAFPDAE----VDAVDISPDALAVAEINIERHGLEDRVTLIE 190
Query: 134 GSVEDIVLPEKVDVIIS 150
+ + + D+I+S
Sbjct: 191 SDLFAALPGRRYDLIVS 207
|
Length = 307 |
| >gnl|CDD|223574 COG0500, SmtA, SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Score = 38.7 bits (87), Expect = 0.003
Identities = 34/183 (18%), Positives = 59/183 (32%), Gaps = 18/183 (9%)
Query: 79 GKTVLDVGTGSGILAIWSAQAGAR-KVYAVE-ATKMSDHARTLVKANNLQDVVEV---IE 133
G VLD+G G+G LA+ + G V V+ + +M AR + L V V
Sbjct: 49 GLGVLDIGCGTGRLALLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADAL 108
Query: 134 GSVEDIVLPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHARMWVAPIR 193
G V D++IS + + L ++ R LKP G + S
Sbjct: 109 GGVLPFEDSASFDLVISLLVLHLLPPAKALRELL----RVLKPGGRLVLSD--------- 155
Query: 194 SGLGDQKQQDYEGALDDWYSFLKETKTYYGVDMSVLTKPFSEEQKKYYLQTSLWSNLHPD 253
+ L L+ ++ + + E+ L
Sbjct: 156 LLRDGLLEGRLAALLGFGDPVLERGDILLELEALLRLELLDLEELLGLLGELELERGGLA 215
Query: 254 QVI 256
+++
Sbjct: 216 RLL 218
|
Length = 257 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 391 | |||
| KOG1499 | 346 | consensus Protein arginine N-methyltransferase PRM | 100.0 | |
| KOG1500 | 517 | consensus Protein arginine N-methyltransferase CAR | 100.0 | |
| PF05185 | 448 | PRMT5: PRMT5 arginine-N-methyltransferase; InterPr | 100.0 | |
| KOG0822 | 649 | consensus Protein kinase inhibitor [Cell cycle con | 100.0 | |
| PTZ00357 | 1072 | methyltransferase; Provisional | 99.95 | |
| KOG1501 | 636 | consensus Arginine N-methyltransferase [General fu | 99.9 | |
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 99.77 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 99.72 | |
| PF01209 | 233 | Ubie_methyltran: ubiE/COQ5 methyltransferase famil | 99.71 | |
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 99.66 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 99.63 | |
| PF03848 | 192 | TehB: Tellurite resistance protein TehB; InterPro: | 99.62 | |
| PLN02396 | 322 | hexaprenyldihydroxybenzoate methyltransferase | 99.61 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 99.61 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 99.6 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 99.59 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 99.59 | |
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 99.58 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 99.57 | |
| COG4076 | 252 | Predicted RNA methylase [General function predicti | 99.56 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 99.56 | |
| PF05175 | 170 | MTS: Methyltransferase small domain; InterPro: IPR | 99.55 | |
| PLN02244 | 340 | tocopherol O-methyltransferase | 99.55 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 99.55 | |
| PF08241 | 95 | Methyltransf_11: Methyltransferase domain; InterPr | 99.55 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, | 99.55 | |
| KOG1270 | 282 | consensus Methyltransferases [Coenzyme transport a | 99.53 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 99.53 | |
| KOG1540 | 296 | consensus Ubiquinone biosynthesis methyltransferas | 99.53 | |
| PRK15068 | 322 | tRNA mo(5)U34 methyltransferase; Provisional | 99.52 | |
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 99.52 | |
| PRK12335 | 287 | tellurite resistance protein TehB; Provisional | 99.5 | |
| TIGR00452 | 314 | methyltransferase, putative. Known examples to dat | 99.5 | |
| COG4123 | 248 | Predicted O-methyltransferase [General function pr | 99.48 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 99.47 | |
| PF05401 | 201 | NodS: Nodulation protein S (NodS); InterPro: IPR00 | 99.47 | |
| PRK15451 | 247 | tRNA cmo(5)U34 methyltransferase; Provisional | 99.46 | |
| PF13659 | 117 | Methyltransf_26: Methyltransferase domain; PDB: 3G | 99.45 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 99.45 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 99.44 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 99.44 | |
| PF13649 | 101 | Methyltransf_25: Methyltransferase domain; PDB: 3B | 99.44 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 99.43 | |
| TIGR00740 | 239 | methyltransferase, putative. A simple BLAST search | 99.42 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 99.42 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 99.42 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 99.41 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 99.41 | |
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (P | 99.41 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 99.41 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 99.4 | |
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 99.4 | |
| TIGR01934 | 223 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis | 99.4 | |
| PRK05785 | 226 | hypothetical protein; Provisional | 99.4 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransfe | 99.39 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 99.39 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 99.39 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 99.38 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 99.38 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 99.38 | |
| KOG1271 | 227 | consensus Methyltransferases [General function pre | 99.37 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.36 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 99.36 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 99.36 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.34 | |
| PRK06922 | 677 | hypothetical protein; Provisional | 99.34 | |
| TIGR02021 | 219 | BchM-ChlM magnesium protoporphyrin O-methyltransfe | 99.33 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 99.33 | |
| TIGR00536 | 284 | hemK_fam HemK family putative methylases. The gene | 99.33 | |
| PRK15128 | 396 | 23S rRNA m(5)C1962 methyltransferase; Provisional | 99.32 | |
| PF08242 | 99 | Methyltransf_12: Methyltransferase domain; InterPr | 99.32 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 99.32 | |
| PF08003 | 315 | Methyltransf_9: Protein of unknown function (DUF16 | 99.31 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 99.3 | |
| TIGR01177 | 329 | conserved hypothetical protein TIGR01177. This fam | 99.3 | |
| KOG4300 | 252 | consensus Predicted methyltransferase [General fun | 99.3 | |
| PRK10909 | 199 | rsmD 16S rRNA m(2)G966-methyltransferase; Provisio | 99.3 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 99.29 | |
| PRK05134 | 233 | bifunctional 3-demethylubiquinone-9 3-methyltransf | 99.29 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 99.29 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 99.28 | |
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU. Membe | 99.28 | |
| PF13489 | 161 | Methyltransf_23: Methyltransferase domain; PDB: 3J | 99.28 | |
| COG2813 | 300 | RsmC 16S RNA G1207 methylase RsmC [Translation, ri | 99.28 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 99.28 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 99.28 | |
| TIGR01983 | 224 | UbiG ubiquinone biosynthesis O-methyltransferase. | 99.28 | |
| PRK00312 | 212 | pcm protein-L-isoaspartate O-methyltransferase; Re | 99.27 | |
| PRK04266 | 226 | fibrillarin; Provisional | 99.27 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 99.27 | |
| PRK14966 | 423 | unknown domain/N5-glutamine S-adenosyl-L-methionin | 99.26 | |
| COG2263 | 198 | Predicted RNA methylase [Translation, ribosomal st | 99.26 | |
| COG2890 | 280 | HemK Methylase of polypeptide chain release factor | 99.26 | |
| PLN02585 | 315 | magnesium protoporphyrin IX methyltransferase | 99.26 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 99.26 | |
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 99.25 | |
| TIGR00091 | 194 | tRNA (guanine-N(7)-)-methyltransferase. In E. coli | 99.25 | |
| COG4106 | 257 | Tam Trans-aconitate methyltransferase [General fun | 99.25 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.25 | |
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Meth | 99.24 | |
| TIGR00095 | 189 | RNA methyltransferase, RsmD family. This model rep | 99.23 | |
| COG2519 | 256 | GCD14 tRNA(1-methyladenosine) methyltransferase an | 99.22 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 99.21 | |
| TIGR02072 | 240 | BioC biotin biosynthesis protein BioC. This enzyme | 99.21 | |
| PRK09328 | 275 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.21 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 99.21 | |
| PHA03412 | 241 | putative methyltransferase; Provisional | 99.2 | |
| PRK14904 | 445 | 16S rRNA methyltransferase B; Provisional | 99.19 | |
| COG1092 | 393 | Predicted SAM-dependent methyltransferases [Genera | 99.19 | |
| COG2518 | 209 | Pcm Protein-L-isoaspartate carboxylmethyltransfera | 99.19 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 99.19 | |
| PF10672 | 286 | Methyltrans_SAM: S-adenosylmethionine-dependent me | 99.19 | |
| TIGR00446 | 264 | nop2p NOL1/NOP2/sun family putative RNA methylase. | 99.18 | |
| TIGR03704 | 251 | PrmC_rel_meth putative protein-(glutamine-N5) meth | 99.17 | |
| PRK10901 | 427 | 16S rRNA methyltransferase B; Provisional | 99.17 | |
| PRK14902 | 444 | 16S rRNA methyltransferase B; Provisional | 99.17 | |
| PRK14903 | 431 | 16S rRNA methyltransferase B; Provisional | 99.17 | |
| PRK07580 | 230 | Mg-protoporphyrin IX methyl transferase; Validated | 99.16 | |
| PRK14901 | 434 | 16S rRNA methyltransferase B; Provisional | 99.15 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 99.15 | |
| PRK06202 | 232 | hypothetical protein; Provisional | 99.15 | |
| PRK13943 | 322 | protein-L-isoaspartate O-methyltransferase; Provis | 99.15 | |
| PRK14121 | 390 | tRNA (guanine-N(7)-)-methyltransferase; Provisiona | 99.15 | |
| TIGR03587 | 204 | Pse_Me-ase pseudaminic acid biosynthesis-associate | 99.15 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 99.14 | |
| PRK03522 | 315 | rumB 23S rRNA methyluridine methyltransferase; Rev | 99.13 | |
| smart00650 | 169 | rADc Ribosomal RNA adenine dimethylases. | 99.13 | |
| TIGR03438 | 301 | probable methyltransferase. This model represents | 99.12 | |
| TIGR00563 | 426 | rsmB ribosomal RNA small subunit methyltransferase | 99.12 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 99.12 | |
| PF01135 | 209 | PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl | 99.12 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 99.11 | |
| PF03602 | 183 | Cons_hypoth95: Conserved hypothetical protein 95; | 99.1 | |
| PLN02476 | 278 | O-methyltransferase | 99.09 | |
| COG0742 | 187 | N6-adenine-specific methylase [DNA replication, re | 99.09 | |
| KOG2904 | 328 | consensus Predicted methyltransferase [General fun | 99.09 | |
| PF01596 | 205 | Methyltransf_3: O-methyltransferase; InterPro: IPR | 99.09 | |
| PTZ00146 | 293 | fibrillarin; Provisional | 99.09 | |
| PRK13168 | 443 | rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe | 99.08 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methy | 99.08 | |
| COG4122 | 219 | Predicted O-methyltransferase [General function pr | 99.06 | |
| PHA03411 | 279 | putative methyltransferase; Provisional | 99.04 | |
| TIGR02085 | 374 | meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer | 99.03 | |
| PLN02366 | 308 | spermidine synthase | 99.01 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 99.01 | |
| PF10294 | 173 | Methyltransf_16: Putative methyltransferase; Inter | 99.0 | |
| KOG1541 | 270 | consensus Predicted protein carboxyl methylase [Ge | 98.99 | |
| PF08704 | 247 | GCD14: tRNA methyltransferase complex GCD14 subuni | 98.99 | |
| TIGR00479 | 431 | rumA 23S rRNA (uracil-5-)-methyltransferase RumA. | 98.98 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 98.98 | |
| PLN02589 | 247 | caffeoyl-CoA O-methyltransferase | 98.96 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 98.95 | |
| PF03291 | 331 | Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 | 98.95 | |
| PF02475 | 200 | Met_10: Met-10+ like-protein; InterPro: IPR003402 | 98.94 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 98.94 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 98.92 | |
| KOG2899 | 288 | consensus Predicted methyltransferase [General fun | 98.92 | |
| PTZ00338 | 294 | dimethyladenosine transferase-like protein; Provis | 98.89 | |
| KOG3010 | 261 | consensus Methyltransferase [General function pred | 98.88 | |
| TIGR02081 | 194 | metW methionine biosynthesis protein MetW. This pr | 98.88 | |
| KOG1501 | 636 | consensus Arginine N-methyltransferase [General fu | 98.84 | |
| PRK14896 | 258 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.84 | |
| PRK04338 | 382 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 98.83 | |
| PF01170 | 179 | UPF0020: Putative RNA methylase family UPF0020; In | 98.82 | |
| COG1041 | 347 | Predicted DNA modification methylase [DNA replicat | 98.82 | |
| PRK13256 | 226 | thiopurine S-methyltransferase; Reviewed | 98.82 | |
| PF05724 | 218 | TPMT: Thiopurine S-methyltransferase (TPMT); Inter | 98.81 | |
| PF07021 | 193 | MetW: Methionine biosynthesis protein MetW; InterP | 98.81 | |
| PRK00274 | 272 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.78 | |
| KOG1975 | 389 | consensus mRNA cap methyltransferase [RNA processi | 98.78 | |
| PF02527 | 184 | GidB: rRNA small subunit methyltransferase G; Inte | 98.75 | |
| TIGR00478 | 228 | tly hemolysin TlyA family protein. Hemolysins are | 98.74 | |
| TIGR02143 | 353 | trmA_only tRNA (uracil-5-)-methyltransferase. This | 98.73 | |
| PRK11727 | 321 | 23S rRNA mA1618 methyltransferase; Provisional | 98.72 | |
| PLN02823 | 336 | spermine synthase | 98.71 | |
| PRK05031 | 362 | tRNA (uracil-5-)-methyltransferase; Validated | 98.7 | |
| COG0421 | 282 | SpeE Spermidine synthase [Amino acid transport and | 98.7 | |
| PF00891 | 241 | Methyltransf_2: O-methyltransferase; InterPro: IPR | 98.69 | |
| PF02390 | 195 | Methyltransf_4: Putative methyltransferase ; Inter | 98.69 | |
| KOG3420 | 185 | consensus Predicted RNA methylase [Translation, ri | 98.69 | |
| COG2521 | 287 | Predicted archaeal methyltransferase [General func | 98.69 | |
| PF05891 | 218 | Methyltransf_PK: AdoMet dependent proline di-methy | 98.69 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 98.67 | |
| COG2265 | 432 | TrmA SAM-dependent methyltransferases related to t | 98.67 | |
| COG2520 | 341 | Predicted methyltransferase [General function pred | 98.65 | |
| KOG2361 | 264 | consensus Predicted methyltransferase [General fun | 98.65 | |
| KOG0820 | 315 | consensus Ribosomal RNA adenine dimethylase [RNA p | 98.65 | |
| KOG3191 | 209 | consensus Predicted N6-DNA-methyltransferase [Tran | 98.63 | |
| COG3897 | 218 | Predicted methyltransferase [General function pred | 98.6 | |
| TIGR00308 | 374 | TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi | 98.6 | |
| TIGR00755 | 253 | ksgA dimethyladenosine transferase. Alternate name | 98.59 | |
| COG0357 | 215 | GidB Predicted S-adenosylmethionine-dependent meth | 98.57 | |
| PF09445 | 163 | Methyltransf_15: RNA cap guanine-N2 methyltransfer | 98.56 | |
| COG0116 | 381 | Predicted N6-adenine-specific DNA methylase [DNA r | 98.55 | |
| COG0030 | 259 | KsgA Dimethyladenosine transferase (rRNA methylati | 98.55 | |
| PRK11933 | 470 | yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; | 98.54 | |
| PF01739 | 196 | CheR: CheR methyltransferase, SAM binding domain; | 98.54 | |
| PF01564 | 246 | Spermine_synth: Spermine/spermidine synthase; Inte | 98.54 | |
| KOG1663 | 237 | consensus O-methyltransferase [Secondary metabolit | 98.53 | |
| PLN02232 | 160 | ubiquinone biosynthesis methyltransferase | 98.52 | |
| PF12147 | 311 | Methyltransf_20: Putative methyltransferase; Inter | 98.48 | |
| PF06080 | 204 | DUF938: Protein of unknown function (DUF938); Inte | 98.48 | |
| COG1189 | 245 | Predicted rRNA methylase [Translation, ribosomal s | 98.46 | |
| PF05958 | 352 | tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas | 98.45 | |
| KOG2940 | 325 | consensus Predicted methyltransferase [General fun | 98.43 | |
| PRK10611 | 287 | chemotaxis methyltransferase CheR; Provisional | 98.42 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 98.41 | |
| COG0220 | 227 | Predicted S-adenosylmethionine-dependent methyltra | 98.4 | |
| PF05219 | 265 | DREV: DREV methyltransferase; InterPro: IPR007884 | 98.39 | |
| COG3963 | 194 | Phospholipid N-methyltransferase [Lipid metabolism | 98.38 | |
| COG1352 | 268 | CheR Methylase of chemotaxis methyl-accepting prot | 98.36 | |
| PF04816 | 205 | DUF633: Family of unknown function (DUF633) ; Inte | 98.29 | |
| KOG1661 | 237 | consensus Protein-L-isoaspartate(D-aspartate) O-me | 98.27 | |
| PF05148 | 219 | Methyltransf_8: Hypothetical methyltransferase; In | 98.27 | |
| PF07942 | 270 | N2227: N2227-like protein; InterPro: IPR012901 Thi | 98.25 | |
| PF08123 | 205 | DOT1: Histone methylation protein DOT1 ; InterPro: | 98.25 | |
| PRK00536 | 262 | speE spermidine synthase; Provisional | 98.2 | |
| KOG2915 | 314 | consensus tRNA(1-methyladenosine) methyltransferas | 98.17 | |
| PRK00050 | 296 | 16S rRNA m(4)C1402 methyltranserfase; Provisional | 98.15 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 98.15 | |
| KOG2187 | 534 | consensus tRNA uracil-5-methyltransferase and rela | 98.09 | |
| PF01728 | 181 | FtsJ: FtsJ-like methyltransferase; InterPro: IPR00 | 98.08 | |
| PF00398 | 262 | RrnaAD: Ribosomal RNA adenine dimethylase; InterPr | 98.06 | |
| PRK11760 | 357 | putative 23S rRNA C2498 ribose 2'-O-ribose methylt | 98.06 | |
| KOG3045 | 325 | consensus Predicted RNA methylase involved in rRNA | 98.05 | |
| PF13679 | 141 | Methyltransf_32: Methyltransferase domain | 98.03 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 97.99 | |
| COG0144 | 355 | Sun tRNA and rRNA cytosine-C5-methylases [Translat | 97.98 | |
| KOG3178 | 342 | consensus Hydroxyindole-O-methyltransferase and re | 97.96 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 97.92 | |
| TIGR01444 | 143 | fkbM_fam methyltransferase, FkbM family. Members o | 97.9 | |
| PF13578 | 106 | Methyltransf_24: Methyltransferase domain; PDB: 3S | 97.89 | |
| PHA01634 | 156 | hypothetical protein | 97.87 | |
| PF05971 | 299 | Methyltransf_10: Protein of unknown function (DUF8 | 97.87 | |
| KOG2730 | 263 | consensus Methylase [General function prediction o | 97.85 | |
| PF02384 | 311 | N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T | 97.85 | |
| PRK10742 | 250 | putative methyltransferase; Provisional | 97.84 | |
| PF01189 | 283 | Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR | 97.84 | |
| PF09243 | 274 | Rsm22: Mitochondrial small ribosomal subunit Rsm22 | 97.82 | |
| COG0293 | 205 | FtsJ 23S rRNA methylase [Translation, ribosomal st | 97.8 | |
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 97.75 | |
| COG0500 | 257 | SmtA SAM-dependent methyltransferases [Secondary m | 97.67 | |
| PF01269 | 229 | Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr | 97.65 | |
| PF01234 | 256 | NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I | 97.6 | |
| KOG4058 | 199 | consensus Uncharacterized conserved protein [Funct | 97.5 | |
| TIGR02987 | 524 | met_A_Alw26 type II restriction m6 adenine DNA met | 97.5 | |
| TIGR03439 | 319 | methyl_EasF probable methyltransferase domain, Eas | 97.45 | |
| KOG1269 | 364 | consensus SAM-dependent methyltransferases [Lipid | 97.38 | |
| COG2384 | 226 | Predicted SAM-dependent methyltransferase [General | 97.38 | |
| PF06962 | 140 | rRNA_methylase: Putative rRNA methylase; InterPro: | 97.33 | |
| KOG3201 | 201 | consensus Uncharacterized conserved protein [Funct | 97.31 | |
| PF02005 | 377 | TRM: N2,N2-dimethylguanosine tRNA methyltransferas | 97.31 | |
| KOG1709 | 271 | consensus Guanidinoacetate methyltransferase and r | 97.31 | |
| PF01861 | 243 | DUF43: Protein of unknown function DUF43; InterPro | 97.14 | |
| KOG1122 | 460 | consensus tRNA and rRNA cytosine-C5-methylase (nuc | 97.14 | |
| PF04989 | 206 | CmcI: Cephalosporin hydroxylase; InterPro: IPR0070 | 97.12 | |
| KOG2352 | 482 | consensus Predicted spermine/spermidine synthase [ | 97.07 | |
| COG1889 | 231 | NOP1 Fibrillarin-like rRNA methylase [Translation, | 97.06 | |
| KOG1331 | 293 | consensus Predicted methyltransferase [General fun | 96.98 | |
| KOG1227 | 351 | consensus Putative methyltransferase [General func | 96.97 | |
| KOG2798 | 369 | consensus Putative trehalase [Carbohydrate transpo | 96.97 | |
| KOG4589 | 232 | consensus Cell division protein FtsJ [Cell cycle c | 96.9 | |
| KOG3987 | 288 | consensus Uncharacterized conserved protein DREV/C | 96.85 | |
| PF04672 | 267 | Methyltransf_19: S-adenosyl methyltransferase; Int | 96.83 | |
| COG5459 | 484 | Predicted rRNA methylase [Translation, ribosomal s | 96.82 | |
| PF11968 | 219 | DUF3321: Putative methyltransferase (DUF3321); Int | 96.68 | |
| PF07091 | 251 | FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: | 96.65 | |
| TIGR00006 | 305 | S-adenosyl-methyltransferase MraW. Genetics paper | 96.62 | |
| KOG2671 | 421 | consensus Putative RNA methylase [Replication, rec | 96.61 | |
| KOG1099 | 294 | consensus SAM-dependent methyltransferase/cell div | 96.34 | |
| KOG2793 | 248 | consensus Putative N2,N2-dimethylguanosine tRNA me | 96.18 | |
| KOG2920 | 282 | consensus Predicted methyltransferase [General fun | 96.13 | |
| cd00315 | 275 | Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth | 95.92 | |
| COG4798 | 238 | Predicted methyltransferase [General function pred | 95.9 | |
| PF04445 | 234 | SAM_MT: Putative SAM-dependent methyltransferase; | 95.86 | |
| COG1867 | 380 | TRM1 N2,N2-dimethylguanosine tRNA methyltransferas | 95.85 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 95.81 | |
| COG1063 | 350 | Tdh Threonine dehydrogenase and related Zn-depende | 95.8 | |
| KOG1253 | 525 | consensus tRNA methyltransferase [Translation, rib | 95.8 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 95.6 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 95.59 | |
| KOG1562 | 337 | consensus Spermidine synthase [Amino acid transpor | 95.56 | |
| KOG3115 | 249 | consensus Methyltransferase-like protein [General | 95.41 | |
| PRK09880 | 343 | L-idonate 5-dehydrogenase; Provisional | 94.59 | |
| cd08283 | 386 | FDH_like_1 Glutathione-dependent formaldehyde dehy | 94.58 | |
| PF11599 | 246 | AviRa: RRNA methyltransferase AviRa; InterPro: IPR | 94.53 | |
| COG3129 | 292 | Predicted SAM-dependent methyltransferase [General | 94.45 | |
| KOG0024 | 354 | consensus Sorbitol dehydrogenase [Secondary metabo | 94.15 | |
| COG0275 | 314 | Predicted S-adenosylmethionine-dependent methyltra | 94.08 | |
| COG0286 | 489 | HsdM Type I restriction-modification system methyl | 94.01 | |
| PF00145 | 335 | DNA_methylase: C-5 cytosine-specific DNA methylase | 93.84 | |
| KOG2078 | 495 | consensus tRNA modification enzyme [RNA processing | 93.54 | |
| COG1568 | 354 | Predicted methyltransferases [General function pre | 93.49 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 93.45 | |
| KOG1596 | 317 | consensus Fibrillarin and related nucleolar RNA-bi | 93.38 | |
| PF01795 | 310 | Methyltransf_5: MraW methylase family; InterPro: I | 93.32 | |
| PF07757 | 112 | AdoMet_MTase: Predicted AdoMet-dependent methyltra | 93.28 | |
| PF05711 | 248 | TylF: Macrocin-O-methyltransferase (TylF); InterPr | 93.2 | |
| PRK13699 | 227 | putative methylase; Provisional | 92.88 | |
| TIGR00027 | 260 | mthyl_TIGR00027 methyltransferase, putative, TIGR0 | 92.84 | |
| PF03269 | 177 | DUF268: Caenorhabditis protein of unknown function | 92.8 | |
| PF01555 | 231 | N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th | 92.57 | |
| TIGR00561 | 511 | pntA NAD(P) transhydrogenase, alpha subunit. In so | 92.52 | |
| TIGR00675 | 315 | dcm DNA-methyltransferase (dcm). All proteins in t | 92.33 | |
| TIGR03366 | 280 | HpnZ_proposed putative phosphonate catabolism asso | 92.25 | |
| cd08281 | 371 | liver_ADH_like1 Zinc-dependent alcohol dehydrogena | 92.2 | |
| TIGR03451 | 358 | mycoS_dep_FDH mycothiol-dependent formaldehyde deh | 91.8 | |
| PRK01747 | 662 | mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans | 91.76 | |
| TIGR01202 | 308 | bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl | 91.69 | |
| KOG2198 | 375 | consensus tRNA cytosine-5-methylases and related e | 91.53 | |
| COG0686 | 371 | Ald Alanine dehydrogenase [Amino acid transport an | 91.47 | |
| cd08239 | 339 | THR_DH_like L-threonine dehydrogenase (TDH)-like. | 91.32 | |
| cd08230 | 355 | glucose_DH Glucose dehydrogenase. Glucose dehydrog | 90.97 | |
| cd08237 | 341 | ribitol-5-phosphate_DH ribitol-5-phosphate dehydro | 90.93 | |
| PF02636 | 252 | Methyltransf_28: Putative S-adenosyl-L-methionine- | 90.64 | |
| PF07279 | 218 | DUF1442: Protein of unknown function (DUF1442); In | 90.49 | |
| PLN02740 | 381 | Alcohol dehydrogenase-like | 90.25 | |
| PRK10309 | 347 | galactitol-1-phosphate dehydrogenase; Provisional | 90.08 | |
| PF02737 | 180 | 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind | 90.08 | |
| PF06859 | 110 | Bin3: Bicoid-interacting protein 3 (Bin3); InterPr | 89.89 | |
| COG0270 | 328 | Dcm Site-specific DNA methylase [DNA replication, | 89.89 | |
| cd00401 | 413 | AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado | 89.74 | |
| PF06460 | 299 | NSP13: Coronavirus NSP13; InterPro: IPR009461 This | 89.33 | |
| KOG2651 | 476 | consensus rRNA adenine N-6-methyltransferase [RNA | 89.27 | |
| PRK12475 | 338 | thiamine/molybdopterin biosynthesis MoeB-like prot | 88.98 | |
| cd05188 | 271 | MDR Medium chain reductase/dehydrogenase (MDR)/zin | 88.94 | |
| cd08254 | 338 | hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo | 88.92 | |
| KOG0821 | 326 | consensus Predicted ribosomal RNA adenine dimethyl | 88.91 | |
| PRK05854 | 313 | short chain dehydrogenase; Provisional | 88.87 | |
| KOG2912 | 419 | consensus Predicted DNA methylase [Function unknow | 88.62 | |
| TIGR02356 | 202 | adenyl_thiF thiazole biosynthesis adenylyltransfer | 88.11 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 88.0 | |
| TIGR02354 | 200 | thiF_fam2 thiamine biosynthesis protein ThiF, fami | 87.93 | |
| KOG1201 | 300 | consensus Hydroxysteroid 17-beta dehydrogenase 11 | 87.82 | |
| PRK10458 | 467 | DNA cytosine methylase; Provisional | 87.78 | |
| PRK07688 | 339 | thiamine/molybdopterin biosynthesis ThiF/MoeB-like | 87.55 | |
| PLN02827 | 378 | Alcohol dehydrogenase-like | 86.69 | |
| PRK08644 | 212 | thiamine biosynthesis protein ThiF; Provisional | 86.45 | |
| COG2933 | 358 | Predicted SAM-dependent methyltransferase [General | 86.36 | |
| cd00757 | 228 | ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1 | 86.2 | |
| cd08232 | 339 | idonate-5-DH L-idonate 5-dehydrogenase. L-idonate | 86.17 | |
| cd08285 | 351 | NADP_ADH NADP(H)-dependent alcohol dehydrogenases. | 86.11 | |
| COG1062 | 366 | AdhC Zn-dependent alcohol dehydrogenases, class II | 86.09 | |
| KOG0022 | 375 | consensus Alcohol dehydrogenase, class III [Second | 86.05 | |
| KOG3924 | 419 | consensus Putative protein methyltransferase invol | 85.8 | |
| TIGR02822 | 329 | adh_fam_2 zinc-binding alcohol dehydrogenase famil | 85.74 | |
| COG1565 | 370 | Uncharacterized conserved protein [Function unknow | 85.66 | |
| TIGR00518 | 370 | alaDH alanine dehydrogenase. The family of known L | 85.63 | |
| PF05206 | 259 | TRM13: Methyltransferase TRM13; InterPro: IPR00787 | 85.4 | |
| PF04072 | 183 | LCM: Leucine carboxyl methyltransferase; InterPro: | 85.11 | |
| PRK13699 | 227 | putative methylase; Provisional | 85.06 | |
| cd08278 | 365 | benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Be | 84.99 | |
| COG3510 | 237 | CmcI Cephalosporin hydroxylase [Defense mechanisms | 84.47 | |
| cd01492 | 197 | Aos1_SUMO Ubiquitin activating enzyme (E1) subunit | 84.26 | |
| PF03492 | 334 | Methyltransf_7: SAM dependent carboxyl methyltrans | 83.99 | |
| PRK06035 | 291 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 83.97 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 83.75 | |
| PRK09260 | 288 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 83.73 | |
| COG1255 | 129 | Uncharacterized protein conserved in archaea [Func | 83.61 | |
| cd08231 | 361 | MDR_TM0436_like Hypothetical enzyme TM0436 resembl | 83.46 | |
| cd01065 | 155 | NAD_bind_Shikimate_DH NAD(P) binding domain of Shi | 83.29 | |
| TIGR03201 | 349 | dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co | 83.19 | |
| TIGR02819 | 393 | fdhA_non_GSH formaldehyde dehydrogenase, glutathio | 82.64 | |
| PRK08293 | 287 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 82.6 | |
| PF00107 | 130 | ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: | 82.08 | |
| PRK07066 | 321 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 82.02 | |
| cd01487 | 174 | E1_ThiF_like E1_ThiF_like. Member of superfamily o | 81.99 | |
| PRK07819 | 286 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 81.96 | |
| cd08233 | 351 | butanediol_DH_like (2R,3R)-2,3-butanediol dehydrog | 81.83 | |
| PRK07530 | 292 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 81.76 | |
| PRK07063 | 260 | short chain dehydrogenase; Provisional | 81.75 | |
| PRK06197 | 306 | short chain dehydrogenase; Provisional | 81.56 | |
| PRK05808 | 282 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 81.51 | |
| PF03686 | 127 | UPF0146: Uncharacterised protein family (UPF0146); | 81.46 | |
| COG4301 | 321 | Uncharacterized conserved protein [Function unknow | 81.28 | |
| PLN02586 | 360 | probable cinnamyl alcohol dehydrogenase | 80.94 | |
| PRK06139 | 330 | short chain dehydrogenase; Provisional | 80.7 | |
| cd05278 | 347 | FDH_like Formaldehyde dehydrogenases. Formaldehyde | 80.37 | |
| TIGR02818 | 368 | adh_III_F_hyde S-(hydroxymethyl)glutathione dehydr | 80.21 | |
| cd01483 | 143 | E1_enzyme_family Superfamily of activating enzymes | 80.03 |
| >KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-61 Score=441.85 Aligned_cols=312 Identities=43% Similarity=0.739 Sum_probs=290.6
Q ss_pred ccchhhhhhhhhhhhhHhhcCChHhHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEechHHHHHHH
Q 016351 38 VDFANYFCTYAFLYHQKEMLSDRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEATKMSDHAR 117 (391)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~ml~d~~r~~~~~~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s~~~~~a~ 117 (391)
...+.||++|+....|+.||+|.+|+.+|+.+|.++-..+++++|||+|||||+|++++|++|+++|+|||.|.+++.|+
T Consensus 20 ~~~~~Yf~sY~~~~iheeML~D~VRt~aYr~~i~~n~~lf~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia~~a~ 99 (346)
T KOG1499|consen 20 TSDDYYFDSYAHFGIHEEMLKDSVRTLAYRNAILQNKHLFKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIADFAR 99 (346)
T ss_pred chhhhhhhhhhchHHHHHHHhhhhhHHHHHHHHhcchhhcCCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHHHHHH
Confidence 35677999999999999999999999999999999988899999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCcEEEEEcccccCCCC-CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcccceeEEeecccCc
Q 016351 118 TLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHARMWVAPIRSGL 196 (391)
Q Consensus 118 ~~~~~~~~~~~v~~i~~d~~~~~~~-~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~~~~~~~~~~~~~ 196 (391)
+.++.|++++.|+++++.++++.+| +++|+|+|||||+++..|.++..++.+..++|+|||.++|+.++++++++++..
T Consensus 100 ~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEWMGy~Ll~EsMldsVl~ARdkwL~~~G~i~P~~a~l~l~~i~d~~ 179 (346)
T KOG1499|consen 100 KIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEWMGYFLLYESMLDSVLYARDKWLKEGGLIYPDRATLYLAAIEDDS 179 (346)
T ss_pred HHHHhcCccceEEEeecceEEEecCccceeEEeehhhhHHHHHhhhhhhhhhhhhhccCCCceEccccceEEEEeccCch
Confidence 9999999999999999999999999 999999999999999999999999999999999999999999999999998752
Q ss_pred CccchhhccccccchhhhhhcCccccccccccCCCcchhhhhhhhcccCceeecCCCCccccceeEEEEEcCCCCccccc
Q 016351 197 GDQKQQDYEGALDDWYSFLKETKTYYGVDMSVLTKPFSEEQKKYYLQTSLWSNLHPDQVIGTAAVVKNIDCSTATVDDIR 276 (391)
Q Consensus 197 ~~~~~~~~~~~~~~w~~~~~~~~~~~g~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~p~~~~~~dl~~~~~~~~~ 276 (391)
...+.+.+|+ ++|||||+++.+ .....+.++.+.+++++++|+.+.++|+.++..+++
T Consensus 180 ------~~~~~i~fW~-------~Vygfdms~~~~--------~~~~e~lv~vv~~~~l~t~~~~i~~~Dl~t~~i~d~- 237 (346)
T KOG1499|consen 180 ------YKDDKIGFWD-------DVYGFDMSCIKK--------IAIKEPLVDVVDPEQLLTEPCLIKEFDLYTVKIEDL- 237 (346)
T ss_pred ------hhhhhcCccc-------cccccchhhhhh--------hhhcccceeccChhHhcccceeeEEeeeeeeeccce-
Confidence 3355678894 999999999954 334568889999999999999999999999999999
Q ss_pred ceeeEEEEEEEecCceeEEEEEEEEeeecCCCCCCCCCcEEEecCCCCCCCCCccceEEecCCccccCCCCEEEEEEEEE
Q 016351 277 EVRSKFLSSIRGEGTRLCGFSGWFDVHFRGSTEDPAQQEIELTTAPSTYNGTHWGQQVFLFRPSVRVSEGDDLNVSFSMT 356 (391)
Q Consensus 277 ~~~~~~~~~~~~~~g~~~g~~~wf~~~l~~~~~~~~~~~i~lst~P~~~~~~hW~q~~~~l~~p~~v~~g~~l~~~~~~~ 356 (391)
.++..|++.+. +++.+|||++|||++|..... ...+.+||+|. .+.|||+|+||.|+.|+.|+.|+.|.+++.+.
T Consensus 238 ~F~s~f~l~v~-r~~~i~g~v~yFDv~F~~~~~---~~~~~fST~P~-~p~THWKQtVfyl~~p~~v~~ge~i~g~it~~ 312 (346)
T KOG1499|consen 238 SFTSPFKLKVT-RNGYLHAFVAYFDVEFTGCHG---KKRLGFSTSPS-SPYTHWKQTVFYLENPLTVKEGEDITGTITMK 312 (346)
T ss_pred eeccceEEEEc-cCceEEEEEEEEEEeeccCCC---CCcceeecCCC-CCCceeeeEEEEecCccceecCceEEEEEEEe
Confidence 69999999999 999999999999999976511 26799999994 88999999999999999999999999999999
Q ss_pred eCCCCCeeeEEEEEEEEecc
Q 016351 357 RSKENHRLLEVEFSCEIRES 376 (391)
Q Consensus 357 ~~~~~~r~~~~~~~~~~~~~ 376 (391)
++..|+|.+++.+.|++++.
T Consensus 313 ~~~~~~R~l~~~l~~~~~~~ 332 (346)
T KOG1499|consen 313 PNKKNNRDLDISLSLNFKGQ 332 (346)
T ss_pred eCCCCCccceEEEEEecCCc
Confidence 99999999999999999998
|
|
| >KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-50 Score=364.46 Aligned_cols=317 Identities=37% Similarity=0.617 Sum_probs=281.9
Q ss_pred ccccchhhhhhhhhhhhhHhhcCChHhHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEechHHHHH
Q 016351 36 KEVDFANYFCTYAFLYHQKEMLSDRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEATKMSDH 115 (391)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~ml~d~~r~~~~~~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s~~~~~ 115 (391)
+......||..|+++.+++.|+.|.+|+..|.++|.++...+.++.|||+|||+|+++++++++|+++|+|||.|.|+++
T Consensus 135 EesSA~~YF~~YG~L~~QQNMmQDYVRTgTY~~Ail~N~sDF~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS~MAqy 214 (517)
T KOG1500|consen 135 EESSASQYFQFYGYLSQQQNMMQDYVRTGTYQRAILENHSDFQDKIVLDVGAGSGILSFFAAQAGAKKVYAVEASEMAQY 214 (517)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcccccCCcEEEEecCCccHHHHHHHHhCcceEEEEehhHHHHH
Confidence 34455779999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcccceeEEeecccC
Q 016351 116 ARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHARMWVAPIRSG 195 (391)
Q Consensus 116 a~~~~~~~~~~~~v~~i~~d~~~~~~~~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~~~~~~~~~~~~ 195 (391)
|++.++.|.+.++|++|.|.++++++|+++|+||+|+|++.+.+|.+++.++.+. ++|+|.|.++|....++++|..+.
T Consensus 215 A~~Lv~~N~~~~rItVI~GKiEdieLPEk~DviISEPMG~mL~NERMLEsYl~Ar-k~l~P~GkMfPT~gdiHlAPFsDE 293 (517)
T KOG1500|consen 215 ARKLVASNNLADRITVIPGKIEDIELPEKVDVIISEPMGYMLVNERMLESYLHAR-KWLKPNGKMFPTVGDIHLAPFSDE 293 (517)
T ss_pred HHHHHhcCCccceEEEccCccccccCchhccEEEeccchhhhhhHHHHHHHHHHH-hhcCCCCcccCcccceeecccchH
Confidence 9999999999999999999999999999999999999999999999999999987 999999999999999999999764
Q ss_pred cCccchhhccccccchhhhhhcCccccccccccCCCcchhhhhhhhcccCceeecCCCCccccceeEEEEEcCCCCcccc
Q 016351 196 LGDQKQQDYEGALDDWYSFLKETKTYYGVDMSVLTKPFSEEQKKYYLQTSLWSNLHPDQVIGTAAVVKNIDCSTATVDDI 275 (391)
Q Consensus 196 ~~~~~~~~~~~~~~~w~~~~~~~~~~~g~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~p~~~~~~dl~~~~~~~~ 275 (391)
..|.+.....++|.. .+.||+|++.+..... +-|.++|.++.+++.-+...+ ....+||.+...+++
T Consensus 294 ---~Ly~E~~nkAnFWyQ-----q~fyGVdLt~L~g~a~----~eYFrQPvVDtFD~RilmA~s-v~h~~dF~~~kEedl 360 (517)
T KOG1500|consen 294 ---QLYVEQFNKANFWYQ-----QNFYGVDLTPLYGSAH----QEYFRQPVVDTFDIRILMAKS-VFHVIDFLNMKEEDL 360 (517)
T ss_pred ---HHHHHHHhhhhhhhh-----hccccccchhhhhhhh----hhhhccccccccccceeeccc-hHhhhhhhhcccchh
Confidence 334455567788964 5899999999855332 337789999998886655544 567899999999999
Q ss_pred cceeeEEEEEEEecCceeEEEEEEEEeeecCCCCCCCCCcEEEecCCCCCCCCCccceEEecCCccccCCCCEEEEEEEE
Q 016351 276 REVRSKFLSSIRGEGTRLCGFSGWFDVHFRGSTEDPAQQEIELTTAPSTYNGTHWGQQVFLFRPSVRVSEGDDLNVSFSM 355 (391)
Q Consensus 276 ~~~~~~~~~~~~~~~g~~~g~~~wf~~~l~~~~~~~~~~~i~lst~P~~~~~~hW~q~~~~l~~p~~v~~g~~l~~~~~~ 355 (391)
.++..++++.+. ..|++||+++|||+.|+++ .-.+.++|+| ..+.|||.|..+.|..|+.|++|++|++++.+
T Consensus 361 h~i~iPlkF~~~-~~g~iHGLAfWFDV~F~GS-----~~~~wlsTap-~apltHwyqvrCll~~Pi~v~aGq~ltGr~~L 433 (517)
T KOG1500|consen 361 HEIDIPLKFHAL-QCGRIHGLAFWFDVLFDGS-----TVQVWLSTAP-TAPLTHWYQVRCLLSQPIFVKAGQTLTGRLLL 433 (517)
T ss_pred eeecccceehhh-hhcceeeeeeEEEEEeccc-----eEEEccCCCC-CCCcccceeeeeeccCchhhhcCCeeeeeEEE
Confidence 778888899888 8899999999999999876 4457899999 58999999999999999999999999999999
Q ss_pred EeCCCCCeeeEEEEEEEEec
Q 016351 356 TRSKENHRLLEVEFSCEIRE 375 (391)
Q Consensus 356 ~~~~~~~r~~~~~~~~~~~~ 375 (391)
..++. .+|+|.+...++.
T Consensus 434 iA~~~--QSY~i~i~l~~~~ 451 (517)
T KOG1500|consen 434 IANSR--QSYDITITLSAKM 451 (517)
T ss_pred EEccc--cceeEEEEEEeee
Confidence 88764 4788888877654
|
|
| >PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase [] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-45 Score=357.17 Aligned_cols=275 Identities=32% Similarity=0.503 Sum_probs=210.2
Q ss_pred HhhcCChHhHHHHHHHHHhcCCCC--------CCCEEEEECCcccHHHHHHHHcC-----CCeEEEEech-HHHHHHHHH
Q 016351 54 KEMLSDRVRMDAYFNSIFQNKHHF--------QGKTVLDVGTGSGILAIWSAQAG-----ARKVYAVEAT-KMSDHARTL 119 (391)
Q Consensus 54 ~~ml~d~~r~~~~~~~i~~~~~~~--------~~~~VLDlGcGtG~l~~~~a~~g-----~~~V~avD~s-~~~~~a~~~ 119 (391)
+.+.+|..+|+.|.+||.+++... ++++|||||||+|.|+.++++++ +.+|+|||.| .+...++++
T Consensus 154 e~fE~D~vKY~~Ye~AI~~al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~ 233 (448)
T PF05185_consen 154 EVFEKDPVKYDQYERAIEEALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKR 233 (448)
T ss_dssp HHHCC-HHHHHHHHHHHHHHHHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHH
T ss_pred hhHhcCHHHHHHHHHHHHHHHHhhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHH
Confidence 345799999999999998765321 25789999999999999999886 5699999999 555556677
Q ss_pred HHHcCCCCcEEEEEcccccCCCCCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcccceeEEeecccCcCcc
Q 016351 120 VKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHARMWVAPIRSGLGDQ 199 (391)
Q Consensus 120 ~~~~~~~~~v~~i~~d~~~~~~~~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~~~~~~~~~~~~~~~~ 199 (391)
++.|+++++|+++++|++++.+|+++|+||||+||+++.+|. .+.++.++.|+|||+|++||+.++.|++|+++..+..
T Consensus 234 v~~n~w~~~V~vi~~d~r~v~lpekvDIIVSElLGsfg~nEl-~pE~Lda~~rfLkp~Gi~IP~~~t~ylaPiss~~l~~ 312 (448)
T PF05185_consen 234 VNANGWGDKVTVIHGDMREVELPEKVDIIVSELLGSFGDNEL-SPECLDAADRFLKPDGIMIPSSYTSYLAPISSPKLYQ 312 (448)
T ss_dssp HHHTTTTTTEEEEES-TTTSCHSS-EEEEEE---BTTBTTTS-HHHHHHHGGGGEEEEEEEESSEEEEEEEEEE-HHHHH
T ss_pred HHhcCCCCeEEEEeCcccCCCCCCceeEEEEeccCCcccccc-CHHHHHHHHhhcCCCCEEeCcchhhEEEEeeCHHHHH
Confidence 799999999999999999999999999999999999999984 5567999999999999999999999999998753211
Q ss_pred chhhccccccchhhhhhcCccccccccccCCCcchhhhhhhhcccCceeecCCCCccccc-eeEEEEEcCCCCc--cccc
Q 016351 200 KQQDYEGALDDWYSFLKETKTYYGVDMSVLTKPFSEEQKKYYLQTSLWSNLHPDQVIGTA-AVVKNIDCSTATV--DDIR 276 (391)
Q Consensus 200 ~~~~~~~~~~~w~~~~~~~~~~~g~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~p-~~~~~~dl~~~~~--~~~~ 276 (391)
. ...|. . ...+..+.+..+++...++.+ +.+++|++.+... +...
T Consensus 313 ~-------~~~~~-------~------------------~~~~e~pyvv~~~~~~~Ls~~~~~~~~F~hp~~~~~~~~~~ 360 (448)
T PF05185_consen 313 E-------VRNWW-------N------------------PSSFETPYVVHLSPFELLSDPPQPVFTFDHPNPDLPENSDN 360 (448)
T ss_dssp H-------HHHHH-------G------------------HHHHTSSEEE--GGGGBCSCCEEEEEETTTCGGG-GGGGGS
T ss_pred H-------HHhhc-------c------------------hhhcCCcEEEEccchhhhcCCceEEEEeccCCccccchhhh
Confidence 1 11110 0 011233555666666778888 8999998887662 2333
Q ss_pred ceeeEEEEEEEecCceeEEEEEEEEeeecCCCCCCCCCcEEEecCCCC---CCCCCccceEEecCCccccCCCCEEEEEE
Q 016351 277 EVRSKFLSSIRGEGTRLCGFSGWFDVHFRGSTEDPAQQEIELTTAPST---YNGTHWGQQVFLFRPSVRVSEGDDLNVSF 353 (391)
Q Consensus 277 ~~~~~~~~~~~~~~g~~~g~~~wf~~~l~~~~~~~~~~~i~lst~P~~---~~~~hW~q~~~~l~~p~~v~~g~~l~~~~ 353 (391)
.....++|.+. ++|++|||++||++.|++ +|.|||+|.. .+++||+|++|||++|+.|++|++|++++
T Consensus 361 ~r~~~~~F~i~-~~g~vhGfagwFd~~Ly~--------~V~LSt~P~~~~s~~~tsW~q~~fpL~~Pl~V~~g~~I~~~i 431 (448)
T PF05185_consen 361 SRSSELEFKIK-RDGVVHGFAGWFDAVLYG--------DVVLSTSPSSAHSPPMTSWFQIFFPLEEPLYVKAGDEISVHI 431 (448)
T ss_dssp EEEEEEEEEBS-SSEEEEEEEEEEEEEEEC--------SEEEESSTTS---TT--TTEEEEEEEEEEEEE-TT-EEEEEE
T ss_pred heeeeEEEeeC-CCcEEEEEEEEEEEEeeC--------CeeeecCCCcCCCCCCCeEeEEEEEecCcEEECCCCEEEEEE
Confidence 67788999988 999999999999999964 5999999952 26899999999999999999999998665
Q ss_pred EEEeCCCCCeeeEEEEEEEEec
Q 016351 354 SMTRSKENHRLLEVEFSCEIRE 375 (391)
Q Consensus 354 ~~~~~~~~~r~~~~~~~~~~~~ 375 (391)
+|+.+++| |||||.|++
T Consensus 432 --~R~~~~~~---vWYEW~v~s 448 (448)
T PF05185_consen 432 --WRKTDDRK---VWYEWSVES 448 (448)
T ss_dssp --EEECCSTC---EEEEEEEEE
T ss_pred --EEEcCCCc---EEEEEEEeC
Confidence 78888888 999999974
|
These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B .... |
| >KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=262.09 Aligned_cols=289 Identities=22% Similarity=0.323 Sum_probs=223.1
Q ss_pred hhcCChHhHHHHHHHHHhcCCCC-----C--CCEEEEECCcccHHHHHHHHc---CCC--eEEEEechHHHHHHHHHHHH
Q 016351 55 EMLSDRVRMDAYFNSIFQNKHHF-----Q--GKTVLDVGTGSGILAIWSAQA---GAR--KVYAVEATKMSDHARTLVKA 122 (391)
Q Consensus 55 ~ml~d~~r~~~~~~~i~~~~~~~-----~--~~~VLDlGcGtG~l~~~~a~~---g~~--~V~avD~s~~~~~a~~~~~~ 122 (391)
.+-.|.+.|..|.+||..++... + ..+|+-+|+|.|.+.-...++ -.+ ++++||.++.+-...++.+.
T Consensus 337 tFEkD~VKY~~Yq~Ai~~AL~Drvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~ 416 (649)
T KOG0822|consen 337 TFEKDPVKYDQYQQAILKALLDRVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNF 416 (649)
T ss_pred hhhccchHHHHHHHHHHHHHHhhCcccccCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhch
Confidence 34678999999999998775432 1 246889999999986555443 222 68999999333333344666
Q ss_pred cCCCCcEEEEEcccccCCCC-CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcccceeEEeecccCcCccch
Q 016351 123 NNLQDVVEVIEGSVEDIVLP-EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHARMWVAPIRSGLGDQKQ 201 (391)
Q Consensus 123 ~~~~~~v~~i~~d~~~~~~~-~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~~~~~~~~~~~~~~~~~~ 201 (391)
..++++|+++.+||+.+..| ++.|++|||++|.+.++|- -+..|+.+.++|||+|+.||..++.|++|+.+..+
T Consensus 417 ~~W~~~Vtii~~DMR~w~ap~eq~DI~VSELLGSFGDNEL-SPECLDG~q~fLkpdgIsIP~sYtSyi~PImS~~l---- 491 (649)
T KOG0822|consen 417 ECWDNRVTIISSDMRKWNAPREQADIIVSELLGSFGDNEL-SPECLDGAQKFLKPDGISIPSSYTSYIAPIMSPKL---- 491 (649)
T ss_pred hhhcCeeEEEeccccccCCchhhccchHHHhhccccCccC-CHHHHHHHHhhcCCCceEccchhhhhhcccccHHH----
Confidence 77889999999999999987 9999999999999999985 45679999999999999999999999999987533
Q ss_pred hhccccccchhhhhhcCccccccccccCCCcchhhhhhhhcccCceeecCCCCccccceeEEEEEcCCCCcccccceeeE
Q 016351 202 QDYEGALDDWYSFLKETKTYYGVDMSVLTKPFSEEQKKYYLQTSLWSNLHPDQVIGTAAVVKNIDCSTATVDDIREVRSK 281 (391)
Q Consensus 202 ~~~~~~~~~w~~~~~~~~~~~g~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~p~~~~~~dl~~~~~~~~~~~~~~ 281 (391)
|+...+. . +...| ..+.+..++.-..|++|+.+++|.+.+..+.--......
T Consensus 492 ---------~q~v~a~-~-----~~~~f-------------e~~YVV~l~~~~~La~~q~vftF~HPN~~~nv~N~R~~s 543 (649)
T KOG0822|consen 492 ---------YQEVKAT-N-----DPNAF-------------EAPYVVLLHNYCILAEPQPVFTFEHPNFDFNVDNSRSKS 543 (649)
T ss_pred ---------HHHHHhc-C-----Ccccc-------------ccceEEEecceeecCCCCceeEEecCCccccccccccee
Confidence 3222111 0 01122 235567777777889999999998877643322244556
Q ss_pred EEEEEEecCceeEEEEEEEEeeecCCCCCCCCCcEEEecCCCC--CCCCCccceEEecCCccccCCCCEEEEEEEEEeCC
Q 016351 282 FLSSIRGEGTRLCGFSGWFDVHFRGSTEDPAQQEIELTTAPST--YNGTHWGQQVFLFRPSVRVSEGDDLNVSFSMTRSK 359 (391)
Q Consensus 282 ~~~~~~~~~g~~~g~~~wf~~~l~~~~~~~~~~~i~lst~P~~--~~~~hW~q~~~~l~~p~~v~~g~~l~~~~~~~~~~ 359 (391)
.+|++. ++|.+|||++|||++| +++|.||+.|.+ +.+.+|++++|||++|+.|..|++|++.| +|+.
T Consensus 544 ~eF~~~-~~~~lHGFaGYFd~~L--------YkdI~LSI~P~T~TP~MfSWFPi~fPlk~Pi~v~e~~~lsv~~--wR~~ 612 (649)
T KOG0822|consen 544 VEFKVK-SNGVLHGFAGYFDAVL--------YKDIFLSIEPNTHTPGMFSWFPIFFPLKQPITVREGSTLSVHF--WRCV 612 (649)
T ss_pred EEEecC-CCceEeecchhhhhhh--------hheeeEeeccCCCCCCceeeeeeeeeccCceEeCCCCeEEEEE--EEEe
Confidence 677777 9999999999999999 568999999974 45689999999999999999999999655 8888
Q ss_pred CCCeeeEEEEEEEEe------ccc-cccCCcccceeee
Q 016351 360 ENHRLLEVEFSCEIR------EST-GQILPPIKNKFYI 390 (391)
Q Consensus 360 ~~~r~~~~~~~~~~~------~~~-~~~~~~~~~~~~~ 390 (391)
++.+ |||||.|+ .++ ...=+++|..|++
T Consensus 613 d~~k---VWYEW~v~~~~~l~~~~~s~iHN~~Grsy~~ 647 (649)
T KOG0822|consen 613 DSTK---VWYEWSVESFIYLMKPSSSEIHNPNGRSYSM 647 (649)
T ss_pred CCce---eEEEEEeeeeecccCCCcccccCCCCceeec
Confidence 8878 99999998 444 5556778888875
|
|
| >PTZ00357 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.4e-26 Score=224.27 Aligned_cols=292 Identities=19% Similarity=0.233 Sum_probs=196.7
Q ss_pred hcCChHhHHHHHHHHHhcCCCC---------------------------------CCCEEEEECCcccHHHHHHHHc---
Q 016351 56 MLSDRVRMDAYFNSIFQNKHHF---------------------------------QGKTVLDVGTGSGILAIWSAQA--- 99 (391)
Q Consensus 56 ml~d~~r~~~~~~~i~~~~~~~---------------------------------~~~~VLDlGcGtG~l~~~~a~~--- 99 (391)
+-+|...|+.|.+||..++... ...+|+-+|+|.|.|.-.+.++
T Consensus 645 FEKDpVKYdqYE~AI~kAL~Dw~~~~~~~~~~~~ns~~~~k~~~mdrvp~~~~d~~~vVImVVGAGRGPLVdraLrAak~ 724 (1072)
T PTZ00357 645 FERDARKYRQYREAVFHYVRDWYAAGAEQQHAHQNSEFFAKHGVMQRVPVPSPDERTLHLVLLGCGRGPLIDECLHAVSA 724 (1072)
T ss_pred HcCCcHHHHHHHHHHHHHHHHhhhccccccccccccccccccccccccccccCCCceEEEEEEcCCccHHHHHHHHHHHH
Confidence 4678899999999988775210 0136899999999885544443
Q ss_pred -CCC-eEEEEech-HHHHHHHHHH-HHcCC-------CCcEEEEEcccccCCCC------------CcccEEEEcccccc
Q 016351 100 -GAR-KVYAVEAT-KMSDHARTLV-KANNL-------QDVVEVIEGSVEDIVLP------------EKVDVIISEWMGYF 156 (391)
Q Consensus 100 -g~~-~V~avD~s-~~~~~a~~~~-~~~~~-------~~~v~~i~~d~~~~~~~------------~~~D~Ivse~~~~~ 156 (391)
|.+ +|+|||.| +.+.....+. ....+ .++|++|..||+++..+ +++|+||||++|.+
T Consensus 725 ~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~s~~~P~~~gKaDIVVSELLGSF 804 (1072)
T PTZ00357 725 LGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENGSLTLPADFGLCDLIVSELLGSL 804 (1072)
T ss_pred cCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccccccccccccccceehHhhhccc
Confidence 322 79999999 6544443332 33455 34699999999998543 37999999999999
Q ss_pred ccCcchHHHHHHHHhccccC----Ce-------EEEcccceeEEeecccCcCccchhhcccc----ccchhhhhhcCccc
Q 016351 157 LLRESMFDSVICARDRWLKP----TG-------VMYPSHARMWVAPIRSGLGDQKQQDYEGA----LDDWYSFLKETKTY 221 (391)
Q Consensus 157 ~~~e~~l~~~l~~~~~~L~~----gG-------~ii~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~w~~~~~~~~~~ 221 (391)
.++|-. +..|+.+.+.||+ +| +.||..++.|++|+.+..+.+........ ...| .
T Consensus 805 GDNELS-PECLDGaQrfLKdiqhsdGIl~~ph~ISIPqSYTSYIAPISSpKLya~V~~~~~~gltvP~p~---------c 874 (1072)
T PTZ00357 805 GDNELS-PECLEAFHAQLEDIQLSRGIAFNPHLMCIPQQYTAWVAPLMSATFDAAVTEAAVKGLTVPPPG---------C 874 (1072)
T ss_pred ccccCC-HHHHHHHHHhhhhhccccccccCCcceecchhhhhhccccccHHHHHHHHHhhhcccccCCcc---------c
Confidence 999854 5568888888875 55 59999999999999886543221100000 0000 0
Q ss_pred cccccccCCCcchhhhhhhhcccCceeecCCCCccccceeEEEEEcCCCCcc----------------cccceeeEEEEE
Q 016351 222 YGVDMSVLTKPFSEEQKKYYLQTSLWSNLHPDQVIGTAAVVKNIDCSTATVD----------------DIREVRSKFLSS 285 (391)
Q Consensus 222 ~g~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~p~~~~~~dl~~~~~~----------------~~~~~~~~~~~~ 285 (391)
...+.+ ....+.+..++....++.|+++++|.+.+.... .....+..+.|+
T Consensus 875 ~~~haa-------------~fet~YVV~L~s~~~La~PQPcFTFeHPn~~~s~n~y~~~~g~~~~~~~i~N~Rya~L~F~ 941 (1072)
T PTZ00357 875 HDHHAA-------------LNHTLLVTNLSRAVTLAPPQPCWTFEHRFHGGSDNDYKGDRGAMKRREPVSLERAASLLFE 941 (1072)
T ss_pred cccchh-------------hcccceEEEecceeecCCCcceeEEECCCcccccccccccccccccccccccceeEEEEEe
Confidence 000011 112345566666666788999999988654411 111345667788
Q ss_pred EEecCceeEEEEEEEEeeecCCCCCCCCCcEEEecCCCC--CCCCCccceEEecC---CccccCCCC---------EEEE
Q 016351 286 IRGEGTRLCGFSGWFDVHFRGSTEDPAQQEIELTTAPST--YNGTHWGQQVFLFR---PSVRVSEGD---------DLNV 351 (391)
Q Consensus 286 ~~~~~g~~~g~~~wf~~~l~~~~~~~~~~~i~lst~P~~--~~~~hW~q~~~~l~---~p~~v~~g~---------~l~~ 351 (391)
+. .++++|||++||++.|++.... ..+.|||.|.+ ..+-+|++.+|||+ ++..++.|+ .|.+
T Consensus 942 v~-~d~vlHGFAGYFdAvLYkDVt~---~~V~LSI~P~ThTpgMfSWFPIFFPLeP~~~~e~~~~gq~~~~~~~~~~i~~ 1017 (1072)
T PTZ00357 942 VP-PCGRCCGLAGYFSAVLYQSATA---PATIIATAPVERTEDMYSWFPCVFALEPAQQAELQDVGQAAAEESRMVAIRV 1017 (1072)
T ss_pred cC-CCcceeeeeeEEEEEeecCCCc---cceEeecCCCCCCCCccceeeeEEecCccccceEeeccccccccccceeEEE
Confidence 77 9999999999999999752100 12789999963 35679999999998 555566665 5665
Q ss_pred EEEEEeCCCCCeeeEEEEEEEEeccc
Q 016351 352 SFSMTRSKENHRLLEVEFSCEIREST 377 (391)
Q Consensus 352 ~~~~~~~~~~~r~~~~~~~~~~~~~~ 377 (391)
.+....+-+.+| |||||.|.-.|
T Consensus 1018 ~l~Rr~~~~e~r---VwYew~v~~~~ 1040 (1072)
T PTZ00357 1018 QLDRRTSLAEQR---VWYEWSVTYGD 1040 (1072)
T ss_pred eeeeccccccce---EEEEEEEeech
Confidence 554444447788 89999986554
|
|
| >KOG1501 consensus Arginine N-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.1e-23 Score=192.05 Aligned_cols=292 Identities=21% Similarity=0.211 Sum_probs=206.2
Q ss_pred hhHhhcCChHhHHHHHHHHHhcCCCCCC------CEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcC
Q 016351 52 HQKEMLSDRVRMDAYFNSIFQNKHHFQG------KTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANN 124 (391)
Q Consensus 52 ~~~~ml~d~~r~~~~~~~i~~~~~~~~~------~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~ 124 (391)
...+||+|..|+..|+..|+..+...+. ..|||||+|||+|+++++++|+..|+|+|.- +|.+.|+++..+||
T Consensus 34 sy~DMl~D~dRNiky~~gi~~tIte~kh~~~~gkv~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng 113 (636)
T KOG1501|consen 34 SYLDMLNDSDRNIKYRLGIEKTITEPKHVLDIGKVFVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNG 113 (636)
T ss_pred hHHHHhhcccccHHHHHHHHHHhcccceeccCceEEEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcCC
Confidence 3458999999999999999887654321 4689999999999999999999999999999 99999999999999
Q ss_pred CCCcEEEEEcccccCCCC--CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcccceeEEeecccCcCccchh
Q 016351 125 LQDVVEVIEGSVEDIVLP--EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHARMWVAPIRSGLGDQKQQ 202 (391)
Q Consensus 125 ~~~~v~~i~~d~~~~~~~--~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~~~~~~~~~~~~~~~~~~~ 202 (391)
+.++|++|.....++... .+.|+++.+.+..-+..|+.++.+-++..+++++|...+|..++.|++++++.++..
T Consensus 114 ~SdkI~vInkrStev~vg~~~RadI~v~e~fdtEligeGalps~qhAh~~L~~~nc~~VP~ratvY~qlVES~~l~~--- 190 (636)
T KOG1501|consen 114 MSDKINVINKRSTEVKVGGSSRADIAVREDFDTELIGEGALPSLQHAHDMLLVDNCKTVPYRATVYCQLVESTFLCN--- 190 (636)
T ss_pred CccceeeeccccceeeecCcchhhhhhHhhhhhhhhccccchhHHHHHHHhcccCCeeccccceEEEEEehhhhhhh---
Confidence 999999999999888654 468999998888888888899999999999999999999999999999999875543
Q ss_pred hccccccchhhhhh-cCcccccccc------ccCCCcchhhhhhhhcccCceeec-CCCCccccceeEEEEEcCC-CC-c
Q 016351 203 DYEGALDDWYSFLK-ETKTYYGVDM------SVLTKPFSEEQKKYYLQTSLWSNL-HPDQVIGTAAVVKNIDCST-AT-V 272 (391)
Q Consensus 203 ~~~~~~~~w~~~~~-~~~~~~g~dl------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ls~p~~~~~~dl~~-~~-~ 272 (391)
|+.+.. +.+...|+.+ +|+-.+... + ....+.. +.-++|+++...+.+||.. .. .
T Consensus 191 --------~ndl~~~~~~ts~gv~~~p~~lesc~G~~sv~-----d--~ql~~~~~~ef~~Ls~~~~~F~~df~~~~~s~ 255 (636)
T KOG1501|consen 191 --------LNDLRNNEAKTSDGVRLVPPGLESCFGIKSVQ-----D--SQLVDAIEKEFKLLSSEGTIFYSDFPRWIDSN 255 (636)
T ss_pred --------hhccccccccccCCcccCCCccccCCCchhHH-----H--HHHhhcchhhheeecCcceeEEeecchhhhcc
Confidence 322211 1122222222 111110000 0 0111111 2235799999999999973 11 1
Q ss_pred ccccceeeEEEEEEEecCceeEEEEEEEEeeecCCCCCCCCCcEEEecCCCCCCC--------CCccceEEecC--Cccc
Q 016351 273 DDIREVRSKFLSSIRGEGTRLCGFSGWFDVHFRGSTEDPAQQEIELTTAPSTYNG--------THWGQQVFLFR--PSVR 342 (391)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~g~~~g~~~wf~~~l~~~~~~~~~~~i~lst~P~~~~~--------~hW~q~~~~l~--~p~~ 342 (391)
.+. +. .+...+. .+|++..+..|||++++. ...+.+...|.+... .||.|++++++ +...
T Consensus 256 s~~-~~--~r~~va~-~Sg~~~~~l~wwdi~mD~------~g~~f~~m~p~w~~~~~~~~~~~~~weq~c~y~~~~~~~~ 325 (636)
T KOG1501|consen 256 SEI-EE--LRPPVAV-HSGPLRSNLLWWDISMDQ------FGFSFLVMQPLWTGVTIGNSVFGLLWEQACPYPKEKKGNR 325 (636)
T ss_pred hhh-hh--hcCcccc-cccchhheeeeeeeeecc------CcceEEEecceecCCChHHHHHHHHHHHhcCCChhhhcCc
Confidence 122 11 2233345 789999999999999975 345678888864332 49999998887 3333
Q ss_pred cCCCCEEEEEEEEEeCCCCCeeeEEEEEEEEeccc
Q 016351 343 VSEGDDLNVSFSMTRSKENHRLLEVEFSCEIREST 377 (391)
Q Consensus 343 v~~g~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~~ 377 (391)
+..+...-.-+.. +-+|.+++...++.+-
T Consensus 326 i~~~ss~~~v~~~------H~~l~i~~~~h~~~~~ 354 (636)
T KOG1501|consen 326 IHNVSSLMTVFSY------HLWLYIYRTDHYHCHL 354 (636)
T ss_pred eeeccceEEEeee------eeeeEEeeeeeecccc
Confidence 3333222222211 2255666666666554
|
|
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.77 E-value=5.4e-18 Score=152.01 Aligned_cols=141 Identities=23% Similarity=0.301 Sum_probs=119.2
Q ss_pred cchhhhhhhhhhhhhHhhcCChHhHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHH
Q 016351 39 DFANYFCTYAFLYHQKEMLSDRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHA 116 (391)
Q Consensus 39 ~~~~~~~~~~~~~~~~~ml~d~~r~~~~~~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~-g~~~V~avD~s-~~~~~a 116 (391)
.-..+|+..+..|+....+........|++++...+...++.+|||||||||.+++.+++. |..+|+|+|+| .|+..|
T Consensus 12 ~v~~vF~~ia~~YD~~n~~~S~g~~~~Wr~~~i~~~~~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a 91 (238)
T COG2226 12 KVQKVFDKVAKKYDLMNDLMSFGLHRLWRRALISLLGIKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVA 91 (238)
T ss_pred HHHHHHHhhHHHHHhhcccccCcchHHHHHHHHHhhCCCCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHH
Confidence 4466888888888875544455556778887777665568999999999999999999997 66689999999 999999
Q ss_pred HHHHHHcCCCCcEEEEEcccccCCCC-CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 117 RTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 117 ~~~~~~~~~~~~v~~i~~d~~~~~~~-~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
++++...+..+ |+|+++|+++++++ ++||++.+ .+.+.+-.+.+..|++++|+|||||+++..
T Consensus 92 ~~k~~~~~~~~-i~fv~~dAe~LPf~D~sFD~vt~---~fglrnv~d~~~aL~E~~RVlKpgG~~~vl 155 (238)
T COG2226 92 REKLKKKGVQN-VEFVVGDAENLPFPDNSFDAVTI---SFGLRNVTDIDKALKEMYRVLKPGGRLLVL 155 (238)
T ss_pred HHHhhccCccc-eEEEEechhhCCCCCCccCEEEe---eehhhcCCCHHHHHHHHHHhhcCCeEEEEE
Confidence 99999988888 99999999999998 89999996 566666667899999999999999977643
|
|
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=99.72 E-value=7.4e-17 Score=129.61 Aligned_cols=107 Identities=29% Similarity=0.358 Sum_probs=88.1
Q ss_pred CCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEccc-ccCCCCCcccEEEEcc-c
Q 016351 78 QGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSV-EDIVLPEKVDVIISEW-M 153 (391)
Q Consensus 78 ~~~~VLDlGcGtG~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~-~~~~~~~~~D~Ivse~-~ 153 (391)
|+.+|||||||+|.+++.+++. ...+|+|+|+| .+++.|++++...+..++|+++++|+ ......++||+|++.. .
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~~ 80 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFLEPFDLVICSGFT 80 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTSSCEEEEEECSGS
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccCCCCCEEEECCCc
Confidence 5689999999999999999993 34489999999 99999999998888888999999999 5555568899999966 2
Q ss_pred cccccCcchHHHHHHHHhccccCCeEEEccc
Q 016351 154 GYFLLRESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 154 ~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~ 184 (391)
...+........+++.+.+.|+|||++++..
T Consensus 81 ~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 81 LHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp GGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 2222222456788999999999999998753
|
... |
| >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] | Back alignment and domain information |
|---|
Probab=99.71 E-value=3e-17 Score=148.62 Aligned_cols=142 Identities=24% Similarity=0.260 Sum_probs=81.6
Q ss_pred ccchhhhhhhhhhhhhHhhcCChHhHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHc-C-CCeEEEEech-HHHH
Q 016351 38 VDFANYFCTYAFLYHQKEMLSDRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQA-G-ARKVYAVEAT-KMSD 114 (391)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~ml~d~~r~~~~~~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~-g-~~~V~avD~s-~~~~ 114 (391)
..-...|+..+..|+...-+........|++.+.+.....++.+|||+|||||.++..+++. + ..+|+++|+| .|++
T Consensus 7 ~~v~~~Fd~ia~~YD~~n~~ls~g~~~~wr~~~~~~~~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~ 86 (233)
T PF01209_consen 7 QYVRKMFDRIAPRYDRMNDLLSFGQDRRWRRKLIKLLGLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLE 86 (233)
T ss_dssp ------------------------------SHHHHHHT--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHH
T ss_pred HHHHHHHHHHHHHhCCCccccCCcHHHHHHHHHHhccCCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHH
Confidence 34566777777777763333333344566666666555667889999999999999998876 3 2489999999 9999
Q ss_pred HHHHHHHHcCCCCcEEEEEcccccCCCC-CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 115 HARTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 115 ~a~~~~~~~~~~~~v~~i~~d~~~~~~~-~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
.|+++.+..+.. +|+++++|+++++++ ++||+|+| .+.+.+-.+....++++.|+|||||.+++.
T Consensus 87 ~a~~k~~~~~~~-~i~~v~~da~~lp~~d~sfD~v~~---~fglrn~~d~~~~l~E~~RVLkPGG~l~il 152 (233)
T PF01209_consen 87 VARKKLKREGLQ-NIEFVQGDAEDLPFPDNSFDAVTC---SFGLRNFPDRERALREMYRVLKPGGRLVIL 152 (233)
T ss_dssp HHHHHHHHTT---SEEEEE-BTTB--S-TT-EEEEEE---ES-GGG-SSHHHHHHHHHHHEEEEEEEEEE
T ss_pred HHHHHHHhhCCC-CeeEEEcCHHHhcCCCCceeEEEH---HhhHHhhCCHHHHHHHHHHHcCCCeEEEEe
Confidence 999999998876 599999999999987 89999997 344444446788999999999999998754
|
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. |
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.9e-15 Score=139.82 Aligned_cols=144 Identities=20% Similarity=0.137 Sum_probs=104.2
Q ss_pred ccchhhhhhhhhhhhhHhhcCChHhHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHc-C-CCeEEEEech-HHHH
Q 016351 38 VDFANYFCTYAFLYHQKEMLSDRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQA-G-ARKVYAVEAT-KMSD 114 (391)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~ml~d~~r~~~~~~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~-g-~~~V~avD~s-~~~~ 114 (391)
.....+|+..+..|+...-+........|++.+.+.....++.+|||+|||+|.++..+++. + ..+|+|+|+| .|++
T Consensus 33 ~~v~~~f~~~A~~YD~~~~~~s~g~~~~~r~~~~~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~ 112 (261)
T PLN02233 33 NERQALFNRIAPVYDNLNDLLSLGQHRIWKRMAVSWSGAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLA 112 (261)
T ss_pred HHHHHHHHHhhhHHHHhhhhhcCChhHHHHHHHHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHH
Confidence 34566888888888862211111123445555544445556789999999999999988875 4 2489999999 9999
Q ss_pred HHHHHHHH--cCCCCcEEEEEcccccCCCC-CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEccc
Q 016351 115 HARTLVKA--NNLQDVVEVIEGSVEDIVLP-EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 115 ~a~~~~~~--~~~~~~v~~i~~d~~~~~~~-~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~ 184 (391)
.|+++... .....+++++++|+.+++++ ++||+|++... +.+-.+...+++++.|+|||||.+++..
T Consensus 113 ~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~~~~~---l~~~~d~~~~l~ei~rvLkpGG~l~i~d 182 (261)
T PLN02233 113 VAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAITMGYG---LRNVVDRLKAMQEMYRVLKPGSRVSILD 182 (261)
T ss_pred HHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEEEecc---cccCCCHHHHHHHHHHHcCcCcEEEEEE
Confidence 99876542 22234599999999999877 68999998432 3333357789999999999999987653
|
|
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.63 E-value=9.1e-16 Score=135.34 Aligned_cols=104 Identities=28% Similarity=0.402 Sum_probs=91.3
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-CcccEEEE-ccc
Q 016351 77 FQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIIS-EWM 153 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~-~~~D~Ivs-e~~ 153 (391)
.++++|||+|||-|+|+..+|+.|+ +|+|+|++ ++++.|+..+..+++. +++.+..++++... ++||+|+| |.+
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~Ga-~VtgiD~se~~I~~Ak~ha~e~gv~--i~y~~~~~edl~~~~~~FDvV~cmEVl 134 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARLGA-SVTGIDASEKPIEVAKLHALESGVN--IDYRQATVEDLASAGGQFDVVTCMEVL 134 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHHCCC-eeEEecCChHHHHHHHHhhhhcccc--ccchhhhHHHHHhcCCCccEEEEhhHH
Confidence 6789999999999999999999997 79999999 9999999999999987 88999999998665 89999999 433
Q ss_pred cccccCcchHHHHHHHHhccccCCeEEEccccee
Q 016351 154 GYFLLRESMFDSVICARDRWLKPTGVMYPSHARM 187 (391)
Q Consensus 154 ~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~~~~ 187 (391)
.+-.+...++..+.+++||||.++.+..+-
T Consensus 135 ----EHv~dp~~~~~~c~~lvkP~G~lf~STinr 164 (243)
T COG2227 135 ----EHVPDPESFLRACAKLVKPGGILFLSTINR 164 (243)
T ss_pred ----HccCCHHHHHHHHHHHcCCCcEEEEecccc
Confidence 333467789999999999999999886653
|
|
| >PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB | Back alignment and domain information |
|---|
Probab=99.62 E-value=5.1e-15 Score=128.74 Aligned_cols=110 Identities=25% Similarity=0.343 Sum_probs=89.7
Q ss_pred HHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEE
Q 016351 70 IFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVI 148 (391)
Q Consensus 70 i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~~D~I 148 (391)
+.++++..++.++||||||.|..++.+|+.|. .|+|+|.| ..++.+++.++..+++ |+....|+.+..+++.||+|
T Consensus 22 v~~a~~~~~~g~~LDlgcG~GRNalyLA~~G~-~VtAvD~s~~al~~l~~~a~~~~l~--i~~~~~Dl~~~~~~~~yD~I 98 (192)
T PF03848_consen 22 VLEAVPLLKPGKALDLGCGEGRNALYLASQGF-DVTAVDISPVALEKLQRLAEEEGLD--IRTRVADLNDFDFPEEYDFI 98 (192)
T ss_dssp HHHHCTTS-SSEEEEES-TTSHHHHHHHHTT--EEEEEESSHHHHHHHHHHHHHTT-T--EEEEE-BGCCBS-TTTEEEE
T ss_pred HHHHHhhcCCCcEEEcCCCCcHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHhhcCce--eEEEEecchhccccCCcCEE
Confidence 33445556788999999999999999999999 69999999 8899999999999987 99999999998888999999
Q ss_pred EEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 149 ISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 149 vse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
+|..+..++..+ ..+.+++.+...++|||+++..
T Consensus 99 ~st~v~~fL~~~-~~~~i~~~m~~~~~pGG~~li~ 132 (192)
T PF03848_consen 99 VSTVVFMFLQRE-LRPQIIENMKAATKPGGYNLIV 132 (192)
T ss_dssp EEESSGGGS-GG-GHHHHHHHHHHTEEEEEEEEEE
T ss_pred EEEEEeccCCHH-HHHHHHHHHHhhcCCcEEEEEE
Confidence 997666666655 5788999999999999997753
|
When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A. |
| >PLN02396 hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.5e-14 Score=136.69 Aligned_cols=105 Identities=23% Similarity=0.276 Sum_probs=87.1
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-CcccEEEEcccc
Q 016351 77 FQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIISEWMG 154 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~-~~~D~Ivse~~~ 154 (391)
.++.+|||||||+|.++..+++.|+ +|+|||.+ .+++.|++++...+...+|+++++|++++..+ ++||+|+|..+
T Consensus 130 ~~g~~ILDIGCG~G~~s~~La~~g~-~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~v- 207 (322)
T PLN02396 130 FEGLKFIDIGCGGGLLSEPLARMGA-TVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEV- 207 (322)
T ss_pred CCCCEEEEeeCCCCHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhH-
Confidence 3567999999999999999998877 79999999 99999998887766655699999999988655 78999998332
Q ss_pred ccccCcchHHHHHHHHhccccCCeEEEcccc
Q 016351 155 YFLLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 155 ~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~~ 185 (391)
+.+-.+...++.++.++|||||.+++...
T Consensus 208 --LeHv~d~~~~L~~l~r~LkPGG~liist~ 236 (322)
T PLN02396 208 --IEHVANPAEFCKSLSALTIPNGATVLSTI 236 (322)
T ss_pred --HHhcCCHHHHHHHHHHHcCCCcEEEEEEC
Confidence 22233567899999999999999997643
|
|
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.5e-14 Score=131.74 Aligned_cols=140 Identities=20% Similarity=0.234 Sum_probs=106.6
Q ss_pred chhhhhhhhhhhhhHhhcCChHhHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHc-C-CCeEEEEech-HHHHHH
Q 016351 40 FANYFCTYAFLYHQKEMLSDRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQA-G-ARKVYAVEAT-KMSDHA 116 (391)
Q Consensus 40 ~~~~~~~~~~~~~~~~ml~d~~r~~~~~~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~-g-~~~V~avD~s-~~~~~a 116 (391)
...+|+..+..|+...-.....+...+++.+...+...++.+|||+|||+|.++..+++. + ..+|+|+|++ .+++.|
T Consensus 7 ~~~~f~~~a~~yd~~~~~~~~~~~~~~~~~~l~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a 86 (231)
T TIGR02752 7 VHKVFEKIYKKYDRMNSVISFQRHKKWRKDTMKRMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVG 86 (231)
T ss_pred HHHHHHHhhhHHhHHHHHhcCCchHHHHHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHH
Confidence 355777777777663222223345566666766666667889999999999999998876 3 3489999999 999999
Q ss_pred HHHHHHcCCCCcEEEEEcccccCCCC-CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 117 RTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 117 ~~~~~~~~~~~~v~~i~~d~~~~~~~-~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
+++.+..++. +++++++|+.+++++ ++||+|++... +.+......++.++.++|+|||.++..
T Consensus 87 ~~~~~~~~~~-~v~~~~~d~~~~~~~~~~fD~V~~~~~---l~~~~~~~~~l~~~~~~Lk~gG~l~~~ 150 (231)
T TIGR02752 87 RQKVKDAGLH-NVELVHGNAMELPFDDNSFDYVTIGFG---LRNVPDYMQVLREMYRVVKPGGKVVCL 150 (231)
T ss_pred HHHHHhcCCC-ceEEEEechhcCCCCCCCccEEEEecc---cccCCCHHHHHHHHHHHcCcCeEEEEE
Confidence 9999888774 599999999887765 78999997432 223335677899999999999998753
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=7.8e-15 Score=130.10 Aligned_cols=106 Identities=21% Similarity=0.277 Sum_probs=88.9
Q ss_pred CCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEcc
Q 016351 74 KHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEW 152 (391)
Q Consensus 74 ~~~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~~D~Ivse~ 152 (391)
+...++.+|||+|||+|.++..+++.|. +|+|+|+| .|++.++++++.+++.+ ++++..|+.++.++++||+|+|..
T Consensus 26 l~~~~~~~vLDiGcG~G~~a~~La~~g~-~V~gvD~S~~~i~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~~fD~I~~~~ 103 (197)
T PRK11207 26 VKVVKPGKTLDLGCGNGRNSLYLAANGF-DVTAWDKNPMSIANLERIKAAENLDN-LHTAVVDLNNLTFDGEYDFILSTV 103 (197)
T ss_pred cccCCCCcEEEECCCCCHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHcCCCc-ceEEecChhhCCcCCCcCEEEEec
Confidence 3345668999999999999999999987 89999999 99999999999988865 899999998877777899999965
Q ss_pred ccccccCcchHHHHHHHHhccccCCeEEEc
Q 016351 153 MGYFLLRESMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 153 ~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~ 182 (391)
+.+++. ...+..++..+.++|+|||.++.
T Consensus 104 ~~~~~~-~~~~~~~l~~i~~~LkpgG~~~~ 132 (197)
T PRK11207 104 VLMFLE-AKTIPGLIANMQRCTKPGGYNLI 132 (197)
T ss_pred chhhCC-HHHHHHHHHHHHHHcCCCcEEEE
Confidence 544433 33578899999999999998653
|
|
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.4e-14 Score=126.32 Aligned_cols=100 Identities=28% Similarity=0.386 Sum_probs=84.3
Q ss_pred CCCCEEEEECCcccHHHHHHHHcC-CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEcccc
Q 016351 77 FQGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMG 154 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~l~~~~a~~g-~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~~D~Ivse~~~ 154 (391)
.++.+|||+|||+|.+++.++..+ ..+|+|+|.+ .|++.++++++.+++.+ ++++++|+.++...++||+|+|+.+
T Consensus 41 ~~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~-i~~i~~d~~~~~~~~~fD~I~s~~~- 118 (181)
T TIGR00138 41 LDGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNN-VEIVNGRAEDFQHEEQFDVITSRAL- 118 (181)
T ss_pred cCCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCC-eEEEecchhhccccCCccEEEehhh-
Confidence 457899999999999999988764 4589999999 89999999999998865 9999999998755589999999652
Q ss_pred ccccCcchHHHHHHHHhccccCCeEEEccc
Q 016351 155 YFLLRESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 155 ~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~ 184 (391)
..++.+++.+.++|+|||.+++..
T Consensus 119 ------~~~~~~~~~~~~~LkpgG~lvi~~ 142 (181)
T TIGR00138 119 ------ASLNVLLELTLNLLKVGGYFLAYK 142 (181)
T ss_pred ------hCHHHHHHHHHHhcCCCCEEEEEc
Confidence 135567888899999999998653
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.2e-14 Score=128.67 Aligned_cols=107 Identities=20% Similarity=0.218 Sum_probs=87.1
Q ss_pred hcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEE
Q 016351 72 QNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIIS 150 (391)
Q Consensus 72 ~~~~~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~~D~Ivs 150 (391)
+.+...++.+|||+|||+|.++..+++.|. +|+|+|+| .|++.++++++.+++. +++...|+....++++||+|++
T Consensus 24 ~~~~~~~~~~vLDiGcG~G~~a~~la~~g~-~V~~iD~s~~~l~~a~~~~~~~~~~--v~~~~~d~~~~~~~~~fD~I~~ 100 (195)
T TIGR00477 24 EAVKTVAPCKTLDLGCGQGRNSLYLSLAGY-DVRAWDHNPASIASVLDMKARENLP--LRTDAYDINAAALNEDYDFIFS 100 (195)
T ss_pred HHhccCCCCcEEEeCCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHHhCCC--ceeEeccchhccccCCCCEEEE
Confidence 334445568999999999999999999987 79999999 8999999999888875 7888888876666678999999
Q ss_pred ccccccccCcchHHHHHHHHhccccCCeEEEc
Q 016351 151 EWMGYFLLRESMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 151 e~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~ 182 (391)
..+.+.+.. .....+++.+.++|+|||++++
T Consensus 101 ~~~~~~~~~-~~~~~~l~~~~~~LkpgG~lli 131 (195)
T TIGR00477 101 TVVFMFLQA-GRVPEIIANMQAHTRPGGYNLI 131 (195)
T ss_pred ecccccCCH-HHHHHHHHHHHHHhCCCcEEEE
Confidence 665444332 3567889999999999998553
|
Part of a tellurite-reducing operon tehA and tehB |
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
Probab=99.58 E-value=2e-14 Score=122.19 Aligned_cols=105 Identities=32% Similarity=0.430 Sum_probs=87.5
Q ss_pred CCCEEEEECCcccHHHHHHHH-c-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC--CCCcccEEEEcc
Q 016351 78 QGKTVLDVGTGSGILAIWSAQ-A-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV--LPEKVDVIISEW 152 (391)
Q Consensus 78 ~~~~VLDlGcGtG~l~~~~a~-~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~--~~~~~D~Ivse~ 152 (391)
++.+|||+|||+|.++..+++ . ...+++|+|+| .|++.|+++++.+++. +++++++|+.+++ ++++||+|++..
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~-ni~~~~~d~~~l~~~~~~~~D~I~~~~ 81 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLD-NIEFIQGDIEDLPQELEEKFDIIISNG 81 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTST-TEEEEESBTTCGCGCSSTTEEEEEEES
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccccc-ccceEEeehhccccccCCCeeEEEEcC
Confidence 568999999999999999994 3 24589999999 9999999999999998 5999999999976 447999999964
Q ss_pred ccccccCcchHHHHHHHHhccccCCeEEEcccce
Q 016351 153 MGYFLLRESMFDSVICARDRWLKPTGVMYPSHAR 186 (391)
Q Consensus 153 ~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~~~ 186 (391)
+. .+......+++.+.++|+++|+++.....
T Consensus 82 ~l---~~~~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 82 VL---HHFPDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp TG---GGTSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred ch---hhccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 33 33345678899999999999999876554
|
... |
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=99.57 E-value=3.4e-14 Score=124.26 Aligned_cols=100 Identities=30% Similarity=0.369 Sum_probs=85.7
Q ss_pred CCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEccccc
Q 016351 78 QGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMGY 155 (391)
Q Consensus 78 ~~~~VLDlGcGtG~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~~D~Ivse~~~~ 155 (391)
++.+|||+|||+|.+++.+++. ...+|+++|++ .|++.|+++++.+++.+ ++++++|+.++...++||+|++..+
T Consensus 45 ~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~-i~~~~~d~~~~~~~~~fDlV~~~~~-- 121 (187)
T PRK00107 45 GGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKN-VTVVHGRAEEFGQEEKFDVVTSRAV-- 121 (187)
T ss_pred CCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCC-EEEEeccHhhCCCCCCccEEEEccc--
Confidence 3789999999999999988874 44589999999 99999999999999977 9999999998766578999998642
Q ss_pred cccCcchHHHHHHHHhccccCCeEEEcccc
Q 016351 156 FLLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 156 ~~~~e~~l~~~l~~~~~~L~~gG~ii~~~~ 185 (391)
..++.++..+.++|+|||.+++...
T Consensus 122 -----~~~~~~l~~~~~~LkpGG~lv~~~~ 146 (187)
T PRK00107 122 -----ASLSDLVELCLPLLKPGGRFLALKG 146 (187)
T ss_pred -----cCHHHHHHHHHHhcCCCeEEEEEeC
Confidence 2467889999999999999886533
|
|
| >COG4076 Predicted RNA methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.56 E-value=5.1e-15 Score=124.35 Aligned_cols=136 Identities=29% Similarity=0.406 Sum_probs=119.1
Q ss_pred hhHhhcCChHhHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEE
Q 016351 52 HQKEMLSDRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVE 130 (391)
Q Consensus 52 ~~~~ml~d~~r~~~~~~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~ 130 (391)
+|.++|.|..|...|..+|.+... ..+.|+|+|+|+|++.+|++ +++|+|||.+ ...+.|.++++-+|..+ ++
T Consensus 10 yh~~LL~D~eRlavF~~ai~~va~----d~~~DLGaGsGiLs~~Aa~~-A~rViAiE~dPk~a~~a~eN~~v~g~~n-~e 83 (252)
T COG4076 10 YHLDLLRDVERLAVFTSAIAEVAE----DTFADLGAGSGILSVVAAHA-AERVIAIEKDPKRARLAEENLHVPGDVN-WE 83 (252)
T ss_pred hHhhhhhhHHHHHHHHHHHHHHhh----hceeeccCCcchHHHHHHhh-hceEEEEecCcHHHHHhhhcCCCCCCcc-eE
Confidence 456789999999999999988643 67999999999999999988 7799999999 78899999998888866 99
Q ss_pred EEEcccccCCCCCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcccceeEEeecccC
Q 016351 131 VIEGSVEDIVLPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHARMWVAPIRSG 195 (391)
Q Consensus 131 ~i~~d~~~~~~~~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~~~~~~~~~~~~ 195 (391)
++.+|.++..+ +..|+|+|+.+...+..|...+ ++.++..+|+.++.+||.....-+.|++..
T Consensus 84 vv~gDA~~y~f-e~ADvvicEmlDTaLi~E~qVp-V~n~vleFLr~d~tiiPq~v~~~a~pv~~~ 146 (252)
T COG4076 84 VVVGDARDYDF-ENADVVICEMLDTALIEEKQVP-VINAVLEFLRYDPTIIPQEVRIGANPVRRP 146 (252)
T ss_pred EEecccccccc-cccceeHHHHhhHHhhcccccH-HHHHHHHHhhcCCccccHHHhhccCccccC
Confidence 99999999988 7899999999998888886554 567777799999999999999888888653
|
|
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.4e-14 Score=133.24 Aligned_cols=106 Identities=33% Similarity=0.440 Sum_probs=82.7
Q ss_pred HHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcc
Q 016351 67 FNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKV 145 (391)
Q Consensus 67 ~~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~~ 145 (391)
.+++.+. ..++++|||+|||||+|++.+++.|+++|+|+|++ .+++.|++|++.|++.+++.+. ...+. ..++|
T Consensus 152 l~~l~~~--~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~--~~~~~-~~~~~ 226 (295)
T PF06325_consen 152 LELLEKY--VKPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVEDRIEVS--LSEDL-VEGKF 226 (295)
T ss_dssp HHHHHHH--SSTTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEES--CTSCT-CCS-E
T ss_pred HHHHHHh--ccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEE--Eeccc-ccccC
Confidence 3455554 35678999999999999999999999999999999 8899999999999999877663 22222 12899
Q ss_pred cEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 146 DVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 146 D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
|+|+++++... +..+...+.++|+|||.+|.+
T Consensus 227 dlvvANI~~~v------L~~l~~~~~~~l~~~G~lIlS 258 (295)
T PF06325_consen 227 DLVVANILADV------LLELAPDIASLLKPGGYLILS 258 (295)
T ss_dssp EEEEEES-HHH------HHHHHHHCHHHEEEEEEEEEE
T ss_pred CEEEECCCHHH------HHHHHHHHHHhhCCCCEEEEc
Confidence 99999886543 456788888999999999975
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases | Back alignment and domain information |
|---|
Probab=99.55 E-value=8.9e-14 Score=120.41 Aligned_cols=104 Identities=29% Similarity=0.403 Sum_probs=85.6
Q ss_pred CCCEEEEECCcccHHHHHHHHcCCC-eEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEccccc
Q 016351 78 QGKTVLDVGTGSGILAIWSAQAGAR-KVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMGY 155 (391)
Q Consensus 78 ~~~~VLDlGcGtG~l~~~~a~~g~~-~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~~D~Ivse~~~~ 155 (391)
+..+|||+|||+|.+++.+++.+.. +|+++|++ .+++.++++++.|++.+ ++++..|..+...+++||+|+|++..+
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~-v~~~~~d~~~~~~~~~fD~Iv~NPP~~ 109 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLEN-VEVVQSDLFEALPDGKFDLIVSNPPFH 109 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTT-EEEEESSTTTTCCTTCEEEEEE---SB
T ss_pred cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccc-cccccccccccccccceeEEEEccchh
Confidence 5688999999999999999998765 79999999 89999999999999988 999999987754458999999987533
Q ss_pred cccC--cchHHHHHHHHhccccCCeEEEc
Q 016351 156 FLLR--ESMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 156 ~~~~--e~~l~~~l~~~~~~L~~gG~ii~ 182 (391)
.... ...+..++....++|+|||.+++
T Consensus 110 ~~~~~~~~~~~~~i~~a~~~Lk~~G~l~l 138 (170)
T PF05175_consen 110 AGGDDGLDLLRDFIEQARRYLKPGGRLFL 138 (170)
T ss_dssp TTSHCHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred cccccchhhHHHHHHHHHHhccCCCEEEE
Confidence 2221 12467889999999999999864
|
; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A .... |
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.55 E-value=8.9e-14 Score=133.54 Aligned_cols=104 Identities=21% Similarity=0.222 Sum_probs=87.9
Q ss_pred CCCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-CcccEEEEccc
Q 016351 77 FQGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIISEWM 153 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~-~~~D~Ivse~~ 153 (391)
.++.+|||||||+|.++..+++. ++ +|+|||+| .|++.|+++++.+++.++++++.+|+.+++++ ++||+|++...
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~g~-~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~ 195 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKYGA-NVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMES 195 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCc
Confidence 45689999999999999999986 55 89999999 99999999999999887899999999998776 79999998332
Q ss_pred cccccCcchHHHHHHHHhccccCCeEEEccc
Q 016351 154 GYFLLRESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 154 ~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~ 184 (391)
.+++ .+...++.++.++|||||.+++..
T Consensus 196 ~~h~---~d~~~~l~e~~rvLkpGG~lvi~~ 223 (340)
T PLN02244 196 GEHM---PDKRKFVQELARVAAPGGRIIIVT 223 (340)
T ss_pred hhcc---CCHHHHHHHHHHHcCCCcEEEEEE
Confidence 2222 346788999999999999988753
|
|
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=99.55 E-value=6.3e-14 Score=129.81 Aligned_cols=116 Identities=27% Similarity=0.326 Sum_probs=87.4
Q ss_pred HHHHhcCCCCCCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcc
Q 016351 68 NSIFQNKHHFQGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKV 145 (391)
Q Consensus 68 ~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~~ 145 (391)
+.+.+.+...++.+|||||||.|.+++.+++. |+ +|+||.+| ...+.|++.++..|+.+++++...|.++++ .+|
T Consensus 52 ~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~g~-~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~--~~f 128 (273)
T PF02353_consen 52 DLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERYGC-HVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLP--GKF 128 (273)
T ss_dssp HHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG-----S-
T ss_pred HHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCc-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccC--CCC
Confidence 34555666778999999999999999999998 87 89999999 999999999999999999999999999875 489
Q ss_pred cEEEEccccccccCcchHHHHHHHHhccccCCeEEEccccee
Q 016351 146 DVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHARM 187 (391)
Q Consensus 146 D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~~~~ 187 (391)
|.|+|-.+..... ....+.++..+.++|+|||.++....+.
T Consensus 129 D~IvSi~~~Ehvg-~~~~~~~f~~~~~~LkpgG~~~lq~i~~ 169 (273)
T PF02353_consen 129 DRIVSIEMFEHVG-RKNYPAFFRKISRLLKPGGRLVLQTITH 169 (273)
T ss_dssp SEEEEESEGGGTC-GGGHHHHHHHHHHHSETTEEEEEEEEEE
T ss_pred CEEEEEechhhcC-hhHHHHHHHHHHHhcCCCcEEEEEeccc
Confidence 9999933322222 2357889999999999999998765443
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.55 E-value=3.4e-14 Score=110.07 Aligned_cols=93 Identities=29% Similarity=0.424 Sum_probs=76.1
Q ss_pred EEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-CcccEEEEccccccccCc
Q 016351 83 LDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIISEWMGYFLLRE 160 (391)
Q Consensus 83 LDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~-~~~D~Ivse~~~~~~~~e 160 (391)
||+|||+|..+..+++.+..+|+++|++ ++++.++++....+ +.++++|+.+++++ +.||+|++....+++
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~~~----~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~--- 73 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKNEG----VSFRQGDAEDLPFPDNSFDVVFSNSVLHHL--- 73 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTTST----EEEEESBTTSSSS-TT-EEEEEEESHGGGS---
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhcccccC----chheeehHHhCccccccccccccccceeec---
Confidence 8999999999999999955589999999 99999998876543 67999999999887 899999995543333
Q ss_pred chHHHHHHHHhccccCCeEEEc
Q 016351 161 SMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 161 ~~l~~~l~~~~~~L~~gG~ii~ 182 (391)
.....+++++.|+|||||++++
T Consensus 74 ~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 74 EDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp SHHHHHHHHHHHHEEEEEEEEE
T ss_pred cCHHHHHHHHHHHcCcCeEEeC
Confidence 4678899999999999999874
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... |
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.5e-14 Score=131.69 Aligned_cols=109 Identities=31% Similarity=0.380 Sum_probs=86.2
Q ss_pred HHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCccc
Q 016351 68 NSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVD 146 (391)
Q Consensus 68 ~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~~D 146 (391)
+++.+.. .++++|||+|||||+|++.+++.|+++|+|+|++ ..++.|+++++.|++...++.-..+.......++||
T Consensus 154 ~~Le~~~--~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~~~~~D 231 (300)
T COG2264 154 EALEKLL--KKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPENGPFD 231 (300)
T ss_pred HHHHHhh--cCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhcccCccc
Confidence 3444443 3789999999999999999999999999999999 789999999999998753333333444433336999
Q ss_pred EEEEccccccccCcchHHHHHHHHhccccCCeEEEccc
Q 016351 147 VIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 147 ~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~ 184 (391)
+||++.+.. .+..+...+.++|+|||.+|.+-
T Consensus 232 vIVANILA~------vl~~La~~~~~~lkpgg~lIlSG 263 (300)
T COG2264 232 VIVANILAE------VLVELAPDIKRLLKPGGRLILSG 263 (300)
T ss_pred EEEehhhHH------HHHHHHHHHHHHcCCCceEEEEe
Confidence 999987543 35578888999999999999765
|
|
| >KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.8e-14 Score=127.93 Aligned_cols=121 Identities=23% Similarity=0.335 Sum_probs=92.7
Q ss_pred CChHhHHHHHHHHHhcCCC-CC------CCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCc-
Q 016351 58 SDRVRMDAYFNSIFQNKHH-FQ------GKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDV- 128 (391)
Q Consensus 58 ~d~~r~~~~~~~i~~~~~~-~~------~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~- 128 (391)
.+..|....++-+....+. .+ +++|||+|||+|+|+..+|+.|+ .|+|||.+ .|++.|++....+...+.
T Consensus 62 mn~~Rl~fi~d~~~~~v~~~~p~~k~~~g~~ilDvGCGgGLLSepLArlga-~V~GID~s~~~V~vA~~h~~~dP~~~~~ 140 (282)
T KOG1270|consen 62 MNQTRLPFIRDDLRNRVNNHAPGSKPLLGMKILDVGCGGGLLSEPLARLGA-QVTGIDASDDMVEVANEHKKMDPVLEGA 140 (282)
T ss_pred ccchhhhHHHHHHHhcccccCCCccccCCceEEEeccCccccchhhHhhCC-eeEeecccHHHHHHHHHhhhcCchhccc
Confidence 3455665555555554421 22 47899999999999999999998 79999999 999999999666555443
Q ss_pred ----EEEEEcccccCCCCCcccEEEE-ccccccccCcchHHHHHHHHhccccCCeEEEcccc
Q 016351 129 ----VEVIEGSVEDIVLPEKVDVIIS-EWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 129 ----v~~i~~d~~~~~~~~~~D~Ivs-e~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~~ 185 (391)
+++.+.+++.+. ++||.|+| |. +.+-.++..++..+.++|||+|.+++...
T Consensus 141 ~~y~l~~~~~~~E~~~--~~fDaVvcsev----leHV~dp~~~l~~l~~~lkP~G~lfitti 196 (282)
T KOG1270|consen 141 IAYRLEYEDTDVEGLT--GKFDAVVCSEV----LEHVKDPQEFLNCLSALLKPNGRLFITTI 196 (282)
T ss_pred cceeeehhhcchhhcc--cccceeeeHHH----HHHHhCHHHHHHHHHHHhCCCCceEeeeh
Confidence 778888877765 56999999 33 33445788999999999999999886543
|
|
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=8.5e-14 Score=128.61 Aligned_cols=103 Identities=26% Similarity=0.309 Sum_probs=86.6
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC--CCCcccEEEEccc
Q 016351 77 FQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV--LPEKVDVIISEWM 153 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~--~~~~~D~Ivse~~ 153 (391)
.++.+|||+|||+|.++..+++.|. +|+++|+| .|++.|+++++..++.++++++++|+.++. .+++||+|++..+
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~g~-~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~v 121 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAELGH-QVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHAV 121 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehhH
Confidence 3457999999999999999999986 79999999 999999999999988778999999998864 2378999998544
Q ss_pred cccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 154 GYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 154 ~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
.+.+ .....++..+.++|||||.++..
T Consensus 122 l~~~---~~~~~~l~~~~~~LkpgG~l~i~ 148 (255)
T PRK11036 122 LEWV---ADPKSVLQTLWSVLRPGGALSLM 148 (255)
T ss_pred HHhh---CCHHHHHHHHHHHcCCCeEEEEE
Confidence 3333 24567899999999999998754
|
|
| >KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.3e-13 Score=120.17 Aligned_cols=135 Identities=21% Similarity=0.277 Sum_probs=108.2
Q ss_pred hhhhhhhhhhhhhHhhcCChHh---HHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHc-CC------CeEEEEech
Q 016351 41 ANYFCTYAFLYHQKEMLSDRVR---MDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQA-GA------RKVYAVEAT 110 (391)
Q Consensus 41 ~~~~~~~~~~~~~~~ml~d~~r---~~~~~~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~-g~------~~V~avD~s 110 (391)
...|++++..|+. ++|... ...|.+.....+...++.+|||++||||-++..+.++ +. ++|+.+|+|
T Consensus 63 ~~vF~~vA~~YD~---mND~mSlGiHRlWKd~~v~~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Din 139 (296)
T KOG1540|consen 63 HHVFESVAKKYDI---MNDAMSLGIHRLWKDMFVSKLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDIN 139 (296)
T ss_pred HHHHHHHHHHHHH---HHHHhhcchhHHHHHHhhhccCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCC
Confidence 4466777777655 555543 3456666666677777899999999999999988876 44 689999999
Q ss_pred -HHHHHHHHHHHHcCCCCc--EEEEEcccccCCCC-CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEE
Q 016351 111 -KMSDHARTLVKANNLQDV--VEVIEGSVEDIVLP-EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMY 181 (391)
Q Consensus 111 -~~~~~a~~~~~~~~~~~~--v~~i~~d~~~~~~~-~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii 181 (391)
+|+..+++++++.++... +.++.+|+++++++ ..+|..++ .+.+-+--.++..+++++|+|||||+|.
T Consensus 140 p~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd~s~D~yTi---afGIRN~th~~k~l~EAYRVLKpGGrf~ 211 (296)
T KOG1540|consen 140 PHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFDDDSFDAYTI---AFGIRNVTHIQKALREAYRVLKPGGRFS 211 (296)
T ss_pred HHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCCCCCcceeEEE---ecceecCCCHHHHHHHHHHhcCCCcEEE
Confidence 999999999988888765 99999999999998 89999885 3444333457788999999999999887
|
|
| >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.3e-13 Score=131.05 Aligned_cols=112 Identities=19% Similarity=0.212 Sum_probs=88.5
Q ss_pred HHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccE
Q 016351 69 SIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDV 147 (391)
Q Consensus 69 ~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~~D~ 147 (391)
.+...+...++++|||||||+|.++..+++.|+.+|+|+|.| .++..++...+..+...+|+++.+|+.+++.+++||+
T Consensus 113 ~l~~~l~~l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~~~~FD~ 192 (322)
T PRK15068 113 RVLPHLSPLKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPALKAFDT 192 (322)
T ss_pred HHHHhhCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCCcCCcCE
Confidence 445555556789999999999999999999998789999999 7776655444333333459999999999877789999
Q ss_pred EEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 148 IISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 148 Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
|+|..+.+ +..++..+++.+++.|+|||.+++.
T Consensus 193 V~s~~vl~---H~~dp~~~L~~l~~~LkpGG~lvl~ 225 (322)
T PRK15068 193 VFSMGVLY---HRRSPLDHLKQLKDQLVPGGELVLE 225 (322)
T ss_pred EEECChhh---ccCCHHHHHHHHHHhcCCCcEEEEE
Confidence 99943322 3345678899999999999999875
|
|
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.52 E-value=9.8e-14 Score=126.82 Aligned_cols=115 Identities=30% Similarity=0.325 Sum_probs=97.7
Q ss_pred HHHHhcCCCCCCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcc
Q 016351 68 NSIFQNKHHFQGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKV 145 (391)
Q Consensus 68 ~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~~ 145 (391)
+.+.+.+...+|.+|||||||-|.+++.+|+. |. +|+|+++| ++.+.++++++..|++++|+++..|.+++. ++|
T Consensus 62 ~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y~v-~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~--e~f 138 (283)
T COG2230 62 DLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEYGV-TVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFE--EPF 138 (283)
T ss_pred HHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHcCC-EEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccc--ccc
Confidence 45666677889999999999999999999998 56 79999999 999999999999999988999999999986 559
Q ss_pred cEEEEccccccccCcchHHHHHHHHhccccCCeEEEcccce
Q 016351 146 DVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHAR 186 (391)
Q Consensus 146 D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~~~ 186 (391)
|-|+|-.|...+..+ ..+.++..++++|+|||.++....+
T Consensus 139 DrIvSvgmfEhvg~~-~~~~ff~~~~~~L~~~G~~llh~I~ 178 (283)
T COG2230 139 DRIVSVGMFEHVGKE-NYDDFFKKVYALLKPGGRMLLHSIT 178 (283)
T ss_pred ceeeehhhHHHhCcc-cHHHHHHHHHhhcCCCceEEEEEec
Confidence 999994443333333 4788999999999999999866443
|
|
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.5e-13 Score=129.18 Aligned_cols=102 Identities=22% Similarity=0.289 Sum_probs=86.6
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEccccc
Q 016351 77 FQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMGY 155 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~~D~Ivse~~~~ 155 (391)
.++.+|||+|||+|.++..+++.|. +|+|+|.| .+++.++++++.+++ ++++...|+....++++||+|++..+.+
T Consensus 119 ~~~~~vLDlGcG~G~~~~~la~~g~-~V~avD~s~~ai~~~~~~~~~~~l--~v~~~~~D~~~~~~~~~fD~I~~~~vl~ 195 (287)
T PRK12335 119 VKPGKALDLGCGQGRNSLYLALLGF-DVTAVDINQQSLENLQEIAEKENL--NIRTGLYDINSASIQEEYDFILSTVVLM 195 (287)
T ss_pred cCCCCEEEeCCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcCC--ceEEEEechhcccccCCccEEEEcchhh
Confidence 4456899999999999999999987 79999999 999999999999888 3899999988776678999999976555
Q ss_pred cccCcchHHHHHHHHhccccCCeEEEc
Q 016351 156 FLLRESMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 156 ~~~~e~~l~~~l~~~~~~L~~gG~ii~ 182 (391)
++.. .....++..+.++|+|||+++.
T Consensus 196 ~l~~-~~~~~~l~~~~~~LkpgG~~l~ 221 (287)
T PRK12335 196 FLNR-ERIPAIIKNMQEHTNPGGYNLI 221 (287)
T ss_pred hCCH-HHHHHHHHHHHHhcCCCcEEEE
Confidence 5433 3577899999999999998653
|
|
| >TIGR00452 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.9e-13 Score=127.50 Aligned_cols=114 Identities=17% Similarity=0.141 Sum_probs=87.8
Q ss_pred HHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCccc
Q 016351 68 NSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVD 146 (391)
Q Consensus 68 ~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~~D 146 (391)
.++...+...++++|||||||+|.++..++..|+.+|+|||+| .|+..++...+..+...++.++..++.+++....||
T Consensus 111 ~~~l~~l~~~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~~~FD 190 (314)
T TIGR00452 111 DRVLPHLSPLKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHELYAFD 190 (314)
T ss_pred HHHHHhcCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCCCCcC
Confidence 3455555567889999999999999999998888789999999 788765443332222345889999999887667899
Q ss_pred EEEEccccccccCcchHHHHHHHHhccccCCeEEEccc
Q 016351 147 VIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 147 ~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~ 184 (391)
+|+|..+.++. ..+..++.++++.|+|||.++...
T Consensus 191 ~V~s~gvL~H~---~dp~~~L~el~r~LkpGG~Lvlet 225 (314)
T TIGR00452 191 TVFSMGVLYHR---KSPLEHLKQLKHQLVIKGELVLET 225 (314)
T ss_pred EEEEcchhhcc---CCHHHHHHHHHHhcCCCCEEEEEE
Confidence 99995433332 356678999999999999998754
|
Known examples to date are restricted to the proteobacteria. |
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.6e-13 Score=123.19 Aligned_cols=107 Identities=25% Similarity=0.343 Sum_probs=89.8
Q ss_pred CCCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC---CcccEEEEc
Q 016351 77 FQGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP---EKVDVIISE 151 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~---~~~D~Ivse 151 (391)
....+|||||||+|.+++++|+. ...+|+|||++ .+++.|+++++.|++.++|+++++|+.++... .+||+|+|+
T Consensus 43 ~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~N 122 (248)
T COG4123 43 PKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLIICN 122 (248)
T ss_pred ccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEEeC
Confidence 34689999999999999999998 54689999999 99999999999999999999999999997533 569999999
Q ss_pred cccccccCc---------------chHHHHHHHHhccccCCeEEEcc
Q 016351 152 WMGYFLLRE---------------SMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 152 ~~~~~~~~e---------------~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
+..+-.... ..++.++..+.++|||||.+.+.
T Consensus 123 PPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V 169 (248)
T COG4123 123 PPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFV 169 (248)
T ss_pred CCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEE
Confidence 853322111 24788899999999999998754
|
|
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.47 E-value=6.9e-13 Score=121.03 Aligned_cols=143 Identities=24% Similarity=0.257 Sum_probs=104.0
Q ss_pred cccchhhhhhhhhhhhhH-hhcCChHhHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcC--CCeEEEEech-HH
Q 016351 37 EVDFANYFCTYAFLYHQK-EMLSDRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAG--ARKVYAVEAT-KM 112 (391)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~-~ml~d~~r~~~~~~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g--~~~V~avD~s-~~ 112 (391)
..+...+|+.++..|+.. .... ......+...+...+...++.+|||+|||+|.++..+++.+ ..+|+++|++ .+
T Consensus 10 ~~~~~~~~~~~~~~y~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~ 88 (239)
T PRK00216 10 QEKVAEMFDSIAPKYDLMNDLLS-FGLHRVWRRKTIKWLGVRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGM 88 (239)
T ss_pred hHHHHHHHHHhhhhHHHHHHHHh-cCCcHHHHHHHHHHhCCCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHH
Confidence 335566888877777531 1111 11122333334444444467899999999999999999886 3689999999 89
Q ss_pred HHHHHHHHHHcCCCCcEEEEEcccccCCCC-CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 113 SDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 113 ~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~-~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
++.+++++..+++.++++++.+|+.++..+ +.||+|++.. .+.+-..+..++..+.++|+|||.++..
T Consensus 89 ~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~I~~~~---~l~~~~~~~~~l~~~~~~L~~gG~li~~ 157 (239)
T PRK00216 89 LAVGREKLRDLGLSGNVEFVQGDAEALPFPDNSFDAVTIAF---GLRNVPDIDKALREMYRVLKPGGRLVIL 157 (239)
T ss_pred HHHHHHhhcccccccCeEEEecccccCCCCCCCccEEEEec---ccccCCCHHHHHHHHHHhccCCcEEEEE
Confidence 999999988776766799999999887654 7899999733 2333345778899999999999988754
|
|
| >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.8e-13 Score=116.51 Aligned_cols=109 Identities=22% Similarity=0.250 Sum_probs=84.0
Q ss_pred cCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEc
Q 016351 73 NKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISE 151 (391)
Q Consensus 73 ~~~~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~~D~Ivse 151 (391)
.++...-.++||+|||.|.++..+|..+. +++++|++ ..++.|+++... .+ .|++++.|+.+..++++||+||+.
T Consensus 38 aLp~~ry~~alEvGCs~G~lT~~LA~rCd-~LlavDis~~Al~~Ar~Rl~~--~~-~V~~~~~dvp~~~P~~~FDLIV~S 113 (201)
T PF05401_consen 38 ALPRRRYRRALEVGCSIGVLTERLAPRCD-RLLAVDISPRALARARERLAG--LP-HVEWIQADVPEFWPEGRFDLIVLS 113 (201)
T ss_dssp HHTTSSEEEEEEE--TTSHHHHHHGGGEE-EEEEEES-HHHHHHHHHHTTT---S-SEEEEES-TTT---SS-EEEEEEE
T ss_pred hcCccccceeEecCCCccHHHHHHHHhhC-ceEEEeCCHHHHHHHHHhcCC--CC-CeEEEECcCCCCCCCCCeeEEEEe
Confidence 34444557899999999999999998864 89999999 899999988864 33 499999999998777999999986
Q ss_pred cccccccCcchHHHHHHHHhccccCCeEEEcccc
Q 016351 152 WMGYFLLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 152 ~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~~ 185 (391)
-+.|++.....+..++..+...|+|||.+|+...
T Consensus 114 EVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~ 147 (201)
T PF05401_consen 114 EVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHA 147 (201)
T ss_dssp S-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred hHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 6788887766788899999999999999998643
|
The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. |
| >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=3.1e-13 Score=124.19 Aligned_cols=106 Identities=23% Similarity=0.344 Sum_probs=87.3
Q ss_pred CCCCEEEEECCcccHHHHHHHHc---CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEcc
Q 016351 77 FQGKTVLDVGTGSGILAIWSAQA---GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEW 152 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~l~~~~a~~---g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~~D~Ivse~ 152 (391)
.++.+|||||||+|.++..+++. ...+|+|+|+| .|++.|++++..++..++++++++|+.+++++ .+|+|++..
T Consensus 55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~-~~D~vv~~~ 133 (247)
T PRK15451 55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIE-NASMVVLNF 133 (247)
T ss_pred CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCC-CCCEEehhh
Confidence 36689999999999999888772 23489999999 99999999999888877899999999987654 699999865
Q ss_pred ccccccCcchHHHHHHHHhccccCCeEEEccc
Q 016351 153 MGYFLLRESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 153 ~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~ 184 (391)
..+++.. .....+++.+.+.|+|||.++...
T Consensus 134 ~l~~l~~-~~~~~~l~~i~~~LkpGG~l~l~e 164 (247)
T PRK15451 134 TLQFLEP-SERQALLDKIYQGLNPGGALVLSE 164 (247)
T ss_pred HHHhCCH-HHHHHHHHHHHHhcCCCCEEEEEE
Confidence 4444443 235678999999999999998764
|
|
| >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A | Back alignment and domain information |
|---|
Probab=99.45 E-value=3.5e-13 Score=109.05 Aligned_cols=105 Identities=33% Similarity=0.438 Sum_probs=84.8
Q ss_pred CCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC--CC-CcccEEEEcccc
Q 016351 79 GKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV--LP-EKVDVIISEWMG 154 (391)
Q Consensus 79 ~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~--~~-~~~D~Ivse~~~ 154 (391)
+.+|||+|||+|.+++.+++.+..+++++|++ ..++.|+.++..+++.++++++++|..++. ++ ++||+|++++..
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~ 80 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPY 80 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--ST
T ss_pred CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCCC
Confidence 45899999999999999999985699999999 899999999999999888999999998875 33 899999998743
Q ss_pred cccc-----CcchHHHHHHHHhccccCCeEEEcc
Q 016351 155 YFLL-----RESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 155 ~~~~-----~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
.... .......+++.+.++|+|||.++..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~ 114 (117)
T PF13659_consen 81 GPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFI 114 (117)
T ss_dssp TSBTT----GGCHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ccccccchhhHHHHHHHHHHHHHHcCCCeEEEEE
Confidence 2111 1123567899999999999998743
|
... |
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.3e-12 Score=105.14 Aligned_cols=107 Identities=19% Similarity=0.272 Sum_probs=84.6
Q ss_pred hcCCCCCCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccC--CCCCcccE
Q 016351 72 QNKHHFQGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDI--VLPEKVDV 147 (391)
Q Consensus 72 ~~~~~~~~~~VLDlGcGtG~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~--~~~~~~D~ 147 (391)
..+...++.+|||+|||+|.++..+++. +..+|+++|.+ .+++.++++++.+++.+ ++++.+|.... ..+++||+
T Consensus 13 ~~~~~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~ 91 (124)
T TIGR02469 13 SKLRLRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSN-IVIVEGDAPEALEDSLPEPDR 91 (124)
T ss_pred HHcCCCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCc-eEEEeccccccChhhcCCCCE
Confidence 3333445679999999999999999987 34689999999 99999999999888764 89999987652 12378999
Q ss_pred EEEccccccccCcchHHHHHHHHhccccCCeEEEcccc
Q 016351 148 IISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 148 Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~~ 185 (391)
|++... ......+++.+.++|+|||.++...+
T Consensus 92 v~~~~~------~~~~~~~l~~~~~~Lk~gG~li~~~~ 123 (124)
T TIGR02469 92 VFIGGS------GGLLQEILEAIWRRLRPGGRIVLNAI 123 (124)
T ss_pred EEECCc------chhHHHHHHHHHHHcCCCCEEEEEec
Confidence 998431 12346789999999999999987643
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.1e-12 Score=126.18 Aligned_cols=114 Identities=18% Similarity=0.177 Sum_probs=87.8
Q ss_pred HHhcCCCCCCCEEEEECCcccHHHHHHHHcC-CCeEEEEech-HHHHHHHHHHHHcCCC--CcEEEEEcccccCCCCCcc
Q 016351 70 IFQNKHHFQGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEAT-KMSDHARTLVKANNLQ--DVVEVIEGSVEDIVLPEKV 145 (391)
Q Consensus 70 i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g-~~~V~avD~s-~~~~~a~~~~~~~~~~--~~v~~i~~d~~~~~~~~~~ 145 (391)
+.+.++...+.+|||+|||+|.+++.+++.+ ..+|+++|.| .+++.|+++++.|+.. .+++++..|+.+...+++|
T Consensus 220 lL~~lp~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~~~~~~f 299 (378)
T PRK15001 220 FMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVEPFRF 299 (378)
T ss_pred HHHhCCcccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccccCCCCCE
Confidence 4444444445689999999999999999874 4489999999 8999999999988754 2689999998664334689
Q ss_pred cEEEEcccccccc--CcchHHHHHHHHhccccCCeEEEcc
Q 016351 146 DVIISEWMGYFLL--RESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 146 D~Ivse~~~~~~~--~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
|+|+|++..+... .......++..+.++|+|||.+++.
T Consensus 300 DlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV 339 (378)
T PRK15001 300 NAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIV 339 (378)
T ss_pred EEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEE
Confidence 9999987543321 1223567888899999999998765
|
|
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.5e-12 Score=122.28 Aligned_cols=101 Identities=30% Similarity=0.417 Sum_probs=84.5
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEccccc
Q 016351 77 FQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMGY 155 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~~D~Ivse~~~~ 155 (391)
.++++|||+|||+|.+++.+++.|+.+|+|+|++ .+++.|++++..+++.+++.+...+.... ..++||+|+++.+.
T Consensus 158 ~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~-~~~~fDlVvan~~~- 235 (288)
T TIGR00406 158 LKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQP-IEGKADVIVANILA- 235 (288)
T ss_pred CCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccc-cCCCceEEEEecCH-
Confidence 4678999999999999999999988899999999 89999999999999988788887764332 24789999997642
Q ss_pred cccCcchHHHHHHHHhccccCCeEEEccc
Q 016351 156 FLLRESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 156 ~~~~e~~l~~~l~~~~~~L~~gG~ii~~~ 184 (391)
..+..++..+.++|+|||.++.+.
T Consensus 236 -----~~l~~ll~~~~~~LkpgG~li~sg 259 (288)
T TIGR00406 236 -----EVIKELYPQFSRLVKPGGWLILSG 259 (288)
T ss_pred -----HHHHHHHHHHHHHcCCCcEEEEEe
Confidence 234567888999999999998653
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.9e-13 Score=106.73 Aligned_cols=93 Identities=20% Similarity=0.379 Sum_probs=75.4
Q ss_pred EEEECCcccHHHHHHHHcC----CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-CcccEEEE-cc-c
Q 016351 82 VLDVGTGSGILAIWSAQAG----ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIIS-EW-M 153 (391)
Q Consensus 82 VLDlGcGtG~l~~~~a~~g----~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~-~~~D~Ivs-e~-~ 153 (391)
|||+|||+|..+..+++.. ..+++++|+| .|++.+++.....+. +++++++|+.+++.. ++||+|+| .. +
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~--~~~~~~~D~~~l~~~~~~~D~v~~~~~~~ 78 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP--KVRFVQADARDLPFSDGKFDLVVCSGLSL 78 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT--TSEEEESCTTCHHHHSSSEEEEEE-TTGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC--ceEEEECCHhHCcccCCCeeEEEEcCCcc
Confidence 7999999999999998873 2589999999 999999999988776 499999999998654 79999999 33 3
Q ss_pred cccccCcchHHHHHHHHhccccCCe
Q 016351 154 GYFLLRESMFDSVICARDRWLKPTG 178 (391)
Q Consensus 154 ~~~~~~e~~l~~~l~~~~~~L~~gG 178 (391)
.+ .....+..+++.+.++|+|||
T Consensus 79 ~~--~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 79 HH--LSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp GG--SSHHHHHHHHHHHHHTEEEEE
T ss_pred CC--CCHHHHHHHHHHHHHHhCCCC
Confidence 33 344468899999999999998
|
|
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.1e-12 Score=121.01 Aligned_cols=106 Identities=20% Similarity=0.285 Sum_probs=83.8
Q ss_pred HHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-Ccc
Q 016351 68 NSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKV 145 (391)
Q Consensus 68 ~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~-~~~ 145 (391)
+.+.+.+...+..+|||+|||+|.++..+++.+. +|+++|+| .|++.|+++.. .+.++++|+.+++++ ++|
T Consensus 32 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~~D~s~~~l~~a~~~~~------~~~~~~~d~~~~~~~~~~f 104 (251)
T PRK10258 32 DALLAMLPQRKFTHVLDAGCGPGWMSRYWRERGS-QVTALDLSPPMLAQARQKDA------ADHYLAGDIESLPLATATF 104 (251)
T ss_pred HHHHHhcCccCCCeEEEeeCCCCHHHHHHHHcCC-eEEEEECCHHHHHHHHhhCC------CCCEEEcCcccCcCCCCcE
Confidence 3444444444568999999999999999988876 89999999 89998887642 157889999988766 689
Q ss_pred cEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 146 DVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 146 D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
|+|+|... +.+..++..++.++.++|+|||.+++.
T Consensus 105 D~V~s~~~---l~~~~d~~~~l~~~~~~Lk~gG~l~~~ 139 (251)
T PRK10258 105 DLAWSNLA---VQWCGNLSTALRELYRVVRPGGVVAFT 139 (251)
T ss_pred EEEEECch---hhhcCCHHHHHHHHHHHcCCCeEEEEE
Confidence 99998543 233345778999999999999999864
|
|
| >TIGR00740 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.3e-12 Score=119.58 Aligned_cols=105 Identities=17% Similarity=0.266 Sum_probs=85.6
Q ss_pred CCCEEEEECCcccHHHHHHHHc---CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEccc
Q 016351 78 QGKTVLDVGTGSGILAIWSAQA---GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWM 153 (391)
Q Consensus 78 ~~~~VLDlGcGtG~l~~~~a~~---g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~~D~Ivse~~ 153 (391)
++.+|||||||+|.++..+++. ...+|+|+|+| .|++.|+++++..+...+++++++|+.+++++ .+|+|++...
T Consensus 53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~d~v~~~~~ 131 (239)
T TIGR00740 53 PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIK-NASMVILNFT 131 (239)
T ss_pred CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCC-CCCEEeeecc
Confidence 5679999999999999988875 23479999999 99999999988777666799999999988764 6899988554
Q ss_pred cccccCcchHHHHHHHHhccccCCeEEEccc
Q 016351 154 GYFLLRESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 154 ~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~ 184 (391)
.+++.. .....+++.+.+.|+|||.+++..
T Consensus 132 l~~~~~-~~~~~~l~~i~~~LkpgG~l~i~d 161 (239)
T TIGR00740 132 LQFLPP-EDRIALLTKIYEGLNPNGVLVLSE 161 (239)
T ss_pred hhhCCH-HHHHHHHHHHHHhcCCCeEEEEee
Confidence 343332 245678999999999999998764
|
A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. |
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.2e-12 Score=121.28 Aligned_cols=112 Identities=21% Similarity=0.257 Sum_probs=85.9
Q ss_pred HHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-CcccE
Q 016351 70 IFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVDV 147 (391)
Q Consensus 70 i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~-~~~D~ 147 (391)
+...+...++.+|||||||+|..+..+++....+|+|+|++ .|++.|+++... .++++++.+|+.+.+++ ++||+
T Consensus 44 ~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~---~~~i~~~~~D~~~~~~~~~~FD~ 120 (263)
T PTZ00098 44 ILSDIELNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSD---KNKIEFEANDILKKDFPENTFDM 120 (263)
T ss_pred HHHhCCCCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCc---CCceEEEECCcccCCCCCCCeEE
Confidence 33445556778999999999999988877533389999999 899999987654 34599999999887766 78999
Q ss_pred EEEccccccccCcchHHHHHHHHhccccCCeEEEcccc
Q 016351 148 IISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 148 Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~~ 185 (391)
|++.....+.. ......+++.+.++|||||.+++...
T Consensus 121 V~s~~~l~h~~-~~d~~~~l~~i~r~LkPGG~lvi~d~ 157 (263)
T PTZ00098 121 IYSRDAILHLS-YADKKKLFEKCYKWLKPNGILLITDY 157 (263)
T ss_pred EEEhhhHHhCC-HHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 99832212221 12567899999999999999987543
|
|
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.8e-12 Score=113.22 Aligned_cols=104 Identities=22% Similarity=0.244 Sum_probs=83.6
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEccccc
Q 016351 77 FQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMGY 155 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~~D~Ivse~~~~ 155 (391)
.++.+|||+|||+|.++..+++.+. +|+++|++ .+++.++++++.++.. ++++.+|..+.. .++||+|++++..+
T Consensus 18 ~~~~~vLdlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~--~~~~~~d~~~~~-~~~fD~Vi~n~p~~ 93 (179)
T TIGR00537 18 LKPDDVLEIGAGTGLVAIRLKGKGK-CILTTDINPFAVKELRENAKLNNVG--LDVVMTDLFKGV-RGKFDVILFNPPYL 93 (179)
T ss_pred cCCCeEEEeCCChhHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHHcCCc--eEEEEccccccc-CCcccEEEECCCCC
Confidence 4567899999999999999999887 89999999 9999999999988864 899999987754 46899999976432
Q ss_pred cccC------------------cchHHHHHHHHhccccCCeEEEccc
Q 016351 156 FLLR------------------ESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 156 ~~~~------------------e~~l~~~l~~~~~~L~~gG~ii~~~ 184 (391)
.... ...+..+++.+.++|+|||.++...
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~ 140 (179)
T TIGR00537 94 PLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQ 140 (179)
T ss_pred CCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEE
Confidence 1111 1125678899999999999987643
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.4e-12 Score=120.54 Aligned_cols=103 Identities=19% Similarity=0.235 Sum_probs=81.6
Q ss_pred HHhcCCCCCCCEEEEECCcccHHHHHHHHcC-CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccE
Q 016351 70 IFQNKHHFQGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDV 147 (391)
Q Consensus 70 i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g-~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~~D~ 147 (391)
+...+...++.+|||||||+|.++..+++.. ..+|+|+|+| .|++.|++. .++++++|+.++...++||+
T Consensus 21 ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~~~~~fD~ 92 (255)
T PRK14103 21 LLARVGAERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER--------GVDARTGDVRDWKPKPDTDV 92 (255)
T ss_pred HHHhCCCCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc--------CCcEEEcChhhCCCCCCceE
Confidence 3444555677899999999999999998872 2389999999 899888652 27899999988754479999
Q ss_pred EEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 148 IISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 148 Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
|+|..+.+++ .+...++.++.+.|||||.+++.
T Consensus 93 v~~~~~l~~~---~d~~~~l~~~~~~LkpgG~l~~~ 125 (255)
T PRK14103 93 VVSNAALQWV---PEHADLLVRWVDELAPGSWIAVQ 125 (255)
T ss_pred EEEehhhhhC---CCHHHHHHHHHHhCCCCcEEEEE
Confidence 9996543333 34678899999999999998865
|
|
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.5e-12 Score=113.86 Aligned_cols=108 Identities=29% Similarity=0.273 Sum_probs=83.9
Q ss_pred HHHHHhcCCCCCCCEEEEECCcccHHHHHHHHc-C-CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-
Q 016351 67 FNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQA-G-ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP- 142 (391)
Q Consensus 67 ~~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~-g-~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~- 142 (391)
...+.+.+...++.+|||+|||+|.++..+++. + ..+|+++|++ .+++.|+++++.+++.++++++.+|..+....
T Consensus 61 ~~~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~~ 140 (205)
T PRK13944 61 VAMMCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEKH 140 (205)
T ss_pred HHHHHHhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCccC
Confidence 344555555567789999999999999888875 2 3489999999 99999999999999887799999999875333
Q ss_pred CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 143 EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 143 ~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
.+||+|++..... .+...+.+.|+|||+++..
T Consensus 141 ~~fD~Ii~~~~~~---------~~~~~l~~~L~~gG~lvi~ 172 (205)
T PRK13944 141 APFDAIIVTAAAS---------TIPSALVRQLKDGGVLVIP 172 (205)
T ss_pred CCccEEEEccCcc---------hhhHHHHHhcCcCcEEEEE
Confidence 6899999854211 2234567889999998753
|
|
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.5e-12 Score=117.92 Aligned_cols=102 Identities=19% Similarity=0.180 Sum_probs=85.2
Q ss_pred CEEEEECCcccHHHHHHHHcC-CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEccccccc
Q 016351 80 KTVLDVGTGSGILAIWSAQAG-ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMGYFL 157 (391)
Q Consensus 80 ~~VLDlGcGtG~l~~~~a~~g-~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~~D~Ivse~~~~~~ 157 (391)
++|||||||+|.++..+++.. ..+|+|+|+| .+++.|+++++..++.++++++..|+.+.+.+++||+|++..+.+..
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~~~fD~I~~~~~l~~~ 80 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFPDTYDLVFGFEVIHHI 80 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCCCCCCEeehHHHHHhC
Confidence 479999999999999888863 3489999999 89999999999999988899999999766556889999984332222
Q ss_pred cCcchHHHHHHHHhccccCCeEEEccc
Q 016351 158 LRESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 158 ~~e~~l~~~l~~~~~~L~~gG~ii~~~ 184 (391)
.....+++.+.++|+|||.+++..
T Consensus 81 ---~~~~~~l~~~~~~LkpgG~l~i~~ 104 (224)
T smart00828 81 ---KDKMDLFSNISRHLKDGGHLVLAD 104 (224)
T ss_pred ---CCHHHHHHHHHHHcCCCCEEEEEE
Confidence 346789999999999999998654
|
|
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.6e-12 Score=115.36 Aligned_cols=105 Identities=30% Similarity=0.339 Sum_probs=83.9
Q ss_pred CCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEcccc
Q 016351 76 HFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMG 154 (391)
Q Consensus 76 ~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~~D~Ivse~~~ 154 (391)
..++.+|||+|||+|.++..+++.++.+|+++|++ .+++.++++++.+++. ++++++|+.+....++||+|++++.
T Consensus 34 ~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~--~~~~~~d~~~~~~~~~fD~Vi~npP- 110 (223)
T PRK14967 34 LGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGVD--VDVRRGDWARAVEFRPFDVVVSNPP- 110 (223)
T ss_pred cCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCCe--eEEEECchhhhccCCCeeEEEECCC-
Confidence 34568999999999999999998877689999999 8999999999988873 8999999877533478999999863
Q ss_pred ccccCc-------------------chHHHHHHHHhccccCCeEEEcc
Q 016351 155 YFLLRE-------------------SMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 155 ~~~~~e-------------------~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
+....+ ..+..+++.+.++|+|||+++..
T Consensus 111 y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~ 158 (223)
T PRK14967 111 YVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLV 158 (223)
T ss_pred CCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 221111 12456788889999999998853
|
|
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.40 E-value=5.6e-12 Score=110.92 Aligned_cols=104 Identities=22% Similarity=0.269 Sum_probs=83.2
Q ss_pred hcCCCCCCCEEEEECCcccHHHHHHHHcC-CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEE
Q 016351 72 QNKHHFQGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVII 149 (391)
Q Consensus 72 ~~~~~~~~~~VLDlGcGtG~l~~~~a~~g-~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~~D~Iv 149 (391)
..+...++.+|||+|||+|.+++.+++.+ ..+|+++|++ .+++.|+++++.+++.+ ++++.+|... .++++||+|+
T Consensus 25 ~~l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~-i~~~~~d~~~-~~~~~~D~v~ 102 (187)
T PRK08287 25 SKLELHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGN-IDIIPGEAPI-ELPGKADAIF 102 (187)
T ss_pred HhcCCCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCC-eEEEecCchh-hcCcCCCEEE
Confidence 33444567899999999999999998874 3589999999 89999999999888754 9999998753 3457899999
Q ss_pred EccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 150 SEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 150 se~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
+.... ..+..++..+.+.|+|||.++..
T Consensus 103 ~~~~~------~~~~~~l~~~~~~Lk~gG~lv~~ 130 (187)
T PRK08287 103 IGGSG------GNLTAIIDWSLAHLHPGGRLVLT 130 (187)
T ss_pred ECCCc------cCHHHHHHHHHHhcCCCeEEEEE
Confidence 85321 13567888899999999998864
|
|
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=99.40 E-value=3e-12 Score=121.54 Aligned_cols=131 Identities=18% Similarity=0.223 Sum_probs=92.5
Q ss_pred hhhhhhhhhhhHhhcCChHhHHHHHHHHHhcCC-CCCCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHH
Q 016351 43 YFCTYAFLYHQKEMLSDRVRMDAYFNSIFQNKH-HFQGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTL 119 (391)
Q Consensus 43 ~~~~~~~~~~~~~ml~d~~r~~~~~~~i~~~~~-~~~~~~VLDlGcGtG~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~ 119 (391)
+|+..+..|++. +......+...+.+.+... ..++.+|||||||+|.+++.+++. +..+|+++|.| .|++.|+++
T Consensus 79 ~y~~lA~~YD~~--~~~~~~~e~~r~~~l~~~~l~~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k 156 (340)
T PLN02490 79 FYRFLSIVYDHI--INPGHWTEDMRDDALEPADLSDRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQK 156 (340)
T ss_pred EccceeeecCCC--eecCcchHHHHHHHHhhcccCCCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHh
Confidence 567777777761 2212223333333333222 235679999999999999888775 44589999999 999999887
Q ss_pred HHHcCCCCcEEEEEcccccCCCC-CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEc
Q 016351 120 VKANNLQDVVEVIEGSVEDIVLP-EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 120 ~~~~~~~~~v~~i~~d~~~~~~~-~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~ 182 (391)
... .+++++.+|+.++.++ +.||+|++....+.+ .+...+++++.++|+|||.+++
T Consensus 157 ~~~----~~i~~i~gD~e~lp~~~~sFDvVIs~~~L~~~---~d~~~~L~e~~rvLkPGG~LvI 213 (340)
T PLN02490 157 EPL----KECKIIEGDAEDLPFPTDYADRYVSAGSIEYW---PDPQRGIKEAYRVLKIGGKACL 213 (340)
T ss_pred hhc----cCCeEEeccHHhCCCCCCceeEEEEcChhhhC---CCHHHHHHHHHHhcCCCcEEEE
Confidence 643 2388999999998765 789999984322222 2356789999999999999875
|
|
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Probab=99.40 E-value=4.5e-12 Score=114.40 Aligned_cols=135 Identities=24% Similarity=0.229 Sum_probs=97.2
Q ss_pred hhhhhhhhhhhHhhcCChHhHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCC--CeEEEEech-HHHHHHHHH
Q 016351 43 YFCTYAFLYHQKEMLSDRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGA--RKVYAVEAT-KMSDHARTL 119 (391)
Q Consensus 43 ~~~~~~~~~~~~~ml~d~~r~~~~~~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g~--~~V~avD~s-~~~~~a~~~ 119 (391)
.|+..+..|+...+.........+...+...+...++.+|||+|||+|.++..+++.+. .+++++|++ .++..++++
T Consensus 4 ~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~ 83 (223)
T TIGR01934 4 MFDRIAPKYDLLNDLLSFGLHRLWRRRAVKLIGVFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKK 83 (223)
T ss_pred HHHHHHhhhhHHHHHHhcccHHHHHHHHHHHhccCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHH
Confidence 45555555555433322222234444555544445778999999999999999988865 389999999 888888887
Q ss_pred HHHcCCCCcEEEEEcccccCCCC-CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 120 VKANNLQDVVEVIEGSVEDIVLP-EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 120 ~~~~~~~~~v~~i~~d~~~~~~~-~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
.. ...+++++.+|+.+...+ ++||+|++.. .+.+...+..+++.+.++|+|||.++..
T Consensus 84 ~~---~~~~i~~~~~d~~~~~~~~~~~D~i~~~~---~~~~~~~~~~~l~~~~~~L~~gG~l~~~ 142 (223)
T TIGR01934 84 SE---LPLNIEFIQADAEALPFEDNSFDAVTIAF---GLRNVTDIQKALREMYRVLKPGGRLVIL 142 (223)
T ss_pred hc---cCCCceEEecchhcCCCCCCcEEEEEEee---eeCCcccHHHHHHHHHHHcCCCcEEEEE
Confidence 65 334589999999987655 6899999743 2333445778899999999999998854
|
Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. |
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.9e-12 Score=117.25 Aligned_cols=127 Identities=17% Similarity=0.164 Sum_probs=87.8
Q ss_pred chhhhhhhhhhhhhHhhcCChHhHHHHHHHHHhcCC--CCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHH
Q 016351 40 FANYFCTYAFLYHQKEMLSDRVRMDAYFNSIFQNKH--HFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHA 116 (391)
Q Consensus 40 ~~~~~~~~~~~~~~~~ml~d~~r~~~~~~~i~~~~~--~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a 116 (391)
-...|+..+..|+....+........|++.+.+.+. ..++.+|||||||||.++..+++....+|+|+|+| +|++.|
T Consensus 11 v~~~f~~iA~~YD~~n~~~s~g~~~~wr~~~~~~l~~~~~~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a 90 (226)
T PRK05785 11 LQEAYNKIPKAYDRANRFISFNQDVRWRAELVKTILKYCGRPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMN 90 (226)
T ss_pred HHHHHHhhhHHHHHhhhhccCCCcHHHHHHHHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHH
Confidence 356788888888764221111112233332222211 12367999999999999999988732389999999 999998
Q ss_pred HHHHHHcCCCCcEEEEEcccccCCCC-CcccEEEEccccccccCcchHHHHHHHHhccccCCe
Q 016351 117 RTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTG 178 (391)
Q Consensus 117 ~~~~~~~~~~~~v~~i~~d~~~~~~~-~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG 178 (391)
++. ..++++|+++++++ ++||+|++.. .+.+-.+++..++++.|+|||..
T Consensus 91 ~~~---------~~~~~~d~~~lp~~d~sfD~v~~~~---~l~~~~d~~~~l~e~~RvLkp~~ 141 (226)
T PRK05785 91 LVA---------DDKVVGSFEALPFRDKSFDVVMSSF---ALHASDNIEKVIAEFTRVSRKQV 141 (226)
T ss_pred Hhc---------cceEEechhhCCCCCCCEEEEEecC---hhhccCCHHHHHHHHHHHhcCce
Confidence 753 24578899998876 8999999843 23333467889999999999953
|
|
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Probab=99.39 E-value=4.7e-12 Score=118.49 Aligned_cols=107 Identities=26% Similarity=0.298 Sum_probs=84.7
Q ss_pred CCCEEEEECCcccHHHHHHHHcC-CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEccccc
Q 016351 78 QGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMGY 155 (391)
Q Consensus 78 ~~~~VLDlGcGtG~l~~~~a~~g-~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~~D~Ivse~~~~ 155 (391)
++.+|||+|||+|.+++.+++.. ..+|+|+|+| .+++.|+++++.+++.++|+++++|+.+....++||+|+|++. +
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~~~~~fD~Iv~NPP-y 199 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAALPGRKYDLIVSNPP-Y 199 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccCCCCccEEEECCC-C
Confidence 45789999999999999999863 3489999999 9999999999999998789999999865322358999999863 1
Q ss_pred cc-----------cCc------------chHHHHHHHHhccccCCeEEEcccc
Q 016351 156 FL-----------LRE------------SMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 156 ~~-----------~~e------------~~l~~~l~~~~~~L~~gG~ii~~~~ 185 (391)
.. .++ .....++..+.++|+|||.++....
T Consensus 200 ~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g 252 (284)
T TIGR03533 200 VDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVG 252 (284)
T ss_pred CCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 11 011 1235678888999999999986654
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. |
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=5e-12 Score=112.24 Aligned_cols=106 Identities=24% Similarity=0.353 Sum_probs=85.6
Q ss_pred hcCCCCCCCEEEEECCcccHHHHHHHHc-C-CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC--CCCccc
Q 016351 72 QNKHHFQGKTVLDVGTGSGILAIWSAQA-G-ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV--LPEKVD 146 (391)
Q Consensus 72 ~~~~~~~~~~VLDlGcGtG~l~~~~a~~-g-~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~--~~~~~D 146 (391)
..+...++.+|||+|||+|.+++.+++. + ..+|+++|++ .+++.|+++++.+++.++++++.+|..+.. ..++||
T Consensus 34 ~~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D 113 (198)
T PRK00377 34 SKLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKFD 113 (198)
T ss_pred HHcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCCC
Confidence 3445567899999999999999998875 3 3589999999 999999999999997667999999987742 236899
Q ss_pred EEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 147 VIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 147 ~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
.|++.. ....+..+++.+.+.|+|||.++..
T Consensus 114 ~V~~~~------~~~~~~~~l~~~~~~LkpgG~lv~~ 144 (198)
T PRK00377 114 RIFIGG------GSEKLKEIISASWEIIKKGGRIVID 144 (198)
T ss_pred EEEECC------CcccHHHHHHHHHHHcCCCcEEEEE
Confidence 999742 1124677899999999999998853
|
|
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.39 E-value=3.8e-12 Score=117.16 Aligned_cols=94 Identities=39% Similarity=0.524 Sum_probs=77.9
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEccccc
Q 016351 77 FQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMGY 155 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~~D~Ivse~~~~ 155 (391)
.++.+|||+|||+|.+++.+++.|+.+|+|+|++ .+++.|+++++.+++.+.+.+..++. +||+|+++...
T Consensus 118 ~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~~-------~fD~Vvani~~- 189 (250)
T PRK00517 118 LPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGVELNVYLPQGDL-------KADVIVANILA- 189 (250)
T ss_pred CCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEccCCC-------CcCEEEEcCcH-
Confidence 4678999999999999999998888789999999 89999999999998865566554432 79999986532
Q ss_pred cccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 156 FLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 156 ~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
..+..++..+.++|+|||.++.+
T Consensus 190 -----~~~~~l~~~~~~~LkpgG~lils 212 (250)
T PRK00517 190 -----NPLLELAPDLARLLKPGGRLILS 212 (250)
T ss_pred -----HHHHHHHHHHHHhcCCCcEEEEE
Confidence 13556788899999999999965
|
|
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.38 E-value=4.6e-12 Score=114.02 Aligned_cols=106 Identities=25% Similarity=0.224 Sum_probs=82.6
Q ss_pred HHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCC--CeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-C
Q 016351 68 NSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGA--RKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-E 143 (391)
Q Consensus 68 ~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g~--~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~-~ 143 (391)
..+.+.+...++.+|||||||+|.++..+++... .+|+++|++ .+++.|+++++.+++.+ ++++++|..+.... .
T Consensus 67 ~~~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~-v~~~~~d~~~~~~~~~ 145 (215)
T TIGR00080 67 AMMTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDN-VIVIVGDGTQGWEPLA 145 (215)
T ss_pred HHHHHHhCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCC-eEEEECCcccCCcccC
Confidence 3444555566789999999999999999998742 369999999 99999999999999854 99999999775332 6
Q ss_pred cccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 144 KVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 144 ~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
+||+|+++... ..+.+.+.+.|+|||+++..
T Consensus 146 ~fD~Ii~~~~~---------~~~~~~~~~~L~~gG~lv~~ 176 (215)
T TIGR00080 146 PYDRIYVTAAG---------PKIPEALIDQLKEGGILVMP 176 (215)
T ss_pred CCCEEEEcCCc---------ccccHHHHHhcCcCcEEEEE
Confidence 89999975321 12334566789999998754
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.38 E-value=4.3e-12 Score=118.42 Aligned_cols=105 Identities=32% Similarity=0.385 Sum_probs=86.5
Q ss_pred CCCCCEEEEECCcccHHHHHHHHc-CC-CeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-CcccEEEEc
Q 016351 76 HFQGKTVLDVGTGSGILAIWSAQA-GA-RKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIISE 151 (391)
Q Consensus 76 ~~~~~~VLDlGcGtG~l~~~~a~~-g~-~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~-~~~D~Ivse 151 (391)
..++.+|||||||+|..++.+++. +. .+|+++|++ .|++.|+++....++. +++++.+|+.+++++ +.||+|+++
T Consensus 75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~-~v~~~~~d~~~l~~~~~~fD~Vi~~ 153 (272)
T PRK11873 75 LKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYT-NVEFRLGEIEALPVADNSVDVIISN 153 (272)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCC-CEEEEEcchhhCCCCCCceeEEEEc
Confidence 356789999999999988877765 54 379999999 9999999999988885 489999999988765 689999986
Q ss_pred cccccccCcchHHHHHHHHhccccCCeEEEccc
Q 016351 152 WMGYFLLRESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 152 ~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~ 184 (391)
.+.+.. .....+++++.++|+|||++++..
T Consensus 154 ~v~~~~---~d~~~~l~~~~r~LkpGG~l~i~~ 183 (272)
T PRK11873 154 CVINLS---PDKERVFKEAFRVLKPGGRFAISD 183 (272)
T ss_pred CcccCC---CCHHHHHHHHHHHcCCCcEEEEEE
Confidence 543332 245678999999999999998754
|
|
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=3e-12 Score=118.52 Aligned_cols=105 Identities=17% Similarity=0.232 Sum_probs=83.2
Q ss_pred HHhcCCCCCCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccE
Q 016351 70 IFQNKHHFQGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDV 147 (391)
Q Consensus 70 i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~~D~ 147 (391)
+...+...++.+|||||||+|.++..+++. +..+|+|+|+| .|++.|+++. .+++++.+|+.++..+++||+
T Consensus 23 ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~------~~~~~~~~d~~~~~~~~~fD~ 96 (258)
T PRK01683 23 LLARVPLENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL------PDCQFVEADIASWQPPQALDL 96 (258)
T ss_pred HHhhCCCcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC------CCCeEEECchhccCCCCCccE
Confidence 444444556789999999999999988876 34589999999 8999998764 238999999988765579999
Q ss_pred EEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 148 IISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 148 Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
|+|....+.+ .+...++..+.+.|+|||.++..
T Consensus 97 v~~~~~l~~~---~d~~~~l~~~~~~LkpgG~~~~~ 129 (258)
T PRK01683 97 IFANASLQWL---PDHLELFPRLVSLLAPGGVLAVQ 129 (258)
T ss_pred EEEccChhhC---CCHHHHHHHHHHhcCCCcEEEEE
Confidence 9996543333 34567899999999999998875
|
|
| >KOG1271 consensus Methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.1e-12 Score=108.41 Aligned_cols=110 Identities=18% Similarity=0.286 Sum_probs=89.0
Q ss_pred CEEEEECCcccHHHHHHHHcCCC-eEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC-CCCcccEEEE----cc
Q 016351 80 KTVLDVGTGSGILAIWSAQAGAR-KVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV-LPEKVDVIIS----EW 152 (391)
Q Consensus 80 ~~VLDlGcGtG~l~~~~a~~g~~-~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~-~~~~~D~Ivs----e~ 152 (391)
.+|||+|||.|.+...+++.|.. ..+|||.| .+++.|+.+++++++++.|+|.+.|+.+.. .+++||+|+- +.
T Consensus 69 ~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~DA 148 (227)
T KOG1271|consen 69 DRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKGTLDA 148 (227)
T ss_pred cceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEeecCceee
Confidence 38999999999999999999765 49999999 899999999999999999999999998854 3489999986 22
Q ss_pred cccccc-CcchHHHHHHHHhccccCCeEEEcccceeEE
Q 016351 153 MGYFLL-RESMFDSVICARDRWLKPTGVMYPSHARMWV 189 (391)
Q Consensus 153 ~~~~~~-~e~~l~~~l~~~~~~L~~gG~ii~~~~~~~~ 189 (391)
+.-... ....+..++..+.++|+|||++++..+++..
T Consensus 149 isLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~T~ 186 (227)
T KOG1271|consen 149 ISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNFTK 186 (227)
T ss_pred eecCCCCcccceeeehhhHhhccCCCcEEEEEecCccH
Confidence 221111 1123466788899999999999988777654
|
|
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=8.4e-12 Score=117.87 Aligned_cols=105 Identities=26% Similarity=0.318 Sum_probs=83.7
Q ss_pred CEEEEECCcccHHHHHHHHcC-CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEccccccc
Q 016351 80 KTVLDVGTGSGILAIWSAQAG-ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMGYFL 157 (391)
Q Consensus 80 ~~VLDlGcGtG~l~~~~a~~g-~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~~D~Ivse~~~~~~ 157 (391)
.+|||+|||+|.+++.+++.. ..+|+++|+| .+++.|+++++.+++.++|+++++|+.+...+++||+|+|++. |..
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~~~~fDlIvsNPP-yi~ 213 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALPGRRYDLIVSNPP-YVD 213 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCCCCCccEEEECCC-CCC
Confidence 689999999999999998873 4589999999 9999999999999998889999999866332368999999863 110
Q ss_pred -----------cCc------------chHHHHHHHHhccccCCeEEEcccc
Q 016351 158 -----------LRE------------SMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 158 -----------~~e------------~~l~~~l~~~~~~L~~gG~ii~~~~ 185 (391)
.++ .....++..+.++|+|||.++....
T Consensus 214 ~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g 264 (307)
T PRK11805 214 AEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVG 264 (307)
T ss_pred ccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 011 1245778888999999999986543
|
|
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=7.8e-12 Score=112.11 Aligned_cols=106 Identities=25% Similarity=0.230 Sum_probs=81.9
Q ss_pred HHHHhcCCCCCCCEEEEECCcccHHHHHHHHc-CC-CeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-C
Q 016351 68 NSIFQNKHHFQGKTVLDVGTGSGILAIWSAQA-GA-RKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-E 143 (391)
Q Consensus 68 ~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~-g~-~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~-~ 143 (391)
..+.+.+...++.+|||||||+|.++..+++. +. .+|+++|++ .+++.|+++++.+++.+ ++++++|......+ .
T Consensus 66 ~~~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~-v~~~~gd~~~~~~~~~ 144 (212)
T PRK13942 66 AIMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDN-VEVIVGDGTLGYEENA 144 (212)
T ss_pred HHHHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCC-eEEEECCcccCCCcCC
Confidence 34445555667899999999999999988876 32 489999999 99999999999988854 99999998765433 7
Q ss_pred cccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 144 KVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 144 ~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
+||+|++... . + .+...+.+.|+|||+++..
T Consensus 145 ~fD~I~~~~~---~--~----~~~~~l~~~LkpgG~lvi~ 175 (212)
T PRK13942 145 PYDRIYVTAA---G--P----DIPKPLIEQLKDGGIMVIP 175 (212)
T ss_pred CcCEEEECCC---c--c----cchHHHHHhhCCCcEEEEE
Confidence 8999998431 1 1 2233556689999998753
|
|
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.36 E-value=5.9e-12 Score=112.06 Aligned_cols=105 Identities=18% Similarity=0.255 Sum_probs=82.2
Q ss_pred CCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEccc-ccCC--CC-CcccEEEEc
Q 016351 78 QGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSV-EDIV--LP-EKVDVIISE 151 (391)
Q Consensus 78 ~~~~VLDlGcGtG~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~-~~~~--~~-~~~D~Ivse 151 (391)
++.+|||+|||+|.++..+++. ...+|+|+|+| .+++.|+++++.+++.+ ++++++|+ ..+. ++ +.||+|++.
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~-v~~~~~d~~~~l~~~~~~~~~D~V~~~ 118 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTN-LRLLCGDAVEVLLDMFPDGSLDRIYLN 118 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCC-EEEEecCHHHHHHHHcCccccceEEEE
Confidence 5678999999999999988876 34479999999 99999999999988854 99999999 6654 43 789999985
Q ss_pred ccccccc--Cc---chHHHHHHHHhccccCCeEEEcc
Q 016351 152 WMGYFLL--RE---SMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 152 ~~~~~~~--~e---~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
....... +. .....+++.+.++|+|||.+++.
T Consensus 119 ~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~ 155 (202)
T PRK00121 119 FPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFA 155 (202)
T ss_pred CCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEE
Confidence 3221111 00 12467899999999999999864
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.34 E-value=9.3e-12 Score=125.36 Aligned_cols=104 Identities=24% Similarity=0.222 Sum_probs=83.4
Q ss_pred CCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-CcccEEEEccc
Q 016351 76 HFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIISEWM 153 (391)
Q Consensus 76 ~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~-~~~D~Ivse~~ 153 (391)
..++.+|||||||+|.++..+++....+|+|+|+| .++..|+++.. +...+++++++|+.+.+++ ++||+|+|..+
T Consensus 264 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~--~~~~~v~~~~~d~~~~~~~~~~fD~I~s~~~ 341 (475)
T PLN02336 264 LKPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAI--GRKCSVEFEVADCTKKTYPDNSFDVIYSRDT 341 (475)
T ss_pred CCCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhh--cCCCceEEEEcCcccCCCCCCCEEEEEECCc
Confidence 34678999999999999988888633389999999 99999988765 4445699999999988766 68999999432
Q ss_pred cccccCcchHHHHHHHHhccccCCeEEEccc
Q 016351 154 GYFLLRESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 154 ~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~ 184 (391)
.. +-.+...++.++.++|+|||.+++..
T Consensus 342 l~---h~~d~~~~l~~~~r~LkpgG~l~i~~ 369 (475)
T PLN02336 342 IL---HIQDKPALFRSFFKWLKPGGKVLISD 369 (475)
T ss_pred cc---ccCCHHHHHHHHHHHcCCCeEEEEEE
Confidence 22 22356788999999999999998764
|
|
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=9.4e-12 Score=125.30 Aligned_cols=107 Identities=20% Similarity=0.347 Sum_probs=83.5
Q ss_pred CCCCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC--CC-CcccEEEE
Q 016351 76 HFQGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV--LP-EKVDVIIS 150 (391)
Q Consensus 76 ~~~~~~VLDlGcGtG~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~--~~-~~~D~Ivs 150 (391)
..++.+|||+|||+|.++..+++. ...+|+|+|+| .|++.|+++....+. +++++++|+.+++ ++ ++||+|++
T Consensus 416 ~~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g~--~ie~I~gDa~dLp~~fedeSFDvVVs 493 (677)
T PRK06922 416 YIKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEGR--SWNVIKGDAINLSSSFEKESVDTIVY 493 (677)
T ss_pred hcCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCC--CeEEEEcchHhCccccCCCCEEEEEE
Confidence 346789999999999998887765 34589999999 899999988766553 3889999998875 33 78999998
Q ss_pred cccccccc----------CcchHHHHHHHHhccccCCeEEEccc
Q 016351 151 EWMGYFLL----------RESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 151 e~~~~~~~----------~e~~l~~~l~~~~~~L~~gG~ii~~~ 184 (391)
..+.+.+. ....+..+++++.++|||||.+++..
T Consensus 494 n~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D 537 (677)
T PRK06922 494 SSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRD 537 (677)
T ss_pred chHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEe
Confidence 65433221 12356788999999999999998754
|
|
| >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.4e-11 Score=111.27 Aligned_cols=104 Identities=23% Similarity=0.282 Sum_probs=83.0
Q ss_pred CCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEcccc
Q 016351 76 HFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMG 154 (391)
Q Consensus 76 ~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~~D~Ivse~~~ 154 (391)
..++.+|||+|||+|.++..+++.+. +|+|+|++ .|+..|+++...++..+++++.++|+.++. ++||+|++..+.
T Consensus 53 ~~~~~~vLDiGcG~G~~~~~la~~~~-~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~fD~ii~~~~l 129 (219)
T TIGR02021 53 PLKGKRVLDAGCGTGLLSIELAKRGA-IVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLC--GEFDIVVCMDVL 129 (219)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCC--CCcCEEEEhhHH
Confidence 34678999999999999999998876 89999999 999999999988887667999999998875 789999983322
Q ss_pred ccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 155 YFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 155 ~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
+... ...+..++..+.+++++++++...
T Consensus 130 ~~~~-~~~~~~~l~~i~~~~~~~~~i~~~ 157 (219)
T TIGR02021 130 IHYP-ASDMAKALGHLASLTKERVIFTFA 157 (219)
T ss_pred HhCC-HHHHHHHHHHHHHHhCCCEEEEEC
Confidence 2222 234667788888888877766543
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM. |
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.2e-11 Score=118.34 Aligned_cols=103 Identities=23% Similarity=0.238 Sum_probs=82.5
Q ss_pred CCCEEEEECCcccHHHHHHHHcCC-CeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEccccc
Q 016351 78 QGKTVLDVGTGSGILAIWSAQAGA-RKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMGY 155 (391)
Q Consensus 78 ~~~~VLDlGcGtG~l~~~~a~~g~-~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~~D~Ivse~~~~ 155 (391)
...+|||+|||+|.++..+++.+. .+|+++|++ .+++.|+++++.+++. .+++..|+.+. .+++||+|+|++..+
T Consensus 196 ~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~--~~~~~~D~~~~-~~~~fDlIvsNPPFH 272 (342)
T PRK09489 196 TKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLE--GEVFASNVFSD-IKGRFDMIISNPPFH 272 (342)
T ss_pred CCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC--CEEEEcccccc-cCCCccEEEECCCcc
Confidence 345899999999999999998743 489999999 8999999999999886 57788887653 357899999987533
Q ss_pred cccC--cchHHHHHHHHhccccCCeEEEcc
Q 016351 156 FLLR--ESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 156 ~~~~--e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
.... ......++..+.++|+|||.+++.
T Consensus 273 ~g~~~~~~~~~~~i~~a~~~LkpgG~L~iV 302 (342)
T PRK09489 273 DGIQTSLDAAQTLIRGAVRHLNSGGELRIV 302 (342)
T ss_pred CCccccHHHHHHHHHHHHHhcCcCCEEEEE
Confidence 2211 134678899999999999998764
|
|
| >TIGR00536 hemK_fam HemK family putative methylases | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.8e-11 Score=114.86 Aligned_cols=107 Identities=27% Similarity=0.349 Sum_probs=84.8
Q ss_pred CEEEEECCcccHHHHHHHHcCC-CeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEccccccc
Q 016351 80 KTVLDVGTGSGILAIWSAQAGA-RKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMGYFL 157 (391)
Q Consensus 80 ~~VLDlGcGtG~l~~~~a~~g~-~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~~D~Ivse~~~~~~ 157 (391)
.+|||+|||+|.+++.+++... .+|+|+|+| .+++.|+++++.+++.++++++++|+.+.....+||+|+|++. +..
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~~~~~fDlIvsNPP-yi~ 194 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPLAGQKIDIIVSNPP-YID 194 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccCcCCCccEEEECCC-CCC
Confidence 6899999999999999998743 489999999 8999999999999998779999999876422248999999752 111
Q ss_pred -----------cCc------------chHHHHHHHHhccccCCeEEEccccee
Q 016351 158 -----------LRE------------SMFDSVICARDRWLKPTGVMYPSHARM 187 (391)
Q Consensus 158 -----------~~e------------~~l~~~l~~~~~~L~~gG~ii~~~~~~ 187 (391)
.++ .....++..+.++|+|||.+++.....
T Consensus 195 ~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~~ 247 (284)
T TIGR00536 195 EEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGNW 247 (284)
T ss_pred cchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECcc
Confidence 011 135577888889999999998765543
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. |
| >PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.4e-11 Score=119.91 Aligned_cols=111 Identities=23% Similarity=0.295 Sum_probs=88.8
Q ss_pred CCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCC-CcEEEEEcccccCC-----CCCcccEEEE
Q 016351 78 QGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQ-DVVEVIEGSVEDIV-----LPEKVDVIIS 150 (391)
Q Consensus 78 ~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~-~~v~~i~~d~~~~~-----~~~~~D~Ivs 150 (391)
++++|||+|||+|.+++.++..|+.+|++||+| .+++.|+++++.|++. ++++++++|+.++. ..++||+|++
T Consensus 220 ~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVil 299 (396)
T PRK15128 220 ENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVM 299 (396)
T ss_pred CCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEEE
Confidence 578999999999999998887788899999999 9999999999999996 46999999998752 1358999999
Q ss_pred ccccccccCc-------chHHHHHHHHhccccCCeEEEcccceeEE
Q 016351 151 EWMGYFLLRE-------SMFDSVICARDRWLKPTGVMYPSHARMWV 189 (391)
Q Consensus 151 e~~~~~~~~e-------~~l~~~l~~~~~~L~~gG~ii~~~~~~~~ 189 (391)
++.. +.... .....++....++|+|||.++.+.++.++
T Consensus 300 DPP~-f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs~~~ 344 (396)
T PRK15128 300 DPPK-FVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCSGLM 344 (396)
T ss_pred CCCC-CCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCcC
Confidence 9853 22221 12445556678999999999977665443
|
|
| >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.32 E-value=3.8e-13 Score=105.57 Aligned_cols=94 Identities=24% Similarity=0.334 Sum_probs=60.0
Q ss_pred EEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccC---CCCCcccEEEEccccccc
Q 016351 83 LDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDI---VLPEKVDVIISEWMGYFL 157 (391)
Q Consensus 83 LDlGcGtG~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~---~~~~~~D~Ivse~~~~~~ 157 (391)
||||||+|.++..+++. ...+++++|+| .|++.|+++.......+ ...+..+..+. ..+++||+|++..+.+++
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l 79 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDN-FERLRFDVLDLFDYDPPESFDLVVASNVLHHL 79 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT----EEEEE--SSS---CCC----SEEEEE-TTS--
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcc-eeEEEeecCChhhcccccccceehhhhhHhhh
Confidence 79999999999888887 33489999999 99989988888876543 34444433332 223699999985443443
Q ss_pred cCcchHHHHHHHHhccccCCeEE
Q 016351 158 LRESMFDSVICARDRWLKPTGVM 180 (391)
Q Consensus 158 ~~e~~l~~~l~~~~~~L~~gG~i 180 (391)
..+..+++.+.++|+|||++
T Consensus 80 ---~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 80 ---EDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp ---S-HHHHHHHHTTT-TSS-EE
T ss_pred ---hhHHHHHHHHHHHcCCCCCC
Confidence 46789999999999999975
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. |
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.32 E-value=3.3e-11 Score=102.98 Aligned_cols=110 Identities=22% Similarity=0.294 Sum_probs=90.1
Q ss_pred HHHhcCCCCCCCEEEEECCcccHHHHHHHHcC-CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-Ccc
Q 016351 69 SIFQNKHHFQGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKV 145 (391)
Q Consensus 69 ~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g-~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~-~~~ 145 (391)
.....+...++.+++|||||||.+++.++..+ ..+|+|||.+ ++++..++|+++.+.++ ++++.++..+.-.. .++
T Consensus 25 l~ls~L~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n-~~vv~g~Ap~~L~~~~~~ 103 (187)
T COG2242 25 LTLSKLRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDN-LEVVEGDAPEALPDLPSP 103 (187)
T ss_pred HHHHhhCCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCc-EEEEeccchHhhcCCCCC
Confidence 34455667788999999999999999999764 4589999999 99999999999999765 99999999886333 379
Q ss_pred cEEEEccccccccCcchHHHHHHHHhccccCCeEEEcccce
Q 016351 146 DVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHAR 186 (391)
Q Consensus 146 D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~~~ 186 (391)
|.|+. +-. ..++.+++.+...|+|||+++....+
T Consensus 104 daiFI---GGg----~~i~~ile~~~~~l~~ggrlV~nait 137 (187)
T COG2242 104 DAIFI---GGG----GNIEEILEAAWERLKPGGRLVANAIT 137 (187)
T ss_pred CEEEE---CCC----CCHHHHHHHHHHHcCcCCeEEEEeec
Confidence 99995 322 35778999999999999999966544
|
|
| >PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.31 E-value=2e-11 Score=111.77 Aligned_cols=112 Identities=18% Similarity=0.192 Sum_probs=82.3
Q ss_pred HHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccE
Q 016351 69 SIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDV 147 (391)
Q Consensus 69 ~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~~D~ 147 (391)
.+...+..+++++|||||||.|..+..++++|++.|+|+|.+ ......+...+..+....+.++..-+++++..+.||+
T Consensus 106 rl~p~l~~L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~~~~FDt 185 (315)
T PF08003_consen 106 RLLPHLPDLKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPNLGAFDT 185 (315)
T ss_pred HHHhhhCCcCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccccCCcCE
Confidence 455666678999999999999999999999999999999999 5443333333333334445666567777765689999
Q ss_pred EEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 148 IISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 148 Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
|+|-.+.|+ ....-..+..++..|++||.+|..
T Consensus 186 VF~MGVLYH---rr~Pl~~L~~Lk~~L~~gGeLvLE 218 (315)
T PF08003_consen 186 VFSMGVLYH---RRSPLDHLKQLKDSLRPGGELVLE 218 (315)
T ss_pred EEEeeehhc---cCCHHHHHHHHHHhhCCCCEEEEE
Confidence 999444333 234556788899999999998744
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification |
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=3.5e-11 Score=109.64 Aligned_cols=116 Identities=22% Similarity=0.251 Sum_probs=88.7
Q ss_pred HHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcC--CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC
Q 016351 65 AYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAG--ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL 141 (391)
Q Consensus 65 ~~~~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g--~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~ 141 (391)
.+++.+...+...++.+|||+|||+|.++..+++.. ..+|+++|++ .+++.++++... ...+++++..|+.++++
T Consensus 6 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~--~~~~~~~~~~d~~~~~~ 83 (241)
T PRK08317 6 RYRARTFELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAG--LGPNVEFVRGDADGLPF 83 (241)
T ss_pred HHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhC--CCCceEEEecccccCCC
Confidence 344455555666678899999999999999888763 3589999999 889999887332 23459999999988765
Q ss_pred C-CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcccc
Q 016351 142 P-EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 142 ~-~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~~ 185 (391)
+ ++||+|++..+... ......+++.+.++|+|||.++....
T Consensus 84 ~~~~~D~v~~~~~~~~---~~~~~~~l~~~~~~L~~gG~l~~~~~ 125 (241)
T PRK08317 84 PDGSFDAVRSDRVLQH---LEDPARALAEIARVLRPGGRVVVLDT 125 (241)
T ss_pred CCCCceEEEEechhhc---cCCHHHHHHHHHHHhcCCcEEEEEec
Confidence 5 78999998543222 23467789999999999999886643
|
|
| >TIGR01177 conserved hypothetical protein TIGR01177 | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.2e-11 Score=116.69 Aligned_cols=116 Identities=23% Similarity=0.240 Sum_probs=91.6
Q ss_pred HHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-C
Q 016351 66 YFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-E 143 (391)
Q Consensus 66 ~~~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~-~ 143 (391)
...++.......++.+|||+|||+|.+++.++..++ +|+|+|++ .|+..|+++++.+++.+ ++++++|+.+++.+ +
T Consensus 170 la~~~~~l~~~~~g~~vLDp~cGtG~~lieaa~~~~-~v~g~Di~~~~~~~a~~nl~~~g~~~-i~~~~~D~~~l~~~~~ 247 (329)
T TIGR01177 170 LARAMVNLARVTEGDRVLDPFCGTGGFLIEAGLMGA-KVIGCDIDWKMVAGARINLEHYGIED-FFVKRGDATKLPLSSE 247 (329)
T ss_pred HHHHHHHHhCCCCcCEEEECCCCCCHHHHHHHHhCC-eEEEEcCCHHHHHHHHHHHHHhCCCC-CeEEecchhcCCcccC
Confidence 334444444456778999999999999988888776 79999999 99999999999999987 89999999998765 7
Q ss_pred cccEEEEcccccc---ccCc---chHHHHHHHHhccccCCeEEEcc
Q 016351 144 KVDVIISEWMGYF---LLRE---SMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 144 ~~D~Ivse~~~~~---~~~e---~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
+||+|++++.-.. ...+ .....++..+.+.|+|||.++..
T Consensus 248 ~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~ 293 (329)
T TIGR01177 248 SVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYA 293 (329)
T ss_pred CCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEE
Confidence 8999999864211 1111 23577899999999999988743
|
This family is found exclusively in the Archaea. |
| >KOG4300 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.3e-11 Score=105.70 Aligned_cols=100 Identities=20% Similarity=0.227 Sum_probs=80.8
Q ss_pred CEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEE-EEEcccccCC-CC-CcccEEEEccccc
Q 016351 80 KTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVE-VIEGSVEDIV-LP-EKVDVIISEWMGY 155 (391)
Q Consensus 80 ~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~-~i~~d~~~~~-~~-~~~D~Ivse~~~~ 155 (391)
..||+||||||..-.+.-.....+|+.+|.+ .|-+.|.+.++++...+ ++ |+.++.++++ ++ +++|+||+-.
T Consensus 78 ~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~-~~~fvva~ge~l~~l~d~s~DtVV~Tl--- 153 (252)
T KOG4300|consen 78 GDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQ-VERFVVADGENLPQLADGSYDTVVCTL--- 153 (252)
T ss_pred cceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccCcc-eEEEEeechhcCcccccCCeeeEEEEE---
Confidence 4589999999987665554434489999999 89999999998885544 66 9999999987 44 8999999843
Q ss_pred cccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 156 FLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 156 ~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
.+....+....|.+.+|+|+|||++++-
T Consensus 154 vLCSve~~~k~L~e~~rlLRpgG~iifi 181 (252)
T KOG4300|consen 154 VLCSVEDPVKQLNEVRRLLRPGGRIIFI 181 (252)
T ss_pred EEeccCCHHHHHHHHHHhcCCCcEEEEE
Confidence 3555556788899999999999998854
|
|
| >PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=3.5e-11 Score=106.24 Aligned_cols=104 Identities=13% Similarity=0.185 Sum_probs=79.9
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC--CCCcccEEEEccc
Q 016351 77 FQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV--LPEKVDVIISEWM 153 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~--~~~~~D~Ivse~~ 153 (391)
.++.+|||+|||+|.+++.++..++.+|+++|.+ .+++.|+++++.+++. +++++++|+.+.. ..++||+|++++.
T Consensus 52 ~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~~-~v~~~~~D~~~~l~~~~~~fDlV~~DPP 130 (199)
T PRK10909 52 IVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKAG-NARVVNTNALSFLAQPGTPHNVVFVDPP 130 (199)
T ss_pred cCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCC-cEEEEEchHHHHHhhcCCCceEEEECCC
Confidence 3567999999999999997666677799999999 8999999999999986 4999999987742 1257999999985
Q ss_pred cccccCcchHHHHHHHHh--ccccCCeEEEcccc
Q 016351 154 GYFLLRESMFDSVICARD--RWLKPTGVMYPSHA 185 (391)
Q Consensus 154 ~~~~~~e~~l~~~l~~~~--~~L~~gG~ii~~~~ 185 (391)
|. .+....+++.+. .+|+|+++++.+..
T Consensus 131 -y~---~g~~~~~l~~l~~~~~l~~~~iv~ve~~ 160 (199)
T PRK10909 131 -FR---KGLLEETINLLEDNGWLADEALIYVESE 160 (199)
T ss_pred -CC---CChHHHHHHHHHHCCCcCCCcEEEEEec
Confidence 21 123344444443 45889998886644
|
|
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.2e-11 Score=108.89 Aligned_cols=114 Identities=18% Similarity=0.114 Sum_probs=82.1
Q ss_pred HHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCC--------------CC
Q 016351 63 MDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNL--------------QD 127 (391)
Q Consensus 63 ~~~~~~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~--------------~~ 127 (391)
+..+.+.+... ...++.+|||+|||.|..+..+|+.|. +|+|||+| .+++.+.+ ++++ ..
T Consensus 20 ~~~l~~~~~~l-~~~~~~rvLd~GCG~G~da~~LA~~G~-~V~gvD~S~~Ai~~~~~---~~~~~~~~~~~~~~~~~~~~ 94 (213)
T TIGR03840 20 NPLLVKHWPAL-GLPAGARVFVPLCGKSLDLAWLAEQGH-RVLGVELSEIAVEQFFA---ENGLTPTVTQQGEFTRYRAG 94 (213)
T ss_pred CHHHHHHHHhh-CCCCCCeEEEeCCCchhHHHHHHhCCC-eEEEEeCCHHHHHHHHH---HcCCCcceeccccceeeecC
Confidence 34444444332 123567999999999999999999999 69999999 77776533 2222 23
Q ss_pred cEEEEEcccccCCCC--CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEc
Q 016351 128 VVEVIEGSVEDIVLP--EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 128 ~v~~i~~d~~~~~~~--~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~ 182 (391)
+|+++++|+.++... ++||.|+...+...+ .......++..+.++|+|||.++.
T Consensus 95 ~v~~~~~D~~~~~~~~~~~fD~i~D~~~~~~l-~~~~R~~~~~~l~~lLkpgG~~ll 150 (213)
T TIGR03840 95 NIEIFCGDFFALTAADLGPVDAVYDRAALIAL-PEEMRQRYAAHLLALLPPGARQLL 150 (213)
T ss_pred ceEEEEccCCCCCcccCCCcCEEEechhhccC-CHHHHHHHHHHHHHHcCCCCeEEE
Confidence 589999999987642 679999874432333 334567789999999999997654
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=4.4e-11 Score=108.97 Aligned_cols=110 Identities=30% Similarity=0.398 Sum_probs=86.8
Q ss_pred HHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC--CCCc
Q 016351 68 NSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV--LPEK 144 (391)
Q Consensus 68 ~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~--~~~~ 144 (391)
+.+.......++.+|||||||+|.++..+++.+. +|+++|++ .++..|++++...+.. ++++..++.++. ..++
T Consensus 38 ~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 114 (233)
T PRK05134 38 NYIREHAGGLFGKRVLDVGCGGGILSESMARLGA-DVTGIDASEENIEVARLHALESGLK--IDYRQTTAEELAAEHPGQ 114 (233)
T ss_pred HHHHHhccCCCCCeEEEeCCCCCHHHHHHHHcCC-eEEEEcCCHHHHHHHHHHHHHcCCc--eEEEecCHHHhhhhcCCC
Confidence 3444444455778999999999999999998876 79999999 8999999988877663 888888888764 3379
Q ss_pred ccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 145 VDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 145 ~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
||+|++..+ +.+......++..+.++|+|||.+++.
T Consensus 115 fD~Ii~~~~---l~~~~~~~~~l~~~~~~L~~gG~l~v~ 150 (233)
T PRK05134 115 FDVVTCMEM---LEHVPDPASFVRACAKLVKPGGLVFFS 150 (233)
T ss_pred ccEEEEhhH---hhccCCHHHHHHHHHHHcCCCcEEEEE
Confidence 999998432 223335677899999999999998865
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.2e-11 Score=129.45 Aligned_cols=108 Identities=20% Similarity=0.260 Sum_probs=88.6
Q ss_pred CCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCC-CcEEEEEcccccCC--CCCcccEEEEccc
Q 016351 78 QGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQ-DVVEVIEGSVEDIV--LPEKVDVIISEWM 153 (391)
Q Consensus 78 ~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~-~~v~~i~~d~~~~~--~~~~~D~Ivse~~ 153 (391)
++++|||+|||+|.+++.+++.|+++|++||+| .+++.|+++++.|++. ++++++++|+.++. ..++||+||+++.
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDPP 617 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDPP 617 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECCC
Confidence 578999999999999999999998889999999 9999999999999997 57999999987742 2468999999874
Q ss_pred ccccc--------CcchHHHHHHHHhccccCCeEEEcccc
Q 016351 154 GYFLL--------RESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 154 ~~~~~--------~e~~l~~~l~~~~~~L~~gG~ii~~~~ 185 (391)
..... .......++..+.++|+|||+++.+.+
T Consensus 618 ~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~ 657 (702)
T PRK11783 618 TFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNN 657 (702)
T ss_pred CCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 32111 112345677888899999999887644
|
|
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=3e-11 Score=117.57 Aligned_cols=107 Identities=26% Similarity=0.302 Sum_probs=83.8
Q ss_pred HHhcCCCCCCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccE
Q 016351 70 IFQNKHHFQGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDV 147 (391)
Q Consensus 70 i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~~D~ 147 (391)
+.+.+...++.+|||||||+|.++..+++. |. +|+|+|+| .+++.|+++++ ++. +++...|..++ +++||.
T Consensus 159 l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~g~-~V~giDlS~~~l~~A~~~~~--~l~--v~~~~~D~~~l--~~~fD~ 231 (383)
T PRK11705 159 ICRKLQLKPGMRVLDIGCGWGGLARYAAEHYGV-SVVGVTISAEQQKLAQERCA--GLP--VEIRLQDYRDL--NGQFDR 231 (383)
T ss_pred HHHHhCCCCCCEEEEeCCCccHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhc--cCe--EEEEECchhhc--CCCCCE
Confidence 444455567889999999999999999886 55 89999999 99999998874 332 88899998776 478999
Q ss_pred EEEccccccccCcchHHHHHHHHhccccCCeEEEccc
Q 016351 148 IISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 148 Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~ 184 (391)
|++..+..... ...+..+++.+.++|||||.++...
T Consensus 232 Ivs~~~~ehvg-~~~~~~~l~~i~r~LkpGG~lvl~~ 267 (383)
T PRK11705 232 IVSVGMFEHVG-PKNYRTYFEVVRRCLKPDGLFLLHT 267 (383)
T ss_pred EEEeCchhhCC-hHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 99854333222 2246788999999999999998753
|
|
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Probab=99.28 E-value=4.4e-11 Score=113.55 Aligned_cols=116 Identities=12% Similarity=0.061 Sum_probs=89.8
Q ss_pred HHHHhcCCCCCCCEEEEECCcccHHHHHHHHcC-CCeEEEEechHHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCccc
Q 016351 68 NSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVD 146 (391)
Q Consensus 68 ~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g-~~~V~avD~s~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~~D 146 (391)
+.+.+.....+..+|||||||+|.++..+++.. ..+++++|...+++.++++++..++.++|+++.+|+.+..++ .+|
T Consensus 139 ~~l~~~~~~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~-~~D 217 (306)
T TIGR02716 139 QLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKESYP-EAD 217 (306)
T ss_pred HHHHHHcCCCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEecHHHHHHHHHHHHhCCccceEEEEecCccCCCCC-CCC
Confidence 334444444566899999999999999999874 347999998888999999999999998999999999875555 479
Q ss_pred EEEEccccccccCcchHHHHHHHHhccccCCeEEEcccc
Q 016351 147 VIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 147 ~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~~ 185 (391)
+|++..+.+... +.....+++.+.+.|+|||++++...
T Consensus 218 ~v~~~~~lh~~~-~~~~~~il~~~~~~L~pgG~l~i~d~ 255 (306)
T TIGR02716 218 AVLFCRILYSAN-EQLSTIMCKKAFDAMRSGGRLLILDM 255 (306)
T ss_pred EEEeEhhhhcCC-hHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 987533323222 22346789999999999999987653
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. |
| >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.1e-11 Score=105.88 Aligned_cols=105 Identities=25% Similarity=0.258 Sum_probs=74.7
Q ss_pred HHHHHHhcCC-CCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC-CC
Q 016351 66 YFNSIFQNKH-HFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV-LP 142 (391)
Q Consensus 66 ~~~~i~~~~~-~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~-~~ 142 (391)
+.+.+.+..+ ..++.+|||||||+|.++..+++.|. +|+|+|++ .+++. .. +....-+..... .+
T Consensus 9 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~g~D~~~~~~~~----------~~-~~~~~~~~~~~~~~~ 76 (161)
T PF13489_consen 9 YADLLERLLPRLKPGKRVLDIGCGTGSFLRALAKRGF-EVTGVDISPQMIEK----------RN-VVFDNFDAQDPPFPD 76 (161)
T ss_dssp HHHHHHHHHTCTTTTSEEEEESSTTSHHHHHHHHTTS-EEEEEESSHHHHHH----------TT-SEEEEEECHTHHCHS
T ss_pred HHHHHHHHhcccCCCCEEEEEcCCCCHHHHHHHHhCC-EEEEEECCHHHHhh----------hh-hhhhhhhhhhhhccc
Confidence 3344444332 45678999999999999999999988 89999999 77766 11 233332222322 23
Q ss_pred CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcccc
Q 016351 143 EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 143 ~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~~ 185 (391)
++||+|+|..+.+.+ .++..++..+.++|||||.+++...
T Consensus 77 ~~fD~i~~~~~l~~~---~d~~~~l~~l~~~LkpgG~l~~~~~ 116 (161)
T PF13489_consen 77 GSFDLIICNDVLEHL---PDPEEFLKELSRLLKPGGYLVISDP 116 (161)
T ss_dssp SSEEEEEEESSGGGS---SHHHHHHHHHHHCEEEEEEEEEEEE
T ss_pred cchhhHhhHHHHhhc---ccHHHHHHHHHHhcCCCCEEEEEEc
Confidence 899999995433333 3578899999999999999986644
|
... |
| >COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.28 E-value=3.8e-11 Score=110.15 Aligned_cols=114 Identities=27% Similarity=0.328 Sum_probs=88.3
Q ss_pred HHHHhcCCCCCCCEEEEECCcccHHHHHHHHcC-CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcc
Q 016351 68 NSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKV 145 (391)
Q Consensus 68 ~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g-~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~~ 145 (391)
+.+.+.++...+.+|||+|||.|.+++.+++.. ..+|+-+|.| ..++.|+++++.|++++. .++..|..+-. .++|
T Consensus 148 ~lLl~~l~~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~-~v~~s~~~~~v-~~kf 225 (300)
T COG2813 148 RLLLETLPPDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENT-EVWASNLYEPV-EGKF 225 (300)
T ss_pred HHHHHhCCccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCcc-EEEEecccccc-cccc
Confidence 445566665556699999999999999999984 5689999999 889999999999999874 67777765532 3599
Q ss_pred cEEEEccccccccCc--chHHHHHHHHhccccCCeEEEcc
Q 016351 146 DVIISEWMGYFLLRE--SMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 146 D~Ivse~~~~~~~~e--~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
|+|||++..+-.... ..-..++....+.|++||.+.+.
T Consensus 226 d~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iV 265 (300)
T COG2813 226 DLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIV 265 (300)
T ss_pred cEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEE
Confidence 999999854432211 11247889999999999987654
|
|
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=4.8e-11 Score=104.81 Aligned_cols=106 Identities=33% Similarity=0.400 Sum_probs=83.3
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCc-EEEEEcccccCCCCCcccEEEEcccc
Q 016351 77 FQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDV-VEVIEGSVEDIVLPEKVDVIISEWMG 154 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~-v~~i~~d~~~~~~~~~~D~Ivse~~~ 154 (391)
.++++|||+|||+|.++..+++.+. +|+++|.+ .+++.+++++..+++.++ +.++++|+.+....++||+|+++...
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~vi~n~p~ 100 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKNGK-KVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFRGDKFDVILFNPPY 100 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhhcc-eEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccccccCceEEEECCCc
Confidence 4668999999999999999998864 89999999 899999999999888665 88999998774433689999986532
Q ss_pred ccc------------------cCcchHHHHHHHHhccccCCeEEEcc
Q 016351 155 YFL------------------LRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 155 ~~~------------------~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
... .....+..++.++.++|+|||.+++.
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~ 147 (188)
T PRK14968 101 LPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLL 147 (188)
T ss_pred CCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 110 00122566789999999999988754
|
|
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=7.7e-11 Score=104.48 Aligned_cols=109 Identities=21% Similarity=0.306 Sum_probs=83.7
Q ss_pred HHHhcCCCCCCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccC-C-CCCc
Q 016351 69 SIFQNKHHFQGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDI-V-LPEK 144 (391)
Q Consensus 69 ~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~-~-~~~~ 144 (391)
.+...+...++.+|||+|||+|.++..+++. ...+|+++|++ .+++.|+++++.+++.+ ++++.+|+.+. . ....
T Consensus 31 ~l~~~l~~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~-v~~~~~d~~~~~~~~~~~ 109 (196)
T PRK07402 31 LLISQLRLEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKN-VEVIEGSAPECLAQLAPA 109 (196)
T ss_pred HHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCC-eEEEECchHHHHhhCCCC
Confidence 3444455557789999999999999998875 33589999999 89999999999988854 99999998652 1 2245
Q ss_pred ccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcccc
Q 016351 145 VDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 145 ~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~~ 185 (391)
+|.++.+. ...+..++..+.++|+|||.++....
T Consensus 110 ~d~v~~~~-------~~~~~~~l~~~~~~LkpgG~li~~~~ 143 (196)
T PRK07402 110 PDRVCIEG-------GRPIKEILQAVWQYLKPGGRLVATAS 143 (196)
T ss_pred CCEEEEEC-------CcCHHHHHHHHHHhcCCCeEEEEEee
Confidence 67776532 12456789999999999999886643
|
|
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.28 E-value=7.4e-11 Score=106.74 Aligned_cols=120 Identities=31% Similarity=0.377 Sum_probs=92.3
Q ss_pred ChHhHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccc
Q 016351 59 DRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVE 137 (391)
Q Consensus 59 d~~r~~~~~~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~ 137 (391)
+..|.+...+.+.......++.+|||+|||+|.++..+++.+. +++++|.+ .++..+++++..++.. ++++...|+.
T Consensus 26 ~~~~~~~i~~~~~~~~~~~~~~~vLdlG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~-~~~~~~~d~~ 103 (224)
T TIGR01983 26 NPLRLDYIRDTIRKNKKPLFGLRVLDVGCGGGLLSEPLARLGA-NVTGIDASEENIEVAKLHAKKDPLL-KIEYRCTSVE 103 (224)
T ss_pred hHHHHHHHHHHHHhcccCCCCCeEEEECCCCCHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEeCCHH
Confidence 4556666666665432234578999999999999999988876 69999999 8999999988887763 3899999988
Q ss_pred cCCCC--CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 138 DIVLP--EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 138 ~~~~~--~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
++... ++||+|++..+ +.+......++..+.++|+|||.+++.
T Consensus 104 ~~~~~~~~~~D~i~~~~~---l~~~~~~~~~l~~~~~~L~~gG~l~i~ 148 (224)
T TIGR01983 104 DLAEKGAKSFDVVTCMEV---LEHVPDPQAFIRACAQLLKPGGILFFS 148 (224)
T ss_pred HhhcCCCCCccEEEehhH---HHhCCCHHHHHHHHHHhcCCCcEEEEE
Confidence 76533 78999998432 233345678899999999999998764
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. |
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.27 E-value=6.5e-11 Score=106.27 Aligned_cols=105 Identities=24% Similarity=0.206 Sum_probs=81.9
Q ss_pred HHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-Ccc
Q 016351 68 NSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKV 145 (391)
Q Consensus 68 ~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~-~~~ 145 (391)
..+...+...++.+|||+|||+|.++..+++.+. +|+++|.+ .+++.|+++++.+++.+ ++++.+|..+...+ ++|
T Consensus 68 ~~l~~~l~~~~~~~VLeiG~GsG~~t~~la~~~~-~v~~vd~~~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~~~f 145 (212)
T PRK00312 68 ARMTELLELKPGDRVLEIGTGSGYQAAVLAHLVR-RVFSVERIKTLQWEAKRRLKQLGLHN-VSVRHGDGWKGWPAYAPF 145 (212)
T ss_pred HHHHHhcCCCCCCEEEEECCCccHHHHHHHHHhC-EEEEEeCCHHHHHHHHHHHHHCCCCc-eEEEECCcccCCCcCCCc
Confidence 3444455556778999999999999998888754 89999999 99999999999998876 99999998664323 789
Q ss_pred cEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 146 DVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 146 D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
|+|++... ...+...+.+.|+|||.++..
T Consensus 146 D~I~~~~~---------~~~~~~~l~~~L~~gG~lv~~ 174 (212)
T PRK00312 146 DRILVTAA---------APEIPRALLEQLKEGGILVAP 174 (212)
T ss_pred CEEEEccC---------chhhhHHHHHhcCCCcEEEEE
Confidence 99998531 122344567889999998753
|
|
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=5.6e-11 Score=107.21 Aligned_cols=103 Identities=22% Similarity=0.211 Sum_probs=78.5
Q ss_pred cCCCCCCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccC----CCCCccc
Q 016351 73 NKHHFQGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDI----VLPEKVD 146 (391)
Q Consensus 73 ~~~~~~~~~VLDlGcGtG~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~----~~~~~~D 146 (391)
.+...++.+|||+|||+|.++..+++. +..+|+|+|++ .|++.+.++++.. .+|.++.+|+.+. .++++||
T Consensus 67 ~l~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~---~nv~~i~~D~~~~~~~~~l~~~~D 143 (226)
T PRK04266 67 NFPIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEER---KNIIPILADARKPERYAHVVEKVD 143 (226)
T ss_pred hCCCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhc---CCcEEEECCCCCcchhhhccccCC
Confidence 355667889999999999999999986 33489999999 8998887776643 3389999998752 2346799
Q ss_pred EEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 147 VIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 147 ~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
+|+++... ......++..+.++|||||.+++.
T Consensus 144 ~i~~d~~~-----p~~~~~~L~~~~r~LKpGG~lvI~ 175 (226)
T PRK04266 144 VIYQDVAQ-----PNQAEIAIDNAEFFLKDGGYLLLA 175 (226)
T ss_pred EEEECCCC-----hhHHHHHHHHHHHhcCCCcEEEEE
Confidence 99986421 112234678899999999998875
|
|
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=7.3e-11 Score=109.30 Aligned_cols=106 Identities=20% Similarity=0.156 Sum_probs=83.4
Q ss_pred CCCEEEEECCcccHH-HHHHH-Hc-CCCeEEEEech-HHHHHHHHHHHH-cCCCCcEEEEEcccccCCCC-CcccEEEEc
Q 016351 78 QGKTVLDVGTGSGIL-AIWSA-QA-GARKVYAVEAT-KMSDHARTLVKA-NNLQDVVEVIEGSVEDIVLP-EKVDVIISE 151 (391)
Q Consensus 78 ~~~~VLDlGcGtG~l-~~~~a-~~-g~~~V~avD~s-~~~~~a~~~~~~-~~~~~~v~~i~~d~~~~~~~-~~~D~Ivse 151 (391)
++++|+|||||.|.+ ++.++ ++ ...+++++|++ ++++.|++.++. .++.++|+|..+|+.+.... ++||+|++.
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~~ 202 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFLA 202 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEEe
Confidence 678999999998755 34444 33 34479999999 999999999965 88988999999999886433 789999997
Q ss_pred cccccccCcchHHHHHHHHhccccCCeEEEcccc
Q 016351 152 WMGYFLLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 152 ~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~~ 185 (391)
.+.++ . ......+++.+.+.|+|||.++...+
T Consensus 203 ALi~~-d-k~~k~~vL~~l~~~LkPGG~Lvlr~~ 234 (296)
T PLN03075 203 ALVGM-D-KEEKVKVIEHLGKHMAPGALLMLRSA 234 (296)
T ss_pred ccccc-c-cccHHHHHHHHHHhcCCCcEEEEecc
Confidence 43332 1 13567899999999999999997653
|
|
| >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=5.4e-11 Score=114.84 Aligned_cols=124 Identities=23% Similarity=0.231 Sum_probs=91.1
Q ss_pred cCChHhHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEc
Q 016351 57 LSDRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEG 134 (391)
Q Consensus 57 l~d~~r~~~~~~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~ 134 (391)
+-....++.+.+.+...+. ++.+|||+|||+|.+++.+++. ...+|+|+|+| .+++.|+++++.++. +++++++
T Consensus 232 LIPRpeTE~LVe~aL~~l~--~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~--rV~fi~g 307 (423)
T PRK14966 232 LIPRPETEHLVEAVLARLP--ENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGA--RVEFAHG 307 (423)
T ss_pred cCCCccHHHHHHHhhhccC--CCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC--cEEEEEc
Confidence 3344456666666655432 4568999999999999988875 45589999999 999999999998875 4999999
Q ss_pred ccccCCC--CCcccEEEEccccccccC--------------------c---chHHHHHHHHhccccCCeEEEcccc
Q 016351 135 SVEDIVL--PEKVDVIISEWMGYFLLR--------------------E---SMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 135 d~~~~~~--~~~~D~Ivse~~~~~~~~--------------------e---~~l~~~l~~~~~~L~~gG~ii~~~~ 185 (391)
|+.+... .++||+|+|++. +.... + .....++..+.++|+|||.++....
T Consensus 308 Dl~e~~l~~~~~FDLIVSNPP-YI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG 382 (423)
T PRK14966 308 SWFDTDMPSEGKWDIIVSNPP-YIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHG 382 (423)
T ss_pred chhccccccCCCccEEEECCC-CCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEEC
Confidence 9876433 357999999874 22110 0 1234667777889999999875443
|
|
| >COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.26 E-value=9.1e-11 Score=99.85 Aligned_cols=93 Identities=33% Similarity=0.348 Sum_probs=73.8
Q ss_pred cCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEc
Q 016351 73 NKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISE 151 (391)
Q Consensus 73 ~~~~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~~D~Ivse 151 (391)
.....+++.|+|+|||||.|++.++-.|+.+|+|+|++ ++++.+++++.+ +...|+|+.+|+.++. .++|.++.+
T Consensus 40 ~~g~l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~--l~g~v~f~~~dv~~~~--~~~dtvimN 115 (198)
T COG2263 40 LRGDLEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEE--LLGDVEFVVADVSDFR--GKFDTVIMN 115 (198)
T ss_pred HcCCcCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHh--hCCceEEEEcchhhcC--CccceEEEC
Confidence 33456889999999999999999999999999999999 999999999998 3345999999999986 679999998
Q ss_pred cccccccCcchHHHHHHH
Q 016351 152 WMGYFLLRESMFDSVICA 169 (391)
Q Consensus 152 ~~~~~~~~e~~l~~~l~~ 169 (391)
+..-..-...+.+-+..+
T Consensus 116 PPFG~~~rhaDr~Fl~~A 133 (198)
T COG2263 116 PPFGSQRRHADRPFLLKA 133 (198)
T ss_pred CCCccccccCCHHHHHHH
Confidence 642222222455544444
|
|
| >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.26 E-value=5.4e-11 Score=110.79 Aligned_cols=120 Identities=27% Similarity=0.357 Sum_probs=87.6
Q ss_pred hHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCC-CeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccC
Q 016351 62 RMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGA-RKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDI 139 (391)
Q Consensus 62 r~~~~~~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g~-~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~ 139 (391)
.++.+.+.+......... +|||||||||.+++.+++.+. ..|+|+|+| .+++.|+++++.+++ .++.++.+|..+-
T Consensus 95 dTe~Lve~~l~~~~~~~~-~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l-~~~~~~~~dlf~~ 172 (280)
T COG2890 95 DTELLVEAALALLLQLDK-RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGL-VRVLVVQSDLFEP 172 (280)
T ss_pred chHHHHHHHHHhhhhcCC-cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCC-ccEEEEeeecccc
Confidence 455555554422222222 799999999999999999864 389999999 999999999999999 5577777765552
Q ss_pred CCCCcccEEEEccccccccC-----------c------------chHHHHHHHHhccccCCeEEEcccc
Q 016351 140 VLPEKVDVIISEWMGYFLLR-----------E------------SMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 140 ~~~~~~D~Ivse~~~~~~~~-----------e------------~~l~~~l~~~~~~L~~gG~ii~~~~ 185 (391)
..++||+|||++. |.... | .....++..+.+.|+|||.++....
T Consensus 173 -~~~~fDlIVsNPP-Yip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g 239 (280)
T COG2890 173 -LRGKFDLIVSNPP-YIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIG 239 (280)
T ss_pred -cCCceeEEEeCCC-CCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEEC
Confidence 2369999999873 22211 1 1346777888899999998886654
|
|
| >PLN02585 magnesium protoporphyrin IX methyltransferase | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.2e-11 Score=116.70 Aligned_cols=100 Identities=24% Similarity=0.237 Sum_probs=73.6
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCC----CCcEEEEEcccccCCCCCcccEEEEc
Q 016351 77 FQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNL----QDVVEVIEGSVEDIVLPEKVDVIISE 151 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~----~~~v~~i~~d~~~~~~~~~~D~Ivse 151 (391)
.++.+|||||||+|.+++.+++.|. +|+|+|+| .|++.|+++.+..+. ...+++...|+.++ .++||+|+|.
T Consensus 143 ~~~~~VLDlGcGtG~~a~~la~~g~-~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l--~~~fD~Vv~~ 219 (315)
T PLN02585 143 LAGVTVCDAGCGTGSLAIPLALEGA-IVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL--SGKYDTVTCL 219 (315)
T ss_pred CCCCEEEEecCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc--CCCcCEEEEc
Confidence 3568999999999999999999886 79999999 999999999876522 13488999998765 4789999984
Q ss_pred cccccccCcchHHHHHHHHhccccCCeEEE
Q 016351 152 WMGYFLLRESMFDSVICARDRWLKPTGVMY 181 (391)
Q Consensus 152 ~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii 181 (391)
.+..++..+ ....++..+.+ +.++|++|
T Consensus 220 ~vL~H~p~~-~~~~ll~~l~~-l~~g~liI 247 (315)
T PLN02585 220 DVLIHYPQD-KADGMIAHLAS-LAEKRLII 247 (315)
T ss_pred CEEEecCHH-HHHHHHHHHHh-hcCCEEEE
Confidence 332222222 23455666654 46677655
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.26 E-value=4.6e-11 Score=120.28 Aligned_cols=106 Identities=22% Similarity=0.270 Sum_probs=82.9
Q ss_pred CCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEcccccc
Q 016351 79 GKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMGYF 156 (391)
Q Consensus 79 ~~~VLDlGcGtG~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~~D~Ivse~~~~~ 156 (391)
+.+|||+|||+|.+++.+++. +..+|+|+|+| .+++.|+++++.+++.++++++++|+.+....++||+|+|++. |.
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~~~~~fDlIvsNPP-Yi 217 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENIEKQKFDFIVSNPP-YI 217 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhCcCCCccEEEECCC-CC
Confidence 468999999999999988865 44589999999 8999999999999988889999999865322368999999763 21
Q ss_pred cc------------Cc------------chHHHHHHHHhccccCCeEEEcccc
Q 016351 157 LL------------RE------------SMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 157 ~~------------~e------------~~l~~~l~~~~~~L~~gG~ii~~~~ 185 (391)
.. +| .....++..+.++|+|||.+++...
T Consensus 218 ~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig 270 (506)
T PRK01544 218 SHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIG 270 (506)
T ss_pred CchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEEC
Confidence 11 11 1234567788899999999987644
|
|
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.25 E-value=4.8e-11 Score=108.50 Aligned_cols=106 Identities=11% Similarity=0.161 Sum_probs=85.7
Q ss_pred CCCCEEEEECCcccHHHHHHHHc--CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC------C-CCccc
Q 016351 77 FQGKTVLDVGTGSGILAIWSAQA--GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV------L-PEKVD 146 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~l~~~~a~~--g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~------~-~~~~D 146 (391)
.+.++|||+|||+|..++.+++. +..+|+++|.+ ++++.|+++++.+++.++|+++.+|+.+.- . .++||
T Consensus 67 ~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD 146 (234)
T PLN02781 67 MNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEFD 146 (234)
T ss_pred hCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCC
Confidence 45689999999999988877765 35589999999 899999999999999999999999997741 1 26899
Q ss_pred EEEEccccccccCcchHHHHHHHHhccccCCeEEEcccceeE
Q 016351 147 VIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHARMW 188 (391)
Q Consensus 147 ~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~~~~~ 188 (391)
+|+.+.- ......++..+.++|+|||+++....-+.
T Consensus 147 ~VfiDa~------k~~y~~~~~~~~~ll~~GG~ii~dn~l~~ 182 (234)
T PLN02781 147 FAFVDAD------KPNYVHFHEQLLKLVKVGGIIAFDNTLWF 182 (234)
T ss_pred EEEECCC------HHHHHHHHHHHHHhcCCCeEEEEEcCCcC
Confidence 9998642 12345678888899999999887655433
|
|
| >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Probab=99.25 E-value=3.7e-11 Score=106.32 Aligned_cols=105 Identities=15% Similarity=0.220 Sum_probs=81.5
Q ss_pred CCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC---CC-CcccEEEEc
Q 016351 78 QGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV---LP-EKVDVIISE 151 (391)
Q Consensus 78 ~~~~VLDlGcGtG~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~---~~-~~~D~Ivse 151 (391)
...+|||||||+|.++..+++. ...+|+|+|++ .+++.|++++...+++ +++++++|+.++. ++ +.+|.|+++
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~-ni~~i~~d~~~~~~~~~~~~~~d~v~~~ 94 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLK-NLHVLCGDANELLDKFFPDGSLSKVFLN 94 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCC-CEEEEccCHHHHHHhhCCCCceeEEEEE
Confidence 4468999999999999988886 34489999999 9999999999998887 4999999998753 33 589999975
Q ss_pred cccccccC-----cchHHHHHHHHhccccCCeEEEcc
Q 016351 152 WMGYFLLR-----ESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 152 ~~~~~~~~-----e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
........ .-....++..+.++|||||.+++.
T Consensus 95 ~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~ 131 (194)
T TIGR00091 95 FPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFK 131 (194)
T ss_pred CCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEE
Confidence 42221110 011256889999999999998754
|
In E. coli, this protein flanks the DNA repair protein MutY, also called micA. |
| >COG4106 Tam Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.25 E-value=2e-11 Score=105.46 Aligned_cols=109 Identities=15% Similarity=0.139 Sum_probs=87.8
Q ss_pred hcCCCCCCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEE
Q 016351 72 QNKHHFQGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVII 149 (391)
Q Consensus 72 ~~~~~~~~~~VLDlGcGtG~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~~D~Iv 149 (391)
..++......|.|||||+|..+..+++. +...|+|+|.| +|++.|++... + ++|..+|+.++..+.+.|+|+
T Consensus 24 a~Vp~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rlp-----~-~~f~~aDl~~w~p~~~~dllf 97 (257)
T COG4106 24 ARVPLERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRLP-----D-ATFEEADLRTWKPEQPTDLLF 97 (257)
T ss_pred hhCCccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhCC-----C-CceecccHhhcCCCCccchhh
Confidence 3455556689999999999999999887 55589999999 99998866542 2 899999999998889999999
Q ss_pred EccccccccCcchHHHHHHHHhccccCCeEEEcccceeEE
Q 016351 150 SEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHARMWV 189 (391)
Q Consensus 150 se~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~~~~~~ 189 (391)
++.+.+.+.. ...++..+...|.|||.+-........
T Consensus 98 aNAvlqWlpd---H~~ll~rL~~~L~Pgg~LAVQmPdN~d 134 (257)
T COG4106 98 ANAVLQWLPD---HPELLPRLVSQLAPGGVLAVQMPDNLD 134 (257)
T ss_pred hhhhhhhccc---cHHHHHHHHHhhCCCceEEEECCCccC
Confidence 9877666653 356788888899999998766554444
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.25 E-value=3.6e-11 Score=121.08 Aligned_cols=112 Identities=21% Similarity=0.390 Sum_probs=85.9
Q ss_pred HHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEccccc--CCCC-Cc
Q 016351 69 SIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVED--IVLP-EK 144 (391)
Q Consensus 69 ~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~--~~~~-~~ 144 (391)
.+...+...++.+|||||||+|.++..+++.+. +|+|+|++ .|++.+++. ++...+++++++|+.. ++++ ++
T Consensus 28 ~il~~l~~~~~~~vLDlGcG~G~~~~~la~~~~-~v~giD~s~~~l~~a~~~---~~~~~~i~~~~~d~~~~~~~~~~~~ 103 (475)
T PLN02336 28 EILSLLPPYEGKSVLELGAGIGRFTGELAKKAG-QVIALDFIESVIKKNESI---NGHYKNVKFMCADVTSPDLNISDGS 103 (475)
T ss_pred HHHhhcCccCCCEEEEeCCCcCHHHHHHHhhCC-EEEEEeCCHHHHHHHHHH---hccCCceEEEEecccccccCCCCCC
Confidence 344455555678999999999999999998865 89999999 898876543 2223459999999964 3444 78
Q ss_pred ccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcccc
Q 016351 145 VDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 145 ~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~~ 185 (391)
||+|+|..+.+++..+ .+..+++.+.++|+|||++++...
T Consensus 104 fD~I~~~~~l~~l~~~-~~~~~l~~~~r~Lk~gG~l~~~d~ 143 (475)
T PLN02336 104 VDLIFSNWLLMYLSDK-EVENLAERMVKWLKVGGYIFFRES 143 (475)
T ss_pred EEEEehhhhHHhCCHH-HHHHHHHHHHHhcCCCeEEEEEec
Confidence 9999997755555432 467889999999999999987654
|
|
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.4e-11 Score=112.45 Aligned_cols=107 Identities=19% Similarity=0.258 Sum_probs=79.7
Q ss_pred CCCEEEEECCcccH----HHHHHHHcCC------CeEEEEech-HHHHHHHHHHHH----c-------------------
Q 016351 78 QGKTVLDVGTGSGI----LAIWSAQAGA------RKVYAVEAT-KMSDHARTLVKA----N------------------- 123 (391)
Q Consensus 78 ~~~~VLDlGcGtG~----l~~~~a~~g~------~~V~avD~s-~~~~~a~~~~~~----~------------------- 123 (391)
++.+|||+|||||. +++.+++.+. .+|+|+|+| .|++.|++.+-. .
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~ 178 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR 178 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence 45799999999995 6666766532 379999999 999999875310 0
Q ss_pred ---CCCCcEEEEEcccccCCCC-CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcccc
Q 016351 124 ---NLQDVVEVIEGSVEDIVLP-EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 124 ---~~~~~v~~i~~d~~~~~~~-~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~~ 185 (391)
.+.++|+|.+.|+.+..++ ++||+|+|..+..++.. .....++..+.+.|+|||.+++...
T Consensus 179 v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~-~~~~~~l~~l~~~L~pGG~L~lg~~ 243 (264)
T smart00138 179 VKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDE-PTQRKLLNRFAEALKPGGYLFLGHS 243 (264)
T ss_pred EChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCH-HHHHHHHHHHHHHhCCCeEEEEECc
Confidence 1224699999999997764 89999999544333332 3456789999999999999986543
|
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >TIGR00095 RNA methyltransferase, RsmD family | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.1e-10 Score=102.53 Aligned_cols=105 Identities=20% Similarity=0.185 Sum_probs=82.0
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccC-C-C--C-CcccEEEE
Q 016351 77 FQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDI-V-L--P-EKVDVIIS 150 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~-~-~--~-~~~D~Ivs 150 (391)
.++.+|||++||+|.+++.++..|+++|++||.+ .+++.++++++.+++.++++++.+|+.+. . + . ..+|+|+.
T Consensus 48 ~~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~ 127 (189)
T TIGR00095 48 IQGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYL 127 (189)
T ss_pred cCCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEE
Confidence 4678999999999999999999999899999999 89999999999999987799999999553 1 1 1 24789888
Q ss_pred ccccccccCcchHHHHHHHH--hccccCCeEEEcccc
Q 016351 151 EWMGYFLLRESMFDSVICAR--DRWLKPTGVMYPSHA 185 (391)
Q Consensus 151 e~~~~~~~~e~~l~~~l~~~--~~~L~~gG~ii~~~~ 185 (391)
++.... .....++..+ ..+|+++|+++....
T Consensus 128 DPPy~~----~~~~~~l~~l~~~~~l~~~~iiv~E~~ 160 (189)
T TIGR00095 128 DPPFFN----GALQALLELCENNWILEDTVLIVVEED 160 (189)
T ss_pred CcCCCC----CcHHHHHHHHHHCCCCCCCeEEEEEec
Confidence 874322 1233334333 468999998886644
|
This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases. |
| >COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.1e-10 Score=104.06 Aligned_cols=107 Identities=29% Similarity=0.302 Sum_probs=93.5
Q ss_pred HHHhcCCCCCCCEEEEECCcccHHHHHHHHc-C-CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcc
Q 016351 69 SIFQNKHHFQGKTVLDVGTGSGILAIWSAQA-G-ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKV 145 (391)
Q Consensus 69 ~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~-g-~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~~ 145 (391)
.|.......++.+|||.|.|+|.++..+|++ | ..+|+.+|+. +.++.|++|++..++.++|++..+|+.+...++.|
T Consensus 85 ~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~~~v 164 (256)
T COG2519 85 YIVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDEEDV 164 (256)
T ss_pred HHHHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEecccccccccccc
Confidence 3556666789999999999999999999986 4 3699999999 99999999999999999999999999998777899
Q ss_pred cEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 146 DVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 146 D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
|.|+.+.. +...++..+.+.|+|||.++..
T Consensus 165 Dav~LDmp--------~PW~~le~~~~~Lkpgg~~~~y 194 (256)
T COG2519 165 DAVFLDLP--------DPWNVLEHVSDALKPGGVVVVY 194 (256)
T ss_pred CEEEEcCC--------ChHHHHHHHHHHhCCCcEEEEE
Confidence 99998653 3567889999999999988744
|
|
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=1e-10 Score=108.16 Aligned_cols=106 Identities=20% Similarity=0.215 Sum_probs=82.8
Q ss_pred CCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccC--CCCCcccEEEEccc
Q 016351 78 QGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDI--VLPEKVDVIISEWM 153 (391)
Q Consensus 78 ~~~~VLDlGcGtG~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~--~~~~~~D~Ivse~~ 153 (391)
++++|||||||+|.++..+++. +..+|++||++ .+++.|++.+...+..++++++.+|..+. ..+++||+|+++..
T Consensus 66 ~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~~ 145 (262)
T PRK04457 66 RPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDGF 145 (262)
T ss_pred CCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeCC
Confidence 4578999999999999988776 44589999999 99999999887666556799999998764 22468999999764
Q ss_pred ccc-ccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 154 GYF-LLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 154 ~~~-~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
... ....-....++..+.+.|+|||+++..
T Consensus 146 ~~~~~~~~l~t~efl~~~~~~L~pgGvlvin 176 (262)
T PRK04457 146 DGEGIIDALCTQPFFDDCRNALSSDGIFVVN 176 (262)
T ss_pred CCCCCccccCcHHHHHHHHHhcCCCcEEEEE
Confidence 321 111112367899999999999999864
|
|
| >TIGR02072 BioC biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Probab=99.21 E-value=1e-10 Score=106.63 Aligned_cols=99 Identities=26% Similarity=0.337 Sum_probs=79.7
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCC-CeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-CcccEEEEccc
Q 016351 77 FQGKTVLDVGTGSGILAIWSAQAGA-RKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIISEWM 153 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~l~~~~a~~g~-~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~-~~~D~Ivse~~ 153 (391)
.++.+|||||||+|.++..+++.+. .+++++|++ .++..+++... .+++++.+|+.+.+++ ++||+|++..+
T Consensus 33 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~-----~~~~~~~~d~~~~~~~~~~fD~vi~~~~ 107 (240)
T TIGR02072 33 FIPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS-----ENVQFICGDAEKLPLEDSSFDLIVSNLA 107 (240)
T ss_pred CCCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC-----CCCeEEecchhhCCCCCCceeEEEEhhh
Confidence 3457899999999999999998753 468999999 88888877654 2489999999988755 78999998544
Q ss_pred cccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 154 GYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 154 ~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
.+ +..++..++..+.++|+|||.+++.
T Consensus 108 l~---~~~~~~~~l~~~~~~L~~~G~l~~~ 134 (240)
T TIGR02072 108 LQ---WCDDLSQALSELARVLKPGGLLAFS 134 (240)
T ss_pred hh---hccCHHHHHHHHHHHcCCCcEEEEE
Confidence 33 2335678899999999999998865
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. |
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.7e-10 Score=107.79 Aligned_cols=121 Identities=25% Similarity=0.300 Sum_probs=88.5
Q ss_pred HhHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcC-CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEccccc
Q 016351 61 VRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVED 138 (391)
Q Consensus 61 ~r~~~~~~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g-~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~ 138 (391)
..++.+.+.+.......++.+|||+|||+|.++..+++.. ..+|+++|++ .+++.|+++++ +....+++++.+|+.+
T Consensus 91 ~~te~l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~-~~~~~~i~~~~~d~~~ 169 (275)
T PRK09328 91 PETEELVEWALEALLLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAK-HGLGARVEFLQGDWFE 169 (275)
T ss_pred CCcHHHHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH-hCCCCcEEEEEccccC
Confidence 3345555555544444566899999999999999999874 4589999999 89999999988 4444569999999866
Q ss_pred CCCCCcccEEEEcccccccc------------C------------cchHHHHHHHHhccccCCeEEEcc
Q 016351 139 IVLPEKVDVIISEWMGYFLL------------R------------ESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 139 ~~~~~~~D~Ivse~~~~~~~------------~------------e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
....++||+|++++. +... + ......++..+.++|+|||.+++.
T Consensus 170 ~~~~~~fD~Iv~npP-y~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e 237 (275)
T PRK09328 170 PLPGGRFDLIVSNPP-YIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLE 237 (275)
T ss_pred cCCCCceeEEEECCC-cCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEE
Confidence 433378999999753 1110 0 012356777788999999998863
|
|
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=99.21 E-value=2e-10 Score=105.67 Aligned_cols=118 Identities=24% Similarity=0.248 Sum_probs=86.9
Q ss_pred HHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC
Q 016351 64 DAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL 141 (391)
Q Consensus 64 ~~~~~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~ 141 (391)
+.+.+.+...+. ..+.+|||+|||+|.++..+++. ...+|+|+|++ .+++.|+++++.+++. +++++++|+.+...
T Consensus 74 ~~l~~~~l~~~~-~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~~~ 151 (251)
T TIGR03534 74 EELVEAALERLK-KGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLD-NVTFLQSDWFEPLP 151 (251)
T ss_pred HHHHHHHHHhcc-cCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCC-eEEEEECchhccCc
Confidence 334444444332 24468999999999999999987 34489999999 9999999999999886 49999999977433
Q ss_pred CCcccEEEEccccccc------cC-----c------------chHHHHHHHHhccccCCeEEEcc
Q 016351 142 PEKVDVIISEWMGYFL------LR-----E------------SMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 142 ~~~~D~Ivse~~~~~~------~~-----e------------~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
.++||+|++++.-... .. + .....+++.+.++|+|||.++..
T Consensus 152 ~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~ 216 (251)
T TIGR03534 152 GGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLE 216 (251)
T ss_pred CCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEE
Confidence 4789999997642210 00 0 01246778889999999998864
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. |
| >PHA03412 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=9.1e-11 Score=104.71 Aligned_cols=103 Identities=16% Similarity=0.113 Sum_probs=78.3
Q ss_pred CCCEEEEECCcccHHHHHHHHc----CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEcc
Q 016351 78 QGKTVLDVGTGSGILAIWSAQA----GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEW 152 (391)
Q Consensus 78 ~~~~VLDlGcGtG~l~~~~a~~----g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~~D~Ivse~ 152 (391)
.+.+|||+|||+|.+++.+++. ...+|+++|++ .++..|+++.. .+.++++|+....+.++||+|||++
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~------~~~~~~~D~~~~~~~~~FDlIIsNP 122 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP------EATWINADALTTEFDTLFDMAISNP 122 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc------CCEEEEcchhcccccCCccEEEECC
Confidence 4679999999999999988874 23489999999 89999987653 2889999998766667999999988
Q ss_pred ccccccCc---------chHHHHHHHHhccccCCeEEEcccce
Q 016351 153 MGYFLLRE---------SMFDSVICARDRWLKPTGVMYPSHAR 186 (391)
Q Consensus 153 ~~~~~~~e---------~~l~~~l~~~~~~L~~gG~ii~~~~~ 186 (391)
.-.-.... .....++..+.+++++|+.++|...-
T Consensus 123 PY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ILP~~~~ 165 (241)
T PHA03412 123 PFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTFIIPQMSA 165 (241)
T ss_pred CCCCccccccCCcccccHHHHHHHHHHHHHcCCCEEEeCcccc
Confidence 53211111 12455777777888999988887543
|
|
| >PRK14904 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.2e-10 Score=114.18 Aligned_cols=114 Identities=20% Similarity=0.204 Sum_probs=89.0
Q ss_pred CCCCCCCEEEEECCcccHHHHHHHHc--CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEE
Q 016351 74 KHHFQGKTVLDVGTGSGILAIWSAQA--GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIIS 150 (391)
Q Consensus 74 ~~~~~~~~VLDlGcGtG~l~~~~a~~--g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~~D~Ivs 150 (391)
+...++.+|||+|||+|..+..+++. +..+|+|+|++ .+++.++++++..|+.+ |+++++|+.++...++||+|++
T Consensus 246 l~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~-v~~~~~Da~~~~~~~~fD~Vl~ 324 (445)
T PRK14904 246 LNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITI-IETIEGDARSFSPEEQPDAILL 324 (445)
T ss_pred cCCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCe-EEEEeCcccccccCCCCCEEEE
Confidence 34457789999999999999888874 23489999999 99999999999999864 9999999988764478999998
Q ss_pred cccccccc------------Ccc-------hHHHHHHHHhccccCCeEEEcccceeE
Q 016351 151 EWMGYFLL------------RES-------MFDSVICARDRWLKPTGVMYPSHARMW 188 (391)
Q Consensus 151 e~~~~~~~------------~e~-------~l~~~l~~~~~~L~~gG~ii~~~~~~~ 188 (391)
++...... ... ....++..+.++|+|||+++.+.+++.
T Consensus 325 D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~ 381 (445)
T PRK14904 325 DAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIE 381 (445)
T ss_pred cCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence 75422211 001 123578899999999999998766554
|
|
| >COG1092 Predicted SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.19 E-value=1e-10 Score=112.47 Aligned_cols=113 Identities=25% Similarity=0.275 Sum_probs=93.6
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCC-CcEEEEEcccccCC-----CCCcccEEE
Q 016351 77 FQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQ-DVVEVIEGSVEDIV-----LPEKVDVII 149 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~-~~v~~i~~d~~~~~-----~~~~~D~Iv 149 (391)
.++++|||+-|-||.+++.+|..||++|+.||+| ..++.|+++++.||+. +++.++++|+.++- -..+||+||
T Consensus 216 ~~GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIi 295 (393)
T COG1092 216 AAGKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLII 295 (393)
T ss_pred ccCCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEE
Confidence 3589999999999999999999999999999999 9999999999999995 56899999998852 125999999
Q ss_pred Ecccccccc------CcchHHHHHHHHhccccCCeEEEcccceeEE
Q 016351 150 SEWMGYFLL------RESMFDSVICARDRWLKPTGVMYPSHARMWV 189 (391)
Q Consensus 150 se~~~~~~~------~e~~l~~~l~~~~~~L~~gG~ii~~~~~~~~ 189 (391)
.++..+.-. ...+...++..+.++|+|||+++.+.+....
T Consensus 296 lDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~~ 341 (393)
T COG1092 296 LDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSRHF 341 (393)
T ss_pred ECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCCcc
Confidence 998644321 1134567778889999999999988776554
|
|
| >COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.4e-10 Score=101.32 Aligned_cols=104 Identities=24% Similarity=0.280 Sum_probs=83.0
Q ss_pred HHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-Cccc
Q 016351 69 SIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVD 146 (391)
Q Consensus 69 ~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~-~~~D 146 (391)
.+.+.+...++.+|||||||+|..+..+|+... +|++||.. ...+.|+++++..|+.| |.++++|-..-..+ .+||
T Consensus 63 ~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~~-~V~siEr~~~L~~~A~~~L~~lg~~n-V~v~~gDG~~G~~~~aPyD 140 (209)
T COG2518 63 RMLQLLELKPGDRVLEIGTGSGYQAAVLARLVG-RVVSIERIEELAEQARRNLETLGYEN-VTVRHGDGSKGWPEEAPYD 140 (209)
T ss_pred HHHHHhCCCCCCeEEEECCCchHHHHHHHHHhC-eEEEEEEcHHHHHHHHHHHHHcCCCc-eEEEECCcccCCCCCCCcC
Confidence 455566677889999999999999999999855 89999999 89999999999999988 99999998775434 8999
Q ss_pred EEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 147 VIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 147 ~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
.|+...-.. ..++.++ +.|++||+++.-
T Consensus 141 ~I~Vtaaa~-----~vP~~Ll----~QL~~gGrlv~P 168 (209)
T COG2518 141 RIIVTAAAP-----EVPEALL----DQLKPGGRLVIP 168 (209)
T ss_pred EEEEeeccC-----CCCHHHH----HhcccCCEEEEE
Confidence 999743211 1234444 458999998743
|
|
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.4e-10 Score=104.17 Aligned_cols=100 Identities=19% Similarity=0.173 Sum_probs=77.3
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCC--------------CCcEEEEEcccccCCC
Q 016351 77 FQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNL--------------QDVVEVIEGSVEDIVL 141 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~--------------~~~v~~i~~d~~~~~~ 141 (391)
.++.+|||+|||.|..++.+|+.|. +|+|||+| ..++.+.+ ++++ ..+|++.++|+.++..
T Consensus 36 ~~~~rvL~~gCG~G~da~~LA~~G~-~V~avD~s~~Ai~~~~~---~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~ 111 (218)
T PRK13255 36 PAGSRVLVPLCGKSLDMLWLAEQGH-EVLGVELSELAVEQFFA---ENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTA 111 (218)
T ss_pred CCCCeEEEeCCCChHhHHHHHhCCC-eEEEEccCHHHHHHHHH---HcCCCccccccccccccccCceEEEECcccCCCc
Confidence 3567999999999999999999999 69999999 77776532 3332 2458999999998854
Q ss_pred C--CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEE
Q 016351 142 P--EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMY 181 (391)
Q Consensus 142 ~--~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii 181 (391)
. ..||+|+...+...+. ......++..+.++|+|||.++
T Consensus 112 ~~~~~fd~v~D~~~~~~l~-~~~R~~~~~~l~~lL~pgG~~~ 152 (218)
T PRK13255 112 ADLADVDAVYDRAALIALP-EEMRERYVQQLAALLPAGCRGL 152 (218)
T ss_pred ccCCCeeEEEehHhHhhCC-HHHHHHHHHHHHHHcCCCCeEE
Confidence 3 5899999755433333 3456788999999999998644
|
|
| >PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.7e-10 Score=106.94 Aligned_cols=109 Identities=23% Similarity=0.360 Sum_probs=83.3
Q ss_pred CCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCC-CcEEEEEcccccCC----CCCcccEEEEc
Q 016351 78 QGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQ-DVVEVIEGSVEDIV----LPEKVDVIISE 151 (391)
Q Consensus 78 ~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~-~~v~~i~~d~~~~~----~~~~~D~Ivse 151 (391)
++++|||+-|-||.+++.++..||++|+.||.| .+++.|+++++.|+++ ++++++..|+.+.- -.++||+||++
T Consensus 123 ~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIlD 202 (286)
T PF10672_consen 123 KGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIILD 202 (286)
T ss_dssp TTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE-
T ss_pred CCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEEEC
Confidence 578999999999999999999999999999999 9999999999999986 67999999987631 23699999999
Q ss_pred cccccccC---cchHHHHHHHHhccccCCeEEEcccce
Q 016351 152 WMGYFLLR---ESMFDSVICARDRWLKPTGVMYPSHAR 186 (391)
Q Consensus 152 ~~~~~~~~---e~~l~~~l~~~~~~L~~gG~ii~~~~~ 186 (391)
+..+.-.. +.+...++..+.++|+|||.++.+.++
T Consensus 203 PPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs 240 (286)
T PF10672_consen 203 PPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCS 240 (286)
T ss_dssp -SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCC
Confidence 86443221 124566788888999999998876554
|
The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A. |
| >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.1e-10 Score=106.39 Aligned_cols=113 Identities=17% Similarity=0.039 Sum_probs=87.5
Q ss_pred CCCCCCEEEEECCcccHHHHHHHHc-C-CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-CcccEEEE
Q 016351 75 HHFQGKTVLDVGTGSGILAIWSAQA-G-ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIIS 150 (391)
Q Consensus 75 ~~~~~~~VLDlGcGtG~l~~~~a~~-g-~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~-~~~D~Ivs 150 (391)
...++.+|||+|||+|..+..+++. + ..+|+|+|++ .+++.++++++.+++.+ |++++.|...+... ++||.|++
T Consensus 68 ~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~-v~~~~~D~~~~~~~~~~fD~Vl~ 146 (264)
T TIGR00446 68 EPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLN-VAVTNFDGRVFGAAVPKFDAILL 146 (264)
T ss_pred CCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCc-EEEecCCHHHhhhhccCCCEEEE
Confidence 3457789999999999999988875 2 3489999999 99999999999999865 99999998876433 67999999
Q ss_pred cccccccc------------Ccc-------hHHHHHHHHhccccCCeEEEcccceeE
Q 016351 151 EWMGYFLL------------RES-------MFDSVICARDRWLKPTGVMYPSHARMW 188 (391)
Q Consensus 151 e~~~~~~~------------~e~-------~l~~~l~~~~~~L~~gG~ii~~~~~~~ 188 (391)
++..+... .+. ....++..+.++|+|||+++.+.+++.
T Consensus 147 D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~ 203 (264)
T TIGR00446 147 DAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSLE 203 (264)
T ss_pred cCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence 86533221 011 124588888999999999986655533
|
|
| >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Probab=99.17 E-value=3.3e-10 Score=104.16 Aligned_cols=120 Identities=20% Similarity=0.217 Sum_probs=84.9
Q ss_pred hHHHHHHHHHhcCCC-CCCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEccccc
Q 016351 62 RMDAYFNSIFQNKHH-FQGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVED 138 (391)
Q Consensus 62 r~~~~~~~i~~~~~~-~~~~~VLDlGcGtG~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~ 138 (391)
.++.+.+.+...+.. ....+|||+|||+|.+++.+++. +..+|+++|+| .+++.|+++++.++ ++++++|+.+
T Consensus 69 ~Te~Lv~~~l~~~~~~~~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~----~~~~~~D~~~ 144 (251)
T TIGR03704 69 RTEFLVDEAAALARPRSGTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAG----GTVHEGDLYD 144 (251)
T ss_pred cHHHHHHHHHHhhcccCCCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC----CEEEEeechh
Confidence 344555544443322 22358999999999999998875 33489999999 99999999998876 4789999876
Q ss_pred CC---CCCcccEEEEccccccc------c-----Cc------------chHHHHHHHHhccccCCeEEEcccc
Q 016351 139 IV---LPEKVDVIISEWMGYFL------L-----RE------------SMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 139 ~~---~~~~~D~Ivse~~~~~~------~-----~e------------~~l~~~l~~~~~~L~~gG~ii~~~~ 185 (391)
.. ..++||+|++++...-. . ++ ..+..++..+.++|+|||.++....
T Consensus 145 ~l~~~~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~ 217 (251)
T TIGR03704 145 ALPTALRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETS 217 (251)
T ss_pred hcchhcCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 32 13579999998742100 0 00 1245778888899999999886543
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. |
| >PRK10901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.7e-10 Score=112.90 Aligned_cols=113 Identities=19% Similarity=0.176 Sum_probs=87.9
Q ss_pred CCCCCCCEEEEECCcccHHHHHHHHcCC-CeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC--C-CCcccEE
Q 016351 74 KHHFQGKTVLDVGTGSGILAIWSAQAGA-RKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV--L-PEKVDVI 148 (391)
Q Consensus 74 ~~~~~~~~VLDlGcGtG~l~~~~a~~g~-~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~--~-~~~~D~I 148 (391)
+...++.+|||+|||+|..++.+++.+. .+|+|+|++ .++..++++++.+|+. ++++++|+.++. . +++||.|
T Consensus 240 l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~--~~~~~~D~~~~~~~~~~~~fD~V 317 (427)
T PRK10901 240 LAPQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLK--ATVIVGDARDPAQWWDGQPFDRI 317 (427)
T ss_pred cCCCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCC--eEEEEcCcccchhhcccCCCCEE
Confidence 3456788999999999999999988743 489999999 9999999999999885 789999998753 1 3679999
Q ss_pred EEcccccccc------------Ccc-------hHHHHHHHHhccccCCeEEEcccceeE
Q 016351 149 ISEWMGYFLL------------RES-------MFDSVICARDRWLKPTGVMYPSHARMW 188 (391)
Q Consensus 149 vse~~~~~~~------------~e~-------~l~~~l~~~~~~L~~gG~ii~~~~~~~ 188 (391)
++++...... ... ....++..+.++|+|||.++.+.+++.
T Consensus 318 l~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~ 376 (427)
T PRK10901 318 LLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSIL 376 (427)
T ss_pred EECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence 9877432210 111 124678888999999999997766544
|
|
| >PRK14902 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.5e-10 Score=113.73 Aligned_cols=114 Identities=19% Similarity=0.135 Sum_probs=88.3
Q ss_pred CCCCCCCEEEEECCcccHHHHHHHHc--CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC--CCCcccEE
Q 016351 74 KHHFQGKTVLDVGTGSGILAIWSAQA--GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV--LPEKVDVI 148 (391)
Q Consensus 74 ~~~~~~~~VLDlGcGtG~l~~~~a~~--g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~--~~~~~D~I 148 (391)
+...++.+|||+|||+|..+..+++. +..+|+|+|++ .+++.++++++.+|+.+ |+++++|+.++. ++++||+|
T Consensus 246 l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~-v~~~~~D~~~~~~~~~~~fD~V 324 (444)
T PRK14902 246 LDPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTN-IETKALDARKVHEKFAEKFDKI 324 (444)
T ss_pred hCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCe-EEEEeCCcccccchhcccCCEE
Confidence 33456789999999999999998886 34589999999 89999999999999976 999999998763 33789999
Q ss_pred EEcccccccc------------Ccch-------HHHHHHHHhccccCCeEEEcccceeE
Q 016351 149 ISEWMGYFLL------------RESM-------FDSVICARDRWLKPTGVMYPSHARMW 188 (391)
Q Consensus 149 vse~~~~~~~------------~e~~-------l~~~l~~~~~~L~~gG~ii~~~~~~~ 188 (391)
++++..+... .+.. ...++..+.++|+|||.++.+.+++.
T Consensus 325 l~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~ 383 (444)
T PRK14902 325 LVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTIE 383 (444)
T ss_pred EEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCCC
Confidence 9986422111 0011 24578888999999999986555443
|
|
| >PRK14903 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.8e-10 Score=112.57 Aligned_cols=114 Identities=17% Similarity=0.142 Sum_probs=89.9
Q ss_pred CCCCCCCEEEEECCcccHHHHHHHHc--CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC--CCCcccEE
Q 016351 74 KHHFQGKTVLDVGTGSGILAIWSAQA--GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV--LPEKVDVI 148 (391)
Q Consensus 74 ~~~~~~~~VLDlGcGtG~l~~~~a~~--g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~--~~~~~D~I 148 (391)
+...++.+|||+|||+|..+..+++. +..+|+|+|++ .+++.+++++++.|+.+ ++++++|..++. ..++||.|
T Consensus 233 l~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~-v~~~~~Da~~l~~~~~~~fD~V 311 (431)
T PRK14903 233 MELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSS-IEIKIADAERLTEYVQDTFDRI 311 (431)
T ss_pred hCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCe-EEEEECchhhhhhhhhccCCEE
Confidence 34567789999999999999988876 24589999999 99999999999999865 999999998765 24789999
Q ss_pred EEccccccccCc-------------------chHHHHHHHHhccccCCeEEEcccceeE
Q 016351 149 ISEWMGYFLLRE-------------------SMFDSVICARDRWLKPTGVMYPSHARMW 188 (391)
Q Consensus 149 vse~~~~~~~~e-------------------~~l~~~l~~~~~~L~~gG~ii~~~~~~~ 188 (391)
++++..+..... .....++..+.++|+|||.++.+.+++.
T Consensus 312 l~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~ 370 (431)
T PRK14903 312 LVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVT 370 (431)
T ss_pred EECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCC
Confidence 997654322210 0125668888999999999998777643
|
|
| >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Probab=99.16 E-value=4.1e-10 Score=102.28 Aligned_cols=101 Identities=21% Similarity=0.269 Sum_probs=77.4
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEccccc
Q 016351 77 FQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMGY 155 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~~D~Ivse~~~~ 155 (391)
.++.+|||||||+|.++..+++.+. +|+++|++ .|++.|+++....+..+++++..+|+... .+.||+|++..+.+
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~~~-~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~--~~~fD~v~~~~~l~ 138 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARRGA-KVVASDISPQMVEEARERAPEAGLAGNITFEVGDLESL--LGRFDTVVCLDVLI 138 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchhc--cCCcCEEEEcchhh
Confidence 4568999999999999999999887 69999999 99999999998888766799999995432 37899999843222
Q ss_pred cccCcchHHHHHHHHhccccCCeEEE
Q 016351 156 FLLRESMFDSVICARDRWLKPTGVMY 181 (391)
Q Consensus 156 ~~~~e~~l~~~l~~~~~~L~~gG~ii 181 (391)
... ...+..+++.+.+.+++++++.
T Consensus 139 ~~~-~~~~~~~l~~l~~~~~~~~~i~ 163 (230)
T PRK07580 139 HYP-QEDAARMLAHLASLTRGSLIFT 163 (230)
T ss_pred cCC-HHHHHHHHHHHHhhcCCeEEEE
Confidence 222 2346677888877765555443
|
|
| >PRK14901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=3.3e-10 Score=112.46 Aligned_cols=114 Identities=14% Similarity=0.186 Sum_probs=89.5
Q ss_pred CCCCCCCEEEEECCcccHHHHHHHHc-C-CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC----C-CCcc
Q 016351 74 KHHFQGKTVLDVGTGSGILAIWSAQA-G-ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV----L-PEKV 145 (391)
Q Consensus 74 ~~~~~~~~VLDlGcGtG~l~~~~a~~-g-~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~----~-~~~~ 145 (391)
+...++.+|||+|||+|..+..+++. + ..+|+|+|++ .+++.++++++.+|+.+ |+++++|+.++. . .++|
T Consensus 248 l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~-v~~~~~D~~~~~~~~~~~~~~f 326 (434)
T PRK14901 248 LDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKS-IKILAADSRNLLELKPQWRGYF 326 (434)
T ss_pred hCCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCe-EEEEeCChhhcccccccccccC
Confidence 34457789999999999999988876 2 3489999999 99999999999999976 999999998864 2 3689
Q ss_pred cEEEEccccccccC----c--------c-------hHHHHHHHHhccccCCeEEEcccceeE
Q 016351 146 DVIISEWMGYFLLR----E--------S-------MFDSVICARDRWLKPTGVMYPSHARMW 188 (391)
Q Consensus 146 D~Ivse~~~~~~~~----e--------~-------~l~~~l~~~~~~L~~gG~ii~~~~~~~ 188 (391)
|.|++++..+.... . . ....++..+.++|||||+++.+.++++
T Consensus 327 D~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~ 388 (434)
T PRK14901 327 DRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLH 388 (434)
T ss_pred CEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence 99999764332110 0 0 135778889999999999987666544
|
|
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=3.2e-10 Score=106.08 Aligned_cols=109 Identities=21% Similarity=0.194 Sum_probs=83.8
Q ss_pred CCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcC--C--CCcEEEEEcccccCC--CCCcccEEE
Q 016351 78 QGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANN--L--QDVVEVIEGSVEDIV--LPEKVDVII 149 (391)
Q Consensus 78 ~~~~VLDlGcGtG~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~--~--~~~v~~i~~d~~~~~--~~~~~D~Iv 149 (391)
++++||+||||+|.++..+++. +..+|++||++ .+++.|++.+...+ . ..+++++.+|...+. ..++||+|+
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi 155 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVII 155 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEEE
Confidence 4579999999999999998887 67799999999 99999999876532 2 457999999988753 237899999
Q ss_pred EccccccccCcc-hHHHHHHHHhccccCCeEEEcccce
Q 016351 150 SEWMGYFLLRES-MFDSVICARDRWLKPTGVMYPSHAR 186 (391)
Q Consensus 150 se~~~~~~~~e~-~l~~~l~~~~~~L~~gG~ii~~~~~ 186 (391)
++.......... ....+++.+++.|+|||+++.....
T Consensus 156 ~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~~~ 193 (283)
T PRK00811 156 VDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQSGS 193 (283)
T ss_pred ECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeCCC
Confidence 976433322111 1256788899999999999865443
|
|
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=3.3e-10 Score=103.15 Aligned_cols=109 Identities=21% Similarity=0.195 Sum_probs=74.7
Q ss_pred HHHHHhcCCCCCCCEEEEECCcccHHHHHHHHc----CC-CeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC
Q 016351 67 FNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQA----GA-RKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV 140 (391)
Q Consensus 67 ~~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~----g~-~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~ 140 (391)
...+...+...++.+|||||||+|.++..+++. |. .+|+|+|+| .|++.|+++...++ +++...+...+.
T Consensus 49 ~~~~~~~l~~~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~----~~~~~~~~~~l~ 124 (232)
T PRK06202 49 RRLLRPALSADRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPG----VTFRQAVSDELV 124 (232)
T ss_pred HHHHHHhcCCCCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCC----CeEEEEeccccc
Confidence 333333333345679999999999998887753 32 379999999 99999988765443 556666555554
Q ss_pred CC-CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEE
Q 016351 141 LP-EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMY 181 (391)
Q Consensus 141 ~~-~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii 181 (391)
.+ ++||+|+|..+.+.+..+ .+..+++++.++++ +++++
T Consensus 125 ~~~~~fD~V~~~~~lhh~~d~-~~~~~l~~~~r~~~-~~~~i 164 (232)
T PRK06202 125 AEGERFDVVTSNHFLHHLDDA-EVVRLLADSAALAR-RLVLH 164 (232)
T ss_pred ccCCCccEEEECCeeecCChH-HHHHHHHHHHHhcC-eeEEE
Confidence 43 799999996544444332 35678999999887 44433
|
|
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=5.5e-10 Score=105.73 Aligned_cols=104 Identities=23% Similarity=0.158 Sum_probs=79.0
Q ss_pred HHHhcCCCCCCCEEEEECCcccHHHHHHHHcCC--CeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-Cc
Q 016351 69 SIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGA--RKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EK 144 (391)
Q Consensus 69 ~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g~--~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~-~~ 144 (391)
.+.+.+...++.+|||||||+|.++..+++... .+|+++|.+ .+++.|+++++.+++.+ +.++++|..+.... .+
T Consensus 71 ~ll~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~n-V~~i~gD~~~~~~~~~~ 149 (322)
T PRK13943 71 LFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIEN-VIFVCGDGYYGVPEFAP 149 (322)
T ss_pred HHHHhcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCc-EEEEeCChhhcccccCC
Confidence 344444455778999999999999999988632 369999999 99999999999998854 89999998765433 67
Q ss_pred ccEEEEccccccccCcchHHHHHHHHhccccCCeEEEc
Q 016351 145 VDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 145 ~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~ 182 (391)
||+|++.. . ...+...+.+.|+|||.++.
T Consensus 150 fD~Ii~~~---g------~~~ip~~~~~~LkpgG~Lvv 178 (322)
T PRK13943 150 YDVIFVTV---G------VDEVPETWFTQLKEGGRVIV 178 (322)
T ss_pred ccEEEECC---c------hHHhHHHHHHhcCCCCEEEE
Confidence 99999742 1 11223345678999998764
|
|
| >PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=4.4e-10 Score=107.93 Aligned_cols=107 Identities=19% Similarity=0.286 Sum_probs=83.1
Q ss_pred CCCCCEEEEECCcccHHHHHHHHcC-CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccC--CCC-CcccEEEE
Q 016351 76 HFQGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDI--VLP-EKVDVIIS 150 (391)
Q Consensus 76 ~~~~~~VLDlGcGtG~l~~~~a~~g-~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~--~~~-~~~D~Ivs 150 (391)
...+..+||||||+|.++..+|+.. ...++|+|++ +++..|.+++..+++.+ +.++++|+..+ .++ +.+|.|++
T Consensus 120 ~~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~N-V~~i~~DA~~ll~~~~~~s~D~I~l 198 (390)
T PRK14121 120 KNQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKN-LLIINYDARLLLELLPSNSVEKIFV 198 (390)
T ss_pred CCCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCc-EEEEECCHHHhhhhCCCCceeEEEE
Confidence 3456789999999999999998873 4479999999 99999999999999977 99999999764 233 78999997
Q ss_pred ccccccccCc-c--hHHHHHHHHhccccCCeEEEcc
Q 016351 151 EWMGYFLLRE-S--MFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 151 e~~~~~~~~e-~--~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
.......-.. . ..+.++..+.|+|+|||.+.+.
T Consensus 199 nFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~ 234 (390)
T PRK14121 199 HFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELR 234 (390)
T ss_pred eCCCCccccchhhccHHHHHHHHHHHcCCCcEEEEE
Confidence 4322111000 0 1367899999999999988754
|
|
| >TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase | Back alignment and domain information |
|---|
Probab=99.15 E-value=3.1e-10 Score=100.98 Aligned_cols=90 Identities=14% Similarity=0.222 Sum_probs=70.1
Q ss_pred CCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-CcccEEEEcccc
Q 016351 78 QGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIISEWMG 154 (391)
Q Consensus 78 ~~~~VLDlGcGtG~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~-~~~D~Ivse~~~ 154 (391)
++.+|||||||+|.++..+++. +..+++|||+| .|++.|+++.. .++++++|+.+ +++ ++||+|++..+.
T Consensus 43 ~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~------~~~~~~~d~~~-~~~~~sfD~V~~~~vL 115 (204)
T TIGR03587 43 KIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLP------NINIIQGSLFD-PFKDNFFDLVLTKGVL 115 (204)
T ss_pred CCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCC------CCcEEEeeccC-CCCCCCEEEEEECChh
Confidence 5578999999999999988886 44589999999 89999987542 27888999887 444 799999996554
Q ss_pred ccccCcchHHHHHHHHhcccc
Q 016351 155 YFLLRESMFDSVICARDRWLK 175 (391)
Q Consensus 155 ~~~~~e~~l~~~l~~~~~~L~ 175 (391)
+++. ...+..+++++.++++
T Consensus 116 ~hl~-p~~~~~~l~el~r~~~ 135 (204)
T TIGR03587 116 IHIN-PDNLPTAYRELYRCSN 135 (204)
T ss_pred hhCC-HHHHHHHHHHHHhhcC
Confidence 4443 2356778888888873
|
Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme |
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=4.2e-10 Score=100.61 Aligned_cols=96 Identities=20% Similarity=0.294 Sum_probs=71.2
Q ss_pred CCCCEEEEECCcccHHHHHHHHcC-C-CeEEEEechHHHHHHHHHHHHcCCCCcEEEEEcccccCC--------C-CCcc
Q 016351 77 FQGKTVLDVGTGSGILAIWSAQAG-A-RKVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVEDIV--------L-PEKV 145 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~l~~~~a~~g-~-~~V~avD~s~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~--------~-~~~~ 145 (391)
.++.+|||||||+|.++..+++.. . .+|+|||+++|. .+.+ ++++++|+.+.. + .+++
T Consensus 50 ~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~~----------~~~~-v~~i~~D~~~~~~~~~i~~~~~~~~~ 118 (209)
T PRK11188 50 KPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPMD----------PIVG-VDFLQGDFRDELVLKALLERVGDSKV 118 (209)
T ss_pred CCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccccc----------CCCC-cEEEecCCCChHHHHHHHHHhCCCCC
Confidence 467899999999999999888873 2 489999999732 2233 899999998853 3 3789
Q ss_pred cEEEEccccccccCcc--------hHHHHHHHHhccccCCeEEEcc
Q 016351 146 DVIISEWMGYFLLRES--------MFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 146 D~Ivse~~~~~~~~e~--------~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
|+|+|+...+...... .+..++..+.++|+|||.++..
T Consensus 119 D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~ 164 (209)
T PRK11188 119 QVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVK 164 (209)
T ss_pred CEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 9999976433322110 1246788999999999998863
|
|
| >PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.13 E-value=5.5e-10 Score=106.33 Aligned_cols=111 Identities=13% Similarity=0.125 Sum_probs=81.3
Q ss_pred HHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC--CC
Q 016351 67 FNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL--PE 143 (391)
Q Consensus 67 ~~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~--~~ 143 (391)
.+.+.+.+...++.+|||+|||+|.+++.+++.+. +|+|+|.+ .+++.|+++++.+++. +++++++|+.++.. .+
T Consensus 162 ~~~v~~~l~~~~~~~VLDl~cG~G~~sl~la~~~~-~V~gvD~s~~av~~A~~n~~~~~l~-~v~~~~~D~~~~~~~~~~ 239 (315)
T PRK03522 162 YATARDWVRELPPRSMWDLFCGVGGFGLHCATPGM-QLTGIEISAEAIACAKQSAAELGLT-NVQFQALDSTQFATAQGE 239 (315)
T ss_pred HHHHHHHHHhcCCCEEEEccCCCCHHHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEEcCHHHHHHhcCC
Confidence 33333333334568999999999999999999875 89999999 9999999999999994 59999999987642 25
Q ss_pred cccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcccc
Q 016351 144 KVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 144 ~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~~ 185 (391)
+||+|++++.-.. ....++..+.+ ++|+++++.+..
T Consensus 240 ~~D~Vv~dPPr~G-----~~~~~~~~l~~-~~~~~ivyvsc~ 275 (315)
T PRK03522 240 VPDLVLVNPPRRG-----IGKELCDYLSQ-MAPRFILYSSCN 275 (315)
T ss_pred CCeEEEECCCCCC-----ccHHHHHHHHH-cCCCeEEEEECC
Confidence 7999999875322 22233333333 577776665433
|
|
| >smart00650 rADc Ribosomal RNA adenine dimethylases | Back alignment and domain information |
|---|
Probab=99.13 E-value=5.4e-10 Score=96.61 Aligned_cols=106 Identities=21% Similarity=0.268 Sum_probs=77.0
Q ss_pred HHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-CcccE
Q 016351 70 IFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVDV 147 (391)
Q Consensus 70 i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~-~~~D~ 147 (391)
+...+...++.+|||||||+|.++..+++.+ .+|+++|++ .+++.+++++.. .++++++++|+.++.++ ..+|.
T Consensus 5 i~~~~~~~~~~~vLEiG~G~G~lt~~l~~~~-~~v~~vE~~~~~~~~~~~~~~~---~~~v~ii~~D~~~~~~~~~~~d~ 80 (169)
T smart00650 5 IVRAANLRPGDTVLEIGPGKGALTEELLERA-ARVTAIEIDPRLAPRLREKFAA---ADNLTVIHGDALKFDLPKLQPYK 80 (169)
T ss_pred HHHhcCCCCcCEEEEECCCccHHHHHHHhcC-CeEEEEECCHHHHHHHHHHhcc---CCCEEEEECchhcCCccccCCCE
Confidence 4444445567899999999999999999985 489999999 899999888754 23599999999998766 46999
Q ss_pred EEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 148 IISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 148 Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
|++++. +... ...+..++.. ..+.++|.++..
T Consensus 81 vi~n~P-y~~~-~~~i~~~l~~--~~~~~~~~l~~q 112 (169)
T smart00650 81 VVGNLP-YNIS-TPILFKLLEE--PPAFRDAVLMVQ 112 (169)
T ss_pred EEECCC-cccH-HHHHHHHHhc--CCCcceEEEEEE
Confidence 999864 3221 2233333332 224577777655
|
|
| >TIGR03438 probable methyltransferase | Back alignment and domain information |
|---|
Probab=99.12 E-value=5.7e-10 Score=105.47 Aligned_cols=116 Identities=13% Similarity=0.067 Sum_probs=80.6
Q ss_pred HHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcC--CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEccccc-CCCC
Q 016351 67 FNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAG--ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVED-IVLP 142 (391)
Q Consensus 67 ~~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g--~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~-~~~~ 142 (391)
.+.|...+ .++.+|||+|||+|..+..++++. ..+|+++|+| +|++.|++++....-.-+|.++++|+.+ +.++
T Consensus 54 ~~~ia~~~--~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~ 131 (301)
T TIGR03438 54 ADEIAAAT--GAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALP 131 (301)
T ss_pred HHHHHHhh--CCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhh
Confidence 34444443 245789999999999999988874 2479999999 9999998887654322248889999987 3444
Q ss_pred Ccc---cE--EEEccccccccCcchHHHHHHHHhccccCCeEEEcccc
Q 016351 143 EKV---DV--IISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 143 ~~~---D~--Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~~ 185 (391)
..+ +. +++....+.+. ......+++.+++.|+|||.+++...
T Consensus 132 ~~~~~~~~~~~~~gs~~~~~~-~~e~~~~L~~i~~~L~pgG~~lig~d 178 (301)
T TIGR03438 132 PEPAAGRRLGFFPGSTIGNFT-PEEAVAFLRRIRQLLGPGGGLLIGVD 178 (301)
T ss_pred cccccCCeEEEEecccccCCC-HHHHHHHHHHHHHhcCCCCEEEEecc
Confidence 333 33 33322222222 33467889999999999999986543
|
This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases |
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Probab=99.12 E-value=6e-10 Score=110.42 Aligned_cols=116 Identities=16% Similarity=0.056 Sum_probs=88.1
Q ss_pred CCCCCCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC---CCcccEE
Q 016351 74 KHHFQGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL---PEKVDVI 148 (391)
Q Consensus 74 ~~~~~~~~VLDlGcGtG~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~---~~~~D~I 148 (391)
+...++.+|||+|||+|..+..+++. +..+|+|+|++ .+++.+++++++.|+...+.++.+|...... .++||.|
T Consensus 234 L~~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~~fD~V 313 (426)
T TIGR00563 234 LAPQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENEQFDRI 313 (426)
T ss_pred hCCCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccccccCEE
Confidence 34457789999999999999998886 44589999999 9999999999999987445557777765442 3689999
Q ss_pred EEcccccccc--C--cc---------------hHHHHHHHHhccccCCeEEEcccceeEE
Q 016351 149 ISEWMGYFLL--R--ES---------------MFDSVICARDRWLKPTGVMYPSHARMWV 189 (391)
Q Consensus 149 vse~~~~~~~--~--e~---------------~l~~~l~~~~~~L~~gG~ii~~~~~~~~ 189 (391)
++++..+... . .. ....++..+.++|||||.++.+.+++..
T Consensus 314 llDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~~ 373 (426)
T TIGR00563 314 LLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVLP 373 (426)
T ss_pred EEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCCh
Confidence 9876433211 1 00 1356888899999999999987776553
|
The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. |
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.12 E-value=2e-11 Score=106.20 Aligned_cols=134 Identities=17% Similarity=0.238 Sum_probs=90.9
Q ss_pred ccchhhhhhhhhhhhhHhhcCChHhH---HHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHH
Q 016351 38 VDFANYFCTYAFLYHQKEMLSDRVRM---DAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMS 113 (391)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~ml~d~~r~---~~~~~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~ 113 (391)
-..+..|+.|+...++. |-|+..| ....+.|.. ....+-+++||||||||+.+..+-.. +.+++|+|+| .|+
T Consensus 85 aYVe~LFD~~Ae~Fd~~--LVdkL~Y~vP~~l~emI~~-~~~g~F~~~lDLGCGTGL~G~~lR~~-a~~ltGvDiS~nMl 160 (287)
T COG4976 85 AYVETLFDQYAERFDHI--LVDKLGYSVPELLAEMIGK-ADLGPFRRMLDLGCGTGLTGEALRDM-ADRLTGVDISENML 160 (287)
T ss_pred HHHHHHHHHHHHHHHHH--HHHHhcCccHHHHHHHHHh-ccCCccceeeecccCcCcccHhHHHH-HhhccCCchhHHHH
Confidence 34567889999888774 4333332 233333433 33333589999999999998877665 4489999999 999
Q ss_pred HHHHHHHHHcCCCCcEEEEEcccccC---CCCCcccEEEE-ccccccccCcchHHHHHHHHhccccCCeEEEcccc
Q 016351 114 DHARTLVKANNLQDVVEVIEGSVEDI---VLPEKVDVIIS-EWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 114 ~~a~~~~~~~~~~~~v~~i~~d~~~~---~~~~~~D~Ivs-e~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~~ 185 (391)
+.|.++--.. ++.+.+...+ ..+++||+|++ +.+.|. +.+..++..+..+|+|||.+.++.-
T Consensus 161 ~kA~eKg~YD------~L~~Aea~~Fl~~~~~er~DLi~AaDVl~Yl----G~Le~~~~~aa~~L~~gGlfaFSvE 226 (287)
T COG4976 161 AKAHEKGLYD------TLYVAEAVLFLEDLTQERFDLIVAADVLPYL----GALEGLFAGAAGLLAPGGLFAFSVE 226 (287)
T ss_pred HHHHhccchH------HHHHHHHHHHhhhccCCcccchhhhhHHHhh----cchhhHHHHHHHhcCCCceEEEEec
Confidence 8887643221 2333443322 22489999998 554444 4677888899999999999987643
|
|
| >PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2 | Back alignment and domain information |
|---|
Probab=99.12 E-value=3.4e-10 Score=100.67 Aligned_cols=106 Identities=25% Similarity=0.331 Sum_probs=76.9
Q ss_pred HHHHHhcCCCCCCCEEEEECCcccHHHHHHHHc-CCC-eEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-
Q 016351 67 FNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQA-GAR-KVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP- 142 (391)
Q Consensus 67 ~~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~-g~~-~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~- 142 (391)
...+.+.+...++.+|||||||+|.++..+++. |.. +|++||.. .+++.|+++++..++.+ |+++++|...-...
T Consensus 61 ~a~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~n-v~~~~gdg~~g~~~~ 139 (209)
T PF01135_consen 61 VARMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDN-VEVVVGDGSEGWPEE 139 (209)
T ss_dssp HHHHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHS-EEEEES-GGGTTGGG
T ss_pred HHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCc-eeEEEcchhhccccC
Confidence 344556666778999999999999999999987 432 69999999 89999999999998875 99999998764323
Q ss_pred CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEc
Q 016351 143 EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 143 ~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~ 182 (391)
.+||.|++... . +..... +.+.|++||+++.
T Consensus 140 apfD~I~v~~a---~--~~ip~~----l~~qL~~gGrLV~ 170 (209)
T PF01135_consen 140 APFDRIIVTAA---V--PEIPEA----LLEQLKPGGRLVA 170 (209)
T ss_dssp -SEEEEEESSB---B--SS--HH----HHHTEEEEEEEEE
T ss_pred CCcCEEEEeec---c--chHHHH----HHHhcCCCcEEEE
Confidence 78999998431 1 112233 4456899999874
|
1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A .... |
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=6e-10 Score=103.91 Aligned_cols=89 Identities=19% Similarity=0.265 Sum_probs=69.8
Q ss_pred CCCEEEEECCcccHHHHHHHHcCC----CeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-CcccEEEEc
Q 016351 78 QGKTVLDVGTGSGILAIWSAQAGA----RKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIISE 151 (391)
Q Consensus 78 ~~~~VLDlGcGtG~l~~~~a~~g~----~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~-~~~D~Ivse 151 (391)
+..+|||+|||+|.++..+++... .+|+|+|+| .|++.|+++. ..+.++.+|+.+++++ ++||+|++.
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~------~~~~~~~~d~~~lp~~~~sfD~I~~~ 158 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY------PQVTFCVASSHRLPFADQSLDAIIRI 158 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC------CCCeEEEeecccCCCcCCceeEEEEe
Confidence 457899999999999988876521 269999999 8998887642 2388999999988776 789999983
Q ss_pred cccccccCcchHHHHHHHHhccccCCeEEEc
Q 016351 152 WMGYFLLRESMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 152 ~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~ 182 (391)
.. +..+.++.|+|+|||.++.
T Consensus 159 ~~----------~~~~~e~~rvLkpgG~li~ 179 (272)
T PRK11088 159 YA----------PCKAEELARVVKPGGIVIT 179 (272)
T ss_pred cC----------CCCHHHHHhhccCCCEEEE
Confidence 21 1235678899999999985
|
|
| >PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH | Back alignment and domain information |
|---|
Probab=99.10 E-value=3.7e-10 Score=98.48 Aligned_cols=106 Identities=25% Similarity=0.324 Sum_probs=78.9
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC-----CCCcccEEEE
Q 016351 77 FQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV-----LPEKVDVIIS 150 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~-----~~~~~D~Ivs 150 (391)
.++.+|||+-||||.+++.++..|+++|+.||.+ ..+...+++++..++.++++++..|....- ..++||+|+.
T Consensus 41 ~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIfl 120 (183)
T PF03602_consen 41 LEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFL 120 (183)
T ss_dssp HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE
T ss_pred cCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEE
Confidence 5789999999999999999999999999999999 899999999999999888999999965531 2479999999
Q ss_pred ccccccccCcchHHHHHHHHh--ccccCCeEEEcccc
Q 016351 151 EWMGYFLLRESMFDSVICARD--RWLKPTGVMYPSHA 185 (391)
Q Consensus 151 e~~~~~~~~e~~l~~~l~~~~--~~L~~gG~ii~~~~ 185 (391)
++.-..... ...++..+. .+|+++|.++....
T Consensus 121 DPPY~~~~~---~~~~l~~l~~~~~l~~~~~ii~E~~ 154 (183)
T PF03602_consen 121 DPPYAKGLY---YEELLELLAENNLLNEDGLIIIEHS 154 (183)
T ss_dssp --STTSCHH---HHHHHHHHHHTTSEEEEEEEEEEEE
T ss_pred CCCcccchH---HHHHHHHHHHCCCCCCCEEEEEEec
Confidence 984322211 244555554 89999999986643
|
They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A. |
| >PLN02476 O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.09 E-value=6.2e-10 Score=102.60 Aligned_cols=106 Identities=13% Similarity=0.154 Sum_probs=86.6
Q ss_pred CCCCEEEEECCcccHHHHHHHHc-C-CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC--C-----CCccc
Q 016351 77 FQGKTVLDVGTGSGILAIWSAQA-G-ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV--L-----PEKVD 146 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~l~~~~a~~-g-~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~--~-----~~~~D 146 (391)
.+.++|||||+++|..++.+|+. + ..+|+++|.+ ..++.|++++++.|+.++|+++.+|..+.- + .++||
T Consensus 117 ~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD 196 (278)
T PLN02476 117 LGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYD 196 (278)
T ss_pred cCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCC
Confidence 35689999999999999999985 2 3479999999 899999999999999999999999987741 1 25899
Q ss_pred EEEEccccccccCcchHHHHHHHHhccccCCeEEEcccceeE
Q 016351 147 VIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHARMW 188 (391)
Q Consensus 147 ~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~~~~~ 188 (391)
+|+.+.- ......+++.+.++|+|||+++....-+.
T Consensus 197 ~VFIDa~------K~~Y~~y~e~~l~lL~~GGvIV~DNvL~~ 232 (278)
T PLN02476 197 FAFVDAD------KRMYQDYFELLLQLVRVGGVIVMDNVLWH 232 (278)
T ss_pred EEEECCC------HHHHHHHHHHHHHhcCCCcEEEEecCccC
Confidence 9998652 23456778888899999999887655433
|
|
| >COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.6e-09 Score=93.16 Aligned_cols=111 Identities=23% Similarity=0.291 Sum_probs=86.5
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccC--CCCC--cccEEEEc
Q 016351 77 FQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDI--VLPE--KVDVIISE 151 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~--~~~~--~~D~Ivse 151 (391)
..+.++||+-+|||.+++.++..|+.+|+.||.+ ......+++++..++..+++++..|.... .... +||+|+.|
T Consensus 42 i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVflD 121 (187)
T COG0742 42 IEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLVFLD 121 (187)
T ss_pred cCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCCCcccEEEeC
Confidence 6889999999999999999999999999999999 89999999999999888899999998854 2233 49999999
Q ss_pred cccccccCcchHHHHHHHHhccccCCeEEEccccee
Q 016351 152 WMGYFLLRESMFDSVICARDRWLKPTGVMYPSHARM 187 (391)
Q Consensus 152 ~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~~~~ 187 (391)
+.......+.....+.-.-..+|+|+|.++......
T Consensus 122 PPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~~~ 157 (187)
T COG0742 122 PPYAKGLLDKELALLLLEENGWLKPGALIVVEHDKD 157 (187)
T ss_pred CCCccchhhHHHHHHHHHhcCCcCCCcEEEEEeCCC
Confidence 853321111111222222468899999998775543
|
|
| >KOG2904 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.09 E-value=9.5e-10 Score=98.38 Aligned_cols=123 Identities=21% Similarity=0.285 Sum_probs=90.1
Q ss_pred hHHHHHHHHHhcCC---CCCCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEccc
Q 016351 62 RMDAYFNSIFQNKH---HFQGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSV 136 (391)
Q Consensus 62 r~~~~~~~i~~~~~---~~~~~~VLDlGcGtG~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~ 136 (391)
.++.|.+++.+.+. ..++..+||+|||+|.+++.++.. +...|+|||.| .++..|.+|++++++.+++.+++-++
T Consensus 129 ETEE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~m 208 (328)
T KOG2904|consen 129 ETEEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIM 208 (328)
T ss_pred cHHHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEeccc
Confidence 45666666554432 234567999999999999888765 66689999999 89999999999999999999997766
Q ss_pred ccC---C--C-CCcccEEEEccccccccC------------c------------chHHHHHHHHhccccCCeEEEcccc
Q 016351 137 EDI---V--L-PEKVDVIISEWMGYFLLR------------E------------SMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 137 ~~~---~--~-~~~~D~Ivse~~~~~~~~------------e------------~~l~~~l~~~~~~L~~gG~ii~~~~ 185 (391)
+.- + + .+++|+++|++. |.... | ..+..++.-+.|.|+|||.+.+...
T Consensus 209 e~d~~~~~~l~~~~~dllvsNPP-YI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~ 286 (328)
T KOG2904|consen 209 ESDASDEHPLLEGKIDLLVSNPP-YIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELV 286 (328)
T ss_pred ccccccccccccCceeEEecCCC-cccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEec
Confidence 542 1 1 289999999873 32111 1 1234455667899999998876533
|
|
| >PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases | Back alignment and domain information |
|---|
Probab=99.09 E-value=4.5e-10 Score=99.60 Aligned_cols=107 Identities=24% Similarity=0.339 Sum_probs=85.4
Q ss_pred CCCCEEEEECCcccHHHHHHHHc-C-CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC------C-CCccc
Q 016351 77 FQGKTVLDVGTGSGILAIWSAQA-G-ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV------L-PEKVD 146 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~l~~~~a~~-g-~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~------~-~~~~D 146 (391)
.+.++||+|||++|.-++.+|++ + ..+|+.+|.+ ..++.|+++++..|+.++|+++.+|..+.- . .++||
T Consensus 44 ~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD 123 (205)
T PF01596_consen 44 TRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFD 123 (205)
T ss_dssp HT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEE
T ss_pred cCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCcee
Confidence 35689999999999999999986 2 2489999999 899999999999999999999999987741 1 25899
Q ss_pred EEEEccccccccCcchHHHHHHHHhccccCCeEEEcccceeEE
Q 016351 147 VIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHARMWV 189 (391)
Q Consensus 147 ~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~~~~~~ 189 (391)
+|+.+.- ......++..+.++|+|||+++....-+..
T Consensus 124 ~VFiDa~------K~~y~~y~~~~~~ll~~ggvii~DN~l~~G 160 (205)
T PF01596_consen 124 FVFIDAD------KRNYLEYFEKALPLLRPGGVIIADNVLWRG 160 (205)
T ss_dssp EEEEEST------GGGHHHHHHHHHHHEEEEEEEEEETTTGGG
T ss_pred EEEEccc------ccchhhHHHHHhhhccCCeEEEEccccccc
Confidence 9998652 223456777788999999999877665443
|
The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A .... |
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=1e-09 Score=101.27 Aligned_cols=113 Identities=22% Similarity=0.184 Sum_probs=79.4
Q ss_pred HHHHHHHHHhc---CCCCCCCEEEEECCcccHHHHHHHHc-C-CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEccc
Q 016351 63 MDAYFNSIFQN---KHHFQGKTVLDVGTGSGILAIWSAQA-G-ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSV 136 (391)
Q Consensus 63 ~~~~~~~i~~~---~~~~~~~~VLDlGcGtG~l~~~~a~~-g-~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~ 136 (391)
...+..+|..- +...++.+|||||||+|.++..+++. + ..+|+|||++ .|.+.+.+.++.. .+|.++.+|+
T Consensus 114 rSKlaa~i~~g~~~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r---~NI~~I~~Da 190 (293)
T PTZ00146 114 RSKLAAAIIGGVANIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR---PNIVPIIEDA 190 (293)
T ss_pred ccHHHHHHHCCcceeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc---CCCEEEECCc
Confidence 34455566433 33457789999999999999999987 3 3489999999 7665554444332 2388999998
Q ss_pred ccCC----CCCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 137 EDIV----LPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 137 ~~~~----~~~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
+... +.+.+|+|+++.. . ......++.++.++|||||.+++.
T Consensus 191 ~~p~~y~~~~~~vDvV~~Dva--~---pdq~~il~~na~r~LKpGG~~vI~ 236 (293)
T PTZ00146 191 RYPQKYRMLVPMVDVIFADVA--Q---PDQARIVALNAQYFLKNGGHFIIS 236 (293)
T ss_pred cChhhhhcccCCCCEEEEeCC--C---cchHHHHHHHHHHhccCCCEEEEE
Confidence 6531 2268999999763 1 123445666788999999999873
|
|
| >PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.5e-09 Score=108.18 Aligned_cols=113 Identities=22% Similarity=0.231 Sum_probs=85.5
Q ss_pred HHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC-
Q 016351 63 MDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV- 140 (391)
Q Consensus 63 ~~~~~~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~- 140 (391)
++.+.+.+...+...++.+|||+|||+|.+++.+++.+. +|+|+|+| .|++.|+++++.+++.+ ++++++|+.+..
T Consensus 282 ~e~l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~~~-~V~gvD~s~~al~~A~~n~~~~~~~~-v~~~~~d~~~~l~ 359 (443)
T PRK13168 282 NQKMVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQAA-EVVGVEGVEAMVERARENARRNGLDN-VTFYHANLEEDFT 359 (443)
T ss_pred HHHHHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHHHHcCCCc-eEEEEeChHHhhh
Confidence 445555555555555678999999999999999998864 89999999 99999999999999865 999999987632
Q ss_pred ---C-CCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEccc
Q 016351 141 ---L-PEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 141 ---~-~~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~ 184 (391)
+ .++||+|++++.-.. +..+++.+.+ ++|+++++.+.
T Consensus 360 ~~~~~~~~fD~Vi~dPPr~g------~~~~~~~l~~-~~~~~ivyvSC 400 (443)
T PRK13168 360 DQPWALGGFDKVLLDPPRAG------AAEVMQALAK-LGPKRIVYVSC 400 (443)
T ss_pred hhhhhcCCCCEEEECcCCcC------hHHHHHHHHh-cCCCeEEEEEe
Confidence 2 257999999874322 1234455544 58888777553
|
|
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=99.08 E-value=1e-09 Score=85.40 Aligned_cols=100 Identities=33% Similarity=0.387 Sum_probs=78.5
Q ss_pred EEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC--CCcccEEEEccccccc
Q 016351 81 TVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL--PEKVDVIISEWMGYFL 157 (391)
Q Consensus 81 ~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~--~~~~D~Ivse~~~~~~ 157 (391)
+|||+|||+|.++..+++....+++++|.+ .++..+++.....+ ..+++++.+|+.+... ++++|+|++..+.+..
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~ 79 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALL-ADNVEVLKGDAEELPPEADESFDVIISDPPLHHL 79 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhccc-ccceEEEEcChhhhccccCCceEEEEEccceeeh
Confidence 489999999999998888556689999999 78888876444433 3459999999988763 4789999986643332
Q ss_pred cCcchHHHHHHHHhccccCCeEEEcc
Q 016351 158 LRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 158 ~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
......++..+.+.|+++|.+++.
T Consensus 80 --~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 80 --VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred --hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 345778889999999999999865
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >COG4122 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.06 E-value=9.8e-10 Score=97.44 Aligned_cols=107 Identities=20% Similarity=0.336 Sum_probs=88.1
Q ss_pred CCCCEEEEECCcccHHHHHHHHc-C-CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEE-cccccCC---CCCcccEEE
Q 016351 77 FQGKTVLDVGTGSGILAIWSAQA-G-ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIE-GSVEDIV---LPEKVDVII 149 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~l~~~~a~~-g-~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~-~d~~~~~---~~~~~D~Iv 149 (391)
...++||+||++.|.-++.+|.. . ..+++.||.+ ++++.|++++++.|+.++|+++. +|..+.- ..++||+|+
T Consensus 58 ~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDliF 137 (219)
T COG4122 58 SGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDLVF 137 (219)
T ss_pred cCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccEEE
Confidence 46789999999999999999987 3 4589999999 99999999999999999999999 5876642 248999999
Q ss_pred EccccccccCcchHHHHHHHHhccccCCeEEEcccceeEE
Q 016351 150 SEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHARMWV 189 (391)
Q Consensus 150 se~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~~~~~~ 189 (391)
.+. .....+.+++.+.++|+|||+++....-+..
T Consensus 138 IDa------dK~~yp~~le~~~~lLr~GGliv~DNvl~~G 171 (219)
T COG4122 138 IDA------DKADYPEYLERALPLLRPGGLIVADNVLFGG 171 (219)
T ss_pred EeC------ChhhCHHHHHHHHHHhCCCcEEEEeecccCC
Confidence 754 1224567899999999999999877664443
|
|
| >PHA03411 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=1e-09 Score=100.28 Aligned_cols=100 Identities=22% Similarity=0.207 Sum_probs=74.1
Q ss_pred CCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEccccc
Q 016351 78 QGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMGY 155 (391)
Q Consensus 78 ~~~~VLDlGcGtG~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~~D~Ivse~~~~ 155 (391)
...+|||+|||+|.+++.+++. +..+|+++|++ .|++.++++.. +++++++|+.++...++||+|++++.-.
T Consensus 64 ~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~~------~v~~v~~D~~e~~~~~kFDlIIsNPPF~ 137 (279)
T PHA03411 64 CTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLP------EAEWITSDVFEFESNEKFDVVISNPPFG 137 (279)
T ss_pred cCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCc------CCEEEECchhhhcccCCCcEEEEcCCcc
Confidence 3468999999999999888775 34589999999 89999887531 3899999999876567899999987433
Q ss_pred cccCcc---------------h--HHHHHHHHhccccCCeEEEcc
Q 016351 156 FLLRES---------------M--FDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 156 ~~~~e~---------------~--l~~~l~~~~~~L~~gG~ii~~ 183 (391)
....+. . +..++.....+|+|+|.+++.
T Consensus 138 ~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~ 182 (279)
T PHA03411 138 KINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFA 182 (279)
T ss_pred ccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEE
Confidence 322110 0 345566667788888866544
|
|
| >TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.4e-09 Score=104.16 Aligned_cols=100 Identities=10% Similarity=0.078 Sum_probs=78.4
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC--CCcccEEEEccc
Q 016351 77 FQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL--PEKVDVIISEWM 153 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~--~~~~D~Ivse~~ 153 (391)
.++.+|||+|||+|.+++.++..+. +|+|||++ .+++.|+++++.+++. +++++.+|+.++.. .++||+|+.++.
T Consensus 232 ~~~~~vLDL~cG~G~~~l~la~~~~-~v~~vE~~~~av~~a~~N~~~~~~~-~~~~~~~d~~~~~~~~~~~~D~vi~DPP 309 (374)
T TIGR02085 232 IPVTQMWDLFCGVGGFGLHCAGPDT-QLTGIEIESEAIACAQQSAQMLGLD-NLSFAALDSAKFATAQMSAPELVLVNPP 309 (374)
T ss_pred cCCCEEEEccCCccHHHHHHhhcCC-eEEEEECCHHHHHHHHHHHHHcCCC-cEEEEECCHHHHHHhcCCCCCEEEECCC
Confidence 4567999999999999999998774 89999999 9999999999999986 59999999977532 256999999986
Q ss_pred cccccCcchHHHHHHHHhccccCCeEEEccc
Q 016351 154 GYFLLRESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 154 ~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~ 184 (391)
-. . ....+++.+.+ ++|+++++.+.
T Consensus 310 r~-G----~~~~~l~~l~~-~~p~~ivyvsc 334 (374)
T TIGR02085 310 RR-G----IGKELCDYLSQ-MAPKFILYSSC 334 (374)
T ss_pred CC-C----CcHHHHHHHHh-cCCCeEEEEEe
Confidence 32 2 22344555543 68888777553
|
This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA. |
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=99.01 E-value=4.5e-09 Score=99.02 Aligned_cols=112 Identities=20% Similarity=0.221 Sum_probs=84.2
Q ss_pred CCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHc--CC-CCcEEEEEcccccCC--C-CCcccEEE
Q 016351 78 QGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKAN--NL-QDVVEVIEGSVEDIV--L-PEKVDVII 149 (391)
Q Consensus 78 ~~~~VLDlGcGtG~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~--~~-~~~v~~i~~d~~~~~--~-~~~~D~Iv 149 (391)
+.++||+||||.|.++..+++. +..+|+.||++ .+++.|++.+... ++ ..+++++.+|....- . .++||+|+
T Consensus 91 ~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvIi 170 (308)
T PLN02366 91 NPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAII 170 (308)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEEE
Confidence 4689999999999999999988 35689999999 8999999987643 23 347999999986642 2 36899999
Q ss_pred EccccccccCc-chHHHHHHHHhccccCCeEEEcccceeEE
Q 016351 150 SEWMGYFLLRE-SMFDSVICARDRWLKPTGVMYPSHARMWV 189 (391)
Q Consensus 150 se~~~~~~~~e-~~l~~~l~~~~~~L~~gG~ii~~~~~~~~ 189 (391)
++......... -.-..+++.+++.|+|||+++......+.
T Consensus 171 ~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~~s~~~ 211 (308)
T PLN02366 171 VDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQAESMWL 211 (308)
T ss_pred EcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECcCCccc
Confidence 97644322111 11346788999999999999876554443
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=99.01 E-value=2e-09 Score=115.21 Aligned_cols=133 Identities=20% Similarity=0.225 Sum_probs=95.3
Q ss_pred hHhHHHHHHHHHhcCC-CCCCCEEEEECCcccHHHHHHHHcC-CCeEEEEech-HHHHHHHHHHHHcCCC----------
Q 016351 60 RVRMDAYFNSIFQNKH-HFQGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEAT-KMSDHARTLVKANNLQ---------- 126 (391)
Q Consensus 60 ~~r~~~~~~~i~~~~~-~~~~~~VLDlGcGtG~l~~~~a~~g-~~~V~avD~s-~~~~~a~~~~~~~~~~---------- 126 (391)
...++.+.+.+..... ..++.+|||+|||+|.+++.+++.. ..+|+|+|+| .+++.|++|++.|+++
T Consensus 99 RpeTE~lve~L~~~~~~~~~~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~ 178 (1082)
T PLN02672 99 EDWSFTFYEGLNRHPDSIFRDKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGE 178 (1082)
T ss_pred chhHHHHHHHHHhcccccCCCCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccc
Confidence 3445666665433211 1245789999999999999998874 4589999999 9999999999987643
Q ss_pred -----CcEEEEEcccccCCCC--CcccEEEEccccccccC---------------------------------c---chH
Q 016351 127 -----DVVEVIEGSVEDIVLP--EKVDVIISEWMGYFLLR---------------------------------E---SMF 163 (391)
Q Consensus 127 -----~~v~~i~~d~~~~~~~--~~~D~Ivse~~~~~~~~---------------------------------e---~~l 163 (391)
++|+++++|+.+.... .+||+|||++. |.... + ...
T Consensus 179 ~~~l~~rV~f~~sDl~~~~~~~~~~fDlIVSNPP-YI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~y 257 (1082)
T PLN02672 179 GKTLLDRVEFYESDLLGYCRDNNIELDRIVGCIP-QILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLI 257 (1082)
T ss_pred cccccccEEEEECchhhhccccCCceEEEEECCC-cCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHH
Confidence 4699999998875322 36999999873 21110 0 113
Q ss_pred HHHHHHHhccccCCeEEEcccceeEEeecc
Q 016351 164 DSVICARDRWLKPTGVMYPSHARMWVAPIR 193 (391)
Q Consensus 164 ~~~l~~~~~~L~~gG~ii~~~~~~~~~~~~ 193 (391)
..++....++|+|||.+++....-....+.
T Consensus 258 r~i~~~a~~~L~pgG~l~lEiG~~q~~~v~ 287 (1082)
T PLN02672 258 ARAVEEGISVIKPMGIMIFNMGGRPGQAVC 287 (1082)
T ss_pred HHHHHHHHHhccCCCEEEEEECccHHHHHH
Confidence 566777789999999999887765554443
|
|
| >PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.7e-09 Score=93.79 Aligned_cols=103 Identities=30% Similarity=0.476 Sum_probs=70.9
Q ss_pred CCCCCEEEEECCcccHHHHHHHHc-CCCeEEEEechHHHHHHHHHHHHcC--CCCcEEEEEcccccC-----CCCCcccE
Q 016351 76 HFQGKTVLDVGTGSGILAIWSAQA-GARKVYAVEATKMSDHARTLVKANN--LQDVVEVIEGSVEDI-----VLPEKVDV 147 (391)
Q Consensus 76 ~~~~~~VLDlGcGtG~l~~~~a~~-g~~~V~avD~s~~~~~a~~~~~~~~--~~~~v~~i~~d~~~~-----~~~~~~D~ 147 (391)
..++++|||||||+|+.++.+++. +..+|+..|.++.++.++.+++.|+ ...++.+...|-.+- ..+.+||+
T Consensus 43 ~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~ 122 (173)
T PF10294_consen 43 LFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNEVLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFDV 122 (173)
T ss_dssp GTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S-HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBSE
T ss_pred hcCCceEEEECCccchhHHHHHhccCCceEEEeccchhhHHHHHHHHhccccccccccCcEEEecCcccccccccccCCE
Confidence 457799999999999999999999 7779999999988899999999988 566788888765431 11268999
Q ss_pred EEEccccccccCcchHHHHHHHHhccccCCeEEE
Q 016351 148 IISEWMGYFLLRESMFDSVICARDRWLKPTGVMY 181 (391)
Q Consensus 148 Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii 181 (391)
|++.-+ +..+...+.++..+.++|+++|.++
T Consensus 123 IlasDv---~Y~~~~~~~L~~tl~~ll~~~~~vl 153 (173)
T PF10294_consen 123 ILASDV---LYDEELFEPLVRTLKRLLKPNGKVL 153 (173)
T ss_dssp EEEES-----S-GGGHHHHHHHHHHHBTT-TTEE
T ss_pred EEEecc---cchHHHHHHHHHHHHHHhCCCCEEE
Confidence 997222 3335578889999999999998844
|
They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A. |
| >KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.99 E-value=2e-09 Score=93.33 Aligned_cols=99 Identities=17% Similarity=0.157 Sum_probs=74.1
Q ss_pred CCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEccccc-CCCC-CcccEEEEcccc
Q 016351 78 QGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVED-IVLP-EKVDVIISEWMG 154 (391)
Q Consensus 78 ~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~-~~~~-~~~D~Ivse~~~ 154 (391)
+..-|||||||||+.+..+...|. ..+|+|+| .|++.|.+.--+ -.++.+|+-+ +++. +.||-+||-..-
T Consensus 50 ~~~~iLDIGCGsGLSg~vL~~~Gh-~wiGvDiSpsML~~a~~~e~e------gdlil~DMG~GlpfrpGtFDg~ISISAv 122 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSVLSDSGH-QWIGVDISPSMLEQAVERELE------GDLILCDMGEGLPFRPGTFDGVISISAV 122 (270)
T ss_pred CCcEEEEeccCCCcchheeccCCc-eEEeecCCHHHHHHHHHhhhh------cCeeeeecCCCCCCCCCccceEEEeeee
Confidence 467899999999999999998885 79999999 999999862211 3678888865 4444 899999883322
Q ss_pred ccccCc--------chHHHHHHHHhccccCCeEEEcc
Q 016351 155 YFLLRE--------SMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 155 ~~~~~e--------~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
..+++. ..+..++..++.+|++|+..++.
T Consensus 123 QWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~Q 159 (270)
T KOG1541|consen 123 QWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQ 159 (270)
T ss_pred eeecccCccccChHHHHHHHhhhhhhhhccCceeEEE
Confidence 223221 23566788899999999998865
|
|
| >PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA [] | Back alignment and domain information |
|---|
Probab=98.99 E-value=3.4e-09 Score=96.29 Aligned_cols=107 Identities=28% Similarity=0.298 Sum_probs=82.2
Q ss_pred HHHHhcCCCCCCCEEEEECCcccHHHHHHHHc-C-CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC---
Q 016351 68 NSIFQNKHHFQGKTVLDVGTGSGILAIWSAQA-G-ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL--- 141 (391)
Q Consensus 68 ~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~-g-~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~--- 141 (391)
..|...+...++.+|||.|+|+|.++..++++ | ..+|+..|.. +.++.|+++++.+++.++|++.+.|+.+-.+
T Consensus 30 ~~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~ 109 (247)
T PF08704_consen 30 SYILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDEE 109 (247)
T ss_dssp HHHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--STT
T ss_pred HHHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceeccccccc
Confidence 45667777889999999999999999999987 3 4599999999 9999999999999999889999999965322
Q ss_pred -CCcccEEEEccccccccCcchHHHHHHHHhccc-cCCeEEEc
Q 016351 142 -PEKVDVIISEWMGYFLLRESMFDSVICARDRWL-KPTGVMYP 182 (391)
Q Consensus 142 -~~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L-~~gG~ii~ 182 (391)
...+|.|+.|+.. +...+..+.+.| ++||++..
T Consensus 110 ~~~~~DavfLDlp~--------Pw~~i~~~~~~L~~~gG~i~~ 144 (247)
T PF08704_consen 110 LESDFDAVFLDLPD--------PWEAIPHAKRALKKPGGRICC 144 (247)
T ss_dssp -TTSEEEEEEESSS--------GGGGHHHHHHHE-EEEEEEEE
T ss_pred ccCcccEEEEeCCC--------HHHHHHHHHHHHhcCCceEEE
Confidence 3679999987643 223466677889 89998763
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A. |
| >TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA | Back alignment and domain information |
|---|
Probab=98.98 E-value=5.9e-09 Score=103.69 Aligned_cols=113 Identities=19% Similarity=0.244 Sum_probs=83.7
Q ss_pred HHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC-
Q 016351 63 MDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV- 140 (391)
Q Consensus 63 ~~~~~~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~- 140 (391)
.+.+.+.+.+.+...++.+|||+|||+|.+++.+++.+. +|+|+|++ .+++.|+++++.+++.+ ++++.+|+.+..
T Consensus 277 ~~~l~~~~~~~l~~~~~~~vLDl~cG~G~~sl~la~~~~-~V~~vE~~~~av~~a~~n~~~~~~~n-v~~~~~d~~~~l~ 354 (431)
T TIGR00479 277 NEKLVDRALEALELQGEELVVDAYCGVGTFTLPLAKQAK-SVVGIEVVPESVEKAQQNAELNGIAN-VEFLAGTLETVLP 354 (431)
T ss_pred HHHHHHHHHHHhccCCCCEEEEcCCCcCHHHHHHHHhCC-EEEEEEcCHHHHHHHHHHHHHhCCCc-eEEEeCCHHHHHH
Confidence 334444455554445568999999999999999998754 89999999 99999999999999864 999999987631
Q ss_pred ---C-CCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 141 ---L-PEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 141 ---~-~~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
. ..+||+|+.++.-.. ....+++.+.+ ++|+++++.+
T Consensus 355 ~~~~~~~~~D~vi~dPPr~G-----~~~~~l~~l~~-l~~~~ivyvs 395 (431)
T TIGR00479 355 KQPWAGQIPDVLLLDPPRKG-----CAAEVLRTIIE-LKPERIVYVS 395 (431)
T ss_pred HHHhcCCCCCEEEECcCCCC-----CCHHHHHHHHh-cCCCEEEEEc
Confidence 1 246999999875322 12345555543 7888877654
|
This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. |
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=98.98 E-value=6.2e-09 Score=96.90 Aligned_cols=108 Identities=16% Similarity=0.138 Sum_probs=80.6
Q ss_pred CCCEEEEECCcccHHHHHHHHcC-CCeEEEEech-HHHHHHHHHHHHcC--C-CCcEEEEEcccccCC--CCCcccEEEE
Q 016351 78 QGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEAT-KMSDHARTLVKANN--L-QDVVEVIEGSVEDIV--LPEKVDVIIS 150 (391)
Q Consensus 78 ~~~~VLDlGcGtG~l~~~~a~~g-~~~V~avD~s-~~~~~a~~~~~~~~--~-~~~v~~i~~d~~~~~--~~~~~D~Ivs 150 (391)
.+++||+||||+|.++..+++.+ ..+|+++|++ .+++.|++.+...+ + ..+++++.+|..+.- .+++||+|++
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi~ 151 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVIIV 151 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEEE
Confidence 34699999999999998888875 6689999999 89999998875432 1 246889998886631 2478999999
Q ss_pred ccccccccCcc-hHHHHHHHHhccccCCeEEEcccc
Q 016351 151 EWMGYFLLRES-MFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 151 e~~~~~~~~e~-~l~~~l~~~~~~L~~gG~ii~~~~ 185 (391)
+.......... ....+++.+.+.|+|||+++....
T Consensus 152 D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~~ 187 (270)
T TIGR00417 152 DSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQSE 187 (270)
T ss_pred eCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEcCC
Confidence 76432221111 135678889999999999987644
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >PLN02589 caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.96 E-value=3.2e-09 Score=96.65 Aligned_cols=107 Identities=13% Similarity=0.148 Sum_probs=86.1
Q ss_pred CCCCEEEEECCcccHHHHHHHHc-C-CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC--C------CCcc
Q 016351 77 FQGKTVLDVGTGSGILAIWSAQA-G-ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV--L------PEKV 145 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~l~~~~a~~-g-~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~--~------~~~~ 145 (391)
.+.++||+||+++|.-++.+|+. + ..+|+.+|.+ +.++.|+++++..|+.++|+++.++..+.- + .++|
T Consensus 78 ~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~f 157 (247)
T PLN02589 78 INAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTF 157 (247)
T ss_pred hCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCcc
Confidence 35689999999999999999876 2 2489999999 899999999999999999999999987741 1 2589
Q ss_pred cEEEEccccccccCcchHHHHHHHHhccccCCeEEEcccceeEE
Q 016351 146 DVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHARMWV 189 (391)
Q Consensus 146 D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~~~~~~ 189 (391)
|+|+.+.- ......+++.+.++|+|||+++....-+..
T Consensus 158 D~iFiDad------K~~Y~~y~~~~l~ll~~GGviv~DNvl~~G 195 (247)
T PLN02589 158 DFIFVDAD------KDNYINYHKRLIDLVKVGGVIGYDNTLWNG 195 (247)
T ss_pred cEEEecCC------HHHhHHHHHHHHHhcCCCeEEEEcCCCCCC
Confidence 99998642 223456777788999999998876654443
|
|
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=98.95 E-value=3.7e-09 Score=93.01 Aligned_cols=97 Identities=26% Similarity=0.364 Sum_probs=69.0
Q ss_pred CCCCCEEEEECCcccHHHHHHHHc--CCCeEEEEechHHHHHHHHHHHHcCCCCcEEEEEcccccCC--------CC-Cc
Q 016351 76 HFQGKTVLDVGTGSGILAIWSAQA--GARKVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVEDIV--------LP-EK 144 (391)
Q Consensus 76 ~~~~~~VLDlGcGtG~l~~~~a~~--g~~~V~avD~s~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~--------~~-~~ 144 (391)
..++.+|||+|||+|.++..+++. +..+|+++|++++. .. ..++++++|+.+.. .+ ++
T Consensus 30 i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~----------~~-~~i~~~~~d~~~~~~~~~l~~~~~~~~ 98 (188)
T TIGR00438 30 IKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK----------PI-ENVDFIRGDFTDEEVLNKIRERVGDDK 98 (188)
T ss_pred cCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc----------cC-CCceEEEeeCCChhHHHHHHHHhCCCC
Confidence 456789999999999999888776 34479999999432 12 23788998987642 23 67
Q ss_pred ccEEEEcccccc-----ccCc---chHHHHHHHHhccccCCeEEEcc
Q 016351 145 VDVIISEWMGYF-----LLRE---SMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 145 ~D~Ivse~~~~~-----~~~e---~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
+|+|+++...+. ..+. .....++..+.++|+|||.++..
T Consensus 99 ~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~ 145 (188)
T TIGR00438 99 VDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVK 145 (188)
T ss_pred ccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEE
Confidence 999999652211 1100 12367888899999999998864
|
|
| >PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes | Back alignment and domain information |
|---|
Probab=98.95 E-value=6.8e-09 Score=98.72 Aligned_cols=106 Identities=22% Similarity=0.226 Sum_probs=79.0
Q ss_pred CCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHc---------CCCCcEEEEEcccccCC-----CC
Q 016351 78 QGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKAN---------NLQDVVEVIEGSVEDIV-----LP 142 (391)
Q Consensus 78 ~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~---------~~~~~v~~i~~d~~~~~-----~~ 142 (391)
++.+|||||||-|.-..-..+++.++++|+|++ ..++.|+++.+.. ...-...++.+|..... .+
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~ 141 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPP 141 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSS
T ss_pred CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccc
Confidence 678999999999887777777888899999999 8899998888321 11123678888875431 12
Q ss_pred --CcccEEEEc-cccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 143 --EKVDVIISE-WMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 143 --~~~D~Ivse-~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
.+||+|-|- .++|....+.....++..+...|+|||+||-.
T Consensus 142 ~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT 185 (331)
T PF03291_consen 142 RSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGT 185 (331)
T ss_dssp TTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred cCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 599999994 47888888888889999999999999999843
|
The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A. |
| >PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family | Back alignment and domain information |
|---|
Probab=98.94 E-value=5.9e-09 Score=91.82 Aligned_cols=106 Identities=24% Similarity=0.289 Sum_probs=76.1
Q ss_pred HHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCC
Q 016351 66 YFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPE 143 (391)
Q Consensus 66 ~~~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~ 143 (391)
-+..|... ..++.+|||+.||.|.+++.+|+. .+++|+|+|++ ..++.++++++.|++.++|.++++|.+++...+
T Consensus 91 Er~Ri~~~--v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~~~ 168 (200)
T PF02475_consen 91 ERRRIANL--VKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLPEG 168 (200)
T ss_dssp HHHHHHTC----TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG---TT
T ss_pred HHHHHHhc--CCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcCcc
Confidence 33445544 356799999999999999999984 45589999999 899999999999999999999999999986568
Q ss_pred cccEEEEccccccccCcchHHHHHHHHhccccCCeEE
Q 016351 144 KVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVM 180 (391)
Q Consensus 144 ~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~i 180 (391)
.+|-|+++..... ..++.++..++++||++
T Consensus 169 ~~drvim~lp~~~-------~~fl~~~~~~~~~~g~i 198 (200)
T PF02475_consen 169 KFDRVIMNLPESS-------LEFLDAALSLLKEGGII 198 (200)
T ss_dssp -EEEEEE--TSSG-------GGGHHHHHHHEEEEEEE
T ss_pred ccCEEEECChHHH-------HHHHHHHHHHhcCCcEE
Confidence 9999998654322 23566777889999876
|
Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A. |
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=98.94 E-value=6.3e-09 Score=98.69 Aligned_cols=108 Identities=18% Similarity=0.174 Sum_probs=79.5
Q ss_pred CCCCEEEEECCcccHHHHHHHHcC-CCeEEEEech-HHHHHHHHHH-----HHcCC-CCcEEEEEcccccCC--CCCccc
Q 016351 77 FQGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEAT-KMSDHARTLV-----KANNL-QDVVEVIEGSVEDIV--LPEKVD 146 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~l~~~~a~~g-~~~V~avD~s-~~~~~a~~~~-----~~~~~-~~~v~~i~~d~~~~~--~~~~~D 146 (391)
...++||+||||+|..+..+++.. ..+|++||++ .+++.|++.. ....+ ..+++++.+|..++- ..++||
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YD 228 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYD 228 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCcc
Confidence 345799999999999888888874 5689999999 8999999621 11222 357999999998852 237899
Q ss_pred EEEEcccccccc--CcchHHHHHHHHhccccCCeEEEccc
Q 016351 147 VIISEWMGYFLL--RESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 147 ~Ivse~~~~~~~--~e~~l~~~l~~~~~~L~~gG~ii~~~ 184 (391)
+|++++...... ..-.-..++..+++.|+|||+++...
T Consensus 229 VIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs 268 (374)
T PRK01581 229 VIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQS 268 (374)
T ss_pred EEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEec
Confidence 999986432211 11112567889999999999987653
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=5.6e-09 Score=105.81 Aligned_cols=110 Identities=24% Similarity=0.231 Sum_probs=81.4
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCC-CeEEEEech-HHHHHHHHHH--HH---cCCC-CcEEEEEcccccCC--CCCccc
Q 016351 77 FQGKTVLDVGTGSGILAIWSAQAGA-RKVYAVEAT-KMSDHARTLV--KA---NNLQ-DVVEVIEGSVEDIV--LPEKVD 146 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~l~~~~a~~g~-~~V~avD~s-~~~~~a~~~~--~~---~~~~-~~v~~i~~d~~~~~--~~~~~D 146 (391)
.++++|||||||+|..+..+++.+. .+|++||++ ++++.++++. .. ..++ .+++++.+|.++.. .+++||
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fD 375 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFD 375 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCC
Confidence 3468999999999999999988854 699999999 9999999842 21 1232 46999999998742 347999
Q ss_pred EEEEccccccccC--cchHHHHHHHHhccccCCeEEEcccce
Q 016351 147 VIISEWMGYFLLR--ESMFDSVICARDRWLKPTGVMYPSHAR 186 (391)
Q Consensus 147 ~Ivse~~~~~~~~--e~~l~~~l~~~~~~L~~gG~ii~~~~~ 186 (391)
+|+++........ .-.-..+++.+++.|+|||+++.+...
T Consensus 376 vIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~ 417 (521)
T PRK03612 376 VIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTS 417 (521)
T ss_pred EEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEecCC
Confidence 9999864322111 111245788899999999999876543
|
|
| >KOG2899 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.92 E-value=6.5e-09 Score=91.50 Aligned_cols=106 Identities=20% Similarity=0.380 Sum_probs=74.9
Q ss_pred CCCCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcC-----CC----------------------
Q 016351 76 HFQGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANN-----LQ---------------------- 126 (391)
Q Consensus 76 ~~~~~~VLDlGcGtG~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~-----~~---------------------- 126 (391)
...++.+|||||.+|.+++.+|+. |+..|.|+|++ ..++.|+++++..- ..
T Consensus 56 ~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~ 135 (288)
T KOG2899|consen 56 WFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADR 135 (288)
T ss_pred ccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccccc
Confidence 456789999999999999999997 88899999999 88999999876321 00
Q ss_pred --------------CcEEEEEcccccCCCCCcccEEEE----ccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 127 --------------DVVEVIEGSVEDIVLPEKVDVIIS----EWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 127 --------------~~v~~i~~d~~~~~~~~~~D~Ivs----e~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
.+..+-..|+.+.. ..+||+|+| -|++-....+ -+..++..+.++|.|||++|..
T Consensus 136 a~t~~~p~n~~f~~~n~vle~~dfl~~~-~~~fDiIlcLSiTkWIHLNwgD~-GL~~ff~kis~ll~pgGiLvvE 208 (288)
T KOG2899|consen 136 AFTTDFPDNVWFQKENYVLESDDFLDMI-QPEFDIILCLSITKWIHLNWGDD-GLRRFFRKISSLLHPGGILVVE 208 (288)
T ss_pred cccccCCcchhcccccEEEecchhhhhc-cccccEEEEEEeeeeEecccccH-HHHHHHHHHHHhhCcCcEEEEc
Confidence 01111112222111 268999998 3332222333 4778999999999999999854
|
|
| >PTZ00338 dimethyladenosine transferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.2e-08 Score=95.54 Aligned_cols=83 Identities=27% Similarity=0.320 Sum_probs=69.5
Q ss_pred HHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccE
Q 016351 69 SIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDV 147 (391)
Q Consensus 69 ~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~~D~ 147 (391)
.|.......++.+|||||||+|.++..+++.+. +|+|+|++ .+++.+++++...+..++++++++|+.+..+ ..+|+
T Consensus 27 ~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~~~-~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~-~~~d~ 104 (294)
T PTZ00338 27 KIVEKAAIKPTDTVLEIGPGTGNLTEKLLQLAK-KVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEF-PYFDV 104 (294)
T ss_pred HHHHhcCCCCcCEEEEecCchHHHHHHHHHhCC-cEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhcc-cccCE
Confidence 344445556778999999999999999998865 79999999 9999999999887755679999999988765 47899
Q ss_pred EEEccc
Q 016351 148 IISEWM 153 (391)
Q Consensus 148 Ivse~~ 153 (391)
|++++.
T Consensus 105 VvaNlP 110 (294)
T PTZ00338 105 CVANVP 110 (294)
T ss_pred EEecCC
Confidence 999864
|
|
| >KOG3010 consensus Methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.9e-09 Score=94.98 Aligned_cols=97 Identities=22% Similarity=0.265 Sum_probs=71.0
Q ss_pred CEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC-CCcccEEEE-cccccc
Q 016351 80 KTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL-PEKVDVIIS-EWMGYF 156 (391)
Q Consensus 80 ~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~-~~~~D~Ivs-e~~~~~ 156 (391)
+.++|+|||+|.-+..+|.. +++|+|+|+| .|++.|++.....-.....++...++.++.- ++++|+|+| +.++.+
T Consensus 35 ~~a~DvG~G~Gqa~~~iae~-~k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~HWF 113 (261)
T KOG3010|consen 35 RLAWDVGTGNGQAARGIAEH-YKEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQAVHWF 113 (261)
T ss_pred ceEEEeccCCCcchHHHHHh-hhhheeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhhhHHhh
Confidence 48999999999777778877 6689999999 9999988765443332234555555555543 389999998 333322
Q ss_pred ccCcchHHHHHHHHhccccCCe-EEEc
Q 016351 157 LLRESMFDSVICARDRWLKPTG-VMYP 182 (391)
Q Consensus 157 ~~~e~~l~~~l~~~~~~L~~gG-~ii~ 182 (391)
+++.++..++|+|+++| ++.+
T Consensus 114 -----dle~fy~~~~rvLRk~Gg~iav 135 (261)
T KOG3010|consen 114 -----DLERFYKEAYRVLRKDGGLIAV 135 (261)
T ss_pred -----chHHHHHHHHHHcCCCCCEEEE
Confidence 57889999999999987 5543
|
|
| >TIGR02081 metW methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.4e-08 Score=89.77 Aligned_cols=89 Identities=20% Similarity=0.244 Sum_probs=64.8
Q ss_pred CCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEccccc-CC-CC-CcccEEEEccc
Q 016351 78 QGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVED-IV-LP-EKVDVIISEWM 153 (391)
Q Consensus 78 ~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~-~~-~~-~~~D~Ivse~~ 153 (391)
++.+|||||||+|.++..+++.....++|+|++ +++..+++ . .++++++|+.+ +. ++ ++||+|+|...
T Consensus 13 ~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~----~----~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~ 84 (194)
T TIGR02081 13 PGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVA----R----GVNVIQGDLDEGLEAFPDKSFDYVILSQT 84 (194)
T ss_pred CCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHH----c----CCeEEEEEhhhcccccCCCCcCEEEEhhH
Confidence 567999999999999988887644478999999 88877753 1 27888888876 32 33 68999999543
Q ss_pred cccccCcchHHHHHHHHhccccCC
Q 016351 154 GYFLLRESMFDSVICARDRWLKPT 177 (391)
Q Consensus 154 ~~~~~~e~~l~~~l~~~~~~L~~g 177 (391)
.+. -.+...+++++.+.++++
T Consensus 85 l~~---~~d~~~~l~e~~r~~~~~ 105 (194)
T TIGR02081 85 LQA---TRNPEEILDEMLRVGRHA 105 (194)
T ss_pred hHc---CcCHHHHHHHHHHhCCeE
Confidence 222 234667788777766653
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. |
| >KOG1501 consensus Arginine N-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.84 E-value=8.1e-09 Score=97.77 Aligned_cols=220 Identities=15% Similarity=0.157 Sum_probs=136.7
Q ss_pred eEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEcccc--ccccCcc-hHHHHHHHHhccccCCe
Q 016351 103 KVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMG--YFLLRES-MFDSVICARDRWLKPTG 178 (391)
Q Consensus 103 ~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~~D~Ivse~~~--~~~~~e~-~l~~~l~~~~~~L~~gG 178 (391)
+++.++.+ ..-....++.-...+.+ ++.+..=+ ..+.+.|+++.+++. ....+.. .+-.....+...+.++.
T Consensus 391 ~r~~~~l~e~~r~if~~~~~~~Klsn-~e~vp~i~---t~~ds~~ivl~epf~~tam~PW~~L~F~Y~~~~l~~~~G~~~ 466 (636)
T KOG1501|consen 391 KRIQARLSERERVIFNQRLIQLKLSN-NESVPAIM---TSPDSPDIVLAEPFVKTAMNPWNHLRFLYDVEVLKMMHGDEL 466 (636)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcc-cccchhhh---cCCCCCceeecchhhhhccCchhheeeeeeHHHHHHhcCCce
Confidence 45555666 33333344444444433 33333222 223456877777642 1222221 12233455677889999
Q ss_pred EEEcccceeEEeecccCcCccchhhccccccchhhhhhcCccccccccccCCCcchhhh---hhhhcccCceeecCCCCc
Q 016351 179 VMYPSHARMWVAPIRSGLGDQKQQDYEGALDDWYSFLKETKTYYGVDMSVLTKPFSEEQ---KKYYLQTSLWSNLHPDQV 255 (391)
Q Consensus 179 ~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~g~dl~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 255 (391)
.+.|..+.+.+.|.. +....++..+...+.|||+++|.++..... +.....+++|+ ++...
T Consensus 467 ~V~P~~~~L~Ai~~k--------------F~DL~~I~S~~G~~~GFDl~~~Dei~~kA~~~~da~~~E~~LWE--Y~~~~ 530 (636)
T KOG1501|consen 467 RVEPHMGVLKAIPEK--------------FEDLQNIASDVGTVNGFDLSFFDEISTKARTATDAIVDEQSLWE--YAGIV 530 (636)
T ss_pred eeccccchhhhhhHH--------------HHHHHhhcccccccccceeeehhHHHHhhchhhhhhhccchhhh--ccCee
Confidence 999999998887663 223345666778999999999966543220 01111246666 56788
Q ss_pred cccceeEEEEEcCCCCcccccceeeEEEEEEEecCceeEEEEEEEEeeecCCCCCCCCCcEEEecCCC-------CCCCC
Q 016351 256 IGTAAVVKNIDCSTATVDDIREVRSKFLSSIRGEGTRLCGFSGWFDVHFRGSTEDPAQQEIELTTAPS-------TYNGT 328 (391)
Q Consensus 256 ls~p~~~~~~dl~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~wf~~~l~~~~~~~~~~~i~lst~P~-------~~~~~ 328 (391)
+++|.++++|++......+ +..+.+. +.+.-||+.+|++++|.+ +.|||+-. ..+..
T Consensus 531 ~~d~~eIL~F~~~~~V~~Q------k~~V~i~-~~~sS~A~~mWME~~~~~---------~nLSTGLL~~~~~G~~~WN~ 594 (636)
T KOG1501|consen 531 KGDAVEILRFPIDGRVSSQ------KCVVNID-NMSSSNAIPMWMEWEFGG---------INLSTGLLSISSAGVPEWNK 594 (636)
T ss_pred cCCceeEEEeccCCccccc------eeEEEcc-CCCccccceeeEEeeeCc---------eeecccceeecCCCCcccCc
Confidence 9999999999998654432 3556667 999999999999999964 56665431 14567
Q ss_pred CccceEEecCCccccCCCCEEEEEEEEEeCCC
Q 016351 329 HWGQQVFLFRPSVRVSEGDDLNVSFSMTRSKE 360 (391)
Q Consensus 329 hW~q~~~~l~~p~~v~~g~~l~~~~~~~~~~~ 360 (391)
|.||+||++..-+ .-.-++.+.+.|.++..
T Consensus 595 ~~KQ~VYF~~t~L--~~~ksl~~~~~F~~~TG 624 (636)
T KOG1501|consen 595 GYKQGVYFPITAL--RNDKSLCLHALFDKSTG 624 (636)
T ss_pred cccceeEEEhHHh--CCCceEEEEEEEcCCCC
Confidence 9999999874433 33346777777766554
|
|
| >PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=2e-08 Score=92.87 Aligned_cols=82 Identities=29% Similarity=0.454 Sum_probs=67.0
Q ss_pred HHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcc
Q 016351 67 FNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKV 145 (391)
Q Consensus 67 ~~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~~ 145 (391)
.+.|.+.+...++.+|||||||+|.++..+++.+. +|+++|++ .+++.+++++.. . ++++++++|+.++.++ .+
T Consensus 18 ~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~~~-~v~~vEid~~~~~~l~~~~~~--~-~~v~ii~~D~~~~~~~-~~ 92 (258)
T PRK14896 18 VDRIVEYAEDTDGDPVLEIGPGKGALTDELAKRAK-KVYAIELDPRLAEFLRDDEIA--A-GNVEIIEGDALKVDLP-EF 92 (258)
T ss_pred HHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHhCC-EEEEEECCHHHHHHHHHHhcc--C-CCEEEEEeccccCCch-hc
Confidence 34455555556778999999999999999999865 89999999 999999987754 2 3599999999987764 58
Q ss_pred cEEEEccc
Q 016351 146 DVIISEWM 153 (391)
Q Consensus 146 D~Ivse~~ 153 (391)
|.|++++.
T Consensus 93 d~Vv~NlP 100 (258)
T PRK14896 93 NKVVSNLP 100 (258)
T ss_pred eEEEEcCC
Confidence 99999875
|
|
| >PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.7e-08 Score=98.00 Aligned_cols=97 Identities=22% Similarity=0.261 Sum_probs=79.6
Q ss_pred CCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC-CCcccEEEEccccc
Q 016351 79 GKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL-PEKVDVIISEWMGY 155 (391)
Q Consensus 79 ~~~VLDlGcGtG~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~-~~~~D~Ivse~~~~ 155 (391)
+.+|||++||+|.+++.+++. ++.+|+++|++ .+++.++++++.|++.+ ++++++|+..+.. .++||+|+.++.+
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~-~~v~~~Da~~~l~~~~~fD~V~lDP~G- 135 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLEN-EKVFNKDANALLHEERKFDVVDIDPFG- 135 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCc-eEEEhhhHHHHHhhcCCCCEEEECCCC-
Confidence 468999999999999998875 66689999999 89999999999999875 7899999877533 4679999998742
Q ss_pred cccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 156 FLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 156 ~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
....+++...+.++++|++..+
T Consensus 136 ------s~~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 136 ------SPAPFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred ------CcHHHHHHHHHHhcCCCEEEEE
Confidence 2234666655668999998877
|
|
| >PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase | Back alignment and domain information |
|---|
Probab=98.82 E-value=3.9e-08 Score=85.67 Aligned_cols=120 Identities=25% Similarity=0.314 Sum_probs=84.9
Q ss_pred HHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCC-Ce---------EEEEech-HHHHHHHHHHHHcCCCCcEEEE
Q 016351 64 DAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGA-RK---------VYAVEAT-KMSDHARTLVKANNLQDVVEVI 132 (391)
Q Consensus 64 ~~~~~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g~-~~---------V~avD~s-~~~~~a~~~~~~~~~~~~v~~i 132 (391)
+....++.......++..|||--||+|.+.+.++..+. .. ++|+|++ .++..|+++++..++.+.|.+.
T Consensus 14 ~~lA~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~ 93 (179)
T PF01170_consen 14 PTLAAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFI 93 (179)
T ss_dssp HHHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEE
T ss_pred HHHHHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEE
Confidence 45556666666666788999999999999988877632 13 7899999 9999999999999999899999
Q ss_pred EcccccCCC-CCcccEEEEccc-cccccC----cchHHHHHHHHhccccCCeEEEcc
Q 016351 133 EGSVEDIVL-PEKVDVIISEWM-GYFLLR----ESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 133 ~~d~~~~~~-~~~~D~Ivse~~-~~~~~~----e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
+.|+.++++ .+.+|+||+++. +.-+.. +.....+++.+.+.|++..+++..
T Consensus 94 ~~D~~~l~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~~ 150 (179)
T PF01170_consen 94 QWDARELPLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLTT 150 (179)
T ss_dssp E--GGGGGGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEEE
T ss_pred ecchhhcccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEEE
Confidence 999999984 489999999874 221221 123456678888999995555433
|
It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A. |
| >COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.82 E-value=2.7e-08 Score=93.28 Aligned_cols=118 Identities=19% Similarity=0.268 Sum_probs=94.5
Q ss_pred HHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEc-ccccCCCC
Q 016351 65 AYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEG-SVEDIVLP 142 (391)
Q Consensus 65 ~~~~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~-d~~~~~~~ 142 (391)
.+.+++.......+|..|||=-||||.+.+.+.-.|+ +|+|+|++ .|+.-|+.|.+..++.+ ..++.. |++.++++
T Consensus 184 ~lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~G~-~viG~Did~~mv~gak~Nl~~y~i~~-~~~~~~~Da~~lpl~ 261 (347)
T COG1041 184 RLARAMVNLARVKRGELVLDPFCGTGGILIEAGLMGA-RVIGSDIDERMVRGAKINLEYYGIED-YPVLKVLDATNLPLR 261 (347)
T ss_pred HHHHHHHHHhccccCCEeecCcCCccHHHHhhhhcCc-eEeecchHHHHHhhhhhhhhhhCcCc-eeEEEecccccCCCC
Confidence 4455565555667888999999999999999999999 79999999 99999999999998876 555555 99999988
Q ss_pred C-cccEEEEcccccccc----C---cchHHHHHHHHhccccCCeEEEcccc
Q 016351 143 E-KVDVIISEWMGYFLL----R---ESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 143 ~-~~D~Ivse~~~~~~~----~---e~~l~~~l~~~~~~L~~gG~ii~~~~ 185 (391)
+ .+|.|++|+. |.-. . +.....+++.+.+.|++||++++...
T Consensus 262 ~~~vdaIatDPP-YGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 262 DNSVDAIATDPP-YGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred CCccceEEecCC-CCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 5 4999999874 2211 1 23467788889999999998875544
|
|
| >PRK13256 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.82 E-value=2.8e-08 Score=89.07 Aligned_cols=118 Identities=11% Similarity=-0.023 Sum_probs=83.4
Q ss_pred HHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHH-------HHc----CCCCcEE
Q 016351 63 MDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLV-------KAN----NLQDVVE 130 (391)
Q Consensus 63 ~~~~~~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~-------~~~----~~~~~v~ 130 (391)
+..+.+.+.... ..++.+||+.|||.|.-+..+|+.|. +|+|+|+| ..++.+.+.. +.+ .-...|+
T Consensus 29 np~L~~~~~~l~-~~~~~rvLvPgCGkg~D~~~LA~~G~-~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~ 106 (226)
T PRK13256 29 NEFLVKHFSKLN-INDSSVCLIPMCGCSIDMLFFLSKGV-KVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIE 106 (226)
T ss_pred CHHHHHHHHhcC-CCCCCeEEEeCCCChHHHHHHHhCCC-cEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceE
Confidence 334444444332 23568999999999999999999999 69999999 6676664411 000 0013599
Q ss_pred EEEcccccCCCC----CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 131 VIEGSVEDIVLP----EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 131 ~i~~d~~~~~~~----~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
++++|+.++... ++||+|+-......+ ...+...+.+.+.++|+|||.++.-
T Consensus 107 ~~~gD~f~l~~~~~~~~~fD~VyDra~~~Al-pp~~R~~Y~~~l~~lL~pgg~llll 162 (226)
T PRK13256 107 IYVADIFNLPKIANNLPVFDIWYDRGAYIAL-PNDLRTNYAKMMLEVCSNNTQILLL 162 (226)
T ss_pred EEEccCcCCCccccccCCcCeeeeehhHhcC-CHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 999999998631 589998864433333 3456788899999999999987643
|
|
| >PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=98.81 E-value=9.5e-09 Score=92.16 Aligned_cols=115 Identities=20% Similarity=0.183 Sum_probs=81.3
Q ss_pred HHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHH-c------C----CCCcEEE
Q 016351 64 DAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKA-N------N----LQDVVEV 131 (391)
Q Consensus 64 ~~~~~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~-~------~----~~~~v~~ 131 (391)
..+.+.+.. +...++.+||+.|||.|.-...+|+.|. +|+|+|+| ..++.+.+.... . + -.++|++
T Consensus 24 p~L~~~~~~-l~~~~~~rvLvPgCG~g~D~~~La~~G~-~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~ 101 (218)
T PF05724_consen 24 PALVEYLDS-LALKPGGRVLVPGCGKGYDMLWLAEQGH-DVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITI 101 (218)
T ss_dssp HHHHHHHHH-HTTSTSEEEEETTTTTSCHHHHHHHTTE-EEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEE
T ss_pred HHHHHHHHh-cCCCCCCeEEEeCCCChHHHHHHHHCCC-eEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEE
Confidence 344444444 3345667999999999999999999998 79999999 667666332111 0 0 0235899
Q ss_pred EEcccccCCCC--CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEE
Q 016351 132 IEGSVEDIVLP--EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMY 181 (391)
Q Consensus 132 i~~d~~~~~~~--~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii 181 (391)
+++|+.++... ++||+|+-......+ ...+...+.+.+.++|+|||.++
T Consensus 102 ~~gDfF~l~~~~~g~fD~iyDr~~l~Al-pp~~R~~Ya~~l~~ll~p~g~~l 152 (218)
T PF05724_consen 102 YCGDFFELPPEDVGKFDLIYDRTFLCAL-PPEMRERYAQQLASLLKPGGRGL 152 (218)
T ss_dssp EES-TTTGGGSCHHSEEEEEECSSTTTS--GGGHHHHHHHHHHCEEEEEEEE
T ss_pred EEcccccCChhhcCCceEEEEecccccC-CHHHHHHHHHHHHHHhCCCCcEE
Confidence 99999998654 589999975443333 34567889999999999999954
|
Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B. |
| >PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.6e-08 Score=87.10 Aligned_cols=88 Identities=25% Similarity=0.288 Sum_probs=62.7
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccC--CCC-CcccEEEEcc
Q 016351 77 FQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDI--VLP-EKVDVIISEW 152 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~--~~~-~~~D~Ivse~ 152 (391)
.++.+|||||||.|.+...+.+....+.+|||++ +.+..+.+ +| +.++++|+.+- .++ ++||.||.
T Consensus 12 ~pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~----rG----v~Viq~Dld~gL~~f~d~sFD~VIl-- 81 (193)
T PF07021_consen 12 EPGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVA----RG----VSVIQGDLDEGLADFPDQSFDYVIL-- 81 (193)
T ss_pred CCCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHH----cC----CCEEECCHHHhHhhCCCCCccEEeh--
Confidence 4679999999999999988888644479999999 65544432 33 78999999873 244 89999995
Q ss_pred ccccccCcchHHHHHHHHhcccc
Q 016351 153 MGYFLLRESMFDSVICARDRWLK 175 (391)
Q Consensus 153 ~~~~~~~e~~l~~~l~~~~~~L~ 175 (391)
...+-.-..+..+++++.|.-+
T Consensus 82 -sqtLQ~~~~P~~vL~EmlRVgr 103 (193)
T PF07021_consen 82 -SQTLQAVRRPDEVLEEMLRVGR 103 (193)
T ss_pred -HhHHHhHhHHHHHHHHHHHhcC
Confidence 2333333346677777765533
|
Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells []. |
| >PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.78 E-value=2.7e-08 Score=92.68 Aligned_cols=81 Identities=25% Similarity=0.296 Sum_probs=65.1
Q ss_pred HHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCc-c
Q 016351 68 NSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEK-V 145 (391)
Q Consensus 68 ~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~-~ 145 (391)
+.+.+.+...++.+|||||||+|.++..+++.+. +|+|+|++ .|++.+++++.. ++++++++|+.+++++.- .
T Consensus 32 ~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~~-~v~avE~d~~~~~~~~~~~~~----~~v~~i~~D~~~~~~~~~~~ 106 (272)
T PRK00274 32 DKIVDAAGPQPGDNVLEIGPGLGALTEPLLERAA-KVTAVEIDRDLAPILAETFAE----DNLTIIEGDALKVDLSELQP 106 (272)
T ss_pred HHHHHhcCCCCcCeEEEeCCCccHHHHHHHHhCC-cEEEEECCHHHHHHHHHhhcc----CceEEEEChhhcCCHHHcCc
Confidence 3344444556778999999999999999999976 89999999 999999886642 359999999999876532 5
Q ss_pred cEEEEccc
Q 016351 146 DVIISEWM 153 (391)
Q Consensus 146 D~Ivse~~ 153 (391)
|.|++++.
T Consensus 107 ~~vv~NlP 114 (272)
T PRK00274 107 LKVVANLP 114 (272)
T ss_pred ceEEEeCC
Confidence 88998864
|
|
| >KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.78 E-value=2.1e-08 Score=91.79 Aligned_cols=107 Identities=19% Similarity=0.228 Sum_probs=83.6
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCC-----cEEEEEcccccC------CCCC-
Q 016351 77 FQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQD-----VVEVIEGSVEDI------VLPE- 143 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~-----~v~~i~~d~~~~------~~~~- 143 (391)
.++..+||+|||-|.-.+..-++|..+++++|+. ..++.|+++.+...-.. .+.|+.+|.... +.+.
T Consensus 116 ~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~dp 195 (389)
T KOG1975|consen 116 KRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKDP 195 (389)
T ss_pred ccccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCCC
Confidence 4567899999999998888889999999999999 77888877665422111 378999987553 2233
Q ss_pred cccEEEEc-cccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 144 KVDVIISE-WMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 144 ~~D~Ivse-~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
+||+|-|. .++|.+..+.....++..+.+.|+|||+||=.
T Consensus 196 ~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgT 236 (389)
T KOG1975|consen 196 RFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGT 236 (389)
T ss_pred CcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEe
Confidence 49999985 46777777777888999999999999999844
|
|
| >PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.6e-07 Score=81.81 Aligned_cols=98 Identities=30% Similarity=0.393 Sum_probs=80.5
Q ss_pred EEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEcccccccc
Q 016351 81 TVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMGYFLL 158 (391)
Q Consensus 81 ~VLDlGcGtG~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~~D~Ivse~~~~~~~ 158 (391)
+++|||+|.|.-++.+|-. ...+|+.+|.+ .-+...+..+...+++| ++++++++++.....+||+|++..+.
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~n-v~v~~~R~E~~~~~~~fd~v~aRAv~---- 125 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSN-VEVINGRAEEPEYRESFDVVTARAVA---- 125 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SS-EEEEES-HHHTTTTT-EEEEEEESSS----
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCC-EEEEEeeecccccCCCccEEEeehhc----
Confidence 7999999999988887766 34489999999 88999999999999986 99999999994445899999998764
Q ss_pred CcchHHHHHHHHhccccCCeEEEcccce
Q 016351 159 RESMFDSVICARDRWLKPTGVMYPSHAR 186 (391)
Q Consensus 159 ~e~~l~~~l~~~~~~L~~gG~ii~~~~~ 186 (391)
.+..++.-+.++|++||.++...+.
T Consensus 126 ---~l~~l~~~~~~~l~~~G~~l~~KG~ 150 (184)
T PF02527_consen 126 ---PLDKLLELARPLLKPGGRLLAYKGP 150 (184)
T ss_dssp ---SHHHHHHHHGGGEEEEEEEEEEESS
T ss_pred ---CHHHHHHHHHHhcCCCCEEEEEcCC
Confidence 3567888889999999999866554
|
Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A. |
| >TIGR00478 tly hemolysin TlyA family protein | Back alignment and domain information |
|---|
Probab=98.74 E-value=3.7e-08 Score=88.68 Aligned_cols=48 Identities=27% Similarity=0.405 Sum_probs=39.1
Q ss_pred HHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHH
Q 016351 68 NSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDH 115 (391)
Q Consensus 68 ~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~ 115 (391)
.++.......++++|||+|||||.++..+++.|+++|+|+|.+ .|+..
T Consensus 65 ~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~ 113 (228)
T TIGR00478 65 EALEEFNIDVKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAE 113 (228)
T ss_pred HHHHhcCCCCCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHH
Confidence 3444433345788999999999999999999999899999999 67654
|
Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479). |
| >TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase | Back alignment and domain information |
|---|
Probab=98.73 E-value=9.7e-08 Score=92.18 Aligned_cols=94 Identities=21% Similarity=0.196 Sum_probs=71.8
Q ss_pred CEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC-----------C-----
Q 016351 80 KTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL-----------P----- 142 (391)
Q Consensus 80 ~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~-----------~----- 142 (391)
.+|||++||+|.+++.+++.. ++|+|||++ ++++.|+++++.|++.+ ++++.+|+.++.. .
T Consensus 199 ~~vlDl~~G~G~~sl~la~~~-~~v~~vE~~~~av~~a~~n~~~~~~~~-v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 276 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQNF-RRVLATEIAKPSVNAAQYNIAANNIDN-VQIIRMSAEEFTQAMNGVREFRRLKGIDLK 276 (353)
T ss_pred CcEEEEeccccHHHHHHHHhC-CEEEEEECCHHHHHHHHHHHHHcCCCc-EEEEEcCHHHHHHHHhhccccccccccccc
Confidence 469999999999999888774 589999999 99999999999999975 9999999877421 0
Q ss_pred -CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 143 -EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 143 -~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
.++|+|+.|+.-.. ..+.+++.+.+ |+++++.+
T Consensus 277 ~~~~d~v~lDPPR~G-----~~~~~l~~l~~---~~~ivYvs 310 (353)
T TIGR02143 277 SYNCSTIFVDPPRAG-----LDPDTCKLVQA---YERILYIS 310 (353)
T ss_pred cCCCCEEEECCCCCC-----CcHHHHHHHHc---CCcEEEEE
Confidence 13799999886322 23345555433 66666544
|
This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA. |
| >PRK11727 23S rRNA mA1618 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.72 E-value=7.9e-08 Score=90.76 Aligned_cols=76 Identities=16% Similarity=0.209 Sum_probs=58.9
Q ss_pred CCCEEEEECCcccHHHHHHHH-cCCCeEEEEech-HHHHHHHHHHHHc-CCCCcEEEEE-cccccCC-----CCCcccEE
Q 016351 78 QGKTVLDVGTGSGILAIWSAQ-AGARKVYAVEAT-KMSDHARTLVKAN-NLQDVVEVIE-GSVEDIV-----LPEKVDVI 148 (391)
Q Consensus 78 ~~~~VLDlGcGtG~l~~~~a~-~g~~~V~avD~s-~~~~~a~~~~~~~-~~~~~v~~i~-~d~~~~~-----~~~~~D~I 148 (391)
++.+|||||||+|.+..+++. ....+++|+|++ .+++.|+++++.| ++.++|+++. .+..++. ..++||+|
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDli 193 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDAT 193 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEE
Confidence 457899999999876655554 333489999999 8999999999999 8998899875 3333321 13689999
Q ss_pred EEccc
Q 016351 149 ISEWM 153 (391)
Q Consensus 149 vse~~ 153 (391)
+|++.
T Consensus 194 vcNPP 198 (321)
T PRK11727 194 LCNPP 198 (321)
T ss_pred EeCCC
Confidence 99985
|
|
| >PLN02823 spermine synthase | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.3e-07 Score=90.17 Aligned_cols=106 Identities=23% Similarity=0.237 Sum_probs=79.6
Q ss_pred CCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcC--C-CCcEEEEEcccccCC--CCCcccEEEE
Q 016351 78 QGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANN--L-QDVVEVIEGSVEDIV--LPEKVDVIIS 150 (391)
Q Consensus 78 ~~~~VLDlGcGtG~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~--~-~~~v~~i~~d~~~~~--~~~~~D~Ivs 150 (391)
..++||.||+|.|.++..+++. +..+|++||++ .+++.|++.+..++ + ..+++++.+|.+..- ..++||+|++
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi~ 182 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVIIG 182 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEEe
Confidence 4578999999999999988886 56789999999 89999999876432 2 357999999998852 2378999999
Q ss_pred cccccc---ccCcchHHHHHH-HHhccccCCeEEEcc
Q 016351 151 EWMGYF---LLRESMFDSVIC-ARDRWLKPTGVMYPS 183 (391)
Q Consensus 151 e~~~~~---~~~e~~l~~~l~-~~~~~L~~gG~ii~~ 183 (391)
+..... ....-.-..+++ .+.+.|+|||+++..
T Consensus 183 D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q 219 (336)
T PLN02823 183 DLADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQ 219 (336)
T ss_pred cCCCccccCcchhhccHHHHHHHHHHhcCCCcEEEEe
Confidence 854321 011111235666 788999999998764
|
|
| >PRK05031 tRNA (uracil-5-)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.5e-07 Score=91.13 Aligned_cols=110 Identities=17% Similarity=0.188 Sum_probs=77.4
Q ss_pred HHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC-
Q 016351 63 MDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV- 140 (391)
Q Consensus 63 ~~~~~~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~- 140 (391)
.+.+.+.+...+.. .+.+|||++||+|.+++.+++. +++|+|||.+ .+++.|+++++.|++. +++++.+|+.++.
T Consensus 192 ~e~l~~~v~~~~~~-~~~~vLDl~~G~G~~sl~la~~-~~~v~~vE~~~~ai~~a~~N~~~~~~~-~v~~~~~d~~~~l~ 268 (362)
T PRK05031 192 NEKMLEWALDATKG-SKGDLLELYCGNGNFTLALARN-FRRVLATEISKPSVAAAQYNIAANGID-NVQIIRMSAEEFTQ 268 (362)
T ss_pred HHHHHHHHHHHhhc-CCCeEEEEeccccHHHHHHHhh-CCEEEEEECCHHHHHHHHHHHHHhCCC-cEEEEECCHHHHHH
Confidence 34444444443322 2357999999999999988876 4589999999 9999999999999986 4999999987741
Q ss_pred -C---------------CCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 141 -L---------------PEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 141 -~---------------~~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
+ ..+||+|+.|+.- .. ..+.++..+.+ ++++++.+
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~D~v~lDPPR-~G----~~~~~l~~l~~---~~~ivyvS 319 (362)
T PRK05031 269 AMNGVREFNRLKGIDLKSYNFSTIFVDPPR-AG----LDDETLKLVQA---YERILYIS 319 (362)
T ss_pred HHhhcccccccccccccCCCCCEEEECCCC-CC----CcHHHHHHHHc---cCCEEEEE
Confidence 1 1258999999863 22 22344554433 56655543
|
|
| >COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.5e-07 Score=87.33 Aligned_cols=111 Identities=22% Similarity=0.209 Sum_probs=87.8
Q ss_pred CEEEEECCcccHHHHHHHHcC-CCeEEEEech-HHHHHHHHHHHHcC--C-CCcEEEEEcccccCC--CCCcccEEEEcc
Q 016351 80 KTVLDVGTGSGILAIWSAQAG-ARKVYAVEAT-KMSDHARTLVKANN--L-QDVVEVIEGSVEDIV--LPEKVDVIISEW 152 (391)
Q Consensus 80 ~~VLDlGcGtG~l~~~~a~~g-~~~V~avD~s-~~~~~a~~~~~~~~--~-~~~v~~i~~d~~~~~--~~~~~D~Ivse~ 152 (391)
++||-||.|.|..+..+++.. ..+++.||++ .+++.+++.+.... . ..+++++.+|..++- .+++||+|+++.
T Consensus 78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~D~ 157 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIVDS 157 (282)
T ss_pred CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEEEcC
Confidence 799999999999999999985 5689999999 89999999876543 2 368999999988863 336899999977
Q ss_pred ccccccCcch-HHHHHHHHhccccCCeEEEcccceeEEe
Q 016351 153 MGYFLLRESM-FDSVICARDRWLKPTGVMYPSHARMWVA 190 (391)
Q Consensus 153 ~~~~~~~e~~-l~~~l~~~~~~L~~gG~ii~~~~~~~~~ 190 (391)
.......+.. -..+++.+++.|+++|+++......+..
T Consensus 158 tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~~~~~~~ 196 (282)
T COG0421 158 TDPVGPAEALFTEEFYEGCRRALKEDGIFVAQAGSPFLQ 196 (282)
T ss_pred CCCCCcccccCCHHHHHHHHHhcCCCcEEEEecCCcccc
Confidence 5553222221 2578899999999999999876665554
|
|
| >PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.9e-07 Score=85.42 Aligned_cols=106 Identities=25% Similarity=0.240 Sum_probs=79.1
Q ss_pred HHhcCCCCCCCEEEEECCcccHHHHHHHHc-CCCeEEEEechHHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEE
Q 016351 70 IFQNKHHFQGKTVLDVGTGSGILAIWSAQA-GARKVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVI 148 (391)
Q Consensus 70 i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~-g~~~V~avD~s~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~~D~I 148 (391)
+.......+.++|||||+|+|.++..++++ ..-+++..|.-.+++.+++ .++|+++.+|+. -++|. +|++
T Consensus 92 ~~~~~d~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v~~~~~~-------~~rv~~~~gd~f-~~~P~-~D~~ 162 (241)
T PF00891_consen 92 LLEAFDFSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDLPEVIEQAKE-------ADRVEFVPGDFF-DPLPV-ADVY 162 (241)
T ss_dssp HHHHSTTTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE-HHHHCCHHH-------TTTEEEEES-TT-TCCSS-ESEE
T ss_pred hhccccccCccEEEeccCcchHHHHHHHHHCCCCcceeeccHhhhhcccc-------ccccccccccHH-hhhcc-ccce
Confidence 344444445579999999999999998887 3348999999877777776 567999999998 46667 9999
Q ss_pred EEccccccccCcchHHHHHHHHhccccCC--eEEEcccc
Q 016351 149 ISEWMGYFLLRESMFDSVICARDRWLKPT--GVMYPSHA 185 (391)
Q Consensus 149 vse~~~~~~~~e~~l~~~l~~~~~~L~~g--G~ii~~~~ 185 (391)
+...+.+.+..+ ....+|+++++.|+|| |++++...
T Consensus 163 ~l~~vLh~~~d~-~~~~iL~~~~~al~pg~~g~llI~e~ 200 (241)
T PF00891_consen 163 LLRHVLHDWSDE-DCVKILRNAAAALKPGKDGRLLIIEM 200 (241)
T ss_dssp EEESSGGGS-HH-HHHHHHHHHHHHSEECTTEEEEEEEE
T ss_pred eeehhhhhcchH-HHHHHHHHHHHHhCCCCCCeEEEEee
Confidence 976555555544 4667899999999998 99886543
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A .... |
| >PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.4e-07 Score=83.22 Aligned_cols=103 Identities=21% Similarity=0.312 Sum_probs=75.4
Q ss_pred CEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccC----CCCCcccEEEEccc
Q 016351 80 KTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDI----VLPEKVDVIISEWM 153 (391)
Q Consensus 80 ~~VLDlGcGtG~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~----~~~~~~D~Ivse~~ 153 (391)
..+||||||.|.+.+.+|+. .-..++|||+. ..+..|.+++...+++| +.++++|+..+ ..++++|-|.....
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~N-v~~~~~da~~~l~~~~~~~~v~~i~i~FP 97 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKN-VRFLRGDARELLRRLFPPGSVDRIYINFP 97 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSS-EEEEES-CTTHHHHHSTTTSEEEEEEES-
T ss_pred CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccc-eEEEEccHHHHHhhcccCCchheEEEeCC
Confidence 48999999999999888876 44589999999 88899988898889977 99999998873 23478998886433
Q ss_pred cccccCcc-----hHHHHHHHHhccccCCeEEEcc
Q 016351 154 GYFLLRES-----MFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 154 ~~~~~~e~-----~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
+...-... .-+.++..+.+.|+|||.+.+.
T Consensus 98 DPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~ 132 (195)
T PF02390_consen 98 DPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFA 132 (195)
T ss_dssp ----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEE
T ss_pred CCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEE
Confidence 33221111 2367889999999999988643
|
1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B .... |
| >KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.69 E-value=4.1e-08 Score=79.68 Aligned_cols=82 Identities=17% Similarity=0.275 Sum_probs=71.2
Q ss_pred HHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-Cccc
Q 016351 69 SIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVD 146 (391)
Q Consensus 69 ~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~-~~~D 146 (391)
.|.......++++++|||||+|.|+..++-.++..|.|+|+. ..++.+.+++....++ ++++++|+.++.+. +.||
T Consensus 39 ~Ih~TygdiEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEvq--idlLqcdildle~~~g~fD 116 (185)
T KOG3420|consen 39 TIHNTYGDIEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEVQ--IDLLQCDILDLELKGGIFD 116 (185)
T ss_pred HHHhhhccccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhhh--hheeeeeccchhccCCeEe
Confidence 344555567899999999999999988887788899999999 8999999999988876 79999999998766 8899
Q ss_pred EEEEcc
Q 016351 147 VIISEW 152 (391)
Q Consensus 147 ~Ivse~ 152 (391)
..+.++
T Consensus 117 taviNp 122 (185)
T KOG3420|consen 117 TAVINP 122 (185)
T ss_pred eEEecC
Confidence 999875
|
|
| >COG2521 Predicted archaeal methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.7e-08 Score=88.42 Aligned_cols=120 Identities=24% Similarity=0.253 Sum_probs=90.2
Q ss_pred HHHHHHHHHhc--CCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCC-CcEEEEEccccc
Q 016351 63 MDAYFNSIFQN--KHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQ-DVVEVIEGSVED 138 (391)
Q Consensus 63 ~~~~~~~i~~~--~~~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~-~~v~~i~~d~~~ 138 (391)
.+-|..++.+. ....++.+|||...|-|..++.+++.||.+|+.+|.+ ..++.|.-|=-..++. ..|+++.+|+.+
T Consensus 117 tdP~~Dt~~Kv~~V~~~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e 196 (287)
T COG2521 117 TDPLEDTLAKVELVKVKRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYE 196 (287)
T ss_pred cCcHHHHHhhhheeccccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHH
Confidence 34445544432 2234689999999999999999999999999999999 7877765322111221 248999999988
Q ss_pred C--CCC-CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEc
Q 016351 139 I--VLP-EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 139 ~--~~~-~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~ 182 (391)
+ .++ ++||+||.++.-..+..+-.-..+.+++.|+|+|||.++-
T Consensus 197 ~V~~~~D~sfDaIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFH 243 (287)
T COG2521 197 VVKDFDDESFDAIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFH 243 (287)
T ss_pred HHhcCCccccceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEE
Confidence 6 344 7899999998766666665567889999999999999883
|
|
| >PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like | Back alignment and domain information |
|---|
Probab=98.69 E-value=3.8e-08 Score=86.46 Aligned_cols=105 Identities=23% Similarity=0.214 Sum_probs=75.5
Q ss_pred CCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-CcccEEEEcccccc
Q 016351 79 GKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIISEWMGYF 156 (391)
Q Consensus 79 ~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~-~~~D~Ivse~~~~~ 156 (391)
..++||.|||.|..+..+.-.-+.+|..||.. ..++.|++..... .....++.+..+.++.++ .+||+|++.|+..+
T Consensus 56 ~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~-~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lgh 134 (218)
T PF05891_consen 56 FNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKD-NPRVGEFYCVGLQDFTPEEGKYDLIWIQWCLGH 134 (218)
T ss_dssp -SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCG-GCCEEEEEES-GGG----TT-EEEEEEES-GGG
T ss_pred cceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhccc-CCCcceEEecCHhhccCCCCcEeEEEehHhhcc
Confidence 47899999999999986655457799999999 8999998765541 234478899999998765 79999999987666
Q ss_pred ccCcchHHHHHHHHhccccCCeEEEcccc
Q 016351 157 LLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 157 ~~~e~~l~~~l~~~~~~L~~gG~ii~~~~ 185 (391)
|..+ ++-.+|..++..|+|+|+|++-..
T Consensus 135 LTD~-dlv~fL~RCk~~L~~~G~IvvKEN 162 (218)
T PF05891_consen 135 LTDE-DLVAFLKRCKQALKPNGVIVVKEN 162 (218)
T ss_dssp S-HH-HHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCHH-HHHHHHHHHHHhCcCCcEEEEEec
Confidence 6554 678899999999999998885433
|
; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B. |
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=2.6e-07 Score=75.46 Aligned_cols=76 Identities=18% Similarity=0.243 Sum_probs=60.4
Q ss_pred HHHHHHhcCCCCCCCEEEEECCcccH-HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-
Q 016351 66 YFNSIFQNKHHFQGKTVLDVGTGSGI-LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP- 142 (391)
Q Consensus 66 ~~~~i~~~~~~~~~~~VLDlGcGtG~-l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~- 142 (391)
+.+.|.+.+...++.+|||||||+|. ++..+++.|. .|+|+|++ ..++.|+++ + ++++.+|+.+..+.
T Consensus 4 i~~~l~~~~~~~~~~kileIG~GfG~~vA~~L~~~G~-~ViaIDi~~~aV~~a~~~----~----~~~v~dDlf~p~~~~ 74 (134)
T PRK04148 4 IAEFIAENYEKGKNKKIVELGIGFYFKVAKKLKESGF-DVIVIDINEKAVEKAKKL----G----LNAFVDDLFNPNLEI 74 (134)
T ss_pred HHHHHHHhcccccCCEEEEEEecCCHHHHHHHHHCCC-EEEEEECCHHHHHHHHHh----C----CeEEECcCCCCCHHH
Confidence 34456665555567899999999996 8999999888 79999999 766666543 2 78999999887655
Q ss_pred -CcccEEEE
Q 016351 143 -EKVDVIIS 150 (391)
Q Consensus 143 -~~~D~Ivs 150 (391)
+.+|+|.+
T Consensus 75 y~~a~liys 83 (134)
T PRK04148 75 YKNAKLIYS 83 (134)
T ss_pred HhcCCEEEE
Confidence 88999998
|
|
| >COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.7e-07 Score=92.11 Aligned_cols=118 Identities=24% Similarity=0.278 Sum_probs=90.8
Q ss_pred hHhHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEccccc
Q 016351 60 RVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVED 138 (391)
Q Consensus 60 ~~r~~~~~~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~ 138 (391)
...++.+.+.....+...++.+|||+-||.|.+++.+|+... +|+|+|++ ++++.|+++++.|++.| ++|+.++.++
T Consensus 275 ~~~~ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~~~-~V~gvEi~~~aV~~A~~NA~~n~i~N-~~f~~~~ae~ 352 (432)
T COG2265 275 PAVAEKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKRVK-KVHGVEISPEAVEAAQENAAANGIDN-VEFIAGDAEE 352 (432)
T ss_pred HHHHHHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhcccCC-EEEEEecCHHHHHHHHHHHHHcCCCc-EEEEeCCHHH
Confidence 344555555555566556778999999999999999997654 89999999 99999999999999998 9999999998
Q ss_pred CCCC----CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcccc
Q 016351 139 IVLP----EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 139 ~~~~----~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~~ 185 (391)
+... ..+|+|+.|+.-..+. +.+++.+.+ ++|..+++.+..
T Consensus 353 ~~~~~~~~~~~d~VvvDPPR~G~~-----~~~lk~l~~-~~p~~IvYVSCN 397 (432)
T COG2265 353 FTPAWWEGYKPDVVVVDPPRAGAD-----REVLKQLAK-LKPKRIVYVSCN 397 (432)
T ss_pred HhhhccccCCCCEEEECCCCCCCC-----HHHHHHHHh-cCCCcEEEEeCC
Confidence 7533 4789999988655432 345555544 577776665533
|
|
| >COG2520 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.5e-07 Score=88.88 Aligned_cols=99 Identities=25% Similarity=0.295 Sum_probs=84.3
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-CcccEEEEcccc
Q 016351 77 FQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIISEWMG 154 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~-~~~D~Ivse~~~ 154 (391)
.+|.+|||+-||-|.+++.+|+.|..+|+|+|+| ..+..++++++.|++.++|+.+++|.+++... +.+|-|+...+
T Consensus 187 ~~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIim~~p- 265 (341)
T COG2520 187 KEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADRIIMGLP- 265 (341)
T ss_pred cCCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCCEEEeCCC-
Confidence 4589999999999999999999998779999999 89999999999999999999999999998766 88999996433
Q ss_pred ccccCcchHHHHHHHHhccccCCeEEEc
Q 016351 155 YFLLRESMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 155 ~~~~~e~~l~~~l~~~~~~L~~gG~ii~ 182 (391)
.. -..++..+.+.++++|++..
T Consensus 266 --~~----a~~fl~~A~~~~k~~g~iHy 287 (341)
T COG2520 266 --KS----AHEFLPLALELLKDGGIIHY 287 (341)
T ss_pred --Cc----chhhHHHHHHHhhcCcEEEE
Confidence 22 23456666778888998763
|
|
| >KOG2361 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.65 E-value=6.2e-08 Score=85.53 Aligned_cols=106 Identities=22% Similarity=0.226 Sum_probs=77.9
Q ss_pred EEEEECCcccHHHHHHHHcCCC---eEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC-----CCCcccEEEEc
Q 016351 81 TVLDVGTGSGILAIWSAQAGAR---KVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV-----LPEKVDVIISE 151 (391)
Q Consensus 81 ~VLDlGcGtG~l~~~~a~~g~~---~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~-----~~~~~D~Ivse 151 (391)
+||+||||.|.....+.+.... +|+++|.| .+++..+++...+. +++.-...|+..-. .++.+|+|++.
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e--~~~~afv~Dlt~~~~~~~~~~~svD~it~I 151 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDE--SRVEAFVWDLTSPSLKEPPEEGSVDIITLI 151 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccch--hhhcccceeccchhccCCCCcCccceEEEE
Confidence 7999999999988888876332 79999999 88888887776654 33554445554422 12789999985
Q ss_pred cccccccCcchHHHHHHHHhccccCCeEEEcccceeEE
Q 016351 152 WMGYFLLRESMFDSVICARDRWLKPTGVMYPSHARMWV 189 (391)
Q Consensus 152 ~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~~~~~~ 189 (391)
.+...+..+. ....++.+.++|||||.+++..+..+-
T Consensus 152 FvLSAi~pek-~~~a~~nl~~llKPGG~llfrDYg~~D 188 (264)
T KOG2361|consen 152 FVLSAIHPEK-MQSVIKNLRTLLKPGGSLLFRDYGRYD 188 (264)
T ss_pred EEEeccChHH-HHHHHHHHHHHhCCCcEEEEeecccch
Confidence 5444455543 567799999999999999988776554
|
|
| >KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.7e-07 Score=84.06 Aligned_cols=86 Identities=27% Similarity=0.371 Sum_probs=74.5
Q ss_pred HHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCC
Q 016351 65 AYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPE 143 (391)
Q Consensus 65 ~~~~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~ 143 (391)
...+.|.......+...||++|.|||.++..+.++|+ +|+|+|++ .|+....++++-...+++.+++++|+...++|
T Consensus 45 ~v~~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~~k-kVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~P- 122 (315)
T KOG0820|consen 45 LVIDQIVEKADLKPTDVVLEVGPGTGNLTVKLLEAGK-KVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDLP- 122 (315)
T ss_pred HHHHHHHhccCCCCCCEEEEeCCCCCHHHHHHHHhcC-eEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCCc-
Confidence 3445566666677889999999999999999999987 79999999 99999999988777778999999999988765
Q ss_pred cccEEEEcc
Q 016351 144 KVDVIISEW 152 (391)
Q Consensus 144 ~~D~Ivse~ 152 (391)
.||.+|++.
T Consensus 123 ~fd~cVsNl 131 (315)
T KOG0820|consen 123 RFDGCVSNL 131 (315)
T ss_pred ccceeeccC
Confidence 799999975
|
|
| >KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.63 E-value=4.8e-07 Score=76.50 Aligned_cols=102 Identities=20% Similarity=0.341 Sum_probs=78.8
Q ss_pred CCCEEEEECCcccHHHHHHHHc--CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEcccc
Q 016351 78 QGKTVLDVGTGSGILAIWSAQA--GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMG 154 (391)
Q Consensus 78 ~~~~VLDlGcGtG~l~~~~a~~--g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~~D~Ivse~~~ 154 (391)
..+.+||||||+|..+-++++. +.....++|+| .+++..++.++.|+.. +++++.|+..--.++++|+++-++.
T Consensus 43 ~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~--~~~V~tdl~~~l~~~~VDvLvfNPP- 119 (209)
T KOG3191|consen 43 NPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVH--IDVVRTDLLSGLRNESVDVLVFNPP- 119 (209)
T ss_pred CceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCc--cceeehhHHhhhccCCccEEEECCC-
Confidence 3678999999999999888886 34578899999 8888889999988875 8899999877544589999998662
Q ss_pred cccc-----------------Cc--chHHHHHHHHhccccCCeEEEc
Q 016351 155 YFLL-----------------RE--SMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 155 ~~~~-----------------~e--~~l~~~l~~~~~~L~~gG~ii~ 182 (391)
|... .. ...+.++..+..+|.|.|.++.
T Consensus 120 YVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Yl 166 (209)
T KOG3191|consen 120 YVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYL 166 (209)
T ss_pred cCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEe
Confidence 2211 11 1256778888889999998763
|
|
| >COG3897 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.5e-07 Score=80.56 Aligned_cols=104 Identities=26% Similarity=0.369 Sum_probs=77.7
Q ss_pred HHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCccc
Q 016351 68 NSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVD 146 (391)
Q Consensus 68 ~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~~D 146 (391)
+.|..+.....+++|||+|+|+|+.++.++++|++.|++.|+. -..+.++-|++.|+.. |.+...|... .+..+|
T Consensus 69 R~i~~~PetVrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv~--i~~~~~d~~g--~~~~~D 144 (218)
T COG3897 69 RYIDDHPETVRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGVS--ILFTHADLIG--SPPAFD 144 (218)
T ss_pred HHHhcCccccccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhccce--eEEeeccccC--CCccee
Confidence 3455555667789999999999999999999999999999999 6777888899999976 8999888776 357899
Q ss_pred EEEEccccccccCcchHHHHHHHHhccccCCeE
Q 016351 147 VIISEWMGYFLLRESMFDSVICARDRWLKPTGV 179 (391)
Q Consensus 147 ~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ 179 (391)
+|+..- .......-..++. +.+.|+..|.
T Consensus 145 l~LagD---lfy~~~~a~~l~~-~~~~l~~~g~ 173 (218)
T COG3897 145 LLLAGD---LFYNHTEADRLIP-WKDRLAEAGA 173 (218)
T ss_pred EEEeec---eecCchHHHHHHH-HHHHHHhCCC
Confidence 999622 2222223344555 4444555543
|
|
| >TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase | Back alignment and domain information |
|---|
Probab=98.60 E-value=2.8e-07 Score=89.10 Aligned_cols=97 Identities=22% Similarity=0.269 Sum_probs=81.2
Q ss_pred CCEEEEECCcccHHHHHHHHc--CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC--CCcccEEEEccc
Q 016351 79 GKTVLDVGTGSGILAIWSAQA--GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL--PEKVDVIISEWM 153 (391)
Q Consensus 79 ~~~VLDlGcGtG~l~~~~a~~--g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~--~~~~D~Ivse~~ 153 (391)
+.+|||+.||+|..++.+++. |+++|+++|++ ..++.++++++.|++.+ ++++++|+..+.. .++||+|..++.
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~-~~v~~~Da~~~l~~~~~~fDvIdlDPf 123 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVEN-IEVPNEDAANVLRYRNRKFHVIDIDPF 123 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEchhHHHHHHHhCCCCCEEEeCCC
Confidence 358999999999999999987 77899999999 89999999999998864 8999999987632 267999998874
Q ss_pred cccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 154 GYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 154 ~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
+ ....+++.+.+.++++|++...
T Consensus 124 G-------s~~~fld~al~~~~~~glL~vT 146 (374)
T TIGR00308 124 G-------TPAPFVDSAIQASAERGLLLVT 146 (374)
T ss_pred C-------CcHHHHHHHHHhcccCCEEEEE
Confidence 2 1235777888889999988765
|
This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes. |
| >TIGR00755 ksgA dimethyladenosine transferase | Back alignment and domain information |
|---|
Probab=98.59 E-value=2.5e-07 Score=85.31 Aligned_cols=81 Identities=27% Similarity=0.436 Sum_probs=64.3
Q ss_pred HHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCccc
Q 016351 68 NSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVD 146 (391)
Q Consensus 68 ~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~~D 146 (391)
+.+.+.+...++.+|||||||+|.++..+++.+. +|+++|++ .+++.++++... ..+++++++|+.+++++ .+|
T Consensus 19 ~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~~-~v~~iE~d~~~~~~l~~~~~~---~~~v~v~~~D~~~~~~~-~~d 93 (253)
T TIGR00755 19 QKIVEAANVLEGDVVLEIGPGLGALTEPLLKRAK-KVTAIEIDPRLAEILRKLLSL---YERLEVIEGDALKVDLP-DFP 93 (253)
T ss_pred HHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhCC-cEEEEECCHHHHHHHHHHhCc---CCcEEEEECchhcCChh-HcC
Confidence 3444445556778999999999999999999876 69999999 899998877643 24599999999987764 566
Q ss_pred ---EEEEccc
Q 016351 147 ---VIISEWM 153 (391)
Q Consensus 147 ---~Ivse~~ 153 (391)
+|++++.
T Consensus 94 ~~~~vvsNlP 103 (253)
T TIGR00755 94 KQLKVVSNLP 103 (253)
T ss_pred CcceEEEcCC
Confidence 8888753
|
Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase |
| >COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=98.57 E-value=4.1e-07 Score=80.62 Aligned_cols=134 Identities=23% Similarity=0.246 Sum_probs=95.9
Q ss_pred hhhhhhhhhhhhhHhhcCChHhHHHHHHHHHhcCC---CCC--CCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHH
Q 016351 41 ANYFCTYAFLYHQKEMLSDRVRMDAYFNSIFQNKH---HFQ--GKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMS 113 (391)
Q Consensus 41 ~~~~~~~~~~~~~~~ml~d~~r~~~~~~~i~~~~~---~~~--~~~VLDlGcGtG~l~~~~a~~-g~~~V~avD~s-~~~ 113 (391)
..|++..................+.|.+.+...+. ..+ +++++|||+|.|.-++.+|-. ...+|+-+|.. .-+
T Consensus 25 ~~Y~~lL~~wN~~~NLt~~~~~~e~~~rHilDSl~~~~~~~~~~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~ 104 (215)
T COG0357 25 EAYVELLLKWNKAYNLTAIRDPEELWQRHILDSLVLLPYLDGKAKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKI 104 (215)
T ss_pred HHHHHHHHHhhHhcCCCCCCCHHHHHHHHHHHHhhhhhcccccCCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHH
Confidence 44554444333333333333334556665544332 222 589999999999988887733 33469999999 889
Q ss_pred HHHHHHHHHcCCCCcEEEEEcccccCCCCCc-ccEEEEccccccccCcchHHHHHHHHhccccCCeEEEc
Q 016351 114 DHARTLVKANNLQDVVEVIEGSVEDIVLPEK-VDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 114 ~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~-~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~ 182 (391)
...+...+..+++| ++++++.++++....+ ||+|+|..+. .+..+..-+..++++||.++.
T Consensus 105 ~FL~~~~~eL~L~n-v~i~~~RaE~~~~~~~~~D~vtsRAva-------~L~~l~e~~~pllk~~g~~~~ 166 (215)
T COG0357 105 AFLREVKKELGLEN-VEIVHGRAEEFGQEKKQYDVVTSRAVA-------SLNVLLELCLPLLKVGGGFLA 166 (215)
T ss_pred HHHHHHHHHhCCCC-eEEehhhHhhcccccccCcEEEeehcc-------chHHHHHHHHHhcccCCcchh
Confidence 99999999999987 9999999999865434 9999998764 356677888899999998763
|
|
| >PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ] | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.5e-07 Score=79.81 Aligned_cols=72 Identities=22% Similarity=0.226 Sum_probs=56.3
Q ss_pred CEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC---C-cccEEEEcc
Q 016351 80 KTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP---E-KVDVIISEW 152 (391)
Q Consensus 80 ~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~---~-~~D~Ivse~ 152 (391)
.+|+|+.||.|..++.+|+.+. +|+|||++ ..++.|+.+++-.|..++|+++++|+.++... . .+|+|+.++
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~~-~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlSP 77 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTFD-RVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLSP 77 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT--EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE--
T ss_pred CEEEEeccCcCHHHHHHHHhCC-eEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEECC
Confidence 3699999999999999999965 89999999 89999999999999999999999999886322 1 289999865
|
Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A. |
| >COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.55 E-value=9.6e-07 Score=84.11 Aligned_cols=123 Identities=20% Similarity=0.204 Sum_probs=94.5
Q ss_pred HHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCC----------------------------------------
Q 016351 63 MDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGAR---------------------------------------- 102 (391)
Q Consensus 63 ~~~~~~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g~~---------------------------------------- 102 (391)
.+.+..+|.......++..++|--||+|.+.+.+|..+..
T Consensus 176 ketLAaAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~ 255 (381)
T COG0116 176 KETLAAAILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELP 255 (381)
T ss_pred hHHHHHHHHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccc
Confidence 4666778887777777788999999999999988876531
Q ss_pred eEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-CcccEEEEccc-cccccCcchHH----HHHHHHhcccc
Q 016351 103 KVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIISEWM-GYFLLRESMFD----SVICARDRWLK 175 (391)
Q Consensus 103 ~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~-~~~D~Ivse~~-~~~~~~e~~l~----~~l~~~~~~L~ 175 (391)
.++|+|++ .+++.|+.|++..|+.+.|+|.++|+..+..+ +.+|+|||++. +--+..+..+. .+...+++.++
T Consensus 256 ~~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~ 335 (381)
T COG0116 256 IIYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLA 335 (381)
T ss_pred eEEEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhc
Confidence 37799999 99999999999999999999999999999877 89999999874 22233333333 33344456666
Q ss_pred CCeEEEcccc
Q 016351 176 PTGVMYPSHA 185 (391)
Q Consensus 176 ~gG~ii~~~~ 185 (391)
.-+..|+...
T Consensus 336 ~ws~~v~tt~ 345 (381)
T COG0116 336 GWSRYVFTTS 345 (381)
T ss_pred CCceEEEEcc
Confidence 6666665543
|
|
| >COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.55 E-value=5.3e-07 Score=82.03 Aligned_cols=83 Identities=20% Similarity=0.323 Sum_probs=69.8
Q ss_pred HHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCC--
Q 016351 67 FNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPE-- 143 (391)
Q Consensus 67 ~~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~-- 143 (391)
.+.|.......++..|||||+|.|.++..+++.+. +|+|||++ .++...++... ..++++++++|+...+++.
T Consensus 19 ~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~~-~v~aiEiD~~l~~~L~~~~~---~~~n~~vi~~DaLk~d~~~l~ 94 (259)
T COG0030 19 IDKIVEAANISPGDNVLEIGPGLGALTEPLLERAA-RVTAIEIDRRLAEVLKERFA---PYDNLTVINGDALKFDFPSLA 94 (259)
T ss_pred HHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhhcC-eEEEEEeCHHHHHHHHHhcc---cccceEEEeCchhcCcchhhc
Confidence 45566666666789999999999999999999987 69999999 88888887765 2345999999999999886
Q ss_pred cccEEEEccc
Q 016351 144 KVDVIISEWM 153 (391)
Q Consensus 144 ~~D~Ivse~~ 153 (391)
.++.|++++.
T Consensus 95 ~~~~vVaNlP 104 (259)
T COG0030 95 QPYKVVANLP 104 (259)
T ss_pred CCCEEEEcCC
Confidence 7899999874
|
|
| >PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed | Back alignment and domain information |
|---|
Probab=98.54 E-value=7.8e-07 Score=88.47 Aligned_cols=113 Identities=17% Similarity=0.076 Sum_probs=88.1
Q ss_pred CCCCCCEEEEECCcccHHHHHHHHc--CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC--CCCcccEEE
Q 016351 75 HHFQGKTVLDVGTGSGILAIWSAQA--GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV--LPEKVDVII 149 (391)
Q Consensus 75 ~~~~~~~VLDlGcGtG~l~~~~a~~--g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~--~~~~~D~Iv 149 (391)
...++.+|||++||.|.-+..+|.. +...|+|+|++ .-+..+++++++.|+.+ |.+.+.|...+. +++.||.|+
T Consensus 110 ~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~n-v~v~~~D~~~~~~~~~~~fD~IL 188 (470)
T PRK11933 110 DDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSN-VALTHFDGRVFGAALPETFDAIL 188 (470)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCe-EEEEeCchhhhhhhchhhcCeEE
Confidence 3467899999999999998888875 23489999999 88999999999999976 889999988753 347899999
Q ss_pred Ecccccccc----Cc---------------chHHHHHHHHhccccCCeEEEcccceeE
Q 016351 150 SEWMGYFLL----RE---------------SMFDSVICARDRWLKPTGVMYPSHARMW 188 (391)
Q Consensus 150 se~~~~~~~----~e---------------~~l~~~l~~~~~~L~~gG~ii~~~~~~~ 188 (391)
.|...+... .. .....+|..+.++|||||+++-+.+++.
T Consensus 189 vDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~~ 246 (470)
T PRK11933 189 LDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTLN 246 (470)
T ss_pred EcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCCC
Confidence 876533211 10 0125678888899999999998877644
|
|
| >PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.54 E-value=2.5e-07 Score=81.43 Aligned_cols=128 Identities=16% Similarity=0.224 Sum_probs=75.7
Q ss_pred cCChHhHHHHHHHHHh-cCC---CCCCCEEEEECCccc----HHHHHHHHc---CC---CeEEEEech-HHHHHHHHHH-
Q 016351 57 LSDRVRMDAYFNSIFQ-NKH---HFQGKTVLDVGTGSG----ILAIWSAQA---GA---RKVYAVEAT-KMSDHARTLV- 120 (391)
Q Consensus 57 l~d~~r~~~~~~~i~~-~~~---~~~~~~VLDlGcGtG----~l~~~~a~~---g~---~~V~avD~s-~~~~~a~~~~- 120 (391)
+.|....+.+.+.+.. .+. ..+..+|+..||+|| .+++.+... .. -+|+|+|+| .+++.|++-+
T Consensus 6 FRd~~~f~~l~~~vlp~~~~~~~~~~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y 85 (196)
T PF01739_consen 6 FRDPEQFEALRDEVLPPLLARARPGRPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIY 85 (196)
T ss_dssp TTTTTHHHHHHHHHH-------CS-S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEE
T ss_pred cCCHHHHHHHHHHHHHhhccccCCCCCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCC
Confidence 3455556666666662 221 124478999999999 456666662 12 279999999 8898887521
Q ss_pred -------------HH-----c--C------CCCcEEEEEccccc-CCCCCcccEEEEccccccccCcchHHHHHHHHhcc
Q 016351 121 -------------KA-----N--N------LQDVVEVIEGSVED-IVLPEKVDVIISEWMGYFLLRESMFDSVICARDRW 173 (391)
Q Consensus 121 -------------~~-----~--~------~~~~v~~i~~d~~~-~~~~~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~ 173 (391)
++ . + +.+.|+|.+.|+.+ .+..++||+|+|..+...+. ......+++.+.+.
T Consensus 86 ~~~~~~~~~~~~~~ryf~~~~~~~~~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~-~~~~~~vl~~l~~~ 164 (196)
T PF01739_consen 86 PERSLRGLPPAYLRRYFTERDGGGYRVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFD-PETQQRVLRRLHRS 164 (196)
T ss_dssp EGGGGTTS-HHHHHHHEEEE-CCCTTE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS--HHHHHHHHHHHGGG
T ss_pred CHHHHhhhHHHHHHHhccccCCCceeEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeC-HHHHHHHHHHHHHH
Confidence 00 0 0 12569999999988 33348999999954433333 33567899999999
Q ss_pred ccCCeEEEcccc
Q 016351 174 LKPTGVMYPSHA 185 (391)
Q Consensus 174 L~~gG~ii~~~~ 185 (391)
|+|||.++....
T Consensus 165 L~pgG~L~lG~s 176 (196)
T PF01739_consen 165 LKPGGYLFLGHS 176 (196)
T ss_dssp EEEEEEEEE-TT
T ss_pred cCCCCEEEEecC
Confidence 999999986644
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A. |
| >PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2 | Back alignment and domain information |
|---|
Probab=98.54 E-value=4.7e-07 Score=82.93 Aligned_cols=107 Identities=24% Similarity=0.209 Sum_probs=79.9
Q ss_pred CCCEEEEECCcccHHHHHHHHcC-CCeEEEEech-HHHHHHHHHHHHcCC---CCcEEEEEcccccCC--CCC-cccEEE
Q 016351 78 QGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEAT-KMSDHARTLVKANNL---QDVVEVIEGSVEDIV--LPE-KVDVII 149 (391)
Q Consensus 78 ~~~~VLDlGcGtG~l~~~~a~~g-~~~V~avD~s-~~~~~a~~~~~~~~~---~~~v~~i~~d~~~~~--~~~-~~D~Iv 149 (391)
+.++||-||.|.|..+..+.+.. ..+|+.||++ .+++.|++.+..... ..+++++.+|...+- ..+ +||+|+
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvIi 155 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVII 155 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEEE
T ss_pred CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEEE
Confidence 56899999999999999998874 5689999999 899999998765332 357999999998752 235 899999
Q ss_pred EccccccccCcc-hHHHHHHHHhccccCCeEEEccc
Q 016351 150 SEWMGYFLLRES-MFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 150 se~~~~~~~~e~-~l~~~l~~~~~~L~~gG~ii~~~ 184 (391)
.+.......... .-..+++.+++.|+|+|+++...
T Consensus 156 ~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~ 191 (246)
T PF01564_consen 156 VDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQA 191 (246)
T ss_dssp EESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred EeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEc
Confidence 977543222111 13578899999999999988654
|
5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B .... |
| >KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.53 E-value=6.8e-07 Score=78.70 Aligned_cols=107 Identities=20% Similarity=0.167 Sum_probs=85.2
Q ss_pred CCCCEEEEECCcccHHHHHHHHc--CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccC------CC-CCccc
Q 016351 77 FQGKTVLDVGTGSGILAIWSAQA--GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDI------VL-PEKVD 146 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~l~~~~a~~--g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~------~~-~~~~D 146 (391)
...+++||||.-||.-++..|.+ --.+|+++|++ ...+.+.+..+..|..++|++++++..+. .. .+.||
T Consensus 72 ~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tfD 151 (237)
T KOG1663|consen 72 LNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTFD 151 (237)
T ss_pred hCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCcee
Confidence 46789999999999988888776 22389999999 89999999999999999999999987663 11 37899
Q ss_pred EEEEccccccccCcchHHHHHHHHhccccCCeEEEcccceeEE
Q 016351 147 VIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHARMWV 189 (391)
Q Consensus 147 ~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~~~~~~ 189 (391)
+++.+. . ......++..+.++|++||+++.....+..
T Consensus 152 faFvDa---d---K~nY~~y~e~~l~Llr~GGvi~~DNvl~~G 188 (237)
T KOG1663|consen 152 FAFVDA---D---KDNYSNYYERLLRLLRVGGVIVVDNVLWPG 188 (237)
T ss_pred EEEEcc---c---hHHHHHHHHHHHhhcccccEEEEeccccCC
Confidence 999743 1 112235677788999999999887765555
|
|
| >PLN02232 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=98.52 E-value=2.4e-07 Score=79.24 Aligned_cols=77 Identities=17% Similarity=0.073 Sum_probs=59.8
Q ss_pred EEEech-HHHHHHHHHHHHcC--CCCcEEEEEcccccCCCC-CcccEEEEccccccccCcchHHHHHHHHhccccCCeEE
Q 016351 105 YAVEAT-KMSDHARTLVKANN--LQDVVEVIEGSVEDIVLP-EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVM 180 (391)
Q Consensus 105 ~avD~s-~~~~~a~~~~~~~~--~~~~v~~i~~d~~~~~~~-~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~i 180 (391)
+|+|+| +|++.|+++.+..+ ..++|+++++|+.+++++ ++||+|++.. .+.+-.+...+++++.|+|||||.+
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~---~l~~~~d~~~~l~ei~rvLkpGG~l 77 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGY---GLRNVVDRLRAMKEMYRVLKPGSRV 77 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecc---hhhcCCCHHHHHHHHHHHcCcCeEE
Confidence 489999 99999987765322 234599999999999876 6899999843 2333346778999999999999999
Q ss_pred Eccc
Q 016351 181 YPSH 184 (391)
Q Consensus 181 i~~~ 184 (391)
++..
T Consensus 78 ~i~d 81 (160)
T PLN02232 78 SILD 81 (160)
T ss_pred EEEE
Confidence 7553
|
|
| >PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=98.48 E-value=2.3e-06 Score=78.10 Aligned_cols=112 Identities=14% Similarity=0.188 Sum_probs=86.6
Q ss_pred CCCCEEEEECCcccHHHHHHHHc-C--CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC----CCCcccEE
Q 016351 77 FQGKTVLDVGTGSGILAIWSAQA-G--ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV----LPEKVDVI 148 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~l~~~~a~~-g--~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~----~~~~~D~I 148 (391)
...-+||||.||.|...+-+... . ..+|...|.| ..++..++.++..|+.+.++|.++|+.+.. +.-+.+++
T Consensus 134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~ 213 (311)
T PF12147_consen 134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLA 213 (311)
T ss_pred CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEE
Confidence 35579999999999987766654 3 3589999999 789999999999999998899999987742 22457888
Q ss_pred EEccccccccCcchHHHHHHHHhccccCCeEEEcccceeE
Q 016351 149 ISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHARMW 188 (391)
Q Consensus 149 vse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~~~~~ 188 (391)
+...+...+.....+...+..+.+.+.|||++|.....++
T Consensus 214 iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwH 253 (311)
T PF12147_consen 214 IVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWH 253 (311)
T ss_pred EEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCC
Confidence 7755444444434567778899999999999996654444
|
It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily. |
| >PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=98.48 E-value=7.1e-07 Score=78.12 Aligned_cols=103 Identities=21% Similarity=0.277 Sum_probs=78.1
Q ss_pred EEEEECCcccHHHHHHHHcCC-CeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC---------CCcccEEE
Q 016351 81 TVLDVGTGSGILAIWSAQAGA-RKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL---------PEKVDVII 149 (391)
Q Consensus 81 ~VLDlGcGtG~l~~~~a~~g~-~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~---------~~~~D~Iv 149 (391)
+|||||||||..+..+|++-. -+..-.|.+ ......+..+...++++...-+..|+..-.. ++.||.|+
T Consensus 28 ~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~i~ 107 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDAIF 107 (204)
T ss_pred eEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCcceee
Confidence 699999999999999998733 345667887 5556777777788887765666667665421 25899999
Q ss_pred EccccccccCcchHHHHHHHHhccccCCeEEEccc
Q 016351 150 SEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 150 se~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~ 184 (391)
|-.|.++..++ ....++..+.++|++||.++...
T Consensus 108 ~~N~lHI~p~~-~~~~lf~~a~~~L~~gG~L~~YG 141 (204)
T PF06080_consen 108 CINMLHISPWS-AVEGLFAGAARLLKPGGLLFLYG 141 (204)
T ss_pred ehhHHHhcCHH-HHHHHHHHHHHhCCCCCEEEEeC
Confidence 96666766665 46788999999999999988543
|
The function of this family is unknown. |
| >COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.46 E-value=7.7e-07 Score=78.87 Aligned_cols=106 Identities=25% Similarity=0.267 Sum_probs=75.9
Q ss_pred HHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEE-EcccccCCC-
Q 016351 65 AYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVI-EGSVEDIVL- 141 (391)
Q Consensus 65 ~~~~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i-~~d~~~~~~- 141 (391)
.+..++...--..+++++||||+-||.++..+.+.||++|+|||.. ..+.+--+. ..+|..+ ..+++.+..
T Consensus 66 KL~~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kLR~------d~rV~~~E~tN~r~l~~~ 139 (245)
T COG1189 66 KLEKALEEFELDVKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKLRN------DPRVIVLERTNVRYLTPE 139 (245)
T ss_pred HHHHHHHhcCcCCCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhHhc------CCcEEEEecCChhhCCHH
Confidence 3345555544456889999999999999999999999999999998 654432211 1234443 346666543
Q ss_pred --CCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEc
Q 016351 142 --PEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 142 --~~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~ 182 (391)
.+..|+++|+. ++. .+..++..+..++++++.+++
T Consensus 140 ~~~~~~d~~v~Dv--SFI----SL~~iLp~l~~l~~~~~~~v~ 176 (245)
T COG1189 140 DFTEKPDLIVIDV--SFI----SLKLILPALLLLLKDGGDLVL 176 (245)
T ss_pred HcccCCCeEEEEe--ehh----hHHHHHHHHHHhcCCCceEEE
Confidence 36789999975 222 367788889999999997763
|
|
| >PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2 | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.1e-06 Score=84.96 Aligned_cols=92 Identities=27% Similarity=0.319 Sum_probs=62.8
Q ss_pred HHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC
Q 016351 63 MDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL 141 (391)
Q Consensus 63 ~~~~~~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~ 141 (391)
++.+.+.+...+...++ .|||+-||+|.+++.+|+... +|+|||.+ .+++.|+++++.|++.+ ++|+.+++.++..
T Consensus 182 ~~~l~~~~~~~l~~~~~-~vlDlycG~G~fsl~la~~~~-~V~gvE~~~~av~~A~~Na~~N~i~n-~~f~~~~~~~~~~ 258 (352)
T PF05958_consen 182 NEKLYEQALEWLDLSKG-DVLDLYCGVGTFSLPLAKKAK-KVIGVEIVEEAVEDARENAKLNGIDN-VEFIRGDAEDFAK 258 (352)
T ss_dssp HHHHHHHHHHHCTT-TT-EEEEES-TTTCCHHHHHCCSS-EEEEEES-HHHHHHHHHHHHHTT--S-EEEEE--SHHCCC
T ss_pred HHHHHHHHHHHhhcCCC-cEEEEeecCCHHHHHHHhhCC-eEEEeeCCHHHHHHHHHHHHHcCCCc-ceEEEeeccchhH
Confidence 34444545555554444 799999999999999998755 89999999 99999999999999976 9999987765421
Q ss_pred ----------------C-CcccEEEEccccccc
Q 016351 142 ----------------P-EKVDVIISEWMGYFL 157 (391)
Q Consensus 142 ----------------~-~~~D~Ivse~~~~~~ 157 (391)
. ..+|+|+.++.-.++
T Consensus 259 ~~~~~r~~~~~~~~~~~~~~~d~vilDPPR~G~ 291 (352)
T PF05958_consen 259 ALAKAREFNRLKGIDLKSFKFDAVILDPPRAGL 291 (352)
T ss_dssp HHCCS-GGTTGGGS-GGCTTESEEEE---TT-S
T ss_pred HHHhhHHHHhhhhhhhhhcCCCEEEEcCCCCCc
Confidence 1 268999998865544
|
1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B. |
| >KOG2940 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.43 E-value=3.6e-07 Score=79.95 Aligned_cols=99 Identities=21% Similarity=0.283 Sum_probs=80.4
Q ss_pred CCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-CcccEEEEcccccc
Q 016351 79 GKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIISEWMGYF 156 (391)
Q Consensus 79 ~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~-~~~D~Ivse~~~~~ 156 (391)
...++||||+-|.+...+...+..+++-+|.| .|++.++. ++.+++. +....+|-+.+++. .++|+|++.. .
T Consensus 73 fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~-~qdp~i~--~~~~v~DEE~Ldf~ens~DLiisSl---s 146 (325)
T KOG2940|consen 73 FPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRD-AQDPSIE--TSYFVGDEEFLDFKENSVDLIISSL---S 146 (325)
T ss_pred CcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhc-cCCCceE--EEEEecchhcccccccchhhhhhhh---h
Confidence 46799999999999999998888899999999 99988765 3335544 67778888888876 7999999843 3
Q ss_pred ccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 157 LLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 157 ~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
+++.++++..+..++..|||+|.||-+
T Consensus 147 lHW~NdLPg~m~~ck~~lKPDg~Fias 173 (325)
T KOG2940|consen 147 LHWTNDLPGSMIQCKLALKPDGLFIAS 173 (325)
T ss_pred hhhhccCchHHHHHHHhcCCCccchhH
Confidence 445567788888899999999998843
|
|
| >PRK10611 chemotaxis methyltransferase CheR; Provisional | Back alignment and domain information |
|---|
Probab=98.42 E-value=7.4e-07 Score=82.96 Aligned_cols=106 Identities=18% Similarity=0.272 Sum_probs=76.5
Q ss_pred CCEEEEECCccc----HHHHHHHHcC-----CCeEEEEech-HHHHHHHHHH------------------HH-----cC-
Q 016351 79 GKTVLDVGTGSG----ILAIWSAQAG-----ARKVYAVEAT-KMSDHARTLV------------------KA-----NN- 124 (391)
Q Consensus 79 ~~~VLDlGcGtG----~l~~~~a~~g-----~~~V~avD~s-~~~~~a~~~~------------------~~-----~~- 124 (391)
..+|+..||.|| .+++.+.+.+ .-+|+|+|+| .+++.|++-+ .. .+
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~ 195 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL 195 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence 369999999999 4566666642 1279999999 8999887642 00 01
Q ss_pred ------CCCcEEEEEcccccCCC--CCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcccc
Q 016351 125 ------LQDVVEVIEGSVEDIVL--PEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 125 ------~~~~v~~i~~d~~~~~~--~~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~~ 185 (391)
+.+.|+|.+.|+.+.+. .++||+|+|..+...+.. .....++..+.+.|+|||.++....
T Consensus 196 ~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~-~~~~~vl~~l~~~L~pgG~L~lG~s 263 (287)
T PRK10611 196 VRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDK-TTQERILRRFVPLLKPDGLLFAGHS 263 (287)
T ss_pred EEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCH-HHHHHHHHHHHHHhCCCcEEEEeCc
Confidence 33568899999887543 389999999544333332 3567899999999999999886543
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.41 E-value=2.1e-06 Score=90.34 Aligned_cols=118 Identities=21% Similarity=0.222 Sum_probs=84.4
Q ss_pred HHHHHHHHHhcCCC-CCCCEEEEECCcccHHHHHHHHcC-----------------------------------------
Q 016351 63 MDAYFNSIFQNKHH-FQGKTVLDVGTGSGILAIWSAQAG----------------------------------------- 100 (391)
Q Consensus 63 ~~~~~~~i~~~~~~-~~~~~VLDlGcGtG~l~~~~a~~g----------------------------------------- 100 (391)
.+.+..+|...... .++..++|-+||+|.+.+.+|...
T Consensus 174 ~etlAaa~l~~a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~ 253 (702)
T PRK11783 174 KENLAAAILLRSGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLA 253 (702)
T ss_pred cHHHHHHHHHHcCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhccc
Confidence 45666677766554 456899999999999988876521
Q ss_pred --CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC---CcccEEEEccc-cccccCcchHHHHHHHHhcc
Q 016351 101 --ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP---EKVDVIISEWM-GYFLLRESMFDSVICARDRW 173 (391)
Q Consensus 101 --~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~---~~~D~Ivse~~-~~~~~~e~~l~~~l~~~~~~ 173 (391)
..+++|+|++ .++..|++++..+|+.+.|++.++|+.++..+ +++|+|++++. +.-+..+..+..+...+.+.
T Consensus 254 ~~~~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~ 333 (702)
T PRK11783 254 ELPSKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRR 333 (702)
T ss_pred ccCceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHH
Confidence 1269999999 99999999999999998899999999988654 46999999874 22222223344444444333
Q ss_pred cc---CCeEE
Q 016351 174 LK---PTGVM 180 (391)
Q Consensus 174 L~---~gG~i 180 (391)
|+ +|+.+
T Consensus 334 lk~~~~g~~~ 343 (702)
T PRK11783 334 LKQQFGGWNA 343 (702)
T ss_pred HHHhCCCCeE
Confidence 33 66544
|
|
| >COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.40 E-value=2.4e-06 Score=76.83 Aligned_cols=103 Identities=19% Similarity=0.280 Sum_probs=78.7
Q ss_pred CEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC---CC-CcccEEEEccc
Q 016351 80 KTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV---LP-EKVDVIISEWM 153 (391)
Q Consensus 80 ~~VLDlGcGtG~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~---~~-~~~D~Ivse~~ 153 (391)
..+||||||.|.+...+|+. ....++|||+. ..+..|.+.+.+.++.| +.+++.|+..+. .+ ++.|-|.....
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~N-lri~~~DA~~~l~~~~~~~sl~~I~i~FP 128 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKN-LRLLCGDAVEVLDYLIPDGSLDKIYINFP 128 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCc-EEEEcCCHHHHHHhcCCCCCeeEEEEECC
Confidence 58999999999998888877 44579999999 88999999999999964 999999998852 23 48888876332
Q ss_pred ccccc--Cc---chHHHHHHHHhccccCCeEEEcc
Q 016351 154 GYFLL--RE---SMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 154 ~~~~~--~e---~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
+...- ++ -..+.+++.+.+.|+|||.+.+.
T Consensus 129 DPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~a 163 (227)
T COG0220 129 DPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFA 163 (227)
T ss_pred CCCCCccccccccCCHHHHHHHHHHccCCCEEEEE
Confidence 22111 10 12467889999999999988754
|
|
| >PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes | Back alignment and domain information |
|---|
Probab=98.39 E-value=8.4e-07 Score=79.91 Aligned_cols=97 Identities=27% Similarity=0.278 Sum_probs=69.6
Q ss_pred CCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC-CCCcccEEEEccccc
Q 016351 78 QGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV-LPEKVDVIISEWMGY 155 (391)
Q Consensus 78 ~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~-~~~~~D~Ivse~~~~ 155 (391)
...++||||+|.|..+..++.. .++|++.|.| .|.. +.++.|+ +++.. .++. .+.+||+|.| ..
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~-f~~v~aTE~S~~Mr~----rL~~kg~----~vl~~--~~w~~~~~~fDvIsc---LN 159 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPL-FKEVYATEASPPMRW----RLSKKGF----TVLDI--DDWQQTDFKFDVISC---LN 159 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhh-cceEEeecCCHHHHH----HHHhCCC----eEEeh--hhhhccCCceEEEee---hh
Confidence 3468999999999999999886 4479999999 7743 3444453 44432 2232 2368999998 23
Q ss_pred cccCcchHHHHHHHHhccccCCeEEEcccceeE
Q 016351 156 FLLRESMFDSVICARDRWLKPTGVMYPSHARMW 188 (391)
Q Consensus 156 ~~~~e~~l~~~l~~~~~~L~~gG~ii~~~~~~~ 188 (391)
.++.-..+..+++.+++.|+|+|++|....-.+
T Consensus 160 vLDRc~~P~~LL~~i~~~l~p~G~lilAvVlP~ 192 (265)
T PF05219_consen 160 VLDRCDRPLTLLRDIRRALKPNGRLILAVVLPF 192 (265)
T ss_pred hhhccCCHHHHHHHHHHHhCCCCEEEEEEEecc
Confidence 344445678899999999999999886644333
|
The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases. |
| >COG3963 Phospholipid N-methyltransferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=98.38 E-value=2.5e-06 Score=71.27 Aligned_cols=112 Identities=19% Similarity=0.171 Sum_probs=82.2
Q ss_pred HHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCC--CeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC-
Q 016351 65 AYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGA--RKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV- 140 (391)
Q Consensus 65 ~~~~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g~--~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~- 140 (391)
...+.+...+....+.-||++|.|||.++..+.++|. ..+++||.| +......+... .++++++|..++.
T Consensus 35 ~lA~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p------~~~ii~gda~~l~~ 108 (194)
T COG3963 35 ILARKMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYP------GVNIINGDAFDLRT 108 (194)
T ss_pred HHHHHHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCC------CccccccchhhHHH
Confidence 3345566666667788999999999999999999874 379999999 88776665543 2789999998875
Q ss_pred -C----CCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 141 -L----PEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 141 -~----~~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
+ ...||.|||-...-.+... .--.+++.+...|..||.++--
T Consensus 109 ~l~e~~gq~~D~viS~lPll~~P~~-~~iaile~~~~rl~~gg~lvqf 155 (194)
T COG3963 109 TLGEHKGQFFDSVISGLPLLNFPMH-RRIAILESLLYRLPAGGPLVQF 155 (194)
T ss_pred HHhhcCCCeeeeEEeccccccCcHH-HHHHHHHHHHHhcCCCCeEEEE
Confidence 1 2679999995422122221 2346788888889999988843
|
|
| >COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.36 E-value=2.8e-06 Score=78.14 Aligned_cols=129 Identities=16% Similarity=0.233 Sum_probs=88.3
Q ss_pred hcCChHhHHHHHHHHHhcC-CCC--CCCEEEEECCccc----HHHHHHHHcCC------CeEEEEech-HHHHHHHHHHH
Q 016351 56 MLSDRVRMDAYFNSIFQNK-HHF--QGKTVLDVGTGSG----ILAIWSAQAGA------RKVYAVEAT-KMSDHARTLVK 121 (391)
Q Consensus 56 ml~d~~r~~~~~~~i~~~~-~~~--~~~~VLDlGcGtG----~l~~~~a~~g~------~~V~avD~s-~~~~~a~~~~~ 121 (391)
++.+....+.+.+.+...+ ... ..-+|+.+||+|| .+++.+.+.+. -+|+|+|++ .+++.|+.-+=
T Consensus 71 FFR~~~~f~~l~~~v~p~l~~~~~~~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y 150 (268)
T COG1352 71 FFRDPEHFEELRDEVLPELVKRKKGRPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIY 150 (268)
T ss_pred hccCcHHHHHHHHHHHHHHHhhccCCceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCC
Confidence 4556666666666665422 111 2578999999999 56677777642 379999999 89988865211
Q ss_pred H-----cC-----------------------CCCcEEEEEcccccCC-CCCcccEEEEccccccccCcchHHHHHHHHhc
Q 016351 122 A-----NN-----------------------LQDVVEVIEGSVEDIV-LPEKVDVIISEWMGYFLLRESMFDSVICARDR 172 (391)
Q Consensus 122 ~-----~~-----------------------~~~~v~~i~~d~~~~~-~~~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~ 172 (391)
. .+ +.+.|.|-..|+.+-. .+++||+|+|..+...+.. .....++.....
T Consensus 151 ~~~~~~~~~~~~~~~ryF~~~~~~~y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~-~~q~~il~~f~~ 229 (268)
T COG1352 151 PSRELLRGLPPELLRRYFERGGDGSYRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDE-ETQERILRRFAD 229 (268)
T ss_pred ChhHhhccCCHHHHhhhEeecCCCcEEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCH-HHHHHHHHHHHH
Confidence 1 11 1235777778877765 5688999999544333333 356788999999
Q ss_pred cccCCeEEEcccc
Q 016351 173 WLKPTGVMYPSHA 185 (391)
Q Consensus 173 ~L~~gG~ii~~~~ 185 (391)
.|+|||.++.-..
T Consensus 230 ~L~~gG~LflG~s 242 (268)
T COG1352 230 SLKPGGLLFLGHS 242 (268)
T ss_pred HhCCCCEEEEccC
Confidence 9999999886543
|
|
| >PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
Probab=98.29 E-value=5.6e-06 Score=73.41 Aligned_cols=95 Identities=27% Similarity=0.356 Sum_probs=67.1
Q ss_pred EEEECCcccHHHHHHHHcCC-CeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-CcccEEEEcccccccc
Q 016351 82 VLDVGTGSGILAIWSAQAGA-RKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIISEWMGYFLL 158 (391)
Q Consensus 82 VLDlGcGtG~l~~~~a~~g~-~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~-~~~D~Ivse~~~~~~~ 158 (391)
|.||||-.|.+++.+.+.|. .+|+|+|++ .-++.|+++++..++.++|+++.+|-.+.-.+ +..|+|+.-.||..
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~~e~~d~ivIAGMGG~-- 78 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKPGEDVDTIVIAGMGGE-- 78 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--GGG---EEEEEEE-HH--
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCCCCCCCEEEEecCCHH--
Confidence 68999999999999999974 479999999 88999999999999999999999997664334 44899987666544
Q ss_pred CcchHHHHHHHHhccccCCeEEE
Q 016351 159 RESMFDSVICARDRWLKPTGVMY 181 (391)
Q Consensus 159 ~e~~l~~~l~~~~~~L~~gG~ii 181 (391)
....++.+....++....+|
T Consensus 79 ---lI~~ILe~~~~~~~~~~~lI 98 (205)
T PF04816_consen 79 ---LIIEILEAGPEKLSSAKRLI 98 (205)
T ss_dssp ---HHHHHHHHTGGGGTT--EEE
T ss_pred ---HHHHHHHhhHHHhccCCeEE
Confidence 24556666655555443444
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B. |
| >KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.27 E-value=3.1e-06 Score=73.38 Aligned_cols=97 Identities=23% Similarity=0.266 Sum_probs=70.9
Q ss_pred CCCCCEEEEECCcccHHHHHHHHc-CCC--eEEEEech-HHHHHHHHHHHHcC--------C-CCcEEEEEcccccCCCC
Q 016351 76 HFQGKTVLDVGTGSGILAIWSAQA-GAR--KVYAVEAT-KMSDHARTLVKANN--------L-QDVVEVIEGSVEDIVLP 142 (391)
Q Consensus 76 ~~~~~~VLDlGcGtG~l~~~~a~~-g~~--~V~avD~s-~~~~~a~~~~~~~~--------~-~~~v~~i~~d~~~~~~~ 142 (391)
..++...||+|.|||.|+.++++. |+. .+.|||.- +.++.+++++...- + ..++.++.+|.+....+
T Consensus 80 L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~e 159 (237)
T KOG1661|consen 80 LQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYAE 159 (237)
T ss_pred hccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCCc
Confidence 468899999999999999988865 432 34899988 89999999887653 1 13488999999997665
Q ss_pred -CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEE
Q 016351 143 -EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMY 181 (391)
Q Consensus 143 -~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii 181 (391)
.+||.|.+-. . . ..+.+++...|++||.++
T Consensus 160 ~a~YDaIhvGA---a--a----~~~pq~l~dqL~~gGrll 190 (237)
T KOG1661|consen 160 QAPYDAIHVGA---A--A----SELPQELLDQLKPGGRLL 190 (237)
T ss_pred cCCcceEEEcc---C--c----cccHHHHHHhhccCCeEE
Confidence 7999999732 1 1 122334445577777665
|
|
| >PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases | Back alignment and domain information |
|---|
Probab=98.27 E-value=3.8e-06 Score=73.27 Aligned_cols=86 Identities=26% Similarity=0.348 Sum_probs=53.4
Q ss_pred CCCEEEEECCcccHHHHHHHHcCCCeEEEEechHHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-CcccEEEEc--ccc
Q 016351 78 QGKTVLDVGTGSGILAIWSAQAGARKVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIISE--WMG 154 (391)
Q Consensus 78 ~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~-~~~D~Ivse--~~~ 154 (391)
+..+|.|+|||.+.++..+. .+. +|...|+-+ .| -.++.+|+.+++++ +.+|++|+- +|+
T Consensus 72 ~~~viaD~GCGdA~la~~~~-~~~-~V~SfDLva----------~n-----~~Vtacdia~vPL~~~svDv~VfcLSLMG 134 (219)
T PF05148_consen 72 KSLVIADFGCGDAKLAKAVP-NKH-KVHSFDLVA----------PN-----PRVTACDIANVPLEDESVDVAVFCLSLMG 134 (219)
T ss_dssp TTS-EEEES-TT-HHHHH---S----EEEEESS-----------SS-----TTEEES-TTS-S--TT-EEEEEEES---S
T ss_pred CCEEEEECCCchHHHHHhcc-cCc-eEEEeeccC----------CC-----CCEEEecCccCcCCCCceeEEEEEhhhhC
Confidence 45799999999999985443 333 599999852 11 14677999999988 899998862 232
Q ss_pred ccccCcchHHHHHHHHhccccCCeEEEcccce
Q 016351 155 YFLLRESMFDSVICARDRWLKPTGVMYPSHAR 186 (391)
Q Consensus 155 ~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~~~ 186 (391)
. .+..++.++.|.||+||.+.+....
T Consensus 135 T------n~~~fi~EA~RvLK~~G~L~IAEV~ 160 (219)
T PF05148_consen 135 T------NWPDFIREANRVLKPGGILKIAEVK 160 (219)
T ss_dssp S-------HHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred C------CcHHHHHHHHheeccCcEEEEEEec
Confidence 2 4678899999999999998765443
|
; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B. |
| >PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=98.25 E-value=1.3e-05 Score=73.70 Aligned_cols=102 Identities=23% Similarity=0.235 Sum_probs=75.9
Q ss_pred CCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHH----cC----------------------------
Q 016351 78 QGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKA----NN---------------------------- 124 (391)
Q Consensus 78 ~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~----~~---------------------------- 124 (391)
.+.+||--|||.|.|+..+|+.|. .+.|.|.| -|+-..+-.... +.
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~G~-~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPDv 134 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKLGY-AVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPDV 134 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhccc-eEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCCc
Confidence 347899999999999999999999 79999999 886554443331 00
Q ss_pred -------CCCcEEEEEcccccCCCC----CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 125 -------LQDVVEVIEGSVEDIVLP----EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 125 -------~~~~v~~i~~d~~~~~~~----~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
-..+.....||+.++-.+ ++||+|++ .++++....+-.+++.+.++|||||+.|-.
T Consensus 135 ~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT---~FFIDTA~Ni~~Yi~tI~~lLkpgG~WIN~ 201 (270)
T PF07942_consen 135 DPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVT---CFFIDTAENIIEYIETIEHLLKPGGYWINF 201 (270)
T ss_pred CcccccCCCCceeEecCccEEecCCcccCCcccEEEE---EEEeechHHHHHHHHHHHHHhccCCEEEec
Confidence 012355666777665433 58999997 466776666778899999999999977733
|
This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions []. |
| >PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 [] | Back alignment and domain information |
|---|
Probab=98.25 E-value=7.4e-06 Score=72.66 Aligned_cols=108 Identities=22% Similarity=0.286 Sum_probs=61.9
Q ss_pred HHhcCCCCCCCEEEEECCcccHHHHHHH-HcCCCeEEEEech-HHHHHHHHHH-------HHcCC-CCcEEEEEcccccC
Q 016351 70 IFQNKHHFQGKTVLDVGTGSGILAIWSA-QAGARKVYAVEAT-KMSDHARTLV-------KANNL-QDVVEVIEGSVEDI 139 (391)
Q Consensus 70 i~~~~~~~~~~~VLDlGcGtG~l~~~~a-~~g~~~V~avD~s-~~~~~a~~~~-------~~~~~-~~~v~~i~~d~~~~ 139 (391)
|.+.+...++.+.+|||||.|...+.+| ..+.++++|||+. ...+.|+... +..|. ..++++.++|+.+.
T Consensus 34 il~~~~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~ 113 (205)
T PF08123_consen 34 ILDELNLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDP 113 (205)
T ss_dssp HHHHTT--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTH
T ss_pred HHHHhCCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCcccc
Confidence 3344555678899999999999877655 4588789999998 6655554422 23343 24589999998774
Q ss_pred CCC----CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEE
Q 016351 140 VLP----EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMY 181 (391)
Q Consensus 140 ~~~----~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii 181 (391)
+.. ...|+|+++.. ...+ .+..-+......||+|.++|
T Consensus 114 ~~~~~~~s~AdvVf~Nn~---~F~~-~l~~~L~~~~~~lk~G~~II 155 (205)
T PF08123_consen 114 DFVKDIWSDADVVFVNNT---CFDP-DLNLALAELLLELKPGARII 155 (205)
T ss_dssp HHHHHHGHC-SEEEE--T---TT-H-HHHHHHHHHHTTS-TT-EEE
T ss_pred HhHhhhhcCCCEEEEecc---ccCH-HHHHHHHHHHhcCCCCCEEE
Confidence 321 46899998543 2233 34444566667789998887
|
H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A .... |
| >PRK00536 speE spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.20 E-value=1.3e-05 Score=73.60 Aligned_cols=102 Identities=22% Similarity=0.032 Sum_probs=77.3
Q ss_pred CCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHc--CCC-CcEEEEEcccccCCCCCcccEEEEccc
Q 016351 78 QGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKAN--NLQ-DVVEVIEGSVEDIVLPEKVDVIISEWM 153 (391)
Q Consensus 78 ~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~--~~~-~~v~~i~~d~~~~~~~~~~D~Ivse~~ 153 (391)
..++||-||.|.|..+..+.|+.. +|+-||++ .+++.+++..... +++ .+++++.. +.+. ..++||+||++..
T Consensus 72 ~pk~VLIiGGGDGg~~REvLkh~~-~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~~~-~~~~fDVIIvDs~ 148 (262)
T PRK00536 72 ELKEVLIVDGFDLELAHQLFKYDT-HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LLDL-DIKKYDLIICLQE 148 (262)
T ss_pred CCCeEEEEcCCchHHHHHHHCcCC-eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hhhc-cCCcCCEEEEcCC
Confidence 458999999999999999999964 89999999 8999999854432 232 46888762 2221 1378999999753
Q ss_pred cccccCcchHHHHHHHHhccccCCeEEEcccceeEEe
Q 016351 154 GYFLLRESMFDSVICARDRWLKPTGVMYPSHARMWVA 190 (391)
Q Consensus 154 ~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~~~~~~~ 190 (391)
. -+.+.+.+++.|+|||+++....+.+..
T Consensus 149 ----~----~~~fy~~~~~~L~~~Gi~v~Qs~sp~~~ 177 (262)
T PRK00536 149 ----P----DIHKIDGLKRMLKEDGVFISVAKHPLLE 177 (262)
T ss_pred ----C----ChHHHHHHHHhcCCCcEEEECCCCcccC
Confidence 1 1456788999999999999887766653
|
|
| >KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.17 E-value=2e-05 Score=70.98 Aligned_cols=104 Identities=24% Similarity=0.249 Sum_probs=82.3
Q ss_pred HHHHhcCCCCCCCEEEEECCcccHHHHHHHHc--CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC--
Q 016351 68 NSIFQNKHHFQGKTVLDVGTGSGILAIWSAQA--GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-- 142 (391)
Q Consensus 68 ~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~--g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~-- 142 (391)
..|...+...++.+||+-|+|+|.++.+++++ .-.|++..|.. .-++.|++.++..++.+++++.+.|+....+.
T Consensus 95 a~I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~~k 174 (314)
T KOG2915|consen 95 AMILSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFLIK 174 (314)
T ss_pred HHHHHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCcccc
Confidence 34666677789999999999999999999997 33589999999 78899999999999999999999999876544
Q ss_pred -CcccEEEEccccccccCcchHHHHHHHHhccccCCeE
Q 016351 143 -EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGV 179 (391)
Q Consensus 143 -~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ 179 (391)
..+|.|+.++.... + .++ .+.+.||.+|.
T Consensus 175 s~~aDaVFLDlPaPw---~-AiP----ha~~~lk~~g~ 204 (314)
T KOG2915|consen 175 SLKADAVFLDLPAPW---E-AIP----HAAKILKDEGG 204 (314)
T ss_pred ccccceEEEcCCChh---h-hhh----hhHHHhhhcCc
Confidence 68999998764322 2 222 33346777763
|
|
| >PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional | Back alignment and domain information |
|---|
Probab=98.15 E-value=6.5e-06 Score=76.91 Aligned_cols=81 Identities=16% Similarity=0.159 Sum_probs=64.6
Q ss_pred HHHhcCCCCCCCEEEEECCcccHHHHHHHHcC--CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC--CCC
Q 016351 69 SIFQNKHHFQGKTVLDVGTGSGILAIWSAQAG--ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV--LPE 143 (391)
Q Consensus 69 ~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g--~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~--~~~ 143 (391)
.+...+...++..+||.+||.|..+..+++.. ..+|+|+|.+ .+++.|++.+.. .++++++++|+.++. +++
T Consensus 10 Evl~~L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~---~~ri~~i~~~f~~l~~~l~~ 86 (296)
T PRK00050 10 EVVDALAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP---FGRFTLVHGNFSNLKEVLAE 86 (296)
T ss_pred HHHHhhCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc---CCcEEEEeCCHHHHHHHHHc
Confidence 34444445577899999999999999999884 3589999999 999999987754 356999999998863 122
Q ss_pred ---cccEEEEcc
Q 016351 144 ---KVDVIISEW 152 (391)
Q Consensus 144 ---~~D~Ivse~ 152 (391)
++|.|+.++
T Consensus 87 ~~~~vDgIl~DL 98 (296)
T PRK00050 87 GLGKVDGILLDL 98 (296)
T ss_pred CCCccCEEEECC
Confidence 799999865
|
|
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=98.15 E-value=1.9e-06 Score=84.13 Aligned_cols=117 Identities=17% Similarity=0.248 Sum_probs=72.1
Q ss_pred HHHHHHHHHhcCCC--CCC--CEEEEECCcccHHHHHHHHcCCCeEEEEech----HHHHHHHHHHHHcCCCCcEEEEEc
Q 016351 63 MDAYFNSIFQNKHH--FQG--KTVLDVGTGSGILAIWSAQAGARKVYAVEAT----KMSDHARTLVKANNLQDVVEVIEG 134 (391)
Q Consensus 63 ~~~~~~~i~~~~~~--~~~--~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s----~~~~~a~~~~~~~~~~~~v~~i~~ 134 (391)
...|.+.|.+.++. ..+ .++||+|||+|.++..+...+.. +..+-.+ ..++.| .+-|+.--+.+ .
T Consensus 98 a~~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~V~-t~s~a~~d~~~~qvqfa----leRGvpa~~~~--~ 170 (506)
T PF03141_consen 98 ADHYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERNVT-TMSFAPNDEHEAQVQFA----LERGVPAMIGV--L 170 (506)
T ss_pred HHHHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhCCce-EEEcccccCCchhhhhh----hhcCcchhhhh--h
Confidence 34666667666654 222 67999999999999999988652 3333222 233333 33444321211 1
Q ss_pred ccccCCCC-CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcccceeE
Q 016351 135 SVEDIVLP-EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHARMW 188 (391)
Q Consensus 135 d~~~~~~~-~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~~~~~ 188 (391)
-...++++ +.||+|.|.-...-+... -..++-++.|+|+|||+++.+....+
T Consensus 171 ~s~rLPfp~~~fDmvHcsrc~i~W~~~--~g~~l~evdRvLRpGGyfv~S~ppv~ 223 (506)
T PF03141_consen 171 GSQRLPFPSNAFDMVHCSRCLIPWHPN--DGFLLFEVDRVLRPGGYFVLSGPPVY 223 (506)
T ss_pred ccccccCCccchhhhhcccccccchhc--ccceeehhhhhhccCceEEecCCccc
Confidence 23456777 899999983222111111 13467788999999999998877666
|
; GO: 0008168 methyltransferase activity |
| >KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.09 E-value=4.6e-06 Score=81.49 Aligned_cols=115 Identities=23% Similarity=0.303 Sum_probs=81.4
Q ss_pred hHhHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEccccc
Q 016351 60 RVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVED 138 (391)
Q Consensus 60 ~~r~~~~~~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~ 138 (391)
..-.+.+...|.+......++.+||+-||||.+++.+|+. +++|+|||++ +.+..|+++++.||+.| .+|+++-.++
T Consensus 365 t~~aevLys~i~e~~~l~~~k~llDv~CGTG~iglala~~-~~~ViGvEi~~~aV~dA~~nA~~NgisN-a~Fi~gqaE~ 442 (534)
T KOG2187|consen 365 TSAAEVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARG-VKRVIGVEISPDAVEDAEKNAQINGISN-ATFIVGQAED 442 (534)
T ss_pred cHHHHHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhcc-ccceeeeecChhhcchhhhcchhcCccc-eeeeecchhh
Confidence 3344556667777777777799999999999999999865 6689999999 89999999999999988 9999997666
Q ss_pred CCC----C--Cccc-EEEEccccccccCcchHHHHHHHHhccccCCeEEE
Q 016351 139 IVL----P--EKVD-VIISEWMGYFLLRESMFDSVICARDRWLKPTGVMY 181 (391)
Q Consensus 139 ~~~----~--~~~D-~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii 181 (391)
+-. + ..-+ ++|.++.-.. +-..++.+++.+-++.=.++
T Consensus 443 ~~~sl~~~~~~~~~~v~iiDPpR~G-----lh~~~ik~l~~~~~~~rlvy 487 (534)
T KOG2187|consen 443 LFPSLLTPCCDSETLVAIIDPPRKG-----LHMKVIKALRAYKNPRRLVY 487 (534)
T ss_pred ccchhcccCCCCCceEEEECCCccc-----ccHHHHHHHHhccCccceEE
Confidence 521 1 2335 4555553322 22345555554433443333
|
|
| >PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes | Back alignment and domain information |
|---|
Probab=98.08 E-value=6e-06 Score=72.07 Aligned_cols=94 Identities=31% Similarity=0.366 Sum_probs=59.0
Q ss_pred CCCEEEEECCcccHHHHHHHHcC--CCeEEEEechHHHHHHHHHHHHcCCCCcEEEEEcccccCC--------C---CCc
Q 016351 78 QGKTVLDVGTGSGILAIWSAQAG--ARKVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVEDIV--------L---PEK 144 (391)
Q Consensus 78 ~~~~VLDlGcGtG~l~~~~a~~g--~~~V~avD~s~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~--------~---~~~ 144 (391)
++.+||||||++|.++..+++.+ ..+|+|+|+.++ ... ..+.++++|+.+.. + .++
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~----------~~~-~~~~~i~~d~~~~~~~~~i~~~~~~~~~~ 91 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM----------DPL-QNVSFIQGDITNPENIKDIRKLLPESGEK 91 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST----------GS--TTEEBTTGGGEEEEHSHHGGGSHGTTTCS
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEecccc----------ccc-cceeeeecccchhhHHHhhhhhccccccC
Confidence 44899999999999999999997 568999999843 111 22777777765531 1 158
Q ss_pred ccEEEEccccccccC----c----chHHHHHHHHhccccCCeEEEc
Q 016351 145 VDVIISEWMGYFLLR----E----SMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 145 ~D~Ivse~~~~~~~~----e----~~l~~~l~~~~~~L~~gG~ii~ 182 (391)
+|+|+|+........ + ......+..+..+|+|||.++.
T Consensus 92 ~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~ 137 (181)
T PF01728_consen 92 FDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVI 137 (181)
T ss_dssp ESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEE
T ss_pred cceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEE
Confidence 999999873222111 1 1122233344577999998774
|
RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A .... |
| >PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e | Back alignment and domain information |
|---|
Probab=98.06 E-value=1.3e-05 Score=74.41 Aligned_cols=84 Identities=25% Similarity=0.355 Sum_probs=65.3
Q ss_pred HHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCC
Q 016351 65 AYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPE 143 (391)
Q Consensus 65 ~~~~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~ 143 (391)
...+.|.+.+...++..|||||+|+|.++..+++.+ ++|+++|++ .+++..++... ...+++++++|+..+..+.
T Consensus 17 ~~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~-~~v~~vE~d~~~~~~L~~~~~---~~~~~~vi~~D~l~~~~~~ 92 (262)
T PF00398_consen 17 NIADKIVDALDLSEGDTVLEIGPGPGALTRELLKRG-KRVIAVEIDPDLAKHLKERFA---SNPNVEVINGDFLKWDLYD 92 (262)
T ss_dssp HHHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHS-SEEEEEESSHHHHHHHHHHCT---TCSSEEEEES-TTTSCGGG
T ss_pred HHHHHHHHhcCCCCCCEEEEeCCCCccchhhHhccc-CcceeecCcHhHHHHHHHHhh---hcccceeeecchhccccHH
Confidence 344455555555578999999999999999999998 589999999 88888887665 2345999999999987654
Q ss_pred ----cccEEEEcc
Q 016351 144 ----KVDVIISEW 152 (391)
Q Consensus 144 ----~~D~Ivse~ 152 (391)
....|++++
T Consensus 93 ~~~~~~~~vv~Nl 105 (262)
T PF00398_consen 93 LLKNQPLLVVGNL 105 (262)
T ss_dssp HCSSSEEEEEEEE
T ss_pred hhcCCceEEEEEe
Confidence 566778765
|
g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A .... |
| >PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.06 E-value=1.9e-05 Score=74.35 Aligned_cols=86 Identities=19% Similarity=0.197 Sum_probs=65.8
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCCCeEEEEechHHHHHHHHHHHHcCCCCcEEEEEcccccCCC-CCcccEEEEccccc
Q 016351 77 FQGKTVLDVGTGSGILAIWSAQAGARKVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVEDIVL-PEKVDVIISEWMGY 155 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~-~~~~D~Ivse~~~~ 155 (391)
.++.++|||||++|.++..+++.|+ +|+|||..+|.... ..+ .+|+.+.+|...... .+++|+++|+...
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~rG~-~V~AVD~g~l~~~L----~~~---~~V~h~~~d~fr~~p~~~~vDwvVcDmve- 280 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRRGM-FVTAVDNGPMAQSL----MDT---GQVEHLRADGFKFRPPRKNVDWLVCDMVE- 280 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHcCC-EEEEEechhcCHhh----hCC---CCEEEEeccCcccCCCCCCCCEEEEeccc-
Confidence 5788999999999999999999999 89999976654332 222 348888888777654 5889999998752
Q ss_pred cccCcchHHHHHHHHhccccCC
Q 016351 156 FLLRESMFDSVICARDRWLKPT 177 (391)
Q Consensus 156 ~~~~e~~l~~~l~~~~~~L~~g 177 (391)
.+..+.+-+.++|..|
T Consensus 281 ------~P~rva~lm~~Wl~~g 296 (357)
T PRK11760 281 ------KPARVAELMAQWLVNG 296 (357)
T ss_pred ------CHHHHHHHHHHHHhcC
Confidence 2345666677788776
|
|
| >KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.05 E-value=2.1e-05 Score=70.28 Aligned_cols=86 Identities=26% Similarity=0.390 Sum_probs=62.0
Q ss_pred CCCEEEEECCcccHHHHHHHHcCCCeEEEEechHHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-CcccEEEEcccccc
Q 016351 78 QGKTVLDVGTGSGILAIWSAQAGARKVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIISEWMGYF 156 (391)
Q Consensus 78 ~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~-~~~D~Ivse~~~~~ 156 (391)
.+.+|.|+|||-+.++. .... +|+..|+-+ .+ -.++.+|+.+++++ +++|++|+-+ +
T Consensus 180 ~~~vIaD~GCGEakiA~---~~~~-kV~SfDL~a----------~~-----~~V~~cDm~~vPl~d~svDvaV~CL--S- 237 (325)
T KOG3045|consen 180 KNIVIADFGCGEAKIAS---SERH-KVHSFDLVA----------VN-----ERVIACDMRNVPLEDESVDVAVFCL--S- 237 (325)
T ss_pred CceEEEecccchhhhhh---cccc-ceeeeeeec----------CC-----CceeeccccCCcCccCcccEEEeeH--h-
Confidence 45789999999988765 2222 688888752 11 46788999999888 8999988622 1
Q ss_pred ccCcchHHHHHHHHhccccCCeEEEcccce
Q 016351 157 LLRESMFDSVICARDRWLKPTGVMYPSHAR 186 (391)
Q Consensus 157 ~~~e~~l~~~l~~~~~~L~~gG~ii~~~~~ 186 (391)
+-. ..+..++.+++|+|++||.+.+....
T Consensus 238 LMg-tn~~df~kEa~RiLk~gG~l~IAEv~ 266 (325)
T KOG3045|consen 238 LMG-TNLADFIKEANRILKPGGLLYIAEVK 266 (325)
T ss_pred hhc-ccHHHHHHHHHHHhccCceEEEEehh
Confidence 111 24678899999999999987655443
|
|
| >PF13679 Methyltransf_32: Methyltransferase domain | Back alignment and domain information |
|---|
Probab=98.03 E-value=2.5e-05 Score=65.32 Aligned_cols=74 Identities=20% Similarity=0.365 Sum_probs=59.2
Q ss_pred CCCCEEEEECCcccHHHHHHHH-----cCCCeEEEEech-HHHHHHHHHHHHcC--CCCcEEEEEcccccCCCCCcccEE
Q 016351 77 FQGKTVLDVGTGSGILAIWSAQ-----AGARKVYAVEAT-KMSDHARTLVKANN--LQDVVEVIEGSVEDIVLPEKVDVI 148 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~l~~~~a~-----~g~~~V~avD~s-~~~~~a~~~~~~~~--~~~~v~~i~~d~~~~~~~~~~D~I 148 (391)
.+...|+|+|||.|.|+..++. ....+|++||.+ ..++.+.++.+..+ +..++++..+++.+.......+++
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADESSSDPPDIL 103 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhcccCCCeEE
Confidence 4568999999999999999998 433489999999 88899988888877 555688888877665444667777
Q ss_pred EE
Q 016351 149 IS 150 (391)
Q Consensus 149 vs 150 (391)
+.
T Consensus 104 vg 105 (141)
T PF13679_consen 104 VG 105 (141)
T ss_pred EE
Confidence 76
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=97.99 E-value=3.7e-05 Score=77.82 Aligned_cols=105 Identities=18% Similarity=0.198 Sum_probs=77.9
Q ss_pred CCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC--CC-CcccEEEEcc
Q 016351 78 QGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV--LP-EKVDVIISEW 152 (391)
Q Consensus 78 ~~~~VLDlGcGtG~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~--~~-~~~D~Ivse~ 152 (391)
.+..+||||||.|.+...+|+. .-..++|||+. ..+..|.+.+...++.| +.++..|+..+. ++ +++|-|....
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N-~~~~~~~~~~~~~~~~~~sv~~i~i~F 425 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITN-FLLFPNNLDLILNDLPNNSLDGIYILF 425 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCe-EEEEcCCHHHHHHhcCcccccEEEEEC
Confidence 4578999999999998888887 44479999999 77777777778888876 888988876432 33 7799888743
Q ss_pred cccccc--Cc---chHHHHHHHHhccccCCeEEEcc
Q 016351 153 MGYFLL--RE---SMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 153 ~~~~~~--~e---~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
.+...- +. -.-+.++..+.+.|+|||.+.+.
T Consensus 426 PDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~ 461 (506)
T PRK01544 426 PDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFA 461 (506)
T ss_pred CCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEE
Confidence 332221 11 12367888999999999988743
|
|
| >COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.0001 Score=71.20 Aligned_cols=116 Identities=22% Similarity=0.158 Sum_probs=88.7
Q ss_pred cCCCCCCCEEEEECCcccHHHHHHHHcCC---CeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC---CC-Cc
Q 016351 73 NKHHFQGKTVLDVGTGSGILAIWSAQAGA---RKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV---LP-EK 144 (391)
Q Consensus 73 ~~~~~~~~~VLDlGcGtG~l~~~~a~~g~---~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~---~~-~~ 144 (391)
.+...++.+|||+.++.|.=+..+|+... ..|+|+|.+ .-+...++++++.|+.+ +.++..|...+. .. ++
T Consensus 151 ~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~n-v~~~~~d~~~~~~~~~~~~~ 229 (355)
T COG0144 151 VLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRN-VIVVNKDARRLAELLPGGEK 229 (355)
T ss_pred HcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCc-eEEEecccccccccccccCc
Confidence 45567889999999999998888887632 357999999 88999999999999988 788888876542 12 36
Q ss_pred ccEEEEccccccccCc-------------------chHHHHHHHHhccccCCeEEEcccceeEE
Q 016351 145 VDVIISEWMGYFLLRE-------------------SMFDSVICARDRWLKPTGVMYPSHARMWV 189 (391)
Q Consensus 145 ~D~Ivse~~~~~~~~e-------------------~~l~~~l~~~~~~L~~gG~ii~~~~~~~~ 189 (391)
||.|+.+...+...-- .....++....++|||||.++-+.+++..
T Consensus 230 fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~ 293 (355)
T COG0144 230 FDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLTP 293 (355)
T ss_pred CcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCch
Confidence 9999997654332100 12457888889999999999988777654
|
|
| >KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.96 E-value=3.9e-05 Score=72.00 Aligned_cols=97 Identities=19% Similarity=0.184 Sum_probs=76.9
Q ss_pred CEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEcccccccc
Q 016351 80 KTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMGYFLL 158 (391)
Q Consensus 80 ~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~~D~Ivse~~~~~~~ 158 (391)
...+|+|.|.|..+..+... +.+|-+++.. +.+..++.... .| |+.+.+|+..- .| +.|+|+.-|+.+.+.
T Consensus 179 ~~avDvGgGiG~v~k~ll~~-fp~ik~infdlp~v~~~a~~~~-~g----V~~v~gdmfq~-~P-~~daI~mkWiLhdwt 250 (342)
T KOG3178|consen 179 NVAVDVGGGIGRVLKNLLSK-YPHIKGINFDLPFVLAAAPYLA-PG----VEHVAGDMFQD-TP-KGDAIWMKWILHDWT 250 (342)
T ss_pred ceEEEcCCcHhHHHHHHHHh-CCCCceeecCHHHHHhhhhhhc-CC----cceeccccccc-CC-CcCeEEEEeecccCC
Confidence 78999999999999888874 5579999999 76665555543 33 88889998876 44 567999999888877
Q ss_pred CcchHHHHHHHHhccccCCeEEEcccc
Q 016351 159 RESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 159 ~e~~l~~~l~~~~~~L~~gG~ii~~~~ 185 (391)
.+ ++..+|+++++.|+|+|.+|....
T Consensus 251 De-dcvkiLknC~~sL~~~GkIiv~E~ 276 (342)
T KOG3178|consen 251 DE-DCVKILKNCKKSLPPGGKIIVVEN 276 (342)
T ss_pred hH-HHHHHHHHHHHhCCCCCEEEEEec
Confidence 76 467799999999999999875433
|
|
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.92 E-value=4.8e-05 Score=71.22 Aligned_cols=113 Identities=17% Similarity=0.174 Sum_probs=84.8
Q ss_pred CEEEEECCcccHHHHHHHHcC-CCeEEEEech-HHHHHHHHHH--H---HcCCC-CcEEEEEcccccCCC--CCcccEEE
Q 016351 80 KTVLDVGTGSGILAIWSAQAG-ARKVYAVEAT-KMSDHARTLV--K---ANNLQ-DVVEVIEGSVEDIVL--PEKVDVII 149 (391)
Q Consensus 80 ~~VLDlGcGtG~l~~~~a~~g-~~~V~avD~s-~~~~~a~~~~--~---~~~~~-~~v~~i~~d~~~~~~--~~~~D~Iv 149 (391)
.+||-+|.|.|.-...+.|.. ..+|+-||.+ .|++.++++. . .+.+. .+++++..|..++-- .+.||+||
T Consensus 291 ~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD~vI 370 (508)
T COG4262 291 RSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFDVVI 370 (508)
T ss_pred ceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccccEEE
Confidence 689999999999999999984 7799999999 9999988322 2 22332 479999999988632 27999999
Q ss_pred EccccccccCcch--HHHHHHHHhccccCCeEEEcccceeEEeec
Q 016351 150 SEWMGYFLLRESM--FDSVICARDRWLKPTGVMYPSHARMWVAPI 192 (391)
Q Consensus 150 se~~~~~~~~e~~--l~~~l~~~~~~L~~gG~ii~~~~~~~~~~~ 192 (391)
.+..+..-+.... -..+...+++.|+++|+++.+....|..|-
T Consensus 371 VDl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQags~y~tp~ 415 (508)
T COG4262 371 VDLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAGSPYFTPR 415 (508)
T ss_pred EeCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecCCCccCCc
Confidence 9775443322221 234566678999999999988887776544
|
|
| >TIGR01444 fkbM_fam methyltransferase, FkbM family | Back alignment and domain information |
|---|
Probab=97.90 E-value=3.7e-05 Score=64.13 Aligned_cols=57 Identities=33% Similarity=0.467 Sum_probs=50.1
Q ss_pred EEEEECCcccHHHHHHHHcCCC-eEEEEech-HHHHHHHHHHHHcCCCCcEEEEEccccc
Q 016351 81 TVLDVGTGSGILAIWSAQAGAR-KVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVED 138 (391)
Q Consensus 81 ~VLDlGcGtG~l~~~~a~~g~~-~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~ 138 (391)
++||+|||.|.++..+++.+.. +|+++|.+ .+.+.++++++.|++.+ +++++..+.+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~~-v~~~~~al~~ 59 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLPN-VVLLNAAVGD 59 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCCc-EEEEEeeeeC
Confidence 4899999999999999988654 89999999 89999999999998865 8888877665
|
Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548. |
| >PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D | Back alignment and domain information |
|---|
Probab=97.89 E-value=7.2e-06 Score=64.86 Aligned_cols=98 Identities=31% Similarity=0.459 Sum_probs=43.8
Q ss_pred EEECCcccHHHHHHHHc----CCCeEEEEechHHHHHHHHHHHHcCCCCcEEEEEcccccC--CCC-CcccEEEEccccc
Q 016351 83 LDVGTGSGILAIWSAQA----GARKVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVEDI--VLP-EKVDVIISEWMGY 155 (391)
Q Consensus 83 LDlGcGtG~l~~~~a~~----g~~~V~avD~s~~~~~a~~~~~~~~~~~~v~~i~~d~~~~--~~~-~~~D~Ivse~~~~ 155 (391)
||||+..|..+..+++. +..+++++|..+..+.+++.+++.++.++++++.++..+. .++ +++|+|+.+.-..
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg~H~ 80 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDGDHS 80 (106)
T ss_dssp --------------------------EEEESS------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES---
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECCCCC
Confidence 68999999888776654 2237999999943556666777677777899999999775 233 7999999876322
Q ss_pred cccCcchHHHHHHHHhccccCCeEEEccc
Q 016351 156 FLLRESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 156 ~~~~e~~l~~~l~~~~~~L~~gG~ii~~~ 184 (391)
. + .....+..+.+.|+|||++++..
T Consensus 81 ~---~-~~~~dl~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 81 Y---E-AVLRDLENALPRLAPGGVIVFDD 105 (106)
T ss_dssp H---H-HHHHHHHHHGGGEEEEEEEEEE-
T ss_pred H---H-HHHHHHHHHHHHcCCCeEEEEeC
Confidence 1 2 33445777888999999998764
|
|
| >PHA01634 hypothetical protein | Back alignment and domain information |
|---|
Probab=97.87 E-value=8.2e-05 Score=59.32 Aligned_cols=72 Identities=21% Similarity=0.215 Sum_probs=56.3
Q ss_pred CCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-CcccEEEEc
Q 016351 76 HFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIISE 151 (391)
Q Consensus 76 ~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~-~~~D~Ivse 151 (391)
..++++|+|||++.|-.++.++-.||++|+++|.+ .+.+..+++++.+.+-++..-.. +++-. +++|+.+.+
T Consensus 26 dvk~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k~nnI~DK~v~~~----eW~~~Y~~~Di~~iD 99 (156)
T PHA01634 26 NVYQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAYFNICDKAVMKG----EWNGEYEDVDIFVMD 99 (156)
T ss_pred eecCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhhhheeeeceeecc----cccccCCCcceEEEE
Confidence 35789999999999999999999999999999999 88899999988876544322221 23222 789988864
|
|
| >PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00018 Score=67.01 Aligned_cols=76 Identities=29% Similarity=0.365 Sum_probs=48.9
Q ss_pred CCEEEEECCccc-HHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHc-CCCCcEEEEEccccc-C----CC-CCcccEE
Q 016351 79 GKTVLDVGTGSG-ILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKAN-NLQDVVEVIEGSVED-I----VL-PEKVDVI 148 (391)
Q Consensus 79 ~~~VLDlGcGtG-~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~-~~~~~v~~i~~d~~~-~----~~-~~~~D~I 148 (391)
..++||||||.. +..+..++. |. +++|.|++ ..++.|+++++.| +++++|+++...-.. + .. .+.||+.
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~~W-~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~dft 181 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLYGW-SFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDFT 181 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEEE
T ss_pred ceEeecCCccHHHHHHHHhhhhcCC-eEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhcccceeeEE
Confidence 358999999985 556666654 66 89999999 8999999999999 999999998764322 1 11 2789999
Q ss_pred EEccccc
Q 016351 149 ISEWMGY 155 (391)
Q Consensus 149 vse~~~~ 155 (391)
+|++..|
T Consensus 182 mCNPPFy 188 (299)
T PF05971_consen 182 MCNPPFY 188 (299)
T ss_dssp EE-----
T ss_pred ecCCccc
Confidence 9988543
|
The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A. |
| >KOG2730 consensus Methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.85 E-value=1.8e-05 Score=69.16 Aligned_cols=98 Identities=21% Similarity=0.197 Sum_probs=71.0
Q ss_pred CCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC----CC-CcccEEEEc
Q 016351 78 QGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV----LP-EKVDVIISE 151 (391)
Q Consensus 78 ~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~----~~-~~~D~Ivse 151 (391)
...+|+|.-||.|..++..|..+. .|++||++ -.+..|+.+++-.|++++|+|++||+.++- +. ..+|+++..
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~~-~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~K~~~~~vf~s 172 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQGP-YVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKLKADKIKYDCVFLS 172 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhCC-eEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHHHHhhhhheeeeeecC
Confidence 446799999999999888888877 79999999 789999999999999999999999998862 22 345677643
Q ss_pred cccccccCcchHHHHHHHHhccccCCeE
Q 016351 152 WMGYFLLRESMFDSVICARDRWLKPTGV 179 (391)
Q Consensus 152 ~~~~~~~~e~~l~~~l~~~~~~L~~gG~ 179 (391)
+ -+.+.+-+..-+..+...+.|.|.
T Consensus 173 p---pwggp~y~~~~~~DL~~~~~p~~~ 197 (263)
T KOG2730|consen 173 P---PWGGPSYLRADVYDLETHLKPMGT 197 (263)
T ss_pred C---CCCCcchhhhhhhhhhhhcchhHH
Confidence 2 122222222223334555666643
|
|
| >PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2 | Back alignment and domain information |
|---|
Probab=97.85 E-value=8.8e-05 Score=70.56 Aligned_cols=114 Identities=20% Similarity=0.184 Sum_probs=71.2
Q ss_pred HHHHhcCCCCCCCEEEEECCcccHHHHHHHHc--------CCCeEEEEech-HHHHHHHHHHHHcCCCCc-EEEEEcccc
Q 016351 68 NSIFQNKHHFQGKTVLDVGTGSGILAIWSAQA--------GARKVYAVEAT-KMSDHARTLVKANNLQDV-VEVIEGSVE 137 (391)
Q Consensus 68 ~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~--------g~~~V~avD~s-~~~~~a~~~~~~~~~~~~-v~~i~~d~~ 137 (391)
+.+...+...++.+|||-.||+|.+...+.+. ...+++|+|++ .++..|+.++...+.... ..+..+|..
T Consensus 36 ~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l 115 (311)
T PF02384_consen 36 DLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSL 115 (311)
T ss_dssp HHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TT
T ss_pred HHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccccccccccccc
Confidence 34444445556778999999999998877762 34489999999 788888877766665443 468888876
Q ss_pred cCCC---CCcccEEEEccccccc--cCc----------------chHHHHHHHHhccccCCeEEE
Q 016351 138 DIVL---PEKVDVIISEWMGYFL--LRE----------------SMFDSVICARDRWLKPTGVMY 181 (391)
Q Consensus 138 ~~~~---~~~~D~Ivse~~~~~~--~~e----------------~~l~~~l~~~~~~L~~gG~ii 181 (391)
.... .++||+|++++.-... ... ..-..++..+.+.|+++|++.
T Consensus 116 ~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~ 180 (311)
T PF02384_consen 116 ENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAA 180 (311)
T ss_dssp TSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEE
T ss_pred cccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhccccccee
Confidence 5433 2689999998642221 000 011235666778999999754
|
1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B. |
| >PRK10742 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00014 Score=65.62 Aligned_cols=86 Identities=19% Similarity=0.145 Sum_probs=65.7
Q ss_pred HHhcCCCCCCC--EEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHc------C--CCCcEEEEEccccc
Q 016351 70 IFQNKHHFQGK--TVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKAN------N--LQDVVEVIEGSVED 138 (391)
Q Consensus 70 i~~~~~~~~~~--~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~------~--~~~~v~~i~~d~~~ 138 (391)
|.+++...++. +|||+=+|+|..++.++..|++ |+++|.+ .+....++.++.. + +..+++++++|..+
T Consensus 78 l~kAvglk~g~~p~VLD~TAGlG~Da~~las~G~~-V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~ 156 (250)
T PRK10742 78 VAKAVGIKGDYLPDVVDATAGLGRDAFVLASVGCR-VRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLT 156 (250)
T ss_pred HHHHhCCCCCCCCEEEECCCCccHHHHHHHHcCCE-EEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHH
Confidence 33344344555 8999999999999999999995 9999999 6777777777663 2 23569999999887
Q ss_pred CC--CCCcccEEEEcccccc
Q 016351 139 IV--LPEKVDVIISEWMGYF 156 (391)
Q Consensus 139 ~~--~~~~~D~Ivse~~~~~ 156 (391)
+- .+..||+|..++|...
T Consensus 157 ~L~~~~~~fDVVYlDPMfp~ 176 (250)
T PRK10742 157 ALTDITPRPQVVYLDPMFPH 176 (250)
T ss_pred HHhhCCCCCcEEEECCCCCC
Confidence 52 2357999999997443
|
|
| >PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins | Back alignment and domain information |
|---|
Probab=97.84 E-value=9.7e-05 Score=69.17 Aligned_cols=113 Identities=19% Similarity=0.174 Sum_probs=86.2
Q ss_pred CCCCCCEEEEECCcccHHHHHHHHc--CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC---CCCcccEE
Q 016351 75 HHFQGKTVLDVGTGSGILAIWSAQA--GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV---LPEKVDVI 148 (391)
Q Consensus 75 ~~~~~~~VLDlGcGtG~l~~~~a~~--g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~---~~~~~D~I 148 (391)
...++..|||+.++.|.=+..+++. +...|+|.|++ .-+...++++++.|..+ +.++..|..... ....||.|
T Consensus 82 ~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~-v~~~~~D~~~~~~~~~~~~fd~V 160 (283)
T PF01189_consen 82 DPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFN-VIVINADARKLDPKKPESKFDRV 160 (283)
T ss_dssp TTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SS-EEEEESHHHHHHHHHHTTTEEEE
T ss_pred cccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCce-EEEEeeccccccccccccccchh
Confidence 4567889999999999988888776 24589999999 88999999999999977 778878888762 22469999
Q ss_pred EEcccccccc--C----------cc-------hHHHHHHHHhccc----cCCeEEEcccceeE
Q 016351 149 ISEWMGYFLL--R----------ES-------MFDSVICARDRWL----KPTGVMYPSHARMW 188 (391)
Q Consensus 149 vse~~~~~~~--~----------e~-------~l~~~l~~~~~~L----~~gG~ii~~~~~~~ 188 (391)
+.+...+... . +. ....+|+.+.+++ +|||+++-+.+++.
T Consensus 161 lvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~~ 223 (283)
T PF01189_consen 161 LVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSLS 223 (283)
T ss_dssp EEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHHH
T ss_pred hcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccHH
Confidence 9976544321 0 00 2346788888999 99999997766654
|
In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A .... |
| >PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00022 Score=66.42 Aligned_cols=107 Identities=16% Similarity=0.188 Sum_probs=62.4
Q ss_pred HHHHhcCCCCCCCEEEEECCcccHHHHHHHHc--CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCc
Q 016351 68 NSIFQNKHHFQGKTVLDVGTGSGILAIWSAQA--GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEK 144 (391)
Q Consensus 68 ~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~--g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~ 144 (391)
..|....+.....+|||+|||+|.-...+... ...+++++|.| .|++.++..++................+...-.+
T Consensus 23 ~El~~r~p~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (274)
T PF09243_consen 23 SELRKRLPDFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFLPFPP 102 (274)
T ss_pred HHHHHhCcCCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhcccccCCC
Confidence 33444455667789999999999765555443 35589999999 9999999887654321111111111111111134
Q ss_pred ccEEEEc-cccccccCcchHHHHHHHHhccccC
Q 016351 145 VDVIISE-WMGYFLLRESMFDSVICARDRWLKP 176 (391)
Q Consensus 145 ~D~Ivse-~~~~~~~~e~~l~~~l~~~~~~L~~ 176 (391)
.|+|++. .++... . .....+++.+-+.+++
T Consensus 103 ~DLvi~s~~L~EL~-~-~~r~~lv~~LW~~~~~ 133 (274)
T PF09243_consen 103 DDLVIASYVLNELP-S-AARAELVRSLWNKTAP 133 (274)
T ss_pred CcEEEEehhhhcCC-c-hHHHHHHHHHHHhccC
Confidence 5999973 333322 2 3455666666555555
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation |
| >COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.80 E-value=6.3e-05 Score=65.94 Aligned_cols=94 Identities=26% Similarity=0.322 Sum_probs=65.4
Q ss_pred CCCEEEEECCcccHHHHHHHHc-CC-CeEEEEechHHHHHHHHHHHHcCCCCcEEEEEcccccCC--------CC-Cccc
Q 016351 78 QGKTVLDVGTGSGILAIWSAQA-GA-RKVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVEDIV--------LP-EKVD 146 (391)
Q Consensus 78 ~~~~VLDlGcGtG~l~~~~a~~-g~-~~V~avD~s~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~--------~~-~~~D 146 (391)
++.+|+|||+-.|.++..+++. +. .+|+|||+.+|-. ..+ |.++++|+++-+ ++ .++|
T Consensus 45 ~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~----------~~~-V~~iq~d~~~~~~~~~l~~~l~~~~~D 113 (205)
T COG0293 45 PGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKP----------IPG-VIFLQGDITDEDTLEKLLEALGGAPVD 113 (205)
T ss_pred CCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccccc----------CCC-ceEEeeeccCccHHHHHHHHcCCCCcc
Confidence 5689999999999999999987 33 2499999986421 123 999999998753 23 4579
Q ss_pred EEEEccccccccCc--------chHHHHHHHHhccccCCeEEEc
Q 016351 147 VIISEWMGYFLLRE--------SMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 147 ~Ivse~~~~~~~~e--------~~l~~~l~~~~~~L~~gG~ii~ 182 (391)
+|+|++........ ......++-+...|+|+|.++.
T Consensus 114 vV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~ 157 (205)
T COG0293 114 VVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVA 157 (205)
T ss_pred eEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEE
Confidence 99998753221111 1123344555789999998873
|
|
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00033 Score=64.69 Aligned_cols=103 Identities=18% Similarity=0.236 Sum_probs=64.2
Q ss_pred CCEEEEECCcccHH-HHHHHHc-CC-CeEEEEech-HHHHHHHHHHH-HcCCCCcEEEEEcccccCCCC-CcccEEEEcc
Q 016351 79 GKTVLDVGTGSGIL-AIWSAQA-GA-RKVYAVEAT-KMSDHARTLVK-ANNLQDVVEVIEGSVEDIVLP-EKVDVIISEW 152 (391)
Q Consensus 79 ~~~VLDlGcGtG~l-~~~~a~~-g~-~~V~avD~s-~~~~~a~~~~~-~~~~~~~v~~i~~d~~~~~~~-~~~D~Ivse~ 152 (391)
.++|+=||||.=.+ ++.+++. +. ..|.++|++ ..++.|++.++ ..++.++++|+.+|..+.... ..||+|+...
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lAa 200 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLAA 200 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-T
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEhh
Confidence 36999999998555 4556654 32 379999999 89999999888 678888899999999887544 7899998633
Q ss_pred ccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 153 MGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 153 ~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
+.. .....-..++..+.+.++||+.++..
T Consensus 201 lVg--~~~e~K~~Il~~l~~~m~~ga~l~~R 229 (276)
T PF03059_consen 201 LVG--MDAEPKEEILEHLAKHMAPGARLVVR 229 (276)
T ss_dssp T-S------SHHHHHHHHHHHS-TTSEEEEE
T ss_pred hcc--cccchHHHHHHHHHhhCCCCcEEEEe
Confidence 221 11224578899999999999988855
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00051 Score=57.03 Aligned_cols=99 Identities=27% Similarity=0.323 Sum_probs=65.4
Q ss_pred EEEECCcccHHHHHHHHcCC--CeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEccccc--CCCCC--cccEEEEcccc
Q 016351 82 VLDVGTGSGILAIWSAQAGA--RKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVED--IVLPE--KVDVIISEWMG 154 (391)
Q Consensus 82 VLDlGcGtG~l~~~~a~~g~--~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~--~~~~~--~~D~Ivse~~~ 154 (391)
++|+|||+|... .+++... ..++++|.+ .++..++......+... +.++..+... +++.. .+|++.+....
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 129 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGL-VDFVVADALGGVLPFEDSASFDLVISLLVL 129 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCc-eEEEEeccccCCCCCCCCCceeEEeeeeeh
Confidence 999999999976 4444422 279999999 77777544443221111 6788888776 55553 79999432221
Q ss_pred ccccCcchHHHHHHHHhccccCCeEEEcccce
Q 016351 155 YFLLRESMFDSVICARDRWLKPTGVMYPSHAR 186 (391)
Q Consensus 155 ~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~~~ 186 (391)
+.. . ....+..+.+.|+|+|.++.....
T Consensus 130 ~~~---~-~~~~~~~~~~~l~~~g~~~~~~~~ 157 (257)
T COG0500 130 HLL---P-PAKALRELLRVLKPGGRLVLSDLL 157 (257)
T ss_pred hcC---C-HHHHHHHHHHhcCCCcEEEEEecc
Confidence 111 1 567788899999999988865443
|
|
| >PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ] | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00074 Score=59.78 Aligned_cols=114 Identities=24% Similarity=0.218 Sum_probs=73.4
Q ss_pred hHHHHHHHHHhc---CCCCCCCEEEEECCcccHHHHHHHHc-C-CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcc
Q 016351 62 RMDAYFNSIFQN---KHHFQGKTVLDVGTGSGILAIWSAQA-G-ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGS 135 (391)
Q Consensus 62 r~~~~~~~i~~~---~~~~~~~~VLDlGcGtG~l~~~~a~~-g-~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d 135 (391)
+...+..+|..- ++..++.+||-||+.+|.-.-.++.- | ...|+|||.| ......-..+++. .+|-.+.+|
T Consensus 54 ~RSKLaAai~~Gl~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R---~NIiPIl~D 130 (229)
T PF01269_consen 54 FRSKLAAAILKGLENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR---PNIIPILED 130 (229)
T ss_dssp TT-HHHHHHHTT-S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS---TTEEEEES-
T ss_pred hhhHHHHHHHcCccccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC---Cceeeeecc
Confidence 345556666543 34567899999999999988888875 5 4579999999 5443333444432 337778888
Q ss_pred cccCC----CCCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 136 VEDIV----LPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 136 ~~~~~----~~~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
++... +-+.+|+|+++..- ......+...+..+||+||.+++.
T Consensus 131 Ar~P~~Y~~lv~~VDvI~~DVaQ-----p~Qa~I~~~Na~~fLk~gG~~~i~ 177 (229)
T PF01269_consen 131 ARHPEKYRMLVEMVDVIFQDVAQ-----PDQARIAALNARHFLKPGGHLIIS 177 (229)
T ss_dssp TTSGGGGTTTS--EEEEEEE-SS-----TTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCChHHhhcccccccEEEecCCC-----hHHHHHHHHHHHhhccCCcEEEEE
Confidence 87742 23789999997631 124566677788999999998854
|
It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A .... |
| >PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=97.60 E-value=6.8e-05 Score=68.50 Aligned_cols=108 Identities=20% Similarity=0.288 Sum_probs=64.4
Q ss_pred CCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcC----------------CC-----------C
Q 016351 76 HFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANN----------------LQ-----------D 127 (391)
Q Consensus 76 ~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~----------------~~-----------~ 127 (391)
..++.++||||||.-+.....|..-+++|+..|.. ...+..++-++..+ -. .
T Consensus 54 ~~~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~ 133 (256)
T PF01234_consen 54 GVKGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRR 133 (256)
T ss_dssp SS-EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHH
T ss_pred CcCCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHH
Confidence 34678999999999776555555556689999988 66655554443221 00 1
Q ss_pred cE-EEEEcccccCC-------CCCcccEEEEccccc-cccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 128 VV-EVIEGSVEDIV-------LPEKVDVIISEWMGY-FLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 128 ~v-~~i~~d~~~~~-------~~~~~D~Ivse~~~~-~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
.| .++..|+.... +|+++|+|++-.... .-.........++.+.++|||||.+|..
T Consensus 134 ~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~ 198 (256)
T PF01234_consen 134 AVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILA 198 (256)
T ss_dssp HEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred hhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 13 37778887742 234699999843222 1122234567788889999999998853
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A .... |
| >KOG4058 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00038 Score=57.05 Aligned_cols=106 Identities=13% Similarity=0.104 Sum_probs=78.5
Q ss_pred HhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEE
Q 016351 71 FQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVII 149 (391)
Q Consensus 71 ~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~~D~Iv 149 (391)
...+...+..+.+|||+|.|.+.+.+++.|....+|+|++ =.+.+++-.+-+.|+.....|...|+..+++. .|..++
T Consensus 65 LSll~~n~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~dl~-dy~~vv 143 (199)
T KOG4058|consen 65 LSLLRGNPKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVDLR-DYRNVV 143 (199)
T ss_pred HHHccCCCCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhcccc-ccceEE
Confidence 4444445556799999999999999999997789999999 57788888888889988899999998887663 444444
Q ss_pred EccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 150 SEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 150 se~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
. +..|..++.+-+++..-|..+..++-+
T Consensus 144 i------Fgaes~m~dLe~KL~~E~p~nt~vvac 171 (199)
T KOG4058|consen 144 I------FGAESVMPDLEDKLRTELPANTRVVAC 171 (199)
T ss_pred E------eehHHHHhhhHHHHHhhCcCCCeEEEE
Confidence 3 122344555666666566777776643
|
|
| >TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00032 Score=71.66 Aligned_cols=75 Identities=17% Similarity=0.202 Sum_probs=54.1
Q ss_pred CCCEEEEECCcccHHHHHHHHcCC---------CeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC------C
Q 016351 78 QGKTVLDVGTGSGILAIWSAQAGA---------RKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV------L 141 (391)
Q Consensus 78 ~~~~VLDlGcGtG~l~~~~a~~g~---------~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~------~ 141 (391)
...+|||.+||+|.+...+++... .+++|+|++ .++..++.++...+. ..+.+...|..... .
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~-~~~~i~~~d~l~~~~~~~~~~ 109 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFAL-LEINVINFNSLSYVLLNIESY 109 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCC-CCceeeecccccccccccccc
Confidence 346899999999999888776421 368999999 888999888876652 12556666544321 1
Q ss_pred CCcccEEEEccc
Q 016351 142 PEKVDVIISEWM 153 (391)
Q Consensus 142 ~~~~D~Ivse~~ 153 (391)
.++||+||+++.
T Consensus 110 ~~~fD~IIgNPP 121 (524)
T TIGR02987 110 LDLFDIVITNPP 121 (524)
T ss_pred cCcccEEEeCCC
Confidence 258999999874
|
Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted. |
| >TIGR03439 methyl_EasF probable methyltransferase domain, EasF family | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.002 Score=61.07 Aligned_cols=112 Identities=13% Similarity=0.119 Sum_probs=71.8
Q ss_pred HHHHhcCCCCCCCEEEEECCcccHHHHHHHHc----C-CCeEEEEech-HHHHHHHHHHHHcCCCC-cEEEEEcccccC-
Q 016351 68 NSIFQNKHHFQGKTVLDVGTGSGILAIWSAQA----G-ARKVYAVEAT-KMSDHARTLVKANNLQD-VVEVIEGSVEDI- 139 (391)
Q Consensus 68 ~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~----g-~~~V~avD~s-~~~~~a~~~~~~~~~~~-~v~~i~~d~~~~- 139 (391)
..|...+ .++..++|+|||+|.-+..+.++ + ..+.++||+| ++++.+.+.+....++. .|.-+.+|..+.
T Consensus 68 ~~Ia~~i--~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l 145 (319)
T TIGR03439 68 SDIAASI--PSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGL 145 (319)
T ss_pred HHHHHhc--CCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHH
Confidence 3455443 24568999999999765443332 1 2369999999 89999988887444443 244488888663
Q ss_pred ---CC---CCcccEEEE--ccccccccCcchHHHHHHHHhc-cccCCeEEEcc
Q 016351 140 ---VL---PEKVDVIIS--EWMGYFLLRESMFDSVICARDR-WLKPTGVMYPS 183 (391)
Q Consensus 140 ---~~---~~~~D~Ivs--e~~~~~~~~e~~l~~~l~~~~~-~L~~gG~ii~~ 183 (391)
.. +....+++. ..++.+-.. ....+++.+++ .|+||+.+++.
T Consensus 146 ~~l~~~~~~~~~r~~~flGSsiGNf~~~--ea~~fL~~~~~~~l~~~d~lLiG 196 (319)
T TIGR03439 146 AWLKRPENRSRPTTILWLGSSIGNFSRP--EAAAFLAGFLATALSPSDSFLIG 196 (319)
T ss_pred hhcccccccCCccEEEEeCccccCCCHH--HHHHHHHHHHHhhCCCCCEEEEe
Confidence 11 234567765 223333222 24567888888 99999988764
|
This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781). |
| >KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00034 Score=67.33 Aligned_cols=106 Identities=22% Similarity=0.234 Sum_probs=83.8
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-CcccEEEEcccc
Q 016351 77 FQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIISEWMG 154 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~-~~~D~Ivse~~~ 154 (391)
.++..++|+|||-|..+...+..+...+++++.+ -.+..+.......++.++..++.+|+...+++ ..||.+-+ .
T Consensus 109 ~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~---l 185 (364)
T KOG1269|consen 109 FPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRF---L 185 (364)
T ss_pred cccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEE---E
Confidence 3556899999999999999998876689999999 66777777777777777778888888887766 78999886 2
Q ss_pred ccccCcchHHHHHHHHhccccCCeEEEcccc
Q 016351 155 YFLLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 155 ~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~~ 185 (391)
....+...+..++.++.|.++|||.++....
T Consensus 186 d~~~~~~~~~~~y~Ei~rv~kpGG~~i~~e~ 216 (364)
T KOG1269|consen 186 EVVCHAPDLEKVYAEIYRVLKPGGLFIVKEW 216 (364)
T ss_pred eecccCCcHHHHHHHHhcccCCCceEEeHHH
Confidence 2233344677889999999999999885543
|
|
| >COG2384 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0033 Score=55.49 Aligned_cols=92 Identities=27% Similarity=0.342 Sum_probs=72.2
Q ss_pred CCEEEEECCcccHHHHHHHHcC-CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccC-CCCCcccEEEEccccc
Q 016351 79 GKTVLDVGTGSGILAIWSAQAG-ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDI-VLPEKVDVIISEWMGY 155 (391)
Q Consensus 79 ~~~VLDlGcGtG~l~~~~a~~g-~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~-~~~~~~D~Ivse~~~~ 155 (391)
+.++.||||-.+.|...+.+.+ +..+++.|++ .-++.|.++++++++.+++++..+|.... .....+|+|+.-.||.
T Consensus 17 ~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~~d~~d~ivIAGMGG 96 (226)
T COG2384 17 GARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLELEDEIDVIVIAGMGG 96 (226)
T ss_pred CCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCccCCcCEEEEeCCcH
Confidence 3459999999999999999875 5689999999 88999999999999999999999998553 3335899999866654
Q ss_pred cccCcchHHHHHHHHhcccc
Q 016351 156 FLLRESMFDSVICARDRWLK 175 (391)
Q Consensus 156 ~~~~e~~l~~~l~~~~~~L~ 175 (391)
.+ +..++++....|+
T Consensus 97 ~l-----I~~ILee~~~~l~ 111 (226)
T COG2384 97 TL-----IREILEEGKEKLK 111 (226)
T ss_pred HH-----HHHHHHHhhhhhc
Confidence 42 3445555544444
|
|
| >PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.001 Score=54.87 Aligned_cols=81 Identities=28% Similarity=0.350 Sum_probs=58.1
Q ss_pred eEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC--CC-cccEEEEccccccccCcch-------HHHHHHHHh
Q 016351 103 KVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL--PE-KVDVIISEWMGYFLLRESM-------FDSVICARD 171 (391)
Q Consensus 103 ~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~--~~-~~D~Ivse~~~~~~~~e~~-------l~~~l~~~~ 171 (391)
+|+|+|+. .+++.++++.+..++.++|++++..=+++.. ++ ++|+++-++ ||....... --..++++.
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNL-GYLPggDk~i~T~~~TTl~Al~~al 79 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNL-GYLPGGDKSITTKPETTLKALEAAL 79 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEE-SB-CTS-TTSB--HHHHHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEEC-CcCCCCCCCCCcCcHHHHHHHHHHH
Confidence 69999999 8999999999999998899999987666542 34 899999875 776554421 223466677
Q ss_pred ccccCCeEEEccc
Q 016351 172 RWLKPTGVMYPSH 184 (391)
Q Consensus 172 ~~L~~gG~ii~~~ 184 (391)
++|+|||++++..
T Consensus 80 ~lL~~gG~i~iv~ 92 (140)
T PF06962_consen 80 ELLKPGGIITIVV 92 (140)
T ss_dssp HHEEEEEEEEEEE
T ss_pred HhhccCCEEEEEE
Confidence 8999999988653
|
; PDB: 3EEY_H 3LBY_A 3MTI_A. |
| >KOG3201 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.00011 Score=61.08 Aligned_cols=112 Identities=15% Similarity=0.271 Sum_probs=72.5
Q ss_pred HHHHHhcCCCCCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCC--cEEEEEcccccC--
Q 016351 67 FNSIFQNKHHFQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQD--VVEVIEGSVEDI-- 139 (391)
Q Consensus 67 ~~~i~~~~~~~~~~~VLDlGcGt-G~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~--~v~~i~~d~~~~-- 139 (391)
.-.+.+......++.||++|.|- |+-++++|.. ....|...|-+ ..++-.+++...|-... ++.++.-+...-
T Consensus 18 a~~~l~~~n~~rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqs 97 (201)
T KOG3201|consen 18 AWTILRDPNKIRGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQS 97 (201)
T ss_pred HHHHHhchhHHhHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHH
Confidence 33344444445568899999995 6777777764 55679999999 78888888777763321 232222222211
Q ss_pred -CCCCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEE
Q 016351 140 -VLPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMY 181 (391)
Q Consensus 140 -~~~~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii 181 (391)
.....||+|+|. .++...+....+.+.+.++|+|.|..+
T Consensus 98 q~eq~tFDiIlaA---DClFfdE~h~sLvdtIk~lL~p~g~Al 137 (201)
T KOG3201|consen 98 QQEQHTFDIILAA---DCLFFDEHHESLVDTIKSLLRPSGRAL 137 (201)
T ss_pred HHhhCcccEEEec---cchhHHHHHHHHHHHHHHHhCccccee
Confidence 112589999982 223333356788899999999999854
|
|
| >PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2 | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0008 Score=65.39 Aligned_cols=98 Identities=23% Similarity=0.256 Sum_probs=76.3
Q ss_pred CCEEEEECCcccHHHHHHHHc--CCCeEEEEech-HHHHHHHHHHHHcCCCC-cEEEEEcccccCC--CCCcccEEEEcc
Q 016351 79 GKTVLDVGTGSGILAIWSAQA--GARKVYAVEAT-KMSDHARTLVKANNLQD-VVEVIEGSVEDIV--LPEKVDVIISEW 152 (391)
Q Consensus 79 ~~~VLDlGcGtG~l~~~~a~~--g~~~V~avD~s-~~~~~a~~~~~~~~~~~-~v~~i~~d~~~~~--~~~~~D~Ivse~ 152 (391)
+.+|||.=+|||+-++..++. +..+|++-|+| ++++.++++++.|++++ ++++.+.|+..+- ..+.||+|=.|+
T Consensus 50 ~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~~~~~fD~IDlDP 129 (377)
T PF02005_consen 50 PIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLYSRQERFDVIDLDP 129 (377)
T ss_dssp -EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHCHSTT-EEEEEE--
T ss_pred CceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhhhccccCCEEEeCC
Confidence 468999999999999888876 66799999999 89999999999999998 7999999998865 458999999877
Q ss_pred ccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 153 MGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 153 ~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
+|. ...+++.+.+.++.||++...
T Consensus 130 fGS-------p~pfldsA~~~v~~gGll~vT 153 (377)
T PF02005_consen 130 FGS-------PAPFLDSALQAVKDGGLLCVT 153 (377)
T ss_dssp SS---------HHHHHHHHHHEEEEEEEEEE
T ss_pred CCC-------ccHhHHHHHHHhhcCCEEEEe
Confidence 653 346788888899999988754
|
1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: |
| >KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0024 Score=55.88 Aligned_cols=102 Identities=28% Similarity=0.377 Sum_probs=76.0
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCC--CcEEEEEcccccC--CCC-CcccEEEE
Q 016351 77 FQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQ--DVVEVIEGSVEDI--VLP-EKVDVIIS 150 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~--~~v~~i~~d~~~~--~~~-~~~D~Ivs 150 (391)
.++.+||.||-|-|+..-.+.++...+-+.||.+ .+++.+++ +|+. ++|.++.+.-++. .++ +.||-|.-
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~----~gw~ek~nViil~g~WeDvl~~L~d~~FDGI~y 175 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRD----WGWREKENVIILEGRWEDVLNTLPDKHFDGIYY 175 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHh----cccccccceEEEecchHhhhccccccCcceeEe
Confidence 5789999999999999999998877678889999 77766554 4443 4577777766664 233 78999997
Q ss_pred ccccccccCcchHHHHHHHHhccccCCeEEEcccc
Q 016351 151 EWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 151 e~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~~ 185 (391)
+..+ -..| ++..+.+.+.++|||+|++-....
T Consensus 176 DTy~--e~yE-dl~~~hqh~~rLLkP~gv~SyfNg 207 (271)
T KOG1709|consen 176 DTYS--ELYE-DLRHFHQHVVRLLKPEGVFSYFNG 207 (271)
T ss_pred echh--hHHH-HHHHHHHHHhhhcCCCceEEEecC
Confidence 5532 2233 567778889999999998865443
|
|
| >PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.011 Score=53.14 Aligned_cols=98 Identities=16% Similarity=0.225 Sum_probs=59.4
Q ss_pred CCCCCCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC---CCcccEE
Q 016351 74 KHHFQGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL---PEKVDVI 148 (391)
Q Consensus 74 ~~~~~~~~VLDlGcGtG~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~---~~~~D~I 148 (391)
...+.+++||-||-.. +.|++++-. ..++|+.+|++ .+++..++.+++.|++ |+.++.|+++--+ .++||++
T Consensus 40 ~gdL~gk~il~lGDDD-LtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~--i~~~~~DlR~~LP~~~~~~fD~f 116 (243)
T PF01861_consen 40 RGDLEGKRILFLGDDD-LTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLP--IEAVHYDLRDPLPEELRGKFDVF 116 (243)
T ss_dssp TT-STT-EEEEES-TT--HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT----EEEE---TTS---TTTSS-BSEE
T ss_pred cCcccCCEEEEEcCCc-HHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCc--eEEEEecccccCCHHHhcCCCEE
Confidence 3456889999999776 445554443 45689999999 9999999999999998 9999999988422 2899999
Q ss_pred EEccccccccCcchHHHHHHHHhccccCCe
Q 016351 149 ISEWMGYFLLRESMFDSVICARDRWLKPTG 178 (391)
Q Consensus 149 vse~~~~~~~~e~~l~~~l~~~~~~L~~gG 178 (391)
++++.-. + .-+..++......||..|
T Consensus 117 ~TDPPyT-~---~G~~LFlsRgi~~Lk~~g 142 (243)
T PF01861_consen 117 FTDPPYT-P---EGLKLFLSRGIEALKGEG 142 (243)
T ss_dssp EE---SS-H---HHHHHHHHHHHHTB-STT
T ss_pred EeCCCCC-H---HHHHHHHHHHHHHhCCCC
Confidence 9998532 2 235566777677777766
|
All the members are 350-400 amino acids long.; PDB: 2QM3_A. |
| >KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0039 Score=59.90 Aligned_cols=115 Identities=12% Similarity=0.130 Sum_probs=85.7
Q ss_pred CCCCCCCEEEEECCcccHHHHHHHHc--CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC---CCCcccE
Q 016351 74 KHHFQGKTVLDVGTGSGILAIWSAQA--GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV---LPEKVDV 147 (391)
Q Consensus 74 ~~~~~~~~VLDlGcGtG~l~~~~a~~--g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~---~~~~~D~ 147 (391)
+...++.+|||+.+-.|.=+.++|.. +-..|+|.|.+ .-+.....++.+.|+.+ ..++..|..+++ ++++||-
T Consensus 237 L~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~n-tiv~n~D~~ef~~~~~~~~fDR 315 (460)
T KOG1122|consen 237 LDPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTN-TIVSNYDGREFPEKEFPGSFDR 315 (460)
T ss_pred cCCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCc-eEEEccCcccccccccCcccce
Confidence 34567899999999999766665554 44579999999 88999999999999877 567777877653 3458999
Q ss_pred EEEcccccc--ccCc-----------------chHHHHHHHHhccccCCeEEEcccceeEE
Q 016351 148 IISEWMGYF--LLRE-----------------SMFDSVICARDRWLKPTGVMYPSHARMWV 189 (391)
Q Consensus 148 Ivse~~~~~--~~~e-----------------~~l~~~l~~~~~~L~~gG~ii~~~~~~~~ 189 (391)
|+.+...+. +... .....++.....++++||+++-+.+++..
T Consensus 316 VLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI~~ 376 (460)
T KOG1122|consen 316 VLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSITV 376 (460)
T ss_pred eeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeecch
Confidence 998765443 1111 12346677778999999999988777664
|
|
| >PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) [] | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0034 Score=55.25 Aligned_cols=120 Identities=18% Similarity=0.284 Sum_probs=63.4
Q ss_pred hcCChHhHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHH----c-CCCeEEEEech-HHHHHHHHHHHHcCCCCcE
Q 016351 56 MLSDRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQ----A-GARKVYAVEAT-KMSDHARTLVKANNLQDVV 129 (391)
Q Consensus 56 ml~d~~r~~~~~~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~----~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v 129 (391)
+++.....-.|++.|-+. +++.|+++|.-.|.-+++.|. . +..+|++||++ .. ..++..+...+.++|
T Consensus 14 i~q~P~Dm~~~qeli~~~----kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~--~~~~a~e~hp~~~rI 87 (206)
T PF04989_consen 14 IIQYPQDMVAYQELIWEL----KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRP--HNRKAIESHPMSPRI 87 (206)
T ss_dssp ESS-HHHHHHHHHHHHHH------SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT----S-GGGG----TTE
T ss_pred hhcCHHHHHHHHHHHHHh----CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcch--hchHHHhhccccCce
Confidence 355566666777766654 568999999999876665553 2 34589999997 42 223334455666789
Q ss_pred EEEEcccccCC-------C--CCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcccc
Q 016351 130 EVIEGSVEDIV-------L--PEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 130 ~~i~~d~~~~~-------~--~~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~~ 185 (391)
++++||..+.. . +....+|+-+. .+ .++..+ ..|.....++++|+++|....
T Consensus 88 ~~i~Gds~d~~~~~~v~~~~~~~~~vlVilDs-~H--~~~hvl-~eL~~y~plv~~G~Y~IVeDt 148 (206)
T PF04989_consen 88 TFIQGDSIDPEIVDQVRELASPPHPVLVILDS-SH--THEHVL-AELEAYAPLVSPGSYLIVEDT 148 (206)
T ss_dssp EEEES-SSSTHHHHTSGSS----SSEEEEESS-------SSHH-HHHHHHHHT--TT-EEEETSH
T ss_pred EEEECCCCCHHHHHHHHHhhccCCceEEEECC-Cc--cHHHHH-HHHHHhCccCCCCCEEEEEec
Confidence 99999987752 1 12344666444 22 223334 346668899999999886544
|
Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E. |
| >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0038 Score=61.28 Aligned_cols=98 Identities=16% Similarity=0.311 Sum_probs=73.1
Q ss_pred EEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHH-HHHHHcCCCCcEEEEEcccccCCCC-CcccEEEEcc-cccc
Q 016351 81 TVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHAR-TLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIISEW-MGYF 156 (391)
Q Consensus 81 ~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~-~~~~~~~~~~~v~~i~~d~~~~~~~-~~~D~Ivse~-~~~~ 156 (391)
++|-+|||.-.++..+-+.|...|+-+|.| ..+..+. .+++.. ....+...|+..+.++ ++||+|+-.. ++..
T Consensus 51 ~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~~~---~~~~~~~~d~~~l~fedESFdiVIdkGtlDal 127 (482)
T KOG2352|consen 51 KILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAKER---PEMQMVEMDMDQLVFEDESFDIVIDKGTLDAL 127 (482)
T ss_pred eeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccccCC---cceEEEEecchhccCCCcceeEEEecCccccc
Confidence 899999999999999999999999999999 4443332 222222 2389999999999888 8999999844 3333
Q ss_pred ccCcch------HHHHHHHHhccccCCeEEE
Q 016351 157 LLRESM------FDSVICARDRWLKPTGVMY 181 (391)
Q Consensus 157 ~~~e~~------l~~~l~~~~~~L~~gG~ii 181 (391)
+..+.. ....+..+.++|+++|+.+
T Consensus 128 ~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~ 158 (482)
T KOG2352|consen 128 FEDEDALLNTAHVSNMLDEVSRVLAPGGKYI 158 (482)
T ss_pred cCCchhhhhhHHhhHHHhhHHHHhccCCEEE
Confidence 333322 2456677899999999866
|
|
| >COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0052 Score=53.38 Aligned_cols=115 Identities=21% Similarity=0.219 Sum_probs=78.4
Q ss_pred HhHHHHHHHHHhc---CCCCCCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcc
Q 016351 61 VRMDAYFNSIFQN---KHHFQGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGS 135 (391)
Q Consensus 61 ~r~~~~~~~i~~~---~~~~~~~~VLDlGcGtG~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d 135 (391)
.+...+..+|..- ++..++.+||=||+-+|.-.-.++.- |...|+|||.| .+.......+++. +++-.+.+|
T Consensus 56 p~RSKLaAaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R---~Ni~PIL~D 132 (231)
T COG1889 56 PRRSKLAAAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKR---PNIIPILED 132 (231)
T ss_pred cchhHHHHHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhC---CCceeeecc
Confidence 3445566666644 34567899999999999887777775 65679999999 5443333333331 337777788
Q ss_pred cccCC----CCCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 136 VEDIV----LPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 136 ~~~~~----~~~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
++... +-+.+|+|+.+..- .+...-+...+..+|+++|.++..
T Consensus 133 A~~P~~Y~~~Ve~VDviy~DVAQ-----p~Qa~I~~~Na~~FLk~~G~~~i~ 179 (231)
T COG1889 133 ARKPEKYRHLVEKVDVIYQDVAQ-----PNQAEILADNAEFFLKKGGYVVIA 179 (231)
T ss_pred cCCcHHhhhhcccccEEEEecCC-----chHHHHHHHHHHHhcccCCeEEEE
Confidence 87642 22789999987531 123556677889999999977644
|
|
| >KOG1331 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.00041 Score=63.31 Aligned_cols=95 Identities=18% Similarity=0.123 Sum_probs=72.0
Q ss_pred CCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-CcccEEEEccccc
Q 016351 78 QGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIISEWMGY 155 (391)
Q Consensus 78 ~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~-~~~D~Ivse~~~~ 155 (391)
.+..+||+|||.|-... ......+++.|.+ ..+..+++. +...+..+|+..++.+ ..||.+++..+-+
T Consensus 45 ~gsv~~d~gCGngky~~---~~p~~~~ig~D~c~~l~~~ak~~-------~~~~~~~ad~l~~p~~~~s~d~~lsiavih 114 (293)
T KOG1331|consen 45 TGSVGLDVGCGNGKYLG---VNPLCLIIGCDLCTGLLGGAKRS-------GGDNVCRADALKLPFREESFDAALSIAVIH 114 (293)
T ss_pred CcceeeecccCCcccCc---CCCcceeeecchhhhhccccccC-------CCceeehhhhhcCCCCCCccccchhhhhhh
Confidence 47899999999986542 1233368999999 777666542 1125777899888776 8999999977777
Q ss_pred cccCcchHHHHHHHHhccccCCeEEEc
Q 016351 156 FLLRESMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 156 ~~~~e~~l~~~l~~~~~~L~~gG~ii~ 182 (391)
.+.....-..+++++.+.|+|||.+++
T Consensus 115 hlsT~~RR~~~l~e~~r~lrpgg~~lv 141 (293)
T KOG1331|consen 115 HLSTRERRERALEELLRVLRPGGNALV 141 (293)
T ss_pred hhhhHHHHHHHHHHHHHHhcCCCceEE
Confidence 777666677889999999999998763
|
|
| >KOG1227 consensus Putative methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.00038 Score=63.72 Aligned_cols=97 Identities=25% Similarity=0.356 Sum_probs=77.9
Q ss_pred CCCEEEEECCcccHHHH-HHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEccccc
Q 016351 78 QGKTVLDVGTGSGILAI-WSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMGY 155 (391)
Q Consensus 78 ~~~~VLDlGcGtG~l~~-~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~~D~Ivse~~~~ 155 (391)
.+..|.|+-+|-|.+++ .+.++||+.|+|+|.+ ..++..+++++.|+..++..++.+|.+...+....|-|.. +-
T Consensus 194 ~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~~~~~~~AdrVnL---GL 270 (351)
T KOG1227|consen 194 DGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRNPKPRLRADRVNL---GL 270 (351)
T ss_pred ccchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhccccccCccccchheee---cc
Confidence 45789999999999999 8899999999999999 8899999999999998889999999998877788898884 44
Q ss_pred cccCcchHHHHHHHHhccccCCeE-EE
Q 016351 156 FLLRESMFDSVICARDRWLKPTGV-MY 181 (391)
Q Consensus 156 ~~~~e~~l~~~l~~~~~~L~~gG~-ii 181 (391)
....+.-.+.. .++|+|.|- ++
T Consensus 271 lPSse~~W~~A----~k~Lk~eggsil 293 (351)
T KOG1227|consen 271 LPSSEQGWPTA----IKALKPEGGSIL 293 (351)
T ss_pred ccccccchHHH----HHHhhhcCCcEE
Confidence 44445444433 345677543 44
|
|
| >KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.011 Score=54.83 Aligned_cols=103 Identities=20% Similarity=0.173 Sum_probs=67.0
Q ss_pred CCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEE--------------------------
Q 016351 79 GKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEV-------------------------- 131 (391)
Q Consensus 79 ~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~-------------------------- 131 (391)
..+||-=|||.|.|+..++..|. .+-|=|.| -|+-...=.+..-..++.+++
T Consensus 151 ki~iLvPGaGlGRLa~dla~~G~-~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD~~ 229 (369)
T KOG2798|consen 151 KIRILVPGAGLGRLAYDLACLGF-KCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPDIH 229 (369)
T ss_pred CceEEecCCCchhHHHHHHHhcc-cccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeeccccccccccccccccCcccc
Confidence 46799999999999999999998 58888999 675443333321112222211
Q ss_pred -------------EEcccccCCCC----CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcccc
Q 016351 132 -------------IEGSVEDIVLP----EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 132 -------------i~~d~~~~~~~----~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~~ 185 (391)
..||+.+.-.. +.||+|+. .++.+.....-.+++.+.+.|+|||+.|--.+
T Consensus 230 p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvT---cfFIDTa~NileYi~tI~~iLk~GGvWiNlGP 297 (369)
T KOG2798|consen 230 PASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVT---CFFIDTAHNILEYIDTIYKILKPGGVWINLGP 297 (369)
T ss_pred ccccCCCCCCccccccceeEEecCcCCCCccceEEE---EEEeechHHHHHHHHHHHHhccCCcEEEeccc
Confidence 22343333111 36999986 35555555556689999999999998884433
|
|
| >KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.0051 Score=52.72 Aligned_cols=94 Identities=26% Similarity=0.293 Sum_probs=60.5
Q ss_pred CCCCEEEEECCcccHHHHHHHHc--CCCeEEEEechHHHHHHHHHHHHcCCCCcEEEEEc-ccccC--------CCC-Cc
Q 016351 77 FQGKTVLDVGTGSGILAIWSAQA--GARKVYAVEATKMSDHARTLVKANNLQDVVEVIEG-SVEDI--------VLP-EK 144 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~l~~~~a~~--g~~~V~avD~s~~~~~a~~~~~~~~~~~~v~~i~~-d~~~~--------~~~-~~ 144 (391)
.++.+|||+||..|.++..+.+. ....|.|||+-... .... ++++++ |+++. .+| .+
T Consensus 68 ~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~----------p~~G-a~~i~~~dvtdp~~~~ki~e~lp~r~ 136 (232)
T KOG4589|consen 68 RPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIE----------PPEG-ATIIQGNDVTDPETYRKIFEALPNRP 136 (232)
T ss_pred CCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeecc----------CCCC-cccccccccCCHHHHHHHHHhCCCCc
Confidence 46799999999999999998886 34479999986321 1112 566666 66653 134 78
Q ss_pred ccEEEEcccccc-----ccCcch---HHHHHHHHhccccCCeEEE
Q 016351 145 VDVIISEWMGYF-----LLRESM---FDSVICARDRWLKPTGVMY 181 (391)
Q Consensus 145 ~D~Ivse~~~~~-----~~~e~~---l~~~l~~~~~~L~~gG~ii 181 (391)
+|+|+|+..... .++... ...++.-....+.|+|.++
T Consensus 137 VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fv 181 (232)
T KOG4589|consen 137 VDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFV 181 (232)
T ss_pred ccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEE
Confidence 999999764221 112111 1223344456778999877
|
|
| >KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown] | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.00028 Score=61.16 Aligned_cols=92 Identities=24% Similarity=0.320 Sum_probs=61.3
Q ss_pred CCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEE-ccccc
Q 016351 78 QGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIIS-EWMGY 155 (391)
Q Consensus 78 ~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~~D~Ivs-e~~~~ 155 (391)
++.++||+|+|.|-++..++.. ..+|+|.|.| .|....+++ ++ .++.. .+-....-++|+|.| +.+.-
T Consensus 112 ~~~~lLDlGAGdGeit~~m~p~-feevyATElS~tMr~rL~kk----~y----nVl~~-~ew~~t~~k~dli~clNlLDR 181 (288)
T KOG3987|consen 112 EPVTLLDLGAGDGEITLRMAPT-FEEVYATELSWTMRDRLKKK----NY----NVLTE-IEWLQTDVKLDLILCLNLLDR 181 (288)
T ss_pred CCeeEEeccCCCcchhhhhcch-HHHHHHHHhhHHHHHHHhhc----CC----ceeee-hhhhhcCceeehHHHHHHHHh
Confidence 3479999999999999988876 3479999999 887665432 22 12110 011111247999998 33333
Q ss_pred cccCcchHHHHHHHHhccccC-CeEEEcc
Q 016351 156 FLLRESMFDSVICARDRWLKP-TGVMYPS 183 (391)
Q Consensus 156 ~~~~e~~l~~~l~~~~~~L~~-gG~ii~~ 183 (391)
+ -+.-.+++.+..+|+| +|.+|..
T Consensus 182 c----~~p~kLL~Di~~vl~psngrviva 206 (288)
T KOG3987|consen 182 C----FDPFKLLEDIHLVLAPSNGRVIVA 206 (288)
T ss_pred h----cChHHHHHHHHHHhccCCCcEEEE
Confidence 3 2455678888889999 8887755
|
|
| >PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.0075 Score=55.28 Aligned_cols=106 Identities=21% Similarity=0.218 Sum_probs=64.7
Q ss_pred CEEEEECCccc--HHHHHHHHc--CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccC-------------CC
Q 016351 80 KTVLDVGTGSG--ILAIWSAQA--GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDI-------------VL 141 (391)
Q Consensus 80 ~~VLDlGcGtG--~l~~~~a~~--g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~-------------~~ 141 (391)
...||||||-= .....+|+. ...+|+-||.+ -.+..++.....+.- .+..++++|+++. .+
T Consensus 70 rQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~-g~t~~v~aD~r~p~~iL~~p~~~~~lD~ 148 (267)
T PF04672_consen 70 RQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPR-GRTAYVQADLRDPEAILAHPEVRGLLDF 148 (267)
T ss_dssp -EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TT-SEEEEEE--TT-HHHHHCSHHHHCC--T
T ss_pred ceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCC-ccEEEEeCCCCCHHHHhcCHHHHhcCCC
Confidence 67999999942 234445553 44589999999 567888887776532 2489999999884 23
Q ss_pred CCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEccccee
Q 016351 142 PEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHARM 187 (391)
Q Consensus 142 ~~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~~~~ 187 (391)
.+++=+++...+ +++..+.....++..++..|.||..++++..+.
T Consensus 149 ~rPVavll~~vL-h~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~ 193 (267)
T PF04672_consen 149 DRPVAVLLVAVL-HFVPDDDDPAGIVARLRDALAPGSYLAISHATD 193 (267)
T ss_dssp TS--EEEECT-G-GGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-
T ss_pred CCCeeeeeeeee-ccCCCccCHHHHHHHHHHhCCCCceEEEEecCC
Confidence 355666665554 455555578899999999999999999886653
|
; PDB: 3GIW_A 3GO4_A 2QE6_A. |
| >COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.0034 Score=58.88 Aligned_cols=114 Identities=18% Similarity=0.185 Sum_probs=67.2
Q ss_pred HHHHhcCCCCCCCEEEEECCcccHHHHHHHHc--CCCeEEEEechHHHHHHHHHHHHcCCCCcEEEEEcccccC--CCC-
Q 016351 68 NSIFQNKHHFQGKTVLDVGTGSGILAIWSAQA--GARKVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVEDI--VLP- 142 (391)
Q Consensus 68 ~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~--g~~~V~avD~s~~~~~a~~~~~~~~~~~~v~~i~~d~~~~--~~~- 142 (391)
..+....+.+..+.+||+|.|.|.-..++-.. -.+.++.+|.|+.+...-.-+..|-...+......|+..- +++
T Consensus 103 ~~L~~~~~dfapqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~ 182 (484)
T COG5459 103 DELQKRVPDFAPQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPA 182 (484)
T ss_pred HHHHHhCCCcCcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCCc
Confidence 33444456677788999999988755444333 1346888898865555555555554433334444444332 222
Q ss_pred -CcccEEEEcccccccc--CcchHHHHHHHHhccccCCeEEEcc
Q 016351 143 -EKVDVIISEWMGYFLL--RESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 143 -~~~D~Ivse~~~~~~~--~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
..|++++. .+..+. .+..+...++.+..++.|||.+++.
T Consensus 183 ad~ytl~i~--~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lViv 224 (484)
T COG5459 183 ADLYTLAIV--LDELLPDGNEKPIQVNIERLWNLLAPGGHLVIV 224 (484)
T ss_pred cceeehhhh--hhhhccccCcchHHHHHHHHHHhccCCCeEEEE
Confidence 55666654 122222 2233555788888999999988754
|
|
| >PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.0046 Score=54.60 Aligned_cols=83 Identities=23% Similarity=0.268 Sum_probs=60.3
Q ss_pred CEEEEECCcccHHHHHHHHcCCCeEEEEechHHHHHHHHHHHHcCCCCcEEEEEcccccCCCC----CcccEEEEccccc
Q 016351 80 KTVLDVGTGSGILAIWSAQAGARKVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVEDIVLP----EKVDVIISEWMGY 155 (391)
Q Consensus 80 ~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~----~~~D~Ivse~~~~ 155 (391)
.++|||||=+...... ..+.-.|++||+++. . -.+.+.|+.+.++| ++||+|++.++-.
T Consensus 53 lrlLEVGals~~N~~s--~~~~fdvt~IDLns~---------~------~~I~qqDFm~rplp~~~~e~FdvIs~SLVLN 115 (219)
T PF11968_consen 53 LRLLEVGALSTDNACS--TSGWFDVTRIDLNSQ---------H------PGILQQDFMERPLPKNESEKFDVISLSLVLN 115 (219)
T ss_pred ceEEeecccCCCCccc--ccCceeeEEeecCCC---------C------CCceeeccccCCCCCCcccceeEEEEEEEEe
Confidence 6899999976543322 233336999999831 0 35567788776654 7999999988766
Q ss_pred cccCcchHHHHHHHHhccccCCeE
Q 016351 156 FLLRESMFDSVICARDRWLKPTGV 179 (391)
Q Consensus 156 ~~~~e~~l~~~l~~~~~~L~~gG~ 179 (391)
+.........++..+.++|+|+|.
T Consensus 116 fVP~p~~RG~Ml~r~~~fL~~~g~ 139 (219)
T PF11968_consen 116 FVPDPKQRGEMLRRAHKFLKPPGL 139 (219)
T ss_pred eCCCHHHHHHHHHHHHHHhCCCCc
Confidence 666555667889999999999998
|
|
| >PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.01 Score=53.70 Aligned_cols=83 Identities=16% Similarity=0.202 Sum_probs=57.2
Q ss_pred HHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC
Q 016351 64 DAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL 141 (391)
Q Consensus 64 ~~~~~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~ 141 (391)
+.+.+.+...+ .+..+|+|||||.=.+++..... ....++|+|++ .+++.........+.. .++...|...-..
T Consensus 93 d~fY~~if~~~--~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~--~~~~v~Dl~~~~~ 168 (251)
T PF07091_consen 93 DEFYDEIFGRI--PPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVP--HDARVRDLLSDPP 168 (251)
T ss_dssp HHHHHHHCCCS-----SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-C--EEEEEE-TTTSHT
T ss_pred HHHHHHHHhcC--CCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCC--cceeEeeeeccCC
Confidence 34444444432 23689999999998888765544 22389999999 9999999999998877 6666668777655
Q ss_pred CCcccEEEE
Q 016351 142 PEKVDVIIS 150 (391)
Q Consensus 142 ~~~~D~Ivs 150 (391)
+...|+.+.
T Consensus 169 ~~~~DlaLl 177 (251)
T PF07091_consen 169 KEPADLALL 177 (251)
T ss_dssp TSEESEEEE
T ss_pred CCCcchhhH
Confidence 688999885
|
|
| >TIGR00006 S-adenosyl-methyltransferase MraW | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.016 Score=54.54 Aligned_cols=82 Identities=13% Similarity=0.180 Sum_probs=64.5
Q ss_pred HHHhcCCCCCCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC-----C
Q 016351 69 SIFQNKHHFQGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV-----L 141 (391)
Q Consensus 69 ~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~-----~ 141 (391)
.+...+...++..++|.=+|.|..+..+++. +..+|+|+|.+ .++..|++..+.. .++++++++++.++. .
T Consensus 11 Evl~~L~~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~--~~R~~~i~~nF~~l~~~l~~~ 88 (305)
T TIGR00006 11 EVVEGLNIKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDF--EGRVVLIHDNFANFFEHLDEL 88 (305)
T ss_pred HHHHhcCcCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhc--CCcEEEEeCCHHHHHHHHHhc
Confidence 3444455567789999999999999998876 34689999999 8999998887653 467999999988752 1
Q ss_pred C-CcccEEEEcc
Q 016351 142 P-EKVDVIISEW 152 (391)
Q Consensus 142 ~-~~~D~Ivse~ 152 (391)
+ .++|.|+.++
T Consensus 89 ~~~~vDgIl~DL 100 (305)
T TIGR00006 89 LVTKIDGILVDL 100 (305)
T ss_pred CCCcccEEEEec
Confidence 2 5799999865
|
Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn. |
| >KOG2671 consensus Putative RNA methylase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.0025 Score=59.63 Aligned_cols=77 Identities=21% Similarity=0.233 Sum_probs=61.8
Q ss_pred CCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHH-------HHHHHHHHcCCCC-cEEEEEcccccCCCC--Cc
Q 016351 76 HFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSD-------HARTLVKANNLQD-VVEVIEGSVEDIVLP--EK 144 (391)
Q Consensus 76 ~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~-------~a~~~~~~~~~~~-~v~~i~~d~~~~~~~--~~ 144 (391)
..+|+.|.|=-.|||.+...+|..|+ .|+|.|++ .++. -.+.++++.|... -+.++.+|..+-.+- ..
T Consensus 206 v~pGdivyDPFVGTGslLvsaa~FGa-~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn~~~rsn~~ 284 (421)
T KOG2671|consen 206 VKPGDIVYDPFVGTGSLLVSAAHFGA-YVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSNPPLRSNLK 284 (421)
T ss_pred cCCCCEEecCccccCceeeehhhhcc-eeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeecccCcchhhcce
Confidence 45789999999999999999999999 89999999 7665 2466788877543 367788888775443 68
Q ss_pred ccEEEEccc
Q 016351 145 VDVIISEWM 153 (391)
Q Consensus 145 ~D~Ivse~~ 153 (391)
||.|||++.
T Consensus 285 fDaIvcDPP 293 (421)
T KOG2671|consen 285 FDAIVCDPP 293 (421)
T ss_pred eeEEEeCCC
Confidence 999999884
|
|
| >KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.01 Score=52.58 Aligned_cols=96 Identities=21% Similarity=0.334 Sum_probs=65.2
Q ss_pred CCCCC-CEEEEECCcccHHHHHHHHcCC----------CeEEEEechHHHHHHHHHHHHcCCCCcEEEEEcccccCC---
Q 016351 75 HHFQG-KTVLDVGTGSGILAIWSAQAGA----------RKVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVEDIV--- 140 (391)
Q Consensus 75 ~~~~~-~~VLDlGcGtG~l~~~~a~~g~----------~~V~avD~s~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~--- 140 (391)
+.+++ ++|+|+.+..|.++..+++.-. +++++||+.+|+. ++. |.-+++|+....
T Consensus 37 ~i~~gv~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~MaP----------I~G-V~qlq~DIT~~stae 105 (294)
T KOG1099|consen 37 QIFEGVKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMAP----------IEG-VIQLQGDITSASTAE 105 (294)
T ss_pred hHHhhhhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCCc----------cCc-eEEeecccCCHhHHH
Confidence 34444 6899999999999999887521 1399999987642 223 788899988753
Q ss_pred -----CC-CcccEEEEccccccc-cCc-------chHHHHHHHHhccccCCeEEE
Q 016351 141 -----LP-EKVDVIISEWMGYFL-LRE-------SMFDSVICARDRWLKPTGVMY 181 (391)
Q Consensus 141 -----~~-~~~D~Ivse~~~~~~-~~e-------~~l~~~l~~~~~~L~~gG~ii 181 (391)
+. ++.|+|+|+...... .++ ..+...|.-...+|+|||.|+
T Consensus 106 ~Ii~hfggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FV 160 (294)
T KOG1099|consen 106 AIIEHFGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFV 160 (294)
T ss_pred HHHHHhCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeee
Confidence 33 699999997643221 111 112233444568999999987
|
|
| >KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.031 Score=50.78 Aligned_cols=99 Identities=19% Similarity=0.229 Sum_probs=60.0
Q ss_pred CCCEEEEECCcccHHHHHHHHcCCCeEEEEechHHHHHHHHHHHH-----cCCCCcEEEEEcccccC---C-CCCc-ccE
Q 016351 78 QGKTVLDVGTGSGILAIWSAQAGARKVYAVEATKMSDHARTLVKA-----NNLQDVVEVIEGSVEDI---V-LPEK-VDV 147 (391)
Q Consensus 78 ~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s~~~~~a~~~~~~-----~~~~~~v~~i~~d~~~~---~-~~~~-~D~ 147 (391)
+...||++|+|+|..++.+|..+...|.-.|..........+... +++...+.+...+-.+. . .+.. +|+
T Consensus 86 ~~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~Dl 165 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAALLLGAEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFDL 165 (248)
T ss_pred cceeEEEecCCccHHHHHHHHHhcceeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCcccE
Confidence 356799999999999999998654478888887444444444333 33332344443332221 1 1133 899
Q ss_pred EEEccccccccCcchHHHHHHHHhccccCCeE
Q 016351 148 IISEWMGYFLLRESMFDSVICARDRWLKPTGV 179 (391)
Q Consensus 148 Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ 179 (391)
|++.-+ ...++....+...+..+|..++.
T Consensus 166 ilasDv---vy~~~~~e~Lv~tla~ll~~~~~ 194 (248)
T KOG2793|consen 166 ILASDV---VYEEESFEGLVKTLAFLLAKDGT 194 (248)
T ss_pred EEEeee---eecCCcchhHHHHHHHHHhcCCe
Confidence 997322 22233455667777778888883
|
|
| >KOG2920 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.003 Score=57.92 Aligned_cols=110 Identities=24% Similarity=0.361 Sum_probs=62.8
Q ss_pred CCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHH-------HHHHHH--HcCCCCcEEEEEcccccCCC--CC
Q 016351 76 HFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDH-------ARTLVK--ANNLQDVVEVIEGSVEDIVL--PE 143 (391)
Q Consensus 76 ~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~-------a~~~~~--~~~~~~~v~~i~~d~~~~~~--~~ 143 (391)
...+++|||+|||+|+.++.+...|+..+...|.| ..++. ++..+. .+....-..+++.+..++.+ .+
T Consensus 114 ~~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~~~t~pn~~~~~~~~~~~~e~~~~~~i~~s~l~dg~~~~t~ 193 (282)
T KOG2920|consen 114 SFSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLRLVTLPNILVNSHAGVEEKENHKVDEILNSLLSDGVFNHTE 193 (282)
T ss_pred EecCceeEecCCcccccchhhhhhccceeeeEecchhheeeecccceecchhhhhhhhhcccceeccccccccchhhhcc
Confidence 35679999999999999999999987789999988 55521 111111 11111112333331112222 13
Q ss_pred --cccEEEEccccccccCcchHHHH-HHHHhccccCCeEEEcccceeE
Q 016351 144 --KVDVIISEWMGYFLLRESMFDSV-ICARDRWLKPTGVMYPSHARMW 188 (391)
Q Consensus 144 --~~D~Ivse~~~~~~~~e~~l~~~-l~~~~~~L~~gG~ii~~~~~~~ 188 (391)
.||+|.+.-.-|... .++.+ ......+++++|+++...-..|
T Consensus 194 ~~~ydlIlsSetiy~~~---~~~~~~~~~r~~l~~~D~~~~~aAK~~y 238 (282)
T KOG2920|consen 194 RTHYDLILSSETIYSID---SLAVLYLLHRPCLLKTDGVFYVAAKKLY 238 (282)
T ss_pred ccchhhhhhhhhhhCcc---hhhhhHhhhhhhcCCccchhhhhhHhhc
Confidence 788888633223332 23333 5556678889998775543333
|
|
| >cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.016 Score=54.11 Aligned_cols=65 Identities=22% Similarity=0.288 Sum_probs=50.7
Q ss_pred EEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC---CCcccEEEEcc
Q 016351 81 TVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL---PEKVDVIISEW 152 (391)
Q Consensus 81 ~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~---~~~~D~Ivse~ 152 (391)
+|+|+.||.|.++..+.++|...|.++|++ .+++..+.+.. + .++.+|+.++.. ...+|+|+..+
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~-----~--~~~~~Di~~~~~~~~~~~~D~l~~gp 70 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFP-----N--KLIEGDITKIDEKDFIPDIDLLTGGF 70 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCC-----C--CCccCccccCchhhcCCCCCEEEeCC
Confidence 589999999999999999999889999999 66666655542 1 256778877653 35799999855
|
Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. |
| >COG4798 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.026 Score=48.80 Aligned_cols=111 Identities=23% Similarity=0.274 Sum_probs=72.0
Q ss_pred CCCCCCCEEEEECCcccHHHHHHHHc-CCC-eEEEEechHHH-------HHHHHHHHHcCCCCcEEEEEcccccCCCCCc
Q 016351 74 KHHFQGKTVLDVGTGSGILAIWSAQA-GAR-KVYAVEATKMS-------DHARTLVKANNLQDVVEVIEGSVEDIVLPEK 144 (391)
Q Consensus 74 ~~~~~~~~VLDlGcGtG~l~~~~a~~-g~~-~V~avD~s~~~-------~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~ 144 (391)
....++.+|+|+=.|.|.++..++.. |++ .|++.=..+.. ...+...++....| ++.+-.+...+..+++
T Consensus 44 aGlkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN-~e~~~~~~~A~~~pq~ 122 (238)
T COG4798 44 AGLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYAN-VEVIGKPLVALGAPQK 122 (238)
T ss_pred eccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhh-hhhhCCcccccCCCCc
Confidence 34567899999999999999998886 432 67776443221 11122222223333 6777777777776688
Q ss_pred ccEEEEccccccc----cCcchHHHHHHHHhccccCCeEEEcccc
Q 016351 145 VDVIISEWMGYFL----LRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 145 ~D~Ivse~~~~~~----~~e~~l~~~l~~~~~~L~~gG~ii~~~~ 185 (391)
.|++......+.+ .+......+..++.+.|||||+++....
T Consensus 123 ~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH 167 (238)
T COG4798 123 LDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDH 167 (238)
T ss_pred ccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEec
Confidence 8888764332222 2234567788889999999999876544
|
|
| >PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.032 Score=50.25 Aligned_cols=75 Identities=21% Similarity=0.200 Sum_probs=44.6
Q ss_pred CEEEEECCcccHHHHHHHHcCCCeEEEEechH-HHHH---HHHHHHHcCCC-----CcEEEEEcccccC-CC-CCcccEE
Q 016351 80 KTVLDVGTGSGILAIWSAQAGARKVYAVEATK-MSDH---ARTLVKANNLQ-----DVVEVIEGSVEDI-VL-PEKVDVI 148 (391)
Q Consensus 80 ~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s~-~~~~---a~~~~~~~~~~-----~~v~~i~~d~~~~-~~-~~~~D~I 148 (391)
.+|||.=+|-|.-++.+|..|. +|+++|.|+ +... +.++.....-. .+|+++++|..++ .. ..++|+|
T Consensus 77 ~~VLDaTaGLG~Da~vlA~~G~-~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~~~~~s~DVV 155 (234)
T PF04445_consen 77 PSVLDATAGLGRDAFVLASLGC-KVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLRQPDNSFDVV 155 (234)
T ss_dssp --EEETT-TTSHHHHHHHHHT---EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCCCHSS--SEE
T ss_pred CEEEECCCcchHHHHHHHccCC-eEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHhhcCCCCCEE
Confidence 4899999999999999998888 699999994 3322 33333333221 3699999998885 32 3799999
Q ss_pred EEccccc
Q 016351 149 ISEWMGY 155 (391)
Q Consensus 149 vse~~~~ 155 (391)
..++|..
T Consensus 156 Y~DPMFp 162 (234)
T PF04445_consen 156 YFDPMFP 162 (234)
T ss_dssp EE--S--
T ss_pred EECCCCC
Confidence 9999844
|
; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A. |
| >COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.027 Score=53.62 Aligned_cols=97 Identities=26% Similarity=0.273 Sum_probs=77.2
Q ss_pred CCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC--CcccEEEEcccc
Q 016351 79 GKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP--EKVDVIISEWMG 154 (391)
Q Consensus 79 ~~~VLDlGcGtG~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~--~~~D~Ivse~~~ 154 (391)
..+|||.=+|||+-++..+.. +..+|+.-|+| ...+.+++|++.|...+ ..+++.|...+... ..||+|=.++++
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~~~-~~v~n~DAN~lm~~~~~~fd~IDiDPFG 131 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSGED-AEVINKDANALLHELHRAFDVIDIDPFG 131 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCccc-ceeecchHHHHHHhcCCCccEEecCCCC
Confidence 688999999999999988876 55489999999 89999999999994444 67777887776433 789999887765
Q ss_pred ccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 155 YFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 155 ~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
.- ..+++++.+.++.+|++-..
T Consensus 132 SP-------aPFlDaA~~s~~~~G~l~vT 153 (380)
T COG1867 132 SP-------APFLDAALRSVRRGGLLCVT 153 (380)
T ss_pred CC-------chHHHHHHHHhhcCCEEEEE
Confidence 43 34677888888999977643
|
|
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.014 Score=57.69 Aligned_cols=104 Identities=16% Similarity=0.209 Sum_probs=66.5
Q ss_pred CCEEEEECCcccHHHHHHHHcCCC--eEEEEechHHHHHHHHHHHHcCCCCcEEEEEcccccCC-CCCcccEEEEccccc
Q 016351 79 GKTVLDVGTGSGILAIWSAQAGAR--KVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVEDIV-LPEKVDVIISEWMGY 155 (391)
Q Consensus 79 ~~~VLDlGcGtG~l~~~~a~~g~~--~V~avD~s~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~-~~~~~D~Ivse~~~~ 155 (391)
-..|+|..+|.|.++.++.+...- .|+-+.....+. .+-.-|+ |-+.+.=.+.++ .|..||+|.++.+..
T Consensus 366 iRNVMDMnAg~GGFAAAL~~~~VWVMNVVP~~~~ntL~----vIydRGL---IG~yhDWCE~fsTYPRTYDLlHA~~lfs 438 (506)
T PF03141_consen 366 IRNVMDMNAGYGGFAAALIDDPVWVMNVVPVSGPNTLP----VIYDRGL---IGVYHDWCEAFSTYPRTYDLLHADGLFS 438 (506)
T ss_pred eeeeeeecccccHHHHHhccCCceEEEecccCCCCcch----hhhhccc---chhccchhhccCCCCcchhheehhhhhh
Confidence 378999999999999888776431 122221112121 1222344 334443333343 468999999976655
Q ss_pred cccCcchHHHHHHHHhccccCCeEEEcccceeEE
Q 016351 156 FLLRESMFDSVICARDRWLKPTGVMYPSHARMWV 189 (391)
Q Consensus 156 ~~~~e~~l~~~l~~~~~~L~~gG~ii~~~~~~~~ 189 (391)
.....-.+..++-++.|.|+|+|.+|+......+
T Consensus 439 ~~~~rC~~~~illEmDRILRP~G~~iiRD~~~vl 472 (506)
T PF03141_consen 439 LYKDRCEMEDILLEMDRILRPGGWVIIRDTVDVL 472 (506)
T ss_pred hhcccccHHHHHHHhHhhcCCCceEEEeccHHHH
Confidence 5555555788999999999999999977654443
|
; GO: 0008168 methyltransferase activity |
| >COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.017 Score=55.92 Aligned_cols=93 Identities=27% Similarity=0.289 Sum_probs=60.1
Q ss_pred CCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEc-cc----ccCCCCCcccEEE
Q 016351 78 QGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEG-SV----EDIVLPEKVDVII 149 (391)
Q Consensus 78 ~~~~VLDlGcGt-G~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~-d~----~~~~~~~~~D~Iv 149 (391)
++.+|+-+|||. |+++..+++. |+++|+++|.+ .-++.|++.....- +..... +. .++.-...+|+++
T Consensus 168 ~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~----~~~~~~~~~~~~~~~~t~g~g~D~vi 243 (350)
T COG1063 168 PGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADV----VVNPSEDDAGAEILELTGGRGADVVI 243 (350)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeE----eecCccccHHHHHHHHhCCCCCCEEE
Confidence 445899999998 9998888876 88899999999 77888876432210 111111 11 1111123699998
Q ss_pred EccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 150 SEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 150 se~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
- ..+ ....+..+.++++++|.++..
T Consensus 244 e-~~G--------~~~~~~~ai~~~r~gG~v~~v 268 (350)
T COG1063 244 E-AVG--------SPPALDQALEALRPGGTVVVV 268 (350)
T ss_pred E-CCC--------CHHHHHHHHHHhcCCCEEEEE
Confidence 4 122 123566677889999988743
|
|
| >KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.0044 Score=60.75 Aligned_cols=100 Identities=19% Similarity=0.262 Sum_probs=83.2
Q ss_pred CCCEEEEECCcccHHHHHHHHc--CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC--C---CcccEEE
Q 016351 78 QGKTVLDVGTGSGILAIWSAQA--GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL--P---EKVDVII 149 (391)
Q Consensus 78 ~~~~VLDlGcGtG~l~~~~a~~--g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~--~---~~~D~Iv 149 (391)
++.+|||.=|+||+-++..|+. |..+|+|-|.+ ..+...+++++.|+..+.++..+.|+..+.. + ..||+|=
T Consensus 109 ~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~~~~FDvID 188 (525)
T KOG1253|consen 109 KSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPMVAKFFDVID 188 (525)
T ss_pred CcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhccccccccceEe
Confidence 3468999999999999988886 67789999999 8899999999999999999999999877532 2 7899999
Q ss_pred EccccccccCcchHHHHHHHHhccccCCeEEEccc
Q 016351 150 SEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 150 se~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~ 184 (391)
.|+.|. ...+|+.+.+.++.||++....
T Consensus 189 LDPyGs-------~s~FLDsAvqav~~gGLL~vT~ 216 (525)
T KOG1253|consen 189 LDPYGS-------PSPFLDSAVQAVRDGGLLCVTC 216 (525)
T ss_pred cCCCCC-------ccHHHHHHHHHhhcCCEEEEEe
Confidence 877543 3467888889999999887553
|
|
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.061 Score=51.24 Aligned_cols=92 Identities=27% Similarity=0.292 Sum_probs=60.4
Q ss_pred CCCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcc-cccCC-CCCcccEEEE
Q 016351 76 HFQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGS-VEDIV-LPEKVDVIIS 150 (391)
Q Consensus 76 ~~~~~~VLDlGcGt-G~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d-~~~~~-~~~~~D~Ivs 150 (391)
..++++|+-+|+|- |.+++.+|++ |+ +|+++|.+ +.++.|++.-.. .++... ..... ..+.+|+|+.
T Consensus 164 ~~pG~~V~I~G~GGlGh~avQ~Aka~ga-~Via~~~~~~K~e~a~~lGAd-------~~i~~~~~~~~~~~~~~~d~ii~ 235 (339)
T COG1064 164 VKPGKWVAVVGAGGLGHMAVQYAKAMGA-EVIAITRSEEKLELAKKLGAD-------HVINSSDSDALEAVKEIADAIID 235 (339)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcCC-eEEEEeCChHHHHHHHHhCCc-------EEEEcCCchhhHHhHhhCcEEEE
Confidence 45789999999982 4677778884 85 89999999 878888765432 333322 11111 1245999996
Q ss_pred ccccccccCcchHHHHHHHHhccccCCeEEEcccc
Q 016351 151 EWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 151 e~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~~ 185 (391)
-. . ...+....+.|+++|.++..-.
T Consensus 236 tv----~------~~~~~~~l~~l~~~G~~v~vG~ 260 (339)
T COG1064 236 TV----G------PATLEPSLKALRRGGTLVLVGL 260 (339)
T ss_pred CC----C------hhhHHHHHHHHhcCCEEEEECC
Confidence 22 1 2235556678999999885544
|
|
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.064 Score=54.21 Aligned_cols=95 Identities=23% Similarity=0.323 Sum_probs=59.3
Q ss_pred CCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEccccc-----------CC--
Q 016351 77 FQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVED-----------IV-- 140 (391)
Q Consensus 77 ~~~~~VLDlGcGt-G~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~-----------~~-- 140 (391)
.++.+|+-+|||. |..++.+|+. |+ .|+++|.+ ..++.+++ .|. +++.-+..+ +.
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~lGA-~V~a~D~~~~rle~aes----lGA----~~v~i~~~e~~~~~~gya~~~s~~ 233 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSLGA-IVRAFDTRPEVAEQVES----MGA----EFLELDFEEEGGSGDGYAKVMSEE 233 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH----cCC----eEEEeccccccccccchhhhcchh
Confidence 4678999999998 8888887876 88 79999999 66665554 332 221111100 00
Q ss_pred ---------CC--CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 141 ---------LP--EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 141 ---------~~--~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
.. +.+|+||.-. ..........+.+...+.+||||+++.-
T Consensus 234 ~~~~~~~~~~~~~~gaDVVIeta---g~pg~~aP~lit~~~v~~mkpGgvIVdv 284 (509)
T PRK09424 234 FIKAEMALFAEQAKEVDIIITTA---LIPGKPAPKLITAEMVASMKPGSVIVDL 284 (509)
T ss_pred HHHHHHHHHHhccCCCCEEEECC---CCCcccCcchHHHHHHHhcCCCCEEEEE
Confidence 01 3689999632 1111111223347777889999998754
|
|
| >KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.025 Score=52.07 Aligned_cols=112 Identities=19% Similarity=0.195 Sum_probs=78.4
Q ss_pred CCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHc--CCC-CcEEEEEcccccCC--C-CCcccEEE
Q 016351 78 QGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKAN--NLQ-DVVEVIEGSVEDIV--L-PEKVDVII 149 (391)
Q Consensus 78 ~~~~VLDlGcGtG~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~--~~~-~~v~~i~~d~~~~~--~-~~~~D~Iv 149 (391)
..++||-||.|.|......+++ ....+.-+|+. ..++..++..... ++. .+|.+.-||-..+- . .++||+|+
T Consensus 121 npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dVii 200 (337)
T KOG1562|consen 121 NPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDVII 200 (337)
T ss_pred CCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCceEEE
Confidence 4589999999999888777776 34478899999 7788887766643 333 46899999865541 2 37999999
Q ss_pred EccccccccCcch-HHHHHHHHhccccCCeEEEcccceeEE
Q 016351 150 SEWMGYFLLRESM-FDSVICARDRWLKPTGVMYPSHARMWV 189 (391)
Q Consensus 150 se~~~~~~~~e~~-l~~~l~~~~~~L~~gG~ii~~~~~~~~ 189 (391)
.+.-......+.. ...++.-+.+.||++|+++...-.+|+
T Consensus 201 ~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ec~wl 241 (337)
T KOG1562|consen 201 TDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQGECMWL 241 (337)
T ss_pred EecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEecceehH
Confidence 8653333332221 345677788999999998866544443
|
|
| >KOG3115 consensus Methyltransferase-like protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.41 E-value=0.042 Score=47.85 Aligned_cols=102 Identities=16% Similarity=0.191 Sum_probs=62.1
Q ss_pred CCEEEEECCcccHHHHHHHHcC-CCeEEEEech-HHHHHHHHHHHHcC-------CCCcEEEEEcccccCCCC----Ccc
Q 016351 79 GKTVLDVGTGSGILAIWSAQAG-ARKVYAVEAT-KMSDHARTLVKANN-------LQDVVEVIEGSVEDIVLP----EKV 145 (391)
Q Consensus 79 ~~~VLDlGcGtG~l~~~~a~~g-~~~V~avD~s-~~~~~a~~~~~~~~-------~~~~v~~i~~d~~~~~~~----~~~ 145 (391)
.-...|||||-|.|.+.++... -.-+.|.|+- .+.++.++++.+.. +.+ +.++..+....... ++.
T Consensus 61 kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~n-i~vlr~namk~lpn~f~kgqL 139 (249)
T KOG3115|consen 61 KVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPN-ISVLRTNAMKFLPNFFEKGQL 139 (249)
T ss_pred cceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhcccccccccc-ceeeeccchhhccchhhhccc
Confidence 3568999999999999888874 3468999999 88899888887754 333 56665554443211 111
Q ss_pred c-EEEEcccccccc----CcchHHHHHHHHhccccCCeEEE
Q 016351 146 D-VIISEWMGYFLL----RESMFDSVICARDRWLKPTGVMY 181 (391)
Q Consensus 146 D-~Ivse~~~~~~~----~e~~l~~~l~~~~~~L~~gG~ii 181 (391)
+ ..++-+=.++.- +.-....++....-+|++||.++
T Consensus 140 skmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~y 180 (249)
T KOG3115|consen 140 SKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILY 180 (249)
T ss_pred ccceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEE
Confidence 1 112211011110 00112456667777889999876
|
|
| >PRK09880 L-idonate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.59 E-value=0.14 Score=49.21 Aligned_cols=95 Identities=22% Similarity=0.283 Sum_probs=56.7
Q ss_pred CCCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC-CCcccEEEEc
Q 016351 76 HFQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL-PEKVDVIISE 151 (391)
Q Consensus 76 ~~~~~~VLDlGcGt-G~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~-~~~~D~Ivse 151 (391)
..++.+||-.|||. |.++..+|++ |+++|+++|.+ ..++.+++ .|....+..-..+..++.. .+.+|+|+.-
T Consensus 167 ~~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~----lGa~~vi~~~~~~~~~~~~~~g~~D~vid~ 242 (343)
T PRK09880 167 DLQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLARE----MGADKLVNPQNDDLDHYKAEKGYFDVSFEV 242 (343)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHH----cCCcEEecCCcccHHHHhccCCCCCEEEEC
Confidence 34678999999875 6677777776 77789999998 66666654 3432111111112222111 1358988852
Q ss_pred cccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 152 WMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 152 ~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
.+. ...+....++|+++|.++..
T Consensus 243 -~G~--------~~~~~~~~~~l~~~G~iv~~ 265 (343)
T PRK09880 243 -SGH--------PSSINTCLEVTRAKGVMVQV 265 (343)
T ss_pred -CCC--------HHHHHHHHHHhhcCCEEEEE
Confidence 221 12345556789999998854
|
|
| >cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1 | Back alignment and domain information |
|---|
Probab=94.58 E-value=0.074 Score=52.13 Aligned_cols=105 Identities=22% Similarity=0.204 Sum_probs=61.8
Q ss_pred CCCCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcc-c----ccCCCCCccc
Q 016351 75 HHFQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGS-V----EDIVLPEKVD 146 (391)
Q Consensus 75 ~~~~~~~VLDlGcGt-G~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d-~----~~~~~~~~~D 146 (391)
...++.+||.+|||. |.++..+|++ |..+|++++.+ ...+.+++.. +. ..+.....+ . .++.....+|
T Consensus 181 ~~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~---~~-~vi~~~~~~~~~~~l~~~~~~~~~D 256 (386)
T cd08283 181 EVKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHL---GA-ETINFEEVDDVVEALRELTGGRGPD 256 (386)
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcC---Cc-EEEcCCcchHHHHHHHHHcCCCCCC
Confidence 345678999999988 8888888776 66569999998 7777776542 11 112221111 1 1121124699
Q ss_pred EEEEccccc------------cccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 147 VIISEWMGY------------FLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 147 ~Ivse~~~~------------~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
+|+.-.-+. .+.........+....+.|+++|.++..
T Consensus 257 ~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~ 305 (386)
T cd08283 257 VCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSII 305 (386)
T ss_pred EEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEE
Confidence 988622100 0001111234567777889999988744
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T |
| >PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes | Back alignment and domain information |
|---|
Probab=94.53 E-value=0.76 Score=40.67 Aligned_cols=105 Identities=18% Similarity=0.140 Sum_probs=62.2
Q ss_pred CCCEEEEECCcccHHHHHHHHc---CCCeEEEEech-HHHHHHHHHHHH-------------------------------
Q 016351 78 QGKTVLDVGTGSGILAIWSAQA---GARKVYAVEAT-KMSDHARTLVKA------------------------------- 122 (391)
Q Consensus 78 ~~~~VLDlGcGtG~l~~~~a~~---g~~~V~avD~s-~~~~~a~~~~~~------------------------------- 122 (391)
.+-++.|-.||+|.+.-.+.-. ..+.|+|-|++ ++++.|++|..-
T Consensus 51 ~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~kps~~eAl~s 130 (246)
T PF11599_consen 51 GPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYGKPSHAEALES 130 (246)
T ss_dssp S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH--HHHHHHHHH
T ss_pred CCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcCCchHHHHHHH
Confidence 4468999999999875444332 23479999999 999999988751
Q ss_pred ----------cCCCCcEEEEEcccccC------CCCCcccEEEEccc-cccccCcc-----hHHHHHHHHhccccCCeEE
Q 016351 123 ----------NNLQDVVEVIEGSVEDI------VLPEKVDVIISEWM-GYFLLRES-----MFDSVICARDRWLKPTGVM 180 (391)
Q Consensus 123 ----------~~~~~~v~~i~~d~~~~------~~~~~~D~Ivse~~-~~~~~~e~-----~l~~~l~~~~~~L~~gG~i 180 (391)
.|-.....+...|+.+. ......|+|+.+.. +....|++ ....++..+...|.+++++
T Consensus 131 A~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g~~~~~p~~~ml~~l~~vLp~~sVV 210 (246)
T PF11599_consen 131 ADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQGEGSGGPVAQMLNSLAPVLPERSVV 210 (246)
T ss_dssp HHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS---HHHHHHHHHHHHCCS-TT-EE
T ss_pred HHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccCCCCCCcHHHHHHHHHhhCCCCcEE
Confidence 11112266777777763 33345799999763 44444443 4678899999999655655
Q ss_pred Ec
Q 016351 181 YP 182 (391)
Q Consensus 181 i~ 182 (391)
..
T Consensus 211 ~v 212 (246)
T PF11599_consen 211 AV 212 (246)
T ss_dssp EE
T ss_pred EE
Confidence 54
|
This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A. |
| >COG3129 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.45 E-value=0.068 Score=47.55 Aligned_cols=76 Identities=17% Similarity=0.297 Sum_probs=54.0
Q ss_pred CCCEEEEECCcccHH-HHH-HHHcCCCeEEEEech-HHHHHHHHHHHHc-CCCCcEEEEEcccccCCC------CCcccE
Q 016351 78 QGKTVLDVGTGSGIL-AIW-SAQAGARKVYAVEAT-KMSDHARTLVKAN-NLQDVVEVIEGSVEDIVL------PEKVDV 147 (391)
Q Consensus 78 ~~~~VLDlGcGtG~l-~~~-~a~~g~~~V~avD~s-~~~~~a~~~~~~~-~~~~~v~~i~~d~~~~~~------~~~~D~ 147 (391)
++.++||||.|.-.+ -+. .-..|. +.+|.|++ ..++.|+.++..| +++..|++....-.+--+ .+.||+
T Consensus 78 ~~i~~LDIGvGAnCIYPliG~~eYgw-rfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~~~~if~giig~nE~yd~ 156 (292)
T COG3129 78 KNIRILDIGVGANCIYPLIGVHEYGW-RFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKDSDAIFNGIIGKNERYDA 156 (292)
T ss_pred CceEEEeeccCcccccccccceeecc-eeecCccCHHHHHHHHHHHHcCcchhhheeEEeccCccccccccccccceeee
Confidence 456899999987433 221 222366 68999999 7899999999999 888778877654332211 278999
Q ss_pred EEEcccc
Q 016351 148 IISEWMG 154 (391)
Q Consensus 148 Ivse~~~ 154 (391)
.+|++..
T Consensus 157 tlCNPPF 163 (292)
T COG3129 157 TLCNPPF 163 (292)
T ss_pred EecCCCc
Confidence 9998743
|
|
| >KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=94.15 E-value=0.11 Score=48.78 Aligned_cols=93 Identities=20% Similarity=0.214 Sum_probs=61.6
Q ss_pred CCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEccc--ccC------CCC-Cc
Q 016351 77 FQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSV--EDI------VLP-EK 144 (391)
Q Consensus 77 ~~~~~VLDlGcGt-G~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~--~~~------~~~-~~ 144 (391)
..+.+||-+|+|. |++++.+|++ |+++|+.+|.+ .-++.|++ + |... +....... .++ .+. ..
T Consensus 168 k~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~-~---Ga~~-~~~~~~~~~~~~~~~~v~~~~g~~~ 242 (354)
T KOG0024|consen 168 KKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK-F---GATV-TDPSSHKSSPQELAELVEKALGKKQ 242 (354)
T ss_pred ccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH-h---CCeE-EeeccccccHHHHHHHHHhhccccC
Confidence 4678999999997 9999999998 99999999999 88888887 2 3221 22221111 111 112 45
Q ss_pred ccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 145 VDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 145 ~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
+|+.+.-. . ....++.....++++|.++..
T Consensus 243 ~d~~~dCs---G------~~~~~~aai~a~r~gGt~vlv 272 (354)
T KOG0024|consen 243 PDVTFDCS---G------AEVTIRAAIKATRSGGTVVLV 272 (354)
T ss_pred CCeEEEcc---C------chHHHHHHHHHhccCCEEEEe
Confidence 78887511 1 233455556778999987644
|
|
| >COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=94.08 E-value=0.42 Score=44.49 Aligned_cols=83 Identities=16% Similarity=0.166 Sum_probs=65.9
Q ss_pred HHHHhcCCCCCCCEEEEECCcccHHHHHHHHcC--CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC----
Q 016351 68 NSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAG--ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV---- 140 (391)
Q Consensus 68 ~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g--~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~---- 140 (391)
+.....+...++...+|.=-|.|..+..+.+.. ..+++|+|.+ .+++.|+++....+ ++++++++.+.++.
T Consensus 13 ~E~i~~L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~--~r~~~v~~~F~~l~~~l~ 90 (314)
T COG0275 13 NEVVELLAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD--GRVTLVHGNFANLAEALK 90 (314)
T ss_pred HHHHHhcccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC--CcEEEEeCcHHHHHHHHH
Confidence 344455566778999999999999998888774 3579999999 89999999888765 56999999988763
Q ss_pred -CC-CcccEEEEcc
Q 016351 141 -LP-EKVDVIISEW 152 (391)
Q Consensus 141 -~~-~~~D~Ivse~ 152 (391)
.. +++|-|+.++
T Consensus 91 ~~~i~~vDGiL~DL 104 (314)
T COG0275 91 ELGIGKVDGILLDL 104 (314)
T ss_pred hcCCCceeEEEEec
Confidence 11 5889988764
|
|
| >COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=94.01 E-value=0.41 Score=48.48 Aligned_cols=86 Identities=15% Similarity=0.099 Sum_probs=60.5
Q ss_pred HHHhcCCCCCCCEEEEECCcccHHHHHHHHc-C----CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC-
Q 016351 69 SIFQNKHHFQGKTVLDVGTGSGILAIWSAQA-G----ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL- 141 (391)
Q Consensus 69 ~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~-g----~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~- 141 (391)
.|.+.+...+..+|.|-.||+|.+...+++. + ...++|.|++ .....|+.+.--+|+...+...++|...-+.
T Consensus 177 liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~~~dtl~~~~~ 256 (489)
T COG0286 177 LIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANIRHGDTLSNPKH 256 (489)
T ss_pred HHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCccccccccccccCCcc
Confidence 3444444345579999999999876666554 2 2469999999 8899999999888886435666666544321
Q ss_pred -----CCcccEEEEcccc
Q 016351 142 -----PEKVDVIISEWMG 154 (391)
Q Consensus 142 -----~~~~D~Ivse~~~ 154 (391)
.++||.|++++..
T Consensus 257 ~~~~~~~~~D~viaNPPf 274 (489)
T COG0286 257 DDKDDKGKFDFVIANPPF 274 (489)
T ss_pred cccCCccceeEEEeCCCC
Confidence 2679999997643
|
|
| >PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2 | Back alignment and domain information |
|---|
Probab=93.84 E-value=0.1 Score=49.67 Aligned_cols=64 Identities=31% Similarity=0.418 Sum_probs=49.7
Q ss_pred EEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC---CCcccEEEEcc
Q 016351 81 TVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL---PEKVDVIISEW 152 (391)
Q Consensus 81 ~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~---~~~~D~Ivse~ 152 (391)
+++|+-||.|.+++.+.++|...|.|+|++ ..++.-+.+.. ....+|+.++.. ++.+|+++.-+
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~~N~~--------~~~~~Di~~~~~~~l~~~~D~l~ggp 69 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYKANFP--------EVICGDITEIDPSDLPKDVDLLIGGP 69 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHHHHHT--------EEEESHGGGCHHHHHHHT-SEEEEE-
T ss_pred cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhhhccc--------ccccccccccccccccccceEEEecc
Confidence 689999999999999999998889999999 66666665553 778899998853 23699999744
|
1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A .... |
| >KOG2078 consensus tRNA modification enzyme [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.54 E-value=0.029 Score=54.13 Aligned_cols=87 Identities=21% Similarity=0.360 Sum_probs=66.6
Q ss_pred hhhhhhhhhhhHhhcCChHhHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHH
Q 016351 43 YFCTYAFLYHQKEMLSDRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVK 121 (391)
Q Consensus 43 ~~~~~~~~~~~~~ml~d~~r~~~~~~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~ 121 (391)
|--.|+..||..++.....|... . ..++..|-|+-||.|.+++.+++.+. +|++-|.+ +++++.+.+++
T Consensus 223 Fk~DfskVYWnsRL~~Eherlsg-------~--fk~gevv~D~FaGvGPfa~Pa~kK~c-rV~aNDLNpesik~Lk~ni~ 292 (495)
T KOG2078|consen 223 FKFDFSKVYWNSRLSHEHERLSG-------L--FKPGEVVCDVFAGVGPFALPAAKKGC-RVYANDLNPESIKWLKANIK 292 (495)
T ss_pred EEEecceEEeeccchhHHHHHhh-------c--cCCcchhhhhhcCcCccccchhhcCc-EEEecCCCHHHHHHHHHhcc
Confidence 33446666765444433333322 2 24678899999999999999999985 89999999 99999999999
Q ss_pred HcCCCCc-EEEEEcccccC
Q 016351 122 ANNLQDV-VEVIEGSVEDI 139 (391)
Q Consensus 122 ~~~~~~~-v~~i~~d~~~~ 139 (391)
.|.+... |++...|..++
T Consensus 293 lNkv~~~~iei~Nmda~~F 311 (495)
T KOG2078|consen 293 LNKVDPSAIEIFNMDAKDF 311 (495)
T ss_pred ccccchhheeeecccHHHH
Confidence 9988776 88888887664
|
|
| >COG1568 Predicted methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.49 E-value=0.4 Score=43.96 Aligned_cols=76 Identities=20% Similarity=0.362 Sum_probs=60.9
Q ss_pred CCCCCEEEEECCcccHHHHHHHHcC-CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC----CcccEEE
Q 016351 76 HFQGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP----EKVDVII 149 (391)
Q Consensus 76 ~~~~~~VLDlGcGtG~l~~~~a~~g-~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~----~~~D~Iv 149 (391)
.+.++.|+-+| -.-+.+++++-.| +++|..||++ ..+....+.+++.|++| ++.+.-|+++. +| ++||+++
T Consensus 150 DL~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~~~-ie~~~~Dlr~p-lpe~~~~kFDvfi 226 (354)
T COG1568 150 DLEGKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGYNN-IEAFVFDLRNP-LPEDLKRKFDVFI 226 (354)
T ss_pred CcCCCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCccc-hhheeehhccc-ChHHHHhhCCeee
Confidence 45778999999 4446666655544 6689999999 89999999999999976 88898899884 33 7999999
Q ss_pred Ecccc
Q 016351 150 SEWMG 154 (391)
Q Consensus 150 se~~~ 154 (391)
.++..
T Consensus 227 TDPpe 231 (354)
T COG1568 227 TDPPE 231 (354)
T ss_pred cCchh
Confidence 98753
|
|
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=93.45 E-value=0.29 Score=45.84 Aligned_cols=46 Identities=20% Similarity=0.156 Sum_probs=40.9
Q ss_pred CCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHH
Q 016351 76 HFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKA 122 (391)
Q Consensus 76 ~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~ 122 (391)
..++..|||--||+|.-++++.+.|- +.+|+|++ +.++.|++++..
T Consensus 206 S~~GD~VLDPF~GSGTT~~AA~~lgR-~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 206 SNPGDIVLDPFAGSFTTGAVAKASGR-KFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred CCCCCEEEECCCCCcHHHHHHHHcCC-CEEEEeCCHHHHHHHHHHHHh
Confidence 46889999999999999999988876 79999999 899999988754
|
|
| >KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.38 E-value=0.27 Score=44.12 Aligned_cols=99 Identities=26% Similarity=0.251 Sum_probs=62.2
Q ss_pred cCCCCCCCEEEEECCcccHHHHHHHHc-CC-CeEEEEech-H----HHHHHHHHHHHcCCCCcEEEEEcccccCC----C
Q 016351 73 NKHHFQGKTVLDVGTGSGILAIWSAQA-GA-RKVYAVEAT-K----MSDHARTLVKANNLQDVVEVIEGSVEDIV----L 141 (391)
Q Consensus 73 ~~~~~~~~~VLDlGcGtG~l~~~~a~~-g~-~~V~avD~s-~----~~~~a~~~~~~~~~~~~v~~i~~d~~~~~----~ 141 (391)
.++..++.+||=||+++|.-.-.++.. |. .-|||||.| . ++..|+++ .| |-.|..|++... +
T Consensus 151 nihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkR------tN-iiPIiEDArhP~KYRml 223 (317)
T KOG1596|consen 151 NIHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKR------TN-IIPIIEDARHPAKYRML 223 (317)
T ss_pred ceeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhcc------CC-ceeeeccCCCchheeee
Confidence 345678899999999999876666665 32 369999988 3 22333322 12 555666776632 1
Q ss_pred CCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 142 PEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 142 ~~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
-.-+|+|+++....- ....+.-....+||+||-++++
T Consensus 224 VgmVDvIFaDvaqpd-----q~RivaLNA~~FLk~gGhfvis 260 (317)
T KOG1596|consen 224 VGMVDVIFADVAQPD-----QARIVALNAQYFLKNGGHFVIS 260 (317)
T ss_pred eeeEEEEeccCCCch-----hhhhhhhhhhhhhccCCeEEEE
Confidence 146788888653211 1222333456899999988865
|
|
| >PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria | Back alignment and domain information |
|---|
Probab=93.32 E-value=0.18 Score=47.50 Aligned_cols=81 Identities=17% Similarity=0.221 Sum_probs=56.4
Q ss_pred HHhcCCCCCCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC-----C-
Q 016351 70 IFQNKHHFQGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV-----L- 141 (391)
Q Consensus 70 i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~-----~- 141 (391)
+...+...++..++|.=-|.|..+..+.+. +..+|+|+|.+ .+++.|+++.+.. .+++.++++++.++. .
T Consensus 12 vl~~L~~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~--~~r~~~~~~~F~~l~~~l~~~~ 89 (310)
T PF01795_consen 12 VLEALNPKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKF--DDRFIFIHGNFSNLDEYLKELN 89 (310)
T ss_dssp HHHHHT--TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCC--CTTEEEEES-GGGHHHHHHHTT
T ss_pred HHHhhCcCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhc--cceEEEEeccHHHHHHHHHHcc
Confidence 334444567789999999999999998876 44699999999 8888888766543 577999999988862 2
Q ss_pred -CCcccEEEEcc
Q 016351 142 -PEKVDVIISEW 152 (391)
Q Consensus 142 -~~~~D~Ivse~ 152 (391)
..++|.|+.++
T Consensus 90 ~~~~~dgiL~DL 101 (310)
T PF01795_consen 90 GINKVDGILFDL 101 (310)
T ss_dssp TTS-EEEEEEE-
T ss_pred CCCccCEEEEcc
Confidence 26899999864
|
The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A. |
| >PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [] | Back alignment and domain information |
|---|
Probab=93.28 E-value=0.15 Score=39.79 Aligned_cols=32 Identities=22% Similarity=0.424 Sum_probs=27.0
Q ss_pred CCCEEEEECCcccHHHHHHHHcCCCeEEEEech
Q 016351 78 QGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT 110 (391)
Q Consensus 78 ~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s 110 (391)
+.....|||||.|+|.-.+.+.|. +=+|+|.-
T Consensus 58 ~~~~FVDlGCGNGLLV~IL~~EGy-~G~GiD~R 89 (112)
T PF07757_consen 58 KFQGFVDLGCGNGLLVYILNSEGY-PGWGIDAR 89 (112)
T ss_pred CCCceEEccCCchHHHHHHHhCCC-Cccccccc
Confidence 345789999999999999999998 57888864
|
; GO: 0008168 methyltransferase activity |
| >PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins | Back alignment and domain information |
|---|
Probab=93.20 E-value=0.86 Score=41.66 Aligned_cols=124 Identities=19% Similarity=0.263 Sum_probs=70.6
Q ss_pred ChHhHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHH---c-C--CCeEEEEech----------------------
Q 016351 59 DRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQ---A-G--ARKVYAVEAT---------------------- 110 (391)
Q Consensus 59 d~~r~~~~~~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~---~-g--~~~V~avD~s---------------------- 110 (391)
...|...+..++...+...-...|+++||-.|..++.++. . + .+++++.|.=
T Consensus 55 g~~Rl~~L~~~~~~v~~~~vpGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~ 134 (248)
T PF05711_consen 55 GRERLDNLYQAVEQVLAEDVPGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEY 134 (248)
T ss_dssp HHHHHHHHHHHHHHCCHTTS-SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGC
T ss_pred CHHHHHHHHHHHHHHHhcCCCeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhc
Confidence 4567777788887766443346799999999976655432 1 2 3468887620
Q ss_pred -H----HHHHHHHHHHHcCC-CCcEEEEEcccccCCC--C-CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEE
Q 016351 111 -K----MSDHARTLVKANNL-QDVVEVIEGSVEDIVL--P-EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMY 181 (391)
Q Consensus 111 -~----~~~~a~~~~~~~~~-~~~v~~i~~d~~~~~~--~-~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii 181 (391)
. .++..++++...++ .++++++.|.+.+.-. + +++-++..+. . ..+ .....|..++..|.|||++|
T Consensus 135 ~~~~~~s~e~V~~n~~~~gl~~~~v~~vkG~F~dTLp~~p~~~IAll~lD~-D---lYe-sT~~aLe~lyprl~~GGiIi 209 (248)
T PF05711_consen 135 NGYLAVSLEEVRENFARYGLLDDNVRFVKGWFPDTLPDAPIERIALLHLDC-D---LYE-STKDALEFLYPRLSPGGIII 209 (248)
T ss_dssp CHHCTHHHHHHHHCCCCTTTSSTTEEEEES-HHHHCCC-TT--EEEEEE-------SHH-HHHHHHHHHGGGEEEEEEEE
T ss_pred ccccccCHHHHHHHHHHcCCCcccEEEECCcchhhhccCCCccEEEEEEec-c---chH-HHHHHHHHHHhhcCCCeEEE
Confidence 0 12333344444443 4579999999877422 1 4444444332 1 112 24456888889999999999
Q ss_pred ccccee
Q 016351 182 PSHARM 187 (391)
Q Consensus 182 ~~~~~~ 187 (391)
+..+..
T Consensus 210 ~DDY~~ 215 (248)
T PF05711_consen 210 FDDYGH 215 (248)
T ss_dssp ESSTTT
T ss_pred EeCCCC
Confidence 887655
|
TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A. |
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=92.88 E-value=0.49 Score=42.75 Aligned_cols=46 Identities=22% Similarity=0.247 Sum_probs=40.2
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHc
Q 016351 77 FQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKAN 123 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~ 123 (391)
.++..|||--||+|.-+.++.+.|- +.+|+|++ ...+.|.++++..
T Consensus 162 ~~g~~vlDpf~Gsgtt~~aa~~~~r-~~~g~e~~~~y~~~~~~r~~~~ 208 (227)
T PRK13699 162 HPNAIVLDPFAGSGSTCVAALQSGR-RYIGIELLEQYHRAGQQRLAAV 208 (227)
T ss_pred CCCCEEEeCCCCCCHHHHHHHHcCC-CEEEEecCHHHHHHHHHHHHHH
Confidence 5788999999999999999888877 69999999 8888888887653
|
|
| >TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family | Back alignment and domain information |
|---|
Probab=92.84 E-value=0.9 Score=41.97 Aligned_cols=124 Identities=11% Similarity=0.095 Sum_probs=79.8
Q ss_pred hHhHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEechHHHHHHHHHHHHcCC--CCcEEEEEcccc
Q 016351 60 RVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEATKMSDHARTLVKANNL--QDVVEVIEGSVE 137 (391)
Q Consensus 60 ~~r~~~~~~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s~~~~~a~~~~~~~~~--~~~v~~i~~d~~ 137 (391)
..|...+.+.+.+.+... ...|+.||||-=.....+......+++=+|..++++.-++.++..+. ..+.+++..|+.
T Consensus 64 ~~Rtr~~D~~i~~~~~~g-~~qvV~LGaGlDTr~~Rl~~~~~~~~~EvD~P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~ 142 (260)
T TIGR00027 64 AVRTRFFDDFLLAAVAAG-IRQVVILGAGLDTRAYRLPWPDGTRVFEVDQPAVLAFKEKVLAELGAEPPAHRRAVPVDLR 142 (260)
T ss_pred HHHHHHHHHHHHHHHhcC-CcEEEEeCCccccHHHhcCCCCCCeEEECCChHHHHHHHHHHHHcCCCCCCceEEeccCch
Confidence 456666666666655432 35699999997655544432211245555555677777777776543 356889999986
Q ss_pred cC-----C---C-CCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcccc
Q 016351 138 DI-----V---L-PEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 138 ~~-----~---~-~~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~~ 185 (391)
+- . + +...-++++|.+.+++..+ ....++..+.+...||+.+++...
T Consensus 143 ~~w~~~L~~~gfd~~~ptl~i~EGvl~YL~~~-~v~~ll~~i~~~~~~gs~l~~d~~ 198 (260)
T TIGR00027 143 QDWPAALAAAGFDPTAPTAWLWEGLLMYLTEE-AVDALLAFIAELSAPGSRLAFDYV 198 (260)
T ss_pred hhHHHHHHhCCCCCCCCeeeeecchhhcCCHH-HHHHHHHHHHHhCCCCcEEEEEec
Confidence 21 0 1 1345678888887776655 577889988888789988887643
|
This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants. |
| >PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species | Back alignment and domain information |
|---|
Probab=92.80 E-value=0.067 Score=44.93 Aligned_cols=96 Identities=21% Similarity=0.248 Sum_probs=56.7
Q ss_pred CCEEEEECCcccHHHHHHHHcCCCeEEEEechH--HHHHHHHHHHHcCCCCcEEEEEccccc-C-CCCCcccEEEE-ccc
Q 016351 79 GKTVLDVGTGSGILAIWSAQAGARKVYAVEATK--MSDHARTLVKANNLQDVVEVIEGSVED-I-VLPEKVDVIIS-EWM 153 (391)
Q Consensus 79 ~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s~--~~~~a~~~~~~~~~~~~v~~i~~d~~~-~-~~~~~~D~Ivs-e~~ 153 (391)
+++++-+|...=..-.++.++|+++|..||.++ .-+..+.++ ..+...|+.. + ...++||.+.| ..+
T Consensus 2 ~~~g~V~GS~~PwvEv~aL~~GA~~iltveyn~L~i~~~~~dr~--------ssi~p~df~~~~~~y~~~fD~~as~~si 73 (177)
T PF03269_consen 2 GKSGLVVGSMQPWVEVMALQHGAAKILTVEYNKLEIQEEFRDRL--------SSILPVDFAKNWQKYAGSFDFAASFSSI 73 (177)
T ss_pred CceEEEEecCCchhhHHHHHcCCceEEEEeecccccCccccccc--------ccccHHHHHHHHHHhhccchhhheechh
Confidence 578899999987777778888999999999873 111111111 1122222211 1 23478998877 222
Q ss_pred cccc--------cCcchHHHHHHHHhccccCCeEEEcc
Q 016351 154 GYFL--------LRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 154 ~~~~--------~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
.+.. ...+++.. +..++++|||||.+++.
T Consensus 74 Eh~GLGRYGDPidp~Gdl~~-m~~i~~vLK~GG~L~l~ 110 (177)
T PF03269_consen 74 EHFGLGRYGDPIDPIGDLRA-MAKIKCVLKPGGLLFLG 110 (177)
T ss_pred ccccccccCCCCCccccHHH-HHHHHHhhccCCeEEEE
Confidence 2221 12234444 56678999999998744
|
|
| >PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases | Back alignment and domain information |
|---|
Probab=92.57 E-value=0.33 Score=43.29 Aligned_cols=42 Identities=26% Similarity=0.364 Sum_probs=33.5
Q ss_pred CCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHH
Q 016351 76 HFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHART 118 (391)
Q Consensus 76 ~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~ 118 (391)
..++..|||--||+|.-+.++.+.|- +.+|+|++ ..++.|++
T Consensus 189 t~~gdiVlDpF~GSGTT~~aa~~l~R-~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 189 TNPGDIVLDPFAGSGTTAVAAEELGR-RYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp S-TT-EEEETT-TTTHHHHHHHHTT--EEEEEESSHHHHHHHHH
T ss_pred hccceeeehhhhccChHHHHHHHcCC-eEEEEeCCHHHHHHhcC
Confidence 35789999999999999999998877 79999999 78887764
|
In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B .... |
| >TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit | Back alignment and domain information |
|---|
Probab=92.52 E-value=0.34 Score=48.97 Aligned_cols=92 Identities=22% Similarity=0.306 Sum_probs=56.3
Q ss_pred CCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEccccc----------------
Q 016351 78 QGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVED---------------- 138 (391)
Q Consensus 78 ~~~~VLDlGcGt-G~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~---------------- 138 (391)
++.+||-+|+|. |..+..+++. |+ .|+++|.+ ..++.+++ .|. +++.-|..+
T Consensus 163 p~akVlViGaG~iGl~Aa~~ak~lGA-~V~v~d~~~~rle~a~~----lGa----~~v~v~~~e~g~~~~gYa~~~s~~~ 233 (511)
T TIGR00561 163 PPAKVLVIGAGVAGLAAIGAANSLGA-IVRAFDTRPEVKEQVQS----MGA----EFLELDFKEEGGSGDGYAKVMSEEF 233 (511)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH----cCC----eEEeccccccccccccceeecCHHH
Confidence 568999999997 6777776665 77 69999999 65554443 332 332222211
Q ss_pred -------CC-CCCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEE
Q 016351 139 -------IV-LPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMY 181 (391)
Q Consensus 139 -------~~-~~~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii 181 (391)
+. .-..+|+|++-.+ .........+.++..+.+|||++++
T Consensus 234 ~~~~~~~~~e~~~~~DIVI~Tal---ipG~~aP~Lit~emv~~MKpGsvIV 281 (511)
T TIGR00561 234 IAAEMELFAAQAKEVDIIITTAL---IPGKPAPKLITEEMVDSMKAGSVIV 281 (511)
T ss_pred HHHHHHHHHHHhCCCCEEEECcc---cCCCCCCeeehHHHHhhCCCCCEEE
Confidence 00 0156999987432 1122122234566678899999877
|
In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff. |
| >TIGR00675 dcm DNA-methyltransferase (dcm) | Back alignment and domain information |
|---|
Probab=92.33 E-value=0.16 Score=48.43 Aligned_cols=64 Identities=20% Similarity=0.278 Sum_probs=48.2
Q ss_pred EEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC--CcccEEEEcc
Q 016351 82 VLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP--EKVDVIISEW 152 (391)
Q Consensus 82 VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~--~~~D~Ivse~ 152 (391)
|+|+-||.|.+++-+.++|...+.++|++ ..++..+.+.. + .++.+|+.++... ..+|+++..+
T Consensus 1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~~a~~ty~~N~~-----~--~~~~~Di~~~~~~~~~~~dvl~gg~ 67 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDKYAQKTYEANFG-----N--KVPFGDITKISPSDIPDFDILLGGF 67 (315)
T ss_pred CEEEecCccHHHHHHHHcCCeEEEEEeCCHHHHHHHHHhCC-----C--CCCccChhhhhhhhCCCcCEEEecC
Confidence 68999999999999999998778899999 66555555432 2 4456788887532 4689998744
|
All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=92.25 E-value=0.39 Score=44.68 Aligned_cols=95 Identities=24% Similarity=0.266 Sum_probs=54.8
Q ss_pred CCCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEE--cccccCCCCCcccEEEE
Q 016351 76 HFQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIE--GSVEDIVLPEKVDVIIS 150 (391)
Q Consensus 76 ~~~~~~VLDlGcGt-G~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~--~d~~~~~~~~~~D~Ivs 150 (391)
..++.+||-+|+|. |.++..+|++ |+++|+++|.+ .-++.+++ .|....+..-. ..+.++.....+|+++-
T Consensus 118 ~~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~----~Ga~~~i~~~~~~~~~~~~~~~~g~d~vid 193 (280)
T TIGR03366 118 DLKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALS----FGATALAEPEVLAERQGGLQNGRGVDVALE 193 (280)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----cCCcEecCchhhHHHHHHHhCCCCCCEEEE
Confidence 34778999999875 6666667765 77669999988 55555544 34321111100 00111112246898884
Q ss_pred ccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 151 EWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 151 e~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
..+. ...+....+.|+++|.++..
T Consensus 194 -~~G~--------~~~~~~~~~~l~~~G~iv~~ 217 (280)
T TIGR03366 194 -FSGA--------TAAVRACLESLDVGGTAVLA 217 (280)
T ss_pred -CCCC--------hHHHHHHHHHhcCCCEEEEe
Confidence 1111 12355556789999998744
|
This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds. |
| >cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase) | Back alignment and domain information |
|---|
Probab=92.20 E-value=0.32 Score=47.31 Aligned_cols=95 Identities=22% Similarity=0.226 Sum_probs=55.2
Q ss_pred CCCCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEccc----ccCCCCCcccE
Q 016351 75 HHFQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSV----EDIVLPEKVDV 147 (391)
Q Consensus 75 ~~~~~~~VLDlGcGt-G~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~----~~~~~~~~~D~ 147 (391)
...++.+||-.|+|. |.++..+|++ |+++|+++|.+ ..++.+++ .|....+.....+. .++. ++.+|+
T Consensus 188 ~i~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~----~Ga~~~i~~~~~~~~~~i~~~~-~~g~d~ 262 (371)
T cd08281 188 GVRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARE----LGATATVNAGDPNAVEQVRELT-GGGVDY 262 (371)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHH----cCCceEeCCCchhHHHHHHHHh-CCCCCE
Confidence 345678899999875 6666666765 77679999988 66666543 34321111111111 1111 236898
Q ss_pred EEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 148 IISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 148 Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
|+-- .+. ...+....+.|+++|.++..
T Consensus 263 vid~-~G~--------~~~~~~~~~~l~~~G~iv~~ 289 (371)
T cd08281 263 AFEM-AGS--------VPALETAYEITRRGGTTVTA 289 (371)
T ss_pred EEEC-CCC--------hHHHHHHHHHHhcCCEEEEE
Confidence 8841 111 12344555789999998743
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd |
| >TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=91.80 E-value=0.35 Score=46.73 Aligned_cols=96 Identities=22% Similarity=0.153 Sum_probs=55.8
Q ss_pred CCCCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccc----cCCCCCcccE
Q 016351 75 HHFQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVE----DIVLPEKVDV 147 (391)
Q Consensus 75 ~~~~~~~VLDlGcGt-G~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~----~~~~~~~~D~ 147 (391)
...++.+||-.|+|. |.++..+|++ |+.+|+++|.+ ...+.+++ .|....+.....+.. +......+|+
T Consensus 173 ~~~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~----~Ga~~~i~~~~~~~~~~i~~~~~~~g~d~ 248 (358)
T TIGR03451 173 GVKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWARE----FGATHTVNSSGTDPVEAIRALTGGFGADV 248 (358)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----cCCceEEcCCCcCHHHHHHHHhCCCCCCE
Confidence 345678999999865 6666777776 77679999988 66666643 343211111111111 1111246898
Q ss_pred EEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 148 IISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 148 Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
|+- ..+. ...+....+.|+++|+++..
T Consensus 249 vid-~~g~--------~~~~~~~~~~~~~~G~iv~~ 275 (358)
T TIGR03451 249 VID-AVGR--------PETYKQAFYARDLAGTVVLV 275 (358)
T ss_pred EEE-CCCC--------HHHHHHHHHHhccCCEEEEE
Confidence 884 2221 12344455789999998754
|
Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione. |
| >PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed | Back alignment and domain information |
|---|
Probab=91.76 E-value=0.64 Score=49.08 Aligned_cols=104 Identities=13% Similarity=0.130 Sum_probs=64.2
Q ss_pred CCCEEEEECCcccHHHHHHHHc-------CC------CeEEEEechH----HH-----------HHHHHHHHH-----cC
Q 016351 78 QGKTVLDVGTGSGILAIWSAQA-------GA------RKVYAVEATK----MS-----------DHARTLVKA-----NN 124 (391)
Q Consensus 78 ~~~~VLDlGcGtG~l~~~~a~~-------g~------~~V~avD~s~----~~-----------~~a~~~~~~-----~~ 124 (391)
+.-+|||+|=|+|...+.+.+. .. -+++++|..+ -+ ..+++..+. .|
T Consensus 57 ~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 136 (662)
T PRK01747 57 RRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPG 136 (662)
T ss_pred CcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCC
Confidence 3468999999999876555422 11 1789999631 11 112222211 12
Q ss_pred C------CC--cEEEEEcccccCC--CCCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEE
Q 016351 125 L------QD--VVEVIEGSVEDIV--LPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMY 181 (391)
Q Consensus 125 ~------~~--~v~~i~~d~~~~~--~~~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii 181 (391)
+ .+ .++++.+|+++.- +...+|+++.+.+...-..+---..++..+.++++|||.+.
T Consensus 137 ~~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~ 203 (662)
T PRK01747 137 CHRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLA 203 (662)
T ss_pred ceEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEE
Confidence 2 11 3567778887642 23579999988765433222223578999999999999887
|
|
| >TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase | Back alignment and domain information |
|---|
Probab=91.69 E-value=0.58 Score=44.24 Aligned_cols=84 Identities=24% Similarity=0.171 Sum_probs=52.3
Q ss_pred CCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEcccc
Q 016351 78 QGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMG 154 (391)
Q Consensus 78 ~~~~VLDlGcGt-G~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~~D~Ivse~~~ 154 (391)
++.+||-+|||. |.++..+|++ |++.|+++|.+ ..++.|.+. . ++ |..+. ....+|+|+- ..+
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~----~------~i--~~~~~-~~~g~Dvvid-~~G 209 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGY----E------VL--DPEKD-PRRDYRAIYD-ASG 209 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhc----c------cc--Chhhc-cCCCCCEEEE-CCC
Confidence 467799999886 7777777775 88778888887 555544421 1 11 11110 1246898884 222
Q ss_pred ccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 155 YFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 155 ~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
. ...++...++|+++|+++..
T Consensus 210 ~--------~~~~~~~~~~l~~~G~iv~~ 230 (308)
T TIGR01202 210 D--------PSLIDTLVRRLAKGGEIVLA 230 (308)
T ss_pred C--------HHHHHHHHHhhhcCcEEEEE
Confidence 1 12455666789999998843
|
|
| >KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=91.53 E-value=1.6 Score=41.83 Aligned_cols=112 Identities=18% Similarity=0.039 Sum_probs=68.0
Q ss_pred CCCCCCEEEEECCcccHHHHHHHHcC-CC----eEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC--------
Q 016351 75 HHFQGKTVLDVGTGSGILAIWSAQAG-AR----KVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV-------- 140 (391)
Q Consensus 75 ~~~~~~~VLDlGcGtG~l~~~~a~~g-~~----~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~-------- 140 (391)
...++.+|||+.+-.|.=+..+.++. .. .|++=|.+ .-+...+.......-. .+.+...|+..++
T Consensus 152 ~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~-~~~v~~~~~~~~p~~~~~~~~ 230 (375)
T KOG2198|consen 152 GVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSP-NLLVTNHDASLFPNIYLKDGN 230 (375)
T ss_pred ccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCc-ceeeecccceeccccccccCc
Confidence 34578999999999998776666652 22 69998988 5455555444433322 2444444433221
Q ss_pred -CC-CcccEEEEcccccc--ccCc------------------chHHHHHHHHhccccCCeEEEccccee
Q 016351 141 -LP-EKVDVIISEWMGYF--LLRE------------------SMFDSVICARDRWLKPTGVMYPSHARM 187 (391)
Q Consensus 141 -~~-~~~D~Ivse~~~~~--~~~e------------------~~l~~~l~~~~~~L~~gG~ii~~~~~~ 187 (391)
.. ..||-|+|+..... .... ...-.++....++||+||.++-+.+++
T Consensus 231 ~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSL 299 (375)
T KOG2198|consen 231 DKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSL 299 (375)
T ss_pred hhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCC
Confidence 11 57999999764221 1100 012346666789999999999776653
|
|
| >COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.47 E-value=0.7 Score=43.21 Aligned_cols=96 Identities=20% Similarity=0.185 Sum_probs=66.2
Q ss_pred CCCEEEEECCcc-cHHHHHHHH-cCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-CcccEEEEccc
Q 016351 78 QGKTVLDVGTGS-GILAIWSAQ-AGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIISEWM 153 (391)
Q Consensus 78 ~~~~VLDlGcGt-G~l~~~~a~-~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~-~~~D~Ivse~~ 153 (391)
++.+|.-||.|. |..+..+|- .|+ .|+.+|.| +-+......+. .+++.+-....++... .+.|++|.-.+
T Consensus 167 ~~~kv~iiGGGvvgtnaAkiA~glgA-~Vtild~n~~rl~~ldd~f~-----~rv~~~~st~~~iee~v~~aDlvIgaVL 240 (371)
T COG0686 167 LPAKVVVLGGGVVGTNAAKIAIGLGA-DVTILDLNIDRLRQLDDLFG-----GRVHTLYSTPSNIEEAVKKADLVIGAVL 240 (371)
T ss_pred CCccEEEECCccccchHHHHHhccCC-eeEEEecCHHHHhhhhHhhC-----ceeEEEEcCHHHHHHHhhhccEEEEEEE
Confidence 346788898886 655544443 467 79999999 76655544432 4488888877777544 78999997432
Q ss_pred cccccCcchHHHHHHHHhccccCCeEEEc
Q 016351 154 GYFLLRESMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 154 ~~~~~~e~~l~~~l~~~~~~L~~gG~ii~ 182 (391)
......+..+.+++.+.+|||.+++-
T Consensus 241 ---IpgakaPkLvt~e~vk~MkpGsVivD 266 (371)
T COG0686 241 ---IPGAKAPKLVTREMVKQMKPGSVIVD 266 (371)
T ss_pred ---ecCCCCceehhHHHHHhcCCCcEEEE
Confidence 34444556667777888999998873
|
|
| >cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like | Back alignment and domain information |
|---|
Probab=91.32 E-value=0.53 Score=44.98 Aligned_cols=95 Identities=23% Similarity=0.242 Sum_probs=54.1
Q ss_pred CCCCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcc---cccCCCCCcccEE
Q 016351 75 HHFQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGS---VEDIVLPEKVDVI 148 (391)
Q Consensus 75 ~~~~~~~VLDlGcGt-G~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d---~~~~~~~~~~D~I 148 (391)
...++.+||-+|+|. |.++..++++ |+++|++++.+ +..+.+++ .|....+.....+ +.++.....+|+|
T Consensus 160 ~~~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~----~ga~~~i~~~~~~~~~~~~~~~~~~~d~v 235 (339)
T cd08239 160 GVSGRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKA----LGADFVINSGQDDVQEIRELTSGAGADVA 235 (339)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----hCCCEEEcCCcchHHHHHHHhCCCCCCEE
Confidence 345688999998865 5666666665 77559999988 65555543 3432111111111 1111112469999
Q ss_pred EEccccccccCcchHHHHHHHHhccccCCeEEEc
Q 016351 149 ISEWMGYFLLRESMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 149 vse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~ 182 (391)
+--. + . ...+....+.|+++|.++.
T Consensus 236 id~~-g----~----~~~~~~~~~~l~~~G~~v~ 260 (339)
T cd08239 236 IECS-G----N----TAARRLALEAVRPWGRLVL 260 (339)
T ss_pred EECC-C----C----HHHHHHHHHHhhcCCEEEE
Confidence 8421 1 1 1234445577999998874
|
MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at |
| >cd08230 glucose_DH Glucose dehydrogenase | Back alignment and domain information |
|---|
Probab=90.97 E-value=0.75 Score=44.37 Aligned_cols=92 Identities=23% Similarity=0.321 Sum_probs=53.1
Q ss_pred CCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEec---h-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEE
Q 016351 77 FQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEA---T-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIIS 150 (391)
Q Consensus 77 ~~~~~VLDlGcGt-G~l~~~~a~~-g~~~V~avD~---s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~~D~Ivs 150 (391)
.++.+||-+|+|. |.++..+|++ |+ +|++++. + .-.+.+ ++.|... +.....+..+......+|+|+-
T Consensus 171 ~~g~~vlI~G~G~vG~~a~q~ak~~G~-~vi~~~~~~~~~~~~~~~----~~~Ga~~-v~~~~~~~~~~~~~~~~d~vid 244 (355)
T cd08230 171 WNPRRALVLGAGPIGLLAALLLRLRGF-EVYVLNRRDPPDPKADIV----EELGATY-VNSSKTPVAEVKLVGEFDLIIE 244 (355)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEecCCCCHHHHHHH----HHcCCEE-ecCCccchhhhhhcCCCCEEEE
Confidence 4678999999876 7777777776 77 7999986 4 333433 3444321 1111111111111246898885
Q ss_pred ccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 151 EWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 151 e~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
- .+ . ...+....+.|+++|.++..
T Consensus 245 ~-~g----~----~~~~~~~~~~l~~~G~~v~~ 268 (355)
T cd08230 245 A-TG----V----PPLAFEALPALAPNGVVILF 268 (355)
T ss_pred C-cC----C----HHHHHHHHHHccCCcEEEEE
Confidence 2 11 1 12455667889999988743
|
Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai |
| >cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=90.93 E-value=1.1 Score=43.08 Aligned_cols=90 Identities=16% Similarity=0.093 Sum_probs=53.9
Q ss_pred CCCCEEEEECCcc-cHHHHHHHH--cCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEcc
Q 016351 77 FQGKTVLDVGTGS-GILAIWSAQ--AGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEW 152 (391)
Q Consensus 77 ~~~~~VLDlGcGt-G~l~~~~a~--~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~~D~Ivse~ 152 (391)
.++.+||-+|||. |.++..+++ .|+.+|+++|.+ .-++.|++ .+. ...+ .+ +.....+|+|+- .
T Consensus 162 ~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~----~~~---~~~~-~~---~~~~~g~d~viD-~ 229 (341)
T cd08237 162 KDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF----ADE---TYLI-DD---IPEDLAVDHAFE-C 229 (341)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh----cCc---eeeh-hh---hhhccCCcEEEE-C
Confidence 4678999999986 666666555 356689999998 66666653 111 1111 11 111124898884 2
Q ss_pred ccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 153 MGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 153 ~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
.+. . ..+..+....++|+++|+++..
T Consensus 230 ~G~----~-~~~~~~~~~~~~l~~~G~iv~~ 255 (341)
T cd08237 230 VGG----R-GSQSAINQIIDYIRPQGTIGLM 255 (341)
T ss_pred CCC----C-ccHHHHHHHHHhCcCCcEEEEE
Confidence 221 0 1123456667889999998743
|
NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase ( |
| >PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function | Back alignment and domain information |
|---|
Probab=90.64 E-value=0.86 Score=41.84 Aligned_cols=68 Identities=16% Similarity=0.265 Sum_probs=42.7
Q ss_pred CCEEEEECCcccHHHHHHHHc-C--------CCeEEEEech-HHHHHHHHHHHHc-----CCCCcEEEEEcccccCCCCC
Q 016351 79 GKTVLDVGTGSGILAIWSAQA-G--------ARKVYAVEAT-KMSDHARTLVKAN-----NLQDVVEVIEGSVEDIVLPE 143 (391)
Q Consensus 79 ~~~VLDlGcGtG~l~~~~a~~-g--------~~~V~avD~s-~~~~~a~~~~~~~-----~~~~~v~~i~~d~~~~~~~~ 143 (391)
..+|+|+|+|+|.++.-+++. . ..+++.||.| .+.+..++.+... ....+|.++ .+..+.+
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~~~~~~~~~~~~i~w~-~~l~~~p--- 94 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSEHAPKDTEFGDPIRWL-DDLEEVP--- 94 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCCH---STTTCGCEEEE-SSGGCS----
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhhhcccccccCCccchh-hhhhccc---
Confidence 368999999999998887765 1 1379999999 7777666666542 234457773 3444432
Q ss_pred cccEEEE
Q 016351 144 KVDVIIS 150 (391)
Q Consensus 144 ~~D~Ivs 150 (391)
..-+|++
T Consensus 95 ~~~~iia 101 (252)
T PF02636_consen 95 FPGFIIA 101 (252)
T ss_dssp CCEEEEE
T ss_pred CCEEEEE
Confidence 3455666
|
; PDB: 4F3N_A 1ZKD_B. |
| >PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length | Back alignment and domain information |
|---|
Probab=90.49 E-value=3.9 Score=36.26 Aligned_cols=99 Identities=19% Similarity=0.348 Sum_probs=60.2
Q ss_pred CCCEEEEECCccc----HHHHHHH-Hc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccc-cCCCC-CcccEE
Q 016351 78 QGKTVLDVGTGSG----ILAIWSA-QA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVE-DIVLP-EKVDVI 148 (391)
Q Consensus 78 ~~~~VLDlGcGtG----~l~~~~a-~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~-~~~~~-~~~D~I 148 (391)
.-+.++++.|+-| .+++.+| ++ |. +++.|-.. ..+...++.+...++.+.++|+.++.. ++... ..+|++
T Consensus 41 nAkliVe~~s~g~~~~ttiaLaaAAr~TgG-R~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~~~e~~~~~~~~iDF~ 119 (218)
T PF07279_consen 41 NAKLIVEAWSSGGAISTTIALAAAARQTGG-RHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGEAPEEVMPGLKGIDFV 119 (218)
T ss_pred cceEEEEEecCCCchHhHHHHHHHHHhcCC-eEEEEcCChhhHHHHHHHHhhccccccceEEecCCHHHHHhhccCCCEE
Confidence 4477888865533 3344433 33 44 67777777 666677777777888887899998853 33222 789999
Q ss_pred EEccccccccCcchHHHHHHHHhccccCCeEEEccc
Q 016351 149 ISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 149 vse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~ 184 (391)
+.+. - .++....+|+.+. +.|.|-++...
T Consensus 120 vVDc---~--~~d~~~~vl~~~~--~~~~GaVVV~~ 148 (218)
T PF07279_consen 120 VVDC---K--REDFAARVLRAAK--LSPRGAVVVCY 148 (218)
T ss_pred EEeC---C--chhHHHHHHHHhc--cCCCceEEEEe
Confidence 9654 1 1222225666543 55666655443
|
The function of this family is unknown. |
| >PLN02740 Alcohol dehydrogenase-like | Back alignment and domain information |
|---|
Probab=90.25 E-value=1.9 Score=42.07 Aligned_cols=44 Identities=25% Similarity=0.381 Sum_probs=32.7
Q ss_pred CCCCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHH
Q 016351 75 HHFQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHART 118 (391)
Q Consensus 75 ~~~~~~~VLDlGcGt-G~l~~~~a~~-g~~~V~avD~s-~~~~~a~~ 118 (391)
...++.+||-+|+|. |.++..+|++ |+++|+++|.+ ..++.|++
T Consensus 195 ~~~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~ 241 (381)
T PLN02740 195 NVQAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKE 241 (381)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHH
Confidence 445678999999875 6666666765 77679999998 66666644
|
|
| >PRK10309 galactitol-1-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.08 E-value=0.68 Score=44.44 Aligned_cols=96 Identities=24% Similarity=0.278 Sum_probs=53.7
Q ss_pred CCCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccc---cCCCCCcccEEE
Q 016351 76 HFQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVE---DIVLPEKVDVII 149 (391)
Q Consensus 76 ~~~~~~VLDlGcGt-G~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~---~~~~~~~~D~Iv 149 (391)
..++.+||-.|+|. |.++..+|++ |++.|++++.+ +..+.+++ .|....+.....+.. .+.....+|.++
T Consensus 158 ~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~----~Ga~~~i~~~~~~~~~~~~~~~~~~~d~~v 233 (347)
T PRK10309 158 GCEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKS----LGAMQTFNSREMSAPQIQSVLRELRFDQLI 233 (347)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH----cCCceEecCcccCHHHHHHHhcCCCCCeEE
Confidence 45678999999876 6666666665 77668999988 65555533 343211111111111 111124577444
Q ss_pred EccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 150 SEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 150 se~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
.|..+. ...+....+.|+++|.++..
T Consensus 234 ~d~~G~--------~~~~~~~~~~l~~~G~iv~~ 259 (347)
T PRK10309 234 LETAGV--------PQTVELAIEIAGPRAQLALV 259 (347)
T ss_pred EECCCC--------HHHHHHHHHHhhcCCEEEEE
Confidence 333321 12455566788999998744
|
|
| >PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=90.08 E-value=1.7 Score=37.72 Aligned_cols=101 Identities=17% Similarity=0.265 Sum_probs=61.9
Q ss_pred EEEEECCcc-c-HHHHHHHHcCCCeEEEEech-HHHHHHHHHHHH--------cCCC--------CcEEEEEcccccCCC
Q 016351 81 TVLDVGTGS-G-ILAIWSAQAGARKVYAVEAT-KMSDHARTLVKA--------NNLQ--------DVVEVIEGSVEDIVL 141 (391)
Q Consensus 81 ~VLDlGcGt-G-~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~--------~~~~--------~~v~~i~~d~~~~~~ 141 (391)
+|.-||+|+ | .++..++.+|. +|+.+|.+ ..++.+++.++. ..+. .++++ ..|+.++
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~-~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~-~~dl~~~-- 76 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGY-EVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISF-TTDLEEA-- 76 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTS-EEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEE-ESSGGGG--
T ss_pred CEEEEcCCHHHHHHHHHHHhCCC-cEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhccc-ccCHHHH--
Confidence 467899987 4 46777788888 79999999 888777776654 1111 23543 3455444
Q ss_pred CCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcccceeEEe
Q 016351 142 PEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHARMWVA 190 (391)
Q Consensus 142 ~~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~~~~~~~ 190 (391)
...|+|+=.. ......-..++..+.+.+.|+.++.-+..++-..
T Consensus 77 -~~adlViEai----~E~l~~K~~~~~~l~~~~~~~~ilasnTSsl~i~ 120 (180)
T PF02737_consen 77 -VDADLVIEAI----PEDLELKQELFAELDEICPPDTILASNTSSLSIS 120 (180)
T ss_dssp -CTESEEEE-S-----SSHHHHHHHHHHHHCCS-TTSEEEE--SSS-HH
T ss_pred -hhhheehhhc----cccHHHHHHHHHHHHHHhCCCceEEecCCCCCHH
Confidence 3689888422 2222345678999999999999887665555443
|
1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B .... |
| >PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3) | Back alignment and domain information |
|---|
Probab=89.89 E-value=0.095 Score=41.16 Aligned_cols=41 Identities=15% Similarity=0.169 Sum_probs=27.2
Q ss_pred cccEEEEcccc---ccccCcchHHHHHHHHhccccCCeEEEccc
Q 016351 144 KVDVIISEWMG---YFLLRESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 144 ~~D~Ivse~~~---~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~ 184 (391)
+||+|+|=.+. +.-.+..-+..+++.+.++|+|||.+|...
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEp 44 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEP 44 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE-
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeC
Confidence 58999993221 111122347789999999999999999553
|
Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B. |
| >COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=89.89 E-value=0.57 Score=44.89 Aligned_cols=67 Identities=24% Similarity=0.272 Sum_probs=51.2
Q ss_pred CEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC---C-cccEEEEcc
Q 016351 80 KTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP---E-KVDVIISEW 152 (391)
Q Consensus 80 ~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~---~-~~D~Ivse~ 152 (391)
.+++|+-||.|.+.+-+..+|..-+.++|++ ..++.-+.+... ..++..|+.++... . .+|+|+.-+
T Consensus 4 ~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~~ty~~n~~~------~~~~~~di~~~~~~~~~~~~~DvligGp 75 (328)
T COG0270 4 MKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVATYKANFPH------GDIILGDIKELDGEALRKSDVDVLIGGP 75 (328)
T ss_pred ceEEeeccCCchHHHHHHhcCCeEEEEEecCHHHHHHHHHhCCC------CceeechHhhcChhhccccCCCEEEeCC
Confidence 5799999999999999999998889999999 555555544432 46677788776433 2 789999744
|
|
| >cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy) | Back alignment and domain information |
|---|
Probab=89.74 E-value=2.4 Score=41.87 Aligned_cols=87 Identities=21% Similarity=0.254 Sum_probs=53.8
Q ss_pred CCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEccc
Q 016351 77 FQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWM 153 (391)
Q Consensus 77 ~~~~~VLDlGcGt-G~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~~D~Ivse~~ 153 (391)
.++++|+-+|+|. |.....+++. |+ +|+++|.+ .-+..|++ .|. +.+ +..+. -..+|+|+.-.
T Consensus 200 l~GktVvViG~G~IG~~va~~ak~~Ga-~ViV~d~d~~R~~~A~~----~G~----~~~--~~~e~--v~~aDVVI~at- 265 (413)
T cd00401 200 IAGKVAVVAGYGDVGKGCAQSLRGQGA-RVIVTEVDPICALQAAM----EGY----EVM--TMEEA--VKEGDIFVTTT- 265 (413)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEECChhhHHHHHh----cCC----EEc--cHHHH--HcCCCEEEECC-
Confidence 5789999999997 7666666654 88 79999998 54444443 343 222 12221 14689998621
Q ss_pred cccccCcchHHHHHHHHhccccCCeEEEccc
Q 016351 154 GYFLLRESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 154 ~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~ 184 (391)
+ ....+-....+.+++||+++...
T Consensus 266 G-------~~~~i~~~~l~~mk~GgilvnvG 289 (413)
T cd00401 266 G-------NKDIITGEHFEQMKDGAIVCNIG 289 (413)
T ss_pred C-------CHHHHHHHHHhcCCCCcEEEEeC
Confidence 1 12222233467899999887543
|
The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+. |
| >PF06460 NSP13: Coronavirus NSP13; InterPro: IPR009461 This domain covers the NSP13 region of the coronavirus polyprotein | Back alignment and domain information |
|---|
Probab=89.33 E-value=1.2 Score=40.55 Aligned_cols=111 Identities=18% Similarity=0.173 Sum_probs=56.6
Q ss_pred ChHhHHHHHHHHHh-cCCCCCCCEEEEECCcc--cHH--HHHHHHcCCC--eEEEEechHHHHHHHHHHHHcCCCCcEEE
Q 016351 59 DRVRMDAYFNSIFQ-NKHHFQGKTVLDVGTGS--GIL--AIWSAQAGAR--KVYAVEATKMSDHARTLVKANNLQDVVEV 131 (391)
Q Consensus 59 d~~r~~~~~~~i~~-~~~~~~~~~VLDlGcGt--G~l--~~~~a~~g~~--~V~avD~s~~~~~a~~~~~~~~~~~~v~~ 131 (391)
.-..+..+.+.|.. .+....+.+||.+|+|+ |.- +..+.+.-.. .++-.|+.+.+. +.-..
T Consensus 41 NV~KYtQLCqYln~~tlaVP~nMrVlHlGAgSdkGvaPGt~VLrqwlP~~ailvDnDi~d~vS------------Da~~~ 108 (299)
T PF06460_consen 41 NVAKYTQLCQYLNKTTLAVPHNMRVLHLGAGSDKGVAPGTAVLRQWLPEDAILVDNDIRDYVS------------DADQS 108 (299)
T ss_dssp HHHHHHHHHHHHTTS-----TT-EEEEES---TTSB-HHHHHHHHHS-TT-EEEEEESS--B-------------SSSEE
T ss_pred eHHHHHHHHHHhccccEeeccCcEEEEecccccCCcCCchHHHHHhCCCCcEEEecchhhhcc------------ccCCc
Confidence 34556666666644 22233468999999997 322 2333333222 455555544221 22456
Q ss_pred EEcccccCCCCCcccEEEEcccc--------ccccCcchHHHHHHHHhccccCCeEEE
Q 016351 132 IEGSVEDIVLPEKVDVIISEWMG--------YFLLRESMFDSVICARDRWLKPTGVMY 181 (391)
Q Consensus 132 i~~d~~~~~~~~~~D~Ivse~~~--------~~~~~e~~l~~~l~~~~~~L~~gG~ii 181 (391)
+.+|.+.+..+.++|+|||+.-. .....+.-...+..-++..|+-||.+.
T Consensus 109 ~~~Dc~t~~~~~k~DlIiSDmYd~~~k~~~~~n~~~~~fF~yl~~~i~~kLaLGGSva 166 (299)
T PF06460_consen 109 IVGDCRTYMPPDKFDLIISDMYDGRTKNCDGENNSKEGFFTYLCGFIKEKLALGGSVA 166 (299)
T ss_dssp EES-GGGEEESS-EEEEEE----TTS-SS-S------THHHHHHHHHHHHEEEEEEEE
T ss_pred eeccccccCCCCcccEEEEecccccccccccccCCccccHHHHHHHHHhhhhcCceEE
Confidence 77899998888999999998641 112233445666677788899999876
|
This protein has the predicted function of an mRNA cap-1 methyltransferase []. The human coronavirus 229E (HCoV-229E) replicase gene-encoded nonstructural protein 13 (nsp13) contains an N-terminal zinc-binding domain and a C-terminal superfamily 1 helicase domain []. All natural ribonucleotides and nucleotides are substrates of nsp13, with ATP, dATP, and GTP being hydrolyzed most efficiently. Using the NTPase active site, HCoV-229E nsp13 also mediates RNA 5'-triphosphatase activity, which may be involved in the capping of viral RNAs.; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0008168 methyltransferase activity, 0008233 peptidase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0016896 exoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2XYV_A 2XYR_A 3R24_A 2XYQ_A. |
| >KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=89.27 E-value=1.3 Score=42.54 Aligned_cols=40 Identities=33% Similarity=0.545 Sum_probs=31.6
Q ss_pred CCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHH
Q 016351 79 GKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTL 119 (391)
Q Consensus 79 ~~~VLDlGcGtG~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~ 119 (391)
-..|.|+|+|-|.++.+++-. |. .|+|||.| ...+.|++.
T Consensus 154 i~~vvD~GaG~G~LSr~lSl~y~l-sV~aIegsq~~~~ra~rL 195 (476)
T KOG2651|consen 154 IDQVVDVGAGQGHLSRFLSLGYGL-SVKAIEGSQRLVERAQRL 195 (476)
T ss_pred CCeeEEcCCCchHHHHHHhhccCc-eEEEeccchHHHHHHHHH
Confidence 378999999999999887754 55 79999999 555555543
|
|
| >PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional | Back alignment and domain information |
|---|
Probab=88.98 E-value=0.97 Score=43.49 Aligned_cols=74 Identities=26% Similarity=0.233 Sum_probs=47.6
Q ss_pred CCCCEEEEECCcc-c-HHHHHHHHcCCCeEEEEechH----------------------HHHHHHHHHHHcCCCCcEEEE
Q 016351 77 FQGKTVLDVGTGS-G-ILAIWSAQAGARKVYAVEATK----------------------MSDHARTLVKANNLQDVVEVI 132 (391)
Q Consensus 77 ~~~~~VLDlGcGt-G-~l~~~~a~~g~~~V~avD~s~----------------------~~~~a~~~~~~~~~~~~v~~i 132 (391)
..+++||-+|||. | .++..++++|..+++.+|.+. -++.|++.+++.+-.-+|+.+
T Consensus 22 L~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~v~i~~~ 101 (338)
T PRK12475 22 IREKHVLIVGAGALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSEVEIVPV 101 (338)
T ss_pred hcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCCcEEEEE
Confidence 3567899999995 4 467778889988999998751 234444555554333336666
Q ss_pred EcccccC---CCCCcccEEEE
Q 016351 133 EGSVEDI---VLPEKVDVIIS 150 (391)
Q Consensus 133 ~~d~~~~---~~~~~~D~Ivs 150 (391)
..++..- .+-..+|+||.
T Consensus 102 ~~~~~~~~~~~~~~~~DlVid 122 (338)
T PRK12475 102 VTDVTVEELEELVKEVDLIID 122 (338)
T ss_pred eccCCHHHHHHHhcCCCEEEE
Confidence 6554321 11267999986
|
|
| >cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=88.94 E-value=1.5 Score=39.84 Aligned_cols=92 Identities=28% Similarity=0.410 Sum_probs=52.7
Q ss_pred CCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEccccc---CCCCCcccEEEE
Q 016351 77 FQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVED---IVLPEKVDVIIS 150 (391)
Q Consensus 77 ~~~~~VLDlGcGt-G~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~---~~~~~~~D~Ivs 150 (391)
.++.+||..|+|+ |.....+++. |. +|++++.+ ...+.+++ .+....+.....+... ....+.+|+++.
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~d~vi~ 207 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAAGA-RVIVTDRSDEKLELAKE----LGADHVIDYKEEDLEEELRLTGGGGADVVID 207 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEcCCHHHHHHHHH----hCCceeccCCcCCHHHHHHHhcCCCCCEEEE
Confidence 5678999999996 6666666665 64 79999988 65555543 2221111111111100 111257999985
Q ss_pred ccccccccCcchHHHHHHHHhccccCCeEEEc
Q 016351 151 EWMGYFLLRESMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 151 e~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~ 182 (391)
.. + . ........+.|+++|.++.
T Consensus 208 ~~-~----~----~~~~~~~~~~l~~~G~~v~ 230 (271)
T cd05188 208 AV-G----G----PETLAQALRLLRPGGRIVV 230 (271)
T ss_pred CC-C----C----HHHHHHHHHhcccCCEEEE
Confidence 22 1 1 0234455677899998874
|
The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro |
| >cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members | Back alignment and domain information |
|---|
Probab=88.92 E-value=2.3 Score=40.21 Aligned_cols=94 Identities=29% Similarity=0.352 Sum_probs=55.3
Q ss_pred CCCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEccccc---CCCCCcccEEE
Q 016351 76 HFQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVED---IVLPEKVDVII 149 (391)
Q Consensus 76 ~~~~~~VLDlGcGt-G~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~---~~~~~~~D~Iv 149 (391)
..++.+||..|+|. |..+..+|+. |. +|++++.+ ...+.+++ .+....+.....+..+ ....+.+|+++
T Consensus 163 ~~~~~~vli~g~g~vG~~~~~la~~~G~-~V~~~~~s~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~D~vi 237 (338)
T cd08254 163 VKPGETVLVIGLGGLGLNAVQIAKAMGA-AVIAVDIKEEKLELAKE----LGADEVLNSLDDSPKDKKAAGLGGGFDVIF 237 (338)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHH----hCCCEEEcCCCcCHHHHHHHhcCCCceEEE
Confidence 45667888888764 7777777775 66 69999988 66666543 3432111111111100 11225789888
Q ss_pred EccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 150 SEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 150 se~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
... + ....+....+.|+++|.++..
T Consensus 238 d~~-g--------~~~~~~~~~~~l~~~G~~v~~ 262 (338)
T cd08254 238 DFV-G--------TQPTFEDAQKAVKPGGRIVVV 262 (338)
T ss_pred ECC-C--------CHHHHHHHHHHhhcCCEEEEE
Confidence 521 1 123466667899999998743
|
This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio |
| >KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=88.91 E-value=1.4 Score=39.05 Aligned_cols=94 Identities=16% Similarity=0.196 Sum_probs=63.6
Q ss_pred hhhhhhhhhhhhhHhhcCChHhHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHH
Q 016351 41 ANYFCTYAFLYHQKEMLSDRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTL 119 (391)
Q Consensus 41 ~~~~~~~~~~~~~~~ml~d~~r~~~~~~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~ 119 (391)
...|.-.+...-.+.+|.|-.-+ +.|.+......+.-|.+||.|.|.++..+..+|+.+...||++ ..+.-.+..
T Consensus 17 i~lYRLqA~K~LSQNfLMD~~lT----~KIvK~A~~~~~~~v~eIgPgpggitR~il~a~~~RL~vVE~D~RFip~LQ~L 92 (326)
T KOG0821|consen 17 IKLYRLQAAKQLSQNFLMDLRLT----DKIVKKAGNLTNAYVYEIGPGPGGITRSILNADVARLLVVEKDTRFIPGLQML 92 (326)
T ss_pred HHHHHHHHHHHHhHhHHhhhHHH----HHHHHhccccccceeEEecCCCCchhHHHHhcchhheeeeeeccccChHHHHH
Confidence 34455545444444556555433 3355555556778899999999999999999998889999988 666555554
Q ss_pred HHHcCCCCcEEEEEcccccCC
Q 016351 120 VKANNLQDVVEVIEGSVEDIV 140 (391)
Q Consensus 120 ~~~~~~~~~v~~i~~d~~~~~ 140 (391)
.++.. .+..+.++|+..+.
T Consensus 93 ~EAa~--~~~~IHh~D~LR~~ 111 (326)
T KOG0821|consen 93 SEAAP--GKLRIHHGDVLRFK 111 (326)
T ss_pred hhcCC--cceEEeccccceeh
Confidence 44433 34778888876653
|
|
| >PRK05854 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=88.87 E-value=3.3 Score=39.23 Aligned_cols=76 Identities=17% Similarity=0.225 Sum_probs=50.5
Q ss_pred CCCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC-----------
Q 016351 76 HFQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV----------- 140 (391)
Q Consensus 76 ~~~~~~VLDlGcGtG~---l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~----------- 140 (391)
..+++++|-.|+++|+ ++..+++.|+ +|+.+..+ +..+.+.+.+....-..++.++..|+.+..
T Consensus 11 ~l~gk~~lITGas~GIG~~~a~~La~~G~-~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~~~ 89 (313)
T PRK05854 11 DLSGKRAVVTGASDGLGLGLARRLAAAGA-EVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQLRA 89 (313)
T ss_pred ccCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHHH
Confidence 3567899999998875 4555667787 79988887 555544444433221234889999987752
Q ss_pred CCCcccEEEEcc
Q 016351 141 LPEKVDVIISEW 152 (391)
Q Consensus 141 ~~~~~D~Ivse~ 152 (391)
..+++|++|.+.
T Consensus 90 ~~~~iD~li~nA 101 (313)
T PRK05854 90 EGRPIHLLINNA 101 (313)
T ss_pred hCCCccEEEECC
Confidence 125689999754
|
|
| >KOG2912 consensus Predicted DNA methylase [Function unknown] | Back alignment and domain information |
|---|
Probab=88.62 E-value=1.3 Score=41.46 Aligned_cols=71 Identities=20% Similarity=0.207 Sum_probs=49.0
Q ss_pred EEEECCcccHHH-HH-HHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccC--------CCCCcccEEEE
Q 016351 82 VLDVGTGSGILA-IW-SAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDI--------VLPEKVDVIIS 150 (391)
Q Consensus 82 VLDlGcGtG~l~-~~-~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~--------~~~~~~D~Ivs 150 (391)
=+|||.|+..+- +. +.+.+. ...|+|+. .....|.+++.+|++.+.+.+++...... .....||++.|
T Consensus 106 GiDIgtgasci~~llg~rq~n~-~f~~teidd~s~~~a~snV~qn~lss~ikvV~~~~~ktll~d~~~~~~e~~ydFcMc 184 (419)
T KOG2912|consen 106 GIDIGTGASCIYPLLGARQNNW-YFLATEIDDMSFNYAKSNVEQNNLSSLIKVVKVEPQKTLLMDALKEESEIIYDFCMC 184 (419)
T ss_pred eeeccCchhhhHHhhhchhccc-eeeeeeccccccchhhccccccccccceeeEEecchhhcchhhhccCccceeeEEec
Confidence 379988875432 22 222243 58899999 66899999999999999899888743221 11245899999
Q ss_pred ccc
Q 016351 151 EWM 153 (391)
Q Consensus 151 e~~ 153 (391)
++.
T Consensus 185 NPP 187 (419)
T KOG2912|consen 185 NPP 187 (419)
T ss_pred CCc
Confidence 773
|
|
| >TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E | Back alignment and domain information |
|---|
Probab=88.11 E-value=1.5 Score=38.73 Aligned_cols=34 Identities=29% Similarity=0.473 Sum_probs=26.9
Q ss_pred CCCCEEEEECCcc-c-HHHHHHHHcCCCeEEEEech
Q 016351 77 FQGKTVLDVGTGS-G-ILAIWSAQAGARKVYAVEAT 110 (391)
Q Consensus 77 ~~~~~VLDlGcGt-G-~l~~~~a~~g~~~V~avD~s 110 (391)
..+.+||-+|||. | ..+..+++.|..+++.+|.+
T Consensus 19 l~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d 54 (202)
T TIGR02356 19 LLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD 54 (202)
T ss_pred hcCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence 3567899999995 4 35677888899899999865
|
coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli. |
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=88.00 E-value=0.58 Score=43.84 Aligned_cols=54 Identities=28% Similarity=0.292 Sum_probs=38.6
Q ss_pred EEEEEcccccC--CCC-CcccEEEEcccccccc--------------CcchHHHHHHHHhccccCCeEEEcc
Q 016351 129 VEVIEGSVEDI--VLP-EKVDVIISEWMGYFLL--------------RESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 129 v~~i~~d~~~~--~~~-~~~D~Ivse~~~~~~~--------------~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
.+++++|+.++ .++ +++|+|++++. |... +...+..++.++.++|||||.++..
T Consensus 9 ~~i~~gD~~~~l~~l~~~siDlIitDPP-Y~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~ 79 (284)
T PRK11524 9 KTIIHGDALTELKKIPSESVDLIFADPP-YNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIM 79 (284)
T ss_pred CEEEeccHHHHHHhcccCcccEEEECCC-cccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 57899999885 233 78999999874 2210 0012356888999999999998764
|
|
| >TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2 | Back alignment and domain information |
|---|
Probab=87.93 E-value=4.6 Score=35.70 Aligned_cols=33 Identities=36% Similarity=0.383 Sum_probs=26.3
Q ss_pred CCCEEEEECCcc-c-HHHHHHHHcCCCeEEEEech
Q 016351 78 QGKTVLDVGTGS-G-ILAIWSAQAGARKVYAVEAT 110 (391)
Q Consensus 78 ~~~~VLDlGcGt-G-~l~~~~a~~g~~~V~avD~s 110 (391)
+..+|+-+|||. | ..+..+++.|..+++.+|.+
T Consensus 20 ~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 20 EQATVAICGLGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 457899999996 4 46777888898888888765
|
Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter. |
| >KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=87.82 E-value=3.2 Score=38.70 Aligned_cols=73 Identities=21% Similarity=0.287 Sum_probs=55.5
Q ss_pred CCCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC-----------
Q 016351 76 HFQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV----------- 140 (391)
Q Consensus 76 ~~~~~~VLDlGcGtG~---l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~----------- 140 (391)
...++.||-=|.|+|+ +++.+|+.|+ ++...|++ +......+.++++| ++.....|+.+.+
T Consensus 35 ~v~g~~vLITGgg~GlGr~ialefa~rg~-~~vl~Din~~~~~etv~~~~~~g---~~~~y~cdis~~eei~~~a~~Vk~ 110 (300)
T KOG1201|consen 35 SVSGEIVLITGGGSGLGRLIALEFAKRGA-KLVLWDINKQGNEETVKEIRKIG---EAKAYTCDISDREEIYRLAKKVKK 110 (300)
T ss_pred hccCCEEEEeCCCchHHHHHHHHHHHhCC-eEEEEeccccchHHHHHHHHhcC---ceeEEEecCCCHHHHHHHHHHHHH
Confidence 3467899999999984 6788899998 79999999 66666666666665 4888888887752
Q ss_pred CCCcccEEEEcc
Q 016351 141 LPEKVDVIISEW 152 (391)
Q Consensus 141 ~~~~~D~Ivse~ 152 (391)
.-+.+|++|.+.
T Consensus 111 e~G~V~ILVNNA 122 (300)
T KOG1201|consen 111 EVGDVDILVNNA 122 (300)
T ss_pred hcCCceEEEecc
Confidence 126899999854
|
|
| >PRK10458 DNA cytosine methylase; Provisional | Back alignment and domain information |
|---|
Probab=87.78 E-value=2.9 Score=42.00 Aligned_cols=59 Identities=14% Similarity=0.124 Sum_probs=41.4
Q ss_pred CCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC
Q 016351 79 GKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV 140 (391)
Q Consensus 79 ~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~ 140 (391)
.-+++|+-||.|.+++.+-++|...|.++|++ .+.+.-+.+.... + ...++.+|+.++.
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~aG~~~v~a~Eid~~A~~TY~~N~~~~--p-~~~~~~~DI~~i~ 147 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAIGGQCVFTSEWNKHAVRTYKANWYCD--P-ATHRFNEDIRDIT 147 (467)
T ss_pred CceEEEeCcCccHHHHHHHHcCCEEEEEEechHHHHHHHHHHcCCC--C-ccceeccChhhCc
Confidence 35899999999999999999998788999999 5444444443110 1 1345566776654
|
|
| >PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated | Back alignment and domain information |
|---|
Probab=87.55 E-value=1.2 Score=42.76 Aligned_cols=74 Identities=31% Similarity=0.310 Sum_probs=46.4
Q ss_pred CCCCEEEEECCcc-c-HHHHHHHHcCCCeEEEEech----------------------HHHHHHHHHHHHcCCCCcEEEE
Q 016351 77 FQGKTVLDVGTGS-G-ILAIWSAQAGARKVYAVEAT----------------------KMSDHARTLVKANNLQDVVEVI 132 (391)
Q Consensus 77 ~~~~~VLDlGcGt-G-~l~~~~a~~g~~~V~avD~s----------------------~~~~~a~~~~~~~~~~~~v~~i 132 (391)
+...+||-+|||. | .++..++++|..+++.+|.+ ..++.|++.+++.+-.-+++.+
T Consensus 22 L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~inp~v~v~~~ 101 (339)
T PRK07688 22 LREKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEINSDVRVEAI 101 (339)
T ss_pred hcCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHHHCCCcEEEEE
Confidence 3557899999995 4 45677888899899999964 1233444444443322235566
Q ss_pred EcccccC---CCCCcccEEEE
Q 016351 133 EGSVEDI---VLPEKVDVIIS 150 (391)
Q Consensus 133 ~~d~~~~---~~~~~~D~Ivs 150 (391)
..++..- .+-..+|+|+.
T Consensus 102 ~~~~~~~~~~~~~~~~DlVid 122 (339)
T PRK07688 102 VQDVTAEELEELVTGVDLIID 122 (339)
T ss_pred eccCCHHHHHHHHcCCCEEEE
Confidence 5554331 11267999996
|
|
| >PLN02827 Alcohol dehydrogenase-like | Back alignment and domain information |
|---|
Probab=86.69 E-value=3.6 Score=40.12 Aligned_cols=95 Identities=16% Similarity=0.256 Sum_probs=53.7
Q ss_pred CCCCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEE--ccccc-CC--CCCccc
Q 016351 75 HHFQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIE--GSVED-IV--LPEKVD 146 (391)
Q Consensus 75 ~~~~~~~VLDlGcGt-G~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~--~d~~~-~~--~~~~~D 146 (391)
...++.+||-.|+|. |.+++.+|++ |+..|+++|.+ ...+.|+ ..|....+.... .+... +. ..+.+|
T Consensus 190 ~~~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~----~lGa~~~i~~~~~~~~~~~~v~~~~~~g~d 265 (378)
T PLN02827 190 DVSKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAK----TFGVTDFINPNDLSEPIQQVIKRMTGGGAD 265 (378)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHH----HcCCcEEEcccccchHHHHHHHHHhCCCCC
Confidence 345688999999875 6666666665 87679999987 6555553 345421111111 01111 10 123689
Q ss_pred EEEEccccccccCcchHHHHHHHHhccccCC-eEEEc
Q 016351 147 VIISEWMGYFLLRESMFDSVICARDRWLKPT-GVMYP 182 (391)
Q Consensus 147 ~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~g-G~ii~ 182 (391)
+|+- ..+. ...+....++|+++ |.++.
T Consensus 266 ~vid-~~G~--------~~~~~~~l~~l~~g~G~iv~ 293 (378)
T PLN02827 266 YSFE-CVGD--------TGIATTALQSCSDGWGLTVT 293 (378)
T ss_pred EEEE-CCCC--------hHHHHHHHHhhccCCCEEEE
Confidence 8884 2221 12344455678898 98874
|
|
| >PRK08644 thiamine biosynthesis protein ThiF; Provisional | Back alignment and domain information |
|---|
Probab=86.45 E-value=2.5 Score=37.71 Aligned_cols=73 Identities=16% Similarity=0.191 Sum_probs=45.4
Q ss_pred CCCEEEEECCcc-c-HHHHHHHHcCCCeEEEEech-------------------HHHHHHHHHHHHcCCCCcEEEEEccc
Q 016351 78 QGKTVLDVGTGS-G-ILAIWSAQAGARKVYAVEAT-------------------KMSDHARTLVKANNLQDVVEVIEGSV 136 (391)
Q Consensus 78 ~~~~VLDlGcGt-G-~l~~~~a~~g~~~V~avD~s-------------------~~~~~a~~~~~~~~~~~~v~~i~~d~ 136 (391)
+..+|+-+|||. | .++..+++.|..+++.+|.+ ..++.+.+++++.+..-+++.+...+
T Consensus 27 ~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~dvG~~Ka~~a~~~l~~lnp~v~v~~~~~~i 106 (212)
T PRK08644 27 KKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDVVEPSNLNRQQYFISQIGMPKVEALKENLLEINPFVEIEAHNEKI 106 (212)
T ss_pred hCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEeccccccccEeehhhCCChHHHHHHHHHHHHCCCCEEEEEeeec
Confidence 457899999995 4 46777888899889888865 23344445554433332355555444
Q ss_pred ccCC---CCCcccEEEE
Q 016351 137 EDIV---LPEKVDVIIS 150 (391)
Q Consensus 137 ~~~~---~~~~~D~Ivs 150 (391)
.... +-..+|+||.
T Consensus 107 ~~~~~~~~~~~~DvVI~ 123 (212)
T PRK08644 107 DEDNIEELFKDCDIVVE 123 (212)
T ss_pred CHHHHHHHHcCCCEEEE
Confidence 3311 1257899985
|
|
| >COG2933 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.36 E-value=2.6 Score=38.47 Aligned_cols=86 Identities=16% Similarity=0.200 Sum_probs=62.6
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCCCeEEEEechHHHHHHHHHHHHcCCCCcEEEEEcccccCCC-CCcccEEEEccccc
Q 016351 77 FQGKTVLDVGTGSGILAIWSAQAGARKVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVEDIVL-PEKVDVIISEWMGY 155 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~-~~~~D~Ivse~~~~ 155 (391)
.++....|+|+..|.++-.+.+.+- .|++||-..|++... .. ..|+....|-..+.+ +.+.|-.||+.+.
T Consensus 210 ~~~M~avDLGAcPGGWTyqLVkr~m-~V~aVDng~ma~sL~----dt---g~v~h~r~DGfk~~P~r~~idWmVCDmVE- 280 (358)
T COG2933 210 APGMWAVDLGACPGGWTYQLVKRNM-RVYAVDNGPMAQSLM----DT---GQVTHLREDGFKFRPTRSNIDWMVCDMVE- 280 (358)
T ss_pred cCCceeeecccCCCccchhhhhcce-EEEEeccchhhhhhh----cc---cceeeeeccCcccccCCCCCceEEeehhc-
Confidence 4677899999999999999999987 799999877654332 22 238888888887766 4899999998752
Q ss_pred cccCcchHHHHHHHHhccccCC
Q 016351 156 FLLRESMFDSVICARDRWLKPT 177 (391)
Q Consensus 156 ~~~~e~~l~~~l~~~~~~L~~g 177 (391)
....+-..+..+|..|
T Consensus 281 ------kP~rv~~li~~Wl~nG 296 (358)
T COG2933 281 ------KPARVAALIAKWLVNG 296 (358)
T ss_pred ------CcHHHHHHHHHHHHcc
Confidence 2233444455666655
|
|
| >cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA | Back alignment and domain information |
|---|
Probab=86.20 E-value=2.1 Score=38.64 Aligned_cols=73 Identities=25% Similarity=0.288 Sum_probs=45.9
Q ss_pred CCCEEEEECCcc-c-HHHHHHHHcCCCeEEEEe-------------------ch-HHHHHHHHHHHHcCCCCcEEEEEcc
Q 016351 78 QGKTVLDVGTGS-G-ILAIWSAQAGARKVYAVE-------------------AT-KMSDHARTLVKANNLQDVVEVIEGS 135 (391)
Q Consensus 78 ~~~~VLDlGcGt-G-~l~~~~a~~g~~~V~avD-------------------~s-~~~~~a~~~~~~~~~~~~v~~i~~d 135 (391)
.+.+|+-+|||. | ..+..+++.|..+++.+| +. ..++.+.+++++.+-.-+|+.+...
T Consensus 20 ~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~i~~~~~~ 99 (228)
T cd00757 20 KNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINPDVEIEAYNER 99 (228)
T ss_pred hCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhCCCCEEEEecce
Confidence 457899999995 4 456778888998888884 33 3445555555554432236666555
Q ss_pred cccCC---CCCcccEEEE
Q 016351 136 VEDIV---LPEKVDVIIS 150 (391)
Q Consensus 136 ~~~~~---~~~~~D~Ivs 150 (391)
+..-. +-..+|+||+
T Consensus 100 i~~~~~~~~~~~~DvVi~ 117 (228)
T cd00757 100 LDAENAEELIAGYDLVLD 117 (228)
T ss_pred eCHHHHHHHHhCCCEEEE
Confidence 42211 1256999997
|
Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1). |
| >cd08232 idonate-5-DH L-idonate 5-dehydrogenase | Back alignment and domain information |
|---|
Probab=86.17 E-value=4.3 Score=38.58 Aligned_cols=90 Identities=23% Similarity=0.361 Sum_probs=53.3
Q ss_pred CCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcc---cccCCC-CCcccEEE
Q 016351 77 FQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGS---VEDIVL-PEKVDVII 149 (391)
Q Consensus 77 ~~~~~VLDlGcGt-G~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d---~~~~~~-~~~~D~Iv 149 (391)
.++.+||..|||. |..+..++++ |..+|++++.+ ...+.+++ .+.. .++..+ ...+.. .+.+|+++
T Consensus 164 ~~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~----~g~~---~vi~~~~~~~~~~~~~~~~vd~vl 236 (339)
T cd08232 164 LAGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARA----MGAD---ETVNLARDPLAAYAADKGDFDVVF 236 (339)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH----cCCC---EEEcCCchhhhhhhccCCCccEEE
Confidence 3778899998875 5666666665 77579999988 65554433 2332 222211 112211 24589998
Q ss_pred EccccccccCcchHHHHHHHHhccccCCeEEEc
Q 016351 150 SEWMGYFLLRESMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 150 se~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~ 182 (391)
... + . ...+....+.|+++|.++.
T Consensus 237 d~~-g----~----~~~~~~~~~~L~~~G~~v~ 260 (339)
T cd08232 237 EAS-G----A----PAALASALRVVRPGGTVVQ 260 (339)
T ss_pred ECC-C----C----HHHHHHHHHHHhcCCEEEE
Confidence 521 1 0 1234556688899999874
|
L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai |
| >cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases | Back alignment and domain information |
|---|
Probab=86.11 E-value=1.3 Score=42.41 Aligned_cols=95 Identities=26% Similarity=0.354 Sum_probs=54.8
Q ss_pred CCCCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEccc----ccCCCCCcccE
Q 016351 75 HHFQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSV----EDIVLPEKVDV 147 (391)
Q Consensus 75 ~~~~~~~VLDlGcGt-G~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~----~~~~~~~~~D~ 147 (391)
...++.+||-.|+|. |..+..+|++ |+.+|++++.+ ...+.+++ .|....+.....+. ..+.....+|+
T Consensus 163 ~~~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~i~~~~~~~~~d~ 238 (351)
T cd08285 163 NIKLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKE----YGATDIVDYKNGDVVEQILKLTGGKGVDA 238 (351)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----cCCceEecCCCCCHHHHHHHHhCCCCCcE
Confidence 345678899888774 5666666666 77679999988 55555543 44321111111111 11111246898
Q ss_pred EEEccccccccCcchHHHHHHHHhccccCCeEEEc
Q 016351 148 IISEWMGYFLLRESMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 148 Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~ 182 (391)
++... + . ...+....+.|+++|.++-
T Consensus 239 vld~~-g----~----~~~~~~~~~~l~~~G~~v~ 264 (351)
T cd08285 239 VIIAG-G----G----QDTFEQALKVLKPGGTISN 264 (351)
T ss_pred EEECC-C----C----HHHHHHHHHHhhcCCEEEE
Confidence 88511 1 1 1245566677899998873
|
This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. |
| >COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=86.09 E-value=2.1 Score=40.75 Aligned_cols=45 Identities=33% Similarity=0.456 Sum_probs=36.2
Q ss_pred CCCCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHH
Q 016351 75 HHFQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTL 119 (391)
Q Consensus 75 ~~~~~~~VLDlGcGt-G~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~ 119 (391)
+..++..|.-+|||. |+.++.-|+. |+.+++|||++ ..+++|++.
T Consensus 182 ~v~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~f 229 (366)
T COG1062 182 KVEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKF 229 (366)
T ss_pred cCCCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHhc
Confidence 345678999999987 7777776664 99999999999 778887764
|
|
| >KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=86.05 E-value=1.9 Score=40.56 Aligned_cols=44 Identities=27% Similarity=0.416 Sum_probs=34.1
Q ss_pred CCCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHH
Q 016351 76 HFQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTL 119 (391)
Q Consensus 76 ~~~~~~VLDlGcGt-G~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~ 119 (391)
..++.+|.-.|+|. |+..++-+++ ||++++|||++ +-.+.|++.
T Consensus 190 v~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~f 236 (375)
T KOG0022|consen 190 VEPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKEF 236 (375)
T ss_pred cCCCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHhc
Confidence 44678899999987 6666666665 99999999999 777777653
|
|
| >KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=85.80 E-value=2.4 Score=40.95 Aligned_cols=108 Identities=21% Similarity=0.175 Sum_probs=68.3
Q ss_pred hcCCCCCCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHH-------HHHHcCC-CCcEEEEEcccccCCC
Q 016351 72 QNKHHFQGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHART-------LVKANNL-QDVVEVIEGSVEDIVL 141 (391)
Q Consensus 72 ~~~~~~~~~~VLDlGcGtG~l~~~~a~~-g~~~V~avD~s-~~~~~a~~-------~~~~~~~-~~~v~~i~~d~~~~~~ 141 (391)
+.+...++..-.|+|.|.|.+..+++.. +.+.-+|+|+. ...+.|.. ..+..|- .+.++.+++++.+...
T Consensus 186 dEl~~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~gsf~~~~~ 265 (419)
T KOG3924|consen 186 DELKLGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHGSFLDPKR 265 (419)
T ss_pred HHhccCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeecccccCCHHH
Confidence 3345567789999999999987766654 56677888876 43343332 2233343 4568999998877432
Q ss_pred ----CCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 142 ----PEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 142 ----~~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
....++|+++.+ ...+ .+..=+..+..-+++|.++|-.
T Consensus 266 v~eI~~eatvi~vNN~---~Fdp-~L~lr~~eil~~ck~gtrIiS~ 307 (419)
T KOG3924|consen 266 VTEIQTEATVIFVNNV---AFDP-ELKLRSKEILQKCKDGTRIISS 307 (419)
T ss_pred HHHHhhcceEEEEecc---cCCH-HHHHhhHHHHhhCCCcceEecc
Confidence 257899997543 2222 2222234566667899888833
|
|
| >TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=85.74 E-value=5.1 Score=38.18 Aligned_cols=88 Identities=20% Similarity=0.087 Sum_probs=52.4
Q ss_pred CCCCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEE-
Q 016351 75 HHFQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIIS- 150 (391)
Q Consensus 75 ~~~~~~~VLDlGcGt-G~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~~D~Ivs- 150 (391)
...++.+||-.|+|. |.++..+|+. |+ +|++++.+ +-.+.|++ .|... ++. ..+. ..+.+|+++-
T Consensus 162 ~~~~g~~VlV~G~g~iG~~a~~~a~~~G~-~vi~~~~~~~~~~~a~~----~Ga~~---vi~--~~~~-~~~~~d~~i~~ 230 (329)
T TIGR02822 162 SLPPGGRLGLYGFGGSAHLTAQVALAQGA-TVHVMTRGAAARRLALA----LGAAS---AGG--AYDT-PPEPLDAAILF 230 (329)
T ss_pred CCCCCCEEEEEcCCHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHH----hCCce---ecc--cccc-CcccceEEEEC
Confidence 445678999999864 5555666665 77 69999988 55555544 44432 111 1111 1245786653
Q ss_pred ccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 151 EWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 151 e~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
+.. ...+....+.|+++|.++..
T Consensus 231 ~~~----------~~~~~~~~~~l~~~G~~v~~ 253 (329)
T TIGR02822 231 APA----------GGLVPPALEALDRGGVLAVA 253 (329)
T ss_pred CCc----------HHHHHHHHHhhCCCcEEEEE
Confidence 111 12455566789999998753
|
Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized. |
| >COG1565 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=85.66 E-value=3.4 Score=39.62 Aligned_cols=46 Identities=22% Similarity=0.343 Sum_probs=34.1
Q ss_pred CCCEEEEECCcccHHHHHHHHcC---------CCeEEEEech-HHHHHHHHHHHHc
Q 016351 78 QGKTVLDVGTGSGILAIWSAQAG---------ARKVYAVEAT-KMSDHARTLVKAN 123 (391)
Q Consensus 78 ~~~~VLDlGcGtG~l~~~~a~~g---------~~~V~avD~s-~~~~~a~~~~~~~ 123 (391)
....+++||+|+|.++..+++.. +.++..||.| ...+.-+++.+..
T Consensus 77 ~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~ 132 (370)
T COG1565 77 APLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKAT 132 (370)
T ss_pred CCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhcc
Confidence 34689999999999977665542 4489999999 7666666666543
|
|
| >TIGR00518 alaDH alanine dehydrogenase | Back alignment and domain information |
|---|
Probab=85.63 E-value=1.7 Score=42.35 Aligned_cols=96 Identities=17% Similarity=0.083 Sum_probs=48.6
Q ss_pred CCCEEEEECCcc-cHHHHHHHH-cCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC-CCCcccEEEEccc
Q 016351 78 QGKTVLDVGTGS-GILAIWSAQ-AGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV-LPEKVDVIISEWM 153 (391)
Q Consensus 78 ~~~~VLDlGcGt-G~l~~~~a~-~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~-~~~~~D~Ivse~~ 153 (391)
++.+|+-+|+|. |..+...++ .|+ +|+++|.+ ..++.+.... +. .+.....+..++. .-..+|+||+-..
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lGa-~V~v~d~~~~~~~~l~~~~---g~--~v~~~~~~~~~l~~~l~~aDvVI~a~~ 239 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLGA-TVTILDINIDRLRQLDAEF---GG--RIHTRYSNAYEIEDAVKRADLLIGAVL 239 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCCC-eEEEEECCHHHHHHHHHhc---Cc--eeEeccCCHHHHHHHHccCCEEEEccc
Confidence 557799999985 665555554 487 69999998 5444332221 11 1222111212221 1157899997321
Q ss_pred cccccCcchHHHHHHHHhccccCCeEEEc
Q 016351 154 GYFLLRESMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 154 ~~~~~~e~~l~~~l~~~~~~L~~gG~ii~ 182 (391)
... .. ....+-....+.++++++++-
T Consensus 240 ~~g--~~-~p~lit~~~l~~mk~g~vIvD 265 (370)
T TIGR00518 240 IPG--AK-APKLVSNSLVAQMKPGAVIVD 265 (370)
T ss_pred cCC--CC-CCcCcCHHHHhcCCCCCEEEE
Confidence 000 00 011112333355788887763
|
The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP. |
| >PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures [] | Back alignment and domain information |
|---|
Probab=85.40 E-value=3.5 Score=37.98 Aligned_cols=65 Identities=18% Similarity=0.320 Sum_probs=44.0
Q ss_pred CCCCEEEEECCcccHHHHHHHHcC------CCeEEEEechHHHHHHHHHHHHcCCCCcEEEEEcccccCCC
Q 016351 77 FQGKTVLDVGTGSGILAIWSAQAG------ARKVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVEDIVL 141 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~l~~~~a~~g------~~~V~avD~s~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~ 141 (391)
.++..++|+|||.|.|+.++++.- ...++.||....-..+...+........++=+..|+.++.+
T Consensus 17 ~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~K~D~~~~~~~~~~~~~R~riDI~dl~l 87 (259)
T PF05206_consen 17 NPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRHKADNKIRKDESEPKFERLRIDIKDLDL 87 (259)
T ss_pred CCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcccccchhhhhccCCCCceEEEEEEeeccch
Confidence 456789999999999999988863 23789999862212343444443321237777888888764
|
The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing |
| >PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues | Back alignment and domain information |
|---|
Probab=85.11 E-value=1.5 Score=38.08 Aligned_cols=108 Identities=17% Similarity=0.265 Sum_probs=61.9
Q ss_pred HhHHHHHHHHHhcCCCCCC-CEEEEECCcccHHHHHHHHc-CCCeEEEEechHHHHHHHHHHHHcCCC--CcEEEEEccc
Q 016351 61 VRMDAYFNSIFQNKHHFQG-KTVLDVGTGSGILAIWSAQA-GARKVYAVEATKMSDHARTLVKANNLQ--DVVEVIEGSV 136 (391)
Q Consensus 61 ~r~~~~~~~i~~~~~~~~~-~~VLDlGcGtG~l~~~~a~~-g~~~V~avD~s~~~~~a~~~~~~~~~~--~~v~~i~~d~ 136 (391)
.|...+.+.+...+...++ ..|+.||||-=.....+... +..+++=+|..++++.-++.++..+.. ...+++..|+
T Consensus 60 ~Rt~~iD~~v~~~i~~~~~~~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~p~v~~~K~~~l~~~~~~~~~~~~~v~~Dl 139 (183)
T PF04072_consen 60 ARTRYIDDAVREFIAKHPGARQVVNLGAGLDTRAYRLDNPAGGVRWFEVDLPEVIALKRRLLPESGARPPANYRYVPADL 139 (183)
T ss_dssp HHHHHHHHHHHHHHHHHTTESEEEEET-TT--HHHHHHHTTTTEEEEEEE-HHHHHHHHHHHHHTHHHHHEESSEEES-T
T ss_pred HHHHHHHHHHHHhhccCCCCcEEEEcCCCCCchHHHhhccccceEEEEeCCHHHHHHHHHHHHhCcccCCcceeEEeccc
Confidence 4555555555555433344 48999999987777777664 233566666666777777776665321 2246788898
Q ss_pred ccCC---------C-CCcccEEEEccccccccCcchHHHHHHH
Q 016351 137 EDIV---------L-PEKVDVIISEWMGYFLLRESMFDSVICA 169 (391)
Q Consensus 137 ~~~~---------~-~~~~D~Ivse~~~~~~~~e~~l~~~l~~ 169 (391)
.+.. + +...-++++|.+...+..+ ....++..
T Consensus 140 ~~~~~~~~L~~~g~~~~~ptl~i~Egvl~Yl~~~-~~~~ll~~ 181 (183)
T PF04072_consen 140 RDDSWIDALPKAGFDPDRPTLFIAEGVLMYLSPE-QVDALLRA 181 (183)
T ss_dssp TSHHHHHHHHHCTT-TTSEEEEEEESSGGGS-HH-HHHHHHHH
T ss_pred cchhhHHHHHHhCCCCCCCeEEEEcchhhcCCHH-HHHHHHHH
Confidence 7631 1 2556688888876666544 34455544
|
It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A .... |
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=85.06 E-value=0.83 Score=41.30 Aligned_cols=53 Identities=23% Similarity=0.328 Sum_probs=37.7
Q ss_pred EEEEEcccccC--CCC-CcccEEEEcccccccc----------Cc---chHHHHHHHHhccccCCeEEEc
Q 016351 129 VEVIEGSVEDI--VLP-EKVDVIISEWMGYFLL----------RE---SMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 129 v~~i~~d~~~~--~~~-~~~D~Ivse~~~~~~~----------~e---~~l~~~l~~~~~~L~~gG~ii~ 182 (391)
++++++|+.++ .++ +++|+|+.++. |... .. .-+...+.++.|+|||||.++.
T Consensus 2 ~~l~~gD~le~l~~lpd~SVDLIiTDPP-Y~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~i 70 (227)
T PRK13699 2 SRFILGNCIDVMARFPDNAVDFILTDPP-YLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVS 70 (227)
T ss_pred CeEEechHHHHHHhCCccccceEEeCCC-cccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEE
Confidence 46888998875 455 89999999874 3211 00 1245678889999999998764
|
|
| >cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=84.99 E-value=1.7 Score=42.10 Aligned_cols=90 Identities=23% Similarity=0.307 Sum_probs=53.9
Q ss_pred CCCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEccc-------ccCCCCCcc
Q 016351 76 HFQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSV-------EDIVLPEKV 145 (391)
Q Consensus 76 ~~~~~~VLDlGcGt-G~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~-------~~~~~~~~~ 145 (391)
..++.+||-.|+|. |.+++.+|++ |+.+|++++.+ ...+.+++ .+.. .++..+- ..+. ...+
T Consensus 184 ~~~g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~~~k~~~~~~----~g~~---~~i~~~~~~~~~~v~~~~-~~~~ 255 (365)
T cd08278 184 PRPGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAKE----LGAT---HVINPKEEDLVAAIREIT-GGGV 255 (365)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----cCCc---EEecCCCcCHHHHHHHHh-CCCC
Confidence 44678898888765 6666667775 88779999988 55555443 3321 2222111 1112 3568
Q ss_pred cEEEEccccccccCcchHHHHHHHHhccccCCeEEEc
Q 016351 146 DVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 146 D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~ 182 (391)
|+|+... + . ...+....+.|+++|.++.
T Consensus 256 d~vld~~-g----~----~~~~~~~~~~l~~~G~~v~ 283 (365)
T cd08278 256 DYALDTT-G----V----PAVIEQAVDALAPRGTLAL 283 (365)
T ss_pred cEEEECC-C----C----cHHHHHHHHHhccCCEEEE
Confidence 9888521 1 1 1234556677899998874
|
Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu |
| >COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=84.47 E-value=5 Score=35.00 Aligned_cols=117 Identities=21% Similarity=0.236 Sum_probs=69.9
Q ss_pred cCChHhHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHH----cC-CCeEEEEech-HHHH-HHHHHHHHcCCCCcE
Q 016351 57 LSDRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQ----AG-ARKVYAVEAT-KMSD-HARTLVKANNLQDVV 129 (391)
Q Consensus 57 l~d~~r~~~~~~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~----~g-~~~V~avD~s-~~~~-~a~~~~~~~~~~~~v 129 (391)
++.....-.|++.|-+ .++..|++.|.--|..+++.|. .| ..+|.++|++ .-++ .|++ . ..|
T Consensus 52 ~k~p~D~~~yQellw~----~~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e------~-p~i 120 (237)
T COG3510 52 IKSPSDMWNYQELLWE----LQPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE------V-PDI 120 (237)
T ss_pred cCCHHHHHHHHHHHHh----cCCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc------C-CCe
Confidence 4445555566655544 3567899999988876666554 35 2379999999 5443 3332 1 349
Q ss_pred EEEEcccccCCC-------C-CcccEEEE-ccccccccCcchHHHHHHHHhccccCCeEEEcccceeE
Q 016351 130 EVIEGSVEDIVL-------P-EKVDVIIS-EWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHARMW 188 (391)
Q Consensus 130 ~~i~~d~~~~~~-------~-~~~D~Ivs-e~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~~~~~ 188 (391)
.|++++..+... . +.--+.+| +..+ ..+..+ ..++...++|.-|-+++.....+-
T Consensus 121 ~f~egss~dpai~eqi~~~~~~y~kIfvilDsdH---s~~hvL-Ael~~~~pllsaG~Y~vVeDs~v~ 184 (237)
T COG3510 121 LFIEGSSTDPAIAEQIRRLKNEYPKIFVILDSDH---SMEHVL-AELKLLAPLLSAGDYLVVEDSNVN 184 (237)
T ss_pred EEEeCCCCCHHHHHHHHHHhcCCCcEEEEecCCc---hHHHHH-HHHHHhhhHhhcCceEEEeccccc
Confidence 999999888632 1 22233344 2221 112222 346667788888988876555433
|
|
| >cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1 | Back alignment and domain information |
|---|
Probab=84.26 E-value=3.7 Score=36.20 Aligned_cols=74 Identities=15% Similarity=0.193 Sum_probs=45.3
Q ss_pred CCCEEEEECCcc-c-HHHHHHHHcCCCeEEEEech--H------------------HHHHHHHHHHHcCCCCcEEEEEcc
Q 016351 78 QGKTVLDVGTGS-G-ILAIWSAQAGARKVYAVEAT--K------------------MSDHARTLVKANNLQDVVEVIEGS 135 (391)
Q Consensus 78 ~~~~VLDlGcGt-G-~l~~~~a~~g~~~V~avD~s--~------------------~~~~a~~~~~~~~~~~~v~~i~~d 135 (391)
.+.+||-+|||. | ..+..++..|.++++.+|.. + .++.+++.+++.+-.-+++.....
T Consensus 20 ~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~ve~snL~rqfl~~~~diG~~Ka~a~~~~L~~lNp~v~i~~~~~~ 99 (197)
T cd01492 20 RSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRTVTEEDLGAQFLIPAEDLGQNRAEASLERLRALNPRVKVSVDTDD 99 (197)
T ss_pred HhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCcccHhhCCCCccccHHHcCchHHHHHHHHHHHHCCCCEEEEEecC
Confidence 457899999996 3 34666788899899998854 1 133444445444333235555554
Q ss_pred cccCC--CCCcccEEEEc
Q 016351 136 VEDIV--LPEKVDVIISE 151 (391)
Q Consensus 136 ~~~~~--~~~~~D~Ivse 151 (391)
+.+.. +-..||+|++.
T Consensus 100 ~~~~~~~~~~~~dvVi~~ 117 (197)
T cd01492 100 ISEKPEEFFSQFDVVVAT 117 (197)
T ss_pred ccccHHHHHhCCCEEEEC
Confidence 43321 12689999973
|
Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain. |
| >PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine | Back alignment and domain information |
|---|
Probab=83.99 E-value=4.8 Score=38.63 Aligned_cols=106 Identities=20% Similarity=0.254 Sum_probs=53.2
Q ss_pred CCCEEEEECCcccHHHHHHHHc--------C--C-------CeEEEEech--HHHHHHHHHHHH----cCCCC-cEEEEE
Q 016351 78 QGKTVLDVGTGSGILAIWSAQA--------G--A-------RKVYAVEAT--KMSDHARTLVKA----NNLQD-VVEVIE 133 (391)
Q Consensus 78 ~~~~VLDlGcGtG~l~~~~a~~--------g--~-------~~V~avD~s--~~~~~a~~~~~~----~~~~~-~v~~i~ 133 (391)
+.-+|+|+||.+|..++.+... . . -+|+--|.- +.-...+..-.. ....+ =+.-+.
T Consensus 16 ~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~gvp 95 (334)
T PF03492_consen 16 KPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSGVP 95 (334)
T ss_dssp TEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEEEE
T ss_pred CceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEecC
Confidence 3468999999999887765432 0 0 157777753 333332221111 00111 023334
Q ss_pred cccccCCCC-CcccEEEEcccccccc-------C-----------------------------cchHHHHHHHHhccccC
Q 016351 134 GSVEDIVLP-EKVDVIISEWMGYFLL-------R-----------------------------ESMFDSVICARDRWLKP 176 (391)
Q Consensus 134 ~d~~~~~~~-~~~D~Ivse~~~~~~~-------~-----------------------------e~~l~~~l~~~~~~L~~ 176 (391)
+.+-.--+| ++.|+++|-.-.+.+. . ..++..+|+.+.+-|+|
T Consensus 96 gSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~ 175 (334)
T PF03492_consen 96 GSFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAEELVP 175 (334)
T ss_dssp S-TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHHHEEE
T ss_pred chhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhheecc
Confidence 444443344 8899999832111111 0 12567788888899999
Q ss_pred CeEEEcc
Q 016351 177 TGVMYPS 183 (391)
Q Consensus 177 gG~ii~~ 183 (391)
||+++..
T Consensus 176 GG~mvl~ 182 (334)
T PF03492_consen 176 GGRMVLT 182 (334)
T ss_dssp EEEEEEE
T ss_pred CcEEEEE
Confidence 9999854
|
Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B. |
| >PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=83.97 E-value=6.7 Score=36.71 Aligned_cols=93 Identities=20% Similarity=0.250 Sum_probs=56.1
Q ss_pred CEEEEECCcc-c-HHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHc----------CC---------CCcEEEEEcccc
Q 016351 80 KTVLDVGTGS-G-ILAIWSAQAGARKVYAVEAT-KMSDHARTLVKAN----------NL---------QDVVEVIEGSVE 137 (391)
Q Consensus 80 ~~VLDlGcGt-G-~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~----------~~---------~~~v~~i~~d~~ 137 (391)
++|.-||+|. | .++..+++.|. +|+.+|.+ +.++.+++.+... +. ..++.+. .|..
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~-~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~~ 81 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGY-DVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTS-TSYE 81 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEee-CCHH
Confidence 4688999996 4 46677777887 79999999 7777665543321 11 0112221 1221
Q ss_pred cCCCCCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEE
Q 016351 138 DIVLPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMY 181 (391)
Q Consensus 138 ~~~~~~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii 181 (391)
. -...|+|+.-. .........++..+.+.++++.+++
T Consensus 82 ~---~~~aDlVieav----~e~~~~k~~~~~~l~~~~~~~~il~ 118 (291)
T PRK06035 82 S---LSDADFIVEAV----PEKLDLKRKVFAELERNVSPETIIA 118 (291)
T ss_pred H---hCCCCEEEEcC----cCcHHHHHHHHHHHHhhCCCCeEEE
Confidence 1 15689888532 1121234667777888888888765
|
|
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=83.75 E-value=7.5 Score=37.97 Aligned_cols=92 Identities=12% Similarity=0.146 Sum_probs=63.1
Q ss_pred EEEEECCcccHHHHHHHHcCCCeEEEEechHHHHHHHHHHHHcCCCCc-EEEEEcccccCCCCCcccEEEEccccccccC
Q 016351 81 TVLDVGTGSGILAIWSAQAGARKVYAVEATKMSDHARTLVKANNLQDV-VEVIEGSVEDIVLPEKVDVIISEWMGYFLLR 159 (391)
Q Consensus 81 ~VLDlGcGtG~l~~~~a~~g~~~V~avD~s~~~~~a~~~~~~~~~~~~-v~~i~~d~~~~~~~~~~D~Ivse~~~~~~~~ 159 (391)
.||-++-.-|.|+..++..+...+ .|.--.-...+++.+.|++... ++++. ..+ ++++.+|+|+.-+. -.
T Consensus 47 ~~~i~nd~fGal~~~l~~~~~~~~--~ds~~~~~~~~~n~~~n~~~~~~~~~~~--~~~-~~~~~~d~vl~~~P----K~ 117 (378)
T PRK15001 47 PVLILNDAFGALSCALAEHKPYSI--GDSYISELATRENLRLNGIDESSVKFLD--STA-DYPQQPGVVLIKVP----KT 117 (378)
T ss_pred CEEEEcCchhHHHHHHHhCCCCee--ehHHHHHHHHHHHHHHcCCCcccceeec--ccc-cccCCCCEEEEEeC----CC
Confidence 699999999999999996654211 2322233456788999998643 55543 222 34677999986432 22
Q ss_pred cchHHHHHHHHhccccCCeEEE
Q 016351 160 ESMFDSVICARDRWLKPTGVMY 181 (391)
Q Consensus 160 e~~l~~~l~~~~~~L~~gG~ii 181 (391)
...+...+..+...|.||+.+|
T Consensus 118 ~~~l~~~l~~l~~~l~~~~~ii 139 (378)
T PRK15001 118 LALLEQQLRALRKVVTSDTRII 139 (378)
T ss_pred HHHHHHHHHHHHhhCCCCCEEE
Confidence 2356778888899999999977
|
|
| >PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=83.73 E-value=5.2 Score=37.43 Aligned_cols=99 Identities=13% Similarity=0.109 Sum_probs=56.5
Q ss_pred CEEEEECCcc--cHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHc---C-----CC--------CcEEEEEcccccCC
Q 016351 80 KTVLDVGTGS--GILAIWSAQAGARKVYAVEAT-KMSDHARTLVKAN---N-----LQ--------DVVEVIEGSVEDIV 140 (391)
Q Consensus 80 ~~VLDlGcGt--G~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~---~-----~~--------~~v~~i~~d~~~~~ 140 (391)
++|.-||+|. +.++..++++|. +|+.+|.+ +.++.+.+..... + +. .++++. .+..+.
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~~- 78 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGF-QTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYS-LDLKAA- 78 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe-CcHHHh-
Confidence 3688899985 345666777787 69999999 7777665432211 1 00 012222 222211
Q ss_pred CCCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcccce
Q 016351 141 LPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHAR 186 (391)
Q Consensus 141 ~~~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~~~ 186 (391)
-...|+|+.-.. ........++..+.+.++++.++..+..+
T Consensus 79 -~~~aD~Vi~avp----e~~~~k~~~~~~l~~~~~~~~il~~~tSt 119 (288)
T PRK09260 79 -VADADLVIEAVP----EKLELKKAVFETADAHAPAECYIATNTST 119 (288)
T ss_pred -hcCCCEEEEecc----CCHHHHHHHHHHHHhhCCCCcEEEEcCCC
Confidence 156899985321 11122345667777888888766554444
|
|
| >COG1255 Uncharacterized protein conserved in archaea [Function unknown] | Back alignment and domain information |
|---|
Probab=83.61 E-value=6.7 Score=31.11 Aligned_cols=59 Identities=22% Similarity=0.297 Sum_probs=44.5
Q ss_pred CEEEEECCcccH-HHHHHHHcCCCeEEEEechHHHHHHHHHHHHcCCCCcEEEEEcccccCCCC--CcccEEEE
Q 016351 80 KTVLDVGTGSGI-LAIWSAQAGARKVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVEDIVLP--EKVDVIIS 150 (391)
Q Consensus 80 ~~VLDlGcGtG~-l~~~~a~~g~~~V~avD~s~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~--~~~D~Ivs 150 (391)
.+|.++|-|.=. .+..+++.|. .|+++|+++. ++. ..++++..|+.+.... +..|+|.|
T Consensus 15 gkVvEVGiG~~~~VA~~L~e~g~-dv~atDI~~~------~a~-----~g~~~v~DDitnP~~~iY~~A~lIYS 76 (129)
T COG1255 15 GKVVEVGIGFFLDVAKRLAERGF-DVLATDINEK------TAP-----EGLRFVVDDITNPNISIYEGADLIYS 76 (129)
T ss_pred CcEEEEccchHHHHHHHHHHcCC-cEEEEecccc------cCc-----ccceEEEccCCCccHHHhhCccceee
Confidence 479999998743 4677888887 5999999932 111 2289999999886554 78999998
|
|
| >cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH) | Back alignment and domain information |
|---|
Probab=83.46 E-value=8.2 Score=37.09 Aligned_cols=94 Identities=26% Similarity=0.336 Sum_probs=52.1
Q ss_pred CCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcc-------cccCCCCCccc
Q 016351 77 FQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGS-------VEDIVLPEKVD 146 (391)
Q Consensus 77 ~~~~~VLDlGcGt-G~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d-------~~~~~~~~~~D 146 (391)
.++.+||-.|+|. |..+..+|+. |+++|++++.+ .....++ ..|....+.....+ +.++.....+|
T Consensus 176 ~~g~~vlI~g~g~vG~~~~~lak~~G~~~v~~~~~~~~~~~~~~----~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~~d 251 (361)
T cd08231 176 GAGDTVVVQGAGPLGLYAVAAAKLAGARRVIVIDGSPERLELAR----EFGADATIDIDELPDPQRRAIVRDITGGRGAD 251 (361)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHH----HcCCCeEEcCcccccHHHHHHHHHHhCCCCCc
Confidence 3678888888764 5555556665 77679999887 5444443 34442211111111 11111125689
Q ss_pred EEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 147 VIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 147 ~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
+|+.- .+. ...+....+.|+++|.++..
T Consensus 252 ~vid~-~g~--------~~~~~~~~~~l~~~G~~v~~ 279 (361)
T cd08231 252 VVIEA-SGH--------PAAVPEGLELLRRGGTYVLV 279 (361)
T ss_pred EEEEC-CCC--------hHHHHHHHHHhccCCEEEEE
Confidence 98852 111 12344556788999998743
|
This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino |
| >cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=83.29 E-value=11 Score=31.19 Aligned_cols=82 Identities=21% Similarity=0.287 Sum_probs=43.7
Q ss_pred HHHHHHHhcCCCCCCCEEEEECCcc-c-HHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC
Q 016351 65 AYFNSIFQNKHHFQGKTVLDVGTGS-G-ILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL 141 (391)
Q Consensus 65 ~~~~~i~~~~~~~~~~~VLDlGcGt-G-~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~ 141 (391)
.+.+++...-...++++|+-+|||. | .++..+++.|...|+.+|.+ +..+...+...... +.....+..+.
T Consensus 5 g~~~a~~~~~~~~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~~----~~~~~~~~~~~-- 78 (155)
T cd01065 5 GFVRALEEAGIELKGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELG----IAIAYLDLEEL-- 78 (155)
T ss_pred HHHHHHHhhCCCCCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhcc----cceeecchhhc--
Confidence 3445555543335678999999974 2 23334444554579999988 54443333222111 11122233222
Q ss_pred CCcccEEEEcc
Q 016351 142 PEKVDVIISEW 152 (391)
Q Consensus 142 ~~~~D~Ivse~ 152 (391)
.+.+|+|++-.
T Consensus 79 ~~~~Dvvi~~~ 89 (155)
T cd01065 79 LAEADLIINTT 89 (155)
T ss_pred cccCCEEEeCc
Confidence 26799999843
|
Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann |
| >TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=83.19 E-value=7.9 Score=37.14 Aligned_cols=43 Identities=26% Similarity=0.383 Sum_probs=32.1
Q ss_pred CCCCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHH
Q 016351 75 HHFQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHART 118 (391)
Q Consensus 75 ~~~~~~~VLDlGcGt-G~l~~~~a~~-g~~~V~avD~s-~~~~~a~~ 118 (391)
...++.+||-.|+|. |.++..+|++ |+ +|++++.+ +.++.+++
T Consensus 163 ~~~~g~~VlV~G~G~vG~~a~~~a~~~G~-~vi~~~~~~~~~~~~~~ 208 (349)
T TIGR03201 163 GLKKGDLVIVIGAGGVGGYMVQTAKAMGA-AVVAIDIDPEKLEMMKG 208 (349)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEcCCHHHHHHHHH
Confidence 345678999999976 6777777776 77 69999988 66666643
|
Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA. |
| >TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent | Back alignment and domain information |
|---|
Probab=82.64 E-value=2.7 Score=41.33 Aligned_cols=99 Identities=23% Similarity=0.201 Sum_probs=55.8
Q ss_pred CCCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEc---cc----ccCCCCCcc
Q 016351 76 HFQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEG---SV----EDIVLPEKV 145 (391)
Q Consensus 76 ~~~~~~VLDlGcGt-G~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~---d~----~~~~~~~~~ 145 (391)
..++.+||-.|+|. |.++..+|++ |++.|+++|.+ .-++.|++ .|.. .+... +. .++.....+
T Consensus 183 ~~~g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~~~a~~----~Ga~---~v~~~~~~~~~~~v~~~~~~~g~ 255 (393)
T TIGR02819 183 VGPGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARLAQARS----FGCE---TVDLSKDATLPEQIEQILGEPEV 255 (393)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHH----cCCe---EEecCCcccHHHHHHHHcCCCCC
Confidence 45677888888875 6666667765 88667777887 55666554 3432 12211 11 111112468
Q ss_pred cEEEEccccccc------cCcchHHHHHHHHhccccCCeEEEc
Q 016351 146 DVIISEWMGYFL------LRESMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 146 D~Ivse~~~~~~------~~e~~l~~~l~~~~~~L~~gG~ii~ 182 (391)
|+++- ..+.-. ..+......+....++++++|.++.
T Consensus 256 Dvvid-~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~ 297 (393)
T TIGR02819 256 DCAVD-CVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGI 297 (393)
T ss_pred cEEEE-CCCCccccccccccccchHHHHHHHHHHhhCCCEEEE
Confidence 98885 122110 0001122356666789999999875
|
Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent. |
| >PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=82.60 E-value=7.7 Score=36.27 Aligned_cols=96 Identities=13% Similarity=0.150 Sum_probs=56.0
Q ss_pred CEEEEECCcc-c-HHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHc--------CCC---------CcEEEEEcccccC
Q 016351 80 KTVLDVGTGS-G-ILAIWSAQAGARKVYAVEAT-KMSDHARTLVKAN--------NLQ---------DVVEVIEGSVEDI 139 (391)
Q Consensus 80 ~~VLDlGcGt-G-~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~--------~~~---------~~v~~i~~d~~~~ 139 (391)
.+|.-||+|. | .++..++++|. +|+.+|.+ +.++.+++.++.. .+. .++++. .|..+.
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~-~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~d~~~a 81 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGF-DVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLT-TDLAEA 81 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEe-CCHHHH
Confidence 4688899986 2 35566777777 79999999 7777766543211 111 123322 233221
Q ss_pred CCCCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 140 VLPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 140 ~~~~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
-...|+|+.-.. ........++..+...++++.++...
T Consensus 82 --~~~aDlVieavp----e~~~~k~~~~~~l~~~~~~~~ii~sn 119 (287)
T PRK08293 82 --VKDADLVIEAVP----EDPEIKGDFYEELAKVAPEKTIFATN 119 (287)
T ss_pred --hcCCCEEEEecc----CCHHHHHHHHHHHHhhCCCCCEEEEC
Confidence 156898886321 11123456677777778777765433
|
|
| >PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=82.08 E-value=0.33 Score=39.22 Aligned_cols=82 Identities=28% Similarity=0.365 Sum_probs=51.3
Q ss_pred cccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEccccc-------CCCCCcccEEEEcccccccc
Q 016351 88 GSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVED-------IVLPEKVDVIISEWMGYFLL 158 (391)
Q Consensus 88 GtG~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~-------~~~~~~~D~Ivse~~~~~~~ 158 (391)
|.|.++..+|++ | .+|+++|.+ .-++.+++ .|.. .++..+-.+ +.....+|+|+-- .+
T Consensus 1 ~vG~~a~q~ak~~G-~~vi~~~~~~~k~~~~~~----~Ga~---~~~~~~~~~~~~~i~~~~~~~~~d~vid~-~g---- 67 (130)
T PF00107_consen 1 GVGLMAIQLAKAMG-AKVIATDRSEEKLELAKE----LGAD---HVIDYSDDDFVEQIRELTGGRGVDVVIDC-VG---- 67 (130)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEESSHHHHHHHHH----TTES---EEEETTTSSHHHHHHHHTTTSSEEEEEES-SS----
T ss_pred ChHHHHHHHHHHcC-CEEEEEECCHHHHHHHHh----hccc---ccccccccccccccccccccccceEEEEe-cC----
Confidence 468888888887 7 589999999 66665543 4422 333332221 1112479999841 11
Q ss_pred CcchHHHHHHHHhccccCCeEEEcccce
Q 016351 159 RESMFDSVICARDRWLKPTGVMYPSHAR 186 (391)
Q Consensus 159 ~e~~l~~~l~~~~~~L~~gG~ii~~~~~ 186 (391)
. ...++....+|+++|.++.....
T Consensus 68 ~----~~~~~~~~~~l~~~G~~v~vg~~ 91 (130)
T PF00107_consen 68 S----GDTLQEAIKLLRPGGRIVVVGVY 91 (130)
T ss_dssp S----HHHHHHHHHHEEEEEEEEEESST
T ss_pred c----HHHHHHHHHHhccCCEEEEEEcc
Confidence 1 24566777889999998855443
|
1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: |
| >PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=82.02 E-value=8.1 Score=36.87 Aligned_cols=94 Identities=20% Similarity=0.206 Sum_probs=56.9
Q ss_pred CEEEEECCcc-c-HHHHHHHHcCCCeEEEEech-HHHHHHHHHHH-------HcCCC-----CcEEEEEcccccCCCCCc
Q 016351 80 KTVLDVGTGS-G-ILAIWSAQAGARKVYAVEAT-KMSDHARTLVK-------ANNLQ-----DVVEVIEGSVEDIVLPEK 144 (391)
Q Consensus 80 ~~VLDlGcGt-G-~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~-------~~~~~-----~~v~~i~~d~~~~~~~~~ 144 (391)
++|--||+|+ | .++..++.+|. +|+..|.+ +.++.+++.++ +.++. .++++.. +..+. -..
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~-~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~-~l~~a--v~~ 83 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGL-DVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVA-TIEAC--VAD 83 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecC-CHHHH--hcC
Confidence 6789999996 3 46677788888 79999999 66665544332 12221 1233221 22211 157
Q ss_pred ccEEEEccccccccCcchHHHHHHHHhccccCCeEEE
Q 016351 145 VDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMY 181 (391)
Q Consensus 145 ~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii 181 (391)
.|+|+-.. ......-..++..+.+.++|+.++-
T Consensus 84 aDlViEav----pE~l~vK~~lf~~l~~~~~~~aIla 116 (321)
T PRK07066 84 ADFIQESA----PEREALKLELHERISRAAKPDAIIA 116 (321)
T ss_pred CCEEEECC----cCCHHHHHHHHHHHHHhCCCCeEEE
Confidence 89888532 2222334577888888999988443
|
|
| >cd01487 E1_ThiF_like E1_ThiF_like | Back alignment and domain information |
|---|
Probab=81.99 E-value=5.4 Score=34.33 Aligned_cols=30 Identities=27% Similarity=0.376 Sum_probs=23.6
Q ss_pred EEEEECCcc-cH-HHHHHHHcCCCeEEEEech
Q 016351 81 TVLDVGTGS-GI-LAIWSAQAGARKVYAVEAT 110 (391)
Q Consensus 81 ~VLDlGcGt-G~-l~~~~a~~g~~~V~avD~s 110 (391)
+|+-+|||. |. .+..+++.|..+++.+|.+
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D 32 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFD 32 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 488999995 54 5777888899889888865
|
Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=81.96 E-value=6.4 Score=36.85 Aligned_cols=98 Identities=18% Similarity=0.276 Sum_probs=59.5
Q ss_pred CEEEEECCcc--cHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHH-------cCCC---------CcEEEEEcccccCC
Q 016351 80 KTVLDVGTGS--GILAIWSAQAGARKVYAVEAT-KMSDHARTLVKA-------NNLQ---------DVVEVIEGSVEDIV 140 (391)
Q Consensus 80 ~~VLDlGcGt--G~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~-------~~~~---------~~v~~i~~d~~~~~ 140 (391)
.+|--||+|+ +.++..++++|. .|+.+|.+ +.++.+++.+.. .|.- .++++ ..|...+
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~-~~~~~~~- 82 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGV-DVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRF-TTDLGDF- 82 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEe-eCCHHHh-
Confidence 4788999996 346677788888 79999999 777776555332 1110 11222 2333222
Q ss_pred CCCcccEEEEccccccccCcchHHHHHHHHhccc-cCCeEEEcccce
Q 016351 141 LPEKVDVIISEWMGYFLLRESMFDSVICARDRWL-KPTGVMYPSHAR 186 (391)
Q Consensus 141 ~~~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L-~~gG~ii~~~~~ 186 (391)
...|+|+-.. ......-..++..+.+.+ +|+.++.-+..+
T Consensus 83 --~~~d~ViEav----~E~~~~K~~l~~~l~~~~~~~~~il~snTS~ 123 (286)
T PRK07819 83 --ADRQLVIEAV----VEDEAVKTEIFAELDKVVTDPDAVLASNTSS 123 (286)
T ss_pred --CCCCEEEEec----ccCHHHHHHHHHHHHHhhCCCCcEEEECCCC
Confidence 5789988532 222233456777778887 777766544433
|
|
| >cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase | Back alignment and domain information |
|---|
Probab=81.83 E-value=3.4 Score=39.61 Aligned_cols=96 Identities=25% Similarity=0.286 Sum_probs=53.2
Q ss_pred CCCCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEccc----ccCCCCCcccE
Q 016351 75 HHFQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSV----EDIVLPEKVDV 147 (391)
Q Consensus 75 ~~~~~~~VLDlGcGt-G~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~----~~~~~~~~~D~ 147 (391)
...++.+||-.|+|. |.++..+|+. |+.+|++++.+ +..+.+++ .|....+.....+. .+....+.+|+
T Consensus 169 ~~~~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~~~----~ga~~~i~~~~~~~~~~l~~~~~~~~~d~ 244 (351)
T cd08233 169 GFKPGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELAEE----LGATIVLDPTEVDVVAEVRKLTGGGGVDV 244 (351)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----hCCCEEECCCccCHHHHHHHHhCCCCCCE
Confidence 345678888888753 4555555555 77679999887 66665543 24321111111111 11111135899
Q ss_pred EEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 148 IISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 148 Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
++-.. +. ...+....+.|+++|.++..
T Consensus 245 vid~~-g~--------~~~~~~~~~~l~~~G~~v~~ 271 (351)
T cd08233 245 SFDCA-GV--------QATLDTAIDALRPRGTAVNV 271 (351)
T ss_pred EEECC-CC--------HHHHHHHHHhccCCCEEEEE
Confidence 98521 10 12355566789999988743
|
(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. |
| >PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=81.76 E-value=11 Score=35.18 Aligned_cols=98 Identities=19% Similarity=0.248 Sum_probs=58.4
Q ss_pred CEEEEECCcc-c-HHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHc-------CC-C--------CcEEEEEcccccCC
Q 016351 80 KTVLDVGTGS-G-ILAIWSAQAGARKVYAVEAT-KMSDHARTLVKAN-------NL-Q--------DVVEVIEGSVEDIV 140 (391)
Q Consensus 80 ~~VLDlGcGt-G-~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~-------~~-~--------~~v~~i~~d~~~~~ 140 (391)
++|.-||+|. | .++..++++|. .|+.+|.+ +.++.+.+.+..+ +. . .++++. .+...+
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~~- 81 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAGY-DVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTA-TDLEDL- 81 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEee-CCHHHh-
Confidence 5688899996 3 45666777787 79999999 7766654433221 21 1 113322 233222
Q ss_pred CCCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcccce
Q 016351 141 LPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHAR 186 (391)
Q Consensus 141 ~~~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~~~ 186 (391)
...|+|+.-. .........++..+...++++.+++-...+
T Consensus 82 --~~aD~Vieav----pe~~~~k~~~~~~l~~~~~~~~ii~s~ts~ 121 (292)
T PRK07530 82 --ADCDLVIEAA----TEDETVKRKIFAQLCPVLKPEAILATNTSS 121 (292)
T ss_pred --cCCCEEEEcC----cCCHHHHHHHHHHHHhhCCCCcEEEEcCCC
Confidence 5789888522 111123456677788889999877644443
|
|
| >PRK07063 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=81.75 E-value=8.3 Score=35.02 Aligned_cols=74 Identities=23% Similarity=0.314 Sum_probs=49.6
Q ss_pred CCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC-----------
Q 016351 77 FQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL----------- 141 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~---l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~----------- 141 (391)
.++++||-.|+..|+ ++..+++.|+ +|+.++.+ +.++...+.+...+...++.++..|+.+...
T Consensus 5 l~~k~vlVtGas~gIG~~~a~~l~~~G~-~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 83 (260)
T PRK07063 5 LAGKVALVTGAAQGIGAAIARAFAREGA-AVALADLDAALAERAAAAIARDVAGARVLAVPADVTDAASVAAAVAAAEEA 83 (260)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHHHHHHHH
Confidence 457889999987764 4555667788 69999988 6555555544442223458888988876420
Q ss_pred CCcccEEEEc
Q 016351 142 PEKVDVIISE 151 (391)
Q Consensus 142 ~~~~D~Ivse 151 (391)
-+++|.+|..
T Consensus 84 ~g~id~li~~ 93 (260)
T PRK07063 84 FGPLDVLVNN 93 (260)
T ss_pred hCCCcEEEEC
Confidence 1468988874
|
|
| >PRK06197 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=81.56 E-value=12 Score=35.08 Aligned_cols=76 Identities=18% Similarity=0.214 Sum_probs=47.8
Q ss_pred CCCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC----------
Q 016351 76 HFQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL---------- 141 (391)
Q Consensus 76 ~~~~~~VLDlGcGtG~---l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~---------- 141 (391)
..++++||-.|+..|+ ++..+++.|+ +|+.+..+ +..+.+.+.+....-..++.++..|+.+...
T Consensus 13 ~~~~k~vlItGas~gIG~~~a~~l~~~G~-~vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~ 91 (306)
T PRK06197 13 DQSGRVAVVTGANTGLGYETAAALAAKGA-HVVLAVRNLDKGKAAAARITAATPGADVTLQELDLTSLASVRAAADALRA 91 (306)
T ss_pred cCCCCEEEEcCCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhCCCCceEEEECCCCCHHHHHHHHHHHHh
Confidence 4567899999976654 3444566687 68888877 5444444333322112348889999877520
Q ss_pred -CCcccEEEEcc
Q 016351 142 -PEKVDVIISEW 152 (391)
Q Consensus 142 -~~~~D~Ivse~ 152 (391)
-+++|++|...
T Consensus 92 ~~~~iD~li~nA 103 (306)
T PRK06197 92 AYPRIDLLINNA 103 (306)
T ss_pred hCCCCCEEEECC
Confidence 14689998754
|
|
| >PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=81.51 E-value=14 Score=34.27 Aligned_cols=98 Identities=15% Similarity=0.204 Sum_probs=58.1
Q ss_pred CEEEEECCcc--cHHHHHHHHcCCCeEEEEech-HHHHHHHHH-------HHHcCC-C--------CcEEEEEcccccCC
Q 016351 80 KTVLDVGTGS--GILAIWSAQAGARKVYAVEAT-KMSDHARTL-------VKANNL-Q--------DVVEVIEGSVEDIV 140 (391)
Q Consensus 80 ~~VLDlGcGt--G~l~~~~a~~g~~~V~avD~s-~~~~~a~~~-------~~~~~~-~--------~~v~~i~~d~~~~~ 140 (391)
.+|--||+|. +.++..+++.|. +|+++|.+ +.++.+++. +.+.+. . .++++. .|...
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g~-~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~-~~~~~-- 79 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGY-DVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGT-TDLDD-- 79 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCCC-ceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe-CCHHH--
Confidence 3578899986 456777788887 79999999 766554432 222331 1 123322 23222
Q ss_pred CCCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcccce
Q 016351 141 LPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHAR 186 (391)
Q Consensus 141 ~~~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~~~ 186 (391)
-+..|+|+--. .........++..+.+.++++.++......
T Consensus 80 -~~~aDlVi~av----~e~~~~k~~~~~~l~~~~~~~~il~s~ts~ 120 (282)
T PRK05808 80 -LKDADLVIEAA----TENMDLKKKIFAQLDEIAKPEAILATNTSS 120 (282)
T ss_pred -hccCCeeeecc----cccHHHHHHHHHHHHhhCCCCcEEEECCCC
Confidence 25689888522 111112347788888889999877554444
|
|
| >PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown | Back alignment and domain information |
|---|
Probab=81.46 E-value=6.1 Score=32.00 Aligned_cols=70 Identities=20% Similarity=0.211 Sum_probs=40.5
Q ss_pred HHHHHHhcCCCCCCCEEEEECCcccH-HHHHHHHcCCCeEEEEechHHHHHHHHHHHHcCCCCcEEEEEcccccCCCC--
Q 016351 66 YFNSIFQNKHHFQGKTVLDVGTGSGI-LAIWSAQAGARKVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-- 142 (391)
Q Consensus 66 ~~~~i~~~~~~~~~~~VLDlGcGtG~-l~~~~a~~g~~~V~avD~s~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~-- 142 (391)
+.+.|.+.. ...+|+++|-|.=. .+..++++|. .|+++|+++. .+. .| +.++..|+.+-.+.
T Consensus 4 ~a~~ia~~~---~~~kiVEVGiG~~~~vA~~L~~~G~-dV~~tDi~~~------~a~-~g----~~~v~DDif~P~l~iY 68 (127)
T PF03686_consen 4 FAEYIARLN---NYGKIVEVGIGFNPEVAKKLKERGF-DVIATDINPR------KAP-EG----VNFVVDDIFNPNLEIY 68 (127)
T ss_dssp HHHHHHHHS----SSEEEEET-TT--HHHHHHHHHS--EEEEE-SS-S-----------S----TTEE---SSS--HHHH
T ss_pred HHHHHHHhC---CCCcEEEECcCCCHHHHHHHHHcCC-cEEEEECccc------ccc-cC----cceeeecccCCCHHHh
Confidence 444555432 33589999999843 5677788897 7999999942 222 22 78889999885544
Q ss_pred CcccEEEE
Q 016351 143 EKVDVIIS 150 (391)
Q Consensus 143 ~~~D~Ivs 150 (391)
+..|+|.|
T Consensus 69 ~~a~lIYS 76 (127)
T PF03686_consen 69 EGADLIYS 76 (127)
T ss_dssp TTEEEEEE
T ss_pred cCCcEEEE
Confidence 78999998
|
; PDB: 2K4M_A. |
| >COG4301 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=81.28 E-value=30 Score=31.57 Aligned_cols=103 Identities=15% Similarity=0.198 Sum_probs=63.2
Q ss_pred CCCCEEEEECCcccHHHHHHHHc----C-CCeEEEEech-HHHHH-HHHHHHHc-CCCCcEEEEEcccccC--CCCCccc
Q 016351 77 FQGKTVLDVGTGSGILAIWSAQA----G-ARKVYAVEAT-KMSDH-ARTLVKAN-NLQDVVEVIEGSVEDI--VLPEKVD 146 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~l~~~~a~~----g-~~~V~avD~s-~~~~~-a~~~~~~~-~~~~~v~~i~~d~~~~--~~~~~~D 146 (391)
...+..+|+|+|+..-+..+.++ | ..+.+.||++ ..+.. |+.+.... ++. |.-+.+|...- .+++.--
T Consensus 77 ~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~--v~~l~~~~~~~La~~~~~~~ 154 (321)
T COG4301 77 TGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLE--VNALCGDYELALAELPRGGR 154 (321)
T ss_pred hCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCe--EeehhhhHHHHHhcccCCCe
Confidence 34689999999998666555544 3 2478999999 76654 44444432 333 66677776542 2232222
Q ss_pred EEEE---ccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 147 VIIS---EWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 147 ~Ivs---e~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
-+++ ..++.+... ....++..++..|+||-.++.-
T Consensus 155 Rl~~flGStlGN~tp~--e~~~Fl~~l~~a~~pGd~~LlG 192 (321)
T COG4301 155 RLFVFLGSTLGNLTPG--ECAVFLTQLRGALRPGDYFLLG 192 (321)
T ss_pred EEEEEecccccCCChH--HHHHHHHHHHhcCCCcceEEEe
Confidence 2222 233443332 3567899999999999887754
|
|
| >PLN02586 probable cinnamyl alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=80.94 E-value=7.1 Score=37.77 Aligned_cols=91 Identities=20% Similarity=0.203 Sum_probs=50.9
Q ss_pred CCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEE-cccccCC-CCCcccEEEEc
Q 016351 77 FQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIE-GSVEDIV-LPEKVDVIISE 151 (391)
Q Consensus 77 ~~~~~VLDlGcGt-G~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~-~d~~~~~-~~~~~D~Ivse 151 (391)
.++.+||-.|+|. |.++..+|++ |+ +|++++.+ +.... .++..|.. .++. .+...+. ..+.+|+++-
T Consensus 182 ~~g~~VlV~G~G~vG~~avq~Ak~~Ga-~vi~~~~~~~~~~~---~~~~~Ga~---~vi~~~~~~~~~~~~~~~D~vid- 253 (360)
T PLN02586 182 EPGKHLGVAGLGGLGHVAVKIGKAFGL-KVTVISSSSNKEDE---AINRLGAD---SFLVSTDPEKMKAAIGTMDYIID- 253 (360)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCcchhhh---HHHhCCCc---EEEcCCCHHHHHhhcCCCCEEEE-
Confidence 4678888899875 6777777776 77 68888877 43221 22234432 1221 1111110 1135888884
Q ss_pred cccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 152 WMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 152 ~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
..+ . ...+....+.|+++|.++..
T Consensus 254 ~~g----~----~~~~~~~~~~l~~~G~iv~v 277 (360)
T PLN02586 254 TVS----A----VHALGPLLGLLKVNGKLITL 277 (360)
T ss_pred CCC----C----HHHHHHHHHHhcCCcEEEEe
Confidence 222 1 12345566789999998743
|
|
| >PRK06139 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=80.70 E-value=11 Score=36.02 Aligned_cols=73 Identities=23% Similarity=0.257 Sum_probs=50.3
Q ss_pred CCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC-----------C
Q 016351 77 FQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV-----------L 141 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~---l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~-----------~ 141 (391)
.++++||-.|+++|+ ++..+++.|+ +|+.++.+ +.++...+.++..+. ++.++..|+.+.. .
T Consensus 5 l~~k~vlITGAs~GIG~aia~~la~~G~-~Vvl~~R~~~~l~~~~~~~~~~g~--~~~~~~~Dv~d~~~v~~~~~~~~~~ 81 (330)
T PRK06139 5 LHGAVVVITGASSGIGQATAEAFARRGA-RLVLAARDEEALQAVAEECRALGA--EVLVVPTDVTDADQVKALATQAASF 81 (330)
T ss_pred CCCCEEEEcCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCC--cEEEEEeeCCCHHHHHHHHHHHHHh
Confidence 456899999997764 4555677788 69999988 666655555555443 3778888886631 1
Q ss_pred CCcccEEEEcc
Q 016351 142 PEKVDVIISEW 152 (391)
Q Consensus 142 ~~~~D~Ivse~ 152 (391)
.+++|++|.+.
T Consensus 82 ~g~iD~lVnnA 92 (330)
T PRK06139 82 GGRIDVWVNNV 92 (330)
T ss_pred cCCCCEEEECC
Confidence 15789999854
|
|
| >cd05278 FDH_like Formaldehyde dehydrogenases | Back alignment and domain information |
|---|
Probab=80.37 E-value=3.6 Score=39.19 Aligned_cols=94 Identities=23% Similarity=0.422 Sum_probs=51.9
Q ss_pred CCCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEccc----ccCCCCCcccEE
Q 016351 76 HFQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSV----EDIVLPEKVDVI 148 (391)
Q Consensus 76 ~~~~~~VLDlGcGt-G~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~----~~~~~~~~~D~I 148 (391)
..++.+||..|+|. |..++.+|++ |..+|++++.+ ...+.+++ .+....+.....+. ..+...+.+|++
T Consensus 165 ~~~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~----~g~~~vi~~~~~~~~~~i~~~~~~~~~d~v 240 (347)
T cd05278 165 IKPGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKE----AGATDIINPKNGDIVEQILELTGGRGVDCV 240 (347)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHH----hCCcEEEcCCcchHHHHHHHHcCCCCCcEE
Confidence 34567888887753 6666666665 65578899777 55554443 23211111111111 111122568988
Q ss_pred EEccccccccCcchHHHHHHHHhccccCCeEEEc
Q 016351 149 ISEWMGYFLLRESMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 149 vse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~ 182 (391)
+.. .+. ...+....+.|+++|.++.
T Consensus 241 ld~-~g~--------~~~~~~~~~~l~~~G~~v~ 265 (347)
T cd05278 241 IEA-VGF--------EETFEQAVKVVRPGGTIAN 265 (347)
T ss_pred EEc-cCC--------HHHHHHHHHHhhcCCEEEE
Confidence 852 111 1245556678899998873
|
Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall |
| >TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=80.21 E-value=5.3 Score=38.70 Aligned_cols=95 Identities=21% Similarity=0.214 Sum_probs=54.3
Q ss_pred CCCCCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEE--ccc----ccCCCCCc
Q 016351 74 KHHFQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIE--GSV----EDIVLPEK 144 (391)
Q Consensus 74 ~~~~~~~~VLDlGcGt-G~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~--~d~----~~~~~~~~ 144 (391)
....++.+||-.|+|. |.++..+|++ |+.+|+++|.+ ..++.|++ .|....+.... .+. .++. .+.
T Consensus 181 ~~~~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~----~Ga~~~i~~~~~~~~~~~~v~~~~-~~g 255 (368)
T TIGR02818 181 AKVEEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKK----LGATDCVNPNDYDKPIQEVIVEIT-DGG 255 (368)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----hCCCeEEcccccchhHHHHHHHHh-CCC
Confidence 3445678999999875 6667767776 77679999998 66666644 34322121111 011 1111 136
Q ss_pred ccEEEEccccccccCcchHHHHHHHHhccccCC-eEEEc
Q 016351 145 VDVIISEWMGYFLLRESMFDSVICARDRWLKPT-GVMYP 182 (391)
Q Consensus 145 ~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~g-G~ii~ 182 (391)
+|+++-- .+. ...+....+.++++ |.++.
T Consensus 256 ~d~vid~-~G~--------~~~~~~~~~~~~~~~G~~v~ 285 (368)
T TIGR02818 256 VDYSFEC-IGN--------VNVMRAALECCHKGWGESII 285 (368)
T ss_pred CCEEEEC-CCC--------HHHHHHHHHHhhcCCCeEEE
Confidence 8888841 111 12344455678886 87763
|
The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols. |
| >cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins | Back alignment and domain information |
|---|
Probab=80.03 E-value=8.2 Score=31.77 Aligned_cols=70 Identities=23% Similarity=0.293 Sum_probs=41.5
Q ss_pred EEEEECCcc-cH-HHHHHHHcCCCeEEEEech--------------------HHHHHHHHHHHHcCCCCcEEEEEccccc
Q 016351 81 TVLDVGTGS-GI-LAIWSAQAGARKVYAVEAT--------------------KMSDHARTLVKANNLQDVVEVIEGSVED 138 (391)
Q Consensus 81 ~VLDlGcGt-G~-l~~~~a~~g~~~V~avD~s--------------------~~~~~a~~~~~~~~~~~~v~~i~~d~~~ 138 (391)
+||-+|||. |. ++..+++.|..+++.+|.+ ..++.+++.+++.+-.-+++.+......
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~~p~v~i~~~~~~~~~ 80 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELNPGVNVTAVPEGISE 80 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHHHCCCcEEEEEeeecCh
Confidence 478899984 43 5677888898888888743 2233344444443322235555544433
Q ss_pred C---CCCCcccEEEE
Q 016351 139 I---VLPEKVDVIIS 150 (391)
Q Consensus 139 ~---~~~~~~D~Ivs 150 (391)
. .+-.++|+|++
T Consensus 81 ~~~~~~~~~~diVi~ 95 (143)
T cd01483 81 DNLDDFLDGVDLVID 95 (143)
T ss_pred hhHHHHhcCCCEEEE
Confidence 2 12268999997
|
This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. |
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 391 | ||||
| 3r0q_C | 376 | A Uniquely Open Conformation Revealed In The Crysta | 1e-163 | ||
| 1ori_A | 343 | Structure Of The Predominant Protein Arginine Methy | 2e-50 | ||
| 1or8_A | 340 | Structure Of The Predominant Protein Arginine Methy | 2e-50 | ||
| 4hc4_A | 376 | Human Hmt1 Hnrnp Methyltransferase-Like Protein 6 ( | 4e-50 | ||
| 1orh_A | 353 | Structure Of The Predominant Protein Arginine Methy | 4e-50 | ||
| 3q7e_A | 349 | Crystal Structure Of Rat Protein Arginine Methyltra | 7e-50 | ||
| 2fyt_A | 340 | Human Hmt1 Hnrnp Methyltransferase-Like 3 (S. Cerev | 1e-47 | ||
| 1f3l_A | 321 | Crystal Structure Of The Conserved Core Of Protein | 9e-47 | ||
| 2y1w_A | 348 | Crystal Structure Of Coactivator Associated Arginin | 5e-46 | ||
| 3b3f_A | 341 | The 2.2 A Crystal Structure Of The Catalytic Domain | 5e-46 | ||
| 4ikp_A | 341 | Crystal Structure Of Coactivator-associated Arginin | 5e-46 | ||
| 2v74_B | 346 | Crystal Structure Of Coactivator-Associated Arginin | 7e-46 | ||
| 3b3j_A | 480 | The 2.55 A Crystal Structure Of The Apo Catalytic D | 7e-46 | ||
| 1g6q_1 | 328 | Crystal Structure Of Yeast Arginine Methyltransfera | 3e-40 | ||
| 3g5l_A | 253 | Crystal Structure Of Putative S-Adenosylmethionine | 2e-05 |
| >pdb|3R0Q|C Chain C, A Uniquely Open Conformation Revealed In The Crystal Structure Of Arabidopsis Thaliana Protein Arginine Methyltransferase 10 Length = 376 | Back alignment and structure |
|
| >pdb|1ORI|A Chain A, Structure Of The Predominant Protein Arginine Methyltransferase Prmt1 Length = 343 | Back alignment and structure |
|
| >pdb|1OR8|A Chain A, Structure Of The Predominant Protein Arginine Methyltransferase Prmt1 Length = 340 | Back alignment and structure |
|
| >pdb|4HC4|A Chain A, Human Hmt1 Hnrnp Methyltransferase-Like Protein 6 (S. Cerevisiae) Length = 376 | Back alignment and structure |
|
| >pdb|1ORH|A Chain A, Structure Of The Predominant Protein Arginine Methyltransferase Prmt1 Length = 353 | Back alignment and structure |
|
| >pdb|3Q7E|A Chain A, Crystal Structure Of Rat Protein Arginine Methyltransferase 1 (Prmt1) M48l Mutant Length = 349 | Back alignment and structure |
|
| >pdb|2FYT|A Chain A, Human Hmt1 Hnrnp Methyltransferase-Like 3 (S. Cerevisiae) Protein Length = 340 | Back alignment and structure |
|
| >pdb|1F3L|A Chain A, Crystal Structure Of The Conserved Core Of Protein Arginine Methyltransferase Prmt3 Length = 321 | Back alignment and structure |
|
| >pdb|2Y1W|A Chain A, Crystal Structure Of Coactivator Associated Arginine Methyltransferase 1 (Carm1) In Complex With Sinefungin And Indole Inhibitor Length = 348 | Back alignment and structure |
|
| >pdb|3B3F|A Chain A, The 2.2 A Crystal Structure Of The Catalytic Domain Of Coactivator- Associated Arginine Methyl Transferase I(Carm1,142-478), In Complex With S-Adenosyl Homocysteine Length = 341 | Back alignment and structure |
|
| >pdb|4IKP|A Chain A, Crystal Structure Of Coactivator-associated Arginine Methyltransferase 1 Length = 341 | Back alignment and structure |
|
| >pdb|2V74|B Chain B, Crystal Structure Of Coactivator-Associated Arginine Methyltransferase 1 (Carm1), In Complex With S-Adenosyl- Homocysteine Length = 346 | Back alignment and structure |
|
| >pdb|3B3J|A Chain A, The 2.55 A Crystal Structure Of The Apo Catalytic Domain Of Coactivator-Associated Arginine Methyl Transferase I(Carm1:28-507, Residues 28-146 And 479-507 Not Ordered) Length = 480 | Back alignment and structure |
|
| >pdb|1G6Q|1 Chain 1, Crystal Structure Of Yeast Arginine Methyltransferase, Hmt1 Length = 328 | Back alignment and structure |
|
| >pdb|3G5L|A Chain A, Crystal Structure Of Putative S-Adenosylmethionine Dependent Methyltransferase From Listeria Monocytogenes Length = 253 | Back alignment and structure |
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 391 | |||
| 4hc4_A | 376 | Protein arginine N-methyltransferase 6; HRMT1L6, S | 100.0 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 100.0 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 100.0 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 100.0 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 100.0 | |
| 4gqb_A | 637 | Protein arginine N-methyltransferase 5; TIM barrel | 100.0 | |
| 3ua3_A | 745 | Protein arginine N-methyltransferase 5; TIM-barrel | 100.0 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 100.0 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 100.0 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 99.65 | |
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 99.63 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 99.63 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 99.63 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 99.62 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 99.62 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 99.62 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 99.62 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 99.61 | |
| 3p9n_A | 189 | Possible methyltransferase (methylase); RV2966C, a | 99.6 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 99.6 | |
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 99.59 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 99.59 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 99.58 | |
| 4htf_A | 285 | S-adenosylmethionine-dependent methyltransferase; | 99.57 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 99.57 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 99.57 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 99.57 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 99.57 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 99.56 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 99.56 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 99.56 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 99.56 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 99.56 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 99.56 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 99.55 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 99.55 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 99.55 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 99.54 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 99.54 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 99.54 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 99.54 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 99.54 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 99.54 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 99.54 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 99.53 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 99.53 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 99.53 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 99.53 | |
| 2a14_A | 263 | Indolethylamine N-methyltransferase; SGC,INMT, str | 99.53 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 99.53 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 99.53 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 99.53 | |
| 2frn_A | 278 | Hypothetical protein PH0793; structural genomics, | 99.52 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 99.52 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 99.52 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 99.52 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 99.52 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 99.52 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 99.52 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 99.52 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 99.52 | |
| 1xdz_A | 240 | Methyltransferase GIDB; MCSG, protein structure in | 99.52 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 99.51 | |
| 2fpo_A | 202 | Methylase YHHF; structural genomics, putative meth | 99.51 | |
| 4hg2_A | 257 | Methyltransferase type 11; structural genomics, PS | 99.51 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 99.51 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 99.51 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 99.51 | |
| 1zx0_A | 236 | Guanidinoacetate N-methyltransferase; structural g | 99.5 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 99.5 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 99.5 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 99.5 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 99.5 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 99.49 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 99.49 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 99.49 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 99.49 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 99.48 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 99.48 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 99.47 | |
| 3lec_A | 230 | NADB-rossmann superfamily protein; PSI, MCSG, stru | 99.47 | |
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 99.47 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 99.47 | |
| 1jsx_A | 207 | Glucose-inhibited division protein B; methyltransf | 99.47 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 99.47 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 99.47 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 99.47 | |
| 3ntv_A | 232 | MW1564 protein; rossmann fold, putative methyltran | 99.47 | |
| 3kr9_A | 225 | SAM-dependent methyltransferase; class I rossmann- | 99.47 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 99.46 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 99.46 | |
| 3k6r_A | 278 | Putative transferase PH0793; structural genomics, | 99.46 | |
| 3gnl_A | 244 | Uncharacterized protein, DUF633, LMOF2365_1472; st | 99.46 | |
| 3fzg_A | 200 | 16S rRNA methylase; methyltransferase, plasmid, tr | 99.45 | |
| 2igt_A | 332 | SAM dependent methyltransferase; alpha-beta sandwi | 99.45 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 99.45 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 99.44 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 99.44 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 99.44 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 99.44 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 99.44 | |
| 1ws6_A | 171 | Methyltransferase; structural genomics, riken stru | 99.44 | |
| 3uwp_A | 438 | Histone-lysine N-methyltransferase, H3 lysine-79; | 99.44 | |
| 2vdw_A | 302 | Vaccinia virus capping enzyme D1 subunit; nucleoti | 99.44 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 99.43 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 99.43 | |
| 3u81_A | 221 | Catechol O-methyltransferase; neurotransmitter deg | 99.43 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 99.43 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 99.43 | |
| 1nt2_A | 210 | Fibrillarin-like PRE-rRNA processing protein; adeM | 99.43 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 99.43 | |
| 2i62_A | 265 | Nicotinamide N-methyltransferase; structural genom | 99.43 | |
| 2b3t_A | 276 | Protein methyltransferase HEMK; translation termin | 99.42 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 99.42 | |
| 2b78_A | 385 | Hypothetical protein SMU.776; structure genomics, | 99.42 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 99.42 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 99.42 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 99.42 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 99.42 | |
| 3dxy_A | 218 | TRNA (guanine-N(7)-)-methyltransferase; rossmann f | 99.42 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 99.42 | |
| 1yzh_A | 214 | TRNA (guanine-N(7)-)-methyltransferase; alpha-beta | 99.42 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 99.41 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 99.41 | |
| 3bkx_A | 275 | SAM-dependent methyltransferase; YP_807781.1, cycl | 99.4 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 99.4 | |
| 3bgv_A | 313 | MRNA CAP guanine-N7 methyltransferase; alternative | 99.4 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 99.39 | |
| 2fca_A | 213 | TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac | 99.39 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 99.39 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 99.39 | |
| 3c3p_A | 210 | Methyltransferase; NP_951602.1, structural genomic | 99.39 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 99.38 | |
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 99.38 | |
| 3r3h_A | 242 | O-methyltransferase, SAM-dependent; structural gen | 99.38 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 99.38 | |
| 3a27_A | 272 | TYW2, uncharacterized protein MJ1557; wybutosine m | 99.38 | |
| 2g72_A | 289 | Phenylethanolamine N-methyltransferase; HET: SAM F | 99.38 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 99.38 | |
| 4dzr_A | 215 | Protein-(glutamine-N5) methyltransferase, release | 99.37 | |
| 1o9g_A | 250 | RRNA methyltransferase; antibiotic resistance, Se- | 99.37 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 99.36 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 99.36 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 99.36 | |
| 3c0k_A | 396 | UPF0064 protein YCCW; PUA domain, adoMet dependent | 99.36 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 99.36 | |
| 3tma_A | 354 | Methyltransferase; thump domain; 2.05A {Thermus th | 99.35 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 99.35 | |
| 1u2z_A | 433 | Histone-lysine N-methyltransferase, H3 lysine-79 s | 99.35 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 99.35 | |
| 2ipx_A | 233 | RRNA 2'-O-methyltransferase fibrillarin; FBL, stru | 99.35 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 99.35 | |
| 2r3s_A | 335 | Uncharacterized protein; methyltransferase domain, | 99.35 | |
| 2as0_A | 396 | Hypothetical protein PH1915; RNA methyltransferase | 99.34 | |
| 3ajd_A | 274 | Putative methyltransferase MJ0026; tRNA, M5C, ross | 99.34 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 99.34 | |
| 2h00_A | 254 | Methyltransferase 10 domain containing protein; st | 99.34 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 99.34 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 99.33 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 99.33 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 99.33 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 99.32 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 99.32 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 99.32 | |
| 3mcz_A | 352 | O-methyltransferase; adomet_mtases, S-adenosylmeth | 99.31 | |
| 3htx_A | 950 | HEN1; HEN1, small RNA methyltransferase, protein-R | 99.31 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.31 | |
| 3gwz_A | 369 | MMCR; methyltransferase, mitomycin, S-adenosyl met | 99.31 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 99.3 | |
| 3dp7_A | 363 | SAM-dependent methyltransferase; structural genomi | 99.3 | |
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 99.3 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 99.3 | |
| 1qzz_A | 374 | RDMB, aclacinomycin-10-hydroxylase; anthracycline, | 99.3 | |
| 2yx1_A | 336 | Hypothetical protein MJ0883; methyl transferase, t | 99.3 | |
| 3ckk_A | 235 | TRNA (guanine-N(7)-)-methyltransferase; mettl1, S- | 99.3 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 99.3 | |
| 3id6_C | 232 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.3 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 99.3 | |
| 1wxx_A | 382 | TT1595, hypothetical protein TTHA1280; thermus the | 99.29 | |
| 2b25_A | 336 | Hypothetical protein; structural genomics, methyl | 99.29 | |
| 4dmg_A | 393 | Putative uncharacterized protein TTHA1493; rRNA, m | 99.29 | |
| 1xj5_A | 334 | Spermidine synthase 1; structural genomics, protei | 99.29 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 99.29 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 99.29 | |
| 3i53_A | 332 | O-methyltransferase; CO-complex, rossmann-like fol | 99.28 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 99.28 | |
| 1af7_A | 274 | Chemotaxis receptor methyltransferase CHER; chemot | 99.28 | |
| 3hp7_A | 291 | Hemolysin, putative; structural genomics, APC64019 | 99.28 | |
| 1x19_A | 359 | CRTF-related protein; methyltransferase, bacterioc | 99.28 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 99.28 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 99.28 | |
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 99.27 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 99.27 | |
| 2pt6_A | 321 | Spermidine synthase; transferase, structural genom | 99.27 | |
| 1tw3_A | 360 | COMT, carminomycin 4-O-methyltransferase; anthracy | 99.27 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 99.27 | |
| 3mq2_A | 218 | 16S rRNA methyltransferase; methyltranferase, ribo | 99.26 | |
| 2vdv_E | 246 | TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl | 99.26 | |
| 2qe6_A | 274 | Uncharacterized protein TFU_2867; putative methylt | 99.26 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 99.25 | |
| 2ip2_A | 334 | Probable phenazine-specific methyltransferase; pyo | 99.25 | |
| 2o07_A | 304 | Spermidine synthase; structural genomics, structur | 99.25 | |
| 1zq9_A | 285 | Probable dimethyladenosine transferase; SGC, struc | 99.24 | |
| 2b2c_A | 314 | Spermidine synthase; beta-alpha, transferase; 2.50 | 99.24 | |
| 3p2e_A | 225 | 16S rRNA methylase; methyltransferase, transferase | 99.24 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 99.23 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 99.23 | |
| 2qm3_A | 373 | Predicted methyltransferase; putative methyltransf | 99.23 | |
| 3tm4_A | 373 | TRNA (guanine N2-)-methyltransferase TRM14; rossma | 99.23 | |
| 3gjy_A | 317 | Spermidine synthase; APC62791, structural genomics | 99.22 | |
| 1uir_A | 314 | Polyamine aminopropyltransferase; spermidien synth | 99.22 | |
| 2bm8_A | 236 | Cephalosporin hydroxylase CMCI; cephamycin biosynt | 99.22 | |
| 1ne2_A | 200 | Hypothetical protein TA1320; structural genomics, | 99.22 | |
| 2i7c_A | 283 | Spermidine synthase; transferase, structural genom | 99.22 | |
| 3q87_B | 170 | N6 adenine specific DNA methylase; SAM-methyltrans | 99.21 | |
| 3m6w_A | 464 | RRNA methylase; rRNA methyltransferase, 5-methylcy | 99.21 | |
| 3m4x_A | 456 | NOL1/NOP2/SUN family protein; mtase domain, PUA do | 99.2 | |
| 1r18_A | 227 | Protein-L-isoaspartate(D-aspartate)-O-methyltrans; | 99.2 | |
| 3lcv_B | 281 | Sisomicin-gentamicin resistance methylase SGM; ant | 99.2 | |
| 3opn_A | 232 | Putative hemolysin; structural genomics, PSI-2, pr | 99.2 | |
| 3frh_A | 253 | 16S rRNA methylase; methyltransferase domain, heli | 99.19 | |
| 3ldu_A | 385 | Putative methylase; structural genomics, PSI-2, pr | 99.19 | |
| 2oxt_A | 265 | Nucleoside-2'-O-methyltransferase; flavivirus, vir | 99.18 | |
| 3ldg_A | 384 | Putative uncharacterized protein SMU.472; YPSC, me | 99.18 | |
| 2jjq_A | 425 | Uncharacterized RNA methyltransferase pyrab10780; | 99.18 | |
| 3k0b_A | 393 | Predicted N6-adenine-specific DNA methylase; methy | 99.18 | |
| 2frx_A | 479 | Hypothetical protein YEBU; rossmann-type S-adenosy | 99.17 | |
| 3axs_A | 392 | Probable N(2),N(2)-dimethylguanosine tRNA methylt | 99.16 | |
| 2wa2_A | 276 | Non-structural protein 5; transferase, S-adenosyl- | 99.16 | |
| 2yxl_A | 450 | PH0851 protein, 450AA long hypothetical FMU protei | 99.15 | |
| 3dou_A | 191 | Ribosomal RNA large subunit methyltransferase J; c | 99.15 | |
| 2h1r_A | 299 | Dimethyladenosine transferase, putative; SGC toron | 99.14 | |
| 3lst_A | 348 | CALO1 methyltransferase; calicheamicin, enediyne, | 99.13 | |
| 3sso_A | 419 | Methyltransferase; macrolide, natural product, ros | 99.13 | |
| 4azs_A | 569 | Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15 | 99.12 | |
| 2cmg_A | 262 | Spermidine synthase; transferase, putrescine amino | 99.12 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 99.12 | |
| 1uwv_A | 433 | 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m | 99.12 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 99.11 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 99.11 | |
| 2plw_A | 201 | Ribosomal RNA methyltransferase, putative; malaria | 99.1 | |
| 2p41_A | 305 | Type II methyltransferase; vizier, viral enzymes i | 99.1 | |
| 1sqg_A | 429 | SUN protein, FMU protein; rossmann-fold, mixed bet | 99.1 | |
| 2dul_A | 378 | N(2),N(2)-dimethylguanosine tRNA methyltransferas; | 99.08 | |
| 3giw_A | 277 | Protein of unknown function DUF574; rossmann-fold | 99.05 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 99.04 | |
| 2qfm_A | 364 | Spermine synthase; spermidine aminopropyltransfera | 99.03 | |
| 3gru_A | 295 | Dimethyladenosine transferase; rossman fold, ribos | 99.02 | |
| 2b9e_A | 309 | NOL1/NOP2/SUN domain family, member 5 isoform 2; m | 99.01 | |
| 3bt7_A | 369 | TRNA (uracil-5-)-methyltransferase; methyluridine, | 99.01 | |
| 4a6d_A | 353 | Hydroxyindole O-methyltransferase; melatonin, circ | 99.0 | |
| 3reo_A | 368 | (ISO)eugenol O-methyltransferase; directed evoluti | 98.99 | |
| 2xyq_A | 290 | Putative 2'-O-methyl transferase; transferase-vira | 98.99 | |
| 2f8l_A | 344 | Hypothetical protein LMO1582; structural genomics, | 98.99 | |
| 3p9c_A | 364 | Caffeic acid O-methyltransferase; S-adenosylmethio | 98.98 | |
| 2ih2_A | 421 | Modification methylase TAQI; DNA, DNA methyltransf | 98.96 | |
| 1fp1_D | 372 | Isoliquiritigenin 2'-O-methyltransferase; protein- | 98.93 | |
| 3tqs_A | 255 | Ribosomal RNA small subunit methyltransferase A; p | 98.92 | |
| 3fut_A | 271 | Dimethyladenosine transferase; methyltransferase, | 98.92 | |
| 2okc_A | 445 | Type I restriction enzyme stysji M protein; NP_813 | 98.91 | |
| 1qam_A | 244 | ERMC' methyltransferase; rRNA methyltransferase ER | 98.89 | |
| 1yub_A | 245 | Ermam, rRNA methyltransferase; MLS antibiotics; NM | 98.86 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 98.85 | |
| 3cvo_A | 202 | Methyltransferase-like protein of unknown functio; | 98.85 | |
| 3ll7_A | 410 | Putative methyltransferase; methytransferase, stru | 98.84 | |
| 1fp2_A | 352 | Isoflavone O-methyltransferase; protein-product co | 98.83 | |
| 2r6z_A | 258 | UPF0341 protein in RSP 3' region; alpha-beta prote | 98.83 | |
| 3uzu_A | 279 | Ribosomal RNA small subunit methyltransferase A; s | 98.78 | |
| 1zg3_A | 358 | Isoflavanone 4'-O-methyltransferase; rossman fold, | 98.77 | |
| 1m6y_A | 301 | S-adenosyl-methyltransferase MRAW; SAM-dependent m | 98.76 | |
| 3ftd_A | 249 | Dimethyladenosine transferase; KSGA, rossmann-like | 98.76 | |
| 2ld4_A | 176 | Anamorsin; methyltransferase-like fold, alpha/beta | 98.75 | |
| 3o4f_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 98.7 | |
| 2oyr_A | 258 | UPF0341 protein YHIQ; alpha-beta protein, structur | 98.66 | |
| 1qyr_A | 252 | KSGA, high level kasugamycin resistance protein, S | 98.64 | |
| 2ar0_A | 541 | M.ecoki, type I restriction enzyme ecoki M protein | 98.5 | |
| 3evf_A | 277 | RNA-directed RNA polymerase NS5; NS5 methyltransfe | 98.41 | |
| 2wk1_A | 282 | NOVP; transferase, O-methyltransferase, novobiocin | 98.4 | |
| 3khk_A | 544 | Type I restriction-modification system methylation | 98.33 | |
| 3lkd_A | 542 | Type I restriction-modification system methyltrans | 98.28 | |
| 3c6k_A | 381 | Spermine synthase; spermidine aminopropyltransfera | 98.26 | |
| 3p8z_A | 267 | Mtase, non-structural protein 5; methyltransferase | 98.25 | |
| 3gcz_A | 282 | Polyprotein; flavivirus, RNA capping, methyltransf | 98.23 | |
| 2qy6_A | 257 | UPF0209 protein YFCK; structural genomics, unknown | 98.23 | |
| 4fzv_A | 359 | Putative methyltransferase NSUN4; mterf fold, meth | 98.2 | |
| 3s1s_A | 878 | Restriction endonuclease bpusi; PD--(D/E)XK cataly | 98.12 | |
| 4auk_A | 375 | Ribosomal RNA large subunit methyltransferase M; Y | 98.08 | |
| 3lkz_A | 321 | Non-structural protein 5; flavivirus, methyltransf | 98.05 | |
| 3eld_A | 300 | Methyltransferase; flavivirus, RNA capping, guanyl | 97.97 | |
| 1wg8_A | 285 | Predicted S-adenosylmethionine-dependent methyltra | 97.96 | |
| 2px2_A | 269 | Genome polyprotein [contains: capsid protein C (co | 97.91 | |
| 2k4m_A | 153 | TR8_protein, UPF0146 protein MTH_1000; alpha+beta, | 97.88 | |
| 3r24_A | 344 | NSP16, 2'-O-methyl transferase; methyltransferase, | 97.75 | |
| 3b5i_A | 374 | S-adenosyl-L-methionine:salicylic acid carboxyl me | 97.75 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 97.7 | |
| 3ufb_A | 530 | Type I restriction-modification system methyltran | 97.27 | |
| 2efj_A | 384 | 3,7-dimethylxanthine methyltransferase; SAM-depend | 97.26 | |
| 2oo3_A | 283 | Protein involved in catabolism of external DNA; st | 97.21 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 97.08 | |
| 1i4w_A | 353 | Mitochondrial replication protein MTF1; mitochondr | 97.03 | |
| 1m6e_X | 359 | S-adenosyl-L-methionnine:salicylic acid carboxyl m | 96.86 | |
| 3tka_A | 347 | Ribosomal RNA small subunit methyltransferase H; H | 96.75 | |
| 3g7u_A | 376 | Cytosine-specific methyltransferase; DNA-binding, | 96.59 | |
| 2c7p_A | 327 | Modification methylase HHAI; DNA methyltransferase | 96.55 | |
| 1g55_A | 343 | DNA cytosine methyltransferase DNMT2; human DNA me | 96.53 | |
| 1rjd_A | 334 | PPM1P, carboxy methyl transferase for protein phos | 96.39 | |
| 1f8f_A | 371 | Benzyl alcohol dehydrogenase; rossmann fold, oxido | 95.92 | |
| 2py6_A | 409 | Methyltransferase FKBM; YP_546752.1, structural ge | 95.83 | |
| 3ubt_Y | 331 | Modification methylase HAEIII; protein-DNA complex | 95.45 | |
| 3ip1_A | 404 | Alcohol dehydrogenase, zinc-containing; structural | 95.26 | |
| 2uyo_A | 310 | Hypothetical protein ML2640; putative methyltransf | 95.19 | |
| 3vyw_A | 308 | MNMC2; tRNA wobble uridine, modification enzyme, g | 95.17 | |
| 3m6i_A | 363 | L-arabinitol 4-dehydrogenase; medium chain dehydro | 95.08 | |
| 3fpc_A | 352 | NADP-dependent alcohol dehydrogenase; oxydoreducta | 95.06 | |
| 2dph_A | 398 | Formaldehyde dismutase; dismutation of aldehydes, | 94.92 | |
| 4ej6_A | 370 | Putative zinc-binding dehydrogenase; structural ge | 94.9 | |
| 3tos_A | 257 | CALS11; methyltransferase, calicheamicin, structur | 94.86 | |
| 3two_A | 348 | Mannitol dehydrogenase; cinnamyl-alcohol dehydroge | 94.84 | |
| 1pl8_A | 356 | Human sorbitol dehydrogenase; NAD, oxidoreductase; | 94.79 | |
| 3qv2_A | 327 | 5-cytosine DNA methyltransferase; DNMT2, ehmeth; H | 94.74 | |
| 3goh_A | 315 | Alcohol dehydrogenase, zinc-containing; NP_718042. | 94.57 | |
| 2qrv_A | 295 | DNA (cytosine-5)-methyltransferase 3A; DNA methylt | 94.53 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 94.46 | |
| 1kol_A | 398 | Formaldehyde dehydrogenase; oxidoreductase; HET: N | 94.39 | |
| 3uko_A | 378 | Alcohol dehydrogenase class-3; alcohol dehydrogena | 94.39 | |
| 3s2e_A | 340 | Zinc-containing alcohol dehydrogenase superfamily; | 94.35 | |
| 1uuf_A | 369 | YAHK, zinc-type alcohol dehydrogenase-like protein | 94.09 | |
| 4h0n_A | 333 | DNMT2; SAH binding, transferase; HET: SAH; 2.71A { | 94.05 | |
| 1p0f_A | 373 | NADP-dependent alcohol dehydrogenase; ADH topology | 93.9 | |
| 3gms_A | 340 | Putative NADPH:quinone reductase; structural genom | 93.8 | |
| 3uog_A | 363 | Alcohol dehydrogenase; structural genomics, protei | 93.7 | |
| 2d8a_A | 348 | PH0655, probable L-threonine 3-dehydrogenase; pyro | 93.68 | |
| 4dvj_A | 363 | Putative zinc-dependent alcohol dehydrogenase Pro; | 93.62 | |
| 1cdo_A | 374 | Alcohol dehydrogenase; oxidoreductase, oxidoreduct | 93.62 | |
| 1e3i_A | 376 | Alcohol dehydrogenase, class II; HET: NAD; 2.08A { | 93.58 | |
| 2fzw_A | 373 | Alcohol dehydrogenase class III CHI chain; S-nitro | 93.45 | |
| 1vj0_A | 380 | Alcohol dehydrogenase, zinc-containing; TM0436, st | 93.36 | |
| 3jv7_A | 345 | ADH-A; dehydrogenase, nucleotide binding, rossmann | 93.17 | |
| 1piw_A | 360 | Hypothetical zinc-type alcohol dehydrogenase- like | 93.11 | |
| 1pqw_A | 198 | Polyketide synthase; rossmann fold, dimer, structu | 92.98 | |
| 2dq4_A | 343 | L-threonine 3-dehydrogenase; NAD-dependent, oxidor | 92.97 | |
| 1e3j_A | 352 | NADP(H)-dependent ketose reductase; oxidoreductase | 92.91 | |
| 3fbg_A | 346 | Putative arginate lyase; structural genomics, unkn | 92.8 | |
| 3jyn_A | 325 | Quinone oxidoreductase; rossmann fold, protein-NAD | 92.79 | |
| 2jhf_A | 374 | Alcohol dehydrogenase E chain; oxidoreductase, met | 92.68 | |
| 3pvc_A | 689 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 92.63 | |
| 1v3u_A | 333 | Leukotriene B4 12- hydroxydehydrogenase/prostaglan | 92.24 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 92.11 | |
| 4a2c_A | 346 | Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc | 92.07 | |
| 2hcy_A | 347 | Alcohol dehydrogenase 1; tetramer of asymmetric di | 91.85 | |
| 3qwb_A | 334 | Probable quinone oxidoreductase; rossmann fold, qu | 91.8 | |
| 4eye_A | 342 | Probable oxidoreductase; structural genomics, niai | 91.63 | |
| 1rjw_A | 339 | ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD | 91.62 | |
| 3oig_A | 266 | Enoyl-[acyl-carrier-protein] reductase [NADH]; fat | 91.58 | |
| 4b7c_A | 336 | Probable oxidoreductase; NADP cofactor, rossmann f | 91.51 | |
| 3ps9_A | 676 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 91.45 | |
| 4fn4_A | 254 | Short chain dehydrogenase; NADH-binding, rossmann | 91.26 | |
| 3me5_A | 482 | Cytosine-specific methyltransferase; structural ge | 91.2 | |
| 2b5w_A | 357 | Glucose dehydrogenase; nucleotide binding motif, o | 91.08 | |
| 4g81_D | 255 | Putative hexonate dehydrogenase; enzyme function i | 91.07 | |
| 3tqh_A | 321 | Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella | 91.06 | |
| 4eez_A | 348 | Alcohol dehydrogenase 1; site-saturation mutagenes | 90.99 | |
| 4dup_A | 353 | Quinone oxidoreductase; PSI-biology, structural ge | 90.77 | |
| 2eih_A | 343 | Alcohol dehydrogenase; zinc ION binding protein, s | 90.75 | |
| 1iz0_A | 302 | Quinone oxidoreductase; APO-enzyme, riken structur | 90.3 | |
| 2j3h_A | 345 | NADP-dependent oxidoreductase P1; double bond redu | 90.28 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 90.27 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 89.99 | |
| 1yb5_A | 351 | Quinone oxidoreductase; medium-chain dehydrogenase | 89.75 | |
| 3jyo_A | 283 | Quinate/shikimate dehydrogenase; enzyme-cofactor c | 89.73 | |
| 3gaz_A | 343 | Alcohol dehydrogenase superfamily protein; oxidore | 89.35 | |
| 2h6e_A | 344 | ADH-4, D-arabinose 1-dehydrogenase; rossman fold, | 89.3 | |
| 1qor_A | 327 | Quinone oxidoreductase; HET: NAP; 2.20A {Escherich | 89.24 | |
| 3nx4_A | 324 | Putative oxidoreductase; csgid, structural genomic | 89.21 | |
| 2c0c_A | 362 | Zinc binding alcohol dehydrogenase, domain contain | 89.01 | |
| 3lyl_A | 247 | 3-oxoacyl-(acyl-carrier-protein) reductase; alpha | 88.96 | |
| 1jvb_A | 347 | NAD(H)-dependent alcohol dehydrogenase; archaeon, | 88.87 | |
| 1pjc_A | 361 | Protein (L-alanine dehydrogenase); oxidoreductase, | 88.71 | |
| 3krt_A | 456 | Crotonyl COA reductase; structural genomics, prote | 88.43 | |
| 3iei_A | 334 | Leucine carboxyl methyltransferase 1; LCMT-1, S-ad | 88.37 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 88.36 | |
| 1zsy_A | 357 | Mitochondrial 2-enoyl thioester reductase; medium- | 88.29 | |
| 1eg2_A | 319 | Modification methylase RSRI; rossmann fold, exocyc | 88.0 | |
| 3ucx_A | 264 | Short chain dehydrogenase; ssgcid, seattle structu | 87.65 | |
| 2vn8_A | 375 | Reticulon-4-interacting protein 1; mitochondrion, | 87.57 | |
| 3swr_A | 1002 | DNA (cytosine-5)-methyltransferase 1; epigenetics, | 87.5 | |
| 3tjr_A | 301 | Short chain dehydrogenase; structural genomics, se | 87.29 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 87.25 | |
| 3ioy_A | 319 | Short-chain dehydrogenase/reductase SDR; structura | 87.18 | |
| 1gu7_A | 364 | Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s | 87.12 | |
| 1wly_A | 333 | CAAR, 2-haloacrylate reductase; NADPH-dependent ox | 87.09 | |
| 1wma_A | 276 | Carbonyl reductase [NADPH] 1; oxidoreductase; HET: | 86.9 | |
| 4hp8_A | 247 | 2-deoxy-D-gluconate 3-dehydrogenase; enzyme functi | 86.9 | |
| 3h7a_A | 252 | Short chain dehydrogenase; oxidoreductase, PSI-2, | 86.7 | |
| 3ado_A | 319 | Lambda-crystallin; L-gulonate 3-dehydrogenase, str | 86.47 | |
| 2j8z_A | 354 | Quinone oxidoreductase; medium-chain dehydrogenase | 86.46 | |
| 1f0y_A | 302 | HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive | 86.45 | |
| 3rkr_A | 262 | Short chain oxidoreductase; rossmann fold; HET: NA | 86.38 | |
| 3gaf_A | 256 | 7-alpha-hydroxysteroid dehydrogenase; seattle stru | 86.19 | |
| 3qiv_A | 253 | Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR | 86.11 | |
| 3o8q_A | 281 | Shikimate 5-dehydrogenase I alpha; structural geno | 86.07 | |
| 2vhw_A | 377 | Alanine dehydrogenase; NAD, secreted, oxidoreducta | 86.05 | |
| 1xg5_A | 279 | ARPG836; short chain dehydrogenase, human, SGC, st | 86.02 | |
| 3ius_A | 286 | Uncharacterized conserved protein; APC63810, silic | 85.98 | |
| 3o38_A | 266 | Short chain dehydrogenase; tuberculosis, ortholog | 85.94 | |
| 4ft4_B | 784 | DNA (cytosine-5)-methyltransferase 1; chromodomain | 85.93 | |
| 3v8b_A | 283 | Putative dehydrogenase, possibly 3-oxoacyl-[acyl- | 85.63 | |
| 3lf2_A | 265 | Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross | 85.44 | |
| 3rku_A | 287 | Oxidoreductase YMR226C; substrate fingerprint, sho | 85.23 | |
| 2dpo_A | 319 | L-gulonate 3-dehydrogenase; structural genomics, N | 85.04 | |
| 2cdc_A | 366 | Glucose dehydrogenase glucose 1-dehydrogenase, DHG | 85.04 | |
| 3nyw_A | 250 | Putative oxidoreductase; fatty acid synthesis,3-ox | 85.02 | |
| 4f3n_A | 432 | Uncharacterized ACR, COG1565 superfamily; structur | 84.91 | |
| 3sju_A | 279 | Keto reductase; short-chain dehydrogenase, oxidore | 84.44 | |
| 3svt_A | 281 | Short-chain type dehydrogenase/reductase; ssgcid, | 84.41 | |
| 3rd5_A | 291 | Mypaa.01249.C; ssgcid, structural genomics, seattl | 84.32 | |
| 4a0s_A | 447 | Octenoyl-COA reductase/carboxylase; oxidoreductase | 84.31 | |
| 1zcj_A | 463 | Peroxisomal bifunctional enzyme; peroxisomal multi | 84.14 | |
| 3imf_A | 257 | Short chain dehydrogenase; structural genomics, in | 84.0 | |
| 3t4x_A | 267 | Oxidoreductase, short chain dehydrogenase/reducta; | 83.75 | |
| 1yb1_A | 272 | 17-beta-hydroxysteroid dehydrogenase type XI; shor | 83.72 | |
| 3tfo_A | 264 | Putative 3-oxoacyl-(acyl-carrier-protein) reducta; | 83.7 | |
| 3pgx_A | 280 | Carveol dehydrogenase; structural genomics, seattl | 83.67 | |
| 4dry_A | 281 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 83.62 | |
| 3r1i_A | 276 | Short-chain type dehydrogenase/reductase; structur | 83.61 | |
| 4da9_A | 280 | Short-chain dehydrogenase/reductase; structural ge | 83.5 | |
| 1jw9_B | 249 | Molybdopterin biosynthesis MOEB protein; MOEB: mod | 83.46 | |
| 4fgs_A | 273 | Probable dehydrogenase protein; PSI-biology, nysgr | 83.37 | |
| 1iy8_A | 267 | Levodione reductase; oxidoreductase; HET: NAD; 1.6 | 83.21 | |
| 2eez_A | 369 | Alanine dehydrogenase; TTHA0216, structural genomi | 83.2 | |
| 4fs3_A | 256 | Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; | 82.91 | |
| 3av4_A | 1330 | DNA (cytosine-5)-methyltransferase 1; CXXC-type zi | 82.62 | |
| 2jah_A | 247 | Clavulanic acid dehydrogenase; short-chain dehydro | 82.59 | |
| 1e7w_A | 291 | Pteridine reductase; dihydrofolate reductase, shor | 82.59 | |
| 3pk0_A | 262 | Short-chain dehydrogenase/reductase SDR; ssgcid, s | 82.55 | |
| 1eg2_A | 319 | Modification methylase RSRI; rossmann fold, exocyc | 82.37 | |
| 3o26_A | 311 | Salutaridine reductase; short chain dehydrogenase/ | 82.16 | |
| 3awd_A | 260 | GOX2181, putative polyol dehydrogenase; oxidoreduc | 82.15 | |
| 3f9i_A | 249 | 3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto | 82.12 | |
| 3ftp_A | 270 | 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid | 82.08 | |
| 4e12_A | 283 | Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1 | 82.08 | |
| 1zkd_A | 387 | DUF185; NESG, RPR58, structural genomics, PSI, pro | 82.07 | |
| 4imr_A | 275 | 3-oxoacyl-(acyl-carrier-protein) reductase; oxidor | 82.04 | |
| 3ijr_A | 291 | Oxidoreductase, short chain dehydrogenase/reducta; | 81.94 | |
| 3tsc_A | 277 | Putative oxidoreductase; structural genomics, seat | 81.86 | |
| 3ggo_A | 314 | Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b | 81.85 | |
| 1ae1_A | 273 | Tropinone reductase-I; oxidoreductase, tropane alk | 81.81 | |
| 3p2y_A | 381 | Alanine dehydrogenase/pyridine nucleotide transhy; | 81.57 | |
| 2rhc_B | 277 | Actinorhodin polyketide ketoreductase; oxidoreduct | 81.52 | |
| 3gqv_A | 371 | Enoyl reductase; medium-chain reductase (MDR super | 81.38 | |
| 3h8v_A | 292 | Ubiquitin-like modifier-activating enzyme 5; rossm | 81.35 | |
| 1zem_A | 262 | Xylitol dehydrogenase; rossmann fold, dinucleotide | 81.26 | |
| 4egf_A | 266 | L-xylulose reductase; structural genomics, ssgcid, | 81.17 | |
| 3pwz_A | 272 | Shikimate dehydrogenase 3; alpha-beta, oxidoreduct | 81.11 | |
| 4iin_A | 271 | 3-ketoacyl-acyl carrier protein reductase (FABG); | 80.93 | |
| 3k6j_A | 460 | Protein F01G10.3, confirmed by transcript evidenc; | 80.41 | |
| 2qhx_A | 328 | Pteridine reductase 1; oxidoreductase, short-chain | 80.4 | |
| 4ibo_A | 271 | Gluconate dehydrogenase; enzyme function initiativ | 80.37 | |
| 4eso_A | 255 | Putative oxidoreductase; NADP, structural genomics | 80.33 | |
| 4dio_A | 405 | NAD(P) transhydrogenase subunit alpha PART 1; stru | 80.23 | |
| 2ae2_A | 260 | Protein (tropinone reductase-II); oxidoreductase, | 80.21 | |
| 3ppi_A | 281 | 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de | 80.2 |
| >4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-62 Score=471.03 Aligned_cols=326 Identities=37% Similarity=0.593 Sum_probs=277.3
Q ss_pred ccccchhhhhhhhhhhhhHhhcCChHhHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEechHHHHH
Q 016351 36 KEVDFANYFCTYAFLYHQKEMLSDRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEATKMSDH 115 (391)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~ml~d~~r~~~~~~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s~~~~~ 115 (391)
....+..||++|+++..|+.||+|..|+.+|+++|.++...+++++|||||||+|+|++++|++|+++|+|||.|+|++.
T Consensus 41 ~~~~d~~Yf~sY~~~~iH~~ML~D~~Rt~aY~~Ai~~~~~~~~~k~VLDvG~GtGiLs~~Aa~aGA~~V~ave~s~~~~~ 120 (376)
T 4hc4_A 41 KRERDQLYYECYSDVSVHEEMIADRVRTDAYRLGILRNWAALRGKTVLDVGAGTGILSIFCAQAGARRVYAVEASAIWQQ 120 (376)
T ss_dssp --------CCCHHHHHHHHHHHHCHHHHHHHHHHHHTTHHHHTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTTHHH
T ss_pred cccchhhhhhhccCcHHHHHHhCCHHHHHHHHHHHHhCHHhcCCCEEEEeCCCccHHHHHHHHhCCCEEEEEeChHHHHH
Confidence 34566789999999999999999999999999999887666789999999999999999999999999999999988999
Q ss_pred HHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcccceeEEeecccC
Q 016351 116 ARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHARMWVAPIRSG 195 (391)
Q Consensus 116 a~~~~~~~~~~~~v~~i~~d~~~~~~~~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~~~~~~~~~~~~ 195 (391)
|+++++.|++.++|+++++|++++.+|+++|+||||++++++.+|.+++.+++++.|+|+|||++||+.+++|++|+++.
T Consensus 121 a~~~~~~n~~~~~i~~i~~~~~~~~lpe~~DvivsE~~~~~l~~e~~l~~~l~a~~r~Lkp~G~~iP~~atly~apie~~ 200 (376)
T 4hc4_A 121 AREVVRFNGLEDRVHVLPGPVETVELPEQVDAIVSEWMGYGLLHESMLSSVLHARTKWLKEGGLLLPASAELFIVPISDQ 200 (376)
T ss_dssp HHHHHHHTTCTTTEEEEESCTTTCCCSSCEEEEECCCCBTTBTTTCSHHHHHHHHHHHEEEEEEEESCEEEEEEEEECCH
T ss_pred HHHHHHHcCCCceEEEEeeeeeeecCCccccEEEeecccccccccchhhhHHHHHHhhCCCCceECCccceEEEEEeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999863
Q ss_pred cCccchhhccccccchhhhhhcCccccccccccCCCcchhhhhhhhcccCceeecCCCCccccceeEEEEEcCCCCcccc
Q 016351 196 LGDQKQQDYEGALDDWYSFLKETKTYYGVDMSVLTKPFSEEQKKYYLQTSLWSNLHPDQVIGTAAVVKNIDCSTATVDDI 275 (391)
Q Consensus 196 ~~~~~~~~~~~~~~~w~~~~~~~~~~~g~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~p~~~~~~dl~~~~~~~~ 275 (391)
.. ...+.+|... ...|||||+++....... .....++.++.+.+.+++++|+.+++|||.++..++.
T Consensus 201 ~l-------~~~i~~w~~v----~~~yGfd~s~~~~~~~~~--~~~~~e~~v~~~~~~~~Ls~p~~i~~~D~~~~~~~~~ 267 (376)
T 4hc4_A 201 ML-------EWRLGFWSQV----KQHYGVDMSCLEGFATRC--LMGHSEIVVQGLSGEDVLARPQRFAQLELSRAGLEQE 267 (376)
T ss_dssp HH-------HHHHHGGGGH----HHHHSCCCGGGHHHHHHH--HHSSCEEEEECCCGGGBCSCCEEEEEEETTCTTHHHH
T ss_pred hh-------hhhhcchhcc----ccccCcCchhhhhhhhhh--hcccCceEEEeecccccccCCEEEEEEECCCCCcccc
Confidence 21 2334567532 345999999984322111 1111357788888889999999999999999876532
Q ss_pred c--ceeeEEEEEEEecCceeEEEEEEEEeeecCCCCCCCCCcEEEecCCCCCCCCCccceEEecCCccccCCCCEEEEEE
Q 016351 276 R--EVRSKFLSSIRGEGTRLCGFSGWFDVHFRGSTEDPAQQEIELTTAPSTYNGTHWGQQVFLFRPSVRVSEGDDLNVSF 353 (391)
Q Consensus 276 ~--~~~~~~~~~~~~~~g~~~g~~~wf~~~l~~~~~~~~~~~i~lst~P~~~~~~hW~q~~~~l~~p~~v~~g~~l~~~~ 353 (391)
. .+...|++++. ++|++|||++||++.|++.. .+.++.|||+| ..+.|||+|++|+|++|+.|++||+|++++
T Consensus 268 ~~~~~~~~f~~~~~-~~g~vhg~~~WFd~~f~~~~---~~~~v~lST~P-~~~~THW~Q~v~~L~~Pi~V~~G~~I~g~i 342 (376)
T 4hc4_A 268 LEAGVGGRFRCSCY-GSAPMHGFAIWFQVTFPGGE---SEKPLVLSTSP-FHPATHWKQALLYLNEPVQVEQDTDVSGEI 342 (376)
T ss_dssp HHHCEEEEEEEECC-SSEEEEEEEEEEEEEECCCC-----CCEEEECCT-TSCCCTTCEEEEEEEEEEEECTTCEEEEEE
T ss_pred ccccceeEEEEEec-CCcEEEEEEEEEEEEecCCC---CCCceEEeCCC-CcCCCceeeEEEEeCCceEeCCCCEEEEEE
Confidence 1 45667888888 99999999999999996531 14579999999 588999999999999999999999999999
Q ss_pred EEEeCCCCCeeeEEEEEEEEeccccc
Q 016351 354 SMTRSKENHRLLEVEFSCEIRESTGQ 379 (391)
Q Consensus 354 ~~~~~~~~~r~~~~~~~~~~~~~~~~ 379 (391)
.+.++.+|+|.|+|+++|.+.+..++
T Consensus 343 ~~~~~~~n~R~~~i~i~~~~~~~~~~ 368 (376)
T 4hc4_A 343 TLLPSRDNPRRLRVLLRYKVGDQEEK 368 (376)
T ss_dssp EEEECSSCTTSEEEEEEEEETTSCCE
T ss_pred EEEECCCCCceeEEEEEEEeCCCCcc
Confidence 99999999999999999999887654
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-59 Score=452.68 Aligned_cols=356 Identities=72% Similarity=1.225 Sum_probs=310.5
Q ss_pred cccccchhhhhhhhhhhhhHhhcCChHhHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEechHHHH
Q 016351 35 DKEVDFANYFCTYAFLYHQKEMLSDRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEATKMSD 114 (391)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~ml~d~~r~~~~~~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s~~~~ 114 (391)
....+...||+.|+..|.+..|++|..|+..|.++|.......++++|||||||+|.+++.++++|+++|+|||+|+|++
T Consensus 20 ~~~~~~~~yf~~ya~~~~~~~~l~d~~r~~~~~~~i~~~~~~~~~~~VLDlGcGtG~ls~~la~~g~~~V~gvD~s~~~~ 99 (376)
T 3r0q_C 20 DKEVDYAQYFCTYSFLYHQKDMLSDRVRMDAYFNAVFQNKHHFEGKTVLDVGTGSGILAIWSAQAGARKVYAVEATKMAD 99 (376)
T ss_dssp --------CTTGGGCHHHHHHHHTCHHHHHHHHHHHHTTTTTTTTCEEEEESCTTTHHHHHHHHTTCSEEEEEESSTTHH
T ss_pred cccccHHHHHHHHHHhHHHHHHhcChHHHHHHHHHHHhccccCCCCEEEEeccCcCHHHHHHHhcCCCEEEEEccHHHHH
Confidence 34456678999999999999999999999999999998877788899999999999999999999988999999999999
Q ss_pred HHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcccceeEEeeccc
Q 016351 115 HARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHARMWVAPIRS 194 (391)
Q Consensus 115 ~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~~~~~~~~~~~ 194 (391)
.|+++++.+++.++|+++++|+.++.++++||+|+++++.+++..+.++..++.++.++|+|||+++|...+.+..|+..
T Consensus 100 ~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~Iv~~~~~~~l~~e~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~ 179 (376)
T 3r0q_C 100 HARALVKANNLDHIVEVIEGSVEDISLPEKVDVIISEWMGYFLLRESMFDSVISARDRWLKPTGVMYPSHARMWLAPIKS 179 (376)
T ss_dssp HHHHHHHHTTCTTTEEEEESCGGGCCCSSCEEEEEECCCBTTBTTTCTHHHHHHHHHHHEEEEEEEESSEEEEEEEEECC
T ss_pred HHHHHHHHcCCCCeEEEEECchhhcCcCCcceEEEEcChhhcccchHHHHHHHHHHHhhCCCCeEEEEecCeEEEEeecc
Confidence 99999999999999999999999998889999999999999998888899999999999999999999999999999976
Q ss_pred CcCccchhhccccccchhhhhhcCccccccccccCCCcchhhhhhhhcccCceeecCCCCccccceeEEEEEcCCCCccc
Q 016351 195 GLGDQKQQDYEGALDDWYSFLKETKTYYGVDMSVLTKPFSEEQKKYYLQTSLWSNLHPDQVIGTAAVVKNIDCSTATVDD 274 (391)
Q Consensus 195 ~~~~~~~~~~~~~~~~w~~~~~~~~~~~g~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~p~~~~~~dl~~~~~~~ 274 (391)
.........+...+..|..+..+..+.+|+|++.+.+.+..+...+++.+|.++.+++.+++++|+.+.++||.++..++
T Consensus 180 ~~~~~~~~~~~~~~~~W~~fw~~~~~~~G~d~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~lt~~~~~~~~d~~~~~~~~ 259 (376)
T 3r0q_C 180 NIADRKRNDFDGAMADWHNFSDEIKSYYGVDMGVLTKPFAEEQEKYYIQTAMWNDLNPQQIIGTPTIVKEMDCLTASVSE 259 (376)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCGGGHHHHHHHHHHHHTSBCEEECCCGGGBCBCCEEEEEEETTTCCGGG
T ss_pred hHHhhhhhhhhhhhhhhhhhhhccCccccCChHHHHhhhhhhhhhhcccCceEEEEChHHccCCCeEEEEEEcCcCCHHH
Confidence 53332223445556778777655568999999999765544444445678999999999999999999999999999988
Q ss_pred ccceeeEEEEEE-EecCceeEEEEEEEEeeecCCCCCCCCCcEEEecCCCCCCCCCccceEEecCCccccCCCCEEEEEE
Q 016351 275 IREVRSKFLSSI-RGEGTRLCGFSGWFDVHFRGSTEDPAQQEIELTTAPSTYNGTHWGQQVFLFRPSVRVSEGDDLNVSF 353 (391)
Q Consensus 275 ~~~~~~~~~~~~-~~~~g~~~g~~~wf~~~l~~~~~~~~~~~i~lst~P~~~~~~hW~q~~~~l~~p~~v~~g~~l~~~~ 353 (391)
++.+...|++++ . ++|.+|||++|||++|++....+.++++.|||+|...+.|||+|++|+|++|+.|++|++|.+++
T Consensus 260 l~~~~~~~~~~~~~-~~~~~~g~~~wfd~~~~~~~~~~~~~~v~lSt~P~~~~~thW~q~~~~l~~p~~v~~g~~i~~~~ 338 (376)
T 3r0q_C 260 IEEVRSNVTSVINM-EHTRLCGFGGWFDVQFSGRKEDPAQQEIELTTAPSEQHCTHWGQQVFIMSNPINVEEGDNLNLGL 338 (376)
T ss_dssp TSEEEEEEEEBCSC-SCEEEEEEEEEEEEEEEEETTEEEEEEEEEECCCCSSCCCTTCEEEEEEEEEEEECTTCEEEEEE
T ss_pred hcccccceEEEEec-cCceEEEEEEEEEEEecCCccCCCCCccEEECCCCcCCCCceeeEEEEECCceecCCCCEEEEEE
Confidence 855888999998 7 99999999999999997542223345799999995356899999999999999999999999999
Q ss_pred EEEeCCCCCeeeEEEEEEEEeccccccCCcccceeeeC
Q 016351 354 SMTRSKENHRLLEVEFSCEIRESTGQILPPIKNKFYIE 391 (391)
Q Consensus 354 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (391)
.+.++.+|+|.|+|+++|.+++++|+..|++.++|+||
T Consensus 339 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (376)
T 3r0q_C 339 LMSRSKENHRLMEIELNCEIKEASGNPKESFKKTYFIE 376 (376)
T ss_dssp EEEECSSCTTSEEEEEEEEEECSSSCCCCCEEEEEEEC
T ss_pred EEEECCCCCeeEEEEEEEEecCcCCCCCCCcceeEeeC
Confidence 99999999999999999999999999999999999998
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-52 Score=400.60 Aligned_cols=322 Identities=35% Similarity=0.641 Sum_probs=277.9
Q ss_pred cccchhhhhhhhhhhhhHhhcCChHhHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEechHHHHHH
Q 016351 37 EVDFANYFCTYAFLYHQKEMLSDRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEATKMSDHA 116 (391)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~ml~d~~r~~~~~~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s~~~~~a 116 (391)
......||+.|+....+..|++|..|+..|.++|.......++++|||||||+|.+++.++++|+.+|+|+|+|+|++.|
T Consensus 25 ~~~~~~yf~~y~~~~~~~~~l~d~~r~~~~~~~i~~~~~~~~~~~VLDvGcG~G~~~~~la~~g~~~v~gvD~s~~l~~a 104 (349)
T 3q7e_A 25 MTSKDYYFDSYAHFGIHEELLKDEVRTLTYRNSMFHNRHLFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSISDYA 104 (349)
T ss_dssp ------------CCHHHHHHHHCHHHHHHHHHHHHTCHHHHTTCEEEEESCTTSHHHHHHHHTTCSEEEEEECSTHHHHH
T ss_pred cchHHHHHHhhhhhHHHHHHhccHHHHHHHHHHHHhccccCCCCEEEEEeccchHHHHHHHHCCCCEEEEECcHHHHHHH
Confidence 34456799999999999999999999999999998765556789999999999999999999988899999999999999
Q ss_pred HHHHHHcCCCCcEEEEEcccccCCCC-CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcccceeEEeecccC
Q 016351 117 RTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHARMWVAPIRSG 195 (391)
Q Consensus 117 ~~~~~~~~~~~~v~~i~~d~~~~~~~-~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~~~~~~~~~~~~ 195 (391)
+++++.+++.++|+++++|+.+++++ ++||+|+++++++.+..+..+..++.++.++|+|||+++|...+.+..++...
T Consensus 105 ~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~~~~~~~~~~~ 184 (349)
T 3q7e_A 105 VKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGYCLFYESMLNTVLHARDKWLAPDGLIFPDRATLYVTAIEDR 184 (349)
T ss_dssp HHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCCBBTBTBTCCHHHHHHHHHHHEEEEEEEESCEEEEEEEEECCH
T ss_pred HHHHHHcCCCCcEEEEECcHHHccCCCCceEEEEEccccccccCchhHHHHHHHHHHhCCCCCEEccccceEEEeeecCh
Confidence 99999999999999999999999877 89999999999998888889999999999999999999999999999998653
Q ss_pred cCccchhhccccccchhhhhhcCccccccccccCCCcchhhhhhhhcccCceeecCCCCccccceeEEEEEcCCCCcccc
Q 016351 196 LGDQKQQDYEGALDDWYSFLKETKTYYGVDMSVLTKPFSEEQKKYYLQTSLWSNLHPDQVIGTAAVVKNIDCSTATVDDI 275 (391)
Q Consensus 196 ~~~~~~~~~~~~~~~w~~~~~~~~~~~g~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~p~~~~~~dl~~~~~~~~ 275 (391)
. .......+|. +++|+|++.+ +.....+|.++.+++..++++|+.+.++||.+...+++
T Consensus 185 ~------~~~~~~~~w~-------~~~G~d~~~~--------~~~~~~~p~v~~~~~~~~~~~~~~~~~~dl~~~~~~~l 243 (349)
T 3q7e_A 185 Q------YKDYKIHWWE-------NVYGFDMSCI--------KDVAIKEPLVDVVDPKQLVTNACLIKEVDIYTVKVEDL 243 (349)
T ss_dssp H------HHHHHTGGGG-------CBTTBCCGGG--------HHHHHTSCEEECCCGGGEEEEEEEEEEEETTTCCGGGG
T ss_pred h------hhhhhhcccc-------cccCcchHHH--------hHhhhcCcEEEEEChhhEecccEEEEEEEcccCchhhc
Confidence 1 1223456774 7899999988 33445678899999999999999999999999998888
Q ss_pred cceeeEEEEEEEecCceeEEEEEEEEeeecCCCCCCCCCcEEEecCCCCCCCCCccceEEecCCccccCCCCEEEEEEEE
Q 016351 276 REVRSKFLSSIRGEGTRLCGFSGWFDVHFRGSTEDPAQQEIELTTAPSTYNGTHWGQQVFLFRPSVRVSEGDDLNVSFSM 355 (391)
Q Consensus 276 ~~~~~~~~~~~~~~~g~~~g~~~wf~~~l~~~~~~~~~~~i~lst~P~~~~~~hW~q~~~~l~~p~~v~~g~~l~~~~~~ 355 (391)
.....|++++. ++|.+|||++|||+.|+++ ..++.|||+|. .+.|||+|++|+|++|+.|++|++|.+++.+
T Consensus 244 -~~~~~~~~~~~-~~~~~~g~~~~Fd~~~~~~-----~~~v~lst~P~-~~~thW~q~~~~l~~p~~v~~g~~i~~~~~~ 315 (349)
T 3q7e_A 244 -TFTSPFCLQVK-RNDYVHALVAYFNIEFTRC-----HKRTGFSTSPE-SPYTHWKQTVFYMEDYLTVKTGEEIFGTIGM 315 (349)
T ss_dssp -SEEEEEEEEBC-SSEEEEEEEEEEEEECTTS-----SSCCEEECSTT-SCCCTTCEEEEEEEEEEEECTTCEEEEEEEE
T ss_pred -ceeeeEEEEEc-cCCEEEEEEEEEEEEecCC-----CCccEEECCCC-cCCCcceeEEEEECCceEeCCCCEEEEEEEE
Confidence 68889999999 9999999999999999764 45799999994 7899999999999999999999999999999
Q ss_pred EeCCCCCeeeEEEEEEEEeccccccCCcccceee
Q 016351 356 TRSKENHRLLEVEFSCEIRESTGQILPPIKNKFY 389 (391)
Q Consensus 356 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (391)
.++.+|+|.++|+++|.+++..+.. +..+.|+
T Consensus 316 ~~~~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~ 347 (349)
T 3q7e_A 316 RPNAKNNRDLDFTIDLDFKGQLCEL--SCSTDYR 347 (349)
T ss_dssp EECSSCSSCEEEEEEEEEECSSCEE--EEEEEEE
T ss_pred EECCCCCeeEEEEEEEEeCCccccc--ccCceEe
Confidence 9999999999999999999988775 3445564
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-50 Score=386.97 Aligned_cols=310 Identities=33% Similarity=0.603 Sum_probs=273.3
Q ss_pred hhhhhhhhhhhhHhhcCChHhHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEechHHHHHHHHHHH
Q 016351 42 NYFCTYAFLYHQKEMLSDRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEATKMSDHARTLVK 121 (391)
Q Consensus 42 ~~~~~~~~~~~~~~ml~d~~r~~~~~~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s~~~~~a~~~~~ 121 (391)
.||+.|+....|..|++|..|+..|.++|.+.....++++|||||||+|.+++.++++|+.+|+|+|+++|++.|+++++
T Consensus 2 ~Yf~~y~~~~~~~~ml~d~~r~~~y~~ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~v~~vD~s~~~~~a~~~~~ 81 (328)
T 1g6q_1 2 YYFDSYDHYGIHEEMLQDTVRTLSYRNAIIQNKDLFKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSSIIEMAKELVE 81 (328)
T ss_dssp CCCCCCCCHHHHHHHHTCHHHHHHHHHHHHHHHHHHTTCEEEEETCTTSHHHHHHHHTCCSEEEEEESSTHHHHHHHHHH
T ss_pred chhhhhcCchHHHHHhcCHHHHHHHHHHHHhhHhhcCCCEEEEecCccHHHHHHHHHCCCCEEEEEChHHHHHHHHHHHH
Confidence 48999999999999999999999999999776656678999999999999999999998889999999988999999999
Q ss_pred HcCCCCcEEEEEcccccCCCC-CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcccceeEEeecccCcCccc
Q 016351 122 ANNLQDVVEVIEGSVEDIVLP-EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHARMWVAPIRSGLGDQK 200 (391)
Q Consensus 122 ~~~~~~~v~~i~~d~~~~~~~-~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~~~~~~~~~~~~~~~~~ 200 (391)
.+++.++|+++++|+.++.++ ++||+|+|+++++.+.++..+..++.++.++|+|||+++|...++++.++.+..
T Consensus 82 ~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~---- 157 (328)
T 1g6q_1 82 LNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIFPDKCSIHLAGLEDSQ---- 157 (328)
T ss_dssp HTTCTTTEEEEESCTTTSCCSSSCEEEEEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEESCEEEEEEEEECCHH----
T ss_pred HcCCCCCEEEEECchhhccCCCCcccEEEEeCchhhcccHHHHHHHHHHHHhhcCCCeEEEEeeceEEEEEecCch----
Confidence 999988999999999998877 899999999988888888888999999999999999999999999998886421
Q ss_pred hhhccccccchhhhhhcCccccccccccCCCcchhhhhhhhcccCceeecCCCCccccceeEEEEEcCCCCcccccceee
Q 016351 201 QQDYEGALDDWYSFLKETKTYYGVDMSVLTKPFSEEQKKYYLQTSLWSNLHPDQVIGTAAVVKNIDCSTATVDDIREVRS 280 (391)
Q Consensus 201 ~~~~~~~~~~w~~~~~~~~~~~g~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~p~~~~~~dl~~~~~~~~~~~~~ 280 (391)
.....+..| .+.+|++++.+ +......+.++.+++.+++++|+.++++||.++..+++ ....
T Consensus 158 --~~~~~~~~w-------~~~~gf~~~~~--------~~~~~~~~~v~~~~~~~~ls~~~~~~~~d~~~~~~~~~-~~~~ 219 (328)
T 1g6q_1 158 --YKDEKLNYW-------QDVYGFDYSPF--------VPLVLHEPIVDTVERNNVNTTSDKLIEFDLNTVKISDL-AFKS 219 (328)
T ss_dssp --HHHHHHHHT-------TCBTTBCCTTH--------HHHHTTSCEEECCCGGGBCBCCEEEEEEETTTCCGGGG-SEEE
T ss_pred --hhhhhhccc-------ccccCcChHHH--------hhhhhcCCeEEEeccceeecCCEEEEEEECCCCChhHh-ceee
Confidence 112234556 36789999877 23344568888888899999999999999999888877 6778
Q ss_pred EEEEEEEecCceeEEEEEEEEeeecCCCCCCCCCcEEEecCCCCCCCCCccceEEecCCccccCCCCEEEEEEEEEeCCC
Q 016351 281 KFLSSIRGEGTRLCGFSGWFDVHFRGSTEDPAQQEIELTTAPSTYNGTHWGQQVFLFRPSVRVSEGDDLNVSFSMTRSKE 360 (391)
Q Consensus 281 ~~~~~~~~~~g~~~g~~~wf~~~l~~~~~~~~~~~i~lst~P~~~~~~hW~q~~~~l~~p~~v~~g~~l~~~~~~~~~~~ 360 (391)
.|+++++ ++|++|||++|||++|++. +..+++.+||+|. .+.|||+|++|+|++|+.|++|++|++++.+.++.+
T Consensus 220 ~~~~~~~-~~g~~~g~~~wfd~~~~~~---~~~~~v~lst~P~-~~~thW~q~~~~l~~p~~v~~g~~i~~~~~~~~~~~ 294 (328)
T 1g6q_1 220 NFKLTAK-RQDMINGIVTWFDIVFPAP---KGKRPVEFSTGPH-APYTHWKQTIFYFPDDLDAETGDTIEGELVCSPNEK 294 (328)
T ss_dssp EEEEEBC-SSCEEEEEEEEEEEECCCC---TTSCCCEEECSTT-SCCCTTCEEEEEEEEEEECCTTCEEEEEEEEEEETT
T ss_pred eEEEEEe-cCcEEEEEEEEEEEEcCCC---CCCCceEEECCCC-cCCCcceeEEEEeCCceecCCCCEEEEEEEEEECCC
Confidence 8999988 9999999999999999651 0145799999995 788999999999999999999999999999999999
Q ss_pred CCeeeEEEEEEEEecccc
Q 016351 361 NHRLLEVEFSCEIRESTG 378 (391)
Q Consensus 361 ~~r~~~~~~~~~~~~~~~ 378 (391)
|+|.++|.++|.+++..+
T Consensus 295 ~~r~~~~~~~~~~~~~~~ 312 (328)
T 1g6q_1 295 NNRDLNIKISYKFESNGI 312 (328)
T ss_dssp EEEEEEEEEEEEEECCSS
T ss_pred CCceEEEEEEEEecCccC
Confidence 999999999999998765
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-48 Score=374.23 Aligned_cols=311 Identities=34% Similarity=0.632 Sum_probs=266.0
Q ss_pred ccccccchhhhhhhhhhhhhHhhcCChHhHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEechHHH
Q 016351 34 VDKEVDFANYFCTYAFLYHQKEMLSDRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEATKMS 113 (391)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~ml~d~~r~~~~~~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s~~~ 113 (391)
......+..||+.|+....+..|++|..|+..|.++|.+.+...++++|||||||+|.+++.+++.|+.+|+|+|+++|+
T Consensus 20 ~~~~~~d~~Y~~~y~~~~~~~~ml~d~~r~~~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~v~gvD~s~~~ 99 (340)
T 2fyt_A 20 DLQEDEDGVYFSSYGHYGIHEEMLKDKIRTESYRDFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEIL 99 (340)
T ss_dssp ----------CCGGGSHHHHHHHHTCHHHHHHHHHHHHHCGGGTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESSTHH
T ss_pred ccCccchhhHHHhhcchhHHHHHhcCHHHHHHHHHHHHhhhhhcCCCEEEEeeccCcHHHHHHHHcCCCEEEEEChHHHH
Confidence 34445566799999999999999999999999999999887777889999999999999999999988799999999889
Q ss_pred HHHHHHHHHcCCCCcEEEEEcccccCCCC-CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcccceeEEeec
Q 016351 114 DHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHARMWVAPI 192 (391)
Q Consensus 114 ~~a~~~~~~~~~~~~v~~i~~d~~~~~~~-~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~~~~~~~~~ 192 (391)
+.|+++++.+++.++++++++|+.++.++ ++||+|+++++++.+.++..+..++.++.++|+|||+++|..++.++.++
T Consensus 100 ~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~~~~~~~~ 179 (340)
T 2fyt_A 100 YQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVYPDICTISLVAV 179 (340)
T ss_dssp HHHHHHHHHTTCTTTEEEEESCTTTSCCSCSCEEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEESCEEEEEEEEE
T ss_pred HHHHHHHHHcCCCCcEEEEEeeHHHhcCCCCcEEEEEEcCchhhccCHHHHHHHHHHHHhhcCCCcEEEcccceEEEEEe
Confidence 99999999999988899999999998877 89999999998888888888899999999999999999999999999888
Q ss_pred ccCcCccchhhccccccchhhhhhcCccccccccccCCCcchhhhhhhhcccCceeecCCCCccccceeEEEEEcCCCCc
Q 016351 193 RSGLGDQKQQDYEGALDDWYSFLKETKTYYGVDMSVLTKPFSEEQKKYYLQTSLWSNLHPDQVIGTAAVVKNIDCSTATV 272 (391)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~g~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~p~~~~~~dl~~~~~ 272 (391)
.+.. ........|. +.+|++++.+. ...+..+.++.+.+..++++|+.+.++||.+...
T Consensus 180 ~~~~------~~~~~~~~w~-------~~~g~~~~~~~--------~~~~~~~~v~~~~~~~~ls~p~~~~~~d~~~~~~ 238 (340)
T 2fyt_A 180 SDVN------KHADRIAFWD-------DVYGFKMSCMK--------KAVIPEAVVEVLDPKTLISEPCGIKHIDCHTTSI 238 (340)
T ss_dssp CCHH------HHHHHTGGGG-------CBTTBCCGGGH--------HHHTTBCEEECCCGGGBCBCCEEEEEEETTTCCG
T ss_pred cchh------Hhhhhhcccc-------cccCcChHHHH--------HhhhcCcEEEEechhhcccCCEEEEEEECCCCcc
Confidence 5421 1123345673 78899988772 3334567788778888999999999999999887
Q ss_pred ccccceeeEEEEEEEecCceeEEEEEEEEeeec-CCCCCCCCCcEEEecCCCCCCCCCccceEEecCCccccCCCCEEEE
Q 016351 273 DDIREVRSKFLSSIRGEGTRLCGFSGWFDVHFR-GSTEDPAQQEIELTTAPSTYNGTHWGQQVFLFRPSVRVSEGDDLNV 351 (391)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~g~~~g~~~wf~~~l~-~~~~~~~~~~i~lst~P~~~~~~hW~q~~~~l~~p~~v~~g~~l~~ 351 (391)
+++ .+...|.+.+. ++|.+|||++||++.|+ +. ++++.|||+|. .+.|||+|++|+|++|+.|++|++|.+
T Consensus 239 ~~~-~~~~~~~~~~~-~~~~~~g~~~wfd~~~~~~~-----~~~v~lst~P~-~~~thW~q~~~~l~~p~~v~~g~~i~~ 310 (340)
T 2fyt_A 239 SDL-EFSSDFTLKIT-RTSMCTAIAGYFDIYFEKNC-----HNRVVFSTGPQ-STKTHWKQTVFLLEKPFSVKAGEALKG 310 (340)
T ss_dssp GGG-SEEEEEEEEBC-SCEEEEEEEEEEEEEECTTC-----SSCEEEECSTT-SCCCTTCEEEEEEEEEEEECTTCEEEE
T ss_pred ccc-ceEeeEEEEEc-cCcEEEEEEEEEEEEeecCC-----CCCEEEECCCC-cCCCccccEEEEeCCceEcCCCCEEEE
Confidence 777 67788999988 99999999999999994 32 46799999994 779999999999999999999999999
Q ss_pred EEEEEeCCCCCeeeEEEEEEEE
Q 016351 352 SFSMTRSKENHRLLEVEFSCEI 373 (391)
Q Consensus 352 ~~~~~~~~~~~r~~~~~~~~~~ 373 (391)
++.+.++.+|+|.|+|.++|..
T Consensus 311 ~~~~~~~~~~~r~~~~~~~~~~ 332 (340)
T 2fyt_A 311 KVTVHKNKKDPRSLTVTLTLNN 332 (340)
T ss_dssp EEEEEECSSCTTSEEEEEEETT
T ss_pred EEEEEECCCCCceEEEEEEEEc
Confidence 9999999999999988888843
|
| >4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-49 Score=397.24 Aligned_cols=294 Identities=21% Similarity=0.284 Sum_probs=241.4
Q ss_pred hhcCChHhHHHHHHHHHhcCC--------CCCCCEEEEECCcccHHHHHHHHcCCC-----eEEEEechHHHHHHHHHHH
Q 016351 55 EMLSDRVRMDAYFNSIFQNKH--------HFQGKTVLDVGTGSGILAIWSAQAGAR-----KVYAVEATKMSDHARTLVK 121 (391)
Q Consensus 55 ~ml~d~~r~~~~~~~i~~~~~--------~~~~~~VLDlGcGtG~l~~~~a~~g~~-----~V~avD~s~~~~~a~~~~~ 121 (391)
.+-+|.++|+.|.+||.+++. ..+.++|||||||+|.|++++++++++ +|+|||.|+++..|++.++
T Consensus 326 vFEkD~vKy~~Ye~AI~~Al~d~~~~~~~~~~~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp~A~~a~~~v~ 405 (637)
T 4gqb_A 326 VFEKDPIKYSQYQQAIYKCLLDRVPEEEKDTNVQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNPNAVVTLENWQ 405 (637)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHSCGGGTTTCEEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCHHHHHHHHHHH
T ss_pred hhcCChhhHHHHHHHHHHHHHHhhhhccccCCCcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHHHH
Confidence 456899999999999987542 223468999999999997777666443 6899999999999999999
Q ss_pred HcCCCCcEEEEEcccccCCCCCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcccceeEEeecccCcCccch
Q 016351 122 ANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHARMWVAPIRSGLGDQKQ 201 (391)
Q Consensus 122 ~~~~~~~v~~i~~d~~~~~~~~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~~~~~~~~~~~~~~~~~~ 201 (391)
.|++.++|+++++|++++.+|+++|+||||+||+++.+|.++ .++.++.|+|||||++||+.+++|++|+++...
T Consensus 406 ~N~~~dkVtVI~gd~eev~LPEKVDIIVSEwMG~fLl~E~ml-evL~Ardr~LKPgGimiPs~atlyiapi~~~~l---- 480 (637)
T 4gqb_A 406 FEEWGSQVTVVSSDMREWVAPEKADIIVSELLGSFADNELSP-ECLDGAQHFLKDDGVSIPGEYTSFLAPISSSKL---- 480 (637)
T ss_dssp HHTTGGGEEEEESCTTTCCCSSCEEEEECCCCBTTBGGGCHH-HHHHHHGGGEEEEEEEESCEEEEEEEEEECHHH----
T ss_pred hccCCCeEEEEeCcceeccCCcccCEEEEEcCcccccccCCH-HHHHHHHHhcCCCcEEccccceEEEEEecCHHH----
Confidence 999999999999999999999999999999999999999987 688999999999999999999999999976421
Q ss_pred hhccccccchhhhhhcCccccccccccCCCcchhhhhhhhcccCceeecCCCCccccceeEEEEEcCCCCcccccceeeE
Q 016351 202 QDYEGALDDWYSFLKETKTYYGVDMSVLTKPFSEEQKKYYLQTSLWSNLHPDQVIGTAAVVKNIDCSTATVDDIREVRSK 281 (391)
Q Consensus 202 ~~~~~~~~~w~~~~~~~~~~~g~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~p~~~~~~dl~~~~~~~~~~~~~~ 281 (391)
+.+....|. ..++++. .+.+|.+..++..+.+++|+.+++||+.+........+...
T Consensus 481 --~~e~~~~~~-------~~~~~~~--------------~~~~p~Vv~~~~~~~Ls~p~~~~~fd~~~~~~~~~~~~~~~ 537 (637)
T 4gqb_A 481 --YNEVRACRE-------KDRDPEA--------------QFEMPYVVRLHNFHQLSAPQPCFTFSHPNRDPMIDNNRYCT 537 (637)
T ss_dssp --HHHHHTTCC-------TTSCTTG--------------GGGSCEECBCCSCEECSCCEEEEEEESSCCSTTCCCCEEEE
T ss_pred --HHHHHhccc-------ccccchh--------------hcCCcEEEEecCccccCCCEEEEEEECCCCCccccceEEEE
Confidence 122222331 2233222 12346666777788899999999999987655443366778
Q ss_pred EEEEEEecCceeEEEEEEEEeeecCCCCCCCCCcEEEecCCCC--CCCCCccceEEecCCccccCCCCEEEEEEEEEeCC
Q 016351 282 FLSSIRGEGTRLCGFSGWFDVHFRGSTEDPAQQEIELTTAPST--YNGTHWGQQVFLFRPSVRVSEGDDLNVSFSMTRSK 359 (391)
Q Consensus 282 ~~~~~~~~~g~~~g~~~wf~~~l~~~~~~~~~~~i~lst~P~~--~~~~hW~q~~~~l~~p~~v~~g~~l~~~~~~~~~~ 359 (391)
+++++. ++|++|||++|||++|+ +++.|||+|.. .++|||+|++|||++|+.|++||+|+++| +|+.
T Consensus 538 ~~f~i~-~~g~vhGf~~wFD~~f~--------~~V~LST~P~~~s~~~THW~Q~vfpL~~Pl~V~~Gd~I~~~~--~R~~ 606 (637)
T 4gqb_A 538 LEFPVE-VNTVLHGFAGYFETVLY--------QDITLSIRPETHSPGMFSWFPILFPIKQPITVREGQTICVRF--WRCS 606 (637)
T ss_dssp EEEECC-SCEEEEEEEEEEEEEEE--------TTEEEECSGGGCCTTCCSCCCEEEEEEEEEEECTTCEEEEEE--EEEE
T ss_pred EEEEec-CCcEEEEEEEEEEEEee--------CCeEEECCCCCCCCCCCcccCeEEEeCCCeEECCCCEEEEEE--EEEe
Confidence 899988 99999999999999995 46999999952 35799999999999999999999999887 5555
Q ss_pred CCCeeeEEEEEEEEeccc-cccCCcccceeee
Q 016351 360 ENHRLLEVEFSCEIREST-GQILPPIKNKFYI 390 (391)
Q Consensus 360 ~~~r~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 390 (391)
+++| |||||.|+.+. ..+.++.|.+|+|
T Consensus 607 d~~k---VWYEW~v~~p~~s~ihN~~Gr~y~i 635 (637)
T 4gqb_A 607 NSKK---VWYEWAVTAPVCSAIHNPTGRSYTI 635 (637)
T ss_dssp CSSE---EEEEEEEEESSCCCCBSGGGSSCCE
T ss_pred CCCc---eeEEEEEeCCcCccccCCCCceeee
Confidence 6667 99999999987 5556677888887
|
| >3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-46 Score=375.50 Aligned_cols=308 Identities=19% Similarity=0.261 Sum_probs=238.1
Q ss_pred hHhhcCChHhHHHHHHHHHhcCCCC-----CCCEEEEECCcccHHHHHHHHc----C----------CCeEEEEechHHH
Q 016351 53 QKEMLSDRVRMDAYFNSIFQNKHHF-----QGKTVLDVGTGSGILAIWSAQA----G----------ARKVYAVEATKMS 113 (391)
Q Consensus 53 ~~~ml~d~~r~~~~~~~i~~~~~~~-----~~~~VLDlGcGtG~l~~~~a~~----g----------~~~V~avD~s~~~ 113 (391)
.+.|++|..|+..|++||.+++... ++++|||||||+|+|+++++++ + +.+|+|||.|+++
T Consensus 379 Ye~fekD~vRy~~Y~~AI~~al~d~~~~~~~~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A 458 (745)
T 3ua3_A 379 YNTFEQDQIKYDVYGEAVVGALKDLGADGRKTVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNA 458 (745)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHH
T ss_pred HHHHcCChhhHHHHHHHHHHHHHHhhcccCCCcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHH
Confidence 3578999999999999998875322 2468999999999998655443 2 2389999999655
Q ss_pred HHHHHHHHHcCCCCcEEEEEcccccCCC------CCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEccccee
Q 016351 114 DHARTLVKANNLQDVVEVIEGSVEDIVL------PEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHARM 187 (391)
Q Consensus 114 ~~a~~~~~~~~~~~~v~~i~~d~~~~~~------~~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~~~~ 187 (391)
..+.+....|+++++|+++++|++++.+ ++++|+||||+|++++.+|. .+.++..+.++|||||++||+.++.
T Consensus 459 ~~~l~~~~~Ng~~d~VtVI~gd~eev~lp~~~~~~ekVDIIVSElmGsfl~nEL-~pe~Ld~v~r~Lkp~Gi~iP~~~t~ 537 (745)
T 3ua3_A 459 IVTLKYMNVRTWKRRVTIIESDMRSLPGIAKDRGFEQPDIIVSELLGSFGDNEL-SPECLDGVTGFLKPTTISIPQKYTS 537 (745)
T ss_dssp HHHHHHHHHHTTTTCSEEEESCGGGHHHHHHHTTCCCCSEEEECCCBTTBGGGS-HHHHHHTTGGGSCTTCEEESCEEEE
T ss_pred HHHHHHHHhcCCCCeEEEEeCchhhcccccccCCCCcccEEEEeccccccchhc-cHHHHHHHHHhCCCCcEEECCccEE
Confidence 5555555569999999999999999987 79999999999999999885 4567888899999999999999999
Q ss_pred EEeecccCcCccchhhccccccchhhhhhcCc--cccccccccCCC------------cchhhhhhhhcccCceeecCCC
Q 016351 188 WVAPIRSGLGDQKQQDYEGALDDWYSFLKETK--TYYGVDMSVLTK------------PFSEEQKKYYLQTSLWSNLHPD 253 (391)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~--~~~g~dl~~~~~------------~~~~~~~~~~~~~~~~~~~~~~ 253 (391)
|++|+++... |.....-.. -++||....... .... .....+.+|.+..+++.
T Consensus 538 ylaPi~~~~l-------------~~~v~~~~~~~~~~G~p~~g~~~P~~~~~g~~i~~~~~~-~~~~a~e~PyVv~l~~~ 603 (745)
T 3ua3_A 538 YVKPIMSTHI-------------HQTIKAQSIPYLSRAIPSHGRGEPELDEDEMWIQKYPQG-HVRNNMDQIYVVYLSKY 603 (745)
T ss_dssp EEEEEECHHH-------------HHHHHTCCCCGGGTTSCCSSSCCCEECTTSCEECCCTTC-HHHHHHSSCEEECCCSC
T ss_pred EEEEecCHHH-------------HHHHHhhcccccccccccccccccccccccccccccccc-cccccccccEEEeeccc
Confidence 9999987532 321111000 123332110000 0000 02334567999999999
Q ss_pred Ccccc-ceeEEEEEcCCCCcccccceeeEEEEEEEecCceeEEEEEEEEeeecCCCCCCCCCcEEEecCCCCC--CCCCc
Q 016351 254 QVIGT-AAVVKNIDCSTATVDDIREVRSKFLSSIRGEGTRLCGFSGWFDVHFRGSTEDPAQQEIELTTAPSTY--NGTHW 330 (391)
Q Consensus 254 ~~ls~-p~~~~~~dl~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~wf~~~l~~~~~~~~~~~i~lst~P~~~--~~~hW 330 (391)
..+++ |+++++||+.+....+. .+...+++.+. ++|.+|||++|||+.|+ ++|.|||+|.+. .++||
T Consensus 604 ~~Ls~~pq~vftFdhp~~~~~d~-~r~~~~~F~~~-r~g~iHGfagwFDi~Ly--------k~V~LST~P~t~s~~mThW 673 (745)
T 3ua3_A 604 IPLAETTKPVFTFEHPNFMNSSN-ERSDSIEFVMD-RNADLMGFAGYFDLQLY--------KTVMLSIEPSTHTPGMVSW 673 (745)
T ss_dssp EESSSSCEEEEEEESSCTTCCCS-CEEEEEEEECC-SSEEEEEEEEEEEEEEE--------TTEEEECSSTTCCTTCCSC
T ss_pred eecCCCCceEEEEECCCCCcccc-ceeEEEEEEeC-CCcEEEEEEEEEEEEec--------CCcEEecCCCCCCCCCccc
Confidence 99999 99999999998876665 67888999999 99999999999999995 469999999643 36899
Q ss_pred cceEEecCCccccCCCCEEEEEEEEEeCCCCCeeeEEEEEEEEe------ccc-cccCCcccceeee
Q 016351 331 GQQVFLFRPSVRVSEGDDLNVSFSMTRSKENHRLLEVEFSCEIR------EST-GQILPPIKNKFYI 390 (391)
Q Consensus 331 ~q~~~~l~~p~~v~~g~~l~~~~~~~~~~~~~r~~~~~~~~~~~------~~~-~~~~~~~~~~~~~ 390 (391)
+|++|||++|+.|++|++|.+++ +|+.++.+ |||||.|+ .+. ..+-|+.|.+|+|
T Consensus 674 fQtfFPL~ePL~V~~GdeI~g~~--~R~~d~~k---VWYEW~v~~~~~~g~p~~~~ihN~~G~sy~~ 735 (745)
T 3ua3_A 674 FPAVIPLRDQLRVGEGDRISLKI--DRKVDNTG---VWYEWHVEKKKTNGESVSTPIQNPNGESYYM 735 (745)
T ss_dssp CCEEEEEEEEEEECTTCEEEEEE--EEEEETTE---EEEEEEEEEECTTSCEEECCCBSGGGSSCCE
T ss_pred eeEEEecCCceEeCCCCEEEEEE--EEEcCCCC---EEEEEEEEeccCCCCccccccCCCCCcEEee
Confidence 99999999999999999999877 55555555 99999988 444 4555677778876
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-44 Score=345.11 Aligned_cols=318 Identities=34% Similarity=0.570 Sum_probs=257.4
Q ss_pred ccchhhhhhhhhhhhhHhhcCChHhHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEechHHHHHHH
Q 016351 38 VDFANYFCTYAFLYHQKEMLSDRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEATKMSDHAR 117 (391)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~ml~d~~r~~~~~~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s~~~~~a~ 117 (391)
.....||+.|.+++.+..|++|..|+..|.++|.+.+...++.+|||||||+|.+++.++++|+.+|+|+|+|++++.|+
T Consensus 10 ~~~~~y~~~y~~~~~~~~ml~d~~r~~~y~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~~vD~s~~~~~a~ 89 (348)
T 2y1w_A 10 SSAVQYFQFYGYLSQQQNMMQDYVRTGTYQRAILQNHTDFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEASTMAQHAE 89 (348)
T ss_dssp HHHHHHHHHHTCHHHHHHHHTCHHHHHHHHHHHHHTGGGTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTHHHHHH
T ss_pred ccHHHHHHHHhhhhHHHHHhcchHHHHHHHHHHHhccccCCcCEEEEcCCCccHHHHHHHhCCCCEEEEECCHHHHHHHH
Confidence 34567999999999999999999999999999998887778899999999999999999999888999999998889999
Q ss_pred HHHHHcCCCCcEEEEEcccccCCCCCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcccceeEEeecccCcC
Q 016351 118 TLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHARMWVAPIRSGLG 197 (391)
Q Consensus 118 ~~~~~~~~~~~v~~i~~d~~~~~~~~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~~~~~~~~~~~~~~ 197 (391)
++++.+++.++|+++.+|++++.++++||+|+|+++.+++..+..+. .+..+.++|+|||.+++..++.+..|+.....
T Consensus 90 ~~~~~~~l~~~v~~~~~d~~~~~~~~~~D~Ivs~~~~~~~~~~~~~~-~l~~~~~~LkpgG~li~~~~~~~~~~i~~~~~ 168 (348)
T 2y1w_A 90 VLVKSNNLTDRIVVIPGKVEEVSLPEQVDIIISEPMGYMLFNERMLE-SYLHAKKYLKPSGNMFPTIGDVHLAPFTDEQL 168 (348)
T ss_dssp HHHHHTTCTTTEEEEESCTTTCCCSSCEEEEEECCCBTTBTTTSHHH-HHHHGGGGEEEEEEEESCEEEEEEEEECCHHH
T ss_pred HHHHHcCCCCcEEEEEcchhhCCCCCceeEEEEeCchhcCChHHHHH-HHHHHHhhcCCCeEEEEecCcEEEEEecchHH
Confidence 99999999888999999999988778999999998877776665444 45677899999999999999999988864321
Q ss_pred ccchhhccccccchhhhhhcCccccccccccCCCcchhhhhhhhcccCceeecCCCCccccceeEEEEEcCCCCcccccc
Q 016351 198 DQKQQDYEGALDDWYSFLKETKTYYGVDMSVLTKPFSEEQKKYYLQTSLWSNLHPDQVIGTAAVVKNIDCSTATVDDIRE 277 (391)
Q Consensus 198 ~~~~~~~~~~~~~w~~~~~~~~~~~g~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~p~~~~~~dl~~~~~~~~~~ 277 (391)
. .+......+|.. ....|++++.+.+... ...+..|.++..+....+..+ ....+||.++..+++..
T Consensus 169 ~---~~~~~~~~~w~~-----~~~~g~d~~~l~~~~~----~~~f~~p~~d~~~~~~~~~~~-~~~~~df~~~~~~~~~~ 235 (348)
T 2y1w_A 169 Y---MEQFTKANFWYQ-----PSFHGVDLSALRGAAV----DEYFRQPVVDTFDIRILMAKS-VKYTVNFLEAKEGDLHR 235 (348)
T ss_dssp H---HHHHHHHGGGCC-----SCBTTBCCGGGHHHHH----HHHHTSCEEECCCGGGBCBCC-EEEEEETTTCCGGGGSE
T ss_pred h---hhhccccCcccc-----cccCcccHHHhhhHHH----hhhccCCeEEeECCeeecCcc-eEEEEECCcCChHHhce
Confidence 1 011112234531 3678889887743221 122345666655544444444 35667999988887755
Q ss_pred eeeEEEEEEEecCceeEEEEEEEEeeecCCCCCCCCCcEEEecCCCCCCCCCccceEEecCCccccCCCCEEEEEEEEEe
Q 016351 278 VRSKFLSSIRGEGTRLCGFSGWFDVHFRGSTEDPAQQEIELTTAPSTYNGTHWGQQVFLFRPSVRVSEGDDLNVSFSMTR 357 (391)
Q Consensus 278 ~~~~~~~~~~~~~g~~~g~~~wf~~~l~~~~~~~~~~~i~lst~P~~~~~~hW~q~~~~l~~p~~v~~g~~l~~~~~~~~ 357 (391)
....+++++. ++|.+|||++|||++|+++ .+++.|||+|. .+.|||+|++|+|++|+.|++|++|.+++.+.+
T Consensus 236 ~~~~~~~~~~-~~g~~~g~~~wfd~~~~~~-----~~~v~lSt~P~-~~~thW~q~~~~l~~p~~v~~g~~i~~~~~~~~ 308 (348)
T 2y1w_A 236 IEIPFKFHML-HSGLVHGLAFWFDVAFIGS-----IMTVWLSTAPT-EPLTHWYQVRCLFQSPLFAKAGDTLSGTCLLIA 308 (348)
T ss_dssp EEEEEEEEBS-SCEEEEEEEEEEEEEEECS-----SCEEEEECCTT-SCCCTTCEEEEEEEEEEEECTTCEEEEEEEEEE
T ss_pred eeeeEEEEEc-cCcEEEEEEEEEEEEEcCC-----CCceEEECCCC-cCCCeeeeEEEeeCCceEeCCCCEEEEEEEEEE
Confidence 6778899888 9999999999999999764 45799999994 789999999999999999999999999999998
Q ss_pred CCCCCeeeEEEEEEEEecccc
Q 016351 358 SKENHRLLEVEFSCEIRESTG 378 (391)
Q Consensus 358 ~~~~~r~~~~~~~~~~~~~~~ 378 (391)
+.. ++++|+++|.++++..
T Consensus 309 ~~~--~~~~~~~~~~~~~~~~ 327 (348)
T 2y1w_A 309 NKR--QSYDISIVAQVDQTGS 327 (348)
T ss_dssp CTT--SSEEEEEEEEETTTCC
T ss_pred CCC--CCcEEEEEEEEccccc
Confidence 875 4678999999988753
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-41 Score=338.44 Aligned_cols=313 Identities=35% Similarity=0.579 Sum_probs=252.4
Q ss_pred hhhhhhhhhhhhHhhcCChHhHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEechHHHHHHHHHHH
Q 016351 42 NYFCTYAFLYHQKEMLSDRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEATKMSDHARTLVK 121 (391)
Q Consensus 42 ~~~~~~~~~~~~~~ml~d~~r~~~~~~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s~~~~~a~~~~~ 121 (391)
.|++.|.....+..|+.+..+++.|.+++...+...++.+|||||||+|.+++.+++.++.+|+|+|+|++++.|+++++
T Consensus 122 ~~~~~y~~~~~~~~~L~d~~~t~~~~~~il~~l~~~~~~~VLDiGcGtG~la~~la~~~~~~V~gvD~s~~l~~A~~~~~ 201 (480)
T 3b3j_A 122 QYFQFYGYLSQQQNMMQDYVRTGTYQRAILQNHTDFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEASTMAQHAEVLVK 201 (480)
T ss_dssp EEEEGGGCSCHHHHHHHHHHHHHHHHHHHHHTGGGTTTCEEEEESCSTTHHHHHHHHTTCSEEEEEECHHHHHHHHHHHH
T ss_pred hHHHHHhhhccchhhhcChHhHHHHHHHHHHhhhhcCCCEEEEecCcccHHHHHHHHcCCCEEEEEEcHHHHHHHHHHHH
Confidence 46677777777889999999999999999887766678999999999999999999988779999999988899999999
Q ss_pred HcCCCCcEEEEEcccccCCCCCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcccceeEEeecccCcCccch
Q 016351 122 ANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHARMWVAPIRSGLGDQKQ 201 (391)
Q Consensus 122 ~~~~~~~v~~i~~d~~~~~~~~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~~~~~~~~~~~~~~~~~~ 201 (391)
.+++.++|+++++|+.++.++++||+|+|+++.+++..+..+. .+..+.++|+|||.+++..++.+..|+......
T Consensus 202 ~~gl~~~v~~~~~d~~~~~~~~~fD~Ivs~~~~~~~~~e~~~~-~l~~~~~~LkpgG~li~~~~~~~~~pi~~~~l~--- 277 (480)
T 3b3j_A 202 SNNLTDRIVVIPGKVEEVSLPEQVDIIISEPMGYMLFNERMLE-SYLHAKKYLKPSGNMFPTIGDVHLAPFTDEQLY--- 277 (480)
T ss_dssp HTTCTTTEEEEESCTTTCCCSSCEEEEECCCCHHHHTCHHHHH-HHHHGGGGEEEEEEEESCEEEEEEEEECCHHHH---
T ss_pred HcCCCCcEEEEECchhhCccCCCeEEEEEeCchHhcCcHHHHH-HHHHHHHhcCCCCEEEEEeceeeeeccCchHHH---
Confidence 9999888999999999987778999999998878777665554 455778999999999999999999988653211
Q ss_pred hhccccccchhhhhhcCccccccccccCCCcchhhhhhhhcccCceeecCCCCccccceeEEEEEcCCCCcccccceeeE
Q 016351 202 QDYEGALDDWYSFLKETKTYYGVDMSVLTKPFSEEQKKYYLQTSLWSNLHPDQVIGTAAVVKNIDCSTATVDDIREVRSK 281 (391)
Q Consensus 202 ~~~~~~~~~w~~~~~~~~~~~g~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~p~~~~~~dl~~~~~~~~~~~~~~ 281 (391)
.+......+|.. ..++|++++.+.+... ...+..|..+..+....++.+.. ..+||.+...+++......
T Consensus 278 ~e~~~~~~~w~~-----~~~~g~dl~~l~~~~~----~~~f~~pvvd~~~~~~~y~~tl~-~~~d~~~~~~~~l~~~~~~ 347 (480)
T 3b3j_A 278 MEQFTKANFWYQ-----PSFHGVDLSALRGAAV----DEYFRQPVVDTFDIRILMAKSVK-YTVNFLEAKEGDLHRIEIP 347 (480)
T ss_dssp HHHHHHHHHHHS-----SCBTTBCCGGGHHHHH----HHHTTSCEECCCCSTTBCSCCEE-EEEETTTCCTTTTTEEEEE
T ss_pred HHHhhccCcccc-----ccCCCcChhhhhhHHH----HhccCCcEEEEeecccccchhhh-hhhhhhcCChhhhcceeee
Confidence 000011234532 3678999987743221 12234466665555555666544 5899999888887555778
Q ss_pred EEEEEEecCceeEEEEEEEEeeecCCCCCCCCCcEEEecCCCCCCCCCccceEEecCCccccCCCCEEEEEEEEEeCCCC
Q 016351 282 FLSSIRGEGTRLCGFSGWFDVHFRGSTEDPAQQEIELTTAPSTYNGTHWGQQVFLFRPSVRVSEGDDLNVSFSMTRSKEN 361 (391)
Q Consensus 282 ~~~~~~~~~g~~~g~~~wf~~~l~~~~~~~~~~~i~lst~P~~~~~~hW~q~~~~l~~p~~v~~g~~l~~~~~~~~~~~~ 361 (391)
|++.+. ++|.+|||++|||++|+++ .+++.|||+|. .+.|||+|++|+|++|+.|++|++|++++.+.++..
T Consensus 348 ~~~~~~-~~g~~hg~~~wFd~~~~~~-----~~~v~lST~P~-~~~thW~q~~~~l~~p~~v~~g~~i~g~~~~~~~~~- 419 (480)
T 3b3j_A 348 FKFHML-HSGLVHGLAFWFDVAFIGS-----IMTVWLSTAPT-EPLTHWYQVRCLFQSPLFAKAGDTLSGTCLLIANKR- 419 (480)
T ss_dssp EEEECS-SCEEEEEEEEEEEEEEECS-----SCEEESSSCCS-SSCCCSEEEEEEEEEEEEECTTCEEEEEEEEEECTT-
T ss_pred EEEEEc-cCcEEEEEEEEEEEEEcCC-----CCceEEeCCCC-cCCCeeeeEEEEeCCceEeCCCCEEEEEEEEEECCC-
Confidence 899888 9999999999999999764 45789999994 789999999999999999999999999999998865
Q ss_pred CeeeEEEEEEEEeccc
Q 016351 362 HRLLEVEFSCEIREST 377 (391)
Q Consensus 362 ~r~~~~~~~~~~~~~~ 377 (391)
++++||++|.++++.
T Consensus 420 -~~~~v~~~~~~~~~~ 434 (480)
T 3b3j_A 420 -QSYDISIVAQVDQTG 434 (480)
T ss_dssp -SSEEEEEEEEETTTC
T ss_pred -CCcEEEEEEEEccCC
Confidence 456899999998865
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=1.7e-15 Score=139.46 Aligned_cols=113 Identities=22% Similarity=0.254 Sum_probs=95.6
Q ss_pred HHhcCC-CCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-Cccc
Q 016351 70 IFQNKH-HFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVD 146 (391)
Q Consensus 70 i~~~~~-~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~-~~~D 146 (391)
+...+. ..++.+|||||||+|.++..+++.+..+|+|+|+| .+++.|+++++..++.++++++++|+.+++++ ++||
T Consensus 37 ~l~~l~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD 116 (267)
T 3kkz_A 37 ALSFIDNLTEKSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLPFRNEELD 116 (267)
T ss_dssp HHTTCCCCCTTCEEEEETCTTCHHHHHHHTTCSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTTCEE
T ss_pred HHHhcccCCCCCEEEEeCCCCCHHHHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhCCCCCCCEE
Confidence 334443 45678999999999999999999866689999999 99999999999999988899999999998765 7899
Q ss_pred EEEEccccccccCcchHHHHHHHHhccccCCeEEEcccce
Q 016351 147 VIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHAR 186 (391)
Q Consensus 147 ~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~~~ 186 (391)
+|+|..+.+.+ ....++..+.++|+|||.+++....
T Consensus 117 ~i~~~~~~~~~----~~~~~l~~~~~~LkpgG~l~~~~~~ 152 (267)
T 3kkz_A 117 LIWSEGAIYNI----GFERGLNEWRKYLKKGGYLAVSECS 152 (267)
T ss_dssp EEEESSCGGGT----CHHHHHHHHGGGEEEEEEEEEEEEE
T ss_pred EEEEcCCceec----CHHHHHHHHHHHcCCCCEEEEEEee
Confidence 99996544433 3678899999999999999877554
|
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=1.5e-15 Score=139.49 Aligned_cols=106 Identities=23% Similarity=0.337 Sum_probs=89.1
Q ss_pred CCCCEEEEECCcccHHHHHHHHcC---CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEcc
Q 016351 77 FQGKTVLDVGTGSGILAIWSAQAG---ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEW 152 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~l~~~~a~~g---~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~~D~Ivse~ 152 (391)
.++.+|||||||+|.++..+++.. ..+|+|||+| .|++.|+++++..+...+|+++++|+.++++ +++|+|++..
T Consensus 69 ~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~~-~~~d~v~~~~ 147 (261)
T 4gek_A 69 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAI-ENASMVVLNF 147 (261)
T ss_dssp CTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCCC-CSEEEEEEES
T ss_pred CCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeecccccccc-cccccceeee
Confidence 577899999999999999999862 1279999999 9999999999998888889999999999876 5799999865
Q ss_pred ccccccCcchHHHHHHHHhccccCCeEEEccc
Q 016351 153 MGYFLLRESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 153 ~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~ 184 (391)
+.+++..+ ....++++++++|||||.+++..
T Consensus 148 ~l~~~~~~-~~~~~l~~i~~~LkpGG~lii~e 178 (261)
T 4gek_A 148 TLQFLEPS-ERQALLDKIYQGLNPGGALVLSE 178 (261)
T ss_dssp CGGGSCHH-HHHHHHHHHHHHEEEEEEEEEEE
T ss_pred eeeecCch-hHhHHHHHHHHHcCCCcEEEEEe
Confidence 54444332 35678999999999999998653
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=4.3e-15 Score=135.61 Aligned_cols=108 Identities=21% Similarity=0.291 Sum_probs=93.2
Q ss_pred CCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-CcccEEEEcc
Q 016351 75 HHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIISEW 152 (391)
Q Consensus 75 ~~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~-~~~D~Ivse~ 152 (391)
...++.+|||||||+|.++..+++.+..+|+|+|+| .+++.|+++++.+++.++++++++|+.+++++ ++||+|++..
T Consensus 43 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~ 122 (257)
T 3f4k_A 43 ELTDDAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLPFQNEELDLIWSEG 122 (257)
T ss_dssp CCCTTCEEEEETCTTSHHHHHHHHHCCSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCSSCTTCEEEEEEES
T ss_pred cCCCCCeEEEeCCCCCHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCCCCCCCEEEEEecC
Confidence 345678999999999999999999865589999999 99999999999999998899999999988766 8999999965
Q ss_pred ccccccCcchHHHHHHHHhccccCCeEEEcccce
Q 016351 153 MGYFLLRESMFDSVICARDRWLKPTGVMYPSHAR 186 (391)
Q Consensus 153 ~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~~~ 186 (391)
+.+.+ ....++..+.++|+|||.+++....
T Consensus 123 ~l~~~----~~~~~l~~~~~~L~pgG~l~~~~~~ 152 (257)
T 3f4k_A 123 AIYNI----GFERGMNEWSKYLKKGGFIAVSEAS 152 (257)
T ss_dssp CSCCC----CHHHHHHHHHTTEEEEEEEEEEEEE
T ss_pred hHhhc----CHHHHHHHHHHHcCCCcEEEEEEee
Confidence 43333 3678899999999999999877544
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.63 E-value=2.7e-15 Score=136.80 Aligned_cols=135 Identities=26% Similarity=0.389 Sum_probs=93.2
Q ss_pred ccchhhhhhhhhhhhhHhhcCChHhHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHH
Q 016351 38 VDFANYFCTYAFLYHQKEMLSDRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHA 116 (391)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~ml~d~~r~~~~~~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a 116 (391)
++...||+.|...+.... ..........+...+...++.+|||||||+|.++..+++.+..+|+|+|++ .+++.|
T Consensus 8 y~~~~~~~~y~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a 83 (253)
T 3g5l_A 8 YDDKHFFEQYSQMPRSKE----GLKAAGEWHELKKMLPDFNQKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLSERMLTEA 83 (253)
T ss_dssp -----------------C----HHHHHHHHHHHHTTCCCCTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHH
T ss_pred cccHHHHHHHHHhhcccc----cccchhhHHHHHHhhhccCCCEEEEECCCCCHHHHHHHHcCCCEEEEEECCHHHHHHH
Confidence 455567777666554321 112222234556666666789999999999999999999987789999999 899999
Q ss_pred HHHHHHcCCCCcEEEEEcccccCCCC-CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 117 RTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 117 ~~~~~~~~~~~~v~~i~~d~~~~~~~-~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
+++.. ..+++++++|+.+++++ ++||+|++..+.+.+ ..+..++..+.++|+|||.+++.
T Consensus 84 ~~~~~----~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~---~~~~~~l~~~~~~LkpgG~l~~~ 144 (253)
T 3g5l_A 84 KRKTT----SPVVCYEQKAIEDIAIEPDAYNVVLSSLALHYI---ASFDDICKKVYINLKSSGSFIFS 144 (253)
T ss_dssp HHHCC----CTTEEEEECCGGGCCCCTTCEEEEEEESCGGGC---SCHHHHHHHHHHHEEEEEEEEEE
T ss_pred HHhhc----cCCeEEEEcchhhCCCCCCCeEEEEEchhhhhh---hhHHHHHHHHHHHcCCCcEEEEE
Confidence 88765 34599999999998875 899999995433333 45788999999999999999875
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.62 E-value=5.4e-15 Score=134.66 Aligned_cols=108 Identities=24% Similarity=0.358 Sum_probs=88.7
Q ss_pred CCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEcc
Q 016351 74 KHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEW 152 (391)
Q Consensus 74 ~~~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~~D~Ivse~ 152 (391)
....++.+|||+|||+|.++..+++.|. +|+|+|+| .|++.|++++..++. +++++++|+.++..+++||+|++..
T Consensus 37 ~~~~~~~~vLDlGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~--~v~~~~~d~~~~~~~~~fD~v~~~~ 113 (252)
T 1wzn_A 37 DAKREVRRVLDLACGTGIPTLELAERGY-EVVGLDLHEEMLRVARRKAKERNL--KIEFLQGDVLEIAFKNEFDAVTMFF 113 (252)
T ss_dssp TCSSCCCEEEEETCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC--CCEEEESCGGGCCCCSCEEEEEECS
T ss_pred hcccCCCEEEEeCCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHhcCC--ceEEEECChhhcccCCCccEEEEcC
Confidence 3334668999999999999999999987 79999999 999999999988876 3999999999987778999999842
Q ss_pred ccccccCcchHHHHHHHHhccccCCeEEEccc
Q 016351 153 MGYFLLRESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 153 ~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~ 184 (391)
..........+..++..+.++|+|||.++...
T Consensus 114 ~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~ 145 (252)
T 1wzn_A 114 STIMYFDEEDLRKLFSKVAEALKPGGVFITDF 145 (252)
T ss_dssp SGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CchhcCCHHHHHHHHHHHHHHcCCCeEEEEec
Confidence 11222233457788999999999999998654
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.62 E-value=4.8e-15 Score=131.50 Aligned_cols=117 Identities=24% Similarity=0.350 Sum_probs=94.6
Q ss_pred HHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC
Q 016351 63 MDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL 141 (391)
Q Consensus 63 ~~~~~~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~ 141 (391)
+..+.+.+...+...++ +|||||||+|.++..+++....+|+++|++ .+++.|+++++..++.++++++++|+.++++
T Consensus 29 ~~~~~~~~~~~~~~~~~-~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~ 107 (219)
T 3dlc_A 29 YPIIAENIINRFGITAG-TCIDIGSGPGALSIALAKQSDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIPI 107 (219)
T ss_dssp HHHHHHHHHHHHCCCEE-EEEEETCTTSHHHHHHHHHSEEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBCSS
T ss_pred cHHHHHHHHHhcCCCCC-EEEEECCCCCHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHCCC
Confidence 33444555554443344 999999999999999998733489999999 9999999999999988789999999999876
Q ss_pred C-CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 142 P-EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 142 ~-~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
+ ++||+|++..+.+.+ .....++..+.++|+|||.+++.
T Consensus 108 ~~~~~D~v~~~~~l~~~---~~~~~~l~~~~~~L~pgG~l~~~ 147 (219)
T 3dlc_A 108 EDNYADLIVSRGSVFFW---EDVATAFREIYRILKSGGKTYIG 147 (219)
T ss_dssp CTTCEEEEEEESCGGGC---SCHHHHHHHHHHHEEEEEEEEEE
T ss_pred CcccccEEEECchHhhc---cCHHHHHHHHHHhCCCCCEEEEE
Confidence 6 789999995543333 45678999999999999998864
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=99.62 E-value=7.9e-15 Score=135.15 Aligned_cols=117 Identities=19% Similarity=0.175 Sum_probs=96.1
Q ss_pred HHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-C
Q 016351 66 YFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-E 143 (391)
Q Consensus 66 ~~~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~-~ 143 (391)
+.+.+.+.+...++.+|||||||+|.++..+++....+|+|+|+| .+++.|+++++..++.++++++.+|+.+++++ +
T Consensus 49 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 128 (273)
T 3bus_A 49 LTDEMIALLDVRSGDRVLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLPFEDA 128 (273)
T ss_dssp HHHHHHHHSCCCTTCEEEEESCTTSHHHHHHHHHSCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCTT
T ss_pred HHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccCCCCCC
Confidence 344555556666789999999999999999988633489999999 99999999999999988899999999998766 7
Q ss_pred cccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcccc
Q 016351 144 KVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 144 ~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~~ 185 (391)
+||+|++..+.+.+ .....++..+.++|+|||.+++...
T Consensus 129 ~fD~v~~~~~l~~~---~~~~~~l~~~~~~L~pgG~l~i~~~ 167 (273)
T 3bus_A 129 SFDAVWALESLHHM---PDRGRALREMARVLRPGGTVAIADF 167 (273)
T ss_dssp CEEEEEEESCTTTS---SCHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred CccEEEEechhhhC---CCHHHHHHHHHHHcCCCeEEEEEEe
Confidence 89999984433322 3457889999999999999987643
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.62 E-value=1.7e-15 Score=137.08 Aligned_cols=135 Identities=16% Similarity=0.226 Sum_probs=100.5
Q ss_pred hhhhhhhhhhhHhhcCC-hHhHHHHHHHHHhcCCC--CCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHH
Q 016351 43 YFCTYAFLYHQKEMLSD-RVRMDAYFNSIFQNKHH--FQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHART 118 (391)
Q Consensus 43 ~~~~~~~~~~~~~ml~d-~~r~~~~~~~i~~~~~~--~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~ 118 (391)
+|+.++..|+.. .. ...+..+.+.+...+.. .++.+|||||||+|.++..+++.+. +|+++|++ .|++.|++
T Consensus 2 ~y~~~a~~yd~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~~~~~D~s~~~~~~a~~ 77 (246)
T 1y8c_A 2 CYNKFAHIYDKL---IRADVDYKKWSDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPKFK-NTWAVDLSQEMLSEAEN 77 (246)
T ss_dssp CHHHHHHHHHHH---TTCSCCHHHHHHHHHHHHHTTTCCTTEEEEETCTTSTTHHHHGGGSS-EEEEECSCHHHHHHHHH
T ss_pred hHHHHHHHHHHH---ccccccHHHHHHHHHHHHHHhCCCCCeEEEeCCCCCHHHHHHHHCCC-cEEEEECCHHHHHHHHH
Confidence 355555555442 11 22334444444443322 2678999999999999999999876 79999999 99999999
Q ss_pred HHHHcCCCCcEEEEEcccccCCCCCcccEEEEcc-ccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 119 LVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEW-MGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 119 ~~~~~~~~~~v~~i~~d~~~~~~~~~~D~Ivse~-~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
+....+. +++++++|+.+++++++||+|++.. +.+.+.....+..++..+.++|+|||.+++.
T Consensus 78 ~~~~~~~--~~~~~~~d~~~~~~~~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 141 (246)
T 1y8c_A 78 KFRSQGL--KPRLACQDISNLNINRKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFD 141 (246)
T ss_dssp HHHHTTC--CCEEECCCGGGCCCSCCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred HHhhcCC--CeEEEecccccCCccCCceEEEEcCccccccCCHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 9988776 4999999999987778999999954 3333333346778999999999999999864
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=99.61 E-value=6.7e-15 Score=134.26 Aligned_cols=118 Identities=19% Similarity=0.218 Sum_probs=96.0
Q ss_pred HHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCC
Q 016351 65 AYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPE 143 (391)
Q Consensus 65 ~~~~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~ 143 (391)
...+.+...+...++.+|||||||+|.++..+++....+|+|+|+| .+++.|+++++..++.++++++++|+.++.+.+
T Consensus 23 ~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~ 102 (256)
T 1nkv_A 23 EKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVANE 102 (256)
T ss_dssp HHHHHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCCSS
T ss_pred HHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHhCCcCC
Confidence 3444555555566789999999999999999988733389999999 999999999999999878999999999987668
Q ss_pred cccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcccc
Q 016351 144 KVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 144 ~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~~ 185 (391)
+||+|+|....+.+ .....++.++.++|||||.+++...
T Consensus 103 ~fD~V~~~~~~~~~---~~~~~~l~~~~r~LkpgG~l~~~~~ 141 (256)
T 1nkv_A 103 KCDVAACVGATWIA---GGFAGAEELLAQSLKPGGIMLIGEP 141 (256)
T ss_dssp CEEEEEEESCGGGT---SSSHHHHHHHTTSEEEEEEEEEEEE
T ss_pred CCCEEEECCChHhc---CCHHHHHHHHHHHcCCCeEEEEecC
Confidence 89999984433332 2457889999999999999987644
|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.60 E-value=2.4e-15 Score=131.10 Aligned_cols=105 Identities=23% Similarity=0.308 Sum_probs=87.5
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC--C-CCcccEEEEcc
Q 016351 77 FQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV--L-PEKVDVIISEW 152 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~--~-~~~~D~Ivse~ 152 (391)
.++.+|||+|||+|.+++.+++.++.+|+|+|++ .+++.|+++++.+++ ++++++++|+.++. + .++||+|++++
T Consensus 43 ~~~~~vLDlgcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~fD~i~~~~ 121 (189)
T 3p9n_A 43 LTGLAVLDLYAGSGALGLEALSRGAASVLFVESDQRSAAVIARNIEALGL-SGATLRRGAVAAVVAAGTTSPVDLVLADP 121 (189)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHTTCSEEEEEECCHHHHHHHHHHHHHHTC-SCEEEEESCHHHHHHHCCSSCCSEEEECC
T ss_pred CCCCEEEEeCCCcCHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCC-CceEEEEccHHHHHhhccCCCccEEEECC
Confidence 4678999999999999998888888789999999 999999999999998 45999999998863 2 47999999976
Q ss_pred ccccccCcchHHHHHHHHhc--cccCCeEEEccc
Q 016351 153 MGYFLLRESMFDSVICARDR--WLKPTGVMYPSH 184 (391)
Q Consensus 153 ~~~~~~~e~~l~~~l~~~~~--~L~~gG~ii~~~ 184 (391)
..+. ....+..++..+.+ +|+|||++++..
T Consensus 122 p~~~--~~~~~~~~l~~~~~~~~L~pgG~l~~~~ 153 (189)
T 3p9n_A 122 PYNV--DSADVDAILAALGTNGWTREGTVAVVER 153 (189)
T ss_dssp CTTS--CHHHHHHHHHHHHHSSSCCTTCEEEEEE
T ss_pred CCCc--chhhHHHHHHHHHhcCccCCCeEEEEEe
Confidence 4221 12356778888877 999999998653
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=5.2e-15 Score=131.56 Aligned_cols=116 Identities=13% Similarity=0.103 Sum_probs=94.0
Q ss_pred HHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC
Q 016351 64 DAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP 142 (391)
Q Consensus 64 ~~~~~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~ 142 (391)
..+...+...+...++.+|||||||+|.++..+++.+. +|+|+|++ .+++.|+++....+ +++++++|+.++..+
T Consensus 37 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~---~~~~~~~d~~~~~~~ 112 (216)
T 3ofk_A 37 ERHTQLLRLSLSSGAVSNGLEIGCAAGAFTEKLAPHCK-RLTVIDVMPRAIGRACQRTKRWS---HISWAATDILQFSTA 112 (216)
T ss_dssp HHHHHHHHHHTTTSSEEEEEEECCTTSHHHHHHGGGEE-EEEEEESCHHHHHHHHHHTTTCS---SEEEEECCTTTCCCS
T ss_pred HHHHHHHHHHcccCCCCcEEEEcCCCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHhcccCC---CeEEEEcchhhCCCC
Confidence 34455565556566778999999999999999999876 89999999 99999998877643 599999999998866
Q ss_pred CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 143 EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 143 ~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
++||+|++..+.+.+.....+..++..+.++|+|||.+++.
T Consensus 113 ~~fD~v~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 153 (216)
T 3ofk_A 113 ELFDLIVVAEVLYYLEDMTQMRTAIDNMVKMLAPGGHLVFG 153 (216)
T ss_dssp CCEEEEEEESCGGGSSSHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred CCccEEEEccHHHhCCCHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 89999999655455444334567899999999999999864
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=2e-14 Score=134.67 Aligned_cols=115 Identities=17% Similarity=0.132 Sum_probs=95.6
Q ss_pred HHHHhcCCCCCCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcc
Q 016351 68 NSIFQNKHHFQGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKV 145 (391)
Q Consensus 68 ~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~~ 145 (391)
+.+...+...++.+|||||||+|.++..+++. |. +|+|+|+| .+++.|+++++.+++.++++++.+|+.++ +++|
T Consensus 62 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~f 138 (302)
T 3hem_A 62 KLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYDV-NVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF--DEPV 138 (302)
T ss_dssp HHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC--CCCC
T ss_pred HHHHHHcCCCCcCEEEEeeccCcHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHc--CCCc
Confidence 34555555667889999999999999999988 74 89999999 99999999999999988899999999987 6899
Q ss_pred cEEEEccccccccC------cchHHHHHHHHhccccCCeEEEcccc
Q 016351 146 DVIISEWMGYFLLR------ESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 146 D~Ivse~~~~~~~~------e~~l~~~l~~~~~~L~~gG~ii~~~~ 185 (391)
|+|++..+.+.+.. ...+..++..+.++|+|||.+++...
T Consensus 139 D~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 184 (302)
T 3hem_A 139 DRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTI 184 (302)
T ss_dssp SEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEE
T ss_pred cEEEEcchHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEEE
Confidence 99999554333321 14567899999999999999987543
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} | Back alignment and structure |
|---|
Probab=99.59 E-value=8.2e-15 Score=132.45 Aligned_cols=132 Identities=21% Similarity=0.326 Sum_probs=100.8
Q ss_pred hhhhhhhhhhhHhhcCChHhHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHH
Q 016351 43 YFCTYAFLYHQKEMLSDRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVK 121 (391)
Q Consensus 43 ~~~~~~~~~~~~~ml~d~~r~~~~~~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~ 121 (391)
.|+.++..|+. +.+...+..+.+.+...+. ++.+|||+|||+|.++..+++. .+|+|+|+| .+++.|+++..
T Consensus 3 ~y~~~a~~yd~---~~~~~~~~~~~~~~~~~~~--~~~~vLdiG~G~G~~~~~l~~~--~~v~~vD~s~~~~~~a~~~~~ 75 (243)
T 3d2l_A 3 AYEQFAYVYDE---LMQDVPYPEWVAWVLEQVE--PGKRIADIGCGTGTATLLLADH--YEVTGVDLSEEMLEIAQEKAM 75 (243)
T ss_dssp ---CTTHHHHH---HTTTCCHHHHHHHHHHHSC--TTCEEEEESCTTCHHHHHHTTT--SEEEEEESCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHH---hhhcccHHHHHHHHHHHcC--CCCeEEEecCCCCHHHHHHhhC--CeEEEEECCHHHHHHHHHhhh
Confidence 45666666655 3334445667777776653 4589999999999999999887 489999999 99999999988
Q ss_pred HcCCCCcEEEEEcccccCCCCCcccEEEEcc-ccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 122 ANNLQDVVEVIEGSVEDIVLPEKVDVIISEW-MGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 122 ~~~~~~~v~~i~~d~~~~~~~~~~D~Ivse~-~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
.++. +++++++|+.+++++++||+|++.. ..+.+.....+..++..+.++|+|||.+++.
T Consensus 76 ~~~~--~~~~~~~d~~~~~~~~~fD~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 136 (243)
T 3d2l_A 76 ETNR--HVDFWVQDMRELELPEPVDAITILCDSLNYLQTEADVKQTFDSAARLLTDGGKLLFD 136 (243)
T ss_dssp HTTC--CCEEEECCGGGCCCSSCEEEEEECTTGGGGCCSHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred hcCC--ceEEEEcChhhcCCCCCcCEEEEeCCchhhcCCHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 7763 4999999999987778999999843 2233333345778899999999999999864
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.2e-14 Score=130.91 Aligned_cols=138 Identities=18% Similarity=0.216 Sum_probs=98.6
Q ss_pred hhhhhhhhhhhhHhhcCChHhHHHHHHHHHhcCC-CCCCCEEEEECCcccHHHHHHHHcC-CCeEEEEech-HHHHHHHH
Q 016351 42 NYFCTYAFLYHQKEMLSDRVRMDAYFNSIFQNKH-HFQGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEAT-KMSDHART 118 (391)
Q Consensus 42 ~~~~~~~~~~~~~~ml~d~~r~~~~~~~i~~~~~-~~~~~~VLDlGcGtG~l~~~~a~~g-~~~V~avD~s-~~~~~a~~ 118 (391)
.+|+..+..|+........ .+..+.+.+...+. ..++.+|||||||+|.++..+++.. ..+|+|+|+| .+++.|++
T Consensus 8 ~~f~~~a~~y~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~ 86 (234)
T 3dtn_A 8 RKFDAVSGKYDEQRRKFIP-CFDDFYGVSVSIASVDTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKN 86 (234)
T ss_dssp CCCCHHHHHHHHHHHHHCT-THHHHHHHHHHTCCCSCSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHhCc-CHHHHHHHHHHHhhcCCCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHH
Confidence 4555555555442211111 12333344444443 4567899999999999999999883 3489999999 89999998
Q ss_pred HHHHcCCCCcEEEEEcccccCCCCCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEccc
Q 016351 119 LVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 119 ~~~~~~~~~~v~~i~~d~~~~~~~~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~ 184 (391)
++...+ +++++++|+.+++++++||+|++..+.+.+.. .....++..+.++|+|||.++...
T Consensus 87 ~~~~~~---~~~~~~~d~~~~~~~~~fD~v~~~~~l~~~~~-~~~~~~l~~~~~~LkpgG~l~~~~ 148 (234)
T 3dtn_A 87 RFRGNL---KVKYIEADYSKYDFEEKYDMVVSALSIHHLED-EDKKELYKRSYSILKESGIFINAD 148 (234)
T ss_dssp HTCSCT---TEEEEESCTTTCCCCSCEEEEEEESCGGGSCH-HHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hhccCC---CEEEEeCchhccCCCCCceEEEEeCccccCCH-HHHHHHHHHHHHhcCCCcEEEEEE
Confidence 876654 59999999999887789999999654444322 223468999999999999998653
|
| >4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.6e-14 Score=134.18 Aligned_cols=103 Identities=28% Similarity=0.349 Sum_probs=87.7
Q ss_pred CCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC--CCCcccEEEEcccc
Q 016351 78 QGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV--LPEKVDVIISEWMG 154 (391)
Q Consensus 78 ~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~--~~~~~D~Ivse~~~ 154 (391)
++.+|||||||+|.++..+++.|. +|+|+|++ .+++.|+++++..++..+++++++|+.++. .+++||+|++..+.
T Consensus 68 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~l 146 (285)
T 4htf_A 68 QKLRVLDAGGGEGQTAIKMAERGH-QVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASHLETPVDLILFHAVL 146 (285)
T ss_dssp SCCEEEEETCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGGCSSCEEEEEEESCG
T ss_pred CCCEEEEeCCcchHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhhcCCCceEEEECchh
Confidence 467999999999999999999977 89999999 999999999999998777999999999986 34899999995443
Q ss_pred ccccCcchHHHHHHHHhccccCCeEEEccc
Q 016351 155 YFLLRESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 155 ~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~ 184 (391)
+.+ .....++..+.++|+|||.+++..
T Consensus 147 ~~~---~~~~~~l~~~~~~LkpgG~l~~~~ 173 (285)
T 4htf_A 147 EWV---ADPRSVLQTLWSVLRPGGVLSLMF 173 (285)
T ss_dssp GGC---SCHHHHHHHHHHTEEEEEEEEEEE
T ss_pred hcc---cCHHHHHHHHHHHcCCCeEEEEEE
Confidence 333 356789999999999999998653
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=1e-14 Score=135.96 Aligned_cols=108 Identities=21% Similarity=0.222 Sum_probs=90.7
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC--CCcccEEEEccc
Q 016351 77 FQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL--PEKVDVIISEWM 153 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~--~~~~D~Ivse~~ 153 (391)
.++.+|||||||+|.++..+++.+..+|+|+|++ .+++.|+++....++..+++++++|+.++++ +++||+|++..+
T Consensus 63 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~ 142 (298)
T 1ri5_A 63 KRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQFS 142 (298)
T ss_dssp CTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEESC
T ss_pred CCCCeEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccccccCCCCCcCEEEECch
Confidence 4678999999999999988888887689999999 9999999999988887779999999998765 378999998543
Q ss_pred ccc-ccCcchHHHHHHHHhccccCCeEEEccc
Q 016351 154 GYF-LLRESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 154 ~~~-~~~e~~l~~~l~~~~~~L~~gG~ii~~~ 184 (391)
.+. +.+......++..+.++|+|||.+++..
T Consensus 143 l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 174 (298)
T 1ri5_A 143 FHYAFSTSESLDIAQRNIARHLRPGGYFIMTV 174 (298)
T ss_dssp GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred hhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 222 2334567889999999999999998653
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A | Back alignment and structure |
|---|
Probab=99.57 E-value=1.2e-14 Score=129.30 Aligned_cols=108 Identities=15% Similarity=0.124 Sum_probs=88.0
Q ss_pred CCCCCEEEEECCcccHHHHHHHHcCC-CeEEEEech-HHHHHHHHHHHHcCCCC----cEEEEEcccccCCCC-CcccEE
Q 016351 76 HFQGKTVLDVGTGSGILAIWSAQAGA-RKVYAVEAT-KMSDHARTLVKANNLQD----VVEVIEGSVEDIVLP-EKVDVI 148 (391)
Q Consensus 76 ~~~~~~VLDlGcGtG~l~~~~a~~g~-~~V~avD~s-~~~~~a~~~~~~~~~~~----~v~~i~~d~~~~~~~-~~~D~I 148 (391)
..++.+|||||||+|.++..+++.+. .+|+|+|++ .+++.|+++++.+++.+ +++++++|+.....+ ++||+|
T Consensus 27 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v 106 (217)
T 3jwh_A 27 QSNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQDKRFHGYDAA 106 (217)
T ss_dssp HTTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSCCGGGCSCSEE
T ss_pred hcCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCcccccccCCCcCEE
Confidence 34678999999999999999999753 589999999 99999999998888764 699999999766544 789999
Q ss_pred EEccccccccCcchHHHHHHHHhccccCCeEEEccc
Q 016351 149 ISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 149 vse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~ 184 (391)
++..+.+.+. ...+..+++.+.++|+|||+++...
T Consensus 107 ~~~~~l~~~~-~~~~~~~l~~~~~~LkpgG~li~~~ 141 (217)
T 3jwh_A 107 TVIEVIEHLD-LSRLGAFERVLFEFAQPKIVIVTTP 141 (217)
T ss_dssp EEESCGGGCC-HHHHHHHHHHHHTTTCCSEEEEEEE
T ss_pred eeHHHHHcCC-HHHHHHHHHHHHHHcCCCEEEEEcc
Confidence 9855444432 2245788999999999999877543
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=2.9e-14 Score=134.27 Aligned_cols=109 Identities=16% Similarity=0.204 Sum_probs=93.1
Q ss_pred HHhcCC-CCCCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-Ccc
Q 016351 70 IFQNKH-HFQGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKV 145 (391)
Q Consensus 70 i~~~~~-~~~~~~VLDlGcGtG~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~-~~~ 145 (391)
+...+. ..++.+|||||||+|.++..+++. +. +|+|+|++ .+++.|+++++.+++.++++++.+|+.+++++ ++|
T Consensus 108 l~~~l~~~~~~~~vLDiGcG~G~~~~~la~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~f 186 (312)
T 3vc1_A 108 LMDHLGQAGPDDTLVDAGCGRGGSMVMAHRRFGS-RVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDTPFDKGAV 186 (312)
T ss_dssp HHTTSCCCCTTCEEEEESCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTTCE
T ss_pred HHHHhccCCCCCEEEEecCCCCHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhcCCCCCCCE
Confidence 445554 556789999999999999999988 66 79999999 99999999999999988899999999998766 899
Q ss_pred cEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 146 DVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 146 D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
|+|++..+.+.+ ....++..+.++|+|||.++..
T Consensus 187 D~V~~~~~l~~~----~~~~~l~~~~~~LkpgG~l~~~ 220 (312)
T 3vc1_A 187 TASWNNESTMYV----DLHDLFSEHSRFLKVGGRYVTI 220 (312)
T ss_dssp EEEEEESCGGGS----CHHHHHHHHHHHEEEEEEEEEE
T ss_pred eEEEECCchhhC----CHHHHHHHHHHHcCCCcEEEEE
Confidence 999995443333 2778999999999999999864
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=5.7e-15 Score=137.61 Aligned_cols=124 Identities=20% Similarity=0.194 Sum_probs=95.8
Q ss_pred hHhHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCC---CcEEEEEcc
Q 016351 60 RVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQ---DVVEVIEGS 135 (391)
Q Consensus 60 ~~r~~~~~~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~---~~v~~i~~d 135 (391)
..+.+.+.+.+...+...++.+|||||||+|.++..+++.|+ +|+|+|+| .|++.|++++...+.. .++.+..+|
T Consensus 39 ~~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d 117 (293)
T 3thr_A 39 RSRTAEYKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEEGF-SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEAN 117 (293)
T ss_dssp SCBCHHHHHHHHHHHHHTTCCEEEETTCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECC
T ss_pred cchHHHHHHHHHHHhcccCCCEEEEecCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHhhhhcccccccceeeEeecC
Confidence 445566666666665555778999999999999999999988 89999999 9999999887544332 248899999
Q ss_pred cccCC---CC-CcccEEEEc--ccccccc---CcchHHHHHHHHhccccCCeEEEccc
Q 016351 136 VEDIV---LP-EKVDVIISE--WMGYFLL---RESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 136 ~~~~~---~~-~~~D~Ivse--~~~~~~~---~e~~l~~~l~~~~~~L~~gG~ii~~~ 184 (391)
+.+++ ++ ++||+|+|. .+.+... ....+..++..+.++|+|||++++..
T Consensus 118 ~~~~~~~~~~~~~fD~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (293)
T 3thr_A 118 WLTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDH 175 (293)
T ss_dssp GGGHHHHSCCTTCEEEEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred hhhCccccccCCCeEEEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 98876 44 899999994 3333322 12347889999999999999998653
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.56 E-value=2.5e-14 Score=127.83 Aligned_cols=116 Identities=22% Similarity=0.272 Sum_probs=93.0
Q ss_pred hHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC
Q 016351 62 RMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV 140 (391)
Q Consensus 62 r~~~~~~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~ 140 (391)
+.+.+.+.+...+. ++.+|||||||+|.++..+++.+. +|+++|++ .+++.|+++.+.++ .+++++++|+.+++
T Consensus 24 ~~~~~~~~l~~~~~--~~~~vLDlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~~d~~~~~ 98 (227)
T 1ve3_A 24 RIETLEPLLMKYMK--KRGKVLDLACGVGGFSFLLEDYGF-EVVGVDISEDMIRKAREYAKSRE--SNVEFIVGDARKLS 98 (227)
T ss_dssp HHHHHHHHHHHSCC--SCCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT--CCCEEEECCTTSCC
T ss_pred HHHHHHHHHHHhcC--CCCeEEEEeccCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcC--CCceEEECchhcCC
Confidence 34455566666543 378999999999999999999987 89999999 99999999998877 44999999999877
Q ss_pred CC-CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 141 LP-EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 141 ~~-~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
++ ++||+|++..+.+. .+......++..+.++|+|||.++..
T Consensus 99 ~~~~~~D~v~~~~~~~~-~~~~~~~~~l~~~~~~L~~gG~l~~~ 141 (227)
T 1ve3_A 99 FEDKTFDYVIFIDSIVH-FEPLELNQVFKEVRRVLKPSGKFIMY 141 (227)
T ss_dssp SCTTCEEEEEEESCGGG-CCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCCCcEEEEEEcCchHh-CCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 65 78999999654222 22235678899999999999998865
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=2.9e-15 Score=140.20 Aligned_cols=106 Identities=18% Similarity=0.208 Sum_probs=86.3
Q ss_pred CCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCC--CcEEEEEcccccCCCCCcccEEEEcccc
Q 016351 78 QGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQ--DVVEVIEGSVEDIVLPEKVDVIISEWMG 154 (391)
Q Consensus 78 ~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~--~~v~~i~~d~~~~~~~~~~D~Ivse~~~ 154 (391)
++.+|||||||+|.++..+++.|. +|+|+|+| .+++.|++++...++. .+++++++|+.+++++++||+|++....
T Consensus 82 ~~~~vLDlGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~~ 160 (299)
T 3g2m_A 82 VSGPVLELAAGMGRLTFPFLDLGW-EVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFALDKRFGTVVISSGS 160 (299)
T ss_dssp CCSCEEEETCTTTTTHHHHHTTTC-CEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBCCCSCCEEEEEECHHH
T ss_pred CCCcEEEEeccCCHHHHHHHHcCC-eEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcCCcCCCcCEEEECCcc
Confidence 345899999999999999999986 79999999 9999999999887642 4599999999998878999999973211
Q ss_pred ccccCcchHHHHHHHHhccccCCeEEEccc
Q 016351 155 YFLLRESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 155 ~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~ 184 (391)
........+..++..+.++|+|||.+++..
T Consensus 161 ~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 190 (299)
T 3g2m_A 161 INELDEADRRGLYASVREHLEPGGKFLLSL 190 (299)
T ss_dssp HTTSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccCCHHHHHHHHHHHHHHcCCCcEEEEEe
Confidence 122222346788999999999999998753
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=3.9e-14 Score=123.84 Aligned_cols=107 Identities=20% Similarity=0.266 Sum_probs=89.8
Q ss_pred cCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEc
Q 016351 73 NKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISE 151 (391)
Q Consensus 73 ~~~~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~~D~Ivse 151 (391)
.+...++.+|||+|||+|.++..+++.+. +|+++|++ .+++.|+++++.+++.+ ++++.+|+.+++++++||+|++.
T Consensus 27 ~~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~-~~~~~~d~~~~~~~~~~D~v~~~ 104 (199)
T 2xvm_A 27 AVKVVKPGKTLDLGCGNGRNSLYLAANGY-DVDAWDKNAMSIANVERIKSIENLDN-LHTRVVDLNNLTFDRQYDFILST 104 (199)
T ss_dssp HTTTSCSCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHTCTT-EEEEECCGGGCCCCCCEEEEEEE
T ss_pred HhhccCCCeEEEEcCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHhCCCCC-cEEEEcchhhCCCCCCceEEEEc
Confidence 33445678999999999999999999876 89999999 99999999998888754 99999999988767899999996
Q ss_pred cccccccCcchHHHHHHHHhccccCCeEEEc
Q 016351 152 WMGYFLLRESMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 152 ~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~ 182 (391)
.+.+.+. ......++..+.++|+|||.++.
T Consensus 105 ~~l~~~~-~~~~~~~l~~~~~~L~~gG~l~~ 134 (199)
T 2xvm_A 105 VVLMFLE-AKTIPGLIANMQRCTKPGGYNLI 134 (199)
T ss_dssp SCGGGSC-GGGHHHHHHHHHHTEEEEEEEEE
T ss_pred chhhhCC-HHHHHHHHHHHHHhcCCCeEEEE
Confidence 5444443 23577899999999999999764
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=99.56 E-value=3.8e-14 Score=125.21 Aligned_cols=106 Identities=13% Similarity=0.166 Sum_probs=87.4
Q ss_pred HHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccC-CCCCcccE
Q 016351 70 IFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDI-VLPEKVDV 147 (391)
Q Consensus 70 i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~-~~~~~~D~ 147 (391)
+...+...++.+|||||||+|.+++.+++.+. +|+|+|++ .+++.|+++++.+++.++++++++|+.+. ....+||+
T Consensus 47 ~l~~l~~~~~~~vLDlGcG~G~~~~~la~~~~-~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~D~ 125 (204)
T 3njr_A 47 TLAALAPRRGELLWDIGGGSGSVSVEWCLAGG-RAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALADLPLPEA 125 (204)
T ss_dssp HHHHHCCCTTCEEEEETCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGTTSCCCSE
T ss_pred HHHhcCCCCCCEEEEecCCCCHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhcccCCCCCE
Confidence 33344456778999999999999999999954 89999999 99999999999999986799999999883 33368999
Q ss_pred EEEccccccccCcchHHHHHHHHhccccCCeEEEccc
Q 016351 148 IISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 148 Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~ 184 (391)
|++.. .+ ... ++..+.++|+|||+++...
T Consensus 126 v~~~~---~~----~~~-~l~~~~~~LkpgG~lv~~~ 154 (204)
T 3njr_A 126 VFIGG---GG----SQA-LYDRLWEWLAPGTRIVANA 154 (204)
T ss_dssp EEECS---CC----CHH-HHHHHHHHSCTTCEEEEEE
T ss_pred EEECC---cc----cHH-HHHHHHHhcCCCcEEEEEe
Confidence 99854 11 345 8999999999999998653
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=2.1e-14 Score=124.50 Aligned_cols=105 Identities=18% Similarity=0.164 Sum_probs=83.7
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC--CCCcccEEEEccc
Q 016351 77 FQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV--LPEKVDVIISEWM 153 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~--~~~~~D~Ivse~~ 153 (391)
.++.+|||+|||+|.++..+++.+. +|+|+|+| .|++.|+++++.+++ +++++++++..++. .+++||+|++++
T Consensus 21 ~~~~~vLDiGcG~G~~~~~la~~~~-~v~~vD~s~~~l~~a~~~~~~~~~-~~v~~~~~~~~~l~~~~~~~fD~v~~~~- 97 (185)
T 3mti_A 21 DDESIVVDATMGNGNDTAFLAGLSK-KVYAFDVQEQALGKTSQRLSDLGI-ENTELILDGHENLDHYVREPIRAAIFNL- 97 (185)
T ss_dssp CTTCEEEESCCTTSHHHHHHHTTSS-EEEEEESCHHHHHHHHHHHHHHTC-CCEEEEESCGGGGGGTCCSCEEEEEEEE-
T ss_pred CCCCEEEEEcCCCCHHHHHHHHhCC-EEEEEECCHHHHHHHHHHHHHcCC-CcEEEEeCcHHHHHhhccCCcCEEEEeC-
Confidence 4678999999999999999999854 89999999 999999999999998 55999998887752 247899999863
Q ss_pred ccccc-------CcchHHHHHHHHhccccCCeEEEccc
Q 016351 154 GYFLL-------RESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 154 ~~~~~-------~e~~l~~~l~~~~~~L~~gG~ii~~~ 184 (391)
+++.. .......++..+.++|||||.++...
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 135 (185)
T 3mti_A 98 GYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMI 135 (185)
T ss_dssp C-----------CHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEE
Confidence 22221 12234567888999999999988653
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.56 E-value=7e-15 Score=129.63 Aligned_cols=105 Identities=22% Similarity=0.333 Sum_probs=86.6
Q ss_pred CCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCC-CcEEEEEcccccCCC---CCc-ccEEEEc
Q 016351 78 QGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQ-DVVEVIEGSVEDIVL---PEK-VDVIISE 151 (391)
Q Consensus 78 ~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~-~~v~~i~~d~~~~~~---~~~-~D~Ivse 151 (391)
++.+|||+|||+|.+++.+++.++.+|+|+|+| .|++.|+++++.+++. ++++++++|+.++.. .++ ||+|+++
T Consensus 53 ~~~~vLDlGcGtG~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~ 132 (201)
T 2ift_A 53 HQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFLD 132 (201)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEEC
T ss_pred CCCeEEEcCCccCHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhhccCCCCCEEEEC
Confidence 568999999999999998888887789999999 9999999999999984 459999999987532 367 9999997
Q ss_pred cccccccCcchHHHHHHHH--hccccCCeEEEcccce
Q 016351 152 WMGYFLLRESMFDSVICAR--DRWLKPTGVMYPSHAR 186 (391)
Q Consensus 152 ~~~~~~~~e~~l~~~l~~~--~~~L~~gG~ii~~~~~ 186 (391)
+. +. ......++..+ .++|+|||.+++....
T Consensus 133 ~~-~~---~~~~~~~l~~~~~~~~LkpgG~l~i~~~~ 165 (201)
T 2ift_A 133 PP-FH---FNLAEQAISLLCENNWLKPNALIYVETEK 165 (201)
T ss_dssp CC-SS---SCHHHHHHHHHHHTTCEEEEEEEEEEEES
T ss_pred CC-CC---CccHHHHHHHHHhcCccCCCcEEEEEECC
Confidence 65 22 23566777777 7889999999865443
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.55 E-value=2.2e-14 Score=131.26 Aligned_cols=104 Identities=26% Similarity=0.295 Sum_probs=88.3
Q ss_pred CCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-CcccEEEEcc
Q 016351 75 HHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIISEW 152 (391)
Q Consensus 75 ~~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~-~~~D~Ivse~ 152 (391)
...++.+|||||||+|.++..+++.+. +|+|+|+| .|++.|+++++..++.+ ++++.+|+.+++++ ++||+|+|..
T Consensus 34 ~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~-v~~~~~d~~~l~~~~~~fD~V~~~~ 111 (260)
T 1vl5_A 34 ALKGNEEVLDVATGGGHVANAFAPFVK-KVVAFDLTEDILKVARAFIEGNGHQQ-VEYVQGDAEQMPFTDERFHIVTCRI 111 (260)
T ss_dssp TCCSCCEEEEETCTTCHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHTTCCS-EEEEECCC-CCCSCTTCEEEEEEES
T ss_pred CCCCCCEEEEEeCCCCHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHHHhcCCCc-eEEEEecHHhCCCCCCCEEEEEEhh
Confidence 345778999999999999999998876 89999999 99999999999888764 99999999998876 7999999954
Q ss_pred ccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 153 MGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 153 ~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
..+.+ .+...++.++.++|+|||.+++.
T Consensus 112 ~l~~~---~d~~~~l~~~~r~LkpgG~l~~~ 139 (260)
T 1vl5_A 112 AAHHF---PNPASFVSEAYRVLKKGGQLLLV 139 (260)
T ss_dssp CGGGC---SCHHHHHHHHHHHEEEEEEEEEE
T ss_pred hhHhc---CCHHHHHHHHHHHcCCCCEEEEE
Confidence 33333 35678999999999999999875
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A | Back alignment and structure |
|---|
Probab=99.55 E-value=1.6e-14 Score=128.78 Aligned_cols=106 Identities=16% Similarity=0.193 Sum_probs=86.4
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCC-CeEEEEech-HHHHHHHHHHHHcCCCC----cEEEEEcccccCCCC-CcccEEE
Q 016351 77 FQGKTVLDVGTGSGILAIWSAQAGA-RKVYAVEAT-KMSDHARTLVKANNLQD----VVEVIEGSVEDIVLP-EKVDVII 149 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~l~~~~a~~g~-~~V~avD~s-~~~~~a~~~~~~~~~~~----~v~~i~~d~~~~~~~-~~~D~Iv 149 (391)
.++.+|||||||+|.++..+++.+. .+|+|+|+| .+++.|++++..+++.+ +++++++|+.....+ ++||+|+
T Consensus 28 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~ 107 (219)
T 3jwg_A 28 VNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVYRDKRFSGYDAAT 107 (219)
T ss_dssp TTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSSCCGGGTTCSEEE
T ss_pred cCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCcccccccccCCCCEEE
Confidence 4678999999999999999998753 589999999 99999999998887764 699999999776554 7899999
Q ss_pred EccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 150 SEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 150 se~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
+..+.+.+. ...+..++..+.++|+|||+++..
T Consensus 108 ~~~~l~~~~-~~~~~~~l~~~~~~LkpgG~~i~~ 140 (219)
T 3jwg_A 108 VIEVIEHLD-ENRLQAFEKVLFEFTRPQTVIVST 140 (219)
T ss_dssp EESCGGGCC-HHHHHHHHHHHHTTTCCSEEEEEE
T ss_pred EHHHHHhCC-HHHHHHHHHHHHHhhCCCEEEEEc
Confidence 854434332 223568899999999999977644
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=99.55 E-value=6.4e-15 Score=130.09 Aligned_cols=104 Identities=13% Similarity=0.033 Sum_probs=82.0
Q ss_pred CCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcC-----------CCCcEEEEEcccccCCCC-
Q 016351 76 HFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANN-----------LQDVVEVIEGSVEDIVLP- 142 (391)
Q Consensus 76 ~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~-----------~~~~v~~i~~d~~~~~~~- 142 (391)
..++.+|||+|||+|..+..+++.|. +|+|||+| .|++.|+++..... ...+++++++|+.+++++
T Consensus 20 ~~~~~~vLD~GCG~G~~~~~la~~g~-~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~~~ 98 (203)
T 1pjz_A 20 VVPGARVLVPLCGKSQDMSWLSGQGY-HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARD 98 (203)
T ss_dssp CCTTCEEEETTTCCSHHHHHHHHHCC-EEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHHH
T ss_pred cCCCCEEEEeCCCCcHhHHHHHHCCC-eEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccCCccc
Confidence 34678999999999999999999988 89999999 99999988764310 023599999999998764
Q ss_pred -CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEE
Q 016351 143 -EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMY 181 (391)
Q Consensus 143 -~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii 181 (391)
++||+|++....+.+. ......++.++.++|||||.++
T Consensus 99 ~~~fD~v~~~~~l~~l~-~~~~~~~l~~~~r~LkpgG~~~ 137 (203)
T 1pjz_A 99 IGHCAAFYDRAAMIALP-ADMRERYVQHLEALMPQACSGL 137 (203)
T ss_dssp HHSEEEEEEESCGGGSC-HHHHHHHHHHHHHHSCSEEEEE
T ss_pred CCCEEEEEECcchhhCC-HHHHHHHHHHHHHHcCCCcEEE
Confidence 6899999854333332 2345678999999999999843
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.54 E-value=1.2e-14 Score=125.09 Aligned_cols=105 Identities=20% Similarity=0.159 Sum_probs=85.2
Q ss_pred CCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccC-C-CCCcccEEEEcc
Q 016351 76 HFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDI-V-LPEKVDVIISEW 152 (391)
Q Consensus 76 ~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~-~-~~~~~D~Ivse~ 152 (391)
..++.+|||+|||+|.++..+++.+..+|+|+|++ .+++.|+++++.+++.++++++.+|+.+. . .+++||+|++++
T Consensus 29 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~i~~~~ 108 (177)
T 2esr_A 29 YFNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDP 108 (177)
T ss_dssp CCCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECC
T ss_pred hcCCCeEEEeCCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHhhcCCCCEEEECC
Confidence 35678999999999999999999877799999999 99999999999999877899999999884 2 336799999975
Q ss_pred ccccccCcchHHHHHHHHh--ccccCCeEEEccc
Q 016351 153 MGYFLLRESMFDSVICARD--RWLKPTGVMYPSH 184 (391)
Q Consensus 153 ~~~~~~~e~~l~~~l~~~~--~~L~~gG~ii~~~ 184 (391)
.... .....++..+. ++|+|||++++..
T Consensus 109 ~~~~----~~~~~~~~~l~~~~~L~~gG~l~~~~ 138 (177)
T 2esr_A 109 PYAK----ETIVATIEALAAKNLLSEQVMVVCET 138 (177)
T ss_dssp SSHH----HHHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred CCCc----chHHHHHHHHHhCCCcCCCcEEEEEE
Confidence 4211 23445556665 9999999988653
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=99.54 E-value=5.7e-14 Score=131.14 Aligned_cols=107 Identities=22% Similarity=0.179 Sum_probs=91.1
Q ss_pred CCCCCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-CcccEEEEc
Q 016351 75 HHFQGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIISE 151 (391)
Q Consensus 75 ~~~~~~~VLDlGcGtG~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~-~~~D~Ivse 151 (391)
...++.+|||||||+|.++..+++. +. +|+|+|+| .+++.|+++.+..++.++++++++|+.+++++ ++||+|++.
T Consensus 79 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~ 157 (297)
T 2o57_A 79 VLQRQAKGLDLGAGYGGAARFLVRKFGV-SIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCEDNSYDFIWSQ 157 (297)
T ss_dssp CCCTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSCTTCEEEEEEE
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccCCCCCCCEeEEEec
Confidence 4567789999999999999999987 66 89999999 99999999999999888899999999998766 789999985
Q ss_pred cccccccCcchHHHHHHHHhccccCCeEEEcccc
Q 016351 152 WMGYFLLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 152 ~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~~ 185 (391)
.+.+.+ .....++..+.++|||||.+++...
T Consensus 158 ~~l~~~---~~~~~~l~~~~~~LkpgG~l~~~~~ 188 (297)
T 2o57_A 158 DAFLHS---PDKLKVFQECARVLKPRGVMAITDP 188 (297)
T ss_dssp SCGGGC---SCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred chhhhc---CCHHHHHHHHHHHcCCCeEEEEEEe
Confidence 433332 2467889999999999999986643
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A | Back alignment and structure |
|---|
Probab=99.54 E-value=7.1e-14 Score=127.76 Aligned_cols=134 Identities=20% Similarity=0.265 Sum_probs=98.2
Q ss_pred hhhhhhhhhhhHhhcCChHhHHHHHHHHHh-cCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHH
Q 016351 43 YFCTYAFLYHQKEMLSDRVRMDAYFNSIFQ-NKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLV 120 (391)
Q Consensus 43 ~~~~~~~~~~~~~ml~d~~r~~~~~~~i~~-~~~~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~ 120 (391)
.|+..+..|+.... ......+.+.+.+.. .....++.+|||||||+|.++..+++.+. +|+|+|+| .+++.|++++
T Consensus 4 ~~~~~a~~y~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~ 81 (263)
T 2yqz_A 4 ALLRAAYAYDRLRA-HPPEVAGQIATAMASAVHPKGEEPVFLELGVGTGRIALPLIARGY-RYIALDADAAMLEVFRQKI 81 (263)
T ss_dssp HHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHCCCSSSCCEEEEETCTTSTTHHHHHTTTC-EEEEEESCHHHHHHHHHHT
T ss_pred chHHHHHHHhhhcc-cChHHHHHHHHHHHHhhcCCCCCCEEEEeCCcCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHh
Confidence 45555555555332 233344445555533 22345678999999999999999998876 89999999 9999999887
Q ss_pred HHcCCCCcEEEEEcccccCCCC-CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 121 KANNLQDVVEVIEGSVEDIVLP-EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 121 ~~~~~~~~v~~i~~d~~~~~~~-~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
..+ ..+++++.+|+.+++++ ++||+|++..+.+.+ .+...++..+.++|+|||.++..
T Consensus 82 -~~~-~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~---~~~~~~l~~~~~~L~pgG~l~~~ 140 (263)
T 2yqz_A 82 -AGV-DRKVQVVQADARAIPLPDESVHGVIVVHLWHLV---PDWPKVLAEAIRVLKPGGALLEG 140 (263)
T ss_dssp -TTS-CTTEEEEESCTTSCCSCTTCEEEEEEESCGGGC---TTHHHHHHHHHHHEEEEEEEEEE
T ss_pred -hcc-CCceEEEEcccccCCCCCCCeeEEEECCchhhc---CCHHHHHHHHHHHCCCCcEEEEE
Confidence 322 34599999999988765 789999985433332 35678899999999999999876
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.54 E-value=2e-14 Score=127.24 Aligned_cols=117 Identities=16% Similarity=0.149 Sum_probs=91.3
Q ss_pred HHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC
Q 016351 63 MDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL 141 (391)
Q Consensus 63 ~~~~~~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~ 141 (391)
...+.+.+...+ .++.+|||+|||+|.++..+++.+..+|+++|++ .+++.|+++.... .+++++++|+.++++
T Consensus 29 ~~~~~~~l~~~~--~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~~---~~i~~~~~d~~~~~~ 103 (215)
T 2pxx_A 29 FSSFRALLEPEL--RPEDRILVLGCGNSALSYELFLGGFPNVTSVDYSSVVVAAMQACYAHV---PQLRWETMDVRKLDF 103 (215)
T ss_dssp HHHHHHHHGGGC--CTTCCEEEETCTTCSHHHHHHHTTCCCEEEEESCHHHHHHHHHHTTTC---TTCEEEECCTTSCCS
T ss_pred HHHHHHHHHHhc--CCCCeEEEECCCCcHHHHHHHHcCCCcEEEEeCCHHHHHHHHHhcccC---CCcEEEEcchhcCCC
Confidence 344566666654 4668899999999999999999987689999999 8999999887541 359999999998876
Q ss_pred C-CcccEEEEcccccccc------------CcchHHHHHHHHhccccCCeEEEccc
Q 016351 142 P-EKVDVIISEWMGYFLL------------RESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 142 ~-~~~D~Ivse~~~~~~~------------~e~~l~~~l~~~~~~L~~gG~ii~~~ 184 (391)
+ ++||+|++..+...+. +......++..+.++|+|||.++...
T Consensus 104 ~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~ 159 (215)
T 2pxx_A 104 PSASFDVVLEKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMT 159 (215)
T ss_dssp CSSCEEEEEEESHHHHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCcccEEEECcchhhhccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEe
Confidence 5 7899999865432222 12345788999999999999988653
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.54 E-value=9.4e-14 Score=122.41 Aligned_cols=108 Identities=20% Similarity=0.231 Sum_probs=89.2
Q ss_pred HHHhcCCCCCCCEEEEECCcccHHHHHHHHcC-CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-Ccc
Q 016351 69 SIFQNKHHFQGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKV 145 (391)
Q Consensus 69 ~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g-~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~-~~~ 145 (391)
.+...+...++.+|||+|||+|.++..+++.+ ..+|+++|++ .+++.|+++++.+++ ++++++++|+.+.... ++|
T Consensus 31 ~~l~~l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~~~ 109 (204)
T 3e05_A 31 VTLSKLRLQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVA-RNVTLVEAFAPEGLDDLPDP 109 (204)
T ss_dssp HHHHHTTCCTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTC-TTEEEEECCTTTTCTTSCCC
T ss_pred HHHHHcCCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeCChhhhhhcCCCC
Confidence 34444556678999999999999999999986 4589999999 999999999999988 4599999999765433 789
Q ss_pred cEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 146 DVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 146 D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
|+|++..... ....++..+.++|+|||+++..
T Consensus 110 D~i~~~~~~~------~~~~~l~~~~~~LkpgG~l~~~ 141 (204)
T 3e05_A 110 DRVFIGGSGG------MLEEIIDAVDRRLKSEGVIVLN 141 (204)
T ss_dssp SEEEESCCTT------CHHHHHHHHHHHCCTTCEEEEE
T ss_pred CEEEECCCCc------CHHHHHHHHHHhcCCCeEEEEE
Confidence 9999854321 4678899999999999999864
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=2.3e-14 Score=131.47 Aligned_cols=99 Identities=19% Similarity=0.221 Sum_probs=83.2
Q ss_pred CCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEcc-ccc
Q 016351 78 QGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEW-MGY 155 (391)
Q Consensus 78 ~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~~D~Ivse~-~~~ 155 (391)
++.+|||||||+|.++..+++.+. +|+|+|+| .+++.|+++.. +++++++|+.+++++++||+|+|.. +.+
T Consensus 50 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~------~~~~~~~d~~~~~~~~~fD~v~~~~~~l~ 122 (263)
T 3pfg_A 50 KAASLLDVACGTGMHLRHLADSFG-TVEGLELSADMLAIARRRNP------DAVLHHGDMRDFSLGRRFSAVTCMFSSIG 122 (263)
T ss_dssp TCCEEEEETCTTSHHHHHHTTTSS-EEEEEESCHHHHHHHHHHCT------TSEEEECCTTTCCCSCCEEEEEECTTGGG
T ss_pred CCCcEEEeCCcCCHHHHHHHHcCC-eEEEEECCHHHHHHHHhhCC------CCEEEECChHHCCccCCcCEEEEcCchhh
Confidence 568999999999999999999877 79999999 89999988653 3899999999987778999999953 333
Q ss_pred cccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 156 FLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 156 ~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
.+.....+..++..+.++|+|||.+++.
T Consensus 123 ~~~~~~~~~~~l~~~~~~L~pgG~l~i~ 150 (263)
T 3pfg_A 123 HLAGQAELDAALERFAAHVLPDGVVVVE 150 (263)
T ss_dssp GSCHHHHHHHHHHHHHHTEEEEEEEEEC
T ss_pred hcCCHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 3333345778899999999999999976
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=1.2e-13 Score=128.30 Aligned_cols=115 Identities=22% Similarity=0.237 Sum_probs=93.8
Q ss_pred HHHHHhcCCCCCCCEEEEECCcccHHHHHHHH-cCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCc
Q 016351 67 FNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQ-AGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEK 144 (391)
Q Consensus 67 ~~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~-~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~ 144 (391)
.+.+...+...++.+|||||||+|.++..+++ .|. +|+|+|+| .+++.|+++++..++.++++++.+|+.+++ ++
T Consensus 53 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~--~~ 129 (287)
T 1kpg_A 53 IDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKYDV-NVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFD--EP 129 (287)
T ss_dssp HHHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCC--CC
T ss_pred HHHHHHHcCCCCcCEEEEECCcccHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhhCC--CC
Confidence 34455555556778999999999999999884 576 89999999 999999999999888778999999998875 89
Q ss_pred ccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcccc
Q 016351 145 VDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 145 ~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~~ 185 (391)
||+|++..+.+.+.. .....++..+.++|||||.+++...
T Consensus 130 fD~v~~~~~l~~~~~-~~~~~~l~~~~~~LkpgG~l~~~~~ 169 (287)
T 1kpg_A 130 VDRIVSIGAFEHFGH-ERYDAFFSLAHRLLPADGVMLLHTI 169 (287)
T ss_dssp CSEEEEESCGGGTCT-TTHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred eeEEEEeCchhhcCh-HHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 999998544333322 3567889999999999999987644
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.53 E-value=2.3e-14 Score=124.10 Aligned_cols=104 Identities=19% Similarity=0.187 Sum_probs=85.2
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC-----CCcccEEEE
Q 016351 77 FQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL-----PEKVDVIIS 150 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~-----~~~~D~Ivs 150 (391)
.++.+|||+|||+|.++..+++.+..+|+|+|++ .+++.|+++++.+++.++++++++|+.+... .++||+|++
T Consensus 43 ~~~~~vLD~GcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~~ 122 (187)
T 2fhp_A 43 FDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVLL 122 (187)
T ss_dssp CSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred cCCCCEEEeCCccCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHhcCCCCCEEEE
Confidence 4678999999999999999888877799999999 8999999999999887779999999987432 478999999
Q ss_pred ccccccccCcchHHHHHHHH--hccccCCeEEEccc
Q 016351 151 EWMGYFLLRESMFDSVICAR--DRWLKPTGVMYPSH 184 (391)
Q Consensus 151 e~~~~~~~~e~~l~~~l~~~--~~~L~~gG~ii~~~ 184 (391)
++. +.. ......+..+ .++|+|||++++..
T Consensus 123 ~~~-~~~---~~~~~~~~~l~~~~~L~~gG~l~~~~ 154 (187)
T 2fhp_A 123 DPP-YAK---QEIVSQLEKMLERQLLTNEAVIVCET 154 (187)
T ss_dssp CCC-GGG---CCHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred CCC-CCc---hhHHHHHHHHHHhcccCCCCEEEEEe
Confidence 765 221 2344556665 89999999988653
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.53 E-value=4.2e-14 Score=131.36 Aligned_cols=102 Identities=20% Similarity=0.197 Sum_probs=89.1
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEccccc
Q 016351 77 FQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMGY 155 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~~D~Ivse~~~~ 155 (391)
.++.+|||+|||+|.++..+++.|. +|+|+|+| .+++.|++++..+++ +++++++|+.++...++||+|++..+.+
T Consensus 119 ~~~~~vLD~GcG~G~~~~~l~~~g~-~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~fD~i~~~~~~~ 195 (286)
T 3m70_A 119 ISPCKVLDLGCGQGRNSLYLSLLGY-DVTSWDHNENSIAFLNETKEKENL--NISTALYDINAANIQENYDFIVSTVVFM 195 (286)
T ss_dssp SCSCEEEEESCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCGGGCCCCSCEEEEEECSSGG
T ss_pred cCCCcEEEECCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHHcCC--ceEEEEeccccccccCCccEEEEccchh
Confidence 3678999999999999999999988 89999999 899999999999988 4999999999987778999999976555
Q ss_pred cccCcchHHHHHHHHhccccCCeEEEc
Q 016351 156 FLLRESMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 156 ~~~~e~~l~~~l~~~~~~L~~gG~ii~ 182 (391)
++.. ..+..++..+.++|+|||.+++
T Consensus 196 ~~~~-~~~~~~l~~~~~~LkpgG~l~i 221 (286)
T 3m70_A 196 FLNR-ERVPSIIKNMKEHTNVGGYNLI 221 (286)
T ss_dssp GSCG-GGHHHHHHHHHHTEEEEEEEEE
T ss_pred hCCH-HHHHHHHHHHHHhcCCCcEEEE
Confidence 4433 3567899999999999999775
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=4.6e-14 Score=125.26 Aligned_cols=103 Identities=17% Similarity=0.156 Sum_probs=82.7
Q ss_pred CCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEcccc
Q 016351 76 HFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMG 154 (391)
Q Consensus 76 ~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~~D~Ivse~~~ 154 (391)
..++.+|||||||+|.++..+++.+. +|+|+|++ .+++.|++ .+.. +++++++|+.++...++||+|++..+.
T Consensus 44 ~~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~~D~s~~~~~~a~~----~~~~-~~~~~~~d~~~~~~~~~~D~v~~~~~l 117 (218)
T 3ou2_A 44 GNIRGDVLELASGTGYWTRHLSGLAD-RVTALDGSAEMIAEAGR----HGLD-NVEFRQQDLFDWTPDRQWDAVFFAHWL 117 (218)
T ss_dssp TTSCSEEEEESCTTSHHHHHHHHHSS-EEEEEESCHHHHHHHGG----GCCT-TEEEEECCTTSCCCSSCEEEEEEESCG
T ss_pred CCCCCeEEEECCCCCHHHHHHHhcCC-eEEEEeCCHHHHHHHHh----cCCC-CeEEEecccccCCCCCceeEEEEechh
Confidence 34567999999999999999999977 89999999 89998887 4443 499999999998444899999995543
Q ss_pred ccccCcchHHHHHHHHhccccCCeEEEcccc
Q 016351 155 YFLLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 155 ~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~~ 185 (391)
+.+.. ..+..++..+.++|+|||.++....
T Consensus 118 ~~~~~-~~~~~~l~~~~~~L~pgG~l~~~~~ 147 (218)
T 3ou2_A 118 AHVPD-DRFEAFWESVRSAVAPGGVVEFVDV 147 (218)
T ss_dssp GGSCH-HHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hcCCH-HHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 43332 2257889999999999999986643
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.53 E-value=3.3e-14 Score=130.29 Aligned_cols=109 Identities=21% Similarity=0.305 Sum_probs=89.6
Q ss_pred CCCC-CCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC--C-CCcccEE
Q 016351 74 KHHF-QGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV--L-PEKVDVI 148 (391)
Q Consensus 74 ~~~~-~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~--~-~~~~D~I 148 (391)
.... ++.+|||+|||+|.+++.+++.+..+|+|+|++ .+++.|+++++.+++.++++++++|+.++. + .++||+|
T Consensus 44 ~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~~~~~~fD~I 123 (259)
T 3lpm_A 44 SYLPIRKGKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDLIPKERADIV 123 (259)
T ss_dssp CCCCSSCCEEEETTCTTTHHHHHHHTTCCCEEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGTSCTTCEEEE
T ss_pred hcCCCCCCEEEEcCCchhHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhhhccCCccEE
Confidence 3344 678999999999999999999876689999999 999999999999999988999999999875 2 4799999
Q ss_pred EEccccccc-----cC------------cchHHHHHHHHhccccCCeEEEc
Q 016351 149 ISEWMGYFL-----LR------------ESMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 149 vse~~~~~~-----~~------------e~~l~~~l~~~~~~L~~gG~ii~ 182 (391)
++++..+.. .. ...+..++..+.++|+|||+++.
T Consensus 124 i~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~ 174 (259)
T 3lpm_A 124 TCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANF 174 (259)
T ss_dssp EECCCC-----------------------HHHHHHHHHHHHHEEEEEEEEE
T ss_pred EECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEE
Confidence 998642221 00 02356789999999999999886
|
| >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 | Back alignment and structure |
|---|
Probab=99.53 E-value=3.9e-15 Score=136.90 Aligned_cols=109 Identities=18% Similarity=0.267 Sum_probs=83.4
Q ss_pred CCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCC----------------------------
Q 016351 75 HHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNL---------------------------- 125 (391)
Q Consensus 75 ~~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~---------------------------- 125 (391)
...++.+|||||||+|.++..+++.|+.+|+|+|+| .|++.|+++++.+..
T Consensus 52 ~~~~g~~vLDiGCG~G~~~~~~~~~~~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~ 131 (263)
T 2a14_A 52 GGLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKL 131 (263)
T ss_dssp TSCCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred CCCCCceEEEeCCCccHHHHHHHHhhhcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHH
Confidence 345678999999999999888888888789999999 999999987765421
Q ss_pred CCcEE-EEEcccccC-CC----CCcccEEEEccccccc-cCcchHHHHHHHHhccccCCeEEEcc
Q 016351 126 QDVVE-VIEGSVEDI-VL----PEKVDVIISEWMGYFL-LRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 126 ~~~v~-~i~~d~~~~-~~----~~~~D~Ivse~~~~~~-~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
...|+ ++++|+.+. ++ .++||+|++..+.+.. .....+..++..+.++|||||.+++.
T Consensus 132 ~~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~ 196 (263)
T 2a14_A 132 RAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTT 196 (263)
T ss_dssp HHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred HhhhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 11244 899999884 21 2689999996544332 22235677899999999999999876
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.53 E-value=2.8e-14 Score=130.37 Aligned_cols=131 Identities=12% Similarity=0.081 Sum_probs=89.8
Q ss_pred chhhhhhhhhhhhhHhhcCChHhHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHH
Q 016351 40 FANYFCTYAFLYHQKEMLSDRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHART 118 (391)
Q Consensus 40 ~~~~~~~~~~~~~~~~ml~d~~r~~~~~~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~ 118 (391)
....|+..+..+.+.....+ ...+.+.+...+...++.+|||||||+|.++..+++.|+ +|+|+|+| .|++.|++
T Consensus 10 ~a~~wd~~a~~f~~~~~~~~---~~~~~~~il~~l~l~~g~~VLDlGcGtG~~a~~La~~g~-~V~gvD~S~~ml~~Ar~ 85 (261)
T 3iv6_A 10 KAEAWELIGNQFWTIGRVAA---RPSDRENDIFLENIVPGSTVAVIGASTRFLIEKALERGA-SVTVFDFSQRMCDDLAE 85 (261)
T ss_dssp THHHHHTTTTHHHHTSCGGG---SCCHHHHHHHTTTCCTTCEEEEECTTCHHHHHHHHHTTC-EEEEEESCHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHhhccc---cHHHHHHHHHhcCCCCcCEEEEEeCcchHHHHHHHhcCC-EEEEEECCHHHHHHHHH
Confidence 34566666655544211111 122334455556667789999999999999999999987 89999999 99999999
Q ss_pred HHHHcCCCCcEEEEEcccccCCC------CCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 119 LVKANNLQDVVEVIEGSVEDIVL------PEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 119 ~~~~~~~~~~v~~i~~d~~~~~~------~~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
+++.+. ++.++.++.. .++||+|++..+.+.+.. ..+..++..+.++| |||+++++
T Consensus 86 ~~~~~~-------v~~~~~~~~~~~~~~~~~~fD~Vv~~~~l~~~~~-~~~~~~l~~l~~lL-PGG~l~lS 147 (261)
T 3iv6_A 86 ALADRC-------VTIDLLDITAEIPKELAGHFDFVLNDRLINRFTT-EEARRACLGMLSLV-GSGTVRAS 147 (261)
T ss_dssp HTSSSC-------CEEEECCTTSCCCGGGTTCCSEEEEESCGGGSCH-HHHHHHHHHHHHHH-TTSEEEEE
T ss_pred HHHhcc-------ceeeeeecccccccccCCCccEEEEhhhhHhCCH-HHHHHHHHHHHHhC-cCcEEEEE
Confidence 876541 2233333222 468999999654433332 24667888999999 99999865
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.53 E-value=1.1e-14 Score=135.93 Aligned_cols=107 Identities=19% Similarity=0.301 Sum_probs=82.9
Q ss_pred CCCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCC----------------------------
Q 016351 77 FQGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQ---------------------------- 126 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~---------------------------- 126 (391)
.++++|||||||+|.+++.+++. +..+|+|||++ .|++.|+++++..+..
T Consensus 45 ~~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (292)
T 3g07_A 45 FRGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRS 124 (292)
T ss_dssp TTTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC----------------------------------
T ss_pred cCCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhccccccccccccccccccccccccccc
Confidence 36789999999999999999987 55599999999 9999999987665432
Q ss_pred -----------------------------CcEEEEEcccccCC------CCCcccEEEEcccccccc---CcchHHHHHH
Q 016351 127 -----------------------------DVVEVIEGSVEDIV------LPEKVDVIISEWMGYFLL---RESMFDSVIC 168 (391)
Q Consensus 127 -----------------------------~~v~~i~~d~~~~~------~~~~~D~Ivse~~~~~~~---~e~~l~~~l~ 168 (391)
++|+|+++|+.... ..++||+|+|..+...+. ....+..++.
T Consensus 125 ~~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~~l~ 204 (292)
T 3g07_A 125 CFPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRMFR 204 (292)
T ss_dssp -----------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHHHHHHHHH
Confidence 56999999998654 347999999955432221 3335778999
Q ss_pred HHhccccCCeEEEcc
Q 016351 169 ARDRWLKPTGVMYPS 183 (391)
Q Consensus 169 ~~~~~L~~gG~ii~~ 183 (391)
.+.++|+|||++++.
T Consensus 205 ~~~~~LkpGG~lil~ 219 (292)
T 3g07_A 205 RIYRHLRPGGILVLE 219 (292)
T ss_dssp HHHHHEEEEEEEEEE
T ss_pred HHHHHhCCCcEEEEe
Confidence 999999999999865
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=3.9e-14 Score=129.25 Aligned_cols=104 Identities=16% Similarity=-0.003 Sum_probs=82.9
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHH----------cC------CCCcEEEEEcccccC
Q 016351 77 FQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKA----------NN------LQDVVEVIEGSVEDI 139 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~----------~~------~~~~v~~i~~d~~~~ 139 (391)
.++.+|||+|||+|..+..+++.|. +|+|||+| .|++.|+++... ++ ...+|+++++|+.++
T Consensus 67 ~~~~~vLD~GCG~G~~~~~La~~G~-~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~l 145 (252)
T 2gb4_A 67 QSGLRVFFPLCGKAIEMKWFADRGH-TVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFDL 145 (252)
T ss_dssp CCSCEEEETTCTTCTHHHHHHHTTC-EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTTG
T ss_pred CCCCeEEEeCCCCcHHHHHHHHCCC-eEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECccccC
Confidence 4678999999999999999999998 79999999 899999765431 00 123599999999998
Q ss_pred CCC--CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEc
Q 016351 140 VLP--EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 140 ~~~--~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~ 182 (391)
+.+ ++||+|++......+. ......++..+.++|||||+++.
T Consensus 146 ~~~~~~~FD~V~~~~~l~~l~-~~~~~~~l~~~~~~LkpGG~l~l 189 (252)
T 2gb4_A 146 PRANIGKFDRIWDRGALVAIN-PGDHDRYADIILSLLRKEFQYLV 189 (252)
T ss_dssp GGGCCCCEEEEEESSSTTTSC-GGGHHHHHHHHHHTEEEEEEEEE
T ss_pred CcccCCCEEEEEEhhhhhhCC-HHHHHHHHHHHHHHcCCCeEEEE
Confidence 764 7999999854433333 33567789999999999999863
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=3e-14 Score=132.00 Aligned_cols=102 Identities=18% Similarity=0.109 Sum_probs=88.1
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEccccc
Q 016351 77 FQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMGY 155 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~~D~Ivse~~~~ 155 (391)
.++.+|||+|||+|.+++.+++.++.+|+|+|+| .+++.|+++++.|++.++++++++|+.++...++||+|++++...
T Consensus 124 ~~~~~VLDlgcG~G~~~~~la~~~~~~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~~~~fD~Vi~~~p~~ 203 (278)
T 2frn_A 124 KPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMGYVVR 203 (278)
T ss_dssp CTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEECCCSS
T ss_pred CCCCEEEEecccCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcccCCccEEEECCchh
Confidence 3578999999999999999999987689999999 999999999999999988999999999987678999999976421
Q ss_pred cccCcchHHHHHHHHhccccCCeEEEcccc
Q 016351 156 FLLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 156 ~~~~e~~l~~~l~~~~~~L~~gG~ii~~~~ 185 (391)
...++..+.++|+|||.++....
T Consensus 204 -------~~~~l~~~~~~LkpgG~l~~~~~ 226 (278)
T 2frn_A 204 -------THEFIPKALSIAKDGAIIHYHNT 226 (278)
T ss_dssp -------GGGGHHHHHHHEEEEEEEEEEEE
T ss_pred -------HHHHHHHHHHHCCCCeEEEEEEe
Confidence 13467778889999999986543
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A | Back alignment and structure |
|---|
Probab=99.52 E-value=2.7e-14 Score=129.21 Aligned_cols=98 Identities=20% Similarity=0.284 Sum_probs=81.7
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEccccc
Q 016351 77 FQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMGY 155 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~~D~Ivse~~~~ 155 (391)
.++.+|||||||+|.++..+++.+. +|+|+|+| .+++.|+++... +++++++|+.++..+++||+|++..+.+
T Consensus 41 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~~-----~v~~~~~d~~~~~~~~~fD~v~~~~~l~ 114 (250)
T 2p7i_A 41 FRPGNLLELGSFKGDFTSRLQEHFN-DITCVEASEEAISHAQGRLKD-----GITYIHSRFEDAQLPRRYDNIVLTHVLE 114 (250)
T ss_dssp CCSSCEEEESCTTSHHHHHHTTTCS-CEEEEESCHHHHHHHHHHSCS-----CEEEEESCGGGCCCSSCEEEEEEESCGG
T ss_pred cCCCcEEEECCCCCHHHHHHHHhCC-cEEEEeCCHHHHHHHHHhhhC-----CeEEEEccHHHcCcCCcccEEEEhhHHH
Confidence 4667899999999999999999887 79999999 899999887643 4999999999985458999999854333
Q ss_pred cccCcchHHHHHHHHh-ccccCCeEEEcc
Q 016351 156 FLLRESMFDSVICARD-RWLKPTGVMYPS 183 (391)
Q Consensus 156 ~~~~e~~l~~~l~~~~-~~L~~gG~ii~~ 183 (391)
++ .+...++.++. ++|+|||.++..
T Consensus 115 ~~---~~~~~~l~~~~~~~LkpgG~l~i~ 140 (250)
T 2p7i_A 115 HI---DDPVALLKRINDDWLAEGGRLFLV 140 (250)
T ss_dssp GC---SSHHHHHHHHHHTTEEEEEEEEEE
T ss_pred hh---cCHHHHHHHHHHHhcCCCCEEEEE
Confidence 33 34678999999 999999998864
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=1.3e-13 Score=130.00 Aligned_cols=115 Identities=17% Similarity=0.155 Sum_probs=94.8
Q ss_pred HHHHHhcCCCCCCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCc
Q 016351 67 FNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEK 144 (391)
Q Consensus 67 ~~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~ 144 (391)
.+.+...+...++.+|||||||+|.++..+++. |. +|+|+|+| .+++.|+++++..++.++++++.+|+.+++ ++
T Consensus 79 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~ 155 (318)
T 2fk8_A 79 VDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFDV-NVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFA--EP 155 (318)
T ss_dssp HHHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCC--CC
T ss_pred HHHHHHhcCCCCcCEEEEEcccchHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHCC--CC
Confidence 344555555667889999999999999999987 77 89999999 999999999999998888999999998874 78
Q ss_pred ccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcccc
Q 016351 145 VDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 145 ~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~~ 185 (391)
||+|++..+.+.+.. ..+..++..+.++|+|||.+++...
T Consensus 156 fD~v~~~~~l~~~~~-~~~~~~l~~~~~~LkpgG~l~~~~~ 195 (318)
T 2fk8_A 156 VDRIVSIEAFEHFGH-ENYDDFFKRCFNIMPADGRMTVQSS 195 (318)
T ss_dssp CSEEEEESCGGGTCG-GGHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred cCEEEEeChHHhcCH-HHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 999998544333322 3577899999999999999986543
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.52 E-value=6.9e-14 Score=127.27 Aligned_cols=113 Identities=19% Similarity=0.272 Sum_probs=91.0
Q ss_pred HHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-Ccc
Q 016351 68 NSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKV 145 (391)
Q Consensus 68 ~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~-~~~ 145 (391)
..+...+...++.+|||||||+|.++..+++.+..+|+++|++ .+++.|++++... .+++++++|+.+++++ ++|
T Consensus 83 ~~~l~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~---~~~~~~~~d~~~~~~~~~~f 159 (254)
T 1xtp_A 83 RNFIASLPGHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGM---PVGKFILASMETATLPPNTY 159 (254)
T ss_dssp HHHHHTSTTCCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTS---SEEEEEESCGGGCCCCSSCE
T ss_pred HHHHHhhcccCCCEEEEECCCcCHHHHHHHHhhcCEEEEEeCCHHHHHHHHHHhccC---CceEEEEccHHHCCCCCCCe
Confidence 4444455555778999999999999999998876689999999 8999999887654 4599999999998765 789
Q ss_pred cEEEEccccccccCcchHHHHHHHHhccccCCeEEEccc
Q 016351 146 DVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 146 D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~ 184 (391)
|+|++..+.+.+.. ..+..++..+.++|+|||.+++..
T Consensus 160 D~v~~~~~l~~~~~-~~~~~~l~~~~~~LkpgG~l~i~~ 197 (254)
T 1xtp_A 160 DLIVIQWTAIYLTD-ADFVKFFKHCQQALTPNGYIFFKE 197 (254)
T ss_dssp EEEEEESCGGGSCH-HHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEEEcchhhhCCH-HHHHHHHHHHHHhcCCCeEEEEEe
Confidence 99999554333322 357788999999999999998754
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.52 E-value=2.1e-14 Score=130.02 Aligned_cols=105 Identities=20% Similarity=0.249 Sum_probs=85.6
Q ss_pred CCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-CcccEEEEccccc
Q 016351 78 QGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIISEWMGY 155 (391)
Q Consensus 78 ~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~-~~~D~Ivse~~~~ 155 (391)
++.+|||||||+|.++..+++.+..+|+++|++ .+++.|++++..++ ..+++++.+|+.++.++ ++||+|++..+.+
T Consensus 79 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~ 157 (241)
T 2ex4_A 79 GTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEG-KRVRNYFCCGLQDFTPEPDSYDVIWIQWVIG 157 (241)
T ss_dssp CCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGG-GGEEEEEECCGGGCCCCSSCEEEEEEESCGG
T ss_pred CCCEEEEECCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHhhhcC-CceEEEEEcChhhcCCCCCCEEEEEEcchhh
Confidence 578999999999999999888876689999999 99999999887764 23599999999988766 5899999865433
Q ss_pred cccCcchHHHHHHHHhccccCCeEEEccc
Q 016351 156 FLLRESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 156 ~~~~e~~l~~~l~~~~~~L~~gG~ii~~~ 184 (391)
.+.. ..+..++..+.++|+|||++++..
T Consensus 158 ~~~~-~~~~~~l~~~~~~LkpgG~l~i~~ 185 (241)
T 2ex4_A 158 HLTD-QHLAEFLRRCKGSLRPNGIIVIKD 185 (241)
T ss_dssp GSCH-HHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hCCH-HHHHHHHHHHHHhcCCCeEEEEEE
Confidence 3322 235678999999999999998653
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=99.52 E-value=3.1e-14 Score=128.59 Aligned_cols=109 Identities=19% Similarity=0.295 Sum_probs=88.3
Q ss_pred HHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-Cccc
Q 016351 69 SIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVD 146 (391)
Q Consensus 69 ~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~-~~~D 146 (391)
.+...+...++.+|||||||+|.++..+++.+..+|+|+|++ .+++.|+++... .+++++++|+.+++++ ++||
T Consensus 34 ~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~----~~~~~~~~d~~~~~~~~~~fD 109 (243)
T 3bkw_A 34 ALRAMLPEVGGLRIVDLGCGFGWFCRWAHEHGASYVLGLDLSEKMLARARAAGPD----TGITYERADLDKLHLPQDSFD 109 (243)
T ss_dssp HHHHHSCCCTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHTSCS----SSEEEEECCGGGCCCCTTCEE
T ss_pred HHHHhccccCCCEEEEEcCcCCHHHHHHHHCCCCeEEEEcCCHHHHHHHHHhccc----CCceEEEcChhhccCCCCCce
Confidence 455556556789999999999999999999887689999999 899998876543 2499999999998765 7899
Q ss_pred EEEEccccccccCcchHHHHHHHHhccccCCeEEEccc
Q 016351 147 VIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 147 ~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~ 184 (391)
+|++..+.+.+ .....++..+.++|+|||.+++..
T Consensus 110 ~v~~~~~l~~~---~~~~~~l~~~~~~L~pgG~l~~~~ 144 (243)
T 3bkw_A 110 LAYSSLALHYV---EDVARLFRTVHQALSPGGHFVFST 144 (243)
T ss_dssp EEEEESCGGGC---SCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEEecccccc---chHHHHHHHHHHhcCcCcEEEEEe
Confidence 99985432222 356788999999999999998653
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=6.5e-14 Score=127.62 Aligned_cols=99 Identities=17% Similarity=0.134 Sum_probs=85.5
Q ss_pred CCCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC----CCcccEEEE
Q 016351 77 FQGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL----PEKVDVIIS 150 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~----~~~~D~Ivs 150 (391)
.++.+|||||||+|.+++.++.. +..+|+++|++ .+++.|+++++.+++.+ |+++++|+.++.. .++||+|+|
T Consensus 79 ~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l~~-v~~~~~d~~~~~~~~~~~~~fD~I~s 157 (249)
T 3g89_A 79 QGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLKG-ARALWGRAEVLAREAGHREAYARAVA 157 (249)
T ss_dssp CSSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSS-EEEEECCHHHHTTSTTTTTCEEEEEE
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCc-eEEEECcHHHhhcccccCCCceEEEE
Confidence 45689999999999999999887 45589999999 99999999999999977 9999999998754 278999999
Q ss_pred ccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 151 EWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 151 e~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
..+. .+..++..+.++|+|||+++..
T Consensus 158 ~a~~-------~~~~ll~~~~~~LkpgG~l~~~ 183 (249)
T 3g89_A 158 RAVA-------PLCVLSELLLPFLEVGGAAVAM 183 (249)
T ss_dssp ESSC-------CHHHHHHHHGGGEEEEEEEEEE
T ss_pred CCcC-------CHHHHHHHHHHHcCCCeEEEEE
Confidence 6532 3578899999999999998853
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=1.8e-13 Score=126.43 Aligned_cols=103 Identities=19% Similarity=0.244 Sum_probs=85.6
Q ss_pred cCCCCCCCEEEEECCcccHHH-HHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEE
Q 016351 73 NKHHFQGKTVLDVGTGSGILA-IWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVII 149 (391)
Q Consensus 73 ~~~~~~~~~VLDlGcGtG~l~-~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~~D~Iv 149 (391)
.....++.+|||||||+|.++ +.+++. |+ +|+|||++ .|++.|+++++..++ ++|+++++|+.+++ .++||+|+
T Consensus 117 la~l~~g~rVLDIGcG~G~~ta~~lA~~~ga-~V~gIDis~~~l~~Ar~~~~~~gl-~~v~~v~gDa~~l~-d~~FDvV~ 193 (298)
T 3fpf_A 117 LGRFRRGERAVFIGGGPLPLTGILLSHVYGM-RVNVVEIEPDIAELSRKVIEGLGV-DGVNVITGDETVID-GLEFDVLM 193 (298)
T ss_dssp HTTCCTTCEEEEECCCSSCHHHHHHHHTTCC-EEEEEESSHHHHHHHHHHHHHHTC-CSEEEEESCGGGGG-GCCCSEEE
T ss_pred HcCCCCcCEEEEECCCccHHHHHHHHHccCC-EEEEEECCHHHHHHHHHHHHhcCC-CCeEEEECchhhCC-CCCcCEEE
Confidence 345567899999999998665 566765 55 89999999 999999999999998 77999999999875 57999999
Q ss_pred EccccccccCcchHHHHHHHHhccccCCeEEEccc
Q 016351 150 SEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 150 se~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~ 184 (391)
+... ......+++++.+.|||||+++...
T Consensus 194 ~~a~------~~d~~~~l~el~r~LkPGG~Lvv~~ 222 (298)
T 3fpf_A 194 VAAL------AEPKRRVFRNIHRYVDTETRIIYRT 222 (298)
T ss_dssp ECTT------CSCHHHHHHHHHHHCCTTCEEEEEE
T ss_pred ECCC------ccCHHHHHHHHHHHcCCCcEEEEEc
Confidence 7543 1346788999999999999998643
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.52 E-value=8.1e-14 Score=128.61 Aligned_cols=116 Identities=16% Similarity=0.256 Sum_probs=94.4
Q ss_pred HHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcC-CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC
Q 016351 65 AYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP 142 (391)
Q Consensus 65 ~~~~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g-~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~ 142 (391)
.+.+.+.......++.+|||||||+|.++..+++.+ ..+|+++|++ .+++.|++++..+++.+ ++++.+|+.+++++
T Consensus 24 ~l~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-~~~~~~d~~~~~~~ 102 (276)
T 3mgg_A 24 TLEKLLHHDTVYPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKN-VKFLQANIFSLPFE 102 (276)
T ss_dssp HHHHHHHTTCCCCTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCCS-EEEEECCGGGCCSC
T ss_pred HHHHHHhhcccCCCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCC-cEEEEcccccCCCC
Confidence 344455555545678999999999999999999884 3489999999 99999999999988865 99999999998765
Q ss_pred -CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEccc
Q 016351 143 -EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 143 -~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~ 184 (391)
++||+|++..+.+.+ .+...++..+.++|+|||.+++..
T Consensus 103 ~~~fD~v~~~~~l~~~---~~~~~~l~~~~~~L~pgG~l~~~~ 142 (276)
T 3mgg_A 103 DSSFDHIFVCFVLEHL---QSPEEALKSLKKVLKPGGTITVIE 142 (276)
T ss_dssp TTCEEEEEEESCGGGC---SCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCeeEEEEechhhhc---CCHHHHHHHHHHHcCCCcEEEEEE
Confidence 899999985543333 345688999999999999988654
|
| >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.52 E-value=4.8e-14 Score=127.68 Aligned_cols=98 Identities=18% Similarity=0.182 Sum_probs=84.2
Q ss_pred CCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC----CCcccEEEEc
Q 016351 78 QGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL----PEKVDVIISE 151 (391)
Q Consensus 78 ~~~~VLDlGcGtG~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~----~~~~D~Ivse 151 (391)
++.+|||||||+|.+++.+++. ...+|+|+|+| .|++.|+++++.+++.+ |+++++|+.++.. .++||+|+|.
T Consensus 70 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~~~~~~fD~V~~~ 148 (240)
T 1xdz_A 70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLEN-TTFCHDRAETFGQRKDVRESYDIVTAR 148 (240)
T ss_dssp GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSS-EEEEESCHHHHTTCTTTTTCEEEEEEE
T ss_pred CCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCC-EEEEeccHHHhcccccccCCccEEEEe
Confidence 5689999999999999998864 34489999999 99999999999999876 9999999988764 3789999995
Q ss_pred cccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 152 WMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 152 ~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
.+ ..+..++..+.++|+|||.++..
T Consensus 149 ~~-------~~~~~~l~~~~~~LkpgG~l~~~ 173 (240)
T 1xdz_A 149 AV-------ARLSVLSELCLPLVKKNGLFVAL 173 (240)
T ss_dssp CC-------SCHHHHHHHHGGGEEEEEEEEEE
T ss_pred cc-------CCHHHHHHHHHHhcCCCCEEEEE
Confidence 52 24678899999999999999864
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.51 E-value=2.3e-14 Score=134.56 Aligned_cols=122 Identities=14% Similarity=0.104 Sum_probs=97.0
Q ss_pred HhHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHH--HcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccc
Q 016351 61 VRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSA--QAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVE 137 (391)
Q Consensus 61 ~r~~~~~~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a--~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~ 137 (391)
.+...|.+.+... ..++.+|||||||+|.++..++ .....+|+|+|++ .+++.|++++..+++.++++++++|+.
T Consensus 103 ~~~~~~~~~l~~~--l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 180 (305)
T 3ocj_A 103 ERHGHFRRALQRH--LRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAW 180 (305)
T ss_dssp HHHHHHHHHHHHH--CCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGG
T ss_pred HHHHHHHHHHHhh--CCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchh
Confidence 3444455555443 3467899999999999999885 3344589999999 999999999999999888999999999
Q ss_pred cCCCCCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEccc
Q 016351 138 DIVLPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 138 ~~~~~~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~ 184 (391)
+++++++||+|++..+.+++........++..+.++|+|||++++..
T Consensus 181 ~~~~~~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 227 (305)
T 3ocj_A 181 KLDTREGYDLLTSNGLNIYEPDDARVTELYRRFWQALKPGGALVTSF 227 (305)
T ss_dssp GCCCCSCEEEEECCSSGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEC
T ss_pred cCCccCCeEEEEECChhhhcCCHHHHHHHHHHHHHhcCCCeEEEEEe
Confidence 98877999999996654444443344568999999999999998754
|
| >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.51 E-value=2.4e-14 Score=126.24 Aligned_cols=103 Identities=14% Similarity=0.196 Sum_probs=83.3
Q ss_pred CCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccC-CC-CCcccEEEEcccc
Q 016351 78 QGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDI-VL-PEKVDVIISEWMG 154 (391)
Q Consensus 78 ~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~-~~-~~~~D~Ivse~~~ 154 (391)
++.+|||+|||+|.+++.+++.++.+|+|+|++ .|++.|+++++.+++ ++++++++|+.++ .. .++||+|++++.
T Consensus 54 ~~~~vLDlgcG~G~~~~~l~~~~~~~V~~vD~s~~~l~~a~~~~~~~~~-~~v~~~~~D~~~~~~~~~~~fD~V~~~~p- 131 (202)
T 2fpo_A 54 VDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKA-GNARVVNSNAMSFLAQKGTPHNIVFVDPP- 131 (202)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTC-CSEEEECSCHHHHHSSCCCCEEEEEECCS-
T ss_pred CCCeEEEeCCCcCHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEECCHHHHHhhcCCCCCEEEECCC-
Confidence 568999999999999999888887799999999 999999999999998 4599999999873 33 368999999765
Q ss_pred ccccCcchHHHHHHHHh--ccccCCeEEEcccc
Q 016351 155 YFLLRESMFDSVICARD--RWLKPTGVMYPSHA 185 (391)
Q Consensus 155 ~~~~~e~~l~~~l~~~~--~~L~~gG~ii~~~~ 185 (391)
+. ......++..+. ++|+|||++++...
T Consensus 132 ~~---~~~~~~~l~~l~~~~~L~pgG~l~i~~~ 161 (202)
T 2fpo_A 132 FR---RGLLEETINLLEDNGWLADEALIYVESE 161 (202)
T ss_dssp SS---TTTHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred CC---CCcHHHHHHHHHhcCccCCCcEEEEEEC
Confidence 22 223455666664 56999999886543
|
| >4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} | Back alignment and structure |
|---|
Probab=99.51 E-value=2e-14 Score=131.54 Aligned_cols=125 Identities=23% Similarity=0.179 Sum_probs=84.3
Q ss_pred hhhhhhhhhhhhhHhhcCChHhHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHH
Q 016351 41 ANYFCTYAFLYHQKEMLSDRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTL 119 (391)
Q Consensus 41 ~~~~~~~~~~~~~~~ml~d~~r~~~~~~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~ 119 (391)
.++|+..+..|... . ...-..+.+.|..... .+.+|||||||+|.++..+++.+. +|+|||+| .|++.|++.
T Consensus 8 ~d~F~~~a~~Y~~~---R-p~yp~~l~~~l~~~~~--~~~~vLDvGcGtG~~~~~l~~~~~-~v~gvD~s~~ml~~a~~~ 80 (257)
T 4hg2_A 8 KDHFTPVADAYRAF---R-PRYPRALFRWLGEVAP--ARGDALDCGCGSGQASLGLAEFFE-RVHAVDPGEAQIRQALRH 80 (257)
T ss_dssp ------------CC---C-CCCCHHHHHHHHHHSS--CSSEEEEESCTTTTTHHHHHTTCS-EEEEEESCHHHHHTCCCC
T ss_pred HHHHHHHHHHHHHH---C-CCcHHHHHHHHHHhcC--CCCCEEEEcCCCCHHHHHHHHhCC-EEEEEeCcHHhhhhhhhc
Confidence 34555555555431 1 0001334455555432 347899999999999999999886 89999999 898877531
Q ss_pred HHHcCCCCcEEEEEcccccCCCC-CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 120 VKANNLQDVVEVIEGSVEDIVLP-EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 120 ~~~~~~~~~v~~i~~d~~~~~~~-~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
.+|+++++|+++++++ ++||+|+|....+.. ..+.++.++.|+|||||+++..
T Consensus 81 -------~~v~~~~~~~e~~~~~~~sfD~v~~~~~~h~~----~~~~~~~e~~rvLkpgG~l~~~ 134 (257)
T 4hg2_A 81 -------PRVTYAVAPAEDTGLPPASVDVAIAAQAMHWF----DLDRFWAELRRVARPGAVFAAV 134 (257)
T ss_dssp -------TTEEEEECCTTCCCCCSSCEEEEEECSCCTTC----CHHHHHHHHHHHEEEEEEEEEE
T ss_pred -------CCceeehhhhhhhcccCCcccEEEEeeehhHh----hHHHHHHHHHHHcCCCCEEEEE
Confidence 3499999999999887 899999994433322 3667899999999999998754
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=8.5e-14 Score=125.91 Aligned_cols=104 Identities=22% Similarity=0.349 Sum_probs=88.8
Q ss_pred CCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-CcccEEEEcc
Q 016351 75 HHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIISEW 152 (391)
Q Consensus 75 ~~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~-~~~D~Ivse~ 152 (391)
...++.+|||||||+|.++..+++.+. +|+++|++ .+++.|+++++.+++.+ ++++++|+.+++++ ++||+|++..
T Consensus 18 ~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~~~fD~v~~~~ 95 (239)
T 1xxl_A 18 ECRAEHRVLDIGAGAGHTALAFSPYVQ-ECIGVDATKEMVEVASSFAQEKGVEN-VRFQQGTAESLPFPDDSFDIITCRY 95 (239)
T ss_dssp TCCTTCEEEEESCTTSHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHHTCCS-EEEEECBTTBCCSCTTCEEEEEEES
T ss_pred CcCCCCEEEEEccCcCHHHHHHHHhCC-EEEEEECCHHHHHHHHHHHHHcCCCC-eEEEecccccCCCCCCcEEEEEECC
Confidence 346778999999999999999998876 89999999 99999999999888764 99999999998766 7899999954
Q ss_pred ccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 153 MGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 153 ~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
+.+.+ .++..++..+.++|+|||.+++.
T Consensus 96 ~l~~~---~~~~~~l~~~~~~LkpgG~l~~~ 123 (239)
T 1xxl_A 96 AAHHF---SDVRKAVREVARVLKQDGRFLLV 123 (239)
T ss_dssp CGGGC---SCHHHHHHHHHHHEEEEEEEEEE
T ss_pred chhhc---cCHHHHHHHHHHHcCCCcEEEEE
Confidence 33332 35678899999999999998865
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.51 E-value=6.1e-14 Score=124.18 Aligned_cols=128 Identities=20% Similarity=0.213 Sum_probs=95.7
Q ss_pred cchhhhhhhhhhhhhHhhcCChHhHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHH
Q 016351 39 DFANYFCTYAFLYHQKEMLSDRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHAR 117 (391)
Q Consensus 39 ~~~~~~~~~~~~~~~~~ml~d~~r~~~~~~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~ 117 (391)
....+|+..+..|.. .... ...+ ..+...+ .++.+|||||||+|.++..+++.+. +|+|+|++ .+++.|+
T Consensus 12 ~~~~~~~~~~~~y~~---~~~~--~~~~-~~~~~~~--~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~ 82 (211)
T 3e23_A 12 DTLRFYRGNATAYAE---RQPR--SATL-TKFLGEL--PAGAKILELGCGAGYQAEAMLAAGF-DVDATDGSPELAAEAS 82 (211)
T ss_dssp HHHHHHHHSHHHHTT---CCCC--CHHH-HHHHTTS--CTTCEEEESSCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhh---ccch--hHHH-HHHHHhc--CCCCcEEEECCCCCHHHHHHHHcCC-eEEEECCCHHHHHHHH
Confidence 345677776666654 2211 2222 2333332 3578999999999999999999977 89999999 8999998
Q ss_pred HHHHHcCCCCcEEEEEcccccCCCCCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 118 TLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 118 ~~~~~~~~~~~v~~i~~d~~~~~~~~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
++. .++++.+|+.+++..++||+|++..+.+.+. ...+..++..+.++|+|||+++..
T Consensus 83 ~~~-------~~~~~~~d~~~~~~~~~fD~v~~~~~l~~~~-~~~~~~~l~~~~~~LkpgG~l~~~ 140 (211)
T 3e23_A 83 RRL-------GRPVRTMLFHQLDAIDAYDAVWAHACLLHVP-RDELADVLKLIWRALKPGGLFYAS 140 (211)
T ss_dssp HHH-------TSCCEECCGGGCCCCSCEEEEEECSCGGGSC-HHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred Hhc-------CCceEEeeeccCCCCCcEEEEEecCchhhcC-HHHHHHHHHHHHHhcCCCcEEEEE
Confidence 876 2788899999988668999999955433333 225678899999999999999875
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=99.51 E-value=2e-14 Score=128.07 Aligned_cols=101 Identities=23% Similarity=0.296 Sum_probs=82.1
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEccccc
Q 016351 77 FQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMGY 155 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~~D~Ivse~~~~ 155 (391)
.++.+|||||||+|.++..+++.+. +|+|+|++ .+++.|+++.. .+++++.+|+.+++.+++||+|++..+.+
T Consensus 44 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~-----~~~~~~~~d~~~~~~~~~fD~v~~~~~l~ 117 (220)
T 3hnr_A 44 KSFGNVLEFGVGTGNLTNKLLLAGR-TVYGIEPSREMRMIAKEKLP-----KEFSITEGDFLSFEVPTSIDTIVSTYAFH 117 (220)
T ss_dssp TCCSEEEEECCTTSHHHHHHHHTTC-EEEEECSCHHHHHHHHHHSC-----TTCCEESCCSSSCCCCSCCSEEEEESCGG
T ss_pred cCCCeEEEeCCCCCHHHHHHHhCCC-eEEEEeCCHHHHHHHHHhCC-----CceEEEeCChhhcCCCCCeEEEEECcchh
Confidence 3678999999999999999999876 89999999 89999988764 34899999999987768999999954433
Q ss_pred cccCcchHHHHHHHHhccccCCeEEEccc
Q 016351 156 FLLRESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 156 ~~~~e~~l~~~l~~~~~~L~~gG~ii~~~ 184 (391)
.+... ....++..+.++|+|||.+++..
T Consensus 118 ~~~~~-~~~~~l~~~~~~LkpgG~l~i~~ 145 (220)
T 3hnr_A 118 HLTDD-EKNVAIAKYSQLLNKGGKIVFAD 145 (220)
T ss_dssp GSCHH-HHHHHHHHHHHHSCTTCEEEEEE
T ss_pred cCChH-HHHHHHHHHHHhcCCCCEEEEEe
Confidence 33221 12338999999999999998753
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=4.3e-14 Score=127.60 Aligned_cols=107 Identities=24% Similarity=0.278 Sum_probs=85.3
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccC--CCC-CcccEEEEcc
Q 016351 77 FQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDI--VLP-EKVDVIISEW 152 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~--~~~-~~~D~Ivse~ 152 (391)
.++.+|||||||+|.++..+++.+..+|+|+|+| .|++.|+++.+.++ .+++++++|+.++ +++ ++||+|+++.
T Consensus 59 ~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~fD~V~~d~ 136 (236)
T 1zx0_A 59 SKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQT--HKVIPLKGLWEDVAPTLPDGHFDGILYDT 136 (236)
T ss_dssp TTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCS--SEEEEEESCHHHHGGGSCTTCEEEEEECC
T ss_pred CCCCeEEEEeccCCHHHHHHHhcCCCeEEEEcCCHHHHHHHHHHHHhcC--CCeEEEecCHHHhhcccCCCceEEEEECC
Confidence 4678999999999999999988776689999999 99999999887766 4599999999987 565 7899999943
Q ss_pred ccc--cccCcchHHHHHHHHhccccCCeEEEcccc
Q 016351 153 MGY--FLLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 153 ~~~--~~~~e~~l~~~l~~~~~~L~~gG~ii~~~~ 185 (391)
... ..........++.++.++|||||++++...
T Consensus 137 ~~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~ 171 (236)
T 1zx0_A 137 YPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNL 171 (236)
T ss_dssp CCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECCH
T ss_pred cccchhhhhhhhHHHHHHHHHHhcCCCeEEEEEec
Confidence 221 111222345778999999999999986544
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.50 E-value=3.3e-14 Score=125.04 Aligned_cols=97 Identities=18% Similarity=0.228 Sum_probs=81.1
Q ss_pred CCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-CcccEEEEcccccc
Q 016351 79 GKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIISEWMGYF 156 (391)
Q Consensus 79 ~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~-~~~D~Ivse~~~~~ 156 (391)
+.+|||||||+|.++..+++.|. +|+|+|++ .|++.|+++. .+++++++|+.+++++ ++||+|++..+.+.
T Consensus 42 ~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~------~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 114 (203)
T 3h2b_A 42 DGVILDVGSGTGRWTGHLASLGH-QIEGLEPATRLVELARQTH------PSVTFHHGTITDLSDSPKRWAGLLAWYSLIH 114 (203)
T ss_dssp CSCEEEETCTTCHHHHHHHHTTC-CEEEECCCHHHHHHHHHHC------TTSEEECCCGGGGGGSCCCEEEEEEESSSTT
T ss_pred CCeEEEecCCCCHHHHHHHhcCC-eEEEEeCCHHHHHHHHHhC------CCCeEEeCcccccccCCCCeEEEEehhhHhc
Confidence 67899999999999999999987 79999999 8999988762 2389999999998765 89999999544333
Q ss_pred ccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 157 LLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 157 ~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
+.. ..+..++..+.++|+|||.+++.
T Consensus 115 ~~~-~~~~~~l~~~~~~L~pgG~l~i~ 140 (203)
T 3h2b_A 115 MGP-GELPDALVALRMAVEDGGGLLMS 140 (203)
T ss_dssp CCT-TTHHHHHHHHHHTEEEEEEEEEE
T ss_pred CCH-HHHHHHHHHHHHHcCCCcEEEEE
Confidence 332 35778999999999999999865
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=3.1e-14 Score=128.75 Aligned_cols=105 Identities=25% Similarity=0.287 Sum_probs=85.8
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC--CC-CcccEEEEcc
Q 016351 77 FQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV--LP-EKVDVIISEW 152 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~--~~-~~~D~Ivse~ 152 (391)
.++.+|||||||+|..+..+++.+..+|++||++ .+++.|+++++..+.. ++++.+|..++. ++ ++||.|+.+.
T Consensus 59 ~~G~rVLdiG~G~G~~~~~~~~~~~~~v~~id~~~~~~~~a~~~~~~~~~~--~~~~~~~a~~~~~~~~~~~FD~i~~D~ 136 (236)
T 3orh_A 59 SKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTHK--VIPLKGLWEDVAPTLPDGHFDGILYDT 136 (236)
T ss_dssp TTCEEEEEECCTTSHHHHHHTTSCEEEEEEEECCHHHHHHHHHHGGGCSSE--EEEEESCHHHHGGGSCTTCEEEEEECC
T ss_pred cCCCeEEEECCCccHHHHHHHHhCCcEEEEEeCCHHHHHHHHHHHhhCCCc--eEEEeehHHhhcccccccCCceEEEee
Confidence 4678999999999999999998865689999999 9999999998877653 899999987653 33 7899999876
Q ss_pred ccc--cccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 153 MGY--FLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 153 ~~~--~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
+.. ...+..+...+++++.|+|||||++++.
T Consensus 137 ~~~~~~~~~~~~~~~~~~e~~rvLkPGG~l~f~ 169 (236)
T 3orh_A 137 YPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYC 169 (236)
T ss_dssp CCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEEC
T ss_pred eecccchhhhcchhhhhhhhhheeCCCCEEEEE
Confidence 432 2334445778899999999999999865
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.50 E-value=2.4e-13 Score=127.09 Aligned_cols=113 Identities=18% Similarity=0.229 Sum_probs=89.8
Q ss_pred HHHHHHhcCCCCCCCEEEEECCcccHHHHHHHH--cCCCeEEEEech-HHHHHHHHHHHHc-CCCCcEEEEEcccccCCC
Q 016351 66 YFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQ--AGARKVYAVEAT-KMSDHARTLVKAN-NLQDVVEVIEGSVEDIVL 141 (391)
Q Consensus 66 ~~~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~--~g~~~V~avD~s-~~~~~a~~~~~~~-~~~~~v~~i~~d~~~~~~ 141 (391)
+.+.|..... .++.+|||||||+|.++..+++ .+..+|+|+|+| .+++.|+++++.. +...+++++++|+.++++
T Consensus 25 ~~~~l~~~~~-~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~ 103 (299)
T 3g5t_A 25 FYKMIDEYHD-GERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFKF 103 (299)
T ss_dssp HHHHHHHHCC-SCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCGG
T ss_pred HHHHHHHHhc-CCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCCc
Confidence 3444544432 4678999999999999999996 345589999999 9999999999887 455669999999998764
Q ss_pred C-------CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 142 P-------EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 142 ~-------~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
+ ++||+|++..+.+.+ ++..++..+.++|+|||.+++.
T Consensus 104 ~~~~~~~~~~fD~V~~~~~l~~~----~~~~~l~~~~~~LkpgG~l~i~ 148 (299)
T 3g5t_A 104 LGADSVDKQKIDMITAVECAHWF----DFEKFQRSAYANLRKDGTIAIW 148 (299)
T ss_dssp GCTTTTTSSCEEEEEEESCGGGS----CHHHHHHHHHHHEEEEEEEEEE
T ss_pred cccccccCCCeeEEeHhhHHHHh----CHHHHHHHHHHhcCCCcEEEEE
Confidence 3 589999995543333 5778999999999999999864
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.50 E-value=7.9e-14 Score=124.05 Aligned_cols=107 Identities=30% Similarity=0.309 Sum_probs=89.4
Q ss_pred cCCCCCCCEEEEECCcccHHHHHHHHcC--CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-CcccEE
Q 016351 73 NKHHFQGKTVLDVGTGSGILAIWSAQAG--ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVI 148 (391)
Q Consensus 73 ~~~~~~~~~VLDlGcGtG~l~~~~a~~g--~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~-~~~D~I 148 (391)
.+...++.+|||+|||+|.++..+++.+ ..+|+|+|++ .+++.|++++..+++. +++++.+|+.++.++ ++||+|
T Consensus 32 ~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~~~~~~~fD~v 110 (219)
T 3dh0_A 32 EFGLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLK-NVEVLKSEENKIPLPDNTVDFI 110 (219)
T ss_dssp HHTCCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCT-TEEEEECBTTBCSSCSSCEEEE
T ss_pred HhCCCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCC-cEEEEecccccCCCCCCCeeEE
Confidence 3344567899999999999999999885 3489999999 9999999999998887 499999999998766 789999
Q ss_pred EEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 149 ISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 149 vse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
++..+.+.+ .....++..+.++|+|||.+++.
T Consensus 111 ~~~~~l~~~---~~~~~~l~~~~~~LkpgG~l~i~ 142 (219)
T 3dh0_A 111 FMAFTFHEL---SEPLKFLEELKRVAKPFAYLAII 142 (219)
T ss_dssp EEESCGGGC---SSHHHHHHHHHHHEEEEEEEEEE
T ss_pred Eeehhhhhc---CCHHHHHHHHHHHhCCCeEEEEE
Confidence 985443333 34678899999999999999865
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 | Back alignment and structure |
|---|
Probab=99.49 E-value=2.4e-13 Score=117.94 Aligned_cols=114 Identities=19% Similarity=0.240 Sum_probs=91.8
Q ss_pred HHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCC-cEEEEEcccccCCCCCcc
Q 016351 68 NSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQD-VVEVIEGSVEDIVLPEKV 145 (391)
Q Consensus 68 ~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~-~v~~i~~d~~~~~~~~~~ 145 (391)
+.+...+...++.+|||+|||+|.++..+++.+. +|+++|++ .+++.|++++..+++.+ +++++.+|+.+...+++|
T Consensus 42 ~~l~~~~~~~~~~~vLdiG~G~G~~~~~~~~~~~-~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 120 (194)
T 1dus_A 42 KILVENVVVDKDDDILDLGCGYGVIGIALADEVK-STTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVKDRKY 120 (194)
T ss_dssp HHHHHHCCCCTTCEEEEETCTTSHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCTTSCE
T ss_pred HHHHHHcccCCCCeEEEeCCCCCHHHHHHHHcCC-eEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhcccccCCc
Confidence 3344444555778999999999999999998844 89999999 99999999999998876 699999999885445789
Q ss_pred cEEEEccccccccCcchHHHHHHHHhccccCCeEEEccc
Q 016351 146 DVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 146 D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~ 184 (391)
|+|+++...+. .......++..+.++|+|||.+++..
T Consensus 121 D~v~~~~~~~~--~~~~~~~~l~~~~~~L~~gG~l~~~~ 157 (194)
T 1dus_A 121 NKIITNPPIRA--GKEVLHRIIEEGKELLKDNGEIWVVI 157 (194)
T ss_dssp EEEEECCCSTT--CHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred eEEEECCCccc--chhHHHHHHHHHHHHcCCCCEEEEEE
Confidence 99999653221 12356788999999999999988653
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.49 E-value=3.8e-14 Score=127.69 Aligned_cols=105 Identities=15% Similarity=0.070 Sum_probs=87.7
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEccccc
Q 016351 77 FQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMGY 155 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~~D~Ivse~~~~ 155 (391)
.++.+|||||||+|.++..+++.+. +|+|+|+| .+++.|++++...+...+++++++|+.++...++||+|++..+.+
T Consensus 65 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~l~ 143 (235)
T 3lcc_A 65 LPLGRALVPGCGGGHDVVAMASPER-FVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWRPTELFDLIFDYVFFC 143 (235)
T ss_dssp SCCEEEEEETCTTCHHHHHHCBTTE-EEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCCCSSCEEEEEEESSTT
T ss_pred CCCCCEEEeCCCCCHHHHHHHhCCC-eEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCCCCCCeeEEEEChhhh
Confidence 3456999999999999999988776 79999999 999999999887666667999999999987668999999855444
Q ss_pred cccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 156 FLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 156 ~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
.+. ......++..+.++|+|||.++..
T Consensus 144 ~~~-~~~~~~~l~~~~~~LkpgG~l~~~ 170 (235)
T 3lcc_A 144 AIE-PEMRPAWAKSMYELLKPDGELITL 170 (235)
T ss_dssp TSC-GGGHHHHHHHHHHHEEEEEEEEEE
T ss_pred cCC-HHHHHHHHHHHHHHCCCCcEEEEE
Confidence 433 235778899999999999998864
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A | Back alignment and structure |
|---|
Probab=99.49 E-value=1.8e-13 Score=127.18 Aligned_cols=107 Identities=18% Similarity=0.215 Sum_probs=89.0
Q ss_pred CCCCCCEEEEECCcccHHHHHHHHc-C-CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEc
Q 016351 75 HHFQGKTVLDVGTGSGILAIWSAQA-G-ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISE 151 (391)
Q Consensus 75 ~~~~~~~VLDlGcGtG~l~~~~a~~-g-~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~~D~Ivse 151 (391)
...++.+|||||||+|.++..+++. + ..+|+|+|+| .+++.|++++...+. +++++++|+.+++++++||+|++.
T Consensus 19 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~~~~~fD~v~~~ 96 (284)
T 3gu3_A 19 KITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPY--DSEFLEGDATEIELNDKYDIAICH 96 (284)
T ss_dssp CCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSS--EEEEEESCTTTCCCSSCEEEEEEE
T ss_pred ccCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCC--ceEEEEcchhhcCcCCCeeEEEEC
Confidence 4456789999999999999999987 2 2489999999 899999999887765 599999999998877899999996
Q ss_pred cccccccCcchHHHHHHHHhccccCCeEEEcccce
Q 016351 152 WMGYFLLRESMFDSVICARDRWLKPTGVMYPSHAR 186 (391)
Q Consensus 152 ~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~~~ 186 (391)
.+.+.+ .+...++..+.++|+|||.++.....
T Consensus 97 ~~l~~~---~~~~~~l~~~~~~LkpgG~l~~~~~~ 128 (284)
T 3gu3_A 97 AFLLHM---TTPETMLQKMIHSVKKGGKIICFEPH 128 (284)
T ss_dssp SCGGGC---SSHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred ChhhcC---CCHHHHHHHHHHHcCCCCEEEEEecc
Confidence 543333 35678999999999999999866544
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.1e-13 Score=121.12 Aligned_cols=107 Identities=17% Similarity=0.184 Sum_probs=86.5
Q ss_pred CCCCEEEEECCcccHHHHHHHHc--CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC--CCCcccEEEEc
Q 016351 77 FQGKTVLDVGTGSGILAIWSAQA--GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV--LPEKVDVIISE 151 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~l~~~~a~~--g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~--~~~~~D~Ivse 151 (391)
.++.+|||+|||+|.++..+++. +..+|+|+|++ .+++.|+++++.+++.++++++++|+.++. .+++||+|+++
T Consensus 21 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~ 100 (197)
T 3eey_A 21 KEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDCPVKAVMFN 100 (197)
T ss_dssp CTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTCCSCEEEEEEE
T ss_pred CCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhccCCceEEEEc
Confidence 46789999999999999999887 34589999999 999999999999998777999999998874 34899999986
Q ss_pred cccc------cccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 152 WMGY------FLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 152 ~~~~------~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
.... ..........++..+.++|+|||++++.
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~ 138 (197)
T 3eey_A 101 LGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVV 138 (197)
T ss_dssp ESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEE
Confidence 5210 1111123456899999999999998864
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=1.6e-13 Score=125.60 Aligned_cols=113 Identities=20% Similarity=0.293 Sum_probs=90.5
Q ss_pred HHHHhcCCCCCCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-Cc
Q 016351 68 NSIFQNKHHFQGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EK 144 (391)
Q Consensus 68 ~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~-~~ 144 (391)
+.+...+...++.+|||||||+|.++..+++. +. +|+|+|+| .+++.|+++.... .+++++++|+.+++++ ++
T Consensus 45 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~---~~~~~~~~d~~~~~~~~~~ 120 (266)
T 3ujc_A 45 KKILSDIELNENSKVLDIGSGLGGGCMYINEKYGA-HTHGIDICSNIVNMANERVSGN---NKIIFEANDILTKEFPENN 120 (266)
T ss_dssp HHHTTTCCCCTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHTCCSC---TTEEEEECCTTTCCCCTTC
T ss_pred HHHHHhcCCCCCCEEEEECCCCCHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHhhcC---CCeEEEECccccCCCCCCc
Confidence 44555555567789999999999999999987 65 89999999 8999998876654 4599999999998775 89
Q ss_pred ccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcccc
Q 016351 145 VDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 145 ~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~~ 185 (391)
||+|++..+.+.+. ......++..+.++|+|||.+++...
T Consensus 121 fD~v~~~~~l~~~~-~~~~~~~l~~~~~~L~pgG~l~~~~~ 160 (266)
T 3ujc_A 121 FDLIYSRDAILALS-LENKNKLFQKCYKWLKPTGTLLITDY 160 (266)
T ss_dssp EEEEEEESCGGGSC-HHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EEEEeHHHHHHhcC-hHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence 99999954333332 14678899999999999999987643
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.6e-13 Score=121.44 Aligned_cols=102 Identities=21% Similarity=0.235 Sum_probs=80.8
Q ss_pred HHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-Ccc
Q 016351 68 NSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKV 145 (391)
Q Consensus 68 ~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~-~~~ 145 (391)
+.+..... ++.+|||||||+|.++..+ +..+|+|+|++ .+++.|+++. .+++++++|+.+++++ ++|
T Consensus 28 ~~l~~~~~--~~~~vLdiG~G~G~~~~~l---~~~~v~~vD~s~~~~~~a~~~~------~~~~~~~~d~~~~~~~~~~f 96 (211)
T 2gs9_A 28 RALKGLLP--PGESLLEVGAGTGYWLRRL---PYPQKVGVEPSEAMLAVGRRRA------PEATWVRAWGEALPFPGESF 96 (211)
T ss_dssp HHHHTTCC--CCSEEEEETCTTCHHHHHC---CCSEEEEECCCHHHHHHHHHHC------TTSEEECCCTTSCCSCSSCE
T ss_pred HHHHHhcC--CCCeEEEECCCCCHhHHhC---CCCeEEEEeCCHHHHHHHHHhC------CCcEEEEcccccCCCCCCcE
Confidence 34444432 7789999999999998877 55589999999 8999988776 2389999999988765 689
Q ss_pred cEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 146 DVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 146 D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
|+|++..+.+. -.....++..+.++|+|||.+++.
T Consensus 97 D~v~~~~~l~~---~~~~~~~l~~~~~~L~pgG~l~i~ 131 (211)
T 2gs9_A 97 DVVLLFTTLEF---VEDVERVLLEARRVLRPGGALVVG 131 (211)
T ss_dssp EEEEEESCTTT---CSCHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEEEEcChhhh---cCCHHHHHHHHHHHcCCCCEEEEE
Confidence 99998543222 235678999999999999998865
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.6e-13 Score=123.02 Aligned_cols=106 Identities=19% Similarity=0.231 Sum_probs=88.3
Q ss_pred CCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCC----CcEEEEEcccccCCCC-CcccEEEEc
Q 016351 78 QGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQ----DVVEVIEGSVEDIVLP-EKVDVIISE 151 (391)
Q Consensus 78 ~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~----~~v~~i~~d~~~~~~~-~~~D~Ivse 151 (391)
++.+|||+|||+|.++..+++.+. +|+|+|++ .+++.|++++..+++. ++++++.+|+.+++++ ++||+|++.
T Consensus 30 ~~~~vLdiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~ 108 (235)
T 3sm3_A 30 EDDEILDIGCGSGKISLELASKGY-SVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFAVMQ 108 (235)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSCTTCEEEEEEE
T ss_pred CCCeEEEECCCCCHHHHHHHhCCC-eEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCCCCCceeEEEEc
Confidence 678999999999999999999977 89999999 8999999998887763 3589999999998765 789999996
Q ss_pred cccccccCcchHHHHHHHHhccccCCeEEEccc
Q 016351 152 WMGYFLLRESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 152 ~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~ 184 (391)
.+.+.+........++..+.++|+|||.++...
T Consensus 109 ~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 141 (235)
T 3sm3_A 109 AFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVE 141 (235)
T ss_dssp SCGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred chhhcCCCHHHHHHHHHHHHHHcCCCeEEEEEE
Confidence 544444333334478999999999999998653
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=99.47 E-value=3e-13 Score=120.65 Aligned_cols=109 Identities=18% Similarity=0.149 Sum_probs=89.7
Q ss_pred HHHhcCCCCCCCEEEEECCcccHHHHHHHHcC-CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCC-cc
Q 016351 69 SIFQNKHHFQGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPE-KV 145 (391)
Q Consensus 69 ~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g-~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~-~~ 145 (391)
++...+ .++.+|||||||+|.+++.+++.+ +.+|+|+|++ .+++.|+++++.+++.++|+++++|..+...++ +|
T Consensus 14 ~i~~~v--~~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~~~~~~~ 91 (230)
T 3lec_A 14 KVANYV--PKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAFEEADNI 91 (230)
T ss_dssp HHHTTS--CTTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCC
T ss_pred HHHHhC--CCCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhcccccccc
Confidence 354443 356899999999999999999987 4589999999 899999999999999999999999998876553 79
Q ss_pred cEEEEccccccccCcchHHHHHHHHhccccCCeEEEccc
Q 016351 146 DVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 146 D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~ 184 (391)
|+|+...|+. ..+..++......|+++|.+|.+.
T Consensus 92 D~IviaGmGg-----~lI~~IL~~~~~~l~~~~~lIlqp 125 (230)
T 3lec_A 92 DTITICGMGG-----RLIADILNNDIDKLQHVKTLVLQP 125 (230)
T ss_dssp CEEEEEEECH-----HHHHHHHHHTGGGGTTCCEEEEEE
T ss_pred CEEEEeCCch-----HHHHHHHHHHHHHhCcCCEEEEEC
Confidence 9988644332 246678888888999999888654
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.47 E-value=2.6e-13 Score=121.40 Aligned_cols=118 Identities=8% Similarity=0.193 Sum_probs=92.1
Q ss_pred HHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHc-C-CCeEEEEech-HHHHHHHHHHHHcCCC-CcEEEEEcccccC
Q 016351 64 DAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQA-G-ARKVYAVEAT-KMSDHARTLVKANNLQ-DVVEVIEGSVEDI 139 (391)
Q Consensus 64 ~~~~~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~-g-~~~V~avD~s-~~~~~a~~~~~~~~~~-~~v~~i~~d~~~~ 139 (391)
..+...+.......++.+|||||||+|..++.++++ + ..+|+++|++ .+++.|+++++.+++. ++|+++++|+.++
T Consensus 42 ~~~l~~l~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~ 121 (221)
T 3dr5_A 42 GQLLTTLAATTNGNGSTGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDV 121 (221)
T ss_dssp HHHHHHHHHHSCCTTCCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHH
T ss_pred HHHHHHHHHhhCCCCCCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHH
Confidence 344444444433333459999999999999999985 2 3589999999 9999999999999998 7899999998775
Q ss_pred --CC-CCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEccccee
Q 016351 140 --VL-PEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHARM 187 (391)
Q Consensus 140 --~~-~~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~~~~ 187 (391)
.+ .++||+|+++.. ......+++.+.++|+|||+++.....+
T Consensus 122 l~~~~~~~fD~V~~d~~------~~~~~~~l~~~~~~LkpGG~lv~dn~~~ 166 (221)
T 3dr5_A 122 MSRLANDSYQLVFGQVS------PMDLKALVDAAWPLLRRGGALVLADALL 166 (221)
T ss_dssp GGGSCTTCEEEEEECCC------TTTHHHHHHHHHHHEEEEEEEEETTTTG
T ss_pred HHHhcCCCcCeEEEcCc------HHHHHHHHHHHHHHcCCCcEEEEeCCCC
Confidence 23 478999998642 1235668889999999999999866543
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=99.47 E-value=3.9e-13 Score=118.43 Aligned_cols=108 Identities=29% Similarity=0.321 Sum_probs=89.4
Q ss_pred HHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCc
Q 016351 66 YFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEK 144 (391)
Q Consensus 66 ~~~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~ 144 (391)
..+.+...+ .++.+|||+|||+|.++..+++.+..+|+|+|++ .+++.|+++++.+++.+ ++++++|+.+.. +++
T Consensus 50 ~~~~l~~~~--~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~-~~~ 125 (205)
T 3grz_A 50 AMLGIERAM--VKPLTVADVGTGSGILAIAAHKLGAKSVLATDISDESMTAAEENAALNGIYD-IALQKTSLLADV-DGK 125 (205)
T ss_dssp HHHHHHHHC--SSCCEEEEETCTTSHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCC-CEEEESSTTTTC-CSC
T ss_pred HHHHHHHhc--cCCCEEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCc-eEEEeccccccC-CCC
Confidence 334444432 3678999999999999999999887799999999 99999999999999887 999999998753 489
Q ss_pred ccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 145 VDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 145 ~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
||+|+++.... .+..++..+.++|+|||++++.
T Consensus 126 fD~i~~~~~~~------~~~~~l~~~~~~L~~gG~l~~~ 158 (205)
T 3grz_A 126 FDLIVANILAE------ILLDLIPQLDSHLNEDGQVIFS 158 (205)
T ss_dssp EEEEEEESCHH------HHHHHGGGSGGGEEEEEEEEEE
T ss_pred ceEEEECCcHH------HHHHHHHHHHHhcCCCCEEEEE
Confidence 99999965322 2567889999999999998863
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.47 E-value=1.7e-13 Score=120.76 Aligned_cols=98 Identities=20% Similarity=0.299 Sum_probs=85.0
Q ss_pred CCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEccccc
Q 016351 78 QGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMGY 155 (391)
Q Consensus 78 ~~~~VLDlGcGtG~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~~D~Ivse~~~~ 155 (391)
++.+|||+|||+|.++..+++. +..+|+++|++ .+++.|+++++.+++.+ ++++++|+.++...++||+|++..+
T Consensus 65 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~~~D~i~~~~~-- 141 (207)
T 1jsx_A 65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLEN-IEPVQSRVEEFPSEPPFDGVISRAF-- 141 (207)
T ss_dssp CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSS-EEEEECCTTTSCCCSCEEEEECSCS--
T ss_pred CCCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCC-eEEEecchhhCCccCCcCEEEEecc--
Confidence 4789999999999999999886 34589999999 89999999999999877 9999999998764578999998542
Q ss_pred cccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 156 FLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 156 ~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
..+..++..+.++|+|||.+++.
T Consensus 142 -----~~~~~~l~~~~~~L~~gG~l~~~ 164 (207)
T 1jsx_A 142 -----ASLNDMVSWCHHLPGEQGRFYAL 164 (207)
T ss_dssp -----SSHHHHHHHHTTSEEEEEEEEEE
T ss_pred -----CCHHHHHHHHHHhcCCCcEEEEE
Confidence 23568899999999999998875
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.47 E-value=3.3e-13 Score=121.53 Aligned_cols=110 Identities=18% Similarity=0.248 Sum_probs=85.9
Q ss_pred HHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCC
Q 016351 65 AYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPE 143 (391)
Q Consensus 65 ~~~~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~ 143 (391)
.+.+.+.... .++.+|||||||+|.++..+++.+. +|+|+|+| .+++.|+++. .+++++++|+.+++.++
T Consensus 29 ~~~~~l~~~~--~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~~D~s~~~~~~a~~~~------~~~~~~~~d~~~~~~~~ 99 (239)
T 3bxo_A 29 DIADLVRSRT--PEASSLLDVACGTGTHLEHFTKEFG-DTAGLELSEDMLTHARKRL------PDATLHQGDMRDFRLGR 99 (239)
T ss_dssp HHHHHHHHHC--TTCCEEEEETCTTSHHHHHHHHHHS-EEEEEESCHHHHHHHHHHC------TTCEEEECCTTTCCCSS
T ss_pred HHHHHHHHhc--CCCCeEEEecccCCHHHHHHHHhCC-cEEEEeCCHHHHHHHHHhC------CCCEEEECCHHHcccCC
Confidence 3344454443 4668999999999999999999877 89999999 8999998764 23899999999887778
Q ss_pred cccEEEEcc-ccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 144 KVDVIISEW-MGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 144 ~~D~Ivse~-~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
+||+|+|.. ..+.+.....+..++..+.++|+|||.+++.
T Consensus 100 ~~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 140 (239)
T 3bxo_A 100 KFSAVVSMFSSVGYLKTTEELGAAVASFAEHLEPGGVVVVE 140 (239)
T ss_dssp CEEEEEECTTGGGGCCSHHHHHHHHHHHHHTEEEEEEEEEC
T ss_pred CCcEEEEcCchHhhcCCHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 999999622 2223333345678899999999999999876
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.8e-13 Score=117.45 Aligned_cols=109 Identities=16% Similarity=0.095 Sum_probs=84.9
Q ss_pred HHHHhcCCCCCCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEccccc-CCCC-C
Q 016351 68 NSIFQNKHHFQGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVED-IVLP-E 143 (391)
Q Consensus 68 ~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~-~~~~-~ 143 (391)
..+...+...++.+|||+|||+|.++..+++. +..+|+++|++ .+++.|+++++.+++.+++ ++++|..+ ++.. +
T Consensus 15 ~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~~~~~~~~~ 93 (178)
T 3hm2_A 15 ALAISALAPKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRI-AVQQGAPRAFDDVPD 93 (178)
T ss_dssp HHHHHHHCCCTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCTTGGGGGCCS
T ss_pred HHHHHHhcccCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecchHhhhhccCC
Confidence 33444444567789999999999999999887 34589999999 8999999999999998678 88888754 3322 7
Q ss_pred cccEEEEccccccccCcchHHHHHHHHhccccCCeEEEccc
Q 016351 144 KVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 144 ~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~ 184 (391)
+||+|++.... .+ ..+++.+.++|+|||.++...
T Consensus 94 ~~D~i~~~~~~---~~----~~~l~~~~~~L~~gG~l~~~~ 127 (178)
T 3hm2_A 94 NPDVIFIGGGL---TA----PGVFAAAWKRLPVGGRLVANA 127 (178)
T ss_dssp CCSEEEECC-T---TC----TTHHHHHHHTCCTTCEEEEEE
T ss_pred CCCEEEECCcc---cH----HHHHHHHHHhcCCCCEEEEEe
Confidence 89999984422 22 457888899999999988543
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.1e-13 Score=124.95 Aligned_cols=110 Identities=18% Similarity=0.148 Sum_probs=87.1
Q ss_pred HHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-
Q 016351 65 AYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP- 142 (391)
Q Consensus 65 ~~~~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~- 142 (391)
.+.+.+...+ .++.+|||||||+|.++..+++.+. +|+|+|++ .+++.|+++. ...+++++++|+.+++++
T Consensus 42 ~~~~~l~~~~--~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~----~~~~~~~~~~d~~~~~~~~ 114 (242)
T 3l8d_A 42 TIIPFFEQYV--KKEAEVLDVGCGDGYGTYKLSRTGY-KAVGVDISEVMIQKGKERG----EGPDLSFIKGDLSSLPFEN 114 (242)
T ss_dssp THHHHHHHHS--CTTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHTTT----CBTTEEEEECBTTBCSSCT
T ss_pred HHHHHHHHHc--CCCCeEEEEcCCCCHHHHHHHHcCC-eEEEEECCHHHHHHHHhhc----ccCCceEEEcchhcCCCCC
Confidence 3344455544 3678999999999999999999977 89999999 8998888764 224599999999998765
Q ss_pred CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEccc
Q 016351 143 EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 143 ~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~ 184 (391)
++||+|++..+.+. ......++..+.++|+|||.+++..
T Consensus 115 ~~fD~v~~~~~l~~---~~~~~~~l~~~~~~L~pgG~l~i~~ 153 (242)
T 3l8d_A 115 EQFEAIMAINSLEW---TEEPLRALNEIKRVLKSDGYACIAI 153 (242)
T ss_dssp TCEEEEEEESCTTS---SSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCccEEEEcChHhh---ccCHHHHHHHHHHHhCCCeEEEEEE
Confidence 89999998443332 2456788999999999999988654
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.47 E-value=2.1e-13 Score=122.87 Aligned_cols=103 Identities=18% Similarity=0.236 Sum_probs=86.7
Q ss_pred CCCCEEEEECCcccHHHHHHHHcC-CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC---CCcccEEEEc
Q 016351 77 FQGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL---PEKVDVIISE 151 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~l~~~~a~~g-~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~---~~~~D~Ivse 151 (391)
.++.+|||||||+|..+..+++.. ..+|+++|++ .+++.|+++++..++.++|+++.+|+.+... .++||+|+++
T Consensus 70 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~~ 149 (232)
T 3ntv_A 70 NNVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVNDKVYDMIFID 149 (232)
T ss_dssp HTCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHTTSCEEEEEEE
T ss_pred cCCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhccCCccEEEEc
Confidence 367899999999999999999853 4589999999 9999999999999998789999999987532 5799999985
Q ss_pred cccccccCcchHHHHHHHHhccccCCeEEEcccc
Q 016351 152 WMGYFLLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 152 ~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~~ 185 (391)
.. ......++..+.++|+|||+++....
T Consensus 150 ~~------~~~~~~~l~~~~~~LkpgG~lv~d~~ 177 (232)
T 3ntv_A 150 AA------KAQSKKFFEIYTPLLKHQGLVITDNV 177 (232)
T ss_dssp TT------SSSHHHHHHHHGGGEEEEEEEEEECT
T ss_pred Cc------HHHHHHHHHHHHHhcCCCeEEEEeeC
Confidence 31 22356789999999999999987543
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=3.6e-13 Score=119.99 Aligned_cols=110 Identities=20% Similarity=0.139 Sum_probs=88.4
Q ss_pred HHHhcCCCCCCCEEEEECCcccHHHHHHHHcC-CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCC-cc
Q 016351 69 SIFQNKHHFQGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPE-KV 145 (391)
Q Consensus 69 ~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g-~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~-~~ 145 (391)
++...+ .++.+|||||||+|.+++.+++.+ +.+|+|+|++ .+++.|+++++.+++.++|+++.+|..+.-.++ +|
T Consensus 8 ~l~~~v--~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~l~~~~~~ 85 (225)
T 3kr9_A 8 LVASFV--SQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAAFEETDQV 85 (225)
T ss_dssp HHHTTS--CTTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCC
T ss_pred HHHHhC--CCCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhhcccCcCC
Confidence 344443 356899999999999999999987 4589999999 899999999999999989999999986532223 69
Q ss_pred cEEEEccccccccCcchHHHHHHHHhccccCCeEEEcccc
Q 016351 146 DVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 146 D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~~ 185 (391)
|+|+...++. ..+..++......|+++|.+|.+..
T Consensus 86 D~IviaG~Gg-----~~i~~Il~~~~~~L~~~~~lVlq~~ 120 (225)
T 3kr9_A 86 SVITIAGMGG-----RLIARILEEGLGKLANVERLILQPN 120 (225)
T ss_dssp CEEEEEEECH-----HHHHHHHHHTGGGCTTCCEEEEEES
T ss_pred CEEEEcCCCh-----HHHHHHHHHHHHHhCCCCEEEEECC
Confidence 9988643322 2356789999999999999886543
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.46 E-value=3.1e-13 Score=119.19 Aligned_cols=119 Identities=19% Similarity=0.289 Sum_probs=89.8
Q ss_pred ChHhHHHHHHHHHhcCCCCCCCEEEEECCcccHH-HHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEccc
Q 016351 59 DRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGIL-AIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSV 136 (391)
Q Consensus 59 d~~r~~~~~~~i~~~~~~~~~~~VLDlGcGtG~l-~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~ 136 (391)
+...+..+.+.+.. ..++.+|||+|||+|.+ ...+++.+. +|+|+|+| .+++.|++++..++. +++++++|+
T Consensus 7 ~~~~~~~~~~~~~~---~~~~~~vLDiGcG~G~~~~~~~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~ 80 (209)
T 2p8j_A 7 RQPQLYRFLKYCNE---SNLDKTVLDCGAGGDLPPLSIFVEDGY-KTYGIEISDLQLKKAENFSRENNF--KLNISKGDI 80 (209)
T ss_dssp SCTHHHHHHHHHHH---SSSCSEEEEESCCSSSCTHHHHHHTTC-EEEEEECCHHHHHHHHHHHHHHTC--CCCEEECCT
T ss_pred hhhhHHHHHHHHhc---cCCCCEEEEECCCCCHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHhcCC--ceEEEECch
Confidence 34444445444443 24568999999999987 445555666 89999999 999999999887663 389999999
Q ss_pred ccCCCC-CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEccc
Q 016351 137 EDIVLP-EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 137 ~~~~~~-~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~ 184 (391)
.+++++ ++||+|++..+.+.+. ......++..+.++|+|||.++...
T Consensus 81 ~~~~~~~~~fD~v~~~~~l~~~~-~~~~~~~l~~~~~~LkpgG~l~~~~ 128 (209)
T 2p8j_A 81 RKLPFKDESMSFVYSYGTIFHMR-KNDVKEAIDEIKRVLKPGGLACINF 128 (209)
T ss_dssp TSCCSCTTCEEEEEECSCGGGSC-HHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hhCCCCCCceeEEEEcChHHhCC-HHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 998765 7899999854333332 2457788999999999999998654
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.6e-13 Score=125.82 Aligned_cols=109 Identities=19% Similarity=0.199 Sum_probs=87.2
Q ss_pred CCCCCCCEEEEECCcccHHHHHHHHcC-CCeEEEEech-HHHHHHHHHHHH---cCCCCcEEEEEcccccCC-------C
Q 016351 74 KHHFQGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEAT-KMSDHARTLVKA---NNLQDVVEVIEGSVEDIV-------L 141 (391)
Q Consensus 74 ~~~~~~~~VLDlGcGtG~l~~~~a~~g-~~~V~avD~s-~~~~~a~~~~~~---~~~~~~v~~i~~d~~~~~-------~ 141 (391)
+...++.+|||+|||+|.+++.+++.. ..+|+|+|++ .+++.|+++++. +++.++++++++|+.++. +
T Consensus 32 ~~~~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~~~ 111 (260)
T 2ozv_A 32 VADDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEAGL 111 (260)
T ss_dssp CCCCSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHTTC
T ss_pred hcccCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhhcc
Confidence 334467899999999999999999885 3489999999 999999999998 899888999999998872 3
Q ss_pred -CCcccEEEEccccccc---------------cCcchHHHHHHHHhccccCCeEEEc
Q 016351 142 -PEKVDVIISEWMGYFL---------------LRESMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 142 -~~~~D~Ivse~~~~~~---------------~~e~~l~~~l~~~~~~L~~gG~ii~ 182 (391)
+++||+|++++..... .....+..++..+.++|+|||.+++
T Consensus 112 ~~~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~ 168 (260)
T 2ozv_A 112 PDEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSL 168 (260)
T ss_dssp CTTCEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEE
T ss_pred CCCCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEE
Confidence 3789999998532211 0112367889999999999999875
|
| >3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=1.8e-13 Score=126.03 Aligned_cols=105 Identities=17% Similarity=0.100 Sum_probs=88.0
Q ss_pred HHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCccc
Q 016351 68 NSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVD 146 (391)
Q Consensus 68 ~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~~D 146 (391)
..+...+ .++.+|||+|||+|.+++.+|+.|+++|+|+|+| .+++.++++++.|++.++|+++++|.+++...+.||
T Consensus 117 ~ri~~~~--~~g~~VlD~~aG~G~~~i~~a~~g~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~~~~~~D 194 (278)
T 3k6r_A 117 VRMAKVA--KPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIAD 194 (278)
T ss_dssp HHHHHHC--CTTCEEEETTCTTTTTTHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEE
T ss_pred HHHHHhc--CCCCEEEEecCcCcHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhccccCCC
Confidence 3444443 4689999999999999999999998899999999 899999999999999999999999999987668999
Q ss_pred EEEEccccccccCcchHHHHHHHHhccccCCeEEE
Q 016351 147 VIISEWMGYFLLRESMFDSVICARDRWLKPTGVMY 181 (391)
Q Consensus 147 ~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii 181 (391)
.|+++++... ..++..+.++|++||++.
T Consensus 195 ~Vi~~~p~~~-------~~~l~~a~~~lk~gG~ih 222 (278)
T 3k6r_A 195 RILMGYVVRT-------HEFIPKALSIAKDGAIIH 222 (278)
T ss_dssp EEEECCCSSG-------GGGHHHHHHHEEEEEEEE
T ss_pred EEEECCCCcH-------HHHHHHHHHHcCCCCEEE
Confidence 9998654322 134556668899999875
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.46 E-value=2.5e-13 Score=122.12 Aligned_cols=110 Identities=15% Similarity=0.206 Sum_probs=90.0
Q ss_pred HHHHhcCCCCCCCEEEEECCcccHHHHHHHHcC-CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCC-c
Q 016351 68 NSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPE-K 144 (391)
Q Consensus 68 ~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g-~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~-~ 144 (391)
+++...+ .++.+|||||||+|.+++.+++.+ +.+|+|+|++ .+++.|+++++.+++.++|+++.+|..+...++ +
T Consensus 13 ~~i~~~v--~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~~~~~~ 90 (244)
T 3gnl_A 13 EKVASYI--TKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIEKKDA 90 (244)
T ss_dssp HHHHTTC--CSSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGC
T ss_pred HHHHHhC--CCCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhccCcccc
Confidence 3455544 356899999999999999999987 4589999999 899999999999999999999999998866554 5
Q ss_pred ccEEEEccccccccCcchHHHHHHHHhccccCCeEEEccc
Q 016351 145 VDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 145 ~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~ 184 (391)
||+|++..++. ..+..++......|++++.+|.+.
T Consensus 91 ~D~IviagmGg-----~lI~~IL~~~~~~L~~~~~lIlq~ 125 (244)
T 3gnl_A 91 IDTIVIAGMGG-----TLIRTILEEGAAKLAGVTKLILQP 125 (244)
T ss_dssp CCEEEEEEECH-----HHHHHHHHHTGGGGTTCCEEEEEE
T ss_pred ccEEEEeCCch-----HHHHHHHHHHHHHhCCCCEEEEEc
Confidence 99998643332 246678888899999999888654
|
| >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.2e-13 Score=118.58 Aligned_cols=113 Identities=15% Similarity=0.122 Sum_probs=87.3
Q ss_pred HhHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHc--CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccc
Q 016351 61 VRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQA--GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVE 137 (391)
Q Consensus 61 ~r~~~~~~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~--g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~ 137 (391)
...+.+...+...+ .+..+|||||||+|.+++.++.. ++ +|+|+|+| .|++.++++++.+|..+++++ .|..
T Consensus 34 p~ld~fY~~~~~~l--~~~~~VLDlGCG~GplAl~l~~~~p~a-~~~A~Di~~~~leiar~~~~~~g~~~~v~~--~d~~ 108 (200)
T 3fzg_A 34 ATLNDFYTYVFGNI--KHVSSILDFGCGFNPLALYQWNENEKI-IYHAYDIDRAEIAFLSSIIGKLKTTIKYRF--LNKE 108 (200)
T ss_dssp GGHHHHHHHHHHHS--CCCSEEEEETCTTHHHHHHHHCSSCCC-EEEEECSCHHHHHHHHHHHHHSCCSSEEEE--ECCH
T ss_pred HhHHHHHHHHHhhc--CCCCeEEEecCCCCHHHHHHHhcCCCC-EEEEEeCCHHHHHHHHHHHHhcCCCccEEE--eccc
Confidence 34556666666665 34689999999999999999877 45 99999999 999999999999999866777 5555
Q ss_pred cCCCCCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEE
Q 016351 138 DIVLPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMY 181 (391)
Q Consensus 138 ~~~~~~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii 181 (391)
....+++||+|++--+-+++ .+ .+..+..+.+.|+|||++|
T Consensus 109 ~~~~~~~~DvVLa~k~LHlL-~~--~~~al~~v~~~L~pggvfI 149 (200)
T 3fzg_A 109 SDVYKGTYDVVFLLKMLPVL-KQ--QDVNILDFLQLFHTQNFVI 149 (200)
T ss_dssp HHHTTSEEEEEEEETCHHHH-HH--TTCCHHHHHHTCEEEEEEE
T ss_pred ccCCCCCcChhhHhhHHHhh-hh--hHHHHHHHHHHhCCCCEEE
Confidence 54556899999985555555 22 2333447788999999888
|
| >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 | Back alignment and structure |
|---|
Probab=99.45 E-value=1.7e-13 Score=130.01 Aligned_cols=105 Identities=17% Similarity=0.125 Sum_probs=87.0
Q ss_pred CCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCC-cEEEEEcccccCCC-----CCcccEEEE
Q 016351 78 QGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQD-VVEVIEGSVEDIVL-----PEKVDVIIS 150 (391)
Q Consensus 78 ~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~-~v~~i~~d~~~~~~-----~~~~D~Ivs 150 (391)
++.+|||+|||+|.+++.+++.|+ +|++||+| .+++.|+++++.+++.+ +++++++|+.++.. .++||+|++
T Consensus 153 ~~~~VLDlgcGtG~~sl~la~~ga-~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~~~~fD~Ii~ 231 (332)
T 2igt_A 153 RPLKVLNLFGYTGVASLVAAAAGA-EVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIILT 231 (332)
T ss_dssp SCCEEEEETCTTCHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEEE
T ss_pred CCCcEEEcccccCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHhcCCCceEEEE
Confidence 567999999999999999999988 89999999 99999999999999976 59999999987532 368999999
Q ss_pred cccccccc-------CcchHHHHHHHHhccccCCeEEEcc
Q 016351 151 EWMGYFLL-------RESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 151 e~~~~~~~-------~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
++..+... ....+..++..+.++|+|||+++..
T Consensus 232 dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~ 271 (332)
T 2igt_A 232 DPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVL 271 (332)
T ss_dssp CCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEE
T ss_pred CCccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEE
Confidence 87533221 1234667888899999999986643
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.45 E-value=7.2e-13 Score=117.10 Aligned_cols=108 Identities=21% Similarity=0.136 Sum_probs=85.9
Q ss_pred HHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-Ccc
Q 016351 68 NSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKV 145 (391)
Q Consensus 68 ~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~-~~~ 145 (391)
..+.+.+...++.+|||||||+|.++..+++.+. +|+++|++ .+++.|+++++.+++.+ ++++.+|..+...+ ++|
T Consensus 67 ~~~~~~l~~~~~~~vLdiG~G~G~~~~~la~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~~~~ 144 (210)
T 3lbf_A 67 ARMTELLELTPQSRVLEIGTGSGYQTAILAHLVQ-HVCSVERIKGLQWQARRRLKNLDLHN-VSTRHGDGWQGWQARAPF 144 (210)
T ss_dssp HHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHSS-EEEEEESCHHHHHHHHHHHHHTTCCS-EEEEESCGGGCCGGGCCE
T ss_pred HHHHHhcCCCCCCEEEEEcCCCCHHHHHHHHhCC-EEEEEecCHHHHHHHHHHHHHcCCCc-eEEEECCcccCCccCCCc
Confidence 3444555566789999999999999999999865 89999999 99999999999998874 99999999885443 789
Q ss_pred cEEEEccccccccCcchHHHHHHHHhccccCCeEEEcccce
Q 016351 146 DVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHAR 186 (391)
Q Consensus 146 D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~~~ 186 (391)
|+|++......+. +.+.++|+|||+++.....
T Consensus 145 D~i~~~~~~~~~~---------~~~~~~L~pgG~lv~~~~~ 176 (210)
T 3lbf_A 145 DAIIVTAAPPEIP---------TALMTQLDEGGILVLPVGE 176 (210)
T ss_dssp EEEEESSBCSSCC---------THHHHTEEEEEEEEEEECS
T ss_pred cEEEEccchhhhh---------HHHHHhcccCcEEEEEEcC
Confidence 9999964322221 2467899999998865443
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.44 E-value=7.4e-13 Score=118.77 Aligned_cols=105 Identities=24% Similarity=0.221 Sum_probs=83.5
Q ss_pred CCCCEEEEECCc-ccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC-CC-CcccEEEEcc
Q 016351 77 FQGKTVLDVGTG-SGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV-LP-EKVDVIISEW 152 (391)
Q Consensus 77 ~~~~~VLDlGcG-tG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~-~~-~~~D~Ivse~ 152 (391)
.++.+|||+||| +|.++..+++.+..+|+|+|++ .+++.|+++++.+++ +++++++|+..+. ++ ++||+|++++
T Consensus 54 ~~~~~vLDlG~G~~G~~~~~la~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~~~~~~~fD~I~~np 131 (230)
T 3evz_A 54 RGGEVALEIGTGHTAMMALMAEKFFNCKVTATEVDEEFFEYARRNIERNNS--NVRLVKSNGGIIKGVVEGTFDVIFSAP 131 (230)
T ss_dssp CSSCEEEEECCTTTCHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHTTC--CCEEEECSSCSSTTTCCSCEEEEEECC
T ss_pred CCCCEEEEcCCCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHhCC--CcEEEeCCchhhhhcccCceeEEEECC
Confidence 467899999999 9999999999833489999999 999999999999998 4999999975442 23 7999999976
Q ss_pred cccccc----------------CcchHHHHHHHHhccccCCeEEEcc
Q 016351 153 MGYFLL----------------RESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 153 ~~~~~~----------------~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
..+... ....+..++..+.++|+|||.++..
T Consensus 132 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 178 (230)
T 3evz_A 132 PYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALY 178 (230)
T ss_dssp CCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred CCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEE
Confidence 422111 1122467899999999999998863
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=5.4e-13 Score=128.81 Aligned_cols=117 Identities=21% Similarity=0.284 Sum_probs=94.2
Q ss_pred HHHHHHHHhcC--CCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC
Q 016351 64 DAYFNSIFQNK--HHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV 140 (391)
Q Consensus 64 ~~~~~~i~~~~--~~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~ 140 (391)
+.+.+.+...+ ...++.+|||+|||+|.++..+++.++ +|+++|+| .+++.|+++++.+++. ++++.+|+.+..
T Consensus 217 ~~ll~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~la~~g~-~V~gvDis~~al~~A~~n~~~~~~~--v~~~~~D~~~~~ 293 (381)
T 3dmg_A 217 LLLLEALQERLGPEGVRGRQVLDLGAGYGALTLPLARMGA-EVVGVEDDLASVLSLQKGLEANALK--AQALHSDVDEAL 293 (381)
T ss_dssp HHHHHHHHHHHCTTTTTTCEEEEETCTTSTTHHHHHHTTC-EEEEEESBHHHHHHHHHHHHHTTCC--CEEEECSTTTTS
T ss_pred HHHHHHHHHhhcccCCCCCEEEEEeeeCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHcCCC--eEEEEcchhhcc
Confidence 44445554433 234678999999999999999999977 89999999 9999999999999876 899999999976
Q ss_pred CC-CcccEEEEcccccccc--CcchHHHHHHHHhccccCCeEEEcc
Q 016351 141 LP-EKVDVIISEWMGYFLL--RESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 141 ~~-~~~D~Ivse~~~~~~~--~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
.+ ++||+|++++..+... .......++..+.++|+|||.+++.
T Consensus 294 ~~~~~fD~Ii~npp~~~~~~~~~~~~~~~l~~~~~~LkpGG~l~iv 339 (381)
T 3dmg_A 294 TEEARFDIIVTNPPFHVGGAVILDVAQAFVNVAAARLRPGGVFFLV 339 (381)
T ss_dssp CTTCCEEEEEECCCCCTTCSSCCHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ccCCCeEEEEECCchhhcccccHHHHHHHHHHHHHhcCcCcEEEEE
Confidence 65 7999999976533311 1235678899999999999999865
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.44 E-value=5.6e-13 Score=122.02 Aligned_cols=108 Identities=20% Similarity=0.298 Sum_probs=83.7
Q ss_pred HHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-
Q 016351 65 AYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP- 142 (391)
Q Consensus 65 ~~~~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~- 142 (391)
...+.+...+. ++.+|||||||+|.++..+++.+. +|+|+|+| .+++.|+++.. . .++.+|+.+++++
T Consensus 43 ~~~~~l~~~~~--~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~~a~~~~~-----~--~~~~~d~~~~~~~~ 112 (260)
T 2avn_A 43 LIGSFLEEYLK--NPCRVLDLGGGTGKWSLFLQERGF-EVVLVDPSKEMLEVAREKGV-----K--NVVEAKAEDLPFPS 112 (260)
T ss_dssp HHHHHHHHHCC--SCCEEEEETCTTCHHHHHHHTTTC-EEEEEESCHHHHHHHHHHTC-----S--CEEECCTTSCCSCT
T ss_pred HHHHHHHHhcC--CCCeEEEeCCCcCHHHHHHHHcCC-eEEEEeCCHHHHHHHHhhcC-----C--CEEECcHHHCCCCC
Confidence 33445555443 678999999999999999998876 79999999 89999987653 1 2888999988765
Q ss_pred CcccEEEEcc-ccccccCcchHHHHHHHHhccccCCeEEEcccc
Q 016351 143 EKVDVIISEW-MGYFLLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 143 ~~~D~Ivse~-~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~~ 185 (391)
++||+|++.. +.+.. ..+..++.++.++|+|||.+++...
T Consensus 113 ~~fD~v~~~~~~~~~~---~~~~~~l~~~~~~LkpgG~l~~~~~ 153 (260)
T 2avn_A 113 GAFEAVLALGDVLSYV---ENKDKAFSEIRRVLVPDGLLIATVD 153 (260)
T ss_dssp TCEEEEEECSSHHHHC---SCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCEEEEEEcchhhhcc---ccHHHHHHHHHHHcCCCeEEEEEeC
Confidence 7899999843 22221 2367889999999999999986543
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=8.3e-13 Score=114.36 Aligned_cols=109 Identities=20% Similarity=0.300 Sum_probs=88.5
Q ss_pred HHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEccccc-CCCCCcc
Q 016351 68 NSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVED-IVLPEKV 145 (391)
Q Consensus 68 ~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~-~~~~~~~ 145 (391)
..+...+...++.+|||+|||+|.++..+++.+ .+|+++|++ .+++.|+++++.+++.++++++++|+.+ +...++|
T Consensus 23 ~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~-~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 101 (192)
T 1l3i_A 23 CLIMCLAEPGKNDVAVDVGCGTGGVTLELAGRV-RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKIPDI 101 (192)
T ss_dssp HHHHHHHCCCTTCEEEEESCTTSHHHHHHHTTS-SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTSCCE
T ss_pred HHHHHhcCCCCCCEEEEECCCCCHHHHHHHHhc-CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHHhcccCCCC
Confidence 334444445677899999999999999999988 589999999 9999999999999986679999999887 2222589
Q ss_pred cEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 146 DVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 146 D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
|+|++.... ..+..++..+.++|+|||.++..
T Consensus 102 D~v~~~~~~------~~~~~~l~~~~~~l~~gG~l~~~ 133 (192)
T 1l3i_A 102 DIAVVGGSG------GELQEILRIIKDKLKPGGRIIVT 133 (192)
T ss_dssp EEEEESCCT------TCHHHHHHHHHHTEEEEEEEEEE
T ss_pred CEEEECCch------HHHHHHHHHHHHhcCCCcEEEEE
Confidence 999985431 13577899999999999998864
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=2.3e-13 Score=121.50 Aligned_cols=104 Identities=26% Similarity=0.297 Sum_probs=85.8
Q ss_pred CCCCEEEEECCcccHHHHHHHHcC--CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC------CCcccE
Q 016351 77 FQGKTVLDVGTGSGILAIWSAQAG--ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL------PEKVDV 147 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~l~~~~a~~g--~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~------~~~~D~ 147 (391)
.++.+|||||||+|..+..+++.. ..+|+++|++ .+++.|+++++..++.++++++++|+.+... .++||+
T Consensus 57 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~ 136 (223)
T 3duw_A 57 QGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPFDF 136 (223)
T ss_dssp HTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCCSE
T ss_pred hCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCcCE
Confidence 356899999999999999999872 3489999999 8999999999999998889999999976421 157999
Q ss_pred EEEccccccccCcchHHHHHHHHhccccCCeEEEcccce
Q 016351 148 IISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHAR 186 (391)
Q Consensus 148 Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~~~ 186 (391)
|+++.. ......++..+.++|+|||+++.....
T Consensus 137 v~~d~~------~~~~~~~l~~~~~~L~pgG~lv~~~~~ 169 (223)
T 3duw_A 137 IFIDAD------KQNNPAYFEWALKLSRPGTVIIGDNVV 169 (223)
T ss_dssp EEECSC------GGGHHHHHHHHHHTCCTTCEEEEESCS
T ss_pred EEEcCC------cHHHHHHHHHHHHhcCCCcEEEEeCCC
Confidence 998643 124567889999999999988876443
|
| >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.44 E-value=1.4e-13 Score=117.31 Aligned_cols=100 Identities=18% Similarity=0.143 Sum_probs=80.2
Q ss_pred CCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC--C---CCcccEEEEc
Q 016351 78 QGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV--L---PEKVDVIISE 151 (391)
Q Consensus 78 ~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~--~---~~~~D~Ivse 151 (391)
++.+|||+|||+|.++..+++.+.. |+|+|++ .+++.|+++++.+++ +++++++|+.+.. . .++||+|+++
T Consensus 41 ~~~~vLD~GcG~G~~~~~l~~~~~~-v~~vD~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~D~i~~~ 117 (171)
T 1ws6_A 41 RRGRFLDPFAGSGAVGLEAASEGWE-AVLVEKDPEAVRLLKENVRRTGL--GARVVALPVEVFLPEAKAQGERFTVAFMA 117 (171)
T ss_dssp TCCEEEEETCSSCHHHHHHHHTTCE-EEEECCCHHHHHHHHHHHHHHTC--CCEEECSCHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCCeEEEeCCCcCHHHHHHHHCCCe-EEEEeCCHHHHHHHHHHHHHcCC--ceEEEeccHHHHHHhhhccCCceEEEEEC
Confidence 5689999999999999999999884 9999999 999999999999887 4999999998742 1 1379999997
Q ss_pred cccccccCcchHHHHHHHHh--ccccCCeEEEcccc
Q 016351 152 WMGYFLLRESMFDSVICARD--RWLKPTGVMYPSHA 185 (391)
Q Consensus 152 ~~~~~~~~e~~l~~~l~~~~--~~L~~gG~ii~~~~ 185 (391)
+..+ . ....++..+. ++|+|||.+++...
T Consensus 118 ~~~~-~----~~~~~~~~~~~~~~L~~gG~~~~~~~ 148 (171)
T 1ws6_A 118 PPYA-M----DLAALFGELLASGLVEAGGLYVLQHP 148 (171)
T ss_dssp CCTT-S----CTTHHHHHHHHHTCEEEEEEEEEEEE
T ss_pred CCCc-h----hHHHHHHHHHhhcccCCCcEEEEEeC
Confidence 6422 2 2334455555 99999999886533
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=4.6e-13 Score=128.20 Aligned_cols=113 Identities=18% Similarity=0.191 Sum_probs=87.6
Q ss_pred HHHhcCCCCCCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHH-------HHcCCC-CcEEEEEccccc
Q 016351 69 SIFQNKHHFQGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLV-------KANNLQ-DVVEVIEGSVED 138 (391)
Q Consensus 69 ~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~-------~~~~~~-~~v~~i~~d~~~ 138 (391)
.+...+...++.+|||||||+|.+++.+|+. ++.+|+|||++ .+++.|++++ +.+|+. ++|+|+++|+.+
T Consensus 164 ~il~~l~l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~GD~~~ 243 (438)
T 3uwp_A 164 QMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLS 243 (438)
T ss_dssp HHHHHHCCCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEECCTTS
T ss_pred HHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEECcccC
Confidence 3444455668899999999999999988864 77679999999 8999998754 445663 579999999998
Q ss_pred CCCC---CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcccc
Q 016351 139 IVLP---EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 139 ~~~~---~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~~ 185 (391)
++++ ..+|+|+++.+. .. ..+...+.++.+.|||||+||....
T Consensus 244 lp~~d~~~~aDVVf~Nn~~---F~-pdl~~aL~Ei~RvLKPGGrIVssE~ 289 (438)
T 3uwp_A 244 EEWRERIANTSVIFVNNFA---FG-PEVDHQLKERFANMKEGGRIVSSKP 289 (438)
T ss_dssp HHHHHHHHTCSEEEECCTT---CC-HHHHHHHHHHHTTSCTTCEEEESSC
T ss_pred CccccccCCccEEEEcccc---cC-chHHHHHHHHHHcCCCCcEEEEeec
Confidence 7653 479999986532 22 3566677888999999999986533
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=99.44 E-value=3.3e-13 Score=126.43 Aligned_cols=106 Identities=11% Similarity=0.100 Sum_probs=78.9
Q ss_pred CCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCC-----cEEEEEccc------ccCC--CC-
Q 016351 78 QGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQD-----VVEVIEGSV------EDIV--LP- 142 (391)
Q Consensus 78 ~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~-----~v~~i~~d~------~~~~--~~- 142 (391)
++.+|||||||+|..+..+++.+..+|+|+|+| .|++.|+++....+... .+++.+.|+ .++. ++
T Consensus 48 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~~ 127 (302)
T 2vdw_A 48 NKRKVLAIDFGNGADLEKYFYGEIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFYF 127 (302)
T ss_dssp SCCEEEETTCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTCCS
T ss_pred CCCeEEEEecCCcHhHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhccccC
Confidence 468999999999976655666655589999999 99999999887765431 267888887 3331 23
Q ss_pred CcccEEEEccc-cccccCcchHHHHHHHHhccccCCeEEEccc
Q 016351 143 EKVDVIISEWM-GYFLLRESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 143 ~~~D~Ivse~~-~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~ 184 (391)
++||+|+|..+ .+....+ ....+++++.++|||||+++...
T Consensus 128 ~~FD~V~~~~~lhy~~~~~-~~~~~l~~~~r~LkpGG~~i~~~ 169 (302)
T 2vdw_A 128 GKFNIIDWQFAIHYSFHPR-HYATVMNNLSELTASGGKVLITT 169 (302)
T ss_dssp SCEEEEEEESCGGGTCSTT-THHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCeeEEEECchHHHhCCHH-HHHHHHHHHHHHcCCCCEEEEEe
Confidence 79999998543 3333333 45789999999999999998653
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.43 E-value=6.5e-13 Score=128.06 Aligned_cols=115 Identities=17% Similarity=0.170 Sum_probs=90.4
Q ss_pred HHHhcCCCCCCCEEEEECCcccHHHHHHHHcC-CCeEEEEech-HHHHHHHHHHHHcCCCC--cEEEEEcccccCCCCCc
Q 016351 69 SIFQNKHHFQGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEAT-KMSDHARTLVKANNLQD--VVEVIEGSVEDIVLPEK 144 (391)
Q Consensus 69 ~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g-~~~V~avD~s-~~~~~a~~~~~~~~~~~--~v~~i~~d~~~~~~~~~ 144 (391)
.+...+...++.+|||+|||+|.+++.+++.+ ..+|+++|+| .+++.|+++++.+++.+ +++++.+|+.+...+++
T Consensus 213 ~ll~~l~~~~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~~~~~~~ 292 (375)
T 4dcm_A 213 FFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVEPFR 292 (375)
T ss_dssp HHHHTCCCSCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTTTCCTTC
T ss_pred HHHHhCcccCCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhccCCCCC
Confidence 45555655566899999999999999999985 4589999999 89999999999998764 48889999988543479
Q ss_pred ccEEEEccccccc--cCcchHHHHHHHHhccccCCeEEEcc
Q 016351 145 VDVIISEWMGYFL--LRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 145 ~D~Ivse~~~~~~--~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
||+|+|++..+.. ........++..+.++|+|||++++.
T Consensus 293 fD~Ii~nppfh~~~~~~~~~~~~~l~~~~~~LkpgG~l~iv 333 (375)
T 4dcm_A 293 FNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIV 333 (375)
T ss_dssp EEEEEECCCC-------CCHHHHHHHHHHHHEEEEEEEEEE
T ss_pred eeEEEECCCcccCcccCHHHHHHHHHHHHHhCCCCcEEEEE
Confidence 9999998653321 11223456899999999999998863
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A | Back alignment and structure |
|---|
Probab=99.43 E-value=5.5e-13 Score=117.08 Aligned_cols=99 Identities=23% Similarity=0.299 Sum_probs=84.1
Q ss_pred CCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-CcccEEEEccccc
Q 016351 78 QGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIISEWMGY 155 (391)
Q Consensus 78 ~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~-~~~D~Ivse~~~~ 155 (391)
++ +|||||||+|.++..+++.+. +|+++|++ .+++.|+++...++. +++++++|+.+++++ ++||+|++.. .+
T Consensus 30 ~~-~vLdiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~fD~v~~~~-~~ 104 (202)
T 2kw5_A 30 QG-KILCLAEGEGRNACFLASLGY-EVTAVDQSSVGLAKAKQLAQEKGV--KITTVQSNLADFDIVADAWEGIVSIF-CH 104 (202)
T ss_dssp SS-EEEECCCSCTHHHHHHHTTTC-EEEEECSSHHHHHHHHHHHHHHTC--CEEEECCBTTTBSCCTTTCSEEEEEC-CC
T ss_pred CC-CEEEECCCCCHhHHHHHhCCC-eEEEEECCHHHHHHHHHHHHhcCC--ceEEEEcChhhcCCCcCCccEEEEEh-hc
Confidence 45 999999999999999999877 89999999 999999999988776 399999999998765 7899999842 22
Q ss_pred cccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 156 FLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 156 ~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
........++..+.++|+|||.++..
T Consensus 105 --~~~~~~~~~l~~~~~~L~pgG~l~~~ 130 (202)
T 2kw5_A 105 --LPSSLRQQLYPKVYQGLKPGGVFILE 130 (202)
T ss_dssp --CCHHHHHHHHHHHHTTCCSSEEEEEE
T ss_pred --CCHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 13345778899999999999999865
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... | Back alignment and structure |
|---|
Probab=99.43 E-value=2.6e-13 Score=121.19 Aligned_cols=106 Identities=16% Similarity=0.250 Sum_probs=83.4
Q ss_pred CCCCEEEEECCcccHHHHHHHHc-C-CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccC-C-CC-----Cccc
Q 016351 77 FQGKTVLDVGTGSGILAIWSAQA-G-ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDI-V-LP-----EKVD 146 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~l~~~~a~~-g-~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~-~-~~-----~~~D 146 (391)
.++.+|||||||+|..++.+++. + ..+|+++|++ .+++.|+++++.+++.++|+++++|+.+. + ++ ++||
T Consensus 57 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~fD 136 (221)
T 3u81_A 57 YSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLD 136 (221)
T ss_dssp HCCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCCCS
T ss_pred cCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCceE
Confidence 35689999999999999999985 2 3489999999 99999999999999988899999998663 1 22 5899
Q ss_pred EEEEccccccccCcchHHHHHHHHhccccCCeEEEcccce
Q 016351 147 VIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHAR 186 (391)
Q Consensus 147 ~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~~~ 186 (391)
+|+++...... .....++..+ ++|+|||+++.....
T Consensus 137 ~V~~d~~~~~~---~~~~~~~~~~-~~LkpgG~lv~~~~~ 172 (221)
T 3u81_A 137 MVFLDHWKDRY---LPDTLLLEKC-GLLRKGTVLLADNVI 172 (221)
T ss_dssp EEEECSCGGGH---HHHHHHHHHT-TCCCTTCEEEESCCC
T ss_pred EEEEcCCcccc---hHHHHHHHhc-cccCCCeEEEEeCCC
Confidence 99986532221 1223456666 999999999977554
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.43 E-value=3.5e-13 Score=122.67 Aligned_cols=103 Identities=20% Similarity=0.272 Sum_probs=85.6
Q ss_pred CCCCEEEEECCcccHHHHHHHHc-C-CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccC-C-CC--CcccEEE
Q 016351 77 FQGKTVLDVGTGSGILAIWSAQA-G-ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDI-V-LP--EKVDVII 149 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~l~~~~a~~-g-~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~-~-~~--~~~D~Iv 149 (391)
.++.+|||||||+|..+..+++. + ..+|+++|++ .+++.|+++++.+++.++|+++.+|+.+. + +. ++||+|+
T Consensus 62 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~~~~fD~V~ 141 (248)
T 3tfw_A 62 TQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGECPAFDLIF 141 (248)
T ss_dssp HTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCSCCCCSEEE
T ss_pred cCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCCCCCeEEEE
Confidence 35689999999999999999987 2 4589999999 99999999999999988899999998773 2 22 4899999
Q ss_pred EccccccccCcchHHHHHHHHhccccCCeEEEcccc
Q 016351 150 SEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 150 se~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~~ 185 (391)
++.. ......++..+.++|+|||+++....
T Consensus 142 ~d~~------~~~~~~~l~~~~~~LkpGG~lv~~~~ 171 (248)
T 3tfw_A 142 IDAD------KPNNPHYLRWALRYSRPGTLIIGDNV 171 (248)
T ss_dssp ECSC------GGGHHHHHHHHHHTCCTTCEEEEECC
T ss_pred ECCc------hHHHHHHHHHHHHhcCCCeEEEEeCC
Confidence 8541 22456789999999999999987544
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.43 E-value=1.1e-13 Score=126.95 Aligned_cols=107 Identities=27% Similarity=0.351 Sum_probs=85.2
Q ss_pred HHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-
Q 016351 65 AYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP- 142 (391)
Q Consensus 65 ~~~~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~- 142 (391)
.+.+.+...+...++.+|||||||+|.++..+++.+. +|+|+|+| .|++.|+++. +++++++|+.+++++
T Consensus 21 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~-------~~~~~~~d~~~~~~~~ 92 (261)
T 3ege_A 21 RIVNAIINLLNLPKGSVIADIGAGTGGYSVALANQGL-FVYAVEPSIVMRQQAVVHP-------QVEWFTGYAENLALPD 92 (261)
T ss_dssp HHHHHHHHHHCCCTTCEEEEETCTTSHHHHHHHTTTC-EEEEECSCHHHHHSSCCCT-------TEEEECCCTTSCCSCT
T ss_pred HHHHHHHHHhCCCCCCEEEEEcCcccHHHHHHHhCCC-EEEEEeCCHHHHHHHHhcc-------CCEEEECchhhCCCCC
Confidence 4555566655556789999999999999999998776 89999999 8888776543 399999999998776
Q ss_pred CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 143 EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 143 ~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
++||+|++..+.+.+ .+...++.++.++|| ||.++..
T Consensus 93 ~~fD~v~~~~~l~~~---~~~~~~l~~~~~~Lk-gG~~~~~ 129 (261)
T 3ege_A 93 KSVDGVISILAIHHF---SHLEKSFQEMQRIIR-DGTIVLL 129 (261)
T ss_dssp TCBSEEEEESCGGGC---SSHHHHHHHHHHHBC-SSCEEEE
T ss_pred CCEeEEEEcchHhhc---cCHHHHHHHHHHHhC-CcEEEEE
Confidence 899999995543333 457889999999999 9966543
|
| >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 | Back alignment and structure |
|---|
Probab=99.43 E-value=8.4e-13 Score=117.11 Aligned_cols=100 Identities=21% Similarity=0.214 Sum_probs=77.6
Q ss_pred CCCCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccC----CCCCcccEEE
Q 016351 76 HFQGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDI----VLPEKVDVII 149 (391)
Q Consensus 76 ~~~~~~VLDlGcGtG~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~----~~~~~~D~Iv 149 (391)
..++.+|||||||+|.++..+++. +..+|+|+|+| .|++.+.+.++.. +++.++.+|+.+. .++++||+|+
T Consensus 55 ~~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~---~~v~~~~~d~~~~~~~~~~~~~fD~V~ 131 (210)
T 1nt2_A 55 LRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRER---NNIIPLLFDASKPWKYSGIVEKVDLIY 131 (210)
T ss_dssp CCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHC---SSEEEECSCTTCGGGTTTTCCCEEEEE
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcC---CCeEEEEcCCCCchhhcccccceeEEE
Confidence 456789999999999999988886 33589999999 8887776666553 2489999998774 3347899999
Q ss_pred EccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 150 SEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 150 se~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
++.. .......++.++.++|||||.++..
T Consensus 132 ~~~~-----~~~~~~~~l~~~~r~LkpgG~l~i~ 160 (210)
T 1nt2_A 132 QDIA-----QKNQIEILKANAEFFLKEKGEVVIM 160 (210)
T ss_dssp ECCC-----STTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred Eecc-----ChhHHHHHHHHHHHHhCCCCEEEEE
Confidence 9731 1223445688999999999999866
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=4.6e-14 Score=127.66 Aligned_cols=103 Identities=19% Similarity=0.063 Sum_probs=85.6
Q ss_pred CCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEcccccc
Q 016351 78 QGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMGYF 156 (391)
Q Consensus 78 ~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~~D~Ivse~~~~~ 156 (391)
++.+|||+|||+|.++..+++.|. +|+|+|+| .+++.|+++++.+++.++++++++|+.++...++||+|++++..+.
T Consensus 78 ~~~~vLD~gcG~G~~~~~la~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~~ 156 (241)
T 3gdh_A 78 KCDVVVDAFCGVGGNTIQFALTGM-RVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLASFLKADVVFLSPPWGG 156 (241)
T ss_dssp CCSEEEETTCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHGGGCCCSEEEECCCCSS
T ss_pred CCCEEEECccccCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhcccCCCCEEEECCCcCC
Confidence 678999999999999999999984 89999999 9999999999999986679999999999875589999999765433
Q ss_pred ccCcchHHHHHHHHhccccCCeEEEccc
Q 016351 157 LLRESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 157 ~~~e~~l~~~l~~~~~~L~~gG~ii~~~ 184 (391)
... ....+..+.++|+|||.++...
T Consensus 157 ~~~---~~~~~~~~~~~L~pgG~~i~~~ 181 (241)
T 3gdh_A 157 PDY---ATAETFDIRTMMSPDGFEIFRL 181 (241)
T ss_dssp GGG---GGSSSBCTTTSCSSCHHHHHHH
T ss_pred cch---hhhHHHHHHhhcCCcceeHHHH
Confidence 322 2224556789999999876543
|
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=5.4e-14 Score=128.75 Aligned_cols=110 Identities=15% Similarity=0.187 Sum_probs=85.1
Q ss_pred CCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCC----------------------------
Q 016351 75 HHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNL---------------------------- 125 (391)
Q Consensus 75 ~~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~---------------------------- 125 (391)
...++.+|||||||+|.++..+++.+..+|+|+|+| .+++.|++++..++.
T Consensus 53 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 132 (265)
T 2i62_A 53 GAVKGELLIDIGSGPTIYQLLSACESFTEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKL 132 (265)
T ss_dssp SSCCEEEEEEESCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHH
T ss_pred cccCCCEEEEECCCccHHHHHHhhcccCeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHh
Confidence 345678999999999999999988877689999999 999999988765431
Q ss_pred CCcE-EEEEcccccCCC--C---CcccEEEEccccc-cccCcchHHHHHHHHhccccCCeEEEccc
Q 016351 126 QDVV-EVIEGSVEDIVL--P---EKVDVIISEWMGY-FLLRESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 126 ~~~v-~~i~~d~~~~~~--~---~~~D~Ivse~~~~-~~~~e~~l~~~l~~~~~~L~~gG~ii~~~ 184 (391)
..++ +++++|+.+... + ++||+|++..+.+ ...+...+..++..+.++|+|||.++...
T Consensus 133 ~~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~ 198 (265)
T 2i62_A 133 RRAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVD 198 (265)
T ss_dssp HHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred hhhheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEe
Confidence 1127 999999988643 3 6899999854333 22233457788999999999999998654
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=1.6e-12 Score=120.09 Aligned_cols=120 Identities=15% Similarity=0.126 Sum_probs=92.8
Q ss_pred hHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccC
Q 016351 62 RMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDI 139 (391)
Q Consensus 62 r~~~~~~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~ 139 (391)
..+.+.+.+...+. .++.+|||+|||+|.++..+++. +..+|+|+|+| .+++.|+++++.+++. +++++++|+.+.
T Consensus 94 ~te~l~~~~l~~~~-~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~-~v~~~~~d~~~~ 171 (276)
T 2b3t_A 94 DTECLVEQALARLP-EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIK-NIHILQSDWFSA 171 (276)
T ss_dssp THHHHHHHHHHHSC-SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCC-SEEEECCSTTGG
T ss_pred hHHHHHHHHHHhcc-cCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC-ceEEEEcchhhh
Confidence 35555566655554 45689999999999999999875 44589999999 9999999999999886 499999999875
Q ss_pred CCCCcccEEEEccccccc----------cCc------------chHHHHHHHHhccccCCeEEEcc
Q 016351 140 VLPEKVDVIISEWMGYFL----------LRE------------SMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 140 ~~~~~~D~Ivse~~~~~~----------~~e------------~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
..+++||+|++++..... .++ .....++..+.++|+|||.++..
T Consensus 172 ~~~~~fD~Iv~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~ 237 (276)
T 2b3t_A 172 LAGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLE 237 (276)
T ss_dssp GTTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred cccCCccEEEECCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 335789999997532111 011 23567889999999999999875
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=5.9e-13 Score=121.63 Aligned_cols=108 Identities=24% Similarity=0.346 Sum_probs=88.5
Q ss_pred HHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCC
Q 016351 65 AYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPE 143 (391)
Q Consensus 65 ~~~~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~ 143 (391)
...+.+...+ .++.+|||+|||+|.+++.+++.|+ +|+|+|++ .+++.|+++++.+++. ++++++|+.+....+
T Consensus 109 ~~~~~l~~~~--~~~~~VLDiGcG~G~l~~~la~~g~-~v~gvDi~~~~v~~a~~n~~~~~~~--v~~~~~d~~~~~~~~ 183 (254)
T 2nxc_A 109 LALKALARHL--RPGDKVLDLGTGSGVLAIAAEKLGG-KALGVDIDPMVLPQAEANAKRNGVR--PRFLEGSLEAALPFG 183 (254)
T ss_dssp HHHHHHHHHC--CTTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCGGGHHHHHHHHHHTTCC--CEEEESCHHHHGGGC
T ss_pred HHHHHHHHhc--CCCCEEEEecCCCcHHHHHHHHhCC-eEEEEECCHHHHHHHHHHHHHcCCc--EEEEECChhhcCcCC
Confidence 3444555442 4678999999999999999999988 89999999 8999999999999886 899999988742237
Q ss_pred cccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 144 KVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 144 ~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
+||+|+++.+.. .+..++..+.++|+|||.++..
T Consensus 184 ~fD~Vv~n~~~~------~~~~~l~~~~~~LkpgG~lils 217 (254)
T 2nxc_A 184 PFDLLVANLYAE------LHAALAPRYREALVPGGRALLT 217 (254)
T ss_dssp CEEEEEEECCHH------HHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCCEEEECCcHH------HHHHHHHHHHHHcCCCCEEEEE
Confidence 899999865322 3567889999999999999864
|
| >2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=5.6e-13 Score=129.10 Aligned_cols=109 Identities=19% Similarity=0.157 Sum_probs=87.9
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCC-cEEEEEcccccCCC-----CCcccEEE
Q 016351 77 FQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQD-VVEVIEGSVEDIVL-----PEKVDVII 149 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~-~v~~i~~d~~~~~~-----~~~~D~Iv 149 (391)
.++.+|||+|||+|.+++.+|+.|+++|+++|+| .+++.|+++++.|++.+ +++++++|+.++.. .++||+|+
T Consensus 211 ~~~~~VLDl~cGtG~~sl~la~~ga~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~~~~~fD~Ii 290 (385)
T 2b78_A 211 AAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDIII 290 (385)
T ss_dssp TBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred cCCCeEEEEeeccCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHHhCCCccEEE
Confidence 4678999999999999999999888899999999 99999999999999975 69999999977421 25899999
Q ss_pred Ecccccc---ccCc---chHHHHHHHHhccccCCeEEEcccc
Q 016351 150 SEWMGYF---LLRE---SMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 150 se~~~~~---~~~e---~~l~~~l~~~~~~L~~gG~ii~~~~ 185 (391)
+++.... .... ..+..++..+.++|+|||+++.+..
T Consensus 291 ~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~ 332 (385)
T 2b78_A 291 IDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTN 332 (385)
T ss_dssp ECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred ECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 9875421 1111 2345577788899999999987644
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=99.42 E-value=4e-13 Score=119.66 Aligned_cols=105 Identities=23% Similarity=0.252 Sum_probs=81.7
Q ss_pred HHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccC---CC--C
Q 016351 69 SIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDI---VL--P 142 (391)
Q Consensus 69 ~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~---~~--~ 142 (391)
.+...+...++.+|||||||+|.++..+++.+. +|+|+|++ .+++.|+++ ..++++..|+.++ .. .
T Consensus 43 ~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~~~~~~~ 114 (227)
T 3e8s_A 43 AILLAILGRQPERVLDLGCGEGWLLRALADRGI-EAVGVDGDRTLVDAARAA-------GAGEVHLASYAQLAEAKVPVG 114 (227)
T ss_dssp HHHHHHHHTCCSEEEEETCTTCHHHHHHHTTTC-EEEEEESCHHHHHHHHHT-------CSSCEEECCHHHHHTTCSCCC
T ss_pred HHHHHhhcCCCCEEEEeCCCCCHHHHHHHHCCC-EEEEEcCCHHHHHHHHHh-------cccccchhhHHhhcccccccC
Confidence 343333344668999999999999999999877 89999999 899988876 2378888888877 22 2
Q ss_pred CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcccc
Q 016351 143 EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 143 ~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~~ 185 (391)
++||+|++..+.+ ...+..++..+.++|+|||.+++...
T Consensus 115 ~~fD~v~~~~~l~----~~~~~~~l~~~~~~L~pgG~l~~~~~ 153 (227)
T 3e8s_A 115 KDYDLICANFALL----HQDIIELLSAMRTLLVPGGALVIQTL 153 (227)
T ss_dssp CCEEEEEEESCCC----SSCCHHHHHHHHHTEEEEEEEEEEEC
T ss_pred CCccEEEECchhh----hhhHHHHHHHHHHHhCCCeEEEEEec
Confidence 5699999854333 23567889999999999999986543
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.42 E-value=3.1e-13 Score=122.12 Aligned_cols=96 Identities=16% Similarity=0.186 Sum_probs=78.5
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccC--CCC-CcccEEEEcc
Q 016351 77 FQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDI--VLP-EKVDVIISEW 152 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~--~~~-~~~D~Ivse~ 152 (391)
.++.+|||||||+|.++..+++.+. +|+|+|+| .+++.|+++ ++++.+|+.++ +++ ++||+|+|..
T Consensus 40 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~---------~~~~~~d~~~~~~~~~~~~fD~i~~~~ 109 (240)
T 3dli_A 40 KGCRRVLDIGCGRGEFLELCKEEGI-ESIGVDINEDMIKFCEGK---------FNVVKSDAIEYLKSLPDKYLDGVMISH 109 (240)
T ss_dssp TTCSCEEEETCTTTHHHHHHHHHTC-CEEEECSCHHHHHHHHTT---------SEEECSCHHHHHHTSCTTCBSEEEEES
T ss_pred cCCCeEEEEeCCCCHHHHHHHhCCC-cEEEEECCHHHHHHHHhh---------cceeeccHHHHhhhcCCCCeeEEEECC
Confidence 3568999999999999999999887 69999999 888888764 78899998885 444 8999999955
Q ss_pred ccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 153 MGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 153 ~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
+.+.+. ...+..++..+.++|||||.+++.
T Consensus 110 ~l~~~~-~~~~~~~l~~~~~~LkpgG~l~~~ 139 (240)
T 3dli_A 110 FVEHLD-PERLFELLSLCYSKMKYSSYIVIE 139 (240)
T ss_dssp CGGGSC-GGGHHHHHHHHHHHBCTTCCEEEE
T ss_pred chhhCC-cHHHHHHHHHHHHHcCCCcEEEEE
Confidence 444433 225678999999999999998864
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=99.42 E-value=7.9e-13 Score=120.54 Aligned_cols=107 Identities=22% Similarity=0.288 Sum_probs=89.4
Q ss_pred HHHhcCCCCCCCEEEEECCcccHHHHHHHHc-C-CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcc
Q 016351 69 SIFQNKHHFQGKTVLDVGTGSGILAIWSAQA-G-ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKV 145 (391)
Q Consensus 69 ~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~-g-~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~~ 145 (391)
.+...+...++.+|||+|||+|.++..+++. + ..+|+++|++ .+++.|+++++.+++.++++++++|+.+....++|
T Consensus 84 ~i~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 163 (255)
T 3mb5_A 84 LIVAYAGISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEGIEEENV 163 (255)
T ss_dssp HHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGCCCCCSE
T ss_pred HHHHhhCCCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhccCCCCc
Confidence 4555556677899999999999999999988 4 4589999999 99999999999999988899999999976444789
Q ss_pred cEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 146 DVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 146 D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
|+|++++. ....++..+.++|+|||.++..
T Consensus 164 D~v~~~~~--------~~~~~l~~~~~~L~~gG~l~~~ 193 (255)
T 3mb5_A 164 DHVILDLP--------QPERVVEHAAKALKPGGFFVAY 193 (255)
T ss_dssp EEEEECSS--------CGGGGHHHHHHHEEEEEEEEEE
T ss_pred CEEEECCC--------CHHHHHHHHHHHcCCCCEEEEE
Confidence 99998542 2235688888999999998864
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.42 E-value=2.9e-13 Score=121.02 Aligned_cols=103 Identities=20% Similarity=0.206 Sum_probs=85.7
Q ss_pred CCCCEEEEECCcccHHHHHHHHc-C-CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC--CC-----Cccc
Q 016351 77 FQGKTVLDVGTGSGILAIWSAQA-G-ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV--LP-----EKVD 146 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~l~~~~a~~-g-~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~--~~-----~~~D 146 (391)
.++.+|||||||+|..+..+++. + ..+|+++|++ .+++.|+++++.+++.++++++++|+.+.. +. ++||
T Consensus 63 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD 142 (225)
T 3tr6_A 63 MQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQYD 142 (225)
T ss_dssp HTCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCEE
T ss_pred hCCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCcc
Confidence 35689999999999999999987 2 4589999999 999999999999999888999999986642 11 6899
Q ss_pred EEEEccccccccCcchHHHHHHHHhccccCCeEEEcccc
Q 016351 147 VIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 147 ~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~~ 185 (391)
+|+++.. ......++..+.++|+|||+++....
T Consensus 143 ~v~~~~~------~~~~~~~l~~~~~~L~pgG~lv~~~~ 175 (225)
T 3tr6_A 143 LIYIDAD------KANTDLYYEESLKLLREGGLIAVDNV 175 (225)
T ss_dssp EEEECSC------GGGHHHHHHHHHHHEEEEEEEEEECS
T ss_pred EEEECCC------HHHHHHHHHHHHHhcCCCcEEEEeCC
Confidence 9997542 22456788999999999999986544
|
| >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=6.4e-13 Score=118.54 Aligned_cols=105 Identities=10% Similarity=0.111 Sum_probs=82.7
Q ss_pred CCCEEEEECCcccHHHHHHHHcC-CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccC-C--C-CCcccEEEEc
Q 016351 78 QGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDI-V--L-PEKVDVIISE 151 (391)
Q Consensus 78 ~~~~VLDlGcGtG~l~~~~a~~g-~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~-~--~-~~~~D~Ivse 151 (391)
++.+|||||||+|.++..+|+.. ..+|+|||++ .+++.|+++++.+++.+ ++++++|+.++ + + ++++|.|++.
T Consensus 34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l~n-v~~~~~Da~~~l~~~~~~~~~d~v~~~ 112 (218)
T 3dxy_A 34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGLSN-LRVMCHDAVEVLHKMIPDNSLRMVQLF 112 (218)
T ss_dssp CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTCSS-EEEECSCHHHHHHHHSCTTCEEEEEEE
T ss_pred CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCCCc-EEEEECCHHHHHHHHcCCCChheEEEe
Confidence 56799999999999999999874 3479999999 99999999999999877 99999999885 2 3 4899999985
Q ss_pred cccccccCcc-----hHHHHHHHHhccccCCeEEEcc
Q 016351 152 WMGYFLLRES-----MFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 152 ~~~~~~~~e~-----~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
.......... ..+.++..+.++|||||++++.
T Consensus 113 ~~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~ 149 (218)
T 3dxy_A 113 FPDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMA 149 (218)
T ss_dssp SCCCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEE
T ss_pred CCCCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEE
Confidence 3222111110 1135899999999999998764
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A | Back alignment and structure |
|---|
Probab=99.42 E-value=9.7e-13 Score=118.26 Aligned_cols=103 Identities=19% Similarity=0.204 Sum_probs=82.8
Q ss_pred cCCCCCCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEccccc----CCCCCccc
Q 016351 73 NKHHFQGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVED----IVLPEKVD 146 (391)
Q Consensus 73 ~~~~~~~~~VLDlGcGtG~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~----~~~~~~~D 146 (391)
.+...++.+|||+|||+|.++..+++. |..+|+|+|++ .+++.|+++++.+ ++++++.+|+.+ +.++++||
T Consensus 69 ~~~~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~---~~v~~~~~d~~~~~~~~~~~~~~D 145 (230)
T 1fbn_A 69 VMPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAER---ENIIPILGDANKPQEYANIVEKVD 145 (230)
T ss_dssp CCCCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTC---TTEEEEECCTTCGGGGTTTSCCEE
T ss_pred ccCCCCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcC---CCeEEEECCCCCcccccccCccEE
Confidence 334456789999999999999999987 65689999999 8999999887655 459999999987 55557899
Q ss_pred EEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 147 VIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 147 ~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
+|+++. ........++..+.++|+|||.++..
T Consensus 146 ~v~~~~-----~~~~~~~~~l~~~~~~LkpgG~l~i~ 177 (230)
T 1fbn_A 146 VIYEDV-----AQPNQAEILIKNAKWFLKKGGYGMIA 177 (230)
T ss_dssp EEEECC-----CSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEEEec-----CChhHHHHHHHHHHHhCCCCcEEEEE
Confidence 999643 12223467789999999999998875
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.42 E-value=1.2e-12 Score=116.17 Aligned_cols=105 Identities=12% Similarity=0.159 Sum_probs=83.8
Q ss_pred CCCEEEEECCcccHHHHHHHHcC-CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC--CC-CcccEEEEcc
Q 016351 78 QGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV--LP-EKVDVIISEW 152 (391)
Q Consensus 78 ~~~~VLDlGcGtG~l~~~~a~~g-~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~--~~-~~~D~Ivse~ 152 (391)
++.+|||||||+|.++..+++.. ..+|+|+|++ .+++.|++++..+++. +++++++|+.++. ++ ++||+|++..
T Consensus 41 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~D~i~~~~ 119 (214)
T 1yzh_A 41 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVP-NIKLLWVDGSDLTDYFEDGEIDRLYLNF 119 (214)
T ss_dssp CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCS-SEEEEECCSSCGGGTSCTTCCSEEEEES
T ss_pred CCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCCC-CEEEEeCCHHHHHhhcCCCCCCEEEEEC
Confidence 56899999999999999999874 3489999999 9999999999999884 5999999998865 44 7899999864
Q ss_pred cccccc--Cc---chHHHHHHHHhccccCCeEEEcc
Q 016351 153 MGYFLL--RE---SMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 153 ~~~~~~--~e---~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
...... ++ .....++..+.++|+|||.+++.
T Consensus 120 ~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 155 (214)
T 1yzh_A 120 SDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFK 155 (214)
T ss_dssp CCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEE
T ss_pred CCCccccchhhhccCCHHHHHHHHHHcCCCcEEEEE
Confidence 321110 00 02357899999999999998764
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.41 E-value=1.6e-12 Score=111.72 Aligned_cols=104 Identities=19% Similarity=0.241 Sum_probs=84.6
Q ss_pred HHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-Cccc
Q 016351 69 SIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVD 146 (391)
Q Consensus 69 ~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~-~~~D 146 (391)
.+...+...++.+|||+|||+|.++..+++ ...+|+++|++ .+++.|+++++.+++. +++++++|+.+ .++ ++||
T Consensus 26 ~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~-~~~~~~~d~~~-~~~~~~~D 102 (183)
T 2yxd_A 26 VSIGKLNLNKDDVVVDVGCGSGGMTVEIAK-RCKFVYAIDYLDGAIEVTKQNLAKFNIK-NCQIIKGRAED-VLDKLEFN 102 (183)
T ss_dssp HHHHHHCCCTTCEEEEESCCCSHHHHHHHT-TSSEEEEEECSHHHHHHHHHHHHHTTCC-SEEEEESCHHH-HGGGCCCS
T ss_pred HHHHHcCCCCCCEEEEeCCCCCHHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHHcCCC-cEEEEECCccc-cccCCCCc
Confidence 333444455778999999999999999998 45589999999 9999999999999884 49999999988 444 6899
Q ss_pred EEEEccccccccCcchHHHHHHHHhccccCCeEEEccc
Q 016351 147 VIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 147 ~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~ 184 (391)
+|++... .....++..+.++ |||.++...
T Consensus 103 ~i~~~~~-------~~~~~~l~~~~~~--~gG~l~~~~ 131 (183)
T 2yxd_A 103 KAFIGGT-------KNIEKIIEILDKK--KINHIVANT 131 (183)
T ss_dssp EEEECSC-------SCHHHHHHHHHHT--TCCEEEEEE
T ss_pred EEEECCc-------ccHHHHHHHHhhC--CCCEEEEEe
Confidence 9999654 3467788888887 999988654
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.41 E-value=6.2e-13 Score=123.00 Aligned_cols=100 Identities=22% Similarity=0.287 Sum_probs=82.3
Q ss_pred CCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEcc
Q 016351 74 KHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEW 152 (391)
Q Consensus 74 ~~~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~~D~Ivse~ 152 (391)
+...++.+|||||||+|.++..+++.+. +|+|+|+| .|++.|+++. .+++++.+|+.+++++++||+|++..
T Consensus 53 l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~------~~~~~~~~d~~~~~~~~~fD~v~~~~ 125 (279)
T 3ccf_A 53 LNPQPGEFILDLGCGTGQLTEKIAQSGA-EVLGTDNAATMIEKARQNY------PHLHFDVADARNFRVDKPLDAVFSNA 125 (279)
T ss_dssp HCCCTTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHC------TTSCEEECCTTTCCCSSCEEEEEEES
T ss_pred hCCCCCCEEEEecCCCCHHHHHHHhCCC-eEEEEECCHHHHHHHHhhC------CCCEEEECChhhCCcCCCcCEEEEcc
Confidence 3345678999999999999999998665 89999999 8999988764 23899999999987778999999854
Q ss_pred ccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 153 MGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 153 ~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
+.+.+ .+...++.++.++|+|||.++..
T Consensus 126 ~l~~~---~d~~~~l~~~~~~LkpgG~l~~~ 153 (279)
T 3ccf_A 126 MLHWV---KEPEAAIASIHQALKSGGRFVAE 153 (279)
T ss_dssp CGGGC---SCHHHHHHHHHHHEEEEEEEEEE
T ss_pred hhhhC---cCHHHHHHHHHHhcCCCcEEEEE
Confidence 33332 35678899999999999998864
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} | Back alignment and structure |
|---|
Probab=99.40 E-value=1.3e-12 Score=120.28 Aligned_cols=113 Identities=14% Similarity=0.159 Sum_probs=86.8
Q ss_pred HHHhcCCCCCCCEEEEECCcccHHHHHHHHc-CC-CeEEEEech-H------HHHHHHHHHHHcCCCCcEEEEEcc-c--
Q 016351 69 SIFQNKHHFQGKTVLDVGTGSGILAIWSAQA-GA-RKVYAVEAT-K------MSDHARTLVKANNLQDVVEVIEGS-V-- 136 (391)
Q Consensus 69 ~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~-g~-~~V~avD~s-~------~~~~a~~~~~~~~~~~~v~~i~~d-~-- 136 (391)
.+...+...++.+|||||||+|.++..+++. |. .+|+|+|+| . +++.|+++++.+++.++++++.+| .
T Consensus 34 ~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 113 (275)
T 3bkx_A 34 AIAEAWQVKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNLSD 113 (275)
T ss_dssp HHHHHHTCCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCCTTT
T ss_pred HHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECChhhh
Confidence 3444444567889999999999999999987 43 589999999 6 899999999998887779999998 3
Q ss_pred ccCCCC-CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEccc
Q 016351 137 EDIVLP-EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 137 ~~~~~~-~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~ 184 (391)
..++++ ++||+|++..+.+.+. ....++..++++++|||.++...
T Consensus 114 ~~~~~~~~~fD~v~~~~~l~~~~---~~~~~~~~~~~l~~~gG~l~~~~ 159 (275)
T 3bkx_A 114 DLGPIADQHFDRVVLAHSLWYFA---SANALALLFKNMAAVCDHVDVAE 159 (275)
T ss_dssp CCGGGTTCCCSEEEEESCGGGSS---CHHHHHHHHHHHTTTCSEEEEEE
T ss_pred ccCCCCCCCEEEEEEccchhhCC---CHHHHHHHHHHHhCCCCEEEEEE
Confidence 333333 7899999855433332 33457777778888899988653
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.40 E-value=1.6e-12 Score=118.43 Aligned_cols=105 Identities=12% Similarity=0.094 Sum_probs=84.3
Q ss_pred HHhcCCCCCCCEEEEECCcccHHHHHHHHc--CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCccc
Q 016351 70 IFQNKHHFQGKTVLDVGTGSGILAIWSAQA--GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVD 146 (391)
Q Consensus 70 i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~--g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~~D 146 (391)
+...+...++.+|||||||+|.++..+++. +. +|+++|+| .|++.|+++ . .+++++.+|+.++..+++||
T Consensus 25 l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~-~v~~~D~s~~~~~~a~~~-----~-~~~~~~~~d~~~~~~~~~fD 97 (259)
T 2p35_A 25 LLAQVPLERVLNGYDLGCGPGNSTELLTDRYGVN-VITGIDSDDDMLEKAADR-----L-PNTNFGKADLATWKPAQKAD 97 (259)
T ss_dssp HHTTCCCSCCSSEEEETCTTTHHHHHHHHHHCTT-SEEEEESCHHHHHHHHHH-----S-TTSEEEECCTTTCCCSSCEE
T ss_pred HHHhcCCCCCCEEEEecCcCCHHHHHHHHhCCCC-EEEEEECCHHHHHHHHHh-----C-CCcEEEECChhhcCccCCcC
Confidence 444444556789999999999999999887 44 79999999 899999876 1 34899999999887448899
Q ss_pred EEEEccccccccCcchHHHHHHHHhccccCCeEEEccc
Q 016351 147 VIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 147 ~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~ 184 (391)
+|++..+.+.+ .+...++..+.++|+|||.+++..
T Consensus 98 ~v~~~~~l~~~---~~~~~~l~~~~~~L~pgG~l~~~~ 132 (259)
T 2p35_A 98 LLYANAVFQWV---PDHLAVLSQLMDQLESGGVLAVQM 132 (259)
T ss_dssp EEEEESCGGGS---TTHHHHHHHHGGGEEEEEEEEEEE
T ss_pred EEEEeCchhhC---CCHHHHHHHHHHhcCCCeEEEEEe
Confidence 99995443333 357789999999999999998654
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=1.1e-12 Score=123.48 Aligned_cols=106 Identities=14% Similarity=0.128 Sum_probs=84.5
Q ss_pred CCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcC------CCCcEEEEEcccccCC----CC---C
Q 016351 78 QGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANN------LQDVVEVIEGSVEDIV----LP---E 143 (391)
Q Consensus 78 ~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~------~~~~v~~i~~d~~~~~----~~---~ 143 (391)
++.+|||||||+|.++..+++.+..+|+++|+| .|++.|+++....+ ...+++++++|+.++. ++ +
T Consensus 34 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 113 (313)
T 3bgv_A 34 RDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDPQM 113 (313)
T ss_dssp -CCEEEEETCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSSTTC
T ss_pred CCCEEEEECCCCcHHHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccCCC
Confidence 568999999999999999988766689999999 99999999887642 2235999999999875 32 4
Q ss_pred cccEEEEccccccc-cCcchHHHHHHHHhccccCCeEEEcc
Q 016351 144 KVDVIISEWMGYFL-LRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 144 ~~D~Ivse~~~~~~-~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
+||+|+|....+.. .....+..++..+.++|+|||.++..
T Consensus 114 ~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~ 154 (313)
T 3bgv_A 114 CFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGT 154 (313)
T ss_dssp CEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred CEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence 89999995543333 34345678999999999999999865
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=8.7e-13 Score=122.48 Aligned_cols=120 Identities=21% Similarity=0.203 Sum_probs=89.8
Q ss_pred HHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC
Q 016351 63 MDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL 141 (391)
Q Consensus 63 ~~~~~~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~ 141 (391)
++.+.+.+...+...++.+|||+|||+|.+++.+++.+..+|+|+|+| .+++.|+++++.+++.++++++++|+.+. +
T Consensus 108 te~lv~~~l~~~~~~~~~~vLDlG~GsG~~~~~la~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~~-~ 186 (284)
T 1nv8_A 108 TEELVELALELIRKYGIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEP-F 186 (284)
T ss_dssp HHHHHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGG-G
T ss_pred HHHHHHHHHHHhcccCCCEEEEEeCchhHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcchhh-c
Confidence 444554444433223557999999999999999998833489999999 99999999999999988899999999874 2
Q ss_pred CCcc---cEEEEcccccccc---------Ccch--------HHHHHHHHh-ccccCCeEEEccc
Q 016351 142 PEKV---DVIISEWMGYFLL---------RESM--------FDSVICARD-RWLKPTGVMYPSH 184 (391)
Q Consensus 142 ~~~~---D~Ivse~~~~~~~---------~e~~--------l~~~l~~~~-~~L~~gG~ii~~~ 184 (391)
+++| |+|+|++. |... ++.. -..++..+. +.|+|||.+++..
T Consensus 187 ~~~f~~~D~IvsnPP-yi~~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~e~ 249 (284)
T 1nv8_A 187 KEKFASIEMILSNPP-YVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEI 249 (284)
T ss_dssp GGGTTTCCEEEECCC-CBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEEC
T ss_pred ccccCCCCEEEEcCC-CCCcccccChhhccCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEEEE
Confidence 3678 99999753 2111 1111 115678888 9999999998653
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.39 E-value=1.7e-12 Score=115.41 Aligned_cols=105 Identities=13% Similarity=0.160 Sum_probs=82.7
Q ss_pred CCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC--CC-CcccEEEEcc
Q 016351 78 QGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV--LP-EKVDVIISEW 152 (391)
Q Consensus 78 ~~~~VLDlGcGtG~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~--~~-~~~D~Ivse~ 152 (391)
++.+|||||||+|.++..+|+. ...+|+|||+| .+++.|+++++.+++.+ ++++++|+.++. ++ +.+|.|++..
T Consensus 38 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~~n-v~~~~~d~~~l~~~~~~~~~d~v~~~~ 116 (213)
T 2fca_A 38 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQN-VKLLNIDADTLTDVFEPGEVKRVYLNF 116 (213)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSS-EEEECCCGGGHHHHCCTTSCCEEEEES
T ss_pred CCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCCCC-EEEEeCCHHHHHhhcCcCCcCEEEEEC
Confidence 5678999999999999999887 33489999999 99999999999998865 999999998864 33 7899998743
Q ss_pred cccccc--C---cchHHHHHHHHhccccCCeEEEcc
Q 016351 153 MGYFLL--R---ESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 153 ~~~~~~--~---e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
...... + .-....++..+.++|+|||.+++.
T Consensus 117 ~~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~ 152 (213)
T 2fca_A 117 SDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFK 152 (213)
T ss_dssp CCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEE
T ss_pred CCCCcCccccccccCcHHHHHHHHHHcCCCCEEEEE
Confidence 211110 0 001367899999999999999865
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.39 E-value=1.2e-12 Score=118.54 Aligned_cols=101 Identities=13% Similarity=-0.060 Sum_probs=82.0
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC------CcccEEE
Q 016351 77 FQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP------EKVDVII 149 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~------~~~D~Iv 149 (391)
.++.+|||||||+|.++..+++.+. +|+|+|+| .+++.|+++... .+++++++|+.++... ..||+|+
T Consensus 55 ~~~~~vLD~GcG~G~~~~~la~~~~-~v~gvD~s~~~~~~a~~~~~~----~~~~~~~~d~~~~~~~~~~~~~~~~d~v~ 129 (245)
T 3ggd_A 55 NPELPLIDFACGNGTQTKFLSQFFP-RVIGLDVSKSALEIAAKENTA----ANISYRLLDGLVPEQAAQIHSEIGDANIY 129 (245)
T ss_dssp CTTSCEEEETCTTSHHHHHHHHHSS-CEEEEESCHHHHHHHHHHSCC----TTEEEEECCTTCHHHHHHHHHHHCSCEEE
T ss_pred CCCCeEEEEcCCCCHHHHHHHHhCC-CEEEEECCHHHHHHHHHhCcc----cCceEEECcccccccccccccccCccEEE
Confidence 4668899999999999999999988 79999999 899999887621 2499999999886543 2489999
Q ss_pred EccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 150 SEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 150 se~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
+..+.+.+..+ ....++..+.++|+|||.+++.
T Consensus 130 ~~~~~~~~~~~-~~~~~l~~~~~~LkpgG~l~i~ 162 (245)
T 3ggd_A 130 MRTGFHHIPVE-KRELLGQSLRILLGKQGAMYLI 162 (245)
T ss_dssp EESSSTTSCGG-GHHHHHHHHHHHHTTTCEEEEE
T ss_pred EcchhhcCCHH-HHHHHHHHHHHHcCCCCEEEEE
Confidence 97655555332 5678999999999999987654
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A | Back alignment and structure |
|---|
Probab=99.39 E-value=9.3e-13 Score=127.61 Aligned_cols=105 Identities=26% Similarity=0.370 Sum_probs=85.6
Q ss_pred CCCCEEEEECCcccHHHHHHHHc--CCCeEEEEech-HHHHHHHHHHHHc-----C-CC-CcEEEEEcccccC------C
Q 016351 77 FQGKTVLDVGTGSGILAIWSAQA--GARKVYAVEAT-KMSDHARTLVKAN-----N-LQ-DVVEVIEGSVEDI------V 140 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~l~~~~a~~--g~~~V~avD~s-~~~~~a~~~~~~~-----~-~~-~~v~~i~~d~~~~------~ 140 (391)
.++.+|||||||+|.++..+++. ...+|+|+|+| .+++.|+++++.+ | +. .+++++++|+.++ +
T Consensus 82 ~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~~ 161 (383)
T 4fsd_A 82 LEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEG 161 (383)
T ss_dssp GTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSCC
T ss_pred CCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccCC
Confidence 46789999999999999998886 23489999999 9999999988765 3 22 4599999999987 5
Q ss_pred CC-CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEccc
Q 016351 141 LP-EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 141 ~~-~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~ 184 (391)
++ ++||+|++..+.+.+ .+...++..+.++|||||.+++..
T Consensus 162 ~~~~~fD~V~~~~~l~~~---~d~~~~l~~~~r~LkpgG~l~i~~ 203 (383)
T 4fsd_A 162 VPDSSVDIVISNCVCNLS---TNKLALFKEIHRVLRDGGELYFSD 203 (383)
T ss_dssp CCTTCEEEEEEESCGGGC---SCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCCCEEEEEEccchhcC---CCHHHHHHHHHHHcCCCCEEEEEE
Confidence 55 799999996544433 356789999999999999998754
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
Probab=99.39 E-value=1.3e-12 Score=115.68 Aligned_cols=101 Identities=24% Similarity=0.323 Sum_probs=84.3
Q ss_pred CCCEEEEECCcccHHHHHHHHcC--CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccC-C-CCCcccEEEEcc
Q 016351 78 QGKTVLDVGTGSGILAIWSAQAG--ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDI-V-LPEKVDVIISEW 152 (391)
Q Consensus 78 ~~~~VLDlGcGtG~l~~~~a~~g--~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~-~-~~~~~D~Ivse~ 152 (391)
++.+|||||||+|..+..+++.. ..+|+++|++ .+++.|+++++..++.++++++++|..+. + .++ ||+|+++.
T Consensus 56 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~-fD~v~~~~ 134 (210)
T 3c3p_A 56 QPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAGQRD-IDILFMDC 134 (210)
T ss_dssp CCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTTCCS-EEEEEEET
T ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhccCCC-CCEEEEcC
Confidence 56799999999999999999872 3489999999 99999999999998887899999999774 2 236 99999863
Q ss_pred ccccccCcchHHHHHHHHhccccCCeEEEcccc
Q 016351 153 MGYFLLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 153 ~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~~ 185 (391)
. ......+++.+.++|+|||+++....
T Consensus 135 ~------~~~~~~~l~~~~~~LkpgG~lv~~~~ 161 (210)
T 3c3p_A 135 D------VFNGADVLERMNRCLAKNALLIAVNA 161 (210)
T ss_dssp T------TSCHHHHHHHHGGGEEEEEEEEEESS
T ss_pred C------hhhhHHHHHHHHHhcCCCeEEEEECc
Confidence 1 12456789999999999999987554
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=7.5e-13 Score=120.44 Aligned_cols=103 Identities=15% Similarity=0.176 Sum_probs=85.7
Q ss_pred CCCCEEEEECCcccHHHHHHHHc-C-CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccC-C-C------CCcc
Q 016351 77 FQGKTVLDVGTGSGILAIWSAQA-G-ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDI-V-L------PEKV 145 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~l~~~~a~~-g-~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~-~-~------~~~~ 145 (391)
.++++|||||||+|..++.+++. + ..+|+++|++ .+++.|+++++..++.++|+++.+|+.+. + + .++|
T Consensus 78 ~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~f 157 (247)
T 1sui_A 78 INAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSY 157 (247)
T ss_dssp TTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTCB
T ss_pred hCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCCCE
Confidence 35689999999999999999987 2 3489999999 99999999999999988899999998764 1 2 4789
Q ss_pred cEEEEccccccccCcchHHHHHHHHhccccCCeEEEcccc
Q 016351 146 DVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 146 D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~~ 185 (391)
|+|+++.. ......+++.+.++|+|||+++....
T Consensus 158 D~V~~d~~------~~~~~~~l~~~~~~LkpGG~lv~d~~ 191 (247)
T 1sui_A 158 DFIFVDAD------KDNYLNYHKRLIDLVKVGGVIGYDNT 191 (247)
T ss_dssp SEEEECSC------STTHHHHHHHHHHHBCTTCCEEEECT
T ss_pred EEEEEcCc------hHHHHHHHHHHHHhCCCCeEEEEecC
Confidence 99998642 12456788999999999999987654
|
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=99.38 E-value=1.8e-12 Score=120.25 Aligned_cols=115 Identities=18% Similarity=0.260 Sum_probs=83.5
Q ss_pred HHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEec-h-HHHHHHHHHH-----HHcCCC----CcEEEE
Q 016351 64 DAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEA-T-KMSDHARTLV-----KANNLQ----DVVEVI 132 (391)
Q Consensus 64 ~~~~~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~-s-~~~~~a~~~~-----~~~~~~----~~v~~i 132 (391)
..+.+.+.......++++|||||||+|.+++.+++.|+.+|+|+|+ + .+++.|++++ +.+++. ++++++
T Consensus 65 ~~l~~~l~~~~~~~~~~~vLDlG~G~G~~~~~~a~~~~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~ 144 (281)
T 3bzb_A 65 RALADTLCWQPELIAGKTVCELGAGAGLVSIVAFLAGADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVV 144 (281)
T ss_dssp HHHHHHHHHCGGGTTTCEEEETTCTTSHHHHHHHHTTCSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEE
T ss_pred HHHHHHHHhcchhcCCCeEEEecccccHHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEE
Confidence 3444555555444577899999999999999999998778999999 8 8999999999 555554 358888
Q ss_pred Eccccc----CC---CCCcccEEEE-ccccccccCcchHHHHHHHHhcccc---C--CeEEEc
Q 016351 133 EGSVED----IV---LPEKVDVIIS-EWMGYFLLRESMFDSVICARDRWLK---P--TGVMYP 182 (391)
Q Consensus 133 ~~d~~~----~~---~~~~~D~Ivs-e~~~~~~~~e~~l~~~l~~~~~~L~---~--gG~ii~ 182 (391)
..+..+ +. ..++||+|++ +.+ .+......++..+.++|+ | ||++++
T Consensus 145 ~~~~~~~~~~~~~~~~~~~fD~Ii~~dvl----~~~~~~~~ll~~l~~~Lk~~~p~~gG~l~v 203 (281)
T 3bzb_A 145 PYRWGDSPDSLQRCTGLQRFQVVLLADLL----SFHQAHDALLRSVKMLLALPANDPTAVALV 203 (281)
T ss_dssp ECCTTSCTHHHHHHHSCSSBSEEEEESCC----SCGGGHHHHHHHHHHHBCCTTTCTTCEEEE
T ss_pred EecCCCccHHHHhhccCCCCCEEEEeCcc----cChHHHHHHHHHHHHHhcccCCCCCCEEEE
Confidence 666443 21 2478999997 332 233457788999999999 9 997654
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.38 E-value=2.3e-13 Score=123.40 Aligned_cols=105 Identities=17% Similarity=0.211 Sum_probs=87.1
Q ss_pred CCCCEEEEECCcccHHHHHHHHc-C-CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC--C-----CCccc
Q 016351 77 FQGKTVLDVGTGSGILAIWSAQA-G-ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV--L-----PEKVD 146 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~l~~~~a~~-g-~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~--~-----~~~~D 146 (391)
.++++|||||||+|..++.+++. + ..+|+++|++ .+++.|+++++.+++.++|+++.+|+.+.. + .++||
T Consensus 59 ~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~~~~~~~~~~fD 138 (242)
T 3r3h_A 59 TRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLLNEGGEHQFD 138 (242)
T ss_dssp HTCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHHHHHHHHHCSSCEE
T ss_pred cCcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHhhccCCCCEe
Confidence 35689999999999999999986 2 3489999999 999999999999999888999999997752 1 37899
Q ss_pred EEEEccccccccCcchHHHHHHHHhccccCCeEEEccccee
Q 016351 147 VIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHARM 187 (391)
Q Consensus 147 ~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~~~~ 187 (391)
+|+++.. ......+++.+.++|+|||+++.....+
T Consensus 139 ~V~~d~~------~~~~~~~l~~~~~~LkpGG~lv~d~~~~ 173 (242)
T 3r3h_A 139 FIFIDAD------KTNYLNYYELALKLVTPKGLIAIDNIFW 173 (242)
T ss_dssp EEEEESC------GGGHHHHHHHHHHHEEEEEEEEEECSSS
T ss_pred EEEEcCC------hHHhHHHHHHHHHhcCCCeEEEEECCcc
Confidence 9998642 2245668889999999999999765543
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 | Back alignment and structure |
|---|
Probab=99.38 E-value=2.4e-12 Score=121.48 Aligned_cols=109 Identities=20% Similarity=0.090 Sum_probs=86.3
Q ss_pred HHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCC--CeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC-C
Q 016351 67 FNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGA--RKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL-P 142 (391)
Q Consensus 67 ~~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g~--~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~-~ 142 (391)
...+...+...++.+|||||||+|.++..+++.+. .+|+++|++ .+++.|+++++.+++.+ ++++.+|..+... .
T Consensus 64 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~-v~~~~~d~~~~~~~~ 142 (317)
T 1dl5_A 64 MALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIEN-VIFVCGDGYYGVPEF 142 (317)
T ss_dssp HHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCS-EEEEESCGGGCCGGG
T ss_pred HHHHHHhcCCCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCC-eEEEECChhhccccC
Confidence 33444555566789999999999999999998753 369999999 99999999999999877 9999999988543 3
Q ss_pred CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcccc
Q 016351 143 EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 143 ~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~~ 185 (391)
++||+|++..+...+. +.+.++|+|||+++....
T Consensus 143 ~~fD~Iv~~~~~~~~~---------~~~~~~LkpgG~lvi~~~ 176 (317)
T 1dl5_A 143 SPYDVIFVTVGVDEVP---------ETWFTQLKEGGRVIVPIN 176 (317)
T ss_dssp CCEEEEEECSBBSCCC---------HHHHHHEEEEEEEEEEBC
T ss_pred CCeEEEEEcCCHHHHH---------HHHHHhcCCCcEEEEEEC
Confidence 7899999965433221 456778999999886543
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.38 E-value=1.5e-12 Score=120.17 Aligned_cols=100 Identities=23% Similarity=0.252 Sum_probs=83.9
Q ss_pred CCCCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEccc
Q 016351 76 HFQGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWM 153 (391)
Q Consensus 76 ~~~~~~VLDlGcGtG~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~~D~Ivse~~ 153 (391)
..++.+|||+|||+|.+++.+++. +..+|+|+|++ .+++.|+++++.|++.+ ++++++|+.+++..++||+|++++.
T Consensus 117 ~~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~l~~-~~~~~~d~~~~~~~~~~D~Vi~d~p 195 (272)
T 3a27_A 117 SNENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKLNN-VIPILADNRDVELKDVADRVIMGYV 195 (272)
T ss_dssp CCTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTTCSS-EEEEESCGGGCCCTTCEEEEEECCC
T ss_pred cCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCC-EEEEECChHHcCccCCceEEEECCc
Confidence 346789999999999999999987 45689999999 99999999999999976 8899999998833468999999764
Q ss_pred cccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 154 GYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 154 ~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
. ....++..+.+.|+|||+++..
T Consensus 196 ~-------~~~~~l~~~~~~LkpgG~l~~s 218 (272)
T 3a27_A 196 H-------KTHKFLDKTFEFLKDRGVIHYH 218 (272)
T ss_dssp S-------SGGGGHHHHHHHEEEEEEEEEE
T ss_pred c-------cHHHHHHHHHHHcCCCCEEEEE
Confidence 2 2344677778899999998854
|
| >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... | Back alignment and structure |
|---|
Probab=99.38 E-value=8e-13 Score=122.94 Aligned_cols=107 Identities=16% Similarity=0.209 Sum_probs=77.5
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHc-----------------CCC------------
Q 016351 77 FQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKAN-----------------NLQ------------ 126 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~-----------------~~~------------ 126 (391)
.++.+|||||||+|.++..+++.+..+|+|+|+| .|++.|+++++.. +..
T Consensus 70 ~~~~~vLDiGcG~G~~~~l~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 149 (289)
T 2g72_A 70 VSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRA 149 (289)
T ss_dssp SCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHH
T ss_pred CCCCeEEEECCCcChHHHHhhccCCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHHh
Confidence 4678999999999996665555434489999999 9999998865431 100
Q ss_pred CcEEEEEccccc-CCC-----C-CcccEEEEccccccccC-cchHHHHHHHHhccccCCeEEEcc
Q 016351 127 DVVEVIEGSVED-IVL-----P-EKVDVIISEWMGYFLLR-ESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 127 ~~v~~i~~d~~~-~~~-----~-~~~D~Ivse~~~~~~~~-e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
..++++.+|+.+ +++ + ++||+|+|..+.+.+.. ...+..++..+.++|||||.+++.
T Consensus 150 ~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~ 214 (289)
T 2g72_A 150 RVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLI 214 (289)
T ss_dssp HEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred hhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 026788889887 432 1 56999999654333222 235788999999999999999875
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.38 E-value=1.7e-12 Score=116.82 Aligned_cols=103 Identities=21% Similarity=0.294 Sum_probs=86.2
Q ss_pred CCCCEEEEECCcccHHHHHHHHcC-CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccC-C-C--CCcccEEEE
Q 016351 77 FQGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDI-V-L--PEKVDVIIS 150 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~l~~~~a~~g-~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~-~-~--~~~~D~Ivs 150 (391)
.++.+|||||||+|.++..+++.. ..+|+++|++ .+++.|+++++.+++.++++++.+|+.+. + . +++||+|++
T Consensus 53 ~~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~ 132 (233)
T 2gpy_A 53 AAPARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLELYPLFDVLFI 132 (233)
T ss_dssp HCCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHTTSCCEEEEEE
T ss_pred cCCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhcccCCCccEEEE
Confidence 356899999999999999999873 3589999999 99999999999999987899999999874 2 2 368999998
Q ss_pred ccccccccCcchHHHHHHHHhccccCCeEEEcccc
Q 016351 151 EWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 151 e~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~~ 185 (391)
+... .....++..+.++|+|||+++....
T Consensus 133 ~~~~------~~~~~~l~~~~~~L~pgG~lv~~~~ 161 (233)
T 2gpy_A 133 DAAK------GQYRRFFDMYSPMVRPGGLILSDNV 161 (233)
T ss_dssp EGGG------SCHHHHHHHHGGGEEEEEEEEEETT
T ss_pred CCCH------HHHHHHHHHHHHHcCCCeEEEEEcC
Confidence 5431 1456789999999999999987644
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=99.37 E-value=2.3e-13 Score=120.19 Aligned_cols=119 Identities=18% Similarity=0.141 Sum_probs=71.8
Q ss_pred HHHHHHHHHhcCCC-CCCCEEEEECCcccHHHHHHHHcCC-CeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccC
Q 016351 63 MDAYFNSIFQNKHH-FQGKTVLDVGTGSGILAIWSAQAGA-RKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDI 139 (391)
Q Consensus 63 ~~~~~~~i~~~~~~-~~~~~VLDlGcGtG~l~~~~a~~g~-~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~ 139 (391)
.+.+.+.+...+.. .++.+|||+|||+|.++..+++.+. .+|+|+|++ .+++.|++++..+++ +++++++|+.+.
T Consensus 14 ~~~~~~~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~ 91 (215)
T 4dzr_A 14 TEVLVEEAIRFLKRMPSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGA--VVDWAAADGIEW 91 (215)
T ss_dssp HHHHHHHHHHHHTTCCTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC---------------------CCHHHHHHH
T ss_pred HHHHHHHHHHHhhhcCCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhCC--ceEEEEcchHhh
Confidence 44455555544433 5678999999999999999999853 389999999 999999999998887 499999999873
Q ss_pred CCC-----CcccEEEEccccccccC------c-----------------chHHHHHHHHhccccCCeE-EEcc
Q 016351 140 VLP-----EKVDVIISEWMGYFLLR------E-----------------SMFDSVICARDRWLKPTGV-MYPS 183 (391)
Q Consensus 140 ~~~-----~~~D~Ivse~~~~~~~~------e-----------------~~l~~~l~~~~~~L~~gG~-ii~~ 183 (391)
... ++||+|++++..+.... + ..+..++..+.++|+|||+ ++..
T Consensus 92 ~~~~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 164 (215)
T 4dzr_A 92 LIERAERGRPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLE 164 (215)
T ss_dssp HHHHHHTTCCBSEEEECCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEE
T ss_pred hhhhhhccCcccEEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 222 78999999753211100 0 0116778888999999999 5543
|
| >1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A | Back alignment and structure |
|---|
Probab=99.37 E-value=5.8e-13 Score=121.28 Aligned_cols=113 Identities=15% Similarity=0.024 Sum_probs=84.4
Q ss_pred HHhcCCCCCCCEEEEECCcccHHHHHHHHc---CCCeEEEEech-HHHHHHHHHHHHc---CCCCc--------------
Q 016351 70 IFQNKHHFQGKTVLDVGTGSGILAIWSAQA---GARKVYAVEAT-KMSDHARTLVKAN---NLQDV-------------- 128 (391)
Q Consensus 70 i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~---g~~~V~avD~s-~~~~~a~~~~~~~---~~~~~-------------- 128 (391)
+...+...++.+|||+|||+|.+++.+++. +..+|+|+|+| .+++.|++++..+ ++.++
T Consensus 43 ~l~~~~~~~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (250)
T 1o9g_A 43 ALARLPGDGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKP 122 (250)
T ss_dssp HHHTSSCCSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCH
T ss_pred HHHhcccCCCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhhhcccc
Confidence 333333345679999999999999999876 23489999999 9999999988776 55333
Q ss_pred -----------EE-------------EEEcccccCC------CCCcccEEEEccccccccC------cchHHHHHHHHhc
Q 016351 129 -----------VE-------------VIEGSVEDIV------LPEKVDVIISEWMGYFLLR------ESMFDSVICARDR 172 (391)
Q Consensus 129 -----------v~-------------~i~~d~~~~~------~~~~~D~Ivse~~~~~~~~------e~~l~~~l~~~~~ 172 (391)
++ ++++|+.+.. ..++||+|+|++....... ......++..+.+
T Consensus 123 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~~~ 202 (250)
T 1o9g_A 123 SYLEAAQAARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLAS 202 (250)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHH
T ss_pred cchhhhhhhhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHHHHHHHHH
Confidence 66 9999998754 2358999999763222111 1345688999999
Q ss_pred cccCCeEEEc
Q 016351 173 WLKPTGVMYP 182 (391)
Q Consensus 173 ~L~~gG~ii~ 182 (391)
+|+|||++++
T Consensus 203 ~LkpgG~l~~ 212 (250)
T 1o9g_A 203 ALPAHAVIAV 212 (250)
T ss_dssp HSCTTCEEEE
T ss_pred hcCCCcEEEE
Confidence 9999999886
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.36 E-value=4.7e-12 Score=109.84 Aligned_cols=99 Identities=20% Similarity=0.254 Sum_probs=80.7
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-CcccEEEEc-cc
Q 016351 77 FQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIISE-WM 153 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~-~~~D~Ivse-~~ 153 (391)
.++.+|||+|||+|.++..+++.+. +|+++|++ .+++.|+++.. +++++++|+.+++++ ++||+|++. .+
T Consensus 45 ~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~~D~~~~~~~~a~~~~~------~~~~~~~d~~~~~~~~~~~D~i~~~~~~ 117 (195)
T 3cgg_A 45 PRGAKILDAGCGQGRIGGYLSKQGH-DVLGTDLDPILIDYAKQDFP------EARWVVGDLSVDQISETDFDLIVSAGNV 117 (195)
T ss_dssp CTTCEEEEETCTTTHHHHHHHHTTC-EEEEEESCHHHHHHHHHHCT------TSEEEECCTTTSCCCCCCEEEEEECCCC
T ss_pred cCCCeEEEECCCCCHHHHHHHHCCC-cEEEEcCCHHHHHHHHHhCC------CCcEEEcccccCCCCCCceeEEEECCcH
Confidence 3678999999999999999999876 89999999 89998887652 289999999987765 789999995 33
Q ss_pred cccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 154 GYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 154 ~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
.+.. .......++..+.++|+|||.++..
T Consensus 118 ~~~~-~~~~~~~~l~~~~~~l~~~G~l~~~ 146 (195)
T 3cgg_A 118 MGFL-AEDGREPALANIHRALGADGRAVIG 146 (195)
T ss_dssp GGGS-CHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred Hhhc-ChHHHHHHHHHHHHHhCCCCEEEEE
Confidence 2322 2234678899999999999998864
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=99.36 E-value=4e-12 Score=113.80 Aligned_cols=100 Identities=24% Similarity=0.301 Sum_probs=80.0
Q ss_pred CCCCCEEEEECCcccHHHHHHHHc-C-CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccC----CCCCcccEE
Q 016351 76 HFQGKTVLDVGTGSGILAIWSAQA-G-ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDI----VLPEKVDVI 148 (391)
Q Consensus 76 ~~~~~~VLDlGcGtG~l~~~~a~~-g-~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~----~~~~~~D~I 148 (391)
..++.+|||+|||+|.++..+++. | ..+|+|+|++ .+++.++++++.+ .+++++++|+.+. ..+++||+|
T Consensus 71 ~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~---~~v~~~~~d~~~~~~~~~~~~~~D~v 147 (227)
T 1g8a_A 71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEER---RNIVPILGDATKPEEYRALVPKVDVI 147 (227)
T ss_dssp CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSC---TTEEEEECCTTCGGGGTTTCCCEEEE
T ss_pred CCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhcc---CCCEEEEccCCCcchhhcccCCceEE
Confidence 456789999999999999999976 4 2589999999 8999998888765 4599999999873 234689999
Q ss_pred EEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 149 ISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 149 vse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
+++.. .......++..+.++|+|||.++..
T Consensus 148 ~~~~~-----~~~~~~~~l~~~~~~LkpgG~l~~~ 177 (227)
T 1g8a_A 148 FEDVA-----QPTQAKILIDNAEVYLKRGGYGMIA 177 (227)
T ss_dssp EECCC-----STTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred EECCC-----CHhHHHHHHHHHHHhcCCCCEEEEE
Confidence 98653 2223345588999999999998865
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=2.7e-12 Score=119.59 Aligned_cols=104 Identities=16% Similarity=0.136 Sum_probs=73.9
Q ss_pred CCCCEEEEECCcccHHHHHH----HHc-CCCeE--EEEech-HHHHHHHHHHHHc-CCCC-cEEEEEcccccCC------
Q 016351 77 FQGKTVLDVGTGSGILAIWS----AQA-GARKV--YAVEAT-KMSDHARTLVKAN-NLQD-VVEVIEGSVEDIV------ 140 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~l~~~~----a~~-g~~~V--~avD~s-~~~~~a~~~~~~~-~~~~-~v~~i~~d~~~~~------ 140 (391)
.++.+|||||||+|.++..+ +.. ...+| +|+|+| .|++.|+++++.. ++.+ ++.+..++..++.
T Consensus 51 ~~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 130 (292)
T 2aot_A 51 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEK 130 (292)
T ss_dssp CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHTT
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhccc
Confidence 34579999999999765432 222 22334 999999 9999999988764 4443 2345566666543
Q ss_pred C-CCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 141 L-PEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 141 ~-~~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
+ +++||+|++..+.+. -.++...+.+++++|||||.+++.
T Consensus 131 ~~~~~fD~V~~~~~l~~---~~d~~~~l~~~~r~LkpgG~l~i~ 171 (292)
T 2aot_A 131 KELQKWDFIHMIQMLYY---VKDIPATLKFFHSLLGTNAKMLII 171 (292)
T ss_dssp TCCCCEEEEEEESCGGG---CSCHHHHHHHHHHTEEEEEEEEEE
T ss_pred cCCCceeEEEEeeeeee---cCCHHHHHHHHHHHcCCCcEEEEE
Confidence 2 378999998543333 345778999999999999998865
|
| >3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=99.36 E-value=1.6e-12 Score=126.42 Aligned_cols=109 Identities=21% Similarity=0.237 Sum_probs=89.4
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCC-CCcEEEEEcccccCCC-----CCcccEEE
Q 016351 77 FQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNL-QDVVEVIEGSVEDIVL-----PEKVDVII 149 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~-~~~v~~i~~d~~~~~~-----~~~~D~Iv 149 (391)
.++.+|||+|||+|.+++.+++.|+.+|+|+|++ .+++.|+++++.|++ .++++++++|+.++.. .++||+|+
T Consensus 219 ~~~~~VLDl~cG~G~~sl~la~~g~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~~~~fD~Ii 298 (396)
T 3c0k_A 219 VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV 298 (396)
T ss_dssp CTTCEEEEESCTTCSHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred hCCCeEEEeeccCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHhcCCCCCEEE
Confidence 3678999999999999999999988799999999 999999999999999 6569999999987632 36899999
Q ss_pred Eccccccc------cCcchHHHHHHHHhccccCCeEEEcccc
Q 016351 150 SEWMGYFL------LRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 150 se~~~~~~------~~e~~l~~~l~~~~~~L~~gG~ii~~~~ 185 (391)
+++..... .....+..++..+.++|+|||+++.+..
T Consensus 299 ~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 340 (396)
T 3c0k_A 299 MDPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTFSC 340 (396)
T ss_dssp ECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred ECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 98743211 1113466788888999999999986544
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.36 E-value=4.5e-12 Score=113.66 Aligned_cols=107 Identities=24% Similarity=0.236 Sum_probs=83.1
Q ss_pred HHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccC-CCCC
Q 016351 66 YFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDI-VLPE 143 (391)
Q Consensus 66 ~~~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~-~~~~ 143 (391)
....+...+...++.+|||||||+|.++..+++.+ .+|+++|++ .+++.|+++...++ +++++.+|+.+. ...+
T Consensus 58 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~~~---~v~~~~~d~~~~~~~~~ 133 (231)
T 1vbf_A 58 LGIFMLDELDLHKGQKVLEIGTGIGYYTALIAEIV-DKVVSVEINEKMYNYASKLLSYYN---NIKLILGDGTLGYEEEK 133 (231)
T ss_dssp HHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHS-SEEEEEESCHHHHHHHHHHHTTCS---SEEEEESCGGGCCGGGC
T ss_pred HHHHHHHhcCCCCCCEEEEEcCCCCHHHHHHHHHc-CEEEEEeCCHHHHHHHHHHHhhcC---CeEEEECCcccccccCC
Confidence 33445555555677899999999999999999988 489999999 99999999988776 499999999873 2237
Q ss_pred cccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcccc
Q 016351 144 KVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 144 ~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~~ 185 (391)
+||+|++....+.+ .+.+.++|+|||+++....
T Consensus 134 ~fD~v~~~~~~~~~---------~~~~~~~L~pgG~l~~~~~ 166 (231)
T 1vbf_A 134 PYDRVVVWATAPTL---------LCKPYEQLKEGGIMILPIG 166 (231)
T ss_dssp CEEEEEESSBBSSC---------CHHHHHTEEEEEEEEEEEC
T ss_pred CccEEEECCcHHHH---------HHHHHHHcCCCcEEEEEEc
Confidence 89999985433222 1356789999999886533
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.35 E-value=3.6e-12 Score=122.11 Aligned_cols=119 Identities=22% Similarity=0.195 Sum_probs=93.8
Q ss_pred HHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcC--CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC
Q 016351 64 DAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAG--ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV 140 (391)
Q Consensus 64 ~~~~~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g--~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~ 140 (391)
+.+..++.......++..|||+|||+|.+++.++..+ ..+|+|+|++ .+++.|+++++.+++. +++++++|+.++.
T Consensus 189 ~~la~~l~~~~~~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~-~i~~~~~D~~~~~ 267 (354)
T 3tma_A 189 PVLAQALLRLADARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLS-WIRFLRADARHLP 267 (354)
T ss_dssp HHHHHHHHHHTTCCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCT-TCEEEECCGGGGG
T ss_pred HHHHHHHHHHhCCCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCC-ceEEEeCChhhCc
Confidence 3455556666666677899999999999999999864 2479999999 9999999999999997 6999999999986
Q ss_pred CC-CcccEEEEcccccc-ccCc----chHHHHHHHHhccccCCeEEEcc
Q 016351 141 LP-EKVDVIISEWMGYF-LLRE----SMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 141 ~~-~~~D~Ivse~~~~~-~~~e----~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
.+ +.||+|++++.... +... .....++..+.++|+|||.+++.
T Consensus 268 ~~~~~~D~Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~ 316 (354)
T 3tma_A 268 RFFPEVDRILANPPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALL 316 (354)
T ss_dssp GTCCCCSEEEECCCSCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEE
T ss_pred cccCCCCEEEECCCCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 55 67899999874221 1111 12367888899999999998864
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=99.35 E-value=1.7e-12 Score=117.37 Aligned_cols=103 Identities=13% Similarity=0.151 Sum_probs=85.8
Q ss_pred CCCCEEEEECCcccHHHHHHHHc-C-CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC--C------CCcc
Q 016351 77 FQGKTVLDVGTGSGILAIWSAQA-G-ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV--L------PEKV 145 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~l~~~~a~~-g-~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~--~------~~~~ 145 (391)
.++++|||||||+|..++.+++. + ..+|+++|++ .+++.|+++++..++.++|+++.+|..+.. + .++|
T Consensus 69 ~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~f 148 (237)
T 3c3y_A 69 VNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGSY 148 (237)
T ss_dssp TTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTCE
T ss_pred hCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCCc
Confidence 35689999999999999999987 2 3589999999 999999999999999888999999987641 2 4789
Q ss_pred cEEEEccccccccCcchHHHHHHHHhccccCCeEEEcccc
Q 016351 146 DVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 146 D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~~ 185 (391)
|+|+++.. ......+++.+.++|+|||+++....
T Consensus 149 D~I~~d~~------~~~~~~~l~~~~~~L~pGG~lv~d~~ 182 (237)
T 3c3y_A 149 DFGFVDAD------KPNYIKYHERLMKLVKVGGIVAYDNT 182 (237)
T ss_dssp EEEEECSC------GGGHHHHHHHHHHHEEEEEEEEEECT
T ss_pred CEEEECCc------hHHHHHHHHHHHHhcCCCeEEEEecC
Confidence 99998642 12456788999999999999987654
|
| >1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 | Back alignment and structure |
|---|
Probab=99.35 E-value=6.4e-12 Score=122.45 Aligned_cols=114 Identities=18% Similarity=0.194 Sum_probs=86.8
Q ss_pred HHHHHhcCCCCCCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHH-------HHHHHHcCCC-CcEEEEEccc
Q 016351 67 FNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHA-------RTLVKANNLQ-DVVEVIEGSV 136 (391)
Q Consensus 67 ~~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~-g~~~V~avD~s-~~~~~a-------~~~~~~~~~~-~~v~~i~~d~ 136 (391)
...+.+.+...++.+|||||||+|.++..+|+. +..+|+|||++ .+++.| +++++..|+. ++|+++++|.
T Consensus 231 v~~ml~~l~l~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~gD~ 310 (433)
T 1u2z_A 231 LSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKS 310 (433)
T ss_dssp HHHHHHHTTCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSC
T ss_pred HHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEEcCc
Confidence 344555555667899999999999999999986 66689999999 888888 8888888853 4599999754
Q ss_pred ccC--C---CCCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEccc
Q 016351 137 EDI--V---LPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 137 ~~~--~---~~~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~ 184 (391)
... . ..++||+|++... +.. ..+...+.++.+.|+|||.++...
T Consensus 311 ~~~~~~~~~~~~~FDvIvvn~~---l~~-~d~~~~L~el~r~LKpGG~lVi~d 359 (433)
T 1u2z_A 311 FVDNNRVAELIPQCDVILVNNF---LFD-EDLNKKVEKILQTAKVGCKIISLK 359 (433)
T ss_dssp STTCHHHHHHGGGCSEEEECCT---TCC-HHHHHHHHHHHTTCCTTCEEEESS
T ss_pred cccccccccccCCCCEEEEeCc---ccc-ccHHHHHHHHHHhCCCCeEEEEee
Confidence 321 1 1368999998432 222 356677899999999999988653
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=2.2e-12 Score=133.83 Aligned_cols=108 Identities=18% Similarity=0.214 Sum_probs=90.3
Q ss_pred CCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCC-CcEEEEEcccccC-C-CCCcccEEEEccc
Q 016351 78 QGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQ-DVVEVIEGSVEDI-V-LPEKVDVIISEWM 153 (391)
Q Consensus 78 ~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~-~~v~~i~~d~~~~-~-~~~~~D~Ivse~~ 153 (391)
++++|||+|||+|.+++.+++.|+.+|++||+| .+++.|+++++.|++. ++++++++|+.++ . ..++||+|++++.
T Consensus 539 ~g~~VLDlg~GtG~~sl~aa~~ga~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~~~~~fD~Ii~DPP 618 (703)
T 3v97_A 539 KGKDFLNLFSYTGSATVHAGLGGARSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLREANEQFDLIFIDPP 618 (703)
T ss_dssp TTCEEEEESCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHHHHCCCCEEEEEECCC
T ss_pred CCCcEEEeeechhHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHhcCCCccEEEECCc
Confidence 678999999999999999999999889999999 9999999999999997 5799999999884 2 2378999999875
Q ss_pred ccc--------ccCcchHHHHHHHHhccccCCeEEEcccc
Q 016351 154 GYF--------LLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 154 ~~~--------~~~e~~l~~~l~~~~~~L~~gG~ii~~~~ 185 (391)
.+. .........++..+.++|+|||+++.+..
T Consensus 619 ~f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~ 658 (703)
T 3v97_A 619 TFSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNN 658 (703)
T ss_dssp SBC-------CCBHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred cccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEEC
Confidence 321 11223466788889999999999996544
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.35 E-value=5e-12 Score=113.74 Aligned_cols=102 Identities=23% Similarity=0.232 Sum_probs=80.6
Q ss_pred CCCCCCCEEEEECCcccHHHHHHHHc-C-CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC---C-CCccc
Q 016351 74 KHHFQGKTVLDVGTGSGILAIWSAQA-G-ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV---L-PEKVD 146 (391)
Q Consensus 74 ~~~~~~~~VLDlGcGtG~l~~~~a~~-g-~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~---~-~~~~D 146 (391)
+...++.+|||+|||+|.++..+++. | ..+|+|+|++ .+++.+.++++.+ .+++++.+|+.+.. . .++||
T Consensus 73 ~~~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~---~~v~~~~~d~~~~~~~~~~~~~~D 149 (233)
T 2ipx_A 73 IHIKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKR---TNIIPVIEDARHPHKYRMLIAMVD 149 (233)
T ss_dssp CCCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHC---TTEEEECSCTTCGGGGGGGCCCEE
T ss_pred ecCCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhcc---CCeEEEEcccCChhhhcccCCcEE
Confidence 33456789999999999999999987 3 3589999999 8888888888776 34999999998742 2 37899
Q ss_pred EEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 147 VIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 147 ~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
+|+++.. .......++..+.++|+|||+++..
T Consensus 150 ~V~~~~~-----~~~~~~~~~~~~~~~LkpgG~l~i~ 181 (233)
T 2ipx_A 150 VIFADVA-----QPDQTRIVALNAHTFLRNGGHFVIS 181 (233)
T ss_dssp EEEECCC-----CTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEEEcCC-----CccHHHHHHHHHHHHcCCCeEEEEE
Confidence 9999654 1223355678899999999999874
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.35 E-value=6.3e-12 Score=111.41 Aligned_cols=107 Identities=21% Similarity=0.160 Sum_probs=83.2
Q ss_pred HHHHhcCCCCCCCEEEEECCcccHHHHHHHHcC-C-CeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC-CC
Q 016351 68 NSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAG-A-RKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL-PE 143 (391)
Q Consensus 68 ~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g-~-~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~-~~ 143 (391)
..+...+...++.+|||||||+|.++..+++.+ . .+|+++|++ .+++.|++++..+++.+ ++++.+|+..... .+
T Consensus 67 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~~ 145 (215)
T 2yxe_A 67 GMMCELLDLKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDN-VIVIVGDGTLGYEPLA 145 (215)
T ss_dssp HHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTT-EEEEESCGGGCCGGGC
T ss_pred HHHHHhhCCCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCC-eEEEECCcccCCCCCC
Confidence 344445555678899999999999999999875 2 589999999 99999999999888866 9999999865332 36
Q ss_pred cccEEEEccccccccCcchHHHHHHHHhccccCCeEEEccc
Q 016351 144 KVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 144 ~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~ 184 (391)
+||+|++....+.+ .+.+.++|+|||+++...
T Consensus 146 ~fD~v~~~~~~~~~---------~~~~~~~L~pgG~lv~~~ 177 (215)
T 2yxe_A 146 PYDRIYTTAAGPKI---------PEPLIRQLKDGGKLLMPV 177 (215)
T ss_dssp CEEEEEESSBBSSC---------CHHHHHTEEEEEEEEEEE
T ss_pred CeeEEEECCchHHH---------HHHHHHHcCCCcEEEEEE
Confidence 89999985432221 136778999999987553
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.35 E-value=6.1e-12 Score=119.31 Aligned_cols=107 Identities=14% Similarity=0.177 Sum_probs=88.2
Q ss_pred CCCCEEEEECCcccHHHHHHHHc-CCCeEEEEechHHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEccccc
Q 016351 77 FQGKTVLDVGTGSGILAIWSAQA-GARKVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMGY 155 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~l~~~~a~~-g~~~V~avD~s~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~~D~Ivse~~~~ 155 (391)
.++.+|||||||+|.++..+++. ...+++++|++.+++.|++++...++.++|+++.+|+.+.++++.||+|++..+.+
T Consensus 164 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~v~~~~~l~ 243 (335)
T 2r3s_A 164 IEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWASVLEVAKENARIQGVASRYHTIAGSAFEVDYGNDYDLVLLPNFLH 243 (335)
T ss_dssp CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHHTCGGGEEEEESCTTTSCCCSCEEEEEEESCGG
T ss_pred CCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecHHHHHHHHHHHHhcCCCcceEEEecccccCCCCCCCcEEEEcchhc
Confidence 56689999999999999999887 23489999999889999999999888888999999999877676799999854433
Q ss_pred cccCcchHHHHHHHHhccccCCeEEEccc
Q 016351 156 FLLRESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 156 ~~~~e~~l~~~l~~~~~~L~~gG~ii~~~ 184 (391)
.+.. .....+++.+.+.|+|||.+++..
T Consensus 244 ~~~~-~~~~~~l~~~~~~L~pgG~l~i~e 271 (335)
T 2r3s_A 244 HFDV-ATCEQLLRKIKTALAVEGKVIVFD 271 (335)
T ss_dssp GSCH-HHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cCCH-HHHHHHHHHHHHhCCCCcEEEEEe
Confidence 3322 245688999999999999887643
|
| >2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 | Back alignment and structure |
|---|
Probab=99.34 E-value=2e-12 Score=125.82 Aligned_cols=109 Identities=26% Similarity=0.311 Sum_probs=89.2
Q ss_pred CCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC-----CCcccEEEEc
Q 016351 78 QGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL-----PEKVDVIISE 151 (391)
Q Consensus 78 ~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~-----~~~~D~Ivse 151 (391)
++.+|||+|||+|.+++.+++.|+++|+|+|++ .+++.|+++++.|++.++++++++|+.++.. .++||+|+++
T Consensus 217 ~~~~VLDl~~G~G~~~~~la~~g~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~~~~~fD~Vi~d 296 (396)
T 2as0_A 217 PGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVLD 296 (396)
T ss_dssp TTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCCeEEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHHHHHhhCCCCCEEEEC
Confidence 678999999999999999999888899999999 9999999999999997679999999987532 3689999998
Q ss_pred cccccccC------cchHHHHHHHHhccccCCeEEEcccce
Q 016351 152 WMGYFLLR------ESMFDSVICARDRWLKPTGVMYPSHAR 186 (391)
Q Consensus 152 ~~~~~~~~------e~~l~~~l~~~~~~L~~gG~ii~~~~~ 186 (391)
+..+.... ......++..+.++|+|||.++...++
T Consensus 297 pP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~ 337 (396)
T 2as0_A 297 PPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCS 337 (396)
T ss_dssp CCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECC
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEECC
Confidence 74322111 123566788889999999998866543
|
| >3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A | Back alignment and structure |
|---|
Probab=99.34 E-value=2.4e-12 Score=118.97 Aligned_cols=111 Identities=15% Similarity=0.050 Sum_probs=88.6
Q ss_pred CCCCCEEEEECCcccHHHHHHHHc--CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC-----CCcccE
Q 016351 76 HFQGKTVLDVGTGSGILAIWSAQA--GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL-----PEKVDV 147 (391)
Q Consensus 76 ~~~~~~VLDlGcGtG~l~~~~a~~--g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~-----~~~~D~ 147 (391)
..++.+|||+|||+|..+..+++. +..+|+|+|++ .+++.++++++.+++. +++++++|+.++.. .++||+
T Consensus 81 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~-~v~~~~~D~~~~~~~~~~~~~~fD~ 159 (274)
T 3ajd_A 81 PREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVL-NTIIINADMRKYKDYLLKNEIFFDK 159 (274)
T ss_dssp CCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEESCHHHHHHHHHHTTCCEEE
T ss_pred CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCC-cEEEEeCChHhcchhhhhccccCCE
Confidence 457789999999999999998884 44689999999 8999999999999987 49999999988653 478999
Q ss_pred EEEcccccccc---------------CcchHHHHHHHHhccccCCeEEEccccee
Q 016351 148 IISEWMGYFLL---------------RESMFDSVICARDRWLKPTGVMYPSHARM 187 (391)
Q Consensus 148 Ivse~~~~~~~---------------~e~~l~~~l~~~~~~L~~gG~ii~~~~~~ 187 (391)
|++++..+... .......++..+.++|||||+++.+.++.
T Consensus 160 Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stcs~ 214 (274)
T 3ajd_A 160 ILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCSM 214 (274)
T ss_dssp EEEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred EEEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEECCC
Confidence 99975432211 00234678899999999999998766544
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.34 E-value=5.8e-12 Score=110.98 Aligned_cols=99 Identities=21% Similarity=0.184 Sum_probs=79.5
Q ss_pred CCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEcccc
Q 016351 76 HFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMG 154 (391)
Q Consensus 76 ~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~~D~Ivse~~~ 154 (391)
..++.+|||+|||+|.++..+++.|..+|+|+|++ .+++.|+++++.+++ +++++++|+.+++ ++||+|++++..
T Consensus 47 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~--~~~D~v~~~~p~ 122 (207)
T 1wy7_A 47 DIEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKG--KFKVFIGDVSEFN--SRVDIVIMNPPF 122 (207)
T ss_dssp SSTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTT--SEEEEESCGGGCC--CCCSEEEECCCC
T ss_pred CCCcCEEEEeeCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCC--CEEEEECchHHcC--CCCCEEEEcCCC
Confidence 45678999999999999999999987789999999 999999999998887 4999999999864 689999998753
Q ss_pred ccccCcchHHHHHHHHhccccCCeEEE
Q 016351 155 YFLLRESMFDSVICARDRWLKPTGVMY 181 (391)
Q Consensus 155 ~~~~~e~~l~~~l~~~~~~L~~gG~ii 181 (391)
+... ......+++.+.++| |++++
T Consensus 123 ~~~~-~~~~~~~l~~~~~~l--~~~~~ 146 (207)
T 1wy7_A 123 GSQR-KHADRPFLLKAFEIS--DVVYS 146 (207)
T ss_dssp SSSS-TTTTHHHHHHHHHHC--SEEEE
T ss_pred cccc-CCchHHHHHHHHHhc--CcEEE
Confidence 3222 223456677777777 55443
|
| >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 | Back alignment and structure |
|---|
Probab=99.34 E-value=4.6e-12 Score=115.45 Aligned_cols=121 Identities=14% Similarity=0.099 Sum_probs=82.9
Q ss_pred HHHHHHHHHhcCCC--CCCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEccccc
Q 016351 63 MDAYFNSIFQNKHH--FQGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVED 138 (391)
Q Consensus 63 ~~~~~~~i~~~~~~--~~~~~VLDlGcGtG~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~ 138 (391)
+..+...+...+.. .++.+|||+|||+|.++..+++. ...+|+|+|++ .|++.|+++++.+++.++++++++|+.+
T Consensus 48 ~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 127 (254)
T 2h00_A 48 YIHWVEDLIGHQDSDKSTLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKT 127 (254)
T ss_dssp HHHHHHHHHCCCCGGGCCCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTC
T ss_pred HHHHHHHHHhhccccCCCCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhh
Confidence 34444444433322 24679999999999999888776 23489999999 9999999999999998889999999776
Q ss_pred C---CCC----CcccEEEEccccccccCc------------chHHHHHHHHhccccCCeEEEcc
Q 016351 139 I---VLP----EKVDVIISEWMGYFLLRE------------SMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 139 ~---~~~----~~~D~Ivse~~~~~~~~e------------~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
. .++ ++||+|+|++.-+....+ .....++..+.++|+|||.+.+.
T Consensus 128 ~~~~~~~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG~l~~~ 191 (254)
T 2h00_A 128 LLMDALKEESEIIYDFCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFV 191 (254)
T ss_dssp SSTTTSTTCCSCCBSEEEECCCCC-------------------------CTTTTHHHHTHHHHH
T ss_pred hhhhhhhcccCCcccEEEECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecCCEEEEE
Confidence 2 233 479999998643221100 01224567788999999977644
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.34 E-value=2.8e-12 Score=122.41 Aligned_cols=113 Identities=21% Similarity=0.222 Sum_probs=89.1
Q ss_pred HHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCC-CeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcc
Q 016351 68 NSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGA-RKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKV 145 (391)
Q Consensus 68 ~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g~-~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~~ 145 (391)
+.+...+...++.+|||+|||+|.++..+++.+. .+|+++|+| .+++.|++++..+++. ++++.+|+.+.. +++|
T Consensus 186 ~~ll~~l~~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~--~~~~~~d~~~~~-~~~f 262 (343)
T 2pjd_A 186 QLLLSTLTPHTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVE--GEVFASNVFSEV-KGRF 262 (343)
T ss_dssp HHHHHHSCTTCCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTTCC--CEEEECSTTTTC-CSCE
T ss_pred HHHHHhcCcCCCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCC--CEEEEccccccc-cCCe
Confidence 3444444334567899999999999999999864 389999999 8999999999999886 677899987754 5799
Q ss_pred cEEEEcccccccc--CcchHHHHHHHHhccccCCeEEEcc
Q 016351 146 DVIISEWMGYFLL--RESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 146 D~Ivse~~~~~~~--~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
|+|++++..+... .......++..+.++|+|||.+++.
T Consensus 263 D~Iv~~~~~~~g~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 302 (343)
T 2pjd_A 263 DMIISNPPFHDGMQTSLDAAQTLIRGAVRHLNSGGELRIV 302 (343)
T ss_dssp EEEEECCCCCSSSHHHHHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred eEEEECCCcccCccCCHHHHHHHHHHHHHhCCCCcEEEEE
Confidence 9999976433211 1234678899999999999998864
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.33 E-value=7.8e-12 Score=113.91 Aligned_cols=107 Identities=26% Similarity=0.237 Sum_probs=86.9
Q ss_pred HHHhcCCCCCCCEEEEECCcccHHHHHHHHc-C-CCeEEEEech-HHHHHHHHHHHHc-CCCCcEEEEEcccccCCCC-C
Q 016351 69 SIFQNKHHFQGKTVLDVGTGSGILAIWSAQA-G-ARKVYAVEAT-KMSDHARTLVKAN-NLQDVVEVIEGSVEDIVLP-E 143 (391)
Q Consensus 69 ~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~-g-~~~V~avD~s-~~~~~a~~~~~~~-~~~~~v~~i~~d~~~~~~~-~ 143 (391)
.+...+...++.+|||+|||+|.++..+++. + ..+|+++|++ .+++.|+++++.+ + .++++++++|+.+.+++ +
T Consensus 87 ~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g-~~~v~~~~~d~~~~~~~~~ 165 (258)
T 2pwy_A 87 AMVTLLDLAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQ-VENVRFHLGKLEEAELEEA 165 (258)
T ss_dssp HHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCC-CCCEEEEESCGGGCCCCTT
T ss_pred HHHHHcCCCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcC-CCCEEEEECchhhcCCCCC
Confidence 4445555667899999999999999999988 4 4589999999 9999999999887 7 44599999999987555 7
Q ss_pred cccEEEEccccccccCcchHHHHHHHHhccccCCeEEEccc
Q 016351 144 KVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 144 ~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~ 184 (391)
+||+|++++. ....++..+.++|+|||.++...
T Consensus 166 ~~D~v~~~~~--------~~~~~l~~~~~~L~~gG~l~~~~ 198 (258)
T 2pwy_A 166 AYDGVALDLM--------EPWKVLEKAALALKPDRFLVAYL 198 (258)
T ss_dssp CEEEEEEESS--------CGGGGHHHHHHHEEEEEEEEEEE
T ss_pred CcCEEEECCc--------CHHHHHHHHHHhCCCCCEEEEEe
Confidence 8999998532 23356888889999999988643
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.33 E-value=2.7e-12 Score=115.97 Aligned_cols=102 Identities=20% Similarity=0.271 Sum_probs=84.4
Q ss_pred CCCCEEEEECCcccHHHHHHHHcC--CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccC-C-C----------
Q 016351 77 FQGKTVLDVGTGSGILAIWSAQAG--ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDI-V-L---------- 141 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~l~~~~a~~g--~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~-~-~---------- 141 (391)
.++.+|||||||+|..+..+++.. ..+|+++|++ .+++.|+++++.+++.++++++.+|+.+. + +
T Consensus 59 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~~~ 138 (239)
T 2hnk_A 59 SGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSWA 138 (239)
T ss_dssp HTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCGGG
T ss_pred hCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhccccccc
Confidence 356899999999999999999873 4589999999 89999999999999988899999998763 1 1
Q ss_pred -----C-CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEccc
Q 016351 142 -----P-EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 142 -----~-~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~ 184 (391)
. ++||+|+++.. ......++..+.++|+|||+++...
T Consensus 139 ~~f~~~~~~fD~I~~~~~------~~~~~~~l~~~~~~L~pgG~lv~~~ 181 (239)
T 2hnk_A 139 SDFAFGPSSIDLFFLDAD------KENYPNYYPLILKLLKPGGLLIADN 181 (239)
T ss_dssp TTTCCSTTCEEEEEECSC------GGGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred ccccCCCCCcCEEEEeCC------HHHHHHHHHHHHHHcCCCeEEEEEc
Confidence 2 68999998531 2245678899999999999998654
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=99.33 E-value=2.4e-12 Score=115.31 Aligned_cols=103 Identities=19% Similarity=0.199 Sum_probs=85.1
Q ss_pred CCCCEEEEECCcccHHHHHHHHc-C-CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccC--CCC-----Cccc
Q 016351 77 FQGKTVLDVGTGSGILAIWSAQA-G-ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDI--VLP-----EKVD 146 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~l~~~~a~~-g-~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~--~~~-----~~~D 146 (391)
.++++|||||||+|..++.+++. + ..+|+++|++ .+++.|+++++.+++.++++++++|+.+. .++ ++||
T Consensus 68 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~D 147 (229)
T 2avd_A 68 IQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFD 147 (229)
T ss_dssp TTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEE
T ss_pred cCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCcc
Confidence 45689999999999999999986 2 4589999999 99999999999999987899999998664 111 6899
Q ss_pred EEEEccccccccCcchHHHHHHHHhccccCCeEEEcccc
Q 016351 147 VIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 147 ~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~~ 185 (391)
+|+++.. ......++..+.++|+|||+++....
T Consensus 148 ~v~~d~~------~~~~~~~l~~~~~~L~pgG~lv~~~~ 180 (229)
T 2avd_A 148 VAVVDAD------KENCSAYYERCLQLLRPGGILAVLRV 180 (229)
T ss_dssp EEEECSC------STTHHHHHHHHHHHEEEEEEEEEECC
T ss_pred EEEECCC------HHHHHHHHHHHHHHcCCCeEEEEECC
Confidence 9998653 22356788889999999999987643
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.32 E-value=9.3e-12 Score=112.70 Aligned_cols=107 Identities=20% Similarity=0.097 Sum_probs=87.2
Q ss_pred HHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC-CCCccc
Q 016351 69 SIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV-LPEKVD 146 (391)
Q Consensus 69 ~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~-~~~~~D 146 (391)
.+...+...++.+|||+|||+|.++..+++. ..+|+++|++ .+++.|+++.+.+++.++++++.+|+.+.. ..+.||
T Consensus 82 ~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D 160 (248)
T 2yvl_A 82 YIALKLNLNKEKRVLEFGTGSGALLAVLSEV-AGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEVPEGIFH 160 (248)
T ss_dssp HHHHHTTCCTTCEEEEECCTTSHHHHHHHHH-SSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSCCCTTCBS
T ss_pred HHHHhcCCCCCCEEEEeCCCccHHHHHHHHh-CCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhcccCCCccc
Confidence 3444455567889999999999999999988 4589999999 999999999999998677999999998865 347899
Q ss_pred EEEEccccccccCcchHHHHHHHHhccccCCeEEEccc
Q 016351 147 VIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 147 ~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~ 184 (391)
+|+++.. ....++..+.++|+|||.++...
T Consensus 161 ~v~~~~~--------~~~~~l~~~~~~L~~gG~l~~~~ 190 (248)
T 2yvl_A 161 AAFVDVR--------EPWHYLEKVHKSLMEGAPVGFLL 190 (248)
T ss_dssp EEEECSS--------CGGGGHHHHHHHBCTTCEEEEEE
T ss_pred EEEECCc--------CHHHHHHHHHHHcCCCCEEEEEe
Confidence 9998532 22356777889999999988654
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.32 E-value=1.3e-12 Score=111.37 Aligned_cols=95 Identities=19% Similarity=0.218 Sum_probs=77.4
Q ss_pred CCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-CcccEEEEccc
Q 016351 76 HFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIISEWM 153 (391)
Q Consensus 76 ~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~-~~~D~Ivse~~ 153 (391)
..++.+|||+|||+|.++..+++.+. +|+|+|++ .+++.|+++ ..+++++.+| ++++ ++||+|++..+
T Consensus 15 ~~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~------~~~v~~~~~d---~~~~~~~~D~v~~~~~ 84 (170)
T 3i9f_A 15 EGKKGVIVDYGCGNGFYCKYLLEFAT-KLYCIDINVIALKEVKEK------FDSVITLSDP---KEIPDNSVDFILFANS 84 (170)
T ss_dssp SSCCEEEEEETCTTCTTHHHHHTTEE-EEEEECSCHHHHHHHHHH------CTTSEEESSG---GGSCTTCEEEEEEESC
T ss_pred cCCCCeEEEECCCCCHHHHHHHhhcC-eEEEEeCCHHHHHHHHHh------CCCcEEEeCC---CCCCCCceEEEEEccc
Confidence 34668999999999999999999876 89999999 899998887 2349999999 3333 78999998544
Q ss_pred cccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 154 GYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 154 ~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
.+.+ .....+++.+.++|+|||.++..
T Consensus 85 l~~~---~~~~~~l~~~~~~L~pgG~l~~~ 111 (170)
T 3i9f_A 85 FHDM---DDKQHVISEVKRILKDDGRVIII 111 (170)
T ss_dssp STTC---SCHHHHHHHHHHHEEEEEEEEEE
T ss_pred hhcc---cCHHHHHHHHHHhcCCCCEEEEE
Confidence 3333 35678899999999999999865
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.32 E-value=6e-12 Score=116.31 Aligned_cols=108 Identities=21% Similarity=0.166 Sum_probs=87.9
Q ss_pred HHHhcCCCCCCCEEEEECCcccHHHHHHHHc-C-CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcc
Q 016351 69 SIFQNKHHFQGKTVLDVGTGSGILAIWSAQA-G-ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKV 145 (391)
Q Consensus 69 ~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~-g-~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~~ 145 (391)
.+...+...++.+|||+|||+|.++..+++. + ..+|+++|++ .+++.|+++++.+++.++++++.+|+.+....++|
T Consensus 103 ~i~~~~~~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 182 (277)
T 1o54_A 103 FIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFDEKDV 182 (277)
T ss_dssp HHHHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCCSCCSE
T ss_pred HHHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHcccCCcc
Confidence 3444455567889999999999999999987 5 4589999999 99999999999998866799999999887323689
Q ss_pred cEEEEccccccccCcchHHHHHHHHhccccCCeEEEccc
Q 016351 146 DVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 146 D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~ 184 (391)
|+|++++. ....++..+.++|+|||.++...
T Consensus 183 D~V~~~~~--------~~~~~l~~~~~~L~pgG~l~~~~ 213 (277)
T 1o54_A 183 DALFLDVP--------DPWNYIDKCWEALKGGGRFATVC 213 (277)
T ss_dssp EEEEECCS--------CGGGTHHHHHHHEEEEEEEEEEE
T ss_pred CEEEECCc--------CHHHHHHHHHHHcCCCCEEEEEe
Confidence 99998542 22356778889999999988654
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.31 E-value=7.8e-12 Score=119.58 Aligned_cols=114 Identities=19% Similarity=0.184 Sum_probs=92.2
Q ss_pred HHhcCCCCC-CCEEEEECCcccHHHHHHHHcC-CCeEEEEechHHHHHHHHHHHHcCCCCcEEEEEcccccCC--CCCcc
Q 016351 70 IFQNKHHFQ-GKTVLDVGTGSGILAIWSAQAG-ARKVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVEDIV--LPEKV 145 (391)
Q Consensus 70 i~~~~~~~~-~~~VLDlGcGtG~l~~~~a~~g-~~~V~avD~s~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~--~~~~~ 145 (391)
+...+...+ +.+|||||||+|.++..+++.. ..+++++|+..+++.|++++...++.++|+++.+|+.+.. .++.|
T Consensus 170 ~l~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~ 249 (352)
T 3mcz_A 170 VVSELGVFARARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDLPTTRDAARKTIHAHDLGGRVEFFEKNLLDARNFEGGAA 249 (352)
T ss_dssp HHHTCGGGTTCCEEEEETCTTCHHHHHHHHHCTTCEEEEEECGGGHHHHHHHHHHTTCGGGEEEEECCTTCGGGGTTCCE
T ss_pred HHHhCCCcCCCCEEEEeCCCcCHHHHHHHHhCCCCeEEEEECHHHHHHHHHHHHhcCCCCceEEEeCCcccCcccCCCCc
Confidence 334444445 7899999999999999998873 3489999998889999999999998888999999999876 67789
Q ss_pred cEEEEccccccccCcchHHHHHHHHhccccCCeEEEccc
Q 016351 146 DVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 146 D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~ 184 (391)
|+|++..+.+.+..+ ....+++.+.+.|+|||.+++..
T Consensus 250 D~v~~~~vlh~~~~~-~~~~~l~~~~~~L~pgG~l~i~e 287 (352)
T 3mcz_A 250 DVVMLNDCLHYFDAR-EAREVIGHAAGLVKPGGALLILT 287 (352)
T ss_dssp EEEEEESCGGGSCHH-HHHHHHHHHHHTEEEEEEEEEEE
T ss_pred cEEEEecccccCCHH-HHHHHHHHHHHHcCCCCEEEEEE
Confidence 999985544444322 35788999999999999988653
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.31 E-value=6.3e-12 Score=128.96 Aligned_cols=115 Identities=15% Similarity=0.123 Sum_probs=86.6
Q ss_pred HHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCC--CeEEEEech-HHHHHHHHHHHHc------CCCCcEEEEEccc
Q 016351 66 YFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGA--RKVYAVEAT-KMSDHARTLVKAN------NLQDVVEVIEGSV 136 (391)
Q Consensus 66 ~~~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g~--~~V~avD~s-~~~~~a~~~~~~~------~~~~~v~~i~~d~ 136 (391)
..+.+...+...++.+|||||||+|.++..+++.+. .+|+|||++ .|++.|+++++.. ++. +|+++++|+
T Consensus 709 Rle~LLelL~~~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~-nVefiqGDa 787 (950)
T 3htx_A 709 RVEYALKHIRESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVK-SATLYDGSI 787 (950)
T ss_dssp HHHHHHHHHHHSCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCS-EEEEEESCT
T ss_pred HHHHHHHHhcccCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCC-ceEEEECch
Confidence 333344433334778999999999999999999873 489999999 9999998876642 443 599999999
Q ss_pred ccCCCC-CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 137 EDIVLP-EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 137 ~~~~~~-~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
.+++.+ ++||+|++..+...+.. .....++..+.++|+|| .+++.
T Consensus 788 ~dLp~~d~sFDlVV~~eVLeHL~d-p~l~~~L~eI~RvLKPG-~LIIS 833 (950)
T 3htx_A 788 LEFDSRLHDVDIGTCLEVIEHMEE-DQACEFGEKVLSLFHPK-LLIVS 833 (950)
T ss_dssp TSCCTTSCSCCEEEEESCGGGSCH-HHHHHHHHHHHHTTCCS-EEEEE
T ss_pred HhCCcccCCeeEEEEeCchhhCCh-HHHHHHHHHHHHHcCCC-EEEEE
Confidence 998776 89999999443333322 23456889999999999 55543
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.31 E-value=8.2e-12 Score=111.75 Aligned_cols=111 Identities=20% Similarity=0.230 Sum_probs=85.4
Q ss_pred HHHHHHHhc---CCCCCCCEEEEECCcccHHHHHHHHc-C-CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEccccc
Q 016351 65 AYFNSIFQN---KHHFQGKTVLDVGTGSGILAIWSAQA-G-ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVED 138 (391)
Q Consensus 65 ~~~~~i~~~---~~~~~~~~VLDlGcGtG~l~~~~a~~-g-~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~ 138 (391)
.+..+|... +...++.+|||+|||+|.++..+|+. | ..+|+|+|++ .|++.++++++..+ ++..+.+|...
T Consensus 61 klaa~i~~gl~~l~ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~~---ni~~V~~d~~~ 137 (233)
T 4df3_A 61 KLAAALLKGLIELPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDRR---NIFPILGDARF 137 (233)
T ss_dssp HHHHHHHTTCSCCCCCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTCT---TEEEEESCTTC
T ss_pred HHHHHHHhchhhcCCCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhhc---CeeEEEEeccC
Confidence 445566543 44678899999999999999999987 5 3589999999 99999988776542 38899988876
Q ss_pred CC----CCCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 139 IV----LPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 139 ~~----~~~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
.. ..+.+|+|+++... ......++.++.+.|||||.+++.
T Consensus 138 p~~~~~~~~~vDvVf~d~~~-----~~~~~~~l~~~~r~LKpGG~lvI~ 181 (233)
T 4df3_A 138 PEKYRHLVEGVDGLYADVAQ-----PEQAAIVVRNARFFLRDGGYMLMA 181 (233)
T ss_dssp GGGGTTTCCCEEEEEECCCC-----TTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ccccccccceEEEEEEeccC-----ChhHHHHHHHHHHhccCCCEEEEE
Confidence 42 22789999986421 124567889999999999998754
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=3.4e-11 Score=116.02 Aligned_cols=114 Identities=18% Similarity=0.207 Sum_probs=90.3
Q ss_pred HHHhcCCCCCCCEEEEECCcccHHHHHHHHcC-CCeEEEEechHHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccE
Q 016351 69 SIFQNKHHFQGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDV 147 (391)
Q Consensus 69 ~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g-~~~V~avD~s~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~~D~ 147 (391)
.+.......+..+|||||||+|.++..+++.. ..+++++|+..+++.|++++...++.++|+++.+|+.+ +.+..||+
T Consensus 193 ~l~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~l~~~v~~~~~d~~~-~~p~~~D~ 271 (369)
T 3gwz_A 193 QVAAAYDFSGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLERPPVAEEARELLTGRGLADRCEILPGDFFE-TIPDGADV 271 (369)
T ss_dssp HHHHHSCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTT-CCCSSCSE
T ss_pred HHHHhCCCccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcCHHHHHHHHHhhhhcCcCCceEEeccCCCC-CCCCCceE
Confidence 34444444566899999999999999998873 34899999977899999999999998889999999983 44568999
Q ss_pred EEEccccccccCcchHHHHHHHHhccccCCeEEEccc
Q 016351 148 IISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 148 Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~ 184 (391)
|++..+.+.+..+ ....+++.+++.|+|||.+++..
T Consensus 272 v~~~~vlh~~~d~-~~~~~L~~~~~~L~pgG~l~i~e 307 (369)
T 3gwz_A 272 YLIKHVLHDWDDD-DVVRILRRIATAMKPDSRLLVID 307 (369)
T ss_dssp EEEESCGGGSCHH-HHHHHHHHHHTTCCTTCEEEEEE
T ss_pred EEhhhhhccCCHH-HHHHHHHHHHHHcCCCCEEEEEE
Confidence 9985544443322 23478999999999999998654
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.30 E-value=7.1e-12 Score=115.77 Aligned_cols=107 Identities=19% Similarity=0.171 Sum_probs=83.2
Q ss_pred HHHhcCCCCCCCEEEEECCcccHHHHHHHHc--CCCeEEEEech-HHHHHHHHHHHHc-CCCCcEEEEEcccccCCCCCc
Q 016351 69 SIFQNKHHFQGKTVLDVGTGSGILAIWSAQA--GARKVYAVEAT-KMSDHARTLVKAN-NLQDVVEVIEGSVEDIVLPEK 144 (391)
Q Consensus 69 ~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~--g~~~V~avD~s-~~~~~a~~~~~~~-~~~~~v~~i~~d~~~~~~~~~ 144 (391)
.+...+...++.+|||+|||+|.++..+++. +..+|+++|++ .+++.|+++++.+ +.. +++++++|+.+....++
T Consensus 101 ~~~~~~~~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~~-~v~~~~~d~~~~~~~~~ 179 (275)
T 1yb2_A 101 YIIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIG-NVRTSRSDIADFISDQM 179 (275)
T ss_dssp -----CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCT-TEEEECSCTTTCCCSCC
T ss_pred HHHHHcCCCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCCC-cEEEEECchhccCcCCC
Confidence 3444455567789999999999999999987 23489999999 9999999999988 754 49999999988433378
Q ss_pred ccEEEEccccccccCcchHHHHHHHHhccccCCeEEEccc
Q 016351 145 VDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 145 ~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~ 184 (391)
||+|++++. ....++..+.++|+|||+++...
T Consensus 180 fD~Vi~~~~--------~~~~~l~~~~~~LkpgG~l~i~~ 211 (275)
T 1yb2_A 180 YDAVIADIP--------DPWNHVQKIASMMKPGSVATFYL 211 (275)
T ss_dssp EEEEEECCS--------CGGGSHHHHHHTEEEEEEEEEEE
T ss_pred ccEEEEcCc--------CHHHHHHHHHHHcCCCCEEEEEe
Confidence 999998432 23457888899999999988654
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.30 E-value=8.4e-12 Score=119.97 Aligned_cols=106 Identities=15% Similarity=0.119 Sum_probs=87.4
Q ss_pred CCCEEEEECCcccHHHHHHHHcC-CCeEEEEechHHHHHHHHHHHHcCCCCcEEEEEcccccCC--CCCcccEEEEcccc
Q 016351 78 QGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVEDIV--LPEKVDVIISEWMG 154 (391)
Q Consensus 78 ~~~~VLDlGcGtG~l~~~~a~~g-~~~V~avD~s~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~--~~~~~D~Ivse~~~ 154 (391)
...+|||||||+|.++..+++.. ..+++++|+..+++.|+++++..++.++|+++.+|+.+.. +++.||+|++..+.
T Consensus 179 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~p~~~D~v~~~~vl 258 (363)
T 3dp7_A 179 HPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDLPQQLEMMRKQTAGLSGSERIHGHGANLLDRDVPFPTGFDAVWMSQFL 258 (363)
T ss_dssp CCSEEEEESCTTCHHHHHHHHHSTTCEEEEEECHHHHHHHHHHHTTCTTGGGEEEEECCCCSSSCCCCCCCSEEEEESCS
T ss_pred CCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeCHHHHHHHHHHHHhcCcccceEEEEccccccCCCCCCCcCEEEEechh
Confidence 55899999999999999998863 3489999998899999999998888788999999999863 56889999985544
Q ss_pred ccccCcchHHHHHHHHhccccCCeEEEccc
Q 016351 155 YFLLRESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 155 ~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~ 184 (391)
+.+..+ ....+++++++.|+|||.+++..
T Consensus 259 h~~~~~-~~~~~l~~~~~~L~pgG~l~i~e 287 (363)
T 3dp7_A 259 DCFSEE-EVISILTRVAQSIGKDSKVYIME 287 (363)
T ss_dssp TTSCHH-HHHHHHHHHHHHCCTTCEEEEEE
T ss_pred hhCCHH-HHHHHHHHHHHhcCCCcEEEEEe
Confidence 444332 35678999999999999987644
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=99.30 E-value=7.2e-12 Score=118.05 Aligned_cols=112 Identities=17% Similarity=0.121 Sum_probs=88.1
Q ss_pred CCCCCCEEEEECCcccHHHHHHHHc--CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC-CCcccEEEE
Q 016351 75 HHFQGKTVLDVGTGSGILAIWSAQA--GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL-PEKVDVIIS 150 (391)
Q Consensus 75 ~~~~~~~VLDlGcGtG~l~~~~a~~--g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~-~~~~D~Ivs 150 (391)
...++.+|||+|||+|..+..+++. +..+|+|+|++ .+++.++++++.+++.+ ++++++|+.++.. +++||+|++
T Consensus 115 ~~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~~-v~~~~~D~~~~~~~~~~fD~Il~ 193 (315)
T 1ixk_A 115 DPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLN-VILFHSSSLHIGELNVEFDKILL 193 (315)
T ss_dssp CCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCS-EEEESSCGGGGGGGCCCEEEEEE
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCCe-EEEEECChhhcccccccCCEEEE
Confidence 3457789999999999999999886 23589999999 99999999999999865 9999999988753 468999999
Q ss_pred cccccccc---C-c---------------chHHHHHHHHhccccCCeEEEccccee
Q 016351 151 EWMGYFLL---R-E---------------SMFDSVICARDRWLKPTGVMYPSHARM 187 (391)
Q Consensus 151 e~~~~~~~---~-e---------------~~l~~~l~~~~~~L~~gG~ii~~~~~~ 187 (391)
++..+... . . .....++..+.++|||||+++.+.+++
T Consensus 194 d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs~ 249 (315)
T 1ixk_A 194 DAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSL 249 (315)
T ss_dssp ECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred eCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCCC
Confidence 75422111 0 0 012478888999999999998765543
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=99.30 E-value=3.2e-12 Score=115.09 Aligned_cols=103 Identities=15% Similarity=0.142 Sum_probs=84.7
Q ss_pred CCCEEEEECCcccHHHHHHHHcC--CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccC----CC-C--CcccE
Q 016351 78 QGKTVLDVGTGSGILAIWSAQAG--ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDI----VL-P--EKVDV 147 (391)
Q Consensus 78 ~~~~VLDlGcGtG~l~~~~a~~g--~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~----~~-~--~~~D~ 147 (391)
++++|||||||+|..++.+++.. ..+|+++|++ .+++.|+++++.+++.++|+++.+|+.+. .. . ++||+
T Consensus 72 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD~ 151 (232)
T 3cbg_A 72 GAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEFDL 151 (232)
T ss_dssp TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCEEE
T ss_pred CCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCcCE
Confidence 56799999999999999999872 3489999999 89999999999999988899999997653 11 1 68999
Q ss_pred EEEccccccccCcchHHHHHHHHhccccCCeEEEcccce
Q 016351 148 IISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHAR 186 (391)
Q Consensus 148 Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~~~ 186 (391)
|+++.. ......+++.+.++|+|||+++.....
T Consensus 152 V~~d~~------~~~~~~~l~~~~~~LkpgG~lv~~~~~ 184 (232)
T 3cbg_A 152 IFIDAD------KRNYPRYYEIGLNLLRRGGLMVIDNVL 184 (232)
T ss_dssp EEECSC------GGGHHHHHHHHHHTEEEEEEEEEECTT
T ss_pred EEECCC------HHHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence 998642 124567889999999999999876543
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=2e-11 Score=117.62 Aligned_cols=114 Identities=24% Similarity=0.196 Sum_probs=89.3
Q ss_pred HHhcCCCCCCCEEEEECCcccHHHHHHHHcC-CCeEEEEechHHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEE
Q 016351 70 IFQNKHHFQGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVI 148 (391)
Q Consensus 70 i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g-~~~V~avD~s~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~~D~I 148 (391)
+...+...++.+|||||||+|.++..+++.. ..+++++|+..+++.|++++..+++.++|+++.+|+.+ .++..||+|
T Consensus 174 ~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~~~D~v 252 (374)
T 1qzz_A 174 PADAYDWSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAERARRRFADAGLADRVTVAEGDFFK-PLPVTADVV 252 (374)
T ss_dssp HHHTSCCTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTS-CCSCCEEEE
T ss_pred HHHhCCCCCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeCHHHHHHHHHHHHhcCCCCceEEEeCCCCC-cCCCCCCEE
Confidence 3334444567899999999999999999874 34899999977899999999999998789999999976 445569999
Q ss_pred EEccccccccCcchHHHHHHHHhccccCCeEEEcccc
Q 016351 149 ISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 149 vse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~~ 185 (391)
++..+.+.+..+ ....+++.+.++|+|||.+++...
T Consensus 253 ~~~~vl~~~~~~-~~~~~l~~~~~~L~pgG~l~i~e~ 288 (374)
T 1qzz_A 253 LLSFVLLNWSDE-DALTILRGCVRALEPGGRLLVLDR 288 (374)
T ss_dssp EEESCGGGSCHH-HHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred EEeccccCCCHH-HHHHHHHHHHHhcCCCcEEEEEec
Confidence 985544433322 235789999999999998886544
|
| >2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=4.7e-12 Score=120.37 Aligned_cols=97 Identities=20% Similarity=0.239 Sum_probs=83.0
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEccccc
Q 016351 77 FQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMGY 155 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~~D~Ivse~~~~ 155 (391)
.++.+|||+|||+|.+++. ++ ++.+|+|+|+| .+++.|+++++.|++.++++++++|+.++. ++||+|++++..+
T Consensus 194 ~~~~~VLDlg~G~G~~~l~-a~-~~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~--~~fD~Vi~dpP~~ 269 (336)
T 2yx1_A 194 SLNDVVVDMFAGVGPFSIA-CK-NAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVD--VKGNRVIMNLPKF 269 (336)
T ss_dssp CTTCEEEETTCTTSHHHHH-TT-TSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCC--CCEEEEEECCTTT
T ss_pred CCCCEEEEccCccCHHHHh-cc-CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhc--CCCcEEEECCcHh
Confidence 3678999999999999999 87 67799999999 999999999999999777999999999876 7899999976432
Q ss_pred cccCcchHHHHHHHHhccccCCeEEEccc
Q 016351 156 FLLRESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 156 ~~~~e~~l~~~l~~~~~~L~~gG~ii~~~ 184 (391)
. ..++..+.++|+|||.++...
T Consensus 270 ~-------~~~l~~~~~~L~~gG~l~~~~ 291 (336)
T 2yx1_A 270 A-------HKFIDKALDIVEEGGVIHYYT 291 (336)
T ss_dssp G-------GGGHHHHHHHEEEEEEEEEEE
T ss_pred H-------HHHHHHHHHHcCCCCEEEEEE
Confidence 2 146777888999999887643
|
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.30 E-value=8.2e-12 Score=112.65 Aligned_cols=106 Identities=13% Similarity=0.195 Sum_probs=78.4
Q ss_pred CCCCEEEEECCcccHHHHHHHHcC-CCeEEEEech-HHHHHHHHHHHH------cCCCCcEEEEEccccc-CC--CC-Cc
Q 016351 77 FQGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEAT-KMSDHARTLVKA------NNLQDVVEVIEGSVED-IV--LP-EK 144 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~l~~~~a~~g-~~~V~avD~s-~~~~~a~~~~~~------~~~~~~v~~i~~d~~~-~~--~~-~~ 144 (391)
.++.+|||||||+|.++..+|+.. ...|+|||++ .|++.|+++++. .++.+ |+++++|+.+ ++ ++ +.
T Consensus 45 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~n-v~~~~~d~~~~l~~~~~~~~ 123 (235)
T 3ckk_A 45 QAQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQN-IACLRSNAMKHLPNFFYKGQ 123 (235)
T ss_dssp -CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTT-EEEEECCTTTCHHHHCCTTC
T ss_pred CCCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCe-EEEEECcHHHhhhhhCCCcC
Confidence 345789999999999999999873 4589999999 999999988764 45544 9999999987 44 43 78
Q ss_pred ccEEEEcccccccc--Cc---chHHHHHHHHhccccCCeEEEcc
Q 016351 145 VDVIISEWMGYFLL--RE---SMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 145 ~D~Ivse~~~~~~~--~e---~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
+|.|++........ +. -....++..+.++|+|||.+++.
T Consensus 124 ~D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~ 167 (235)
T 3ckk_A 124 LTKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTI 167 (235)
T ss_dssp EEEEEEESCC-----------CCCHHHHHHHHHHEEEEEEEEEE
T ss_pred eeEEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEE
Confidence 99998632211110 00 01246899999999999999864
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.30 E-value=4.6e-12 Score=113.47 Aligned_cols=89 Identities=20% Similarity=0.149 Sum_probs=73.9
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccc-cCCCC--CcccEEEEcc
Q 016351 77 FQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVE-DIVLP--EKVDVIISEW 152 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~-~~~~~--~~~D~Ivse~ 152 (391)
.++.+|||||||+|.++..+++.+. +|+|+|++ .+++.|+++ . .+++++++|+. .++++ ++||+|++..
T Consensus 47 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~-----~-~~~~~~~~d~~~~~~~~~~~~fD~v~~~~ 119 (226)
T 3m33_A 47 TPQTRVLEAGCGHGPDAARFGPQAA-RWAAYDFSPELLKLARAN-----A-PHADVYEWNGKGELPAGLGAPFGLIVSRR 119 (226)
T ss_dssp CTTCEEEEESCTTSHHHHHHGGGSS-EEEEEESCHHHHHHHHHH-----C-TTSEEEECCSCSSCCTTCCCCEEEEEEES
T ss_pred CCCCeEEEeCCCCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHh-----C-CCceEEEcchhhccCCcCCCCEEEEEeCC
Confidence 4678999999999999999999976 89999999 899999887 1 24899999994 45443 6899999851
Q ss_pred ccccccCcchHHHHHHHHhccccCCeEEE
Q 016351 153 MGYFLLRESMFDSVICARDRWLKPTGVMY 181 (391)
Q Consensus 153 ~~~~~~~e~~l~~~l~~~~~~L~~gG~ii 181 (391)
....++..+.++|+|||.++
T Consensus 120 ---------~~~~~l~~~~~~LkpgG~l~ 139 (226)
T 3m33_A 120 ---------GPTSVILRLPELAAPDAHFL 139 (226)
T ss_dssp ---------CCSGGGGGHHHHEEEEEEEE
T ss_pred ---------CHHHHHHHHHHHcCCCcEEE
Confidence 23456778889999999999
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* | Back alignment and structure |
|---|
Probab=99.30 E-value=3.2e-11 Score=108.09 Aligned_cols=100 Identities=20% Similarity=0.188 Sum_probs=74.9
Q ss_pred CCCCCEEEEECCcccHHHHHHHHc-C-CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC----CCCcccEE
Q 016351 76 HFQGKTVLDVGTGSGILAIWSAQA-G-ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV----LPEKVDVI 148 (391)
Q Consensus 76 ~~~~~~VLDlGcGtG~l~~~~a~~-g-~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~----~~~~~D~I 148 (391)
..++.+|||+|||+|.++..+++. + ..+|+|+|++ .|++.+.+.++.. .++.++.+|++... +.++||+|
T Consensus 74 l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r---~nv~~i~~Da~~~~~~~~~~~~~D~I 150 (232)
T 3id6_C 74 IRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRR---PNIFPLLADARFPQSYKSVVENVDVL 150 (232)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHC---TTEEEEECCTTCGGGTTTTCCCEEEE
T ss_pred CCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc---CCeEEEEcccccchhhhccccceEEE
Confidence 567899999999999999999886 3 4589999999 8876555555443 24999999988643 23789999
Q ss_pred EEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 149 ISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 149 vse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
+++... ......+...+.++|||||.++..
T Consensus 151 ~~d~a~-----~~~~~il~~~~~~~LkpGG~lvis 180 (232)
T 3id6_C 151 YVDIAQ-----PDQTDIAIYNAKFFLKVNGDMLLV 180 (232)
T ss_dssp EECCCC-----TTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred EecCCC-----hhHHHHHHHHHHHhCCCCeEEEEE
Confidence 997532 222334455666799999999866
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.30 E-value=1.2e-11 Score=114.32 Aligned_cols=109 Identities=28% Similarity=0.358 Sum_probs=87.3
Q ss_pred HHHHhcCCCCCCCEEEEECCcccHHHHHHHHc-C-CCeEEEEech-HHHHHHHHHHHHc-C-CCCcEEEEEcccccCCCC
Q 016351 68 NSIFQNKHHFQGKTVLDVGTGSGILAIWSAQA-G-ARKVYAVEAT-KMSDHARTLVKAN-N-LQDVVEVIEGSVEDIVLP 142 (391)
Q Consensus 68 ~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~-g-~~~V~avD~s-~~~~~a~~~~~~~-~-~~~~v~~i~~d~~~~~~~ 142 (391)
..+...+...++.+|||+|||+|.++..+++. + ..+|+++|++ .+++.|+++++.+ + +.++++++++|+.+..++
T Consensus 89 ~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~~~~ 168 (280)
T 1i9g_A 89 AQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSELP 168 (280)
T ss_dssp HHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCCC
T ss_pred HHHHHHcCCCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhcCCC
Confidence 34445555667889999999999999999985 3 4589999999 9999999999887 5 445699999999987654
Q ss_pred -CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEccc
Q 016351 143 -EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 143 -~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~ 184 (391)
++||+|+++.. ....++..+.++|+|||.++...
T Consensus 169 ~~~~D~v~~~~~--------~~~~~l~~~~~~L~pgG~l~~~~ 203 (280)
T 1i9g_A 169 DGSVDRAVLDML--------APWEVLDAVSRLLVAGGVLMVYV 203 (280)
T ss_dssp TTCEEEEEEESS--------CGGGGHHHHHHHEEEEEEEEEEE
T ss_pred CCceeEEEECCc--------CHHHHHHHHHHhCCCCCEEEEEe
Confidence 78999998542 22356888899999999988643
|
| >1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=4.5e-12 Score=122.70 Aligned_cols=107 Identities=22% Similarity=0.303 Sum_probs=87.7
Q ss_pred CCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC-----CCcccEEEEc
Q 016351 78 QGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL-----PEKVDVIISE 151 (391)
Q Consensus 78 ~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~-----~~~~D~Ivse 151 (391)
++.+|||+|||+|.+++.+++. +.+|+++|++ .+++.|+++++.|++.+ ++++++|+.++.. .++||+|+++
T Consensus 209 ~~~~VLDlg~G~G~~~~~la~~-~~~v~~vD~s~~~~~~a~~n~~~n~~~~-~~~~~~d~~~~~~~~~~~~~~fD~Ii~d 286 (382)
T 1wxx_A 209 RGERALDVFSYAGGFALHLALG-FREVVAVDSSAEALRRAEENARLNGLGN-VRVLEANAFDLLRRLEKEGERFDLVVLD 286 (382)
T ss_dssp CEEEEEEETCTTTHHHHHHHHH-EEEEEEEESCHHHHHHHHHHHHHTTCTT-EEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCCeEEEeeeccCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCCCC-ceEEECCHHHHHHHHHhcCCCeeEEEEC
Confidence 6789999999999999999988 5689999999 99999999999999987 9999999987532 4689999998
Q ss_pred cccccccCc------chHHHHHHHHhccccCCeEEEcccce
Q 016351 152 WMGYFLLRE------SMFDSVICARDRWLKPTGVMYPSHAR 186 (391)
Q Consensus 152 ~~~~~~~~e------~~l~~~l~~~~~~L~~gG~ii~~~~~ 186 (391)
+..+..... .....++..+.++|+|||+++.+.++
T Consensus 287 pP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 327 (382)
T 1wxx_A 287 PPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCS 327 (382)
T ss_dssp CCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 753222111 23456788889999999999876543
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.29 E-value=1.2e-11 Score=117.49 Aligned_cols=105 Identities=23% Similarity=0.283 Sum_probs=80.2
Q ss_pred HHhcCCCCCCCEEEEECCcccHHHHHHHHc-CC-CeEEEEech-HHHHHHHHHHHHc-------C---CCCcEEEEEccc
Q 016351 70 IFQNKHHFQGKTVLDVGTGSGILAIWSAQA-GA-RKVYAVEAT-KMSDHARTLVKAN-------N---LQDVVEVIEGSV 136 (391)
Q Consensus 70 i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~-g~-~~V~avD~s-~~~~~a~~~~~~~-------~---~~~~v~~i~~d~ 136 (391)
+...+...++.+|||+|||+|.++..+++. |. .+|+++|++ .+++.|+++++.. + +.++++++.+|+
T Consensus 97 ~l~~l~~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~d~ 176 (336)
T 2b25_A 97 ILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDI 176 (336)
T ss_dssp HHHHHTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCT
T ss_pred HHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEECCh
Confidence 333344567899999999999999999987 65 689999999 8999999998853 2 234699999999
Q ss_pred ccC--CCC-CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEc
Q 016351 137 EDI--VLP-EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 137 ~~~--~~~-~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~ 182 (391)
.+. .++ ++||+|+++.... ..++..+.++|+|||.++.
T Consensus 177 ~~~~~~~~~~~fD~V~~~~~~~--------~~~l~~~~~~LkpgG~lv~ 217 (336)
T 2b25_A 177 SGATEDIKSLTFDAVALDMLNP--------HVTLPVFYPHLKHGGVCAV 217 (336)
T ss_dssp TCCC-------EEEEEECSSST--------TTTHHHHGGGEEEEEEEEE
T ss_pred HHcccccCCCCeeEEEECCCCH--------HHHHHHHHHhcCCCcEEEE
Confidence 886 333 5799999864321 2267888999999999883
|
| >4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.29 E-value=6e-12 Score=121.82 Aligned_cols=105 Identities=18% Similarity=0.175 Sum_probs=83.6
Q ss_pred CCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC--CCCcccEEEEcccc
Q 016351 78 QGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV--LPEKVDVIISEWMG 154 (391)
Q Consensus 78 ~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~--~~~~~D~Ivse~~~ 154 (391)
++++|||+|||+|.+++.+++.|+. |+++|+| .+++.|+++++.|++.+ ++.++|+.++. ..++||+|++++..
T Consensus 214 ~g~~VLDlg~GtG~~sl~~a~~ga~-V~avDis~~al~~a~~n~~~ng~~~--~~~~~D~~~~l~~~~~~fD~Ii~dpP~ 290 (393)
T 4dmg_A 214 PGERVLDVYSYVGGFALRAARKGAY-ALAVDKDLEALGVLDQAALRLGLRV--DIRHGEALPTLRGLEGPFHHVLLDPPT 290 (393)
T ss_dssp TTCEEEEESCTTTHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHHHTCCC--EEEESCHHHHHHTCCCCEEEEEECCCC
T ss_pred CCCeEEEcccchhHHHHHHHHcCCe-EEEEECCHHHHHHHHHHHHHhCCCC--cEEEccHHHHHHHhcCCCCEEEECCCc
Confidence 4889999999999999999999885 9999999 99999999999999974 56699988752 23459999998743
Q ss_pred ccccC------cchHHHHHHHHhccccCCeEEEcccc
Q 016351 155 YFLLR------ESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 155 ~~~~~------e~~l~~~l~~~~~~L~~gG~ii~~~~ 185 (391)
+.... ......++..+.++|+|||.++...+
T Consensus 291 f~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~ 327 (393)
T 4dmg_A 291 LVKRPEELPAMKRHLVDLVREALRLLAEEGFLWLSSC 327 (393)
T ss_dssp CCSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 22111 12345678888999999999985544
|
| >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A | Back alignment and structure |
|---|
Probab=99.29 E-value=1e-11 Score=117.72 Aligned_cols=110 Identities=16% Similarity=0.151 Sum_probs=84.8
Q ss_pred CCCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHc--CC-CCcEEEEEcccccC--CC-CCcccEE
Q 016351 77 FQGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKAN--NL-QDVVEVIEGSVEDI--VL-PEKVDVI 148 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~--~~-~~~v~~i~~d~~~~--~~-~~~~D~I 148 (391)
.++++|||||||+|.++..+++. +..+|++||++ .+++.|++++... ++ ..+++++.+|+.++ .. .++||+|
T Consensus 119 ~~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fDlI 198 (334)
T 1xj5_A 119 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAV 198 (334)
T ss_dssp SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEE
T ss_pred CCCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCccEE
Confidence 35689999999999999999987 34589999999 9999999987652 44 34699999998875 22 3789999
Q ss_pred EEccccccccCcc-hHHHHHHHHhccccCCeEEEcccce
Q 016351 149 ISEWMGYFLLRES-MFDSVICARDRWLKPTGVMYPSHAR 186 (391)
Q Consensus 149 vse~~~~~~~~e~-~l~~~l~~~~~~L~~gG~ii~~~~~ 186 (391)
+++........+. ....++..+.++|+|||+++.....
T Consensus 199 i~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~ 237 (334)
T 1xj5_A 199 IVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQAES 237 (334)
T ss_dssp EECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEECCC
T ss_pred EECCCCccCcchhhhHHHHHHHHHHhcCCCcEEEEecCC
Confidence 9976432221121 1367899999999999999976433
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=1.3e-11 Score=111.08 Aligned_cols=105 Identities=24% Similarity=0.251 Sum_probs=80.4
Q ss_pred HHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC--Ccc
Q 016351 69 SIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP--EKV 145 (391)
Q Consensus 69 ~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~--~~~ 145 (391)
.+.+.+...++.+|||||||+|.++..+++.+..+|+++|++ .+++.|+++++.+++.+ ++++.+|.. ..++ .+|
T Consensus 82 ~~~~~l~~~~~~~vLdiG~G~G~~~~~la~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~-v~~~~~d~~-~~~~~~~~f 159 (235)
T 1jg1_A 82 IMLEIANLKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGVKN-VHVILGDGS-KGFPPKAPY 159 (235)
T ss_dssp HHHHHHTCCTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTCCS-EEEEESCGG-GCCGGGCCE
T ss_pred HHHHhcCCCCCCEEEEEeCCcCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCC-cEEEECCcc-cCCCCCCCc
Confidence 344444456778999999999999999998752589999999 99999999999999876 999999973 2333 469
Q ss_pred cEEEEccccccccCcchHHHHHHHHhccccCCeEEEccc
Q 016351 146 DVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 146 D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~ 184 (391)
|+|++......+ .+.+.+.|+|||+++...
T Consensus 160 D~Ii~~~~~~~~---------~~~~~~~L~pgG~lvi~~ 189 (235)
T 1jg1_A 160 DVIIVTAGAPKI---------PEPLIEQLKIGGKLIIPV 189 (235)
T ss_dssp EEEEECSBBSSC---------CHHHHHTEEEEEEEEEEE
T ss_pred cEEEECCcHHHH---------HHHHHHhcCCCcEEEEEE
Confidence 999985432211 235678999999987553
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=3e-11 Score=107.92 Aligned_cols=100 Identities=26% Similarity=0.275 Sum_probs=79.1
Q ss_pred CCCCCEEEEECCcccHHHHHHHHc-CC-CeEEEEech-HHHHHHHHHHHHcCC----CCcEEEEEcccccCCCC-CcccE
Q 016351 76 HFQGKTVLDVGTGSGILAIWSAQA-GA-RKVYAVEAT-KMSDHARTLVKANNL----QDVVEVIEGSVEDIVLP-EKVDV 147 (391)
Q Consensus 76 ~~~~~~VLDlGcGtG~l~~~~a~~-g~-~~V~avD~s-~~~~~a~~~~~~~~~----~~~v~~i~~d~~~~~~~-~~~D~ 147 (391)
..++.+|||||||+|.++..+++. +. .+|+++|++ .+++.|++++..+++ .++++++.+|+...... ++||+
T Consensus 75 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~ 154 (226)
T 1i1n_A 75 LHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDA 154 (226)
T ss_dssp SCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCEEE
T ss_pred CCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCcccCCCcCE
Confidence 356789999999999999999887 43 389999999 999999999988764 34599999999865433 68999
Q ss_pred EEEccccccccCcchHHHHHHHHhccccCCeEEEccc
Q 016351 148 IISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 148 Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~ 184 (391)
|++..... .++..+.++|+|||+++...
T Consensus 155 i~~~~~~~---------~~~~~~~~~LkpgG~lv~~~ 182 (226)
T 1i1n_A 155 IHVGAAAP---------VVPQALIDQLKPGGRLILPV 182 (226)
T ss_dssp EEECSBBS---------SCCHHHHHTEEEEEEEEEEE
T ss_pred EEECCchH---------HHHHHHHHhcCCCcEEEEEE
Confidence 99854321 12356778999999988653
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=2.3e-11 Score=115.43 Aligned_cols=106 Identities=19% Similarity=0.048 Sum_probs=86.5
Q ss_pred CCCEEEEECCcccHHHHHHHHcC-CCeEEEEechHHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEcccccc
Q 016351 78 QGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMGYF 156 (391)
Q Consensus 78 ~~~~VLDlGcGtG~l~~~~a~~g-~~~V~avD~s~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~~D~Ivse~~~~~ 156 (391)
+..+|||||||+|.++..+++.. ..+++++|+..+++.|++++...++.++|+++.+|+.+ +.|..||+|++..+.+.
T Consensus 169 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~p~~~D~v~~~~vlh~ 247 (332)
T 3i53_A 169 ALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDLQGPASAAHRRFLDTGLSGRAQVVVGSFFD-PLPAGAGGYVLSAVLHD 247 (332)
T ss_dssp GGSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTS-CCCCSCSEEEEESCGGG
T ss_pred CCCEEEEeCCChhHHHHHHHHHCCCCeEEEecCHHHHHHHHHhhhhcCcCcCeEEecCCCCC-CCCCCCcEEEEehhhcc
Confidence 45899999999999999988863 34899999987899999999999998889999999973 44558999998554444
Q ss_pred ccCcchHHHHHHHHhccccCCeEEEcccc
Q 016351 157 LLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 157 ~~~e~~l~~~l~~~~~~L~~gG~ii~~~~ 185 (391)
+..+ ....+++++++.|+|||.+++...
T Consensus 248 ~~~~-~~~~~l~~~~~~L~pgG~l~i~e~ 275 (332)
T 3i53_A 248 WDDL-SAVAILRRCAEAAGSGGVVLVIEA 275 (332)
T ss_dssp SCHH-HHHHHHHHHHHHHTTTCEEEEEEC
T ss_pred CCHH-HHHHHHHHHHHhcCCCCEEEEEee
Confidence 4332 357789999999999999986543
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=1.2e-11 Score=115.96 Aligned_cols=108 Identities=16% Similarity=0.095 Sum_probs=80.8
Q ss_pred CCCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHH---cCCCCcEEEEEcccccCC---CCCcccEE
Q 016351 77 FQGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKA---NNLQDVVEVIEGSVEDIV---LPEKVDVI 148 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~---~~~~~~v~~i~~d~~~~~---~~~~~D~I 148 (391)
.++++|||||||+|.++..+++. +..+|++||++ .+++.|++++.. .....+++++.+|+.++. ..++||+|
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDvI 173 (304)
T 3bwc_A 94 PKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDVV 173 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEEE
T ss_pred CCCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeEE
Confidence 35689999999999999999987 45689999999 899999987742 222346999999998763 24789999
Q ss_pred EEccccccccCcch-HHHHHHHHhccccCCeEEEccc
Q 016351 149 ISEWMGYFLLRESM-FDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 149 vse~~~~~~~~e~~-l~~~l~~~~~~L~~gG~ii~~~ 184 (391)
+++........... ...++..+.++|+|||+++...
T Consensus 174 i~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 210 (304)
T 3bwc_A 174 IIDTTDPAGPASKLFGEAFYKDVLRILKPDGICCNQG 210 (304)
T ss_dssp EEECC---------CCHHHHHHHHHHEEEEEEEEEEE
T ss_pred EECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEec
Confidence 99765433221111 1578899999999999998653
|
| >1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=1.4e-11 Score=113.30 Aligned_cols=107 Identities=21% Similarity=0.291 Sum_probs=79.2
Q ss_pred CCCEEEEECCcccH----HHHHHHHc-C----CCeEEEEech-HHHHHHHHHHHH-----------------------cC
Q 016351 78 QGKTVLDVGTGSGI----LAIWSAQA-G----ARKVYAVEAT-KMSDHARTLVKA-----------------------NN 124 (391)
Q Consensus 78 ~~~~VLDlGcGtG~----l~~~~a~~-g----~~~V~avD~s-~~~~~a~~~~~~-----------------------~~ 124 (391)
++.+|||+|||||. +++.+++. + ..+|+|+|+| .|++.|++.+.. .+
T Consensus 105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~ 184 (274)
T 1af7_A 105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG 184 (274)
T ss_dssp SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence 35789999999998 67777765 4 1279999999 999999986410 11
Q ss_pred -------CCCcEEEEEcccccCCCC--CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcccc
Q 016351 125 -------LQDVVEVIEGSVEDIVLP--EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 125 -------~~~~v~~i~~d~~~~~~~--~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~~ 185 (391)
+.++|+|.++|+.+.+++ ++||+|+|..+...+. ......++..+.+.|+|||.+++...
T Consensus 185 ~~~v~~~lr~~V~F~~~dl~~~~~~~~~~fDlI~crnvliyf~-~~~~~~vl~~~~~~L~pgG~L~lg~s 253 (274)
T 1af7_A 185 LVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFD-KTTQEDILRRFVPLLKPDGLLFAGHS 253 (274)
T ss_dssp EEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSC-HHHHHHHHHHHGGGEEEEEEEEECTT
T ss_pred ceeechhhcccCeEEecccCCCCCCcCCCeeEEEECCchHhCC-HHHHHHHHHHHHHHhCCCcEEEEEec
Confidence 113599999999885443 7899999954333332 23457889999999999999986543
|
| >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.28 E-value=3.8e-12 Score=117.64 Aligned_cols=105 Identities=15% Similarity=0.102 Sum_probs=74.8
Q ss_pred HHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEE-EcccccCC---C
Q 016351 67 FNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVI-EGSVEDIV---L 141 (391)
Q Consensus 67 ~~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i-~~d~~~~~---~ 141 (391)
.+++.......++.+|||||||||.++..+++.|+.+|+|||++ .|++.+.+. + .++... ..+++.+. +
T Consensus 74 ~~~l~~~~~~~~g~~vLDiGcGTG~~t~~L~~~ga~~V~aVDvs~~mL~~a~r~---~---~rv~~~~~~ni~~l~~~~l 147 (291)
T 3hp7_A 74 EKALAVFNLSVEDMITIDIGASTGGFTDVMLQNGAKLVYAVDVGTNQLVWKLRQ---D---DRVRSMEQYNFRYAEPVDF 147 (291)
T ss_dssp HHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSSSCSCHHHHT---C---TTEEEECSCCGGGCCGGGC
T ss_pred HHHHHhcCCCccccEEEecCCCccHHHHHHHhCCCCEEEEEECCHHHHHHHHHh---C---cccceecccCceecchhhC
Confidence 34444443345678999999999999999999998899999999 898875432 1 124333 34555543 3
Q ss_pred CC-cccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 142 PE-KVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 142 ~~-~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
+. .||+|+++.... .+..++.++.++|+|||.++..
T Consensus 148 ~~~~fD~v~~d~sf~------sl~~vL~e~~rvLkpGG~lv~l 184 (291)
T 3hp7_A 148 TEGLPSFASIDVSFI------SLNLILPALAKILVDGGQVVAL 184 (291)
T ss_dssp TTCCCSEEEECCSSS------CGGGTHHHHHHHSCTTCEEEEE
T ss_pred CCCCCCEEEEEeeHh------hHHHHHHHHHHHcCcCCEEEEE
Confidence 43 499999975322 2456788999999999998763
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=4.3e-11 Score=114.76 Aligned_cols=114 Identities=12% Similarity=0.060 Sum_probs=90.4
Q ss_pred HHHhcCCCCCCCEEEEECCcccHHHHHHHHcC-CCeEEEEechHHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccE
Q 016351 69 SIFQNKHHFQGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDV 147 (391)
Q Consensus 69 ~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g-~~~V~avD~s~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~~D~ 147 (391)
.+...+...++.+|||||||+|.++..+++.. ..+++++|+..+++.|+++++.+++.++++++.+|+.+.++++ .|+
T Consensus 181 ~l~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~-~D~ 259 (359)
T 1x19_A 181 LLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKESYPE-ADA 259 (359)
T ss_dssp HHHHHCCCTTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEECGGGHHHHHHHHHHTTCTTTEEEEECCTTTSCCCC-CSE
T ss_pred HHHHhcCCCCCCEEEEECCcccHHHHHHHHHCCCCeEEEEecHHHHHHHHHHHHhcCCCCCEEEEeCccccCCCCC-CCE
Confidence 34444445567899999999999999999873 3489999997789999999999999888999999999876554 499
Q ss_pred EEEccccccccCcchHHHHHHHHhccccCCeEEEccc
Q 016351 148 IISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 148 Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~ 184 (391)
|++..+.+.+.. .....+++.+.+.|+|||.+++..
T Consensus 260 v~~~~vlh~~~d-~~~~~~l~~~~~~L~pgG~l~i~e 295 (359)
T 1x19_A 260 VLFCRILYSANE-QLSTIMCKKAFDAMRSGGRLLILD 295 (359)
T ss_dssp EEEESCGGGSCH-HHHHHHHHHHHTTCCTTCEEEEEE
T ss_pred EEEechhccCCH-HHHHHHHHHHHHhcCCCCEEEEEe
Confidence 998554443332 236788999999999999987543
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=3.9e-12 Score=117.92 Aligned_cols=106 Identities=18% Similarity=0.144 Sum_probs=81.7
Q ss_pred CCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHc--CC--------CCcEEEEEcccccCC-CCCcc
Q 016351 78 QGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKAN--NL--------QDVVEVIEGSVEDIV-LPEKV 145 (391)
Q Consensus 78 ~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~--~~--------~~~v~~i~~d~~~~~-~~~~~ 145 (391)
++++|||||||+|.++..+++.+..+|++||++ .+++.|++++ .. ++ ..+++++.+|..+.. .+++|
T Consensus 75 ~~~~VLdiG~G~G~~~~~l~~~~~~~v~~vDid~~~i~~ar~~~-~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~~~~f 153 (281)
T 1mjf_A 75 KPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLI-KIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRGF 153 (281)
T ss_dssp CCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHT-CTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCCE
T ss_pred CCCeEEEEcCCcCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH-hhccccccccccCCCCcEEEEECchHHHhcccCCe
Confidence 568999999999999999998876799999999 8999999987 43 33 356999999987641 14789
Q ss_pred cEEEEccccccccCcch-HHHHHHHHhccccCCeEEEccc
Q 016351 146 DVIISEWMGYFLLRESM-FDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 146 D~Ivse~~~~~~~~e~~-l~~~l~~~~~~L~~gG~ii~~~ 184 (391)
|+|+++........... ...+++.+.++|+|||+++...
T Consensus 154 D~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~ 193 (281)
T 1mjf_A 154 DVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQA 193 (281)
T ss_dssp EEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred eEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 99999875432211111 2678899999999999998763
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=2.6e-12 Score=125.83 Aligned_cols=112 Identities=16% Similarity=0.229 Sum_probs=81.9
Q ss_pred HHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEE-EEEcccccCCC
Q 016351 64 DAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVE-VIEGSVEDIVL 141 (391)
Q Consensus 64 ~~~~~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~-~i~~d~~~~~~ 141 (391)
..+.+.+...+...++.+|||||||+|.++..+++.|. +|+|+|+| .+++.|+++ ++..... +...+...+++
T Consensus 93 ~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~g~-~v~gvD~s~~~~~~a~~~----~~~~~~~~~~~~~~~~l~~ 167 (416)
T 4e2x_A 93 AMLARDFLATELTGPDPFIVEIGCNDGIMLRTIQEAGV-RHLGFEPSSGVAAKAREK----GIRVRTDFFEKATADDVRR 167 (416)
T ss_dssp HHHHHHHHHTTTCSSSCEEEEETCTTTTTHHHHHHTTC-EEEEECCCHHHHHHHHTT----TCCEECSCCSHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCEEEEecCCCCHHHHHHHHcCC-cEEEECCCHHHHHHHHHc----CCCcceeeechhhHhhccc
Confidence 34455566666556778999999999999999999987 89999999 899888765 3332111 22234444443
Q ss_pred C-CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 142 P-EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 142 ~-~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
+ ++||+|++..+.+++ .++..++..+.++|+|||++++.
T Consensus 168 ~~~~fD~I~~~~vl~h~---~d~~~~l~~~~r~LkpgG~l~i~ 207 (416)
T 4e2x_A 168 TEGPANVIYAANTLCHI---PYVQSVLEGVDALLAPDGVFVFE 207 (416)
T ss_dssp HHCCEEEEEEESCGGGC---TTHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCCCEEEEEECChHHhc---CCHHHHHHHHHHHcCCCeEEEEE
Confidence 3 789999995433333 36788999999999999999865
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.27 E-value=9.5e-12 Score=114.91 Aligned_cols=108 Identities=17% Similarity=0.142 Sum_probs=84.2
Q ss_pred CCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHH--cCC-CCcEEEEEcccccC-C-CCCcccEEEE
Q 016351 78 QGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKA--NNL-QDVVEVIEGSVEDI-V-LPEKVDVIIS 150 (391)
Q Consensus 78 ~~~~VLDlGcGtG~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~--~~~-~~~v~~i~~d~~~~-~-~~~~~D~Ivs 150 (391)
++++|||||||+|.++..+++. +..+|++||++ .+++.|++++.. +++ ..+++++.+|..+. . ..++||+|++
T Consensus 75 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~Ii~ 154 (275)
T 1iy9_A 75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIMV 154 (275)
T ss_dssp SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEEE
T ss_pred CCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEEEE
Confidence 5689999999999999999988 66799999999 999999998754 244 35799999998774 2 2478999999
Q ss_pred ccccccccCcc-hHHHHHHHHhccccCCeEEEcccc
Q 016351 151 EWMGYFLLRES-MFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 151 e~~~~~~~~e~-~l~~~l~~~~~~L~~gG~ii~~~~ 185 (391)
++......... ....+++.+.++|+|||+++....
T Consensus 155 d~~~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~~~ 190 (275)
T 1iy9_A 155 DSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTD 190 (275)
T ss_dssp SCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECC
T ss_pred CCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcC
Confidence 87543221111 125688899999999999987643
|
| >2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=5.6e-12 Score=119.00 Aligned_cols=107 Identities=20% Similarity=0.205 Sum_probs=83.5
Q ss_pred CCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHH--cCC-CCcEEEEEcccccCC--CCCcccEEEE
Q 016351 78 QGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKA--NNL-QDVVEVIEGSVEDIV--LPEKVDVIIS 150 (391)
Q Consensus 78 ~~~~VLDlGcGtG~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~--~~~-~~~v~~i~~d~~~~~--~~~~~D~Ivs 150 (391)
++++|||||||+|.++..+++. +..+|+++|++ .+++.|++++.. +++ ..+++++.+|..+.. .+++||+|++
T Consensus 116 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDvIi~ 195 (321)
T 2pt6_A 116 EPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVIIV 195 (321)
T ss_dssp SCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEEE
T ss_pred CCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceEEEE
Confidence 4589999999999999999987 45689999999 999999998765 334 356999999987742 2478999999
Q ss_pred ccccccccCcchH-HHHHHHHhccccCCeEEEccc
Q 016351 151 EWMGYFLLRESMF-DSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 151 e~~~~~~~~e~~l-~~~l~~~~~~L~~gG~ii~~~ 184 (391)
+............ ..+++.+.++|+|||+++...
T Consensus 196 d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 230 (321)
T 2pt6_A 196 DSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQC 230 (321)
T ss_dssp ECCCSSSGGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCcCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 7643322112111 678999999999999998753
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=3.8e-11 Score=115.08 Aligned_cols=112 Identities=26% Similarity=0.294 Sum_probs=87.8
Q ss_pred hcCCCCCCCEEEEECCcccHHHHHHHHcC-CCeEEEEechHHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEE
Q 016351 72 QNKHHFQGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIIS 150 (391)
Q Consensus 72 ~~~~~~~~~~VLDlGcGtG~l~~~~a~~g-~~~V~avD~s~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~~D~Ivs 150 (391)
..+...++.+|||||||+|.++..+++.+ ..+++++|+..+++.|+++++.+++.++++++.+|+.+ .++..||+|++
T Consensus 177 ~~~~~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~~~D~v~~ 255 (360)
T 1tw3_A 177 AAYDWTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEMAGTVDTARSYLKDEGLSDRVDVVEGDFFE-PLPRKADAIIL 255 (360)
T ss_dssp HHSCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECTTHHHHHHHHHHHTTCTTTEEEEECCTTS-CCSSCEEEEEE
T ss_pred HhCCCccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecCHHHHHHHHHHHHhcCCCCceEEEeCCCCC-CCCCCccEEEE
Confidence 33444567899999999999999998874 34799999877899999999999988789999999976 34556999998
Q ss_pred ccccccccCcchHHHHHHHHhccccCCeEEEcccc
Q 016351 151 EWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 151 e~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~~ 185 (391)
..+.+.+..+ ....+++.+.++|+|||.+++...
T Consensus 256 ~~vl~~~~~~-~~~~~l~~~~~~L~pgG~l~i~e~ 289 (360)
T 1tw3_A 256 SFVLLNWPDH-DAVRILTRCAEALEPGGRILIHER 289 (360)
T ss_dssp ESCGGGSCHH-HHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred cccccCCCHH-HHHHHHHHHHHhcCCCcEEEEEEE
Confidence 5544333222 235789999999999999886543
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.27 E-value=2.1e-11 Score=109.02 Aligned_cols=100 Identities=18% Similarity=0.151 Sum_probs=79.4
Q ss_pred CCCCCEEEEECCcccHHHHHHHHcCC------CeEEEEech-HHHHHHHHHHHHcCC----CCcEEEEEcccccCC----
Q 016351 76 HFQGKTVLDVGTGSGILAIWSAQAGA------RKVYAVEAT-KMSDHARTLVKANNL----QDVVEVIEGSVEDIV---- 140 (391)
Q Consensus 76 ~~~~~~VLDlGcGtG~l~~~~a~~g~------~~V~avD~s-~~~~~a~~~~~~~~~----~~~v~~i~~d~~~~~---- 140 (391)
..++.+|||||||+|.++..+++... .+|+++|++ .+++.|+++++.+++ .++++++.+|+.+..
T Consensus 78 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 157 (227)
T 2pbf_A 78 LKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEEK 157 (227)
T ss_dssp SCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHHH
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhcccccC
Confidence 35678999999999999999998743 489999999 999999999998873 345999999998853
Q ss_pred CC-CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEccc
Q 016351 141 LP-EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 141 ~~-~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~ 184 (391)
.. ++||+|++...... ++..+.++|+|||+++...
T Consensus 158 ~~~~~fD~I~~~~~~~~---------~~~~~~~~LkpgG~lv~~~ 193 (227)
T 2pbf_A 158 KELGLFDAIHVGASASE---------LPEILVDLLAENGKLIIPI 193 (227)
T ss_dssp HHHCCEEEEEECSBBSS---------CCHHHHHHEEEEEEEEEEE
T ss_pred ccCCCcCEEEECCchHH---------HHHHHHHhcCCCcEEEEEE
Confidence 23 78999998543221 2456678899999988553
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=99.26 E-value=2.7e-12 Score=114.10 Aligned_cols=105 Identities=17% Similarity=0.078 Sum_probs=75.2
Q ss_pred CCCCEEEEECCcccHHHHHHHHcC-CCeEEEEech-HHHHHHHH----HHHHcCCCCcEEEEEcccccCCCC-CcccEEE
Q 016351 77 FQGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEAT-KMSDHART----LVKANNLQDVVEVIEGSVEDIVLP-EKVDVII 149 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~l~~~~a~~g-~~~V~avD~s-~~~~~a~~----~~~~~~~~~~v~~i~~d~~~~~~~-~~~D~Iv 149 (391)
.++.+|||||||+|.++..+++.+ ..+|+|+|+| .|++.+.+ +....++. +++++++|+.+++++ +. |.|+
T Consensus 26 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~-~v~~~~~d~~~l~~~~~~-d~v~ 103 (218)
T 3mq2_A 26 QYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGLP-NLLYLWATAERLPPLSGV-GELH 103 (218)
T ss_dssp TSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTCCT-TEEEEECCSTTCCSCCCE-EEEE
T ss_pred cCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcCCC-ceEEEecchhhCCCCCCC-CEEE
Confidence 467899999999999999999984 3489999999 87775433 33345554 499999999998766 34 7776
Q ss_pred Ecccccccc--CcchHHHHHHHHhccccCCeEEEcc
Q 016351 150 SEWMGYFLL--RESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 150 se~~~~~~~--~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
......... +-.+...++..+.++|||||.+++.
T Consensus 104 ~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 139 (218)
T 3mq2_A 104 VLMPWGSLLRGVLGSSPEMLRGMAAVCRPGASFLVA 139 (218)
T ss_dssp EESCCHHHHHHHHTSSSHHHHHHHHTEEEEEEEEEE
T ss_pred EEccchhhhhhhhccHHHHHHHHHHHcCCCcEEEEE
Confidence 321111110 1112267899999999999999873
|
| >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E | Back alignment and structure |
|---|
Probab=99.26 E-value=1.9e-11 Score=110.88 Aligned_cols=104 Identities=17% Similarity=0.254 Sum_probs=79.5
Q ss_pred CCCEEEEECCcccHHHHHHHHcCC-CeEEEEech-HHHHHHHHHHHHc--------CCCCcEEEEEccccc-CC--CC-C
Q 016351 78 QGKTVLDVGTGSGILAIWSAQAGA-RKVYAVEAT-KMSDHARTLVKAN--------NLQDVVEVIEGSVED-IV--LP-E 143 (391)
Q Consensus 78 ~~~~VLDlGcGtG~l~~~~a~~g~-~~V~avD~s-~~~~~a~~~~~~~--------~~~~~v~~i~~d~~~-~~--~~-~ 143 (391)
++.+|||||||+|.+++.+++.+. .+|+|||+| .+++.|+++++.+ ++.+ ++++.+|+.+ +. ++ +
T Consensus 49 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~n-v~~~~~D~~~~l~~~~~~~ 127 (246)
T 2vdv_E 49 KKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQN-INVLRGNAMKFLPNFFEKG 127 (246)
T ss_dssp CCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTT-EEEEECCTTSCGGGTSCTT
T ss_pred CCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCc-EEEEeccHHHHHHHhcccc
Confidence 567899999999999999999864 389999999 9999999998876 7754 9999999987 43 33 6
Q ss_pred cccEEEEcccccccc-----CcchHHHHHHHHhccccCCeEEEc
Q 016351 144 KVDVIISEWMGYFLL-----RESMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 144 ~~D~Ivse~~~~~~~-----~e~~l~~~l~~~~~~L~~gG~ii~ 182 (391)
.+|.|+......... .......++..+.++|+|||.++.
T Consensus 128 ~~d~v~~~~p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~ 171 (246)
T 2vdv_E 128 QLSKMFFCFPDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYT 171 (246)
T ss_dssp CEEEEEEESCCCC------CSSCCCHHHHHHHHHHEEEEEEEEE
T ss_pred ccCEEEEECCCcccccchhHHhhccHHHHHHHHHHcCCCCEEEE
Confidence 889888532111100 000114788899999999999886
|
| >2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} | Back alignment and structure |
|---|
Probab=99.26 E-value=3.9e-11 Score=110.75 Aligned_cols=104 Identities=19% Similarity=0.217 Sum_probs=82.3
Q ss_pred CCCEEEEECCcc---cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC-----------C
Q 016351 78 QGKTVLDVGTGS---GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV-----------L 141 (391)
Q Consensus 78 ~~~~VLDlGcGt---G~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~-----------~ 141 (391)
...+|||||||+ |.++..+++. ...+|+++|+| .|++.|++++... ++++++++|+.+.. +
T Consensus 77 ~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~~---~~v~~~~~D~~~~~~~~~~~~~~~~~ 153 (274)
T 2qe6_A 77 GISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAKD---PNTAVFTADVRDPEYILNHPDVRRMI 153 (274)
T ss_dssp CCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTTC---TTEEEEECCTTCHHHHHHSHHHHHHC
T ss_pred CCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCCC---CCeEEEEeeCCCchhhhccchhhccC
Confidence 347999999999 9888777665 23489999999 8999999987432 45999999997631 2
Q ss_pred C-CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcccc
Q 016351 142 P-EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 142 ~-~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~~ 185 (391)
+ .++|+|++..+.+++..+ ....++.++.++|+|||.+++...
T Consensus 154 d~~~~d~v~~~~vlh~~~d~-~~~~~l~~~~~~L~pGG~l~i~~~ 197 (274)
T 2qe6_A 154 DFSRPAAIMLVGMLHYLSPD-VVDRVVGAYRDALAPGSYLFMTSL 197 (274)
T ss_dssp CTTSCCEEEETTTGGGSCTT-THHHHHHHHHHHSCTTCEEEEEEE
T ss_pred CCCCCEEEEEechhhhCCcH-HHHHHHHHHHHhCCCCcEEEEEEe
Confidence 2 589999997666666554 578899999999999999987653
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=1.6e-11 Score=114.62 Aligned_cols=108 Identities=19% Similarity=0.149 Sum_probs=81.3
Q ss_pred CCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHH--cCC-CCcEEEEEcccccC-C-CCCcccEEEE
Q 016351 78 QGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKA--NNL-QDVVEVIEGSVEDI-V-LPEKVDVIIS 150 (391)
Q Consensus 78 ~~~~VLDlGcGtG~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~--~~~-~~~v~~i~~d~~~~-~-~~~~~D~Ivs 150 (391)
++.+|||||||+|.++..+++. +..+|++||++ .+++.|++++.. +++ ..+++++.+|+.+. . .+++||+|++
T Consensus 90 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~ 169 (296)
T 1inl_A 90 NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVIII 169 (296)
T ss_dssp SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEEE
T ss_pred CCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEEEE
Confidence 4589999999999999999987 56799999999 899999998765 334 35699999998774 2 2378999999
Q ss_pred ccccc-cccCcc-hHHHHHHHHhccccCCeEEEcccc
Q 016351 151 EWMGY-FLLRES-MFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 151 e~~~~-~~~~e~-~l~~~l~~~~~~L~~gG~ii~~~~ 185 (391)
++... ...... ....++..+.++|+|||+++....
T Consensus 170 d~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~ 206 (296)
T 1inl_A 170 DSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETE 206 (296)
T ss_dssp EC----------CCSHHHHHHHHHHEEEEEEEEEECC
T ss_pred cCCCcccCchhhhhHHHHHHHHHHhcCCCcEEEEEcc
Confidence 76433 111110 125788999999999999987643
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.25 E-value=3.2e-11 Score=114.41 Aligned_cols=113 Identities=16% Similarity=0.083 Sum_probs=88.2
Q ss_pred HHhcCCCCCCCEEEEECCcccHHHHHHHHcC-CCeEEEEechHHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEE
Q 016351 70 IFQNKHHFQGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVI 148 (391)
Q Consensus 70 i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g-~~~V~avD~s~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~~D~I 148 (391)
+...+...+ .+|||||||+|.++..+++.. ..+++++|+..+++.|++++...++.++|+++.+|+.+ +.++.||+|
T Consensus 160 ~~~~~~~~~-~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~~~D~v 237 (334)
T 2ip2_A 160 IPRLLDFRG-RSFVDVGGGSGELTKAILQAEPSARGVMLDREGSLGVARDNLSSLLAGERVSLVGGDMLQ-EVPSNGDIY 237 (334)
T ss_dssp HHHHSCCTT-CEEEEETCTTCHHHHHHHHHCTTCEEEEEECTTCTHHHHHHTHHHHHTTSEEEEESCTTT-CCCSSCSEE
T ss_pred HHHhCCCCC-CEEEEeCCCchHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHhhcCCCCcEEEecCCCCC-CCCCCCCEE
Confidence 333343334 899999999999999998873 34899999976889999988887777789999999987 566789999
Q ss_pred EEccccccccCcchHHHHHHHHhccccCCeEEEcccc
Q 016351 149 ISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 149 vse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~~ 185 (391)
++..+.+.+..+ ....+++.+.+.|+|||.+++...
T Consensus 238 ~~~~vl~~~~~~-~~~~~l~~~~~~L~pgG~l~i~e~ 273 (334)
T 2ip2_A 238 LLSRIIGDLDEA-ASLRLLGNCREAMAGDGRVVVIER 273 (334)
T ss_dssp EEESCGGGCCHH-HHHHHHHHHHHHSCTTCEEEEEEC
T ss_pred EEchhccCCCHH-HHHHHHHHHHHhcCCCCEEEEEEe
Confidence 985544433322 345789999999999999886643
|
| >2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=1.6e-11 Score=115.03 Aligned_cols=108 Identities=18% Similarity=0.129 Sum_probs=81.5
Q ss_pred CCCCEEEEECCcccHHHHHHHHcC-CCeEEEEech-HHHHHHHHHHHH--cCC-CCcEEEEEcccccC-C-CCCcccEEE
Q 016351 77 FQGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEAT-KMSDHARTLVKA--NNL-QDVVEVIEGSVEDI-V-LPEKVDVII 149 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~l~~~~a~~g-~~~V~avD~s-~~~~~a~~~~~~--~~~-~~~v~~i~~d~~~~-~-~~~~~D~Iv 149 (391)
.++++|||||||+|.++..+++.+ ..+|++||++ .+++.|++++.. +++ ..+++++.+|..+. . ..++||+|+
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD~Ii 173 (304)
T 2o07_A 94 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVII 173 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEE
T ss_pred CCCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCceEEE
Confidence 356899999999999999999873 5689999999 999999998765 344 45699999998773 2 247899999
Q ss_pred EccccccccCcc-hHHHHHHHHhccccCCeEEEccc
Q 016351 150 SEWMGYFLLRES-MFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 150 se~~~~~~~~e~-~l~~~l~~~~~~L~~gG~ii~~~ 184 (391)
++........+. ....+++.+.++|+|||+++...
T Consensus 174 ~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 209 (304)
T 2o07_A 174 TDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQG 209 (304)
T ss_dssp EECC-----------CHHHHHHHHHEEEEEEEEEEE
T ss_pred ECCCCCCCcchhhhHHHHHHHHHhccCCCeEEEEec
Confidence 976543221111 12467889999999999998754
|
| >1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=99.24 E-value=2.4e-11 Score=112.86 Aligned_cols=85 Identities=24% Similarity=0.330 Sum_probs=71.4
Q ss_pred HHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcc
Q 016351 67 FNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKV 145 (391)
Q Consensus 67 ~~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~~ 145 (391)
.+.|...+...++.+|||||||+|.++..+++.+. +|+|+|++ .|++.+++++..+++.++++++++|+.+++++ .|
T Consensus 17 ~~~i~~~~~~~~~~~VLDiG~G~G~lt~~L~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~~~~~~-~f 94 (285)
T 1zq9_A 17 INSIIDKAALRPTDVVLEVGPGTGNMTVKLLEKAK-KVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLP-FF 94 (285)
T ss_dssp HHHHHHHTCCCTTCEEEEECCTTSTTHHHHHHHSS-EEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCCC-CC
T ss_pred HHHHHHhcCCCCCCEEEEEcCcccHHHHHHHhhCC-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcceecccch-hh
Confidence 34455555556778999999999999999999876 89999999 99999999988777656699999999987665 89
Q ss_pred cEEEEccc
Q 016351 146 DVIISEWM 153 (391)
Q Consensus 146 D~Ivse~~ 153 (391)
|+|++++.
T Consensus 95 D~vv~nlp 102 (285)
T 1zq9_A 95 DTCVANLP 102 (285)
T ss_dssp SEEEEECC
T ss_pred cEEEEecC
Confidence 99999764
|
| >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.24 E-value=6.6e-12 Score=118.02 Aligned_cols=108 Identities=21% Similarity=0.211 Sum_probs=80.5
Q ss_pred CCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHc--CC-CCcEEEEEcccccC-C-CCCcccEEEE
Q 016351 78 QGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKAN--NL-QDVVEVIEGSVEDI-V-LPEKVDVIIS 150 (391)
Q Consensus 78 ~~~~VLDlGcGtG~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~--~~-~~~v~~i~~d~~~~-~-~~~~~D~Ivs 150 (391)
++++|||||||+|.++..+++. +..+|++||++ .+++.|++++... ++ ..+++++.+|+.+. . .+++||+|++
T Consensus 108 ~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~ 187 (314)
T 2b2c_A 108 DPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVIIT 187 (314)
T ss_dssp SCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEEE
T ss_pred CCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCceEEEE
Confidence 4589999999999999999987 45689999999 8999999987653 44 45799999998774 2 2478999999
Q ss_pred ccccccccCcchH-HHHHHHHhccccCCeEEEcccc
Q 016351 151 EWMGYFLLRESMF-DSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 151 e~~~~~~~~e~~l-~~~l~~~~~~L~~gG~ii~~~~ 185 (391)
+............ ..+++.+.++|+|||+++....
T Consensus 188 d~~~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~~~ 223 (314)
T 2b2c_A 188 DSSDPVGPAESLFGQSYYELLRDALKEDGILSSQGE 223 (314)
T ss_dssp CCC-------------HHHHHHHHEEEEEEEEEECC
T ss_pred cCCCCCCcchhhhHHHHHHHHHhhcCCCeEEEEECC
Confidence 7754332222212 5788999999999999997653
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=4.5e-12 Score=113.63 Aligned_cols=104 Identities=13% Similarity=0.061 Sum_probs=73.5
Q ss_pred CCCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-H-HHHHH---HHHHHHcCCCCcEEEEEcccccCCCCCcccEEEE
Q 016351 77 FQGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-K-MSDHA---RTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIIS 150 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~l~~~~a~~-g~~~V~avD~s-~-~~~~a---~~~~~~~~~~~~v~~i~~d~~~~~~~~~~D~Ivs 150 (391)
.++.+|||||||+|.++..+++. ...+|+|||+| + |++.| +++++..++.+ ++++++|+.+++. ..+|.|.+
T Consensus 23 ~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~-v~~~~~d~~~l~~-~~~d~v~~ 100 (225)
T 3p2e_A 23 QFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLSN-VVFVIAAAESLPF-ELKNIADS 100 (225)
T ss_dssp TCSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCCSS-EEEECCBTTBCCG-GGTTCEEE
T ss_pred CCCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCCC-eEEEEcCHHHhhh-hccCeEEE
Confidence 46689999999999999999865 33479999999 5 55555 87777788765 9999999998842 22344443
Q ss_pred ccccccccC--c---chHHHHHHHHhccccCCeEEEc
Q 016351 151 EWMGYFLLR--E---SMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 151 e~~~~~~~~--e---~~l~~~l~~~~~~L~~gG~ii~ 182 (391)
-.+.+.+.. + .....++.++.++|||||.+++
T Consensus 101 i~~~~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i 137 (225)
T 3p2e_A 101 ISILFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEF 137 (225)
T ss_dssp EEEESCCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEE
T ss_pred EEEeCCCcHHhhhhhcchHHHHHHHHHhcCCCcEEEE
Confidence 211111100 0 1124678999999999999887
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.23 E-value=2.6e-11 Score=107.88 Aligned_cols=98 Identities=21% Similarity=0.251 Sum_probs=77.1
Q ss_pred HHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-Cc
Q 016351 67 FNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EK 144 (391)
Q Consensus 67 ~~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~-~~ 144 (391)
.+.+.... ++.+|||||||+|.++..+++. +++|++ .+++.|+++ +++++.+|+.+++++ ++
T Consensus 39 ~~~l~~~~---~~~~vLDiG~G~G~~~~~l~~~-----~~vD~s~~~~~~a~~~--------~~~~~~~d~~~~~~~~~~ 102 (219)
T 1vlm_A 39 LQAVKCLL---PEGRGVEIGVGTGRFAVPLKIK-----IGVEPSERMAEIARKR--------GVFVLKGTAENLPLKDES 102 (219)
T ss_dssp HHHHHHHC---CSSCEEEETCTTSTTHHHHTCC-----EEEESCHHHHHHHHHT--------TCEEEECBTTBCCSCTTC
T ss_pred HHHHHHhC---CCCcEEEeCCCCCHHHHHHHHH-----hccCCCHHHHHHHHhc--------CCEEEEcccccCCCCCCC
Confidence 34454443 3788999999999998877654 999999 899888875 289999999888765 68
Q ss_pred ccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 145 VDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 145 ~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
||+|++..+.+.+ .....++..+.++|+|||.++..
T Consensus 103 fD~v~~~~~l~~~---~~~~~~l~~~~~~L~pgG~l~i~ 138 (219)
T 1vlm_A 103 FDFALMVTTICFV---DDPERALKEAYRILKKGGYLIVG 138 (219)
T ss_dssp EEEEEEESCGGGS---SCHHHHHHHHHHHEEEEEEEEEE
T ss_pred eeEEEEcchHhhc---cCHHHHHHHHHHHcCCCcEEEEE
Confidence 9999985433322 34678899999999999998865
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=99.23 E-value=3.2e-11 Score=107.45 Aligned_cols=101 Identities=26% Similarity=0.318 Sum_probs=78.6
Q ss_pred HHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccC--CCC-Ccc
Q 016351 70 IFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDI--VLP-EKV 145 (391)
Q Consensus 70 i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~--~~~-~~~ 145 (391)
+...+. .++.+|||+|||+|.++..+++.| .+|+++|++ .+++.++++. .+++.+|+.+. +++ ++|
T Consensus 25 l~~~~~-~~~~~vLdiG~G~G~~~~~l~~~~-~~~~~~D~~~~~~~~~~~~~--------~~~~~~d~~~~~~~~~~~~f 94 (230)
T 3cc8_A 25 LLKHIK-KEWKEVLDIGCSSGALGAAIKENG-TRVSGIEAFPEAAEQAKEKL--------DHVVLGDIETMDMPYEEEQF 94 (230)
T ss_dssp HHTTCC-TTCSEEEEETCTTSHHHHHHHTTT-CEEEEEESSHHHHHHHHTTS--------SEEEESCTTTCCCCSCTTCE
T ss_pred HHHHhc-cCCCcEEEeCCCCCHHHHHHHhcC-CeEEEEeCCHHHHHHHHHhC--------CcEEEcchhhcCCCCCCCcc
Confidence 444443 567899999999999999999887 589999999 8888877543 37889998873 333 789
Q ss_pred cEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 146 DVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 146 D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
|+|++..+.+.+ .....++..+.++|+|||.++..
T Consensus 95 D~v~~~~~l~~~---~~~~~~l~~~~~~L~~gG~l~~~ 129 (230)
T 3cc8_A 95 DCVIFGDVLEHL---FDPWAVIEKVKPYIKQNGVILAS 129 (230)
T ss_dssp EEEEEESCGGGS---SCHHHHHHHTGGGEEEEEEEEEE
T ss_pred CEEEECChhhhc---CCHHHHHHHHHHHcCCCCEEEEE
Confidence 999984432222 34578899999999999999865
|
| >2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} | Back alignment and structure |
|---|
Probab=99.23 E-value=3.7e-11 Score=115.87 Aligned_cols=97 Identities=10% Similarity=0.155 Sum_probs=81.9
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCC-CeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEccccc-CCC--CCcccEEEEc
Q 016351 77 FQGKTVLDVGTGSGILAIWSAQAGA-RKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVED-IVL--PEKVDVIISE 151 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~l~~~~a~~g~-~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~-~~~--~~~~D~Ivse 151 (391)
.++++|||+| |+|.+++.+++.++ .+|+++|++ .|++.|+++++.+++. +|+++++|+.+ ++. .++||+|+++
T Consensus 171 ~~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~~-~v~~~~~D~~~~l~~~~~~~fD~Vi~~ 248 (373)
T 2qm3_A 171 LENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGYE-DIEIFTFDLRKPLPDYALHKFDTFITD 248 (373)
T ss_dssp STTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTCC-CEEEECCCTTSCCCTTTSSCBSEEEEC
T ss_pred CCCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC-CEEEEEChhhhhchhhccCCccEEEEC
Confidence 4678999999 99999999998876 689999999 9999999999999987 59999999988 543 3689999998
Q ss_pred cccccccCcchHHHHHHHHhccccCCeE
Q 016351 152 WMGYFLLRESMFDSVICARDRWLKPTGV 179 (391)
Q Consensus 152 ~~~~~~~~e~~l~~~l~~~~~~L~~gG~ 179 (391)
+..... ....++..+.++|+|||.
T Consensus 249 ~p~~~~----~~~~~l~~~~~~LkpgG~ 272 (373)
T 2qm3_A 249 PPETLE----AIRAFVGRGIATLKGPRC 272 (373)
T ss_dssp CCSSHH----HHHHHHHHHHHTBCSTTC
T ss_pred CCCchH----HHHHHHHHHHHHcccCCe
Confidence 642221 247788999999999994
|
| >3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=2.4e-11 Score=117.12 Aligned_cols=108 Identities=20% Similarity=0.197 Sum_probs=83.6
Q ss_pred HHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCC-CeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-
Q 016351 66 YFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGA-RKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP- 142 (391)
Q Consensus 66 ~~~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g~-~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~- 142 (391)
....+.... ..++.+|||+|||+|.+++.+++.+. .+|+|+|++ .|++.|+++++.+++.++++++++|+.+++.+
T Consensus 206 la~~l~~~~-~~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~~~~~~ 284 (373)
T 3tm4_A 206 IANAMIELA-ELDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQLSQYV 284 (373)
T ss_dssp HHHHHHHHH-TCCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGGGGGTC
T ss_pred HHHHHHHhh-cCCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhhCCccc
Confidence 334444444 45678999999999999999999865 379999999 99999999999999977799999999998765
Q ss_pred CcccEEEEccccc-cccCc----chHHHHHHHHhccc
Q 016351 143 EKVDVIISEWMGY-FLLRE----SMFDSVICARDRWL 174 (391)
Q Consensus 143 ~~~D~Ivse~~~~-~~~~e----~~l~~~l~~~~~~L 174 (391)
++||+|++++.-. .+... .....+++.+.++|
T Consensus 285 ~~fD~Ii~npPyg~r~~~~~~~~~ly~~~~~~l~r~l 321 (373)
T 3tm4_A 285 DSVDFAISNLPYGLKIGKKSMIPDLYMKFFNELAKVL 321 (373)
T ss_dssp SCEEEEEEECCCC------CCHHHHHHHHHHHHHHHE
T ss_pred CCcCEEEECCCCCcccCcchhHHHHHHHHHHHHHHHc
Confidence 7899999986421 11111 12356777888888
|
| >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.22 E-value=3.1e-11 Score=112.76 Aligned_cols=104 Identities=16% Similarity=0.196 Sum_probs=80.8
Q ss_pred CEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccC--CC-CCcccEEEEcccc
Q 016351 80 KTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDI--VL-PEKVDVIISEWMG 154 (391)
Q Consensus 80 ~~VLDlGcGtG~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~--~~-~~~~D~Ivse~~~ 154 (391)
.+|||||||+|.++..+++. ...+|++||++ .+++.|++++.... ..+++++.+|..++ .. .++||+|+++...
T Consensus 91 ~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~-~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~~ 169 (317)
T 3gjy_A 91 LRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPR-APRVKIRVDDARMVAESFTPASRDVIIRDVFA 169 (317)
T ss_dssp CEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCC-TTTEEEEESCHHHHHHTCCTTCEEEEEECCST
T ss_pred CEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccC-CCceEEEECcHHHHHhhccCCCCCEEEECCCC
Confidence 49999999999999999984 34489999999 99999999875432 35699999999875 23 3789999997654
Q ss_pred ccccCcc-hHHHHHHHHhccccCCeEEEccc
Q 016351 155 YFLLRES-MFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 155 ~~~~~e~-~l~~~l~~~~~~L~~gG~ii~~~ 184 (391)
....... ....+++.++++|+|||+++...
T Consensus 170 ~~~~~~~L~t~efl~~~~r~LkpgGvlv~~~ 200 (317)
T 3gjy_A 170 GAITPQNFTTVEFFEHCHRGLAPGGLYVANC 200 (317)
T ss_dssp TSCCCGGGSBHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccchhhhHHHHHHHHHHhcCCCcEEEEEe
Confidence 3221111 12678999999999999998654
|
| >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=3.7e-11 Score=113.10 Aligned_cols=108 Identities=18% Similarity=0.146 Sum_probs=83.7
Q ss_pred CCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHH--cC-C-CCcEEEEEcccccC-C-CCCcccEEE
Q 016351 78 QGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKA--NN-L-QDVVEVIEGSVEDI-V-LPEKVDVII 149 (391)
Q Consensus 78 ~~~~VLDlGcGtG~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~--~~-~-~~~v~~i~~d~~~~-~-~~~~~D~Iv 149 (391)
++++|||||||+|.++..+++. +..+|++||++ .+++.|++++.. .+ + ..+++++.+|+.+. . .+++||+|+
T Consensus 77 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii 156 (314)
T 1uir_A 77 EPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVVI 156 (314)
T ss_dssp CCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEEE
T ss_pred CCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccEEE
Confidence 4589999999999999999987 45689999999 899999998764 22 3 35699999999874 2 247899999
Q ss_pred Ecccccc---ccCcc-hHHHHHHHHhccccCCeEEEcccc
Q 016351 150 SEWMGYF---LLRES-MFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 150 se~~~~~---~~~e~-~l~~~l~~~~~~L~~gG~ii~~~~ 185 (391)
++..... ..... ....+++.+.++|+|||+++....
T Consensus 157 ~d~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~ 196 (314)
T 1uir_A 157 IDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTG 196 (314)
T ss_dssp EECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEE
T ss_pred ECCCCcccccCcchhccHHHHHHHHHHhcCCCcEEEEEcc
Confidence 9765433 11111 136789999999999999987643
|
| >2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=7.6e-12 Score=112.94 Aligned_cols=96 Identities=10% Similarity=0.113 Sum_probs=75.5
Q ss_pred CCCEEEEECCcccHHHHHHHHc----C-CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccC---CC-C-Cccc
Q 016351 78 QGKTVLDVGTGSGILAIWSAQA----G-ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDI---VL-P-EKVD 146 (391)
Q Consensus 78 ~~~~VLDlGcGtG~l~~~~a~~----g-~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~---~~-~-~~~D 146 (391)
++.+|||||||+|..+..+++. + ..+|+|||++ .|++.|+ ++.++|+++++|+.+. +. . .+||
T Consensus 81 ~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~------~~~~~v~~~~gD~~~~~~l~~~~~~~fD 154 (236)
T 2bm8_A 81 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPA------SDMENITLHQGDCSDLTTFEHLREMAHP 154 (236)
T ss_dssp CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCG------GGCTTEEEEECCSSCSGGGGGGSSSCSS
T ss_pred CCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHh------ccCCceEEEECcchhHHHHHhhccCCCC
Confidence 4579999999999999999886 2 3489999999 8888776 2235699999999884 32 2 3799
Q ss_pred EEEEccccccccCcchHHHHHHHHhc-cccCCeEEEcccc
Q 016351 147 VIISEWMGYFLLRESMFDSVICARDR-WLKPTGVMYPSHA 185 (391)
Q Consensus 147 ~Ivse~~~~~~~~e~~l~~~l~~~~~-~L~~gG~ii~~~~ 185 (391)
+|+++.. + . ....++..+.+ +|+|||+++....
T Consensus 155 ~I~~d~~-~----~-~~~~~l~~~~r~~LkpGG~lv~~d~ 188 (236)
T 2bm8_A 155 LIFIDNA-H----A-NTFNIMKWAVDHLLEEGDYFIIEDM 188 (236)
T ss_dssp EEEEESS-C----S-SHHHHHHHHHHHTCCTTCEEEECSC
T ss_pred EEEECCc-h----H-hHHHHHHHHHHhhCCCCCEEEEEeC
Confidence 9998653 1 2 45678888887 9999999998654
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.22 E-value=1.8e-11 Score=107.34 Aligned_cols=90 Identities=26% Similarity=0.212 Sum_probs=69.9
Q ss_pred CCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEcccc
Q 016351 76 HFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMG 154 (391)
Q Consensus 76 ~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~~D~Ivse~~~ 154 (391)
..++.+|||+|||+|.++..+++.|..+|+|+|++ .+++.|++++. +++++++|+.+++ ++||+|++++..
T Consensus 49 ~~~~~~vlD~gcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~------~~~~~~~d~~~~~--~~~D~v~~~~p~ 120 (200)
T 1ne2_A 49 NIGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCG------GVNFMVADVSEIS--GKYDTWIMNPPF 120 (200)
T ss_dssp SSBTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCT------TSEEEECCGGGCC--CCEEEEEECCCC
T ss_pred CCCCCEEEEEeCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHhcC------CCEEEECcHHHCC--CCeeEEEECCCc
Confidence 34678999999999999999999887789999999 89999988765 3899999999864 789999998754
Q ss_pred ccccCcchHHHHHHHHhccc
Q 016351 155 YFLLRESMFDSVICARDRWL 174 (391)
Q Consensus 155 ~~~~~e~~l~~~l~~~~~~L 174 (391)
+.... .....+++.+.+.+
T Consensus 121 ~~~~~-~~~~~~l~~~~~~~ 139 (200)
T 1ne2_A 121 GSVVK-HSDRAFIDKAFETS 139 (200)
T ss_dssp --------CHHHHHHHHHHE
T ss_pred hhccC-chhHHHHHHHHHhc
Confidence 43332 22345677777777
|
| >2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=3.4e-11 Score=111.69 Aligned_cols=109 Identities=19% Similarity=0.185 Sum_probs=84.3
Q ss_pred CCCCEEEEECCcccHHHHHHHHcC-CCeEEEEech-HHHHHHHHHHHHcC--C-CCcEEEEEcccccCC--CCCcccEEE
Q 016351 77 FQGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEAT-KMSDHARTLVKANN--L-QDVVEVIEGSVEDIV--LPEKVDVII 149 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~l~~~~a~~g-~~~V~avD~s-~~~~~a~~~~~~~~--~-~~~v~~i~~d~~~~~--~~~~~D~Iv 149 (391)
.++++|||||||+|.++..+++.. ..+|+++|++ .+++.|++++...+ + ..+++++.+|+.+.. .+++||+|+
T Consensus 77 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii 156 (283)
T 2i7c_A 77 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII 156 (283)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred CCCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCceEEE
Confidence 356899999999999999999873 5689999999 89999999876532 2 346999999988742 247899999
Q ss_pred EccccccccCcchH-HHHHHHHhccccCCeEEEcccc
Q 016351 150 SEWMGYFLLRESMF-DSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 150 se~~~~~~~~e~~l-~~~l~~~~~~L~~gG~ii~~~~ 185 (391)
++............ ..+++.+.++|+|||+++....
T Consensus 157 ~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~ 193 (283)
T 2i7c_A 157 VDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQCE 193 (283)
T ss_dssp EECCCTTTGGGGGSSHHHHHHHHHHEEEEEEEEEECC
T ss_pred EcCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEECC
Confidence 97654332222211 6789999999999999986643
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.21 E-value=1.4e-11 Score=105.29 Aligned_cols=94 Identities=17% Similarity=0.142 Sum_probs=69.6
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEccccc
Q 016351 77 FQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMGY 155 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~~D~Ivse~~~~ 155 (391)
.++.+|||+|||+|.++..+++.+ +|+|+|+| .|++. .++++++++|+.+....++||+|++++..+
T Consensus 22 ~~~~~vLD~GcG~G~~~~~l~~~~--~v~gvD~s~~~~~~----------~~~~~~~~~d~~~~~~~~~fD~i~~n~~~~ 89 (170)
T 3q87_B 22 LEMKIVLDLGTSTGVITEQLRKRN--TVVSTDLNIRALES----------HRGGNLVRADLLCSINQESVDVVVFNPPYV 89 (170)
T ss_dssp CCSCEEEEETCTTCHHHHHHTTTS--EEEEEESCHHHHHT----------CSSSCEEECSTTTTBCGGGCSEEEECCCCB
T ss_pred CCCCeEEEeccCccHHHHHHHhcC--cEEEEECCHHHHhc----------ccCCeEEECChhhhcccCCCCEEEECCCCc
Confidence 456799999999999999999988 89999999 88766 244899999998843338999999976432
Q ss_pred cccC------cchHHHHHHHHhccccCCeEEEcc
Q 016351 156 FLLR------ESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 156 ~~~~------e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
.... ......++..+.+.| |||.++..
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~l-pgG~l~~~ 122 (170)
T 3q87_B 90 PDTDDPIIGGGYLGREVIDRFVDAV-TVGMLYLL 122 (170)
T ss_dssp TTCCCTTTBCCGGGCHHHHHHHHHC-CSSEEEEE
T ss_pred cCCccccccCCcchHHHHHHHHhhC-CCCEEEEE
Confidence 2111 111234566666666 99998754
|
| >3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=2.4e-11 Score=119.60 Aligned_cols=112 Identities=17% Similarity=0.114 Sum_probs=88.8
Q ss_pred CCCCCCEEEEECCcccHHHHHHHHc--CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC--CCCcccEEE
Q 016351 75 HHFQGKTVLDVGTGSGILAIWSAQA--GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV--LPEKVDVII 149 (391)
Q Consensus 75 ~~~~~~~VLDlGcGtG~l~~~~a~~--g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~--~~~~~D~Iv 149 (391)
...++.+|||+|||+|..+..+|+. +..+|+|+|++ .+++.++++++.+|+. |+++++|+.++. .+++||+|+
T Consensus 98 ~~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~--v~~~~~Da~~l~~~~~~~FD~Il 175 (464)
T 3m6w_A 98 DPKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAP--LAVTQAPPRALAEAFGTYFHRVL 175 (464)
T ss_dssp CCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCC--CEEECSCHHHHHHHHCSCEEEEE
T ss_pred CcCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCe--EEEEECCHHHhhhhccccCCEEE
Confidence 3457889999999999999999876 33589999999 9999999999999997 999999998875 357899999
Q ss_pred Ecccccccc----Cc--------c-------hHHHHHHHHhccccCCeEEEcccceeE
Q 016351 150 SEWMGYFLL----RE--------S-------MFDSVICARDRWLKPTGVMYPSHARMW 188 (391)
Q Consensus 150 se~~~~~~~----~e--------~-------~l~~~l~~~~~~L~~gG~ii~~~~~~~ 188 (391)
+++...... .. . ....++..+.++|||||+++.+.+++.
T Consensus 176 ~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTCs~~ 233 (464)
T 3m6w_A 176 LDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCTFA 233 (464)
T ss_dssp EECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCC
T ss_pred ECCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeccCc
Confidence 876432111 00 0 126788899999999999997766543
|
| >3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} | Back alignment and structure |
|---|
Probab=99.20 E-value=3.1e-11 Score=118.63 Aligned_cols=113 Identities=16% Similarity=0.099 Sum_probs=89.2
Q ss_pred CCCCCCEEEEECCcccHHHHHHHHc--CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC--CCCcccEEE
Q 016351 75 HHFQGKTVLDVGTGSGILAIWSAQA--GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV--LPEKVDVII 149 (391)
Q Consensus 75 ~~~~~~~VLDlGcGtG~l~~~~a~~--g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~--~~~~~D~Iv 149 (391)
...++.+|||+|||+|..+..+|+. +..+|+|+|++ .+++.++++++.+|+.+ |.++++|..++. .+++||+|+
T Consensus 102 ~~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~n-v~v~~~Da~~l~~~~~~~FD~Il 180 (456)
T 3m4x_A 102 AAKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVSN-AIVTNHAPAELVPHFSGFFDRIV 180 (456)
T ss_dssp CCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCSS-EEEECCCHHHHHHHHTTCEEEEE
T ss_pred CCCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCc-eEEEeCCHHHhhhhccccCCEEE
Confidence 3457889999999999999998876 34589999999 89999999999999976 999999998864 357899999
Q ss_pred Ecccccccc--C-c----------------chHHHHHHHHhccccCCeEEEcccceeE
Q 016351 150 SEWMGYFLL--R-E----------------SMFDSVICARDRWLKPTGVMYPSHARMW 188 (391)
Q Consensus 150 se~~~~~~~--~-e----------------~~l~~~l~~~~~~L~~gG~ii~~~~~~~ 188 (391)
+++..+... . . .....++..+.++|||||+++.+.+++.
T Consensus 181 ~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~ 238 (456)
T 3m4x_A 181 VDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCTFA 238 (456)
T ss_dssp EECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESCCC
T ss_pred ECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEeecc
Confidence 976422211 0 0 0123678888999999999997766543
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.20 E-value=5.3e-11 Score=106.50 Aligned_cols=100 Identities=17% Similarity=0.182 Sum_probs=76.9
Q ss_pred CCCCCEEEEECCcccHHHHHHHHc-CC------CeEEEEech-HHHHHHHHHHHHcCC----CCcEEEEEcccccCCCC-
Q 016351 76 HFQGKTVLDVGTGSGILAIWSAQA-GA------RKVYAVEAT-KMSDHARTLVKANNL----QDVVEVIEGSVEDIVLP- 142 (391)
Q Consensus 76 ~~~~~~VLDlGcGtG~l~~~~a~~-g~------~~V~avD~s-~~~~~a~~~~~~~~~----~~~v~~i~~d~~~~~~~- 142 (391)
..++.+|||||||+|.++..+++. +. .+|+++|++ .+++.|+++++.+++ .++++++.+|..+....
T Consensus 82 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~ 161 (227)
T 1r18_A 82 LKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYPPN 161 (227)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCGGG
T ss_pred CCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCcccCCCcC
Confidence 456789999999999999998885 42 489999999 999999999887651 13499999999873222
Q ss_pred CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEccc
Q 016351 143 EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 143 ~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~ 184 (391)
++||+|++...... +...+.+.|+|||+++...
T Consensus 162 ~~fD~I~~~~~~~~---------~~~~~~~~LkpgG~lvi~~ 194 (227)
T 1r18_A 162 APYNAIHVGAAAPD---------TPTELINQLASGGRLIVPV 194 (227)
T ss_dssp CSEEEEEECSCBSS---------CCHHHHHTEEEEEEEEEEE
T ss_pred CCccEEEECCchHH---------HHHHHHHHhcCCCEEEEEE
Confidence 68999998543221 2256778999999988553
|
| >3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=3.2e-11 Score=108.23 Aligned_cols=113 Identities=13% Similarity=0.077 Sum_probs=89.8
Q ss_pred HHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC
Q 016351 63 MDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV 140 (391)
Q Consensus 63 ~~~~~~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~ 140 (391)
.+.|+..+...+ .+..+|||||||+|.+++.++.. +..+|+|+|++ .|++.+++++..+|+. .++...|...-.
T Consensus 119 lD~fY~~i~~~i--~~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g~~--~~~~v~D~~~~~ 194 (281)
T 3lcv_B 119 LDEFYRELFRHL--PRPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNVP--HRTNVADLLEDR 194 (281)
T ss_dssp HHHHHHHHGGGS--CCCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTTCC--EEEEECCTTTSC
T ss_pred HHHHHHHHHhcc--CCCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcCCC--ceEEEeeecccC
Confidence 445555565554 33679999999999999998877 66699999999 9999999999999987 788999988877
Q ss_pred CCCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEE
Q 016351 141 LPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMY 181 (391)
Q Consensus 141 ~~~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii 181 (391)
+++++|++++..+-+++..+.. ...+ .+...|+++|++|
T Consensus 195 p~~~~DvaL~lkti~~Le~q~k-g~g~-~ll~aL~~~~vvV 233 (281)
T 3lcv_B 195 LDEPADVTLLLKTLPCLETQQR-GSGW-EVIDIVNSPNIVV 233 (281)
T ss_dssp CCSCCSEEEETTCHHHHHHHST-THHH-HHHHHSSCSEEEE
T ss_pred CCCCcchHHHHHHHHHhhhhhh-HHHH-HHHHHhCCCCEEE
Confidence 7799999999666666654432 2334 5677899999887
|
| >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=99.20 E-value=5.6e-12 Score=113.45 Aligned_cols=105 Identities=19% Similarity=0.187 Sum_probs=70.9
Q ss_pred HHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEE-cccccCC---
Q 016351 66 YFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIE-GSVEDIV--- 140 (391)
Q Consensus 66 ~~~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~-~d~~~~~--- 140 (391)
+.+++.......++++|||||||+|.++..+++.|+.+|+|||+| .|++.|+++... +.... .++..+.
T Consensus 25 L~~~L~~~~~~~~g~~VLDiGcGtG~~t~~la~~g~~~V~gvDis~~ml~~a~~~~~~------~~~~~~~~~~~~~~~~ 98 (232)
T 3opn_A 25 LEKALKEFHLEINGKTCLDIGSSTGGFTDVMLQNGAKLVYALDVGTNQLAWKIRSDER------VVVMEQFNFRNAVLAD 98 (232)
T ss_dssp HHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSCCCCCHHHHTCTT------EEEECSCCGGGCCGGG
T ss_pred HHHHHHHcCCCCCCCEEEEEccCCCHHHHHHHhcCCCEEEEEcCCHHHHHHHHHhCcc------ccccccceEEEeCHhH
Confidence 344455443345678999999999999999999987799999999 899887664322 22211 1222211
Q ss_pred CCC-cccEEEEccccccccCcchHHHHHHHHhccccCCeEEEc
Q 016351 141 LPE-KVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 141 ~~~-~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~ 182 (391)
++. .+|.+.++.+... +..++.++.++|||||.+++
T Consensus 99 ~~~~~~d~~~~D~v~~~------l~~~l~~i~rvLkpgG~lv~ 135 (232)
T 3opn_A 99 FEQGRPSFTSIDVSFIS------LDLILPPLYEILEKNGEVAA 135 (232)
T ss_dssp CCSCCCSEEEECCSSSC------GGGTHHHHHHHSCTTCEEEE
T ss_pred cCcCCCCEEEEEEEhhh------HHHHHHHHHHhccCCCEEEE
Confidence 122 3576666543222 25678899999999999886
|
| >3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=1.2e-10 Score=103.61 Aligned_cols=99 Identities=18% Similarity=0.176 Sum_probs=80.3
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEccccc
Q 016351 77 FQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMGY 155 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~~D~Ivse~~~~ 155 (391)
.+..+|||||||+|.+++.+. +..+|+|+|++ .+++.+++++..++.. ..+..+|.....+++++|+|++..+-+
T Consensus 104 ~~p~~VLDlGCG~gpLal~~~--~~~~y~a~DId~~~i~~ar~~~~~~g~~--~~~~v~D~~~~~~~~~~DvvLllk~lh 179 (253)
T 3frh_A 104 ETPRRVLDIACGLNPLALYER--GIASVWGCDIHQGLGDVITPFAREKDWD--FTFALQDVLCAPPAEAGDLALIFKLLP 179 (253)
T ss_dssp CCCSEEEEETCTTTHHHHHHT--TCSEEEEEESBHHHHHHHHHHHHHTTCE--EEEEECCTTTSCCCCBCSEEEEESCHH
T ss_pred CCCCeEEEecCCccHHHHHhc--cCCeEEEEeCCHHHHHHHHHHHHhcCCC--ceEEEeecccCCCCCCcchHHHHHHHH
Confidence 456899999999999999877 66689999999 9999999999998854 899999999888889999999865556
Q ss_pred cccCcchHHHHHHHHhccccCCeEEE
Q 016351 156 FLLRESMFDSVICARDRWLKPTGVMY 181 (391)
Q Consensus 156 ~~~~e~~l~~~l~~~~~~L~~gG~ii 181 (391)
++..+.. ...+ ++...|++++++|
T Consensus 180 ~LE~q~~-~~~~-~ll~aL~~~~vvV 203 (253)
T 3frh_A 180 LLEREQA-GSAM-ALLQSLNTPRMAV 203 (253)
T ss_dssp HHHHHST-THHH-HHHHHCBCSEEEE
T ss_pred Hhhhhch-hhHH-HHHHHhcCCCEEE
Confidence 6654432 2333 5555789999877
|
| >3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=99.19 E-value=5.8e-11 Score=114.76 Aligned_cols=118 Identities=15% Similarity=0.133 Sum_probs=92.0
Q ss_pred HHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCC---------------------------------------Ce
Q 016351 63 MDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGA---------------------------------------RK 103 (391)
Q Consensus 63 ~~~~~~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g~---------------------------------------~~ 103 (391)
.+.+..++.......++..|||++||+|.+++.+|..+. .+
T Consensus 180 ~e~lAa~ll~~~~~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~ 259 (385)
T 3ldu_A 180 RETLAAGLIYLTPWKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFK 259 (385)
T ss_dssp CHHHHHHHHHTSCCCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCC
T ss_pred cHHHHHHHHHhhCCCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCce
Confidence 345666777776666788999999999999999887642 36
Q ss_pred EEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEcccc-ccccCcchHHHHHHHHhccccC--CeE
Q 016351 104 VYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMG-YFLLRESMFDSVICARDRWLKP--TGV 179 (391)
Q Consensus 104 V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~~D~Ivse~~~-~~~~~e~~l~~~l~~~~~~L~~--gG~ 179 (391)
|+|+|++ .+++.|++++..+++.+.|++.++|+.++..+++||+|++++.- .-+..+..+..++..+.+.|++ |+.
T Consensus 260 V~GvDid~~ai~~Ar~Na~~~gl~~~i~~~~~D~~~l~~~~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~lk~~~g~~ 339 (385)
T 3ldu_A 260 IYGYDIDEESIDIARENAEIAGVDEYIEFNVGDATQFKSEDEFGFIITNPPYGERLEDKDSVKQLYKELGYAFRKLKNWS 339 (385)
T ss_dssp EEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCGGGCCCSCBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTSBSCE
T ss_pred EEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhcCcCCCCcEEEECCCCcCccCCHHHHHHHHHHHHHHHhhCCCCE
Confidence 9999999 99999999999999987899999999998777899999998742 1222223456667766667766 444
Q ss_pred E
Q 016351 180 M 180 (391)
Q Consensus 180 i 180 (391)
+
T Consensus 340 ~ 340 (385)
T 3ldu_A 340 Y 340 (385)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} | Back alignment and structure |
|---|
Probab=99.18 E-value=2.6e-12 Score=117.85 Aligned_cols=103 Identities=14% Similarity=0.092 Sum_probs=71.5
Q ss_pred CCCCCEEEEECCcccHHHHHHHHcCCCeEEEEechHHHHHHHHHH-HHcCCCCcEEEE--EcccccCCCCCcccEEEEcc
Q 016351 76 HFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEATKMSDHARTLV-KANNLQDVVEVI--EGSVEDIVLPEKVDVIISEW 152 (391)
Q Consensus 76 ~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s~~~~~a~~~~-~~~~~~~~v~~i--~~d~~~~~~~~~~D~Ivse~ 152 (391)
..++.+|||||||+|.++..+++. .+|+|||+++|+..+++.. .......++.++ ++|+.+++ +++||+|+|+.
T Consensus 72 ~~~g~~VLDlGcGtG~~s~~la~~--~~V~gvD~s~m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~-~~~fD~V~sd~ 148 (265)
T 2oxt_A 72 VELTGRVVDLGCGRGGWSYYAASR--PHVMDVRAYTLGVGGHEVPRITESYGWNIVKFKSRVDIHTLP-VERTDVIMCDV 148 (265)
T ss_dssp CCCCEEEEEESCTTSHHHHHHHTS--TTEEEEEEECCCCSSCCCCCCCCBTTGGGEEEECSCCTTTSC-CCCCSEEEECC
T ss_pred CCCCCEEEEeCcCCCHHHHHHHHc--CcEEEEECchhhhhhhhhhhhhhccCCCeEEEecccCHhHCC-CCCCcEEEEeC
Confidence 446789999999999999999988 4799999997532221110 000111148999 99999876 57999999986
Q ss_pred ccccccCc-ch-H--HHHHHHHhccccCCe--EEEc
Q 016351 153 MGYFLLRE-SM-F--DSVICARDRWLKPTG--VMYP 182 (391)
Q Consensus 153 ~~~~~~~e-~~-l--~~~l~~~~~~L~~gG--~ii~ 182 (391)
. +..... .+ . ..++..+.++|+||| .++.
T Consensus 149 ~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~ 183 (265)
T 2oxt_A 149 G-ESSPKWSVESERTIKILELLEKWKVKNPSADFVV 183 (265)
T ss_dssp C-CCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEE
T ss_pred c-ccCCccchhHHHHHHHHHHHHHHhccCCCeEEEE
Confidence 5 322111 01 1 126788889999999 8875
|
| >3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=99.18 E-value=1.3e-10 Score=112.13 Aligned_cols=117 Identities=23% Similarity=0.258 Sum_probs=92.4
Q ss_pred HHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCC---------------------------------------CeE
Q 016351 64 DAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGA---------------------------------------RKV 104 (391)
Q Consensus 64 ~~~~~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g~---------------------------------------~~V 104 (391)
+.+..++.......++..|||.+||+|.+.+.+|..+. .+|
T Consensus 180 e~LAaall~l~~~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v 259 (384)
T 3ldg_A 180 ENMAAAIILLSNWFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDI 259 (384)
T ss_dssp HHHHHHHHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCE
T ss_pred HHHHHHHHHHhCCCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceE
Confidence 45666677666666788999999999999998887543 259
Q ss_pred EEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEccc-cccccCcchHHHHHHHHhccccC--CeEE
Q 016351 105 YAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWM-GYFLLRESMFDSVICARDRWLKP--TGVM 180 (391)
Q Consensus 105 ~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~~D~Ivse~~-~~~~~~e~~l~~~l~~~~~~L~~--gG~i 180 (391)
+|+|++ .|++.|+++++.+|+.+.|+++++|+.++..+.+||+|++++. +.-+..+..+..++..+.+.|++ |+.+
T Consensus 260 ~GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~l~~~~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~lk~~~g~~~ 339 (384)
T 3ldg_A 260 SGFDFDGRMVEIARKNAREVGLEDVVKLKQMRLQDFKTNKINGVLISNPPYGERLLDDKAVDILYNEMGETFAPLKTWSQ 339 (384)
T ss_dssp EEEESCHHHHHHHHHHHHHTTCTTTEEEEECCGGGCCCCCCSCEEEECCCCTTTTSCHHHHHHHHHHHHHHHTTCTTSEE
T ss_pred EEEECCHHHHHHHHHHHHHcCCCCceEEEECChHHCCccCCcCEEEECCchhhccCCHHHHHHHHHHHHHHHhhCCCcEE
Confidence 999999 9999999999999999889999999999887789999999874 22233334566667666666665 5544
|
| >2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=2.3e-10 Score=111.88 Aligned_cols=98 Identities=22% Similarity=0.307 Sum_probs=79.6
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEccccc
Q 016351 77 FQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMGY 155 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~~D~Ivse~~~~ 155 (391)
.++.+|||+|||+|.+++.+++.+. +|+|+|++ .+++.|+++++.|++. ++++.+|+.++.. .+||+|++++.-.
T Consensus 289 ~~~~~VLDlgcG~G~~sl~la~~~~-~V~gvD~s~~ai~~A~~n~~~ngl~--v~~~~~d~~~~~~-~~fD~Vv~dPPr~ 364 (425)
T 2jjq_A 289 VEGEKILDMYSGVGTFGIYLAKRGF-NVKGFDSNEFAIEMARRNVEINNVD--AEFEVASDREVSV-KGFDTVIVDPPRA 364 (425)
T ss_dssp CCSSEEEEETCTTTHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHTCC--EEEEECCTTTCCC-TTCSEEEECCCTT
T ss_pred CCCCEEEEeeccchHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHcCCc--EEEEECChHHcCc-cCCCEEEEcCCcc
Confidence 4668999999999999999998855 89999999 9999999999999986 9999999998743 4899999987422
Q ss_pred cccCcchHHHHHHHHhccccCCeEEEccc
Q 016351 156 FLLRESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 156 ~~~~e~~l~~~l~~~~~~L~~gG~ii~~~ 184 (391)
. ....+++.+. .|+|+|+++.+.
T Consensus 365 g-----~~~~~~~~l~-~l~p~givyvsc 387 (425)
T 2jjq_A 365 G-----LHPRLVKRLN-REKPGVIVYVSC 387 (425)
T ss_dssp C-----SCHHHHHHHH-HHCCSEEEEEES
T ss_pred c-----hHHHHHHHHH-hcCCCcEEEEEC
Confidence 1 1233555554 489999888654
|
| >3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.18 E-value=8e-11 Score=113.98 Aligned_cols=119 Identities=15% Similarity=0.130 Sum_probs=91.5
Q ss_pred HHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCC---------------------------------------Ce
Q 016351 63 MDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGA---------------------------------------RK 103 (391)
Q Consensus 63 ~~~~~~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g~---------------------------------------~~ 103 (391)
.+.+..++.......++..|||.+||+|.+++.+|..+. .+
T Consensus 186 ~e~lAa~ll~l~~~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~ 265 (393)
T 3k0b_A 186 KETMAAALVLLTSWHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLN 265 (393)
T ss_dssp CHHHHHHHHHHSCCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCC
T ss_pred cHHHHHHHHHHhCCCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCce
Confidence 345566677766666778999999999999998887643 25
Q ss_pred EEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEcccc-ccccCcchHHHHHHHHhccccC--CeE
Q 016351 104 VYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMG-YFLLRESMFDSVICARDRWLKP--TGV 179 (391)
Q Consensus 104 V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~~D~Ivse~~~-~~~~~e~~l~~~l~~~~~~L~~--gG~ 179 (391)
|+|+|++ .|++.|+++++.+|+.+.|+++++|+.++..+.+||+|++++.- .-+..+..+..+...+.+.|++ ||.
T Consensus 266 V~GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~~~~~~~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~~lk~~~g~~ 345 (393)
T 3k0b_A 266 IIGGDIDARLIEIAKQNAVEAGLGDLITFRQLQVADFQTEDEYGVVVANPPYGERLEDEEAVRQLYREMGIVYKRMPTWS 345 (393)
T ss_dssp EEEEESCHHHHHHHHHHHHHTTCTTCSEEEECCGGGCCCCCCSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTCTTCE
T ss_pred EEEEECCHHHHHHHHHHHHHcCCCCceEEEECChHhCCCCCCCCEEEECCCCccccCCchhHHHHHHHHHHHHhcCCCCE
Confidence 9999999 99999999999999988899999999998877899999998742 1222223455566666666665 655
Q ss_pred EE
Q 016351 180 MY 181 (391)
Q Consensus 180 ii 181 (391)
+.
T Consensus 346 ~~ 347 (393)
T 3k0b_A 346 VY 347 (393)
T ss_dssp EE
T ss_pred EE
Confidence 43
|
| >2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.17 E-value=6.5e-11 Score=117.40 Aligned_cols=110 Identities=15% Similarity=0.078 Sum_probs=87.4
Q ss_pred CCCEEEEECCcccHHHHHHHHc-C-CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC--CCCcccEEEEcc
Q 016351 78 QGKTVLDVGTGSGILAIWSAQA-G-ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV--LPEKVDVIISEW 152 (391)
Q Consensus 78 ~~~~VLDlGcGtG~l~~~~a~~-g-~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~--~~~~~D~Ivse~ 152 (391)
++.+|||+|||+|..+..+|+. + ..+|+|+|++ .+++.++++++.+|+.+ |+++++|+.++. .++.||+|++++
T Consensus 117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~n-v~~~~~D~~~~~~~~~~~fD~Il~D~ 195 (479)
T 2frx_A 117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISN-VALTHFDGRVFGAAVPEMFDAILLDA 195 (479)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCCS-EEEECCCSTTHHHHSTTCEEEEEEEC
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCc-EEEEeCCHHHhhhhccccCCEEEECC
Confidence 7789999999999999998886 2 3589999999 99999999999999875 999999998864 357899999976
Q ss_pred cccccc----Cc---------------chHHHHHHHHhccccCCeEEEcccceeE
Q 016351 153 MGYFLL----RE---------------SMFDSVICARDRWLKPTGVMYPSHARMW 188 (391)
Q Consensus 153 ~~~~~~----~e---------------~~l~~~l~~~~~~L~~gG~ii~~~~~~~ 188 (391)
..+... .. .....++..+.++|||||+++.+.+++.
T Consensus 196 PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTcs~~ 250 (479)
T 2frx_A 196 PCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCTLN 250 (479)
T ss_dssp CCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCS
T ss_pred CcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEecccCC
Confidence 432110 00 0124678888999999999997766543
|
| >3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=3.9e-11 Score=115.66 Aligned_cols=100 Identities=20% Similarity=0.118 Sum_probs=83.8
Q ss_pred CCCEEEEECCcccHHHHHHHHc--CCCeEEEEech-HHHHHHHHHHHHcCCCCc-EEEEEcccccCC---CCCcccEEEE
Q 016351 78 QGKTVLDVGTGSGILAIWSAQA--GARKVYAVEAT-KMSDHARTLVKANNLQDV-VEVIEGSVEDIV---LPEKVDVIIS 150 (391)
Q Consensus 78 ~~~~VLDlGcGtG~l~~~~a~~--g~~~V~avD~s-~~~~~a~~~~~~~~~~~~-v~~i~~d~~~~~---~~~~~D~Ivs 150 (391)
++.+|||++||+|.+++.+++. |+++|+++|++ .+++.++++++.|++.++ ++++++|+.++. ..++||+|+.
T Consensus 52 ~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~~~~fD~V~l 131 (392)
T 3axs_A 52 RPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEWGFGFDYVDL 131 (392)
T ss_dssp SCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSCCSSCEEEEEE
T ss_pred CCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHhhCCCCcEEEE
Confidence 5689999999999999999984 66799999999 899999999999999887 999999987752 2468999999
Q ss_pred ccccccccCcchHHHHHHHHhccccCCeEEEccc
Q 016351 151 EWMGYFLLRESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 151 e~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~ 184 (391)
++.+ ....+++.+.++|++||+++.+.
T Consensus 132 DP~g-------~~~~~l~~a~~~Lk~gGll~~t~ 158 (392)
T 3axs_A 132 DPFG-------TPVPFIESVALSMKRGGILSLTA 158 (392)
T ss_dssp CCSS-------CCHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCc-------CHHHHHHHHHHHhCCCCEEEEEe
Confidence 8821 12357778888899999776543
|
| >2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=9e-12 Score=114.92 Aligned_cols=103 Identities=17% Similarity=0.148 Sum_probs=71.9
Q ss_pred CCCCCEEEEECCcccHHHHHHHHcCCCeEEEEechHHHHHHHHHH-HHcCCCCcEEEE--EcccccCCCCCcccEEEEcc
Q 016351 76 HFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEATKMSDHARTLV-KANNLQDVVEVI--EGSVEDIVLPEKVDVIISEW 152 (391)
Q Consensus 76 ~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s~~~~~a~~~~-~~~~~~~~v~~i--~~d~~~~~~~~~~D~Ivse~ 152 (391)
..++.+|||||||+|.++..+++. .+|+|||+++|+..+++.. .......+++++ ++|+.+++ +++||+|+|+.
T Consensus 80 ~~~g~~VLDlGcGtG~~s~~la~~--~~V~gVD~s~m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~-~~~fD~Vvsd~ 156 (276)
T 2wa2_A 80 VELKGTVVDLGCGRGSWSYYAASQ--PNVREVKAYTLGTSGHEKPRLVETFGWNLITFKSKVDVTKME-PFQADTVLCDI 156 (276)
T ss_dssp CCCCEEEEEESCTTCHHHHHHHTS--TTEEEEEEECCCCTTSCCCCCCCCTTGGGEEEECSCCGGGCC-CCCCSEEEECC
T ss_pred CCCCCEEEEeccCCCHHHHHHHHc--CCEEEEECchhhhhhhhchhhhhhcCCCeEEEeccCcHhhCC-CCCcCEEEECC
Confidence 346789999999999999999988 4799999997533222110 001111158999 99999876 57999999986
Q ss_pred ccccccCc-ch-H--HHHHHHHhccccCCe--EEEc
Q 016351 153 MGYFLLRE-SM-F--DSVICARDRWLKPTG--VMYP 182 (391)
Q Consensus 153 ~~~~~~~e-~~-l--~~~l~~~~~~L~~gG--~ii~ 182 (391)
. ...... .+ . ..++..+.++|+||| .++.
T Consensus 157 ~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~ 191 (276)
T 2wa2_A 157 G-ESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCV 191 (276)
T ss_dssp C-CCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEE
T ss_pred C-cCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEE
Confidence 5 322111 01 1 126788889999999 8875
|
| >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.15 E-value=1.7e-10 Score=113.98 Aligned_cols=112 Identities=16% Similarity=0.178 Sum_probs=88.0
Q ss_pred CCCCCCEEEEECCcccHHHHHHHHc-C-CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC--CC-CcccEE
Q 016351 75 HHFQGKTVLDVGTGSGILAIWSAQA-G-ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV--LP-EKVDVI 148 (391)
Q Consensus 75 ~~~~~~~VLDlGcGtG~l~~~~a~~-g-~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~--~~-~~~D~I 148 (391)
...++.+|||+|||+|..+..+++. + ..+|+|+|++ .+++.++++++.+|+.+ ++++++|+.++. ++ ++||+|
T Consensus 256 ~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~~-v~~~~~D~~~~~~~~~~~~fD~V 334 (450)
T 2yxl_A 256 DPKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIKI-VKPLVKDARKAPEIIGEEVADKV 334 (450)
T ss_dssp CCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCCS-EEEECSCTTCCSSSSCSSCEEEE
T ss_pred CCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCc-EEEEEcChhhcchhhccCCCCEE
Confidence 3457789999999999999999885 2 2589999999 89999999999999865 999999998875 44 689999
Q ss_pred EEccccccccC---c---------ch-------HHHHHHHHhccccCCeEEEccccee
Q 016351 149 ISEWMGYFLLR---E---------SM-------FDSVICARDRWLKPTGVMYPSHARM 187 (391)
Q Consensus 149 vse~~~~~~~~---e---------~~-------l~~~l~~~~~~L~~gG~ii~~~~~~ 187 (391)
++++..+.... . .. ...++..+.++|||||.++...+++
T Consensus 335 l~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs~ 392 (450)
T 2yxl_A 335 LLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCSI 392 (450)
T ss_dssp EEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCC
T ss_pred EEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 98754322110 0 01 1567889999999999998665543
|
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.15 E-value=8.4e-11 Score=102.52 Aligned_cols=94 Identities=19% Similarity=0.252 Sum_probs=69.4
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCCCeEEEEechHHHHHHHHHHHHcCCCCcEEEEEcccccCCC--------C----Cc
Q 016351 77 FQGKTVLDVGTGSGILAIWSAQAGARKVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVEDIVL--------P----EK 144 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~--------~----~~ 144 (391)
.++.+|||||||+|.++..+++.+. +|+|||++++. .+ .+++++++|+.+... + ++
T Consensus 24 ~~g~~VLDlG~G~G~~s~~la~~~~-~V~gvD~~~~~----------~~-~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~ 91 (191)
T 3dou_A 24 RKGDAVIEIGSSPGGWTQVLNSLAR-KIISIDLQEME----------EI-AGVRFIRCDIFKETIFDDIDRALREEGIEK 91 (191)
T ss_dssp CTTCEEEEESCTTCHHHHHHTTTCS-EEEEEESSCCC----------CC-TTCEEEECCTTSSSHHHHHHHHHHHHTCSS
T ss_pred CCCCEEEEEeecCCHHHHHHHHcCC-cEEEEeccccc----------cC-CCeEEEEccccCHHHHHHHHHHhhcccCCc
Confidence 4678999999999999999998844 89999999431 12 249999999988641 1 48
Q ss_pred ccEEEEccccccccCc--------chHHHHHHHHhccccCCeEEEc
Q 016351 145 VDVIISEWMGYFLLRE--------SMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 145 ~D~Ivse~~~~~~~~e--------~~l~~~l~~~~~~L~~gG~ii~ 182 (391)
||+|+|+......... .....++..+.++|+|||.++.
T Consensus 92 ~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~ 137 (191)
T 3dou_A 92 VDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLL 137 (191)
T ss_dssp EEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred ceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEE
Confidence 9999997632211110 1234667788899999999883
|
| >2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.14 E-value=1e-10 Score=109.31 Aligned_cols=81 Identities=22% Similarity=0.295 Sum_probs=64.4
Q ss_pred HHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEE
Q 016351 70 IFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVI 148 (391)
Q Consensus 70 i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~~D~I 148 (391)
+...+...++.+|||||||+|.++..+++.+. +|+|+|++ .+++.|+++++.+++. +++++++|+.++++ .+||+|
T Consensus 34 i~~~~~~~~~~~VLDiG~G~G~lt~~La~~~~-~v~~vDi~~~~~~~a~~~~~~~~~~-~v~~~~~D~~~~~~-~~~D~V 110 (299)
T 2h1r_A 34 IIYAAKIKSSDIVLEIGCGTGNLTVKLLPLAK-KVITIDIDSRMISEVKKRCLYEGYN-NLEVYEGDAIKTVF-PKFDVC 110 (299)
T ss_dssp HHHHHCCCTTCEEEEECCTTSTTHHHHTTTSS-EEEEECSCHHHHHHHHHHHHHTTCC-CEEC----CCSSCC-CCCSEE
T ss_pred HHHhcCCCCcCEEEEEcCcCcHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHHcCCC-ceEEEECchhhCCc-ccCCEE
Confidence 33334445778999999999999999998865 89999999 9999999999888874 49999999998765 489999
Q ss_pred EEccc
Q 016351 149 ISEWM 153 (391)
Q Consensus 149 vse~~ 153 (391)
++++.
T Consensus 111 v~n~p 115 (299)
T 2h1r_A 111 TANIP 115 (299)
T ss_dssp EEECC
T ss_pred EEcCC
Confidence 99864
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=99.13 E-value=7.4e-11 Score=112.69 Aligned_cols=111 Identities=17% Similarity=0.151 Sum_probs=81.2
Q ss_pred HHhcCCCCCCCEEEEECCcccHHHHHHHHcC-CCeEEEEechHHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEE
Q 016351 70 IFQNKHHFQGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVI 148 (391)
Q Consensus 70 i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g-~~~V~avD~s~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~~D~I 148 (391)
+...+...++.+|||||||+|.++..+++.. ..+++++|++.++. +++++..++.++|+++.+|+.+ +.| .||+|
T Consensus 176 ~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~--~~~~~~~~~~~~v~~~~~d~~~-~~p-~~D~v 251 (348)
T 3lst_A 176 LARAGDFPATGTVADVGGGRGGFLLTVLREHPGLQGVLLDRAEVVA--RHRLDAPDVAGRWKVVEGDFLR-EVP-HADVH 251 (348)
T ss_dssp HHHHSCCCSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEECHHHHT--TCCCCCGGGTTSEEEEECCTTT-CCC-CCSEE
T ss_pred HHHhCCccCCceEEEECCccCHHHHHHHHHCCCCEEEEecCHHHhh--cccccccCCCCCeEEEecCCCC-CCC-CCcEE
Confidence 4444444567899999999999999998864 33789999985544 3334445666779999999973 445 89999
Q ss_pred EEccccccccCcchHHHHHHHHhccccCCeEEEcccc
Q 016351 149 ISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 149 vse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~~ 185 (391)
++..+.+.+..+ ....+++++++.|||||++++...
T Consensus 252 ~~~~vlh~~~d~-~~~~~L~~~~~~LkpgG~l~i~e~ 287 (348)
T 3lst_A 252 VLKRILHNWGDE-DSVRILTNCRRVMPAHGRVLVIDA 287 (348)
T ss_dssp EEESCGGGSCHH-HHHHHHHHHHHTCCTTCEEEEEEC
T ss_pred EEehhccCCCHH-HHHHHHHHHHHhcCCCCEEEEEEe
Confidence 985544443322 236789999999999999986543
|
| >3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=1e-10 Score=111.82 Aligned_cols=105 Identities=16% Similarity=0.208 Sum_probs=75.5
Q ss_pred HHHHHHHHhcCCCCCCCEEEEECCc------ccHHHHHHHHc--CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEc
Q 016351 64 DAYFNSIFQNKHHFQGKTVLDVGTG------SGILAIWSAQA--GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEG 134 (391)
Q Consensus 64 ~~~~~~i~~~~~~~~~~~VLDlGcG------tG~l~~~~a~~--g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~ 134 (391)
..|.+.+.... .++.+||||||| +|..++.+++. ...+|+|||+| .|. . ...+|+++++
T Consensus 204 ~~Ye~lL~~l~--~~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~--------~--~~~rI~fv~G 271 (419)
T 3sso_A 204 PHYDRHFRDYR--NQQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH--------V--DELRIRTIQG 271 (419)
T ss_dssp HHHHHHHGGGT--TSCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG--------G--CBTTEEEEEC
T ss_pred HHHHHHHHhhc--CCCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh--------h--cCCCcEEEEe
Confidence 44444444432 356899999999 66666666654 34489999999 762 1 1245999999
Q ss_pred ccccCCCC-------CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEccc
Q 016351 135 SVEDIVLP-------EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 135 d~~~~~~~-------~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~ 184 (391)
|+.++++. ++||+|+|+...+ .......+.++.++|||||++++..
T Consensus 272 Da~dlpf~~~l~~~d~sFDlVisdgsH~----~~d~~~aL~el~rvLKPGGvlVi~D 324 (419)
T 3sso_A 272 DQNDAEFLDRIARRYGPFDIVIDDGSHI----NAHVRTSFAALFPHVRPGGLYVIED 324 (419)
T ss_dssp CTTCHHHHHHHHHHHCCEEEEEECSCCC----HHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred cccccchhhhhhcccCCccEEEECCccc----chhHHHHHHHHHHhcCCCeEEEEEe
Confidence 99986543 7899999975322 1346778999999999999998754
|
| >4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=4.7e-11 Score=121.42 Aligned_cols=99 Identities=19% Similarity=0.241 Sum_probs=73.9
Q ss_pred CCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccC--CC-CCcccEEEE-cc
Q 016351 78 QGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDI--VL-PEKVDVIIS-EW 152 (391)
Q Consensus 78 ~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~--~~-~~~~D~Ivs-e~ 152 (391)
++.+|||||||.|+++..+|+.|+ .|+|||.+ .+++.|+..+..++.-+ |++.+++++++ .. +++||+|+| +.
T Consensus 66 ~~~~vLDvGCG~G~~~~~la~~ga-~V~giD~~~~~i~~a~~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~fD~v~~~e~ 143 (569)
T 4azs_A 66 RPLNVLDLGCAQGFFSLSLASKGA-TIVGIDFQQENINVCRALAEENPDFA-AEFRVGRIEEVIAALEEGEFDLAIGLSV 143 (569)
T ss_dssp SCCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTSTTSE-EEEEECCHHHHHHHCCTTSCSEEEEESC
T ss_pred CCCeEEEECCCCcHHHHHHHhCCC-EEEEECCCHHHHHHHHHHHHhcCCCc-eEEEECCHHHHhhhccCCCccEEEECcc
Confidence 457999999999999999999999 79999999 99999999998887433 99999999987 33 378999999 44
Q ss_pred ccccccCcchHHHHHHHHhccccCCeEE
Q 016351 153 MGYFLLRESMFDSVICARDRWLKPTGVM 180 (391)
Q Consensus 153 ~~~~~~~e~~l~~~l~~~~~~L~~gG~i 180 (391)
+.+. .....+.. +.++.+.|+++|..
T Consensus 144 ~ehv-~~~~~~~~-~~~~~~tl~~~~~~ 169 (569)
T 4azs_A 144 FHHI-VHLHGIDE-VKRLLSRLADVTQA 169 (569)
T ss_dssp HHHH-HHHHCHHH-HHHHHHHHHHHSSE
T ss_pred hhcC-CCHHHHHH-HHHHHHHhccccce
Confidence 3333 22211222 22344556666543
|
| >2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A | Back alignment and structure |
|---|
Probab=99.12 E-value=5.1e-11 Score=109.12 Aligned_cols=95 Identities=20% Similarity=0.034 Sum_probs=76.8
Q ss_pred CCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHH--cCC-CCcEEEEEcccccCCCCCcccEEEEccc
Q 016351 78 QGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKA--NNL-QDVVEVIEGSVEDIVLPEKVDVIISEWM 153 (391)
Q Consensus 78 ~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~--~~~-~~~v~~i~~d~~~~~~~~~~D~Ivse~~ 153 (391)
.+++|||||||+|.++..+++.+ .+|+++|++ .+++.|++++.. +++ ..+++++.+|..++. ++||+|+++..
T Consensus 72 ~~~~VL~iG~G~G~~~~~ll~~~-~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~--~~fD~Ii~d~~ 148 (262)
T 2cmg_A 72 ELKEVLIVDGFDLELAHQLFKYD-THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDI--KKYDLIFCLQE 148 (262)
T ss_dssp CCCEEEEESSCCHHHHHHHTTSS-CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCC--CCEEEEEESSC
T ss_pred CCCEEEEEeCCcCHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHH--hhCCEEEECCC
Confidence 45899999999999999888887 799999999 899999876532 122 246999999998865 78999998742
Q ss_pred cccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 154 GYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 154 ~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
. ...++..+.+.|+|||+++..
T Consensus 149 d--------p~~~~~~~~~~L~pgG~lv~~ 170 (262)
T 2cmg_A 149 P--------DIHRIDGLKRMLKEDGVFISV 170 (262)
T ss_dssp C--------CHHHHHHHHTTEEEEEEEEEE
T ss_pred C--------hHHHHHHHHHhcCCCcEEEEE
Confidence 1 123788999999999999864
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=99.12 E-value=1.1e-10 Score=107.09 Aligned_cols=91 Identities=20% Similarity=0.226 Sum_probs=73.2
Q ss_pred CCCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-CcccEEEEccc
Q 016351 77 FQGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIISEWM 153 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~-~~~D~Ivse~~ 153 (391)
.++.+|||||||+|.++..+++. +..+|+|+|++ .+++.|+++. .++.++.+|+.+++++ ++||+|++...
T Consensus 84 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~------~~~~~~~~d~~~~~~~~~~fD~v~~~~~ 157 (269)
T 1p91_A 84 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY------PQVTFCVASSHRLPFSDTSMDAIIRIYA 157 (269)
T ss_dssp TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC------TTSEEEECCTTSCSBCTTCEEEEEEESC
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhC------CCcEEEEcchhhCCCCCCceeEEEEeCC
Confidence 46789999999999999999987 23489999999 8999887764 2389999999887765 78999998332
Q ss_pred cccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 154 GYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 154 ~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
...+..+.++|+|||.++..
T Consensus 158 ----------~~~l~~~~~~L~pgG~l~~~ 177 (269)
T 1p91_A 158 ----------PCKAEELARVVKPGGWVITA 177 (269)
T ss_dssp ----------CCCHHHHHHHEEEEEEEEEE
T ss_pred ----------hhhHHHHHHhcCCCcEEEEE
Confidence 12367788999999998854
|
| >1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=4.3e-10 Score=110.54 Aligned_cols=112 Identities=19% Similarity=0.182 Sum_probs=84.1
Q ss_pred HHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC-
Q 016351 63 MDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV- 140 (391)
Q Consensus 63 ~~~~~~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~- 140 (391)
++.+.+.+...+...++.+|||+|||+|.+++.+++.+ .+|+|+|+| .+++.|+++++.+++. +++|+++|+.+..
T Consensus 271 ~e~l~~~~~~~l~~~~~~~VLDlgcG~G~~~~~la~~~-~~V~gvD~s~~al~~A~~n~~~~~~~-~v~f~~~d~~~~l~ 348 (433)
T 1uwv_A 271 NQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQA-ASVVGVEGVPALVEKGQQNARLNGLQ-NVTFYHENLEEDVT 348 (433)
T ss_dssp HHHHHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTTS-SEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEECCTTSCCS
T ss_pred HHHHHHHHHHhhcCCCCCEEEECCCCCCHHHHHHHhhC-CEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEECCHHHHhh
Confidence 44455555555544567899999999999999999884 489999999 9999999999999987 4999999998832
Q ss_pred ---CC-CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 141 ---LP-EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 141 ---~~-~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
++ ++||+|++++.-... ..++..+.+ ++|+++++.+
T Consensus 349 ~~~~~~~~fD~Vv~dPPr~g~------~~~~~~l~~-~~p~~ivyvs 388 (433)
T 1uwv_A 349 KQPWAKNGFDKVLLDPARAGA------AGVMQQIIK-LEPIRIVYVS 388 (433)
T ss_dssp SSGGGTTCCSEEEECCCTTCC------HHHHHHHHH-HCCSEEEEEE
T ss_pred hhhhhcCCCCEEEECCCCccH------HHHHHHHHh-cCCCeEEEEE
Confidence 22 589999998743322 123444433 6888877654
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=1.3e-10 Score=98.79 Aligned_cols=96 Identities=20% Similarity=0.287 Sum_probs=72.2
Q ss_pred CCCCCEEEEECCcccHHHHHHHHc-CC-CeEEEEechHHHHHHHHHHHHcCCCCcEEEEEcccccCC--------CC-Cc
Q 016351 76 HFQGKTVLDVGTGSGILAIWSAQA-GA-RKVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVEDIV--------LP-EK 144 (391)
Q Consensus 76 ~~~~~~VLDlGcGtG~l~~~~a~~-g~-~~V~avD~s~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~--------~~-~~ 144 (391)
..++.+|||+|||+|.++..+++. |. .+|+++|+++++.. .+++++.+|+.+.+ ++ ++
T Consensus 20 ~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~-----------~~~~~~~~d~~~~~~~~~~~~~~~~~~ 88 (180)
T 1ej0_A 20 FKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMDPI-----------VGVDFLQGDFRDELVMKALLERVGDSK 88 (180)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCCCCC-----------TTEEEEESCTTSHHHHHHHHHHHTTCC
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcccccc-----------CcEEEEEcccccchhhhhhhccCCCCc
Confidence 456789999999999999999887 54 58999999963211 34999999998864 44 78
Q ss_pred ccEEEEccccccccCc--c------hHHHHHHHHhccccCCeEEEc
Q 016351 145 VDVIISEWMGYFLLRE--S------MFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 145 ~D~Ivse~~~~~~~~e--~------~l~~~l~~~~~~L~~gG~ii~ 182 (391)
||+|+++...+..... . ....++..+.++|+|||.++.
T Consensus 89 ~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~ 134 (180)
T 1ej0_A 89 VQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVV 134 (180)
T ss_dssp EEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred eeEEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEE
Confidence 9999996543322211 0 015778889999999999885
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.11 E-value=1.6e-10 Score=102.31 Aligned_cols=84 Identities=21% Similarity=0.175 Sum_probs=67.8
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-CcccEEEEcccc
Q 016351 77 FQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIISEWMG 154 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~-~~~D~Ivse~~~ 154 (391)
.++.+|||||||+|.++..++ .+|+++|++ . +++++.+|+.+++++ ++||+|++..+.
T Consensus 66 ~~~~~vLDiG~G~G~~~~~l~----~~v~~~D~s~~----------------~~~~~~~d~~~~~~~~~~fD~v~~~~~l 125 (215)
T 2zfu_A 66 PASLVVADFGCGDCRLASSIR----NPVHCFDLASL----------------DPRVTVCDMAQVPLEDESVDVAVFCLSL 125 (215)
T ss_dssp CTTSCEEEETCTTCHHHHHCC----SCEEEEESSCS----------------STTEEESCTTSCSCCTTCEEEEEEESCC
T ss_pred CCCCeEEEECCcCCHHHHHhh----ccEEEEeCCCC----------------CceEEEeccccCCCCCCCEeEEEEehhc
Confidence 456789999999999987763 479999999 5 278899999988765 789999984432
Q ss_pred ccccCcchHHHHHHHHhccccCCeEEEccc
Q 016351 155 YFLLRESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 155 ~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~ 184 (391)
+ . .....++..+.++|+|||.+++..
T Consensus 126 ~---~-~~~~~~l~~~~~~L~~gG~l~i~~ 151 (215)
T 2zfu_A 126 M---G-TNIRDFLEEANRVLKPGGLLKVAE 151 (215)
T ss_dssp C---S-SCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred c---c-cCHHHHHHHHHHhCCCCeEEEEEE
Confidence 2 2 457788999999999999988653
|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.10 E-value=1.6e-10 Score=101.05 Aligned_cols=95 Identities=18% Similarity=0.202 Sum_probs=69.7
Q ss_pred CCCCEEEEECCcccHHHHHHHHc-C--CCeEEEEechHHHHHHHHHHHHcCCCCcEEEEEcccccCC-------------
Q 016351 77 FQGKTVLDVGTGSGILAIWSAQA-G--ARKVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVEDIV------------- 140 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~l~~~~a~~-g--~~~V~avD~s~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~------------- 140 (391)
.++.+|||||||+|.++..+++. + ..+|+|+|++++. .. .+++++++|+.+..
T Consensus 21 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~----------~~-~~v~~~~~d~~~~~~~~~~~~~~i~~~ 89 (201)
T 2plw_A 21 KKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD----------PI-PNVYFIQGEIGKDNMNNIKNINYIDNM 89 (201)
T ss_dssp CTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC----------CC-TTCEEEECCTTTTSSCCC---------
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC----------CC-CCceEEEccccchhhhhhccccccccc
Confidence 45689999999999999999986 3 3589999999631 12 24899999998865
Q ss_pred ------------CC-CcccEEEEccccccccC-cch-------HHHHHHHHhccccCCeEEEc
Q 016351 141 ------------LP-EKVDVIISEWMGYFLLR-ESM-------FDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 141 ------------~~-~~~D~Ivse~~~~~~~~-e~~-------l~~~l~~~~~~L~~gG~ii~ 182 (391)
++ ++||+|+|+...+.... ..+ ...++..+.++|+|||.++.
T Consensus 90 ~~~~~~~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~ 152 (201)
T 2plw_A 90 NNNSVDYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIV 152 (201)
T ss_dssp --CHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred cchhhHHHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEE
Confidence 34 68999999754322110 001 12467888999999999885
|
| >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=3.1e-11 Score=112.99 Aligned_cols=100 Identities=17% Similarity=0.213 Sum_probs=69.3
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCCCeEEEEec----h-HHHHHHHHHHHHcCCCCcEEEEEc-ccccCCCCCcccEEEE
Q 016351 77 FQGKTVLDVGTGSGILAIWSAQAGARKVYAVEA----T-KMSDHARTLVKANNLQDVVEVIEG-SVEDIVLPEKVDVIIS 150 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~----s-~~~~~a~~~~~~~~~~~~v~~i~~-d~~~~~~~~~~D~Ivs 150 (391)
.++.+|||||||+|.++..+++. .+|+|||+ + .+++.++ .+..+. ++|+++++ |+.+++ +++||+|+|
T Consensus 81 ~~g~~VLDlGcG~G~~s~~la~~--~~V~gvD~~~~~~~~~~~~~~--~~~~~~-~~v~~~~~~D~~~l~-~~~fD~V~s 154 (305)
T 2p41_A 81 TPEGKVVDLGCGRGGWSYYCGGL--KNVREVKGLTKGGPGHEEPIP--MSTYGW-NLVRLQSGVDVFFIP-PERCDTLLC 154 (305)
T ss_dssp CCCEEEEEETCTTSHHHHHHHTS--TTEEEEEEECCCSTTSCCCCC--CCSTTG-GGEEEECSCCTTTSC-CCCCSEEEE
T ss_pred CCCCEEEEEcCCCCHHHHHHHhc--CCEEEEeccccCchhHHHHHH--hhhcCC-CCeEEEeccccccCC-cCCCCEEEE
Confidence 45689999999999999999988 37999999 4 4332111 111111 35999999 888764 478999999
Q ss_pred ccccccccCcch---HHHHHHHHhccccCCeEEEc
Q 016351 151 EWMGYFLLRESM---FDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 151 e~~~~~~~~e~~---l~~~l~~~~~~L~~gG~ii~ 182 (391)
+..........+ ...++..+.++|+|||.++.
T Consensus 155 d~~~~~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~ 189 (305)
T 2p41_A 155 DIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCV 189 (305)
T ss_dssp CCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEE
T ss_pred CCccccCcchhhHHHHHHHHHHHHHHhCCCCEEEE
Confidence 865331111111 11467778899999998875
|
| >1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A | Back alignment and structure |
|---|
Probab=99.10 E-value=2.6e-10 Score=111.94 Aligned_cols=112 Identities=15% Similarity=0.089 Sum_probs=87.8
Q ss_pred CCCCCCEEEEECCcccHHHHHHHHcCC-CeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC--CC-CcccEEE
Q 016351 75 HHFQGKTVLDVGTGSGILAIWSAQAGA-RKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV--LP-EKVDVII 149 (391)
Q Consensus 75 ~~~~~~~VLDlGcGtG~l~~~~a~~g~-~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~--~~-~~~D~Iv 149 (391)
...++.+|||+|||+|..+..+++.+. .+|+|+|++ .+++.++++++.+++. ++++++|+.++. ++ ++||+|+
T Consensus 243 ~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~~--~~~~~~D~~~~~~~~~~~~fD~Vl 320 (429)
T 1sqg_A 243 APQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMK--ATVKQGDGRYPSQWCGEQQFDRIL 320 (429)
T ss_dssp CCCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCC--CEEEECCTTCTHHHHTTCCEEEEE
T ss_pred CCCCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCCC--eEEEeCchhhchhhcccCCCCEEE
Confidence 345778999999999999999998743 589999999 8999999999999884 799999998865 33 6899999
Q ss_pred Ecccccccc---Cc---------ch-------HHHHHHHHhccccCCeEEEcccceeE
Q 016351 150 SEWMGYFLL---RE---------SM-------FDSVICARDRWLKPTGVMYPSHARMW 188 (391)
Q Consensus 150 se~~~~~~~---~e---------~~-------l~~~l~~~~~~L~~gG~ii~~~~~~~ 188 (391)
+++..+... .. .. ...++..+.++|||||+++.+.+++.
T Consensus 321 ~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystcs~~ 378 (429)
T 1sqg_A 321 LDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVL 378 (429)
T ss_dssp EECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCC
T ss_pred EeCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCC
Confidence 876432211 00 11 14778889999999999997765443
|
| >2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=1.9e-10 Score=110.79 Aligned_cols=98 Identities=17% Similarity=0.132 Sum_probs=82.2
Q ss_pred CCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHc---------------CCCCcEEEEEcccccCC
Q 016351 78 QGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKAN---------------NLQDVVEVIEGSVEDIV 140 (391)
Q Consensus 78 ~~~~VLDlGcGtG~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~---------------~~~~~v~~i~~d~~~~~ 140 (391)
++.+|||+|||+|.+++.+++. ++.+|+++|++ .+++.|+++++.| ++.+ ++++++|+.++.
T Consensus 47 ~~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~-i~v~~~Da~~~~ 125 (378)
T 2dul_A 47 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKT-IVINHDDANRLM 125 (378)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSE-EEEEESCHHHHH
T ss_pred CCCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCc-eEEEcCcHHHHH
Confidence 5789999999999999999987 66689999999 9999999999999 8866 999999998753
Q ss_pred --CCCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 141 --LPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 141 --~~~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
..++||+|+.++.+. ...+++.+.+.|++||+++..
T Consensus 126 ~~~~~~fD~I~lDP~~~-------~~~~l~~a~~~lk~gG~l~vt 163 (378)
T 2dul_A 126 AERHRYFHFIDLDPFGS-------PMEFLDTALRSAKRRGILGVT 163 (378)
T ss_dssp HHSTTCEEEEEECCSSC-------CHHHHHHHHHHEEEEEEEEEE
T ss_pred HhccCCCCEEEeCCCCC-------HHHHHHHHHHhcCCCCEEEEE
Confidence 235899999877422 246778888899999987654
|
| >3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=4.1e-10 Score=102.73 Aligned_cols=122 Identities=15% Similarity=0.107 Sum_probs=83.4
Q ss_pred HHHHHHHHHhcCC-CCCCCEEEEECCcc---cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEccc
Q 016351 63 MDAYFNSIFQNKH-HFQGKTVLDVGTGS---GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSV 136 (391)
Q Consensus 63 ~~~~~~~i~~~~~-~~~~~~VLDlGcGt---G~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~ 136 (391)
+..|.....+.+. ......|||||||+ |.+...+.+. ...+|++||.| .|++.|++++...+ ..+++++++|+
T Consensus 62 nr~fl~rav~~l~~~~g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~-~~~~~~v~aD~ 140 (277)
T 3giw_A 62 NRDWMNRAVAHLAKEAGIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTP-EGRTAYVEADM 140 (277)
T ss_dssp HHHHHHHHHHHHHHTSCCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCS-SSEEEEEECCT
T ss_pred HHHHHHHHHHHhccccCCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCC-CCcEEEEEecc
Confidence 3444443333332 22337899999996 4454444443 34489999999 99999999886543 24599999999
Q ss_pred ccCCC-------CCccc-----EEEEccccccccCcchHHHHHHHHhccccCCeEEEcccc
Q 016351 137 EDIVL-------PEKVD-----VIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 137 ~~~~~-------~~~~D-----~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~~ 185 (391)
+++.. .+.|| .|+++.+.+++..+.....++..+.+.|+|||+++++..
T Consensus 141 ~~~~~~l~~~~~~~~~D~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~PGG~Lvls~~ 201 (277)
T 3giw_A 141 LDPASILDAPELRDTLDLTRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPSGSYLAMSIG 201 (277)
T ss_dssp TCHHHHHTCHHHHTTCCTTSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCTTCEEEEEEE
T ss_pred cChhhhhcccccccccCcCCcchHHhhhhHhcCCchhhHHHHHHHHHHhCCCCcEEEEEec
Confidence 88520 12344 566766666666554467889999999999999987643
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.04 E-value=4.7e-10 Score=97.58 Aligned_cols=96 Identities=23% Similarity=0.250 Sum_probs=69.3
Q ss_pred CCCCEEEEECCcccHHHHHHHHc-CC---------CeEEEEechHHHHHHHHHHHHcCCCCcEEEE-EcccccCC-----
Q 016351 77 FQGKTVLDVGTGSGILAIWSAQA-GA---------RKVYAVEATKMSDHARTLVKANNLQDVVEVI-EGSVEDIV----- 140 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~l~~~~a~~-g~---------~~V~avD~s~~~~~a~~~~~~~~~~~~v~~i-~~d~~~~~----- 140 (391)
.++.+|||||||+|.++..+++. +. .+|+|+|++++. .+ .+++++ .+|+.+..
T Consensus 21 ~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~----------~~-~~~~~~~~~d~~~~~~~~~~ 89 (196)
T 2nyu_A 21 RPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF----------PL-EGATFLCPADVTDPRTSQRI 89 (196)
T ss_dssp CTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC----------CC-TTCEEECSCCTTSHHHHHHH
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc----------cC-CCCeEEEeccCCCHHHHHHH
Confidence 46789999999999999999987 54 589999999521 12 238899 88877643
Q ss_pred ---CC-CcccEEEEccccccccCc-ch-------HHHHHHHHhccccCCeEEEcc
Q 016351 141 ---LP-EKVDVIISEWMGYFLLRE-SM-------FDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 141 ---~~-~~~D~Ivse~~~~~~~~e-~~-------l~~~l~~~~~~L~~gG~ii~~ 183 (391)
++ ++||+|+|+...+..... .+ ...++..+.++|+|||.++..
T Consensus 90 ~~~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~ 144 (196)
T 2nyu_A 90 LEVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCK 144 (196)
T ss_dssp HHHSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred HHhcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEE
Confidence 22 589999996532221111 11 146788899999999999854
|
| >3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=1.1e-09 Score=101.69 Aligned_cols=84 Identities=23% Similarity=0.359 Sum_probs=69.2
Q ss_pred HHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-C
Q 016351 66 YFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-E 143 (391)
Q Consensus 66 ~~~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~-~ 143 (391)
..+.|.+.+...++.+|||||||+|.++..+++.+. +|+|||++ .+++.+++++... ++++++++|+.++.++ .
T Consensus 38 i~~~Iv~~l~~~~~~~VLEIG~G~G~lT~~La~~~~-~V~aVEid~~li~~a~~~~~~~---~~v~vi~gD~l~~~~~~~ 113 (295)
T 3gru_A 38 FVNKAVESANLTKDDVVLEIGLGKGILTEELAKNAK-KVYVIEIDKSLEPYANKLKELY---NNIEIIWGDALKVDLNKL 113 (295)
T ss_dssp HHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHSS-EEEEEESCGGGHHHHHHHHHHC---SSEEEEESCTTTSCGGGS
T ss_pred HHHHHHHhcCCCCcCEEEEECCCchHHHHHHHhcCC-EEEEEECCHHHHHHHHHHhccC---CCeEEEECchhhCCcccC
Confidence 344455555566788999999999999999999865 89999999 9999999988732 3499999999998766 5
Q ss_pred cccEEEEccc
Q 016351 144 KVDVIISEWM 153 (391)
Q Consensus 144 ~~D~Ivse~~ 153 (391)
+||+|++++.
T Consensus 114 ~fD~Iv~NlP 123 (295)
T 3gru_A 114 DFNKVVANLP 123 (295)
T ss_dssp CCSEEEEECC
T ss_pred CccEEEEeCc
Confidence 7999998753
|
| >2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=99.01 E-value=3.2e-09 Score=99.36 Aligned_cols=112 Identities=14% Similarity=0.079 Sum_probs=84.0
Q ss_pred CCCCCCEEEEECCcccHHHHHHHHc--CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC----CcccE
Q 016351 75 HHFQGKTVLDVGTGSGILAIWSAQA--GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP----EKVDV 147 (391)
Q Consensus 75 ~~~~~~~VLDlGcGtG~l~~~~a~~--g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~----~~~D~ 147 (391)
...++.+|||+|||+|..+..+++. +..+|+|+|++ .+++.++++++.+|+.+ |+++++|+.++... .+||.
T Consensus 99 ~~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~~~-v~~~~~D~~~~~~~~~~~~~fD~ 177 (309)
T 2b9e_A 99 DPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSC-CELAEEDFLAVSPSDPRYHEVHY 177 (309)
T ss_dssp CCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCS-EEEEECCGGGSCTTCGGGTTEEE
T ss_pred CCCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCe-EEEEeCChHhcCccccccCCCCE
Confidence 3457889999999999999998885 34589999999 89999999999999865 99999999887532 47999
Q ss_pred EEEccccccccC--------------cch-------HHHHHHHHhccccCCeEEEcccceeE
Q 016351 148 IISEWMGYFLLR--------------ESM-------FDSVICARDRWLKPTGVMYPSHARMW 188 (391)
Q Consensus 148 Ivse~~~~~~~~--------------e~~-------l~~~l~~~~~~L~~gG~ii~~~~~~~ 188 (391)
|++++....... ... ...++..+.++|+ ||+++.+.+++.
T Consensus 178 Vl~D~PcSg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~lvYsTCs~~ 238 (309)
T 2b9e_A 178 ILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPS-LQRLVYSTCSLC 238 (309)
T ss_dssp EEECCCCCC------------------CCHHHHHHHHHHHHHHHTTCTT-CCEEEEEESCCC
T ss_pred EEEcCCcCCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhccC-CCEEEEECCCCC
Confidence 999754221100 011 1246777778886 898886655443
|
| >3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.01 E-value=6.5e-10 Score=106.95 Aligned_cols=108 Identities=13% Similarity=0.127 Sum_probs=77.7
Q ss_pred HHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC--
Q 016351 64 DAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV-- 140 (391)
Q Consensus 64 ~~~~~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~-- 140 (391)
+.+...+.+.+.. .+.+|||+|||+|.+++.+|+. +.+|+|+|++ .+++.|+++++.|++. +++++.+|+.++.
T Consensus 200 ~~l~~~~~~~~~~-~~~~vLDl~cG~G~~~l~la~~-~~~V~gvd~~~~ai~~a~~n~~~ng~~-~v~~~~~d~~~~~~~ 276 (369)
T 3bt7_A 200 IQMLEWALDVTKG-SKGDLLELYCGNGNFSLALARN-FDRVLATEIAKPSVAAAQYNIAANHID-NVQIIRMAAEEFTQA 276 (369)
T ss_dssp HHHHHHHHHHTTT-CCSEEEEESCTTSHHHHHHGGG-SSEEEEECCCHHHHHHHHHHHHHTTCC-SEEEECCCSHHHHHH
T ss_pred HHHHHHHHHHhhc-CCCEEEEccCCCCHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHHcCCC-ceEEEECCHHHHHHH
Confidence 3334444444332 3578999999999999999875 4589999999 9999999999999995 4999999987752
Q ss_pred CC---------------CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 141 LP---------------EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 141 ~~---------------~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
+. .+||+|+.++.-.. ....+ .+.|+++|.++..
T Consensus 277 ~~~~~~~~~l~~~~~~~~~fD~Vv~dPPr~g-----~~~~~----~~~l~~~g~ivyv 325 (369)
T 3bt7_A 277 MNGVREFNRLQGIDLKSYQCETIFVDPPRSG-----LDSET----EKMVQAYPRILYI 325 (369)
T ss_dssp HSSCCCCTTGGGSCGGGCCEEEEEECCCTTC-----CCHHH----HHHHTTSSEEEEE
T ss_pred HhhccccccccccccccCCCCEEEECcCccc-----cHHHH----HHHHhCCCEEEEE
Confidence 11 27999999874321 12223 3445677777644
|
| >4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=2.1e-09 Score=102.75 Aligned_cols=113 Identities=15% Similarity=0.072 Sum_probs=84.8
Q ss_pred HHHhcCCCCCCCEEEEECCcccHHHHHHHHcC-CCeEEEEechHHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccE
Q 016351 69 SIFQNKHHFQGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDV 147 (391)
Q Consensus 69 ~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g-~~~V~avD~s~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~~D~ 147 (391)
.+..........+|||||||+|.++..+++.. ..+++..|...+++.|++++...+ .++|+++.+|+.+.+. ..+|+
T Consensus 170 ~~~~~~~~~~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dlp~v~~~a~~~~~~~~-~~rv~~~~gD~~~~~~-~~~D~ 247 (353)
T 4a6d_A 170 SVLTAFDLSVFPLMCDLGGGAGALAKECMSLYPGCKITVFDIPEVVWTAKQHFSFQE-EEQIDFQEGDFFKDPL-PEADL 247 (353)
T ss_dssp HHHHSSCGGGCSEEEEETCTTSHHHHHHHHHCSSCEEEEEECHHHHHHHHHHSCC---CCSEEEEESCTTTSCC-CCCSE
T ss_pred HHHHhcCcccCCeEEeeCCCCCHHHHHHHHhCCCceeEeccCHHHHHHHHHhhhhcc-cCceeeecCccccCCC-CCceE
Confidence 34444444456899999999999999998873 336888888788999988876544 5679999999987544 46899
Q ss_pred EEEccccccccCcchHHHHHHHHhccccCCeEEEccc
Q 016351 148 IISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 148 Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~ 184 (391)
+++..+.+.+..+ ....+|+++++.|+|||.+++..
T Consensus 248 ~~~~~vlh~~~d~-~~~~iL~~~~~al~pgg~lli~e 283 (353)
T 4a6d_A 248 YILARVLHDWADG-KCSHLLERIYHTCKPGGGILVIE 283 (353)
T ss_dssp EEEESSGGGSCHH-HHHHHHHHHHHHCCTTCEEEEEE
T ss_pred EEeeeecccCCHH-HHHHHHHHHHhhCCCCCEEEEEE
Confidence 9986555554443 34678999999999999988654
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=1.3e-09 Score=104.80 Aligned_cols=99 Identities=19% Similarity=0.192 Sum_probs=75.7
Q ss_pred CCCCEEEEECCcccHHHHHHHHcC-CCeEEEEechHHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEccccc
Q 016351 77 FQGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMGY 155 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~l~~~~a~~g-~~~V~avD~s~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~~D~Ivse~~~~ 155 (391)
.+..+|||||||+|.++..+++.. ..+++++|+..+++.|++. .+|+++.+|+.+ +.|.. |+|++..+.+
T Consensus 202 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-------~~v~~~~~d~~~-~~p~~-D~v~~~~vlh 272 (368)
T 3reo_A 202 EGLTTIVDVGGGTGAVASMIVAKYPSINAINFDLPHVIQDAPAF-------SGVEHLGGDMFD-GVPKG-DAIFIKWICH 272 (368)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCC-------TTEEEEECCTTT-CCCCC-SEEEEESCGG
T ss_pred cCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEehHHHHHhhhhc-------CCCEEEecCCCC-CCCCC-CEEEEechhh
Confidence 345899999999999999998863 3479999997666655431 359999999987 55544 9999866555
Q ss_pred cccCcchHHHHHHHHhccccCCeEEEcccc
Q 016351 156 FLLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 156 ~~~~e~~l~~~l~~~~~~L~~gG~ii~~~~ 185 (391)
.+..+ ....+++++++.|+|||.+++...
T Consensus 273 ~~~~~-~~~~~l~~~~~~L~pgG~l~i~e~ 301 (368)
T 3reo_A 273 DWSDE-HCLKLLKNCYAALPDHGKVIVAEY 301 (368)
T ss_dssp GBCHH-HHHHHHHHHHHHSCTTCEEEEEEC
T ss_pred cCCHH-HHHHHHHHHHHHcCCCCEEEEEEe
Confidence 44433 356789999999999999886543
|
| >2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=1.1e-09 Score=101.22 Aligned_cols=109 Identities=13% Similarity=0.114 Sum_probs=74.1
Q ss_pred HhHHHHHHHHH-hcCCCCCCCEEEEECC------cccHHHHHHHHcC-CCeEEEEechHHHHHHHHHHHHcCCCCcEEE-
Q 016351 61 VRMDAYFNSIF-QNKHHFQGKTVLDVGT------GSGILAIWSAQAG-ARKVYAVEATKMSDHARTLVKANNLQDVVEV- 131 (391)
Q Consensus 61 ~r~~~~~~~i~-~~~~~~~~~~VLDlGc------GtG~l~~~~a~~g-~~~V~avD~s~~~~~a~~~~~~~~~~~~v~~- 131 (391)
.++..+.+.+. ..+...++.+|||||| |+|. ...+...+ ..+|+|+|+++. +. ++++
T Consensus 45 ~~y~~l~~~l~~~~l~l~~g~~VLDLGcGsg~~~GpGs-~~~a~~~~~~~~V~gvDis~~------------v~-~v~~~ 110 (290)
T 2xyq_A 45 AKYTQLCQYLNTLTLAVPYNMRVIHFGAGSDKGVAPGT-AVLRQWLPTGTLLVDSDLNDF------------VS-DADST 110 (290)
T ss_dssp HHHHHHHHHHTTSCCCCCTTCEEEEESCCCTTSBCHHH-HHHHHHSCTTCEEEEEESSCC------------BC-SSSEE
T ss_pred HHHHHHHHHHHHhhcCCCCCCEEEEeCCCCCCCCCcHH-HHHHHHcCCCCEEEEEECCCC------------CC-CCEEE
Confidence 44555555553 2334456789999999 4476 33333345 358999999943 12 3888
Q ss_pred EEcccccCCCCCcccEEEEccccccc-----c---CcchHHHHHHHHhccccCCeEEEcc
Q 016351 132 IEGSVEDIVLPEKVDVIISEWMGYFL-----L---RESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 132 i~~d~~~~~~~~~~D~Ivse~~~~~~-----~---~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
+++|+.++.++++||+|+|+...... . ....+..+++.+.++|||||.+++.
T Consensus 111 i~gD~~~~~~~~~fD~Vvsn~~~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~ 170 (290)
T 2xyq_A 111 LIGDCATVHTANKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVK 170 (290)
T ss_dssp EESCGGGCCCSSCEEEEEECCCCCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred EECccccCCccCcccEEEEcCCccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 99999998766889999997532211 1 1223457889999999999999864
|
| >2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=98.99 E-value=9.5e-10 Score=104.80 Aligned_cols=106 Identities=17% Similarity=0.128 Sum_probs=81.2
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCC------CeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEE
Q 016351 77 FQGKTVLDVGTGSGILAIWSAQAGA------RKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVII 149 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~l~~~~a~~g~------~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~~D~Iv 149 (391)
.++.+|||+|||+|.++..+++... .+|+|+|++ .+++.|+.++..+++. +.++++|.......++||+|+
T Consensus 129 ~~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~~--~~i~~~D~l~~~~~~~fD~Ii 206 (344)
T 2f8l_A 129 KKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQK--MTLLHQDGLANLLVDPVDVVI 206 (344)
T ss_dssp CSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCC--CEEEESCTTSCCCCCCEEEEE
T ss_pred CCCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCCC--ceEEECCCCCccccCCccEEE
Confidence 3567999999999999998887632 479999999 8999999999888873 899999987754457899999
Q ss_pred EccccccccCc--------------chH-HHHHHHHhccccCCeEEEccc
Q 016351 150 SEWMGYFLLRE--------------SMF-DSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 150 se~~~~~~~~e--------------~~l-~~~l~~~~~~L~~gG~ii~~~ 184 (391)
+++........ ... ..++..+.+.|+|||++++..
T Consensus 207 ~NPPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~ 256 (344)
T 2f8l_A 207 SDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLV 256 (344)
T ss_dssp EECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred ECCCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEE
Confidence 98652222111 011 257888889999999877543
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=1.8e-09 Score=103.74 Aligned_cols=106 Identities=17% Similarity=0.158 Sum_probs=79.0
Q ss_pred HHhcCC-CCCCCEEEEECCcccHHHHHHHHc-CCCeEEEEechHHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccE
Q 016351 70 IFQNKH-HFQGKTVLDVGTGSGILAIWSAQA-GARKVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDV 147 (391)
Q Consensus 70 i~~~~~-~~~~~~VLDlGcGtG~l~~~~a~~-g~~~V~avD~s~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~~D~ 147 (391)
+...+. ..+..+|||||||+|.++..+++. ...+++++|+..+++.|++. .+|+++.+|+.+ +.|.. |+
T Consensus 192 ~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-------~~v~~~~~D~~~-~~p~~-D~ 262 (364)
T 3p9c_A 192 LLELYHGFEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDLPHVISEAPQF-------PGVTHVGGDMFK-EVPSG-DT 262 (364)
T ss_dssp HHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCC-------TTEEEEECCTTT-CCCCC-SE
T ss_pred HHHhcccccCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecCHHHHHhhhhc-------CCeEEEeCCcCC-CCCCC-CE
Confidence 333343 345689999999999999999886 33479999997676665531 459999999987 66644 99
Q ss_pred EEEccccccccCcchHHHHHHHHhccccCCeEEEcccc
Q 016351 148 IISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 148 Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~~ 185 (391)
|++..+.+.+..+ ....+++++++.|+|||.+++...
T Consensus 263 v~~~~vlh~~~d~-~~~~~L~~~~~~L~pgG~l~i~e~ 299 (364)
T 3p9c_A 263 ILMKWILHDWSDQ-HCATLLKNCYDALPAHGKVVLVQC 299 (364)
T ss_dssp EEEESCGGGSCHH-HHHHHHHHHHHHSCTTCEEEEEEC
T ss_pred EEehHHhccCCHH-HHHHHHHHHHHHcCCCCEEEEEEe
Confidence 9986555544333 456789999999999999886543
|
| >2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=1.3e-09 Score=106.54 Aligned_cols=106 Identities=20% Similarity=0.125 Sum_probs=77.0
Q ss_pred HHHHhcCCCCCCCEEEEECCcccHHHHHHHHc--CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCc
Q 016351 68 NSIFQNKHHFQGKTVLDVGTGSGILAIWSAQA--GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEK 144 (391)
Q Consensus 68 ~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~--g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~ 144 (391)
+.+.+.+...++.+|||+|||+|.+++.+++. ...+|+|+|++ .+++.| .+++++++|+.+....++
T Consensus 29 ~~~~~~~~~~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a----------~~~~~~~~D~~~~~~~~~ 98 (421)
T 2ih2_A 29 DFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP----------PWAEGILADFLLWEPGEA 98 (421)
T ss_dssp HHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC----------TTEEEEESCGGGCCCSSC
T ss_pred HHHHHhhccCCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC----------CCCcEEeCChhhcCccCC
Confidence 33444444345679999999999999999875 34589999999 777665 349999999998765589
Q ss_pred ccEEEEccccccccC---------cc-----------------hHHHHHHHHhccccCCeEEEcc
Q 016351 145 VDVIISEWMGYFLLR---------ES-----------------MFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 145 ~D~Ivse~~~~~~~~---------e~-----------------~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
||+|++++.-..... +. ....++..+.++|+|||.++..
T Consensus 99 fD~Ii~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i 163 (421)
T 2ih2_A 99 FDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFV 163 (421)
T ss_dssp EEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCEEEECcCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEE
Confidence 999999864221111 10 1225678888999999987644
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=2.4e-09 Score=103.06 Aligned_cols=106 Identities=18% Similarity=0.133 Sum_probs=77.8
Q ss_pred HHhcCC-CCCCCEEEEECCcccHHHHHHHHcC-CCeEEEEechHHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccE
Q 016351 70 IFQNKH-HFQGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDV 147 (391)
Q Consensus 70 i~~~~~-~~~~~~VLDlGcGtG~l~~~~a~~g-~~~V~avD~s~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~~D~ 147 (391)
+...+. ..+..+|||||||+|.++..+++.+ ..+++++|+..+++.|++ . .+|+++.+|+.+ +++. +|+
T Consensus 200 l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~------~-~~v~~~~~d~~~-~~~~-~D~ 270 (372)
T 1fp1_D 200 MLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIENAPP------L-SGIEHVGGDMFA-SVPQ-GDA 270 (372)
T ss_dssp HHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCC------C-TTEEEEECCTTT-CCCC-EEE
T ss_pred HHHHhhccCCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeChHHHHHhhhh------c-CCCEEEeCCccc-CCCC-CCE
Confidence 334443 3456899999999999999999875 337888999767766653 1 249999999987 5555 999
Q ss_pred EEEccccccccCcchHHHHHHHHhccccCCeEEEcccc
Q 016351 148 IISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 148 Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~~ 185 (391)
|++..+.+.+..+ ....++++++++|+|||.+++...
T Consensus 271 v~~~~~lh~~~d~-~~~~~l~~~~~~L~pgG~l~i~e~ 307 (372)
T 1fp1_D 271 MILKAVCHNWSDE-KCIEFLSNCHKALSPNGKVIIVEF 307 (372)
T ss_dssp EEEESSGGGSCHH-HHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EEEecccccCCHH-HHHHHHHHHHHhcCCCCEEEEEEe
Confidence 9985544433322 234789999999999999887643
|
| >3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.92 E-value=2.4e-09 Score=97.49 Aligned_cols=81 Identities=12% Similarity=0.229 Sum_probs=65.0
Q ss_pred HHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC----
Q 016351 68 NSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP---- 142 (391)
Q Consensus 68 ~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~---- 142 (391)
+.|...+...++.+|||||||+|.++..+++.+. +|+|+|++ .|++.+++++.. .++++++++|+.+++++
T Consensus 19 ~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~~~-~V~avEid~~~~~~~~~~~~~---~~~v~~i~~D~~~~~~~~~~~ 94 (255)
T 3tqs_A 19 QKIVSAIHPQKTDTLVEIGPGRGALTDYLLTECD-NLALVEIDRDLVAFLQKKYNQ---QKNITIYQNDALQFDFSSVKT 94 (255)
T ss_dssp HHHHHHHCCCTTCEEEEECCTTTTTHHHHTTTSS-EEEEEECCHHHHHHHHHHHTT---CTTEEEEESCTTTCCGGGSCC
T ss_pred HHHHHhcCCCCcCEEEEEcccccHHHHHHHHhCC-EEEEEECCHHHHHHHHHHHhh---CCCcEEEEcchHhCCHHHhcc
Confidence 3344444556788999999999999999999875 89999999 999999998865 24599999999998653
Q ss_pred -CcccEEEEccc
Q 016351 143 -EKVDVIISEWM 153 (391)
Q Consensus 143 -~~~D~Ivse~~ 153 (391)
+++| |++++.
T Consensus 95 ~~~~~-vv~NlP 105 (255)
T 3tqs_A 95 DKPLR-VVGNLP 105 (255)
T ss_dssp SSCEE-EEEECC
T ss_pred CCCeE-EEecCC
Confidence 3577 777653
|
| >3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=2.3e-09 Score=98.31 Aligned_cols=88 Identities=19% Similarity=0.269 Sum_probs=69.4
Q ss_pred hcCChHhHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEc
Q 016351 56 MLSDRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEG 134 (391)
Q Consensus 56 ml~d~~r~~~~~~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~ 134 (391)
++.|..- .+.|.+.+...++ +|||||||+|.++..+++.+. +|+|+|++ .|++.+++++.. .+++++++
T Consensus 29 fL~d~~i----~~~Iv~~~~~~~~-~VLEIG~G~G~lt~~L~~~~~-~V~avEid~~~~~~l~~~~~~----~~v~vi~~ 98 (271)
T 3fut_A 29 FLVSEAH----LRRIVEAARPFTG-PVFEVGPGLGALTRALLEAGA-EVTAIEKDLRLRPVLEETLSG----LPVRLVFQ 98 (271)
T ss_dssp EECCHHH----HHHHHHHHCCCCS-CEEEECCTTSHHHHHHHHTTC-CEEEEESCGGGHHHHHHHTTT----SSEEEEES
T ss_pred ccCCHHH----HHHHHHhcCCCCC-eEEEEeCchHHHHHHHHHcCC-EEEEEECCHHHHHHHHHhcCC----CCEEEEEC
Confidence 4555433 3344444445567 999999999999999999985 79999999 999999987752 35999999
Q ss_pred ccccCCCC--CcccEEEEccc
Q 016351 135 SVEDIVLP--EKVDVIISEWM 153 (391)
Q Consensus 135 d~~~~~~~--~~~D~Ivse~~ 153 (391)
|+.+++++ ..+|.|++++.
T Consensus 99 D~l~~~~~~~~~~~~iv~NlP 119 (271)
T 3fut_A 99 DALLYPWEEVPQGSLLVANLP 119 (271)
T ss_dssp CGGGSCGGGSCTTEEEEEEEC
T ss_pred ChhhCChhhccCccEEEecCc
Confidence 99998765 36899999874
|
| >2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=98.91 E-value=2.5e-09 Score=105.50 Aligned_cols=117 Identities=15% Similarity=0.018 Sum_probs=86.1
Q ss_pred HHHHHhcCCCCCCCEEEEECCcccHHHHHHHHc--------------CCCeEEEEech-HHHHHHHHHHHHcCCCC-cEE
Q 016351 67 FNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQA--------------GARKVYAVEAT-KMSDHARTLVKANNLQD-VVE 130 (391)
Q Consensus 67 ~~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~--------------g~~~V~avD~s-~~~~~a~~~~~~~~~~~-~v~ 130 (391)
.+.+.+.+...++.+|||.|||+|.+.+.+++. ...+++|+|++ .++..|+.++..+++.. .+.
T Consensus 160 ~~~mv~~l~~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~~~~~~ 239 (445)
T 2okc_A 160 IQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSP 239 (445)
T ss_dssp HHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCCS
T ss_pred HHHHHHHhCCCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCCcCCCC
Confidence 344444444456778999999999998888764 12369999999 89999999999888852 478
Q ss_pred EEEcccccCCCCCcccEEEEccccccccCcc--------------hHHHHHHHHhccccCCeEEEcc
Q 016351 131 VIEGSVEDIVLPEKVDVIISEWMGYFLLRES--------------MFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 131 ~i~~d~~~~~~~~~~D~Ivse~~~~~~~~e~--------------~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
++++|........+||+|++++......... ....++..+.++|+|||++.+.
T Consensus 240 i~~gD~l~~~~~~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~V 306 (445)
T 2okc_A 240 IVCEDSLEKEPSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVV 306 (445)
T ss_dssp EEECCTTTSCCSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEE
T ss_pred EeeCCCCCCcccCCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEEE
Confidence 9999988876557999999987422211110 1135778888999999987643
|
| >1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A | Back alignment and structure |
|---|
Probab=98.89 E-value=1.8e-08 Score=91.14 Aligned_cols=82 Identities=17% Similarity=0.295 Sum_probs=65.5
Q ss_pred HHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCC-
Q 016351 66 YFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPE- 143 (391)
Q Consensus 66 ~~~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~- 143 (391)
..+.|...+...++.+|||||||+|.++..+++.+. +|+|+|++ .+++.++++++.. ++++++++|+.+++++.
T Consensus 18 ~~~~i~~~~~~~~~~~VLDiG~G~G~lt~~l~~~~~-~v~~vD~~~~~~~~a~~~~~~~---~~v~~~~~D~~~~~~~~~ 93 (244)
T 1qam_A 18 NIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRCN-FVTAIEIDHKLCKTTENKLVDH---DNFQVLNKDILQFKFPKN 93 (244)
T ss_dssp HHHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHHSS-EEEEECSCHHHHHHHHHHTTTC---CSEEEECCCGGGCCCCSS
T ss_pred HHHHHHHhCCCCCCCEEEEEeCCchHHHHHHHHcCC-eEEEEECCHHHHHHHHHhhccC---CCeEEEEChHHhCCcccC
Confidence 344566666556778999999999999999999875 89999999 9999999887542 35999999999987662
Q ss_pred -cccEEEEcc
Q 016351 144 -KVDVIISEW 152 (391)
Q Consensus 144 -~~D~Ivse~ 152 (391)
.+ .|++++
T Consensus 94 ~~~-~vv~nl 102 (244)
T 1qam_A 94 QSY-KIFGNI 102 (244)
T ss_dssp CCC-EEEEEC
T ss_pred CCe-EEEEeC
Confidence 44 566665
|
| >1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=98.86 E-value=1.3e-10 Score=105.28 Aligned_cols=107 Identities=21% Similarity=0.286 Sum_probs=76.7
Q ss_pred HHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC--Cccc
Q 016351 70 IFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP--EKVD 146 (391)
Q Consensus 70 i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~--~~~D 146 (391)
|.+.+...++.+|||||||+|.++..+++.+ .+|+|+|++ .+++.|+++++ ..++++++++|+.+++++ ++|
T Consensus 21 i~~~~~~~~~~~VLDiG~G~G~~~~~l~~~~-~~v~~id~~~~~~~~a~~~~~---~~~~v~~~~~D~~~~~~~~~~~f- 95 (245)
T 1yub_A 21 IIKQLNLKETDTVYEIGTGKGHLTTKLAKIS-KQVTSIELDSHLFNLSSEKLK---LNTRVTLIHQDILQFQFPNKQRY- 95 (245)
T ss_dssp HHHHCCCCSSEEEEECSCCCSSCSHHHHHHS-SEEEESSSSCSSSSSSSCTTT---TCSEEEECCSCCTTTTCCCSSEE-
T ss_pred HHHhcCCCCCCEEEEEeCCCCHHHHHHHHhC-CeEEEEECCHHHHHHHHHHhc---cCCceEEEECChhhcCcccCCCc-
Confidence 4444445577899999999999999999987 489999999 89888877664 234699999999998765 578
Q ss_pred EEEEccccccccCcchHHHH----------H----HHHhccccCCeEEEcc
Q 016351 147 VIISEWMGYFLLRESMFDSV----------I----CARDRWLKPTGVMYPS 183 (391)
Q Consensus 147 ~Ivse~~~~~~~~e~~l~~~----------l----~~~~~~L~~gG~ii~~ 183 (391)
.|++++. +.... ..+..+ + +.+.++|+|||.+...
T Consensus 96 ~vv~n~P-y~~~~-~~~~~~~~~~~~~~~~lm~q~e~a~rll~~~G~l~v~ 144 (245)
T 1yub_A 96 KIVGNIP-YHLST-QIIKKVVFESRASDIYLIVEEGFYKRTLDIHRTLGLL 144 (245)
T ss_dssp EEEEECC-SSSCH-HHHHHHHHHCCCEEEEEEEESSHHHHHHCGGGSHHHH
T ss_pred EEEEeCC-ccccH-HHHHHHHhCCCCCeEEEEeeHHHHHHHhCCCCchhhh
Confidence 7777653 22211 111222 2 4467888999876543
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=1e-08 Score=106.36 Aligned_cols=119 Identities=18% Similarity=0.166 Sum_probs=88.5
Q ss_pred HHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCC-----------------------------------------
Q 016351 63 MDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGA----------------------------------------- 101 (391)
Q Consensus 63 ~~~~~~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g~----------------------------------------- 101 (391)
.+.+..++.......++..|||.+||||.+.+.+|..+.
T Consensus 175 ~e~LAa~ll~~~~~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~ 254 (703)
T 3v97_A 175 KETLAAAIVMRSGWQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAE 254 (703)
T ss_dssp CHHHHHHHHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHhhCCCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhcccc
Confidence 345666676666666778999999999999988886521
Q ss_pred --CeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC---CcccEEEEccc-cccccCcchHHHHHHHHhcc-
Q 016351 102 --RKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP---EKVDVIISEWM-GYFLLRESMFDSVICARDRW- 173 (391)
Q Consensus 102 --~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~---~~~D~Ivse~~-~~~~~~e~~l~~~l~~~~~~- 173 (391)
.+|+|+|++ .+++.|++++..+|+.+.|++.++|+.++..+ +++|+|++++. +.-+..+..+..+...+.+.
T Consensus 255 ~~~~i~G~Did~~av~~A~~N~~~agv~~~i~~~~~D~~~~~~~~~~~~~d~Iv~NPPYG~Rlg~~~~l~~ly~~l~~~l 334 (703)
T 3v97_A 255 YSSHFYGSDSDARVIQRARTNARLAGIGELITFEVKDVAQLTNPLPKGPYGTVLSNPPYGERLDSEPALIALHSLLGRIM 334 (703)
T ss_dssp CCCCEEEEESCHHHHHHHHHHHHHTTCGGGEEEEECCGGGCCCSCTTCCCCEEEECCCCCC---CCHHHHHHHHHHHHHH
T ss_pred CCccEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCccccccCCCCEEEeCCCccccccchhHHHHHHHHHHHHH
Confidence 369999999 99999999999999998899999999998544 28999999874 22222233455555555444
Q ss_pred --ccCCeEEE
Q 016351 174 --LKPTGVMY 181 (391)
Q Consensus 174 --L~~gG~ii 181 (391)
+.|||.+.
T Consensus 335 k~~~~g~~~~ 344 (703)
T 3v97_A 335 KNQFGGWNLS 344 (703)
T ss_dssp HHHCTTCEEE
T ss_pred HhhCCCCeEE
Confidence 45788765
|
| >3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=98.85 E-value=2.7e-08 Score=86.75 Aligned_cols=98 Identities=14% Similarity=0.147 Sum_probs=75.2
Q ss_pred CCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCC--CCcEEEEEcccccC---------------
Q 016351 78 QGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNL--QDVVEVIEGSVEDI--------------- 139 (391)
Q Consensus 78 ~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~--~~~v~~i~~d~~~~--------------- 139 (391)
+.++|||+||| ..++.+|+....+|++||.+ +.++.|+++++.+|+ .++|+++.+|+.+.
T Consensus 30 ~a~~VLEiGtG--ySTl~lA~~~~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~~~~wg~p~~~~~~~~l 107 (202)
T 3cvo_A 30 EAEVILEYGSG--GSTVVAAELPGKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIGPTGDWGHPVSDAKWRSY 107 (202)
T ss_dssp HCSEEEEESCS--HHHHHHHTSTTCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSSBCGGGCBSSSTTGGGT
T ss_pred CCCEEEEECch--HHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCchhhhcccccccchhhhhH
Confidence 34789999985 67788887633589999999 899999999999998 88899999996542
Q ss_pred --------CCC--CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcccc
Q 016351 140 --------VLP--EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 140 --------~~~--~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~~ 185 (391)
..+ ++||+|+.+.- . ....+..+.++|+|||+++....
T Consensus 108 ~~~~~~i~~~~~~~~fDlIfIDg~--k------~~~~~~~~l~~l~~GG~Iv~DNv 155 (202)
T 3cvo_A 108 PDYPLAVWRTEGFRHPDVVLVDGR--F------RVGCALATAFSITRPVTLLFDDY 155 (202)
T ss_dssp THHHHGGGGCTTCCCCSEEEECSS--S------HHHHHHHHHHHCSSCEEEEETTG
T ss_pred HHHhhhhhccccCCCCCEEEEeCC--C------chhHHHHHHHhcCCCeEEEEeCC
Confidence 123 68999998651 0 11334445588999999987653
|
| >3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=98.84 E-value=3.3e-09 Score=102.41 Aligned_cols=74 Identities=20% Similarity=0.193 Sum_probs=65.0
Q ss_pred CCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHc--CCCCcEEEEEcccccC-CC--CCcccEEEEc
Q 016351 78 QGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKAN--NLQDVVEVIEGSVEDI-VL--PEKVDVIISE 151 (391)
Q Consensus 78 ~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~--~~~~~v~~i~~d~~~~-~~--~~~~D~Ivse 151 (391)
++.+|||+|||+|..++.+++.+. +|++||++ .+++.|+++++.+ ++ ++++++++|+.+. .. .++||+|+++
T Consensus 93 ~g~~VLDLgcG~G~~al~LA~~g~-~V~~VD~s~~~l~~Ar~N~~~~~~gl-~~i~~i~~Da~~~L~~~~~~~fDvV~lD 170 (410)
T 3ll7_A 93 EGTKVVDLTGGLGIDFIALMSKAS-QGIYIERNDETAVAARHNIPLLLNEG-KDVNILTGDFKEYLPLIKTFHPDYIYVD 170 (410)
T ss_dssp TTCEEEESSCSSSHHHHHHHTTCS-EEEEEESCHHHHHHHHHHHHHHSCTT-CEEEEEESCGGGSHHHHHHHCCSEEEEC
T ss_pred CCCEEEEeCCCchHHHHHHHhcCC-EEEEEECCHHHHHHHHHhHHHhccCC-CcEEEEECcHHHhhhhccCCCceEEEEC
Confidence 378999999999999999998876 89999999 9999999999988 88 5699999999885 21 1589999998
Q ss_pred cc
Q 016351 152 WM 153 (391)
Q Consensus 152 ~~ 153 (391)
+.
T Consensus 171 PP 172 (410)
T 3ll7_A 171 PA 172 (410)
T ss_dssp CE
T ss_pred CC
Confidence 75
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* | Back alignment and structure |
|---|
Probab=98.83 E-value=5.7e-09 Score=99.67 Aligned_cols=98 Identities=11% Similarity=0.136 Sum_probs=74.5
Q ss_pred CCCEEEEECCcccHHHHHHHHcC-CCeEEEEechHHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEcccccc
Q 016351 78 QGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMGYF 156 (391)
Q Consensus 78 ~~~~VLDlGcGtG~l~~~~a~~g-~~~V~avD~s~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~~D~Ivse~~~~~ 156 (391)
+..+|||||||+|.++..+++.. ..+++++|+..+++.|++ .. +|+++.+|+.+ +++. ||+|++..+.+.
T Consensus 188 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~------~~-~v~~~~~d~~~-~~p~-~D~v~~~~~lh~ 258 (352)
T 1fp2_A 188 GLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLSG------SN-NLTYVGGDMFT-SIPN-ADAVLLKYILHN 258 (352)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCC------BT-TEEEEECCTTT-CCCC-CSEEEEESCGGG
T ss_pred cCceEEEeCCCccHHHHHHHHHCCCCeEEEeeCHHHHhhccc------CC-CcEEEeccccC-CCCC-ccEEEeehhhcc
Confidence 45899999999999999998873 348999999667766654 12 39999999976 4554 999998554444
Q ss_pred ccCcchHHHHHHHHhccccC---CeEEEcccc
Q 016351 157 LLRESMFDSVICARDRWLKP---TGVMYPSHA 185 (391)
Q Consensus 157 ~~~e~~l~~~l~~~~~~L~~---gG~ii~~~~ 185 (391)
+..+ ....+++++++.|+| ||++++...
T Consensus 259 ~~d~-~~~~~l~~~~~~L~p~~~gG~l~i~e~ 289 (352)
T 1fp2_A 259 WTDK-DCLRILKKCKEAVTNDGKRGKVTIIDM 289 (352)
T ss_dssp SCHH-HHHHHHHHHHHHHSGGGCCCEEEEEEC
T ss_pred CCHH-HHHHHHHHHHHhCCCCCCCcEEEEEEe
Confidence 4322 234789999999999 999886643
|
| >2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=98.83 E-value=1.2e-09 Score=99.67 Aligned_cols=77 Identities=21% Similarity=0.129 Sum_probs=62.8
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCCCeEEEEechH--------HHHHHHHHHHHcCCCCcEEEEEcccccCC--CC---C
Q 016351 77 FQGKTVLDVGTGSGILAIWSAQAGARKVYAVEATK--------MSDHARTLVKANNLQDVVEVIEGSVEDIV--LP---E 143 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s~--------~~~~a~~~~~~~~~~~~v~~i~~d~~~~~--~~---~ 143 (391)
.++.+|||+|||+|.+++.+|+.|. +|+++|+++ +++.|+++++.+++.++|+++++|+.++. ++ +
T Consensus 82 ~~~~~VLDlgcG~G~~a~~lA~~g~-~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~~l~~~~~~~~ 160 (258)
T 2r6z_A 82 TAHPTVWDATAGLGRDSFVLASLGL-TVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQMPALVKTQG 160 (258)
T ss_dssp GGCCCEEETTCTTCHHHHHHHHTTC-CEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHHHHHHHHHHC
T ss_pred CCcCeEEEeeCccCHHHHHHHHhCC-EEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHHHHHhhhccCC
Confidence 4567899999999999999999876 799999985 35567777777777677999999998852 23 5
Q ss_pred cccEEEEcccc
Q 016351 144 KVDVIISEWMG 154 (391)
Q Consensus 144 ~~D~Ivse~~~ 154 (391)
+||+|+++++.
T Consensus 161 ~fD~V~~dP~~ 171 (258)
T 2r6z_A 161 KPDIVYLDPMY 171 (258)
T ss_dssp CCSEEEECCCC
T ss_pred CccEEEECCCC
Confidence 89999998753
|
| >3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=98.78 E-value=1.4e-08 Score=93.64 Aligned_cols=81 Identities=17% Similarity=0.172 Sum_probs=62.6
Q ss_pred HHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCC---eEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCC
Q 016351 68 NSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGAR---KVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPE 143 (391)
Q Consensus 68 ~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g~~---~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~ 143 (391)
+.|...+...++.+|||||||+|.++..+++.+.. +|+|+|++ .|++.++++. ..+++++++|+.+++++.
T Consensus 32 ~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~-----~~~v~~i~~D~~~~~~~~ 106 (279)
T 3uzu_A 32 DAIVAAIRPERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRF-----GELLELHAGDALTFDFGS 106 (279)
T ss_dssp HHHHHHHCCCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHH-----GGGEEEEESCGGGCCGGG
T ss_pred HHHHHhcCCCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhc-----CCCcEEEECChhcCChhH
Confidence 33444444567789999999999999999988652 29999999 9999999883 245999999999987653
Q ss_pred c-------ccEEEEccc
Q 016351 144 K-------VDVIISEWM 153 (391)
Q Consensus 144 ~-------~D~Ivse~~ 153 (391)
. .+.||+++.
T Consensus 107 ~~~~~~~~~~~vv~NlP 123 (279)
T 3uzu_A 107 IARPGDEPSLRIIGNLP 123 (279)
T ss_dssp GSCSSSSCCEEEEEECC
T ss_pred hcccccCCceEEEEccC
Confidence 2 346777763
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* | Back alignment and structure |
|---|
Probab=98.77 E-value=1.1e-08 Score=97.86 Aligned_cols=98 Identities=12% Similarity=0.170 Sum_probs=74.9
Q ss_pred CCCEEEEECCcccHHHHHHHHcC-CCeEEEEechHHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEcccccc
Q 016351 78 QGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMGYF 156 (391)
Q Consensus 78 ~~~~VLDlGcGtG~l~~~~a~~g-~~~V~avD~s~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~~D~Ivse~~~~~ 156 (391)
+..+|||||||+|.++..+++.. ..+++++|++.+++.|++ ..+ |+++.+|+.+ +.+ .||+|++..+.+.
T Consensus 193 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~------~~~-v~~~~~d~~~-~~~-~~D~v~~~~vlh~ 263 (358)
T 1zg3_A 193 GLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQPQVVGNLTG------NEN-LNFVGGDMFK-SIP-SADAVLLKWVLHD 263 (358)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECHHHHSSCCC------CSS-EEEEECCTTT-CCC-CCSEEEEESCGGG
T ss_pred CCCEEEEECCCcCHHHHHHHHHCCCCeEEEeccHHHHhhccc------CCC-cEEEeCccCC-CCC-CceEEEEcccccC
Confidence 45799999999999999999874 337999999877766553 233 9999999987 555 5999998655444
Q ss_pred ccCcchHHHHHHHHhccccC---CeEEEcccc
Q 016351 157 LLRESMFDSVICARDRWLKP---TGVMYPSHA 185 (391)
Q Consensus 157 ~~~e~~l~~~l~~~~~~L~~---gG~ii~~~~ 185 (391)
+..+ ....+++++.+.|+| ||.+++...
T Consensus 264 ~~d~-~~~~~l~~~~~~L~p~~~gG~l~i~e~ 294 (358)
T 1zg3_A 264 WNDE-QSLKILKNSKEAISHKGKDGKVIIIDI 294 (358)
T ss_dssp SCHH-HHHHHHHHHHHHTGGGGGGCEEEEEEC
T ss_pred CCHH-HHHHHHHHHHHhCCCCCCCcEEEEEEe
Confidence 4322 244889999999999 998886543
|
| >1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A* | Back alignment and structure |
|---|
Probab=98.76 E-value=9e-09 Score=95.84 Aligned_cols=76 Identities=21% Similarity=0.209 Sum_probs=64.4
Q ss_pred CCCCCCEEEEECCcccHHHHHHHHcC-CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC--C---C-Cccc
Q 016351 75 HHFQGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV--L---P-EKVD 146 (391)
Q Consensus 75 ~~~~~~~VLDlGcGtG~l~~~~a~~g-~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~--~---~-~~~D 146 (391)
...++.+|||+|||+|.++..+++.. ..+|+|+|.+ .+++.|+++++.++ ++++++++|+.++. + . .+||
T Consensus 23 ~~~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g--~~v~~v~~d~~~l~~~l~~~g~~~~D 100 (301)
T 1m6y_A 23 KPEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFS--DRVSLFKVSYREADFLLKTLGIEKVD 100 (301)
T ss_dssp CCCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGT--TTEEEEECCGGGHHHHHHHTTCSCEE
T ss_pred CCCCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEECCHHHHHHHHHhcCCCCCC
Confidence 34567899999999999999999873 4589999999 99999999998877 46999999998864 1 1 5799
Q ss_pred EEEEcc
Q 016351 147 VIISEW 152 (391)
Q Consensus 147 ~Ivse~ 152 (391)
.|++++
T Consensus 101 ~Vl~D~ 106 (301)
T 1m6y_A 101 GILMDL 106 (301)
T ss_dssp EEEEEC
T ss_pred EEEEcC
Confidence 999876
|
| >3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B* | Back alignment and structure |
|---|
Probab=98.76 E-value=1.1e-08 Score=92.67 Aligned_cols=83 Identities=20% Similarity=0.321 Sum_probs=64.3
Q ss_pred HHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCc
Q 016351 66 YFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEK 144 (391)
Q Consensus 66 ~~~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~ 144 (391)
+.+.|.+.+...++.+|||||||+|.++..+++.|+.+|+|+|++ .+++.++++ . ..+++++++|+.+++++..
T Consensus 19 i~~~iv~~~~~~~~~~VLDiG~G~G~lt~~L~~~~~~~v~avEid~~~~~~~~~~----~-~~~v~~i~~D~~~~~~~~~ 93 (249)
T 3ftd_A 19 VLKKIAEELNIEEGNTVVEVGGGTGNLTKVLLQHPLKKLYVIELDREMVENLKSI----G-DERLEVINEDASKFPFCSL 93 (249)
T ss_dssp HHHHHHHHTTCCTTCEEEEEESCHHHHHHHHTTSCCSEEEEECCCHHHHHHHTTS----C-CTTEEEECSCTTTCCGGGS
T ss_pred HHHHHHHhcCCCCcCEEEEEcCchHHHHHHHHHcCCCeEEEEECCHHHHHHHHhc----c-CCCeEEEEcchhhCChhHc
Confidence 344455555566788999999999999999999876699999999 899988876 1 2359999999999876531
Q ss_pred --ccEEEEccc
Q 016351 145 --VDVIISEWM 153 (391)
Q Consensus 145 --~D~Ivse~~ 153 (391)
...|++++.
T Consensus 94 ~~~~~vv~NlP 104 (249)
T 3ftd_A 94 GKELKVVGNLP 104 (249)
T ss_dssp CSSEEEEEECC
T ss_pred cCCcEEEEECc
Confidence 236666653
|
| >2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A | Back alignment and structure |
|---|
Probab=98.75 E-value=4e-09 Score=90.22 Aligned_cols=86 Identities=20% Similarity=0.204 Sum_probs=67.5
Q ss_pred CCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC---C-CcccEEEE
Q 016351 76 HFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL---P-EKVDVIIS 150 (391)
Q Consensus 76 ~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~---~-~~~D~Ivs 150 (391)
..++.+|||||||+ | ++|+| .|++.|+++... +++++++|+.++++ + ++||+|+|
T Consensus 10 ~~~g~~vL~~~~g~--------------v-~vD~s~~ml~~a~~~~~~-----~~~~~~~d~~~~~~~~~~~~~fD~V~~ 69 (176)
T 2ld4_A 10 ISAGQFVAVVWDKS--------------S-PVEALKGLVDKLQALTGN-----EGRVSVENIKQLLQSAHKESSFDIILS 69 (176)
T ss_dssp CCTTSEEEEEECTT--------------S-CHHHHHHHHHHHHHHTTT-----TSEEEEEEGGGGGGGCCCSSCEEEEEE
T ss_pred CCCCCEEEEecCCc--------------e-eeeCCHHHHHHHHHhccc-----CcEEEEechhcCccccCCCCCEeEEEE
Confidence 45779999999996 2 39999 999999887543 28999999998875 4 78999999
Q ss_pred ccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 151 EWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 151 e~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
....+++. .+...++.+++++|||||.+++.
T Consensus 70 ~~~l~~~~--~~~~~~l~~~~r~LkpgG~l~~~ 100 (176)
T 2ld4_A 70 GLVPGSTT--LHSAEILAEIARILRPGGCLFLK 100 (176)
T ss_dssp CCSTTCCC--CCCHHHHHHHHHHEEEEEEEEEE
T ss_pred CChhhhcc--cCHHHHHHHHHHHCCCCEEEEEE
Confidence 54333321 23578899999999999999873
|
| >3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.70 E-value=6.6e-08 Score=88.98 Aligned_cols=110 Identities=19% Similarity=0.242 Sum_probs=84.6
Q ss_pred CCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHc--C-C-CCcEEEEEcccccCCC--CCcccEEE
Q 016351 78 QGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKAN--N-L-QDVVEVIEGSVEDIVL--PEKVDVII 149 (391)
Q Consensus 78 ~~~~VLDlGcGtG~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~--~-~-~~~v~~i~~d~~~~~~--~~~~D~Iv 149 (391)
..++||-||.|.|..+..+++. +..+|+.||++ .+++.+++.+... + + ..+++++.+|...+-. .++||+||
T Consensus 83 ~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~~~~yDvIi 162 (294)
T 3o4f_A 83 HAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDVII 162 (294)
T ss_dssp CCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCSSCCEEEEE
T ss_pred CCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhccccCCEEE
Confidence 4589999999999999999987 56799999999 8999999886431 1 2 3579999999988632 27999999
Q ss_pred EccccccccCcc-hHHHHHHHHhccccCCeEEEccccee
Q 016351 150 SEWMGYFLLRES-MFDSVICARDRWLKPTGVMYPSHARM 187 (391)
Q Consensus 150 se~~~~~~~~e~-~l~~~l~~~~~~L~~gG~ii~~~~~~ 187 (391)
.+........+. .-..+++.+++.|+|||+++......
T Consensus 163 ~D~~dp~~~~~~L~t~eFy~~~~~~L~p~Gv~v~q~~sp 201 (294)
T 3o4f_A 163 SDCTDPIGPGESLFTSAFYEGCKRCLNPGGIFVAQNGVC 201 (294)
T ss_dssp ESCCCCCCTTCCSSCCHHHHHHHHTEEEEEEEEEEEEES
T ss_pred EeCCCcCCCchhhcCHHHHHHHHHHhCCCCEEEEecCCc
Confidence 987544322221 12467889999999999998654443
|
| >2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A | Back alignment and structure |
|---|
Probab=98.66 E-value=2.2e-08 Score=91.06 Aligned_cols=84 Identities=18% Similarity=0.152 Sum_probs=63.6
Q ss_pred HHhcCCCCCC--CEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHc-------C-CCCcEEEEEccccc
Q 016351 70 IFQNKHHFQG--KTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKAN-------N-LQDVVEVIEGSVED 138 (391)
Q Consensus 70 i~~~~~~~~~--~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~-------~-~~~~v~~i~~d~~~ 138 (391)
+.+.+...++ .+|||+|||+|..++.+++.|+ +|++||.+ .++..++++++.. + +.++++++++|..+
T Consensus 78 l~~al~l~~g~~~~VLDl~~G~G~dal~lA~~g~-~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~~~ 156 (258)
T 2oyr_A 78 VAKAVGIKGDYLPDVVDATAGLGRDAFVLASVGC-RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLT 156 (258)
T ss_dssp HHHHTTCBTTBCCCEEETTCTTCHHHHHHHHHTC-CEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHH
T ss_pred HHHHhcccCCCCCEEEEcCCcCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCHHH
Confidence 3334433455 7999999999999999999987 69999999 7777766655422 2 33469999999988
Q ss_pred C-C-CCCcccEEEEcccc
Q 016351 139 I-V-LPEKVDVIISEWMG 154 (391)
Q Consensus 139 ~-~-~~~~~D~Ivse~~~ 154 (391)
+ . ++++||+|+++++.
T Consensus 157 ~L~~~~~~fDvV~lDP~y 174 (258)
T 2oyr_A 157 ALTDITPRPQVVYLDPMF 174 (258)
T ss_dssp HSTTCSSCCSEEEECCCC
T ss_pred HHHhCcccCCEEEEcCCC
Confidence 4 2 33579999999864
|
| >1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A | Back alignment and structure |
|---|
Probab=98.64 E-value=1.6e-08 Score=91.87 Aligned_cols=79 Identities=13% Similarity=0.171 Sum_probs=59.8
Q ss_pred HHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCe--EEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCC--
Q 016351 69 SIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARK--VYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPE-- 143 (391)
Q Consensus 69 ~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g~~~--V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~-- 143 (391)
.|.+.+...++.+|||||||+|.++. +++ + .+ |+|+|++ .|++.++++.... ++++++++|+.+++++.
T Consensus 12 ~iv~~~~~~~~~~VLEIG~G~G~lt~-l~~-~-~~~~v~avEid~~~~~~a~~~~~~~---~~v~~i~~D~~~~~~~~~~ 85 (252)
T 1qyr_A 12 SIVSAINPQKGQAMVEIGPGLAALTE-PVG-E-RLDQLTVIELDRDLAARLQTHPFLG---PKLTIYQQDAMTFNFGELA 85 (252)
T ss_dssp HHHHHHCCCTTCCEEEECCTTTTTHH-HHH-T-TCSCEEEECCCHHHHHHHHTCTTTG---GGEEEECSCGGGCCHHHHH
T ss_pred HHHHhcCCCCcCEEEEECCCCcHHHH-hhh-C-CCCeEEEEECCHHHHHHHHHHhccC---CceEEEECchhhCCHHHhh
Confidence 34444444567889999999999999 765 4 36 9999999 9999998876532 35999999999976542
Q ss_pred ----cccEEEEccc
Q 016351 144 ----KVDVIISEWM 153 (391)
Q Consensus 144 ----~~D~Ivse~~ 153 (391)
..|.|++++.
T Consensus 86 ~~~~~~~~vvsNlP 99 (252)
T 1qyr_A 86 EKMGQPLRVFGNLP 99 (252)
T ss_dssp HHHTSCEEEEEECC
T ss_pred cccCCceEEEECCC
Confidence 2468888763
|
| >2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B* | Back alignment and structure |
|---|
Probab=98.50 E-value=1.8e-07 Score=94.16 Aligned_cols=115 Identities=11% Similarity=-0.055 Sum_probs=82.1
Q ss_pred HHHhcCCCCCCCEEEEECCcccHHHHHHHHc----C---------------CCeEEEEech-HHHHHHHHHHHHcCCCC-
Q 016351 69 SIFQNKHHFQGKTVLDVGTGSGILAIWSAQA----G---------------ARKVYAVEAT-KMSDHARTLVKANNLQD- 127 (391)
Q Consensus 69 ~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~----g---------------~~~V~avD~s-~~~~~a~~~~~~~~~~~- 127 (391)
.+.+.+...++.+|||.+||||.+.+.+++. + ..+++|+|++ .++..|+.++..+++.+
T Consensus 160 ~mv~~l~p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l~gi~~~ 239 (541)
T 2ar0_A 160 TIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGN 239 (541)
T ss_dssp HHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCCB
T ss_pred HHHHHhccCCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHHhCCCcc
Confidence 3444444456779999999999998887764 1 1369999999 89999999998888764
Q ss_pred ---cEEEEEcccccCCC--CCcccEEEEccccccccC-----------cchHHHHHHHHhccccCCeEEEcc
Q 016351 128 ---VVEVIEGSVEDIVL--PEKVDVIISEWMGYFLLR-----------ESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 128 ---~v~~i~~d~~~~~~--~~~~D~Ivse~~~~~~~~-----------e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
.+.++++|...... ..+||+|++++....... ...-..++..+.++|+|||++.+.
T Consensus 240 ~~~~~~I~~gDtL~~~~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~a~V 311 (541)
T 2ar0_A 240 LDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVV 311 (541)
T ss_dssp GGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ccccCCeEeCCCcccccccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCCCCEEEEE
Confidence 27889999766431 268999999874222111 111235677788999999987643
|
| >3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A* | Back alignment and structure |
|---|
Probab=98.41 E-value=1.3e-07 Score=85.38 Aligned_cols=107 Identities=12% Similarity=0.101 Sum_probs=67.7
Q ss_pred CCCCCCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-CcccEEEE
Q 016351 74 KHHFQGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIIS 150 (391)
Q Consensus 74 ~~~~~~~~VLDlGcGtG~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~-~~~D~Ivs 150 (391)
....++.+|||||||+|.++..+++. ++.+|+|+|++ ++....... ...+. + +..+.+++....++ +++|+|+|
T Consensus 70 ~~l~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~~~pi~~-~~~g~-~-ii~~~~~~dv~~l~~~~~DlVls 146 (277)
T 3evf_A 70 GYVKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHEKPMNV-QSLGW-N-IITFKDKTDIHRLEPVKCDTLLC 146 (277)
T ss_dssp TSSCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTCCCCCCC-CBTTG-G-GEEEECSCCTTTSCCCCCSEEEE
T ss_pred CCCCCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCccccccc-CcCCC-C-eEEEeccceehhcCCCCccEEEe
Confidence 33456679999999999999988876 67789999988 641111100 00011 2 44456665444444 78999999
Q ss_pred ccccccccCcch---HHHHHHHHhccccCC-eEEEcc
Q 016351 151 EWMGYFLLRESM---FDSVICARDRWLKPT-GVMYPS 183 (391)
Q Consensus 151 e~~~~~~~~e~~---l~~~l~~~~~~L~~g-G~ii~~ 183 (391)
+..........+ .-.+++.+.++|+|| |.|+.-
T Consensus 147 D~apnsG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~K 183 (277)
T 3evf_A 147 DIGESSSSSVTEGERTVRVLDTVEKWLACGVDNFCVK 183 (277)
T ss_dssp CCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred cCccCcCchHHHHHHHHHHHHHHHHHhCCCCCeEEEE
Confidence 875441111111 113467788999999 998853
|
| >2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus} | Back alignment and structure |
|---|
Probab=98.40 E-value=2e-06 Score=78.89 Aligned_cols=120 Identities=13% Similarity=0.133 Sum_probs=86.3
Q ss_pred HhHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHc----C--CCeEEEEech-H----------------------
Q 016351 61 VRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQA----G--ARKVYAVEAT-K---------------------- 111 (391)
Q Consensus 61 ~r~~~~~~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~----g--~~~V~avD~s-~---------------------- 111 (391)
.|...+...+...........|||+|+..|..++.++.. + .++|+++|.. .
T Consensus 89 ~r~~~L~~l~~~v~~~~~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~ 168 (282)
T 2wk1_A 89 KRLENIRQCVEDVIGNNVPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNS 168 (282)
T ss_dssp HHHHHHHHHHHHHHHTTCCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHH
T ss_pred HHHHHHHHHHHHHHhcCCCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccc
Confidence 344444444444332344578999999999988777653 1 4579999952 1
Q ss_pred ----HHHHHHHHHHHcCCC-CcEEEEEcccccCC--CC-CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 112 ----MSDHARTLVKANNLQ-DVVEVIEGSVEDIV--LP-EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 112 ----~~~~a~~~~~~~~~~-~~v~~i~~d~~~~~--~~-~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
.++.+++++++.|+. ++|+++.+++.+.- .+ ++||+|+.+. + ..+ .....++.+...|+|||++++.
T Consensus 169 ~~~~~~~~ar~n~~~~gl~~~~I~li~Gda~etL~~~~~~~~d~vfIDa-D---~y~-~~~~~Le~~~p~L~pGGiIv~D 243 (282)
T 2wk1_A 169 VLAVSEEEVRRNFRNYDLLDEQVRFLPGWFKDTLPTAPIDTLAVLRMDG-D---LYE-STWDTLTNLYPKVSVGGYVIVD 243 (282)
T ss_dssp HHCCCHHHHHHHHHHTTCCSTTEEEEESCHHHHSTTCCCCCEEEEEECC-C---SHH-HHHHHHHHHGGGEEEEEEEEES
T ss_pred cchhHHHHHHHHHHHcCCCcCceEEEEeCHHHHHhhCCCCCEEEEEEcC-C---ccc-cHHHHHHHHHhhcCCCEEEEEc
Confidence 367789999999994 78999999997742 22 6899999865 2 112 2345788899999999999988
Q ss_pred cc
Q 016351 184 HA 185 (391)
Q Consensus 184 ~~ 185 (391)
..
T Consensus 244 D~ 245 (282)
T 2wk1_A 244 DY 245 (282)
T ss_dssp SC
T ss_pred CC
Confidence 75
|
| >3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=98.33 E-value=8.6e-07 Score=89.15 Aligned_cols=103 Identities=16% Similarity=-0.012 Sum_probs=74.4
Q ss_pred CEEEEECCcccHHHHHHHHc--------C--------CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC-
Q 016351 80 KTVLDVGTGSGILAIWSAQA--------G--------ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL- 141 (391)
Q Consensus 80 ~~VLDlGcGtG~l~~~~a~~--------g--------~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~- 141 (391)
.+|||.+||||.+.+.+++. . ..+++|+|++ .++..|+.++..+++...+.+.++|....+.
T Consensus 246 ~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~i~i~~gDtL~~~~~ 325 (544)
T 3khk_A 246 GRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRGIDFNFGKKNADSFLDDQH 325 (544)
T ss_dssp EEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTTCCCBCCSSSCCTTTSCSC
T ss_pred CeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhCCCcccceeccchhcCccc
Confidence 38999999999887776542 0 2379999999 8999999999999987666568888765432
Q ss_pred -CCcccEEEEccccccc--c-----------------------Ccc-hHHHHHHHHhccccCCeEEEc
Q 016351 142 -PEKVDVIISEWMGYFL--L-----------------------RES-MFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 142 -~~~~D~Ivse~~~~~~--~-----------------------~e~-~l~~~l~~~~~~L~~gG~ii~ 182 (391)
..+||+|++++.-..- . ... .--.++..+.++|+|||++.+
T Consensus 326 ~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~ai 393 (544)
T 3khk_A 326 PDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLHMLYHLAPTGSMAL 393 (544)
T ss_dssp TTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHHHHHTEEEEEEEEE
T ss_pred ccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHHHHHHhccCceEEE
Confidence 2789999998742211 0 000 111467778899999998653
|
| >3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=98.28 E-value=3.4e-06 Score=84.69 Aligned_cols=105 Identities=19% Similarity=0.076 Sum_probs=78.3
Q ss_pred CCCCEEEEECCcccHHHHHHHHc----CCCeEEEEech-HHHHHHHHHHHHcCCC-CcEEEEEcccccCC----CCCccc
Q 016351 77 FQGKTVLDVGTGSGILAIWSAQA----GARKVYAVEAT-KMSDHARTLVKANNLQ-DVVEVIEGSVEDIV----LPEKVD 146 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~l~~~~a~~----g~~~V~avD~s-~~~~~a~~~~~~~~~~-~~v~~i~~d~~~~~----~~~~~D 146 (391)
.++.+|||.+||||.+.+.+++. +..+++|+|++ .++..|+.++..+|+. +.+.+.++|..... ...+||
T Consensus 220 ~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~~~~I~~gDtL~~d~p~~~~~~fD 299 (542)
T 3lkd_A 220 KQGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVPIENQFLHNADTLDEDWPTQEPTNFD 299 (542)
T ss_dssp CTTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCTTTSCSCCSSCCCBS
T ss_pred CCCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCCcCccceEecceeccccccccccccc
Confidence 35679999999999988887776 24589999999 8999999999989885 35899999987652 137899
Q ss_pred EEEEcccccccc-Cc------------------ch-HHHHHHHHhcccc-CCeEEE
Q 016351 147 VIISEWMGYFLL-RE------------------SM-FDSVICARDRWLK-PTGVMY 181 (391)
Q Consensus 147 ~Ivse~~~~~~~-~e------------------~~-l~~~l~~~~~~L~-~gG~ii 181 (391)
+|++++.-..-. .. .. --.++..+.++|+ +||++.
T Consensus 300 ~IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~gGr~a 355 (542)
T 3lkd_A 300 GVLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQDNGVMA 355 (542)
T ss_dssp EEEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTTTCEEE
T ss_pred EEEecCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCCceeEE
Confidence 999987422100 00 00 0136777788999 999864
|
| >3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A* | Back alignment and structure |
|---|
Probab=98.26 E-value=1.4e-06 Score=82.78 Aligned_cols=120 Identities=18% Similarity=0.255 Sum_probs=84.9
Q ss_pred HHHHHHHHhcC-CCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHc---CC----CCcEEEEEc
Q 016351 64 DAYFNSIFQNK-HHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKAN---NL----QDVVEVIEG 134 (391)
Q Consensus 64 ~~~~~~i~~~~-~~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~---~~----~~~v~~i~~ 134 (391)
..|.+.+.... -..++++||-||.|.|..+..+.+....+|+.||++ .+++.+++.+... .+ .++++++.+
T Consensus 190 ~~Y~e~l~h~~l~~~~pkrVLIIGgGdG~~~revlkh~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~ 269 (381)
T 3c6k_A 190 LAYTRAIMGSGKEDYTGKDVLILGGGDGGILCEIVKLKPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIE 269 (381)
T ss_dssp HHHHHHHTTTTCCCCTTCEEEEEECTTCHHHHHHHTTCCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEES
T ss_pred HHHHHHHHHHHhhcCCCCeEEEECCCcHHHHHHHHhcCCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehH
Confidence 34666554322 123468999999999999999999877899999999 8999999875321 11 135899999
Q ss_pred ccccCC-----CCCcccEEEEcccccccc------Cc-chHHHHHHHHhccccCCeEEEcc
Q 016351 135 SVEDIV-----LPEKVDVIISEWMGYFLL------RE-SMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 135 d~~~~~-----~~~~~D~Ivse~~~~~~~------~e-~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
|...+- ..++||+||.+....... .. .-...+++.+++.|+|||+++..
T Consensus 270 Da~~fl~~~~~~~~~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~Q 330 (381)
T 3c6k_A 270 DCIPVLKRYAKEGREFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQ 330 (381)
T ss_dssp CHHHHHHHHHHHTCCEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred HHHHHHHhhhhccCceeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEEe
Confidence 987642 126899999986432111 11 11256788899999999998854
|
| >3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A* | Back alignment and structure |
|---|
Probab=98.25 E-value=7.2e-07 Score=78.12 Aligned_cols=99 Identities=17% Similarity=0.219 Sum_probs=67.3
Q ss_pred CCCCCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEc-ccccCCCCCcccEEEEc
Q 016351 75 HHFQGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEG-SVEDIVLPEKVDVIISE 151 (391)
Q Consensus 75 ~~~~~~~VLDlGcGtG~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~-d~~~~~~~~~~D~Ivse 151 (391)
...++.+||||||++|.++..++.. |+++|+|+|+. .-.+ --..++..|++ .|+|+++ |+..++. .++|+|+|+
T Consensus 75 ~l~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe-~P~~~~s~gwn-~v~fk~gvDv~~~~~-~~~DtllcD 151 (267)
T 3p8z_A 75 MVIPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHE-EPVPMSTYGWN-IVKLMSGKDVFYLPP-EKCDTLLCD 151 (267)
T ss_dssp SSCCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSC-CCCCCCCTTTT-SEEEECSCCGGGCCC-CCCSEEEEC
T ss_pred CCCCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCcc-CcchhhhcCcC-ceEEEeccceeecCC-ccccEEEEe
Confidence 4557789999999999999977765 88899999987 3110 00112334554 4999999 9877653 789999998
Q ss_pred cccccccCc----chHHHHHHHHhccccCC
Q 016351 152 WMGYFLLRE----SMFDSVICARDRWLKPT 177 (391)
Q Consensus 152 ~~~~~~~~e----~~l~~~l~~~~~~L~~g 177 (391)
+-......+ ..+ .+|+-+.++|+++
T Consensus 152 IgeSs~~~~vE~~Rtl-rvLela~~wL~~~ 180 (267)
T 3p8z_A 152 IGESSPSPTVEESRTI-RVLKMVEPWLKNN 180 (267)
T ss_dssp CCCCCSCHHHHHHHHH-HHHHHHGGGCSSC
T ss_pred cCCCCCChhhhhhHHH-HHHHHHHHhcccC
Confidence 643222211 112 2566678999983
|
| >3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus} | Back alignment and structure |
|---|
Probab=98.23 E-value=3.5e-07 Score=82.68 Aligned_cols=106 Identities=13% Similarity=0.106 Sum_probs=65.6
Q ss_pred CCCCCCCEEEEECCcccHHHHHHHH-cCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEc-ccccCCCCCcccEEEE
Q 016351 74 KHHFQGKTVLDVGTGSGILAIWSAQ-AGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEG-SVEDIVLPEKVDVIIS 150 (391)
Q Consensus 74 ~~~~~~~~VLDlGcGtG~l~~~~a~-~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~-d~~~~~~~~~~D~Ivs 150 (391)
....++.+|||||||.|.++..+++ .++..|+|+|++ .+...+... ...+. +.+.+... |+..+. ++++|+|+|
T Consensus 86 ~~Lk~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~~~pi~~-~~~g~-~ii~~~~~~dv~~l~-~~~~DvVLS 162 (282)
T 3gcz_A 86 GYVKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKPIMR-TTLGW-NLIRFKDKTDVFNME-VIPGDTLLC 162 (282)
T ss_dssp TSCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCC-CBTTG-GGEEEECSCCGGGSC-CCCCSEEEE
T ss_pred cCCCCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCcccccccc-ccCCC-ceEEeeCCcchhhcC-CCCcCEEEe
Confidence 3445677999999999999999885 477789999998 642222110 01111 22333322 443332 379999999
Q ss_pred ccccccccCcc---hHHHHHHHHhccccCC--eEEEc
Q 016351 151 EWMGYFLLRES---MFDSVICARDRWLKPT--GVMYP 182 (391)
Q Consensus 151 e~~~~~~~~e~---~l~~~l~~~~~~L~~g--G~ii~ 182 (391)
+.......... ....+++-+.++|+|| |.|+.
T Consensus 163 DmApnsG~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~ 199 (282)
T 3gcz_A 163 DIGESSPSIAVEEQRTLRVLNCAKQWLQEGNYTEFCI 199 (282)
T ss_dssp CCCCCCSCHHHHHHHHHHHHHHHHHHHHHHCCCEEEE
T ss_pred cCccCCCChHHHHHHHHHHHHHHHHHcCCCCCCcEEE
Confidence 87544211111 1123477778999999 98874
|
| >2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.23 E-value=1.7e-06 Score=78.52 Aligned_cols=105 Identities=18% Similarity=0.141 Sum_probs=70.5
Q ss_pred CCCEEEEECCcccHHHHHHHHc-------CC------CeEEEEechH----HH-----------HHHHHHHHHc------
Q 016351 78 QGKTVLDVGTGSGILAIWSAQA-------GA------RKVYAVEATK----MS-----------DHARTLVKAN------ 123 (391)
Q Consensus 78 ~~~~VLDlGcGtG~l~~~~a~~-------g~------~~V~avD~s~----~~-----------~~a~~~~~~~------ 123 (391)
+..+|||||+|+|..++.+++. +. .+++++|..+ .+ ..|++.++..
T Consensus 60 ~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~g 139 (257)
T 2qy6_A 60 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG 139 (257)
T ss_dssp SEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCSE
T ss_pred CCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccccc
Confidence 4579999999999988776543 22 3799999642 22 2556665541
Q ss_pred ----CCC---CcEEEEEcccccC-C-CCC----cccEEEEccccccccCcchHHHHHHHHhccccCCeEEEc
Q 016351 124 ----NLQ---DVVEVIEGSVEDI-V-LPE----KVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 124 ----~~~---~~v~~i~~d~~~~-~-~~~----~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~ 182 (391)
.+. .+++++.+|+.+. + .+. .||+|+.+.+...-..+---..++..+.++|+|||+++.
T Consensus 140 ~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~fsp~~~p~lw~~~~l~~l~~~L~pGG~l~t 211 (257)
T 2qy6_A 140 CHRLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLAT 211 (257)
T ss_dssp EEEEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEECSSCTTTCGGGCCHHHHHHHHHHEEEEEEEEE
T ss_pred hhheeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEECCCCcccChhhcCHHHHHHHHHHcCCCcEEEE
Confidence 121 3588999998884 2 222 799999876433222111135689999999999999884
|
| >4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A* | Back alignment and structure |
|---|
Probab=98.20 E-value=4.4e-06 Score=79.36 Aligned_cols=115 Identities=16% Similarity=0.068 Sum_probs=87.2
Q ss_pred CCCCCCCEEEEECCcccHHHHHHHHcCC-CeEEEEech-HHHHHHHHHHHHcCCC-----CcEEEEEcccccCC--CCCc
Q 016351 74 KHHFQGKTVLDVGTGSGILAIWSAQAGA-RKVYAVEAT-KMSDHARTLVKANNLQ-----DVVEVIEGSVEDIV--LPEK 144 (391)
Q Consensus 74 ~~~~~~~~VLDlGcGtG~l~~~~a~~g~-~~V~avD~s-~~~~~a~~~~~~~~~~-----~~v~~i~~d~~~~~--~~~~ 144 (391)
+...++.+|||+.||.|.=+..++..+. ..|+|+|++ .-+..+++++++.+.. +++.+...|.+.+. .++.
T Consensus 144 L~~~pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~~~~~~~ 223 (359)
T 4fzv_A 144 LGLQPGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGELEGDT 223 (359)
T ss_dssp HCCCTTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGHHHHSTTC
T ss_pred hCCCCCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhcchhcccc
Confidence 3456789999999999999988888754 379999999 7788889999887653 45899999988763 3478
Q ss_pred ccEEEEccccccc----cCc-----------------chHHHHHHHHhccccCCeEEEcccceeE
Q 016351 145 VDVIISEWMGYFL----LRE-----------------SMFDSVICARDRWLKPTGVMYPSHARMW 188 (391)
Q Consensus 145 ~D~Ivse~~~~~~----~~e-----------------~~l~~~l~~~~~~L~~gG~ii~~~~~~~ 188 (391)
||.|+++...+.. ... .....+|....++|||||+++-+.+++.
T Consensus 224 fD~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVYsTCSl~ 288 (359)
T 4fzv_A 224 YDRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYSTCSLS 288 (359)
T ss_dssp EEEEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEESCCC
T ss_pred CCEEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCc
Confidence 9999998754331 000 0124677788899999999997766644
|
| >3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus} | Back alignment and structure |
|---|
Probab=98.12 E-value=4.2e-06 Score=86.19 Aligned_cols=106 Identities=12% Similarity=0.042 Sum_probs=71.4
Q ss_pred CCCEEEEECCcccHHHHHHHHcC----CCeEEEEech-HHHHHH--HHHHHHcCCCC---cEEEEEcccccCC--CCCcc
Q 016351 78 QGKTVLDVGTGSGILAIWSAQAG----ARKVYAVEAT-KMSDHA--RTLVKANNLQD---VVEVIEGSVEDIV--LPEKV 145 (391)
Q Consensus 78 ~~~~VLDlGcGtG~l~~~~a~~g----~~~V~avD~s-~~~~~a--~~~~~~~~~~~---~v~~i~~d~~~~~--~~~~~ 145 (391)
++.+|||.|||+|.+.+.+++.. ..+++|+|++ .++..| +.++..+.+.. ...+...|+.+.. ..++|
T Consensus 321 ~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~L~~~~~~~~kF 400 (878)
T 3s1s_A 321 EDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSLNPEDFANV 400 (878)
T ss_dssp TTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEECCCGGGCCGGGGTTE
T ss_pred CCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCCCcceEEecchhcccccccCCC
Confidence 56899999999999999988763 2379999999 888888 55554433321 1355666776632 22789
Q ss_pred cEEEEcccccc-ccCc-------------------------chHHHHHHHHhccccCCeEEEcc
Q 016351 146 DVIISEWMGYF-LLRE-------------------------SMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 146 D~Ivse~~~~~-~~~e-------------------------~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
|+||+++.-.. .... .....++..+.++|++||++.+.
T Consensus 401 DVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKpGGrLAfI 464 (878)
T 3s1s_A 401 SVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQDGTVISAI 464 (878)
T ss_dssp EEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCTTCEEEEE
T ss_pred CEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcCCCcEEEEE
Confidence 99999884311 0000 01234567778899999987643
|
| >4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A* | Back alignment and structure |
|---|
Probab=98.08 E-value=1.1e-05 Score=76.33 Aligned_cols=69 Identities=13% Similarity=0.151 Sum_probs=56.5
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCCCeEEEEechHHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-CcccEEEEccc
Q 016351 77 FQGKTVLDVGTGSGILAIWSAQAGARKVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIISEWM 153 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~-~~~D~Ivse~~ 153 (391)
.++.+||||||.+|.++..+++.|. +|+|||..+|....+ .. .+|+++++|...+.++ .++|+|+|+..
T Consensus 210 ~~G~~vlDLGAaPGGWT~~l~~rg~-~V~aVD~~~l~~~l~----~~---~~V~~~~~d~~~~~~~~~~~D~vvsDm~ 279 (375)
T 4auk_A 210 ANGMWAVDLGACPGGWTYQLVKRNM-WVYSVDNGPMAQSLM----DT---GQVTWLREDGFKFRPTRSNISWMVCDMV 279 (375)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHTTC-EEEEECSSCCCHHHH----TT---TCEEEECSCTTTCCCCSSCEEEEEECCS
T ss_pred CCCCEEEEeCcCCCHHHHHHHHCCC-EEEEEEhhhcChhhc----cC---CCeEEEeCccccccCCCCCcCEEEEcCC
Confidence 5789999999999999999999987 799999876543322 12 3499999999988766 68999999874
|
| >3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus} | Back alignment and structure |
|---|
Probab=98.05 E-value=1.1e-05 Score=73.03 Aligned_cols=104 Identities=17% Similarity=0.179 Sum_probs=68.3
Q ss_pred CCCCCCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEc-ccccCCCCCcccEEEE
Q 016351 74 KHHFQGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEG-SVEDIVLPEKVDVIIS 150 (391)
Q Consensus 74 ~~~~~~~~VLDlGcGtG~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~-d~~~~~~~~~~D~Ivs 150 (391)
....++.+||||||++|.++..++.. |+++|+|+|+. .-.+. -..++..+++ .|.++.+ |+..++. .++|+|+|
T Consensus 90 ~~l~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he~-P~~~~ql~w~-lV~~~~~~Dv~~l~~-~~~D~ivc 166 (321)
T 3lkz_A 90 RFLEPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEE-PQLVQSYGWN-IVTMKSGVDVFYRPS-ECCDTLLC 166 (321)
T ss_dssp TSCCCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSCC-CCCCCBTTGG-GEEEECSCCTTSSCC-CCCSEEEE
T ss_pred cCCCCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCccC-cchhhhcCCc-ceEEEeccCHhhCCC-CCCCEEEE
Confidence 34456789999999999999976665 88889999997 41100 0001122332 3899998 8888764 78999999
Q ss_pred ccccccccCc----chHHHHHHHHhccccCC-eEEE
Q 016351 151 EWMGYFLLRE----SMFDSVICARDRWLKPT-GVMY 181 (391)
Q Consensus 151 e~~~~~~~~e----~~l~~~l~~~~~~L~~g-G~ii 181 (391)
+.-......+ ..+ .+|+-+.++|+++ |-|+
T Consensus 167 DigeSs~~~~ve~~Rtl-~vLel~~~wL~~~~~~f~ 201 (321)
T 3lkz_A 167 DIGESSSSAEVEEHRTI-RVLEMVEDWLHRGPREFC 201 (321)
T ss_dssp CCCCCCSCHHHHHHHHH-HHHHHHHHHHTTCCCEEE
T ss_pred ECccCCCChhhhhhHHH-HHHHHHHHHhccCCCcEE
Confidence 8642222211 112 2566667899888 6554
|
| >3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A* | Back alignment and structure |
|---|
Probab=97.97 E-value=3.7e-06 Score=76.49 Aligned_cols=105 Identities=14% Similarity=0.110 Sum_probs=64.1
Q ss_pred CCCCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEc-ccccCCCCCcccEEEEcc
Q 016351 76 HFQGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEG-SVEDIVLPEKVDVIISEW 152 (391)
Q Consensus 76 ~~~~~~VLDlGcGtG~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~-d~~~~~~~~~~D~Ivse~ 152 (391)
..++.+||||||++|.++..+++. ++..|+|+|+. .+...... ....+. +.+.+..+ |+..+. ++++|+|+|+.
T Consensus 79 ~~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~~~~~P~~-~~~~~~-~iv~~~~~~di~~l~-~~~~DlVlsD~ 155 (300)
T 3eld_A 79 LRITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGHEKPIH-MQTLGW-NIVKFKDKSNVFTMP-TEPSDTLLCDI 155 (300)
T ss_dssp CCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCC-CCBTTG-GGEEEECSCCTTTSC-CCCCSEEEECC
T ss_pred CCCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEecccccccccc-ccccCC-ceEEeecCceeeecC-CCCcCEEeecC
Confidence 346789999999999999999975 77789999997 43111000 000011 22333322 333322 37899999987
Q ss_pred ccccccCcc---hHHHHHHHHhccccCC-eEEEcc
Q 016351 153 MGYFLLRES---MFDSVICARDRWLKPT-GVMYPS 183 (391)
Q Consensus 153 ~~~~~~~e~---~l~~~l~~~~~~L~~g-G~ii~~ 183 (391)
......... ....+++-+.++|+|| |.|+.-
T Consensus 156 APnsG~~~~D~~rs~~LL~~A~~~LkpG~G~FV~K 190 (300)
T 3eld_A 156 GESSSNPLVERDRTMKVLENFERWKHVNTENFCVK 190 (300)
T ss_dssp CCCCSSHHHHHHHHHHHHHHHHHHCCTTCCEEEEE
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEE
Confidence 544211111 1123477778999999 988843
|
| >1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23 | Back alignment and structure |
|---|
Probab=97.96 E-value=1.4e-05 Score=72.62 Aligned_cols=74 Identities=19% Similarity=0.243 Sum_probs=60.4
Q ss_pred cCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC-----CC-Ccc
Q 016351 73 NKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV-----LP-EKV 145 (391)
Q Consensus 73 ~~~~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~-----~~-~~~ 145 (391)
.+...++..+||.+||.|..+..+++.+. +|+|+|.+ .+++.|++ .+. ++++++++++.++. .. +++
T Consensus 17 ~L~~~~gg~~VD~T~G~GGHS~~il~~~g-~VigiD~Dp~Ai~~A~~-L~~----~rv~lv~~~f~~l~~~L~~~g~~~v 90 (285)
T 1wg8_A 17 LLAVRPGGVYVDATLGGAGHARGILERGG-RVIGLDQDPEAVARAKG-LHL----PGLTVVQGNFRHLKRHLAALGVERV 90 (285)
T ss_dssp HHTCCTTCEEEETTCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHH-TCC----TTEEEEESCGGGHHHHHHHTTCSCE
T ss_pred hhCCCCCCEEEEeCCCCcHHHHHHHHCCC-EEEEEeCCHHHHHHHHh-hcc----CCEEEEECCcchHHHHHHHcCCCCc
Confidence 33445778999999999999999999844 89999999 88988887 533 46999999998873 12 579
Q ss_pred cEEEEcc
Q 016351 146 DVIISEW 152 (391)
Q Consensus 146 D~Ivse~ 152 (391)
|.|+.++
T Consensus 91 DgIL~DL 97 (285)
T 1wg8_A 91 DGILADL 97 (285)
T ss_dssp EEEEEEC
T ss_pred CEEEeCC
Confidence 9999875
|
| >2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A* | Back alignment and structure |
|---|
Probab=97.91 E-value=2.9e-05 Score=69.07 Aligned_cols=107 Identities=14% Similarity=0.176 Sum_probs=63.5
Q ss_pred HHhcCCCCCCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHH-cCCCCcEEEEEc-ccccCCCCCcc
Q 016351 70 IFQNKHHFQGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKA-NNLQDVVEVIEG-SVEDIVLPEKV 145 (391)
Q Consensus 70 i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~-~~~~~~v~~i~~-d~~~~~~~~~~ 145 (391)
|.+..-..++.+||||||+.|.++..+++. +...|.|..+. +. . ....... .|+ +-++|+++ |+.++. +.++
T Consensus 65 IdeK~likpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~-~-~~P~~~~~~Gv-~~i~~~~G~Df~~~~-~~~~ 140 (269)
T 2px2_A 65 LVERRFVQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPG-H-EEPMLMQSYGW-NIVTMKSGVDVFYKP-SEIS 140 (269)
T ss_dssp HHHTTSCCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTT-S-CCCCCCCSTTG-GGEEEECSCCGGGSC-CCCC
T ss_pred HHHcCCCCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEcccc-c-cCCCcccCCCc-eEEEeeccCCccCCC-CCCC
Confidence 443333456789999999999999999986 22234444444 21 0 0000000 111 22566668 999864 4689
Q ss_pred cEEEEccccccccCc----chHHHHHHHHhccccCCe-EEE
Q 016351 146 DVIISEWMGYFLLRE----SMFDSVICARDRWLKPTG-VMY 181 (391)
Q Consensus 146 D~Ivse~~~~~~~~e----~~l~~~l~~~~~~L~~gG-~ii 181 (391)
|+|+||......... ..+. .++-+.++|+||| .|+
T Consensus 141 DvVLSDMAPnSG~~~vD~~Rs~~-aL~~A~~~Lk~gG~~Fv 180 (269)
T 2px2_A 141 DTLLCDIGESSPSAEIEEQRTLR-ILEMVSDWLSRGPKEFC 180 (269)
T ss_dssp SEEEECCCCCCSCHHHHHHHHHH-HHHHHHHHHTTCCSEEE
T ss_pred CEEEeCCCCCCCccHHHHHHHHH-HHHHHHHHhhcCCcEEE
Confidence 999998754322111 1122 4666678999999 666
|
| >2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str} | Back alignment and structure |
|---|
Probab=97.88 E-value=3.6e-05 Score=62.62 Aligned_cols=66 Identities=12% Similarity=0.189 Sum_probs=49.2
Q ss_pred HHHHHHhcCCCCCCCEEEEECCccc-HHHHHHHH-cCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC
Q 016351 66 YFNSIFQNKHHFQGKTVLDVGTGSG-ILAIWSAQ-AGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP 142 (391)
Q Consensus 66 ~~~~i~~~~~~~~~~~VLDlGcGtG-~l~~~~a~-~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~ 142 (391)
+.+.|.+.. .++.+|||||||+| ..+..+++ .|. .|+++|++ ..+. ++..|+.+..+.
T Consensus 25 LaeYI~~~~--~~~~rVlEVG~G~g~~vA~~La~~~g~-~V~atDInp~Av~----------------~v~dDiF~P~~~ 85 (153)
T 2k4m_A 25 LAVYIIRCS--GPGTRVVEVGAGRFLYVSDYIRKHSKV-DLVLTDIKPSHGG----------------IVRDDITSPRME 85 (153)
T ss_dssp HHHHHHHHS--CSSSEEEEETCTTCCHHHHHHHHHSCC-EEEEECSSCSSTT----------------EECCCSSSCCHH
T ss_pred HHHHHHhcC--CCCCcEEEEccCCChHHHHHHHHhCCC-eEEEEECCccccc----------------eEEccCCCCccc
Confidence 344444443 24579999999999 59999997 787 79999999 4332 888898875443
Q ss_pred --CcccEEEE
Q 016351 143 --EKVDVIIS 150 (391)
Q Consensus 143 --~~~D~Ivs 150 (391)
+.||+|.+
T Consensus 86 ~Y~~~DLIYs 95 (153)
T 2k4m_A 86 IYRGAALIYS 95 (153)
T ss_dssp HHTTEEEEEE
T ss_pred ccCCcCEEEE
Confidence 58999976
|
| >3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus} | Back alignment and structure |
|---|
Probab=97.75 E-value=6.1e-05 Score=68.10 Aligned_cols=108 Identities=14% Similarity=0.090 Sum_probs=71.1
Q ss_pred hHhHHHHHHHHHh-cCCCCCCCEEEEECC------cccHHHHHHHHcCCC--eEEEEechHHHHHHHHHHHHcCCCCcEE
Q 016351 60 RVRMDAYFNSIFQ-NKHHFQGKTVLDVGT------GSGILAIWSAQAGAR--KVYAVEATKMSDHARTLVKANNLQDVVE 130 (391)
Q Consensus 60 ~~r~~~~~~~i~~-~~~~~~~~~VLDlGc------GtG~l~~~~a~~g~~--~V~avD~s~~~~~a~~~~~~~~~~~~v~ 130 (391)
-..|..+.+.+.. .+....+.+|||+|+ -.|. ..+.+.+.. .|+++|+.++.. ..+ .
T Consensus 90 v~kytqlcqyl~~~~~~vp~gmrVLDLGA~s~kg~APGS--~VLr~~~p~g~~VVavDL~~~~s----------da~--~ 155 (344)
T 3r24_A 90 VAKYTQLCQYLNTLTLAVPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDFVS----------DAD--S 155 (344)
T ss_dssp HHHHHHHHHHHTTSCCCCCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCCBC----------SSS--E
T ss_pred HHHHHHHHHHhccccEeecCCCEEEeCCCCCCCCCCCcH--HHHHHhCCCCcEEEEeeCccccc----------CCC--e
Confidence 4556666666643 233445789999997 3444 344444443 899999985321 112 4
Q ss_pred EEEcccccCCCCCcccEEEEccccccc---cC-----cchHHHHHHHHhccccCCeEEE
Q 016351 131 VIEGSVEDIVLPEKVDVIISEWMGYFL---LR-----ESMFDSVICARDRWLKPTGVMY 181 (391)
Q Consensus 131 ~i~~d~~~~~~~~~~D~Ivse~~~~~~---~~-----e~~l~~~l~~~~~~L~~gG~ii 181 (391)
++++|...+....+||+|+|+.....- .. ....+..++-+.+.|+|||.|+
T Consensus 156 ~IqGD~~~~~~~~k~DLVISDMAPNtTG~~D~d~~Rs~~L~ElALdfA~~~LkpGGsFv 214 (344)
T 3r24_A 156 TLIGDCATVHTANKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIA 214 (344)
T ss_dssp EEESCGGGEEESSCEEEEEECCCCTTSCSSCSCCCCCCTHHHHHHHHHHHHEEEEEEEE
T ss_pred EEEccccccccCCCCCEEEecCCCCcCCccccchhHHHHHHHHHHHHHHHhCcCCCEEE
Confidence 599998887666899999997642211 11 1235667777889999999887
|
| >3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.75 E-value=0.00019 Score=68.36 Aligned_cols=106 Identities=16% Similarity=0.174 Sum_probs=61.2
Q ss_pred CCEEEEECCcccHHHHHHHHc------------C----CCeEEEEech--HHHHHHHHHHHHc----------CCCCcEE
Q 016351 79 GKTVLDVGTGSGILAIWSAQA------------G----ARKVYAVEAT--KMSDHARTLVKAN----------NLQDVVE 130 (391)
Q Consensus 79 ~~~VLDlGcGtG~l~~~~a~~------------g----~~~V~avD~s--~~~~~a~~~~~~~----------~~~~~v~ 130 (391)
..+|+|+|||+|..++.++.. + .-+|+.-|+. +.-...+...... +....--
T Consensus 53 ~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~~ 132 (374)
T 3b5i_A 53 PFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRSY 132 (374)
T ss_dssp CEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBCS
T ss_pred ceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCce
Confidence 478999999999988876221 1 1257777765 3333332211100 0000112
Q ss_pred EEEccccc---CCCC-CcccEEEEccccccccCc-----------------------------------chHHHHHHHHh
Q 016351 131 VIEGSVED---IVLP-EKVDVIISEWMGYFLLRE-----------------------------------SMFDSVICARD 171 (391)
Q Consensus 131 ~i~~d~~~---~~~~-~~~D~Ivse~~~~~~~~e-----------------------------------~~l~~~l~~~~ 171 (391)
|+.+.... -.+| +++|+|+|....+.+... .++..+|+.+.
T Consensus 133 f~~gvpgSFy~rlfP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~ra 212 (374)
T 3b5i_A 133 FVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRARA 212 (374)
T ss_dssp EEEEEESCTTSCCSCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEecChhhhcccCCCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33332222 2334 899999996544443311 14566788999
Q ss_pred ccccCCeEEEccc
Q 016351 172 RWLKPTGVMYPSH 184 (391)
Q Consensus 172 ~~L~~gG~ii~~~ 184 (391)
+.|+|||++++..
T Consensus 213 ~eL~pGG~mvl~~ 225 (374)
T 3b5i_A 213 AEVKRGGAMFLVC 225 (374)
T ss_dssp HHEEEEEEEEEEE
T ss_pred HHhCCCCEEEEEE
Confidence 9999999998653
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=97.70 E-value=8.9e-05 Score=68.70 Aligned_cols=47 Identities=28% Similarity=0.356 Sum_probs=42.6
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcC
Q 016351 77 FQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANN 124 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~ 124 (391)
.++..|||++||+|..++.+++.|. +++|+|++ .+++.|+++++...
T Consensus 234 ~~~~~vlD~f~GsGt~~~~a~~~g~-~~~g~e~~~~~~~~a~~r~~~~~ 281 (297)
T 2zig_A 234 FVGDVVLDPFAGTGTTLIAAARWGR-RALGVELVPRYAQLAKERFAREV 281 (297)
T ss_dssp CTTCEEEETTCTTTHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHS
T ss_pred CCCCEEEECCCCCCHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHHHhc
Confidence 5788999999999999999999987 89999999 89999999987653
|
| >3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=97.27 E-value=0.001 Score=66.66 Aligned_cols=83 Identities=17% Similarity=0.153 Sum_probs=60.6
Q ss_pred HHhcCCCCCCCEEEEECCcccHHHHHHHHc----C----------CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEc
Q 016351 70 IFQNKHHFQGKTVLDVGTGSGILAIWSAQA----G----------ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEG 134 (391)
Q Consensus 70 i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~----g----------~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~ 134 (391)
|.+.+...++.+|+|-.||||.+.+.+.+. . ...++|+|++ .+...|+.++--+|... ..+..+
T Consensus 209 mv~l~~p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~lhg~~~-~~I~~~ 287 (530)
T 3ufb_A 209 MVEVMDPQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLLHGLEY-PRIDPE 287 (530)
T ss_dssp HHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHHHTCSC-CEEECS
T ss_pred HHHhhccCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHhcCCcc-cccccc
Confidence 333333445678999999999988776643 1 1259999999 88889988888888764 467788
Q ss_pred ccccCCC-----CCcccEEEEccc
Q 016351 135 SVEDIVL-----PEKVDVIISEWM 153 (391)
Q Consensus 135 d~~~~~~-----~~~~D~Ivse~~ 153 (391)
|....+. ..+||+|++++.
T Consensus 288 dtL~~~~~~~~~~~~fD~Il~NPP 311 (530)
T 3ufb_A 288 NSLRFPLREMGDKDRVDVILTNPP 311 (530)
T ss_dssp CTTCSCGGGCCGGGCBSEEEECCC
T ss_pred ccccCchhhhcccccceEEEecCC
Confidence 8765322 157999999875
|
| >2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A* | Back alignment and structure |
|---|
Probab=97.26 E-value=0.0014 Score=62.64 Aligned_cols=105 Identities=16% Similarity=0.157 Sum_probs=62.7
Q ss_pred CCEEEEECCcccHHHHHHHHc--------------C----CCeEEEEech--HHHHHHH-------HHHHHcCCCCcEEE
Q 016351 79 GKTVLDVGTGSGILAIWSAQA--------------G----ARKVYAVEAT--KMSDHAR-------TLVKANNLQDVVEV 131 (391)
Q Consensus 79 ~~~VLDlGcGtG~l~~~~a~~--------------g----~~~V~avD~s--~~~~~a~-------~~~~~~~~~~~v~~ 131 (391)
.-+|+|+||++|..++.+... + .-+|+.-|+. +.-...+ ...+..+-...--|
T Consensus 53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~g~~~~~~f 132 (384)
T 2efj_A 53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKENGRKIGSCL 132 (384)
T ss_dssp EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHTCCCTTSEE
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhhccCCCCceE
Confidence 468999999999988876654 1 1157777754 3211111 11122332112356
Q ss_pred EEcccccC---CCC-CcccEEEEccccccccCc------------------------------------chHHHHHHHHh
Q 016351 132 IEGSVEDI---VLP-EKVDVIISEWMGYFLLRE------------------------------------SMFDSVICARD 171 (391)
Q Consensus 132 i~~d~~~~---~~~-~~~D~Ivse~~~~~~~~e------------------------------------~~l~~~l~~~~ 171 (391)
+.+....+ .+| +++|+|+|....+.+... .++..+|+.+.
T Consensus 133 ~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~FL~~Ra 212 (384)
T 2efj_A 133 IGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFLRIHS 212 (384)
T ss_dssp EEECCSCTTSCCSCTTCEEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEecchhhhhccCCCCceEEEEecceeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66655443 344 899999996544443211 12334478889
Q ss_pred ccccCCeEEEcc
Q 016351 172 RWLKPTGVMYPS 183 (391)
Q Consensus 172 ~~L~~gG~ii~~ 183 (391)
+.|+|||+++..
T Consensus 213 ~eL~pGG~mvl~ 224 (384)
T 2efj_A 213 EELISRGRMLLT 224 (384)
T ss_dssp HHEEEEEEEEEE
T ss_pred HHhccCCeEEEE
Confidence 999999999854
|
| >2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59 | Back alignment and structure |
|---|
Probab=97.21 E-value=0.00014 Score=66.06 Aligned_cols=108 Identities=19% Similarity=0.121 Sum_probs=76.2
Q ss_pred HHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEccccc-C--
Q 016351 64 DAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVED-I-- 139 (391)
Q Consensus 64 ~~~~~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~-~-- 139 (391)
..|.+.|... .+..+||+-+|||.+++.+.+. ..+++.+|.+ ..++..+++++. .++++++..|... +
T Consensus 81 ~~yf~~l~~~----n~~~~LDlfaGSGaLgiEaLS~-~d~~vfvE~~~~a~~~L~~Nl~~---~~~~~V~~~D~~~~L~~ 152 (283)
T 2oo3_A 81 LEYISVIKQI----NLNSTLSYYPGSPYFAINQLRS-QDRLYLCELHPTEYNFLLKLPHF---NKKVYVNHTDGVSKLNA 152 (283)
T ss_dssp HHHHHHHHHH----SSSSSCCEEECHHHHHHHHSCT-TSEEEEECCSHHHHHHHTTSCCT---TSCEEEECSCHHHHHHH
T ss_pred HHHHHHHHHh----cCCCceeEeCCcHHHHHHHcCC-CCeEEEEeCCHHHHHHHHHHhCc---CCcEEEEeCcHHHHHHH
Confidence 4566666652 3456899999999999999984 4799999999 777777777754 3569999999655 2
Q ss_pred --CCCCcccEEEEccccccccCcchHHHHHHHHh--ccccCCeEEEc
Q 016351 140 --VLPEKVDVIISEWMGYFLLRESMFDSVICARD--RWLKPTGVMYP 182 (391)
Q Consensus 140 --~~~~~~D~Ivse~~~~~~~~e~~l~~~l~~~~--~~L~~gG~ii~ 182 (391)
+.++++|+|+.|+. |.. ......++..+. ..+.++|+++.
T Consensus 153 l~~~~~~fdLVfiDPP-Ye~--k~~~~~vl~~L~~~~~r~~~Gi~v~ 196 (283)
T 2oo3_A 153 LLPPPEKRGLIFIDPS-YER--KEEYKEIPYAIKNAYSKFSTGLYCV 196 (283)
T ss_dssp HCSCTTSCEEEEECCC-CCS--TTHHHHHHHHHHHHHHHCTTSEEEE
T ss_pred hcCCCCCccEEEECCC-CCC--CcHHHHHHHHHHHhCccCCCeEEEE
Confidence 22267999999884 221 123444454443 35678898774
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=97.08 E-value=0.00089 Score=60.63 Aligned_cols=48 Identities=21% Similarity=0.272 Sum_probs=41.7
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCC
Q 016351 77 FQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNL 125 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~ 125 (391)
.++..|||..||+|..++.+.+.|. +++|+|++ ..++.|+++++.+++
T Consensus 211 ~~~~~vlD~f~GsGtt~~~a~~~gr-~~ig~e~~~~~~~~~~~r~~~~~~ 259 (260)
T 1g60_A 211 NPNDLVLDCFMGSGTTAIVAKKLGR-NFIGCDMNAEYVNQANFVLNQLEI 259 (260)
T ss_dssp CTTCEEEESSCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHC---
T ss_pred CCCCEEEECCCCCCHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHHhccC
Confidence 5788999999999999999999987 89999999 899999999987653
|
| >1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=97.03 E-value=0.001 Score=62.86 Aligned_cols=81 Identities=16% Similarity=0.166 Sum_probs=57.6
Q ss_pred hcCChHhHHHHHHHHHhcC--CCCCCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEE
Q 016351 56 MLSDRVRMDAYFNSIFQNK--HHFQGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEV 131 (391)
Q Consensus 56 ml~d~~r~~~~~~~i~~~~--~~~~~~~VLDlGcGtG~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~ 131 (391)
.|.|..-.+...+++.-.- ...++..|||||.|.|.++..+++. .+++|++||++ .++...++.. . .+++++
T Consensus 34 FL~d~~i~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~-~---~~~l~i 109 (353)
T 1i4w_A 34 YLWNPTVYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKF-E---GSPLQI 109 (353)
T ss_dssp CBCCHHHHHHHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHT-T---TSSCEE
T ss_pred ccCCHHHHHHHHHhccCCcccCcCCCCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhc-c---CCCEEE
Confidence 4666655555444442110 0013589999999999999999986 45689999999 8888887765 2 245999
Q ss_pred EEcccccCC
Q 016351 132 IEGSVEDIV 140 (391)
Q Consensus 132 i~~d~~~~~ 140 (391)
+++|+..+.
T Consensus 110 i~~D~l~~~ 118 (353)
T 1i4w_A 110 LKRDPYDWS 118 (353)
T ss_dssp ECSCTTCHH
T ss_pred EECCccchh
Confidence 999997653
|
| >1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35 | Back alignment and structure |
|---|
Probab=96.86 E-value=0.0008 Score=63.65 Aligned_cols=104 Identities=18% Similarity=0.236 Sum_probs=63.3
Q ss_pred CEEEEECCcccHHHHHHHHc------------CC-----CeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEccccc---
Q 016351 80 KTVLDVGTGSGILAIWSAQA------------GA-----RKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVED--- 138 (391)
Q Consensus 80 ~~VLDlGcGtG~l~~~~a~~------------g~-----~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~--- 138 (391)
-+|+|+||++|..++.+... +. -+|+..|+. .....+-+.+....-.++.-|+.+....
T Consensus 53 ~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvpgSFy~ 132 (359)
T 1m6e_X 53 LAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSFYG 132 (359)
T ss_dssp ECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCSSS
T ss_pred eEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcccCCCEEEEecchhhhh
Confidence 57999999999776544332 21 268889977 4443333333221100123555554444
Q ss_pred CCCC-CcccEEEEccccccccC------------------------------cchHHHHHHHHhccccCCeEEEcc
Q 016351 139 IVLP-EKVDVIISEWMGYFLLR------------------------------ESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 139 ~~~~-~~~D~Ivse~~~~~~~~------------------------------e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
-.+| +++|+|+|....+.+.. +.++..+|+.+.+.|+|||+++..
T Consensus 133 rlfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~mvl~ 208 (359)
T 1m6e_X 133 RLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLT 208 (359)
T ss_dssp CCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEE
T ss_pred ccCCCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEE
Confidence 2345 89999999654333321 124567799999999999999855
|
| >3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.75 E-value=0.0038 Score=58.06 Aligned_cols=79 Identities=14% Similarity=0.139 Sum_probs=60.8
Q ss_pred HHHhcCCCCCCCEEEEECCcccHHHHHHHHc-C-CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC-----
Q 016351 69 SIFQNKHHFQGKTVLDVGTGSGILAIWSAQA-G-ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV----- 140 (391)
Q Consensus 69 ~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~-g-~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~----- 140 (391)
.+...+...++.+++|..||.|..+..+++. + ..+|+|+|.+ .+++.|+ ++ ..++++++++++.++.
T Consensus 48 Evl~~L~i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~-rL----~~~Rv~lv~~nF~~l~~~L~~ 122 (347)
T 3tka_A 48 EAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK-TI----DDPRFSIIHGPFSALGEYVAE 122 (347)
T ss_dssp HHHHHTCCCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHT-TC----CCTTEEEEESCGGGHHHHHHH
T ss_pred HHHHhhCCCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-hh----cCCcEEEEeCCHHHHHHHHHh
Confidence 3444555678899999999999999999886 3 3589999999 7888774 22 2467999999998862
Q ss_pred C--CCcccEEEEcc
Q 016351 141 L--PEKVDVIISEW 152 (391)
Q Consensus 141 ~--~~~~D~Ivse~ 152 (391)
. .+++|.|+.++
T Consensus 123 ~g~~~~vDgILfDL 136 (347)
T 3tka_A 123 RDLIGKIDGILLDL 136 (347)
T ss_dssp TTCTTCEEEEEEEC
T ss_pred cCCCCcccEEEECC
Confidence 1 13699999865
|
| >3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157} | Back alignment and structure |
|---|
Probab=96.59 E-value=0.003 Score=60.34 Aligned_cols=68 Identities=22% Similarity=0.143 Sum_probs=53.9
Q ss_pred CEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC---------CCcccEEE
Q 016351 80 KTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL---------PEKVDVII 149 (391)
Q Consensus 80 ~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~---------~~~~D~Iv 149 (391)
.+|||+.||.|.+++.+.++|...|.++|++ ..++..+.+.. + ..++++|+.++.. ...+|+|+
T Consensus 3 ~~vidLFsG~GGlslG~~~aG~~~v~avE~d~~a~~t~~~N~~-----~-~~~~~~DI~~~~~~~~~~~~~~~~~~D~i~ 76 (376)
T 3g7u_A 3 LNVIDLFSGVGGLSLGAARAGFDVKMAVEIDQHAINTHAINFP-----R-SLHVQEDVSLLNAEIIKGFFKNDMPIDGII 76 (376)
T ss_dssp CEEEEETCTTSHHHHHHHHHTCEEEEEECSCHHHHHHHHHHCT-----T-SEEECCCGGGCCHHHHHHHHCSCCCCCEEE
T ss_pred CeEEEEccCcCHHHHHHHHCCCcEEEEEeCCHHHHHHHHHhCC-----C-CceEecChhhcCHHHHHhhcccCCCeeEEE
Confidence 4799999999999999999999888999999 66665555432 2 6788999988731 35799999
Q ss_pred Eccc
Q 016351 150 SEWM 153 (391)
Q Consensus 150 se~~ 153 (391)
..+.
T Consensus 77 ggpP 80 (376)
T 3g7u_A 77 GGPP 80 (376)
T ss_dssp ECCC
T ss_pred ecCC
Confidence 8654
|
| >2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ... | Back alignment and structure |
|---|
Probab=96.55 E-value=0.0048 Score=57.72 Aligned_cols=68 Identities=18% Similarity=0.236 Sum_probs=53.5
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC--CcccEEEEcc
Q 016351 77 FQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP--EKVDVIISEW 152 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~--~~~D~Ivse~ 152 (391)
..+.+|||+.||.|.+++.+.++|+..|.++|++ ..++..+.+.... . ++|+.++... ..+|+|+..+
T Consensus 9 ~~~~~~~dLFaG~Gg~~~g~~~aG~~~v~~~e~d~~a~~t~~~N~~~~-----~---~~Di~~~~~~~~~~~D~l~~gp 79 (327)
T 2c7p_A 9 LTGLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMNFGEK-----P---EGDITQVNEKTIPDHDILCAGF 79 (327)
T ss_dssp TTTCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHHHHHHHHHSCC-----C---BSCGGGSCGGGSCCCSEEEEEC
T ss_pred cCCCcEEEECCCcCHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHcCCC-----C---cCCHHHcCHhhCCCCCEEEECC
Confidence 3457899999999999999999999889999999 7777777665321 1 6888887432 4699999854
|
| >1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26 | Back alignment and structure |
|---|
Probab=96.53 E-value=0.0014 Score=61.90 Aligned_cols=68 Identities=18% Similarity=0.187 Sum_probs=53.9
Q ss_pred CEEEEECCcccHHHHHHHHcC--CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC----CcccEEEEcc
Q 016351 80 KTVLDVGTGSGILAIWSAQAG--ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP----EKVDVIISEW 152 (391)
Q Consensus 80 ~~VLDlGcGtG~l~~~~a~~g--~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~----~~~D~Ivse~ 152 (391)
.+|||+.||.|.+++.+.++| +..|+++|++ .+++..+.+... ..++.+|+.++... ..+|+|+..+
T Consensus 3 ~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~~~------~~~~~~Di~~~~~~~~~~~~~D~l~~gp 76 (343)
T 1g55_A 3 LRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFPH------TQLLAKTIEGITLEEFDRLSFDMILMSP 76 (343)
T ss_dssp EEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTT------SCEECSCGGGCCHHHHHHHCCSEEEECC
T ss_pred CeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhccc------cccccCCHHHccHhHcCcCCcCEEEEcC
Confidence 579999999999999999999 5589999999 777777766532 45788999887421 2699999865
Q ss_pred c
Q 016351 153 M 153 (391)
Q Consensus 153 ~ 153 (391)
.
T Consensus 77 P 77 (343)
T 1g55_A 77 P 77 (343)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A | Back alignment and structure |
|---|
Probab=96.39 E-value=0.01 Score=55.67 Aligned_cols=119 Identities=13% Similarity=0.128 Sum_probs=79.5
Q ss_pred HhHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHc-CCCeEEEEechHHHHHHHHHHHHcC---------------
Q 016351 61 VRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQA-GARKVYAVEATKMSDHARTLVKANN--------------- 124 (391)
Q Consensus 61 ~r~~~~~~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~-g~~~V~avD~s~~~~~a~~~~~~~~--------------- 124 (391)
.|...+.+.+.+.+...+...|+.||||.......+... +..+++-||..++++.-++.+...+
T Consensus 80 ~Rt~~iD~~v~~fl~~~~~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~ 159 (334)
T 1rjd_A 80 LRTVGIDAAILEFLVANEKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDYNESVELKNSILRESEILRISLGLSKEDTAK 159 (334)
T ss_dssp HHHHHHHHHHHHHHHHCSSEEEEEETCTTCCTHHHHHHHCTTEEEEEEECHHHHHHHHHHHHHSHHHHHHHTCCSSCCCC
T ss_pred HHHHHHHHHHHHHHHHCCCcEEEEeCCCCccHHHHhcCcCCCCEEEECCCHHHHHHHHHHhhhccchhhhcccccccccc
Confidence 455555555554443235578999999999888887764 2225666666566666666666642
Q ss_pred -----CCCcEEEEEcccccCC----------CCCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEE
Q 016351 125 -----LQDVVEVIEGSVEDIV----------LPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMY 181 (391)
Q Consensus 125 -----~~~~v~~i~~d~~~~~----------~~~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii 181 (391)
..++..++..|+++.. .+....++++|.+...+..+ ....++..+.... |+|.++
T Consensus 160 ~~~~~~~~~~~~v~~DL~d~~w~~~ll~~~~d~~~Ptl~iaEgvL~YL~~~-~~~~ll~~ia~~~-~~~~~v 229 (334)
T 1rjd_A 160 SPFLIDQGRYKLAACDLNDITETTRLLDVCTKREIPTIVISECLLCYMHNN-ESQLLINTIMSKF-SHGLWI 229 (334)
T ss_dssp TTEEEECSSEEEEECCTTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHH-HHHHHHHHHHHHC-SSEEEE
T ss_pred cccccCCCceEEEecCCCCcHHHHHHHHhcCCCCCCEEEEEcchhhCCCHH-HHHHHHHHHHhhC-CCcEEE
Confidence 1356899999998741 12567899999887777655 4667788777665 677664
|
| >1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=95.92 E-value=0.0049 Score=58.63 Aligned_cols=96 Identities=18% Similarity=0.194 Sum_probs=61.8
Q ss_pred hcCCCCCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccC-----C-CC
Q 016351 72 QNKHHFQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDI-----V-LP 142 (391)
Q Consensus 72 ~~~~~~~~~~VLDlGcGt-G~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~-----~-~~ 142 (391)
+.....++.+||.+|+|. |.++..+|++ |+++|+++|.+ +.++.+++ .|.. .++..+-.++ . ..
T Consensus 184 ~~~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~~----lGa~---~vi~~~~~~~~~~~~~~~~ 256 (371)
T 1f8f_A 184 NALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQ----LGAT---HVINSKTQDPVAAIKEITD 256 (371)
T ss_dssp TTTCCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHH----HTCS---EEEETTTSCHHHHHHHHTT
T ss_pred hccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH----cCCC---EEecCCccCHHHHHHHhcC
Confidence 334456789999999987 8888888875 88679999998 66666654 3432 2232211111 0 11
Q ss_pred CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 143 EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 143 ~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
+.+|+|+-.. +. ...+....+.|+++|.++..
T Consensus 257 gg~D~vid~~-g~--------~~~~~~~~~~l~~~G~iv~~ 288 (371)
T 1f8f_A 257 GGVNFALEST-GS--------PEILKQGVDALGILGKIAVV 288 (371)
T ss_dssp SCEEEEEECS-CC--------HHHHHHHHHTEEEEEEEEEC
T ss_pred CCCcEEEECC-CC--------HHHHHHHHHHHhcCCEEEEe
Confidence 3699998521 11 23466677889999998754
|
| >2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56 | Back alignment and structure |
|---|
Probab=95.83 E-value=0.023 Score=54.85 Aligned_cols=62 Identities=11% Similarity=0.147 Sum_probs=49.2
Q ss_pred CCCCEEEEECCcccHHHHHHH-Hc-C-CCeEEEEech-HHHHHHHHHHHH--cCCC-CcEEEEEccccc
Q 016351 77 FQGKTVLDVGTGSGILAIWSA-QA-G-ARKVYAVEAT-KMSDHARTLVKA--NNLQ-DVVEVIEGSVED 138 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~l~~~~a-~~-g-~~~V~avD~s-~~~~~a~~~~~~--~~~~-~~v~~i~~d~~~ 138 (391)
.++.+|+|+||+.|..+..++ +. + ..+|+++|++ ...+..+++++. |+.. +++++++.-+-+
T Consensus 225 ~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n~~~~~N~~~~~~v~~~~~al~~ 293 (409)
T 2py6_A 225 SDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTDTNFASRITVHGCGAGE 293 (409)
T ss_dssp CSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTTSTTGGGEEEECSEECS
T ss_pred CCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhhhccCCCCCEEEEEeEEEC
Confidence 467899999999999999887 44 3 3689999999 888999999988 4333 568888765544
|
| >3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A* | Back alignment and structure |
|---|
Probab=95.45 E-value=0.017 Score=53.83 Aligned_cols=65 Identities=23% Similarity=0.250 Sum_probs=51.6
Q ss_pred EEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC--CcccEEEEcc
Q 016351 81 TVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP--EKVDVIISEW 152 (391)
Q Consensus 81 ~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~--~~~D~Ivse~ 152 (391)
+||||-||.|.+++.+.++|...|.++|++ .+++..+.+. + -+++.+|+.++... .++|+|+.-+
T Consensus 2 kvidLFsG~GG~~~G~~~aG~~~v~a~e~d~~a~~ty~~N~-----~--~~~~~~DI~~i~~~~~~~~D~l~ggp 69 (331)
T 3ubt_Y 2 NLISLFSGAGGLDLGFQKAGFRIICANEYDKSIWKTYESNH-----S--AKLIKGDISKISSDEFPKCDGIIGGP 69 (331)
T ss_dssp EEEEESCTTCHHHHHHHHTTCEEEEEEECCTTTHHHHHHHC-----C--SEEEESCGGGCCGGGSCCCSEEECCC
T ss_pred eEEEeCcCccHHHHHHHHCCCEEEEEEeCCHHHHHHHHHHC-----C--CCcccCChhhCCHhhCCcccEEEecC
Confidence 699999999999999999999888999999 6555555443 2 36788999988543 5799998744
|
| >3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=95.26 E-value=0.013 Score=56.49 Aligned_cols=98 Identities=17% Similarity=0.128 Sum_probs=58.4
Q ss_pred CCCCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEccccc-------CCCCCc
Q 016351 75 HHFQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVED-------IVLPEK 144 (391)
Q Consensus 75 ~~~~~~~VLDlGcGt-G~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~-------~~~~~~ 144 (391)
...++.+||-+|+|. |.++..+|++ |+.+|+++|.+ ..++.+++ .|.. .++..+-.+ +.....
T Consensus 210 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~----lGa~---~vi~~~~~~~~~~i~~~t~g~g 282 (404)
T 3ip1_A 210 GIRPGDNVVILGGGPIGLAAVAILKHAGASKVILSEPSEVRRNLAKE----LGAD---HVIDPTKENFVEAVLDYTNGLG 282 (404)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHH----HTCS---EEECTTTSCHHHHHHHHTTTCC
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----cCCC---EEEcCCCCCHHHHHHHHhCCCC
Confidence 456789999999976 7777777776 88789999988 66666654 3432 223221111 111246
Q ss_pred ccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 145 VDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 145 ~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
+|+|+--. +.- ...+..+++.+.+.++++|.++..
T Consensus 283 ~D~vid~~-g~~---~~~~~~~~~~l~~~~~~~G~iv~~ 317 (404)
T 3ip1_A 283 AKLFLEAT-GVP---QLVWPQIEEVIWRARGINATVAIV 317 (404)
T ss_dssp CSEEEECS-SCH---HHHHHHHHHHHHHCSCCCCEEEEC
T ss_pred CCEEEECC-CCc---HHHHHHHHHHHHhccCCCcEEEEe
Confidence 99998521 110 012233333333445999998854
|
| >2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A* | Back alignment and structure |
|---|
Probab=95.19 E-value=0.11 Score=47.92 Aligned_cols=122 Identities=10% Similarity=0.040 Sum_probs=81.3
Q ss_pred HhHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEechHHHHHHHHHHHHcCC--CCcEEEEEccccc
Q 016351 61 VRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEATKMSDHARTLVKANNL--QDVVEVIEGSVED 138 (391)
Q Consensus 61 ~r~~~~~~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s~~~~~a~~~~~~~~~--~~~v~~i~~d~~~ 138 (391)
.|...+.+++...+.. ....|++||||-=.....+......+|+=||.-.+++..++.+...+. ..+..++..|+++
T Consensus 86 ~Rt~~~d~~v~~~~~~-g~~QvV~LGaGlDTra~Rl~~~~~~~v~evD~P~vi~~k~~lL~~~~~~~~~~~~~v~~Dl~d 164 (310)
T 2uyo_A 86 VRTNFFDTYFNNAVID-GIRQFVILASGLDSRAYRLDWPTGTTVYEIDQPKVLAYKSTTLAEHGVTPTADRREVPIDLRQ 164 (310)
T ss_dssp HHHHHHHHHHHHHHHT-TCCEEEEETCTTCCHHHHSCCCTTCEEEEEECHHHHHHHHHHHHHTTCCCSSEEEEEECCTTS
T ss_pred HHHHHHHHHHHHHHHh-CCCeEEEeCCCCCchhhhccCCCCcEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEecchHh
Confidence 3444445555544322 225699999997666444432112378888855778888888876442 4568999999986
Q ss_pred CCC----------CCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcccc
Q 016351 139 IVL----------PEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 139 ~~~----------~~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~~ 185 (391)
.. +...-+++++.+.+++..+ ....+++.+...+.||+.++++..
T Consensus 165 -~~~~~l~~~g~d~~~Pt~~i~Egvl~Yl~~~-~~~~ll~~l~~~~~~gs~l~~d~~ 219 (310)
T 2uyo_A 165 -DWPPALRSAGFDPSARTAWLAEGLLMYLPAT-AQDGLFTEIGGLSAVGSRIAVETS 219 (310)
T ss_dssp -CHHHHHHHTTCCTTSCEEEEECSCGGGSCHH-HHHHHHHHHHHTCCTTCEEEEECC
T ss_pred -hHHHHHHhccCCCCCCEEEEEechHhhCCHH-HHHHHHHHHHHhCCCCeEEEEEec
Confidence 21 1345677888877777665 567889988888889998887654
|
| >3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A* | Back alignment and structure |
|---|
Probab=95.17 E-value=0.081 Score=48.61 Aligned_cols=104 Identities=13% Similarity=0.138 Sum_probs=63.7
Q ss_pred CCEEEEECCcccHHHHHHHH----cCC-C--eEEEEech----------HHHHHHHHHHHHcC-C-CC--cEEEEEcccc
Q 016351 79 GKTVLDVGTGSGILAIWSAQ----AGA-R--KVYAVEAT----------KMSDHARTLVKANN-L-QD--VVEVIEGSVE 137 (391)
Q Consensus 79 ~~~VLDlGcGtG~l~~~~a~----~g~-~--~V~avD~s----------~~~~~a~~~~~~~~-~-~~--~v~~i~~d~~ 137 (391)
.-+|||+|-|||+..+.+.+ .+. . +.+.+|.. ...+.......... + .+ ..+++.+|+.
T Consensus 97 ~~~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek~pl~~~~~~~~~~~~l~~~l~~~~p~~~~~~v~L~l~~GDa~ 176 (308)
T 3vyw_A 97 VIRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEKELLKEFPILPEPYREIHEFLLERVPEYEGERLSLKVLLGDAR 176 (308)
T ss_dssp EEEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEESSCCSCCCCCCTTSHHHHHHHHHHCSEEECSSEEEEEEESCHH
T ss_pred CcEEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecHHHHHhhHhchHhHHHHHHHHHHhCccccCCcEEEEEEechHH
Confidence 46899999999987654332 232 2 46777752 11222333332211 0 11 2567889987
Q ss_pred cC--CCC-CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEc
Q 016351 138 DI--VLP-EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 138 ~~--~~~-~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~ 182 (391)
+. .+. .++|+|+-|.+...-..+---..+++.+.++++|||++.-
T Consensus 177 ~~l~~l~~~~~Da~flDgFsP~kNPeLWs~e~f~~l~~~~~pgg~laT 224 (308)
T 3vyw_A 177 KRIKEVENFKADAVFHDAFSPYKNPELWTLDFLSLIKERIDEKGYWVS 224 (308)
T ss_dssp HHGGGCCSCCEEEEEECCSCTTTSGGGGSHHHHHHHHTTEEEEEEEEE
T ss_pred HHHhhhcccceeEEEeCCCCcccCcccCCHHHHHHHHHHhCCCcEEEE
Confidence 74 233 4799999887654433222236789999999999999873
|
| >3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=95.08 E-value=0.04 Score=52.06 Aligned_cols=96 Identities=21% Similarity=0.177 Sum_probs=61.8
Q ss_pred CCCCCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEE-----ccc----ccCCC
Q 016351 74 KHHFQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIE-----GSV----EDIVL 141 (391)
Q Consensus 74 ~~~~~~~~VLDlGcGt-G~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~-----~d~----~~~~~ 141 (391)
....++.+||-+|+|. |.++..+|++ |+++|+++|.+ ..++.+++. .. ..+.... .++ .++.-
T Consensus 175 ~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l-~~----~~~~~~~~~~~~~~~~~~v~~~t~ 249 (363)
T 3m6i_A 175 AGVRLGDPVLICGAGPIGLITMLCAKAAGACPLVITDIDEGRLKFAKEI-CP----EVVTHKVERLSAEESAKKIVESFG 249 (363)
T ss_dssp HTCCTTCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHH-CT----TCEEEECCSCCHHHHHHHHHHHTS
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-ch----hcccccccccchHHHHHHHHHHhC
Confidence 3456788999999976 7788888876 88669999999 777877765 21 1133321 111 11111
Q ss_pred CCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 142 PEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 142 ~~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
...+|+|+--. + . ...+....++|+++|+++..
T Consensus 250 g~g~Dvvid~~-g----~----~~~~~~~~~~l~~~G~iv~~ 282 (363)
T 3m6i_A 250 GIEPAVALECT-G----V----ESSIAAAIWAVKFGGKVFVI 282 (363)
T ss_dssp SCCCSEEEECS-C----C----HHHHHHHHHHSCTTCEEEEC
T ss_pred CCCCCEEEECC-C----C----hHHHHHHHHHhcCCCEEEEE
Confidence 35799999521 1 1 22456666789999998854
|
| >3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A | Back alignment and structure |
|---|
Probab=95.06 E-value=0.0074 Score=56.92 Aligned_cols=95 Identities=21% Similarity=0.255 Sum_probs=60.8
Q ss_pred cCCCCCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEccccc-------CCCC
Q 016351 73 NKHHFQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVED-------IVLP 142 (391)
Q Consensus 73 ~~~~~~~~~VLDlGcGt-G~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~-------~~~~ 142 (391)
.....++.+||-+|+|. |.++..+|++ |+++|+++|.+ ..++.+++ .|.. .++..+-.+ +...
T Consensus 161 ~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~----lGa~---~vi~~~~~~~~~~v~~~t~g 233 (352)
T 3fpc_A 161 LANIKLGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALE----YGAT---DIINYKNGDIVEQILKATDG 233 (352)
T ss_dssp HTTCCTTCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHHHHHHHHH----HTCC---EEECGGGSCHHHHHHHHTTT
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH----hCCc---eEEcCCCcCHHHHHHHHcCC
Confidence 34456788999999986 7888888886 77689999998 66666654 3432 233221111 1112
Q ss_pred CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 143 EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 143 ~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
..+|+|+-- .+. ...+....+.|+++|.++..
T Consensus 234 ~g~D~v~d~-~g~--------~~~~~~~~~~l~~~G~~v~~ 265 (352)
T 3fpc_A 234 KGVDKVVIA-GGD--------VHTFAQAVKMIKPGSDIGNV 265 (352)
T ss_dssp CCEEEEEEC-SSC--------TTHHHHHHHHEEEEEEEEEC
T ss_pred CCCCEEEEC-CCC--------hHHHHHHHHHHhcCCEEEEe
Confidence 469999852 111 12355566789999998844
|
| >2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=94.92 E-value=0.084 Score=50.53 Aligned_cols=101 Identities=16% Similarity=0.083 Sum_probs=61.7
Q ss_pred CCCCCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccC--------CCC
Q 016351 74 KHHFQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDI--------VLP 142 (391)
Q Consensus 74 ~~~~~~~~VLDlGcGt-G~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~--------~~~ 142 (391)
....++.+||.+|||. |.++..+|++ |+.+|+++|.+ +.++.++ ..|. +++..+-.++ ...
T Consensus 181 ~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~----~lGa----~~i~~~~~~~~~~~~~~~~~g 252 (398)
T 2dph_A 181 AGVKPGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERLKLLS----DAGF----ETIDLRNSAPLRDQIDQILGK 252 (398)
T ss_dssp TTCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHH----TTTC----EEEETTSSSCHHHHHHHHHSS
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHH----HcCC----cEEcCCCcchHHHHHHHHhCC
Confidence 4456789999999987 8888888875 88789999998 6666554 3443 2332221111 111
Q ss_pred CcccEEEEcccccccc-C-----cchHHHHHHHHhccccCCeEEEcc
Q 016351 143 EKVDVIISEWMGYFLL-R-----ESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 143 ~~~D~Ivse~~~~~~~-~-----e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
..+|+|+--. +.-.. . .......+....+.|+++|+++..
T Consensus 253 ~g~Dvvid~~-g~~~~~~~~~~~~~~~~~~~~~~~~~l~~gG~iv~~ 298 (398)
T 2dph_A 253 PEVDCGVDAV-GFEAHGLGDEANTETPNGALNSLFDVVRAGGAIGIP 298 (398)
T ss_dssp SCEEEEEECS-CTTCBCSGGGTTSBCTTHHHHHHHHHEEEEEEEECC
T ss_pred CCCCEEEECC-CCccccccccccccccHHHHHHHHHHHhcCCEEEEe
Confidence 3699998522 21100 0 000123466667889999998754
|
| >4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* | Back alignment and structure |
|---|
Probab=94.90 E-value=0.033 Score=52.86 Aligned_cols=97 Identities=26% Similarity=0.294 Sum_probs=60.6
Q ss_pred CCCCCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEccccc-C-----CCCCc
Q 016351 74 KHHFQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVED-I-----VLPEK 144 (391)
Q Consensus 74 ~~~~~~~~VLDlGcGt-G~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~-~-----~~~~~ 144 (391)
....++.+||-+|+|. |.++..+|++ |+++|+++|.+ ..++.+++ .|....+..-..|..+ + ..++.
T Consensus 178 ~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~----lGa~~vi~~~~~~~~~~i~~~~~~~~gg 253 (370)
T 4ej6_A 178 SGIKAGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEE----VGATATVDPSAGDVVEAIAGPVGLVPGG 253 (370)
T ss_dssp HTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHH----HTCSEEECTTSSCHHHHHHSTTSSSTTC
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----cCCCEEECCCCcCHHHHHHhhhhccCCC
Confidence 3456789999999976 7777777776 88789999999 66666654 3443111111112111 0 11247
Q ss_pred ccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 145 VDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 145 ~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
+|+|+-.. +. ...+....++|+++|.++..
T Consensus 254 ~Dvvid~~-G~--------~~~~~~~~~~l~~~G~vv~~ 283 (370)
T 4ej6_A 254 VDVVIECA-GV--------AETVKQSTRLAKAGGTVVIL 283 (370)
T ss_dssp EEEEEECS-CC--------HHHHHHHHHHEEEEEEEEEC
T ss_pred CCEEEECC-CC--------HHHHHHHHHHhccCCEEEEE
Confidence 99998521 11 23466667889999998854
|
| >3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A* | Back alignment and structure |
|---|
Probab=94.86 E-value=0.2 Score=44.91 Aligned_cols=101 Identities=13% Similarity=0.139 Sum_probs=67.0
Q ss_pred CEEEEECCcccHHHHHHHHc--------CCCeEEEEec-----h-H-------------------HHHHHHHHH------
Q 016351 80 KTVLDVGTGSGILAIWSAQA--------GARKVYAVEA-----T-K-------------------MSDHARTLV------ 120 (391)
Q Consensus 80 ~~VLDlGcGtG~l~~~~a~~--------g~~~V~avD~-----s-~-------------------~~~~a~~~~------ 120 (391)
..|+|+|+-.|..++.+++. ..++|+++|. . . ..+..++.+
T Consensus 71 G~ivE~GV~rG~S~~~~a~~~~~l~~~~~~r~v~~fDTFeG~P~~~~~D~~~~~~~~G~~~~~~~~~~~l~~~l~~~~~~ 150 (257)
T 3tos_A 71 GVIMEFGVRFGRHLGTFAALRGVYEPYNPLRRIVGFDTFTGFPDVNDVDRVGPTAYQGRFAVPGGYPAYLKEVLDAHECS 150 (257)
T ss_dssp SEEEEECCTTCHHHHHHHHHHHHHCTTCTTCCEEEEECSSCCCSCCGGGTTSTTCSTTTTCCCTTHHHHHHHHHHHHHTT
T ss_pred CeEEEEecccCHHHHHHHHHHHHhcccCCCCEEEEEECCCCCCCCccccccccccccCcccccchhHHHHHHHHHHHhhh
Confidence 47999999999877776542 2368999992 1 0 011122222
Q ss_pred HHcCC-CCcEEEEEcccccCC------CC-CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcccc
Q 016351 121 KANNL-QDVVEVIEGSVEDIV------LP-EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 121 ~~~~~-~~~v~~i~~d~~~~~------~~-~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~~ 185 (391)
+..+. .++|+++.|++.+.- .+ .++|+|..+. +. .+ .....++.+...|+|||++++...
T Consensus 151 ~~~g~~~~~i~li~G~~~dTL~~~l~~~~~~~~dlv~ID~-D~---Y~-~t~~~le~~~p~l~~GGvIv~DD~ 218 (257)
T 3tos_A 151 DFFGHVTQRSVLVEGDVRETVPRYLAENPQTVIALAYFDL-DL---YE-PTKAVLEAIRPYLTKGSIVAFDEL 218 (257)
T ss_dssp STTTTSCCSEEEEESCHHHHHHHHHHHCTTCCEEEEEECC-CC---HH-HHHHHHHHHGGGEEEEEEEEESST
T ss_pred hhcCCCCCcEEEEEecHHHHHHHHHHhCCCCceEEEEEcC-cc---cc-hHHHHHHHHHHHhCCCcEEEEcCC
Confidence 12344 477999999997741 23 4799999865 21 22 234567888899999999998875
|
| >3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=94.84 E-value=0.13 Score=48.12 Aligned_cols=89 Identities=21% Similarity=0.180 Sum_probs=59.9
Q ss_pred CCCCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEc
Q 016351 75 HHFQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISE 151 (391)
Q Consensus 75 ~~~~~~~VLDlGcGt-G~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~~D~Ivse 151 (391)
...++.+||-+|+|. |.++..+|++ |+ +|++++.+ +.++.+++ .|.. .++ .+...+. +.+|+|+-.
T Consensus 173 ~~~~g~~VlV~GaG~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~----lGa~---~v~-~~~~~~~--~~~D~vid~ 241 (348)
T 3two_A 173 KVTKGTKVGVAGFGGLGSMAVKYAVAMGA-EVSVFARNEHKKQDALS----MGVK---HFY-TDPKQCK--EELDFIIST 241 (348)
T ss_dssp TCCTTCEEEEESCSHHHHHHHHHHHHTTC-EEEEECSSSTTHHHHHH----TTCS---EEE-SSGGGCC--SCEEEEEEC
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHh----cCCC---eec-CCHHHHh--cCCCEEEEC
Confidence 456789999999986 7788777776 77 89999998 66666543 4543 222 4433332 479999852
Q ss_pred cccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 152 WMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 152 ~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
. + ... .+....+.|+++|.++..
T Consensus 242 ~-g----~~~----~~~~~~~~l~~~G~iv~~ 264 (348)
T 3two_A 242 I-P----THY----DLKDYLKLLTYNGDLALV 264 (348)
T ss_dssp C-C----SCC----CHHHHHTTEEEEEEEEEC
T ss_pred C-C----cHH----HHHHHHHHHhcCCEEEEE
Confidence 1 1 111 245566889999998854
|
| >1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A | Back alignment and structure |
|---|
Probab=94.79 E-value=0.048 Score=51.36 Aligned_cols=93 Identities=24% Similarity=0.259 Sum_probs=59.3
Q ss_pred CCCCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcc---ccc----CC--CC
Q 016351 75 HHFQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGS---VED----IV--LP 142 (391)
Q Consensus 75 ~~~~~~~VLDlGcGt-G~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d---~~~----~~--~~ 142 (391)
...++.+||.+|+|. |.++..+|++ |+++|+++|.+ ..++.++ ..|.. .++..+ ..+ +. ..
T Consensus 168 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~----~lGa~---~vi~~~~~~~~~~~~~i~~~~~ 240 (356)
T 1pl8_A 168 GVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAK----EIGAD---LVLQISKESPQEIARKVEGQLG 240 (356)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHH----HTTCS---EEEECSSCCHHHHHHHHHHHHT
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH----HhCCC---EEEcCcccccchHHHHHHHHhC
Confidence 456789999999986 7888888875 77689999998 6566554 34543 223222 111 10 01
Q ss_pred CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 143 EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 143 ~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
+.+|+|+-.. + . ...+....++|+++|.++..
T Consensus 241 ~g~D~vid~~-g----~----~~~~~~~~~~l~~~G~iv~~ 272 (356)
T 1pl8_A 241 CKPEVTIECT-G----A----EASIQAGIYATRSGGTLVLV 272 (356)
T ss_dssp SCCSEEEECS-C----C----HHHHHHHHHHSCTTCEEEEC
T ss_pred CCCCEEEECC-C----C----hHHHHHHHHHhcCCCEEEEE
Confidence 4699998521 1 1 12355566789999998754
|
| >3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=94.74 E-value=0.08 Score=49.34 Aligned_cols=67 Identities=12% Similarity=0.059 Sum_probs=50.9
Q ss_pred CCEEEEECCcccHHHHHHHHcCC--CeE-EEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC----CcccEEEE
Q 016351 79 GKTVLDVGTGSGILAIWSAQAGA--RKV-YAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP----EKVDVIIS 150 (391)
Q Consensus 79 ~~~VLDlGcGtG~l~~~~a~~g~--~~V-~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~----~~~D~Ivs 150 (391)
.-+++|+.||.|.+++.+.++|. ..| .++|++ ..++..+.+... .++++|+.++... ..+|+++.
T Consensus 10 ~~~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~~a~~ty~~N~~~-------~~~~~DI~~~~~~~i~~~~~Dil~g 82 (327)
T 3qv2_A 10 QVNVIEFFSGIGGLRSSYERSSININATFIPFDINEIANKIYSKNFKE-------EVQVKNLDSISIKQIESLNCNTWFM 82 (327)
T ss_dssp CEEEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCHHHHHHHHHHHCC-------CCBCCCTTTCCHHHHHHTCCCEEEE
T ss_pred CCEEEEECCChhHHHHHHHHcCCCceEEEEEEECCHHHHHHHHHHCCC-------CcccCChhhcCHHHhccCCCCEEEe
Confidence 35899999999999999999984 667 899999 666666666531 1567888887532 26899997
Q ss_pred cc
Q 016351 151 EW 152 (391)
Q Consensus 151 e~ 152 (391)
.+
T Consensus 83 gp 84 (327)
T 3qv2_A 83 SP 84 (327)
T ss_dssp CC
T ss_pred cC
Confidence 54
|
| >3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=94.57 E-value=0.12 Score=47.69 Aligned_cols=90 Identities=18% Similarity=0.121 Sum_probs=58.6
Q ss_pred hcCCCCCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEE
Q 016351 72 QNKHHFQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVI 148 (391)
Q Consensus 72 ~~~~~~~~~~VLDlGcGt-G~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~~D~I 148 (391)
......++.+||-+|+|. |.++..+|++ |+ +|++++ + +.++.+++ .|.. .++ .|..++ .+.+|+|
T Consensus 136 ~~~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga-~Vi~~~-~~~~~~~~~~----lGa~---~v~-~d~~~v--~~g~Dvv 203 (315)
T 3goh_A 136 EKIPLTKQREVLIVGFGAVNNLLTQMLNNAGY-VVDLVS-ASLSQALAAK----RGVR---HLY-REPSQV--TQKYFAI 203 (315)
T ss_dssp TTSCCCSCCEEEEECCSHHHHHHHHHHHHHTC-EEEEEC-SSCCHHHHHH----HTEE---EEE-SSGGGC--CSCEEEE
T ss_pred hhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEE-ChhhHHHHHH----cCCC---EEE-cCHHHh--CCCccEE
Confidence 445566789999999975 7888888876 88 899999 7 66666654 3432 223 243333 5789999
Q ss_pred EEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 149 ISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 149 vse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
+-. .+. + . +....++|+++|.++..
T Consensus 204 ~d~-~g~----~----~-~~~~~~~l~~~G~~v~~ 228 (315)
T 3goh_A 204 FDA-VNS----Q----N-AAALVPSLKANGHIICI 228 (315)
T ss_dssp ECC-----------------TTGGGEEEEEEEEEE
T ss_pred EEC-CCc----h----h-HHHHHHHhcCCCEEEEE
Confidence 841 111 1 1 24556889999998754
|
| >2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.53 E-value=0.09 Score=48.23 Aligned_cols=69 Identities=16% Similarity=0.076 Sum_probs=52.2
Q ss_pred CCCEEEEECCcccHHHHHHHHcCCCe--EEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-----CcccEEE
Q 016351 78 QGKTVLDVGTGSGILAIWSAQAGARK--VYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-----EKVDVII 149 (391)
Q Consensus 78 ~~~~VLDlGcGtG~l~~~~a~~g~~~--V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~-----~~~D~Iv 149 (391)
...+|+|+-||.|.+++.+.++|... |.++|++ ..++..+.+. ++ ..++.+|+.++... ..+|+|+
T Consensus 15 ~~~~vidLFaG~GG~~~g~~~aG~~~~~v~a~E~d~~a~~ty~~N~-----~~-~~~~~~DI~~i~~~~i~~~~~~Dll~ 88 (295)
T 2qrv_A 15 KPIRVLSLFDGIATGLLVLKDLGIQVDRYIASEVCEDSITVGMVRH-----QG-KIMYVGDVRSVTQKHIQEWGPFDLVI 88 (295)
T ss_dssp CCEEEEEETCTTTHHHHHHHHTTBCEEEEEEECCCHHHHHHHHHHT-----TT-CEEEECCGGGCCHHHHHHTCCCSEEE
T ss_pred CCCEEEEeCcCccHHHHHHHHCCCccceEEEEECCHHHHHHHHHhC-----CC-CceeCCChHHccHHHhcccCCcCEEE
Confidence 44689999999999999999999875 6999999 5555444443 12 46788999987421 3699999
Q ss_pred Ecc
Q 016351 150 SEW 152 (391)
Q Consensus 150 se~ 152 (391)
..+
T Consensus 89 ggp 91 (295)
T 2qrv_A 89 GGS 91 (295)
T ss_dssp ECC
T ss_pred ecC
Confidence 744
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=94.46 E-value=0.0085 Score=55.94 Aligned_cols=61 Identities=18% Similarity=0.151 Sum_probs=48.9
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC
Q 016351 77 FQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV 140 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~ 140 (391)
.++..|||--||+|..+..+.+.|. +.+|+|++ ..++.++++++..+.. ...+..|+.++.
T Consensus 251 ~~~~~VlDpF~GsGtt~~aa~~~gr-~~ig~e~~~~~~~~~~~r~~~~~~~--~~~~~~~~~~i~ 312 (323)
T 1boo_A 251 EPDDLVVDIFGGSNTTGLVAERESR-KWISFEMKPEYVAASAFRFLDNNIS--EEKITDIYNRIL 312 (323)
T ss_dssp CTTCEEEETTCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHGGGSCSCSC--HHHHHHHHHHHH
T ss_pred CCCCEEEECCCCCCHHHHHHHHcCC-CEEEEeCCHHHHHHHHHHHHhcccc--hHHHHHHHHHHH
Confidence 5789999999999999999999886 79999999 8889998888766543 445555555543
|
| >1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=94.39 E-value=0.081 Score=50.59 Aligned_cols=101 Identities=22% Similarity=0.237 Sum_probs=62.0
Q ss_pred CCCCCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEccccc-----C---CCC
Q 016351 74 KHHFQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVED-----I---VLP 142 (391)
Q Consensus 74 ~~~~~~~~VLDlGcGt-G~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~-----~---~~~ 142 (391)
....++.+||.+|+|. |.++..+|++ |+++|+++|.+ ..++.+++ .|. +++...-.+ + ...
T Consensus 181 ~~~~~g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~~~a~~----lGa----~~i~~~~~~~~~~~v~~~t~g 252 (398)
T 1kol_A 181 AGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKA----QGF----EIADLSLDTPLHEQIAALLGE 252 (398)
T ss_dssp TTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH----TTC----EEEETTSSSCHHHHHHHHHSS
T ss_pred cCCCCCCEEEEECCcHHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHH----cCC----cEEccCCcchHHHHHHHHhCC
Confidence 3456789999999976 8888888886 88789999998 66666643 443 233221111 1 112
Q ss_pred CcccEEEEccccccc-------cCcchHHHHHHHHhccccCCeEEEcc
Q 016351 143 EKVDVIISEWMGYFL-------LRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 143 ~~~D~Ivse~~~~~~-------~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
..+|+|+-.. +.-. .+.......+....++|+++|.++..
T Consensus 253 ~g~Dvvid~~-G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~ 299 (398)
T 1kol_A 253 PEVDCAVDAV-GFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIP 299 (398)
T ss_dssp SCEEEEEECC-CTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEEC
T ss_pred CCCCEEEECC-CCcccccccccccccchHHHHHHHHHHHhcCCEEEEe
Confidence 4699998522 2110 00011223466677889999998754
|
| >3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=94.39 E-value=0.019 Score=54.73 Aligned_cols=98 Identities=19% Similarity=0.221 Sum_probs=61.8
Q ss_pred HHhcCCCCCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcc--cccC-----
Q 016351 70 IFQNKHHFQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGS--VEDI----- 139 (391)
Q Consensus 70 i~~~~~~~~~~~VLDlGcGt-G~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d--~~~~----- 139 (391)
+.......++.+||-+|+|. |.++..+|++ |+++|+++|.+ ..++.|+ +.|.. .++... -.++
T Consensus 185 l~~~~~~~~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~----~lGa~---~vi~~~~~~~~~~~~i~ 257 (378)
T 3uko_A 185 VWNTAKVEPGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAK----KFGVN---EFVNPKDHDKPIQEVIV 257 (378)
T ss_dssp HHTTTCCCTTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHHHHH----TTTCC---EEECGGGCSSCHHHHHH
T ss_pred HHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHH----HcCCc---EEEccccCchhHHHHHH
Confidence 33444556788999999975 7888888876 88789999988 6666554 34543 222211 0111
Q ss_pred -CCCCcccEEEEccccccccCcchHHHHHHHHhccccCC-eEEEcc
Q 016351 140 -VLPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPT-GVMYPS 183 (391)
Q Consensus 140 -~~~~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~g-G~ii~~ 183 (391)
...+.+|+|+--. + -...+....+.|+++ |+++..
T Consensus 258 ~~~~gg~D~vid~~-g--------~~~~~~~~~~~l~~g~G~iv~~ 294 (378)
T 3uko_A 258 DLTDGGVDYSFECI-G--------NVSVMRAALECCHKGWGTSVIV 294 (378)
T ss_dssp HHTTSCBSEEEECS-C--------CHHHHHHHHHTBCTTTCEEEEC
T ss_pred HhcCCCCCEEEECC-C--------CHHHHHHHHHHhhccCCEEEEE
Confidence 0124799998521 1 123466677889996 988754
|
| >3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* | Back alignment and structure |
|---|
Probab=94.35 E-value=0.055 Score=50.55 Aligned_cols=93 Identities=17% Similarity=0.128 Sum_probs=60.2
Q ss_pred CCCCCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC-----CCCcc
Q 016351 74 KHHFQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV-----LPEKV 145 (391)
Q Consensus 74 ~~~~~~~~VLDlGcGt-G~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~-----~~~~~ 145 (391)
....++.+||-+|+|. |.++..++++ |+ +|+++|.+ +.++.+++ .|.. .++..+-.++. ..+.+
T Consensus 162 ~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~----lGa~---~~i~~~~~~~~~~~~~~~g~~ 233 (340)
T 3s2e_A 162 TDTRPGQWVVISGIGGLGHVAVQYARAMGL-RVAAVDIDDAKLNLARR----LGAE---VAVNARDTDPAAWLQKEIGGA 233 (340)
T ss_dssp TTCCTTSEEEEECCSTTHHHHHHHHHHTTC-EEEEEESCHHHHHHHHH----TTCS---EEEETTTSCHHHHHHHHHSSE
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHH----cCCC---EEEeCCCcCHHHHHHHhCCCC
Confidence 3456789999999986 8888888886 77 89999998 66666543 4533 22222111110 01368
Q ss_pred cEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 146 DVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 146 D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
|+|+-.. + -...+....+.|+++|.++..
T Consensus 234 d~vid~~-g--------~~~~~~~~~~~l~~~G~iv~~ 262 (340)
T 3s2e_A 234 HGVLVTA-V--------SPKAFSQAIGMVRRGGTIALN 262 (340)
T ss_dssp EEEEESS-C--------CHHHHHHHHHHEEEEEEEEEC
T ss_pred CEEEEeC-C--------CHHHHHHHHHHhccCCEEEEe
Confidence 8887532 1 123466677889999998754
|
| >1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=94.09 E-value=0.11 Score=49.21 Aligned_cols=90 Identities=26% Similarity=0.278 Sum_probs=57.8
Q ss_pred CCCCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcc----cccCCCCCcccE
Q 016351 75 HHFQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGS----VEDIVLPEKVDV 147 (391)
Q Consensus 75 ~~~~~~~VLDlGcGt-G~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d----~~~~~~~~~~D~ 147 (391)
...++.+||.+|+|. |.++..+|+. |+ +|++++.+ +.++.+++ .|.. .++... ...+. +.+|+
T Consensus 191 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga-~Vi~~~~~~~~~~~a~~----lGa~---~vi~~~~~~~~~~~~--~g~Dv 260 (369)
T 1uuf_A 191 QAGPGKKVGVVGIGGLGHMGIKLAHAMGA-HVVAFTTSEAKREAAKA----LGAD---EVVNSRNADEMAAHL--KSFDF 260 (369)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHH----HTCS---EEEETTCHHHHHTTT--TCEEE
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH----cCCc---EEeccccHHHHHHhh--cCCCE
Confidence 456789999999986 7777777775 77 69999988 66666654 3432 223221 11222 57999
Q ss_pred EEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 148 IISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 148 Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
|+.-. +. .. .+....+.|+++|.++..
T Consensus 261 vid~~-g~----~~----~~~~~~~~l~~~G~iv~~ 287 (369)
T 1uuf_A 261 ILNTV-AA----PH----NLDDFTTLLKRDGTMTLV 287 (369)
T ss_dssp EEECC-SS----CC----CHHHHHTTEEEEEEEEEC
T ss_pred EEECC-CC----HH----HHHHHHHHhccCCEEEEe
Confidence 98521 11 11 244556789999998754
|
| >4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda} | Back alignment and structure |
|---|
Probab=94.05 E-value=0.048 Score=50.99 Aligned_cols=67 Identities=15% Similarity=0.201 Sum_probs=50.5
Q ss_pred CEEEEECCcccHHHHHHHHcCC--CeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC----CcccEEEEcc
Q 016351 80 KTVLDVGTGSGILAIWSAQAGA--RKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP----EKVDVIISEW 152 (391)
Q Consensus 80 ~~VLDlGcGtG~l~~~~a~~g~--~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~----~~~D~Ivse~ 152 (391)
.+++|+-||.|.+++.+.++|. ..|.++|++ ..++..+.+.. + ..++.+|+.++... ..+|+++..+
T Consensus 4 ~~~idLFaG~GG~~~G~~~aG~~~~~v~a~e~d~~a~~ty~~N~~-----~-~~~~~~DI~~~~~~~~~~~~~D~l~ggp 77 (333)
T 4h0n_A 4 HKILELYSGIGGMHCAWKESGLDGEIVAAVDINTVANSVYKHNFP-----E-TNLLNRNIQQLTPQVIKKWNVDTILMSP 77 (333)
T ss_dssp EEEEEETCTTTHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCT-----T-SCEECCCGGGCCHHHHHHTTCCEEEECC
T ss_pred CEEEEECcCccHHHHHHHHcCCCceEEEEEeCCHHHHHHHHHhCC-----C-CceeccccccCCHHHhccCCCCEEEecC
Confidence 4799999999999999999986 568999999 55555554432 1 45778899887532 3689999744
|
| >1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* | Back alignment and structure |
|---|
Probab=93.90 E-value=0.26 Score=46.58 Aligned_cols=96 Identities=20% Similarity=0.144 Sum_probs=60.4
Q ss_pred hcCCCCCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcc-----ccc-C-C-
Q 016351 72 QNKHHFQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGS-----VED-I-V- 140 (391)
Q Consensus 72 ~~~~~~~~~~VLDlGcGt-G~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d-----~~~-~-~- 140 (391)
+.....++.+||-+|+|. |.++..+|++ |+++|+++|.+ +.++.++ ..|.. .++..+ +.+ + .
T Consensus 185 ~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~----~lGa~---~vi~~~~~~~~~~~~i~~~ 257 (373)
T 1p0f_A 185 NTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAI----ELGAT---ECLNPKDYDKPIYEVICEK 257 (373)
T ss_dssp TTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHH----HTTCS---EEECGGGCSSCHHHHHHHH
T ss_pred hccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHH----HcCCc---EEEecccccchHHHHHHHH
Confidence 334456789999999876 7777777775 88789999988 6666654 34543 222211 111 0 0
Q ss_pred CCCcccEEEEccccccccCcchHHHHHHHHhccccCC-eEEEcc
Q 016351 141 LPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPT-GVMYPS 183 (391)
Q Consensus 141 ~~~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~g-G~ii~~ 183 (391)
..+.+|+|+--. +. ...+....++|+++ |.++..
T Consensus 258 t~gg~Dvvid~~-g~--------~~~~~~~~~~l~~~~G~iv~~ 292 (373)
T 1p0f_A 258 TNGGVDYAVECA-GR--------IETMMNALQSTYCGSGVTVVL 292 (373)
T ss_dssp TTSCBSEEEECS-CC--------HHHHHHHHHTBCTTTCEEEEC
T ss_pred hCCCCCEEEECC-CC--------HHHHHHHHHHHhcCCCEEEEE
Confidence 114799998521 11 23456667889999 988743
|
| >3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=93.80 E-value=0.031 Score=52.27 Aligned_cols=94 Identities=18% Similarity=0.103 Sum_probs=57.9
Q ss_pred hcCCCCCCCEEEEECCc--ccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEccccc-------CC
Q 016351 72 QNKHHFQGKTVLDVGTG--SGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVED-------IV 140 (391)
Q Consensus 72 ~~~~~~~~~~VLDlGcG--tG~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~-------~~ 140 (391)
+.....++++||-+|+| .|.++..+++. |+ +|++++.+ +.++.+++ .|.. .++...-.+ +.
T Consensus 138 ~~~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~----lga~---~~~~~~~~~~~~~~~~~~ 209 (340)
T 3gms_A 138 ETLNLQRNDVLLVNACGSAIGHLFAQLSQILNF-RLIAVTRNNKHTEELLR----LGAA---YVIDTSTAPLYETVMELT 209 (340)
T ss_dssp TTSCCCTTCEEEESSTTSHHHHHHHHHHHHHTC-EEEEEESSSTTHHHHHH----HTCS---EEEETTTSCHHHHHHHHT
T ss_pred HhcccCCCCEEEEeCCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHh----CCCc---EEEeCCcccHHHHHHHHh
Confidence 44456678999999997 46777777765 88 89999998 76666665 3332 222211111 11
Q ss_pred CCCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 141 LPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 141 ~~~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
....+|+|+... +. ...... .+.|+++|.++..
T Consensus 210 ~~~g~Dvvid~~-g~--------~~~~~~-~~~l~~~G~iv~~ 242 (340)
T 3gms_A 210 NGIGADAAIDSI-GG--------PDGNEL-AFSLRPNGHFLTI 242 (340)
T ss_dssp TTSCEEEEEESS-CH--------HHHHHH-HHTEEEEEEEEEC
T ss_pred CCCCCcEEEECC-CC--------hhHHHH-HHHhcCCCEEEEE
Confidence 124799998622 11 112222 3689999998854
|
| >3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} | Back alignment and structure |
|---|
Probab=93.70 E-value=0.032 Score=52.75 Aligned_cols=96 Identities=22% Similarity=0.230 Sum_probs=60.1
Q ss_pred HHhcCCCCCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccC-------
Q 016351 70 IFQNKHHFQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDI------- 139 (391)
Q Consensus 70 i~~~~~~~~~~~VLDlGcGt-G~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~------- 139 (391)
+.+.....++.+||-+|+|. |.++..+|++ |+ +|++++.+ ..++.+++ .|.. .++..+..++
T Consensus 181 l~~~~~~~~g~~VlV~G~G~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~----lGa~---~vi~~~~~~~~~~v~~~ 252 (363)
T 3uog_A 181 LVEKGHLRAGDRVVVQGTGGVALFGLQIAKATGA-EVIVTSSSREKLDRAFA----LGAD---HGINRLEEDWVERVYAL 252 (363)
T ss_dssp HTTTTCCCTTCEEEEESSBHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHH----HTCS---EEEETTTSCHHHHHHHH
T ss_pred HHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEecCchhHHHHHH----cCCC---EEEcCCcccHHHHHHHH
Confidence 33344556789999999886 7777777776 77 89999998 66666654 3442 2232221111
Q ss_pred CCCCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 140 VLPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 140 ~~~~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
.....+|+|+-.. + . . .+....+.|+++|.++..
T Consensus 253 ~~g~g~D~vid~~-g----~-~----~~~~~~~~l~~~G~iv~~ 286 (363)
T 3uog_A 253 TGDRGADHILEIA-G----G-A----GLGQSLKAVAPDGRISVI 286 (363)
T ss_dssp HTTCCEEEEEEET-T----S-S----CHHHHHHHEEEEEEEEEE
T ss_pred hCCCCceEEEECC-C----h-H----HHHHHHHHhhcCCEEEEE
Confidence 1124799998522 2 1 1 234455679999998754
|
| >2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* | Back alignment and structure |
|---|
Probab=93.68 E-value=0.035 Score=52.16 Aligned_cols=94 Identities=29% Similarity=0.275 Sum_probs=58.4
Q ss_pred cCCCCCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEccccc-------CCCC
Q 016351 73 NKHHFQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVED-------IVLP 142 (391)
Q Consensus 73 ~~~~~~~~~VLDlGcGt-G~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~-------~~~~ 142 (391)
.... ++.+||-+|+|. |.++..+++. |+++|++++.+ +.++.+++ .|.. .++..+-.+ +...
T Consensus 163 ~~~~-~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~----~Ga~---~~~~~~~~~~~~~v~~~~~g 234 (348)
T 2d8a_A 163 AGPI-SGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKK----VGAD---YVINPFEEDVVKEVMDITDG 234 (348)
T ss_dssp TSCC-TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHH----HTCS---EEECTTTSCHHHHHHHHTTT
T ss_pred hcCC-CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----hCCC---EEECCCCcCHHHHHHHHcCC
Confidence 3445 888999999965 7777777775 77679999998 66666653 3332 222221111 1112
Q ss_pred CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 143 EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 143 ~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
..+|+|+... +. ...+....+.|+++|.++..
T Consensus 235 ~g~D~vid~~-g~--------~~~~~~~~~~l~~~G~iv~~ 266 (348)
T 2d8a_A 235 NGVDVFLEFS-GA--------PKALEQGLQAVTPAGRVSLL 266 (348)
T ss_dssp SCEEEEEECS-CC--------HHHHHHHHHHEEEEEEEEEC
T ss_pred CCCCEEEECC-CC--------HHHHHHHHHHHhcCCEEEEE
Confidence 4699998522 11 23456666789999988754
|
| >4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=93.62 E-value=0.063 Score=50.76 Aligned_cols=89 Identities=18% Similarity=0.209 Sum_probs=58.0
Q ss_pred CCCEEEEEC-Ccc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEc--c----cccCCCCCcccE
Q 016351 78 QGKTVLDVG-TGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEG--S----VEDIVLPEKVDV 147 (391)
Q Consensus 78 ~~~~VLDlG-cGt-G~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~--d----~~~~~~~~~~D~ 147 (391)
++.+||-+| +|. |.++..+|++ +..+|++++.+ ..++.+++ .|.. .++.. + +.++ ..+.+|+
T Consensus 171 ~g~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~~~~~~~~~~----lGad---~vi~~~~~~~~~v~~~-~~~g~Dv 242 (363)
T 4dvj_A 171 AAPAILIVGGAGGVGSIAVQIARQRTDLTVIATASRPETQEWVKS----LGAH---HVIDHSKPLAAEVAAL-GLGAPAF 242 (363)
T ss_dssp SEEEEEEESTTSHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHH----TTCS---EEECTTSCHHHHHHTT-CSCCEEE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHH----cCCC---EEEeCCCCHHHHHHHh-cCCCceE
Confidence 678999998 655 8888889986 55589999998 66666643 4532 22221 1 1112 1257998
Q ss_pred EEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 148 IISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 148 Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
|+-.. + -...+....++|+++|.++..
T Consensus 243 vid~~-g--------~~~~~~~~~~~l~~~G~iv~~ 269 (363)
T 4dvj_A 243 VFSTT-H--------TDKHAAEIADLIAPQGRFCLI 269 (363)
T ss_dssp EEECS-C--------HHHHHHHHHHHSCTTCEEEEC
T ss_pred EEECC-C--------chhhHHHHHHHhcCCCEEEEE
Confidence 88521 1 123466677889999998854
|
| >1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=93.62 E-value=0.088 Score=49.87 Aligned_cols=95 Identities=20% Similarity=0.214 Sum_probs=59.6
Q ss_pred cCCCCCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEccc--ccCC------C
Q 016351 73 NKHHFQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSV--EDIV------L 141 (391)
Q Consensus 73 ~~~~~~~~~VLDlGcGt-G~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~--~~~~------~ 141 (391)
.....++.+||-+|+|. |.++..+|++ |+.+|+++|.+ ..++.++ ..|.. .++...- .++. .
T Consensus 187 ~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~----~lGa~---~vi~~~~~~~~~~~~~~~~~ 259 (374)
T 1cdo_A 187 TAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAK----VFGAT---DFVNPNDHSEPISQVLSKMT 259 (374)
T ss_dssp TTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHH----HTTCC---EEECGGGCSSCHHHHHHHHH
T ss_pred ccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHH----HhCCc---eEEeccccchhHHHHHHHHh
Confidence 34456789999999876 7777777775 77689999988 6666654 34542 2222110 0110 0
Q ss_pred CCcccEEEEccccccccCcchHHHHHHHHhccccCC-eEEEcc
Q 016351 142 PEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPT-GVMYPS 183 (391)
Q Consensus 142 ~~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~g-G~ii~~ 183 (391)
.+.+|+|+-.. +. ...+....++|+++ |.++..
T Consensus 260 ~~g~D~vid~~-g~--------~~~~~~~~~~l~~~~G~iv~~ 293 (374)
T 1cdo_A 260 NGGVDFSLECV-GN--------VGVMRNALESCLKGWGVSVLV 293 (374)
T ss_dssp TSCBSEEEECS-CC--------HHHHHHHHHTBCTTTCEEEEC
T ss_pred CCCCCEEEECC-CC--------HHHHHHHHHHhhcCCcEEEEE
Confidence 13699998521 11 23456667889999 988744
|
| >1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* | Back alignment and structure |
|---|
Probab=93.58 E-value=0.089 Score=49.87 Aligned_cols=96 Identities=21% Similarity=0.222 Sum_probs=60.0
Q ss_pred hcCCCCCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcc-----ccc-CC--
Q 016351 72 QNKHHFQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGS-----VED-IV-- 140 (391)
Q Consensus 72 ~~~~~~~~~~VLDlGcGt-G~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d-----~~~-~~-- 140 (391)
......++.+||-+|+|. |.++..+|++ |+++|+++|.+ +.++.++ ..|.. .++..+ +.+ +.
T Consensus 189 ~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~----~lGa~---~vi~~~~~~~~~~~~v~~~ 261 (376)
T 1e3i_A 189 NTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAK----ALGAT---DCLNPRELDKPVQDVITEL 261 (376)
T ss_dssp TTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHH----HTTCS---EEECGGGCSSCHHHHHHHH
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHH----HhCCc---EEEccccccchHHHHHHHH
Confidence 334456789999999875 7777777775 77689999988 6666554 34542 222211 111 00
Q ss_pred CCCcccEEEEccccccccCcchHHHHHHHHhccccCC-eEEEcc
Q 016351 141 LPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPT-GVMYPS 183 (391)
Q Consensus 141 ~~~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~g-G~ii~~ 183 (391)
..+.+|+|+-.. +. ...+....++|+++ |.++..
T Consensus 262 ~~~g~Dvvid~~-G~--------~~~~~~~~~~l~~~~G~iv~~ 296 (376)
T 1e3i_A 262 TAGGVDYSLDCA-GT--------AQTLKAAVDCTVLGWGSCTVV 296 (376)
T ss_dssp HTSCBSEEEESS-CC--------HHHHHHHHHTBCTTTCEEEEC
T ss_pred hCCCccEEEECC-CC--------HHHHHHHHHHhhcCCCEEEEE
Confidence 013699998521 11 23456667889999 998754
|
| >2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A* | Back alignment and structure |
|---|
Probab=93.45 E-value=0.058 Score=51.12 Aligned_cols=96 Identities=19% Similarity=0.204 Sum_probs=60.2
Q ss_pred hcCCCCCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcc-----ccc-C-C-
Q 016351 72 QNKHHFQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGS-----VED-I-V- 140 (391)
Q Consensus 72 ~~~~~~~~~~VLDlGcGt-G~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d-----~~~-~-~- 140 (391)
......++.+||-+|+|. |.++..+|++ |+++|+++|.+ ..++.+++ .|.. .++... +.+ + .
T Consensus 184 ~~~~~~~g~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~~----lGa~---~vi~~~~~~~~~~~~v~~~ 256 (373)
T 2fzw_A 184 NTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKE----FGAT---ECINPQDFSKPIQEVLIEM 256 (373)
T ss_dssp TTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHH----HTCS---EEECGGGCSSCHHHHHHHH
T ss_pred hhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----cCCc---eEeccccccccHHHHHHHH
Confidence 334456789999999876 7777777775 88689999988 66666653 3432 222211 111 0 0
Q ss_pred CCCcccEEEEccccccccCcchHHHHHHHHhccccCC-eEEEcc
Q 016351 141 LPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPT-GVMYPS 183 (391)
Q Consensus 141 ~~~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~g-G~ii~~ 183 (391)
..+.+|+|+-.. +. ...+....++|+++ |.++..
T Consensus 257 ~~~g~D~vid~~-g~--------~~~~~~~~~~l~~~~G~iv~~ 291 (373)
T 2fzw_A 257 TDGGVDYSFECI-GN--------VKVMRAALEACHKGWGVSVVV 291 (373)
T ss_dssp TTSCBSEEEECS-CC--------HHHHHHHHHTBCTTTCEEEEC
T ss_pred hCCCCCEEEECC-Cc--------HHHHHHHHHhhccCCcEEEEE
Confidence 113799998521 11 23456667889999 998744
|
| >1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=93.36 E-value=0.089 Score=50.00 Aligned_cols=92 Identities=23% Similarity=0.347 Sum_probs=58.0
Q ss_pred CCCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcc---ccc-------CCCC
Q 016351 76 HFQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGS---VED-------IVLP 142 (391)
Q Consensus 76 ~~~~~~VLDlGcGt-G~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d---~~~-------~~~~ 142 (391)
..++.+||-+|+|. |.++..+|++ |+.+|++++.+ +.++.++ ..|.. .++..+ -.+ +...
T Consensus 193 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~----~lGa~---~vi~~~~~~~~~~~~~v~~~~~g 265 (380)
T 1vj0_A 193 SFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAE----EIGAD---LTLNRRETSVEERRKAIMDITHG 265 (380)
T ss_dssp CCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHH----HTTCS---EEEETTTSCHHHHHHHHHHHTTT
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHH----HcCCc---EEEeccccCcchHHHHHHHHhCC
Confidence 56789999999775 7777777776 75589999988 6666654 34542 233322 111 1112
Q ss_pred CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 143 EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 143 ~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
..+|+|+-.. + .. ..+....++|+++|.++..
T Consensus 266 ~g~Dvvid~~-g----~~----~~~~~~~~~l~~~G~iv~~ 297 (380)
T 1vj0_A 266 RGADFILEAT-G----DS----RALLEGSELLRRGGFYSVA 297 (380)
T ss_dssp SCEEEEEECS-S----CT----THHHHHHHHEEEEEEEEEC
T ss_pred CCCcEEEECC-C----CH----HHHHHHHHHHhcCCEEEEE
Confidence 3699998521 1 11 2345556789999998744
|
| >3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A* | Back alignment and structure |
|---|
Probab=93.17 E-value=0.11 Score=48.44 Aligned_cols=93 Identities=18% Similarity=0.197 Sum_probs=60.0
Q ss_pred CCCCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEccc--c----cCCCCCcc
Q 016351 75 HHFQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSV--E----DIVLPEKV 145 (391)
Q Consensus 75 ~~~~~~~VLDlGcGt-G~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~--~----~~~~~~~~ 145 (391)
...++.+||-+|+|. |.++..+|++ |..+|+++|.+ +.++.+++ .|.. .++..+- . ++.....+
T Consensus 168 ~~~~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~~~----lGa~---~~i~~~~~~~~~v~~~t~g~g~ 240 (345)
T 3jv7_A 168 LLGPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALARE----VGAD---AAVKSGAGAADAIRELTGGQGA 240 (345)
T ss_dssp GCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHH----TTCS---EEEECSTTHHHHHHHHHGGGCE
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH----cCCC---EEEcCCCcHHHHHHHHhCCCCC
Confidence 346789999999976 7888888876 56689999999 66666643 4543 2232211 1 11111379
Q ss_pred cEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 146 DVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 146 D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
|+|+-.. + . ...+....+.|+++|.++..
T Consensus 241 d~v~d~~-G----~----~~~~~~~~~~l~~~G~iv~~ 269 (345)
T 3jv7_A 241 TAVFDFV-G----A----QSTIDTAQQVVAVDGHISVV 269 (345)
T ss_dssp EEEEESS-C----C----HHHHHHHHHHEEEEEEEEEC
T ss_pred eEEEECC-C----C----HHHHHHHHHHHhcCCEEEEE
Confidence 9998521 1 1 23466677889999998854
|
| >1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A | Back alignment and structure |
|---|
Probab=93.11 E-value=0.12 Score=48.70 Aligned_cols=95 Identities=20% Similarity=0.205 Sum_probs=58.0
Q ss_pred CCCCCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccc-cC--CCCCcccE
Q 016351 74 KHHFQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVE-DI--VLPEKVDV 147 (391)
Q Consensus 74 ~~~~~~~~VLDlGcGt-G~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~-~~--~~~~~~D~ 147 (391)
....++.+||-+|+|. |.++..+|++ |+ +|++++.+ ..++.+++ .|.. .++..+-. ++ ...+.+|+
T Consensus 175 ~~~~~g~~VlV~GaG~vG~~~~qlak~~Ga-~Vi~~~~~~~~~~~~~~----lGa~---~v~~~~~~~~~~~~~~~~~D~ 246 (360)
T 1piw_A 175 NGCGPGKKVGIVGLGGIGSMGTLISKAMGA-ETYVISRSSRKREDAMK----MGAD---HYIATLEEGDWGEKYFDTFDL 246 (360)
T ss_dssp TTCSTTCEEEEECCSHHHHHHHHHHHHHTC-EEEEEESSSTTHHHHHH----HTCS---EEEEGGGTSCHHHHSCSCEEE
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHH----cCCC---EEEcCcCchHHHHHhhcCCCE
Confidence 3456789999999965 7777777775 88 69999988 66666654 3432 22322111 11 01157999
Q ss_pred EEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 148 IISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 148 Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
|+... +.. .. ..+....++|+++|.++..
T Consensus 247 vid~~-g~~--~~----~~~~~~~~~l~~~G~iv~~ 275 (360)
T 1piw_A 247 IVVCA-SSL--TD----IDFNIMPKAMKVGGRIVSI 275 (360)
T ss_dssp EEECC-SCS--TT----CCTTTGGGGEEEEEEEEEC
T ss_pred EEECC-CCC--cH----HHHHHHHHHhcCCCEEEEe
Confidence 98522 210 01 1234456789999998743
|
| >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 | Back alignment and structure |
|---|
Probab=92.98 E-value=0.21 Score=42.37 Aligned_cols=94 Identities=20% Similarity=0.232 Sum_probs=55.1
Q ss_pred hcCCCCCCCEEEEECC--cccHHHHHHHH-cCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccC-------C
Q 016351 72 QNKHHFQGKTVLDVGT--GSGILAIWSAQ-AGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDI-------V 140 (391)
Q Consensus 72 ~~~~~~~~~~VLDlGc--GtG~l~~~~a~-~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~-------~ 140 (391)
+.....++++||..|+ |.|.....+++ .|+ +|++++.+ +.++.++ ..+.. .++..+-.+. .
T Consensus 32 ~~~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~-~V~~~~~~~~~~~~~~----~~g~~---~~~d~~~~~~~~~~~~~~ 103 (198)
T 1pqw_A 32 EVGRLSPGERVLIHSATGGVGMAAVSIAKMIGA-RIYTTAGSDAKREMLS----RLGVE---YVGDSRSVDFADEILELT 103 (198)
T ss_dssp TTSCCCTTCEEEETTTTSHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHH----TTCCS---EEEETTCSTHHHHHHHHT
T ss_pred HHhCCCCCCEEEEeeCCChHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHH----HcCCC---EEeeCCcHHHHHHHHHHh
Confidence 3344567899999995 34555555444 487 79999998 6555443 23432 1221111110 1
Q ss_pred CCCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 141 LPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 141 ~~~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
....+|+++... + . ..+....+.|+++|+++..
T Consensus 104 ~~~~~D~vi~~~-g-----~----~~~~~~~~~l~~~G~~v~~ 136 (198)
T 1pqw_A 104 DGYGVDVVLNSL-A-----G----EAIQRGVQILAPGGRFIEL 136 (198)
T ss_dssp TTCCEEEEEECC-C-----T----HHHHHHHHTEEEEEEEEEC
T ss_pred CCCCCeEEEECC-c-----h----HHHHHHHHHhccCCEEEEE
Confidence 124699999632 2 1 2356667889999998754
|
| >2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A* | Back alignment and structure |
|---|
Probab=92.97 E-value=0.019 Score=53.89 Aligned_cols=92 Identities=23% Similarity=0.294 Sum_probs=57.4
Q ss_pred cCCCCCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcc---c----ccCCCC
Q 016351 73 NKHHFQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGS---V----EDIVLP 142 (391)
Q Consensus 73 ~~~~~~~~~VLDlGcGt-G~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d---~----~~~~~~ 142 (391)
.... ++.+||-+|+|. |.++..+|+. |+++|++++.+ +.++.+++. . + .++..+ + .++. .
T Consensus 160 ~~~~-~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~l-a-----~--~v~~~~~~~~~~~~~~~~-~ 229 (343)
T 2dq4_A 160 GSGV-SGKSVLITGAGPIGLMAAMVVRASGAGPILVSDPNPYRLAFARPY-A-----D--RLVNPLEEDLLEVVRRVT-G 229 (343)
T ss_dssp TTCC-TTSCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHGGGTTT-C-----S--EEECTTTSCHHHHHHHHH-S
T ss_pred hCCC-CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-H-----H--hccCcCccCHHHHHHHhc-C
Confidence 3445 889999999865 7777777775 77579999998 656555442 1 1 222211 1 1111 3
Q ss_pred CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 143 EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 143 ~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
..+|+|+... +. ...+....+.|+++|.++..
T Consensus 230 ~g~D~vid~~-g~--------~~~~~~~~~~l~~~G~iv~~ 261 (343)
T 2dq4_A 230 SGVEVLLEFS-GN--------EAAIHQGLMALIPGGEARIL 261 (343)
T ss_dssp SCEEEEEECS-CC--------HHHHHHHHHHEEEEEEEEEC
T ss_pred CCCCEEEECC-CC--------HHHHHHHHHHHhcCCEEEEE
Confidence 4699998522 11 12355666789999988754
|
| >1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=92.91 E-value=0.19 Score=47.05 Aligned_cols=92 Identities=20% Similarity=0.256 Sum_probs=57.7
Q ss_pred CCCCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEccc-ccC----C--C---
Q 016351 75 HHFQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSV-EDI----V--L--- 141 (391)
Q Consensus 75 ~~~~~~~VLDlGcGt-G~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~-~~~----~--~--- 141 (391)
...++.+||-+|+|. |.++..+|++ |+ +|+++|.+ +.++.++ ..|.. .++..+- .++ . .
T Consensus 165 ~~~~g~~VlV~GaG~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~----~lGa~---~~~~~~~~~~~~~~i~~~~~~~ 236 (352)
T 1e3j_A 165 GVQLGTTVLVIGAGPIGLVSVLAAKAYGA-FVVCTARSPRRLEVAK----NCGAD---VTLVVDPAKEEESSIIERIRSA 236 (352)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHH----HTTCS---EEEECCTTTSCHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHH----HhCCC---EEEcCcccccHHHHHHHHhccc
Confidence 456789999999875 7777777775 77 59999998 6666654 34543 2222110 111 0 0
Q ss_pred -CCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 142 -PEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 142 -~~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
...+|+|+... +. ...+....++|+++|.++..
T Consensus 237 ~g~g~D~vid~~-g~--------~~~~~~~~~~l~~~G~iv~~ 270 (352)
T 1e3j_A 237 IGDLPNVTIDCS-GN--------EKCITIGINITRTGGTLMLV 270 (352)
T ss_dssp SSSCCSEEEECS-CC--------HHHHHHHHHHSCTTCEEEEC
T ss_pred cCCCCCEEEECC-CC--------HHHHHHHHHHHhcCCEEEEE
Confidence 24699998522 11 12355566789999998754
|
| >3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus} | Back alignment and structure |
|---|
Probab=92.80 E-value=0.11 Score=48.69 Aligned_cols=88 Identities=23% Similarity=0.296 Sum_probs=55.7
Q ss_pred CCCEEEEE-CCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcc------cccCCCCCcccE
Q 016351 78 QGKTVLDV-GTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGS------VEDIVLPEKVDV 147 (391)
Q Consensus 78 ~~~~VLDl-GcGt-G~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d------~~~~~~~~~~D~ 147 (391)
++.+||-+ |+|. |.++..+++. |+ +|++++.+ +-++.+++ .|.. .++..+ +.+. ..+.+|+
T Consensus 150 ~g~~VlV~gg~G~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~----lGa~---~vi~~~~~~~~~~~~~-~~~g~Dv 220 (346)
T 3fbg_A 150 EGKTLLIINGAGGVGSIATQIAKAYGL-RVITTASRNETIEWTKK----MGAD---IVLNHKESLLNQFKTQ-GIELVDY 220 (346)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEECCSHHHHHHHHH----HTCS---EEECTTSCHHHHHHHH-TCCCEEE
T ss_pred CCCEEEEEcCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHh----cCCc---EEEECCccHHHHHHHh-CCCCccE
Confidence 68899999 4554 7777777775 77 89999998 66666665 3432 222211 1111 1257999
Q ss_pred EEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 148 IISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 148 Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
|+... + -...+....++|+++|.++..
T Consensus 221 v~d~~-g--------~~~~~~~~~~~l~~~G~iv~~ 247 (346)
T 3fbg_A 221 VFCTF-N--------TDMYYDDMIQLVKPRGHIATI 247 (346)
T ss_dssp EEESS-C--------HHHHHHHHHHHEEEEEEEEES
T ss_pred EEECC-C--------chHHHHHHHHHhccCCEEEEE
Confidence 88521 1 123456667889999998743
|
| >3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* | Back alignment and structure |
|---|
Probab=92.79 E-value=0.065 Score=49.73 Aligned_cols=95 Identities=25% Similarity=0.240 Sum_probs=58.8
Q ss_pred HhcCCCCCCCEEEEEC-Cc-ccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccC-------
Q 016351 71 FQNKHHFQGKTVLDVG-TG-SGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDI------- 139 (391)
Q Consensus 71 ~~~~~~~~~~~VLDlG-cG-tG~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~------- 139 (391)
.......++++||-.| +| .|.++..+++. |+ +|++++.+ +.++.+++ .|.. .++..+-.++
T Consensus 133 ~~~~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~----~Ga~---~~~~~~~~~~~~~~~~~ 204 (325)
T 3jyn_A 133 RQTYQVKPGEIILFHAAAGGVGSLACQWAKALGA-KLIGTVSSPEKAAHAKA----LGAW---ETIDYSHEDVAKRVLEL 204 (325)
T ss_dssp HTTSCCCTTCEEEESSTTSHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHH----HTCS---EEEETTTSCHHHHHHHH
T ss_pred HHhcCCCCCCEEEEEcCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH----cCCC---EEEeCCCccHHHHHHHH
Confidence 3334556789999999 34 47777777765 88 89999998 66666654 3432 2232221111
Q ss_pred CCCCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 140 VLPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 140 ~~~~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
.....+|+|+... +. ..+....+.|+++|.++..
T Consensus 205 ~~~~g~Dvvid~~-g~---------~~~~~~~~~l~~~G~iv~~ 238 (325)
T 3jyn_A 205 TDGKKCPVVYDGV-GQ---------DTWLTSLDSVAPRGLVVSF 238 (325)
T ss_dssp TTTCCEEEEEESS-CG---------GGHHHHHTTEEEEEEEEEC
T ss_pred hCCCCceEEEECC-Ch---------HHHHHHHHHhcCCCEEEEE
Confidence 1124799998522 21 1244566889999998854
|
| >2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ... | Back alignment and structure |
|---|
Probab=92.68 E-value=0.29 Score=46.21 Aligned_cols=96 Identities=19% Similarity=0.229 Sum_probs=59.5
Q ss_pred hcCCCCCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcc-----ccc-C-C-
Q 016351 72 QNKHHFQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGS-----VED-I-V- 140 (391)
Q Consensus 72 ~~~~~~~~~~VLDlGcGt-G~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d-----~~~-~-~- 140 (391)
......++.+||-+|+|. |.++..+|++ |+++|+++|.+ +.++.++ ..|.. .++..+ +.+ + .
T Consensus 185 ~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~----~lGa~---~vi~~~~~~~~~~~~~~~~ 257 (374)
T 2jhf_A 185 KVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAK----EVGAT---ECVNPQDYKKPIQEVLTEM 257 (374)
T ss_dssp TTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHH----HTTCS---EEECGGGCSSCHHHHHHHH
T ss_pred hccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHH----HhCCc---eEecccccchhHHHHHHHH
Confidence 334456789999999876 7777777775 77689999988 6666654 34442 222211 111 0 0
Q ss_pred CCCcccEEEEccccccccCcchHHHHHHHHhccccCC-eEEEcc
Q 016351 141 LPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPT-GVMYPS 183 (391)
Q Consensus 141 ~~~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~g-G~ii~~ 183 (391)
..+.+|+|+-.. +. ...+....++|+++ |.++..
T Consensus 258 ~~~g~D~vid~~-g~--------~~~~~~~~~~l~~~~G~iv~~ 292 (374)
T 2jhf_A 258 SNGGVDFSFEVI-GR--------LDTMVTALSCCQEAYGVSVIV 292 (374)
T ss_dssp TTSCBSEEEECS-CC--------HHHHHHHHHHBCTTTCEEEEC
T ss_pred hCCCCcEEEECC-CC--------HHHHHHHHHHhhcCCcEEEEe
Confidence 113799998521 11 23455666789999 988743
|
| >3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A* | Back alignment and structure |
|---|
Probab=92.63 E-value=0.17 Score=52.21 Aligned_cols=106 Identities=17% Similarity=0.142 Sum_probs=66.5
Q ss_pred CCCEEEEECCcccHHHHHHHHcC----------C---CeEEEEec---h-HHHHH-----------HHHHHHHcC-----
Q 016351 78 QGKTVLDVGTGSGILAIWSAQAG----------A---RKVYAVEA---T-KMSDH-----------ARTLVKANN----- 124 (391)
Q Consensus 78 ~~~~VLDlGcGtG~l~~~~a~~g----------~---~~V~avD~---s-~~~~~-----------a~~~~~~~~----- 124 (391)
+..+|||+|.|+|...+.+.++- . -+++++|. + +.+.. +++..+...
T Consensus 58 ~~~~i~e~gfG~G~n~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~ 137 (689)
T 3pvc_A 58 QSCIFAETGFGTGLNFLTLWRDFALFRQQSPNATLRRLHYISFEKYPLHVADLASAHARWPELASFAEQLRAQWPLPLAG 137 (689)
T ss_dssp SEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCCCSE
T ss_pred CceEEEEecCchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEeeCCCCCHHHHHHHHHhCcchhHHHHHHHHhCcccCCC
Confidence 34689999999999877665531 1 26899998 4 32322 122233221
Q ss_pred -----CCC---cEEEEEcccccCC--C----CCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 125 -----LQD---VVEVIEGSVEDIV--L----PEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 125 -----~~~---~v~~i~~d~~~~~--~----~~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
+.+ .++++.+|+.+.- + ...+|.++.+.+......+--...++..+.++++|||.+...
T Consensus 138 ~~r~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~da~flD~f~p~~np~~w~~~~~~~l~~~~~~g~~~~t~ 210 (689)
T 3pvc_A 138 CHRILLADGAITLDLWFGDVNTLLPTLDDSLNNQVDAWFLDGFAPAKNPDMWNEQLFNAMARMTRPGGTFSTF 210 (689)
T ss_dssp EEEEEETTTTEEEEEEESCHHHHGGGCCGGGTTCEEEEEECSSCC--CCTTCSHHHHHHHHHHEEEEEEEEES
T ss_pred ceEEEecCCcEEEEEEccCHHHHHhhcccccCCceeEEEECCCCCCCChhhhhHHHHHHHHHHhCCCCEEEec
Confidence 111 4788889987642 2 257999998876433322222357888899999999987643
|
| >1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A* | Back alignment and structure |
|---|
Probab=92.24 E-value=0.29 Score=45.33 Aligned_cols=94 Identities=15% Similarity=0.131 Sum_probs=57.1
Q ss_pred HHhcCCCCCCCEEEEECC--cccHHHHHHHH-cCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEccccc---C---
Q 016351 70 IFQNKHHFQGKTVLDVGT--GSGILAIWSAQ-AGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVED---I--- 139 (391)
Q Consensus 70 i~~~~~~~~~~~VLDlGc--GtG~l~~~~a~-~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~---~--- 139 (391)
+.+.....++++||..|+ |.|.....+++ .|+ +|++++.+ +.++.++ ..+.. . ++ |..+ +
T Consensus 137 l~~~~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~-~V~~~~~~~~~~~~~~----~~g~~--~-~~--d~~~~~~~~~~ 206 (333)
T 1v3u_A 137 LLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGC-KVVGAAGSDEKIAYLK----QIGFD--A-AF--NYKTVNSLEEA 206 (333)
T ss_dssp HHTTSCCCSSCEEEEESTTBHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHH----HTTCS--E-EE--ETTSCSCHHHH
T ss_pred HHHhhCCCCCCEEEEecCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHH----hcCCc--E-EE--ecCCHHHHHHH
Confidence 333445567899999998 34666555555 477 89999998 6666553 23432 1 12 2221 1
Q ss_pred --C-CCCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 140 --V-LPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 140 --~-~~~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
. ..+.+|+++... +. ..+....+.|+++|.++..
T Consensus 207 ~~~~~~~~~d~vi~~~-g~---------~~~~~~~~~l~~~G~~v~~ 243 (333)
T 1v3u_A 207 LKKASPDGYDCYFDNV-GG---------EFLNTVLSQMKDFGKIAIC 243 (333)
T ss_dssp HHHHCTTCEEEEEESS-CH---------HHHHHHHTTEEEEEEEEEC
T ss_pred HHHHhCCCCeEEEECC-Ch---------HHHHHHHHHHhcCCEEEEE
Confidence 0 114699998632 11 1356667889999998754
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=92.11 E-value=0.93 Score=42.89 Aligned_cols=95 Identities=14% Similarity=0.184 Sum_probs=66.0
Q ss_pred CCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCC-cEEEEEcccccCCCCCcccEEEEccccc
Q 016351 78 QGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQD-VVEVIEGSVEDIVLPEKVDVIISEWMGY 155 (391)
Q Consensus 78 ~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~-~v~~i~~d~~~~~~~~~~D~Ivse~~~~ 155 (391)
.+..||.|+.+.|.++..++.. .++.+.-| -.....+.+.+.|++.+ .+++... .+ .++..+|+|+..+.
T Consensus 38 ~~~~~~~~~d~~gal~~~~~~~---~~~~~~ds~~~~~~~~~n~~~~~~~~~~~~~~~~--~~-~~~~~~~~v~~~lp-- 109 (375)
T 4dcm_A 38 IRGPVLILNDAFGALSCALAEH---KPYSIGDSYISELATRENLRLNGIDESSVKFLDS--TA-DYPQQPGVVLIKVP-- 109 (375)
T ss_dssp CCSCEEEECCSSSHHHHHTGGG---CCEEEESCHHHHHHHHHHHHHTTCCGGGSEEEET--TS-CCCSSCSEEEEECC--
T ss_pred CCCCEEEECCCCCHHHHhhccC---CceEEEhHHHHHHHHHHHHHHcCCCccceEeccc--cc-ccccCCCEEEEEcC--
Confidence 3457999999999999888754 35555435 44456788999999975 3666542 12 33578999986432
Q ss_pred cccCcchHHHHHHHHhccccCCeEEEc
Q 016351 156 FLLRESMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 156 ~~~~e~~l~~~l~~~~~~L~~gG~ii~ 182 (391)
.....+...+..+...|++|+.++.
T Consensus 110 --k~~~~l~~~L~~l~~~l~~~~~i~~ 134 (375)
T 4dcm_A 110 --KTLALLEQQLRALRKVVTSDTRIIA 134 (375)
T ss_dssp --SCHHHHHHHHHHHHTTCCTTSEEEE
T ss_pred --CCHHHHHHHHHHHHhhCCCCCEEEE
Confidence 2223466778888899999998763
|
| >4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli} | Back alignment and structure |
|---|
Probab=92.07 E-value=0.21 Score=46.54 Aligned_cols=94 Identities=20% Similarity=0.247 Sum_probs=58.3
Q ss_pred CCCCCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcc---cccC----CCCC
Q 016351 74 KHHFQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGS---VEDI----VLPE 143 (391)
Q Consensus 74 ~~~~~~~~VLDlGcGt-G~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d---~~~~----~~~~ 143 (391)
....++.+||-.|+|. |.++..++++ |+..++++|.+ +-++.|+ +.|.. .++..+ ..+. ....
T Consensus 156 ~~~~~g~~VlV~GaG~vG~~aiq~ak~~G~~~vi~~~~~~~k~~~a~----~lGa~---~~i~~~~~~~~~~~~~~~~~~ 228 (346)
T 4a2c_A 156 AQGCENKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDISSEKLALAK----SFGAM---QTFNSSEMSAPQMQSVLRELR 228 (346)
T ss_dssp TTCCTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHH----HTTCS---EEEETTTSCHHHHHHHHGGGC
T ss_pred hccCCCCEEEEECCCCcchHHHHHHHHcCCcEEEEEechHHHHHHHH----HcCCe---EEEeCCCCCHHHHHHhhcccC
Confidence 3456789999999986 6667767765 88788999998 6566554 44543 233221 1111 1114
Q ss_pred cccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 144 KVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 144 ~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
.+|+|+... + ....++...++|+++|.++..
T Consensus 229 g~d~v~d~~-G--------~~~~~~~~~~~l~~~G~~v~~ 259 (346)
T 4a2c_A 229 FNQLILETA-G--------VPQTVELAVEIAGPHAQLALV 259 (346)
T ss_dssp SSEEEEECS-C--------SHHHHHHHHHHCCTTCEEEEC
T ss_pred Ccccccccc-c--------ccchhhhhhheecCCeEEEEE
Confidence 578777421 1 123456666789999988744
|
| >2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.85 E-value=0.24 Score=46.31 Aligned_cols=90 Identities=22% Similarity=0.252 Sum_probs=56.7
Q ss_pred CCCCCCEEEEECC--cccHHHHHHHH-cCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccc---cCC------C
Q 016351 75 HHFQGKTVLDVGT--GSGILAIWSAQ-AGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVE---DIV------L 141 (391)
Q Consensus 75 ~~~~~~~VLDlGc--GtG~l~~~~a~-~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~---~~~------~ 141 (391)
...++++||.+|+ |.|.....+++ .|+ +|++++.+ +.++.+++ .+.. .++ |.. ++. .
T Consensus 166 ~~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga-~V~~~~~~~~~~~~~~~----~g~~---~~~--d~~~~~~~~~~~~~~~ 235 (347)
T 2hcy_A 166 NLMAGHWVAISGAAGGLGSLAVQYAKAMGY-RVLGIDGGEGKEELFRS----IGGE---VFI--DFTKEKDIVGAVLKAT 235 (347)
T ss_dssp TCCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECSTTHHHHHHH----TTCC---EEE--ETTTCSCHHHHHHHHH
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCCC-cEEEEcCCHHHHHHHHH----cCCc---eEE--ecCccHhHHHHHHHHh
Confidence 4567899999998 35666666665 477 89999988 66655543 3432 222 222 110 0
Q ss_pred CCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 142 PEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 142 ~~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
.+.+|+|+... + ....+....+.|+++|.++..
T Consensus 236 ~~~~D~vi~~~-g--------~~~~~~~~~~~l~~~G~iv~~ 268 (347)
T 2hcy_A 236 DGGAHGVINVS-V--------SEAAIEASTRYVRANGTTVLV 268 (347)
T ss_dssp TSCEEEEEECS-S--------CHHHHHHHTTSEEEEEEEEEC
T ss_pred CCCCCEEEECC-C--------cHHHHHHHHHHHhcCCEEEEE
Confidence 12689998632 1 123567778899999998744
|
| >3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* | Back alignment and structure |
|---|
Probab=91.80 E-value=0.079 Score=49.30 Aligned_cols=95 Identities=25% Similarity=0.220 Sum_probs=58.0
Q ss_pred HhcCCCCCCCEEEEECC-c-ccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccC-------
Q 016351 71 FQNKHHFQGKTVLDVGT-G-SGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDI------- 139 (391)
Q Consensus 71 ~~~~~~~~~~~VLDlGc-G-tG~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~------- 139 (391)
.......++++||-+|+ | .|.++..+++. |+ +|++++.+ +.++.+++ .|.. .++..+-.++
T Consensus 141 ~~~~~~~~g~~vlV~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~----~ga~---~~~~~~~~~~~~~~~~~ 212 (334)
T 3qwb_A 141 NEAYHVKKGDYVLLFAAAGGVGLILNQLLKMKGA-HTIAVASTDEKLKIAKE----YGAE---YLINASKEDILRQVLKF 212 (334)
T ss_dssp HTTSCCCTTCEEEESSTTBHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHH----TTCS---EEEETTTSCHHHHHHHH
T ss_pred HHhccCCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH----cCCc---EEEeCCCchHHHHHHHH
Confidence 33345567899999994 3 36777777765 77 89999998 66665543 3432 2232211111
Q ss_pred CCCCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 140 VLPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 140 ~~~~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
.....+|+|+... +. ..+....+.|+++|.++..
T Consensus 213 ~~~~g~D~vid~~-g~---------~~~~~~~~~l~~~G~iv~~ 246 (334)
T 3qwb_A 213 TNGKGVDASFDSV-GK---------DTFEISLAALKRKGVFVSF 246 (334)
T ss_dssp TTTSCEEEEEECC-GG---------GGHHHHHHHEEEEEEEEEC
T ss_pred hCCCCceEEEECC-Ch---------HHHHHHHHHhccCCEEEEE
Confidence 1125799998632 21 1244556789999998854
|
| >4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=91.63 E-value=0.061 Score=50.36 Aligned_cols=95 Identities=25% Similarity=0.249 Sum_probs=59.5
Q ss_pred HHhcCCCCCCCEEEEECC--cccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccC------
Q 016351 70 IFQNKHHFQGKTVLDVGT--GSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDI------ 139 (391)
Q Consensus 70 i~~~~~~~~~~~VLDlGc--GtG~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~------ 139 (391)
+.+.....++++||-.|+ |.|.++..++++ |+ +|++++.+ +.++.+++ .|.. .++..+ .++
T Consensus 151 l~~~~~~~~g~~VlV~Gasg~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~----~ga~---~v~~~~-~~~~~~v~~ 221 (342)
T 4eye_A 151 YARRGQLRAGETVLVLGAAGGIGTAAIQIAKGMGA-KVIAVVNRTAATEFVKS----VGAD---IVLPLE-EGWAKAVRE 221 (342)
T ss_dssp HHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHH----HTCS---EEEESS-TTHHHHHHH
T ss_pred HHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHh----cCCc---EEecCc-hhHHHHHHH
Confidence 434445567899999997 347777777775 77 89999998 66666654 2432 223222 221
Q ss_pred -CCCCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 140 -VLPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 140 -~~~~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
.....+|+|+... +. . .+....+.|+++|.++..
T Consensus 222 ~~~~~g~Dvvid~~-g~----~-----~~~~~~~~l~~~G~iv~~ 256 (342)
T 4eye_A 222 ATGGAGVDMVVDPI-GG----P-----AFDDAVRTLASEGRLLVV 256 (342)
T ss_dssp HTTTSCEEEEEESC-C-----------CHHHHHHTEEEEEEEEEC
T ss_pred HhCCCCceEEEECC-ch----h-----HHHHHHHhhcCCCEEEEE
Confidence 1124799998522 21 1 244556789999998854
|
| >1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A | Back alignment and structure |
|---|
Probab=91.62 E-value=0.18 Score=46.92 Aligned_cols=90 Identities=18% Similarity=0.089 Sum_probs=56.5
Q ss_pred CCCCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC-------CCc
Q 016351 75 HHFQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL-------PEK 144 (391)
Q Consensus 75 ~~~~~~~VLDlGcGt-G~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~-------~~~ 144 (391)
...++.+||-+|+|. |.++..+++. |+ +|++++.+ ..++.+++ .|.. .++ |..+... .+.
T Consensus 161 ~~~~g~~VlV~GaG~vG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~----lGa~---~~~--d~~~~~~~~~~~~~~~~ 230 (339)
T 1rjw_A 161 GAKPGEWVAIYGIGGLGHVAVQYAKAMGL-NVVAVDIGDEKLELAKE----LGAD---LVV--NPLKEDAAKFMKEKVGG 230 (339)
T ss_dssp TCCTTCEEEEECCSTTHHHHHHHHHHTTC-EEEEECSCHHHHHHHHH----TTCS---EEE--CTTTSCHHHHHHHHHSS
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHH----CCCC---EEe--cCCCccHHHHHHHHhCC
Confidence 456789999999974 7777777765 77 89999988 66666543 4432 222 2211100 046
Q ss_pred ccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 145 VDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 145 ~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
+|+|+... +. ...+....++|+++|.++..
T Consensus 231 ~d~vid~~-g~--------~~~~~~~~~~l~~~G~~v~~ 260 (339)
T 1rjw_A 231 VHAAVVTA-VS--------KPAFQSAYNSIRRGGACVLV 260 (339)
T ss_dssp EEEEEESS-CC--------HHHHHHHHHHEEEEEEEEEC
T ss_pred CCEEEECC-CC--------HHHHHHHHHHhhcCCEEEEe
Confidence 89988522 11 12455666789999998744
|
| >3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A* | Back alignment and structure |
|---|
Probab=91.58 E-value=1.9 Score=38.17 Aligned_cols=74 Identities=15% Similarity=0.173 Sum_probs=52.4
Q ss_pred CCCCEEEEECCc--ccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC---------
Q 016351 77 FQGKTVLDVGTG--SGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL--------- 141 (391)
Q Consensus 77 ~~~~~VLDlGcG--tG~---l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~--------- 141 (391)
.++++||-.|++ +|+ ++..+++.|+ +|+.++.+ ...+.+.+..+..+- .++.++.+|+.+...
T Consensus 5 l~~k~vlVTGasg~~GIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~v~~~~~~~~ 82 (266)
T 3oig_A 5 LEGRNIVVMGVANKRSIAWGIARSLHEAGA-RLIFTYAGERLEKSVHELAGTLDR-NDSIILPCDVTNDAEIETCFASIK 82 (266)
T ss_dssp CTTCEEEEECCCSTTSHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHHHTSSS-CCCEEEECCCSSSHHHHHHHHHHH
T ss_pred cCCCEEEEEcCCCCCcHHHHHHHHHHHCCC-EEEEecCchHHHHHHHHHHHhcCC-CCceEEeCCCCCHHHHHHHHHHHH
Confidence 467899999987 554 5667778888 79999887 555666665555442 258999999987531
Q ss_pred --CCcccEEEEcc
Q 016351 142 --PEKVDVIISEW 152 (391)
Q Consensus 142 --~~~~D~Ivse~ 152 (391)
-+++|++|...
T Consensus 83 ~~~g~id~li~~A 95 (266)
T 3oig_A 83 EQVGVIHGIAHCI 95 (266)
T ss_dssp HHHSCCCEEEECC
T ss_pred HHhCCeeEEEEcc
Confidence 04789998743
|
| >4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A* | Back alignment and structure |
|---|
Probab=91.51 E-value=0.063 Score=50.01 Aligned_cols=98 Identities=16% Similarity=0.192 Sum_probs=59.8
Q ss_pred HHHhcCCCCCCCEEEEECC--cccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccC-----
Q 016351 69 SIFQNKHHFQGKTVLDVGT--GSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDI----- 139 (391)
Q Consensus 69 ~i~~~~~~~~~~~VLDlGc--GtG~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~----- 139 (391)
++.+.....++++||-.|+ |.|..+..+++. |+ +|++++.+ +.++.+. +..|.. .++...-.++
T Consensus 140 al~~~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~---~~~g~~---~~~~~~~~~~~~~~~ 212 (336)
T 4b7c_A 140 ALLDVGQPKNGETVVISGAAGAVGSVAGQIARLKGC-RVVGIAGGAEKCRFLV---EELGFD---GAIDYKNEDLAAGLK 212 (336)
T ss_dssp HHHHTTCCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHH---HTTCCS---EEEETTTSCHHHHHH
T ss_pred HHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHH---HHcCCC---EEEECCCHHHHHHHH
Confidence 3434445667899999998 347777666665 77 89999988 6555442 234442 2222111111
Q ss_pred -CCCCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 140 -VLPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 140 -~~~~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
...+.+|+++... +. ..+....+.|+++|.++..
T Consensus 213 ~~~~~~~d~vi~~~-g~---------~~~~~~~~~l~~~G~iv~~ 247 (336)
T 4b7c_A 213 RECPKGIDVFFDNV-GG---------EILDTVLTRIAFKARIVLC 247 (336)
T ss_dssp HHCTTCEEEEEESS-CH---------HHHHHHHTTEEEEEEEEEC
T ss_pred HhcCCCceEEEECC-Cc---------chHHHHHHHHhhCCEEEEE
Confidence 0125699988622 11 2466677899999998854
|
| >3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A* | Back alignment and structure |
|---|
Probab=91.45 E-value=0.57 Score=48.01 Aligned_cols=106 Identities=18% Similarity=0.130 Sum_probs=66.2
Q ss_pred CCCEEEEECCcccHHHHHHHHcC-----------C--CeEEEEec---h-HHHHHH-----------HHHHHHcCC----
Q 016351 78 QGKTVLDVGTGSGILAIWSAQAG-----------A--RKVYAVEA---T-KMSDHA-----------RTLVKANNL---- 125 (391)
Q Consensus 78 ~~~~VLDlGcGtG~l~~~~a~~g-----------~--~~V~avD~---s-~~~~~a-----------~~~~~~~~~---- 125 (391)
+.-+|||+|-|+|+..+.+.+.. . -+++++|. + +.+..+ ++..+....
T Consensus 66 ~~~~i~e~gfG~Gln~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~ 145 (676)
T 3ps9_A 66 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG 145 (676)
T ss_dssp SEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHHCCCCCSE
T ss_pred CceEEEEeCCchHHHHHHHHHHHHHhhhhCcCCCCceEEEEEEeCCCCCHHHHHHHHHhChhhHHHHHHHHHhCcccCCC
Confidence 34689999999998776654431 1 16899998 5 444322 233322211
Q ss_pred ------C---CcEEEEEcccccCC--C----CCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 126 ------Q---DVVEVIEGSVEDIV--L----PEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 126 ------~---~~v~~i~~d~~~~~--~----~~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
. -.+++..+|+.+.- + ...+|+|+.+.+......+---..++..+.++++|||.+...
T Consensus 146 ~~~~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~d~~~~D~f~p~~np~~w~~~~~~~l~~~~~~g~~~~t~ 218 (676)
T 3ps9_A 146 CHRLLLDAGRVTLDLWFGDINELTSQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLATF 218 (676)
T ss_dssp EEEEEEGGGTEEEEEEESCHHHHGGGBCGGGTTCEEEEEECCSCGGGCGGGSCHHHHHHHHHHEEEEEEEEES
T ss_pred ceEEEecCCcEEEEEecCCHHHHHHhcccccCCcccEEEECCCCCcCChhhhhHHHHHHHHHHhCCCCEEEec
Confidence 0 13567778876631 1 257999999876543333222357888999999999988743
|
| >4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius} | Back alignment and structure |
|---|
Probab=91.26 E-value=0.79 Score=40.89 Aligned_cols=74 Identities=23% Similarity=0.209 Sum_probs=57.1
Q ss_pred CCCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC----------
Q 016351 76 HFQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL---------- 141 (391)
Q Consensus 76 ~~~~~~VLDlGcGtG~---l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~---------- 141 (391)
.++++++|--|+++|+ .+..+++.|+ +|+.+|.+ +.++.+.+.++..+- ++.+++.|+.+..-
T Consensus 4 sL~gKvalVTGas~GIG~aiA~~la~~Ga-~Vv~~~~~~~~~~~~~~~i~~~g~--~~~~~~~Dvt~~~~v~~~~~~~~~ 80 (254)
T 4fn4_A 4 SLKNKVVIVTGAGSGIGRAIAKKFALNDS-IVVAVELLEDRLNQIVQELRGMGK--EVLGVKADVSKKKDVEEFVRRTFE 80 (254)
T ss_dssp GGTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCC--cEEEEEccCCCHHHHHHHHHHHHH
Confidence 3578999999999986 5667788898 79999999 777776666666653 48999999877521
Q ss_pred -CCcccEEEEcc
Q 016351 142 -PEKVDVIISEW 152 (391)
Q Consensus 142 -~~~~D~Ivse~ 152 (391)
-++.|++|.+.
T Consensus 81 ~~G~iDiLVNNA 92 (254)
T 4fn4_A 81 TYSRIDVLCNNA 92 (254)
T ss_dssp HHSCCCEEEECC
T ss_pred HcCCCCEEEECC
Confidence 16899999864
|
| >3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A | Back alignment and structure |
|---|
Probab=91.20 E-value=0.25 Score=48.44 Aligned_cols=70 Identities=16% Similarity=0.183 Sum_probs=50.6
Q ss_pred CEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC-----------------
Q 016351 80 KTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL----------------- 141 (391)
Q Consensus 80 ~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~----------------- 141 (391)
-+++|+-||.|.+++.+.++|...|.++|++ ..++..+.+... .....++.+|+.++..
T Consensus 89 ~~viDLFaG~GGlslG~~~aG~~~v~avE~d~~A~~ty~~N~~~---~p~~~~~~~DI~~i~~~~~~~~~~~~~~~~i~~ 165 (482)
T 3me5_A 89 FRFIDLFAGIGGIRRGFESIGGQCVFTSEWNKHAVRTYKANHYC---DPATHHFNEDIRDITLSHQEGVSDEAAAEHIRQ 165 (482)
T ss_dssp EEEEEESCTTSHHHHHHHTTTEEEEEEECCCHHHHHHHHHHSCC---CTTTCEEESCTHHHHCTTCTTSCHHHHHHHHHH
T ss_pred ceEEEecCCccHHHHHHHHCCCEEEEEEeCCHHHHHHHHHhccc---CCCcceeccchhhhhhccccccchhhHHhhhhh
Confidence 5899999999999999999998779999999 555544444311 1124567789887642
Q ss_pred -CCcccEEEEcc
Q 016351 142 -PEKVDVIISEW 152 (391)
Q Consensus 142 -~~~~D~Ivse~ 152 (391)
...+|+|+.-+
T Consensus 166 ~~~~~Dvl~gGp 177 (482)
T 3me5_A 166 HIPEHDVLLAGF 177 (482)
T ss_dssp HSCCCSEEEEEC
T ss_pred cCCCCCEEEecC
Confidence 13689998744
|
| >2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A* | Back alignment and structure |
|---|
Probab=91.08 E-value=0.38 Score=45.07 Aligned_cols=85 Identities=21% Similarity=0.294 Sum_probs=54.4
Q ss_pred CEEEEECCcc-cHHH-HHHH-Hc-CCCeEEEEech-H---HHHHHHHHHHHcCCCCcEEEEEc---cc---ccCCCCCcc
Q 016351 80 KTVLDVGTGS-GILA-IWSA-QA-GARKVYAVEAT-K---MSDHARTLVKANNLQDVVEVIEG---SV---EDIVLPEKV 145 (391)
Q Consensus 80 ~~VLDlGcGt-G~l~-~~~a-~~-g~~~V~avD~s-~---~~~~a~~~~~~~~~~~~v~~i~~---d~---~~~~~~~~~ 145 (391)
.+||-+|+|. |.++ ..+| ++ |+++|++++.+ + .++.+++ .|. +.+.. |. .++ .+.+
T Consensus 174 ~~VlV~GaG~vG~~a~iqla~k~~Ga~~Vi~~~~~~~~~~~~~~~~~----lGa----~~v~~~~~~~~~i~~~--~gg~ 243 (357)
T 2b5w_A 174 SSAFVLGNGSLGLLTLAMLKVDDKGYENLYCLGRRDRPDPTIDIIEE----LDA----TYVDSRQTPVEDVPDV--YEQM 243 (357)
T ss_dssp CEEEEECCSHHHHHHHHHHHHCTTCCCEEEEEECCCSSCHHHHHHHH----TTC----EEEETTTSCGGGHHHH--SCCE
T ss_pred CEEEEECCCHHHHHHHHHHHHHHcCCcEEEEEeCCcccHHHHHHHHH----cCC----cccCCCccCHHHHHHh--CCCC
Confidence 8999999865 7777 7778 65 78569999998 6 6666653 443 22211 11 111 1368
Q ss_pred cEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 146 DVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 146 D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
|+|+--. + . ...+....++|+++|+++..
T Consensus 244 Dvvid~~-g----~----~~~~~~~~~~l~~~G~iv~~ 272 (357)
T 2b5w_A 244 DFIYEAT-G----F----PKHAIQSVQALAPNGVGALL 272 (357)
T ss_dssp EEEEECS-C----C----HHHHHHHHHHEEEEEEEEEC
T ss_pred CEEEECC-C----C----hHHHHHHHHHHhcCCEEEEE
Confidence 9988421 1 1 12455667889999998754
|
| >4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=91.07 E-value=0.54 Score=42.01 Aligned_cols=74 Identities=23% Similarity=0.251 Sum_probs=56.3
Q ss_pred CCCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC-----------
Q 016351 76 HFQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV----------- 140 (391)
Q Consensus 76 ~~~~~~VLDlGcGtG~---l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~----------- 140 (391)
.++++++|--|++.|+ .+..+++.|+ +|+.+|.+ +.++.+.+.+...+. ++..+..|+.+..
T Consensus 6 ~L~gKvalVTGas~GIG~aia~~la~~Ga-~Vvi~~~~~~~~~~~~~~l~~~g~--~~~~~~~Dv~~~~~v~~~~~~~~~ 82 (255)
T 4g81_D 6 DLTGKTALVTGSARGLGFAYAEGLAAAGA-RVILNDIRATLLAESVDTLTRKGY--DAHGVAFDVTDELAIEAAFSKLDA 82 (255)
T ss_dssp CCTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEECCSCHHHHHHHHHHHHHTTC--CEEECCCCTTCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCC--cEEEEEeeCCCHHHHHHHHHHHHH
Confidence 4688999999999885 5677888899 79999999 766666666666653 3888999987742
Q ss_pred CCCcccEEEEcc
Q 016351 141 LPEKVDVIISEW 152 (391)
Q Consensus 141 ~~~~~D~Ivse~ 152 (391)
.-++.|++|.+.
T Consensus 83 ~~G~iDiLVNNA 94 (255)
T 4g81_D 83 EGIHVDILINNA 94 (255)
T ss_dssp TTCCCCEEEECC
T ss_pred HCCCCcEEEECC
Confidence 126899999854
|
| >3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=91.06 E-value=0.54 Score=43.26 Aligned_cols=94 Identities=27% Similarity=0.284 Sum_probs=57.7
Q ss_pred hcCCCCCCCEEEEEC-Ccc-cHHHHHHHHc-CCCeEEEEechHHHHHHHHHHHHcCCCCcEEEEEccccc-CC-CCCccc
Q 016351 72 QNKHHFQGKTVLDVG-TGS-GILAIWSAQA-GARKVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVED-IV-LPEKVD 146 (391)
Q Consensus 72 ~~~~~~~~~~VLDlG-cGt-G~l~~~~a~~-g~~~V~avD~s~~~~~a~~~~~~~~~~~~v~~i~~d~~~-~~-~~~~~D 146 (391)
+.....++.+||-+| +|. |.++..+|+. |+ +|++++.++..+.++ +.|.. .++..+-.+ +. ....+|
T Consensus 146 ~~~~~~~g~~vlV~Ga~G~vG~~a~q~a~~~Ga-~vi~~~~~~~~~~~~----~lGa~---~~i~~~~~~~~~~~~~g~D 217 (321)
T 3tqh_A 146 NQAEVKQGDVVLIHAGAGGVGHLAIQLAKQKGT-TVITTASKRNHAFLK----ALGAE---QCINYHEEDFLLAISTPVD 217 (321)
T ss_dssp HHTTCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEECHHHHHHHH----HHTCS---EEEETTTSCHHHHCCSCEE
T ss_pred HhcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCC-EEEEEeccchHHHHH----HcCCC---EEEeCCCcchhhhhccCCC
Confidence 334566889999997 665 8888888876 77 799998554344444 34543 233222111 11 115799
Q ss_pred EEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 147 VIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 147 ~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
+|+-.. + -.. +....++|+++|.++..
T Consensus 218 ~v~d~~-g--------~~~-~~~~~~~l~~~G~iv~~ 244 (321)
T 3tqh_A 218 AVIDLV-G--------GDV-GIQSIDCLKETGCIVSV 244 (321)
T ss_dssp EEEESS-C--------HHH-HHHHGGGEEEEEEEEEC
T ss_pred EEEECC-C--------cHH-HHHHHHhccCCCEEEEe
Confidence 988521 1 122 36677899999998843
|
| >4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A* | Back alignment and structure |
|---|
Probab=90.99 E-value=0.12 Score=48.29 Aligned_cols=97 Identities=23% Similarity=0.107 Sum_probs=56.7
Q ss_pred CCCCCCEEEEECCcc-cHHHHHHHH-cCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEccccc----CCCCCcccE
Q 016351 75 HHFQGKTVLDVGTGS-GILAIWSAQ-AGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVED----IVLPEKVDV 147 (391)
Q Consensus 75 ~~~~~~~VLDlGcGt-G~l~~~~a~-~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~----~~~~~~~D~ 147 (391)
...++.+||-+|+|. |.++..+++ .+..+|+++|.+ +-++.++ ..|....+..-..|..+ +.-...+|.
T Consensus 160 ~~~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~~~r~~~~~----~~Ga~~~i~~~~~~~~~~v~~~t~g~g~d~ 235 (348)
T 4eez_A 160 GVKPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDINQDKLNLAK----KIGADVTINSGDVNPVDEIKKITGGLGVQS 235 (348)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHH----HTTCSEEEEC-CCCHHHHHHHHTTSSCEEE
T ss_pred CCCCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECcHHHhhhhh----hcCCeEEEeCCCCCHHHHhhhhcCCCCceE
Confidence 346789999999987 445555554 566689999999 6555544 34443222222222211 111245777
Q ss_pred EEEccccccccCcchHHHHHHHHhccccCCeEEEccc
Q 016351 148 IISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 148 Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~ 184 (391)
++....+ ...+....+.|+++|.++...
T Consensus 236 ~~~~~~~---------~~~~~~~~~~l~~~G~~v~~g 263 (348)
T 4eez_A 236 AIVCAVA---------RIAFEQAVASLKPMGKMVAVA 263 (348)
T ss_dssp EEECCSC---------HHHHHHHHHTEEEEEEEEECC
T ss_pred EEEeccC---------cchhheeheeecCCceEEEEe
Confidence 7643211 234566668899999987543
|
| >4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=90.77 E-value=0.098 Score=49.14 Aligned_cols=93 Identities=26% Similarity=0.232 Sum_probs=57.0
Q ss_pred hcCCCCCCCEEEEECC-c-ccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEccccc-------CC
Q 016351 72 QNKHHFQGKTVLDVGT-G-SGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVED-------IV 140 (391)
Q Consensus 72 ~~~~~~~~~~VLDlGc-G-tG~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~-------~~ 140 (391)
+.....++++||-.|+ | .|.++..+++. |+ +|++++.+ +.++.+++ .|.. .++..+-.+ ..
T Consensus 161 ~~~~~~~g~~VlV~Gg~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~----lGa~---~~~~~~~~~~~~~~~~~~ 232 (353)
T 4dup_A 161 QMAGLTEGESVLIHGGTSGIGTTAIQLARAFGA-EVYATAGSTGKCEACER----LGAK---RGINYRSEDFAAVIKAET 232 (353)
T ss_dssp TTTCCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHH----HTCS---EEEETTTSCHHHHHHHHH
T ss_pred HhcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHh----cCCC---EEEeCCchHHHHHHHHHh
Confidence 3344567899999953 3 47777777765 77 79999998 66666654 3432 222221111 11
Q ss_pred CCCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 141 LPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 141 ~~~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
...+|+|+... +. . .+....+.|+++|.++..
T Consensus 233 -~~g~Dvvid~~-g~-----~----~~~~~~~~l~~~G~iv~~ 264 (353)
T 4dup_A 233 -GQGVDIILDMI-GA-----A----YFERNIASLAKDGCLSII 264 (353)
T ss_dssp -SSCEEEEEESC-CG-----G----GHHHHHHTEEEEEEEEEC
T ss_pred -CCCceEEEECC-CH-----H----HHHHHHHHhccCCEEEEE
Confidence 34799998632 21 1 244556789999998744
|
| >2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=90.75 E-value=0.3 Score=45.53 Aligned_cols=91 Identities=19% Similarity=0.164 Sum_probs=56.1
Q ss_pred CCCCCCEEEEECC--cccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEccccc-------CCCCC
Q 016351 75 HHFQGKTVLDVGT--GSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVED-------IVLPE 143 (391)
Q Consensus 75 ~~~~~~~VLDlGc--GtG~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~-------~~~~~ 143 (391)
...++.+||.+|+ |.|.++..+++. |+ +|++++.+ +.++.+++ .|.. .++..+-.+ .....
T Consensus 163 ~~~~g~~vlV~Gasg~iG~~~~~~a~~~G~-~Vi~~~~~~~~~~~~~~----~ga~---~~~d~~~~~~~~~~~~~~~~~ 234 (343)
T 2eih_A 163 GVRPGDDVLVMAAGSGVSVAAIQIAKLFGA-RVIATAGSEDKLRRAKA----LGAD---ETVNYTHPDWPKEVRRLTGGK 234 (343)
T ss_dssp CCCTTCEEEECSTTSTTHHHHHHHHHHTTC-EEEEEESSHHHHHHHHH----HTCS---EEEETTSTTHHHHHHHHTTTT
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHh----cCCC---EEEcCCcccHHHHHHHHhCCC
Confidence 4557899999998 457777777765 77 89999998 66666653 2332 222211111 11124
Q ss_pred cccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 144 KVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 144 ~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
.+|+|+... + . . .+....+.|+++|.++..
T Consensus 235 ~~d~vi~~~-g----~-~----~~~~~~~~l~~~G~~v~~ 264 (343)
T 2eih_A 235 GADKVVDHT-G----A-L----YFEGVIKATANGGRIAIA 264 (343)
T ss_dssp CEEEEEESS-C----S-S----SHHHHHHHEEEEEEEEES
T ss_pred CceEEEECC-C----H-H----HHHHHHHhhccCCEEEEE
Confidence 799998632 2 1 1 244455678999988744
|
| >1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D | Back alignment and structure |
|---|
Probab=90.30 E-value=0.23 Score=45.43 Aligned_cols=88 Identities=16% Similarity=0.111 Sum_probs=55.8
Q ss_pred CCCCCEEEEECC--cccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEccc-ccC--CCCCcccEE
Q 016351 76 HFQGKTVLDVGT--GSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSV-EDI--VLPEKVDVI 148 (391)
Q Consensus 76 ~~~~~~VLDlGc--GtG~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~-~~~--~~~~~~D~I 148 (391)
..++++||-+|+ |.|.++..+++. |+ +|++++.+ +.++.+++ .|.. .++..+- .++ .. +.+|+|
T Consensus 123 ~~~g~~vlV~Ga~G~vG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~----~ga~---~~~~~~~~~~~~~~~-~~~d~v 193 (302)
T 1iz0_A 123 ARPGEKVLVQAAAGALGTAAVQVARAMGL-RVLAAASRPEKLALPLA----LGAE---EAATYAEVPERAKAW-GGLDLV 193 (302)
T ss_dssp CCTTCEEEESSTTBHHHHHHHHHHHHTTC-EEEEEESSGGGSHHHHH----TTCS---EEEEGGGHHHHHHHT-TSEEEE
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHh----cCCC---EEEECCcchhHHHHh-cCceEE
Confidence 567899999998 347777777765 77 89999998 65555543 3432 2222111 111 11 579999
Q ss_pred EEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 149 ISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 149 vse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
+. .+. + .+....+.|+++|.++..
T Consensus 194 id--~g~----~-----~~~~~~~~l~~~G~~v~~ 217 (302)
T 1iz0_A 194 LE--VRG----K-----EVEESLGLLAHGGRLVYI 217 (302)
T ss_dssp EE--CSC----T-----THHHHHTTEEEEEEEEEC
T ss_pred EE--CCH----H-----HHHHHHHhhccCCEEEEE
Confidence 86 332 1 245566889999988743
|
| >2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A* | Back alignment and structure |
|---|
Probab=90.28 E-value=0.87 Score=42.24 Aligned_cols=97 Identities=16% Similarity=0.182 Sum_probs=58.4
Q ss_pred HHhcCCCCCCCEEEEECC--cccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEc-ccccCC----
Q 016351 70 IFQNKHHFQGKTVLDVGT--GSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEG-SVEDIV---- 140 (391)
Q Consensus 70 i~~~~~~~~~~~VLDlGc--GtG~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~-d~~~~~---- 140 (391)
+.+.....++++||..|+ |.|..+..+++. |+ +|++++.+ ..++.+++ ..|.. .++.. +..++.
T Consensus 147 l~~~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~G~-~V~~~~~~~~~~~~~~~---~~g~~---~~~d~~~~~~~~~~~~ 219 (345)
T 2j3h_A 147 FYEVCSPKEGETVYVSAASGAVGQLVGQLAKMMGC-YVVGSAGSKEKVDLLKT---KFGFD---DAFNYKEESDLTAALK 219 (345)
T ss_dssp HHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHH---TSCCS---EEEETTSCSCSHHHHH
T ss_pred HHHHhCCCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH---HcCCc---eEEecCCHHHHHHHHH
Confidence 333345567899999997 347777666664 77 89999998 65555542 23432 12211 111110
Q ss_pred --CCCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 141 --LPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 141 --~~~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
..+.+|+++... + . ..+....+.|+++|.++..
T Consensus 220 ~~~~~~~d~vi~~~-g-------~--~~~~~~~~~l~~~G~~v~~ 254 (345)
T 2j3h_A 220 RCFPNGIDIYFENV-G-------G--KMLDAVLVNMNMHGRIAVC 254 (345)
T ss_dssp HHCTTCEEEEEESS-C-------H--HHHHHHHTTEEEEEEEEEC
T ss_pred HHhCCCCcEEEECC-C-------H--HHHHHHHHHHhcCCEEEEE
Confidence 124689998632 1 1 2466677899999998743
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=90.27 E-value=0.095 Score=61.67 Aligned_cols=100 Identities=14% Similarity=0.059 Sum_probs=48.0
Q ss_pred CCCEEEEECCcccHHHHHHHHc-C-----CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccC-C-CCCcccEE
Q 016351 78 QGKTVLDVGTGSGILAIWSAQA-G-----ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDI-V-LPEKVDVI 148 (391)
Q Consensus 78 ~~~~VLDlGcGtG~l~~~~a~~-g-----~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~-~-~~~~~D~I 148 (391)
+..+||+||.|+|..+..+.+. + ..+.+..|+| ...+.|+++++... ++.-.-|..+. . .+..||+|
T Consensus 1240 ~~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~~d----i~~~~~d~~~~~~~~~~~ydlv 1315 (2512)
T 2vz8_A 1240 PKMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQLH----VTQGQWDPANPAPGSLGKADLL 1315 (2512)
T ss_dssp SEEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHHHT----EEEECCCSSCCCC-----CCEE
T ss_pred CCceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhhcc----cccccccccccccCCCCceeEE
Confidence 4568999999999765443332 2 2368889999 77777777765531 33322232221 1 23679999
Q ss_pred EEccccccccCcchHHHHHHHHhccccCCeEEEccc
Q 016351 149 ISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 149 vse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~ 184 (391)
|+..+ +.....+...+..++++|+|||.++...
T Consensus 1316 ia~~v---l~~t~~~~~~l~~~~~lL~p~G~l~~~e 1348 (2512)
T 2vz8_A 1316 VCNCA---LATLGDPAVAVGNMAATLKEGGFLLLHT 1348 (2512)
T ss_dssp EEECC-----------------------CCEEEEEE
T ss_pred EEccc---ccccccHHHHHHHHHHhcCCCcEEEEEe
Confidence 97432 2222345667888999999999987653
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=89.99 E-value=0.21 Score=45.70 Aligned_cols=60 Identities=20% Similarity=0.244 Sum_probs=41.2
Q ss_pred cEEEEEcccccC-C-CC-CcccEEEEcccccccc--------------Cc---chHHHHHHHHhccccCCeEEEccccee
Q 016351 128 VVEVIEGSVEDI-V-LP-EKVDVIISEWMGYFLL--------------RE---SMFDSVICARDRWLKPTGVMYPSHARM 187 (391)
Q Consensus 128 ~v~~i~~d~~~~-~-~~-~~~D~Ivse~~~~~~~--------------~e---~~l~~~l~~~~~~L~~gG~ii~~~~~~ 187 (391)
+++++++|+.+. . ++ ++||+|++++.-.... ++ ..+..++.++.++|+|||.+++.....
T Consensus 21 ~~~i~~gD~~~~l~~l~~~s~DlIvtdPPY~~~~~y~~~~~~~~~~~~~~~~l~~l~~~~~~~~rvLk~~G~l~i~~~d~ 100 (297)
T 2zig_A 21 VHRLHVGDAREVLASFPEASVHLVVTSPPYWTLKRYEDTPGQLGHIEDYEAFLDELDRVWREVFRLLVPGGRLVIVVGDV 100 (297)
T ss_dssp CEEEEESCHHHHHTTSCTTCEEEEEECCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCE
T ss_pred CCEEEECcHHHHHhhCCCCceeEEEECCCCCCccccCCChhhhcccccHHHHHHHHHHHHHHHHHHcCCCcEEEEEECCC
Confidence 489999999884 2 33 7899999988532110 00 113456778899999999987765543
|
| >1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=89.75 E-value=0.7 Score=43.21 Aligned_cols=97 Identities=22% Similarity=0.223 Sum_probs=57.2
Q ss_pred HHhcCCCCCCCEEEEECC--cccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccC------
Q 016351 70 IFQNKHHFQGKTVLDVGT--GSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDI------ 139 (391)
Q Consensus 70 i~~~~~~~~~~~VLDlGc--GtG~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~------ 139 (391)
+.......++++||-.|+ |.|..+..+++. |+ +|++++.+ +.++.++ ..+.. .++..+-.++
T Consensus 162 l~~~~~~~~g~~vlV~GasggiG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~----~~ga~---~~~d~~~~~~~~~~~~ 233 (351)
T 1yb5_A 162 LIHSACVKAGESVLVHGASGGVGLAACQIARAYGL-KILGTAGTEEGQKIVL----QNGAH---EVFNHREVNYIDKIKK 233 (351)
T ss_dssp HHTTSCCCTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHH----HTTCS---EEEETTSTTHHHHHHH
T ss_pred HHHhhCCCCcCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCChhHHHHHH----HcCCC---EEEeCCCchHHHHHHH
Confidence 333344567899999997 346666666654 77 79999998 6555443 33432 2222111111
Q ss_pred -CCCCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEccc
Q 016351 140 -VLPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 140 -~~~~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~ 184 (391)
.....+|+++... +. ..+....++|+++|.++...
T Consensus 234 ~~~~~~~D~vi~~~-G~---------~~~~~~~~~l~~~G~iv~~g 269 (351)
T 1yb5_A 234 YVGEKGIDIIIEML-AN---------VNLSKDLSLLSHGGRVIVVG 269 (351)
T ss_dssp HHCTTCEEEEEESC-HH---------HHHHHHHHHEEEEEEEEECC
T ss_pred HcCCCCcEEEEECC-Ch---------HHHHHHHHhccCCCEEEEEe
Confidence 1123699998632 21 12445567899999987543
|
| >3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A | Back alignment and structure |
|---|
Probab=89.73 E-value=0.59 Score=42.46 Aligned_cols=90 Identities=12% Similarity=0.164 Sum_probs=52.4
Q ss_pred ChHhHHHHHHHHHhcCCCCCCCEEEEECCcc-cH-HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcc
Q 016351 59 DRVRMDAYFNSIFQNKHHFQGKTVLDVGTGS-GI-LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGS 135 (391)
Q Consensus 59 d~~r~~~~~~~i~~~~~~~~~~~VLDlGcGt-G~-l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d 135 (391)
+......+.+.+.+.....++++||-+|+|- |. ....+++.|+++|+.++.+ +.++...+.+......-.+... +
T Consensus 107 ~NTD~~G~~~~l~~~~~~l~~k~vlVlGaGG~g~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~~~~~~~i~~~--~ 184 (283)
T 3jyo_A 107 HNTDVSGFGRGMEEGLPNAKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVVGV--D 184 (283)
T ss_dssp ECHHHHHHHHHHHHHCTTCCCSEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHHTSCCEEEE--C
T ss_pred ecCCHHHHHHHHHHhCcCcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhhcCCceEEEc--C
Confidence 3445566777777655556789999999973 11 3345666788789999988 5544333333332211113332 2
Q ss_pred cccCCC-CCcccEEEE
Q 016351 136 VEDIVL-PEKVDVIIS 150 (391)
Q Consensus 136 ~~~~~~-~~~~D~Ivs 150 (391)
..++.. ...+|+||+
T Consensus 185 ~~~l~~~l~~~DiVIn 200 (283)
T 3jyo_A 185 ARGIEDVIAAADGVVN 200 (283)
T ss_dssp STTHHHHHHHSSEEEE
T ss_pred HHHHHHHHhcCCEEEE
Confidence 222211 146899997
|
| >3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=89.35 E-value=0.19 Score=46.99 Aligned_cols=91 Identities=26% Similarity=0.284 Sum_probs=56.1
Q ss_pred hcCCCCCCCEEEEECC-c-ccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccC-------C
Q 016351 72 QNKHHFQGKTVLDVGT-G-SGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDI-------V 140 (391)
Q Consensus 72 ~~~~~~~~~~VLDlGc-G-tG~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~-------~ 140 (391)
+.....++.+||-+|+ | .|.++..+++. |+ +|+++ .+ +-++.+++ .|.. .+. +-.++ .
T Consensus 144 ~~~~~~~g~~VlV~Ga~g~iG~~~~q~a~~~Ga-~Vi~~-~~~~~~~~~~~----lGa~----~i~-~~~~~~~~~~~~~ 212 (343)
T 3gaz_A 144 DRAQVQDGQTVLIQGGGGGVGHVAIQIALARGA-RVFAT-ARGSDLEYVRD----LGAT----PID-ASREPEDYAAEHT 212 (343)
T ss_dssp TTTCCCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEE-ECHHHHHHHHH----HTSE----EEE-TTSCHHHHHHHHH
T ss_pred HhcCCCCCCEEEEecCCCHHHHHHHHHHHHCCC-EEEEE-eCHHHHHHHHH----cCCC----Eec-cCCCHHHHHHHHh
Confidence 3445567899999994 4 37777777776 77 79999 66 55555543 3432 132 22211 1
Q ss_pred CCCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 141 LPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 141 ~~~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
....+|+|+-.. + . ..+....+.|+++|.++..
T Consensus 213 ~~~g~D~vid~~-g----~-----~~~~~~~~~l~~~G~iv~~ 245 (343)
T 3gaz_A 213 AGQGFDLVYDTL-G----G-----PVLDASFSAVKRFGHVVSC 245 (343)
T ss_dssp TTSCEEEEEESS-C----T-----HHHHHHHHHEEEEEEEEES
T ss_pred cCCCceEEEECC-C----c-----HHHHHHHHHHhcCCeEEEE
Confidence 124799988522 2 1 2355566789999998854
|
| >2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=89.30 E-value=0.21 Score=46.55 Aligned_cols=91 Identities=16% Similarity=0.173 Sum_probs=57.3
Q ss_pred CCCCCCEEEEECCcc-cHHHHHHHHc---CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEc----c-cccCCCCCc
Q 016351 75 HHFQGKTVLDVGTGS-GILAIWSAQA---GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEG----S-VEDIVLPEK 144 (391)
Q Consensus 75 ~~~~~~~VLDlGcGt-G~l~~~~a~~---g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~----d-~~~~~~~~~ 144 (391)
.. ++.+||-+|+|. |.++..+|++ |+ +|++++.+ +.++.+++ .|.. .++.. + ...+.....
T Consensus 168 ~~-~g~~VlV~GaG~vG~~aiqlak~~~~Ga-~Vi~~~~~~~~~~~~~~----lGa~---~vi~~~~~~~~~~~~~~g~g 238 (344)
T 2h6e_A 168 KF-AEPVVIVNGIGGLAVYTIQILKALMKNI-TIVGISRSKKHRDFALE----LGAD---YVSEMKDAESLINKLTDGLG 238 (344)
T ss_dssp TC-SSCEEEEECCSHHHHHHHHHHHHHCTTC-EEEEECSCHHHHHHHHH----HTCS---EEECHHHHHHHHHHHHTTCC
T ss_pred CC-CCCEEEEECCCHHHHHHHHHHHHhcCCC-EEEEEeCCHHHHHHHHH----hCCC---EEeccccchHHHHHhhcCCC
Confidence 45 789999999975 7777777764 66 79999988 66666654 3432 22221 1 111211237
Q ss_pred ccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 145 VDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 145 ~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
+|+|+... + . ...+....++|+++|.++..
T Consensus 239 ~D~vid~~-g----~----~~~~~~~~~~l~~~G~iv~~ 268 (344)
T 2h6e_A 239 ASIAIDLV-G----T----EETTYNLGKLLAQEGAIILV 268 (344)
T ss_dssp EEEEEESS-C----C----HHHHHHHHHHEEEEEEEEEC
T ss_pred ccEEEECC-C----C----hHHHHHHHHHhhcCCEEEEe
Confidence 99998522 1 1 22456667889999998754
|
| >1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=89.24 E-value=0.14 Score=47.44 Aligned_cols=93 Identities=23% Similarity=0.191 Sum_probs=55.4
Q ss_pred cCCCCCCCEEEEECC--cccHHHHHHHH-cCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccC-------CC
Q 016351 73 NKHHFQGKTVLDVGT--GSGILAIWSAQ-AGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDI-------VL 141 (391)
Q Consensus 73 ~~~~~~~~~VLDlGc--GtG~l~~~~a~-~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~-------~~ 141 (391)
.....++++||..|+ |.|.....+++ .|+ +|++++.+ +.++.+++ .+.. .++..+-.++ ..
T Consensus 135 ~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~-~V~~~~~~~~~~~~~~~----~g~~---~~~~~~~~~~~~~~~~~~~ 206 (327)
T 1qor_A 135 TYEIKPDEQFLFHAAAGGVGLIACQWAKALGA-KLIGTVGTAQKAQSALK----AGAW---QVINYREEDLVERLKEITG 206 (327)
T ss_dssp TSCCCTTCEEEESSTTBHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHH----HTCS---EEEETTTSCHHHHHHHHTT
T ss_pred hhCCCCCCEEEEECCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHH----cCCC---EEEECCCccHHHHHHHHhC
Confidence 344567899999994 34666555555 488 89999998 66666654 2322 1222111111 11
Q ss_pred CCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 142 PEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 142 ~~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
...+|+++... + . ..+....+.|+++|.++..
T Consensus 207 ~~~~D~vi~~~-g-----~----~~~~~~~~~l~~~G~iv~~ 238 (327)
T 1qor_A 207 GKKVRVVYDSV-G-----R----DTWERSLDCLQRRGLMVSF 238 (327)
T ss_dssp TCCEEEEEECS-C-----G----GGHHHHHHTEEEEEEEEEC
T ss_pred CCCceEEEECC-c-----h----HHHHHHHHHhcCCCEEEEE
Confidence 24699998632 2 1 1245566789999988744
|
| >3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A* | Back alignment and structure |
|---|
Probab=89.21 E-value=0.72 Score=42.38 Aligned_cols=86 Identities=16% Similarity=0.169 Sum_probs=54.3
Q ss_pred CCEEEEECC-c-ccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEc-ccccC-C-CCCcccEEEEc
Q 016351 79 GKTVLDVGT-G-SGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEG-SVEDI-V-LPEKVDVIISE 151 (391)
Q Consensus 79 ~~~VLDlGc-G-tG~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~-d~~~~-~-~~~~~D~Ivse 151 (391)
+. ||-.|+ | .|.++..+|++ |+ +|++++.+ +.++.+++ .|.. .++.. +...+ . ..+.+|+++-.
T Consensus 148 g~-VlV~Ga~G~vG~~aiqla~~~Ga-~Vi~~~~~~~~~~~~~~----lGa~---~vi~~~~~~~~~~~~~~~~d~v~d~ 218 (324)
T 3nx4_A 148 GE-VVVTGASGGVGSTAVALLHKLGY-QVAAVSGRESTHGYLKS----LGAN---RILSRDEFAESRPLEKQLWAGAIDT 218 (324)
T ss_dssp CC-EEESSTTSHHHHHHHHHHHHTTC-CEEEEESCGGGHHHHHH----HTCS---EEEEGGGSSCCCSSCCCCEEEEEES
T ss_pred Ce-EEEECCCcHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHh----cCCC---EEEecCCHHHHHhhcCCCccEEEEC
Confidence 35 999997 4 48888888876 78 79999988 66666654 3432 22221 11111 1 12578988742
Q ss_pred cccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 152 WMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 152 ~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
.+. ..+....+.|+++|+++..
T Consensus 219 -~g~---------~~~~~~~~~l~~~G~iv~~ 240 (324)
T 3nx4_A 219 -VGD---------KVLAKVLAQMNYGGCVAAC 240 (324)
T ss_dssp -SCH---------HHHHHHHHTEEEEEEEEEC
T ss_pred -CCc---------HHHHHHHHHHhcCCEEEEE
Confidence 111 1466677889999998854
|
| >2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* | Back alignment and structure |
|---|
Probab=89.01 E-value=0.68 Score=43.48 Aligned_cols=92 Identities=21% Similarity=0.224 Sum_probs=57.2
Q ss_pred CCCCCCCEEEEEC-Cc-ccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccC------CCCC
Q 016351 74 KHHFQGKTVLDVG-TG-SGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDI------VLPE 143 (391)
Q Consensus 74 ~~~~~~~~VLDlG-cG-tG~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~------~~~~ 143 (391)
....++++||-+| +| .|.++..+++. |+ +|++++.+ +.++.+++ .|.. .++..+-.++ ...+
T Consensus 159 ~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~----~Ga~---~~~~~~~~~~~~~~~~~~~~ 230 (362)
T 2c0c_A 159 GGLSEGKKVLVTAAAGGTGQFAMQLSKKAKC-HVIGTCSSDEKSAFLKS----LGCD---RPINYKTEPVGTVLKQEYPE 230 (362)
T ss_dssp TCCCTTCEEEETTTTBTTHHHHHHHHHHTTC-EEEEEESSHHHHHHHHH----TTCS---EEEETTTSCHHHHHHHHCTT
T ss_pred cCCCCCCEEEEeCCCcHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHH----cCCc---EEEecCChhHHHHHHHhcCC
Confidence 3456789999999 34 47777777775 77 79999998 66666554 4432 2222211111 0124
Q ss_pred cccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 144 KVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 144 ~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
.+|+|+... + . ..+....+.|+++|.++..
T Consensus 231 g~D~vid~~-g----~-----~~~~~~~~~l~~~G~iv~~ 260 (362)
T 2c0c_A 231 GVDVVYESV-G----G-----AMFDLAVDALATKGRLIVI 260 (362)
T ss_dssp CEEEEEECS-C----T-----HHHHHHHHHEEEEEEEEEC
T ss_pred CCCEEEECC-C----H-----HHHHHHHHHHhcCCEEEEE
Confidence 699998532 2 1 2455666789999988743
|
| >3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=88.96 E-value=2 Score=37.52 Aligned_cols=73 Identities=19% Similarity=0.253 Sum_probs=52.8
Q ss_pred CCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC-----------C
Q 016351 77 FQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV-----------L 141 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~---l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~-----------~ 141 (391)
.+++++|-.|++.|+ ++..+++.|+ +|++++.+ ..++...+.++..+. ++.++..|+.+.. .
T Consensus 3 l~~k~vlITGas~gIG~~~a~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~~ 79 (247)
T 3lyl_A 3 LNEKVALVTGASRGIGFEVAHALASKGA-TVVGTATSQASAEKFENSMKEKGF--KARGLVLNISDIESIQNFFAEIKAE 79 (247)
T ss_dssp TTTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHTTC--CEEEEECCTTCHHHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCC--ceEEEEecCCCHHHHHHHHHHHHHH
Confidence 356889999988764 4566777788 79999998 666666666665543 4899999987742 1
Q ss_pred CCcccEEEEcc
Q 016351 142 PEKVDVIISEW 152 (391)
Q Consensus 142 ~~~~D~Ivse~ 152 (391)
.+++|++|...
T Consensus 80 ~~~id~li~~A 90 (247)
T 3lyl_A 80 NLAIDILVNNA 90 (247)
T ss_dssp TCCCSEEEECC
T ss_pred cCCCCEEEECC
Confidence 14689999743
|
| >1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A* | Back alignment and structure |
|---|
Probab=88.87 E-value=0.83 Score=42.52 Aligned_cols=93 Identities=23% Similarity=0.284 Sum_probs=56.7
Q ss_pred CCCCCCCEEEEECCcc--cHHHHHHHH-c-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEc-c------cccCCC
Q 016351 74 KHHFQGKTVLDVGTGS--GILAIWSAQ-A-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEG-S------VEDIVL 141 (391)
Q Consensus 74 ~~~~~~~~VLDlGcGt--G~l~~~~a~-~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~-d------~~~~~~ 141 (391)
....++++||..|+|+ |..+..+++ . |+ +|+++|.+ +.++.+++ .|.. .++.. + +.++..
T Consensus 166 ~~~~~g~~vlV~Gagg~iG~~~~~~a~~~~Ga-~Vi~~~~~~~~~~~~~~----~g~~---~~~~~~~~~~~~~~~~~~~ 237 (347)
T 1jvb_A 166 ASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGA-TIIGVDVREEAVEAAKR----AGAD---YVINASMQDPLAEIRRITE 237 (347)
T ss_dssp TTCCTTCEEEEETTTSHHHHHHHHHHHHHTCC-EEEEEESSHHHHHHHHH----HTCS---EEEETTTSCHHHHHHHHTT
T ss_pred cCCCCCCEEEEECCCccHHHHHHHHHHHcCCC-eEEEEcCCHHHHHHHHH----hCCC---EEecCCCccHHHHHHHHhc
Confidence 3456789999999984 555555544 4 77 79999998 66666643 2322 22221 1 111111
Q ss_pred CCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 142 PEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 142 ~~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
.+.+|+++... +. ...+....++|+++|.++..
T Consensus 238 ~~~~d~vi~~~-g~--------~~~~~~~~~~l~~~G~iv~~ 270 (347)
T 1jvb_A 238 SKGVDAVIDLN-NS--------EKTLSVYPKALAKQGKYVMV 270 (347)
T ss_dssp TSCEEEEEESC-CC--------HHHHTTGGGGEEEEEEEEEC
T ss_pred CCCceEEEECC-CC--------HHHHHHHHHHHhcCCEEEEE
Confidence 04799998632 11 23466677899999998753
|
| >1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A | Back alignment and structure |
|---|
Probab=88.71 E-value=0.36 Score=45.50 Aligned_cols=98 Identities=18% Similarity=0.127 Sum_probs=53.0
Q ss_pred CCCCEEEEECCcc-cHHHHHHHH-cCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC-CCcccEEEEcc
Q 016351 77 FQGKTVLDVGTGS-GILAIWSAQ-AGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL-PEKVDVIISEW 152 (391)
Q Consensus 77 ~~~~~VLDlGcGt-G~l~~~~a~-~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~-~~~~D~Ivse~ 152 (391)
.++++||-+|+|. |.....+++ .|+ +|+++|.+ +.++.+++..... +..+..+..++.. -..+|+||.-.
T Consensus 165 l~~~~VlViGaGgvG~~aa~~a~~~Ga-~V~v~dr~~~r~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~DvVI~~~ 238 (361)
T 1pjc_A 165 VKPGKVVILGGGVVGTEAAKMAVGLGA-QVQIFDINVERLSYLETLFGSR-----VELLYSNSAEIETAVAEADLLIGAV 238 (361)
T ss_dssp BCCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHGGG-----SEEEECCHHHHHHHHHTCSEEEECC
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHhhCce-----eEeeeCCHHHHHHHHcCCCEEEECC
Confidence 3458999999975 544444444 488 89999999 6666665543221 3333222222210 13689998632
Q ss_pred ccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 153 MGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 153 ~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
......... .+.....+.++++|+++..
T Consensus 239 ~~~~~~~~~---li~~~~~~~~~~g~~ivdv 266 (361)
T 1pjc_A 239 LVPGRRAPI---LVPASLVEQMRTGSVIVDV 266 (361)
T ss_dssp CCTTSSCCC---CBCHHHHTTSCTTCEEEET
T ss_pred CcCCCCCCe---ecCHHHHhhCCCCCEEEEE
Confidence 111100000 0122334678999988744
|
| >3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A | Back alignment and structure |
|---|
Probab=88.43 E-value=0.48 Score=46.11 Aligned_cols=92 Identities=23% Similarity=0.260 Sum_probs=57.4
Q ss_pred CCCCCCCEEEEECC-c-ccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccc------------
Q 016351 74 KHHFQGKTVLDVGT-G-SGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVE------------ 137 (391)
Q Consensus 74 ~~~~~~~~VLDlGc-G-tG~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~------------ 137 (391)
....++.+||-+|+ | .|.++..+|++ |+ +|++++.+ .-++.+++ .|.. .++...-.
T Consensus 224 ~~~~~g~~VlV~GasG~vG~~avqlak~~Ga-~vi~~~~~~~~~~~~~~----lGa~---~vi~~~~~d~~~~~~~~~~~ 295 (456)
T 3krt_A 224 AGMKQGDNVLIWGASGGLGSYATQFALAGGA-NPICVVSSPQKAEICRA----MGAE---AIIDRNAEGYRFWKDENTQD 295 (456)
T ss_dssp TCCCTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHH----HTCC---EEEETTTTTCCSEEETTEEC
T ss_pred cCCCCCCEEEEECCCCHHHHHHHHHHHHcCC-eEEEEECCHHHHHHHHh----hCCc---EEEecCcCcccccccccccc
Confidence 34567899999997 4 37888888876 77 78898887 66666654 3432 22221111
Q ss_pred ------------cCCCCCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 138 ------------DIVLPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 138 ------------~~~~~~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
++.....+|+|+-.. + . ..+....++|+++|.++..
T Consensus 296 ~~~~~~~~~~i~~~t~g~g~Dvvid~~-G-------~--~~~~~~~~~l~~~G~iv~~ 343 (456)
T 3krt_A 296 PKEWKRFGKRIRELTGGEDIDIVFEHP-G-------R--ETFGASVFVTRKGGTITTC 343 (456)
T ss_dssp HHHHHHHHHHHHHHHTSCCEEEEEECS-C-------H--HHHHHHHHHEEEEEEEEES
T ss_pred hHHHHHHHHHHHHHhCCCCCcEEEEcC-C-------c--hhHHHHHHHhhCCcEEEEE
Confidence 111124799988521 1 1 2355666789999998854
|
| >3iei_A Leucine carboxyl methyltransferase 1; LCMT-1, S-adenosyl-L-methionine; HET: SAH MES; 1.90A {Homo sapiens} PDB: 3p71_T* 3mnt_A* 3o7w_A* | Back alignment and structure |
|---|
Probab=88.37 E-value=3.7 Score=38.05 Aligned_cols=119 Identities=11% Similarity=0.112 Sum_probs=72.8
Q ss_pred HhHHHHHHHHHhcCCCC-CCCEEEEECCcccHHHHHHHHcC--CCeEEEEechHHHHHHHHHHHHcC-------------
Q 016351 61 VRMDAYFNSIFQNKHHF-QGKTVLDVGTGSGILAIWSAQAG--ARKVYAVEATKMSDHARTLVKANN------------- 124 (391)
Q Consensus 61 ~r~~~~~~~i~~~~~~~-~~~~VLDlGcGtG~l~~~~a~~g--~~~V~avD~s~~~~~a~~~~~~~~------------- 124 (391)
.|...+.+.+.+.+... +.+.|+.||||.=.....+...+ ..+++=||.-++++.=++.+...+
T Consensus 72 ~Rt~~iD~~v~~fl~~~~~~~QVV~LGaGlDTr~~RL~~~~~~~~~~~EVD~P~vi~~K~~~l~~~~~l~~~lg~~~~~~ 151 (334)
T 3iei_A 72 ARVHGVSQLIKAFLRKTECHCQIVNLGAGMDTTFWRLKDEDLLSSKYFEVDFPMIVTRKLHSIKCKPPLSSPILELHSED 151 (334)
T ss_dssp HHHHHHHHHHHHHHHHTTTCSEEEEETCTTCCHHHHHHHTTCCCSEEEEEECHHHHHHHHHHHHHCHHHHHHHHHHSSSS
T ss_pred HHHHHHHHHHHHHHHhCCCCCEEEEeCCCcCchHHHhcCCCCCCCeEEECCcHHHHHHHHHHHhhchhhhhhhccccccc
Confidence 34555555555444332 45789999999877777776542 225666666555544344444311
Q ss_pred ---------CCCcEEEEEcccccCC----------CC-CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEE
Q 016351 125 ---------LQDVVEVIEGSVEDIV----------LP-EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMY 181 (391)
Q Consensus 125 ---------~~~~v~~i~~d~~~~~----------~~-~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii 181 (391)
-..+..++..|+++.. +. ...-++++|.+...+..+ ....+++.+.... |+|.++
T Consensus 152 ~~~~~~~~l~s~~y~~v~~DL~d~~~l~~~L~~~g~d~~~Ptl~iaEGvL~YL~~~-~~~~ll~~ia~~f-~~~~~i 226 (334)
T 3iei_A 152 TLQMDGHILDSKRYAVIGADLRDLSELEEKLKKCNMNTQLPTLLIAECVLVYMTPE-QSANLLKWAANSF-ERAMFI 226 (334)
T ss_dssp SCBCCTTEEECSSEEEEECCTTCHHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHH-HHHHHHHHHHHHC-SSEEEE
T ss_pred ccccccccCCCCceEEEccccccchhHHHHHHhcCCCCCCCEEEEEchhhhCCCHH-HHHHHHHHHHHhC-CCceEE
Confidence 1356889999987731 22 456688889877776655 4667788777654 455554
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=88.36 E-value=1.9 Score=34.18 Aligned_cols=62 Identities=21% Similarity=0.224 Sum_probs=42.6
Q ss_pred CEEEEECCcc-cH-HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC----CC-CcccEEEE
Q 016351 80 KTVLDVGTGS-GI-LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV----LP-EKVDVIIS 150 (391)
Q Consensus 80 ~~VLDlGcGt-G~-l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~----~~-~~~D~Ivs 150 (391)
.+|+-+|||. |. ++..+.+.|. .|+++|.+ +.++.+++ .+ +.++.+|..+.. .. ..+|+|++
T Consensus 8 ~~viIiG~G~~G~~la~~L~~~g~-~v~vid~~~~~~~~~~~----~g----~~~i~gd~~~~~~l~~a~i~~ad~vi~ 77 (140)
T 3fwz_A 8 NHALLVGYGRVGSLLGEKLLASDI-PLVVIETSRTRVDELRE----RG----VRAVLGNAANEEIMQLAHLECAKWLIL 77 (140)
T ss_dssp SCEEEECCSHHHHHHHHHHHHTTC-CEEEEESCHHHHHHHHH----TT----CEEEESCTTSHHHHHHTTGGGCSEEEE
T ss_pred CCEEEECcCHHHHHHHHHHHHCCC-CEEEEECCHHHHHHHHH----cC----CCEEECCCCCHHHHHhcCcccCCEEEE
Confidence 5799999986 43 3445555677 69999999 66655443 23 678889876642 12 57898886
|
| >1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A | Back alignment and structure |
|---|
Probab=88.29 E-value=1.1 Score=41.84 Aligned_cols=101 Identities=18% Similarity=0.197 Sum_probs=55.2
Q ss_pred HHhcCCCCCCCEEEEECC-c-ccHHHHHHHHc-CCCeEEEEechHHHHHHHHHHHHcCCCCcEEEEEc------ccccCC
Q 016351 70 IFQNKHHFQGKTVLDVGT-G-SGILAIWSAQA-GARKVYAVEATKMSDHARTLVKANNLQDVVEVIEG------SVEDIV 140 (391)
Q Consensus 70 i~~~~~~~~~~~VLDlGc-G-tG~l~~~~a~~-g~~~V~avD~s~~~~~a~~~~~~~~~~~~v~~i~~------d~~~~~ 140 (391)
+.......++.+||-+|+ | .|.++..+|+. |++.|..++.++..+..++.++..|.. .++.. ++.++.
T Consensus 159 l~~~~~~~~g~~VlV~Ga~G~vG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~~~~lGa~---~vi~~~~~~~~~~~~~~ 235 (357)
T 1zsy_A 159 LMDFEQLQPGDSVIQNASNSGVGQAVIQIAAALGLRTINVVRDRPDIQKLSDRLKSLGAE---HVITEEELRRPEMKNFF 235 (357)
T ss_dssp HHHSSCCCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEECCCSCHHHHHHHHHHTTCS---EEEEHHHHHSGGGGGTT
T ss_pred HHHHhccCCCCEEEEeCCcCHHHHHHHHHHHHcCCEEEEEecCccchHHHHHHHHhcCCc---EEEecCcchHHHHHHHH
Confidence 333344567899999997 3 48888888886 885455555542111112334455643 22321 122221
Q ss_pred CC-CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 141 LP-EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 141 ~~-~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
.. ..+|+|+-- .+ . ... ....++|+++|.++..
T Consensus 236 ~~~~~~Dvvid~-~g----~----~~~-~~~~~~l~~~G~iv~~ 269 (357)
T 1zsy_A 236 KDMPQPRLALNC-VG----G----KSS-TELLRQLARGGTMVTY 269 (357)
T ss_dssp SSSCCCSEEEES-SC----H----HHH-HHHHTTSCTTCEEEEC
T ss_pred hCCCCceEEEEC-CC----c----HHH-HHHHHhhCCCCEEEEE
Confidence 11 248998842 11 1 112 2356889999998754
|
| >1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A | Back alignment and structure |
|---|
Probab=88.00 E-value=0.85 Score=42.15 Aligned_cols=47 Identities=28% Similarity=0.369 Sum_probs=37.4
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCCCeEEEEechH----HHHHHHHHHHHcC
Q 016351 77 FQGKTVLDVGTGSGILAIWSAQAGARKVYAVEATK----MSDHARTLVKANN 124 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s~----~~~~a~~~~~~~~ 124 (391)
.++..|||--||+|..+..+.+.|. +.+|+|+++ .++.++++++..+
T Consensus 241 ~~~~~vlDpF~GsGtt~~aa~~~~r-~~ig~e~~~~~~~~~~~~~~Rl~~~~ 291 (319)
T 1eg2_A 241 HPGSTVLDFFAGSGVTARVAIQEGR-NSICTDAAPVFKEYYQKQLTFLQDDG 291 (319)
T ss_dssp CTTCEEEETTCTTCHHHHHHHHHTC-EEEEEESSTHHHHHHHHHHHHC----
T ss_pred CCCCEEEecCCCCCHHHHHHHHcCC-cEEEEECCccHHHHHHHHHHHHHHcc
Confidence 5789999999999999999999986 799999994 5677777766543
|
| >3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=87.65 E-value=2.7 Score=37.15 Aligned_cols=74 Identities=22% Similarity=0.247 Sum_probs=54.6
Q ss_pred CCCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC----------
Q 016351 76 HFQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL---------- 141 (391)
Q Consensus 76 ~~~~~~VLDlGcGtG~---l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~---------- 141 (391)
.++++++|-.|++.|+ ++..+++.|+ +|+.++.+ +.++.+.+.+...+ .++.++..|+.+...
T Consensus 8 ~l~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~ 84 (264)
T 3ucx_A 8 LLTDKVVVISGVGPALGTTLARRCAEQGA-DLVLAARTVERLEDVAKQVTDTG--RRALSVGTDITDDAQVAHLVDETMK 84 (264)
T ss_dssp TTTTCEEEEESCCTTHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CcCCcEEEEECCCcHHHHHHHHHHHHCcC-EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHH
Confidence 3567899999998875 4666777888 79999998 66666655555554 348999999887521
Q ss_pred -CCcccEEEEcc
Q 016351 142 -PEKVDVIISEW 152 (391)
Q Consensus 142 -~~~~D~Ivse~ 152 (391)
-+++|++|.+.
T Consensus 85 ~~g~id~lv~nA 96 (264)
T 3ucx_A 85 AYGRVDVVINNA 96 (264)
T ss_dssp HTSCCSEEEECC
T ss_pred HcCCCcEEEECC
Confidence 14789999854
|
| >2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens} | Back alignment and structure |
|---|
Probab=87.57 E-value=1 Score=42.43 Aligned_cols=92 Identities=22% Similarity=0.183 Sum_probs=54.2
Q ss_pred CCCCCEEEEEC-Ccc-cHHHHHHHHc-CCCeEEEEechHHHHHHHHHHHHcCCCCcEEEEEccccc----CCCCCcccEE
Q 016351 76 HFQGKTVLDVG-TGS-GILAIWSAQA-GARKVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVED----IVLPEKVDVI 148 (391)
Q Consensus 76 ~~~~~~VLDlG-cGt-G~l~~~~a~~-g~~~V~avD~s~~~~~a~~~~~~~~~~~~v~~i~~d~~~----~~~~~~~D~I 148 (391)
..++++||-.| +|. |.++..+++. |+ +|++++..+.++.+ +..|.. .++..+-.+ +.....+|+|
T Consensus 181 ~~~g~~VlV~Ga~G~vG~~~~qla~~~Ga-~Vi~~~~~~~~~~~----~~lGa~---~v~~~~~~~~~~~~~~~~g~D~v 252 (375)
T 2vn8_A 181 NCTGKRVLILGASGGVGTFAIQVMKAWDA-HVTAVCSQDASELV----RKLGAD---DVIDYKSGSVEEQLKSLKPFDFI 252 (375)
T ss_dssp TCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECGGGHHHH----HHTTCS---EEEETTSSCHHHHHHTSCCBSEE
T ss_pred cCCCCEEEEECCCCHHHHHHHHHHHhCCC-EEEEEeChHHHHHH----HHcCCC---EEEECCchHHHHHHhhcCCCCEE
Confidence 45789999999 453 7777777775 77 79999843544444 344543 222211111 1111469999
Q ss_pred EEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 149 ISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 149 vse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
+-.. +. ....+....+.|+++|.++..
T Consensus 253 id~~-g~-------~~~~~~~~~~~l~~~G~iv~~ 279 (375)
T 2vn8_A 253 LDNV-GG-------STETWAPDFLKKWSGATYVTL 279 (375)
T ss_dssp EESS-CT-------THHHHGGGGBCSSSCCEEEES
T ss_pred EECC-CC-------hhhhhHHHHHhhcCCcEEEEe
Confidence 8522 11 112345667889999998754
|
| >3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A* | Back alignment and structure |
|---|
Probab=87.50 E-value=0.69 Score=49.38 Aligned_cols=68 Identities=24% Similarity=0.207 Sum_probs=48.5
Q ss_pred CCEEEEECCcccHHHHHHHHcCC-CeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccC---------------CC
Q 016351 79 GKTVLDVGTGSGILAIWSAQAGA-RKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDI---------------VL 141 (391)
Q Consensus 79 ~~~VLDlGcGtG~l~~~~a~~g~-~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~---------------~~ 141 (391)
..+++||-||.|.+++.+.++|. ..|.|+|++ ..++..+.+. ++ ..++.+|+.++ .+
T Consensus 540 ~l~~iDLFaG~GGlslGl~~AG~~~vv~avEid~~A~~ty~~N~-----p~-~~~~~~DI~~l~~~~~~~di~~~~~~~l 613 (1002)
T 3swr_A 540 KLRTLDVFSGCGGLSEGFHQAGISDTLWAIEMWDPAAQAFRLNN-----PG-STVFTEDCNILLKLVMAGETTNSRGQRL 613 (1002)
T ss_dssp CEEEEEESCTTSHHHHHHHHHTSEEEEEEECSSHHHHHHHHHHC-----TT-SEEECSCHHHHHHHHHHTCSBCTTCCBC
T ss_pred CCeEEEeccCccHHHHHHHHCCCCceEEEEECCHHHHHHHHHhC-----CC-CccccccHHHHhhhccchhhhhhhhhhc
Confidence 35899999999999999999997 678899999 5555444432 12 46676775432 12
Q ss_pred C--CcccEEEEcc
Q 016351 142 P--EKVDVIISEW 152 (391)
Q Consensus 142 ~--~~~D~Ivse~ 152 (391)
+ +.+|+|+.-+
T Consensus 614 p~~~~vDll~GGp 626 (1002)
T 3swr_A 614 PQKGDVEMLCGGP 626 (1002)
T ss_dssp CCTTTCSEEEECC
T ss_pred ccCCCeeEEEEcC
Confidence 2 5799999744
|
| >3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=87.29 E-value=2.7 Score=38.13 Aligned_cols=74 Identities=22% Similarity=0.250 Sum_probs=54.4
Q ss_pred CCCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC----------
Q 016351 76 HFQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL---------- 141 (391)
Q Consensus 76 ~~~~~~VLDlGcGtG~---l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~---------- 141 (391)
..++++||-.|++.|+ ++..+++.|+ +|++++.+ +.++.+.+.++..+. ++.++..|+.+...
T Consensus 28 ~l~gk~vlVTGas~gIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~--~~~~~~~Dv~d~~~v~~~~~~~~~ 104 (301)
T 3tjr_A 28 GFDGRAAVVTGGASGIGLATATEFARRGA-RLVLSDVDQPALEQAVNGLRGQGF--DAHGVVCDVRHLDEMVRLADEAFR 104 (301)
T ss_dssp CSTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCTTCHHHHHHHHHHHHH
T ss_pred ccCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCC--ceEEEEccCCCHHHHHHHHHHHHH
Confidence 4578899999998874 4566777788 79999998 766666665655543 48999999887521
Q ss_pred -CCcccEEEEcc
Q 016351 142 -PEKVDVIISEW 152 (391)
Q Consensus 142 -~~~~D~Ivse~ 152 (391)
-+++|++|.+.
T Consensus 105 ~~g~id~lvnnA 116 (301)
T 3tjr_A 105 LLGGVDVVFSNA 116 (301)
T ss_dssp HHSSCSEEEECC
T ss_pred hCCCCCEEEECC
Confidence 14789999853
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=87.25 E-value=0.51 Score=43.69 Aligned_cols=60 Identities=18% Similarity=0.257 Sum_probs=42.4
Q ss_pred CcEEEEEcccccC-C-CC-CcccEEEEccccccccC------------cchHHHHHHHHhccccCCeEEEccccee
Q 016351 127 DVVEVIEGSVEDI-V-LP-EKVDVIISEWMGYFLLR------------ESMFDSVICARDRWLKPTGVMYPSHARM 187 (391)
Q Consensus 127 ~~v~~i~~d~~~~-~-~~-~~~D~Ivse~~~~~~~~------------e~~l~~~l~~~~~~L~~gG~ii~~~~~~ 187 (391)
+.+.++++|..+. . ++ +++|+|++++. |.... ...+...+..+.++|+|||.++......
T Consensus 13 ~~~~ii~gD~~~~l~~l~~~svDlI~tDPP-Y~~~~~~~y~~~~~~~~~~~l~~~l~~~~rvLk~~G~i~i~~~d~ 87 (323)
T 1boo_A 13 SNGSMYIGDSLELLESFPEESISLVMTSPP-FALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVDFGGA 87 (323)
T ss_dssp SSEEEEESCHHHHGGGSCSSCEEEEEECCC-CSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCC
T ss_pred CCceEEeCcHHHHHhhCCCCCeeEEEECCC-CCCCcccccCCcCHHHHHHHHHHHHHHHHHHCcCCcEEEEEECCE
Confidence 3488999998763 2 33 78999999884 32211 1245677888899999999988765443
|
| >3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444} | Back alignment and structure |
|---|
Probab=87.18 E-value=2.2 Score=39.11 Aligned_cols=76 Identities=20% Similarity=0.188 Sum_probs=54.9
Q ss_pred CCCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC----------
Q 016351 76 HFQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL---------- 141 (391)
Q Consensus 76 ~~~~~~VLDlGcGtG~---l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~---------- 141 (391)
...+++||-.|++.|+ ++..+++.|+ +|++++.+ +.++.+.+.+...+...++.++..|+.+..-
T Consensus 5 ~l~~k~vlVTGas~gIG~~la~~l~~~G~-~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~ 83 (319)
T 3ioy_A 5 DFAGRTAFVTGGANGVGIGLVRQLLNQGC-KVAIADIRQDSIDKALATLEAEGSGPEVMGVQLDVASREGFKMAADEVEA 83 (319)
T ss_dssp CCTTCEEEEETTTSTHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEcCCchHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCCeEEEEECCCCCHHHHHHHHHHHHH
Confidence 3567899999998875 4566777788 79999999 6666666655555443359999999877420
Q ss_pred -CCcccEEEEcc
Q 016351 142 -PEKVDVIISEW 152 (391)
Q Consensus 142 -~~~~D~Ivse~ 152 (391)
-+.+|++|.+.
T Consensus 84 ~~g~id~lv~nA 95 (319)
T 3ioy_A 84 RFGPVSILCNNA 95 (319)
T ss_dssp HTCCEEEEEECC
T ss_pred hCCCCCEEEECC
Confidence 14789999854
|
| >1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A | Back alignment and structure |
|---|
Probab=87.12 E-value=0.98 Score=42.27 Aligned_cols=100 Identities=15% Similarity=0.108 Sum_probs=55.8
Q ss_pred HHhcCCCCCC-CEEEEECC-c-ccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEccc---ccC--
Q 016351 70 IFQNKHHFQG-KTVLDVGT-G-SGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSV---EDI-- 139 (391)
Q Consensus 70 i~~~~~~~~~-~~VLDlGc-G-tG~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~---~~~-- 139 (391)
+.......++ .+||-.|+ | .|.++..+|+. |+ +|+++..+ +.+...++.++..|.. .++..+- .++
T Consensus 158 l~~~~~~~~g~~~VlV~Ga~G~vG~~aiqlak~~Ga-~vi~~~~~~~~~~~~~~~~~~lGa~---~vi~~~~~~~~~~~~ 233 (364)
T 1gu7_A 158 LTHYVKLTPGKDWFIQNGGTSAVGKYASQIGKLLNF-NSISVIRDRPNLDEVVASLKELGAT---QVITEDQNNSREFGP 233 (364)
T ss_dssp HHSSSCCCTTTCEEEESCTTSHHHHHHHHHHHHHTC-EEEEEECCCTTHHHHHHHHHHHTCS---EEEEHHHHHCGGGHH
T ss_pred HHHhhccCCCCcEEEECCCCcHHHHHHHHHHHHCCC-EEEEEecCccccHHHHHHHHhcCCe---EEEecCccchHHHHH
Confidence 3333345678 99999997 4 37788888876 87 67777655 4322222233445543 2232111 111
Q ss_pred -----C--CCCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 140 -----V--LPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 140 -----~--~~~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
. ....+|+|+-.. +. .... ...++|+++|.++..
T Consensus 234 ~i~~~t~~~~~g~Dvvid~~-G~--------~~~~-~~~~~l~~~G~~v~~ 274 (364)
T 1gu7_A 234 TIKEWIKQSGGEAKLALNCV-GG--------KSST-GIARKLNNNGLMLTY 274 (364)
T ss_dssp HHHHHHHHHTCCEEEEEESS-CH--------HHHH-HHHHTSCTTCEEEEC
T ss_pred HHHHHhhccCCCceEEEECC-Cc--------hhHH-HHHHHhccCCEEEEe
Confidence 1 124699998521 11 1223 445889999998754
|
| >1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP} | Back alignment and structure |
|---|
Probab=87.09 E-value=0.25 Score=45.84 Aligned_cols=96 Identities=25% Similarity=0.273 Sum_probs=57.0
Q ss_pred HHhcCCCCCCCEEEEECC--cccHHHHHHHH-cCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEccccc-------
Q 016351 70 IFQNKHHFQGKTVLDVGT--GSGILAIWSAQ-AGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVED------- 138 (391)
Q Consensus 70 i~~~~~~~~~~~VLDlGc--GtG~l~~~~a~-~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~------- 138 (391)
+.......++++||-.|+ |.|.....+++ .|+ +|++++.+ +.++.+++ .+.. .++..+-.+
T Consensus 137 l~~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~-~Vi~~~~~~~~~~~~~~----~g~~---~~~d~~~~~~~~~i~~ 208 (333)
T 1wly_A 137 LHQTHKVKPGDYVLIHAAAGGMGHIMVPWARHLGA-TVIGTVSTEEKAETARK----LGCH---HTINYSTQDFAEVVRE 208 (333)
T ss_dssp HHTTSCCCTTCEEEETTTTSTTHHHHHHHHHHTTC-EEEEEESSHHHHHHHHH----HTCS---EEEETTTSCHHHHHHH
T ss_pred HHHhhCCCCCCEEEEECCccHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH----cCCC---EEEECCCHHHHHHHHH
Confidence 333344567899999996 45666666555 477 89999999 66666654 2322 122211111
Q ss_pred CCCCCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 139 IVLPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 139 ~~~~~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
......+|+++... +. ..+....+.|+++|.++..
T Consensus 209 ~~~~~~~d~vi~~~-g~---------~~~~~~~~~l~~~G~iv~~ 243 (333)
T 1wly_A 209 ITGGKGVDVVYDSI-GK---------DTLQKSLDCLRPRGMCAAY 243 (333)
T ss_dssp HHTTCCEEEEEECS-CT---------TTHHHHHHTEEEEEEEEEC
T ss_pred HhCCCCCeEEEECC-cH---------HHHHHHHHhhccCCEEEEE
Confidence 11124699998632 21 1244556789999988744
|
| >1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A* | Back alignment and structure |
|---|
Probab=86.90 E-value=2.6 Score=37.12 Aligned_cols=72 Identities=14% Similarity=0.097 Sum_probs=48.2
Q ss_pred CCCEEEEECCcccH---HHHHHHH-cCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC-----------
Q 016351 78 QGKTVLDVGTGSGI---LAIWSAQ-AGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL----------- 141 (391)
Q Consensus 78 ~~~~VLDlGcGtG~---l~~~~a~-~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~----------- 141 (391)
++++||-.|+..|+ ++..+++ .|+ +|++++.+ ..++.+.+.+...+ .++.++.+|+.+...
T Consensus 3 ~~k~vlITGasggIG~~~a~~L~~~~g~-~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~ 79 (276)
T 1wma_A 3 GIHVALVTGGNKGIGLAIVRDLCRLFSG-DVVLTARDVTRGQAAVQQLQAEG--LSPRFHQLDIDDLQSIRALRDFLRKE 79 (276)
T ss_dssp CCCEEEESSCSSHHHHHHHHHHHHHSSS-EEEEEESSHHHHHHHHHHHHHTT--CCCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHhcCC-eEEEEeCChHHHHHHHHHHHhcC--CeeEEEECCCCCHHHHHHHHHHHHHh
Confidence 45789988876553 3455666 677 79999988 65555555555443 348899999877421
Q ss_pred CCcccEEEEcc
Q 016351 142 PEKVDVIISEW 152 (391)
Q Consensus 142 ~~~~D~Ivse~ 152 (391)
-+++|+||...
T Consensus 80 ~g~id~li~~A 90 (276)
T 1wma_A 80 YGGLDVLVNNA 90 (276)
T ss_dssp HSSEEEEEECC
T ss_pred cCCCCEEEECC
Confidence 03789999743
|
| >4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=86.90 E-value=3.3 Score=36.63 Aligned_cols=72 Identities=18% Similarity=0.303 Sum_probs=52.4
Q ss_pred CCCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC------CCcc
Q 016351 76 HFQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL------PEKV 145 (391)
Q Consensus 76 ~~~~~~VLDlGcGtG~---l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~------~~~~ 145 (391)
.++++++|--|+++|+ .+..+++.|+ +|+.+|.+ . +.+.+.++..+- ++..+..|+.+... .+++
T Consensus 6 ~L~GKvalVTGas~GIG~aiA~~la~~Ga-~Vvi~~r~~~--~~~~~~~~~~g~--~~~~~~~Dv~d~~~v~~~~~~g~i 80 (247)
T 4hp8_A 6 SLEGRKALVTGANTGLGQAIAVGLAAAGA-EVVCAARRAP--DETLDIIAKDGG--NASALLIDFADPLAAKDSFTDAGF 80 (247)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCC--HHHHHHHHHTTC--CEEEEECCTTSTTTTTTSSTTTCC
T ss_pred CCCCCEEEEeCcCCHHHHHHHHHHHHcCC-EEEEEeCCcH--HHHHHHHHHhCC--cEEEEEccCCCHHHHHHHHHhCCC
Confidence 4678999999999986 5677888899 79999987 4 233444555553 48899999877421 1679
Q ss_pred cEEEEcc
Q 016351 146 DVIISEW 152 (391)
Q Consensus 146 D~Ivse~ 152 (391)
|++|.+.
T Consensus 81 DiLVNNA 87 (247)
T 4hp8_A 81 DILVNNA 87 (247)
T ss_dssp CEEEECC
T ss_pred CEEEECC
Confidence 9999854
|
| >3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=86.70 E-value=1.8 Score=38.12 Aligned_cols=73 Identities=18% Similarity=0.088 Sum_probs=53.2
Q ss_pred CCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC-----C-----
Q 016351 77 FQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL-----P----- 142 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~---l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~-----~----- 142 (391)
.++++||-.|++.|+ ++..+++.|+ +|++++.+ +.++.+.+.++..+ .++.++.+|+.+... .
T Consensus 5 ~~~k~vlVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~ 81 (252)
T 3h7a_A 5 PRNATVAVIGAGDYIGAEIAKKFAAEGF-TVFAGRRNGEKLAPLVAEIEAAG--GRIVARSLDARNEDEVTAFLNAADAH 81 (252)
T ss_dssp CCSCEEEEECCSSHHHHHHHHHHHHTTC-EEEEEESSGGGGHHHHHHHHHTT--CEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC--CeEEEEECcCCCHHHHHHHHHHHHhh
Confidence 467899999999875 5566777788 79999998 66666555555544 359999999877421 0
Q ss_pred CcccEEEEcc
Q 016351 143 EKVDVIISEW 152 (391)
Q Consensus 143 ~~~D~Ivse~ 152 (391)
+++|++|.+.
T Consensus 82 g~id~lv~nA 91 (252)
T 3h7a_A 82 APLEVTIFNV 91 (252)
T ss_dssp SCEEEEEECC
T ss_pred CCceEEEECC
Confidence 4789999743
|
| >3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A* | Back alignment and structure |
|---|
Probab=86.47 E-value=3.4 Score=38.05 Aligned_cols=102 Identities=18% Similarity=0.174 Sum_probs=64.6
Q ss_pred CEEEEECCcc-c-HHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHc-------C-CCC---------cEEEEEcccccC
Q 016351 80 KTVLDVGTGS-G-ILAIWSAQAGARKVYAVEAT-KMSDHARTLVKAN-------N-LQD---------VVEVIEGSVEDI 139 (391)
Q Consensus 80 ~~VLDlGcGt-G-~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~-------~-~~~---------~v~~i~~d~~~~ 139 (391)
.+|.-||+|+ | .++..+|.+|. .|+.+|++ +.++.+.++++.+ + +.. ++++. .|..+.
T Consensus 7 ~~VaViGaG~MG~giA~~~a~~G~-~V~l~D~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~l~~i~~~-~~l~~a 84 (319)
T 3ado_A 7 GDVLIVGSGLVGRSWAMLFASGGF-RVKLYDIEPRQITGALENIRKEMKSLQQSGSLKGSLSAEEQLSLISSC-TNLAEA 84 (319)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC-CEEEECSCHHHHHHHHHHHHHHHHHHHHTTCCCSSSCHHHHHHTEEEE-CCHHHH
T ss_pred CeEEEECCcHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCCccCHHHHHhhcccc-cchHhH
Confidence 6799999997 4 46778888898 69999999 7777766555431 1 111 13322 222221
Q ss_pred CCCCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcccceeEE
Q 016351 140 VLPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHARMWV 189 (391)
Q Consensus 140 ~~~~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~~~~~~ 189 (391)
-...|+|+= .+ ......-..++.++.++++|+.++--+..++-.
T Consensus 85 --~~~ad~ViE-av---~E~l~iK~~lf~~l~~~~~~~aIlaSNTSsl~i 128 (319)
T 3ado_A 85 --VEGVVHIQE-CV---PENLDLKRKIFAQLDSIVDDRVVLSSSSSCLLP 128 (319)
T ss_dssp --TTTEEEEEE-CC---CSCHHHHHHHHHHHHTTCCSSSEEEECCSSCCH
T ss_pred --hccCcEEee-cc---ccHHHHHHHHHHHHHHHhhhcceeehhhhhccc
Confidence 146788773 22 222234568899999999999977655554443
|
| >2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A* | Back alignment and structure |
|---|
Probab=86.46 E-value=0.32 Score=45.60 Aligned_cols=93 Identities=19% Similarity=0.068 Sum_probs=54.7
Q ss_pred cCCCCCCCEEEEECC--cccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEccccc-------CCC
Q 016351 73 NKHHFQGKTVLDVGT--GSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVED-------IVL 141 (391)
Q Consensus 73 ~~~~~~~~~VLDlGc--GtG~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~-------~~~ 141 (391)
.....++++||-.|+ |.|..+..+++. |+ +|++++.+ +.++.+++ .|.. .++..+-.+ ...
T Consensus 157 ~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~----~g~~---~~~~~~~~~~~~~~~~~~~ 228 (354)
T 2j8z_A 157 VGNVQAGDYVLIHAGLSGVGTAAIQLTRMAGA-IPLVTAGSQKKLQMAEK----LGAA---AGFNYKKEDFSEATLKFTK 228 (354)
T ss_dssp TSCCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHH----HTCS---EEEETTTSCHHHHHHHHTT
T ss_pred hcCCCCCCEEEEECCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHH----cCCc---EEEecCChHHHHHHHHHhc
Confidence 344567899999984 346666665554 77 79999988 66666643 2322 122211111 111
Q ss_pred CCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 142 PEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 142 ~~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
...+|+++... +. . .+....+.|+++|.++..
T Consensus 229 ~~~~d~vi~~~-G~----~-----~~~~~~~~l~~~G~iv~~ 260 (354)
T 2j8z_A 229 GAGVNLILDCI-GG----S-----YWEKNVNCLALDGRWVLY 260 (354)
T ss_dssp TSCEEEEEESS-CG----G-----GHHHHHHHEEEEEEEEEC
T ss_pred CCCceEEEECC-Cc----h-----HHHHHHHhccCCCEEEEE
Confidence 24699998632 21 1 234455778999998754
|
| >1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A* | Back alignment and structure |
|---|
Probab=86.45 E-value=3.3 Score=37.55 Aligned_cols=95 Identities=14% Similarity=0.250 Sum_probs=58.1
Q ss_pred CEEEEECCcc-cH-HHHHHHHcCCCeEEEEech-HHHHHHHHHHHH-------cCC-C-------------CcEEEEEcc
Q 016351 80 KTVLDVGTGS-GI-LAIWSAQAGARKVYAVEAT-KMSDHARTLVKA-------NNL-Q-------------DVVEVIEGS 135 (391)
Q Consensus 80 ~~VLDlGcGt-G~-l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~-------~~~-~-------------~~v~~i~~d 135 (391)
++|.-||+|. |. ++..++++|. +|+.+|.+ +.++.+++.+.. .|. . .++++. .|
T Consensus 16 ~~I~VIG~G~mG~~iA~~la~~G~-~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~~~~~~i~~~-~~ 93 (302)
T 1f0y_A 16 KHVTVIGGGLMGAGIAQVAAATGH-TVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATS-TD 93 (302)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEE-SC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCccccchhhHHHHHhceEEe-cC
Confidence 5799999997 43 6777888887 79999999 777665443321 221 1 124332 23
Q ss_pred cccCCCCCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEc
Q 016351 136 VEDIVLPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 136 ~~~~~~~~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~ 182 (391)
..+. -...|+||.-.. ........++..+...++++.+++-
T Consensus 94 ~~~~--~~~aD~Vi~avp----~~~~~~~~v~~~l~~~~~~~~iv~s 134 (302)
T 1f0y_A 94 AASV--VHSTDLVVEAIV----ENLKVKNELFKRLDKFAAEHTIFAS 134 (302)
T ss_dssp HHHH--TTSCSEEEECCC----SCHHHHHHHHHHHTTTSCTTCEEEE
T ss_pred HHHh--hcCCCEEEEcCc----CcHHHHHHHHHHHHhhCCCCeEEEE
Confidence 3311 157899986321 1111235677788888888886653
|
| >3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5} | Back alignment and structure |
|---|
Probab=86.38 E-value=2.1 Score=37.86 Aligned_cols=75 Identities=16% Similarity=0.182 Sum_probs=53.2
Q ss_pred CCCCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC---------
Q 016351 75 HHFQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL--------- 141 (391)
Q Consensus 75 ~~~~~~~VLDlGcGtG~---l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~--------- 141 (391)
...++++||-.|++.|+ ++..+++.|+ +|++++.+ +.++.+.+.+...+ .++.++..|+.+..-
T Consensus 25 ~~l~~k~vlITGas~gIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~v~~~~~~~~ 101 (262)
T 3rkr_A 25 SSLSGQVAVVTGASRGIGAAIARKLGSLGA-RVVLTARDVEKLRAVEREIVAAG--GEAESHACDLSHSDAIAAFATGVL 101 (262)
T ss_dssp CTTTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT--CEEEEEECCTTCHHHHHHHHHHHH
T ss_pred hccCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHhC--CceeEEEecCCCHHHHHHHHHHHH
Confidence 34577899999987764 4556667788 69999998 66666655555544 348999999877421
Q ss_pred --CCcccEEEEcc
Q 016351 142 --PEKVDVIISEW 152 (391)
Q Consensus 142 --~~~~D~Ivse~ 152 (391)
-+++|++|...
T Consensus 102 ~~~g~id~lv~~A 114 (262)
T 3rkr_A 102 AAHGRCDVLVNNA 114 (262)
T ss_dssp HHHSCCSEEEECC
T ss_pred HhcCCCCEEEECC
Confidence 14689999753
|
| >3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis} | Back alignment and structure |
|---|
Probab=86.19 E-value=2.7 Score=37.06 Aligned_cols=74 Identities=20% Similarity=0.253 Sum_probs=54.0
Q ss_pred CCCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC----------
Q 016351 76 HFQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL---------- 141 (391)
Q Consensus 76 ~~~~~~VLDlGcGtG~---l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~---------- 141 (391)
.++++++|-.|++.|+ ++..+++.|+ +|+.++.+ +.++.+.+.++..+ .++.++..|+.+...
T Consensus 9 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~ 85 (256)
T 3gaf_A 9 HLNDAVAIVTGAAAGIGRAIAGTFAKAGA-SVVVTDLKSEGAEAVAAAIRQAG--GKAIGLECNVTDEQHREAVIKAALD 85 (256)
T ss_dssp CCTTCEEEECSCSSHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHHH
Confidence 3567899999998874 4566777788 79999998 66666655555554 348999999877521
Q ss_pred -CCcccEEEEcc
Q 016351 142 -PEKVDVIISEW 152 (391)
Q Consensus 142 -~~~~D~Ivse~ 152 (391)
-+++|++|.+.
T Consensus 86 ~~g~id~lv~nA 97 (256)
T 3gaf_A 86 QFGKITVLVNNA 97 (256)
T ss_dssp HHSCCCEEEECC
T ss_pred HcCCCCEEEECC
Confidence 04789999853
|
| >3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=86.11 E-value=2.8 Score=36.65 Aligned_cols=73 Identities=21% Similarity=0.264 Sum_probs=53.0
Q ss_pred CCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC-----------
Q 016351 77 FQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL----------- 141 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~---l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~----------- 141 (391)
.++++||-.|++.|+ ++..+++.|+ +|+.++.+ +.++.+.+.++..+ .++.++.+|+.+...
T Consensus 7 ~~~k~vlITGas~giG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~ 83 (253)
T 3qiv_A 7 FENKVGIVTGSGGGIGQAYAEALAREGA-AVVVADINAEAAEAVAKQIVADG--GTAISVAVDVSDPESAKAMADRTLAE 83 (253)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT--CEEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 467899999988764 5666777788 79999998 66666655555543 358999999887521
Q ss_pred CCcccEEEEcc
Q 016351 142 PEKVDVIISEW 152 (391)
Q Consensus 142 ~~~~D~Ivse~ 152 (391)
-+++|++|...
T Consensus 84 ~g~id~li~~A 94 (253)
T 3qiv_A 84 FGGIDYLVNNA 94 (253)
T ss_dssp HSCCCEEEECC
T ss_pred cCCCCEEEECC
Confidence 03789999854
|
| >3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B* | Back alignment and structure |
|---|
Probab=86.07 E-value=5.2 Score=36.07 Aligned_cols=83 Identities=18% Similarity=0.255 Sum_probs=50.1
Q ss_pred HhHHHHHHHHHhcCCCCCCCEEEEECCcc-cH-HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccc
Q 016351 61 VRMDAYFNSIFQNKHHFQGKTVLDVGTGS-GI-LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVE 137 (391)
Q Consensus 61 ~r~~~~~~~i~~~~~~~~~~~VLDlGcGt-G~-l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~ 137 (391)
.....+.+.+...-...++++||-+|+|. |. .+..+++.|+++|+.++.+ +.++...+.+...+ .+... +..
T Consensus 108 TD~~G~~~~L~~~~~~l~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la~~~~~~~---~~~~~--~~~ 182 (281)
T 3o8q_A 108 TDGEGLVQDLLAQQVLLKGATILLIGAGGAARGVLKPLLDQQPASITVTNRTFAKAEQLAELVAAYG---EVKAQ--AFE 182 (281)
T ss_dssp CHHHHHHHHHHHTTCCCTTCEEEEECCSHHHHHHHHHHHTTCCSEEEEEESSHHHHHHHHHHHGGGS---CEEEE--EGG
T ss_pred cHHHHHHHHHHHhCCCccCCEEEEECchHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhccC---CeeEe--eHH
Confidence 34556667676543345789999999973 21 2344555687789999988 54443333333222 24544 333
Q ss_pred cCCCCCcccEEEE
Q 016351 138 DIVLPEKVDVIIS 150 (391)
Q Consensus 138 ~~~~~~~~D~Ivs 150 (391)
++. ..+|+||+
T Consensus 183 ~l~--~~aDiIIn 193 (281)
T 3o8q_A 183 QLK--QSYDVIIN 193 (281)
T ss_dssp GCC--SCEEEEEE
T ss_pred Hhc--CCCCEEEE
Confidence 433 67999997
|
| >2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A* | Back alignment and structure |
|---|
Probab=86.05 E-value=0.47 Score=44.98 Aligned_cols=98 Identities=16% Similarity=0.120 Sum_probs=51.9
Q ss_pred CCCCEEEEECCcc-cHHHHHHHH-cCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC-CCCcccEEEEcc
Q 016351 77 FQGKTVLDVGTGS-GILAIWSAQ-AGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV-LPEKVDVIISEW 152 (391)
Q Consensus 77 ~~~~~VLDlGcGt-G~l~~~~a~-~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~-~~~~~D~Ivse~ 152 (391)
.++++|+-+|+|. |......++ .|+ +|+++|.+ ..++.+++. .+.. +.....+..++. .-..+|+|+.-.
T Consensus 166 l~g~~V~ViG~G~iG~~~a~~a~~~Ga-~V~~~d~~~~~l~~~~~~---~g~~--~~~~~~~~~~l~~~l~~aDvVi~~~ 239 (377)
T 2vhw_A 166 VEPADVVVIGAGTAGYNAARIANGMGA-TVTVLDINIDKLRQLDAE---FCGR--IHTRYSSAYELEGAVKRADLVIGAV 239 (377)
T ss_dssp BCCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHH---TTTS--SEEEECCHHHHHHHHHHCSEEEECC
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHh---cCCe--eEeccCCHHHHHHHHcCCCEEEECC
Confidence 4678999999975 444433333 487 89999999 655555432 2221 222221211211 014689998622
Q ss_pred ccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 153 MGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 153 ~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
......... .+.....+.++|||+++..
T Consensus 240 ~~p~~~t~~---li~~~~l~~mk~g~~iV~v 267 (377)
T 2vhw_A 240 LVPGAKAPK---LVSNSLVAHMKPGAVLVDI 267 (377)
T ss_dssp CCTTSCCCC---CBCHHHHTTSCTTCEEEEG
T ss_pred CcCCCCCcc---eecHHHHhcCCCCcEEEEE
Confidence 101101111 1123445678999988744
|
| >1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=86.02 E-value=2.8 Score=37.33 Aligned_cols=75 Identities=19% Similarity=0.171 Sum_probs=52.5
Q ss_pred CCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC-----------
Q 016351 77 FQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL----------- 141 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~---l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~----------- 141 (391)
.++++||-.|++.|+ ++..+++.|+ +|++++.+ ..++...+.++..+...++.++.+|+.+...
T Consensus 30 l~~k~vlVTGasggIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~ 108 (279)
T 1xg5_A 30 WRDRLALVTGASGGIGAAVARALVQQGL-KVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQ 108 (279)
T ss_dssp GTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEECChHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHh
Confidence 456899999987663 4455666787 79999988 6565555556665555568899999877421
Q ss_pred CCcccEEEEcc
Q 016351 142 PEKVDVIISEW 152 (391)
Q Consensus 142 ~~~~D~Ivse~ 152 (391)
-+++|+||...
T Consensus 109 ~g~iD~vi~~A 119 (279)
T 1xg5_A 109 HSGVDICINNA 119 (279)
T ss_dssp HCCCSEEEECC
T ss_pred CCCCCEEEECC
Confidence 03689999743
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=85.98 E-value=6.6 Score=34.75 Aligned_cols=80 Identities=14% Similarity=0.048 Sum_probs=50.6
Q ss_pred CEEEEECCcccHHHHHHHH----cCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEcccc
Q 016351 80 KTVLDVGTGSGILAIWSAQ----AGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMG 154 (391)
Q Consensus 80 ~~VLDlGcGtG~l~~~~a~----~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~~D~Ivse~~~ 154 (391)
++||-.|| |.++..+++ .|. +|++++.+ ....... . ..++++.+|+.++. -..+|+||.-. +
T Consensus 6 ~~ilVtGa--G~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~----~----~~~~~~~~D~~d~~-~~~~d~vi~~a-~ 72 (286)
T 3ius_A 6 GTLLSFGH--GYTARVLSRALAPQGW-RIIGTSRNPDQMEAIR----A----SGAEPLLWPGEEPS-LDGVTHLLIST-A 72 (286)
T ss_dssp CEEEEETC--CHHHHHHHHHHGGGTC-EEEEEESCGGGHHHHH----H----TTEEEEESSSSCCC-CTTCCEEEECC-C
T ss_pred CcEEEECC--cHHHHHHHHHHHHCCC-EEEEEEcChhhhhhHh----h----CCCeEEEecccccc-cCCCCEEEECC-C
Confidence 57999995 777666554 366 79999988 4332222 1 23899999999877 57899999733 1
Q ss_pred ccccCcchHHHHHHHHhc
Q 016351 155 YFLLRESMFDSVICARDR 172 (391)
Q Consensus 155 ~~~~~e~~l~~~l~~~~~ 172 (391)
...........+++.+.+
T Consensus 73 ~~~~~~~~~~~l~~a~~~ 90 (286)
T 3ius_A 73 PDSGGDPVLAALGDQIAA 90 (286)
T ss_dssp CBTTBCHHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHHh
Confidence 111122233455665544
|
| >3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=85.94 E-value=2.9 Score=36.95 Aligned_cols=74 Identities=23% Similarity=0.292 Sum_probs=52.7
Q ss_pred CCCCEEEEECC-cccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC----------
Q 016351 77 FQGKTVLDVGT-GSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL---------- 141 (391)
Q Consensus 77 ~~~~~VLDlGc-GtG~---l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~---------- 141 (391)
.++++||-.|+ |+|+ ++..+++.|+ +|+.++.+ +.++.+.+.++..+ ..++.++..|+.+...
T Consensus 20 l~~k~vlITGasg~GIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~Dl~~~~~v~~~~~~~~~ 97 (266)
T 3o38_A 20 LKGKVVLVTAAAGTGIGSTTARRALLEGA-DVVISDYHERRLGETRDQLADLG-LGRVEAVVCDVTSTEAVDALITQTVE 97 (266)
T ss_dssp TTTCEEEESSCSSSSHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTC-SSCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCchHHHHHHHHHHCCC-EEEEecCCHHHHHHHHHHHHhcC-CCceEEEEeCCCCHHHHHHHHHHHHH
Confidence 46789999998 6664 5667778888 79999998 66665555554443 2359999999887421
Q ss_pred -CCcccEEEEcc
Q 016351 142 -PEKVDVIISEW 152 (391)
Q Consensus 142 -~~~~D~Ivse~ 152 (391)
-+++|++|...
T Consensus 98 ~~g~id~li~~A 109 (266)
T 3o38_A 98 KAGRLDVLVNNA 109 (266)
T ss_dssp HHSCCCEEEECC
T ss_pred HhCCCcEEEECC
Confidence 04789999853
|
| >4ft4_B DNA (cytosine-5)-methyltransferase 1; chromodomain, BAH domain, DNA methyltransferase domain, H3K9 binding, methylation, transferase; HET: DNA MLY SAH; 2.70A {Zea mays} PDB: 4ft2_A* 4fsx_A* | Back alignment and structure |
|---|
Probab=85.93 E-value=2.1 Score=44.62 Aligned_cols=40 Identities=18% Similarity=0.163 Sum_probs=32.2
Q ss_pred CEEEEECCcccHHHHHHHHcC------CCeEEEEech-HHHHHHHHH
Q 016351 80 KTVLDVGTGSGILAIWSAQAG------ARKVYAVEAT-KMSDHARTL 119 (391)
Q Consensus 80 ~~VLDlGcGtG~l~~~~a~~g------~~~V~avD~s-~~~~~a~~~ 119 (391)
.+||||-||.|.+++-+.++| ...+.|+|++ .+++.-+.|
T Consensus 213 ltvIDLFAG~GGls~Gfe~AG~~~~~~f~vv~AvE~d~~A~~Ty~~N 259 (784)
T 4ft4_B 213 ATLLDLYSGCGGMSTGLCLGAALSGLKLETRWAVDFNSFACQSLKYN 259 (784)
T ss_dssp EEEEEETCTTSHHHHHHHHHHHHHTEEEEEEEEEESCHHHHHHHHHH
T ss_pred CeEEEeCcCccHHHHHHHHhCcccCCceeEEEEEeCCHHHHHHHHHH
Confidence 579999999999999888876 5568999999 655555544
|
| >3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=85.63 E-value=2.6 Score=37.85 Aligned_cols=73 Identities=22% Similarity=0.248 Sum_probs=51.6
Q ss_pred CCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC-----------
Q 016351 77 FQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL----------- 141 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~---l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~----------- 141 (391)
.+++++|-.|++.|+ ++..+++.|+ +|+.++.+ +.++.+.+.+...+ .++.++..|+.+...
T Consensus 26 ~~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~ 102 (283)
T 3v8b_A 26 QPSPVALITGAGSGIGRATALALAADGV-TVGALGRTRTEVEEVADEIVGAG--GQAIALEADVSDELQMRNAVRDLVLK 102 (283)
T ss_dssp -CCCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHTTTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 467899999998874 4566777788 79999998 66655555444333 458999999877421
Q ss_pred CCcccEEEEcc
Q 016351 142 PEKVDVIISEW 152 (391)
Q Consensus 142 ~~~~D~Ivse~ 152 (391)
-+++|++|.+.
T Consensus 103 ~g~iD~lVnnA 113 (283)
T 3v8b_A 103 FGHLDIVVANA 113 (283)
T ss_dssp HSCCCEEEECC
T ss_pred hCCCCEEEECC
Confidence 14799999753
|
| >3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A* | Back alignment and structure |
|---|
Probab=85.44 E-value=3.5 Score=36.43 Aligned_cols=74 Identities=15% Similarity=0.082 Sum_probs=52.2
Q ss_pred CCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHH-cCCCCcEEEEEcccccCCC----------
Q 016351 77 FQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKA-NNLQDVVEVIEGSVEDIVL---------- 141 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~---l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~-~~~~~~v~~i~~d~~~~~~---------- 141 (391)
++++++|-.|++.|+ ++..+++.|+ +|+.++.+ +.++.+.+.+.. .+ ..++.++..|+.+...
T Consensus 6 l~~k~~lVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~~~Dv~~~~~v~~~~~~~~~ 83 (265)
T 3lf2_A 6 LSEAVAVVTGGSSGIGLATVELLLEAGA-AVAFCARDGERLRAAESALRQRFP-GARLFASVCDVLDALQVRAFAEACER 83 (265)
T ss_dssp CTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHST-TCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhcC-CceEEEEeCCCCCHHHHHHHHHHHHH
Confidence 567899999998874 4566777788 79999998 665555554444 32 2248999999877421
Q ss_pred -CCcccEEEEcc
Q 016351 142 -PEKVDVIISEW 152 (391)
Q Consensus 142 -~~~~D~Ivse~ 152 (391)
-++.|++|.+.
T Consensus 84 ~~g~id~lvnnA 95 (265)
T 3lf2_A 84 TLGCASILVNNA 95 (265)
T ss_dssp HHCSCSEEEECC
T ss_pred HcCCCCEEEECC
Confidence 14789999854
|
| >3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=85.23 E-value=3.4 Score=37.21 Aligned_cols=75 Identities=19% Similarity=0.246 Sum_probs=51.7
Q ss_pred CCCEEEEECCcccH---HHHHHHHcCC--CeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC--------C-
Q 016351 78 QGKTVLDVGTGSGI---LAIWSAQAGA--RKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL--------P- 142 (391)
Q Consensus 78 ~~~~VLDlGcGtG~---l~~~~a~~g~--~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~--------~- 142 (391)
+++++|-.|++.|+ ++..+++.|+ .+|+.++.+ +.++.+.+.+....-..++.++.+|+.+... .
T Consensus 32 ~~k~~lVTGas~GIG~aia~~l~~~G~~~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~ 111 (287)
T 3rku_A 32 AKKTVLITGASAGIGKATALEYLEASNGDMKLILAARRLEKLEELKKTIDQEFPNAKVHVAQLDITQAEKIKPFIENLPQ 111 (287)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCTTCEEEEEECCTTCGGGHHHHHHTSCG
T ss_pred CCCEEEEecCCChHHHHHHHHHHHcCCCCceEEEEECCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHHH
Confidence 57899999998875 3455566665 379999998 6666655555543223458999999877531 1
Q ss_pred --CcccEEEEcc
Q 016351 143 --EKVDVIISEW 152 (391)
Q Consensus 143 --~~~D~Ivse~ 152 (391)
+++|++|.+.
T Consensus 112 ~~g~iD~lVnnA 123 (287)
T 3rku_A 112 EFKDIDILVNNA 123 (287)
T ss_dssp GGCSCCEEEECC
T ss_pred hcCCCCEEEECC
Confidence 4789999854
|
| >2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A* | Back alignment and structure |
|---|
Probab=85.04 E-value=2.2 Score=39.87 Aligned_cols=83 Identities=24% Similarity=0.226 Sum_probs=51.1
Q ss_pred CCEEEEECCcc-cHHHHHHHHc-CCCeEEEEechH----HHHHHHHHHHHcCCCCcEEEEEcccccCCCC-------Ccc
Q 016351 79 GKTVLDVGTGS-GILAIWSAQA-GARKVYAVEATK----MSDHARTLVKANNLQDVVEVIEGSVEDIVLP-------EKV 145 (391)
Q Consensus 79 ~~~VLDlGcGt-G~l~~~~a~~-g~~~V~avD~s~----~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~-------~~~ 145 (391)
+++||-+|+|. |.++..+++. |+ +|++++.++ .++.++ ..|. +.+ | .+ ... +.+
T Consensus 181 g~~VlV~GaG~vG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~~~----~~ga----~~v--~-~~-~~~~~~~~~~~~~ 247 (366)
T 2cdc_A 181 CRKVLVVGTGPIGVLFTLLFRTYGL-EVWMANRREPTEVEQTVIE----ETKT----NYY--N-SS-NGYDKLKDSVGKF 247 (366)
T ss_dssp TCEEEEESCHHHHHHHHHHHHHHTC-EEEEEESSCCCHHHHHHHH----HHTC----EEE--E-CT-TCSHHHHHHHCCE
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeCCccchHHHHHHH----HhCC----cee--c-hH-HHHHHHHHhCCCC
Confidence 89999999954 5566666654 88 899999863 334443 3342 222 2 22 111 368
Q ss_pred cEEEEccccccccCcchHHHHH-HHHhccccCCeEEEcc
Q 016351 146 DVIISEWMGYFLLRESMFDSVI-CARDRWLKPTGVMYPS 183 (391)
Q Consensus 146 D~Ivse~~~~~~~~e~~l~~~l-~~~~~~L~~gG~ii~~ 183 (391)
|+|+... + .. ..+ ....+.|+++|.++..
T Consensus 248 d~vid~~-g----~~----~~~~~~~~~~l~~~G~iv~~ 277 (366)
T 2cdc_A 248 DVIIDAT-G----AD----VNILGNVIPLLGRNGVLGLF 277 (366)
T ss_dssp EEEEECC-C----CC----THHHHHHGGGEEEEEEEEEC
T ss_pred CEEEECC-C----Ch----HHHHHHHHHHHhcCCEEEEE
Confidence 9998632 1 11 124 6677889999988754
|
| >3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=85.02 E-value=3.1 Score=36.50 Aligned_cols=75 Identities=17% Similarity=0.170 Sum_probs=52.4
Q ss_pred CCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcC-CCCcEEEEEcccccCCC----------
Q 016351 77 FQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANN-LQDVVEVIEGSVEDIVL---------- 141 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~---l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~-~~~~v~~i~~d~~~~~~---------- 141 (391)
..++++|-.|++.|+ ++..+++.|+ +|+.++.+ +.++.+.+.+.... -..++.++..|+.+...
T Consensus 5 ~~~k~~lVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 83 (250)
T 3nyw_A 5 KQKGLAIITGASQGIGAVIAAGLATDGY-RVVLIARSKQNLEKVHDEIMRSNKHVQEPIVLPLDITDCTKADTEIKDIHQ 83 (250)
T ss_dssp CCCCEEEEESTTSHHHHHHHHHHHHHTC-EEEEEESCHHHHHHHHHHHHHHCTTSCCCEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHhccccCcceEEeccCCCHHHHHHHHHHHHH
Confidence 467899999998874 4666777788 79999998 66655555444432 11348899999887421
Q ss_pred -CCcccEEEEcc
Q 016351 142 -PEKVDVIISEW 152 (391)
Q Consensus 142 -~~~~D~Ivse~ 152 (391)
-+++|++|.+.
T Consensus 84 ~~g~iD~lvnnA 95 (250)
T 3nyw_A 84 KYGAVDILVNAA 95 (250)
T ss_dssp HHCCEEEEEECC
T ss_pred hcCCCCEEEECC
Confidence 14789999754
|
| >4f3n_A Uncharacterized ACR, COG1565 superfamily; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.75A {Burkholderia thailandensis} PDB: 4g67_A* | Back alignment and structure |
|---|
Probab=84.91 E-value=1.6 Score=42.04 Aligned_cols=70 Identities=26% Similarity=0.446 Sum_probs=44.6
Q ss_pred CCEEEEECCcccHHHHHHHHc----C--CCeEEEEech-HHHHHHHHHHHHc--CCCCcEEEEEcccccCCCCCccc-EE
Q 016351 79 GKTVLDVGTGSGILAIWSAQA----G--ARKVYAVEAT-KMSDHARTLVKAN--NLQDVVEVIEGSVEDIVLPEKVD-VI 148 (391)
Q Consensus 79 ~~~VLDlGcGtG~l~~~~a~~----g--~~~V~avD~s-~~~~~a~~~~~~~--~~~~~v~~i~~d~~~~~~~~~~D-~I 148 (391)
...|+|+|+|+|.|+.-+.+. + ..+++.||+| .+.+.-++.+... .+..+|++.. + +|+.+. +|
T Consensus 138 ~~~ivE~GaG~GtLa~DiL~~l~~~~~~~~~y~iVE~Sp~Lr~~Q~~~L~~~~~~~~~~v~W~~----~--lP~~~~g~i 211 (432)
T 4f3n_A 138 TRRVMEFGAGTGKLAAGLLTALAALGVELDEYAIVDLSGELRARQRETLGAQAPGLAARVRWLD----A--LPERFEGVV 211 (432)
T ss_dssp CCEEEEESCTTSHHHHHHHHHHHHTTCCCSEEEEECTTSSSHHHHHHHHHHHSTTTGGGEEEES----S--CCSCEEEEE
T ss_pred CCeEEEeCCCccHHHHHHHHHHHhcCCCCceEEEEEcCHHHHHHHHHHHhccccccCCCceecc----c--CCccCceEE
Confidence 468999999999987665543 2 2379999999 6666666655532 1334577753 1 345555 55
Q ss_pred EE-cccc
Q 016351 149 IS-EWMG 154 (391)
Q Consensus 149 vs-e~~~ 154 (391)
++ |+++
T Consensus 212 iANE~fD 218 (432)
T 4f3n_A 212 VGNEVLD 218 (432)
T ss_dssp EEESCGG
T ss_pred Eeehhhc
Confidence 65 4443
|
| >3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber} | Back alignment and structure |
|---|
Probab=84.44 E-value=3.4 Score=36.96 Aligned_cols=73 Identities=21% Similarity=0.168 Sum_probs=51.0
Q ss_pred CCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC-----------
Q 016351 77 FQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL----------- 141 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~---l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~----------- 141 (391)
.+++++|-.|++.|+ ++..+++.|+ +|++++.+ +.++.+.+.+...+ .++.++..|+.+...
T Consensus 22 ~~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~ 98 (279)
T 3sju_A 22 SRPQTAFVTGVSSGIGLAVARTLAARGI-AVYGCARDAKNVSAAVDGLRAAG--HDVDGSSCDVTSTDEVHAAVAAAVER 98 (279)
T ss_dssp ---CEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHHHH
Confidence 356899999988874 4566777788 79999998 66666555555544 349999999877421
Q ss_pred CCcccEEEEcc
Q 016351 142 PEKVDVIISEW 152 (391)
Q Consensus 142 ~~~~D~Ivse~ 152 (391)
-+++|++|.+.
T Consensus 99 ~g~id~lv~nA 109 (279)
T 3sju_A 99 FGPIGILVNSA 109 (279)
T ss_dssp HCSCCEEEECC
T ss_pred cCCCcEEEECC
Confidence 14789999753
|
| >3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans} | Back alignment and structure |
|---|
Probab=84.41 E-value=4.1 Score=36.35 Aligned_cols=75 Identities=23% Similarity=0.187 Sum_probs=53.3
Q ss_pred CCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCC-CCcEEEEEcccccCCC----------
Q 016351 77 FQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNL-QDVVEVIEGSVEDIVL---------- 141 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~---l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~-~~~v~~i~~d~~~~~~---------- 141 (391)
+++++||-.|++.|+ ++..+++.|+ +|+.++.+ +.++.+.+.++..+- ..++.++.+|+.+...
T Consensus 9 l~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 87 (281)
T 3svt_A 9 FQDRTYLVTGGGSGIGKGVAAGLVAAGA-SVMIVGRNPDKLAGAVQELEALGANGGAIRYEPTDITNEDETARAVDAVTA 87 (281)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTCCSSCEEEEEECCTTSHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEeCCCCCHHHHHHHHHHHHH
Confidence 567899999998774 4566777788 79999998 666655555554433 1258999999877421
Q ss_pred -CCcccEEEEcc
Q 016351 142 -PEKVDVIISEW 152 (391)
Q Consensus 142 -~~~~D~Ivse~ 152 (391)
-+++|++|.+.
T Consensus 88 ~~g~id~lv~nA 99 (281)
T 3svt_A 88 WHGRLHGVVHCA 99 (281)
T ss_dssp HHSCCCEEEECC
T ss_pred HcCCCCEEEECC
Confidence 14789999754
|
| >3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis} | Back alignment and structure |
|---|
Probab=84.32 E-value=3.3 Score=37.23 Aligned_cols=71 Identities=28% Similarity=0.324 Sum_probs=49.6
Q ss_pred CCCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC-------CCc
Q 016351 76 HFQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL-------PEK 144 (391)
Q Consensus 76 ~~~~~~VLDlGcGtG~---l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~-------~~~ 144 (391)
..++++||-.|++.|+ ++..+++.|+ +|++++.+ ..++.+.+ .+..++.++..|+.+..- -++
T Consensus 13 ~l~gk~vlVTGas~gIG~~~a~~L~~~G~-~V~~~~r~~~~~~~~~~-----~~~~~~~~~~~Dl~d~~~v~~~~~~~~~ 86 (291)
T 3rd5_A 13 SFAQRTVVITGANSGLGAVTARELARRGA-TVIMAVRDTRKGEAAAR-----TMAGQVEVRELDLQDLSSVRRFADGVSG 86 (291)
T ss_dssp CCTTCEEEEECCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHT-----TSSSEEEEEECCTTCHHHHHHHHHTCCC
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHH-----HhcCCeeEEEcCCCCHHHHHHHHHhcCC
Confidence 4678999999988764 4566677788 79999998 54443322 123569999999877521 147
Q ss_pred ccEEEEcc
Q 016351 145 VDVIISEW 152 (391)
Q Consensus 145 ~D~Ivse~ 152 (391)
+|++|.+.
T Consensus 87 iD~lv~nA 94 (291)
T 3rd5_A 87 ADVLINNA 94 (291)
T ss_dssp EEEEEECC
T ss_pred CCEEEECC
Confidence 89999753
|
| >4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A | Back alignment and structure |
|---|
Probab=84.31 E-value=1.5 Score=42.29 Aligned_cols=94 Identities=20% Similarity=0.167 Sum_probs=56.8
Q ss_pred CCCCCCCEEEEECC-c-ccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEccc-------------
Q 016351 74 KHHFQGKTVLDVGT-G-SGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSV------------- 136 (391)
Q Consensus 74 ~~~~~~~~VLDlGc-G-tG~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~------------- 136 (391)
....++++||-.|+ | .|.++..++++ |+ +|++++.+ +.++.++ ..|....+.....+.
T Consensus 216 ~~~~~g~~VlV~GasG~iG~~a~qla~~~Ga-~vi~~~~~~~~~~~~~----~lGa~~~i~~~~~~~~~~~~~~~~~~~~ 290 (447)
T 4a0s_A 216 AQMKQGDIVLIWGASGGLGSYAIQFVKNGGG-IPVAVVSSAQKEAAVR----ALGCDLVINRAELGITDDIADDPRRVVE 290 (447)
T ss_dssp TCCCTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHH----HTTCCCEEEHHHHTCCTTGGGCHHHHHH
T ss_pred cCCCCCCEEEEECCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHH----hcCCCEEEecccccccccccccccccch
Confidence 44567899999997 4 37777777776 77 78999888 6666554 345432121111111
Q ss_pred ---------ccCCCCCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 137 ---------EDIVLPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 137 ---------~~~~~~~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
.+.. ...+|+|+... +. ..+....+.|+++|.++..
T Consensus 291 ~~~~~~~~v~~~~-g~g~Dvvid~~-G~---------~~~~~~~~~l~~~G~iv~~ 335 (447)
T 4a0s_A 291 TGRKLAKLVVEKA-GREPDIVFEHT-GR---------VTFGLSVIVARRGGTVVTC 335 (447)
T ss_dssp HHHHHHHHHHHHH-SSCCSEEEECS-CH---------HHHHHHHHHSCTTCEEEES
T ss_pred hhhHHHHHHHHHh-CCCceEEEECC-Cc---------hHHHHHHHHHhcCCEEEEE
Confidence 0111 34699998522 11 1345566789999998854
|
| >1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=84.14 E-value=6 Score=38.40 Aligned_cols=94 Identities=22% Similarity=0.309 Sum_probs=58.0
Q ss_pred CEEEEECCcc-c-HHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHc-------C------CCC-cEEEEEcccccCCCC
Q 016351 80 KTVLDVGTGS-G-ILAIWSAQAGARKVYAVEAT-KMSDHARTLVKAN-------N------LQD-VVEVIEGSVEDIVLP 142 (391)
Q Consensus 80 ~~VLDlGcGt-G-~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~-------~------~~~-~v~~i~~d~~~~~~~ 142 (391)
.+|.-||+|. | .++..++++|. .|+.+|.+ +.++.+++.+..+ + ... ...+ ..|...+
T Consensus 38 ~kV~VIGaG~MG~~iA~~la~~G~-~V~l~D~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i-~~~~~~~--- 112 (463)
T 1zcj_A 38 SSVGVLGLGTMGRGIAISFARVGI-SVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRF-SSSTKEL--- 112 (463)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTC-EEEEECSSHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEE-ESCGGGG---
T ss_pred CEEEEECcCHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhh-cCCHHHH---
Confidence 5799999997 4 45667777787 79999999 7777665533211 1 001 1222 4444322
Q ss_pred CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEc
Q 016351 143 EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 143 ~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~ 182 (391)
...|+||.-.. ........++..+...++++.+++-
T Consensus 113 ~~aDlVIeaVp----e~~~~k~~v~~~l~~~~~~~~ii~s 148 (463)
T 1zcj_A 113 STVDLVVEAVF----EDMNLKKKVFAELSALCKPGAFLCT 148 (463)
T ss_dssp TTCSEEEECCC----SCHHHHHHHHHHHHHHSCTTCEEEE
T ss_pred CCCCEEEEcCC----CCHHHHHHHHHHHHhhCCCCeEEEe
Confidence 57899986331 1111235677777788888887764
|
| >3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=84.00 E-value=2.4 Score=37.39 Aligned_cols=73 Identities=21% Similarity=0.269 Sum_probs=52.1
Q ss_pred CCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC-----------
Q 016351 77 FQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL----------- 141 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~---l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~----------- 141 (391)
++++++|-.|++.|+ ++..+++.|+ +|+.++.+ +.++.+.+.++..+ .++.++..|+.+...
T Consensus 4 l~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~ 80 (257)
T 3imf_A 4 MKEKVVIITGGSSGMGKGMATRFAKEGA-RVVITGRTKEKLEEAKLEIEQFP--GQILTVQMDVRNTDDIQKMIEQIDEK 80 (257)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCCST--TCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 467899999988774 4566777788 79999998 66666555554333 459999999877421
Q ss_pred CCcccEEEEcc
Q 016351 142 PEKVDVIISEW 152 (391)
Q Consensus 142 ~~~~D~Ivse~ 152 (391)
-+++|++|.+.
T Consensus 81 ~g~id~lv~nA 91 (257)
T 3imf_A 81 FGRIDILINNA 91 (257)
T ss_dssp HSCCCEEEECC
T ss_pred cCCCCEEEECC
Confidence 04789999754
|
| >3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=83.75 E-value=3.3 Score=36.69 Aligned_cols=75 Identities=21% Similarity=0.294 Sum_probs=52.2
Q ss_pred CCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC-------CCCcc
Q 016351 77 FQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV-------LPEKV 145 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~---l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~-------~~~~~ 145 (391)
++++++|-.|++.|+ ++..+++.|+ +|+.++.+ +.++.+.+.+...+....+.++..|+.+.. .-+++
T Consensus 8 l~~k~~lVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~g~i 86 (267)
T 3t4x_A 8 LKGKTALVTGSTAGIGKAIATSLVAEGA-NVLINGRREENVNETIKEIRAQYPDAILQPVVADLGTEQGCQDVIEKYPKV 86 (267)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHHCTTCEEEEEECCTTSHHHHHHHHHHCCCC
T ss_pred cCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhCCCceEEEEecCCCCHHHHHHHHHhcCCC
Confidence 567899999988764 4566777788 79999998 655555554544433345888888887642 11478
Q ss_pred cEEEEcc
Q 016351 146 DVIISEW 152 (391)
Q Consensus 146 D~Ivse~ 152 (391)
|++|.+.
T Consensus 87 d~lv~nA 93 (267)
T 3t4x_A 87 DILINNL 93 (267)
T ss_dssp SEEEECC
T ss_pred CEEEECC
Confidence 9999753
|
| >1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=83.72 E-value=5.5 Score=35.28 Aligned_cols=74 Identities=18% Similarity=0.144 Sum_probs=51.0
Q ss_pred CCCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC----------
Q 016351 76 HFQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL---------- 141 (391)
Q Consensus 76 ~~~~~~VLDlGcGtG~---l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~---------- 141 (391)
...+++||-.|++.|+ ++..+++.|+ +|++++.+ ..++...+.++..+ .++.++.+|+.+...
T Consensus 28 ~l~~k~vlITGasggIG~~la~~L~~~G~-~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~~ 104 (272)
T 1yb1_A 28 SVTGEIVLITGAGHGIGRLTAYEFAKLKS-KLVLWDINKHGLEETAAKCKGLG--AKVHTFVVDCSNREDIYSSAKKVKA 104 (272)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEEcCHHHHHHHHHHHHhcC--CeEEEEEeeCCCHHHHHHHHHHHHH
Confidence 4567899999987663 3455666787 79999988 65555544454443 348999999877420
Q ss_pred -CCcccEEEEcc
Q 016351 142 -PEKVDVIISEW 152 (391)
Q Consensus 142 -~~~~D~Ivse~ 152 (391)
-+++|+||...
T Consensus 105 ~~g~iD~li~~A 116 (272)
T 1yb1_A 105 EIGDVSILVNNA 116 (272)
T ss_dssp HTCCCSEEEECC
T ss_pred HCCCCcEEEECC
Confidence 13789999743
|
| >3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=83.70 E-value=3.1 Score=37.01 Aligned_cols=72 Identities=21% Similarity=0.175 Sum_probs=51.9
Q ss_pred CCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC-----------C
Q 016351 78 QGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL-----------P 142 (391)
Q Consensus 78 ~~~~VLDlGcGtG~---l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~-----------~ 142 (391)
.++++|-.|++.|+ ++..+++.|+ +|+.++.+ +.++.+.+.++..+ .++.++..|+.+... -
T Consensus 3 ~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 79 (264)
T 3tfo_A 3 MDKVILITGASGGIGEGIARELGVAGA-KILLGARRQARIEAIATEIRDAG--GTALAQVLDVTDRHSVAAFAQAAVDTW 79 (264)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHTT--CEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCccHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 46789999998874 4566777788 79999998 66666655555544 348899999877421 1
Q ss_pred CcccEEEEcc
Q 016351 143 EKVDVIISEW 152 (391)
Q Consensus 143 ~~~D~Ivse~ 152 (391)
+++|++|.+.
T Consensus 80 g~iD~lVnnA 89 (264)
T 3tfo_A 80 GRIDVLVNNA 89 (264)
T ss_dssp SCCCEEEECC
T ss_pred CCCCEEEECC
Confidence 4789999753
|
| >3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=83.67 E-value=4.7 Score=35.90 Aligned_cols=74 Identities=22% Similarity=0.262 Sum_probs=52.5
Q ss_pred CCCCCEEEEECCcccH---HHHHHHHcCCCeEEEEec-------------h-HHHHHHHHHHHHcCCCCcEEEEEccccc
Q 016351 76 HFQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEA-------------T-KMSDHARTLVKANNLQDVVEVIEGSVED 138 (391)
Q Consensus 76 ~~~~~~VLDlGcGtG~---l~~~~a~~g~~~V~avD~-------------s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~ 138 (391)
.++++++|-.|++.|+ ++..+++.|+ +|+++|. + +.++.+.+.+...+ .++.++..|+.+
T Consensus 12 ~l~gk~~lVTGas~gIG~a~a~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~ 88 (280)
T 3pgx_A 12 SLQGRVAFITGAARGQGRSHAVRLAAEGA-DIIACDICAPVSASVTYAPASPEDLDETARLVEDQG--RKALTRVLDVRD 88 (280)
T ss_dssp TTTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHTTT--CCEEEEECCTTC
T ss_pred ccCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeccccccccccccccCHHHHHHHHHHHHhcC--CeEEEEEcCCCC
Confidence 4678999999998875 5666777888 7999987 5 45555555555444 348999999877
Q ss_pred CCC-----------CCcccEEEEcc
Q 016351 139 IVL-----------PEKVDVIISEW 152 (391)
Q Consensus 139 ~~~-----------~~~~D~Ivse~ 152 (391)
..- -+++|++|.+.
T Consensus 89 ~~~v~~~~~~~~~~~g~id~lvnnA 113 (280)
T 3pgx_A 89 DAALRELVADGMEQFGRLDVVVANA 113 (280)
T ss_dssp HHHHHHHHHHHHHHHCCCCEEEECC
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECC
Confidence 421 14789999853
|
| >4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=83.62 E-value=2.1 Score=38.49 Aligned_cols=75 Identities=19% Similarity=0.240 Sum_probs=48.9
Q ss_pred CCCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC----------
Q 016351 76 HFQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL---------- 141 (391)
Q Consensus 76 ~~~~~~VLDlGcGtG~---l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~---------- 141 (391)
..+++++|-.|++.|+ ++..+++.|+ +|+.++.+ +.++.+.+.+...+- ..+.++..|+.+..-
T Consensus 30 ~l~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~Dv~d~~~v~~~~~~~~~ 107 (281)
T 4dry_A 30 SGEGRIALVTGGGTGVGRGIAQALSAEGY-SVVITGRRPDVLDAAAGEIGGRTG-NIVRAVVCDVGDPDQVAALFAAVRA 107 (281)
T ss_dssp ----CEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHS-SCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCC-CeEEEEEcCCCCHHHHHHHHHHHHH
Confidence 3467899999988764 4566777788 79999998 655555444433322 236899999877521
Q ss_pred -CCcccEEEEcc
Q 016351 142 -PEKVDVIISEW 152 (391)
Q Consensus 142 -~~~~D~Ivse~ 152 (391)
-+++|++|.+.
T Consensus 108 ~~g~iD~lvnnA 119 (281)
T 4dry_A 108 EFARLDLLVNNA 119 (281)
T ss_dssp HHSCCSEEEECC
T ss_pred HcCCCCEEEECC
Confidence 14789999854
|
| >3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum} | Back alignment and structure |
|---|
Probab=83.61 E-value=3.2 Score=37.08 Aligned_cols=74 Identities=20% Similarity=0.210 Sum_probs=53.3
Q ss_pred CCCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC----------
Q 016351 76 HFQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL---------- 141 (391)
Q Consensus 76 ~~~~~~VLDlGcGtG~---l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~---------- 141 (391)
.+++++||-.|++.|+ ++..+++.|+ +|+.++.+ +.++...+.++..+ .++.++.+|+.+...
T Consensus 29 ~l~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~d~~~v~~~~~~~~~ 105 (276)
T 3r1i_A 29 DLSGKRALITGASTGIGKKVALAYAEAGA-QVAVAARHSDALQVVADEIAGVG--GKALPIRCDVTQPDQVRGMLDQMTG 105 (276)
T ss_dssp CCTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESSGGGGHHHHHHHHHTT--CCCEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEcCCCCHHHHHHHHHHHHH
Confidence 3567899999998874 4566777888 79999988 66665555555544 348899999877521
Q ss_pred -CCcccEEEEcc
Q 016351 142 -PEKVDVIISEW 152 (391)
Q Consensus 142 -~~~~D~Ivse~ 152 (391)
-+++|++|.+.
T Consensus 106 ~~g~iD~lvnnA 117 (276)
T 3r1i_A 106 ELGGIDIAVCNA 117 (276)
T ss_dssp HHSCCSEEEECC
T ss_pred HcCCCCEEEECC
Confidence 04789999853
|
| >4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=83.50 E-value=5.6 Score=35.51 Aligned_cols=74 Identities=12% Similarity=0.111 Sum_probs=52.2
Q ss_pred CCCCCEEEEECCcccH---HHHHHHHcCCCeEEEEec-h-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC---------
Q 016351 76 HFQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEA-T-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL--------- 141 (391)
Q Consensus 76 ~~~~~~VLDlGcGtG~---l~~~~a~~g~~~V~avD~-s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~--------- 141 (391)
...++++|-.|++.|+ ++..+++.|+ +|+.++. + +.++...+.+...+ .++.++.+|+.+...
T Consensus 26 ~~~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~ 102 (280)
T 4da9_A 26 QKARPVAIVTGGRRGIGLGIARALAASGF-DIAITGIGDAEGVAPVIAELSGLG--ARVIFLRADLADLSSHQATVDAVV 102 (280)
T ss_dssp CCCCCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCCHHHHHHHHHHHHHTT--CCEEEEECCTTSGGGHHHHHHHHH
T ss_pred ccCCCEEEEecCCCHHHHHHHHHHHHCCC-eEEEEeCCCHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHH
Confidence 4567899999998875 5666777888 7999986 4 54555444455444 349999999988531
Q ss_pred --CCcccEEEEcc
Q 016351 142 --PEKVDVIISEW 152 (391)
Q Consensus 142 --~~~~D~Ivse~ 152 (391)
-+++|++|.+.
T Consensus 103 ~~~g~iD~lvnnA 115 (280)
T 4da9_A 103 AEFGRIDCLVNNA 115 (280)
T ss_dssp HHHSCCCEEEEEC
T ss_pred HHcCCCCEEEECC
Confidence 03789999754
|
| >1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B* | Back alignment and structure |
|---|
Probab=83.46 E-value=1.5 Score=38.89 Aligned_cols=72 Identities=21% Similarity=0.300 Sum_probs=44.8
Q ss_pred CCEEEEECCcc-cH-HHHHHHHcCCCeEEEEechH--------------------HHHHHHHHHHHcCCCCcEEEEEccc
Q 016351 79 GKTVLDVGTGS-GI-LAIWSAQAGARKVYAVEATK--------------------MSDHARTLVKANNLQDVVEVIEGSV 136 (391)
Q Consensus 79 ~~~VLDlGcGt-G~-l~~~~a~~g~~~V~avD~s~--------------------~~~~a~~~~~~~~~~~~v~~i~~d~ 136 (391)
+++||-+|||. |. .+..+++.|..+++.+|.+. .++.+.+.+...+-.-+++.+..++
T Consensus 31 ~~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~v~~~~~~~ 110 (249)
T 1jw9_B 31 DSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRINPHIAITPVNALL 110 (249)
T ss_dssp HCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEECSCC
T ss_pred CCeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCCCcccccCCcccccChhhcCcHHHHHHHHHHHHHCCCcEEEEEeccC
Confidence 47899999985 43 45667788988999998762 3455555554432222356655544
Q ss_pred ccCC---CCCcccEEEE
Q 016351 137 EDIV---LPEKVDVIIS 150 (391)
Q Consensus 137 ~~~~---~~~~~D~Ivs 150 (391)
.+-. +-..+|+||.
T Consensus 111 ~~~~~~~~~~~~DvVi~ 127 (249)
T 1jw9_B 111 DDAELAALIAEHDLVLD 127 (249)
T ss_dssp CHHHHHHHHHTSSEEEE
T ss_pred CHhHHHHHHhCCCEEEE
Confidence 3211 1147999996
|
| >4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=83.37 E-value=3 Score=37.48 Aligned_cols=71 Identities=20% Similarity=0.256 Sum_probs=51.7
Q ss_pred CCCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC----------
Q 016351 76 HFQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL---------- 141 (391)
Q Consensus 76 ~~~~~~VLDlGcGtG~---l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~---------- 141 (391)
.++++++|--|+++|+ .+..+++.|+ +|+.+|.+ +.++.+.+.+ + .++..+.+|+.+..-
T Consensus 26 rL~gKvalVTGas~GIG~aiA~~la~~Ga-~V~i~~r~~~~l~~~~~~~---g--~~~~~~~~Dv~~~~~v~~~~~~~~~ 99 (273)
T 4fgs_A 26 RLNAKIAVITGATSGIGLAAAKRFVAEGA-RVFITGRRKDVLDAAIAEI---G--GGAVGIQADSANLAELDRLYEKVKA 99 (273)
T ss_dssp TTTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHH---C--TTCEEEECCTTCHHHHHHHHHHHHH
T ss_pred hhCCCEEEEeCcCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHc---C--CCeEEEEecCCCHHHHHHHHHHHHH
Confidence 3688999999999985 5677888899 79999999 6655443322 2 347888899877420
Q ss_pred -CCcccEEEEcc
Q 016351 142 -PEKVDVIISEW 152 (391)
Q Consensus 142 -~~~~D~Ivse~ 152 (391)
-++.|++|.+.
T Consensus 100 ~~G~iDiLVNNA 111 (273)
T 4fgs_A 100 EAGRIDVLFVNA 111 (273)
T ss_dssp HHSCEEEEEECC
T ss_pred HcCCCCEEEECC
Confidence 15799999754
|
| >1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=83.21 E-value=5.1 Score=35.37 Aligned_cols=75 Identities=24% Similarity=0.282 Sum_probs=50.5
Q ss_pred CCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC-----------
Q 016351 77 FQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL----------- 141 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~---l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~----------- 141 (391)
.+++++|-.|++.|+ ++..+++.|+ +|++++.+ +.++.+.+.+.......++.++.+|+.+...
T Consensus 11 l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~ 89 (267)
T 1iy8_A 11 FTDRVVLITGGGSGLGRATAVRLAAEGA-KLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTER 89 (267)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhcCCceEEEEEccCCCHHHHHHHHHHHHHH
Confidence 467899999988764 4566677788 79999988 6555444444333112348899999877421
Q ss_pred CCcccEEEEcc
Q 016351 142 PEKVDVIISEW 152 (391)
Q Consensus 142 ~~~~D~Ivse~ 152 (391)
-+++|++|.+.
T Consensus 90 ~g~id~lv~nA 100 (267)
T 1iy8_A 90 FGRIDGFFNNA 100 (267)
T ss_dssp HSCCSEEEECC
T ss_pred cCCCCEEEECC
Confidence 03689999853
|
| >2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=83.20 E-value=0.91 Score=42.81 Aligned_cols=99 Identities=16% Similarity=0.103 Sum_probs=51.3
Q ss_pred CCCCEEEEECCcc-cHHHH-HHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC-CCcccEEEEcc
Q 016351 77 FQGKTVLDVGTGS-GILAI-WSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL-PEKVDVIISEW 152 (391)
Q Consensus 77 ~~~~~VLDlGcGt-G~l~~-~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~-~~~~D~Ivse~ 152 (391)
.++++|+-+|+|. |.... .+...|+ +|+++|.+ ..++.+++. .+.. +.....+..++.. -..+|+|+...
T Consensus 164 l~~~~V~ViGaG~iG~~~a~~l~~~Ga-~V~~~d~~~~~~~~~~~~---~g~~--~~~~~~~~~~l~~~~~~~DvVi~~~ 237 (369)
T 2eez_A 164 VAPASVVILGGGTVGTNAAKIALGMGA-QVTILDVNHKRLQYLDDV---FGGR--VITLTATEANIKKSVQHADLLIGAV 237 (369)
T ss_dssp BCCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHH---TTTS--EEEEECCHHHHHHHHHHCSEEEECC
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHh---cCce--EEEecCCHHHHHHHHhCCCEEEECC
Confidence 4568999999964 44333 3334588 89999998 655544332 2321 3332222222211 14689998633
Q ss_pred ccccccCcchHHHHHHHHhccccCCeEEEccc
Q 016351 153 MGYFLLRESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 153 ~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~ 184 (391)
..... . ....+.+...+.++++|+++...
T Consensus 238 g~~~~--~-~~~li~~~~l~~mk~gg~iV~v~ 266 (369)
T 2eez_A 238 LVPGA--K-APKLVTRDMLSLMKEGAVIVDVA 266 (369)
T ss_dssp C----------CCSCHHHHTTSCTTCEEEECC
T ss_pred CCCcc--c-cchhHHHHHHHhhcCCCEEEEEe
Confidence 11100 0 00011234456678999877443
|
| >4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A | Back alignment and structure |
|---|
Probab=82.91 E-value=4.2 Score=35.85 Aligned_cols=75 Identities=17% Similarity=0.143 Sum_probs=53.4
Q ss_pred CCCCCEEEEECCcc--cH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC--------
Q 016351 76 HFQGKTVLDVGTGS--GI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL-------- 141 (391)
Q Consensus 76 ~~~~~~VLDlGcGt--G~---l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~-------- 141 (391)
.++++++|--|+++ |+ .+..+++.|+ +|+.++.+ +.++.+.+.++..+- .++.+++.|+.+..-
T Consensus 3 ~l~gK~alVTGaa~~~GIG~aiA~~la~~Ga-~Vvi~~r~~~~~~~~~~~~~~~~~-~~~~~~~~Dv~~~~~v~~~~~~~ 80 (256)
T 4fs3_A 3 NLENKTYVIMGIANKRSIAFGVAKVLDQLGA-KLVFTYRKERSRKELEKLLEQLNQ-PEAHLYQIDVQSDEEVINGFEQI 80 (256)
T ss_dssp CCTTCEEEEECCCSTTCHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHHGGGTC-SSCEEEECCTTCHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCchHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCC-CcEEEEEccCCCHHHHHHHHHHH
Confidence 46789999999643 43 5677888898 79999998 666666666655442 248889999877420
Q ss_pred ---CCcccEEEEcc
Q 016351 142 ---PEKVDVIISEW 152 (391)
Q Consensus 142 ---~~~~D~Ivse~ 152 (391)
-++.|+++.+.
T Consensus 81 ~~~~G~iD~lvnnA 94 (256)
T 4fs3_A 81 GKDVGNIDGVYHSI 94 (256)
T ss_dssp HHHHCCCSEEEECC
T ss_pred HHHhCCCCEEEecc
Confidence 15799998753
|
| >3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus musculus} PDB: 3av5_A* 3av6_A* | Back alignment and structure |
|---|
Probab=82.62 E-value=4.1 Score=44.84 Aligned_cols=68 Identities=24% Similarity=0.220 Sum_probs=47.8
Q ss_pred CCEEEEECCcccHHHHHHHHcCC-CeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccC---------------CC
Q 016351 79 GKTVLDVGTGSGILAIWSAQAGA-RKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDI---------------VL 141 (391)
Q Consensus 79 ~~~VLDlGcGtG~l~~~~a~~g~-~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~---------------~~ 141 (391)
..+++||-||.|.+++-+.++|. ..|.|+|++ .+++.-+.+. ++ ..++.+|+.++ .+
T Consensus 851 ~l~viDLFsG~GGlslGfe~AG~~~vv~avEid~~A~~ty~~N~-----p~-~~~~~~DI~~l~~~~~~gdi~~~~~~~l 924 (1330)
T 3av4_A 851 KLRTLDVFSGCGGLSEGFHQAGISETLWAIEMWDPAAQAFRLNN-----PG-TTVFTEDCNVLLKLVMAGEVTNSLGQRL 924 (1330)
T ss_dssp CEEEEEETCTTSHHHHHHHHTTSEEEEEEECCSHHHHHHHHHHC-----TT-SEEECSCHHHHHHHHTTTCSBCSSCCBC
T ss_pred CceEEecccCccHHHHHHHHCCCCceEEEEECCHHHHHHHHHhC-----CC-CcEeeccHHHHhHhhhccchhhhhhhhc
Confidence 46899999999999999999996 568999999 5555444432 12 45666665422 12
Q ss_pred C--CcccEEEEcc
Q 016351 142 P--EKVDVIISEW 152 (391)
Q Consensus 142 ~--~~~D~Ivse~ 152 (391)
+ +.+|+|+.-+
T Consensus 925 p~~~~vDvl~GGp 937 (1330)
T 3av4_A 925 PQKGDVEMLCGGP 937 (1330)
T ss_dssp CCTTTCSEEEECC
T ss_pred cccCccceEEecC
Confidence 2 4789999744
|
| >2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A* | Back alignment and structure |
|---|
Probab=82.59 E-value=6.1 Score=34.43 Aligned_cols=73 Identities=27% Similarity=0.238 Sum_probs=50.9
Q ss_pred CCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC-----------
Q 016351 77 FQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL----------- 141 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~---l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~----------- 141 (391)
..++++|-.|++.|+ ++..+++.|+ +|++++.+ +.++.+.+.+...+ .++.++..|+.+...
T Consensus 5 l~~k~~lVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~~~~~~~~~~~~~~~~ 81 (247)
T 2jah_A 5 LQGKVALITGASSGIGEATARALAAEGA-AVAIAARRVEKLRALGDELTAAG--AKVHVLELDVADRQGVDAAVASTVEA 81 (247)
T ss_dssp TTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHHHH
Confidence 457899999988764 4566677788 79999988 65555554454433 348999999877421
Q ss_pred CCcccEEEEcc
Q 016351 142 PEKVDVIISEW 152 (391)
Q Consensus 142 ~~~~D~Ivse~ 152 (391)
-+++|++|.+.
T Consensus 82 ~g~id~lv~nA 92 (247)
T 2jah_A 82 LGGLDILVNNA 92 (247)
T ss_dssp HSCCSEEEECC
T ss_pred cCCCCEEEECC
Confidence 04789999753
|
| >1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A* | Back alignment and structure |
|---|
Probab=82.59 E-value=6.3 Score=35.35 Aligned_cols=61 Identities=8% Similarity=0.066 Sum_probs=42.5
Q ss_pred CCCCEEEEECCcccH---HHHHHHHcCCCeEEEEe-ch-HHHHHHHHHHH-HcCCCCcEEEEEcccccCC
Q 016351 77 FQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVE-AT-KMSDHARTLVK-ANNLQDVVEVIEGSVEDIV 140 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~---l~~~~a~~g~~~V~avD-~s-~~~~~a~~~~~-~~~~~~~v~~i~~d~~~~~ 140 (391)
.+++++|-.|++.|+ ++..+++.|+ +|+.++ .+ +.++.+.+.+. ..+ .++.++..|+.+..
T Consensus 7 l~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~~r~~~~~~~~~~~l~~~~~--~~~~~~~~Dl~~~~ 73 (291)
T 1e7w_A 7 PTVPVALVTGAAKRLGRSIAEGLHAEGY-AVCLHYHRSAAEANALSATLNARRP--NSAITVQADLSNVA 73 (291)
T ss_dssp -CCCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHHST--TCEEEEECCCSSSC
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEcCCCHHHHHHHHHHHhhhcC--CeeEEEEeecCCcc
Confidence 467889999988774 4556677788 799999 88 55555444443 333 34899999988754
|
| >3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=82.55 E-value=4 Score=36.01 Aligned_cols=75 Identities=24% Similarity=0.231 Sum_probs=53.2
Q ss_pred CCCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC----------
Q 016351 76 HFQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL---------- 141 (391)
Q Consensus 76 ~~~~~~VLDlGcGtG~---l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~---------- 141 (391)
..+++++|-.|++.|+ ++..+++.|+ +|+.++.+ +.++.+.+.++..+- .++.++..|+.+...
T Consensus 7 ~l~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~~Dv~~~~~v~~~~~~~~~ 84 (262)
T 3pk0_A 7 DLQGRSVVVTGGTKGIGRGIATVFARAGA-NVAVAGRSTADIDACVADLDQLGS-GKVIGVQTDVSDRAQCDALAGRAVE 84 (262)
T ss_dssp CCTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTSS-SCEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhCC-CcEEEEEcCCCCHHHHHHHHHHHHH
Confidence 3567899999988774 4566777788 79999998 666655555554432 348999999877421
Q ss_pred -CCcccEEEEcc
Q 016351 142 -PEKVDVIISEW 152 (391)
Q Consensus 142 -~~~~D~Ivse~ 152 (391)
-+++|++|.+.
T Consensus 85 ~~g~id~lvnnA 96 (262)
T 3pk0_A 85 EFGGIDVVCANA 96 (262)
T ss_dssp HHSCCSEEEECC
T ss_pred HhCCCCEEEECC
Confidence 04789999753
|
| >1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A | Back alignment and structure |
|---|
Probab=82.37 E-value=0.87 Score=42.07 Aligned_cols=58 Identities=22% Similarity=0.267 Sum_probs=40.0
Q ss_pred CcEEEE-EcccccC--CCC-CcccEEEEcccccccc------Cc---chHHHHHHHHhccccCCeEEEcccc
Q 016351 127 DVVEVI-EGSVEDI--VLP-EKVDVIISEWMGYFLL------RE---SMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 127 ~~v~~i-~~d~~~~--~~~-~~~D~Ivse~~~~~~~------~e---~~l~~~l~~~~~~L~~gG~ii~~~~ 185 (391)
...+++ ++|..+. .++ +++|+|++++. |... .+ ..+...+..+.++|+|+|.++....
T Consensus 37 ~~~~l~i~gD~l~~L~~l~~~svDlI~tDPP-Y~~~~d~~~~~~~~~~~~~~~l~~~~rvLk~~G~i~i~~~ 107 (319)
T 1eg2_A 37 TTRHVYDVCDCLDTLAKLPDDSVQLIICDPP-YNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIFGG 107 (319)
T ss_dssp CEEEEEEECCHHHHHHTSCTTCEEEEEECCC-SBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred ccceEEECCcHHHHHHhCccCCcCEEEECCC-CCCCCCCccCHHHHHHHHHHHHHHHHHHcCCCeEEEEEcC
Confidence 346788 9998763 233 68999999984 3222 11 1345667778999999999886544
|
| >3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=82.16 E-value=3.8 Score=36.78 Aligned_cols=74 Identities=18% Similarity=0.161 Sum_probs=51.5
Q ss_pred CCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccC-CC----------
Q 016351 77 FQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDI-VL---------- 141 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~---l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~-~~---------- 141 (391)
.++++||-.|++.|+ ++..+++.|+ +|++++.+ ..++.+.+.+...+- .++.++..|+.+. ..
T Consensus 10 ~~~k~vlITGas~GIG~~~a~~L~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~~Dl~~~~~~v~~~~~~~~~ 87 (311)
T 3o26_A 10 TKRRCAVVTGGNKGIGFEICKQLSSNGI-MVVLTCRDVTKGHEAVEKLKNSNH-ENVVFHQLDVTDPIATMSSLADFIKT 87 (311)
T ss_dssp --CCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTTC-CSEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCcEEEEecCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCC-CceEEEEccCCCcHHHHHHHHHHHHH
Confidence 356889999988774 4566677788 79999998 655555555554432 3599999999875 20
Q ss_pred -CCcccEEEEcc
Q 016351 142 -PEKVDVIISEW 152 (391)
Q Consensus 142 -~~~~D~Ivse~ 152 (391)
-+++|++|.+.
T Consensus 88 ~~g~iD~lv~nA 99 (311)
T 3o26_A 88 HFGKLDILVNNA 99 (311)
T ss_dssp HHSSCCEEEECC
T ss_pred hCCCCCEEEECC
Confidence 14799999854
|
| >3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans} | Back alignment and structure |
|---|
Probab=82.15 E-value=6.3 Score=34.34 Aligned_cols=73 Identities=18% Similarity=0.229 Sum_probs=49.7
Q ss_pred CCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC-----------
Q 016351 77 FQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL----------- 141 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~---l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~----------- 141 (391)
.++++||-.|++.|+ ++..+++.|+ +|++++.+ ..++...+.++..+ .++.++.+|+.+...
T Consensus 11 l~~k~vlItGasggiG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~ 87 (260)
T 3awd_A 11 LDNRVAIVTGGAQNIGLACVTALAEAGA-RVIIADLDEAMATKAVEDLRMEG--HDVSSVVMDVTNTESVQNAVRSVHEQ 87 (260)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC--CceEEEEecCCCHHHHHHHHHHHHHH
Confidence 467899999987653 4455666787 79999988 55554444444433 348999999877421
Q ss_pred CCcccEEEEcc
Q 016351 142 PEKVDVIISEW 152 (391)
Q Consensus 142 ~~~~D~Ivse~ 152 (391)
-+++|++|...
T Consensus 88 ~~~id~vi~~A 98 (260)
T 3awd_A 88 EGRVDILVACA 98 (260)
T ss_dssp HSCCCEEEECC
T ss_pred cCCCCEEEECC
Confidence 03689999743
|
| >3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=82.12 E-value=4 Score=35.51 Aligned_cols=71 Identities=21% Similarity=0.270 Sum_probs=49.6
Q ss_pred CCCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC-------CCCc
Q 016351 76 HFQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV-------LPEK 144 (391)
Q Consensus 76 ~~~~~~VLDlGcGtG~---l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~-------~~~~ 144 (391)
..++++||-.|++.|+ ++..+++.|+ +|+.++.+ +.++...+... .++.++..|+.+.. .-++
T Consensus 11 ~~~~k~vlVTGas~gIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~~~~~~~~~~~ 84 (249)
T 3f9i_A 11 DLTGKTSLITGASSGIGSAIARLLHKLGS-KVIISGSNEEKLKSLGNALK-----DNYTIEVCNLANKEECSNLISKTSN 84 (249)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHC-----SSEEEEECCTTSHHHHHHHHHTCSC
T ss_pred cCCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHhc-----cCccEEEcCCCCHHHHHHHHHhcCC
Confidence 4567899999998774 4566777787 79999998 65554433332 34889999987642 1147
Q ss_pred ccEEEEcc
Q 016351 145 VDVIISEW 152 (391)
Q Consensus 145 ~D~Ivse~ 152 (391)
+|++|...
T Consensus 85 id~li~~A 92 (249)
T 3f9i_A 85 LDILVCNA 92 (249)
T ss_dssp CSEEEECC
T ss_pred CCEEEECC
Confidence 89999753
|
| >3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=82.08 E-value=3.6 Score=36.60 Aligned_cols=73 Identities=19% Similarity=0.196 Sum_probs=52.3
Q ss_pred CCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC-----------
Q 016351 77 FQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL----------- 141 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~---l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~----------- 141 (391)
+++++||-.|++.|+ ++..+++.|+ +|++++.+ +.++...+.++..+. ++.++..|+.+...
T Consensus 26 l~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~Dv~d~~~v~~~~~~~~~~ 102 (270)
T 3ftp_A 26 LDKQVAIVTGASRGIGRAIALELARRGA-MVIGTATTEAGAEGIGAAFKQAGL--EGRGAVLNVNDATAVDALVESTLKE 102 (270)
T ss_dssp TTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHHTC--CCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCC--cEEEEEEeCCCHHHHHHHHHHHHHH
Confidence 567899999988774 4566777888 79999998 666655555555443 37888899877421
Q ss_pred CCcccEEEEcc
Q 016351 142 PEKVDVIISEW 152 (391)
Q Consensus 142 ~~~~D~Ivse~ 152 (391)
-++.|++|.+.
T Consensus 103 ~g~iD~lvnnA 113 (270)
T 3ftp_A 103 FGALNVLVNNA 113 (270)
T ss_dssp HSCCCEEEECC
T ss_pred cCCCCEEEECC
Confidence 04789999754
|
| >4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A* | Back alignment and structure |
|---|
Probab=82.08 E-value=4.3 Score=36.40 Aligned_cols=97 Identities=14% Similarity=0.145 Sum_probs=59.0
Q ss_pred CEEEEECCcc-c-HHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHc---------CCC--------CcEEEEEcccccC
Q 016351 80 KTVLDVGTGS-G-ILAIWSAQAGARKVYAVEAT-KMSDHARTLVKAN---------NLQ--------DVVEVIEGSVEDI 139 (391)
Q Consensus 80 ~~VLDlGcGt-G-~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~---------~~~--------~~v~~i~~d~~~~ 139 (391)
++|.-||+|+ | .++..++++|. +|+.+|.+ +.++.+++.+... ++. .++++ ..|..+.
T Consensus 5 ~kV~VIGaG~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~-~~~~~~~ 82 (283)
T 4e12_A 5 TNVTVLGTGVLGSQIAFQTAFHGF-AVTAYDINTDALDAAKKRFEGLAAVYEKEVAGAADGAAQKALGGIRY-SDDLAQA 82 (283)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSHHHHHHHHHHHHHHHHHHHHHSTTCTTTHHHHHHHHCEE-ESCHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHcCeEE-eCCHHHH
Confidence 5788899987 3 35666777888 79999999 7777666543211 111 11232 2333321
Q ss_pred CCCCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEccc
Q 016351 140 VLPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 140 ~~~~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~ 184 (391)
-...|+||... .........++..+...++++.+++-..
T Consensus 83 --~~~aDlVi~av----~~~~~~~~~v~~~l~~~~~~~~il~s~t 121 (283)
T 4e12_A 83 --VKDADLVIEAV----PESLDLKRDIYTKLGELAPAKTIFATNS 121 (283)
T ss_dssp --TTTCSEEEECC----CSCHHHHHHHHHHHHHHSCTTCEEEECC
T ss_pred --hccCCEEEEec----cCcHHHHHHHHHHHHhhCCCCcEEEECC
Confidence 15689998632 1111245567778888889988776433
|
| >1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52 | Back alignment and structure |
|---|
Probab=82.07 E-value=6.6 Score=37.15 Aligned_cols=66 Identities=23% Similarity=0.304 Sum_probs=40.7
Q ss_pred CCEEEEECCcccHHHHHHHHc--------CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEE
Q 016351 79 GKTVLDVGTGSGILAIWSAQA--------GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVII 149 (391)
Q Consensus 79 ~~~VLDlGcGtG~l~~~~a~~--------g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~~D~Iv 149 (391)
...|+|+|+|+|.|+.-+.+. ...+++.||+| ...+.-++.++.. ++|.+. .++.+++ ...-+|+
T Consensus 81 ~~~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~Sp~Lr~~Q~~~L~~~---~~v~W~-~~l~~lp--~~~~~vi 154 (387)
T 1zkd_A 81 TLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLAGI---RNIHWH-DSFEDVP--EGPAVIL 154 (387)
T ss_dssp SEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHSTTC---SSEEEE-SSGGGSC--CSSEEEE
T ss_pred CcEEEEECCCcchHHHHHHHHHHhCCccccccEEEEEecCHHHHHHHHHHhcCC---CCeEEe-CChhhcC--CCCeEEE
Confidence 457999999999997766543 12279999999 5544444333322 247765 3444443 2344666
Q ss_pred E
Q 016351 150 S 150 (391)
Q Consensus 150 s 150 (391)
+
T Consensus 155 A 155 (387)
T 1zkd_A 155 A 155 (387)
T ss_dssp E
T ss_pred e
Confidence 6
|
| >4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum} | Back alignment and structure |
|---|
Probab=82.04 E-value=3.2 Score=37.06 Aligned_cols=73 Identities=22% Similarity=0.297 Sum_probs=52.4
Q ss_pred CCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC----------C
Q 016351 77 FQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL----------P 142 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~---l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~----------~ 142 (391)
++++++|-.|++.|+ ++..+++.|+ +|+.++.+ +.++.+.+.+...+ .++.++.+|+.+... .
T Consensus 31 l~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~~~~~~~~~~~~ 107 (275)
T 4imr_A 31 LRGRTALVTGSSRGIGAAIAEGLAGAGA-HVILHGVKPGSTAAVQQRIIASG--GTAQELAGDLSEAGAGTDLIERAEAI 107 (275)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSTTTTHHHHHHHHHTT--CCEEEEECCTTSTTHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcC--CeEEEEEecCCCHHHHHHHHHHHHHh
Confidence 567899999988774 4566777788 79999988 65555555555444 348999999887531 0
Q ss_pred CcccEEEEcc
Q 016351 143 EKVDVIISEW 152 (391)
Q Consensus 143 ~~~D~Ivse~ 152 (391)
+++|++|.+.
T Consensus 108 g~iD~lvnnA 117 (275)
T 4imr_A 108 APVDILVINA 117 (275)
T ss_dssp SCCCEEEECC
T ss_pred CCCCEEEECC
Confidence 4789999754
|
| >3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A* | Back alignment and structure |
|---|
Probab=81.94 E-value=5.7 Score=35.68 Aligned_cols=74 Identities=20% Similarity=0.326 Sum_probs=52.1
Q ss_pred CCCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-H-HHHHHHHHHHHcCCCCcEEEEEcccccCCC---------
Q 016351 76 HFQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-K-MSDHARTLVKANNLQDVVEVIEGSVEDIVL--------- 141 (391)
Q Consensus 76 ~~~~~~VLDlGcGtG~---l~~~~a~~g~~~V~avD~s-~-~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~--------- 141 (391)
.+++++||-.|++.|+ ++..+++.|+ +|+.++.+ . ..+.+.+..+..+ .++.++.+|+.+...
T Consensus 44 ~l~gk~vlVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~ 120 (291)
T 3ijr_A 44 KLKGKNVLITGGDSGIGRAVSIAFAKEGA-NIAIAYLDEEGDANETKQYVEKEG--VKCVLLPGDLSDEQHCKDIVQETV 120 (291)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHTTT--CCEEEEESCTTSHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCchHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHH
Confidence 3567899999998874 4566777788 79999987 4 4445555555444 348999999877421
Q ss_pred --CCcccEEEEcc
Q 016351 142 --PEKVDVIISEW 152 (391)
Q Consensus 142 --~~~~D~Ivse~ 152 (391)
-+++|++|.+.
T Consensus 121 ~~~g~iD~lvnnA 133 (291)
T 3ijr_A 121 RQLGSLNILVNNV 133 (291)
T ss_dssp HHHSSCCEEEECC
T ss_pred HHcCCCCEEEECC
Confidence 14789999753
|
| >3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=81.86 E-value=6.3 Score=34.99 Aligned_cols=74 Identities=22% Similarity=0.301 Sum_probs=51.6
Q ss_pred CCCCCEEEEECCcccH---HHHHHHHcCCCeEEEEec-------------h-HHHHHHHHHHHHcCCCCcEEEEEccccc
Q 016351 76 HFQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEA-------------T-KMSDHARTLVKANNLQDVVEVIEGSVED 138 (391)
Q Consensus 76 ~~~~~~VLDlGcGtG~---l~~~~a~~g~~~V~avD~-------------s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~ 138 (391)
.++++++|-.|++.|+ ++..+++.|+ +|+++|. + +.++.+.+.....+ .++.++..|+.+
T Consensus 8 ~l~~k~~lVTGas~GIG~a~a~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~ 84 (277)
T 3tsc_A 8 KLEGRVAFITGAARGQGRAHAVRMAAEGA-DIIAVDIAGKLPSCVPYDPASPDDLSETVRLVEAAN--RRIVAAVVDTRD 84 (277)
T ss_dssp TTTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHHTT--CCEEEEECCTTC
T ss_pred ccCCCEEEEECCccHHHHHHHHHHHHcCC-EEEEEeccccccccccccccCHHHHHHHHHHHHhcC--CeEEEEECCCCC
Confidence 3567899999998875 4666777888 7999987 4 44444444444443 348999999877
Q ss_pred CCC-----------CCcccEEEEcc
Q 016351 139 IVL-----------PEKVDVIISEW 152 (391)
Q Consensus 139 ~~~-----------~~~~D~Ivse~ 152 (391)
..- -+++|++|.+.
T Consensus 85 ~~~v~~~~~~~~~~~g~id~lvnnA 109 (277)
T 3tsc_A 85 FDRLRKVVDDGVAALGRLDIIVANA 109 (277)
T ss_dssp HHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECC
Confidence 521 14789999854
|
| >3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A* | Back alignment and structure |
|---|
Probab=81.85 E-value=7.2 Score=35.64 Aligned_cols=89 Identities=18% Similarity=0.163 Sum_probs=55.1
Q ss_pred CEEEEECCcc--cHHHHHHHHcCCC-eEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEccccc
Q 016351 80 KTVLDVGTGS--GILAIWSAQAGAR-KVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMGY 155 (391)
Q Consensus 80 ~~VLDlGcGt--G~l~~~~a~~g~~-~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~~D~Ivse~~~~ 155 (391)
.+|.-||+|. +.++..+++.|.. +|+++|.+ +.++.++ ..|..+ -...+..++ .-...|+||.-...
T Consensus 34 ~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~----~~G~~~---~~~~~~~~~-~~~~aDvVilavp~- 104 (314)
T 3ggo_A 34 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAV----DLGIID---EGTTSIAKV-EDFSPDFVMLSSPV- 104 (314)
T ss_dssp SEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHH----HTTSCS---EEESCTTGG-GGGCCSEEEECSCG-
T ss_pred CEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHH----HCCCcc---hhcCCHHHH-hhccCCEEEEeCCH-
Confidence 6899999986 3456667777763 79999999 6555543 334321 122333330 12568998863211
Q ss_pred cccCcchHHHHHHHHhccccCCeEEEc
Q 016351 156 FLLRESMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 156 ~~~~e~~l~~~l~~~~~~L~~gG~ii~ 182 (391)
.....++..+...|+++.+++-
T Consensus 105 -----~~~~~vl~~l~~~l~~~~iv~d 126 (314)
T 3ggo_A 105 -----RTFREIAKKLSYILSEDATVTD 126 (314)
T ss_dssp -----GGHHHHHHHHHHHSCTTCEEEE
T ss_pred -----HHHHHHHHHHhhccCCCcEEEE
Confidence 1345677777788888886653
|
| >1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=81.81 E-value=6.3 Score=34.95 Aligned_cols=73 Identities=22% Similarity=0.271 Sum_probs=51.1
Q ss_pred CCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC------------
Q 016351 77 FQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV------------ 140 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~---l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~------------ 140 (391)
.+++++|-.|++.|+ ++..+++.|+ +|++++.+ +.++.+.+.++..+ .++.++.+|+.+..
T Consensus 19 l~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~ 95 (273)
T 1ae1_A 19 LKGTTALVTGGSKGIGYAIVEELAGLGA-RVYTCSRNEKELDECLEIWREKG--LNVEGSVCDLLSRTERDKLMQTVAHV 95 (273)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCcchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC--CceEEEECCCCCHHHHHHHHHHHHHH
Confidence 467899999987764 4556677788 79999998 65555444444443 34889999987642
Q ss_pred CCCcccEEEEcc
Q 016351 141 LPEKVDVIISEW 152 (391)
Q Consensus 141 ~~~~~D~Ivse~ 152 (391)
+.+++|++|.+.
T Consensus 96 ~~g~id~lv~nA 107 (273)
T 1ae1_A 96 FDGKLNILVNNA 107 (273)
T ss_dssp TTSCCCEEEECC
T ss_pred cCCCCcEEEECC
Confidence 115789999854
|
| >3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str} | Back alignment and structure |
|---|
Probab=81.57 E-value=0.65 Score=43.97 Aligned_cols=40 Identities=25% Similarity=0.469 Sum_probs=29.0
Q ss_pred CCCEEEEECCcc-cHHHHHHHH-cCCCeEEEEech-HHHHHHHH
Q 016351 78 QGKTVLDVGTGS-GILAIWSAQ-AGARKVYAVEAT-KMSDHART 118 (391)
Q Consensus 78 ~~~~VLDlGcGt-G~l~~~~a~-~g~~~V~avD~s-~~~~~a~~ 118 (391)
++.+|+-+|+|. |..+...++ .|+ +|+++|.+ ..++.+++
T Consensus 183 ~~~kV~ViG~G~iG~~aa~~a~~lGa-~V~v~D~~~~~l~~~~~ 225 (381)
T 3p2y_A 183 KPASALVLGVGVAGLQALATAKRLGA-KTTGYDVRPEVAEQVRS 225 (381)
T ss_dssp CCCEEEEESCSHHHHHHHHHHHHHTC-EEEEECSSGGGHHHHHH
T ss_pred CCCEEEEECchHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH
Confidence 578999999996 555544444 488 79999999 65555543
|
| >2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A* | Back alignment and structure |
|---|
Probab=81.52 E-value=6.3 Score=35.04 Aligned_cols=73 Identities=16% Similarity=0.166 Sum_probs=50.5
Q ss_pred CCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC-----------
Q 016351 77 FQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL----------- 141 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~---l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~----------- 141 (391)
+++++||-.|++.|+ ++..+++.|+ +|++++.+ +.++.+.+.++..+ .++.++.+|+.+...
T Consensus 20 l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~ 96 (277)
T 2rhc_B 20 QDSEVALVTGATSGIGLEIARRLGKEGL-RVFVCARGEEGLRTTLKELREAG--VEADGRTCDVRSVPEIEALVAAVVER 96 (277)
T ss_dssp TTSCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC--CceEEEECCCCCHHHHHHHHHHHHHH
Confidence 457899999988764 4556677788 79999998 65555444444443 348899999876420
Q ss_pred CCcccEEEEcc
Q 016351 142 PEKVDVIISEW 152 (391)
Q Consensus 142 ~~~~D~Ivse~ 152 (391)
-+++|++|...
T Consensus 97 ~g~iD~lv~~A 107 (277)
T 2rhc_B 97 YGPVDVLVNNA 107 (277)
T ss_dssp TCSCSEEEECC
T ss_pred hCCCCEEEECC
Confidence 14789999753
|
| >3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A* | Back alignment and structure |
|---|
Probab=81.38 E-value=7.1 Score=36.49 Aligned_cols=89 Identities=11% Similarity=0.035 Sum_probs=53.3
Q ss_pred CCCCEEEEECCc--ccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccC------CCCCccc
Q 016351 77 FQGKTVLDVGTG--SGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDI------VLPEKVD 146 (391)
Q Consensus 77 ~~~~~VLDlGcG--tG~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~------~~~~~~D 146 (391)
.++.+||-+|++ .|.++..+|++ |+ +|+++- + .-++.++ ..|.. .++...-.++ ..++.+|
T Consensus 163 ~~g~~VlV~Ga~G~vG~~a~qla~~~Ga-~Vi~~~-~~~~~~~~~----~lGa~---~vi~~~~~~~~~~v~~~t~g~~d 233 (371)
T 3gqv_A 163 SKPVYVLVYGGSTATATVTMQMLRLSGY-IPIATC-SPHNFDLAK----SRGAE---EVFDYRAPNLAQTIRTYTKNNLR 233 (371)
T ss_dssp SSCCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEE-CGGGHHHHH----HTTCS---EEEETTSTTHHHHHHHHTTTCCC
T ss_pred CCCcEEEEECCCcHHHHHHHHHHHHCCC-EEEEEe-CHHHHHHHH----HcCCc---EEEECCCchHHHHHHHHccCCcc
Confidence 577899999983 58888888876 77 788885 5 5455443 45543 2333221111 0124599
Q ss_pred EEEEccccccccCcchHHHHHHHHhccc-cCCeEEEcc
Q 016351 147 VIISEWMGYFLLRESMFDSVICARDRWL-KPTGVMYPS 183 (391)
Q Consensus 147 ~Ivse~~~~~~~~e~~l~~~l~~~~~~L-~~gG~ii~~ 183 (391)
+++-. ++. ...+....+.| +++|+++..
T Consensus 234 ~v~d~-~g~--------~~~~~~~~~~l~~~~G~iv~~ 262 (371)
T 3gqv_A 234 YALDC-ITN--------VESTTFCFAAIGRAGGHYVSL 262 (371)
T ss_dssp EEEES-SCS--------HHHHHHHHHHSCTTCEEEEES
T ss_pred EEEEC-CCc--------hHHHHHHHHHhhcCCCEEEEE
Confidence 99852 111 12344555667 689998754
|
| >3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A* | Back alignment and structure |
|---|
Probab=81.35 E-value=5 Score=36.41 Aligned_cols=74 Identities=22% Similarity=0.254 Sum_probs=47.8
Q ss_pred CCCCEEEEECCcc-cH-HHHHHHHcCCCeEEEEech-------------------HHHHHHHHHHHHcCCCCcEEEEEcc
Q 016351 77 FQGKTVLDVGTGS-GI-LAIWSAQAGARKVYAVEAT-------------------KMSDHARTLVKANNLQDVVEVIEGS 135 (391)
Q Consensus 77 ~~~~~VLDlGcGt-G~-l~~~~a~~g~~~V~avD~s-------------------~~~~~a~~~~~~~~~~~~v~~i~~d 135 (391)
+.+.+||-+|||. |. .+..++++|..+++.+|.+ ..++.|++.++..+-.-+|+.+..+
T Consensus 34 L~~~~VlVvGaGGlGs~va~~La~aGVG~i~lvD~D~Ve~sNL~Rq~~~~~diG~~Ka~aa~~~L~~iNP~v~v~~~~~~ 113 (292)
T 3h8v_A 34 IRTFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDKVELANMNRLFFQPHQAGLSKVQAAEHTLRNINPDVLFEVHNYN 113 (292)
T ss_dssp GGGCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBC------------CCTTSBHHHHHHHHHHHHCTTSEEEEECCC
T ss_pred HhCCeEEEECcCHHHHHHHHHHHHcCCCEEEEECCCccChhhcccccCChhhcCchHHHHHHHHHHhhCCCcEEEEeccc
Confidence 4568999999995 44 5677888999999999854 2344555555554433336666555
Q ss_pred cccC---C----------C--CCcccEEEE
Q 016351 136 VEDI---V----------L--PEKVDVIIS 150 (391)
Q Consensus 136 ~~~~---~----------~--~~~~D~Ivs 150 (391)
+... . + ...+|+|+.
T Consensus 114 l~~~~~~~~~~~~~~~~~l~~~~~~DlVid 143 (292)
T 3h8v_A 114 ITTVENFQHFMDRISNGGLEEGKPVDLVLS 143 (292)
T ss_dssp TTSHHHHHHHHHHHHHBSSSTTBCCSEEEE
T ss_pred CCcHHHHHHHhhhhcccccccCCCCCEEEE
Confidence 4321 0 1 147999995
|
| >1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=81.26 E-value=6.3 Score=34.64 Aligned_cols=73 Identities=21% Similarity=0.274 Sum_probs=50.9
Q ss_pred CCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC-----------
Q 016351 77 FQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL----------- 141 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~---l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~----------- 141 (391)
.+++++|-.|++.|+ ++..+++.|+ +|+.++.+ +.++.+.+.+...+ .++.++.+|+.+...
T Consensus 5 l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~ 81 (262)
T 1zem_A 5 FNGKVCLVTGAGGNIGLATALRLAEEGT-AIALLDMNREALEKAEASVREKG--VEARSYVCDVTSEEAVIGTVDSVVRD 81 (262)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTT--SCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHHH
Confidence 467899999998774 4556677788 79999988 65555544444433 348899999877421
Q ss_pred CCcccEEEEcc
Q 016351 142 PEKVDVIISEW 152 (391)
Q Consensus 142 ~~~~D~Ivse~ 152 (391)
-+++|++|.+.
T Consensus 82 ~g~id~lv~nA 92 (262)
T 1zem_A 82 FGKIDFLFNNA 92 (262)
T ss_dssp HSCCCEEEECC
T ss_pred hCCCCEEEECC
Confidence 04789999853
|
| >4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=81.17 E-value=4.9 Score=35.57 Aligned_cols=73 Identities=23% Similarity=0.226 Sum_probs=52.0
Q ss_pred CCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHH-cCCCCcEEEEEcccccCCC----------
Q 016351 77 FQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKA-NNLQDVVEVIEGSVEDIVL---------- 141 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~---l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~-~~~~~~v~~i~~d~~~~~~---------- 141 (391)
+++++||-.|++.|+ ++..+++.|+ +|+.++.+ +.++.+.+.+.. .+ .++.++..|+.+...
T Consensus 18 l~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~ 94 (266)
T 4egf_A 18 LDGKRALITGATKGIGADIARAFAAAGA-RLVLSGRDVSELDAARRALGEQFG--TDVHTVAIDLAEPDAPAELARRAAE 94 (266)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHC--CCEEEEECCTTSTTHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHH
Confidence 567899999998874 4666777788 79999998 655555444433 33 349999999988531
Q ss_pred -CCcccEEEEcc
Q 016351 142 -PEKVDVIISEW 152 (391)
Q Consensus 142 -~~~~D~Ivse~ 152 (391)
-+++|++|.+.
T Consensus 95 ~~g~id~lv~nA 106 (266)
T 4egf_A 95 AFGGLDVLVNNA 106 (266)
T ss_dssp HHTSCSEEEEEC
T ss_pred HcCCCCEEEECC
Confidence 04789999753
|
| >3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=81.11 E-value=8.2 Score=34.54 Aligned_cols=83 Identities=12% Similarity=0.100 Sum_probs=48.4
Q ss_pred HhHHHHHHH-HHhcCCCCCCCEEEEECCcc-cH-HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEccc
Q 016351 61 VRMDAYFNS-IFQNKHHFQGKTVLDVGTGS-GI-LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSV 136 (391)
Q Consensus 61 ~r~~~~~~~-i~~~~~~~~~~~VLDlGcGt-G~-l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~ 136 (391)
.....+.+. +.......+++++|-+|+|- |. .+..+++.|+++|+.++.+ +.++...+.+.. ..+..+ +.
T Consensus 101 TD~~G~~~~lL~~~~~~l~~k~~lvlGaGg~~~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~----~~~~~~--~~ 174 (272)
T 3pwz_A 101 FDGIGLLRDIEENLGEPLRNRRVLLLGAGGAVRGALLPFLQAGPSELVIANRDMAKALALRNELDH----SRLRIS--RY 174 (272)
T ss_dssp CHHHHHHHHHHTTSCCCCTTSEEEEECCSHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHCC----TTEEEE--CS
T ss_pred CCHHHHHHHHHHHcCCCccCCEEEEECccHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhcc----CCeeEe--eH
Confidence 345566666 54333345789999999972 22 2344566787789999888 533332222221 125544 23
Q ss_pred ccCCCCCcccEEEE
Q 016351 137 EDIVLPEKVDVIIS 150 (391)
Q Consensus 137 ~~~~~~~~~D~Ivs 150 (391)
.++.. ..+|+||+
T Consensus 175 ~~l~~-~~~DivIn 187 (272)
T 3pwz_A 175 EALEG-QSFDIVVN 187 (272)
T ss_dssp GGGTT-CCCSEEEE
T ss_pred HHhcc-cCCCEEEE
Confidence 33322 67999997
|
| >4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A | Back alignment and structure |
|---|
Probab=80.93 E-value=5.8 Score=35.11 Aligned_cols=74 Identities=22% Similarity=0.260 Sum_probs=52.6
Q ss_pred CCCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech--HHHHHHHHHHHHcCCCCcEEEEEcccccCCC---------
Q 016351 76 HFQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT--KMSDHARTLVKANNLQDVVEVIEGSVEDIVL--------- 141 (391)
Q Consensus 76 ~~~~~~VLDlGcGtG~---l~~~~a~~g~~~V~avD~s--~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~--------- 141 (391)
..++++||-.|++.|+ ++..+++.|+ +|+.++.+ +..+...+..+..+ .++.++..|+.+...
T Consensus 26 ~l~~k~vlITGas~gIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~v~~~~~~~~ 102 (271)
T 4iin_A 26 QFTGKNVLITGASKGIGAEIAKTLASMGL-KVWINYRSNAEVADALKNELEEKG--YKAAVIKFDAASESDFIEAIQTIV 102 (271)
T ss_dssp CCSCCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHH
T ss_pred ccCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCCHHHHHHHHHHHHhcC--CceEEEECCCCCHHHHHHHHHHHH
Confidence 3567899999998874 4566777788 79999884 55555555565554 348999999877421
Q ss_pred --CCcccEEEEcc
Q 016351 142 --PEKVDVIISEW 152 (391)
Q Consensus 142 --~~~~D~Ivse~ 152 (391)
.+++|++|...
T Consensus 103 ~~~g~id~li~nA 115 (271)
T 4iin_A 103 QSDGGLSYLVNNA 115 (271)
T ss_dssp HHHSSCCEEEECC
T ss_pred HhcCCCCEEEECC
Confidence 14789999753
|
| >3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=80.41 E-value=7.8 Score=37.57 Aligned_cols=98 Identities=14% Similarity=0.236 Sum_probs=59.8
Q ss_pred CEEEEECCcc--cHHHHHHHHcCCCeEEEEech-H-HHHHHHHHH---HHcC-CC--------CcEEEEEcccccCCCCC
Q 016351 80 KTVLDVGTGS--GILAIWSAQAGARKVYAVEAT-K-MSDHARTLV---KANN-LQ--------DVVEVIEGSVEDIVLPE 143 (391)
Q Consensus 80 ~~VLDlGcGt--G~l~~~~a~~g~~~V~avD~s-~-~~~~a~~~~---~~~~-~~--------~~v~~i~~d~~~~~~~~ 143 (391)
++|.-||+|+ +.++..++++|. .|+.+|.+ + .....++.. ...| +. .++++. .|...+ .
T Consensus 55 ~kVaVIGaG~MG~~IA~~la~aG~-~V~l~D~~~e~a~~~i~~~l~~~~~~G~l~~~~~~~~~~~i~~t-~dl~al---~ 129 (460)
T 3k6j_A 55 NSVAIIGGGTMGKAMAICFGLAGI-ETFLVVRNEQRCKQELEVMYAREKSFKRLNDKRIEKINANLKIT-SDFHKL---S 129 (460)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHTTEEEE-SCGGGC---T
T ss_pred CEEEEECCCHHHHHHHHHHHHCCC-eEEEEECcHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhcceEEe-CCHHHH---c
Confidence 6899999997 456778888888 79999999 5 122121111 1222 11 234443 343322 5
Q ss_pred cccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcccce
Q 016351 144 KVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHAR 186 (391)
Q Consensus 144 ~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~~~ 186 (391)
..|+||.-.. ........++..+...++|+.+++-...+
T Consensus 130 ~aDlVIeAVp----e~~~vk~~v~~~l~~~~~~~aIlasnTSs 168 (460)
T 3k6j_A 130 NCDLIVESVI----EDMKLKKELFANLENICKSTCIFGTNTSS 168 (460)
T ss_dssp TCSEEEECCC----SCHHHHHHHHHHHHTTSCTTCEEEECCSS
T ss_pred cCCEEEEcCC----CCHHHHHHHHHHHHhhCCCCCEEEecCCC
Confidence 7899986321 11123456788888999999988754444
|
| >2qhx_A Pteridine reductase 1; oxidoreductase, short-chain dehydrogenase/reductase, trypanosomatid, pterin salvage, drug resistance; HET: NAP FE1; 2.61A {Leishmania major} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=80.40 E-value=8 Score=35.44 Aligned_cols=61 Identities=8% Similarity=0.066 Sum_probs=42.4
Q ss_pred CCCCEEEEECCcccH---HHHHHHHcCCCeEEEEe-ch-HHHHHHHHHHH-HcCCCCcEEEEEcccccCC
Q 016351 77 FQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVE-AT-KMSDHARTLVK-ANNLQDVVEVIEGSVEDIV 140 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~---l~~~~a~~g~~~V~avD-~s-~~~~~a~~~~~-~~~~~~~v~~i~~d~~~~~ 140 (391)
.++++||-.|++.|+ ++..+++.|+ +|+.++ .+ +.++.+.+.+. ..+ .++.++.+|+.+..
T Consensus 44 l~~k~~lVTGas~GIG~aia~~La~~G~-~Vv~~~~r~~~~~~~~~~~l~~~~~--~~~~~~~~Dl~d~~ 110 (328)
T 2qhx_A 44 PTVPVALVTGAAKRLGRSIAEGLHAEGY-AVCLHYHRSAAEANALSATLNARRP--NSAITVQADLSNVA 110 (328)
T ss_dssp -CCCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHHST--TCEEEEECCCSSSC
T ss_pred cCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhhcC--CeEEEEEeeCCCch
Confidence 457889999988764 4556677788 799999 87 55555444443 333 34899999988754
|
| >4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum} | Back alignment and structure |
|---|
Probab=80.37 E-value=3.1 Score=37.11 Aligned_cols=74 Identities=19% Similarity=0.212 Sum_probs=53.2
Q ss_pred CCCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC----------
Q 016351 76 HFQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL---------- 141 (391)
Q Consensus 76 ~~~~~~VLDlGcGtG~---l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~---------- 141 (391)
.++++++|-.|++.|+ ++..+++.|+ +|+.++.+ +.++.+.+.++..+ .++.++.+|+.+...
T Consensus 23 ~l~gk~~lVTGas~gIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~ 99 (271)
T 4ibo_A 23 DLGGRTALVTGSSRGLGRAMAEGLAVAGA-RILINGTDPSRVAQTVQEFRNVG--HDAEAVAFDVTSESEIIEAFARLDE 99 (271)
T ss_dssp CCTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEECCSCHHHHHHHHHHHHHTT--CCEEECCCCTTCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHH
Confidence 3578899999988774 4666777788 79999998 66665555555544 348999999877521
Q ss_pred -CCcccEEEEcc
Q 016351 142 -PEKVDVIISEW 152 (391)
Q Consensus 142 -~~~~D~Ivse~ 152 (391)
-+++|++|.+.
T Consensus 100 ~~g~iD~lv~nA 111 (271)
T 4ibo_A 100 QGIDVDILVNNA 111 (271)
T ss_dssp HTCCCCEEEECC
T ss_pred HCCCCCEEEECC
Confidence 14789999853
|
| >4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A | Back alignment and structure |
|---|
Probab=80.33 E-value=6.1 Score=34.70 Aligned_cols=71 Identities=17% Similarity=0.243 Sum_probs=50.5
Q ss_pred CCCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC----------
Q 016351 76 HFQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL---------- 141 (391)
Q Consensus 76 ~~~~~~VLDlGcGtG~---l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~---------- 141 (391)
..+++++|-.|++.|+ ++..+++.|+ +|+.++.+ +.++...+.. ..++.++..|+.+...
T Consensus 5 ~l~gk~~lVTGas~gIG~a~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dv~~~~~v~~~~~~~~~ 78 (255)
T 4eso_A 5 NYQGKKAIVIGGTHGMGLATVRRLVEGGA-EVLLTGRNESNIARIREEF-----GPRVHALRSDIADLNEIAVLGAAAGQ 78 (255)
T ss_dssp TTTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHH-----GGGEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHh-----CCcceEEEccCCCHHHHHHHHHHHHH
Confidence 3567899999998875 4566777888 79999998 6554444333 2348999999877521
Q ss_pred -CCcccEEEEcc
Q 016351 142 -PEKVDVIISEW 152 (391)
Q Consensus 142 -~~~~D~Ivse~ 152 (391)
-+++|++|.+.
T Consensus 79 ~~g~id~lv~nA 90 (255)
T 4eso_A 79 TLGAIDLLHINA 90 (255)
T ss_dssp HHSSEEEEEECC
T ss_pred HhCCCCEEEECC
Confidence 14789998743
|
| >4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=80.23 E-value=0.81 Score=43.68 Aligned_cols=40 Identities=25% Similarity=0.410 Sum_probs=29.1
Q ss_pred CCCEEEEECCcc-cHHHHHHHH-cCCCeEEEEech-HHHHHHHH
Q 016351 78 QGKTVLDVGTGS-GILAIWSAQ-AGARKVYAVEAT-KMSDHART 118 (391)
Q Consensus 78 ~~~~VLDlGcGt-G~l~~~~a~-~g~~~V~avD~s-~~~~~a~~ 118 (391)
++.+|+-+|+|. |..+..+++ .|+ +|+++|.+ ..++.+++
T Consensus 189 ~~~kV~ViG~G~iG~~aa~~a~~lGa-~V~v~D~~~~~l~~~~~ 231 (405)
T 4dio_A 189 PAAKIFVMGAGVAGLQAIATARRLGA-VVSATDVRPAAKEQVAS 231 (405)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSTTHHHHHHH
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHH
Confidence 568999999996 555554444 488 79999999 65555543
|
| >2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A* | Back alignment and structure |
|---|
Probab=80.21 E-value=6.6 Score=34.45 Aligned_cols=73 Identities=22% Similarity=0.259 Sum_probs=50.5
Q ss_pred CCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC------------
Q 016351 77 FQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV------------ 140 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~---l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~------------ 140 (391)
.++++||-.|++.|+ ++..+++.|+ +|++++.+ +.++.+.+.+...+ .++.++.+|+.+..
T Consensus 7 l~~k~vlVTGas~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~ 83 (260)
T 2ae2_A 7 LEGCTALVTGGSRGIGYGIVEELASLGA-SVYTCSRNQKELNDCLTQWRSKG--FKVEASVCDLSSRSERQELMNTVANH 83 (260)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT--CEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 467899999987764 4556677788 79999988 65554444444433 34889999987742
Q ss_pred CCCcccEEEEcc
Q 016351 141 LPEKVDVIISEW 152 (391)
Q Consensus 141 ~~~~~D~Ivse~ 152 (391)
+.+++|++|...
T Consensus 84 ~~g~id~lv~~A 95 (260)
T 2ae2_A 84 FHGKLNILVNNA 95 (260)
T ss_dssp TTTCCCEEEECC
T ss_pred cCCCCCEEEECC
Confidence 115789999853
|
| >3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=80.20 E-value=4.7 Score=35.85 Aligned_cols=69 Identities=12% Similarity=0.155 Sum_probs=48.9
Q ss_pred CCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC----------CC
Q 016351 77 FQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV----------LP 142 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~---l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~----------~~ 142 (391)
.++++||-.|++.|+ ++..+++.|+ +|+.++.+ +.++.+.+.+ ..++.++..|+.+.. .-
T Consensus 28 l~~k~vlVTGas~GIG~aia~~l~~~G~-~Vi~~~r~~~~~~~~~~~~-----~~~~~~~~~Dl~~~~~v~~~~~~~~~~ 101 (281)
T 3ppi_A 28 FEGASAIVSGGAGGLGEATVRRLHADGL-GVVIADLAAEKGKALADEL-----GNRAEFVSTNVTSEDSVLAAIEAANQL 101 (281)
T ss_dssp GTTEEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHH-----CTTEEEEECCTTCHHHHHHHHHHHTTS
T ss_pred cCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHh-----CCceEEEEcCCCCHHHHHHHHHHHHHh
Confidence 467899999998874 4566777788 79999998 6554443333 245999999987742 11
Q ss_pred CcccEEEEc
Q 016351 143 EKVDVIISE 151 (391)
Q Consensus 143 ~~~D~Ivse 151 (391)
++.|++|..
T Consensus 102 ~~id~lv~~ 110 (281)
T 3ppi_A 102 GRLRYAVVA 110 (281)
T ss_dssp SEEEEEEEC
T ss_pred CCCCeEEEc
Confidence 478888875
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 391 | ||||
| d1g6q1_ | 328 | c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Ba | 3e-76 | |
| d1oria_ | 316 | c.66.1.6 (A:) Protein arginine N-methyltransferase | 4e-76 | |
| d2fyta1 | 311 | c.66.1.6 (A:238-548) Protein arginine N-methyltran | 2e-73 | |
| d1ri5a_ | 252 | c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransf | 2e-09 | |
| d2frna1 | 260 | c.66.1.47 (A:19-278) Hypothetical protein PH0793 { | 5e-09 | |
| d1xvaa_ | 292 | c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Ra | 1e-07 | |
| d1y8ca_ | 246 | c.66.1.43 (A:) Putative methyltransferase CAC2371 | 1e-07 | |
| d1l3ia_ | 186 | c.66.1.22 (A:) Precorrin-6Y methyltransferase (Cbi | 2e-07 | |
| d2esra1 | 152 | c.66.1.46 (A:28-179) Putative methyltransferase SP | 7e-07 | |
| d1wzna1 | 251 | c.66.1.43 (A:1-251) Hypothetical methyltransferase | 4e-06 | |
| d1ne2a_ | 197 | c.66.1.32 (A:) Hypothetical protein Ta1320 {Archae | 3e-05 | |
| d2i6ga1 | 198 | c.66.1.44 (A:1-198) Putative methyltransferase Teh | 3e-05 | |
| d1yb2a1 | 250 | c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {T | 5e-05 | |
| d2gh1a1 | 281 | c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bac | 5e-05 | |
| d2dula1 | 375 | c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tR | 6e-05 | |
| d1u2za_ | 406 | c.66.1.31 (A:) Catalytic, N-terminal domain of his | 1e-04 | |
| d1xxla_ | 234 | c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus | 2e-04 | |
| d1nkva_ | 245 | c.66.1.21 (A:) Hypothetical Protein YjhP {Escheric | 2e-04 | |
| d1pjza_ | 201 | c.66.1.36 (A:) Thiopurine S-methyltransferase {Pse | 3e-04 | |
| d2p7ia1 | 225 | c.66.1.41 (A:22-246) Hypothetical protein ECA1738 | 4e-04 | |
| d1wy7a1 | 201 | c.66.1.32 (A:4-204) Hypothetical protein PH1948 {A | 0.001 | |
| d2b25a1 | 324 | c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 | 0.001 | |
| d1vl5a_ | 231 | c.66.1.41 (A:) Hypothetical protein BH2331 {Bacill | 0.003 | |
| d2g72a1 | 263 | c.66.1.15 (A:18-280) Phenylethanolamine N-methyltr | 0.003 | |
| d2h00a1 | 250 | c.66.1.54 (A:5-254) Methyltransferase 10 domain co | 0.004 | |
| d1jqea_ | 280 | c.66.1.19 (A:) Histamine methyltransferase {Human | 0.004 |
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 328 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 237 bits (605), Expect = 3e-76
Identities = 102/332 (30%), Positives = 165/332 (49%), Gaps = 28/332 (8%)
Query: 43 YFCTYAFLYHQKEMLSDRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGAR 102
YF +Y +EML D VR +Y N+I QNK F+ K VLDVG G+GIL++++A+ GA+
Sbjct: 3 YFDSYDHYGIHEEMLQDTVRTLSYRNAIIQNKDLFKDKIVLDVGCGTGILSMFAAKHGAK 62
Query: 103 KVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVEDIVLPE-KVDVIISEWMGYFLLRES 161
V V+ + + + A+ LV+ N D + ++ G +ED+ LP KVD+IISEWMGYFLL ES
Sbjct: 63 HVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMGYFLLYES 122
Query: 162 MFDSVICARDRWLKPTGVMYPSHARMWVAPIRSGLGDQKQQDYEGALDDWYSFLKETKTY 221
M D+V+ ARD +L G+++P + +A + Q + L+ W
Sbjct: 123 MMDTVLYARDHYLVEGGLIFPDKCSIHLAGLED------SQYKDEKLNYWQDV------- 169
Query: 222 YGVDMSVLTKPFSEEQKKYYLQTSLWSNLHPDQVIGTAAVVKNIDCSTATVDDIREVRSK 281
YG D S L + + + V T+ + D +T + D+ +S
Sbjct: 170 YGFDYSPF--------VPLVLHEPIVDTVERNNVNTTSDKLIEFDLNTVKISDL-AFKSN 220
Query: 282 FLSSIRGEGTRLCGFSGWFDVHFRGSTEDPAQQEIELTTAPSTYNGTHWGQQVFLFRPSV 341
F + + + + G WFD+ F + +E +T P THW Q +F F +
Sbjct: 221 FKLTAKRQDM-INGIVTWFDIVFPAPKGK---RPVEFSTGPHAPY-THWKQTIFYFPDDL 275
Query: 342 RVSEGDDLNVSFSMTRSKENHRLLEVEFSCEI 373
GD + + +++N+R L ++ S +
Sbjct: 276 DAETGDTIEGELVCSPNEKNNRDLNIKISYKF 307
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 316 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 236 bits (603), Expect = 4e-76
Identities = 110/330 (33%), Positives = 176/330 (53%), Gaps = 30/330 (9%)
Query: 46 TYAFLYHQKEMLSDRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVY 105
+YA +EML D VR Y NS+F N+H F+ K VLDVG+G+GIL +++A+AGARKV
Sbjct: 1 SYAHFGIHEEMLKDEVRTLTYRNSMFHNRHLFKDKVVLDVGSGTGILCMFAAKAGARKVI 60
Query: 106 AVEATKMSDHARTLVKANNLQDVVEVIEGSVEDI-VLPEKVDVIISEWMGYFLLRESMFD 164
+E + +SD+A +VKAN L VV +I+G VE++ + EKVD+IISEWMGY L ESM +
Sbjct: 61 GIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGYCLFYESMLN 120
Query: 165 SVICARDRWLKPTGVMYPSHARMWVAPIRSGLGDQKQQDYEGALDDWYSFLKETKTYYGV 224
+V+ ARD+WL P G+++P A ++V I +Q + + W + YG
Sbjct: 121 TVLHARDKWLAPDGLIFPDRATLYVTAIED------RQYKDYKIHWW-------ENVYGF 167
Query: 225 DMSVLTKPFSEEQKKYYLQTSLWSNLHPDQVIGTAAVVKNIDCSTATVDDIREVRSKFLS 284
DMS + K ++ L + P Q++ A ++K +D T V+D S F
Sbjct: 168 DMSCI--------KDVAIKEPLVDVVDPKQLVTNACLIKEVDIYTVKVED-LTFTSPFCL 218
Query: 285 SIRGEGTRLCGFSGWFDVHFRGSTEDPAQQEIELTTAPSTYNGTHWGQQVFLFRPSVRVS 344
++ + +F++ F + +T+P + THW Q VF + V
Sbjct: 219 QVKRNDY-VHALVAYFNIEFTRCHKR-----TGFSTSPESPY-THWKQTVFYMEDYLTVK 271
Query: 345 EGDDLNVSFSMTRSKENHRLLEVEFSCEIR 374
G+++ + M + +N+R L+ + +
Sbjct: 272 TGEEIFGTIGMRPNAKNNRDLDFTIDLDFK 301
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} Length = 311 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Score = 229 bits (584), Expect = 2e-73
Identities = 101/330 (30%), Positives = 171/330 (51%), Gaps = 29/330 (8%)
Query: 44 FCTYAFLYHQKEMLSDRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARK 103
F +Y +EML D++R ++Y + I+QN H F+ K VLDVG G+GIL++++A+AGA+K
Sbjct: 1 FSSYGHYGIHEEMLKDKIRTESYRDFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAKK 60
Query: 104 VYAVEATKMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEK-VDVIISEWMGYFLLRESM 162
V V+ +++ A +++ N L+D + +I+G +E++ LP + VDVIISEWMGYFLL ESM
Sbjct: 61 VLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEWMGYFLLFESM 120
Query: 163 FDSVICARDRWLKPTGVMYPSHARMWVAPIRSGLGDQKQQDYEGALDDWYSFLKETKTYY 222
DSV+ A++++L G +YP + + + ++ + Y
Sbjct: 121 LDSVLYAKNKYLAKGGSVYPDICTISLVAVSD-------------VNKHADRIAFWDDVY 167
Query: 223 GVDMSVLTKPFSEEQKKYYLQTSLWSNLHPDQVIGTAAVVKNIDCSTATVDDIREVRSKF 282
G MS + K E ++ L P +I +K+IDC T ++ D+
Sbjct: 168 GFKMSCMKKAVIPE--------AVVEVLDPKTLISEPCGIKHIDCHTTSISDLEFSSDFT 219
Query: 283 LSSIRGEGTRLCGFSGWFDVHFRGSTEDPAQQEIELTTAPSTYNGTHWGQQVFLFRPSVR 342
L R + +G+FD++F + + + +T P + THW Q VFL
Sbjct: 220 LKITR--TSMCTAIAGYFDIYFEKNCHNR----VVFSTGPQSTK-THWKQTVFLLEKPFS 272
Query: 343 VSEGDDLNVSFSMTRSKENHRLLEVEFSCE 372
V G+ L ++ ++K++ R L V +
Sbjct: 273 VKAGEALKGKVTVHKNKKDPRSLTVTLTLN 302
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} Length = 252 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Score = 55.3 bits (132), Expect = 2e-09
Identities = 21/122 (17%), Positives = 38/122 (31%), Gaps = 4/122 (3%)
Query: 66 YFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVE-ATKMSDHARTLVKANN 124
+ + + +G +VLD+G G G + +AG + Y V+ A + AR +
Sbjct: 12 FIKACLIRLYTKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMK 71
Query: 125 LQDVVEVIEGSVEDIVLPEK---VDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMY 181
+ V + + Y D R L+P G
Sbjct: 72 RRFKVFFRAQDSYGRHMDLGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFI 131
Query: 182 PS 183
+
Sbjct: 132 MT 133
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} Length = 260 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Score = 54.4 bits (130), Expect = 5e-09
Identities = 21/127 (16%), Positives = 40/127 (31%), Gaps = 14/127 (11%)
Query: 62 RMDAYFNSIFQNKHH------FQGKTVLDVGTGSGILAIWSAQAGARKVYAVEATKMS-D 114
F+ + + V+D+ G G L++ A G KV A+E +
Sbjct: 85 VAKIMFSPANVKERVRMAKVAKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFK 144
Query: 115 HARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMGYFLLRESMFDSVICARDRWL 174
+ N ++D + D D I+ MGY + +
Sbjct: 145 FLVENIHLNKVEDRMSAYNMDNRDFPGENIADRIL---MGYVVRTHEFIPKAL----SIA 197
Query: 175 KPTGVMY 181
K +++
Sbjct: 198 KDGAIIH 204
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 292 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 50.3 bits (119), Expect = 1e-07
Identities = 25/154 (16%), Positives = 45/154 (29%), Gaps = 12/154 (7%)
Query: 43 YFCTYAFLYHQKEMLSDRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGAR 102
Y A Q + R R Y + VLDV G+G+ +I + G
Sbjct: 21 YADGEAARVWQLYIGDTRSRTAEYKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEEGFS 80
Query: 103 KVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVEDIV-------LPEKVDVIISEWMGY 155
+ KM +A + + + + + D +I +
Sbjct: 81 VTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAVICLGNSF 140
Query: 156 FLLRESMFDSVICAR-----DRWLKPTGVMYPSH 184
L +S D ++P G++ H
Sbjct: 141 AHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDH 174
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} Length = 246 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Score = 50.0 bits (118), Expect = 1e-07
Identities = 26/216 (12%), Positives = 63/216 (29%), Gaps = 17/216 (7%)
Query: 42 NYFCTYAFLYHQKEMLSDRVRMDAYFNSIFQ--NKHHFQGKTVLDVGTGSGILAIWSAQA 99
N + +A +Y +++ V + + I + +++ LD+ G+G L
Sbjct: 1 NCYNKFAHIYD--KLIRADVDYKKWSDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPK 58
Query: 100 GARKVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMGYFLLR 159
+ +M A ++ + + + + +++
Sbjct: 59 FKNTWAVDLSQEMLSEAENKFRSQG-LKPRLACQDISNLNINRKFDLITCCLDSTNYIID 117
Query: 160 ESMFDSVICARDRWLKPTGV----------MYPSHARMWVAPIRSGLGDQKQQDYEGALD 209
A LK GV + + + +E L
Sbjct: 118 SDDLKKYFKAVSNHLKEGGVFIFDINSYYKLSQVLGNNDFNYDDDEVFYYWENQFEDDLV 177
Query: 210 --DWYSFLKETKTYYGVDMSVLTKPFSEEQKKYYLQ 243
F+++ + Y D + + EE + YL+
Sbjct: 178 SMYISFFVRDGEFYKRFDEEHEERAYKEEDIEKYLK 213
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Score = 48.3 bits (114), Expect = 2e-07
Identities = 19/108 (17%), Positives = 38/108 (35%), Gaps = 7/108 (6%)
Query: 79 GKTVLDVGTGSGILAIWSAQAGARKVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVED 138
+DVG G+G + + A R + ++ + L D V ++EG +
Sbjct: 34 NDVAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPE 93
Query: 139 IVLP-EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHA 185
+ +D+ + G L ++ LKP G + +
Sbjct: 94 ALCKIPDIDIAVVGGSGGEL------QEILRIIKDKLKPGGRIIVTAI 135
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} Length = 152 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Score = 46.4 bits (109), Expect = 7e-07
Identities = 30/148 (20%), Positives = 50/148 (33%), Gaps = 10/148 (6%)
Query: 61 VRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEATKMSDHARTLV 120
VR A FN I +F G VLD+ GSG LAI + G VE + +
Sbjct: 1 VR-GAIFNMI---GPYFNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDN 56
Query: 121 KANNLQDVVEV---IEGSVEDIVLPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPT 177
+ +E L + D++ + + + A L
Sbjct: 57 IIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDPPYAKETIVATIE--ALAAKNLLSEQ 114
Query: 178 GVMYPSHARMWVAPIR-SGLGDQKQQDY 204
++ + + P + LG K++ Y
Sbjct: 115 VMVVCETDKTVLLPKEIATLGIWKEKIY 142
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 45.5 bits (106), Expect = 4e-06
Identities = 35/204 (17%), Positives = 64/204 (31%), Gaps = 7/204 (3%)
Query: 42 NYFCTYAFLYHQ--KEMLSDRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQA 99
+ A Y + + + IF+ + + VLD+ G+GI + A+
Sbjct: 3 ELYTLLAEYYDTIYRRRIERVKAEIDFVEEIFKEDAKREVRRVLDLACGTGIPTLELAE- 61
Query: 100 GARKVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMGYFLLR 159
+V ++ + KA +E ++G V +I + D + +
Sbjct: 62 RGYEVVGLDLHEEMLRVAR-RKAKERNLKIEFLQGDVLEIAFKNEFDAVTMFFSTIMYFD 120
Query: 160 ESMFDSVICARDRWLKPTGVMYPSHARMWVAPIRSGLGDQKQQDYEGAL--DDWYSFLKE 217
E + LKP GV W R G +Q E L DW
Sbjct: 121 EEDLRKLFSKVAEALKPGGVFITDFP-CWFYGGRDGPVVWNEQKGEEKLVIMDWREVEPA 179
Query: 218 TKTYYGVDMSVLTKPFSEEQKKYY 241
+ + + +P E +
Sbjct: 180 VQKLRFKRLVQILRPNGEVKAFLV 203
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 197 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 42.0 bits (98), Expect = 3e-05
Identities = 28/86 (32%), Positives = 37/86 (43%), Gaps = 7/86 (8%)
Query: 65 AYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEATKMSDHARTLVKANN 124
AYF N + G++V+D GTG+GILA S GA V A + + A K N
Sbjct: 35 AYFLIEIYNDGNIGGRSVIDAGTGNGILACGSYLLGAESVTAFD---IDPDAIETAKRNC 91
Query: 125 LQDVVEVIEGSVEDIVLPEKVDVIIS 150
V + V +I K D I
Sbjct: 92 --GGVNFMVADVSEI--SGKYDTWIM 113
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} Length = 198 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Score = 42.3 bits (98), Expect = 3e-05
Identities = 18/124 (14%), Positives = 45/124 (36%), Gaps = 2/124 (1%)
Query: 58 SDRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEATKMSDHAR 117
+++ + + + LD+G G+G +++ A G + +
Sbjct: 10 TEKYGLTRTHSDVLAAAKVVAPGRTLDLGCGNGRNSLYLAANGYDVTAWDKNPASMANLE 69
Query: 118 TLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPT 177
+ A L ++ + + + + D I+S + FL +++ + + R KP
Sbjct: 70 RIKAAEGLDNLQTDLV-DLNTLTFDGEYDFILSTVVMMFLEAQTIPGLIANMQ-RCTKPG 127
Query: 178 GVMY 181
G
Sbjct: 128 GYNL 131
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} Length = 250 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Score = 42.4 bits (99), Expect = 5e-05
Identities = 19/105 (18%), Positives = 37/105 (35%), Gaps = 11/105 (10%)
Query: 79 GKTVLDVGTGSGILAIWSAQA--GARKVYAVEATK-MSDHARTLVKANNLQDVVEVIEGS 135
G +L+VG GSG ++ + A G + VE + A + V
Sbjct: 86 GMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSD 145
Query: 136 VEDIVLPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVM 180
+ D + + D +I++ + + + +KP V
Sbjct: 146 IADFISDQMYDAVIADIPDPWNHVQKIA--------SMMKPGSVA 182
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Score = 42.2 bits (98), Expect = 5e-05
Identities = 24/182 (13%), Positives = 63/182 (34%), Gaps = 10/182 (5%)
Query: 49 FLYHQKEMLSDRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGAR--KVYA 106
+L + +++ + + N++++ + ++D G G G L + K
Sbjct: 1 YLKNTRDLYYNDDYVSFLVNTVWKIT---KPVHIVDYGCGYGYLGLVLMPLLPEGSKYTG 57
Query: 107 VEATKMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMGYFLLRESMFDSV 166
+++ + + D + + E + + I ++ + E+M +
Sbjct: 58 IDSGETLLAEARELFRLLPYDSEFLEGDATEIELNDKYDIAICHAFLLHMTTPETMLQKM 117
Query: 167 ICARDRWLKPTGVMYPSHARMWVAPIRSGLGDQKQQDYEGALDDWYSFLKETKTYYGVDM 226
I +K G + W++ + S L D ++Q L + G D
Sbjct: 118 I----HSVKKGGKIICFEPH-WISNMASYLLDGEKQSEFIQLGVLQKLFESDTQRNGKDG 172
Query: 227 SV 228
++
Sbjct: 173 NI 174
|
| >d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} Length = 375 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TRM1-like domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 species: Pyrococcus horikoshii [TaxId: 53953]
Score = 42.3 bits (99), Expect = 6e-05
Identities = 18/95 (18%), Positives = 38/95 (40%), Gaps = 6/95 (6%)
Query: 77 FQGKTVLDVGTGSGILAI-WSAQAGARKVYAVEATKMSDHARTLVKANNLQDVVEVIEGS 135
K VLD + +GI I ++ + A +V+ + +S+ A L+K N + + + S
Sbjct: 44 LNPKIVLDALSATGIRGIRFALETPAEEVWLND---ISEDAYELMKRNVMLNFDGELRES 100
Query: 136 VEDIVL--PEKVDVIISEWMGYFLLRESMFDSVIC 168
+L + + + + R F +
Sbjct: 101 KGRAILKGEKTIVINHDDANRLMAERHRYFHFIDL 135
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 406 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 41.6 bits (97), Expect = 1e-04
Identities = 24/162 (14%), Positives = 51/162 (31%), Gaps = 20/162 (12%)
Query: 79 GKTVLDVGTGSGILAIWSAQA-GARKVYAVE-ATKMSDHARTLVKANNLQD--------- 127
G T +D+G+G G + +A G + E SD + +
Sbjct: 217 GDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNN 276
Query: 128 -VVEVIEGSVEDIVLPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTG------VM 180
+ + V++ + E + + FL E + + + + K +
Sbjct: 277 VEFSLKKSFVDNNRVAELIPQCDVILVNNFLFDEDL-NKKVEKILQTAKVGCKIISLKSL 335
Query: 181 YPSHARMWVAPIRSGLGDQKQQDYEGALDDWYSFLKETKTYY 222
++ + + K Q Y+ +D S+ YY
Sbjct: 336 RSLTYQINFYNVENIFNRLKVQRYD-LKEDSVSWTHSGGEYY 376
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} Length = 234 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Score = 40.3 bits (93), Expect = 2e-04
Identities = 23/103 (22%), Positives = 36/103 (34%), Gaps = 3/103 (2%)
Query: 79 GKTVLDVGTGSGILAIWSAQAGARKVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVED 138
VLD+G G+G A+ + + V+ATK + + V +G+ E
Sbjct: 17 EHRVLDIGAGAGHTALAFSPYVQ-ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAES 75
Query: 139 IVLPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMY 181
+ P+ II Y S + R LK G
Sbjct: 76 LPFPDDSFDII--TCRYAAHHFSDVRKAVREVARVLKQDGRFL 116
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} Length = 245 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Score = 40.3 bits (93), Expect = 2e-04
Identities = 21/106 (19%), Positives = 36/106 (33%), Gaps = 4/106 (3%)
Query: 79 GKTVLDVGTGSGILAIWSAQAGARKVYAVEATKMSDHART-LVKANNLQDVVEVIEGSVE 137
G +LD+G+GSG + A+ ++ + + + + + V I
Sbjct: 34 GTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAA 93
Query: 138 DIVLPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183
V EK DV + F + LKP G+M
Sbjct: 94 GYVANEKCDVAACVGATWIA---GGFAGAEELLAQSLKPGGIMLIG 136
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} Length = 201 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Score = 39.3 bits (90), Expect = 3e-04
Identities = 14/142 (9%), Positives = 27/142 (19%), Gaps = 19/142 (13%)
Query: 52 HQKEMLSDRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEATK 111
HQ E+ + + + + G VL G W + G V A +
Sbjct: 1 HQSEV-------NKDLQQYWSSLNVVPGARVLVPLCGKSQDMSWLSGQGYHVVGAELSEA 53
Query: 112 MSDHARTLVKANNLQDVVE------------VIEGSVEDIVLPEKVDVIISEWMGYFLLR 159
+ T + L
Sbjct: 54 AVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARDIGHCAAFYDRAAMIALP 113
Query: 160 ESMFDSVICARDRWLKPTGVMY 181
M + + + +
Sbjct: 114 ADMRERYVQHLEALMPQACSGL 135
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} Length = 225 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Score = 39.1 bits (90), Expect = 4e-04
Identities = 22/190 (11%), Positives = 55/190 (28%), Gaps = 21/190 (11%)
Query: 74 KHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEATKMSDHARTLVKANNLQDVVEVIE 133
F+ +L++G+ G + + VE S+ A + + + +
Sbjct: 16 TPFFRPGNLLELGSFKGDFTSRLQEHFN-DITCVE---ASEEAISHAQGRLKDGITYIHS 71
Query: 134 GSVEDIVLPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS----HARMWV 189
+ + +++++ + + ++ D WL G ++ +A
Sbjct: 72 RFEDAQLPRRYDNIVLTHVLEHIDDPVALLK---RINDDWLAEGGRLFLVCPNANAVSRQ 128
Query: 190 APIRSGLGDQKQQDYEGALDDWYSFLKETKTYYG---------VDM-SVLTKPFSEEQKK 239
++ G+ E + T + K + Q
Sbjct: 129 IAVKMGIISHNSAVTEAEFAHGHRCTYALDTLERDASRAGLQVTYRSGIFFKALANFQWD 188
Query: 240 YYLQTSLWSN 249
LQT + S
Sbjct: 189 QILQTDILSK 198
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 201 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 37.5 bits (86), Expect = 0.001
Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 5/75 (6%)
Query: 77 FQGKTVLDVGTGSGILAIWSAQAGARKVYAVEATKMS-DHARTLVKANNLQDVVEVIEGS 135
+GK V D+G G+G+L+ + GA++V VE K + D + + +V G
Sbjct: 45 IEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKGKF--KVFIGD 102
Query: 136 VEDIVLPEKVDVIIS 150
V + +VD++I
Sbjct: 103 VSE--FNSRVDIVIM 115
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} Length = 324 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.2 bits (88), Expect = 0.001
Identities = 24/94 (25%), Positives = 42/94 (44%), Gaps = 10/94 (10%)
Query: 79 GKTVLDVGTGSGILAIWSAQAGAR--KVYAVEATK-MSDHARTLVKANNLQDVVEVIEGS 135
G TVL+ G+GSG ++++ ++A +V + E K D A+ K + +E
Sbjct: 99 GDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEE- 157
Query: 136 VEDIVLPEKVDVIISEWMG-YFLLRESMFDSVIC 168
P+ VD I + G ++ FD+V
Sbjct: 158 -----WPDNVDFIHKDISGATEDIKSLTFDAVAL 186
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Score = 36.9 bits (84), Expect = 0.003
Identities = 24/103 (23%), Positives = 38/103 (36%), Gaps = 3/103 (2%)
Query: 79 GKTVLDVGTGSGILAIWSAQAGARKVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVED 138
+ VLDV TG G +A A KV A + T+ N VE ++G E
Sbjct: 16 NEEVLDVATGGGHVANAFAPFVK-KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQ 74
Query: 139 IVLPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMY 181
+ ++ I++ + S + R LK G +
Sbjct: 75 MPFTDERFHIVTCRIAAHHFPN--PASFVSEAYRVLKKGGQLL 115
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} Length = 263 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.7 bits (84), Expect = 0.003
Identities = 13/149 (8%), Positives = 37/149 (24%), Gaps = 21/149 (14%)
Query: 77 FQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANN--------LQD 127
G+T++D+G+G + + SA + + + ++ Q
Sbjct: 53 VSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQH 112
Query: 128 VVEVIEGSVEDIVLPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHARM 187
+ ++ + + + + + A
Sbjct: 113 ACLIEGKGECWQDKERQLRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSP 172
Query: 188 WVAPIRSGLGDQKQQDYEGALDDWYSFLK 216
++ ALD + L+
Sbjct: 173 ------------DLASFQRALDHITTLLR 189
|
| >d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} Length = 250 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Methyltransferase 10 domain domain: Methyltransferase 10 domain containing protein METT10D species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.3 bits (83), Expect = 0.004
Identities = 20/160 (12%), Positives = 49/160 (30%), Gaps = 29/160 (18%)
Query: 73 NKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEATKMSDHARTL----VKANNLQDV 128
+ + +D+GTG+ + + AT++ D V+ NNL D+
Sbjct: 56 DSDKSTLRRGIDIGTGASCIYPLLGAT--LNGWYFLATEVDDMCFNYAKKNVEQNNLSDL 113
Query: 129 VEVIEGSVEDIVLP-------EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMY 181
++V++ + +++ D + + E+ + R P+ V
Sbjct: 114 IKVVKVPQKTLLMDALKEESEIIYDFCMCNPPFFANQLEAKGVNS--RNPRRPPPSSVNT 171
Query: 182 PSHARMWVAPIRSGLGDQKQQDYEGALDDWYSFLKETKTY 221
+ G L+ + ++
Sbjct: 172 GGITEIMAEG--------------GELEFVKRIIHDSLQL 197
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 280 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.1 bits (82), Expect = 0.004
Identities = 34/263 (12%), Positives = 70/263 (26%), Gaps = 41/263 (15%)
Query: 49 FLYHQKEMLSDRVRMDAYFNSIFQNKHHFQGK-TVLDVGTGSGILAIWSAQAGARKVYAV 107
FL H E + MD I + + +L +G G+G + + + V
Sbjct: 10 FLNHSTEHQCMQEFMDKKLPGIIGRIGDTKSEIKILSIGGGAGEIDLQILSKVQAQYPGV 69
Query: 108 EAT--------KMSDHARTLVKANNLQDVVEVIEGSVEDIVL---------PEKVDVIIS 150
+ + LV + + V+ +K D I
Sbjct: 70 CINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLEKKELQKWDFIHM 129
Query: 151 EWMGYFLLRESMFDSVICARDRWLKPTGVMY---PSHARMWVAPIR---SGLGDQKQQDY 204
M Y++ + + L M S + W + S Y
Sbjct: 130 IQMLYYV---KDIPATLKFFHSLLGTNAKMLIIVVSGSSGWDKLWKKYGSRFPQDDLCQY 186
Query: 205 EGALDDWYSFLKETKTYYGVDMSVLTKPFSEEQKKYYLQTSLWSNLHPDQVIGTAAVVKN 264
+ DD L G+ + + ++ + +L D + T
Sbjct: 187 ITS-DDLTQMLDNL----GLKYECYDLLSTMDISDCFIDGNENGDLLWDFLTETCNFNAT 241
Query: 265 IDCSTATVDDIREVRSKFLSSIR 287
++R++ ++
Sbjct: 242 APP---------DLRAELGKDLQ 255
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 391 | |||
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 100.0 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 100.0 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 100.0 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 99.8 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 99.78 | |
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 99.73 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 99.73 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 99.73 | |
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 99.71 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 99.7 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 99.69 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 99.67 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 99.66 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 99.66 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 99.62 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 99.62 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 99.62 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 99.61 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 99.59 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 99.57 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 99.56 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 99.56 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 99.56 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 99.56 | |
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.56 | |
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.55 | |
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 99.55 | |
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 99.53 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 99.52 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 99.5 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 99.49 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 99.47 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 99.46 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 99.46 | |
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 99.44 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 99.43 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 99.41 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 99.39 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 99.38 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 99.38 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 99.38 | |
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 99.37 | |
| d2fhpa1 | 182 | Putative methylase EF2452 {Enterococcus faecalis [ | 99.37 | |
| d2igta1 | 309 | Putative methyltransferase Atu0340 {Agrobacterium | 99.37 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 99.36 | |
| d1ws6a1 | 171 | Methyltransferase TTHA0928 {Thermus thermophilus [ | 99.36 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 99.35 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 99.34 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 99.33 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 99.33 | |
| d2fpoa1 | 183 | Methylase YhhF {Escherichia coli [TaxId: 562]} | 99.32 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 99.3 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 99.29 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 99.29 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 99.29 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 99.26 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 99.25 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 99.24 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 99.24 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 99.23 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 99.22 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 99.21 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 99.16 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 99.1 | |
| d2ifta1 | 183 | Putative methylase HI0767 {Haemophilus influenzae | 99.07 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 99.07 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 99.07 | |
| d2h00a1 | 250 | Methyltransferase 10 domain containing protein MET | 99.01 | |
| d1susa1 | 227 | Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag | 98.96 | |
| d1jsxa_ | 207 | Glucose-inhibited division protein B (GidB) {Esche | 98.91 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 98.76 | |
| d1qama_ | 235 | rRNA adenine dimethylase {Bacillus subtilis, Ermc' | 98.75 | |
| d1uwva2 | 358 | rRNA (Uracil-5-)-methyltransferase RumA, catalytic | 98.74 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 98.7 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 98.7 | |
| d1af7a2 | 193 | Chemotaxis receptor methyltransferase CheR, C-term | 98.67 | |
| d1inla_ | 295 | Spermidine synthase {Thermotoga maritima [TaxId: 2 | 98.64 | |
| d1xdza_ | 239 | Glucose-inhibited division protein B (GidB) {Bacil | 98.63 | |
| d1fp1d2 | 244 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 98.62 | |
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 98.55 | |
| d1xj5a_ | 290 | Spermidine synthase {Thale cress (Arabidopsis thal | 98.53 | |
| d1iy9a_ | 274 | Spermidine synthase {Bacillus subtilis [TaxId: 142 | 98.53 | |
| d1zq9a1 | 278 | Probable dimethyladenosine transferase {Human (Hom | 98.51 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 98.49 | |
| d1yuba_ | 245 | rRNA adenine dimethylase {Streptococcus pneumoniae | 98.48 | |
| d2f8la1 | 328 | Hypothetical protein Lmo1582 {Listeria monocytogen | 98.47 | |
| d2dula1 | 375 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 98.39 | |
| d1fp2a2 | 244 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 98.33 | |
| d1kyza2 | 243 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 98.27 | |
| d2ih2a1 | 223 | DNA methylase TaqI, N-terminal domain {Thermus aqu | 98.24 | |
| d1ixka_ | 313 | Hypothetical methyltransferase PH1374 {Archaeon Py | 98.17 | |
| d2b9ea1 | 293 | NOL1R {Human (Homo sapiens) [TaxId: 9606]} | 98.15 | |
| d1sqga2 | 284 | Ribosomal RNA small subunit methyltransferase B, R | 98.14 | |
| d1ej0a_ | 180 | RNA methyltransferase FtsJ {Escherichia coli [TaxI | 98.11 | |
| d1qyra_ | 252 | High level kasugamycin resistance protein KsgA {Es | 98.1 | |
| d1wg8a2 | 182 | TM0872, methyltransferase domain {Thermus thermoph | 97.94 | |
| d2bm8a1 | 232 | Cephalosporin hydroxylase CmcI {Streptomyces clavu | 97.88 | |
| d2okca1 | 425 | Type I restriction enzyme StySJI M protein {Bacter | 97.72 | |
| d2oyra1 | 250 | Hypothetical protein YhiQ {Shigella flexneri [TaxI | 97.57 | |
| d2p41a1 | 257 | An RNA cap (nucleoside-2'-O-)-methyltransferase do | 97.52 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 97.3 | |
| d1i4wa_ | 322 | Transcription factor sc-mtTFB {Baker's yeast (Sacc | 96.94 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 96.93 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 96.89 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 96.89 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 96.83 | |
| d2ar0a1 | 524 | M.EcoKI {Escherichia coli [TaxId: 562]} | 96.77 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 96.75 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 96.72 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 96.57 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 96.56 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 96.48 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 96.4 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 96.4 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 96.15 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 95.78 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 95.75 | |
| d1o9ga_ | 249 | rRNA methyltransferase AviRa {Streptomyces viridoc | 95.63 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 95.49 | |
| d1dcta_ | 324 | DNA methylase HaeIII {Haemophilus aegyptius [TaxId | 95.22 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 95.15 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 95.08 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 94.86 | |
| d2c7pa1 | 327 | DNA methylase HhaI {Haemophilus haemolyticus [TaxI | 94.82 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 94.43 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 94.04 | |
| d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 93.86 | |
| d1booa_ | 320 | m.PvuII N4 cytosine-specific DNA methyltransferase | 93.84 | |
| d2uyoa1 | 297 | Putative methyltransferase ML2640 {Mycobacterium l | 93.76 | |
| d2ae2a_ | 259 | Tropinone reductase {Jimsonweed (Datura stramonium | 93.68 | |
| d1iy8a_ | 258 | Levodione reductase {Corynebacterium aquaticum [Ta | 93.55 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 93.48 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 93.4 | |
| d1zema1 | 260 | Xylitol dehydrogenase {Gluconobacter oxydans [TaxI | 93.35 | |
| d1xq1a_ | 259 | Tropinone reductase {Thale cress (Arabidopsis thal | 93.32 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 93.1 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 93.05 | |
| d1g55a_ | 343 | DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | 93.04 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 93.03 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 92.98 | |
| d1xkqa_ | 272 | Hypothetical protein R05D8.7 {Caenorhabditis elega | 92.74 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 92.16 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 92.12 | |
| d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 91.88 | |
| d2py6a1 | 395 | Methyltransferase FkbM {Methylobacillus flagellatu | 91.86 | |
| d1xhla_ | 274 | Hypothetical protein F25D1.5 {Caenorhabditis elega | 91.76 | |
| d1spxa_ | 264 | Glucose dehydrogenase (5l265) {Nematode (Caenorhab | 91.65 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 91.64 | |
| d2c07a1 | 251 | beta-keto acyl carrier protein reductase {Malaria | 91.55 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 91.39 | |
| d1vj1a2 | 187 | Putative zinc-binding alcohol dehydrogenase {Mouse | 91.3 | |
| d2bgka1 | 268 | Rhizome secoisolariciresinol dehydrogenase {Mayapp | 91.01 | |
| d1xa0a2 | 176 | B. subtilis YhfP homologue {Bacillus stearothermop | 90.98 | |
| d1luaa1 | 191 | Methylene-tetrahydromethanopterin dehydrogenase {M | 90.92 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 90.57 | |
| d1vl8a_ | 251 | Gluconate 5-dehydrogenase {Thermotoga maritima [Ta | 90.51 | |
| d1fmca_ | 255 | 7-alpha-hydroxysteroid dehydrogenase {Escherichia | 90.38 | |
| d2gdza1 | 254 | 15-hydroxyprostaglandin dehydrogenase, PGDH {Human | 90.26 | |
| d1h5qa_ | 260 | Mannitol dehydrogenase {Mushroom (Agaricus bisporu | 90.04 | |
| d2rhca1 | 257 | beta-keto acyl carrier protein reductase {Streptom | 89.37 | |
| d1wmaa1 | 275 | Carbonyl reductase/20beta-hydroxysteroid dehydroge | 89.21 | |
| d1w6ua_ | 294 | 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H | 88.95 | |
| d1rjda_ | 328 | Leucine carboxy methyltransferase Ppm1 {Baker's ye | 88.93 | |
| d1yxma1 | 297 | Peroxisomal trans 2-enoyl CoA reductase {Human (Ho | 88.89 | |
| d1gu7a2 | 189 | 2,4-dienoyl-CoA reductase {Yeast (Candida tropical | 88.82 | |
| d1tt7a2 | 167 | Hypothetical protein YhfP {Bacillus subtilis [TaxI | 88.76 | |
| d1g0oa_ | 272 | 1,3,8-trihydroxynaphtalene reductase (THNR, naphto | 88.69 | |
| d1pr9a_ | 244 | Carbonyl reductase {Human (Homo sapiens) [TaxId: 9 | 88.52 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 88.28 | |
| d1nffa_ | 244 | Putative oxidoreductase Rv2002 {Mycobacterium tube | 87.76 | |
| d1gega_ | 255 | meso-2,3-butanediol dehydrogenase {Klebsiella pneu | 87.59 | |
| d1zk4a1 | 251 | R-specific alcohol dehydrogenase {Lactobacillus br | 87.56 | |
| d1qsga_ | 258 | Enoyl-ACP reductase {Escherichia coli [TaxId: 562] | 87.31 | |
| d2ew8a1 | 247 | (s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb | 86.65 | |
| d1cyda_ | 242 | Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1 | 86.54 | |
| d1zkda1 | 365 | Hypothetical protein RPA4359 {Rhodopseudomonas pal | 86.17 | |
| d1p77a1 | 171 | Shikimate 5-dehydrogenase AroE {Haemophilus influe | 86.05 | |
| d1ja9a_ | 259 | 1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl | 86.0 | |
| d1ydea1 | 250 | Retinal dehydrogenase/reductase 3 {Human (Homo sap | 85.87 | |
| d1geea_ | 261 | Glucose dehydrogenase {Bacillus megaterium [TaxId: | 85.76 | |
| d1q7ba_ | 243 | beta-keto acyl carrier protein reductase {Escheric | 85.61 | |
| d1hdca_ | 254 | 3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre | 84.86 | |
| d1xu9a_ | 269 | 11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom | 84.58 | |
| d1oaaa_ | 259 | Sepiapterin reductase {Mouse (Mus musculus) [TaxId | 84.47 | |
| d1bdba_ | 276 | Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps | 84.38 | |
| d1k2wa_ | 256 | Sorbitol dehydrogenase {Rhodobacter sphaeroides [T | 84.31 | |
| d2a4ka1 | 241 | beta-keto acyl carrier protein reductase {Thermus | 83.36 | |
| d1ulsa_ | 242 | beta-keto acyl carrier protein reductase {Thermus | 82.26 | |
| d1hxha_ | 253 | 3beta/17beta hydroxysteroid dehydrogenase {Comamon | 82.24 | |
| d1x1ta1 | 260 | D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas | 82.1 | |
| d1o89a2 | 177 | Hypothetical protein YhdH {Escherichia coli [TaxId | 81.73 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 81.46 | |
| d1m6ex_ | 359 | Salicylic acid carboxyl methyltransferase (SAMT) { | 80.92 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 80.18 |
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.6e-55 Score=418.24 Aligned_cols=308 Identities=33% Similarity=0.615 Sum_probs=275.5
Q ss_pred hhhhhhhhhhhhHhhcCChHhHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEechHHHHHHHHHHH
Q 016351 42 NYFCTYAFLYHQKEMLSDRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEATKMSDHARTLVK 121 (391)
Q Consensus 42 ~~~~~~~~~~~~~~ml~d~~r~~~~~~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s~~~~~a~~~~~ 121 (391)
.||++|+++..|..||+|..|+..|+++|.++....++++|||||||+|.+++++|++|+++|+|+|.++++..|+++++
T Consensus 2 ~yf~~y~~~~~h~~ml~D~~r~~~y~~aI~~~~~~~~~~~VLDlGcGtG~ls~~aa~~Ga~~V~avd~s~~~~~a~~~~~ 81 (328)
T d1g6q1_ 2 YYFDSYDHYGIHEEMLQDTVRTLSYRNAIIQNKDLFKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSSIIEMAKELVE 81 (328)
T ss_dssp CCCCCCCCHHHHHHHHTCHHHHHHHHHHHHHHHHHHTTCEEEEETCTTSHHHHHHHHTCCSEEEEEESSTHHHHHHHHHH
T ss_pred CcchhhcCchHHHHHhCCHHHHHHHHHHHHhccccCCcCEEEEeCCCCCHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHH
Confidence 48999999999999999999999999999887666789999999999999999999999999999999988899999999
Q ss_pred HcCCCCcEEEEEcccccCCCC-CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcccceeEEeecccCcCccc
Q 016351 122 ANNLQDVVEVIEGSVEDIVLP-EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHARMWVAPIRSGLGDQK 200 (391)
Q Consensus 122 ~~~~~~~v~~i~~d~~~~~~~-~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~~~~~~~~~~~~~~~~~ 200 (391)
.+++.++|+++++++.++.++ +++|+|+++++++.+.++..+..++.++.++|||||+++|..+++|++|+++..
T Consensus 82 ~~~~~~~i~~i~~~~~~l~~~~~~~D~i~se~~~~~~~~e~~~~~~~~a~~r~LkpgG~iiP~~~~~~~~~v~~~~---- 157 (328)
T d1g6q1_ 82 LNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIFPDKCSIHLAGLEDSQ---- 157 (328)
T ss_dssp HTTCTTTEEEEESCTTTSCCSSSCEEEEEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEESCEEEEEEEEECCHH----
T ss_pred HhCccccceEEEeehhhccCcccceeEEEEEecceeeccchhHHHHHHHHHhccCCCeEEEeeecceeeecccCHH----
Confidence 999999999999999999887 799999999999999999999999999999999999999999999999997642
Q ss_pred hhhccccccchhhhhhcCccccccccccCCCcchhhhhhhhcccCceeecCCCCccccceeEEEEEcCCCCcccccceee
Q 016351 201 QQDYEGALDDWYSFLKETKTYYGVDMSVLTKPFSEEQKKYYLQTSLWSNLHPDQVIGTAAVVKNIDCSTATVDDIREVRS 280 (391)
Q Consensus 201 ~~~~~~~~~~w~~~~~~~~~~~g~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~p~~~~~~dl~~~~~~~~~~~~~ 280 (391)
.+......| ++++|+|++.+. .....++.+..+.+.++++.|..+..+||.+...+++ ....
T Consensus 158 --l~~~~~~~~-------~~~~G~d~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~ 219 (328)
T d1g6q1_ 158 --YKDEKLNYW-------QDVYGFDYSPFV--------PLVLHEPIVDTVERNNVNTTSDKLIEFDLNTVKISDL-AFKS 219 (328)
T ss_dssp --HHHHHHHHT-------TCBTTBCCTTHH--------HHHTTSCEEECCCGGGBCBCCEEEEEEETTTCCGGGG-SEEE
T ss_pred --HHHHhcccc-------ccccccccchhh--------hhhccCcEEEEecCceeecCceeEEEecccccchhhc-ceee
Confidence 122334455 578999999883 3344567888888889999999999999999988887 6788
Q ss_pred EEEEEEEecCceeEEEEEEEEeeecCCCCCCCCCcEEEecCCCCCCCCCccceEEecCCccccCCCCEEEEEEEEEeCCC
Q 016351 281 KFLSSIRGEGTRLCGFSGWFDVHFRGSTEDPAQQEIELTTAPSTYNGTHWGQQVFLFRPSVRVSEGDDLNVSFSMTRSKE 360 (391)
Q Consensus 281 ~~~~~~~~~~g~~~g~~~wf~~~l~~~~~~~~~~~i~lst~P~~~~~~hW~q~~~~l~~p~~v~~g~~l~~~~~~~~~~~ 360 (391)
.+++.+. ++|++|||++||+++|++.. ...++.|||+| ..+.|||+|++|+|++|+.|++||+|.+++.+.++.+
T Consensus 220 ~~~~~~~-~~g~~hg~~~wFd~~l~~~~---~~~~i~lST~P-~~~~thW~Q~v~~l~~pi~v~~gd~i~~~~~~~~~~~ 294 (328)
T d1g6q1_ 220 NFKLTAK-RQDMINGIVTWFDIVFPAPK---GKRPVEFSTGP-HAPYTHWKQTIFYFPDDLDAETGDTIEGELVCSPNEK 294 (328)
T ss_dssp EEEEEBC-SSCEEEEEEEEEEEECCCCT---TSCCCEEECST-TSCCCTTCEEEEEEEEEEECCTTCEEEEEEEEEEETT
T ss_pred eEEEEec-CCcEEEEEEEEEEEEccCCC---CCCceEEeCCC-CCCCCceeeEEEEeCCceEeCCCCEEEEEEEEEECCC
Confidence 8999988 99999999999999997531 14568999999 4889999999999999999999999999999999999
Q ss_pred CCeeeEEEEEEEEecc
Q 016351 361 NHRLLEVEFSCEIRES 376 (391)
Q Consensus 361 ~~r~~~~~~~~~~~~~ 376 (391)
++|.++|+++|.++..
T Consensus 295 ~~r~~~v~~~~~~~~~ 310 (328)
T d1g6q1_ 295 NNRDLNIKISYKFESN 310 (328)
T ss_dssp EEEEEEEEEEEEEECC
T ss_pred CCeeEEEEEEEEEEec
Confidence 9999999999987653
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=100.00 E-value=2.9e-55 Score=414.19 Aligned_cols=305 Identities=36% Similarity=0.666 Sum_probs=271.5
Q ss_pred hhhhhhhhHhhcCChHhHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEechHHHHHHHHHHHHcCC
Q 016351 46 TYAFLYHQKEMLSDRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEATKMSDHARTLVKANNL 125 (391)
Q Consensus 46 ~~~~~~~~~~ml~d~~r~~~~~~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s~~~~~a~~~~~~~~~ 125 (391)
+|+++..|+.||+|..|++.|+++|.++....++++|||||||+|.+++++|++|+++|+|+|.++++..|+++++.+++
T Consensus 1 ~y~~~~~h~~Ml~D~~R~~~y~~ai~~~~~~~~~~~VLDiGcG~G~ls~~aa~~Ga~~V~avd~s~~~~~a~~~~~~n~~ 80 (316)
T d1oria_ 1 SYAHFGIHEEMLKDEVRTLTYRNSMFHNRHLFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSISDYAVKIVKANKL 80 (316)
T ss_dssp CHHHHHHHHHHHHCHHHHHHHHHHHHTCHHHHTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTTHHHHHHHHHHTTC
T ss_pred CCccchHHHHHhCCHHHHHHHHHHHHhccccCCcCEEEEEecCCcHHHHHHHHhCCCEEEEEcCcHHHhhhhhHHHHhCC
Confidence 47888899999999999999999998776566899999999999999999999999899999999666888899999999
Q ss_pred CCcEEEEEcccccCCCC-CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcccceeEEeecccCcCccchhhc
Q 016351 126 QDVVEVIEGSVEDIVLP-EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHARMWVAPIRSGLGDQKQQDY 204 (391)
Q Consensus 126 ~~~v~~i~~d~~~~~~~-~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~~~~~~~~~~~~~~~~~~~~~ 204 (391)
.++|+++++|+.+++.+ +++|+|+++++++.+.++..++.+++++.++|+|||.+||..+++|++|+++... .
T Consensus 81 ~~~v~~~~~~~~~~~~~~~~~D~ivs~~~~~~l~~e~~~~~~l~~~~r~Lkp~G~iiP~~~~~~~~~v~~~~~------~ 154 (316)
T d1oria_ 81 DHVVTIIKGKVEEVELPVEKVDIIISEWMGYCLFYESMLNTVLHARDKWLAPDGLIFPDRATLYVTAIEDRQY------K 154 (316)
T ss_dssp TTTEEEEESCTTTCCCSSSCEEEEEECCCBBTBTBTCCHHHHHHHHHHHEEEEEEEESCEEEEEEEEECCHHH------H
T ss_pred ccccceEeccHHHcccccceeEEEeeeeeeeeeccHHHHHHHHHHHHhcCCCCeEEEeeeEEEEEEEecCHHH------H
Confidence 99999999999999887 8999999999999999999999999999999999999999999999999975321 2
Q ss_pred cccccchhhhhhcCccccccccccCCCcchhhhhhhhcccCceeecCCCCccccceeEEEEEcCCCCcccccceeeEEEE
Q 016351 205 EGALDDWYSFLKETKTYYGVDMSVLTKPFSEEQKKYYLQTSLWSNLHPDQVIGTAAVVKNIDCSTATVDDIREVRSKFLS 284 (391)
Q Consensus 205 ~~~~~~w~~~~~~~~~~~g~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~p~~~~~~dl~~~~~~~~~~~~~~~~~ 284 (391)
......| ++++|+|++++. .....++.+....+.+++++|+.+.++||.+...+++ .....+++
T Consensus 155 ~~~~~~~-------~~~~g~d~~~~~--------~~~~~~~~v~~~~~~~~ls~p~~~~~~d~~~~~~~~l-~~~~~~~~ 218 (316)
T d1oria_ 155 DYKIHWW-------ENVYGFDMSCIK--------DVAIKEPLVDVVDPKQLVTNACLIKEVDIYTVKVEDL-TFTSPFCL 218 (316)
T ss_dssp HHHTTTT-------TCBTTBCCHHHH--------HHHHTSCEEECCCGGGEEEEEEEEEEEETTTCCGGGG-SEEEEEEE
T ss_pred hhhcccc-------cccccccchhhh--------hhhccccEEEEecCceEeeCCEEeEEEcCCCCcccCc-cEEEEEEE
Confidence 2233455 478999998873 3334457777778889999999999999999888887 67888999
Q ss_pred EEEecCceeEEEEEEEEeeecCCCCCCCCCcEEEecCCCCCCCCCccceEEecCCccccCCCCEEEEEEEEEeCCCCCee
Q 016351 285 SIRGEGTRLCGFSGWFDVHFRGSTEDPAQQEIELTTAPSTYNGTHWGQQVFLFRPSVRVSEGDDLNVSFSMTRSKENHRL 364 (391)
Q Consensus 285 ~~~~~~g~~~g~~~wf~~~l~~~~~~~~~~~i~lst~P~~~~~~hW~q~~~~l~~p~~v~~g~~l~~~~~~~~~~~~~r~ 364 (391)
.+. ++|++|||++||+++|.++ ++++.|||+|. .+.|||+|++|+|++|+.|++||.|.+++.+.++.+++|+
T Consensus 219 ~~~-~~g~~hg~~~wFd~~l~~~-----~~~v~lST~P~-~~~thW~Q~v~~l~~p~~v~~g~~i~~~i~~~~~~~~~r~ 291 (316)
T d1oria_ 219 QVK-RNDYVHALVAYFNIEFTRC-----HKRTGFSTSPE-SPYTHWKQTVFYMEDYLTVKTGEEIFGTIGMRPNAKNNRD 291 (316)
T ss_dssp EBC-SSEEEEEEEEEEEEECTTS-----SSCCEEECSTT-SCCCTTCEEEEEEEEEEEECTTCEEEEEEEEEECSSSTTC
T ss_pred eec-CCceEEEEEEEEEEEeeCC-----CCCeEEECCCC-cCCCceecEEEEcCCceEcCCCCEEEEEEEEEECCCCCce
Confidence 988 9999999999999999754 56799999994 7889999999999999999999999999999999999999
Q ss_pred eEEEEEEEEeccccc
Q 016351 365 LEVEFSCEIRESTGQ 379 (391)
Q Consensus 365 ~~~~~~~~~~~~~~~ 379 (391)
++++++|.++++...
T Consensus 292 ~~~~~~~~~~~~~~~ 306 (316)
T d1oria_ 292 LDFTIDLDFKGQLCE 306 (316)
T ss_dssp EEEEEEEEEECSSCE
T ss_pred EEEEEEEEecCeeec
Confidence 999999999988744
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.9e-54 Score=406.76 Aligned_cols=303 Identities=35% Similarity=0.652 Sum_probs=268.0
Q ss_pred hhhhhhhhhhHhhcCChHhHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEechHHHHHHHHHHHHc
Q 016351 44 FCTYAFLYHQKEMLSDRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEATKMSDHARTLVKAN 123 (391)
Q Consensus 44 ~~~~~~~~~~~~ml~d~~r~~~~~~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s~~~~~a~~~~~~~ 123 (391)
|++|+++..|+.||+|..|++.|.++|.+.....++++|||||||+|.+++++|++|+++|+|+|.|+.+..|+++++.+
T Consensus 1 ~~~y~~~~~h~~ml~D~~r~~~y~~ai~~~~~~~~~~~VLDiGcG~G~lsl~aa~~Ga~~V~aid~s~~~~~a~~~~~~~ 80 (311)
T d2fyta1 1 FSSYGHYGIHEEMLKDKIRTESYRDFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQAMDIIRLN 80 (311)
T ss_dssp CCGGGSHHHHHHHHTCHHHHHHHHHHHHHCGGGTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESSTHHHHHHHHHHHT
T ss_pred CCCcccchHHHHHhCCHHHHHHHHHHHHhccccCCcCEEEEECCCCCHHHHHHHHcCCCEEEEEeCHHHHHHHHHHHHHh
Confidence 67899999999999999999999999999877788999999999999999999999999999999994445678888889
Q ss_pred CCCCcEEEEEcccccCCCC-CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcccceeEEeecccCcCccchh
Q 016351 124 NLQDVVEVIEGSVEDIVLP-EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHARMWVAPIRSGLGDQKQQ 202 (391)
Q Consensus 124 ~~~~~v~~i~~d~~~~~~~-~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~~~~~~~~~~~~~~~~~~~ 202 (391)
++.++|+++++|+.++..+ ++||+|+|+++++++..+..++.++.++.++|+|||+++|+.+++|++|+++..
T Consensus 81 ~~~~~i~~~~~~~~~l~~~~~~~D~Ivse~~~~~~~~e~~~~~~~~a~~~~Lkp~G~iip~~~~~~~~~v~~~~------ 154 (311)
T d2fyta1 81 KLEDTITLIKGKIEEVHLPVEKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVYPDICTISLVAVSDVN------ 154 (311)
T ss_dssp TCTTTEEEEESCTTTSCCSCSCEEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEESCEEEEEEEEECCHH------
T ss_pred CCCccceEEEeeHHHhcCccccceEEEEeeeeeecccccccHHHHHHHHhcCCCCcEEeccccceEEEEecCHH------
Confidence 9999999999999999877 899999999999999999999999999999999999999999999999997531
Q ss_pred hccccccchhhhhhcCccccccccccCCCcchhhhhhhhcccCceeecCCCCccccceeEEEEEcCCCCcccccceeeEE
Q 016351 203 DYEGALDDWYSFLKETKTYYGVDMSVLTKPFSEEQKKYYLQTSLWSNLHPDQVIGTAAVVKNIDCSTATVDDIREVRSKF 282 (391)
Q Consensus 203 ~~~~~~~~w~~~~~~~~~~~g~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~p~~~~~~dl~~~~~~~~~~~~~~~ 282 (391)
.+......| .+.+|+|++.+. +....++.+..+++..++++|+.+.++||.+...+++ .....|
T Consensus 155 ~~~~~~~~~-------~~~~G~d~~~~~--------~~~~~~~~~~~~~~~~~ls~p~~~~~~d~~~~~~~~~-~~~~~~ 218 (311)
T d2fyta1 155 KHADRIAFW-------DDVYGFKMSCMK--------KAVIPEAVVEVLDPKTLISEPCGIKHIDCHTTSISDL-EFSSDF 218 (311)
T ss_dssp HHHHHTGGG-------GCBTTBCCGGGH--------HHHTTBCEEECCCGGGBCBCCEEEEEEETTTCCGGGG-SEEEEE
T ss_pred HHHhhhccc-------cccccccccchh--------hccccccEEEecChhheecCCEeEEEeccCcCccccc-cEEEEE
Confidence 122334456 478999999882 3344567788888999999999999999999888877 678889
Q ss_pred EEEEEecCceeEEEEEEEEeeecCCCCCCCCCcEEEecCCCCCCCCCccceEEecCCccccCCCCEEEEEEEEEeCCCCC
Q 016351 283 LSSIRGEGTRLCGFSGWFDVHFRGSTEDPAQQEIELTTAPSTYNGTHWGQQVFLFRPSVRVSEGDDLNVSFSMTRSKENH 362 (391)
Q Consensus 283 ~~~~~~~~g~~~g~~~wf~~~l~~~~~~~~~~~i~lst~P~~~~~~hW~q~~~~l~~p~~v~~g~~l~~~~~~~~~~~~~ 362 (391)
+++++ ++|++|||++||+++|... .++++.|||+|. .+.|||+|++++|++|+.|++||+|.+++++.++.+|.
T Consensus 219 ~~~~~-~~g~~~g~~~Wfd~~f~~~----~~~~~~lST~P~-~~~thW~q~~~~l~~p~~v~~gd~l~~~~~~~~~~~~~ 292 (311)
T d2fyta1 219 TLKIT-RTSMCTAIAGYFDIYFEKN----CHNRVVFSTGPQ-STKTHWKQTVFLLEKPFSVKAGEALKGKVTVHKNKKDP 292 (311)
T ss_dssp EEEBC-SCEEEEEEEEEEEEEECTT----CSSCEEEECSTT-SCCCTTCEEEEEEEEEEEECTTCEEEEEEEEEECSSCT
T ss_pred Eeeec-CCcceEEEEEEEEEEEECC----CCCceEEeCCCC-cCCCccccEEEEeCCceEeCCCCEEEEEEEEEECCCCC
Confidence 99988 9999999999999999643 156799999994 78899999999999999999999999999999999999
Q ss_pred eeeEEEEEEEEe
Q 016351 363 RLLEVEFSCEIR 374 (391)
Q Consensus 363 r~~~~~~~~~~~ 374 (391)
|+|+++++|+.+
T Consensus 293 r~~~~~~~~~~~ 304 (311)
T d2fyta1 293 RSLTVTLTLNNS 304 (311)
T ss_dssp TSEEEEEEETTE
T ss_pred EEEEEEEEEeCC
Confidence 998888877544
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.80 E-value=2.5e-19 Score=161.28 Aligned_cols=142 Identities=21% Similarity=0.323 Sum_probs=105.5
Q ss_pred hhhhhhhhhhhhH--hhcCChHhHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHH
Q 016351 42 NYFCTYAFLYHQK--EMLSDRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHART 118 (391)
Q Consensus 42 ~~~~~~~~~~~~~--~ml~d~~r~~~~~~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~ 118 (391)
+||+.++..|+.. ....+......+.+.+.......+.++|||||||+|.++..+++.|+ +|+|||+| .|++.|++
T Consensus 3 ~~~~~~a~~Yd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLDiGcGtG~~~~~l~~~~~-~v~gvD~s~~mi~~a~~ 81 (251)
T d1wzna1 3 ELYTLLAEYYDTIYRRRIERVKAEIDFVEEIFKEDAKREVRRVLDLACGTGIPTLELAERGY-EVVGLDLHEEMLRVARR 81 (251)
T ss_dssp GGGTTTGGGHHHHTHHHHHTHHHHHHHHHHHHHHTCSSCCCEEEEETCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHH
T ss_pred chhHhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCCccchhhcccce-EEEEEeecccccccccc
Confidence 4666677777551 11111111222333344344455678999999999999999999998 89999999 99999999
Q ss_pred HHHHcCCCCcEEEEEcccccCCCCCcccEEEEcc-ccccccCcchHHHHHHHHhccccCCeEEEccccee
Q 016351 119 LVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEW-MGYFLLRESMFDSVICARDRWLKPTGVMYPSHARM 187 (391)
Q Consensus 119 ~~~~~~~~~~v~~i~~d~~~~~~~~~~D~Ivse~-~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~~~~ 187 (391)
+++.+++. ++++++|+++++++++||+|+|.. ..+++ ....+..+++.+.++|||||++++...++
T Consensus 82 ~~~~~~~~--i~~~~~d~~~l~~~~~fD~I~~~~~~~~~~-~~~~~~~~L~~~~~~LkpgG~lii~~~~~ 148 (251)
T d1wzna1 82 KAKERNLK--IEFLQGDVLEIAFKNEFDAVTMFFSTIMYF-DEEDLRKLFSKVAEALKPGGVFITDFPCW 148 (251)
T ss_dssp HHHHTTCC--CEEEESCGGGCCCCSCEEEEEECSSGGGGS-CHHHHHHHHHHHHHHEEEEEEEEEEEEC-
T ss_pred cccccccc--chheehhhhhcccccccchHhhhhhhhhcC-ChHHHHHHHHHHHHHcCCCcEEEEEeccc
Confidence 99988774 999999999999889999999843 22222 33456789999999999999999865443
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=99.78 E-value=2e-19 Score=161.74 Aligned_cols=135 Identities=17% Similarity=0.282 Sum_probs=105.4
Q ss_pred hhhhhhhhhhhHhhcCChHhHHHHHHHHHhcCC--CCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHH
Q 016351 43 YFCTYAFLYHQKEMLSDRVRMDAYFNSIFQNKH--HFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTL 119 (391)
Q Consensus 43 ~~~~~~~~~~~~~ml~d~~r~~~~~~~i~~~~~--~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~ 119 (391)
+|+.++.+|+. ++.....+..+.+.+.+.+. ..++++|||||||+|.++..+++.|. +|+|||.| .|++.|+++
T Consensus 2 ~y~~~A~~YD~--l~~~~~~y~~~~~~~~~~~~~~~~~~~~vLDiGCG~G~~~~~l~~~g~-~v~GvD~S~~ml~~A~~~ 78 (246)
T d1y8ca_ 2 CYNKFAHIYDK--LIRADVDYKKWSDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPKFK-NTWAVDLSQEMLSEAENK 78 (246)
T ss_dssp CHHHHHHHHHH--HTTCSCCHHHHHHHHHHHHHTTTCCTTEEEEETCTTSTTHHHHGGGSS-EEEEECSCHHHHHHHHHH
T ss_pred CHHHHHHHHHH--HhcCCCCHHHHHHHHHHHHHHhCCCCCeEEEEeCcCCHHHHHHHHhCC-ccEeeccchhhhhhcccc
Confidence 57778888875 23333334444444433321 34568999999999999999999988 79999999 999999999
Q ss_pred HHHcCCCCcEEEEEcccccCCCCCcccEEEE--ccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 120 VKANNLQDVVEVIEGSVEDIVLPEKVDVIIS--EWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 120 ~~~~~~~~~v~~i~~d~~~~~~~~~~D~Ivs--e~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
++..++. ++++++|+.++.++++||+|+| ..+.+ +.....+..+++.++++|+|||.+++.
T Consensus 79 ~~~~~~~--v~~~~~d~~~~~~~~~fD~i~~~~~~~~~-~~~~~~~~~~l~~~~~~LkpgG~~i~~ 141 (246)
T d1y8ca_ 79 FRSQGLK--PRLACQDISNLNINRKFDLITCCLDSTNY-IIDSDDLKKYFKAVSNHLKEGGVFIFD 141 (246)
T ss_dssp HHHTTCC--CEEECCCGGGCCCSCCEEEEEECTTGGGG-CCSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred ccccCcc--ceeeccchhhhcccccccccceeeeeeec-cCCHHHHHHHHHHHHHhCCCCeEEEEE
Confidence 9888874 9999999999988899999998 33333 334446788999999999999999864
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=99.73 E-value=6.6e-18 Score=150.52 Aligned_cols=111 Identities=21% Similarity=0.318 Sum_probs=94.7
Q ss_pred HHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-Ccc
Q 016351 68 NSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKV 145 (391)
Q Consensus 68 ~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~-~~~ 145 (391)
..+.+..+..++.+|||||||+|.++..+++.++ +|+|||+| .|++.|++++..+++++ +.++++|+.+++++ ++|
T Consensus 6 ~~l~~~~~~~~~~rILDiGcGtG~~~~~la~~~~-~v~gvD~S~~~l~~A~~~~~~~~~~~-~~~~~~d~~~~~~~~~~f 83 (234)
T d1xxla_ 6 GLMIKTAECRAEHRVLDIGAGAGHTALAFSPYVQ-ECIGVDATKEMVEVASSFAQEKGVEN-VRFQQGTAESLPFPDDSF 83 (234)
T ss_dssp HHHHHHHTCCTTCEEEEESCTTSHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHHTCCS-EEEEECBTTBCCSCTTCE
T ss_pred HHHHHHhCCCCCCEEEEeCCcCcHHHHHHHHhCC-eEEEEeCChhhhhhhhhhhccccccc-cccccccccccccccccc
Confidence 3455556678899999999999999999999886 79999999 99999999999998865 99999999999877 899
Q ss_pred cEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 146 DVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 146 D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
|+|+|..+ +.+..++..+++++.++|||||++++.
T Consensus 84 D~v~~~~~---l~~~~d~~~~l~~~~r~LkpgG~~~~~ 118 (234)
T d1xxla_ 84 DIITCRYA---AHHFSDVRKAVREVARVLKQDGRFLLV 118 (234)
T ss_dssp EEEEEESC---GGGCSCHHHHHHHHHHHEEEEEEEEEE
T ss_pred ceeeeece---eecccCHHHHHHHHHHeeCCCcEEEEE
Confidence 99998432 223345788999999999999998764
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=99.73 E-value=1.6e-17 Score=149.11 Aligned_cols=119 Identities=18% Similarity=0.223 Sum_probs=99.4
Q ss_pred HHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC
Q 016351 64 DAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP 142 (391)
Q Consensus 64 ~~~~~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~ 142 (391)
....+.+...+...++.+|||||||+|.++..+++....+|+|||+| .|++.|+++++..++.++|+++++|+.++...
T Consensus 19 ~~~~~~l~~~~~l~pg~~VLDiGCG~G~~~~~la~~~~~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~~~~~~ 98 (245)
T d1nkva_ 19 EEKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVAN 98 (245)
T ss_dssp HHHHHHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCCS
T ss_pred HHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHhcCCEEEEEecccchhhHHHHHHHHhhccccchhhhhHHhhcccc
Confidence 33445566777778899999999999999999888633489999999 99999999999999999999999999998656
Q ss_pred CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcccc
Q 016351 143 EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 143 ~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~~ 185 (391)
++||+|+|..+.+.+ .++..++.++.++|||||++++...
T Consensus 99 ~~fD~v~~~~~~~~~---~d~~~~l~~~~r~LkPGG~l~i~~~ 138 (245)
T d1nkva_ 99 EKCDVAACVGATWIA---GGFAGAEELLAQSLKPGGIMLIGEP 138 (245)
T ss_dssp SCEEEEEEESCGGGT---SSSHHHHHHHTTSEEEEEEEEEEEE
T ss_pred CceeEEEEEehhhcc---CCHHHHHHHHHHHcCcCcEEEEEec
Confidence 899999984433333 2467899999999999999988644
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.73 E-value=1.5e-17 Score=146.79 Aligned_cols=116 Identities=21% Similarity=0.237 Sum_probs=93.0
Q ss_pred HHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC
Q 016351 63 MDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL 141 (391)
Q Consensus 63 ~~~~~~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~ 141 (391)
...+...+.+.+ .++.+|||||||+|.++..+++.|+ +|+|+|+| .|++.|++++...+.. +.++.+|+.++++
T Consensus 24 ~~~~~~~~~~~l--~~~~~ILDiGcG~G~~~~~la~~~~-~v~giD~S~~~i~~ak~~~~~~~~~--~~~~~~d~~~l~~ 98 (226)
T d1ve3a1 24 IETLEPLLMKYM--KKRGKVLDLACGVGGFSFLLEDYGF-EVVGVDISEDMIRKAREYAKSRESN--VEFIVGDARKLSF 98 (226)
T ss_dssp HHHHHHHHHHSC--CSCCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCC--CEEEECCTTSCCS
T ss_pred HHHHHHHHHHhc--CCCCEEEEECCCcchhhhhHhhhhc-ccccccccccchhhhhhhhcccccc--ccccccccccccc
Confidence 334444555554 3568999999999999999999987 79999999 9999999999887754 7899999999887
Q ss_pred C-CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEccc
Q 016351 142 P-EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 142 ~-~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~ 184 (391)
+ ++||+|+|..+.+++.. .++..+++.+.++|||||.+++..
T Consensus 99 ~~~~fD~I~~~~~l~~~~~-~d~~~~l~~i~~~LkpgG~lii~~ 141 (226)
T d1ve3a1 99 EDKTFDYVIFIDSIVHFEP-LELNQVFKEVRRVLKPSGKFIMYF 141 (226)
T ss_dssp CTTCEEEEEEESCGGGCCH-HHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cCcCceEEEEecchhhCCh-hHHHHHHHHHHHHcCcCcEEEEEE
Confidence 6 89999999544333322 357788999999999999988653
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=99.71 E-value=2.3e-17 Score=146.41 Aligned_cols=107 Identities=26% Similarity=0.285 Sum_probs=90.4
Q ss_pred hcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-CcccEEE
Q 016351 72 QNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVII 149 (391)
Q Consensus 72 ~~~~~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~-~~~D~Iv 149 (391)
+.....++.+|||||||+|.++..+++.|+ +|+|+|+| .|++.|+++++..+..+ ++++++|+++++++ ++||+|+
T Consensus 9 ~~~~l~~~~rVLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~i~~A~~~~~~~~~~~-i~~~~~d~~~l~~~~~~fD~v~ 86 (231)
T d1vl5a_ 9 QIAALKGNEEVLDVATGGGHVANAFAPFVK-KVVAFDLTEDILKVARAFIEGNGHQQ-VEYVQGDAEQMPFTDERFHIVT 86 (231)
T ss_dssp HHHTCCSCCEEEEETCTTCHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHTTCCS-EEEEECCC-CCCSCTTCEEEEE
T ss_pred HhcCCCCcCEEEEecccCcHHHHHHHHhCC-EEEEEECCHHHHhhhhhccccccccc-cccccccccccccccccccccc
Confidence 334566789999999999999999999987 89999999 99999999999988865 99999999999876 8999999
Q ss_pred EccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 150 SEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 150 se~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
|....+++ .+...++.++.++|||||++++.
T Consensus 87 ~~~~l~~~---~d~~~~l~~~~r~LkpgG~l~i~ 117 (231)
T d1vl5a_ 87 CRIAAHHF---PNPASFVSEAYRVLKKGGQLLLV 117 (231)
T ss_dssp EESCGGGC---SCHHHHHHHHHHHEEEEEEEEEE
T ss_pred cccccccc---CCHHHHHHHHHHhcCCCcEEEEE
Confidence 84432322 35778899999999999998864
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=99.70 E-value=1.3e-17 Score=149.17 Aligned_cols=131 Identities=21% Similarity=0.274 Sum_probs=95.4
Q ss_pred hhhhhhhhhhhhhHhhcCChHhHHHHHHHHHhcC--CCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHH
Q 016351 41 ANYFCTYAFLYHQKEMLSDRVRMDAYFNSIFQNK--HHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHAR 117 (391)
Q Consensus 41 ~~~~~~~~~~~~~~~ml~d~~r~~~~~~~i~~~~--~~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~ 117 (391)
.+||+.++..|+. +.+...+..+.+.+...+ ...++.+|||+|||+|.++..+++.|+ +|+|||+| .|++.|+
T Consensus 6 ~~~yd~~a~~Yd~---~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~giD~s~~~l~~a~ 81 (246)
T d2avna1 6 WEFYDRIARAYDS---MYETPKWKLYHRLIGSFLEEYLKNPCRVLDLGGGTGKWSLFLQERGF-EVVLVDPSKEMLEVAR 81 (246)
T ss_dssp HHHHHHHHHHHGG---GGCSHHHHHHHHHHHHHHHHHCCSCCEEEEETCTTCHHHHHHHTTTC-EEEEEESCHHHHHHHH
T ss_pred HHHHHHHHHHHHH---HhccccchHHHHHHHHHHHHhcCCCCEEEEECCCCchhcccccccce-EEEEeecccccccccc
Confidence 4688888877754 344444444443333221 123568999999999999999999988 79999999 9999988
Q ss_pred HHHHHcCCCCcEEEEEcccccCCCC-CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEccc
Q 016351 118 TLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 118 ~~~~~~~~~~~v~~i~~d~~~~~~~-~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~ 184 (391)
++. . ..++.+|+++++++ ++||+|+|.. ..+.+-.+...+++.+.++|||||++++..
T Consensus 82 ~~~----~---~~~~~~~~~~l~~~~~~fD~ii~~~--~~~~~~~d~~~~l~~i~r~Lk~gG~~ii~~ 140 (246)
T d2avna1 82 EKG----V---KNVVEAKAEDLPFPSGAFEAVLALG--DVLSYVENKDKAFSEIRRVLVPDGLLIATV 140 (246)
T ss_dssp HHT----C---SCEEECCTTSCCSCTTCEEEEEECS--SHHHHCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccc----c---cccccccccccccccccccceeeec--chhhhhhhHHHHHHHHHhhcCcCcEEEEEE
Confidence 752 2 24678999999876 8999999832 222222356778999999999999998754
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=99.69 E-value=9.7e-17 Score=146.96 Aligned_cols=114 Identities=21% Similarity=0.159 Sum_probs=95.6
Q ss_pred HHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-
Q 016351 66 YFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP- 142 (391)
Q Consensus 66 ~~~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~- 142 (391)
+.+.+.......++.+|||||||+|.++..+++. |+ +|+|||+| .|++.|+++.+..|+.++++++++|+.+++++
T Consensus 55 ~~~~l~~~~~l~~~~~vLDiGcG~G~~~~~la~~~~~-~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l~~~~ 133 (282)
T d2o57a1 55 LASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKFGV-SIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCED 133 (282)
T ss_dssp HHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSCT
T ss_pred HHHHHHHhcCCCCCCEEEEeCCCCcHHHhhhhccCCc-EEEEEeccchhhhhhhcccccccccccccccccccccccccc
Confidence 3344555555667899999999999999999886 65 89999999 89999999999999998999999999999877
Q ss_pred CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 143 EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 143 ~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
++||+|+|..+.+++ .++..++.++.++|||||++++.
T Consensus 134 ~sfD~V~~~~~l~h~---~d~~~~l~~~~~~LkpgG~l~~~ 171 (282)
T d2o57a1 134 NSYDFIWSQDAFLHS---PDKLKVFQECARVLKPRGVMAIT 171 (282)
T ss_dssp TCEEEEEEESCGGGC---SCHHHHHHHHHHHEEEEEEEEEE
T ss_pred cccchhhccchhhhc---cCHHHHHHHHHHhcCCCcEEEEE
Confidence 899999984332222 35678999999999999998865
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.67 E-value=1.8e-16 Score=136.10 Aligned_cols=109 Identities=19% Similarity=0.286 Sum_probs=91.9
Q ss_pred HHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-Ccc
Q 016351 68 NSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKV 145 (391)
Q Consensus 68 ~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~-~~~ 145 (391)
..+...+...++.+|||||||+|.+++.+|+.+. +|+|+|++ .+++.|+++++.+++.++|+++++|+.+...+ +.|
T Consensus 23 ~~il~~l~~~~g~~VLDiGcGsG~~s~~lA~~~~-~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~~~~~~~~~ 101 (186)
T d1l3ia_ 23 CLIMCLAEPGKNDVAVDVGCGTGGVTLELAGRVR-RVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKIPDI 101 (186)
T ss_dssp HHHHHHHCCCTTCEEEEESCTTSHHHHHHHTTSS-EEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTSCCE
T ss_pred HHHHHhcCCCCCCEEEEEECCeEcccccccccce-EEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchhhcccccCCc
Confidence 4444555667899999999999999999998755 89999999 99999999999999988899999999887655 899
Q ss_pred cEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 146 DVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 146 D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
|+|++.... ..+..+++.+.+.|||||+++..
T Consensus 102 D~v~~~~~~------~~~~~~~~~~~~~LkpgG~lvi~ 133 (186)
T d1l3ia_ 102 DIAVVGGSG------GELQEILRIIKDKLKPGGRIIVT 133 (186)
T ss_dssp EEEEESCCT------TCHHHHHHHHHHTEEEEEEEEEE
T ss_pred CEEEEeCcc------ccchHHHHHHHHHhCcCCEEEEE
Confidence 999985421 23567889999999999998753
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=99.66 E-value=2.6e-16 Score=141.70 Aligned_cols=107 Identities=22% Similarity=0.259 Sum_probs=91.8
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC--CCcccEEEEcc-
Q 016351 77 FQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL--PEKVDVIISEW- 152 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~--~~~~D~Ivse~- 152 (391)
.++++|||||||+|..+..+++.+.++|+|||+| .|++.|+++.+..+...++.++++|+....+ .++||+|+|..
T Consensus 23 ~~~~~VLDlGCG~G~~~~~~~~~~~~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~~~fD~V~~~~~ 102 (252)
T d1ri5a_ 23 KRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQFS 102 (252)
T ss_dssp CTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEESC
T ss_pred CCcCEEEEecccCcHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhcccccccceEEEEcce
Confidence 4678999999999999999999888789999999 9999999999888887789999999976544 47899999954
Q ss_pred ccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 153 MGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 153 ~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
+.+.+..+..+..++..+.++|+|||++|..
T Consensus 103 l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~ 133 (252)
T d1ri5a_ 103 FHYAFSTSESLDIAQRNIARHLRPGGYFIMT 133 (252)
T ss_dssp GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred eeecCCCHHHHHHHHHHHhceeCCCCEEEEE
Confidence 4455556667888999999999999998864
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.66 E-value=5e-16 Score=134.60 Aligned_cols=104 Identities=20% Similarity=0.263 Sum_probs=90.4
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEccccc
Q 016351 77 FQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMGY 155 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~~D~Ivse~~~~ 155 (391)
.++.+|||||||+|..+..+++.|. +|+|||+| .|++.|+++++..++++ +++...|+.++.++++||+|+|..+.+
T Consensus 29 ~~~grvLDiGcG~G~~~~~la~~g~-~v~gvD~s~~~l~~a~~~~~~~~~~~-~~~~~~d~~~~~~~~~fD~I~~~~~~~ 106 (198)
T d2i6ga1 29 VAPGRTLDLGCGNGRNSLYLAANGY-DVTAWDKNPASMANLERIKAAEGLDN-LQTDLVDLNTLTFDGEYDFILSTVVMM 106 (198)
T ss_dssp SCSCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCTT-EEEEECCTTTCCCCCCEEEEEEESCGG
T ss_pred CCCCcEEEECCCCCHHHHHHHHHhh-hhccccCcHHHHHHHHHHhhhccccc-hhhhheecccccccccccEEEEeeeee
Confidence 4556999999999999999999998 79999999 89999999999999875 999999999988889999999965555
Q ss_pred cccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 156 FLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 156 ~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
++.. .....++..+.++|+|||+++..
T Consensus 107 ~~~~-~~~~~~l~~~~~~L~pgG~~~~~ 133 (198)
T d2i6ga1 107 FLEA-QTIPGLIANMQRCTKPGGYNLIV 133 (198)
T ss_dssp GSCT-THHHHHHHHHHHTEEEEEEEEEE
T ss_pred cCCH-HHHHHHHHHHHHHcCCCcEEEEE
Confidence 5443 35778999999999999998763
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.62 E-value=1e-15 Score=132.20 Aligned_cols=110 Identities=20% Similarity=0.251 Sum_probs=91.2
Q ss_pred HHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCC-cEEEEEcccccCCCCCcccE
Q 016351 70 IFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQD-VVEVIEGSVEDIVLPEKVDV 147 (391)
Q Consensus 70 i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~-~v~~i~~d~~~~~~~~~~D~ 147 (391)
+.+.+...++.+|||+|||+|.+++.+++.+. +|+++|+| .+++.|+++++.+++.+ +++++.+|+.+...+++||+
T Consensus 44 Li~~l~~~~~~~VLDiGcG~G~~~~~la~~~~-~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~~~~~~~fD~ 122 (194)
T d1dusa_ 44 LVENVVVDKDDDILDLGCGYGVIGIALADEVK-STTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVKDRKYNK 122 (194)
T ss_dssp HHHHCCCCTTCEEEEETCTTSHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCTTSCEEE
T ss_pred HHHhCCcCCCCeEEEEeecCChhHHHHHhhcc-ccceeeeccccchhHHHHHHHhCCccceEEEEEcchhhhhccCCceE
Confidence 44455667889999999999999999998765 89999999 89999999999999875 69999999987444489999
Q ss_pred EEEccccccccCcchHHHHHHHHhccccCCeEEEc
Q 016351 148 IISEWMGYFLLRESMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 148 Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~ 182 (391)
|+|+++.+.. ......+++.+.++|+|||.+++
T Consensus 123 Ii~~~p~~~~--~~~~~~~l~~~~~~LkpgG~l~i 155 (194)
T d1dusa_ 123 IITNPPIRAG--KEVLHRIIEEGKELLKDNGEIWV 155 (194)
T ss_dssp EEECCCSTTC--HHHHHHHHHHHHHHEEEEEEEEE
T ss_pred EEEcccEEec--chhhhhHHHHHHHhcCcCcEEEE
Confidence 9998764332 23457789999999999998864
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=99.62 E-value=6.6e-16 Score=138.43 Aligned_cols=109 Identities=24% Similarity=0.351 Sum_probs=89.5
Q ss_pred HHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC
Q 016351 64 DAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP 142 (391)
Q Consensus 64 ~~~~~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~ 142 (391)
..-.+++.... .++++|||+|||+|.+++.+++.|+ +|+|+|+| .+++.|+++++.|++. ++++++|+.+....
T Consensus 108 ~l~l~~l~~~~--~~g~~VLDiGcGsG~l~i~aa~~g~-~V~gvDis~~av~~A~~na~~n~~~--~~~~~~d~~~~~~~ 182 (254)
T d2nxca1 108 RLALKALARHL--RPGDKVLDLGTGSGVLAIAAEKLGG-KALGVDIDPMVLPQAEANAKRNGVR--PRFLEGSLEAALPF 182 (254)
T ss_dssp HHHHHHHHHHC--CTTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCGGGHHHHHHHHHHTTCC--CEEEESCHHHHGGG
T ss_pred hHHHHHHHhhc--CccCEEEEcccchhHHHHHHHhcCC-EEEEEECChHHHHHHHHHHHHcCCc--eeEEeccccccccc
Confidence 34445555543 5789999999999999999999987 79999999 9999999999999996 67899998775434
Q ss_pred CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 143 EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 143 ~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
++||+|+++... ..+..++..+.++|||||+++.+
T Consensus 183 ~~fD~V~ani~~------~~l~~l~~~~~~~LkpGG~lilS 217 (254)
T d2nxca1 183 GPFDLLVANLYA------ELHAALAPRYREALVPGGRALLT 217 (254)
T ss_dssp CCEEEEEEECCH------HHHHHHHHHHHHHEEEEEEEEEE
T ss_pred cccchhhhcccc------ccHHHHHHHHHHhcCCCcEEEEE
Confidence 899999986532 23567788899999999999864
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.62 E-value=3.1e-16 Score=138.38 Aligned_cols=106 Identities=19% Similarity=0.219 Sum_probs=87.9
Q ss_pred CCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-CcccEEEEccc
Q 016351 76 HFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIISEWM 153 (391)
Q Consensus 76 ~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~-~~~D~Ivse~~ 153 (391)
..++.+|||||||+|.++..+++.+..+|+|||+| .|++.|+++++..+..+ ++++++|++++.++ ++||+|++..+
T Consensus 58 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~ak~~~~~~~~~~-~~f~~~d~~~~~~~~~~fD~I~~~~~ 136 (222)
T d2ex4a1 58 KTGTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRV-RNYFCCGLQDFTPEPDSYDVIWIQWV 136 (222)
T ss_dssp CCCCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGGGE-EEEEECCGGGCCCCSSCEEEEEEESC
T ss_pred CCCCCEEEEeccCCCHhhHHHHHhcCCEEEEeecCHHHhhccccccccccccc-cccccccccccccccccccccccccc
Confidence 34568999999999999998876666689999999 99999999988877654 89999999998865 89999999554
Q ss_pred cccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 154 GYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 154 ~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
.+++..+ .+..++..++++|+|||.+++.
T Consensus 137 l~h~~~~-~~~~~l~~i~~~Lk~~G~~~i~ 165 (222)
T d2ex4a1 137 IGHLTDQ-HLAEFLRRCKGSLRPNGIIVIK 165 (222)
T ss_dssp GGGSCHH-HHHHHHHHHHHHEEEEEEEEEE
T ss_pred cccchhh-hhhhHHHHHHHhcCCcceEEEE
Confidence 4444332 3567899999999999999865
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=99.61 E-value=3.7e-15 Score=131.60 Aligned_cols=105 Identities=17% Similarity=0.264 Sum_probs=88.2
Q ss_pred CCCCEEEEECCcccHHHHHHHHc---CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEcc
Q 016351 77 FQGKTVLDVGTGSGILAIWSAQA---GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEW 152 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~l~~~~a~~---g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~~D~Ivse~ 152 (391)
.++.+|||||||+|.++..+++. ...+|+|||+| +|++.|+++++..+....+++..+|+.+++. .++|+|+|..
T Consensus 38 ~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~~~-~~~d~i~~~~ 116 (225)
T d1im8a_ 38 TADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEI-KNASMVILNF 116 (225)
T ss_dssp CTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTCCC-CSEEEEEEES
T ss_pred CCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhcccc-ccceeeEEee
Confidence 46789999999999999999874 23389999999 9999999999988888889999999988754 6889999865
Q ss_pred ccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 153 MGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 153 ~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
+.+++.. .+...++++++++|||||.+++.
T Consensus 117 ~l~~~~~-~d~~~~l~~i~~~LkpgG~li~~ 146 (225)
T d1im8a_ 117 TLQFLPP-EDRIALLTKIYEGLNPNGVLVLS 146 (225)
T ss_dssp CGGGSCG-GGHHHHHHHHHHHEEEEEEEEEE
T ss_pred eccccCh-hhHHHHHHHHHHhCCCCceeecc
Confidence 5555433 35778999999999999999874
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.59 E-value=5.9e-15 Score=134.38 Aligned_cols=113 Identities=17% Similarity=0.154 Sum_probs=95.2
Q ss_pred HHHHhcCCCCCCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcc
Q 016351 68 NSIFQNKHHFQGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKV 145 (391)
Q Consensus 68 ~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~~ 145 (391)
+.+.+.+...++.+|||||||.|.++..+++. |+ +|+|||+| .+++.|+++++..++..++.+...|.+++ +++|
T Consensus 42 ~~~~~~l~l~~g~~VLDiGCG~G~~a~~~a~~~g~-~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~~~--~~~f 118 (280)
T d2fk8a1 42 DLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFDV-NVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDF--AEPV 118 (280)
T ss_dssp HHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGC--CCCC
T ss_pred HHHHHHcCCCCCCEEEEecCCchHHHHHHHHhCce-eEEEecchHHHHHHHHHHHHhhccccchhhhhhhhhhh--ccch
Confidence 44566667778999999999999999999887 66 89999999 99999999999999998899999998876 4789
Q ss_pred cEEEEccccccccCcchHHHHHHHHhccccCCeEEEccc
Q 016351 146 DVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 146 D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~ 184 (391)
|.|+|-.+...+.. ..++.+++.+.++|||||++++..
T Consensus 119 D~i~si~~~eh~~~-~~~~~~f~~i~~~LkpgG~~~i~~ 156 (280)
T d2fk8a1 119 DRIVSIEAFEHFGH-ENYDDFFKRCFNIMPADGRMTVQS 156 (280)
T ss_dssp SEEEEESCGGGTCG-GGHHHHHHHHHHHSCTTCEEEEEE
T ss_pred hhhhHhhHHHHhhh-hhHHHHHHHHHhccCCCceEEEEE
Confidence 99999544333332 357889999999999999998764
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=99.57 E-value=1.7e-15 Score=130.37 Aligned_cols=108 Identities=12% Similarity=0.013 Sum_probs=86.2
Q ss_pred CCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCC-----------CCcEEEEEcccccCCC
Q 016351 74 KHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNL-----------QDVVEVIEGSVEDIVL 141 (391)
Q Consensus 74 ~~~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~-----------~~~v~~i~~d~~~~~~ 141 (391)
+...++.+|||+|||+|..+..+|+.|. +|+|+|+| .|++.|+++++..+. ...++++++|+.++..
T Consensus 16 l~~~~~~rvLd~GCG~G~~a~~la~~G~-~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~ 94 (201)
T d1pjza_ 16 LNVVPGARVLVPLCGKSQDMSWLSGQGY-HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTA 94 (201)
T ss_dssp HCCCTTCEEEETTTCCSHHHHHHHHHCC-EEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTH
T ss_pred cCCCCCCEEEEecCcCCHHHHHHHHcCC-ceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceeccccccccc
Confidence 3456889999999999999999999998 79999999 999999998865432 1236788899888754
Q ss_pred C--CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 142 P--EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 142 ~--~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
. ..+|+|++..+.+.+.. .....++..+.++|||||.+++.
T Consensus 95 ~~~~~~D~i~~~~~l~~l~~-~~~~~~~~~i~~~LkpgG~l~l~ 137 (201)
T d1pjza_ 95 RDIGHCAAFYDRAAMIALPA-DMRERYVQHLEALMPQACSGLLI 137 (201)
T ss_dssp HHHHSEEEEEEESCGGGSCH-HHHHHHHHHHHHHSCSEEEEEEE
T ss_pred ccccceeEEEEEeeeEecch-hhhHHHHHHHHHhcCCCcEEEEE
Confidence 3 68999998655444433 34677899999999999988753
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.56 E-value=3.7e-15 Score=136.95 Aligned_cols=120 Identities=18% Similarity=0.147 Sum_probs=87.5
Q ss_pred HHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCC---cEEEEEccccc
Q 016351 63 MDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQD---VVEVIEGSVED 138 (391)
Q Consensus 63 ~~~~~~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~---~v~~i~~d~~~ 138 (391)
...+.+.+...+...++++|||||||+|.++..+++.|+ +|+|+|+| .|++.|+++....+... ...+...++..
T Consensus 41 ~~~~~~~l~~~l~~~~~~~vLD~GcG~G~~~~~la~~g~-~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (292)
T d1xvaa_ 41 TAEYKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEEGF-SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLT 119 (292)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEESSCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGG
T ss_pred HHHHHHHHHHHhhhcCCCEEEEecCCCcHHHHHHHHcCC-eeeeccCchHHHHHHHHHHHhcccccccceeeeeeccccc
Confidence 333444444443344568999999999999999999997 79999999 99999999988776541 24455555543
Q ss_pred C----CCCCcccEEEEc--cccccccC---cchHHHHHHHHhccccCCeEEEcc
Q 016351 139 I----VLPEKVDVIISE--WMGYFLLR---ESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 139 ~----~~~~~~D~Ivse--~~~~~~~~---e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
+ +..++||+|+|- .+.++... ...+..+++++.++|||||++|+.
T Consensus 120 ~~~~~~~~~~fd~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~ 173 (292)
T d1xvaa_ 120 LDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVID 173 (292)
T ss_dssp HHHHSCCTTCEEEEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred cccccCCCCCceEEEEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEEe
Confidence 2 334789999983 34444322 235678999999999999999875
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.56 E-value=3e-15 Score=123.97 Aligned_cols=105 Identities=20% Similarity=0.171 Sum_probs=86.4
Q ss_pred CCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccC--CCCCcccEEEEcc
Q 016351 76 HFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDI--VLPEKVDVIISEW 152 (391)
Q Consensus 76 ~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~--~~~~~~D~Ivse~ 152 (391)
..++++|||+|||||.+++.++..|+++|++||.+ .+++.++++++.+++.++++++++|+..+ ...++||+|++++
T Consensus 12 ~~~g~~vlDl~~GtG~~~iea~~rga~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~l~~~~~~fDiIf~DP 91 (152)
T d2esra1 12 YFNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDP 91 (152)
T ss_dssp CCCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECC
T ss_pred hCCCCeEEEcCCccCHHHHHHHHhCcceeeeehhchhhhhhhhhhhhhcccccchhhhcccccccccccccccceeEech
Confidence 35789999999999999999999999999999999 89999999999999999999999998874 2237899999987
Q ss_pred ccccccCcchHHHHHHHH--hccccCCeEEEccc
Q 016351 153 MGYFLLRESMFDSVICAR--DRWLKPTGVMYPSH 184 (391)
Q Consensus 153 ~~~~~~~e~~l~~~l~~~--~~~L~~gG~ii~~~ 184 (391)
.-.. ......++.+ .++|+|+|++++..
T Consensus 92 Py~~----~~~~~~l~~i~~~~~L~~~g~iiiE~ 121 (152)
T d2esra1 92 PYAK----ETIVATIEALAAKNLLSEQVMVVCET 121 (152)
T ss_dssp SSHH----HHHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred hhcc----chHHHHHHHHHHCCCcCCCeEEEEEe
Confidence 5222 2233344433 47899999998753
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=99.56 E-value=5.1e-15 Score=130.73 Aligned_cols=99 Identities=21% Similarity=0.293 Sum_probs=81.0
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEccccc
Q 016351 77 FQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMGY 155 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~~D~Ivse~~~~ 155 (391)
.++.+|||||||+|.++..+++.|. +|+|||+| .+++.|+++.. ++++++++++.++.++++||+|+|..+-+
T Consensus 19 ~~~~~VLDiGcG~G~~~~~l~~~g~-~v~giD~s~~~i~~a~~~~~-----~~~~~~~~~~~~~~~~~~fD~I~~~~vle 92 (225)
T d2p7ia1 19 FRPGNLLELGSFKGDFTSRLQEHFN-DITCVEASEEAISHAQGRLK-----DGITYIHSRFEDAQLPRRYDNIVLTHVLE 92 (225)
T ss_dssp CCSSCEEEESCTTSHHHHHHTTTCS-CEEEEESCHHHHHHHHHHSC-----SCEEEEESCGGGCCCSSCEEEEEEESCGG
T ss_pred CCCCcEEEEeCCCcHHHHHHHHcCC-eEEEEeCcHHHhhhhhcccc-----cccccccccccccccccccccccccceeE
Confidence 4567899999999999999999887 69999999 89999987643 34999999999988889999999843322
Q ss_pred cccCcchHHHHHHHHh-ccccCCeEEEccc
Q 016351 156 FLLRESMFDSVICARD-RWLKPTGVMYPSH 184 (391)
Q Consensus 156 ~~~~e~~l~~~l~~~~-~~L~~gG~ii~~~ 184 (391)
++ .+...++.++. ++|+|||.+++..
T Consensus 93 h~---~d~~~~l~~i~~~~Lk~gG~l~i~~ 119 (225)
T d2p7ia1 93 HI---DDPVALLKRINDDWLAEGGRLFLVC 119 (225)
T ss_dssp GC---SSHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred ec---CCHHHHHHHHHHHhcCCCceEEEEe
Confidence 22 35667788776 8999999998653
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=99.56 E-value=6.8e-15 Score=134.37 Aligned_cols=116 Identities=17% Similarity=0.231 Sum_probs=92.0
Q ss_pred HHHHHHHhcC-CCCCCCEEEEECCcccHHHHHHHHc-C-CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC
Q 016351 65 AYFNSIFQNK-HHFQGKTVLDVGTGSGILAIWSAQA-G-ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV 140 (391)
Q Consensus 65 ~~~~~i~~~~-~~~~~~~VLDlGcGtG~l~~~~a~~-g-~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~ 140 (391)
.|.+.+...+ ...++.+|||||||+|.++..+++. + ..+|+|+|+| .+++.|+++.+..++. ++++++|+.+++
T Consensus 13 d~l~~l~~~~~~~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~--~~f~~~d~~~~~ 90 (281)
T d2gh1a1 13 DYVSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYD--SEFLEGDATEIE 90 (281)
T ss_dssp HHHHHHHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSSE--EEEEESCTTTCC
T ss_pred HHHHHHHHHHhccCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhccccccccc--cccccccccccc
Confidence 3445454433 3456789999999999999999885 2 2379999999 9999999999887763 999999999988
Q ss_pred CCCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcccc
Q 016351 141 LPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 141 ~~~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~~ 185 (391)
++++||+|+|..+.+++ .++..+++++.+.|||||.++....
T Consensus 91 ~~~~fD~v~~~~~l~~~---~d~~~~l~~~~~~LkpgG~lii~~~ 132 (281)
T d2gh1a1 91 LNDKYDIAICHAFLLHM---TTPETMLQKMIHSVKKGGKIICFEP 132 (281)
T ss_dssp CSSCEEEEEEESCGGGC---SSHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred ccCCceEEEEehhhhcC---CCHHHHHHHHHHHcCcCcEEEEEEC
Confidence 78899999995543333 3567899999999999999885543
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.56 E-value=2.4e-14 Score=130.35 Aligned_cols=115 Identities=22% Similarity=0.239 Sum_probs=95.0
Q ss_pred HHHHhcCCCCCCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcc
Q 016351 68 NSIFQNKHHFQGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKV 145 (391)
Q Consensus 68 ~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~~ 145 (391)
+.+.+.+...++.+|||||||.|.+++.+|+. |+ +|+||.+| ..++.|++++++.++.+++++..+|..+++ ++|
T Consensus 52 ~~~~~~l~l~~G~~VLDiGCG~G~~a~~~a~~~g~-~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~~~~~--~~f 128 (285)
T d1kpga_ 52 DLALGKLGLQPGMTLLDVGCGWGATMMRAVEKYDV-NVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFD--EPV 128 (285)
T ss_dssp HHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCC--CCC
T ss_pred HHHHHHcCCCCCCEEEEecCcchHHHHHHHhcCCc-ceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhhhccc--ccc
Confidence 44556667788999999999999999987776 76 89999999 899999999999999999999999998874 789
Q ss_pred cEEEEccccccccCcchHHHHHHHHhccccCCeEEEcccce
Q 016351 146 DVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHAR 186 (391)
Q Consensus 146 D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~~~ 186 (391)
|.|+|-.+...... .....+++++.++|+|||+++....+
T Consensus 129 D~i~si~~~eh~~~-~~~~~~~~~~~r~LkpgG~~~l~~i~ 168 (285)
T d1kpga_ 129 DRIVSIGAFEHFGH-ERYDAFFSLAHRLLPADGVMLLHTIT 168 (285)
T ss_dssp SEEEEESCGGGTCT-TTHHHHHHHHHHHSCTTCEEEEEEEE
T ss_pred cceeeehhhhhcCc-hhHHHHHHHHHhhcCCCCcEEEEEEe
Confidence 99999333233322 24678999999999999999876543
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.55 E-value=2.9e-14 Score=130.16 Aligned_cols=116 Identities=18% Similarity=0.159 Sum_probs=94.9
Q ss_pred HHHHhcCCCCCCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcc
Q 016351 68 NSIFQNKHHFQGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKV 145 (391)
Q Consensus 68 ~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~~ 145 (391)
+.+.+.+...++.+|||||||.|.++..+|+. |+ +|+||++| ..++.|+++++..++.+++++...|.... +++|
T Consensus 51 ~~~~~~l~l~~G~~VLDiGCG~G~~~~~~a~~~g~-~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~~d~~~~--~~~f 127 (291)
T d1kpia_ 51 KLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYDV-NVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF--DEPV 127 (291)
T ss_dssp HHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC--CCCC
T ss_pred HHHHHhcCCCCCCEEEEecCcchHHHHHHHHhcCc-ceeeccchHHHHHHHHHHHHhhccchhhhhhhhccccc--cccc
Confidence 44556667788999999999999999988765 76 89999999 89999999999999999999999998654 4789
Q ss_pred cEEEE-ccccccccC-----cchHHHHHHHHhccccCCeEEEcccce
Q 016351 146 DVIIS-EWMGYFLLR-----ESMFDSVICARDRWLKPTGVMYPSHAR 186 (391)
Q Consensus 146 D~Ivs-e~~~~~~~~-----e~~l~~~l~~~~~~L~~gG~ii~~~~~ 186 (391)
|.|+| +.+.++... ....+.+++.+.++|||||+++.+..+
T Consensus 128 D~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~i~ 174 (291)
T d1kpia_ 128 DRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTIT 174 (291)
T ss_dssp SEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEEEEE
T ss_pred ceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEEEEe
Confidence 99999 443343321 134688999999999999999876443
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=99.55 E-value=6.5e-15 Score=132.45 Aligned_cols=110 Identities=20% Similarity=0.271 Sum_probs=87.9
Q ss_pred HHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-CcccE
Q 016351 70 IFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVDV 147 (391)
Q Consensus 70 i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~-~~~D~ 147 (391)
+.+.+...+..+|||+|||+|.++..++..+..+|++||+| .|++.|+++.... +.++++++|+.+++++ ++||+
T Consensus 85 fl~~l~~~~~~~vLD~GcG~G~~t~~ll~~~~~~v~~vD~s~~~l~~a~~~~~~~---~~~~~~~~d~~~~~~~~~~fD~ 161 (254)
T d1xtpa_ 85 FIASLPGHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGM---PVGKFILASMETATLPPNTYDL 161 (254)
T ss_dssp HHHTSTTCCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTS---SEEEEEESCGGGCCCCSSCEEE
T ss_pred HHhhCCCCCCCeEEEecccCChhhHHHHhhcCceEEEEcCCHHHHHhhhcccccc---ccceeEEccccccccCCCccce
Confidence 33444555678999999999999988776655589999999 9999999876543 3489999999999876 78999
Q ss_pred EEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 148 IISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 148 Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
|+|..+.+++..+ .+..++.++.++|+|||.+++.
T Consensus 162 I~~~~vl~hl~d~-d~~~~l~~~~~~LkpgG~iii~ 196 (254)
T d1xtpa_ 162 IVIQWTAIYLTDA-DFVKFFKHCQQALTPNGYIFFK 196 (254)
T ss_dssp EEEESCGGGSCHH-HHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEeeccccccchh-hhHHHHHHHHHhcCCCcEEEEE
Confidence 9996655554333 4668899999999999998864
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=99.53 E-value=1.6e-14 Score=125.75 Aligned_cols=122 Identities=20% Similarity=0.236 Sum_probs=86.5
Q ss_pred hhhhhhhhhhhHhhcCChHhHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHH
Q 016351 43 YFCTYAFLYHQKEMLSDRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVK 121 (391)
Q Consensus 43 ~~~~~~~~~~~~~ml~d~~r~~~~~~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~ 121 (391)
.|+.++..|+.. +......+..-.+.+... .++.+|||||||+|.++..++ +++|||+| .|++.|+++
T Consensus 5 ~f~~~a~~Yd~w-~~~~~~~~~~~~~~~~~~---~~~~~vLDiGcG~G~~~~~~~-----~~~giD~s~~~~~~a~~~-- 73 (208)
T d1vlma_ 5 IFERFVNEYERW-FLVHRFAYLSELQAVKCL---LPEGRGVEIGVGTGRFAVPLK-----IKIGVEPSERMAEIARKR-- 73 (208)
T ss_dssp HHHHTHHHHHHH-HHHTHHHHHHHHHHHHHH---CCSSCEEEETCTTSTTHHHHT-----CCEEEESCHHHHHHHHHT--
T ss_pred HHHHHHHHHHHH-HHHhHHHHHHHHHHHHhh---CCCCeEEEECCCCcccccccc-----eEEEEeCChhhccccccc--
Confidence 566666666442 122222222223344443 345679999999999877663 57999999 899988763
Q ss_pred HcCCCCcEEEEEcccccCCCC-CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEccc
Q 016351 122 ANNLQDVVEVIEGSVEDIVLP-EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 122 ~~~~~~~v~~i~~d~~~~~~~-~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~ 184 (391)
.++++++|+++++++ ++||+|+|..+.+++ .++..+++++.++|+|||.+++..
T Consensus 74 ------~~~~~~~d~~~l~~~~~~fD~I~~~~~l~h~---~d~~~~l~~~~~~L~pgG~l~i~~ 128 (208)
T d1vlma_ 74 ------GVFVLKGTAENLPLKDESFDFALMVTTICFV---DDPERALKEAYRILKKGGYLIVGI 128 (208)
T ss_dssp ------TCEEEECBTTBCCSCTTCEEEEEEESCGGGS---SCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ------ccccccccccccccccccccccccccccccc---cccccchhhhhhcCCCCceEEEEe
Confidence 289999999999876 899999995433333 357789999999999999988653
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.52 E-value=1.7e-14 Score=127.71 Aligned_cols=120 Identities=13% Similarity=-0.065 Sum_probs=92.8
Q ss_pred hHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcC----------------
Q 016351 62 RMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANN---------------- 124 (391)
Q Consensus 62 r~~~~~~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~---------------- 124 (391)
.+..+.+.+.+.+...++.+|||+|||+|..+..+|+.|+ +|+|||+| .+++.|++......
T Consensus 29 ~~~~l~~~~~~~l~~~~~~rvLd~GCG~G~~a~~LA~~G~-~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~ 107 (229)
T d2bzga1 29 GHQLLKKHLDTFLKGKSGLRVFFPLCGKAVEMKWFADRGH-SVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKS 107 (229)
T ss_dssp CCHHHHHHHHHHHTTCCSCEEEETTCTTCTHHHHHHHTTC-EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEE
T ss_pred CCHHHHHHHHHhcCCCCCCEEEEeCCCCcHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhhccccccchhcccccceeee
Confidence 3455555565555556788999999999999999999999 79999999 89998887765321
Q ss_pred CCCcEEEEEcccccCCC--CCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 125 LQDVVEVIEGSVEDIVL--PEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 125 ~~~~v~~i~~d~~~~~~--~~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
...+++++++|+.++.. .+.||+|+...+.+.+.. .....++..+.++|+|||.++..
T Consensus 108 ~~~~v~~~~~d~~~l~~~~~~~fd~i~~~~~l~~~~~-~~r~~~~~~~~~~LkpgG~~~l~ 167 (229)
T d2bzga1 108 SSGNISLYCCSIFDLPRTNIGKFDMIWDRGALVAINP-GDRKCYADTMFSLLGKKFQYLLC 167 (229)
T ss_dssp TTSSEEEEESCGGGGGGSCCCCEEEEEESSSTTTSCG-GGHHHHHHHHHHTEEEEEEEEEE
T ss_pred cCCcEEEEEcchhhccccccCceeEEEEEEEEEeccc-hhhHHHHHHHHhhcCCcceEEEE
Confidence 12359999999988753 378999998554444433 35678899999999999987744
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=99.50 E-value=8.7e-14 Score=124.91 Aligned_cols=114 Identities=25% Similarity=0.278 Sum_probs=91.3
Q ss_pred HHHhcCCCCCCCEEEEECCcccHHHHHHHHcC-CCeEEEEechHHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccE
Q 016351 69 SIFQNKHHFQGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDV 147 (391)
Q Consensus 69 ~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g-~~~V~avD~s~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~~D~ 147 (391)
.+...++..+.++|||||||+|.++..+++.. ..+++++|++++++.+++++...++.++|+++.+|+.+. .+.+||+
T Consensus 71 ~~~~~~d~~~~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~rv~~~~~D~~~~-~~~~~D~ 149 (253)
T d1tw3a2 71 APAAAYDWTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEMAGTVDTARSYLKDEGLSDRVDVVEGDFFEP-LPRKADA 149 (253)
T ss_dssp HHHHHSCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECTTHHHHHHHHHHHTTCTTTEEEEECCTTSC-CSSCEEE
T ss_pred HHHhhcCCccCCEEEEeCCCCCHHHHHHHHhcceeEEEEccCHHHHHHHHHHHHHhhcccchhhccccchhh-cccchhh
Confidence 34444555566899999999999999999873 347999998888999999999999999999999998764 3468999
Q ss_pred EEEccccccccCcchHHHHHHHHhccccCCeEEEccc
Q 016351 148 IISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 148 Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~ 184 (391)
|++..+.+.+..+ ....+++++++.|||||.+++..
T Consensus 150 v~~~~vlh~~~d~-~~~~~L~~~~~~LkPGG~l~i~e 185 (253)
T d1tw3a2 150 IILSFVLLNWPDH-DAVRILTRCAEALEPGGRILIHE 185 (253)
T ss_dssp EEEESCGGGSCHH-HHHHHHHHHHHTEEEEEEEEEEE
T ss_pred eeeccccccCCch-hhHHHHHHHHHhcCCCcEEEEEe
Confidence 9986554544333 34578999999999999988643
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=99.49 E-value=4.7e-14 Score=125.63 Aligned_cols=107 Identities=18% Similarity=0.132 Sum_probs=86.5
Q ss_pred HHHhcCCCCCCCEEEEECCcccHHHHHHHHc-C-CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcc
Q 016351 69 SIFQNKHHFQGKTVLDVGTGSGILAIWSAQA-G-ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKV 145 (391)
Q Consensus 69 ~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~-g-~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~~ 145 (391)
.|...+...++.+|||+|||+|.+++.+|++ + ..+|+++|.+ ++++.|+++++.++..+++++.++|+.+....+.|
T Consensus 76 ~Ii~~l~i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~~~~~~f 155 (250)
T d1yb2a1 76 YIIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFISDQMY 155 (250)
T ss_dssp -----CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCCSCCE
T ss_pred HHHHHcCCCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeeccccccee
Confidence 4556667788999999999999999999986 3 4589999999 99999999999887767799999999987555889
Q ss_pred cEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 146 DVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 146 D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
|.|+++... ...+++.+.+.|||||+++..
T Consensus 156 D~V~ld~p~--------p~~~l~~~~~~LKpGG~lv~~ 185 (250)
T d1yb2a1 156 DAVIADIPD--------PWNHVQKIASMMKPGSVATFY 185 (250)
T ss_dssp EEEEECCSC--------GGGSHHHHHHTEEEEEEEEEE
T ss_pred eeeeecCCc--------hHHHHHHHHHhcCCCceEEEE
Confidence 999986432 234678889999999998853
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.47 E-value=1.2e-13 Score=128.43 Aligned_cols=110 Identities=25% Similarity=0.315 Sum_probs=91.1
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC-----CCCcccEEEE
Q 016351 77 FQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV-----LPEKVDVIIS 150 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~-----~~~~~D~Ivs 150 (391)
.++++|||+|||+|.+++.+++.|+++|+++|+| .+++.|+++++.||+.++++++++|+.+.. ..++||+|++
T Consensus 144 ~~g~~VLDl~~g~G~~si~~a~~ga~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~~~~~~~~~~~~fD~Vi~ 223 (324)
T d2as0a2 144 QPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVL 223 (324)
T ss_dssp CTTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCCeeecccCcccchhhhhhhcCCcEEEeecCCHHHHHHHHHHHHHcCCCccceeeechhhhhhHHHHhccCCCCchhc
Confidence 4689999999999999999999999899999999 999999999999999888999999987641 2368999999
Q ss_pred ccccccccCc------chHHHHHHHHhccccCCeEEEcccce
Q 016351 151 EWMGYFLLRE------SMFDSVICARDRWLKPTGVMYPSHAR 186 (391)
Q Consensus 151 e~~~~~~~~e------~~l~~~l~~~~~~L~~gG~ii~~~~~ 186 (391)
++........ .....++..+.++|+|||+++.+.++
T Consensus 224 DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~s 265 (324)
T d2as0a2 224 DPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCS 265 (324)
T ss_dssp CCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECC
T ss_pred CCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeCC
Confidence 8864332221 12345777888999999999876554
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.46 E-value=5.5e-14 Score=124.32 Aligned_cols=104 Identities=25% Similarity=0.279 Sum_probs=83.5
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccC--CCC-CcccEEEEcc
Q 016351 77 FQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDI--VLP-EKVDVIISEW 152 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~--~~~-~~~D~Ivse~ 152 (391)
.++.+|||||||+|.++..+++.+..+|++||+| .+++.|+++++..+. ++.++.+++..+ .++ ++||.|+.+.
T Consensus 52 ~~g~~VLdIGcG~G~~a~~~a~~~~~~v~~id~s~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~fD~i~fD~ 129 (229)
T d1zx0a1 52 SKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTH--KVIPLKGLWEDVAPTLPDGHFDGILYDT 129 (229)
T ss_dssp TTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCSS--EEEEEESCHHHHGGGSCTTCEEEEEECC
T ss_pred cCCCeEEEeeccchHHHHHHHHcCCCeEEEeCCCHHHHHHHHHHhhhccc--ccccccccccccccccccccccceeecc
Confidence 4678999999999999999998876689999999 999999999877654 488888887664 334 7899999865
Q ss_pred ccc--cccCcchHHHHHHHHhccccCCeEEEc
Q 016351 153 MGY--FLLRESMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 153 ~~~--~~~~e~~l~~~l~~~~~~L~~gG~ii~ 182 (391)
+.. .+.+..+...+++.+.|+|||||++++
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~r~LkpGG~~~~ 161 (229)
T d1zx0a1 130 YPLSEETWHTHQFNFIKNHAFRLLKPGGVLTY 161 (229)
T ss_dssp CCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEE
T ss_pred cccccccccccCHHHHHHHHHHHcCCCcEEEE
Confidence 433 233334567789999999999999875
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.46 E-value=1.1e-13 Score=124.30 Aligned_cols=106 Identities=17% Similarity=0.089 Sum_probs=87.9
Q ss_pred HHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcc
Q 016351 67 FNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKV 145 (391)
Q Consensus 67 ~~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~~ 145 (391)
+..+...+ .++.+|||+|||+|.+++.+|+.|+++|+|+|+| .+++.++++++.|++.++|+++++|+.++...+.|
T Consensus 98 r~ri~~~~--~~g~~VlD~~aG~G~~~l~~a~~~~~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~~~~~~~~~~ 175 (260)
T d2frna1 98 RVRMAKVA--KPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIA 175 (260)
T ss_dssp HHHHHHHC--CTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCE
T ss_pred HHHHHhhc--CCccEEEECcceEcHHHHHHHHhCCcEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcchHHhccCCCC
Confidence 33454443 4789999999999999999999987799999999 89999999999999999999999999998766889
Q ss_pred cEEEEccccccccCcchHHHHHHHHhccccCCeEEE
Q 016351 146 DVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMY 181 (391)
Q Consensus 146 D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii 181 (391)
|.|+++++... ..++..+.++|++||.+.
T Consensus 176 D~Ii~~~p~~~-------~~~l~~a~~~l~~gG~lh 204 (260)
T d2frna1 176 DRILMGYVVRT-------HEFIPKALSIAKDGAIIH 204 (260)
T ss_dssp EEEEECCCSSG-------GGGHHHHHHHEEEEEEEE
T ss_pred CEEEECCCCch-------HHHHHHHHhhcCCCCEEE
Confidence 99998654322 134556667899999874
|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=99.44 E-value=5.1e-13 Score=120.32 Aligned_cols=126 Identities=17% Similarity=0.203 Sum_probs=95.5
Q ss_pred cCChHhHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEc
Q 016351 57 LSDRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEG 134 (391)
Q Consensus 57 l~d~~r~~~~~~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~ 134 (391)
|--...++.+.+.+..... .++.+|||+|||+|.+++.+++. ...+|+|+|+| .+++.|+++++.+++++ |+++++
T Consensus 88 lIPRpeTE~lv~~~l~~~~-~~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~~Na~~~~~~~-v~~~~~ 165 (274)
T d2b3ta1 88 LIPRPDTECLVEQALARLP-EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKN-IHILQS 165 (274)
T ss_dssp CCCCTTHHHHHHHHHHHSC-SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCS-EEEECC
T ss_pred cccccchhhhhhhHhhhhc-ccccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHHHHHHHhCccc-ceeeec
Confidence 3334456666655544433 35578999999999999988876 45589999999 99999999999999965 999999
Q ss_pred ccccCCCCCcccEEEEcccccccc-----------Cc------------chHHHHHHHHhccccCCeEEEcccc
Q 016351 135 SVEDIVLPEKVDVIISEWMGYFLL-----------RE------------SMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 135 d~~~~~~~~~~D~Ivse~~~~~~~-----------~e------------~~l~~~l~~~~~~L~~gG~ii~~~~ 185 (391)
|+.+....++||+|+|++. |... +| ..+..++..+.++|+|||.+++...
T Consensus 166 d~~~~~~~~~fDlIvsNPP-Yi~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~lEig 238 (274)
T d2b3ta1 166 DWFSALAGQQFAMIVSNPP-YIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHG 238 (274)
T ss_dssp STTGGGTTCCEEEEEECCC-CBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECC
T ss_pred ccccccCCCceeEEEecch-hhhhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 9887543479999999874 3211 11 1345688888999999999987543
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.43 E-value=2.5e-13 Score=121.65 Aligned_cols=108 Identities=29% Similarity=0.367 Sum_probs=89.1
Q ss_pred HHHHHhcCCCCCCCEEEEECCcccHHHHHHHHc-C-CCeEEEEech-HHHHHHHHHHHHc--CCCCcEEEEEcccccCCC
Q 016351 67 FNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQA-G-ARKVYAVEAT-KMSDHARTLVKAN--NLQDVVEVIEGSVEDIVL 141 (391)
Q Consensus 67 ~~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~-g-~~~V~avD~s-~~~~~a~~~~~~~--~~~~~v~~i~~d~~~~~~ 141 (391)
...|...+...++.+|||+|||+|.+++.+|++ | ..+|+++|++ ++++.|+++++.. +..++++++++|+.+..+
T Consensus 85 ~s~Ii~~l~i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~~~~~ 164 (264)
T d1i9ga_ 85 AAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSEL 164 (264)
T ss_dssp HHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCC
T ss_pred HHHHHHHhCCCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEecccccccc
Confidence 345666777889999999999999999999997 4 3589999999 9999999998864 344569999999998876
Q ss_pred C-CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEc
Q 016351 142 P-EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 142 ~-~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~ 182 (391)
+ +.||.|+.+.. +...++..+.+.|||||.++.
T Consensus 165 ~~~~fDaV~ldlp--------~P~~~l~~~~~~LkpGG~lv~ 198 (264)
T d1i9ga_ 165 PDGSVDRAVLDML--------APWEVLDAVSRLLVAGGVLMV 198 (264)
T ss_dssp CTTCEEEEEEESS--------CGGGGHHHHHHHEEEEEEEEE
T ss_pred cCCCcceEEEecC--------CHHHHHHHHHhccCCCCEEEE
Confidence 6 89999997642 233567888999999999874
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=99.41 E-value=9.8e-13 Score=114.71 Aligned_cols=105 Identities=22% Similarity=0.147 Sum_probs=82.4
Q ss_pred HHHHhcCCCCCCCEEEEECCcccHHHHHHHHc-C-CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-C
Q 016351 68 NSIFQNKHHFQGKTVLDVGTGSGILAIWSAQA-G-ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-E 143 (391)
Q Consensus 68 ~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~-g-~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~-~ 143 (391)
..+.+.+...++.+|||||||+|.++..+|+. + ..+|+++|++ .+++.|+++++..++.+ +.++++|..+.... +
T Consensus 65 a~~l~~l~l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~n-~~~~~~d~~~~~~~~~ 143 (213)
T d1dl5a1 65 ALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIEN-VIFVCGDGYYGVPEFS 143 (213)
T ss_dssp HHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCS-EEEEESCGGGCCGGGC
T ss_pred HHHHHhhhccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcccc-cccccCchHHcccccc
Confidence 34555666788999999999999999999886 4 3489999999 99999999999999876 88899998875444 7
Q ss_pred cccEEEEccccccccCcchHHHHHHHHhccccCCeEEEc
Q 016351 144 KVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 144 ~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~ 182 (391)
+||+|++...... .+. .+.+.|||||+++.
T Consensus 144 ~fD~I~~~~~~~~-----~p~----~l~~~LkpGG~lv~ 173 (213)
T d1dl5a1 144 PYDVIFVTVGVDE-----VPE----TWFTQLKEGGRVIV 173 (213)
T ss_dssp CEEEEEECSBBSC-----CCH----HHHHHEEEEEEEEE
T ss_pred chhhhhhhccHHH-----hHH----HHHHhcCCCcEEEE
Confidence 8999998543211 222 34466999999874
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=99.39 E-value=1.4e-12 Score=116.94 Aligned_cols=113 Identities=24% Similarity=0.200 Sum_probs=90.8
Q ss_pred HHhcCCCCCCCEEEEECCcccHHHHHHHHcC-CCeEEEEechHHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEE
Q 016351 70 IFQNKHHFQGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVI 148 (391)
Q Consensus 70 i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g-~~~V~avD~s~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~~D~I 148 (391)
+....+....++|||||||+|.++..++++. ..+++++|+.++++.|+++++..++.++++++.+|+.+ +.|..+|+|
T Consensus 73 ~~~~~d~~~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dlp~~~~~a~~~~~~~~~~~ri~~~~~d~~~-~~p~~~D~v 151 (256)
T d1qzza2 73 PADAYDWSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAERARRRFADAGLADRVTVAEGDFFK-PLPVTADVV 151 (256)
T ss_dssp HHHTSCCTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTS-CCSCCEEEE
T ss_pred HHhcCCCccCCEEEEECCCCCHHHHHHHHhhcCcEEEEecChHHHHHHHHHHhhcCCcceeeeeeeeccc-cccccchhh
Confidence 4444444455899999999999999999884 33899999888899999999999999999999999886 445679999
Q ss_pred EEccccccccCcchHHHHHHHHhccccCCeEEEccc
Q 016351 149 ISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 149 vse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~ 184 (391)
++..+.+.+..+ ....+++++++.|||||++++..
T Consensus 152 ~~~~vLh~~~d~-~~~~lL~~i~~~LkpgG~llI~d 186 (256)
T d1qzza2 152 LLSFVLLNWSDE-DALTILRGCVRALEPGGRLLVLD 186 (256)
T ss_dssp EEESCGGGSCHH-HHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hccccccccCcH-HHHHHHHHHHhhcCCcceeEEEE
Confidence 986555544433 35678999999999999888654
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=99.38 E-value=7.6e-13 Score=119.07 Aligned_cols=108 Identities=21% Similarity=0.167 Sum_probs=90.3
Q ss_pred HHHHHhcCCCCCCCEEEEECCcccHHHHHHHHc-C-CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCC
Q 016351 67 FNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQA-G-ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPE 143 (391)
Q Consensus 67 ~~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~-g-~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~ 143 (391)
...|...+...++.+|||+|||+|.++..+|+. + ..+|+++|++ ++++.|+++++..++.+++.+...|+.......
T Consensus 92 ~~~Ii~~l~i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d~~~~~~~~ 171 (266)
T d1o54a_ 92 SSFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFDEK 171 (266)
T ss_dssp HHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCCSCC
T ss_pred HHHHHHhhCCCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEecccccccccc
Confidence 345667777889999999999999999999987 3 3489999999 999999999999999888999999986644447
Q ss_pred cccEEEEccccccccCcchHHHHHHHHhccccCCeEEEc
Q 016351 144 KVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 144 ~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~ 182 (391)
.+|.|+.+.. ....+++.+.++|||||.++.
T Consensus 172 ~~D~V~~d~p--------~p~~~l~~~~~~LKpGG~lv~ 202 (266)
T d1o54a_ 172 DVDALFLDVP--------DPWNYIDKCWEALKGGGRFAT 202 (266)
T ss_dssp SEEEEEECCS--------CGGGTHHHHHHHEEEEEEEEE
T ss_pred ceeeeEecCC--------CHHHHHHHHHhhcCCCCEEEE
Confidence 8999987542 234578889999999999874
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=99.38 E-value=5.5e-13 Score=123.07 Aligned_cols=110 Identities=19% Similarity=0.174 Sum_probs=89.9
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCC-CcEEEEEcccccCC-----CCCcccEEE
Q 016351 77 FQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQ-DVVEVIEGSVEDIV-----LPEKVDVII 149 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~-~~v~~i~~d~~~~~-----~~~~~D~Iv 149 (391)
.++++|||++||+|.+++.++..|+++|++||+| .+++.|+++++.|++. ++++++++|+.+.- ..++||+||
T Consensus 143 ~~g~~VLdlf~~~G~~sl~aa~~ga~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~~l~~~~~~~~~fD~Ii 222 (317)
T d2b78a2 143 AAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDIII 222 (317)
T ss_dssp TBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred hCCCceeecCCCCcHHHHHHHhCCCceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHHHHHHHHHhhcCCCCEEE
Confidence 4689999999999999999999999999999999 8999999999999995 57999999997641 236899999
Q ss_pred Ecccccccc------CcchHHHHHHHHhccccCCeEEEcccce
Q 016351 150 SEWMGYFLL------RESMFDSVICARDRWLKPTGVMYPSHAR 186 (391)
Q Consensus 150 se~~~~~~~------~e~~l~~~l~~~~~~L~~gG~ii~~~~~ 186 (391)
+++...... .......++..+.++|+|||+++.+.++
T Consensus 223 ~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~scs 265 (317)
T d2b78a2 223 IDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNA 265 (317)
T ss_dssp ECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred EcChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 998533211 1123556888889999999999976554
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=99.38 E-value=4.3e-13 Score=124.08 Aligned_cols=108 Identities=23% Similarity=0.309 Sum_probs=86.9
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccC-----CCCCcccEEEE
Q 016351 77 FQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDI-----VLPEKVDVIIS 150 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~-----~~~~~~D~Ivs 150 (391)
.++++|||++||+|.+++.+|+. +++|+++|+| .+++.|+++++.||+.+ ++++++|+.++ ...++||+|++
T Consensus 144 ~~g~rVLDl~~gtG~~s~~~a~g-~~~V~~vD~s~~al~~a~~n~~~ngl~~-~~~i~~d~~~~~~~~~~~~~~fD~Vi~ 221 (318)
T d1wxxa2 144 FRGERALDVFSYAGGFALHLALG-FREVVAVDSSAEALRRAEENARLNGLGN-VRVLEANAFDLLRRLEKEGERFDLVVL 221 (318)
T ss_dssp CCEEEEEEETCTTTHHHHHHHHH-EEEEEEEESCHHHHHHHHHHHHHTTCTT-EEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred hCCCeeeccCCCCcHHHHHHHhc-CCcEEeecchHHHHHHHHHHHHHcCCCC-cceeeccHHHHhhhhHhhhcCCCEEEE
Confidence 46899999999999999998864 5589999999 99999999999999965 99999998774 12378999999
Q ss_pred ccccccccCc------chHHHHHHHHhccccCCeEEEcccce
Q 016351 151 EWMGYFLLRE------SMFDSVICARDRWLKPTGVMYPSHAR 186 (391)
Q Consensus 151 e~~~~~~~~e------~~l~~~l~~~~~~L~~gG~ii~~~~~ 186 (391)
++........ .....++..+.++|+|||+++.+.++
T Consensus 222 DpP~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~scs 263 (318)
T d1wxxa2 222 DPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCS 263 (318)
T ss_dssp CCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred cCCccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 8854332221 22446777888999999999876554
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=99.37 E-value=1.5e-12 Score=117.69 Aligned_cols=91 Identities=20% Similarity=0.205 Sum_probs=73.6
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCC-CeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-CcccEEEEccc
Q 016351 77 FQGKTVLDVGTGSGILAIWSAQAGA-RKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIISEWM 153 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~l~~~~a~~g~-~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~-~~~D~Ivse~~ 153 (391)
.++.+|||||||+|.++..+++.+. .+++|||+| .|++.|++.. .+++++++|+.+++++ +.||+|++...
T Consensus 83 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~~------~~~~~~~~d~~~l~~~~~sfD~v~~~~~ 156 (268)
T d1p91a_ 83 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY------PQVTFCVASSHRLPFSDTSMDAIIRIYA 156 (268)
T ss_dssp TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC------TTSEEEECCTTSCSBCTTCEEEEEEESC
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhccc------ccccceeeehhhccCCCCCEEEEeecCC
Confidence 4668999999999999999998853 489999999 8999887653 2389999999999876 88999998321
Q ss_pred cccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 154 GYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 154 ~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
+. .+.++.|+|||||.++..
T Consensus 157 ---~~-------~~~e~~rvLkpgG~l~~~ 176 (268)
T d1p91a_ 157 ---PC-------KAEELARVVKPGGWVITA 176 (268)
T ss_dssp ---CC-------CHHHHHHHEEEEEEEEEE
T ss_pred ---HH-------HHHHHHHHhCCCcEEEEE
Confidence 11 145678999999999864
|
| >d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase EF2452 species: Enterococcus faecalis [TaxId: 1351]
Probab=99.37 E-value=9.3e-13 Score=111.87 Aligned_cols=105 Identities=19% Similarity=0.189 Sum_probs=85.8
Q ss_pred CCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC-----CCCcccEEE
Q 016351 76 HFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV-----LPEKVDVII 149 (391)
Q Consensus 76 ~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~-----~~~~~D~Iv 149 (391)
..++.+|||++||||.+++.++..|+++|++||.+ .++..++++++.++..++++++++|+..+- ...+||+|+
T Consensus 39 ~~~~~~vLDlfaGsG~~g~ea~srGa~~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D~~~~l~~~~~~~~~fDlIf 118 (182)
T d2fhpa1 39 YFDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVL 118 (182)
T ss_dssp CCSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred hcCCCEEEEcccccccccceeeecchhHHHHHHHHHHHHHHHHHHhhhhhcccccccccccchhhhhhhcccCCCcceEE
Confidence 35789999999999999999999999999999999 999999999999999888999999987641 236899999
Q ss_pred EccccccccCcchHHHHHHHH--hccccCCeEEEccc
Q 016351 150 SEWMGYFLLRESMFDSVICAR--DRWLKPTGVMYPSH 184 (391)
Q Consensus 150 se~~~~~~~~e~~l~~~l~~~--~~~L~~gG~ii~~~ 184 (391)
+++. |. ......++..+ ..+|+++|++++..
T Consensus 119 lDPP-Y~---~~~~~~~l~~i~~~~~L~~~giIi~E~ 151 (182)
T d2fhpa1 119 LDPP-YA---KQEIVSQLEKMLERQLLTNEAVIVCET 151 (182)
T ss_dssp ECCC-GG---GCCHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred echh-hh---hhHHHHHHHHHHHCCCCCCCEEEEEEc
Confidence 9985 22 12234455544 36899999988653
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.37 E-value=1e-12 Score=119.92 Aligned_cols=122 Identities=15% Similarity=0.121 Sum_probs=92.9
Q ss_pred CChHhHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCC-cEEEEEcc
Q 016351 58 SDRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQD-VVEVIEGS 135 (391)
Q Consensus 58 ~d~~r~~~~~~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~-~v~~i~~d 135 (391)
-|...+..+....... ..++++|||++||||.+++.+++.|+ +|++||.| .+++.|+++++.|++.+ +++++++|
T Consensus 114 ~dqr~nr~~~~~~~~~--~~~~~rVLdlf~~tG~~sl~aa~~GA-~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D 190 (309)
T d2igta1 114 PEQIVHWEWLKNAVET--ADRPLKVLNLFGYTGVASLVAAAAGA-EVTHVDASKKAIGWAKENQVLAGLEQAPIRWICED 190 (309)
T ss_dssp GGGHHHHHHHHHHHHH--SSSCCEEEEETCTTCHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSC
T ss_pred cchhHHHHHHHHHHhh--ccCCCeEEEecCCCcHHHHHHHhCCC-eEEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCC
Confidence 3444454444433222 24678999999999999999999998 79999999 99999999999999976 69999999
Q ss_pred cccCC-----CCCcccEEEEcccccccc-------CcchHHHHHHHHhccccCCeEEEc
Q 016351 136 VEDIV-----LPEKVDVIISEWMGYFLL-------RESMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 136 ~~~~~-----~~~~~D~Ivse~~~~~~~-------~e~~l~~~l~~~~~~L~~gG~ii~ 182 (391)
+.++- ..++||+||+++..+... .+..+..++..+.++|+|||.+++
T Consensus 191 ~~~~l~~~~~~~~~fD~IilDPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll 249 (309)
T d2igta1 191 AMKFIQREERRGSTYDIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLV 249 (309)
T ss_dssp HHHHHHHHHHHTCCBSEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEE
T ss_pred HHHhHHHHhhcCCCCCEEEECCCcccccccchhHHHHHHHHHHHHHHHHhcCCCCCEEE
Confidence 97752 237899999998644221 123456677888899999986553
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.36 E-value=1.3e-12 Score=113.52 Aligned_cols=111 Identities=21% Similarity=0.186 Sum_probs=85.1
Q ss_pred HHHHHHHh--cCCCCCCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC
Q 016351 65 AYFNSIFQ--NKHHFQGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV 140 (391)
Q Consensus 65 ~~~~~i~~--~~~~~~~~~VLDlGcGtG~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~ 140 (391)
....+|.. .+...++.+|||||||+|..+..+++. +..+|+|||+| .|++.|+++++..+ ++.++.+|.....
T Consensus 41 klaa~i~~g~~l~lkpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~~---ni~~i~~d~~~~~ 117 (209)
T d1nt2a_ 41 KLAAMILKGHRLKLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERN---NIIPLLFDASKPW 117 (209)
T ss_dssp HHHHHHHTSCCCCCCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCS---SEEEECSCTTCGG
T ss_pred HHHHHHhccccCCCCCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhccC---CceEEEeeccCcc
Confidence 33444543 355678899999999999999999986 55689999999 99999999988764 4999999988864
Q ss_pred CC----CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 141 LP----EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 141 ~~----~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
.. ..+|+|+++. .+......++.++.++|||||.++..
T Consensus 118 ~~~~~~~~vd~v~~~~-----~~~~~~~~~l~~~~~~LkpgG~l~i~ 159 (209)
T d1nt2a_ 118 KYSGIVEKVDLIYQDI-----AQKNQIEILKANAEFFLKEKGEVVIM 159 (209)
T ss_dssp GTTTTCCCEEEEEECC-----CSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ccccccceEEEEEecc-----cChhhHHHHHHHHHHHhccCCeEEEE
Confidence 33 4566666532 12235677899999999999998754
|
| >d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methyltransferase TTHA0928 species: Thermus thermophilus [TaxId: 274]
Probab=99.36 E-value=5.9e-13 Score=111.99 Aligned_cols=103 Identities=17% Similarity=0.152 Sum_probs=77.5
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEccccc--C-CCCCcccEEEEcc
Q 016351 77 FQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVED--I-VLPEKVDVIISEW 152 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~--~-~~~~~~D~Ivse~ 152 (391)
.++.+|||+|||+|.+++.++..|+ +|+++|.+ .+++.++++++.+++.+++....+|... . ...++||+|++++
T Consensus 40 ~~g~~vLDl~~G~G~~~i~a~~~ga-~vv~vD~~~~a~~~~~~N~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~If~DP 118 (171)
T d1ws6a1 40 PRRGRFLDPFAGSGAVGLEAASEGW-EAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMAP 118 (171)
T ss_dssp TTCCEEEEETCSSCHHHHHHHHTTC-EEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEECC
T ss_pred cCCCeEEEeccccchhhhhhhhccc-hhhhcccCHHHHhhhhHHHHhhccccceeeeehhcccccccccCCccceeEEcc
Confidence 4678999999999999999999998 79999999 9999999999999998766555554321 1 1237899999998
Q ss_pred ccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 153 MGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 153 ~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
. |.......+..++. ..+|+|||+++..
T Consensus 119 P-Y~~~~~~~l~~l~~--~~ll~~~g~ivie 146 (171)
T d1ws6a1 119 P-YAMDLAALFGELLA--SGLVEAGGLYVLQ 146 (171)
T ss_dssp C-TTSCTTHHHHHHHH--HTCEEEEEEEEEE
T ss_pred c-cccCHHHHHHHHHH--cCCcCCCeEEEEE
Confidence 5 32222223333333 3689999998854
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.35 E-value=1.9e-13 Score=122.53 Aligned_cols=107 Identities=18% Similarity=0.262 Sum_probs=77.0
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCc---------------------------
Q 016351 77 FQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDV--------------------------- 128 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~--------------------------- 128 (391)
.++.+|||||||+|.+++.+++.+..+|+|+|+| .|++.|+++++.......
T Consensus 50 ~~g~~vLDlGcG~G~~~~~~~~~~~~~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (257)
T d2a14a1 50 LQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRA 129 (257)
T ss_dssp CCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCHhHHHHhccccCcEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHhccccchHHHHHHHHhh
Confidence 4668999999999999888887777789999999 999999999886654310
Q ss_pred -E-EEEEccccc----CCCC-CcccEEEEccc-cccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 129 -V-EVIEGSVED----IVLP-EKVDVIISEWM-GYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 129 -v-~~i~~d~~~----~~~~-~~~D~Ivse~~-~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
+ .....+... ...+ ++||+|++..+ .+....+..+..+++.+.++|||||.+|..
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~LkpGG~li~~ 192 (257)
T d2a14a1 130 AVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTT 192 (257)
T ss_dssp HEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred hhhcccccccccccccccccCCcccEEeehhhHHHhcccHHHHHHHHHHHHhccCCCcEEEEE
Confidence 0 111111111 1222 78999998443 333334446778899999999999998864
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.34 E-value=2.4e-12 Score=113.36 Aligned_cols=115 Identities=14% Similarity=0.079 Sum_probs=83.3
Q ss_pred HHHHHHHHHhc---CCCCCCCEEEEECCcccHHHHHHHHcC-CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccc
Q 016351 63 MDAYFNSIFQN---KHHFQGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVE 137 (391)
Q Consensus 63 ~~~~~~~i~~~---~~~~~~~~VLDlGcGtG~l~~~~a~~g-~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~ 137 (391)
...+..+|... ++..++.+|||||||+|..+..+|+.+ ...|+|||+| .|++.|++++...+ ++.++.+|..
T Consensus 56 rsklaA~i~~gl~~l~ikpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~~~---ni~~i~~d~~ 132 (230)
T d1g8sa_ 56 KSKLAAAIIKGLKVMPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERE---NIIPILGDAN 132 (230)
T ss_dssp TCHHHHHHHTTCCCCCCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCT---TEEEEECCTT
T ss_pred ccHHHHHHHhhHHhCCCCCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhhhc---ccceEEEeec
Confidence 34555666553 446678999999999999999999974 4589999999 99999988876543 3778888877
Q ss_pred cCCC--CCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 138 DIVL--PEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 138 ~~~~--~~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
.... ...+|++++- ..+........++.+++++|||||.++..
T Consensus 133 ~~~~~~~~~~~v~~i~---~~~~~~~~~~~~l~~~~r~LKpgG~~~i~ 177 (230)
T d1g8sa_ 133 KPQEYANIVEKVDVIY---EDVAQPNQAEILIKNAKWFLKKGGYGMIA 177 (230)
T ss_dssp CGGGGTTTCCCEEEEE---ECCCSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred cCcccccccceeEEee---ccccchHHHHHHHHHHHHhcccCceEEEE
Confidence 7532 2445554431 11222345678899999999999988754
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=99.33 E-value=4e-12 Score=109.75 Aligned_cols=105 Identities=13% Similarity=0.179 Sum_probs=82.0
Q ss_pred CCCEEEEECCcccHHHHHHHHcC-CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC--CC-CcccEEEEcc
Q 016351 78 QGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV--LP-EKVDVIISEW 152 (391)
Q Consensus 78 ~~~~VLDlGcGtG~l~~~~a~~g-~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~--~~-~~~D~Ivse~ 152 (391)
++..|||||||+|..+..+|+.. ...++|||++ +++..|.++++..+++| |.++++|+..+. ++ +.+|.|++..
T Consensus 29 ~~PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~l~N-v~~~~~Da~~l~~~~~~~~~d~v~i~f 107 (204)
T d2fcaa1 29 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQN-VKLLNIDADTLTDVFEPGEVKRVYLNF 107 (204)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSS-EEEECCCGGGHHHHCCTTSCCEEEEES
T ss_pred CCceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHhccC-chhcccchhhhhcccCchhhhcccccc
Confidence 34589999999999999888873 4489999999 99999999999999976 999999998763 33 7899888633
Q ss_pred ccccccCcc-----hHHHHHHHHhccccCCeEEEcc
Q 016351 153 MGYFLLRES-----MFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 153 ~~~~~~~e~-----~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
......... ..+.++..+.++|||||.+++.
T Consensus 108 p~P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~ 143 (204)
T d2fcaa1 108 SDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFK 143 (204)
T ss_dssp CCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEE
T ss_pred ccccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEE
Confidence 222221110 1257899999999999998753
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.33 E-value=1.5e-12 Score=114.31 Aligned_cols=99 Identities=25% Similarity=0.281 Sum_probs=77.5
Q ss_pred CCCCCCEEEEECCcccHHHHHHHHc-C-CCeEEEEech-HHHHHHHHHHHHcCCC----CcEEEEEcccccCCCC-Cccc
Q 016351 75 HHFQGKTVLDVGTGSGILAIWSAQA-G-ARKVYAVEAT-KMSDHARTLVKANNLQ----DVVEVIEGSVEDIVLP-EKVD 146 (391)
Q Consensus 75 ~~~~~~~VLDlGcGtG~l~~~~a~~-g-~~~V~avD~s-~~~~~a~~~~~~~~~~----~~v~~i~~d~~~~~~~-~~~D 146 (391)
...++.+|||||||+|.++..+|+. + ..+|+++|.+ ++++.|++++++.++. ++++++.+|......+ .+||
T Consensus 73 ~l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~~~~~~~~~fD 152 (224)
T d1i1na_ 73 QLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYD 152 (224)
T ss_dssp TSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCEE
T ss_pred ccCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeecccccchhhhhh
Confidence 3467899999999999999888886 4 4489999999 9999999999876653 3589999998876544 7899
Q ss_pred EEEEccccccccCcchHHHHHHHHhccccCCeEEEc
Q 016351 147 VIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 147 ~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~ 182 (391)
+|++...... .+ ..+.+.|||||+++.
T Consensus 153 ~I~~~~~~~~-----ip----~~l~~~LkpGG~LV~ 179 (224)
T d1i1na_ 153 AIHVGAAAPV-----VP----QALIDQLKPGGRLIL 179 (224)
T ss_dssp EEEECSBBSS-----CC----HHHHHTEEEEEEEEE
T ss_pred hhhhhcchhh-----cC----HHHHhhcCCCcEEEE
Confidence 9998542211 12 235577999999874
|
| >d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methylase YhhF species: Escherichia coli [TaxId: 562]
Probab=99.32 E-value=1.7e-12 Score=110.44 Aligned_cols=102 Identities=14% Similarity=0.215 Sum_probs=82.8
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC--CCCcccEEEEccc
Q 016351 77 FQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV--LPEKVDVIISEWM 153 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~--~~~~~D~Ivse~~ 153 (391)
.++.+|||++||||.+++.++..|+++|++||.+ .+++.++++++.++..+ ++++.+|+.++. ..++||+|++++.
T Consensus 42 ~~~~~vLDlfaGsG~~giealsrGa~~v~~VE~~~~a~~~~k~N~~~~~~~~-~~ii~~d~~~~l~~~~~~fDlIf~DPP 120 (183)
T d2fpoa1 42 IVDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKAGN-ARVVNSNAMSFLAQKGTPHNIVFVDPP 120 (183)
T ss_dssp HTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCS-EEEECSCHHHHHSSCCCCEEEEEECCS
T ss_pred cchhhhhhhhccccceeeeEEecCcceeEEEEEeechhhHHHHHHhhccccc-eeeeeecccccccccccccCEEEEcCc
Confidence 3678999999999999999999999999999999 99999999999988765 899999987752 2378999999985
Q ss_pred cccccCcchHHHHHHHH--hccccCCeEEEcc
Q 016351 154 GYFLLRESMFDSVICAR--DRWLKPTGVMYPS 183 (391)
Q Consensus 154 ~~~~~~e~~l~~~l~~~--~~~L~~gG~ii~~ 183 (391)
|. ......++..+ ..+|+++|+++..
T Consensus 121 -Y~---~~~~~~~l~~l~~~~~L~~~~iIiiE 148 (183)
T d2fpoa1 121 -FR---RGLLEETINLLEDNGWLADEALIYVE 148 (183)
T ss_dssp -SS---TTTHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred -cc---cchHHHHHHHHHHCCCCCCCeEEEEE
Confidence 22 12334445444 3679999998864
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.30 E-value=4.4e-12 Score=116.92 Aligned_cols=108 Identities=23% Similarity=0.270 Sum_probs=84.3
Q ss_pred HHHHHhcCCCCCCCEEEEECCcccHHHHHHHHc-C-CCeEEEEech-HHHHHHHHHHHHc----------CCCCcEEEEE
Q 016351 67 FNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQA-G-ARKVYAVEAT-KMSDHARTLVKAN----------NLQDVVEVIE 133 (391)
Q Consensus 67 ~~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~-g-~~~V~avD~s-~~~~~a~~~~~~~----------~~~~~v~~i~ 133 (391)
...|...+...++.+|||+|||+|.+++.+|++ | ..+|+++|++ ++++.|+++++.. ++.+++++.+
T Consensus 87 ~~~Il~~l~i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~ 166 (324)
T d2b25a1 87 INMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIH 166 (324)
T ss_dssp HHHHHHHHTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEE
T ss_pred HHHHHHHhCCCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEEe
Confidence 344666667789999999999999999999987 4 3489999999 9999999998863 3456799999
Q ss_pred cccccCCC--C-CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEc
Q 016351 134 GSVEDIVL--P-EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 134 ~d~~~~~~--~-~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~ 182 (391)
+|+.+... + ..||.|+.+... ...++..+.+.|||||+++.
T Consensus 167 ~di~~~~~~~~~~~fD~V~LD~p~--------P~~~l~~~~~~LKpGG~lv~ 210 (324)
T d2b25a1 167 KDISGATEDIKSLTFDAVALDMLN--------PHVTLPVFYPHLKHGGVCAV 210 (324)
T ss_dssp SCTTCCC-------EEEEEECSSS--------TTTTHHHHGGGEEEEEEEEE
T ss_pred cchhhcccccCCCCcceEeecCcC--------HHHHHHHHHHhccCCCEEEE
Confidence 99987632 2 679999976432 12357788999999999874
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.29 E-value=1.5e-11 Score=105.98 Aligned_cols=76 Identities=26% Similarity=0.372 Sum_probs=68.0
Q ss_pred CCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEcc
Q 016351 74 KHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEW 152 (391)
Q Consensus 74 ~~~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~~D~Ivse~ 152 (391)
....++++|||+|||+|.+++.++..|+.+|+|+|++ .+++.|+++++.++.. ++++.+|+..+ +++||+|++++
T Consensus 42 ~~dl~g~~vLDlg~GtG~l~i~a~~~g~~~v~~vdi~~~~~~~a~~N~~~~~~~--~~~~~~d~~~~--~~~fD~Vi~nP 117 (201)
T d1wy7a1 42 LGDIEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKGK--FKVFIGDVSEF--NSRVDIVIMNP 117 (201)
T ss_dssp TTSSTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTTS--EEEEESCGGGC--CCCCSEEEECC
T ss_pred cCCCCCCEEEECcCcchHHHHHHHHcCCCEEEEEcCcHHHHHHHHHHHHHcCCC--ceEEECchhhh--CCcCcEEEEcC
Confidence 4456889999999999999999999998899999999 9999999999988865 89999998876 47899999988
Q ss_pred c
Q 016351 153 M 153 (391)
Q Consensus 153 ~ 153 (391)
.
T Consensus 118 P 118 (201)
T d1wy7a1 118 P 118 (201)
T ss_dssp C
T ss_pred c
Confidence 5
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.29 E-value=3.9e-12 Score=118.16 Aligned_cols=112 Identities=17% Similarity=0.189 Sum_probs=84.7
Q ss_pred HHHHhcCCCCCCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHc-------CCC-CcEEEEEcccc
Q 016351 68 NSIFQNKHHFQGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKAN-------NLQ-DVVEVIEGSVE 137 (391)
Q Consensus 68 ~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~-------~~~-~~v~~i~~d~~ 137 (391)
..+.+.+...++.+|||||||+|.+++.+|+. ++.+++|||++ .+++.|++..+.. |+. .+|+++++|+.
T Consensus 141 ~~~~~~~~l~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~gd~~ 220 (328)
T d1nw3a_ 141 AQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFL 220 (328)
T ss_dssp HHHHHHSCCCTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEECCTT
T ss_pred HHHHHHcCCCCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEECccc
Confidence 34455566678899999999999999988775 67789999999 8999988766542 222 35999999998
Q ss_pred cCCCC---CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 138 DIVLP---EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 138 ~~~~~---~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
+.++. ..+|+|+++.+ ... ..+...+.++.+.|||||++|..
T Consensus 221 ~~~~~~~~~~advi~~~~~---~f~-~~~~~~l~e~~r~LKpGg~iv~~ 265 (328)
T d1nw3a_ 221 SEEWRERIANTSVIFVNNF---AFG-PEVDHQLKERFANMKEGGRIVSS 265 (328)
T ss_dssp SHHHHHHHHHCSEEEECCT---TTC-HHHHHHHHHHHTTCCTTCEEEES
T ss_pred ccccccccCcceEEEEcce---ecc-hHHHHHHHHHHHhCCCCcEEEEe
Confidence 87544 23588887543 222 34667788999999999999854
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=99.29 E-value=3.1e-12 Score=111.86 Aligned_cols=100 Identities=23% Similarity=0.244 Sum_probs=77.1
Q ss_pred HHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-CcccE
Q 016351 70 IFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVDV 147 (391)
Q Consensus 70 i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~-~~~D~ 147 (391)
+.+.+...++.+|||||||+|.++..+++.+. +|+++|.+ .+++.|+++.... ++++++.+|....... ++||.
T Consensus 62 ml~~L~l~~g~~VLdIG~GsGy~ta~La~l~~-~V~aiE~~~~~~~~A~~~~~~~---~nv~~~~~d~~~g~~~~~pfD~ 137 (224)
T d1vbfa_ 62 MLDELDLHKGQKVLEIGTGIGYYTALIAEIVD-KVVSVEINEKMYNYASKLLSYY---NNIKLILGDGTLGYEEEKPYDR 137 (224)
T ss_dssp HHHHTTCCTTCEEEEECCTTSHHHHHHHHHSS-EEEEEESCHHHHHHHHHHHTTC---SSEEEEESCGGGCCGGGCCEEE
T ss_pred HHHHhhhcccceEEEecCCCCHHHHHHHHHhc-ccccccccHHHHHHHHHHHhcc---cccccccCchhhcchhhhhHHH
Confidence 55566778899999999999999999999865 89999999 8999999876643 3599999998764333 78999
Q ss_pred EEEccccccccCcchHHHHHHHHhccccCCeEEEc
Q 016351 148 IISEWMGYFLLRESMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 148 Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~ 182 (391)
|++... .. ..+. .+.+.|+|||+++.
T Consensus 138 Iiv~~a---~~--~ip~----~l~~qLk~GGrLV~ 163 (224)
T d1vbfa_ 138 VVVWAT---AP--TLLC----KPYEQLKEGGIMIL 163 (224)
T ss_dssp EEESSB---BS--SCCH----HHHHTEEEEEEEEE
T ss_pred HHhhcc---hh--hhhH----HHHHhcCCCCEEEE
Confidence 997432 11 1223 33467999999874
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.26 E-value=9.1e-12 Score=106.41 Aligned_cols=71 Identities=31% Similarity=0.366 Sum_probs=62.4
Q ss_pred CCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEccc
Q 016351 75 HHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWM 153 (391)
Q Consensus 75 ~~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~~D~Ivse~~ 153 (391)
...++++|||+|||+|.+++.++..|+++|++||++ .+++.|++++. +++++++|+.++ +++||+|++++.
T Consensus 45 ~dl~Gk~VLDlGcGtG~l~i~a~~~ga~~V~~vDid~~a~~~ar~N~~------~~~~~~~D~~~l--~~~fD~Vi~NPP 116 (197)
T d1ne2a_ 45 GNIGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCG------GVNFMVADVSEI--SGKYDTWIMNPP 116 (197)
T ss_dssp TSSBTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCT------TSEEEECCGGGC--CCCEEEEEECCC
T ss_pred CCCCCCEEEEeCCCCcHHHHHHHHcCCCcccccccCHHHHHHHHHccc------cccEEEEehhhc--CCcceEEEeCcc
Confidence 356889999999999999999999999899999999 88898888753 289999999886 478999999874
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=99.25 E-value=1.2e-11 Score=111.00 Aligned_cols=128 Identities=20% Similarity=0.208 Sum_probs=93.9
Q ss_pred cCChHhHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcc
Q 016351 57 LSDRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGS 135 (391)
Q Consensus 57 l~d~~r~~~~~~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d 135 (391)
|--...++.+.+.+.......+..+|||+|||+|..++.+++....+|+|+|+| .++..|++|++.+++.+++.+..+|
T Consensus 89 lIPRpeTE~lv~~~~~~~~~~~~~~vld~g~GsG~i~~~la~~~~~~v~a~Dis~~Al~~A~~Na~~~~~~~~~~i~~~~ 168 (271)
T d1nv8a_ 89 FVPRPETEELVELALELIRKYGIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGE 168 (271)
T ss_dssp CCCCTTHHHHHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESS
T ss_pred cCchhhhhhhhhhhhhhhccccccEEEEeeeeeehhhhhhhhcccceeeechhhhhHHHHHHHHHHHcCCCceeEEeecc
Confidence 333445666666555443333457899999999999999888876689999999 9999999999999999999999999
Q ss_pred cccCCCC--CcccEEEEcccccccc---------Cc---------chHHHHHHHHhccccCCeEEEcccc
Q 016351 136 VEDIVLP--EKVDVIISEWMGYFLL---------RE---------SMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 136 ~~~~~~~--~~~D~Ivse~~~~~~~---------~e---------~~l~~~l~~~~~~L~~gG~ii~~~~ 185 (391)
..+.... ++||+|||++. |... +| .-+..+.+-+.++|+|||.+++...
T Consensus 169 ~~~~~~~~~~~fDlIVsNPP-YI~~~~~l~~~~~~EP~~AL~gg~dGl~~~r~i~~~~L~~~G~l~~Eig 237 (271)
T d1nv8a_ 169 FLEPFKEKFASIEMILSNPP-YVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEIG 237 (271)
T ss_dssp TTGGGGGGTTTCCEEEECCC-CBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEECC
T ss_pred cccccccccCcccEEEEccc-ccCcccccceeeeeccccccccccchHHHHHHHHHHhcCCCCEEEEEEC
Confidence 8775322 68999999873 2211 11 0123333335688999999887655
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.24 E-value=2.7e-11 Score=104.45 Aligned_cols=105 Identities=11% Similarity=0.163 Sum_probs=81.9
Q ss_pred CCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC--CC-CcccEEEEcc
Q 016351 78 QGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV--LP-EKVDVIISEW 152 (391)
Q Consensus 78 ~~~~VLDlGcGtG~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~--~~-~~~D~Ivse~ 152 (391)
.+..|||||||+|.++..+|+. ....++|||++ .++..|.+++..++++| +.++.+|+.++. ++ ..+|.|++..
T Consensus 31 ~~plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~l~N-i~~~~~da~~l~~~~~~~~~~~i~i~f 109 (204)
T d1yzha1 31 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPN-IKLLWVDGSDLTDYFEDGEIDRLYLNF 109 (204)
T ss_dssp CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSS-EEEEECCSSCGGGTSCTTCCSEEEEES
T ss_pred CCCeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhcccc-ceeeecCHHHHhhhccCCceehhcccc
Confidence 3458999999999999998887 44579999999 89999999999999976 999999988764 33 7899988633
Q ss_pred ccccccCc-----chHHHHHHHHhccccCCeEEEcc
Q 016351 153 MGYFLLRE-----SMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 153 ~~~~~~~e-----~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
.....-.. -.-..++..+.++|+|||.+++.
T Consensus 110 PdPw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~ 145 (204)
T d1yzha1 110 SDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFK 145 (204)
T ss_dssp CCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEE
T ss_pred cccccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEE
Confidence 22211100 01267899999999999998753
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.24 E-value=1.6e-11 Score=111.36 Aligned_cols=102 Identities=17% Similarity=0.099 Sum_probs=72.4
Q ss_pred CCEEEEECCcccHHHHHHHHc------CC-CeEEEEech-HHHHHHHHHHHHcCCCCcE--EEEEcccccC------C-C
Q 016351 79 GKTVLDVGTGSGILAIWSAQA------GA-RKVYAVEAT-KMSDHARTLVKANNLQDVV--EVIEGSVEDI------V-L 141 (391)
Q Consensus 79 ~~~VLDlGcGtG~l~~~~a~~------g~-~~V~avD~s-~~~~~a~~~~~~~~~~~~v--~~i~~d~~~~------~-~ 141 (391)
..+|||||||+|.++..+++. +. .+++|||+| .|++.|+++++....-..+ .+...++.++ . .
T Consensus 41 ~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (280)
T d1jqea_ 41 EIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLEKKE 120 (280)
T ss_dssp EEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHHHHTTSSS
T ss_pred CCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhhhcchhcccCC
Confidence 348999999999988776553 11 158999999 9999999988764332334 4445554432 1 2
Q ss_pred CCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 142 PEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 142 ~~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
+++||+|+|..+ +.+-.++..+++.+.++|+|||.+++.
T Consensus 121 ~~~fD~I~~~~~---l~~~~d~~~~l~~l~~~LkpgG~l~i~ 159 (280)
T d1jqea_ 121 LQKWDFIHMIQM---LYYVKDIPATLKFFHSLLGTNAKMLII 159 (280)
T ss_dssp CCCEEEEEEESC---GGGCSCHHHHHHHHHHTEEEEEEEEEE
T ss_pred CCceeEEEEccc---eecCCCHHHHHHHHHhhCCCCCEEEEE
Confidence 379999998433 333345778999999999999988754
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=99.23 E-value=7.6e-12 Score=108.63 Aligned_cols=104 Identities=25% Similarity=0.319 Sum_probs=81.7
Q ss_pred HHHHhcCCCCCCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-Cc
Q 016351 68 NSIFQNKHHFQGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EK 144 (391)
Q Consensus 68 ~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~-~~ 144 (391)
..+.+.+...++.+|||||||||.++..+++. |. +|+++|.+ .+++.|+++++..++.+ +.++++|..+.... .+
T Consensus 68 a~ml~~L~l~~g~~VLeIGsGsGY~taila~l~g~-~V~~ie~~~~l~~~a~~~l~~~g~~n-v~~~~gd~~~g~~~~~p 145 (215)
T d1jg1a_ 68 AIMLEIANLKPGMNILEVGTGSGWNAALISEIVKT-DVYTIERIPELVEFAKRNLERAGVKN-VHVILGDGSKGFPPKAP 145 (215)
T ss_dssp HHHHHHHTCCTTCCEEEECCTTSHHHHHHHHHHCS-CEEEEESCHHHHHHHHHHHHHTTCCS-EEEEESCGGGCCGGGCC
T ss_pred HHHHHhhccCccceEEEecCCCChhHHHHHHhhCc-eeEEEeccHHHHHHHHHHHHHcCCce-eEEEECccccCCcccCc
Confidence 34555566778899999999999999999986 54 79999999 89999999999999876 99999999885433 89
Q ss_pred ccEEEEccccccccCcchHHHHHHHHhccccCCeEEEc
Q 016351 145 VDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 145 ~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~ 182 (391)
||.|++... .. .....++ ..|+|||+++.
T Consensus 146 fD~Iiv~~a---~~--~ip~~l~----~qL~~gGrLv~ 174 (215)
T d1jg1a_ 146 YDVIIVTAG---AP--KIPEPLI----EQLKIGGKLII 174 (215)
T ss_dssp EEEEEECSB---BS--SCCHHHH----HTEEEEEEEEE
T ss_pred ceeEEeecc---cc--cCCHHHH----HhcCCCCEEEE
Confidence 999998432 11 1233333 45899999873
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.22 E-value=1.1e-11 Score=111.59 Aligned_cols=108 Identities=16% Similarity=0.202 Sum_probs=75.6
Q ss_pred CCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCC----------------------------
Q 016351 76 HFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQ---------------------------- 126 (391)
Q Consensus 76 ~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~---------------------------- 126 (391)
..++.+|||||||+|.+++..+..+..+|+|+|.| .|++.+++.++.....
T Consensus 52 ~~~g~~vLDiGcG~g~~~~~~~~~~~~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (263)
T d2g72a1 52 EVSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLR 131 (263)
T ss_dssp CSCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHH
T ss_pred CCCCcEEEEeccCCCHHHHHHhcccCCeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHHHhh
Confidence 45778999999999998866565555589999999 9999999877543211
Q ss_pred -CcEEEEEcccccCC------C-CCcccEEEEccccccc-cCcchHHHHHHHHhccccCCeEEEcc
Q 016351 127 -DVVEVIEGSVEDIV------L-PEKVDVIISEWMGYFL-LRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 127 -~~v~~i~~d~~~~~------~-~~~~D~Ivse~~~~~~-~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
..-.++..|+..-. . +++||+|++..+.+.. .....+..+++.+.++|||||.+|..
T Consensus 132 ~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPGG~li~~ 197 (263)
T d2g72a1 132 ARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLI 197 (263)
T ss_dssp HHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred hhhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCCCEEEEe
Confidence 01233445554321 1 2579999985443333 23335778899999999999998854
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.21 E-value=2.5e-11 Score=106.29 Aligned_cols=113 Identities=21% Similarity=0.236 Sum_probs=86.1
Q ss_pred HHHHHHHHHhc---CCCCCCCEEEEECCcccHHHHHHHHc-C-CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEccc
Q 016351 63 MDAYFNSIFQN---KHHFQGKTVLDVGTGSGILAIWSAQA-G-ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSV 136 (391)
Q Consensus 63 ~~~~~~~i~~~---~~~~~~~~VLDlGcGtG~l~~~~a~~-g-~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~ 136 (391)
......+|... +...++.+|||+|||+|..+..+|+. | ..+|+|+|++ .|++.++++++..+ .+..+..|.
T Consensus 55 rSKlaa~i~~~l~~l~i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~~---~~~~i~~d~ 131 (227)
T d1g8aa_ 55 RSKLGAAIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERR---NIVPILGDA 131 (227)
T ss_dssp TCHHHHHHHTTCCCCCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCT---TEEEEECCT
T ss_pred ccHHHHHHHccccccccCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhcC---CceEEEEEC
Confidence 34555666543 44668899999999999999999987 4 3589999999 99999998876553 277888887
Q ss_pred ccCC---C-CCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 137 EDIV---L-PEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 137 ~~~~---~-~~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
.... . ...+|+|+++.. .......++..+.+.|||||++++.
T Consensus 132 ~~~~~~~~~~~~vD~i~~d~~-----~~~~~~~~l~~~~~~LkpgG~lvi~ 177 (227)
T d1g8aa_ 132 TKPEEYRALVPKVDVIFEDVA-----QPTQAKILIDNAEVYLKRGGYGMIA 177 (227)
T ss_dssp TCGGGGTTTCCCEEEEEECCC-----STTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCcccccccccceEEEEEEcc-----ccchHHHHHHHHHHhcccCCeEEEE
Confidence 6542 1 267899987542 1234667899999999999998864
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.16 E-value=9e-11 Score=110.84 Aligned_cols=113 Identities=19% Similarity=0.210 Sum_probs=80.0
Q ss_pred HHHHHhcCCCCCCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcC-------CC-CcEEE-EEcc
Q 016351 67 FNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANN-------LQ-DVVEV-IEGS 135 (391)
Q Consensus 67 ~~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~-------~~-~~v~~-i~~d 135 (391)
...|.+.+...++.+|||||||+|.+++.+|+. |.++|+|||++ .+++.|+++++..+ .. ..+.+ +.++
T Consensus 205 i~~Il~~l~Lkpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~~~~ 284 (406)
T d1u2za_ 205 LSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKS 284 (406)
T ss_dssp HHHHHHHTTCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSC
T ss_pred HHHHHHHhCCCCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeeeeec
Confidence 334555566778899999999999999888875 77789999999 99999998887532 11 11333 3444
Q ss_pred cccCCCC----CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 136 VEDIVLP----EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 136 ~~~~~~~----~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
+.+.+.. ..+|+|+++.. . +...+...+.++.+.|||||++|..
T Consensus 285 f~~~~~~d~~~~~adVV~inn~---~-f~~~l~~~L~ei~r~LKPGGrIVs~ 332 (406)
T d1u2za_ 285 FVDNNRVAELIPQCDVILVNNF---L-FDEDLNKKVEKILQTAKVGCKIISL 332 (406)
T ss_dssp STTCHHHHHHGGGCSEEEECCT---T-CCHHHHHHHHHHHTTCCTTCEEEES
T ss_pred hhhccccccccccceEEEEecc---c-CchHHHHHHHHHHHhcCCCcEEEEe
Confidence 4332111 46788887432 2 2235778899999999999998854
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.10 E-value=9.5e-11 Score=101.79 Aligned_cols=104 Identities=16% Similarity=0.358 Sum_probs=81.7
Q ss_pred CCCCEEEEECCcccHHHHHHHHc-C-CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC------C-CCccc
Q 016351 77 FQGKTVLDVGTGSGILAIWSAQA-G-ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV------L-PEKVD 146 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~l~~~~a~~-g-~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~------~-~~~~D 146 (391)
.+.++|||||||+|..++.+|++ + ..+|+++|.+ .+++.|+++++..|+.++|+++.+|..++- . .++||
T Consensus 55 ~kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~~e~l~~l~~~~~~~~~D 134 (214)
T d2cl5a1 55 YSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLD 134 (214)
T ss_dssp HCCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGHHHHSCCCCEE
T ss_pred hCCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCCccceeeeccccccccchhhcccccccc
Confidence 35689999999999999999986 2 3489999999 899999999999999999999999988751 1 25799
Q ss_pred EEEEccccccccCcch-HHHHHHHHhccccCCeEEEcccc
Q 016351 147 VIISEWMGYFLLRESM-FDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 147 ~Ivse~~~~~~~~e~~-l~~~l~~~~~~L~~gG~ii~~~~ 185 (391)
+|+.+.- .+.. ....+....++|+|||+++....
T Consensus 135 ~ifiD~~-----~~~~~~~~~l~~~~~lLkpGGvIv~Ddv 169 (214)
T d2cl5a1 135 MVFLDHW-----KDRYLPDTLLLEKCGLLRKGTVLLADNV 169 (214)
T ss_dssp EEEECSC-----GGGHHHHHHHHHHTTCEEEEEEEEESCC
T ss_pred eeeeccc-----ccccccHHHHHHHhCccCCCcEEEEeCc
Confidence 9997531 1111 12235566789999999887654
|
| >d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase HI0767 species: Haemophilus influenzae [TaxId: 727]
Probab=99.07 E-value=1.7e-10 Score=97.72 Aligned_cols=104 Identities=23% Similarity=0.320 Sum_probs=82.1
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCC-cEEEEEcccccCC---C-CCcccEEEE
Q 016351 77 FQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQD-VVEVIEGSVEDIV---L-PEKVDVIIS 150 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~-~v~~i~~d~~~~~---~-~~~~D~Ivs 150 (391)
..+.+|||+.||||.+++.++..|+++|+.||.+ ..+...+++++..+..+ ...++..|+.+.. . ..+||+|++
T Consensus 42 ~~~~~vLDlFaGsG~~glEalSRGA~~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~~d~~~~l~~~~~~~~fDlIFl 121 (183)
T d2ifta1 42 IHQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFL 121 (183)
T ss_dssp HTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEE
T ss_pred cccceEeecccCccceeeeeeeecceeeEEeecccchhhhHhhHHhhhcccccccccccccccccccccccCCcccEEEe
Confidence 3678999999999999999999999999999999 99999999999988755 5777777765532 1 257999999
Q ss_pred ccccccccCcchHHHHHHHH--hccccCCeEEEccc
Q 016351 151 EWMGYFLLRESMFDSVICAR--DRWLKPTGVMYPSH 184 (391)
Q Consensus 151 e~~~~~~~~e~~l~~~l~~~--~~~L~~gG~ii~~~ 184 (391)
|+.-.. .....++..+ ..+|+++|+++...
T Consensus 122 DPPY~~----~~~~~~l~~l~~~~~L~~~~liiiE~ 153 (183)
T d2ifta1 122 DPPFHF----NLAEQAISLLCENNWLKPNALIYVET 153 (183)
T ss_dssp CCCSSS----CHHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred chhHhh----hhHHHHHHHHHHhCCcCCCcEEEEEe
Confidence 985322 2344455554 36899999998764
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.07 E-value=2.7e-10 Score=99.06 Aligned_cols=106 Identities=18% Similarity=0.168 Sum_probs=86.3
Q ss_pred CCCCEEEEECCcccHHHHHHHHcC--CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC-------CCCccc
Q 016351 77 FQGKTVLDVGTGSGILAIWSAQAG--ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV-------LPEKVD 146 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~l~~~~a~~g--~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~-------~~~~~D 146 (391)
.+.++|||||||+|..++.+|++- ..+|+++|.+ ...+.|+++++..|+.++++++.+|+.+.. ..++||
T Consensus 58 ~~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda~e~l~~~~~~~~~~~fD 137 (219)
T d2avda1 58 IQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFD 137 (219)
T ss_dssp TTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEE
T ss_pred cCCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEEEEeehhhcchhhhhhcccCCcc
Confidence 456899999999999999999862 3489999999 899999999999999999999999986631 236899
Q ss_pred EEEEccccccccCcchHHHHHHHHhccccCCeEEEcccceeE
Q 016351 147 VIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHARMW 188 (391)
Q Consensus 147 ~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~~~~~ 188 (391)
+|+.+.- .......++.+.++|+|||+++.....+.
T Consensus 138 ~ifiD~d------k~~y~~~~~~~~~lL~~GGvii~Dn~l~~ 173 (219)
T d2avda1 138 VAVVDAD------KENCSAYYERCLQLLRPGGILAVLRVLWR 173 (219)
T ss_dssp EEEECSC------STTHHHHHHHHHHHEEEEEEEEEECCSGG
T ss_pred EEEEeCC------HHHHHHHHHHHHHHhcCCcEEEEeCCccc
Confidence 9997531 12345667888899999999987766444
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.07 E-value=6.4e-11 Score=103.44 Aligned_cols=99 Identities=18% Similarity=0.236 Sum_probs=73.0
Q ss_pred CCCCCCEEEEECCcccHHHHHHHHc----CC---CeEEEEech-HHHHHHHHHHHHcCCC----CcEEEEEcccccCCCC
Q 016351 75 HHFQGKTVLDVGTGSGILAIWSAQA----GA---RKVYAVEAT-KMSDHARTLVKANNLQ----DVVEVIEGSVEDIVLP 142 (391)
Q Consensus 75 ~~~~~~~VLDlGcGtG~l~~~~a~~----g~---~~V~avD~s-~~~~~a~~~~~~~~~~----~~v~~i~~d~~~~~~~ 142 (391)
...++.+|||||||||.++..+++. |. .+|+++|.+ ++++.|++++...++. .+|.++++|..+...+
T Consensus 77 ~l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~~~d~~~~~~~ 156 (223)
T d1r18a_ 77 HLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYPP 156 (223)
T ss_dssp TCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCGG
T ss_pred ccCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEEeccccccccc
Confidence 3567899999999999998888775 21 379999999 8999998886554221 2499999999886444
Q ss_pred -CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEc
Q 016351 143 -EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 143 -~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~ 182 (391)
.+||.|++... .. .... .+.+.|+|||+++.
T Consensus 157 ~~~fD~Iiv~~a---~~--~~p~----~l~~~Lk~gG~lV~ 188 (223)
T d1r18a_ 157 NAPYNAIHVGAA---AP--DTPT----ELINQLASGGRLIV 188 (223)
T ss_dssp GCSEEEEEECSC---BS--SCCH----HHHHTEEEEEEEEE
T ss_pred ccceeeEEEEee---ch--hchH----HHHHhcCCCcEEEE
Confidence 78999998442 11 1122 34567999999874
|
| >d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Methyltransferase 10 domain domain: Methyltransferase 10 domain containing protein METT10D species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.01 E-value=1.4e-09 Score=96.44 Aligned_cols=75 Identities=19% Similarity=0.226 Sum_probs=63.3
Q ss_pred CCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC-------CCcccEEE
Q 016351 79 GKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL-------PEKVDVII 149 (391)
Q Consensus 79 ~~~VLDlGcGtG~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~-------~~~~D~Iv 149 (391)
..++||||||+|.+++.+++. ...+|+|+|++ .+++.|+++++.|++.+++.+++.+.....+ .++||+|+
T Consensus 62 ~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~fD~iv 141 (250)
T d2h00a1 62 LRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFCM 141 (250)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEEE
T ss_pred cceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHHHHHHhCCCcceeeeeeccHHhhhhhhhhcccCceeEEE
Confidence 468999999999999888876 33489999999 9999999999999999999999876554321 25799999
Q ss_pred Eccc
Q 016351 150 SEWM 153 (391)
Q Consensus 150 se~~ 153 (391)
|++.
T Consensus 142 sNPP 145 (250)
T d2h00a1 142 CNPP 145 (250)
T ss_dssp ECCC
T ss_pred ecCc
Confidence 9985
|
| >d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Caffeoyl-CoA O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.96 E-value=6.5e-10 Score=97.01 Aligned_cols=105 Identities=14% Similarity=0.144 Sum_probs=86.4
Q ss_pred CCCEEEEECCcccHHHHHHHHc-C-CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC--------CCCccc
Q 016351 78 QGKTVLDVGTGSGILAIWSAQA-G-ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV--------LPEKVD 146 (391)
Q Consensus 78 ~~~~VLDlGcGtG~l~~~~a~~-g-~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~--------~~~~~D 146 (391)
+.++||+||+++|.-++.+|++ + ..+|+.+|.+ ..++.|++++++.|+.++|+++.++..+.- ..++||
T Consensus 59 ~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g~a~~~L~~l~~~~~~~~~fD 138 (227)
T d1susa1 59 NAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSYD 138 (227)
T ss_dssp TCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCGGGTTCBS
T ss_pred CCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccccceeeeehHHHHHHHHHHhccccCCcee
Confidence 5689999999999999999986 2 3489999999 899999999999999999999999987641 135899
Q ss_pred EEEEccccccccCcchHHHHHHHHhccccCCeEEEcccceeE
Q 016351 147 VIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHARMW 188 (391)
Q Consensus 147 ~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~~~~~ 188 (391)
+|+.+.- .......++.+.++|+|||+++.+..-+.
T Consensus 139 ~iFiDa~------k~~y~~~~e~~~~ll~~gGiii~DNvl~~ 174 (227)
T d1susa1 139 FIFVDAD------KDNYLNYHKRLIDLVKVGGVIGYDNTLWN 174 (227)
T ss_dssp EEEECSC------STTHHHHHHHHHHHBCTTCCEEEETTTGG
T ss_pred EEEeccc------hhhhHHHHHHHHhhcCCCcEEEEccCCCC
Confidence 9998641 12355678888899999999998766443
|
| >d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Escherichia coli [TaxId: 562]
Probab=98.91 E-value=4.7e-09 Score=89.93 Aligned_cols=103 Identities=19% Similarity=0.292 Sum_probs=87.6
Q ss_pred CCCCCEEEEECCcccHHHHHHHHcC-CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEccc
Q 016351 76 HFQGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWM 153 (391)
Q Consensus 76 ~~~~~~VLDlGcGtG~l~~~~a~~g-~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~~D~Ivse~~ 153 (391)
..++.+|||+|+|.|.-++.+|-.. ..+|+.+|.+ .-+...++.+...++.+ +++++++++++....+||+|+|..+
T Consensus 63 ~~~~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~~L~L~n-v~v~~~R~E~~~~~~~fD~V~sRA~ 141 (207)
T d1jsxa_ 63 YLQGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLEN-IEPVQSRVEEFPSEPPFDGVISRAF 141 (207)
T ss_dssp GCCSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSS-EEEEECCTTTSCCCSCEEEEECSCS
T ss_pred hhcCCceeeeeccCCceeeehhhhcccceEEEEecchHHHHHHHHHHHHcCCcc-eeeeccchhhhccccccceehhhhh
Confidence 3456799999999999999888763 4589999999 88999999999999976 9999999999865578999999776
Q ss_pred cccccCcchHHHHHHHHhccccCCeEEEcccce
Q 016351 154 GYFLLRESMFDSVICARDRWLKPTGVMYPSHAR 186 (391)
Q Consensus 154 ~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~~~ 186 (391)
. .+..++.-+.++++++|.++...+.
T Consensus 142 ~-------~~~~ll~~~~~~l~~~g~~~~~KG~ 167 (207)
T d1jsxa_ 142 A-------SLNDMVSWCHHLPGEQGRFYALKGQ 167 (207)
T ss_dssp S-------SHHHHHHHHTTSEEEEEEEEEEESS
T ss_pred c-------CHHHHHHHHHHhcCCCcEEEEECCC
Confidence 4 3567888899999999998866553
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.76 E-value=1.5e-08 Score=85.86 Aligned_cols=110 Identities=19% Similarity=0.202 Sum_probs=83.8
Q ss_pred HHhcCCCCCCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC-----CC
Q 016351 70 IFQNKHHFQGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV-----LP 142 (391)
Q Consensus 70 i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~-----~~ 142 (391)
+...+...++..+||++||+|..+..+++. +..+|+|+|.+ .|++.|+++.+..+ +++.++++++.++. ..
T Consensus 15 vi~~l~~~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~~--~r~~~~~~~f~~~~~~~~~~~ 92 (192)
T d1m6ya2 15 VIEFLKPEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFS--DRVSLFKVSYREADFLLKTLG 92 (192)
T ss_dssp HHHHHCCCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGT--TTEEEEECCGGGHHHHHHHTT
T ss_pred HHHhhCCCCCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhcccc--ccccchhHHHhhHHHHHHHcC
Confidence 344445678899999999999999888886 44589999999 99999999887654 56999999987752 22
Q ss_pred -CcccEEEEcccccc---ccC----cchHHHHHHHHhccccCCeEEEc
Q 016351 143 -EKVDVIISEWMGYF---LLR----ESMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 143 -~~~D~Ivse~~~~~---~~~----e~~l~~~l~~~~~~L~~gG~ii~ 182 (391)
+++|.|+.++ |.. +.. -..+...+..+.++|+|||.++.
T Consensus 93 ~~~vdgIl~Dl-GvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~i 139 (192)
T d1m6ya2 93 IEKVDGILMDL-GVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVV 139 (192)
T ss_dssp CSCEEEEEEEC-SCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEE
T ss_pred CCCcceeeecc-chhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeee
Confidence 7899999764 211 111 12356778889999999998874
|
| >d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Bacillus subtilis, Ermc' [TaxId: 1423]
Probab=98.75 E-value=5.3e-08 Score=85.14 Aligned_cols=84 Identities=17% Similarity=0.272 Sum_probs=67.2
Q ss_pred HHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-C
Q 016351 66 YFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-E 143 (391)
Q Consensus 66 ~~~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~-~ 143 (391)
..+.|.+.+...++++|||||||+|.++..+++.+. +|+|||++ .+++.++++.... ++++++++|+.+++++ .
T Consensus 9 i~~~iv~~~~~~~~d~VlEIGpG~G~LT~~Ll~~~~-~v~avE~D~~l~~~l~~~~~~~---~n~~i~~~D~l~~~~~~~ 84 (235)
T d1qama_ 9 NIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRCN-FVTAIEIDHKLCKTTENKLVDH---DNFQVLNKDILQFKFPKN 84 (235)
T ss_dssp HHHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHHSS-EEEEECSCHHHHHHHHHHTTTC---CSEEEECCCGGGCCCCSS
T ss_pred HHHHHHHhcCCCCCCeEEEECCCchHHHHHHHhCcC-ceEEEeeccchHHHHHHHhhcc---cchhhhhhhhhhcccccc
Confidence 345566667677889999999999999999999876 89999999 8888888766443 3599999999998876 3
Q ss_pred cccEEEEccc
Q 016351 144 KVDVIISEWM 153 (391)
Q Consensus 144 ~~D~Ivse~~ 153 (391)
....|++++.
T Consensus 85 ~~~~vv~NLP 94 (235)
T d1qama_ 85 QSYKIFGNIP 94 (235)
T ss_dssp CCCEEEEECC
T ss_pred ccceeeeeeh
Confidence 3445677653
|
| >d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: (Uracil-5-)-methyltransferase domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=98.74 E-value=2.4e-08 Score=93.29 Aligned_cols=92 Identities=18% Similarity=0.160 Sum_probs=75.6
Q ss_pred HHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC
Q 016351 63 MDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL 141 (391)
Q Consensus 63 ~~~~~~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~ 141 (391)
.+.+.+.+.+.+...++.+|||+.||+|.+++.+|+.+. +|+|||.+ .+++.|+++++.|++.+ ++++.++..+...
T Consensus 197 ~e~l~~~v~~~~~~~~~~~vlDLycG~G~fsl~La~~~~-~V~gvE~~~~ai~~A~~na~~n~i~n-~~~~~~~~~~~~~ 274 (358)
T d1uwva2 197 NQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAA-SVVGVEGVPALVEKGQQNARLNGLQN-VTFYHENLEEDVT 274 (358)
T ss_dssp HHHHHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTTSS-EEEEEESCHHHHHHHHHHHHHTTCCS-EEEEECCTTSCCS
T ss_pred hhHHHHHHHHhhccCCCceEEEecccccccchhcccccc-EEEeccCcHHHHHHHHHhHHhccccc-ceeeecchhhhhh
Confidence 455555566665566778999999999999999998755 89999999 99999999999999987 9999999877421
Q ss_pred -----CCcccEEEEcccccc
Q 016351 142 -----PEKVDVIISEWMGYF 156 (391)
Q Consensus 142 -----~~~~D~Ivse~~~~~ 156 (391)
..++|+||.++.-..
T Consensus 275 ~~~~~~~~~d~vilDPPR~G 294 (358)
T d1uwva2 275 KQPWAKNGFDKVLLDPARAG 294 (358)
T ss_dssp SSGGGTTCCSEEEECCCTTC
T ss_pred hhhhhhccCceEEeCCCCcc
Confidence 256899999886544
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=98.70 E-value=2.1e-08 Score=91.50 Aligned_cols=111 Identities=17% Similarity=0.099 Sum_probs=83.7
Q ss_pred CCCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHc--C--CCCcEEEEEcccccC--CCCCcccEE
Q 016351 77 FQGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKAN--N--LQDVVEVIEGSVEDI--VLPEKVDVI 148 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~--~--~~~~v~~i~~d~~~~--~~~~~~D~I 148 (391)
...++||.||.|.|..+..+++. +..+|++||++ .+++.|++.+... + -..+++++.+|..+. ..+++||+|
T Consensus 76 ~~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvI 155 (312)
T d1uira_ 76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVV 155 (312)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEE
T ss_pred CCcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhcCCcccEE
Confidence 34589999999999999988887 45689999999 8999999887432 1 135799999999885 234789999
Q ss_pred EEccccccccCc----chHHHHHHHHhccccCCeEEEccccee
Q 016351 149 ISEWMGYFLLRE----SMFDSVICARDRWLKPTGVMYPSHARM 187 (391)
Q Consensus 149 vse~~~~~~~~e----~~l~~~l~~~~~~L~~gG~ii~~~~~~ 187 (391)
+++......... -.-..+++.+++.|+|||+++......
T Consensus 156 i~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~~~s~ 198 (312)
T d1uira_ 156 IIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTGMI 198 (312)
T ss_dssp EEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEEEE
T ss_pred EEeCCCcccccchhhhhhhHHHHHHHHHhcCCCceEEEecCCc
Confidence 998754322111 112568899999999999998654433
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.70 E-value=6.2e-09 Score=93.56 Aligned_cols=108 Identities=18% Similarity=0.131 Sum_probs=81.6
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHc---------CCCCcEEEEEcccccCC-CCCcc
Q 016351 77 FQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKAN---------NLQDVVEVIEGSVEDIV-LPEKV 145 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~---------~~~~~v~~i~~d~~~~~-~~~~~ 145 (391)
.+.++||.||+|.|..+..+++.+..+|++||++ .+++.|++.+..+ .-..+++++.+|...+- -.++|
T Consensus 71 ~~p~~vLiiG~G~G~~~~~~l~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~y 150 (276)
T d1mjfa_ 71 PKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRGF 150 (276)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCCE
T ss_pred CCCceEEEecCCchHHHHHHHHhCCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhccCCC
Confidence 4568999999999999988888877799999999 8999998866432 22457999999987652 23789
Q ss_pred cEEEEccccccccCcc-hHHHHHHHHhccccCCeEEEccc
Q 016351 146 DVIISEWMGYFLLRES-MFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 146 D~Ivse~~~~~~~~e~-~l~~~l~~~~~~L~~gG~ii~~~ 184 (391)
|+|++++......... .-..+++.+++.|+|+|+++...
T Consensus 151 DvIi~D~~~~~~~~~~L~t~eF~~~~~~~L~~~Gv~v~q~ 190 (276)
T d1mjfa_ 151 DVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQA 190 (276)
T ss_dssp EEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred CEEEEeCCCCCCCcccccCHHHHHhhHhhcCCCceEEEec
Confidence 9999987643221111 12568899999999999988553
|
| >d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Chemotaxis receptor methyltransferase CheR, C-terminal domain domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=98.67 E-value=1e-07 Score=80.87 Aligned_cols=108 Identities=19% Similarity=0.267 Sum_probs=70.6
Q ss_pred CCCCEEEEECCcccH----HHHHHHHcCC-----CeEEEEech-HHHHHHHHHH--------------H----HcCC---
Q 016351 77 FQGKTVLDVGTGSGI----LAIWSAQAGA-----RKVYAVEAT-KMSDHARTLV--------------K----ANNL--- 125 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~----l~~~~a~~g~-----~~V~avD~s-~~~~~a~~~~--------------~----~~~~--- 125 (391)
.+..+||++|||||- +++.+..... -+|+|+|++ .+++.|++-. . ..+.
T Consensus 23 ~~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~~~ 102 (193)
T d1af7a2 23 HGEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHE 102 (193)
T ss_dssp CSCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSC
T ss_pred CCCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecCCCcc
Confidence 345789999999995 5555555411 169999999 8888887321 1 1110
Q ss_pred ---------CCcEEEEEcccccCCC--CCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcccc
Q 016351 126 ---------QDVVEVIEGSVEDIVL--PEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 126 ---------~~~v~~i~~d~~~~~~--~~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~~ 185 (391)
...+.+...+...... .++||+|+|..+...+. ......+++.+.+.|+|||+++....
T Consensus 103 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~fDvI~CRNVLiYf~-~~~~~~vl~~l~~~L~pGG~L~lG~s 172 (193)
T d1af7a2 103 GLVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFD-KTTQEDILRRFVPLLKPDGLLFAGHS 172 (193)
T ss_dssp SEEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSC-HHHHHHHHHHHGGGEEEEEEEEECTT
T ss_pred ceeehHHHHHHHHHHhhhhccccccCCCCCccEEEeehhHHhcC-HHHHHHHHHHHHHHhCCCcEEEEecC
Confidence 0124555555544332 27899999954433333 33567899999999999999886644
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Probab=98.64 E-value=2.5e-08 Score=89.96 Aligned_cols=108 Identities=20% Similarity=0.181 Sum_probs=80.9
Q ss_pred CCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcC--C-CCcEEEEEcccccCC--CCCcccEEEE
Q 016351 78 QGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANN--L-QDVVEVIEGSVEDIV--LPEKVDVIIS 150 (391)
Q Consensus 78 ~~~~VLDlGcGtG~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~--~-~~~v~~i~~d~~~~~--~~~~~D~Ivs 150 (391)
..++||-||.|.|..+..+++. +..+|++||++ .+++.|++.+..+. + ..+++++.+|....- .+++||+|++
T Consensus 89 ~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi~ 168 (295)
T d1inla_ 89 NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVIII 168 (295)
T ss_dssp SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEEE
T ss_pred CCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhcCCCCCCEEEE
Confidence 4589999999999999999887 45689999999 89999998765432 2 357999999998853 2378999999
Q ss_pred ccccccccC--cchHHHHHHHHhccccCCeEEEcccc
Q 016351 151 EWMGYFLLR--ESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 151 e~~~~~~~~--e~~l~~~l~~~~~~L~~gG~ii~~~~ 185 (391)
+........ .-.-..+++.+++.|+|||+++....
T Consensus 169 D~~dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v~q~~ 205 (295)
T d1inla_ 169 DSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETE 205 (295)
T ss_dssp EC----------CCSHHHHHHHHHHEEEEEEEEEECC
T ss_pred cCCCCCcCchhhhccHHHHHHHHhhcCCCcEEEEecC
Confidence 875432111 11135788999999999999986543
|
| >d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Bacillus subtilis [TaxId: 1423]
Probab=98.63 E-value=6.9e-08 Score=84.14 Aligned_cols=103 Identities=18% Similarity=0.163 Sum_probs=85.5
Q ss_pred CCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC----CCcccEEEEc
Q 016351 78 QGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL----PEKVDVIISE 151 (391)
Q Consensus 78 ~~~~VLDlGcGtG~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~----~~~~D~Ivse 151 (391)
...+|+|||+|.|.-++.+|-. ...+|+.+|.+ .-+...+..++..++.+ +.+++..++++.. .++||+|+|.
T Consensus 70 ~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~FL~~v~~~L~L~n-~~i~~~R~E~~~~~~~~~~~~D~v~sR 148 (239)
T d1xdza_ 70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLEN-TTFCHDRAETFGQRKDVRESYDIVTAR 148 (239)
T ss_dssp GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSS-EEEEESCHHHHTTCTTTTTCEEEEEEE
T ss_pred CCCeEEeecCCCchHHHHHHHhCCCccceeecchHHHHHHHHHHHHHhCCCC-cEEEeehhhhccccccccccceEEEEh
Confidence 4579999999999999888864 55689999999 88999999999999976 8999999987632 3689999998
Q ss_pred cccccccCcchHHHHHHHHhccccCCeEEEcccceeE
Q 016351 152 WMGYFLLRESMFDSVICARDRWLKPTGVMYPSHARMW 188 (391)
Q Consensus 152 ~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~~~~~ 188 (391)
.+. .+..++.-...+++++|.++...+..+
T Consensus 149 Ava-------~l~~ll~~~~~~l~~~g~~i~~KG~~~ 178 (239)
T d1xdza_ 149 AVA-------RLSVLSELCLPLVKKNGLFVALKAASA 178 (239)
T ss_dssp CCS-------CHHHHHHHHGGGEEEEEEEEEEECC-C
T ss_pred hhh-------CHHHHHHHHhhhcccCCEEEEECCCCh
Confidence 764 467788999999999999987655433
|
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.62 E-value=1.3e-07 Score=83.08 Aligned_cols=107 Identities=17% Similarity=0.115 Sum_probs=78.2
Q ss_pred HHHhcCCCC-CCCEEEEECCcccHHHHHHHHcC-CCeEEEEechHHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCccc
Q 016351 69 SIFQNKHHF-QGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVD 146 (391)
Q Consensus 69 ~i~~~~~~~-~~~~VLDlGcGtG~l~~~~a~~g-~~~V~avD~s~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~~D 146 (391)
.+.+..... ...+|||||||+|.++..++++. .-+++..|....+ +..+..++|+++.+|+.+- .| ..|
T Consensus 71 ~l~~~~~~f~~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi-------~~~~~~~ri~~~~gd~~~~-~p-~~D 141 (244)
T d1fp1d2 71 RMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVI-------ENAPPLSGIEHVGGDMFAS-VP-QGD 141 (244)
T ss_dssp HHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHH-------TTCCCCTTEEEEECCTTTC-CC-CEE
T ss_pred HHHHhcccccCCcEEEEecCCCcHHHHHHHHHCCCCeEEEecchhhh-------hccCCCCCeEEecCCcccc-cc-cce
Confidence 344445433 34899999999999999998873 3378889987543 3344557899999998763 34 459
Q ss_pred EEEEccccccccCcchHHHHHHHHhccccCCeEEEcccc
Q 016351 147 VIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 147 ~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~~ 185 (391)
+++...+.+.+..+ ....+|+.+++.|+|||.+++...
T Consensus 142 ~~~l~~vLh~~~de-~~~~iL~~~~~aL~pgg~llI~e~ 179 (244)
T d1fp1d2 142 AMILKAVCHNWSDE-KCIEFLSNCHKALSPNGKVIIVEF 179 (244)
T ss_dssp EEEEESSGGGSCHH-HHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EEEEehhhhhCCHH-HHHHHHHHHHHHcCCCcEEEEEEE
Confidence 99876555555444 355789999999999999887654
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.55 E-value=1.1e-07 Score=85.46 Aligned_cols=108 Identities=18% Similarity=0.147 Sum_probs=80.4
Q ss_pred CCCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHc--CC-CCcEEEEEcccccCC--CCCcccEEE
Q 016351 77 FQGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKAN--NL-QDVVEVIEGSVEDIV--LPEKVDVII 149 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~--~~-~~~v~~i~~d~~~~~--~~~~~D~Iv 149 (391)
...++||-||.|.|..+..+.+. +..+|+.||++ .+++.|++.+..+ .+ ..+++++.+|....- ..++||+|+
T Consensus 77 ~~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvIi 156 (285)
T d2o07a1 77 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVII 156 (285)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEE
T ss_pred cCcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhcCCCCCCEEE
Confidence 35589999999999999999987 56799999999 8999999876532 12 357999999988752 347899999
Q ss_pred EccccccccCcc-hHHHHHHHHhccccCCeEEEccc
Q 016351 150 SEWMGYFLLRES-MFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 150 se~~~~~~~~e~-~l~~~l~~~~~~L~~gG~ii~~~ 184 (391)
++.......... .-..+++.+++.|+|||+++...
T Consensus 157 ~D~~~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~ 192 (285)
T d2o07a1 157 TDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQG 192 (285)
T ss_dssp EECC-----------CHHHHHHHHHEEEEEEEEEEE
T ss_pred EcCCCCCCcccccccHHHHHHHHHhcCCCCeEEEec
Confidence 987543221111 12357888999999999998653
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.53 E-value=2.6e-07 Score=83.15 Aligned_cols=109 Identities=17% Similarity=0.168 Sum_probs=83.3
Q ss_pred CCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcC---CCCcEEEEEcccccCC--CC-CcccEEE
Q 016351 78 QGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANN---LQDVVEVIEGSVEDIV--LP-EKVDVII 149 (391)
Q Consensus 78 ~~~~VLDlGcGtG~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~---~~~~v~~i~~d~~~~~--~~-~~~D~Iv 149 (391)
+.++||-||.|.|..+..+.+. +..+|+.||++ .+++.+++....+. -..+++++.+|....- .+ ++||+|+
T Consensus 80 ~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~~~~~yDvIi 159 (290)
T d1xj5a_ 80 NPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAVI 159 (290)
T ss_dssp CCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEEE
T ss_pred CCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhccccCccEEE
Confidence 4589999999999999999987 55689999999 89999998764321 2457999999987742 33 5899999
Q ss_pred EccccccccCcc-hHHHHHHHHhccccCCeEEEcccce
Q 016351 150 SEWMGYFLLRES-MFDSVICARDRWLKPTGVMYPSHAR 186 (391)
Q Consensus 150 se~~~~~~~~e~-~l~~~l~~~~~~L~~gG~ii~~~~~ 186 (391)
.+.......... .-..+++.+++.|+|||+++.....
T Consensus 160 ~D~~dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s 197 (290)
T d1xj5a_ 160 VDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQAES 197 (290)
T ss_dssp ECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEECCC
T ss_pred EcCCCCCCcchhhCCHHHHHHHHHhcCCCcEEEEecCC
Confidence 977543222111 1356889999999999999976543
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Probab=98.53 E-value=2.5e-07 Score=82.62 Aligned_cols=109 Identities=17% Similarity=0.114 Sum_probs=83.5
Q ss_pred CCCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHc--CC-CCcEEEEEcccccC--CCCCcccEEE
Q 016351 77 FQGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKAN--NL-QDVVEVIEGSVEDI--VLPEKVDVII 149 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~--~~-~~~v~~i~~d~~~~--~~~~~~D~Iv 149 (391)
.+.++||-||.|.|..+..+.+. +..+|+.||++ .+++.|++....+ .+ ..+++++.+|.... ...++||+|+
T Consensus 74 ~~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~~~~yDvIi 153 (274)
T d1iy9a_ 74 PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIM 153 (274)
T ss_dssp SSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEE
T ss_pred CCcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHhhcCCCCCEEE
Confidence 34589999999999999999987 66799999999 8999999877542 12 34799999998774 2347899999
Q ss_pred EccccccccCcc-hHHHHHHHHhccccCCeEEEcccc
Q 016351 150 SEWMGYFLLRES-MFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 150 se~~~~~~~~e~-~l~~~l~~~~~~L~~gG~ii~~~~ 185 (391)
.+.......... .-..+++.+++.|+|+|+++....
T Consensus 154 ~D~~~p~~~~~~L~t~eFy~~~~~~L~~~Gv~v~q~~ 190 (274)
T d1iy9a_ 154 VDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTD 190 (274)
T ss_dssp ESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECC
T ss_pred EcCCCCCCcchhhccHHHHHHHHhhcCCCceEEEecC
Confidence 987543222111 135688899999999999986543
|
| >d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Probable dimethyladenosine transferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.51 E-value=2.6e-07 Score=82.44 Aligned_cols=85 Identities=24% Similarity=0.330 Sum_probs=70.4
Q ss_pred HHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcc
Q 016351 67 FNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKV 145 (391)
Q Consensus 67 ~~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~~ 145 (391)
.+.|.......++.+|||||+|+|.++..+++.+. +|++||++ .++...++.+......++++++.+|+....++ ..
T Consensus 10 ~~kIv~~~~~~~~d~VlEIGPG~G~LT~~Ll~~~~-~v~aiE~D~~l~~~L~~~~~~~~~~~~~~~i~~D~l~~~~~-~~ 87 (278)
T d1zq9a1 10 INSIIDKAALRPTDVVLEVGPGTGNMTVKLLEKAK-KVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLP-FF 87 (278)
T ss_dssp HHHHHHHTCCCTTCEEEEECCTTSTTHHHHHHHSS-EEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCCC-CC
T ss_pred HHHHHHHhCCCCCCEEEEECCCchHHHHHHHhcCC-cEEEEEEccchhHHHHHHHhhhccccchhhhHHHHhhhhhh-hh
Confidence 34455555566789999999999999999999976 89999999 89999998887776666799999999998765 45
Q ss_pred cEEEEccc
Q 016351 146 DVIISEWM 153 (391)
Q Consensus 146 D~Ivse~~ 153 (391)
+.||+++.
T Consensus 88 ~~vV~NLP 95 (278)
T d1zq9a1 88 DTCVANLP 95 (278)
T ss_dssp SEEEEECC
T ss_pred hhhhcchH
Confidence 67888764
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=98.49 E-value=9.7e-08 Score=86.41 Aligned_cols=109 Identities=20% Similarity=0.180 Sum_probs=79.6
Q ss_pred CCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcC--C-CCcEEEEEcccccCC--CCCcccEEEE
Q 016351 78 QGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANN--L-QDVVEVIEGSVEDIV--LPEKVDVIIS 150 (391)
Q Consensus 78 ~~~~VLDlGcGtG~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~--~-~~~v~~i~~d~~~~~--~~~~~D~Ivs 150 (391)
..++||-||.|.|..+..+++. +..+|+.||++ .+++.|++.+..+. + ..+++++.+|....- ..++||+|++
T Consensus 106 ~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~~~~~yDvII~ 185 (312)
T d2b2ca1 106 DPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVIIT 185 (312)
T ss_dssp SCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEEE
T ss_pred CCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHhCCCCCCEEEE
Confidence 4589999999999999999987 45689999999 89999998765432 1 257999999988752 2478999999
Q ss_pred ccccccccCcc-hHHHHHHHHhccccCCeEEEcccce
Q 016351 151 EWMGYFLLRES-MFDSVICARDRWLKPTGVMYPSHAR 186 (391)
Q Consensus 151 e~~~~~~~~e~-~l~~~l~~~~~~L~~gG~ii~~~~~ 186 (391)
+.......... .-..+++.+++.|+|||+++.....
T Consensus 186 D~~dp~~~~~~L~t~eFy~~~~~~L~~~Gi~v~q~~s 222 (312)
T d2b2ca1 186 DSSDPVGPAESLFGQSYYELLRDALKEDGILSSQGES 222 (312)
T ss_dssp CCC-------------HHHHHHHHEEEEEEEEEECCC
T ss_pred cCCCCCCcchhhhhHHHHHHHHhhcCCCcEEEEecCC
Confidence 87543222111 1356788999999999999866443
|
| >d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Streptococcus pneumoniae, Ermam [TaxId: 1313]
Probab=98.48 E-value=1.3e-08 Score=89.50 Aligned_cols=82 Identities=21% Similarity=0.290 Sum_probs=65.1
Q ss_pred HHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-Ccc
Q 016351 68 NSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKV 145 (391)
Q Consensus 68 ~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~-~~~ 145 (391)
+.|.+.+...++.+|||||||+|.++..+++.+. +|+|||++ .+++.++++... ..+++++++|+.+++++ ...
T Consensus 19 ~kIv~~~~~~~~d~VLEIGpG~G~LT~~L~~~~~-~v~aIE~D~~l~~~l~~~~~~---~~n~~ii~~D~l~~~~~~~~~ 94 (245)
T d1yuba_ 19 NQIIKQLNLKETDTVYEIGTGKGHLTTKLAKISK-QVTSIELDSHLFNLSSEKLKL---NTRVTLIHQDILQFQFPNKQR 94 (245)
T ss_dssp HHHHHHCCCCSSEEEEECSCCCSSCSHHHHHHSS-EEEESSSSCSSSSSSSCTTTT---CSEEEECCSCCTTTTCCCSSE
T ss_pred HHHHHhcCCCCCCeEEEECCCccHHHHHHHhhcC-ceeEeeecccchhhhhhhhhh---ccchhhhhhhhhcccccccee
Confidence 3455556666789999999999999999999876 89999999 888777655432 24599999999999887 566
Q ss_pred cEEEEccc
Q 016351 146 DVIISEWM 153 (391)
Q Consensus 146 D~Ivse~~ 153 (391)
+.|++++.
T Consensus 95 ~~vv~NLP 102 (245)
T d1yuba_ 95 YKIVGNIP 102 (245)
T ss_dssp EEEEEECC
T ss_pred eeEeeeee
Confidence 67777763
|
| >d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Hypothetical protein Lmo1582 species: Listeria monocytogenes [TaxId: 1639]
Probab=98.47 E-value=1.9e-07 Score=85.94 Aligned_cols=110 Identities=16% Similarity=0.151 Sum_probs=78.4
Q ss_pred HHhcCCCCCCCEEEEECCcccHHHHHHHHc----C--CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC
Q 016351 70 IFQNKHHFQGKTVLDVGTGSGILAIWSAQA----G--ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP 142 (391)
Q Consensus 70 i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~----g--~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~ 142 (391)
+.......++.+|||.+||+|.+.+.+.+. + ..+++|+|++ .++..|+.++..++.. ..+.++|.......
T Consensus 109 ~~~~~~~~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~~--~~~~~~d~~~~~~~ 186 (328)
T d2f8la1 109 LEKVIQKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQK--MTLLHQDGLANLLV 186 (328)
T ss_dssp HHHHHTTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCC--CEEEESCTTSCCCC
T ss_pred HHHHhCCCCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhhh--hhhhcccccccccc
Confidence 333334456678999999999998877643 1 2269999999 8899999888877765 67888887665555
Q ss_pred CcccEEEEccccccccC--------------c-chHHHHHHHHhccccCCeEEE
Q 016351 143 EKVDVIISEWMGYFLLR--------------E-SMFDSVICARDRWLKPTGVMY 181 (391)
Q Consensus 143 ~~~D~Ivse~~~~~~~~--------------e-~~l~~~l~~~~~~L~~gG~ii 181 (391)
.+||+|++++.-..... . .....++..+.++|+|||+++
T Consensus 187 ~~fD~vi~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~ 240 (328)
T d2f8la1 187 DPVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLF 240 (328)
T ss_dssp CCEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEE
T ss_pred ccccccccCCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceE
Confidence 89999999875211110 0 112345777789999999865
|
| >d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TRM1-like domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=98.39 E-value=3e-07 Score=85.68 Aligned_cols=99 Identities=17% Similarity=0.118 Sum_probs=79.5
Q ss_pred CCCEEEEECCcccHHHHHHHH-cCCCeEEEEech-HHHHHHHHHHHHcCCCC--------------cEEEEEcccccCC-
Q 016351 78 QGKTVLDVGTGSGILAIWSAQ-AGARKVYAVEAT-KMSDHARTLVKANNLQD--------------VVEVIEGSVEDIV- 140 (391)
Q Consensus 78 ~~~~VLDlGcGtG~l~~~~a~-~g~~~V~avD~s-~~~~~a~~~~~~~~~~~--------------~v~~i~~d~~~~~- 140 (391)
++.+|||..||||..++..++ .|+.+|+++|+| ..++.++++++.|+..+ .+.+.+.|...+.
T Consensus 45 ~~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~~ 124 (375)
T d2dula1 45 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA 124 (375)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred CCCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhhhH
Confidence 568999999999999996655 588899999999 89999999999998754 3667777765542
Q ss_pred -CCCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 141 -LPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 141 -~~~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
..+.||+|..|+++. ...+++++.+.++.||++...
T Consensus 125 ~~~~~fDvIDiDPfGs-------~~pfldsAi~a~~~~Gll~vT 161 (375)
T d2dula1 125 ERHRYFHFIDLDPFGS-------PMEFLDTALRSAKRRGILGVT 161 (375)
T ss_dssp HSTTCEEEEEECCSSC-------CHHHHHHHHHHEEEEEEEEEE
T ss_pred hhcCcCCcccCCCCCC-------cHHHHHHHHHHhccCCEEEEE
Confidence 236799999988543 235788888889999988755
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.33 E-value=7.6e-07 Score=78.12 Aligned_cols=96 Identities=10% Similarity=0.121 Sum_probs=72.8
Q ss_pred CCEEEEECCcccHHHHHHHHc-CCCeEEEEechHHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEccccccc
Q 016351 79 GKTVLDVGTGSGILAIWSAQA-GARKVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMGYFL 157 (391)
Q Consensus 79 ~~~VLDlGcGtG~l~~~~a~~-g~~~V~avD~s~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~~D~Ivse~~~~~~ 157 (391)
..+|||||||+|.++..++++ ..-+++..|..+.++ ..+..++|+++.+|+.+- . ..+|+++...+.+.+
T Consensus 81 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~-------~~~~~~rv~~~~gD~f~~-~-p~aD~~~l~~vLHdw 151 (244)
T d1fp2a2 81 LESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVE-------NLSGSNNLTYVGGDMFTS-I-PNADAVLLKYILHNW 151 (244)
T ss_dssp CSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHT-------TCCCBTTEEEEECCTTTC-C-CCCSEEEEESCGGGS
T ss_pred ceEEEEecCCccHHHHHHHHhCCCCeEEEecCHHHHH-------hCcccCceEEEecCcccC-C-CCCcEEEEEeecccC
Confidence 378999999999999998887 334899999875443 345567899999999763 2 368999986655555
Q ss_pred cCcchHHHHHHHHhccccCC---eEEEccc
Q 016351 158 LRESMFDSVICARDRWLKPT---GVMYPSH 184 (391)
Q Consensus 158 ~~e~~l~~~l~~~~~~L~~g---G~ii~~~ 184 (391)
..+ ....+|+.+++.|+|| |++++..
T Consensus 152 ~d~-~~~~iL~~~~~al~pgg~~~~lli~e 180 (244)
T d1fp2a2 152 TDK-DCLRILKKCKEAVTNDGKRGKVTIID 180 (244)
T ss_dssp CHH-HHHHHHHHHHHHHSGGGCCCEEEEEE
T ss_pred ChH-HHHHHHHHHHHHcCcccCCcEEEEEE
Confidence 544 3457899999999998 6666543
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.27 E-value=2.4e-06 Score=74.83 Aligned_cols=107 Identities=18% Similarity=0.186 Sum_probs=74.4
Q ss_pred HHHhcCCCCC-CCEEEEECCcccHHHHHHHHcC-CCeEEEEechHHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCccc
Q 016351 69 SIFQNKHHFQ-GKTVLDVGTGSGILAIWSAQAG-ARKVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVD 146 (391)
Q Consensus 69 ~i~~~~~~~~-~~~VLDlGcGtG~l~~~~a~~g-~~~V~avD~s~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~~D 146 (391)
.+.......+ ..+|||||||+|.+++.++++. .-+++..|....++ .....++++++.+|+.+- .| ..|
T Consensus 71 ~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~-------~~~~~~r~~~~~~d~~~~-~P-~ad 141 (243)
T d1kyza2 71 KILETYTGFEGLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHVIE-------DAPSYPGVEHVGGDMFVS-IP-KAD 141 (243)
T ss_dssp HHHHHCCTTSSCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTTTTT-------TCCCCTTEEEEECCTTTC-CC-CCS
T ss_pred HHHHhcccccCCcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHHhhh-------hcccCCceEEeccccccc-CC-Ccc
Confidence 3444444334 4789999999999999999873 34899999985432 233446799999999763 34 356
Q ss_pred EEEEccccccccCcchHHHHHHHHhccccCCeEEEcccc
Q 016351 147 VIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 147 ~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~~ 185 (391)
+++...+.+.+..+ ....+++++++.|+|||.+++...
T Consensus 142 ~~~l~~vlh~~~d~-~~~~iL~~~~~al~pgg~~li~d~ 179 (243)
T d1kyza2 142 AVFMKWICHDWSDE-HCLKFLKNCYEALPDNGKVIVAEC 179 (243)
T ss_dssp CEECSSSSTTSCHH-HHHHHHHHHHHHCCSSSCEEEEEC
T ss_pred eEEEEEEeecCCHH-HHHHHHHHHHHhcCCCceEEEEEE
Confidence 66553343444333 456789999999999998886544
|
| >d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: DNA methylase TaqI, N-terminal domain domain: DNA methylase TaqI, N-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=98.24 E-value=1.4e-06 Score=74.80 Aligned_cols=106 Identities=21% Similarity=0.133 Sum_probs=72.3
Q ss_pred HHHHHhcCCCCCCCEEEEECCcccHHHHHHHHc--CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCC
Q 016351 67 FNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQA--GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPE 143 (391)
Q Consensus 67 ~~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~--g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~ 143 (391)
.+.+...+...++.+|||.|||+|.+...+.+. ...+++|+|++ ..+. +..+..++++|........
T Consensus 8 ~~~m~~l~~~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~----------~~~~~~~~~~~~~~~~~~~ 77 (223)
T d2ih2a1 8 VDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALD----------LPPWAEGILADFLLWEPGE 77 (223)
T ss_dssp HHHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCC----------CCTTEEEEESCGGGCCCSS
T ss_pred HHHHHHhcCCCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHh----------hcccceeeeeehhcccccc
Confidence 344555555667899999999999988777654 34479999999 4332 2233688899988876668
Q ss_pred cccEEEEccccccccC--------------------------cchHHHHHHHHhccccCCeEEEc
Q 016351 144 KVDVIISEWMGYFLLR--------------------------ESMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 144 ~~D~Ivse~~~~~~~~--------------------------e~~l~~~l~~~~~~L~~gG~ii~ 182 (391)
+||+|++++....... ......++....++|++||++..
T Consensus 78 ~fd~ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~ 142 (223)
T d2ih2a1 78 AFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVF 142 (223)
T ss_dssp CEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEE
T ss_pred ccceecccCccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEE
Confidence 9999999864211100 00123445667789999998753
|
| >d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Hypothetical methyltransferase PH1374 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.17 E-value=4.3e-06 Score=75.88 Aligned_cols=114 Identities=17% Similarity=0.087 Sum_probs=86.4
Q ss_pred CCCCCCCEEEEECCcccHHHHHHHHc--CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC-CCcccEEE
Q 016351 74 KHHFQGKTVLDVGTGSGILAIWSAQA--GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL-PEKVDVII 149 (391)
Q Consensus 74 ~~~~~~~~VLDlGcGtG~l~~~~a~~--g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~-~~~~D~Iv 149 (391)
+...++.+|||+.||.|.=+..++.. +...++++|.+ .-+..+++++++.+..+ +.++..|...+.. ...||.|+
T Consensus 112 l~~~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~~~-i~~~~~d~~~~~~~~~~fD~IL 190 (313)
T d1ixka_ 112 LDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLN-VILFHSSSLHIGELNVEFDKIL 190 (313)
T ss_dssp HCCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCS-EEEESSCGGGGGGGCCCEEEEE
T ss_pred ccCCccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHhhc-cccccccccccccccccccEEE
Confidence 34568899999999999988777765 33479999999 88899999999999876 7778888777643 37899999
Q ss_pred Ecccccccc------------Cc-------chHHHHHHHHhccccCCeEEEcccceeE
Q 016351 150 SEWMGYFLL------------RE-------SMFDSVICARDRWLKPTGVMYPSHARMW 188 (391)
Q Consensus 150 se~~~~~~~------------~e-------~~l~~~l~~~~~~L~~gG~ii~~~~~~~ 188 (391)
.++..+... .. .....++....++|||||.++-+.+++.
T Consensus 191 vDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsTCSl~ 248 (313)
T d1ixka_ 191 LDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLE 248 (313)
T ss_dssp EECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCC
T ss_pred EccccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEeeccCC
Confidence 977533221 00 1234567778899999999997777654
|
| >d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: NOL1R species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.15 E-value=1.1e-05 Score=72.40 Aligned_cols=112 Identities=14% Similarity=0.087 Sum_probs=81.6
Q ss_pred CCCCCCEEEEECCcccHHHHHHHHc--CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC----CcccE
Q 016351 75 HHFQGKTVLDVGTGSGILAIWSAQA--GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP----EKVDV 147 (391)
Q Consensus 75 ~~~~~~~VLDlGcGtG~l~~~~a~~--g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~----~~~D~ 147 (391)
...++.+|||+.||.|.-+..+|.. +..+|+|+|++ .-+..+++++++.|+.+ +.+...|...+... ++||.
T Consensus 91 ~~~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~~~-~~~~~~d~~~~~~~~~~~~~fD~ 169 (293)
T d2b9ea1 91 DPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSC-CELAEEDFLAVSPSDPRYHEVHY 169 (293)
T ss_dssp CCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCS-EEEEECCGGGSCTTCGGGTTEEE
T ss_pred CCCccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCccc-eeeeehhhhhhcccccccceeeE
Confidence 3567899999999999988877764 44589999999 78899999999999977 89999998876432 67999
Q ss_pred EEEcccccccc--------------Ccc---h----HHHHHHHHhccccCCeEEEcccceeE
Q 016351 148 IISEWMGYFLL--------------RES---M----FDSVICARDRWLKPTGVMYPSHARMW 188 (391)
Q Consensus 148 Ivse~~~~~~~--------------~e~---~----l~~~l~~~~~~L~~gG~ii~~~~~~~ 188 (391)
|+.++..+... ... . ...++..+.+ |+|||.++-+.+++.
T Consensus 170 VL~DaPCSg~G~~~r~p~~~~~~~~~~~~~~~l~~~Q~~il~~a~~-l~~gG~lvYsTCSl~ 230 (293)
T d2b9ea1 170 ILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALT-FPSLQRLVYSTCSLC 230 (293)
T ss_dssp EEECCCCCC------------------CCHHHHHHHHHHHHHHHTT-CTTCCEEEEEESCCC
T ss_pred EeecCcccchhhhcccchhhccCCcchhhHHHHhhhhHHhHHHhhh-cccccEEEEeeccCC
Confidence 99987533321 000 0 1234444443 699999886666543
|
| >d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.14 E-value=4.3e-06 Score=74.85 Aligned_cols=114 Identities=13% Similarity=0.058 Sum_probs=83.5
Q ss_pred CCCCCCCEEEEECCcccHHHHHHHHcC-CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccC--CCCCcccEEE
Q 016351 74 KHHFQGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDI--VLPEKVDVII 149 (391)
Q Consensus 74 ~~~~~~~~VLDlGcGtG~l~~~~a~~g-~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~--~~~~~~D~Iv 149 (391)
+...++.+|||+.+|.|.=+..++..+ ..+|+|+|.+ .-+...++++++.|+.+ +.+...|.... ..++.||.|+
T Consensus 98 L~~~~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g~~~-~~~~~~~~~~~~~~~~~~fd~IL 176 (284)
T d1sqga2 98 LAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKA-TVKQGDGRYPSQWCGEQQFDRIL 176 (284)
T ss_dssp HCCCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCC-EEEECCTTCTHHHHTTCCEEEEE
T ss_pred cCccccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHhhhhhcccccc-eeeeccccccchhcccccccEEE
Confidence 345678999999999999888888764 3479999999 78899999999999875 44444443322 2346899999
Q ss_pred Ecccccccc------------Ccc-------hHHHHHHHHhccccCCeEEEcccceeE
Q 016351 150 SEWMGYFLL------------RES-------MFDSVICARDRWLKPTGVMYPSHARMW 188 (391)
Q Consensus 150 se~~~~~~~------------~e~-------~l~~~l~~~~~~L~~gG~ii~~~~~~~ 188 (391)
.+...+... .+. ....++..+.++|+|||.++-+.+++.
T Consensus 177 ~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~ 234 (284)
T d1sqga2 177 LDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVL 234 (284)
T ss_dssp EECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCC
T ss_pred EeccccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEeeecCc
Confidence 987543322 001 234677888899999999997777644
|
| >d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RNA methyltransferase FtsJ domain: RNA methyltransferase FtsJ species: Escherichia coli [TaxId: 562]
Probab=98.11 E-value=8.1e-06 Score=67.83 Aligned_cols=95 Identities=20% Similarity=0.300 Sum_probs=67.5
Q ss_pred CCCCEEEEECCcccHHHHHHHHc--CCCeEEEEechHHHHHHHHHHHHcCCCCcEEEEEcccccCC---------CCCcc
Q 016351 77 FQGKTVLDVGTGSGILAIWSAQA--GARKVYAVEATKMSDHARTLVKANNLQDVVEVIEGSVEDIV---------LPEKV 145 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~l~~~~a~~--g~~~V~avD~s~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~---------~~~~~ 145 (391)
.++.+||||||+.|.++..+++. ...+|+++|..+| ..+.+ +.++++|+.+.. ...++
T Consensus 21 k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~----------~~i~~-~~~~~~d~~~~~~~~~~~~~~~~~~~ 89 (180)
T d1ej0a_ 21 KPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPM----------DPIVG-VDFLQGDFRDELVMKALLERVGDSKV 89 (180)
T ss_dssp CTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCC----------CCCTT-EEEEESCTTSHHHHHHHHHHHTTCCE
T ss_pred CCCCeEEEEeccCCcceEEEEeeccccceEEEeecccc----------cccCC-ceEeecccccchhhhhhhhhccCcce
Confidence 46789999999999999998875 3458999998753 12333 899999987642 23689
Q ss_pred cEEEEccccccccCc--------chHHHHHHHHhccccCCeEEEc
Q 016351 146 DVIISEWMGYFLLRE--------SMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 146 D~Ivse~~~~~~~~e--------~~l~~~l~~~~~~L~~gG~ii~ 182 (391)
|+|+||......... ......+..+.++|++||.++.
T Consensus 90 DlVlSD~ap~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~ 134 (180)
T d1ej0a_ 90 QVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVV 134 (180)
T ss_dssp EEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred eEEEecccchhcccchhHHHHHHHHHHHHHHhhhhccCCCCcEEE
Confidence 999998753332211 1123445556789999999883
|
| >d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: High level kasugamycin resistance protein KsgA species: Escherichia coli [TaxId: 562]
Probab=98.10 E-value=7.4e-07 Score=78.37 Aligned_cols=80 Identities=11% Similarity=0.136 Sum_probs=59.9
Q ss_pred HHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCC----
Q 016351 69 SIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPE---- 143 (391)
Q Consensus 69 ~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~---- 143 (391)
.|...+...+++.|||||||+|.++..+++.+. +|+|||++ .+++..++.... .++++++++|+..+.+++
T Consensus 12 ~Iv~~~~~~~~d~vlEIGpG~G~LT~~Ll~~~~-~v~aiEiD~~l~~~L~~~~~~---~~~~~ii~~D~l~~~~~~~~~~ 87 (252)
T d1qyra_ 12 SIVSAINPQKGQAMVEIGPGLAALTEPVGERLD-QLTVIELDRDLAARLQTHPFL---GPKLTIYQQDAMTFNFGELAEK 87 (252)
T ss_dssp HHHHHHCCCTTCCEEEECCTTTTTHHHHHTTCS-CEEEECCCHHHHHHHHTCTTT---GGGEEEECSCGGGCCHHHHHHH
T ss_pred HHHHhcCCCCCCEEEEECCCchHHHHHHHccCC-ceEEEEeccchhHHHHHHhhh---ccchhHHhhhhhhhcccccccc
Confidence 344444556788999999999999999998876 79999999 888877764322 245999999999875431
Q ss_pred --cccEEEEcc
Q 016351 144 --KVDVIISEW 152 (391)
Q Consensus 144 --~~D~Ivse~ 152 (391)
+.-.|++++
T Consensus 88 ~~~~~~vvgNl 98 (252)
T d1qyra_ 88 MGQPLRVFGNL 98 (252)
T ss_dssp HTSCEEEEEEC
T ss_pred cCCCeEEEecc
Confidence 223566665
|
| >d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermus thermophilus [TaxId: 274]
Probab=97.94 E-value=1.6e-05 Score=66.03 Aligned_cols=105 Identities=18% Similarity=0.198 Sum_probs=76.9
Q ss_pred hcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC-----CC-Cc
Q 016351 72 QNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV-----LP-EK 144 (391)
Q Consensus 72 ~~~~~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~-----~~-~~ 144 (391)
..+...++..++|..+|.|..+..+.+.+. +|+|+|.+ .++..|++. ..+++.++++++.++. .. ++
T Consensus 12 ~~l~~~~g~~~vD~T~G~GGhs~~iL~~~~-~viaiD~D~~ai~~a~~~-----~~~~~~~~~~~f~~~~~~l~~~~~~~ 85 (182)
T d1wg8a2 12 DLLAVRPGGVYVDATLGGAGHARGILERGG-RVIGLDQDPEAVARAKGL-----HLPGLTVVQGNFRHLKRHLAALGVER 85 (182)
T ss_dssp HHHTCCTTCEEEETTCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHT-----CCTTEEEEESCGGGHHHHHHHTTCSC
T ss_pred HhcCCCCCCEEEEeCCCCcHHHHHHhcccC-cEEEEhhhhhHHHHHhhc-----cccceeEeehHHHHHHHHHHHcCCCc
Confidence 344457889999999999999999988865 89999999 777777653 2345999999988763 22 68
Q ss_pred ccEEEEccccccc---cCc----chHHHHHHHHhccccCCeEEEcc
Q 016351 145 VDVIISEWMGYFL---LRE----SMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 145 ~D~Ivse~~~~~~---~~e----~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
+|.|+.++ +... ... ..+...|+.....|++||.++.-
T Consensus 86 vdgIl~DL-GvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii 130 (182)
T d1wg8a2 86 VDGILADL-GVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVVI 130 (182)
T ss_dssp EEEEEEEC-SCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred cCEEEEEc-cCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEEE
Confidence 99999875 2211 100 12445677788999999987743
|
| >d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CmcI-like domain: Cephalosporin hydroxylase CmcI species: Streptomyces clavuligerus [TaxId: 1901]
Probab=97.88 E-value=1.4e-05 Score=69.13 Aligned_cols=116 Identities=14% Similarity=0.184 Sum_probs=75.4
Q ss_pred hhcCChHhHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHc----C-CCeEEEEech-HHHHHHHHHHHHcCCCCc
Q 016351 55 EMLSDRVRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQA----G-ARKVYAVEAT-KMSDHARTLVKANNLQDV 128 (391)
Q Consensus 55 ~ml~d~~r~~~~~~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~----g-~~~V~avD~s-~~~~~a~~~~~~~~~~~~ 128 (391)
.+++.......|.+.|.+. ++++||+||++.|.-+++++.. + ..+|+++|++ .....+. ...++
T Consensus 61 p~~k~p~d~~~~~eli~~~----KPk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~------~~~~~ 130 (232)
T d2bm8a1 61 RMLKDPDTQAVYHDMLWEL----RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPA------SDMEN 130 (232)
T ss_dssp ECCSCHHHHHHHHHHHHHH----CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCG------GGCTT
T ss_pred ecccCHHHHHHHHHHHHHh----CCCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhhh------ccccc
Confidence 4566677777777666654 5689999999999876665532 2 3589999997 4322211 11245
Q ss_pred EEEEEcccccCCC-----CCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcccc
Q 016351 129 VEVIEGSVEDIVL-----PEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 129 v~~i~~d~~~~~~-----~~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~~ 185 (391)
|+++++|..+... ...+|+|+.+.- +. .+..+..+ ...++|++||++|+...
T Consensus 131 I~~i~gDs~~~~~~~~l~~~~~dlIfID~~-H~--~~~v~~~~--~~~~lLk~GG~iIveD~ 187 (232)
T d2bm8a1 131 ITLHQGDCSDLTTFEHLREMAHPLIFIDNA-HA--NTFNIMKW--AVDHLLEEGDYFIIEDM 187 (232)
T ss_dssp EEEEECCSSCSGGGGGGSSSCSSEEEEESS-CS--SHHHHHHH--HHHHTCCTTCEEEECSC
T ss_pred eeeeecccccHHHHHHHHhcCCCEEEEcCC-cc--hHHHHHHH--HHhcccCcCCEEEEEcC
Confidence 9999999876432 135788887652 21 22223322 24579999999987754
|
| >d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Type I restriction enzyme StySJI M protein species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=97.72 E-value=5.3e-05 Score=71.61 Aligned_cols=114 Identities=15% Similarity=0.026 Sum_probs=80.7
Q ss_pred HHHHhcCCCCCCCEEEEECCcccHHHHHHHHcC----C----------CeEEEEech-HHHHHHHHHHHHcCCCC-cEEE
Q 016351 68 NSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAG----A----------RKVYAVEAT-KMSDHARTLVKANNLQD-VVEV 131 (391)
Q Consensus 68 ~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g----~----------~~V~avD~s-~~~~~a~~~~~~~~~~~-~v~~ 131 (391)
+.|...+...++.+|+|-.||+|.+...+.+.- . ..++|+|++ .+...|+.+..-++... ...+
T Consensus 152 ~~mv~ll~~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~g~~~~~~~i 231 (425)
T d2okca1 152 QAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSPI 231 (425)
T ss_dssp HHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCCSE
T ss_pred HhhheeccCcccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhcCCcccccee
Confidence 444444445567899999999999988776641 0 149999999 88888888888777653 3567
Q ss_pred EEcccccCCCCCcccEEEEccccccccC--------------cchHHHHHHHHhccccCCeEEE
Q 016351 132 IEGSVEDIVLPEKVDVIISEWMGYFLLR--------------ESMFDSVICARDRWLKPTGVMY 181 (391)
Q Consensus 132 i~~d~~~~~~~~~~D~Ivse~~~~~~~~--------------e~~l~~~l~~~~~~L~~gG~ii 181 (391)
..+|........+||+|++++.-..... ...-..++..+.++|++||++.
T Consensus 232 ~~~d~l~~~~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~ 295 (425)
T d2okca1 232 VCEDSLEKEPSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAA 295 (425)
T ss_dssp EECCTTTSCCSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEE
T ss_pred ecCchhhhhcccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcCCCCeEE
Confidence 8888877655589999999875321110 0112346777889999999765
|
| >d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhiQ-like domain: Hypothetical protein YhiQ species: Shigella flexneri [TaxId: 623]
Probab=97.57 E-value=6.9e-05 Score=64.99 Aligned_cols=75 Identities=21% Similarity=0.208 Sum_probs=56.7
Q ss_pred CEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHH---HHcC-----CCCcEEEEEcccccCC--CCCcccEE
Q 016351 80 KTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLV---KANN-----LQDVVEVIEGSVEDIV--LPEKVDVI 148 (391)
Q Consensus 80 ~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~---~~~~-----~~~~v~~i~~d~~~~~--~~~~~D~I 148 (391)
.+|||+-||.|..++.+|..|+ +|+++|.+ .+....+..+ ..+. +..+++++++|..++- ...+||+|
T Consensus 90 ~~VlD~TaGlG~Da~vlA~~G~-~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds~~~L~~~~~~~DvI 168 (250)
T d2oyra1 90 PDVVDATAGLGRDAFVLASVGC-RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQVV 168 (250)
T ss_dssp CCEEETTCTTCHHHHHHHHHTC-CEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTCSSCCSEE
T ss_pred CEEEECCCcccHHHHHHHhCCC-EEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcHHHHHhccCCCCCEE
Confidence 4899999999999999999997 69999999 5544444433 3221 1236999999987753 23679999
Q ss_pred EEccccc
Q 016351 149 ISEWMGY 155 (391)
Q Consensus 149 vse~~~~ 155 (391)
..++|..
T Consensus 169 YlDPMFp 175 (250)
T d2oyra1 169 YLDPMFP 175 (250)
T ss_dssp EECCCCC
T ss_pred EECCCCc
Confidence 9998753
|
| >d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap methylase domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 species: Dengue virus 2 [TaxId: 11060]
Probab=97.52 E-value=3.5e-05 Score=66.20 Aligned_cols=111 Identities=14% Similarity=0.159 Sum_probs=65.0
Q ss_pred HHhcCCCCCCCEEEEECCcccHHHHHHHHcC-CCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccE
Q 016351 70 IFQNKHHFQGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDV 147 (391)
Q Consensus 70 i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g-~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~~D~ 147 (391)
|.+.....+...|+|||||.|.++..++... ...|.|+++- +..+. -.....++. +.+++...+......++++|+
T Consensus 58 ~~~~~~~~~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG~d~~e~-P~~~~~~~~-ni~~~~~~~dv~~l~~~~~D~ 135 (257)
T d2p41a1 58 FVERNLVTPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHEE-PIPMSTYGW-NLVRLQSGVDVFFIPPERCDT 135 (257)
T ss_dssp HHHTTSSCCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTTSCC-CCCCCSTTG-GGEEEECSCCTTTSCCCCCSE
T ss_pred HHHhcCccCCCeEEEecCCCChHHHHHHhhcCCCceeEEEecCccccC-Ccccccccc-ccccchhhhhHHhcCCCcCCE
Confidence 3333334566789999999999999998773 2367888875 31100 000111111 235665554333334589999
Q ss_pred EEEccccccccCcc---hHHHHHHHHhccccCCeEEEc
Q 016351 148 IISEWMGYFLLRES---MFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 148 Ivse~~~~~~~~e~---~l~~~l~~~~~~L~~gG~ii~ 182 (391)
|+||.-......+- ..-.+++-+.++|+|||.|+.
T Consensus 136 vlcDm~ess~~~~vd~~Rtl~vLela~~wLk~gg~Fvv 173 (257)
T d2p41a1 136 LLCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCV 173 (257)
T ss_dssp EEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEE
T ss_pred EEeeCCCCCCCchhhhhhHHHHHHHHHHHcccCCEEEE
Confidence 99986322211111 122456777899999997763
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=97.30 E-value=0.00014 Score=60.00 Aligned_cols=100 Identities=22% Similarity=0.313 Sum_probs=64.1
Q ss_pred HHHHhcCCCCCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEc---cc-----
Q 016351 68 NSIFQNKHHFQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEG---SV----- 136 (391)
Q Consensus 68 ~~i~~~~~~~~~~~VLDlGcGt-G~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~---d~----- 136 (391)
.++.+.....++.+||-+|||. |.++..++++ |+++|+++|.+ ..++.|++ .|.. .++.- +.
T Consensus 18 ~al~~~~~~~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~----lGa~---~vi~~~~~~~~~~~~ 90 (182)
T d1vj0a2 18 HAFDEYPESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEE----IGAD---LTLNRRETSVEERRK 90 (182)
T ss_dssp HHHHTCSSCCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHH----TTCS---EEEETTTSCHHHHHH
T ss_pred HHHHHHhCCCCCCEEEEECCCccchhheeccccccccccccccccccccccccc----ccce---EEEeccccchHHHHH
Confidence 3455544556789999999986 7888888876 87789999999 77776654 3432 22221 21
Q ss_pred --ccCCCCCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 137 --EDIVLPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 137 --~~~~~~~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
.++..+..+|+|+-- .+. . ..++...++|+++|+++..
T Consensus 91 ~i~~~~~~~g~Dvvid~-vG~----~----~~~~~a~~~l~~~G~iv~~ 130 (182)
T d1vj0a2 91 AIMDITHGRGADFILEA-TGD----S----RALLEGSELLRRGGFYSVA 130 (182)
T ss_dssp HHHHHTTTSCEEEEEEC-SSC----T----THHHHHHHHEEEEEEEEEC
T ss_pred HHHHhhCCCCceEEeec-CCc----h----hHHHHHHHHhcCCCEEEEE
Confidence 111223569998842 111 1 2355566789999998744
|
| >d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Transcription factor sc-mtTFB species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.94 E-value=0.00084 Score=60.55 Aligned_cols=79 Identities=15% Similarity=0.171 Sum_probs=55.9
Q ss_pred cCChHhHHHHHHHHH--hcCCCCCCCEEEEECCcccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEE
Q 016351 57 LSDRVRMDAYFNSIF--QNKHHFQGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVI 132 (391)
Q Consensus 57 l~d~~r~~~~~~~i~--~~~~~~~~~~VLDlGcGtG~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i 132 (391)
|.|..-.+...+++. ......++..|||||+|.|.++..+.+. ++++|+++|++ ..++..++... .++++++
T Consensus 20 L~d~~i~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~~~~~L~~~~~----~~~~~ii 95 (322)
T d1i4wa_ 20 LWNPTVYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFE----GSPLQIL 95 (322)
T ss_dssp BCCHHHHHHHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTT----TSSCEEE
T ss_pred cCCHHHHHHHHHHhcCCccccccCCCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhcc----CCCcEEE
Confidence 555544444444332 1112235689999999999999999887 56789999999 78887776543 2458999
Q ss_pred EcccccC
Q 016351 133 EGSVEDI 139 (391)
Q Consensus 133 ~~d~~~~ 139 (391)
++|+..+
T Consensus 96 ~~D~l~~ 102 (322)
T d1i4wa_ 96 KRDPYDW 102 (322)
T ss_dssp CSCTTCH
T ss_pred eCchhhc
Confidence 9998754
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=96.93 E-value=0.0021 Score=52.27 Aligned_cols=98 Identities=19% Similarity=0.229 Sum_probs=63.9
Q ss_pred HHhcCCCCCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC------
Q 016351 70 IFQNKHHFQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV------ 140 (391)
Q Consensus 70 i~~~~~~~~~~~VLDlGcGt-G~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~------ 140 (391)
+.......++.+||-+|||. |.++..+++. |+.+|+++|.+ .-++.+++. |.. +++..+-.++.
T Consensus 20 ~~~~~~~~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~----Ga~---~~i~~~~~~~~~~i~~~ 92 (174)
T d1f8fa2 20 CINALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQL----GAT---HVINSKTQDPVAAIKEI 92 (174)
T ss_dssp HHTTTCCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHH----TCS---EEEETTTSCHHHHHHHH
T ss_pred HHHhhCCCCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHc----CCe---EEEeCCCcCHHHHHHHH
Confidence 34444567889999999986 6667777765 88888999998 666766653 432 34433322211
Q ss_pred CCCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 141 LPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 141 ~~~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
.++.+|+|+-.. + -...++...++++|+|.++..
T Consensus 93 t~gg~D~vid~~-G--------~~~~~~~~~~~~~~~G~i~~~ 126 (174)
T d1f8fa2 93 TDGGVNFALEST-G--------SPEILKQGVDALGILGKIAVV 126 (174)
T ss_dssp TTSCEEEEEECS-C--------CHHHHHHHHHTEEEEEEEEEC
T ss_pred cCCCCcEEEEcC-C--------cHHHHHHHHhcccCceEEEEE
Confidence 135799988421 1 123566677889999998754
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=96.89 E-value=0.00012 Score=60.06 Aligned_cols=94 Identities=19% Similarity=0.301 Sum_probs=61.7
Q ss_pred CCCCCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEccccc-------CCCCC
Q 016351 74 KHHFQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVED-------IVLPE 143 (391)
Q Consensus 74 ~~~~~~~~VLDlGcGt-G~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~-------~~~~~ 143 (391)
....++.+||-+|||. |.++..+++. |+++|+++|.+ .-++.|++ .|.. .++.-.-.+ +....
T Consensus 23 a~~~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~----lGa~---~~i~~~~~~~~~~v~~~t~g~ 95 (174)
T d1jqba2 23 ADIEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKF----YGAT---DILNYKNGHIEDQVMKLTNGK 95 (174)
T ss_dssp TTCCTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHH----HTCS---EEECGGGSCHHHHHHHHTTTS
T ss_pred hCCCCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHh----hCcc---ccccccchhHHHHHHHHhhcc
Confidence 4567888999999997 8888888887 78789999999 66666654 3332 233222111 11224
Q ss_pred cccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 144 KVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 144 ~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
.+|+|+--. +. +..++...++++|+|.++..
T Consensus 96 G~D~vid~~-g~--------~~~~~~a~~~~~~~G~iv~~ 126 (174)
T d1jqba2 96 GVDRVIMAG-GG--------SETLSQAVKMVKPGGIISNI 126 (174)
T ss_dssp CEEEEEECS-SC--------TTHHHHHHHHEEEEEEEEEC
T ss_pred CcceEEEcc-CC--------HHHHHHHHHHHhcCCEEEEE
Confidence 599988421 11 12355556789999998854
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=96.89 E-value=0.00039 Score=56.04 Aligned_cols=97 Identities=19% Similarity=0.173 Sum_probs=65.9
Q ss_pred CCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC-CcccEEEEccc
Q 016351 78 QGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIISEWM 153 (391)
Q Consensus 78 ~~~~VLDlGcGt-G~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~-~~~D~Ivse~~ 153 (391)
++.+|+-||+|. |..+...|+. |+ +|+++|.+ +.++..+.....+ ++....+-..+... ...|+||+-.+
T Consensus 31 ~pa~V~ViGaGvaG~~A~~~A~~lGA-~V~~~D~~~~~l~~l~~~~~~~-----~~~~~~~~~~l~~~~~~aDivI~aal 104 (168)
T d1pjca1 31 KPGKVVILGGGVVGTEAAKMAVGLGA-QVQIFDINVERLSYLETLFGSR-----VELLYSNSAEIETAVAEADLLIGAVL 104 (168)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHGGG-----SEEEECCHHHHHHHHHTCSEEEECCC
T ss_pred CCcEEEEECCChHHHHHHHHHhhCCC-EEEEEeCcHHHHHHHHHhhccc-----ceeehhhhhhHHHhhccCcEEEEeee
Confidence 568999999998 6777776665 77 89999999 7777766655432 66666655444322 67999998443
Q ss_pred cccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 154 GYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 154 ~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
......+..+-+++.+.+|||.+++--
T Consensus 105 ---ipG~~aP~lIt~~mv~~Mk~GSVIVDv 131 (168)
T d1pjca1 105 ---VPGRRAPILVPASLVEQMRTGSVIVDV 131 (168)
T ss_dssp ---CTTSSCCCCBCHHHHTTSCTTCEEEET
T ss_pred ---cCCcccCeeecHHHHhhcCCCcEEEEe
Confidence 222222333445666789999988843
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=96.83 E-value=0.00021 Score=59.76 Aligned_cols=101 Identities=20% Similarity=0.145 Sum_probs=64.4
Q ss_pred CCCCCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEccccc-------CCCCC
Q 016351 74 KHHFQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVED-------IVLPE 143 (391)
Q Consensus 74 ~~~~~~~~VLDlGcGt-G~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~-------~~~~~ 143 (391)
....++.+||.+|||. |.++..+++. |+.+|+++|.+ ..++.|++. |.. .++...-.+ +.-+.
T Consensus 21 a~v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~----Ga~---~~~~~~~~~~~~~i~~~t~g~ 93 (195)
T d1kola2 21 AGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQ----GFE---IADLSLDTPLHEQIAALLGEP 93 (195)
T ss_dssp TTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT----TCE---EEETTSSSCHHHHHHHHHSSS
T ss_pred hCCCCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhc----ccc---EEEeCCCcCHHHHHHHHhCCC
Confidence 4567889999999998 7777777765 88899999999 777776643 421 222211111 11235
Q ss_pred cccEEEEccccc--------cccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 144 KVDVIISEWMGY--------FLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 144 ~~D~Ivse~~~~--------~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
.+|+++- .++. ..... .....++...+.++|+|.++..
T Consensus 94 g~D~vid-~vG~~~~~~~~~~~~~~-~~~~~l~~~~~~~r~gG~v~~~ 139 (195)
T d1kola2 94 EVDCAVD-AVGFEARGHGHEGAKHE-APATVLNSLMQVTRVAGKIGIP 139 (195)
T ss_dssp CEEEEEE-CCCTTCBCSSTTGGGSB-CTTHHHHHHHHHEEEEEEEEEC
T ss_pred CcEEEEE-CccccccCCcccceeec-CcHHHHHHHHHHHhcCCEEEEe
Confidence 6899884 2221 11111 1235688888999999998754
|
| >d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: M.EcoKI species: Escherichia coli [TaxId: 562]
Probab=96.77 E-value=0.00096 Score=64.36 Aligned_cols=114 Identities=11% Similarity=-0.036 Sum_probs=72.5
Q ss_pred HHHHhcCCCCCCCEEEEECCcccHHHHHHHHc----C---------------CCeEEEEech-HHHHHHHHHHHHcCCCC
Q 016351 68 NSIFQNKHHFQGKTVLDVGTGSGILAIWSAQA----G---------------ARKVYAVEAT-KMSDHARTLVKANNLQD 127 (391)
Q Consensus 68 ~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~----g---------------~~~V~avD~s-~~~~~a~~~~~~~~~~~ 127 (391)
+.|...+...++.+|+|-.||+|.+...+.+. . ...++|+|++ .+...|+.++--.+...
T Consensus 154 ~~mv~ll~~~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~nl~l~~~~~ 233 (524)
T d2ar0a1 154 KTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEG 233 (524)
T ss_dssp HHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCC
T ss_pred HhhhhcccCccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHHHHHHhhcccc
Confidence 44555555566789999999999998776653 1 0158999999 88888888877666542
Q ss_pred c----EEEEEcccccC--CCCCcccEEEEccccccccCc-----------chHHHHHHHHhccccCCeEEE
Q 016351 128 V----VEVIEGSVEDI--VLPEKVDVIISEWMGYFLLRE-----------SMFDSVICARDRWLKPTGVMY 181 (391)
Q Consensus 128 ~----v~~i~~d~~~~--~~~~~~D~Ivse~~~~~~~~e-----------~~l~~~l~~~~~~L~~gG~ii 181 (391)
. -.+..++.... ....+||+|++++.-..-... ..-..++..+.+.|++||++.
T Consensus 234 ~i~~~~~~~~~~~l~~d~~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~gGr~a 304 (524)
T d2ar0a1 234 NLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAA 304 (524)
T ss_dssp BGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEE
T ss_pred cccccchhhhhhhhhhcccccccceeEEecCCccccccccchhhhccccccccHHHHHHHHHhccccCcEE
Confidence 1 12333333221 112689999998742211100 111246777789999999765
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.75 E-value=0.00093 Score=54.13 Aligned_cols=94 Identities=19% Similarity=0.203 Sum_probs=59.7
Q ss_pred CCCCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEc-ccccC--CCCCcccEE
Q 016351 75 HHFQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEG-SVEDI--VLPEKVDVI 148 (391)
Q Consensus 75 ~~~~~~~VLDlGcGt-G~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~-d~~~~--~~~~~~D~I 148 (391)
...++.+||.+|+|. |.++..+++. |+ +|+++|.+ ..++.|++ .|.. .++.. +..+. ...+.+|+|
T Consensus 24 ~~~~g~~vlI~GaG~vG~~a~q~ak~~G~-~vi~~~~~~~k~~~a~~----lGa~---~~i~~~~~~~~~~~~~~~~d~v 95 (168)
T d1piwa2 24 GCGPGKKVGIVGLGGIGSMGTLISKAMGA-ETYVISRSSRKREDAMK----MGAD---HYIATLEEGDWGEKYFDTFDLI 95 (168)
T ss_dssp TCSTTCEEEEECCSHHHHHHHHHHHHHTC-EEEEEESSSTTHHHHHH----HTCS---EEEEGGGTSCHHHHSCSCEEEE
T ss_pred CcCCCCEEEEECCCCcchhHHHHhhhccc-cccccccchhHHHHhhc----cCCc---EEeeccchHHHHHhhhcccceE
Confidence 456889999999994 7888888876 87 79999999 77777665 3432 22321 11111 123679988
Q ss_pred EEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 149 ISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 149 vse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
+.- .+... . ..+....+.|+|+|+++..
T Consensus 96 i~~-~~~~~--~----~~~~~~~~~l~~~G~iv~~ 123 (168)
T d1piwa2 96 VVC-ASSLT--D----IDFNIMPKAMKVGGRIVSI 123 (168)
T ss_dssp EEC-CSCST--T----CCTTTGGGGEEEEEEEEEC
T ss_pred EEE-ecCCc--c----chHHHHHHHhhccceEEEe
Confidence 751 11111 1 0133456889999998854
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.72 E-value=0.0013 Score=53.41 Aligned_cols=94 Identities=24% Similarity=0.225 Sum_probs=61.2
Q ss_pred CCCCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccC---------CCC
Q 016351 75 HHFQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDI---------VLP 142 (391)
Q Consensus 75 ~~~~~~~VLDlGcGt-G~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~---------~~~ 142 (391)
...++.+||-+|||. |.++..++++ |+.+|+++|.+ .-++.|++ .|.. .++..+-.+. ..+
T Consensus 23 ~~~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~----~Ga~---~~~~~~~~~~~~~~~~~~~~~g 95 (171)
T d1pl8a2 23 GVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKE----IGAD---LVLQISKESPQEIARKVEGQLG 95 (171)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH----TTCS---EEEECSSCCHHHHHHHHHHHHT
T ss_pred CCCCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHH----hCCc---ccccccccccccccccccccCC
Confidence 356788999999987 6777777776 88889999999 66666654 3443 2222211111 123
Q ss_pred CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEccc
Q 016351 143 EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 143 ~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~ 184 (391)
..+|+|+--. + -+..++...++++++|+++...
T Consensus 96 ~g~Dvvid~~-G--------~~~~~~~a~~~~~~gG~iv~~G 128 (171)
T d1pl8a2 96 CKPEVTIECT-G--------AEASIQAGIYATRSGGTLVLVG 128 (171)
T ss_dssp SCCSEEEECS-C--------CHHHHHHHHHHSCTTCEEEECS
T ss_pred CCceEEEecc-C--------CchhHHHHHHHhcCCCEEEEEe
Confidence 5789988521 1 1235666778899999987554
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=96.57 E-value=0.0046 Score=50.25 Aligned_cols=98 Identities=17% Similarity=0.171 Sum_probs=63.8
Q ss_pred HHhcCCCCCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEccccc-C------
Q 016351 70 IFQNKHHFQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVED-I------ 139 (391)
Q Consensus 70 i~~~~~~~~~~~VLDlGcGt-G~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~-~------ 139 (391)
+.+.....++.+||-+|||. |.+++.++++ |+++|+++|.+ .-++.|++ .|.. .++.....+ .
T Consensus 20 ~~~~a~v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~----~Ga~---~~i~~~~~~~~~~~~~~ 92 (174)
T d1e3ia2 20 AINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKA----LGAT---DCLNPRELDKPVQDVIT 92 (174)
T ss_dssp HHTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH----TTCS---EEECGGGCSSCHHHHHH
T ss_pred HHHhhCCCCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHH----hCCC---cccCCccchhhhhhhHh
Confidence 33344567889999999998 8888888887 88889999999 65655554 4443 233221111 0
Q ss_pred -CCCCcccEEEEccccccccCcchHHHHHHHHhccccCC-eEEEcc
Q 016351 140 -VLPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPT-GVMYPS 183 (391)
Q Consensus 140 -~~~~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~g-G~ii~~ 183 (391)
..++.+|+++-- .+ .+..+....+.++++ |.++..
T Consensus 93 ~~~~~G~d~vie~-~G--------~~~~~~~a~~~~~~g~G~~v~v 129 (174)
T d1e3ia2 93 ELTAGGVDYSLDC-AG--------TAQTLKAAVDCTVLGWGSCTVV 129 (174)
T ss_dssp HHHTSCBSEEEES-SC--------CHHHHHHHHHTBCTTTCEEEEC
T ss_pred hhhcCCCcEEEEe-cc--------cchHHHHHHHHhhcCCeEEEec
Confidence 123678999841 11 123566677888886 888754
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=96.56 E-value=0.0034 Score=51.06 Aligned_cols=97 Identities=21% Similarity=0.179 Sum_probs=59.2
Q ss_pred HhcCCCCCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccC--------
Q 016351 71 FQNKHHFQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDI-------- 139 (391)
Q Consensus 71 ~~~~~~~~~~~VLDlGcGt-G~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~-------- 139 (391)
.+.....++.+||-+|||. |.+++.++++ |+++|+++|.+ .-++.|++ .|.. .++.-.-.+.
T Consensus 20 ~~~a~~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~----lGa~---~~i~~~~~d~~~~~~~~~ 92 (174)
T d1p0fa2 20 VNTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIE----LGAT---ECLNPKDYDKPIYEVICE 92 (174)
T ss_dssp HTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHH----TTCS---EEECGGGCSSCHHHHHHH
T ss_pred HHhhCCCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHH----cCCc---EEEcCCCchhHHHHHHHH
Confidence 3344567889999999997 6667777775 88899999999 77777764 4433 2332111111
Q ss_pred CCCCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEc
Q 016351 140 VLPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 140 ~~~~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~ 182 (391)
..++.+|+++-.. + ....+...+..+++++|.++.
T Consensus 93 ~~~~G~d~vid~~-g-------~~~~~~~~~~~~~~~~G~~v~ 127 (174)
T d1p0fa2 93 KTNGGVDYAVECA-G-------RIETMMNALQSTYCGSGVTVV 127 (174)
T ss_dssp HTTSCBSEEEECS-C-------CHHHHHHHHHTBCTTTCEEEE
T ss_pred hcCCCCcEEEEcC-C-------CchHHHHHHHHHHHhcCceEE
Confidence 1235689888522 1 123334444445566687764
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=96.48 E-value=0.0087 Score=48.55 Aligned_cols=99 Identities=16% Similarity=0.201 Sum_probs=61.4
Q ss_pred HHhcCCCCCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEc-ccccC------
Q 016351 70 IFQNKHHFQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEG-SVEDI------ 139 (391)
Q Consensus 70 i~~~~~~~~~~~VLDlGcGt-G~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~-d~~~~------ 139 (391)
+.+.....++..||-+|||. |.++..++++ |+++|+++|.+ +.++.|++.-. . .++.- +....
T Consensus 21 v~~~~~~~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~GA----~---~~in~~~~~~~~~~~~~ 93 (176)
T d1d1ta2 21 AVKTGKVKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVGA----T---ECISPKDSTKPISEVLS 93 (176)
T ss_dssp HHTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHHTC----S---EEECGGGCSSCHHHHHH
T ss_pred HHHhhCCCCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhcCC----c---EEECccccchHHHHHHH
Confidence 44444467889999999997 6667777765 87899999999 88888776533 2 23321 11110
Q ss_pred -CCCCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 140 -VLPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 140 -~~~~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
..+..+|+++-.. + ....+...+..+++.+|.++..
T Consensus 94 ~~~g~G~d~vi~~~-g-------~~~~~~~a~~~~~~~~G~~v~v 130 (176)
T d1d1ta2 94 EMTGNNVGYTFEVI-G-------HLETMIDALASCHMNYGTSVVV 130 (176)
T ss_dssp HHHTSCCCEEEECS-C-------CHHHHHHHHTTSCTTTCEEEEC
T ss_pred HhccccceEEEEeC-C-------chHHHHHHHHHhhcCCeEEEEE
Confidence 1235789887522 1 1234455555666776887743
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.40 E-value=0.004 Score=50.47 Aligned_cols=99 Identities=22% Similarity=0.232 Sum_probs=61.0
Q ss_pred HHhcCCCCCCCEEEEECC-c-ccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEccccc----CCC
Q 016351 70 IFQNKHHFQGKTVLDVGT-G-SGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVED----IVL 141 (391)
Q Consensus 70 i~~~~~~~~~~~VLDlGc-G-tG~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~----~~~ 141 (391)
+.+.....++.+||-.|+ | .|.+++.+++. |+ +|++++.+ +..+.++ +.|....+..-..|..+ ...
T Consensus 20 l~~~~~~~~g~~VlV~Ga~G~vG~~aiq~a~~~G~-~vi~~~~~~~~~~~~~----~~Ga~~vi~~~~~~~~~~i~~~t~ 94 (174)
T d1yb5a2 20 LIHSACVKAGESVLVHGASGGVGLAACQIARAYGL-KILGTAGTEEGQKIVL----QNGAHEVFNHREVNYIDKIKKYVG 94 (174)
T ss_dssp HHTTSCCCTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHH----HTTCSEEEETTSTTHHHHHHHHHC
T ss_pred HHHHhCCCCCCEEEEEeccccccccccccccccCc-cccccccccccccccc----ccCcccccccccccHHHHhhhhhc
Confidence 444445568899999997 3 47788888887 77 79998877 5555554 45553212111111111 112
Q ss_pred CCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 142 PEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 142 ~~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
++.+|+|+... + ...+....+.|+|+|.++..
T Consensus 95 ~~g~d~v~d~~-g---------~~~~~~~~~~l~~~G~iv~~ 126 (174)
T d1yb5a2 95 EKGIDIIIEML-A---------NVNLSKDLSLLSHGGRVIVV 126 (174)
T ss_dssp TTCEEEEEESC-H---------HHHHHHHHHHEEEEEEEEEC
T ss_pred cCCceEEeecc-c---------HHHHHHHHhccCCCCEEEEE
Confidence 36799998622 1 12456666889999998854
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=96.40 E-value=0.0089 Score=48.18 Aligned_cols=92 Identities=17% Similarity=0.195 Sum_probs=60.4
Q ss_pred CCCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccC------CCCCccc
Q 016351 76 HFQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDI------VLPEKVD 146 (391)
Q Consensus 76 ~~~~~~VLDlGcGt-G~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~------~~~~~~D 146 (391)
..++.+||-+|+|. |.++..++++ |+.+|+++|.+ .-++.+++ .+.. .++..+-... ..+..+|
T Consensus 30 ~~~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~----~ga~---~~i~~~~~~~~~~~~~~~~~g~d 102 (172)
T d1h2ba2 30 LYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAER----LGAD---HVVDARRDPVKQVMELTRGRGVN 102 (172)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHH----TTCS---EEEETTSCHHHHHHHHTTTCCEE
T ss_pred cCCCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhh----cccc---eeecCcccHHHHHHHhhCCCCce
Confidence 45789999999987 6666676665 88899999999 66666654 3432 3443321111 1235689
Q ss_pred EEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 147 VIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 147 ~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
+|+-.. + -...++...+.|+++|+++..
T Consensus 103 ~vid~~-g--------~~~~~~~a~~~l~~~G~iv~~ 130 (172)
T d1h2ba2 103 VAMDFV-G--------SQATVDYTPYLLGRMGRLIIV 130 (172)
T ss_dssp EEEESS-C--------CHHHHHHGGGGEEEEEEEEEC
T ss_pred EEEEec-C--------cchHHHHHHHHHhCCCEEEEE
Confidence 888522 1 123467778899999998854
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=96.15 E-value=0.0097 Score=47.70 Aligned_cols=94 Identities=20% Similarity=0.289 Sum_probs=60.2
Q ss_pred CCCCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccC----------CC
Q 016351 75 HHFQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDI----------VL 141 (391)
Q Consensus 75 ~~~~~~~VLDlGcGt-G~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~----------~~ 141 (391)
...++.+||-+|||. |.++..++++ |+ +|+++|.+ .-++.|++. +.. ..+...+..+. ..
T Consensus 23 ~~~~g~~vlV~G~G~vG~~~~~~ak~~Ga-~vi~v~~~~~r~~~a~~~----ga~--~~~~~~~~~~~~~~~~~~~~~~~ 95 (170)
T d1e3ja2 23 GVQLGTTVLVIGAGPIGLVSVLAAKAYGA-FVVCTARSPRRLEVAKNC----GAD--VTLVVDPAKEEESSIIERIRSAI 95 (170)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHT----TCS--EEEECCTTTSCHHHHHHHHHHHS
T ss_pred CCCCCCEEEEEcccccchhhHhhHhhhcc-cccccchHHHHHHHHHHc----CCc--EEEeccccccccchhhhhhhccc
Confidence 356788999999995 7888877776 76 89999999 767766653 322 23322211110 12
Q ss_pred CCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEccc
Q 016351 142 PEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSH 184 (391)
Q Consensus 142 ~~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~ 184 (391)
++.+|+|+--. + . +..+....++|+++|.++...
T Consensus 96 g~g~D~vid~~-g----~----~~~~~~a~~~~~~~G~iv~~G 129 (170)
T d1e3ja2 96 GDLPNVTIDCS-G----N----EKCITIGINITRTGGTLMLVG 129 (170)
T ss_dssp SSCCSEEEECS-C----C----HHHHHHHHHHSCTTCEEEECS
T ss_pred ccCCceeeecC-C----C----hHHHHHHHHHHhcCCceEEEe
Confidence 35689888421 1 1 234566667899999988543
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=95.78 E-value=0.013 Score=46.95 Aligned_cols=93 Identities=26% Similarity=0.243 Sum_probs=58.6
Q ss_pred CCCCCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccC--CCCCcccEE
Q 016351 74 KHHFQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDI--VLPEKVDVI 148 (391)
Q Consensus 74 ~~~~~~~~VLDlGcGt-G~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~--~~~~~~D~I 148 (391)
....++.+||-+|||. |.++..++++ |+ +++++|.+ +-.+.+++ .|.. .++...-.+. ...+.+|++
T Consensus 26 ~~~~~G~~VlI~GaG~vG~~a~qlak~~Ga-~~i~~~~~~~~~~~a~~----lGad---~~i~~~~~~~~~~~~~~~D~v 97 (168)
T d1uufa2 26 WQAGPGKKVGVVGIGGLGHMGIKLAHAMGA-HVVAFTTSEAKREAAKA----LGAD---EVVNSRNADEMAAHLKSFDFI 97 (168)
T ss_dssp TTCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHH----HTCS---EEEETTCHHHHHTTTTCEEEE
T ss_pred hCCCCCCEEEEeccchHHHHHHHHhhcccc-cchhhccchhHHHHHhc----cCCc---EEEECchhhHHHHhcCCCcee
Confidence 4567889999999986 7788888886 77 67788888 65565554 3432 2332221111 122679998
Q ss_pred EEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 149 ISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 149 vse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
+-.. + ... .+....+.|+++|+++..
T Consensus 98 id~~-g----~~~----~~~~~~~~l~~~G~iv~~ 123 (168)
T d1uufa2 98 LNTV-A----APH----NLDDFTTLLKRDGTMTLV 123 (168)
T ss_dssp EECC-S----SCC----CHHHHHTTEEEEEEEEEC
T ss_pred eeee-e----cch----hHHHHHHHHhcCCEEEEe
Confidence 8522 1 111 244456789999998854
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=95.75 E-value=0.0027 Score=51.22 Aligned_cols=94 Identities=22% Similarity=0.253 Sum_probs=61.1
Q ss_pred CCCCCCCEEEEECC-c-ccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccC-------CCC
Q 016351 74 KHHFQGKTVLDVGT-G-SGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDI-------VLP 142 (391)
Q Consensus 74 ~~~~~~~~VLDlGc-G-tG~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~-------~~~ 142 (391)
....++.+||-+|| | .|.++..++++ |..+|+++|.+ .-++.+++ .|.. .++..+-.++ ..+
T Consensus 23 ~~~~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~----~Ga~---~~i~~~~~~~~~~~~~~~~~ 95 (170)
T d1jvba2 23 ASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKR----AGAD---YVINASMQDPLAEIRRITES 95 (170)
T ss_dssp TTCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHH----HTCS---EEEETTTSCHHHHHHHHTTT
T ss_pred hCCCCCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHH----cCCc---eeeccCCcCHHHHHHHHhhc
Confidence 34567899999997 4 46677766665 87799999999 66666654 3432 2333332221 223
Q ss_pred CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 143 EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 143 ~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
+.+|+|+.-. + -...++...+.++|+|.++..
T Consensus 96 ~~~d~vid~~-g--------~~~~~~~a~~~l~~~G~iv~~ 127 (170)
T d1jvba2 96 KGVDAVIDLN-N--------SEKTLSVYPKALAKQGKYVMV 127 (170)
T ss_dssp SCEEEEEESC-C--------CHHHHTTGGGGEEEEEEEEEC
T ss_pred ccchhhhccc-c--------cchHHHhhhhhcccCCEEEEe
Confidence 6799888521 1 123466677899999998755
|
| >d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase AviRa domain: rRNA methyltransferase AviRa species: Streptomyces viridochromogenes [TaxId: 1938]
Probab=95.63 E-value=0.019 Score=49.04 Aligned_cols=107 Identities=16% Similarity=0.055 Sum_probs=73.2
Q ss_pred CCCCCEEEEECCcccHHHHHHHHcCC-----------------------------------------CeEEEEech-HHH
Q 016351 76 HFQGKTVLDVGTGSGILAIWSAQAGA-----------------------------------------RKVYAVEAT-KMS 113 (391)
Q Consensus 76 ~~~~~~VLDlGcGtG~l~~~~a~~g~-----------------------------------------~~V~avD~s-~~~ 113 (391)
...+..++|--||+|.+.+.+|-... .+++|.|++ .++
T Consensus 48 w~~~~~LlDPmCGSGTilIEAAlia~niaPGl~R~f~fe~w~~~~~~~w~~l~~~a~~~~~~~~~~~~~i~G~D~d~~ai 127 (249)
T d1o9ga_ 48 GDGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAA 127 (249)
T ss_dssp CCSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHH
T ss_pred CCCCCceeccccCccHHHHHHHHHHhCcCcCcccchhhhcccccCHHHHHHHHHHHHHHHhccccccCCccccccCHHHH
Confidence 34456799999999999877664210 035788888 788
Q ss_pred HHH---HHHHHHcCCCCcEEEEEcccccCC------CCCcccEEEEccc-cccccCc-----chHHHHHHHHhccccCCe
Q 016351 114 DHA---RTLVKANNLQDVVEVIEGSVEDIV------LPEKVDVIISEWM-GYFLLRE-----SMFDSVICARDRWLKPTG 178 (391)
Q Consensus 114 ~~a---~~~~~~~~~~~~v~~i~~d~~~~~------~~~~~D~Ivse~~-~~~~~~e-----~~l~~~l~~~~~~L~~gG 178 (391)
..| +++++..|+.+.|++.+.|+.+.. .+...++|||++. +.-+..+ ..+..+...+.+.+....
T Consensus 128 ~~A~~~r~n~~~Agl~~~i~i~~~d~f~~~~~~~~~~~~~~GlIVtNPPYGERl~~~~~~~~~~~~~~~~~l~~~~p~~s 207 (249)
T d1o9ga_ 128 QAARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPAHA 207 (249)
T ss_dssp HHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCTTC
T ss_pred HHHHHHHHHHHHcCCCceeeeeecchhccCcchhccCCCCCCEEEeCCCccccccccccchHHHHHHHHHHHHccCCCCc
Confidence 777 568899999999999999986643 3467899999874 2233212 124555566667665555
Q ss_pred EEEc
Q 016351 179 VMYP 182 (391)
Q Consensus 179 ~ii~ 182 (391)
.++.
T Consensus 208 ~~~i 211 (249)
T d1o9ga_ 208 VIAV 211 (249)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 5544
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=95.49 E-value=0.017 Score=46.00 Aligned_cols=91 Identities=21% Similarity=0.196 Sum_probs=56.7
Q ss_pred CCCCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC------CCCcc
Q 016351 75 HHFQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV------LPEKV 145 (391)
Q Consensus 75 ~~~~~~~VLDlGcGt-G~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~------~~~~~ 145 (391)
...++.+||-+|+|. |.++..+++. |+ +|+++|.+ ..++.+++ .|.. .++..+-.+.. ..+..
T Consensus 24 ~~~~g~~VlV~GaG~vG~~~~~~ak~~G~-~Vi~~~~~~~~~~~a~~----~Ga~---~~i~~~~~~~~~~~~~~~~g~~ 95 (166)
T d1llua2 24 NARPGQWVAISGIGGLGHVAVQYARAMGL-HVAAIDIDDAKLELARK----LGAS---LTVNARQEDPVEAIQRDIGGAH 95 (166)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHH----TTCS---EEEETTTSCHHHHHHHHHSSEE
T ss_pred CCCCCCEEEEeeccccHHHHHHHHHHcCC-ccceecchhhHHHhhhc----cCcc---ccccccchhHHHHHHHhhcCCc
Confidence 456789999999987 7788888887 65 89999999 66666553 4442 33332222210 11233
Q ss_pred cEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 146 DVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 146 D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
|.|++.. -...+....++|+++|+++..
T Consensus 96 ~~i~~~~----------~~~~~~~~~~~l~~~G~iv~~ 123 (166)
T d1llua2 96 GVLVTAV----------SNSAFGQAIGMARRGGTIALV 123 (166)
T ss_dssp EEEECCS----------CHHHHHHHHTTEEEEEEEEEC
T ss_pred ccccccc----------cchHHHHHHHHhcCCcEEEEE
Confidence 4444311 123456667899999998854
|
| >d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HaeIII species: Haemophilus aegyptius [TaxId: 197575]
Probab=95.22 E-value=0.014 Score=51.69 Aligned_cols=65 Identities=23% Similarity=0.250 Sum_probs=50.9
Q ss_pred EEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC--CcccEEEEcc
Q 016351 81 TVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP--EKVDVIISEW 152 (391)
Q Consensus 81 ~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~--~~~D~Ivse~ 152 (391)
+|||+-||.|.+++.+.++|.+.|.++|++ .+++..+.+. + -+++.+|+.++... .++|+++.-+
T Consensus 2 k~~~lF~G~Gg~~~gl~~aG~~~~~a~e~d~~a~~~~~~N~-----~--~~~~~~Di~~~~~~~~~~~dll~~g~ 69 (324)
T d1dcta_ 2 NLISLFSGAGGLDLGFQKAGFRIICANEYDKSIWKTYESNH-----S--AKLIKGDISKISSDEFPKCDGIIGGP 69 (324)
T ss_dssp EEEEESCSSCHHHHHHHHHTCEEEEEEECCHHHHHHHHHHC-----C--SEEEESCTTTSCGGGSCCCSEEEECC
T ss_pred eEEEeCcCcCHHHHHHHHCCCEEEEEEeCCHHHHHHHHHHC-----C--CCCccCChhhCCHhHcccccEEeecc
Confidence 699999999999999999999888899999 5555555443 2 36688999998543 5789999743
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.15 E-value=0.031 Score=48.08 Aligned_cols=76 Identities=18% Similarity=0.202 Sum_probs=60.2
Q ss_pred CCCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC--------C--
Q 016351 76 HFQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV--------L-- 141 (391)
Q Consensus 76 ~~~~~~VLDlGcGtG~---l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~--------~-- 141 (391)
.+++++||-.|+++|+ ++..+++.|+ +|+.++.+ +.++.+.+.++..+.+.++.++++|+.+.+ .
T Consensus 7 ~lk~Kv~lITGas~GIG~aiA~~la~~G~-~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~v~~~~~ 85 (257)
T d1xg5a_ 7 RWRDRLALVTGASGGIGAAVARALVQQGL-KVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRS 85 (257)
T ss_dssp GGTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCceEEEEEccCCCHHHHHHHHHHHHH
Confidence 3678999999999985 5667788898 79999999 777777777777777777999999987742 0
Q ss_pred -CCcccEEEEcc
Q 016351 142 -PEKVDVIISEW 152 (391)
Q Consensus 142 -~~~~D~Ivse~ 152 (391)
-+++|++|.+.
T Consensus 86 ~~g~iD~lVnnA 97 (257)
T d1xg5a_ 86 QHSGVDICINNA 97 (257)
T ss_dssp HHCCCSEEEECC
T ss_pred hcCCCCEEEecc
Confidence 15799999754
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=95.08 E-value=0.0054 Score=49.87 Aligned_cols=97 Identities=22% Similarity=0.204 Sum_probs=56.1
Q ss_pred CCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEE----------cccccCC----
Q 016351 78 QGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIE----------GSVEDIV---- 140 (391)
Q Consensus 78 ~~~~VLDlGcGt-G~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~----------~d~~~~~---- 140 (391)
++.+||-||+|. |..+...|.. |+ +|+++|.+ ..++..++..... +++.. +...++.
T Consensus 28 ~pa~VvViGaGvaG~~Aa~~A~~lGA-~V~v~D~~~~~~~~l~~l~~~~-----i~~~~~~~~~~~~~~gyA~~~s~~~~ 101 (183)
T d1l7da1 28 PPARVLVFGVGVAGLQAIATAKRLGA-VVMATDVRAATKEQVESLGGKF-----ITVDDEAMKTAETAGGYAKEMGEEFR 101 (183)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCSTTHHHHHHTTCEE-----CCC-----------------------
T ss_pred CCcEEEEEcCcHHHHHHHHHHHHcCC-EEEEEeccHHHHHHHHHhhcce-----EEEeccccccccccccchhhcCHHHH
Confidence 568999999998 6666666654 88 89999999 7666655433211 11100 0111110
Q ss_pred --------C-CCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 141 --------L-PEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 141 --------~-~~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
. -...|+||+-.+- .....+..+-+.+-+.+|||.+++--
T Consensus 102 ~~~~~~l~~~l~~aDlVI~tali---pG~~aP~lit~~mv~~Mk~GSVIVDv 150 (183)
T d1l7da1 102 KKQAEAVLKELVKTDIAITTALI---PGKPAPVLITEEMVTKMKPGSVIIDL 150 (183)
T ss_dssp CCHHHHHHHHHTTCSEEEECCCC---TTSCCCCCSCHHHHTTSCTTCEEEET
T ss_pred HHHHHHHHHHHHhhhhheeeeec---CCcccceeehHHHHHhcCCCcEEEEE
Confidence 0 1468999984432 22222222345566789999988843
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=94.86 E-value=0.0092 Score=48.27 Aligned_cols=95 Identities=23% Similarity=0.220 Sum_probs=59.5
Q ss_pred HHhcCCCCCCCEEEEECCcc--cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccC------
Q 016351 70 IFQNKHHFQGKTVLDVGTGS--GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDI------ 139 (391)
Q Consensus 70 i~~~~~~~~~~~VLDlGcGt--G~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~------ 139 (391)
+.+.....++++||-.|+|. |.++..+|+. |+ +|++++.+ +..+.+++ .|.. .++..+-.++
T Consensus 20 l~~~~~l~~g~~Vlv~ga~g~vG~~~iqlak~~Ga-~Vi~~~~s~~k~~~~~~----lGa~---~vi~~~~~d~~~~v~~ 91 (179)
T d1qora2 20 LRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGA-KLIGTVGTAQKAQSALK----AGAW---QVINYREEDLVERLKE 91 (179)
T ss_dssp HHTTSCCCTTCEEEESSTTBHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHH----HTCS---EEEETTTSCHHHHHHH
T ss_pred HHHHhCCCCCCEEEEEccccccchHHHHHHHHhCC-eEeecccchHHHHHHHh----cCCe---EEEECCCCCHHHHHHH
Confidence 44444556789999997765 6677777776 77 79999999 66666654 3433 2333221221
Q ss_pred -CCCCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEc
Q 016351 140 -VLPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 140 -~~~~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~ 182 (391)
.-++.+|+|+.-. + .+ .+....+.|+++|.++.
T Consensus 92 ~t~g~g~d~v~d~~-g----~~-----~~~~~~~~l~~~G~~v~ 125 (179)
T d1qora2 92 ITGGKKVRVVYDSV-G----RD-----TWERSLDCLQRRGLMVS 125 (179)
T ss_dssp HTTTCCEEEEEECS-C----GG-----GHHHHHHTEEEEEEEEE
T ss_pred HhCCCCeEEEEeCc-c----HH-----HHHHHHHHHhcCCeeee
Confidence 2246789887522 1 11 24455678999998764
|
| >d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HhaI species: Haemophilus haemolyticus [TaxId: 726]
Probab=94.82 E-value=0.021 Score=50.69 Aligned_cols=68 Identities=18% Similarity=0.233 Sum_probs=53.0
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC--CcccEEEEcc
Q 016351 77 FQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP--EKVDVIISEW 152 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~--~~~D~Ivse~ 152 (391)
..+.+||||-||.|.+++.+.++|...|.++|++ .+++..+.+.. + ..++|+.++... ..+|+|+.-+
T Consensus 9 ~~~lrv~~lFsG~Gg~~~gl~~aG~~~v~a~e~d~~a~~~~~~N~~-----~---~~~~Di~~~~~~~~~~~Dll~ggp 79 (327)
T d2c7pa1 9 LTGLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMNFG-----E---KPEGDITQVNEKTIPDHDILCAGF 79 (327)
T ss_dssp TTTCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHHHHHHHHHS-----C---CCBSCGGGSCGGGSCCCSEEEEEC
T ss_pred CCCCeEEEECccccHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHCC-----C---CCcCchhcCchhhcceeeeeeccc
Confidence 3567999999999999999999999778899999 67776666652 1 125888887543 5799999744
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=94.43 E-value=0.043 Score=46.55 Aligned_cols=45 Identities=22% Similarity=0.285 Sum_probs=40.4
Q ss_pred CCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHH
Q 016351 76 HFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVK 121 (391)
Q Consensus 76 ~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~ 121 (391)
..++..|||--||+|..+.++.+.|- +.+|+|++ ..++.|+++++
T Consensus 210 s~~gd~VlDpF~GSGTT~~aa~~~~R-~~ig~El~~~y~~~a~~Rl~ 255 (256)
T d1g60a_ 210 SNPNDLVLDCFMGSGTTAIVAKKLGR-NFIGCDMNAEYVNQANFVLN 255 (256)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHH
T ss_pred CCCCCEEEECCCCchHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHc
Confidence 36789999999999999999988886 89999999 89999998875
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.04 E-value=0.028 Score=44.62 Aligned_cols=91 Identities=20% Similarity=0.160 Sum_probs=54.8
Q ss_pred CCCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC-----CCCcccE
Q 016351 76 HFQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV-----LPEKVDV 147 (391)
Q Consensus 76 ~~~~~~VLDlGcGt-G~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~-----~~~~~D~ 147 (391)
..++.+||-.|+|. |.++..+++. |+ +|++++.+ .-++.+++ .|.. .++...-.+.. .....|.
T Consensus 25 ~~~g~~vlv~G~G~iG~~a~~~a~~~g~-~v~~~~~~~~r~~~~k~----~Ga~---~~~~~~~~~~~~~~~~~~~~~~~ 96 (168)
T d1rjwa2 25 AKPGEWVAIYGIGGLGHVAVQYAKAMGL-NVVAVDIGDEKLELAKE----LGAD---LVVNPLKEDAAKFMKEKVGGVHA 96 (168)
T ss_dssp CCTTCEEEEECCSTTHHHHHHHHHHTTC-EEEEECSCHHHHHHHHH----TTCS---EEECTTTSCHHHHHHHHHSSEEE
T ss_pred CCCCCEEEEeecccchhhhhHHHhcCCC-eEeccCCCHHHhhhhhh----cCcc---eecccccchhhhhcccccCCCce
Confidence 56789999999998 7777777776 56 79999998 66655543 4543 22221111110 0123444
Q ss_pred EEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 148 IISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 148 Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
++.+..+ ...+....+.|+|+|.++..
T Consensus 97 ~v~~~~~---------~~~~~~a~~~l~~~G~i~~~ 123 (168)
T d1rjwa2 97 AVVTAVS---------KPAFQSAYNSIRRGGACVLV 123 (168)
T ss_dssp EEESSCC---------HHHHHHHHHHEEEEEEEEEC
T ss_pred EEeecCC---------HHHHHHHHHHhccCCceEec
Confidence 4432211 23456667889999998864
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Probab=93.86 E-value=0.17 Score=43.18 Aligned_cols=72 Identities=24% Similarity=0.341 Sum_probs=56.0
Q ss_pred CCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC------------
Q 016351 77 FQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV------------ 140 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~---l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~------------ 140 (391)
+++++||-.|+..|+ ++..+++.|+ +|+.++.+ +-++.+.+..+..+.. +.++..|+.+..
T Consensus 4 L~gK~alITGas~GIG~aia~~la~~G~-~V~i~~r~~~~l~~~~~~~~~~~~~--~~~~~~D~s~~~~~~~~~~~~~~~ 80 (258)
T d1ae1a_ 4 LKGTTALVTGGSKGIGYAIVEELAGLGA-RVYTCSRNEKELDECLEIWREKGLN--VEGSVCDLLSRTERDKLMQTVAHV 80 (258)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCC--EEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCC--ceEEEeecCCHHHHHHHHHHHHHH
Confidence 578999999999885 5667788898 79999999 7777777777776643 888899987742
Q ss_pred CCCcccEEEEc
Q 016351 141 LPEKVDVIISE 151 (391)
Q Consensus 141 ~~~~~D~Ivse 151 (391)
+.+..|+++..
T Consensus 81 ~~g~idilinn 91 (258)
T d1ae1a_ 81 FDGKLNILVNN 91 (258)
T ss_dssp TTSCCCEEEEC
T ss_pred hCCCcEEEecc
Confidence 23578888874
|
| >d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.PvuII N4 cytosine-specific DNA methyltransferase species: Proteus vulgaris [TaxId: 585]
Probab=93.84 E-value=0.036 Score=48.69 Aligned_cols=47 Identities=15% Similarity=0.092 Sum_probs=41.3
Q ss_pred CCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHc
Q 016351 76 HFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKAN 123 (391)
Q Consensus 76 ~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~ 123 (391)
..++..|||.-||+|..+.++.+.|- +.+|+|++ +.++.|++++..+
T Consensus 248 s~~gdiVlDpF~GSGTT~~AA~~lgR-~~Ig~El~~~y~~~a~~Rl~~~ 295 (320)
T d1booa_ 248 TEPDDLVVDIFGGSNTTGLVAERESR-KWISFEMKPEYVAASAFRFLDN 295 (320)
T ss_dssp CCTTCEEEETTCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHGGGSCS
T ss_pred ccCCCEEEecCCCCcHHHHHHHHcCC-cEEEEeCCHHHHHHHHHHHHhc
Confidence 45789999999999999999998886 79999999 8999998877654
|
| >d2uyoa1 c.66.1.57 (A:14-310) Putative methyltransferase ML2640 {Mycobacterium leprae [TaxId: 1769]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: ML2640-like domain: Putative methyltransferase ML2640 species: Mycobacterium leprae [TaxId: 1769]
Probab=93.76 E-value=0.25 Score=43.11 Aligned_cols=123 Identities=10% Similarity=0.033 Sum_probs=79.5
Q ss_pred HhHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEechHHHHHHHHHHHHcCCC--CcEEEEEccccc
Q 016351 61 VRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEATKMSDHARTLVKANNLQ--DVVEVIEGSVED 138 (391)
Q Consensus 61 ~r~~~~~~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s~~~~~a~~~~~~~~~~--~~v~~i~~d~~~ 138 (391)
.|...+.+.+.+.+.... ..|+.||||-=.....+......+++=||.-++++.-++.+..++.. ....++..|+.+
T Consensus 73 ~Rtr~~D~~~~~~~~~g~-~qvV~LGaGlDTr~~Rl~~~~~~~~~EvD~p~vi~~K~~~l~~~~~~~~~~~~~v~~Dl~~ 151 (297)
T d2uyoa1 73 VRTNFFDTYFNNAVIDGI-RQFVILASGLDSRAYRLDWPTGTTVYEIDQPKVLAYKSTTLAEHGVTPTADRREVPIDLRQ 151 (297)
T ss_dssp HHHHHHHHHHHHHHHTTC-CEEEEETCTTCCHHHHSCCCTTCEEEEEECHHHHHHHHHHHHHTTCCCSSEEEEEECCTTS
T ss_pred HHHHHHHHHHHHHHhhCC-CeEEEeCcccCChhhhcCCCcCceEEEcCChHHHHHHHHHHHhcCCCCCceEEEecccccc
Confidence 445455555555443222 45666999976655544322222566666657888778888877653 457788888765
Q ss_pred CC--------C-CCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcccc
Q 016351 139 IV--------L-PEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 139 ~~--------~-~~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~~ 185 (391)
-. + +...-++++|.+.+++..+ ....++..+..+..||..+++...
T Consensus 152 ~~~~~L~~~g~d~~~ptl~i~EGvl~YL~~~-~~~~ll~~i~~~~~~GS~l~~d~~ 206 (297)
T d2uyoa1 152 DWPPALRSAGFDPSARTAWLAEGLLMYLPAT-AQDGLFTEIGGLSAVGSRIAVETS 206 (297)
T ss_dssp CHHHHHHHTTCCTTSCEEEEECSCGGGSCHH-HHHHHHHHHHHTCCTTCEEEEECC
T ss_pred hHHHHHHhcCCCCCCCEEEEEccccccCCHH-HHHHHHHHHHHhCCCCCEEEEEec
Confidence 20 1 2455678889877776655 578899999999999998887643
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Probab=93.68 E-value=0.16 Score=43.39 Aligned_cols=73 Identities=22% Similarity=0.288 Sum_probs=55.9
Q ss_pred CCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC------------
Q 016351 77 FQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV------------ 140 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~---l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~------------ 140 (391)
++++++|--|+++|+ ++..+++.|+ +|+.+|.+ +.++.+.+.+...+. ++.++..|+.+..
T Consensus 6 L~GK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~~~~~g~--~~~~~~~Dv~~~~~v~~~~~~~~~~ 82 (259)
T d2ae2a_ 6 LEGCTALVTGGSRGIGYGIVEELASLGA-SVYTCSRNQKELNDCLTQWRSKGF--KVEASVCDLSSRSERQELMNTVANH 82 (259)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC--EEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCC--CceEEEeeCCCHHHHHHHHHHHHHH
Confidence 578999999999885 5677888898 79999999 777777666666553 4888999987631
Q ss_pred CCCcccEEEEcc
Q 016351 141 LPEKVDVIISEW 152 (391)
Q Consensus 141 ~~~~~D~Ivse~ 152 (391)
+..+.|++|.+.
T Consensus 83 ~~~~idilvnnA 94 (259)
T d2ae2a_ 83 FHGKLNILVNNA 94 (259)
T ss_dssp TTTCCCEEEECC
T ss_pred hCCCceEEEECC
Confidence 224799999753
|
| >d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Levodione reductase species: Corynebacterium aquaticum [TaxId: 144185]
Probab=93.55 E-value=0.14 Score=43.78 Aligned_cols=75 Identities=24% Similarity=0.282 Sum_probs=57.9
Q ss_pred CCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC-----------
Q 016351 77 FQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL----------- 141 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~---l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~----------- 141 (391)
++++++|--|+++|+ ++..+++.|+ +|+.+|.+ +.++.+.+.+...+...++..+.+|+.+..-
T Consensus 2 l~gK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~ 80 (258)
T d1iy8a_ 2 FTDRVVLITGGGSGLGRATAVRLAAEGA-KLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTER 80 (258)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhhCCCCeEEEEeccCCCHHHHHHHHHHHHHH
Confidence 578999999999985 5778888898 79999999 7777766666555555568899999877420
Q ss_pred CCcccEEEEcc
Q 016351 142 PEKVDVIISEW 152 (391)
Q Consensus 142 ~~~~D~Ivse~ 152 (391)
-++.|++|.+.
T Consensus 81 ~G~iDiLVnnA 91 (258)
T d1iy8a_ 81 FGRIDGFFNNA 91 (258)
T ss_dssp HSCCSEEEECC
T ss_pred hCCCCEEEECC
Confidence 16799999853
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.48 E-value=0.0084 Score=48.67 Aligned_cols=96 Identities=20% Similarity=0.234 Sum_probs=58.2
Q ss_pred HHhcCCCCCCCEEEEECC-c-ccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccC------
Q 016351 70 IFQNKHHFQGKTVLDVGT-G-SGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDI------ 139 (391)
Q Consensus 70 i~~~~~~~~~~~VLDlGc-G-tG~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~------ 139 (391)
+.+.....++.+||-.|+ | .|.+++.+|+. |+ +|+++..+ +-.+.++ +.|.. .++..+-.++
T Consensus 17 l~~~~~~~~g~~VlI~ga~g~vG~~~iqla~~~g~-~vi~~~~~~~~~~~l~----~~Ga~---~vi~~~~~~~~~~v~~ 88 (183)
T d1pqwa_ 17 LCEVGRLSPGERVLIHSATGGVGMAAVSIAKMIGA-RIYTTAGSDAKREMLS----RLGVE---YVGDSRSVDFADEILE 88 (183)
T ss_dssp HHTTSCCCTTCEEEETTTTSHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHH----TTCCS---EEEETTCSTHHHHHHH
T ss_pred HHHHhCCCCCCEEEEECCCCCcccccchhhccccc-cceeeecccccccccc----ccccc---ccccCCccCHHHHHHH
Confidence 444455567899999874 3 36777777776 77 68877766 5555444 45553 2232221121
Q ss_pred -CCCCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 140 -VLPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 140 -~~~~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
..+..+|+|+.-. + . ..++.+.+.|+++|+++..
T Consensus 89 ~t~~~g~d~v~d~~-g----~-----~~~~~~~~~l~~~G~~v~~ 123 (183)
T d1pqwa_ 89 LTDGYGVDVVLNSL-A----G-----EAIQRGVQILAPGGRFIEL 123 (183)
T ss_dssp HTTTCCEEEEEECC-C----T-----HHHHHHHHTEEEEEEEEEC
T ss_pred HhCCCCEEEEEecc-c----c-----hHHHHHHHHhcCCCEEEEE
Confidence 1236799999622 1 1 2355566889999998853
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=93.40 E-value=0.086 Score=45.17 Aligned_cols=47 Identities=26% Similarity=0.286 Sum_probs=41.8
Q ss_pred CCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHc
Q 016351 76 HFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMSDHARTLVKAN 123 (391)
Q Consensus 76 ~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~ 123 (391)
..++..|||--||+|.-+.++.+.|- +.+|+|++ ...+.|+++++..
T Consensus 205 s~~gdiVLDpF~GSGTT~~Aa~~lgR-~~ig~El~~~y~~~a~~Ri~~~ 252 (279)
T d1eg2a_ 205 SHPGSTVLDFFAGSGVTARVAIQEGR-NSICTDAAPVFKEYYQKQLTFL 252 (279)
T ss_dssp SCTTCEEEETTCTTCHHHHHHHHHTC-EEEEEESSTHHHHHHHHHHHHC
T ss_pred cCCCCEEEecCCCCcHHHHHHHHhCC-eEEEEeCCHHHHHHHHHHHHHh
Confidence 35889999999999999999998876 89999999 8899999888764
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Probab=93.35 E-value=0.15 Score=43.49 Aligned_cols=73 Identities=21% Similarity=0.328 Sum_probs=57.2
Q ss_pred CCCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC---------C-
Q 016351 76 HFQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV---------L- 141 (391)
Q Consensus 76 ~~~~~~VLDlGcGtG~---l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~---------~- 141 (391)
.++++++|--|+++|+ ++..+++.|+ +|+.+|.+ +.++.+.+.++..+. ++..+..|+.+.. .
T Consensus 2 rL~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~~~~~g~--~~~~~~~Dv~~~~~v~~~~~~~~~ 78 (260)
T d1zema1 2 KFNGKVCLVTGAGGNIGLATALRLAEEGT-AIALLDMNREALEKAEASVREKGV--EARSYVCDVTSEEAVIGTVDSVVR 78 (260)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTTS--CEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCC--cEEEEEccCCCHHHHHHHHHHHHH
Confidence 3688999999999885 5677888898 79999999 778777777776654 4889999987642 0
Q ss_pred -CCcccEEEEc
Q 016351 142 -PEKVDVIISE 151 (391)
Q Consensus 142 -~~~~D~Ivse 151 (391)
-++.|++|.+
T Consensus 79 ~~g~iDilVnn 89 (260)
T d1zema1 79 DFGKIDFLFNN 89 (260)
T ss_dssp HHSCCCEEEEC
T ss_pred HhCCCCeehhh
Confidence 1579999974
|
| >d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=93.32 E-value=0.13 Score=44.04 Aligned_cols=73 Identities=19% Similarity=0.147 Sum_probs=56.1
Q ss_pred CCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC------------
Q 016351 77 FQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV------------ 140 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~---l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~------------ 140 (391)
++++++|--|+++|+ ++..+++.|+ +|+.++.+ +-++.+.+.+...+. ++..+..|+.+..
T Consensus 6 LkgK~alVTGas~GIG~aiA~~la~~Ga-~V~~~~r~~~~l~~~~~~~~~~~~--~~~~~~~Dv~~~~~v~~~~~~~~~~ 82 (259)
T d1xq1a_ 6 LKAKTVLVTGGTKGIGHAIVEEFAGFGA-VIHTCARNEYELNECLSKWQKKGF--QVTGSVCDASLRPEREKLMQTVSSM 82 (259)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCC--ceEEEeccCCCHHHHHHHHHHHHHH
Confidence 578999999999986 5677888898 79999999 777766666666553 3899999987641
Q ss_pred CCCcccEEEEcc
Q 016351 141 LPEKVDVIISEW 152 (391)
Q Consensus 141 ~~~~~D~Ivse~ 152 (391)
+.++.|++|.+.
T Consensus 83 ~~g~idilvnnA 94 (259)
T d1xq1a_ 83 FGGKLDILINNL 94 (259)
T ss_dssp HTTCCSEEEEEC
T ss_pred hCCCcccccccc
Confidence 235789999853
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=93.10 E-value=0.016 Score=46.54 Aligned_cols=92 Identities=20% Similarity=0.175 Sum_probs=56.9
Q ss_pred CCCCCCCEEEEECC-cc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEccc-ccCCCCCcccEE
Q 016351 74 KHHFQGKTVLDVGT-GS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSV-EDIVLPEKVDVI 148 (391)
Q Consensus 74 ~~~~~~~~VLDlGc-Gt-G~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~-~~~~~~~~~D~I 148 (391)
....++++||-.|+ |. |.+++.++++ |+ +|++++.+ ..++.++ +.|....+. ..+. ......+.+|+|
T Consensus 23 ~~~~~g~~VlI~ga~G~vG~~aiqlak~~G~-~vi~~~~~~~~~~~~~----~lGa~~~i~--~~~~~~~~~~~~g~D~v 95 (171)
T d1iz0a2 23 AQARPGEKVLVQAAAGALGTAAVQVARAMGL-RVLAAASRPEKLALPL----ALGAEEAAT--YAEVPERAKAWGGLDLV 95 (171)
T ss_dssp TTCCTTCEEEESSTTBHHHHHHHHHHHHTTC-EEEEEESSGGGSHHHH----HTTCSEEEE--GGGHHHHHHHTTSEEEE
T ss_pred hCCCCCCEEEEEeccccchhhhhhhhccccc-cccccccccccccccc----ccccceeee--hhhhhhhhhcccccccc
Confidence 34568899999885 43 6777778877 77 79999988 5555554 345442221 1111 112223679998
Q ss_pred EEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 149 ISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 149 vse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
+- ..+ + . +....+.|+++|.++..
T Consensus 96 ~d-~~G-----~-~----~~~~~~~l~~~G~~v~~ 119 (171)
T d1iz0a2 96 LE-VRG-----K-E----VEESLGLLAHGGRLVYI 119 (171)
T ss_dssp EE-CSC-----T-T----HHHHHTTEEEEEEEEEC
T ss_pred cc-ccc-----h-h----HHHHHHHHhcCCcEEEE
Confidence 85 222 1 2 34456789999998854
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=93.05 E-value=0.1 Score=41.52 Aligned_cols=96 Identities=17% Similarity=0.110 Sum_probs=58.5
Q ss_pred HHhcCCCCCCCEEEEECCcc-cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccc-cC------
Q 016351 70 IFQNKHHFQGKTVLDVGTGS-GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVE-DI------ 139 (391)
Q Consensus 70 i~~~~~~~~~~~VLDlGcGt-G~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~-~~------ 139 (391)
+.+.....++.+||-.|||. |.+++.++++ |++.|+++|.+ ..++.+++ .|.. .++..+-. +.
T Consensus 20 l~~~~~~~~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~----lGa~---~~i~~~~~~~~~~~~~~ 92 (176)
T d2fzwa2 20 AVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKE----FGAT---ECINPQDFSKPIQEVLI 92 (176)
T ss_dssp HHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHH----HTCS---EEECGGGCSSCHHHHHH
T ss_pred HHHhhCCCCCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHH----hCCc---EEEeCCchhhHHHHHHH
Confidence 44444567889999999984 4556666665 88899999998 66666654 3432 23322111 10
Q ss_pred -CCCCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEE
Q 016351 140 -VLPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMY 181 (391)
Q Consensus 140 -~~~~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii 181 (391)
..++.+|+|+-.. + . ...+.....++++||.++
T Consensus 93 ~~~~~g~D~vid~~-G----~----~~~~~~~~~~~~~g~~~~ 126 (176)
T d2fzwa2 93 EMTDGGVDYSFECI-G----N----VKVMRAALEACHKGWGVS 126 (176)
T ss_dssp HHTTSCBSEEEECS-C----C----HHHHHHHHHTBCTTTCEE
T ss_pred HHcCCCCcEeeecC-C----C----HHHHHHHHHhhcCCceeE
Confidence 1235799998521 1 1 234566677888886554
|
| >d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNMT2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.04 E-value=0.038 Score=49.16 Aligned_cols=68 Identities=16% Similarity=0.171 Sum_probs=50.3
Q ss_pred CCEEEEECCcccHHHHHHHHcCCC--eEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC----CcccEEEEc
Q 016351 79 GKTVLDVGTGSGILAIWSAQAGAR--KVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP----EKVDVIISE 151 (391)
Q Consensus 79 ~~~VLDlGcGtG~l~~~~a~~g~~--~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~----~~~D~Ivse 151 (391)
..+|+|+-||.|.+++.+.++|.. -|.++|++ .+++..+.+. ++ ..++.+|+.++... ..+|+++.-
T Consensus 2 p~kv~~lF~G~Gg~~~gl~~aG~~~~~~~a~E~~~~a~~~~~~n~-----~~-~~~~~~di~~~~~~~~~~~~~Dll~gg 75 (343)
T d1g55a_ 2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNF-----PH-TQLLAKTIEGITLEEFDRLSFDMILMS 75 (343)
T ss_dssp CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHC-----TT-SCEECSCGGGCCHHHHHHHCCSEEEEC
T ss_pred CCEEEEcCcCccHHHHHHHHcCCCCeEEEEEECCHHHHHHHHHHC-----CC-CCcccCchhhCCHhHcCCCCccEEEee
Confidence 357999999999999888888864 37899999 6665555443 12 56778898887532 378999974
Q ss_pred c
Q 016351 152 W 152 (391)
Q Consensus 152 ~ 152 (391)
+
T Consensus 76 p 76 (343)
T d1g55a_ 76 P 76 (343)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=93.03 E-value=0.17 Score=39.69 Aligned_cols=86 Identities=15% Similarity=0.088 Sum_probs=55.3
Q ss_pred EEEEECCcc--cHHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEccccccc
Q 016351 81 TVLDVGTGS--GILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMGYFL 157 (391)
Q Consensus 81 ~VLDlGcGt--G~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~~D~Ivse~~~~~~ 157 (391)
+|.-||+|. +.++..+.+.|. +|+++|.+ +.++.|+ +.+.- .....+...+ ...|+|+.-.
T Consensus 2 kI~iIG~G~mG~~lA~~l~~~g~-~V~~~d~~~~~~~~a~----~~~~~---~~~~~~~~~~---~~~DiIilav----- 65 (165)
T d2f1ka2 2 KIGVVGLGLIGASLAGDLRRRGH-YLIGVSRQQSTCEKAV----ERQLV---DEAGQDLSLL---QTAKIIFLCT----- 65 (165)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHH----HTTSC---SEEESCGGGG---TTCSEEEECS-----
T ss_pred EEEEEeecHHHHHHHHHHHHCCC-EEEEEECCchHHHHHH----Hhhcc---ceeeeecccc---cccccccccC-----
Confidence 577889985 346667777787 79999999 6555543 34432 2222233222 6789988522
Q ss_pred cCcchHHHHHHHHhccccCCeEEEcc
Q 016351 158 LRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 158 ~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
. ......+++++...|+++.+++-.
T Consensus 66 p-~~~~~~vl~~l~~~l~~~~iv~~~ 90 (165)
T d2f1ka2 66 P-IQLILPTLEKLIPHLSPTAIVTDV 90 (165)
T ss_dssp C-HHHHHHHHHHHGGGSCTTCEEEEC
T ss_pred c-Hhhhhhhhhhhhhhcccccceeec
Confidence 1 124567888888889999877644
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=92.98 E-value=0.031 Score=45.26 Aligned_cols=97 Identities=14% Similarity=0.136 Sum_probs=61.5
Q ss_pred HHHhcCCCCCCCEEEEECCcc--cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccC-----
Q 016351 69 SIFQNKHHFQGKTVLDVGTGS--GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDI----- 139 (391)
Q Consensus 69 ~i~~~~~~~~~~~VLDlGcGt--G~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~----- 139 (391)
++.+..+..++++||-.|++. |..++.+++. |+ +|+++..+ +..+.++ ..|.. .++..+-.+.
T Consensus 20 al~~~~~v~~G~~VlV~ga~ggvG~~aiqlak~~Ga-~vi~~~~~~~~~~~~~----~~Ga~---~vi~~~~~~~~~~~~ 91 (182)
T d1v3va2 20 GLLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGC-KVVGAAGSDEKIAYLK----QIGFD---AAFNYKTVNSLEEAL 91 (182)
T ss_dssp HHHTTTCCCSSCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHH----HTTCS---EEEETTSCSCHHHHH
T ss_pred HHHHHhCCCCCCEEEEEeCCCchhHHHHHHHHccCC-EEEEeCCCHHHHHHHH----hhhhh---hhcccccccHHHHHH
Confidence 344445567889999888866 4566777776 66 89999988 6555544 34543 2233222221
Q ss_pred --CCCCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 140 --VLPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 140 --~~~~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
..++.+|+|+-- ++ ...++...++|+++|.++..
T Consensus 92 ~~~~~~Gvd~v~D~-vG---------~~~~~~~~~~l~~~G~~v~~ 127 (182)
T d1v3va2 92 KKASPDGYDCYFDN-VG---------GEFLNTVLSQMKDFGKIAIC 127 (182)
T ss_dssp HHHCTTCEEEEEES-SC---------HHHHHHHGGGEEEEEEEEEC
T ss_pred HHhhcCCCceeEEe-cC---------chhhhhhhhhccCCCeEEee
Confidence 123679998841 11 13467788999999998854
|
| >d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein R05D8.7 species: Caenorhabditis elegans [TaxId: 6239]
Probab=92.74 E-value=0.15 Score=43.87 Aligned_cols=75 Identities=27% Similarity=0.363 Sum_probs=58.7
Q ss_pred CCCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCC-CcEEEEEcccccCCC---------
Q 016351 76 HFQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQ-DVVEVIEGSVEDIVL--------- 141 (391)
Q Consensus 76 ~~~~~~VLDlGcGtG~---l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~-~~v~~i~~d~~~~~~--------- 141 (391)
.++++++|-.|+++|+ ++..+++.|+ +|+.++.+ +.++.+.+.++..+.. .++..+.+|+.+..-
T Consensus 2 rL~gK~alVTGas~GIG~aia~~la~~Ga-~V~l~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~ 80 (272)
T d1xkqa_ 2 RFSNKTVIITGSSNGIGRTTAILFAQEGA-NVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTL 80 (272)
T ss_dssp TTTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCcCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCCCceEEEEccCCCHHHHHHHHHHHH
Confidence 4688999999999885 5677888898 79999999 7788877777776653 358999999877420
Q ss_pred --CCcccEEEEc
Q 016351 142 --PEKVDVIISE 151 (391)
Q Consensus 142 --~~~~D~Ivse 151 (391)
-++.|++|.+
T Consensus 81 ~~~g~iDilvnn 92 (272)
T d1xkqa_ 81 KQFGKIDVLVNN 92 (272)
T ss_dssp HHHSCCCEEEEC
T ss_pred HHhCCceEEEeC
Confidence 1579999975
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.16 E-value=0.32 Score=40.96 Aligned_cols=74 Identities=18% Similarity=0.149 Sum_probs=57.3
Q ss_pred CCCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC-----------
Q 016351 76 HFQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV----------- 140 (391)
Q Consensus 76 ~~~~~~VLDlGcGtG~---l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~----------- 140 (391)
...|+++|--|+++|+ ++..+++.|+ +|+.+|.+ +.++...+.++..+ .++..+.+|+.+.+
T Consensus 4 ~l~Gkv~lITGas~GIG~~ia~~la~~G~-~V~l~~r~~~~l~~~~~~~~~~~--~~~~~~~~Dvs~~~~v~~~~~~i~~ 80 (244)
T d1yb1a_ 4 SVTGEIVLITGAGHGIGRLTAYEFAKLKS-KLVLWDINKHGLEETAAKCKGLG--AKVHTFVVDCSNREDIYSSAKKVKA 80 (244)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcC--CcEEEEEeeCCCHHHHHHHHHHHHH
Confidence 4678999999999985 5777888899 79999999 77766666666655 34899999998852
Q ss_pred CCCcccEEEEcc
Q 016351 141 LPEKVDVIISEW 152 (391)
Q Consensus 141 ~~~~~D~Ivse~ 152 (391)
.-+..|+++.+.
T Consensus 81 ~~g~idilinna 92 (244)
T d1yb1a_ 81 EIGDVSILVNNA 92 (244)
T ss_dssp HTCCCSEEEECC
T ss_pred HcCCCceeEeec
Confidence 125799988744
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=92.12 E-value=0.21 Score=39.27 Aligned_cols=88 Identities=17% Similarity=0.147 Sum_probs=53.9
Q ss_pred EEEEECCcc-c-HHHHHHHHcCC-CeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCCCcccEEEEcccccc
Q 016351 81 TVLDVGTGS-G-ILAIWSAQAGA-RKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMGYF 156 (391)
Q Consensus 81 ~VLDlGcGt-G-~l~~~~a~~g~-~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~~D~Ivse~~~~~ 156 (391)
+|+-||||. | .++..+.+.|. .+|+++|.+ +.++.|++ .+.- .....+..... ....|+|+....
T Consensus 3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~----~~~~---~~~~~~~~~~~-~~~~dlIila~p--- 71 (171)
T d2g5ca2 3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVD----LGII---DEGTTSIAKVE-DFSPDFVMLSSP--- 71 (171)
T ss_dssp EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHH----TTSC---SEEESCGGGGG-GTCCSEEEECSC---
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHH----hhcc---hhhhhhhhhhh-ccccccccccCC---
Confidence 588899986 3 45666766764 479999999 77766654 3332 22222222211 146799885221
Q ss_pred ccCcchHHHHHHHHhccccCCeEEEc
Q 016351 157 LLRESMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 157 ~~~e~~l~~~l~~~~~~L~~gG~ii~ 182 (391)
......++..+.+.++++.+++-
T Consensus 72 ---~~~~~~vl~~l~~~~~~~~ii~d 94 (171)
T d2g5ca2 72 ---VRTFREIAKKLSYILSEDATVTD 94 (171)
T ss_dssp ---HHHHHHHHHHHHHHSCTTCEEEE
T ss_pred ---chhhhhhhhhhhccccccccccc
Confidence 12345677888888888876653
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.88 E-value=0.45 Score=38.43 Aligned_cols=101 Identities=13% Similarity=0.226 Sum_probs=65.0
Q ss_pred CEEEEECCcc-c-HHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHc-------CCC--------------CcEEEEEcc
Q 016351 80 KTVLDVGTGS-G-ILAIWSAQAGARKVYAVEAT-KMSDHARTLVKAN-------NLQ--------------DVVEVIEGS 135 (391)
Q Consensus 80 ~~VLDlGcGt-G-~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~-------~~~--------------~~v~~i~~d 135 (391)
++|--||+|+ | .++..++++|. .|+.+|.+ +.++.+++.++.. +.. .++.+.. |
T Consensus 5 kkvaViGaG~mG~~iA~~~a~~G~-~V~l~D~~~~~l~~a~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~-d 82 (192)
T d1f0ya2 5 KHVTVIGGGLMGAGIAQVAAATGH-TVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATST-D 82 (192)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEES-C
T ss_pred EEEEEECcCHHHHHHHHHHHhCCC-cEEEEECChHHHHHHHhhHHHHHHHHHHhhhhccchhhHHHHHHHHhhccccc-h
Confidence 5789999997 3 45677888898 79999999 8888777765532 221 1122222 2
Q ss_pred cccCCCCCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcccceeE
Q 016351 136 VEDIVLPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHARMW 188 (391)
Q Consensus 136 ~~~~~~~~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~~~~~ 188 (391)
..+. -...|+|+-.. ......-..++..+.++++++.++.-+..++-
T Consensus 83 ~~~a--~~~ad~ViEav----~E~l~~K~~v~~~l~~~~~~~~ilasnTS~l~ 129 (192)
T d1f0ya2 83 AASV--VHSTDLVVEAI----VENLKVKNELFKRLDKFAAEHTIFASNTSSLQ 129 (192)
T ss_dssp HHHH--TTSCSEEEECC----CSCHHHHHHHHHHHTTTSCTTCEEEECCSSSC
T ss_pred hHhh--hcccceehhhc----ccchhHHHHHHHHHhhhcccCceeeccCcccc
Confidence 1110 14678888522 22223456889999999999988776555444
|
| >d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: FkbM-like domain: Methyltransferase FkbM species: Methylobacillus flagellatus [TaxId: 405]
Probab=91.86 E-value=0.43 Score=43.30 Aligned_cols=56 Identities=13% Similarity=0.175 Sum_probs=43.6
Q ss_pred CCCEEEEECCcccHHHHHHHHc--C-CCeEEEEech-HHHHHHHHHHHHcCCCC---cEEEEE
Q 016351 78 QGKTVLDVGTGSGILAIWSAQA--G-ARKVYAVEAT-KMSDHARTLVKANNLQD---VVEVIE 133 (391)
Q Consensus 78 ~~~~VLDlGcGtG~l~~~~a~~--g-~~~V~avD~s-~~~~~a~~~~~~~~~~~---~v~~i~ 133 (391)
++.+++||||-.|..+..+++. + ..+|+++|++ ...+..+++++.+...+ ++.++.
T Consensus 212 kn~vfIDVGAniG~~s~~f~~~~~~~~~kV~aFEP~p~n~~~LkkNi~~n~~~n~~~~I~~~~ 274 (395)
T d2py6a1 212 DSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTDTNFASRITVHG 274 (395)
T ss_dssp SSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTTSTTGGGEEEEC
T ss_pred CCCEEEECCcCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHHHHhcccccccceEEEEE
Confidence 5679999999999888766653 2 3589999999 88899999999887643 355544
|
| >d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein F25D1.5 species: Caenorhabditis elegans [TaxId: 6239]
Probab=91.76 E-value=0.24 Score=42.54 Aligned_cols=75 Identities=20% Similarity=0.354 Sum_probs=58.1
Q ss_pred CCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCC-CcEEEEEcccccCCC----------
Q 016351 77 FQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQ-DVVEVIEGSVEDIVL---------- 141 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~---l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~-~~v~~i~~d~~~~~~---------- 141 (391)
++++++|--|+++|+ .+..+++.|+ +|+.+|.+ +.++.+.+.+...+.. .++..+.+|+.+..-
T Consensus 2 L~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 80 (274)
T d1xhla_ 2 FSGKSVIITGSSNGIGRSAAVIFAKEGA-QVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLA 80 (274)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcCCCCcceEEEEeeCCCHHHHHHHHHHHHH
Confidence 578999999999985 5677888898 79999999 7777777777766553 468999999877520
Q ss_pred -CCcccEEEEcc
Q 016351 142 -PEKVDVIISEW 152 (391)
Q Consensus 142 -~~~~D~Ivse~ 152 (391)
-++.|++|.+.
T Consensus 81 ~~G~iDilVnnA 92 (274)
T d1xhla_ 81 KFGKIDILVNNA 92 (274)
T ss_dssp HHSCCCEEEECC
T ss_pred HcCCceEEEeec
Confidence 15789999853
|
| >d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase (5l265) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=91.65 E-value=0.25 Score=42.18 Aligned_cols=75 Identities=23% Similarity=0.293 Sum_probs=57.6
Q ss_pred CCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCC-CcEEEEEcccccCCC----------
Q 016351 77 FQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQ-DVVEVIEGSVEDIVL---------- 141 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~---l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~-~~v~~i~~d~~~~~~---------- 141 (391)
++++++|--|++.|+ ++..+++.|+ +|+.++.+ +.++.+.+.+...+.. .++.++..|+.+..-
T Consensus 3 l~gKvalVTGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~ 81 (264)
T d1spxa_ 3 FAEKVAIITGSSNGIGRATAVLFAREGA-KVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTLG 81 (264)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCcCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCcCceEEEEccCCCHHHHHHHHHHHHH
Confidence 678999999999885 4677888898 79999999 7777777777666543 459999999876420
Q ss_pred -CCcccEEEEcc
Q 016351 142 -PEKVDVIISEW 152 (391)
Q Consensus 142 -~~~~D~Ivse~ 152 (391)
-++.|++|.+.
T Consensus 82 ~~g~iDilvnnA 93 (264)
T d1spxa_ 82 KFGKLDILVNNA 93 (264)
T ss_dssp HHSCCCEEEECC
T ss_pred HhCCCCEeeccc
Confidence 15799998753
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=91.64 E-value=0.18 Score=39.94 Aligned_cols=50 Identities=22% Similarity=0.283 Sum_probs=34.9
Q ss_pred HHHhcCCCCCCCEEEEECCcccH-HHHHHH-HcCCCeEEEEech-HHHHHHHH
Q 016351 69 SIFQNKHHFQGKTVLDVGTGSGI-LAIWSA-QAGARKVYAVEAT-KMSDHART 118 (391)
Q Consensus 69 ~i~~~~~~~~~~~VLDlGcGtG~-l~~~~a-~~g~~~V~avD~s-~~~~~a~~ 118 (391)
++.+.....++.+||-+|+|.+. ++..++ ..++.+|+++|.+ .-++.|++
T Consensus 19 a~~~~a~~k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~ 71 (175)
T d1cdoa2 19 AAVNTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKV 71 (175)
T ss_dssp HHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH
T ss_pred HHHHhhCCCCCCEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHHH
Confidence 34444456788999999999844 444444 4478899999999 66666654
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=91.55 E-value=0.23 Score=42.06 Aligned_cols=74 Identities=23% Similarity=0.255 Sum_probs=55.5
Q ss_pred CCCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC-----------
Q 016351 76 HFQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV----------- 140 (391)
Q Consensus 76 ~~~~~~VLDlGcGtG~---l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~----------- 140 (391)
.++++++|--|+++|+ ++..+++.|+ +|+.++.+ +.++.+.+.++..+. ++..+..|+.+..
T Consensus 7 ~lenKvalITGas~GIG~a~a~~la~~Ga-~V~~~~r~~~~l~~~~~~l~~~g~--~~~~~~~Dvt~~~~v~~~~~~~~~ 83 (251)
T d2c07a1 7 CGENKVALVTGAGRGIGREIAKMLAKSVS-HVICISRTQKSCDSVVDEIKSFGY--ESSGYAGDVSKKEEISEVINKILT 83 (251)
T ss_dssp CCSSCEEEEESTTSHHHHHHHHHHTTTSS-EEEEEESSHHHHHHHHHHHHTTTC--CEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCC--cEEEEEccCCCHHHHHHHHHHHHH
Confidence 4678999999998874 3555666688 79999999 777777777766553 4899999987742
Q ss_pred CCCcccEEEEcc
Q 016351 141 LPEKVDVIISEW 152 (391)
Q Consensus 141 ~~~~~D~Ivse~ 152 (391)
.-++.|++|.+.
T Consensus 84 ~~g~iDilvnna 95 (251)
T d2c07a1 84 EHKNVDILVNNA 95 (251)
T ss_dssp HCSCCCEEEECC
T ss_pred hcCCceeeeecc
Confidence 116899999754
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=91.39 E-value=0.37 Score=38.07 Aligned_cols=94 Identities=15% Similarity=0.127 Sum_probs=55.3
Q ss_pred CEEEEECCccc--HHHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcC-CCC-cEE----EEEcccccCCCCCcccEEEE
Q 016351 80 KTVLDVGTGSG--ILAIWSAQAGARKVYAVEAT-KMSDHARTLVKANN-LQD-VVE----VIEGSVEDIVLPEKVDVIIS 150 (391)
Q Consensus 80 ~~VLDlGcGtG--~l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~-~~~-~v~----~i~~d~~~~~~~~~~D~Ivs 150 (391)
++|--||+|.- .++..++++|. .|+.+|.+ ..++.+++.-.... ... ... .+..|..+. -..+|+|+.
T Consensus 2 k~iaIiGaG~~G~~~A~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~--~~~aD~iii 78 (184)
T d1bg6a2 2 KTYAVLGLGNGGHAFAAYLALKGQ-SVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLA--VKDADVILI 78 (184)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHH--HTTCSEEEE
T ss_pred CEEEEECccHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhH--hcCCCEEEE
Confidence 67889999983 35667888888 79999998 65554443211000 000 001 111111111 156899886
Q ss_pred ccccccccCcchHHHHHHHHhccccCCeEEEc
Q 016351 151 EWMGYFLLRESMFDSVICARDRWLKPTGVMYP 182 (391)
Q Consensus 151 e~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~ 182 (391)
-. .......+++++..+|+++..++.
T Consensus 79 ~v------~~~~~~~~~~~i~~~l~~~~~iv~ 104 (184)
T d1bg6a2 79 VV------PAIHHASIAANIASYISEGQLIIL 104 (184)
T ss_dssp CS------CGGGHHHHHHHHGGGCCTTCEEEE
T ss_pred EE------chhHHHHHHHHhhhccCCCCEEEE
Confidence 22 112456788889999999987764
|
| >d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative zinc-binding alcohol dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.30 E-value=0.27 Score=39.53 Aligned_cols=88 Identities=16% Similarity=0.205 Sum_probs=54.5
Q ss_pred CEEEEECC--cccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccC------CCCCcccEEE
Q 016351 80 KTVLDVGT--GSGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDI------VLPEKVDVII 149 (391)
Q Consensus 80 ~~VLDlGc--GtG~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~------~~~~~~D~Iv 149 (391)
..||-.|+ |.|..++.+|+. |+..|+++..+ +.... ..+..+.. .++...-.++ ..++.+|+|+
T Consensus 32 etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~---l~~~~gad---~vi~~~~~~~~~~~~~~~~~GvDvv~ 105 (187)
T d1vj1a2 32 QTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLF---LTSELGFD---AAVNYKTGNVAEQLREACPGGVDVYF 105 (187)
T ss_dssp CEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHHH---HHHHSCCS---EEEETTSSCHHHHHHHHCTTCEEEEE
T ss_pred CEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHhh---hhhcccce---EEeeccchhHHHHHHHHhccCceEEE
Confidence 78998874 458899999985 88778887776 43222 23344543 2333221111 1236799998
Q ss_pred EccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 150 SEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 150 se~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
-. ++ ...++...+.|+++|+++..
T Consensus 106 D~-vG---------g~~~~~~~~~l~~~G~iv~~ 129 (187)
T d1vj1a2 106 DN-VG---------GDISNTVISQMNENSHIILC 129 (187)
T ss_dssp ES-SC---------HHHHHHHHTTEEEEEEEEEC
T ss_pred ec-CC---------chhHHHHhhhccccccEEEe
Confidence 42 11 12466778899999999854
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Probab=91.01 E-value=0.3 Score=41.70 Aligned_cols=73 Identities=21% Similarity=0.266 Sum_probs=53.0
Q ss_pred CCCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC-----------
Q 016351 76 HFQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV----------- 140 (391)
Q Consensus 76 ~~~~~~VLDlGcGtG~---l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~----------- 140 (391)
.++++++|--|+++|+ ++..+++.|+ +|+.+|.+ +.++.+.+.+.. .+++.++..|+.+..
T Consensus 3 rL~gKvalITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~l~~---~~~~~~~~~Dv~~~~~v~~~~~~~~~ 78 (268)
T d2bgka1 3 RLQDKVAIITGGAGGIGETTAKLFVRYGA-KVVIADIADDHGQKVCNNIGS---PDVISFVHCDVTKDEDVRNLVDTTIA 78 (268)
T ss_dssp TTTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCC---TTTEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhcC---CCceEEEEccCCCHHHHHHHHHHHHH
Confidence 3688999999999885 4566778898 79999999 666555444432 345888999987742
Q ss_pred CCCcccEEEEcc
Q 016351 141 LPEKVDVIISEW 152 (391)
Q Consensus 141 ~~~~~D~Ivse~ 152 (391)
.-+++|++|.+.
T Consensus 79 ~~g~iD~lVnnA 90 (268)
T d2bgka1 79 KHGKLDIMFGNV 90 (268)
T ss_dssp HHSCCCEEEECC
T ss_pred HcCCcceecccc
Confidence 015799999743
|
| >d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=90.98 E-value=0.2 Score=40.14 Aligned_cols=100 Identities=17% Similarity=0.161 Sum_probs=58.3
Q ss_pred HHhcCCCCCCCEEEEECCcc--cHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEccccc-C--CCC
Q 016351 70 IFQNKHHFQGKTVLDVGTGS--GILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVED-I--VLP 142 (391)
Q Consensus 70 i~~~~~~~~~~~VLDlGcGt--G~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~-~--~~~ 142 (391)
+...-...++.+||--|++. |.+++.+++. |+ +|+++-.+ +..+.+++ .|....+.. ..+..+ . .-+
T Consensus 23 L~~~g~~~~g~~VLI~gaaGGVG~~aiQlak~~Ga-~Viat~~s~~k~~~~~~----lGa~~vi~~-~~~~~~~~~~~~~ 96 (176)
T d1xa0a2 23 LEEHGLTPERGPVLVTGATGGVGSLAVSMLAKRGY-TVEASTGKAAEHDYLRV----LGAKEVLAR-EDVMAERIRPLDK 96 (176)
T ss_dssp HHHTTCCGGGCCEEESSTTSHHHHHHHHHHHHTTC-CEEEEESCTTCHHHHHH----TTCSEEEEC-C---------CCS
T ss_pred HHHhCCCCCCCEEEEEeccchHHHHHHHHHHHcCC-ceEEecCchHHHHHHHh----cccceeeec-chhHHHHHHHhhc
Confidence 33334445678899998654 5677777776 77 69998887 66666654 344322211 111111 1 123
Q ss_pred CcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcccc
Q 016351 143 EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHA 185 (391)
Q Consensus 143 ~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~~~ 185 (391)
+.+|+|+-. ++ . ..+....+.|+++|+++....
T Consensus 97 ~gvD~vid~-vg----g-----~~~~~~l~~l~~~Griv~~G~ 129 (176)
T d1xa0a2 97 QRWAAAVDP-VG----G-----RTLATVLSRMRYGGAVAVSGL 129 (176)
T ss_dssp CCEEEEEEC-ST----T-----TTHHHHHHTEEEEEEEEECSC
T ss_pred cCcCEEEEc-CC----c-----hhHHHHHHHhCCCceEEEeec
Confidence 689988852 22 1 125556688999999985543
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Probab=90.92 E-value=0.4 Score=38.61 Aligned_cols=75 Identities=16% Similarity=0.115 Sum_probs=50.4
Q ss_pred CCCCCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccC---C-CCCcc
Q 016351 74 KHHFQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDI---V-LPEKV 145 (391)
Q Consensus 74 ~~~~~~~~VLDlGcGtG~---l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~---~-~~~~~ 145 (391)
-..+++++||-.|++.|+ ++..+++.|+ +|+.++.+ +.++.+.+.+..+. .+.+...|+.+. . .-+..
T Consensus 18 ~~~l~gK~vlItGasgGIG~~ia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~d~~~~~~~~~~~~~i 93 (191)
T d1luaa1 18 GGSVKGKKAVVLAGTGPVGMRSAALLAGEGA-EVVLCGRKLDKAQAAADSVNKRF---KVNVTAAETADDASRAEAVKGA 93 (191)
T ss_dssp TSCCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHHH---TCCCEEEECCSHHHHHHHTTTC
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHHhhcc-chhhcccchHHHHHHHHHHHhcc---chhhhhhhcccHHHHHHHhcCc
Confidence 346789999999988774 5677888898 79999999 66655555554432 134445554432 1 12678
Q ss_pred cEEEEcc
Q 016351 146 DVIISEW 152 (391)
Q Consensus 146 D~Ivse~ 152 (391)
|++|...
T Consensus 94 Dilin~A 100 (191)
T d1luaa1 94 HFVFTAG 100 (191)
T ss_dssp SEEEECC
T ss_pred CeeeecC
Confidence 9999753
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=90.57 E-value=0.26 Score=39.01 Aligned_cols=50 Identities=22% Similarity=0.290 Sum_probs=34.6
Q ss_pred HHhcCCCCCCCEEEEECCccc-HHHHHHHH-cCCCeEEEEech-HHHHHHHHH
Q 016351 70 IFQNKHHFQGKTVLDVGTGSG-ILAIWSAQ-AGARKVYAVEAT-KMSDHARTL 119 (391)
Q Consensus 70 i~~~~~~~~~~~VLDlGcGtG-~l~~~~a~-~g~~~V~avD~s-~~~~~a~~~ 119 (391)
+.+.....++.+||-+|+|.+ .++..+++ .|+.+|+++|.+ .-.+.+++.
T Consensus 20 l~~~~~vk~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~ 72 (176)
T d2jhfa2 20 AVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEV 72 (176)
T ss_dssp HHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT
T ss_pred HHHhhCCCCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHh
Confidence 444445678899999999763 34444444 477899999999 666666543
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=90.51 E-value=0.5 Score=39.88 Aligned_cols=73 Identities=19% Similarity=0.263 Sum_probs=53.5
Q ss_pred CCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHH-HHHHHHHHcCCCCcEEEEEcccccCCC----------
Q 016351 77 FQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSD-HARTLVKANNLQDVVEVIEGSVEDIVL---------- 141 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~---l~~~~a~~g~~~V~avD~s-~~~~-~a~~~~~~~~~~~~v~~i~~d~~~~~~---------- 141 (391)
++++++|--|++.|+ .+..+++.|+ +|+.+|.+ +.++ .+++..+..+. ++..+..|+.+..-
T Consensus 3 l~gK~~lITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~l~~~~g~--~~~~~~~Dv~~~~~v~~~~~~~~~ 79 (251)
T d1vl8a_ 3 LRGRVALVTGGSRGLGFGIAQGLAEAGC-SVVVASRNLEEASEAAQKLTEKYGV--ETMAFRCDVSNYEEVKKLLEAVKE 79 (251)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHCC--CEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHHhCC--cEEEEEccCCCHHHHHHHHHHHHH
Confidence 578999999999885 5677888898 79999998 5544 44455555553 38889999877420
Q ss_pred -CCcccEEEEcc
Q 016351 142 -PEKVDVIISEW 152 (391)
Q Consensus 142 -~~~~D~Ivse~ 152 (391)
-+++|++|.+.
T Consensus 80 ~~g~iDiLVnnA 91 (251)
T d1vl8a_ 80 KFGKLDTVVNAA 91 (251)
T ss_dssp HHSCCCEEEECC
T ss_pred HcCCCCEEEECC
Confidence 15799999853
|
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=90.38 E-value=0.34 Score=41.03 Aligned_cols=73 Identities=23% Similarity=0.293 Sum_probs=55.3
Q ss_pred CCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC-----------
Q 016351 77 FQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL----------- 141 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~---l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~----------- 141 (391)
++++++|--|++.|+ ++..+++.|+ +|+.++.+ +.++.+.+.++..+- ++.++.+|+.+..-
T Consensus 9 L~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~~~~~~~~l~~~g~--~~~~~~~Dvs~~~~~~~~~~~~~~~ 85 (255)
T d1fmca_ 9 LDGKCAIITGAGAGIGKEIAITFATAGA-SVVVSDINADAANHVVDEIQQLGG--QAFACRCDITSEQELSALADFAISK 85 (255)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHTTTC-EEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcCC--cEEEEEccCCCHHHHHHHHHHHHHH
Confidence 578999999998875 4566777788 79999999 777777776766553 48899999877420
Q ss_pred CCcccEEEEcc
Q 016351 142 PEKVDVIISEW 152 (391)
Q Consensus 142 ~~~~D~Ivse~ 152 (391)
-++.|++|.+.
T Consensus 86 ~g~iDilvnnA 96 (255)
T d1fmca_ 86 LGKVDILVNNA 96 (255)
T ss_dssp HSSCCEEEECC
T ss_pred cCCCCEeeeCC
Confidence 15799998753
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.26 E-value=0.36 Score=40.86 Aligned_cols=74 Identities=22% Similarity=0.239 Sum_probs=54.0
Q ss_pred CCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC-----------C
Q 016351 78 QGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL-----------P 142 (391)
Q Consensus 78 ~~~~VLDlGcGtG~---l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~-----------~ 142 (391)
.++++|--|+++|+ ++..+++.|+ +|+.+|.+ +.++.+.+.+....-..++.++..|+.+..- -
T Consensus 2 ~GKvalITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 80 (254)
T d2gdza1 2 NGKVALVTGAAQGIGRAFAEALLLKGA-KVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDHF 80 (254)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHhcCCCcEEEEEeecCCHHHHHHHHHHHHHHc
Confidence 57899999999885 4666778898 79999999 6666655555443333468999999877420 1
Q ss_pred CcccEEEEcc
Q 016351 143 EKVDVIISEW 152 (391)
Q Consensus 143 ~~~D~Ivse~ 152 (391)
+++|++|.+.
T Consensus 81 G~iDilVnnA 90 (254)
T d2gdza1 81 GRLDILVNNA 90 (254)
T ss_dssp SCCCEEEECC
T ss_pred CCcCeecccc
Confidence 5799999854
|
| >d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Mannitol dehydrogenase species: Mushroom (Agaricus bisporus) [TaxId: 5341]
Probab=90.04 E-value=0.37 Score=40.91 Aligned_cols=74 Identities=19% Similarity=0.196 Sum_probs=54.4
Q ss_pred CCCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-H-HHHHHHHHHHHcCCCCcEEEEEcccccCC----------
Q 016351 76 HFQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-K-MSDHARTLVKANNLQDVVEVIEGSVEDIV---------- 140 (391)
Q Consensus 76 ~~~~~~VLDlGcGtG~---l~~~~a~~g~~~V~avD~s-~-~~~~a~~~~~~~~~~~~v~~i~~d~~~~~---------- 140 (391)
.++++++|--|++.|+ ++..+++.|+ +|+.++.+ + ..+.+++..+..+. ++.++++|+.+..
T Consensus 6 ~l~gK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~~~~~~g~--~~~~~~~Dv~~~~~v~~~~~~~~ 82 (260)
T d1h5qa_ 6 SFVNKTIIVTGGNRGIGLAFTRAVAAAGA-NVAVIYRSAADAVEVTEKVGKEFGV--KTKAYQCDVSNTDIVTKTIQQID 82 (260)
T ss_dssp CCTTEEEEEETTTSHHHHHHHHHHHHTTE-EEEEEESSCTTHHHHHHHHHHHHTC--CEEEEECCTTCHHHHHHHHHHHH
T ss_pred cCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHHhCC--ceEEEEccCCCHHHHHHHHHHHH
Confidence 3578999999998875 5677888898 79999998 4 44555555555553 3889999987742
Q ss_pred -CCCcccEEEEcc
Q 016351 141 -LPEKVDVIISEW 152 (391)
Q Consensus 141 -~~~~~D~Ivse~ 152 (391)
.-++.|++|.+.
T Consensus 83 ~~~g~iDilVnnA 95 (260)
T d1h5qa_ 83 ADLGPISGLIANA 95 (260)
T ss_dssp HHSCSEEEEEECC
T ss_pred HHhCCCcEecccc
Confidence 116899998754
|
| >d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Streptomyces coelicolor [TaxId: 1902]
Probab=89.37 E-value=0.72 Score=38.87 Aligned_cols=71 Identities=17% Similarity=0.204 Sum_probs=54.1
Q ss_pred CCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC-----------CCC
Q 016351 79 GKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV-----------LPE 143 (391)
Q Consensus 79 ~~~VLDlGcGtG~---l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~-----------~~~ 143 (391)
++++|--|++.|+ ++..+++.|+ +|+.++.+ +.++.+.+.++..+. ++.++.+|+.+.. .-+
T Consensus 2 gKValITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~l~~~~~~l~~~g~--~~~~~~~Dvs~~~~v~~~~~~~~~~~g 78 (257)
T d2rhca1 2 SEVALVTGATSGIGLEIARRLGKEGL-RVFVCARGEEGLRTTLKELREAGV--EADGRTCDVRSVPEIEALVAAVVERYG 78 (257)
T ss_dssp CCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCC--cEEEEEeecCCHHHHHHHHHHHHHHhC
Confidence 5788999998885 5677888898 79999999 777777666766654 4899999987752 116
Q ss_pred cccEEEEcc
Q 016351 144 KVDVIISEW 152 (391)
Q Consensus 144 ~~D~Ivse~ 152 (391)
+.|++|.+.
T Consensus 79 ~iDilVnnA 87 (257)
T d2rhca1 79 PVDVLVNNA 87 (257)
T ss_dssp SCSEEEECC
T ss_pred CCCEEEecc
Confidence 799999753
|
| >d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.21 E-value=0.77 Score=39.03 Aligned_cols=102 Identities=17% Similarity=0.188 Sum_probs=65.0
Q ss_pred CCEE-EEECCcccH---HHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC-----------
Q 016351 79 GKTV-LDVGTGSGI---LAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL----------- 141 (391)
Q Consensus 79 ~~~V-LDlGcGtG~---l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~----------- 141 (391)
+++| |-=|+++|+ ++..+++. |+ +|+.++.+ +.++.+.+.++..+.. +.++..|+.+..-
T Consensus 2 g~rVAlVTGas~GIG~a~A~~la~~~g~-~Vi~~~r~~~~~~~~~~~l~~~~~~--~~~~~~Dvs~~~sv~~~~~~~~~~ 78 (275)
T d1wmaa1 2 GIHVALVTGGNKGIGLAIVRDLCRLFSG-DVVLTARDVTRGQAAVQQLQAEGLS--PRFHQLDIDDLQSIRALRDFLRKE 78 (275)
T ss_dssp CCCEEEESSCSSHHHHHHHHHHHHHSSS-EEEEEESSHHHHHHHHHHHHHTTCC--CEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCHHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHhcCCc--EEEEEEecCCHHHHHHHHHHHHHh
Confidence 4455 666888875 34556766 55 89999999 7777777777766543 8899999877521
Q ss_pred CCcccEEEEcc-ccccccCcc----hH-----------HHHHHHHhccccCCeEEEcc
Q 016351 142 PEKVDVIISEW-MGYFLLRES----MF-----------DSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 142 ~~~~D~Ivse~-~~~~~~~e~----~l-----------~~~l~~~~~~L~~gG~ii~~ 183 (391)
-+++|++|.+. +......+. .+ -.+.+.+..+|+++|.++..
T Consensus 79 ~g~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~g~ivni 136 (275)
T d1wmaa1 79 YGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNV 136 (275)
T ss_dssp HSSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred cCCcEEEEEcCCcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccc
Confidence 16899999864 111111110 11 12345556778888987643
|
| >d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR) species: Human (Homo sapiens), [TaxId: 9606]
Probab=88.95 E-value=1 Score=38.51 Aligned_cols=74 Identities=20% Similarity=0.348 Sum_probs=53.2
Q ss_pred CCCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHH-HHHHHHHHcCCCCcEEEEEcccccCC----------
Q 016351 76 HFQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSD-HARTLVKANNLQDVVEVIEGSVEDIV---------- 140 (391)
Q Consensus 76 ~~~~~~VLDlGcGtG~---l~~~~a~~g~~~V~avD~s-~~~~-~a~~~~~~~~~~~~v~~i~~d~~~~~---------- 140 (391)
.++++++|--|+..|+ ++..+++.|+ +|+.+|.+ ..++ .+++..+..+ .++.++..|+.+..
T Consensus 22 ~l~gK~alITGas~GIG~aiA~~la~~Ga-~Vii~~r~~~~l~~~~~~l~~~~g--~~~~~~~~D~~~~~~v~~~~~~~~ 98 (294)
T d1w6ua_ 22 SFQGKVAFITGGGTGLGKGMTTLLSSLGA-QCVIASRKMDVLKATAEQISSQTG--NKVHAIQCDVRDPDMVQNTVSELI 98 (294)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHS--SCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHhcC--CceEEEEecccChHHHHHHhhhhh
Confidence 4678999999998884 5666777898 79999998 5554 4444545544 34889999987742
Q ss_pred -CCCcccEEEEcc
Q 016351 141 -LPEKVDVIISEW 152 (391)
Q Consensus 141 -~~~~~D~Ivse~ 152 (391)
..+..|+++...
T Consensus 99 ~~~g~iDilvnnA 111 (294)
T d1w6ua_ 99 KVAGHPNIVINNA 111 (294)
T ss_dssp HHTCSCSEEEECC
T ss_pred hhccccchhhhhh
Confidence 126789998743
|
| >d1rjda_ c.66.1.37 (A:) Leucine carboxy methyltransferase Ppm1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Leucine carboxy methyltransferase Ppm1 domain: Leucine carboxy methyltransferase Ppm1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.93 E-value=0.74 Score=40.48 Aligned_cols=118 Identities=14% Similarity=0.133 Sum_probs=71.8
Q ss_pred HhHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCeEEEEech--HHHHHHHHHHHHcC--------------
Q 016351 61 VRMDAYFNSIFQNKHHFQGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT--KMSDHARTLVKANN-------------- 124 (391)
Q Consensus 61 ~r~~~~~~~i~~~~~~~~~~~VLDlGcGtG~l~~~~a~~g~~~V~avD~s--~~~~~a~~~~~~~~-------------- 124 (391)
.|...+...+.+.+...+...|+.||||.=.....+..... ++.-+|++ ++++.=++.++.+.
T Consensus 79 ~Rt~~id~~v~~Fl~~~~~~QVV~LGaG~DTr~~Rl~~~~~-~~~~~EvD~p~vi~~K~~~i~~~~~l~~~l~~~~~~~~ 157 (328)
T d1rjda_ 79 LRTVGIDAAILEFLVANEKVQVVNLGCGSDLRMLPLLQMFP-HLAYVDIDYNESVELKNSILRESEILRISLGLSKEDTA 157 (328)
T ss_dssp HHHHHHHHHHHHHHHHCSSEEEEEETCTTCCTHHHHHHHCT-TEEEEEEECHHHHHHHHHHHHHSHHHHHHHTCCSSCCC
T ss_pred HHHHHHHHHHHHHHHHCCCcEEEEeCCccchHHHHhhccCC-CcEEEECCcHHHHHHHHHHHHhchhhhhhccccccccc
Confidence 56666666666555445567899999999777766654433 45566665 44443333333211
Q ss_pred ------CCCcEEEEEcccccCC---------C-CCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEE
Q 016351 125 ------LQDVVEVIEGSVEDIV---------L-PEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMY 181 (391)
Q Consensus 125 ------~~~~v~~i~~d~~~~~---------~-~~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii 181 (391)
-.++..++..|++++. + +...-++++|.+...+..+ ....+++.+.+.... +.+|
T Consensus 158 ~~~~~~~s~~y~lv~~DL~d~~~~~~l~~~~~d~~~PTl~iaE~vl~Yl~~~-~~~~li~~~~~~f~~-~~~i 228 (328)
T d1rjda_ 158 KSPFLIDQGRYKLAACDLNDITETTRLLDVCTKREIPTIVISECLLCYMHNN-ESQLLINTIMSKFSH-GLWI 228 (328)
T ss_dssp CTTEEEECSSEEEEECCTTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHH-HHHHHHHHHHHHCSS-EEEE
T ss_pred cccccCCCCCeEEEecCCCCcHhhHHHHHccCCCCCCeEEEEeeehhcCCHH-HHHHHHHHHHHhCCC-ceEE
Confidence 1245788888887752 1 2345588899877766554 456778877666544 4444
|
| >d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Peroxisomal trans 2-enoyl CoA reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.89 E-value=0.88 Score=39.32 Aligned_cols=76 Identities=18% Similarity=0.193 Sum_probs=54.9
Q ss_pred CCCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcC---CCCcEEEEEcccccCCC-------
Q 016351 76 HFQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANN---LQDVVEVIEGSVEDIVL------- 141 (391)
Q Consensus 76 ~~~~~~VLDlGcGtG~---l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~---~~~~v~~i~~d~~~~~~------- 141 (391)
.++++++|--|+++|+ ++..+++.|+ +|+.++.+ +.++.+.+.+.... ...++..+.+|+.+..-
T Consensus 9 ~L~gKvalITGas~GIG~aia~~la~~Ga-~Vvi~~r~~~~l~~~~~el~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~ 87 (297)
T d1yxma1 9 LLQGQVAIVTGGATGIGKAIVKELLELGS-NVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVKS 87 (297)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhhhccccCceEEEEeccCCCHHHHHHHHHH
Confidence 4689999999999985 4566778898 79999999 66665555444321 23458899999877520
Q ss_pred ----CCcccEEEEcc
Q 016351 142 ----PEKVDVIISEW 152 (391)
Q Consensus 142 ----~~~~D~Ivse~ 152 (391)
-++.|++|.+.
T Consensus 88 ~~~~~G~iDiLVnnA 102 (297)
T d1yxma1 88 TLDTFGKINFLVNNG 102 (297)
T ss_dssp HHHHHSCCCEEEECC
T ss_pred HHHHhCCeEEEEeec
Confidence 15799999754
|
| >d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: 2,4-dienoyl-CoA reductase species: Yeast (Candida tropicalis) [TaxId: 5482]
Probab=88.82 E-value=0.44 Score=38.19 Aligned_cols=103 Identities=14% Similarity=0.088 Sum_probs=57.3
Q ss_pred HHhcCCCCCCCEEEEECCc---ccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC----
Q 016351 70 IFQNKHHFQGKTVLDVGTG---SGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV---- 140 (391)
Q Consensus 70 i~~~~~~~~~~~VLDlGcG---tG~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~---- 140 (391)
+.......++..||-+.+| .|..++.+|++ |+ +|+++=.+ +..+...+.+++.|....|..-..+..++.
T Consensus 20 l~~~~~~~~g~~vli~~ga~g~vG~~aiqlAk~~Ga-~vI~~v~~~~~~~~~~~~~~~lGad~vi~~~~~~~~~~~~~v~ 98 (189)
T d1gu7a2 20 LTHYVKLTPGKDWFIQNGGTSAVGKYASQIGKLLNF-NSISVIRDRPNLDEVVASLKELGATQVITEDQNNSREFGPTIK 98 (189)
T ss_dssp HHSSSCCCTTTCEEEESCTTSHHHHHHHHHHHHHTC-EEEEEECCCTTHHHHHHHHHHHTCSEEEEHHHHHCGGGHHHHH
T ss_pred HHHHhCCCCCCEEEEEeCCCchHHHHHHHHHhhcCC-eEEEEEecccccchHHhhhhhccccEEEeccccchhHHHHHHH
Confidence 4444455677778887333 35667777776 88 67766434 445555556666666432211111221210
Q ss_pred -----CCCcccEEEEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 141 -----LPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 141 -----~~~~~D~Ivse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
....+|+|+- .++ ...+....+.|+++|+++..
T Consensus 99 ~~~~~~g~~vdvv~D-~vg---------~~~~~~~~~~l~~~G~~v~~ 136 (189)
T d1gu7a2 99 EWIKQSGGEAKLALN-CVG---------GKSSTGIARKLNNNGLMLTY 136 (189)
T ss_dssp HHHHHHTCCEEEEEE-SSC---------HHHHHHHHHTSCTTCEEEEC
T ss_pred HHHhhccCCceEEEE-CCC---------cchhhhhhhhhcCCcEEEEE
Confidence 1246888884 221 12244556889999998854
|
| >d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhfP species: Bacillus subtilis [TaxId: 1423]
Probab=88.76 E-value=0.34 Score=38.27 Aligned_cols=90 Identities=17% Similarity=0.154 Sum_probs=55.3
Q ss_pred CCCCEEEEECCc--ccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEccccc--C--CCCCcccEE
Q 016351 77 FQGKTVLDVGTG--SGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVED--I--VLPEKVDVI 148 (391)
Q Consensus 77 ~~~~~VLDlGcG--tG~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~--~--~~~~~~D~I 148 (391)
.++..||--|++ .|.+++.+|+. |+ +|+++-.+ +..+.+++ .|... + +-..+... . ..++.+|+|
T Consensus 22 ~~~~~VLV~gaaGgVG~~avQlAk~~Ga-~Viat~~s~~k~~~~~~----lGad~-v-i~~~~~~~~~~~~~~~~gvd~v 94 (167)
T d1tt7a2 22 PEKGSVLVTGATGGVGGIAVSMLNKRGY-DVVASTGNREAADYLKQ----LGASE-V-ISREDVYDGTLKALSKQQWQGA 94 (167)
T ss_dssp GGGCCEEEESTTSHHHHHHHHHHHHHTC-CEEEEESSSSTHHHHHH----HTCSE-E-EEHHHHCSSCCCSSCCCCEEEE
T ss_pred CCCCEEEEeCCcchHHHHHHHHHHHcCC-ceEEEecCHHHHHHHHh----hcccc-e-EeccchhchhhhcccCCCceEE
Confidence 345568877753 36778888887 87 79999988 66666654 34332 1 11112111 1 123679998
Q ss_pred EEccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 149 ISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 149 vse~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
+-.. + ...+....+.|+++|+++..
T Consensus 95 id~v-g---------g~~~~~~~~~l~~~G~iv~~ 119 (167)
T d1tt7a2 95 VDPV-G---------GKQLASLLSKIQYGGSVAVS 119 (167)
T ss_dssp EESC-C---------THHHHHHHTTEEEEEEEEEC
T ss_pred EecC-c---------HHHHHHHHHHhccCceEEEe
Confidence 8522 1 13466778899999998854
|
| >d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=88.69 E-value=0.65 Score=39.50 Aligned_cols=74 Identities=24% Similarity=0.373 Sum_probs=55.9
Q ss_pred CCCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech--HHHHHHHHHHHHcCCCCcEEEEEcccccCC----------
Q 016351 76 HFQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT--KMSDHARTLVKANNLQDVVEVIEGSVEDIV---------- 140 (391)
Q Consensus 76 ~~~~~~VLDlGcGtG~---l~~~~a~~g~~~V~avD~s--~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~---------- 140 (391)
.++++++|--|+++|+ ++..+++.|+ +|+.++.+ +.++.+.+.++..+.. +.++..|+.+..
T Consensus 15 sL~gK~~lITGas~GIG~aia~~la~~Ga-~Vvi~~~~~~~~~~~~~~~~~~~g~~--~~~~~~D~~~~~~v~~~~~~~~ 91 (272)
T d1g0oa_ 15 SLEGKVALVTGAGRGIGREMAMELGRRGC-KVIVNYANSTESAEEVVAAIKKNGSD--AACVKANVGVVEDIVRMFEEAV 91 (272)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCC--EEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEeCCchHHHHHHHHHHHhhCCc--eeeEeCCCCCHHHHHHHHHHHH
Confidence 4678999999999985 6777888898 79999876 5666666667766643 899999987742
Q ss_pred -CCCcccEEEEcc
Q 016351 141 -LPEKVDVIISEW 152 (391)
Q Consensus 141 -~~~~~D~Ivse~ 152 (391)
..++.|+++...
T Consensus 92 ~~~g~idilV~na 104 (272)
T d1g0oa_ 92 KIFGKLDIVCSNS 104 (272)
T ss_dssp HHHSCCCEEEECC
T ss_pred HHhCCCCcccccc
Confidence 116789998744
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.52 E-value=0.71 Score=38.64 Aligned_cols=69 Identities=26% Similarity=0.268 Sum_probs=49.7
Q ss_pred CCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC-------CCCcc
Q 016351 77 FQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV-------LPEKV 145 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~---l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~-------~~~~~ 145 (391)
++++++|-.|+++|+ ++..+++.|+ +|+.+|.+ +-++.+.+ +.+ .+..++.|+.+.. .-+++
T Consensus 5 L~GK~~lITGas~GIG~aia~~la~~G~-~V~~~~r~~~~l~~~~~---~~~---~~~~~~~Dv~d~~~v~~~~~~~g~i 77 (244)
T d1pr9a_ 5 LAGRRVLVTGAGKGIGRGTVQALHATGA-RVVAVSRTQADLDSLVR---ECP---GIEPVCVDLGDWEATERALGSVGPV 77 (244)
T ss_dssp CTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHH---HST---TCEEEECCTTCHHHHHHHHTTCCCC
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHHH---hcC---CCeEEEEeCCCHHHHHHHHHHhCCc
Confidence 688999999999984 5677788898 79999999 65544332 221 2778888887642 11689
Q ss_pred cEEEEcc
Q 016351 146 DVIISEW 152 (391)
Q Consensus 146 D~Ivse~ 152 (391)
|++|.+.
T Consensus 78 DilVnnA 84 (244)
T d1pr9a_ 78 DLLVNNA 84 (244)
T ss_dssp CEEEECC
T ss_pred eEEEecc
Confidence 9999753
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=88.28 E-value=1.1 Score=33.27 Aligned_cols=62 Identities=23% Similarity=0.341 Sum_probs=41.3
Q ss_pred EEEEECCcc-cH-HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC----CC-CcccEEEE
Q 016351 81 TVLDVGTGS-GI-LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV----LP-EKVDVIIS 150 (391)
Q Consensus 81 ~VLDlGcGt-G~-l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~----~~-~~~D~Ivs 150 (391)
+|+-+|+|. |. ++..+.+.|. .|+.+|.+ +.++.+++. .+ +.++.+|..+.. .. +.+|.+++
T Consensus 2 ~IvI~G~G~~G~~la~~L~~~g~-~v~vid~d~~~~~~~~~~---~~----~~vi~Gd~~~~~~l~~~~i~~a~~vv~ 71 (132)
T d1lssa_ 2 YIIIAGIGRVGYTLAKSLSEKGH-DIVLIDIDKDICKKASAE---ID----ALVINGDCTKIKTLEDAGIEDADMYIA 71 (132)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHH---CS----SEEEESCTTSHHHHHHTTTTTCSEEEE
T ss_pred EEEEECCCHHHHHHHHHHHHCCC-CcceecCChhhhhhhhhh---hh----hhhccCcccchhhhhhcChhhhhhhcc
Confidence 578888864 32 2334445576 79999999 766554432 22 688999988753 22 67898887
|
| >d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative oxidoreductase Rv2002 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=87.76 E-value=0.69 Score=38.77 Aligned_cols=71 Identities=17% Similarity=0.157 Sum_probs=51.7
Q ss_pred CCCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC----------
Q 016351 76 HFQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL---------- 141 (391)
Q Consensus 76 ~~~~~~VLDlGcGtG~---l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~---------- 141 (391)
.++++++|--|++.|+ ++..+++.|+ +|+.+|.+ +.++.+.+.. .+++.+++.|+.+..-
T Consensus 3 ~L~gK~alITGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dv~~~~~v~~~~~~~~~ 76 (244)
T d1nffa_ 3 RLTGKVALVSGGARGMGASHVRAMVAEGA-KVVFGDILDEEGKAMAAEL-----ADAARYVHLDVTQPAQWKAAVDTAVT 76 (244)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHT-----GGGEEEEECCTTCHHHHHHHHHHHHH
T ss_pred ccCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHh-----hCcceEEEeecCCHHHHHHHHHHHHH
Confidence 4678999999999985 5677888899 79999999 6554443332 2458899999877420
Q ss_pred -CCcccEEEEcc
Q 016351 142 -PEKVDVIISEW 152 (391)
Q Consensus 142 -~~~~D~Ivse~ 152 (391)
-++.|++|.+.
T Consensus 77 ~~g~idilinnA 88 (244)
T d1nffa_ 77 AFGGLHVLVNNA 88 (244)
T ss_dssp HHSCCCEEEECC
T ss_pred HhCCCeEEEECC
Confidence 15789998753
|
| >d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: meso-2,3-butanediol dehydrogenase species: Klebsiella pneumoniae [TaxId: 573]
Probab=87.59 E-value=0.99 Score=37.93 Aligned_cols=70 Identities=20% Similarity=0.222 Sum_probs=52.5
Q ss_pred CEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC-----------CCCc
Q 016351 80 KTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV-----------LPEK 144 (391)
Q Consensus 80 ~~VLDlGcGtG~---l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~-----------~~~~ 144 (391)
+++|--|++.|+ ++..+++.|+ +|+.+|.+ +.++.+.+.++..+- ++.++.+|+.+.. .-++
T Consensus 2 KValITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~i~~~g~--~~~~~~~Dv~~~~~v~~~~~~~~~~~g~ 78 (255)
T d1gega_ 2 KVALVTGAGQGIGKAIALRLVKDGF-AVAIADYNDATAKAVASEINQAGG--HAVAVKVDVSDRDQVFAAVEQARKTLGG 78 (255)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCTTSHHHHHHHHHHHHHHTTC
T ss_pred CEEEEcCCccHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCC--cEEEEEeeCCCHHHHHHHHHHHHHHhCC
Confidence 456888998875 4667788898 79999999 777777776766653 4889999988742 1168
Q ss_pred ccEEEEcc
Q 016351 145 VDVIISEW 152 (391)
Q Consensus 145 ~D~Ivse~ 152 (391)
.|++|.+.
T Consensus 79 iDilVnnA 86 (255)
T d1gega_ 79 FDVIVNNA 86 (255)
T ss_dssp CCEEEECC
T ss_pred ccEEEecc
Confidence 99999753
|
| >d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: R-specific alcohol dehydrogenase species: Lactobacillus brevis [TaxId: 1580]
Probab=87.56 E-value=0.79 Score=38.51 Aligned_cols=73 Identities=21% Similarity=0.236 Sum_probs=54.1
Q ss_pred CCCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC----------
Q 016351 76 HFQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL---------- 141 (391)
Q Consensus 76 ~~~~~~VLDlGcGtG~---l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~---------- 141 (391)
.++++++|--|++.|+ .+..+++.|+ +|+.++.+ +.++.+.+.+. ..+++.++.+|+.+..-
T Consensus 3 rL~gK~alVTGas~GIG~aia~~la~~Ga-~V~~~~r~~~~~~~~~~~~~---~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 78 (251)
T d1zk4a1 3 RLDGKVAIITGGTLGIGLAIATKFVEEGA-KVMITGRHSDVGEKAAKSVG---TPDQIQFFQHDSSDEDGWTKLFDATEK 78 (251)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHC---CTTTEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhC---CCCcEEEEEccCCCHHHHHHHHHHHHH
Confidence 3678999999998885 4667788898 79999999 76665555443 23469999999877420
Q ss_pred -CCcccEEEEcc
Q 016351 142 -PEKVDVIISEW 152 (391)
Q Consensus 142 -~~~~D~Ivse~ 152 (391)
-++.|++|.+.
T Consensus 79 ~~G~iDiLVnnA 90 (251)
T d1zk4a1 79 AFGPVSTLVNNA 90 (251)
T ss_dssp HHSSCCEEEECC
T ss_pred HhCCceEEEecc
Confidence 16799999754
|
| >d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Escherichia coli [TaxId: 562]
Probab=87.31 E-value=2.3 Score=35.32 Aligned_cols=72 Identities=19% Similarity=0.199 Sum_probs=50.3
Q ss_pred CCCCEEEEECCcc--cH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccC-----------
Q 016351 77 FQGKTVLDVGTGS--GI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDI----------- 139 (391)
Q Consensus 77 ~~~~~VLDlGcGt--G~---l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~----------- 139 (391)
+++++||--|+++ |+ .+..+++.|+ +|+.++.+ +..+.+.+.....+- ......|..+.
T Consensus 3 L~gK~~lITGass~~GIG~aiA~~l~~~G~-~V~i~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 78 (258)
T d1qsga_ 3 LSGKRILVTGVASKLSIAYGIAQAMHREGA-ELAFTYQNDKLKGRVEEFAAQLGS---DIVLQCDVAEDASIDTMFAELG 78 (258)
T ss_dssp TTTCEEEECCCCSTTSHHHHHHHHHHHTTC-EEEEEESSTTTHHHHHHHHHHTTC---CCEEECCTTCHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCchhHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHhhcCC---cceeecccchHHHHHHHHHHhh
Confidence 5789999999866 64 6678888898 69999998 766777776666543 44555555442
Q ss_pred CCCCcccEEEEcc
Q 016351 140 VLPEKVDVIISEW 152 (391)
Q Consensus 140 ~~~~~~D~Ivse~ 152 (391)
......|.++...
T Consensus 79 ~~~~~~d~~v~~a 91 (258)
T d1qsga_ 79 KVWPKFDGFVHSI 91 (258)
T ss_dssp TTCSSEEEEEECC
T ss_pred hcccccceEEEee
Confidence 1226788888753
|
| >d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (s)-1-phenylethanol dehydrogenase species: Azoarcus sp. ebn1 [TaxId: 76114]
Probab=86.65 E-value=1.2 Score=37.23 Aligned_cols=72 Identities=17% Similarity=0.196 Sum_probs=52.0
Q ss_pred CCCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC----------
Q 016351 76 HFQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL---------- 141 (391)
Q Consensus 76 ~~~~~~VLDlGcGtG~---l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~---------- 141 (391)
.++++++|--|++.|+ ++..+++.|+ +|+.+|.+ . +.+.+.++..+ .++.++.+|+.+..-
T Consensus 2 rL~gKvalVTGas~GIG~aia~~la~~Ga-~V~~~~~~~~--~~~~~~~~~~g--~~~~~~~~Dvs~~~~v~~~~~~~~~ 76 (247)
T d2ew8a1 2 RLKDKLAVITGGANGIGRAIAERFAVEGA-DIAIADLVPA--PEAEAAIRNLG--RRVLTVKCDVSQPGDVEAFGKQVIS 76 (247)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCC--HHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCch--HHHHHHHHHcC--CcEEEEEeeCCCHHHHHHHHHHHHH
Confidence 4688999999998885 5677888898 79999987 4 23334455544 458999999877420
Q ss_pred -CCcccEEEEcc
Q 016351 142 -PEKVDVIISEW 152 (391)
Q Consensus 142 -~~~~D~Ivse~ 152 (391)
-++.|++|.+.
T Consensus 77 ~~G~iDilVnnA 88 (247)
T d2ew8a1 77 TFGRCDILVNNA 88 (247)
T ss_dssp HHSCCCEEEECC
T ss_pred HcCCCCEEEECC
Confidence 15799999753
|
| >d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=86.54 E-value=1.1 Score=37.37 Aligned_cols=69 Identities=28% Similarity=0.230 Sum_probs=48.9
Q ss_pred CCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC-------CCCcc
Q 016351 77 FQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV-------LPEKV 145 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~---l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~-------~~~~~ 145 (391)
++++++|--|++.|+ ++..+++.|+ +|+.++.+ +-++.+. ++. . .+..+..|+.+.. --++.
T Consensus 3 l~GK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~---~~~--~-~~~~~~~Dv~~~~~v~~~~~~~g~i 75 (242)
T d1cyda_ 3 FSGLRALVTGAGKGIGRDTVKALHASGA-KVVAVTRTNSDLVSLA---KEC--P-GIEPVCVDLGDWDATEKALGGIGPV 75 (242)
T ss_dssp CTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHH---HHS--T-TCEEEECCTTCHHHHHHHHTTCCCC
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHH---Hhc--C-CCeEEEEeCCCHHHHHHHHHHcCCC
Confidence 578999999999885 5677788898 79999998 5443332 222 1 2778888887642 11689
Q ss_pred cEEEEcc
Q 016351 146 DVIISEW 152 (391)
Q Consensus 146 D~Ivse~ 152 (391)
|++|.+.
T Consensus 76 DilVnnA 82 (242)
T d1cyda_ 76 DLLVNNA 82 (242)
T ss_dssp SEEEECC
T ss_pred eEEEECC
Confidence 9999753
|
| >d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RPA4359-like domain: Hypothetical protein RPA4359 species: Rhodopseudomonas palustris [TaxId: 1076]
Probab=86.17 E-value=1.6 Score=38.71 Aligned_cols=73 Identities=23% Similarity=0.324 Sum_probs=42.8
Q ss_pred CCCCEEEEECCcccHHHHHHHHc-C-------CCeEEEEechHHH-HHHHHHHHHcCCCCcEEEEEcccccCCCCCcccE
Q 016351 77 FQGKTVLDVGTGSGILAIWSAQA-G-------ARKVYAVEATKMS-DHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDV 147 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~l~~~~a~~-g-------~~~V~avD~s~~~-~~a~~~~~~~~~~~~v~~i~~d~~~~~~~~~~D~ 147 (391)
.+...|+|+|+|+|.|+.-+.+. . ..+++.+|.|+.+ ..-++..+ .. .++.++ .++.+++ ...-+
T Consensus 78 ~~~~~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~s~~L~~~Q~~~l~--~~-~~i~w~-~~~~~~~--~~~g~ 151 (365)
T d1zkda1 78 PQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLA--GI-RNIHWH-DSFEDVP--EGPAV 151 (365)
T ss_dssp CSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHST--TC-SSEEEE-SSGGGSC--CSSEE
T ss_pred CccceEEecCCcccHHHHhhhhhhcccccccccceEEEeccchhHHHHHHHHhc--cc-ccceec-cChhhcc--cCCeE
Confidence 34568999999999998766553 1 1258899999444 33333332 22 236554 3444442 33467
Q ss_pred EEE-ccccc
Q 016351 148 IIS-EWMGY 155 (391)
Q Consensus 148 Ivs-e~~~~ 155 (391)
|+| |.++.
T Consensus 152 iiaNE~fDA 160 (365)
T d1zkda1 152 ILANEYFDV 160 (365)
T ss_dssp EEEESSGGG
T ss_pred EEecccCcc
Confidence 777 44433
|
| >d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Haemophilus influenzae [TaxId: 727]
Probab=86.05 E-value=3.5 Score=32.06 Aligned_cols=81 Identities=9% Similarity=0.123 Sum_probs=48.2
Q ss_pred HHHHHHHhcCCCCCCCEEEEECCcccHHH-HHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCCC
Q 016351 65 AYFNSIFQNKHHFQGKTVLDVGTGSGILA-IWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVLP 142 (391)
Q Consensus 65 ~~~~~i~~~~~~~~~~~VLDlGcGtG~l~-~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~~ 142 (391)
-|.+.+.+.-...++++||-+|||--.-+ ..+...+.++|+.+..+ +-++...+.+... ..+..+..+... .
T Consensus 4 Gf~~~l~~~~~~~~~k~vlIlGaGGaarai~~aL~~~~~~i~I~nR~~~~a~~l~~~~~~~---~~~~~~~~~~~~---~ 77 (171)
T d1p77a1 4 GLVTDLQRLNWLRPNQHVLILGAGGATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQPY---GNIQAVSMDSIP---L 77 (171)
T ss_dssp HHHHHHHHTTCCCTTCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHGGG---SCEEEEEGGGCC---C
T ss_pred HHHHHHHHcCCCCCCCEEEEECCcHHHHHHHHHHcccCceeeeccchHHHHHHHHHHHhhc---cccchhhhcccc---c
Confidence 34555554433567899999999864332 22223355689999888 5554444444332 225555544332 2
Q ss_pred CcccEEEEc
Q 016351 143 EKVDVIISE 151 (391)
Q Consensus 143 ~~~D~Ivse 151 (391)
..+|+||.-
T Consensus 78 ~~~diiIN~ 86 (171)
T d1p77a1 78 QTYDLVINA 86 (171)
T ss_dssp SCCSEEEEC
T ss_pred cccceeeec
Confidence 689999973
|
| >d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,6,8-tetrahydroxynaphthalene reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=86.00 E-value=0.96 Score=38.06 Aligned_cols=74 Identities=22% Similarity=0.244 Sum_probs=54.1
Q ss_pred CCCCCEEEEECCccc---HHHHHHHHcCCCeEEEE-ech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC----------
Q 016351 76 HFQGKTVLDVGTGSG---ILAIWSAQAGARKVYAV-EAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV---------- 140 (391)
Q Consensus 76 ~~~~~~VLDlGcGtG---~l~~~~a~~g~~~V~av-D~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~---------- 140 (391)
.+.+++||-.|+++| -++..+++.|+ +|+.. ..+ ..++.+.+.++..+. ++.++..|+.+..
T Consensus 3 ~L~GK~alITGas~GIG~aia~~la~~G~-~Vvi~~~~~~~~~~~~~~~~~~~g~--~~~~~~~D~~~~~~v~~~~~~~~ 79 (259)
T d1ja9a_ 3 PLAGKVALTTGAGRGIGRGIAIELGRRGA-SVVVNYGSSSKAAEEVVAELKKLGA--QGVAIQADISKPSEVVALFDKAV 79 (259)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTC--CEEEEECCTTSHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEcCCChHHHHHHHHHHHHcCC--CceEecCCCCCHHHHHHHHHHHH
Confidence 467899999998887 35677888899 57665 445 667777777777764 3889999987742
Q ss_pred -CCCcccEEEEcc
Q 016351 141 -LPEKVDVIISEW 152 (391)
Q Consensus 141 -~~~~~D~Ivse~ 152 (391)
..+..|++|.+.
T Consensus 80 ~~~g~idilinna 92 (259)
T d1ja9a_ 80 SHFGGLDFVMSNS 92 (259)
T ss_dssp HHHSCEEEEECCC
T ss_pred HHcCCCcEEEecc
Confidence 115799998743
|
| >d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Retinal dehydrogenase/reductase 3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.87 E-value=0.89 Score=38.19 Aligned_cols=70 Identities=19% Similarity=0.201 Sum_probs=50.6
Q ss_pred CCCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC----------
Q 016351 76 HFQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL---------- 141 (391)
Q Consensus 76 ~~~~~~VLDlGcGtG~---l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~---------- 141 (391)
.++++++|--|+++|+ ++..+++.|+ +|+.+|.+ +.++...+ +. . .+.++.+|+.+..-
T Consensus 3 rl~GK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~---~~--~-~~~~~~~Dvs~~~~v~~~~~~~~~ 75 (250)
T d1ydea1 3 RYAGKVVVVTGGGRGIGAGIVRAFVNSGA-RVVICDKDESGGRALEQ---EL--P-GAVFILCDVTQEDDVKTLVSETIR 75 (250)
T ss_dssp TTTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHH---HC--T-TEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHH---hc--C-CCeEEEccCCCHHHHHHHHHHHHH
Confidence 4688999999999885 5677788898 79999998 65544332 22 1 37888999877420
Q ss_pred -CCcccEEEEcc
Q 016351 142 -PEKVDVIISEW 152 (391)
Q Consensus 142 -~~~~D~Ivse~ 152 (391)
-++.|++|.+.
T Consensus 76 ~~g~iDilVnnA 87 (250)
T d1ydea1 76 RFGRLDCVVNNA 87 (250)
T ss_dssp HHSCCCEEEECC
T ss_pred hcCCCCEEEecc
Confidence 15799999854
|
| >d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase species: Bacillus megaterium [TaxId: 1404]
Probab=85.76 E-value=0.89 Score=38.46 Aligned_cols=73 Identities=25% Similarity=0.250 Sum_probs=54.2
Q ss_pred CCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-H-HHHHHHHHHHHcCCCCcEEEEEcccccCCC----------
Q 016351 77 FQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-K-MSDHARTLVKANNLQDVVEVIEGSVEDIVL---------- 141 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~---l~~~~a~~g~~~V~avD~s-~-~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~---------- 141 (391)
++++++|--|++.|+ ++..+++.|+ +|+.++.+ + .++.+.+.++..+. ++..+..|+.+...
T Consensus 5 L~gK~alITGas~GIG~aia~~la~~G~-~Vv~~~r~~~~~~~~~~~~~~~~g~--~~~~~~~Dvt~~~~v~~~~~~~~~ 81 (261)
T d1geea_ 5 LEGKVVVITGSSTGLGKSMAIRFATEKA-KVVVNYRSKEDEANSVLEEIKKVGG--EAIAVKGDVTVESDVINLVQSAIK 81 (261)
T ss_dssp GTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTC--EEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCcHHHHHHHHHHHHhcCC--cEEEEEccCCCHHHHHHHHHHHHH
Confidence 578999999999885 4667788898 79999987 3 56666666666553 48899999877420
Q ss_pred -CCcccEEEEcc
Q 016351 142 -PEKVDVIISEW 152 (391)
Q Consensus 142 -~~~~D~Ivse~ 152 (391)
-++.|++|.+.
T Consensus 82 ~~G~iDiLVnnA 93 (261)
T d1geea_ 82 EFGKLDVMINNA 93 (261)
T ss_dssp HHSCCCEEEECC
T ss_pred HhCCCCEeeccc
Confidence 15799999854
|
| >d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Escherichia coli [TaxId: 562]
Probab=85.61 E-value=1 Score=37.63 Aligned_cols=70 Identities=24% Similarity=0.265 Sum_probs=51.0
Q ss_pred CCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC-----------C
Q 016351 77 FQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV-----------L 141 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~---l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~-----------~ 141 (391)
++++++|--|+++|+ ++..+++.|+ +|+.++.+ +.++...+... .++..+..|+.+.. .
T Consensus 2 l~gK~alITGas~GIG~a~a~~l~~~G~-~Vv~~~r~~~~l~~~~~~~~-----~~~~~~~~Dv~~~~~v~~~~~~~~~~ 75 (243)
T d1q7ba_ 2 FEGKIALVTGASRGIGRAIAETLAARGA-KVIGTATSENGAQAISDYLG-----ANGKGLMLNVTDPASIESVLEKIRAE 75 (243)
T ss_dssp CTTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHG-----GGEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHhC-----CCCcEEEEEecCHHHhhhhhhhhhcc
Confidence 578999999999885 5667788898 79999999 66655544442 23788888987642 1
Q ss_pred CCcccEEEEcc
Q 016351 142 PEKVDVIISEW 152 (391)
Q Consensus 142 ~~~~D~Ivse~ 152 (391)
-++.|++|.+.
T Consensus 76 ~g~iDilVnnA 86 (243)
T d1q7ba_ 76 FGEVDILVNNA 86 (243)
T ss_dssp TCSCSEEEECC
T ss_pred cCCcceehhhh
Confidence 15899999753
|
| >d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase species: Streptomyces hydrogenans [TaxId: 1905]
Probab=84.86 E-value=1.1 Score=37.80 Aligned_cols=71 Identities=23% Similarity=0.215 Sum_probs=51.1
Q ss_pred CCCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC----------
Q 016351 76 HFQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL---------- 141 (391)
Q Consensus 76 ~~~~~~VLDlGcGtG~---l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~---------- 141 (391)
.++++++|--|++.|+ ++..+++.|+ +|+.+|.+ +.++.. +++ +.+++.+++.|+.+..-
T Consensus 2 dL~gK~alVTGas~GIG~aia~~la~~Ga-~V~~~~r~~~~~~~~---~~~--~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 75 (254)
T d1hdca_ 2 DLSGKTVIITGGARGLGAEAARQAVAAGA-RVVLADVLDEEGAAT---ARE--LGDAARYQHLDVTIEEDWQRVVAYARE 75 (254)
T ss_dssp CCCCSEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH---HHT--TGGGEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCcCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHH---HHH--hCCceEEEEcccCCHHHHHHHHHHHHH
Confidence 3678999999999985 5677888899 79999998 544332 222 23558999999877420
Q ss_pred -CCcccEEEEcc
Q 016351 142 -PEKVDVIISEW 152 (391)
Q Consensus 142 -~~~~D~Ivse~ 152 (391)
-++.|++|.+.
T Consensus 76 ~~g~iDilVnnA 87 (254)
T d1hdca_ 76 EFGSVDGLVNNA 87 (254)
T ss_dssp HHSCCCEEEECC
T ss_pred HcCCccEEEecC
Confidence 15799988743
|
| >d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 11-beta-hydroxysteroid dehydrogenase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.58 E-value=1 Score=38.12 Aligned_cols=74 Identities=24% Similarity=0.357 Sum_probs=51.7
Q ss_pred CCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC-----------
Q 016351 77 FQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL----------- 141 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~---l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~----------- 141 (391)
++++++|-.|+++|+ ++..+++.|+ +|+.++.+ +.++.+.+......- ..+.++..|..+...
T Consensus 12 L~GK~alITGassGIG~aiA~~la~~G~-~Vil~~r~~~~l~~~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~ 89 (269)
T d1xu9a_ 12 LQGKKVIVTGASKGIGREMAYHLAKMGA-HVVVTARSKETLQKVVSHCLELGA-ASAHYIAGTMEDMTFAEQFVAQAGKL 89 (269)
T ss_dssp GTTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHTC-SEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHhhhhc-ccchhhhhhhhhHHHHHHHHHHHHHH
Confidence 578999999999985 5677888898 79999999 766665544433322 337778877665310
Q ss_pred CCcccEEEEcc
Q 016351 142 PEKVDVIISEW 152 (391)
Q Consensus 142 ~~~~D~Ivse~ 152 (391)
.+..|+++.+.
T Consensus 90 ~g~~~~li~na 100 (269)
T d1xu9a_ 90 MGGLDMLILNH 100 (269)
T ss_dssp HTSCSEEEECC
T ss_pred hCCcccccccc
Confidence 15678887643
|
| >d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sepiapterin reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=84.47 E-value=0.98 Score=37.96 Aligned_cols=63 Identities=14% Similarity=0.118 Sum_probs=45.9
Q ss_pred CCCCCEEEEECCcccH---HHHHHHH---cCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccC
Q 016351 76 HFQGKTVLDVGTGSGI---LAIWSAQ---AGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDI 139 (391)
Q Consensus 76 ~~~~~~VLDlGcGtG~---l~~~~a~---~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~ 139 (391)
.++++++|--|+++|+ ++..+|+ .|+ +|+.++.+ +.++.+.+.+...+...++.++.+|+.+.
T Consensus 3 ~L~gKvalITGas~GIG~aiA~~lA~~~~~G~-~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dvs~~ 72 (259)
T d1oaaa_ 3 GLGCAVCVLTGASRGFGRALAPQLARLLSPGS-VMLVSARSESMLRQLKEELGAQQPDLKVVLAAADLGTE 72 (259)
T ss_dssp CCBSEEEEESSCSSHHHHHHHHHHHTTBCTTC-EEEEEESCHHHHHHHHHHHHHHCTTSEEEEEECCTTSH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHhcccCCC-EEEEEECCHHHHHHHHHHHHhhcCCceEEEEEccCCCH
Confidence 3567788888998876 3445555 366 79999999 77777766666655555699999998763
|
| >d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase species: Pseudomonas sp., lb400 [TaxId: 306]
Probab=84.38 E-value=1.5 Score=37.27 Aligned_cols=70 Identities=29% Similarity=0.300 Sum_probs=50.5
Q ss_pred CCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC-----------
Q 016351 77 FQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL----------- 141 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~---l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~----------- 141 (391)
++++++|--|+++|+ ++..+++.|+ +|+.+|.+ +.++...+.. + .++..+..|+.+...
T Consensus 3 L~gK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~l~~~~~~~---~--~~~~~~~~Dv~~~~~~~~~~~~~~~~ 76 (276)
T d1bdba_ 3 LKGEAVLITGGASGLGRALVDRFVAEGA-KVAVLDKSAERLAELETDH---G--DNVLGIVGDVRSLEDQKQAASRCVAR 76 (276)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHH---G--GGEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHc---C--CCeeEEecccccHHHHHHHHHHHHHH
Confidence 578999999998885 5677788898 79999999 6554433322 2 348899999877420
Q ss_pred CCcccEEEEcc
Q 016351 142 PEKVDVIISEW 152 (391)
Q Consensus 142 ~~~~D~Ivse~ 152 (391)
-++.|++|.+.
T Consensus 77 ~g~idilvnnA 87 (276)
T d1bdba_ 77 FGKIDTLIPNA 87 (276)
T ss_dssp HSCCCEEECCC
T ss_pred hCCcccccccc
Confidence 15789998743
|
| >d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sorbitol dehydrogenase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=84.31 E-value=0.94 Score=38.12 Aligned_cols=70 Identities=21% Similarity=0.254 Sum_probs=50.9
Q ss_pred CCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC-----------
Q 016351 77 FQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL----------- 141 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~---l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~----------- 141 (391)
++++++|--|+++|+ ++..+++.|+ +|+.+|.+ +.++.+.+. .+ .++..+..|+.+..-
T Consensus 3 L~gK~alVTGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~---~~--~~~~~~~~Dvt~~~~v~~~~~~~~~~ 76 (256)
T d1k2wa_ 3 LDGKTALITGSARGIGRAFAEAYVREGA-RVAIADINLEAARATAAE---IG--PAACAIALDVTDQASIDRCVAELLDR 76 (256)
T ss_dssp TTTEEEEEETCSSHHHHHHHHHHHHTTE-EEEEEESCHHHHHHHHHH---HC--TTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHH---hC--CceEEEEeeCCCHHHHHHHHHHHHHH
Confidence 578999999999885 5677788898 79999998 655444332 22 348889999877420
Q ss_pred CCcccEEEEcc
Q 016351 142 PEKVDVIISEW 152 (391)
Q Consensus 142 ~~~~D~Ivse~ 152 (391)
-++.|++|.+.
T Consensus 77 ~g~iDilVnnA 87 (256)
T d1k2wa_ 77 WGSIDILVNNA 87 (256)
T ss_dssp HSCCCEEEECC
T ss_pred hCCccEEEeec
Confidence 15799999853
|
| >d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus, TTHB020 [TaxId: 274]
Probab=83.36 E-value=2.1 Score=35.42 Aligned_cols=71 Identities=24% Similarity=0.234 Sum_probs=51.2
Q ss_pred CCCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC----------
Q 016351 76 HFQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL---------- 141 (391)
Q Consensus 76 ~~~~~~VLDlGcGtG~---l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~---------- 141 (391)
.++++++|-.|++.|+ ++..+++.|+ +|+.++.+ +.++ +..++. ..++.+++.|+.+.+-
T Consensus 2 ~l~gK~alItGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~---~~~~~~--~~~~~~~~~Dls~~~~i~~~~~~i~~ 75 (241)
T d2a4ka1 2 RLSGKTILVTGAASGIGRAALDLFAREGA-SLVAVDREERLLA---EAVAAL--EAEAIAVVADVSDPKAVEAVFAEALE 75 (241)
T ss_dssp TTTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHH---HHHHTC--CSSEEEEECCTTSHHHHHHHHHHHHH
T ss_pred cCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHH---HHHHHc--CCceEEEEecCCCHHHHHHHHHHHHH
Confidence 3678999999999885 4666777898 79999999 5443 333333 3558899999876420
Q ss_pred -CCcccEEEEcc
Q 016351 142 -PEKVDVIISEW 152 (391)
Q Consensus 142 -~~~~D~Ivse~ 152 (391)
-+++|++|.+.
T Consensus 76 ~~g~iDiLinnA 87 (241)
T d2a4ka1 76 EFGRLHGVAHFA 87 (241)
T ss_dssp HHSCCCEEEEGG
T ss_pred HhCCccEecccc
Confidence 15799999854
|
| >d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus [TaxId: 274]
Probab=82.26 E-value=1.2 Score=37.09 Aligned_cols=67 Identities=22% Similarity=0.228 Sum_probs=48.3
Q ss_pred CCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC---------C-
Q 016351 77 FQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL---------P- 142 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~---l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~---------~- 142 (391)
++++++|--|+++|+ ++..+++.|+ +|+.+|.+ +.++.+.+ .. . +..+..|+.+..- .
T Consensus 3 L~gK~~lITGas~GIG~aia~~l~~~G~-~V~~~~r~~~~l~~~~~---~~--~--~~~~~~Dv~~~~~v~~~~~~~~~~ 74 (242)
T d1ulsa_ 3 LKDKAVLITGAAHGIGRATLELFAKEGA-RLVACDIEEGPLREAAE---AV--G--AHPVVMDVADPASVERGFAEALAH 74 (242)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHH---TT--T--CEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHH---Hc--C--CeEEEEecCCHHHHHHHHHHHHHh
Confidence 578999999999885 4667778898 79999999 65544432 22 2 6788889877420 1
Q ss_pred -CcccEEEEc
Q 016351 143 -EKVDVIISE 151 (391)
Q Consensus 143 -~~~D~Ivse 151 (391)
+++|++|.+
T Consensus 75 ~g~iDilVnn 84 (242)
T d1ulsa_ 75 LGRLDGVVHY 84 (242)
T ss_dssp HSSCCEEEEC
T ss_pred cCCceEEEEC
Confidence 579998874
|
| >d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3beta/17beta hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=82.24 E-value=1.1 Score=37.66 Aligned_cols=71 Identities=18% Similarity=0.218 Sum_probs=50.8
Q ss_pred CCCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC----------
Q 016351 76 HFQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL---------- 141 (391)
Q Consensus 76 ~~~~~~VLDlGcGtG~---l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~---------- 141 (391)
.++++++|--|+++|+ ++..+++.|+ +|+.+|.+ +.++.+.+.. ..+..++..|+.+..-
T Consensus 3 rL~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~~~~~~~~~~~~~~-----~~~~~~~~~Dv~~~~~~~~~~~~~~~ 76 (253)
T d1hxha_ 3 RLQGKVALVTGGASGVGLEVVKLLLGEGA-KVAFSDINEAAGQQLAAEL-----GERSMFVRHDVSSEADWTLVMAAVQR 76 (253)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHH-----CTTEEEECCCTTCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHh-----CCCeEEEEeecCCHHHHHHHHHHHHH
Confidence 3678999999998874 5667788898 79999999 6555443332 2347888888877420
Q ss_pred -CCcccEEEEcc
Q 016351 142 -PEKVDVIISEW 152 (391)
Q Consensus 142 -~~~~D~Ivse~ 152 (391)
-++.|++|.+.
T Consensus 77 ~~g~iDilVnnA 88 (253)
T d1hxha_ 77 RLGTLNVLVNNA 88 (253)
T ss_dssp HHCSCCEEEECC
T ss_pred HhCCCCeEEecc
Confidence 15789999854
|
| >d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: D(-)-3-hydroxybutyrate dehydrogenase species: Pseudomonas fragi [TaxId: 296]
Probab=82.10 E-value=1.2 Score=37.49 Aligned_cols=73 Identities=18% Similarity=0.208 Sum_probs=52.2
Q ss_pred CCCCEEEEECCcccH---HHHHHHHcCCCeEEEEech--HHHHHHHHHH-HHcCCCCcEEEEEcccccCCC---------
Q 016351 77 FQGKTVLDVGTGSGI---LAIWSAQAGARKVYAVEAT--KMSDHARTLV-KANNLQDVVEVIEGSVEDIVL--------- 141 (391)
Q Consensus 77 ~~~~~VLDlGcGtG~---l~~~~a~~g~~~V~avD~s--~~~~~a~~~~-~~~~~~~~v~~i~~d~~~~~~--------- 141 (391)
++++++|--|+++|+ .+..+++.|+ +|+.++.+ +.++.+.+.+ +..+. ++.++..|+.+..-
T Consensus 2 L~gK~alITGas~GIG~aiA~~la~~Ga-~V~~~~r~~~~~~~~~~~~~~~~~g~--~~~~~~~Dv~~~~~v~~~~~~~~ 78 (260)
T d1x1ta1 2 LKGKVAVVTGSTSGIGLGIATALAAQGA-DIVLNGFGDAAEIEKVRAGLAAQHGV--KVLYDGADLSKGEAVRGLVDNAV 78 (260)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEECCSCHHHHHHHHHHHHHHHTS--CEEEECCCTTSHHHHHHHHHHHH
T ss_pred CCcCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCcHHHHHHHHHHHHHhcCC--cEEEEECCCCCHHHHHHHHHHHH
Confidence 478999999999886 5667888898 79999986 4455554443 33343 38899999887420
Q ss_pred --CCcccEEEEcc
Q 016351 142 --PEKVDVIISEW 152 (391)
Q Consensus 142 --~~~~D~Ivse~ 152 (391)
-++.|++|.+.
T Consensus 79 ~~~G~iDiLVnnA 91 (260)
T d1x1ta1 79 RQMGRIDILVNNA 91 (260)
T ss_dssp HHHSCCSEEEECC
T ss_pred HHhCCCcEEEeec
Confidence 15799999753
|
| >d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=81.73 E-value=3.3 Score=32.50 Aligned_cols=89 Identities=17% Similarity=0.126 Sum_probs=53.2
Q ss_pred CCCCEEEEECCc--ccHHHHHHHHc-CCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCC--C-CCcccEEE
Q 016351 77 FQGKTVLDVGTG--SGILAIWSAQA-GARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIV--L-PEKVDVII 149 (391)
Q Consensus 77 ~~~~~VLDlGcG--tG~l~~~~a~~-g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~--~-~~~~D~Iv 149 (391)
.++..||-.|+. .|..++.+|+. |+ +|+++-.+ +..+.+++ .|. -.++.-+-.+.. + ...+|.++
T Consensus 30 ~~~~~vlV~gasGGVG~~aiQlAk~~Ga-~Via~~~~~~k~~~~~~----lGa---d~vi~~~~~~~~~~l~~~~~~~vv 101 (177)
T d1o89a2 30 PQDGEIVVTGASGGVGSTAVALLHKLGY-QVVAVSGRESTHEYLKS----LGA---SRVLPRDEFAESRPLEKQVWAGAI 101 (177)
T ss_dssp GGGCEEEESSTTSHHHHHHHHHHHHTTC-CEEEEESCGGGHHHHHH----HTE---EEEEEGGGSSSCCSSCCCCEEEEE
T ss_pred CCCCcEEEEEccccchHHHHHHHHHcCC-CeEEEecchhHHHHHHh----hcc---ccccccccHHHHHHHHhhcCCeeE
Confidence 344578876643 35677777776 77 69998888 66665554 333 233333322221 1 25578876
Q ss_pred EccccccccCcchHHHHHHHHhccccCCeEEEcc
Q 016351 150 SEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 150 se~~~~~~~~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
|.++ ...+....+.|+++|+++..
T Consensus 102 -D~Vg---------g~~~~~~l~~l~~~Griv~~ 125 (177)
T d1o89a2 102 -DTVG---------DKVLAKVLAQMNYGGCVAAC 125 (177)
T ss_dssp -ESSC---------HHHHHHHHHTEEEEEEEEEC
T ss_pred -EEcc---------hHHHHHHHHHhccccceEee
Confidence 3321 13466677889999999865
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=81.46 E-value=0.94 Score=33.67 Aligned_cols=61 Identities=13% Similarity=0.152 Sum_probs=38.4
Q ss_pred EEEEECCcc-cH-HHHHHHHcCCCeEEEEech-HHHHHHHHHHHHcCCCCcEEEEEcccccCCC----C-CcccEEEE
Q 016351 81 TVLDVGTGS-GI-LAIWSAQAGARKVYAVEAT-KMSDHARTLVKANNLQDVVEVIEGSVEDIVL----P-EKVDVIIS 150 (391)
Q Consensus 81 ~VLDlGcGt-G~-l~~~~a~~g~~~V~avD~s-~~~~~a~~~~~~~~~~~~v~~i~~d~~~~~~----~-~~~D~Ivs 150 (391)
+++-+|+|. |. ++..+.+.|. .|+++|.+ +.++.++ ..+ ..++.+|..+... . ..+|.+++
T Consensus 2 ~~iIiG~G~~G~~la~~L~~~g~-~vvvid~d~~~~~~~~----~~~----~~~~~gd~~~~~~l~~a~i~~a~~vi~ 70 (134)
T d2hmva1 2 QFAVIGLGRFGGSIVKELHRMGH-EVLAVDINEEKVNAYA----SYA----THAVIANATEENELLSLGIRNFEYVIV 70 (134)
T ss_dssp CEEEECCSHHHHHHHHHHHHTTC-CCEEEESCHHHHHHTT----TTC----SEEEECCTTCTTHHHHHTGGGCSEEEE
T ss_pred EEEEECCCHHHHHHHHHHHHCCC-eEEEecCcHHHHHHHH----HhC----CcceeeecccchhhhccCCccccEEEE
Confidence 456677775 33 3445555677 69999999 6655543 222 4677788877531 1 57887775
|
| >d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Salicylic acid carboxyl methyltransferase (SAMT) domain: Salicylic acid carboxyl methyltransferase (SAMT) species: Clarkia breweri [TaxId: 36903]
Probab=80.92 E-value=0.77 Score=40.84 Aligned_cols=22 Identities=18% Similarity=0.167 Sum_probs=19.1
Q ss_pred hHHHHHHHHhccccCCeEEEcc
Q 016351 162 MFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 162 ~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
++..+|+.+.+-|+|||+++..
T Consensus 187 D~~~FL~~Ra~ELv~GG~mvl~ 208 (359)
T d1m6ex_ 187 DHALFLRCRAQEVVPGGRMVLT 208 (359)
T ss_dssp HHHHHHHHHHHHBCTTCEEEEE
T ss_pred HHHHHHHHHHHHhcCCcEEEEE
Confidence 5678999999999999999863
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=80.18 E-value=0.44 Score=40.34 Aligned_cols=55 Identities=22% Similarity=0.161 Sum_probs=38.1
Q ss_pred EEEEEcccccC--CCC-CcccEEEEcccccccc--------CcchHHHHHHHHhccccCCeEEEcc
Q 016351 129 VEVIEGSVEDI--VLP-EKVDVIISEWMGYFLL--------RESMFDSVICARDRWLKPTGVMYPS 183 (391)
Q Consensus 129 v~~i~~d~~~~--~~~-~~~D~Ivse~~~~~~~--------~e~~l~~~l~~~~~~L~~gG~ii~~ 183 (391)
-.++.+|..++ .++ +++|+|++++.-.... +...+...+.++.|+|+|+|.++..
T Consensus 5 ~~~~~~D~le~l~~l~d~SIDliitDPPYn~~~~~~~~~~~y~~~~~~~~~e~~rvLk~~G~~~~~ 70 (279)
T d1eg2a_ 5 HVYDVCDCLDTLAKLPDDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIF 70 (279)
T ss_dssp EEEEECCHHHHHHTSCTTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ceEEechHHHHHhhCcCCCccEEEECCCCCCCcccccCHHHHHHHHHHHHHHHHHHhCCCccEEEe
Confidence 35777888775 344 8899999988421111 1123566788899999999988754
|