Citrus Sinensis ID: 016396

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390
MRVALASTIKQNPLLLTISSFLYRPPTKTVSFRNIFTVNTTRNLGFLRCKATMSEQEPPRPVVVQVRDKIELTDTETKIFSCLLNTLRHFNLETVLRVAGGWVRDKLLGKDCYDIDIALDNMMGSEFATKVAEYLSATGETAPSGFGVIPSNPDQSKHLETATMKLYDLWIDFVNLRCEDYSENSRIPTMRFGTAEEDAYRRDLTINSLFYNINTSSVEDLTGRGIADLKHGKIVTPLPPKATFLDDPLRVLRAIRFGARFDFILDEELKKAAASDEVKAALAAKISRERVGTEIDLMVSGNQPVKAMTHICGLTLFWIVFKLPLQVEPEVLEGCEMFCTAYLDAAWDLTQLIGSSTFNDDQRRLSQYAALFLPFRNTTYKDNKGKKVLL
cHHHHHHHHcccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHcccccEEEEEccHHHHHHcccccccEEEEEcccccHHHHHHHHHHHHHccccccccEEEcccccccccEEEEEEEEEccEEEEEEEcccccccccccccccccccHHHHHHcccccHHHHccccccccEEccccccHHHHHcccccccccccccccccHHHHHHHHHHHHHccccccHHHHHHHHcHHHHHHHHccccHHHHHHHHHHHHccccHHHHHHHHHHccccHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHcccccccccccccccccc
ccHHHHHHHccccEEEccccccccccccccHHcccccccccccccccccccccccccccccccccccccEcccHHHHHHHHHHHHHHHHHccccEEEEEccHHHHHHccccccccEEEEccccHHHHHHHHHHHHHHccccccccEEEEcccccHcccEEEEEEEEcccEEEEEEccccccccccccccEEcccHHHHHHHcccEEHHHHEccccccEcccccccHHHHHcccEEccccccccccccHHHHHHHHHHHHHccccccHHHHHHHccHHHHHHHHHHccHHHHHHHHHHHHHcccHHHHHHHHHHcccccHHcccccHcccccccHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHcccccccccccccccEEcc
MRVALAStikqnpllLTISsflyrpptktvsfrniftvnttrnlgflrckatmseqepprpvvvQVRDKIELTDTETKIFSCLLNTLRHFNLETVLRVAggwvrdkllgkdcyDIDIALDNMMGSEFATKVAEYLSatgetapsgfgvipsnpdqskhLETATMKLYDLWIDFVNLRcedysensriptmrfgtaeedayrrdltINSLfynintssvedltgrgiadlkhgkivtplppkatflddpLRVLRAIRFGARFDFILDEELKKAAASDEVKAALAAKISRERVGTEIDlmvsgnqpvkaMTHICGLTLFWIVFKlplqvepevlEGCEMFCTAYLDAAWDLTQligsstfnddQRRLSQYAALFlpfrnttykdnkgkkvll
mrvalastikqnpllltISSFlyrpptktvsfrniftvnttrnlGFLRCKatmseqepprpvvvQVRDKIELTDTETKIFSCLLNTLRHFNLETVLRvaggwvrdkllgKDCYDIDIALDNMMGSEFATKVAEYLSATGETAPSGFGVIPSNPDQSKHLETATMKLYDLWIDFVNLRCEdysensriptmrfgtaeedayRRDLTINSLFYNINTSSVEDLTGRGIAdlkhgkivtplppkatflddpLRVLRAIRFGARFDFILDEELKKAAASDEVKAALAakisrervgTEIDLMVSGNQPVKAMTHICGLTLFWIVFKLPLQVEPEVLEGCEMFCTAYLDAAWDLTQLIGSSTFNDDQRRLSQYAAlflpfrnttykdnkgkkvll
MRVALASTIKQNPLLLTISSFLYRPPTKTVSFRNIFTVNTTRNLGFLRCKATMSeqepprpvvvqvrDKIELTDTETKIFSCLLNTLRHFNLETVLRVAGGWVRDKLLGKDCYDIDIALDNMMGSEFATKVAEYLSATGETAPSGFGVIPSNPDQSKHLETATMKLYDLWIDFVNLRCEDYSENSRIPTMRFGTAEEDAYRRDLTINSLFYNINTSSVEDLTGRGIADLKHGKIVTPLPPKATFLDDPLRVLRAIRFGARFDFILDEELKKAAASDEVKAALAAKISRERVGTEIDLMVSGNQPVKAMTHICGLTLFWIVFKLPLQVEPEVLEGCEMFCTAYLDAAWDLTQLIGSSTFNDDQRRLSQYAALFLPFRNTTYKDNKGKKVLL
*******TIKQNPLLLTISSFLYRPPTKTVSFRNIFTVNTTRNLGFLRCKAT********PVVVQVRDKIELTDTETKIFSCLLNTLRHFNLETVLRVAGGWVRDKLLGKDCYDIDIALDNMMGSEFATKVAEYLSATG********************ETATMKLYDLWIDFVNLRCEDYSENSRIPTMRFGTAEEDAYRRDLTINSLFYNINTSSVEDLTGRGIADLKHGKIVTPLPPKATFLDDPLRVLRAIRFGARFDFILDEELKKAAASDEVKAALAAKISRERVGTEIDLMVSGNQPVKAMTHICGLTLFWIVFKLPLQVEPEVLEGCEMFCTAYLDAAWDLTQLIGSSTFNDDQRRLSQYAALFLPFRNTTY**********
*************************************************************************DTETKIFSCLLNTLRHFNLETVLRVAGGWVRDKLLGKDCYDIDIALDNMMGSEFATKVAEYLSATGETAPSGFGVIPSNPDQSKHLETATMKLYDLWIDFVNLRCEDYSENSRIPTMRFGTAEEDAYRRDLTINSLFYNINTSSVEDLTGRGIADLKHGKIVTPLPPKATFLDDPLRVLRAIRFGARFDFILDEELKKAAASDEVKAALAAKISRERVGTEIDLMVSGNQPVKAMTHICGLTLFWIVFKLPLQVEPEVLEGCEMFCTAYLDAAWDLTQLIGSSTFNDDQRRLSQYAALFLPFRNTTYKDN*******
MRVALASTIKQNPLLLTISSFLYRPPTKTVSFRNIFTVNTTRNLGFLRCKATMSEQEPPRPVVVQVRDKIELTDTETKIFSCLLNTLRHFNLETVLRVAGGWVRDKLLGKDCYDIDIALDNMMGSEFATKVAEYLSATGETAPSGFGVIPSNPDQSKHLETATMKLYDLWIDFVNLRCEDYSENSRIPTMRFGTAEEDAYRRDLTINSLFYNINTSSVEDLTGRGIADLKHGKIVTPLPPKATFLDDPLRVLRAIRFGARFDFILDEELKKAAASDEVKAALAAKISRERVGTEIDLMVSGNQPVKAMTHICGLTLFWIVFKLPLQVEPEVLEGCEMFCTAYLDAAWDLTQLIGSSTFNDDQRRLSQYAALFLPFRNTTYKDNKGKKVLL
*RVALASTIKQNPLLLTISSFLYRPPT***************************************RDKIELTDTETKIFSCLLNTLRHFNLETVLRVAGGWVRDKLLGKDCYDIDIALDNMMGSEFATKVAEYLSATGETAPSGFGVIPSNPDQSKHLETATMKLYDLWIDFVNLRCEDYSENSRIPTMRFGTAEEDAYRRDLTINSLFYNINTSSVEDLTGRGIADLKHGKIVTPLPPKATFLDDPLRVLRAIRFGARFDFILDEELKKAAASDEVKAALAAKISRERVGTEIDLMVSGNQPVKAMTHICGLTLFWIVFKLPLQVEPEVLEGCEMFCTAYLDAAWDLTQLIGSSTFNDDQRRLSQYAALFLPFRNTTYKDNKG***LL
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooo
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MRVALASTIKQNPLLLTISSFLYRPPTKTVSFRNIFTVNTTRNLGFLRCKATMSEQEPPRPVVVQVRDKIELTDTETKIFSCLLNTLRHFNLETVLRVAGGWVRDKLLGKDCYDIDIALDNMMGSEFATKVAEYLSATGETAPSGFGVIPSNPDQSKHLETATMKLYDLWIDFVNLRCEDYSENSRIPTMRFGTAEEDAYRRDLTINSLFYNINTSSVEDLTGRGIADLKHGKIVTPLPPKATFLDDPLRVLRAIRFGARFDFILDEELKKAAASDEVKAALAAKISRERVGTEIDLMVSGNQPVKAMTHICGLTLFWIVFKLPLQVEPEVLEGCEMFCTAYLDAAWDLTQLIGSSTFNDDQRRLSQYAALFLPFRNTTYKDNKGKKVLL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query390 2.2.26 [Sep-21-2011]
Q9P4S5 531 CCA tRNA nucleotidyltrans yes no 0.641 0.470 0.473 8e-64
P21269 546 CCA tRNA nucleotidyltrans yes no 0.641 0.457 0.486 2e-63
Q9Y7U9 484 Putative CCA tRNA nucleot yes no 0.687 0.553 0.418 2e-55
Q9UTQ0 500 Putative CCA tRNA nucleot no no 0.715 0.558 0.404 8e-52
Q88W02 407 CCA-adding enzyme OS=Lact yes no 0.502 0.481 0.316 7e-15
Q03S97397 CCA-adding enzyme OS=Lact yes no 0.502 0.493 0.311 1e-13
A8FEH9 400 CCA-adding enzyme OS=Baci yes no 0.535 0.522 0.303 1e-13
Q1WU19 404 CCA-adding enzyme OS=Lact yes no 0.541 0.522 0.285 2e-13
Q03Y57 401 CCA-adding enzyme OS=Leuc yes no 0.479 0.466 0.315 3e-12
B2G721 403 CCA-adding enzyme OS=Lact yes no 0.502 0.486 0.284 5e-12
>sp|Q9P4S5|CCA1_CANGA CCA tRNA nucleotidyltransferase, mitochondrial OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=CCA1 PE=1 SV=2 Back     alignment and function desciption
 Score =  244 bits (623), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 125/264 (47%), Positives = 170/264 (64%), Gaps = 14/264 (5%)

Query: 69  KIELTDTETKIFSCLLNTLRHFNL------ETVLRVAGGWVRDKLLGKDCYDIDIALDNM 122
           +I+LT+ ET+I + L +   H+N          LR+ GGWVRDKLLG+  +D+DIA++ M
Sbjct: 14  RIQLTEKETRICNLLKDYTAHYNSLHYGQEPLTLRITGGWVRDKLLGQGSHDLDIAINIM 73

Query: 123 MGSEFATKVAEYLSATGE---TAPSGFGVIPSNPDQSKHLETATMKLYDLWIDFVNLRCE 179
            G EFAT +  YL    +     P     I  NP++SKHLETAT KL+D+ +DFVNLR E
Sbjct: 74  SGEEFATGLNGYLLEHFDKYGVKPHSIHKIDKNPEKSKHLETATTKLFDVEVDFVNLRSE 133

Query: 180 DYSENSRIPTMRFGTAEEDAYRRDLTINSLFYNINTSSVEDLTGRGIADLKHGKIVTPLP 239
           +Y+E+SRIPT +FGT EEDA RRD T+N+LFYNI   +VED T RG  DL+ G + TPLP
Sbjct: 134 EYTEDSRIPTTQFGTPEEDALRRDATLNALFYNIQQDAVEDFTKRGWQDLQDGVLRTPLP 193

Query: 240 PKATFLDDPLRVLRAIRFGARFDFILDEELKKAAASDEVKAALAAKISRERVGTEIDLMV 299
            + TFLDDPLRVLR IRF +RF+F ++  + K     E+  A   KISRER+G E++ ++
Sbjct: 194 ARQTFLDDPLRVLRLIRFASRFNFNIEAGVLKEMHDPEINEAFNNKISRERIGVEMEKIL 253

Query: 300 SGNQPVKAM-----THICGLTLFW 318
            G  P+  +     TH+  +   W
Sbjct: 254 VGPNPILGLKLIQRTHLENVIFLW 277
This enzyme carries out synthesis of the tRNA CCA terminus without the direction of a template using the multiple accepting and donating subsites within its active site.
Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) (taxid: 284593)
EC: 2EC: .EC: 7EC: .EC: 7EC: .EC: 7EC: 2
>sp|P21269|CCA1_YEAST CCA tRNA nucleotidyltransferase, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CCA1 PE=1 SV=1 Back     alignment and function description
>sp|Q9Y7U9|CCA2_SCHPO Putative CCA tRNA nucleotidyltransferase 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC645.10 PE=3 SV=1 Back     alignment and function description
>sp|Q9UTQ0|CCA1_SCHPO Putative CCA tRNA nucleotidyltransferase 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC1093.04c PE=3 SV=2 Back     alignment and function description
>sp|Q88W02|CCA_LACPL CCA-adding enzyme OS=Lactobacillus plantarum (strain ATCC BAA-793 / NCIMB 8826 / WCFS1) GN=cca PE=3 SV=1 Back     alignment and function description
>sp|Q03S97|CCA_LACBA CCA-adding enzyme OS=Lactobacillus brevis (strain ATCC 367 / JCM 1170) GN=cca PE=3 SV=1 Back     alignment and function description
>sp|A8FEH9|CCA_BACP2 CCA-adding enzyme OS=Bacillus pumilus (strain SAFR-032) GN=cca PE=3 SV=1 Back     alignment and function description
>sp|Q1WU19|CCA_LACS1 CCA-adding enzyme OS=Lactobacillus salivarius (strain UCC118) GN=cca PE=3 SV=1 Back     alignment and function description
>sp|Q03Y57|CCA_LEUMM CCA-adding enzyme OS=Leuconostoc mesenteroides subsp. mesenteroides (strain ATCC 8293 / NCDO 523) GN=cca PE=3 SV=1 Back     alignment and function description
>sp|B2G721|CCA_LACRJ CCA-adding enzyme OS=Lactobacillus reuteri (strain JCM 1112) GN=cca PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query390
255586471 577 poly(A) polymerase, putative [Ricinus co 0.976 0.660 0.709 1e-148
224135935 528 predicted protein [Populus trichocarpa] 0.861 0.636 0.754 1e-145
449446353 577 PREDICTED: CCA tRNA nucleotidyltransfera 0.938 0.634 0.681 1e-140
449528369 577 PREDICTED: CCA tRNA nucleotidyltransfera 0.841 0.568 0.737 1e-139
356576137 575 PREDICTED: CCA tRNA nucleotidyltransfera 0.830 0.563 0.733 1e-139
359493248 564 PREDICTED: CCA tRNA nucleotidyltransfera 0.925 0.640 0.677 1e-139
296081108 519 unnamed protein product [Vitis vinifera] 0.838 0.630 0.734 1e-138
1139585 560 tRNA nucleotidyltransferase [Lupinus alb 0.828 0.576 0.729 1e-138
297845288 603 hypothetical protein ARALYDRAFT_335508 [ 0.958 0.620 0.596 1e-122
147827432346 hypothetical protein VITISV_023390 [Viti 0.776 0.875 0.696 1e-121
>gi|255586471|ref|XP_002533879.1| poly(A) polymerase, putative [Ricinus communis] gi|223526180|gb|EEF28510.1| poly(A) polymerase, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  531 bits (1369), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 279/393 (70%), Positives = 309/393 (78%), Gaps = 12/393 (3%)

Query: 1   MRVALASTIKQNPLLLTISSFLYRPPTKTVSFRNIFTVNTTRNL-GFLR----CKATMSE 55
           MR  L + I   P+ L +   L R  T   +FRN F   T R L  FLR    C+A M  
Sbjct: 1   MRPYLNAAINLRPIQLLLPP-LLRSSTSAFAFRN-FRPETPRYLHSFLRRRFSCRA-MGT 57

Query: 56  QEPPRPVVVQVRDKIELTDTETKIFSCLLNTLRHFNLETVLRVAGGWVRDKLLGKDCYDI 115
             P    V+QV+DKIELT+ E KIF  LLNTLRHFNL+T LRVAGGWVRDKLLGKDCYDI
Sbjct: 58  STPQ--AVIQVKDKIELTEIEKKIFDRLLNTLRHFNLQTQLRVAGGWVRDKLLGKDCYDI 115

Query: 116 DIALDNMMGSEFATKVAEYLSATGETAPSGFGVIPSNPDQSKHLETATMKLYDLWIDFVN 175
           DIA+DNM+GSEF  KV EYL +TGE    G G+IP NPDQSKHLETA M+L+DLWIDFVN
Sbjct: 116 DIAIDNMLGSEFVDKVREYLLSTGEEV-GGLGIIPRNPDQSKHLETARMRLFDLWIDFVN 174

Query: 176 LRCEDYSENSRIPTMRFGTAEEDAYRRDLTINSLFYNINTSSVEDLTGRGIADLKHGKIV 235
           LRCEDY+E+SRIPTM+FGTAEEDA+RRDLTINSLFYNINTSSVEDLT RGI DLK GKIV
Sbjct: 175 LRCEDYTEDSRIPTMKFGTAEEDAFRRDLTINSLFYNINTSSVEDLTERGIEDLKFGKIV 234

Query: 236 TPLPPKATFLDDPLRVLRAIRFGARFDFILDEELKKAAASDEVKAALAAKISRERVGTEI 295
           TPLPPKATFLDDPLRVLRAIRFGARF FILDEELK+AAA D+VK ALAAKIS+ER+G EI
Sbjct: 235 TPLPPKATFLDDPLRVLRAIRFGARFGFILDEELKEAAACDDVKNALAAKISKERIGNEI 294

Query: 296 DLMVSGNQPVKAMTHICGLTLFWIVFKLPLQVEPEVLEGCEMFCTAYLDAAWDLTQLIGS 355
           DLM+SGNQPVKAMT+I  LTLFWI+F LP +VEP V EGC   C AYLDA W+L Q I S
Sbjct: 295 DLMLSGNQPVKAMTYIGDLTLFWIIFGLPPKVEPAVSEGCHKLCIAYLDATWNLIQSIRS 354

Query: 356 STFNDDQRRLSQYAALFLPFRNTTYKDNKGKKV 388
           S F D+QRRLS YAALFLPFRN  Y + KGK V
Sbjct: 355 SFFTDEQRRLSLYAALFLPFRNIIYIE-KGKNV 386

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224135935|ref|XP_002327340.1| predicted protein [Populus trichocarpa] gi|222835710|gb|EEE74145.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449446353|ref|XP_004140936.1| PREDICTED: CCA tRNA nucleotidyltransferase, mitochondrial-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449528369|ref|XP_004171177.1| PREDICTED: CCA tRNA nucleotidyltransferase, mitochondrial-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356576137|ref|XP_003556190.1| PREDICTED: CCA tRNA nucleotidyltransferase, mitochondrial-like [Glycine max] Back     alignment and taxonomy information
>gi|359493248|ref|XP_002266551.2| PREDICTED: CCA tRNA nucleotidyltransferase, mitochondrial [Vitis vinifera] Back     alignment and taxonomy information
>gi|296081108|emb|CBI18302.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|1139585|gb|AAB03077.1| tRNA nucleotidyltransferase [Lupinus albus] Back     alignment and taxonomy information
>gi|297845288|ref|XP_002890525.1| hypothetical protein ARALYDRAFT_335508 [Arabidopsis lyrata subsp. lyrata] gi|297336367|gb|EFH66784.1| hypothetical protein ARALYDRAFT_335508 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|147827432|emb|CAN68616.1| hypothetical protein VITISV_023390 [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query390
TAIR|locus:2199675 605 AT1G22660 [Arabidopsis thalian 0.820 0.528 0.660 7e-109
DICTYBASE|DDB_G0293504 558 DDB_G0293504 "tRNA nucleotidyl 0.807 0.564 0.481 7.2e-68
SGD|S000000970 546 CCA1 "ATP (CTP):tRNA-specific 0.641 0.457 0.486 2.2e-57
ASPGD|ASPL0000066964 605 AN10924 [Emericella nidulans ( 0.6 0.386 0.508 2e-56
CGD|CAL0004347 547 orf19.4705 [Candida albicans ( 0.8 0.570 0.390 4.2e-56
POMBASE|SPCC645.10 484 SPCC645.10 "ATP(CTP) tRNA nucl 0.789 0.636 0.391 3.8e-53
GENEDB_PFALCIPARUM|PF11_0212 791 PF11_0212 "hypothetical protei 0.605 0.298 0.468 6.4e-51
UNIPROTKB|Q8IIG2 791 PF11_0212 "tRNA nucleotidyltra 0.605 0.298 0.468 6.4e-51
POMBASE|SPAC1093.04c 500 SPAC1093.04c "tRNA nucleotidyl 0.715 0.558 0.404 2.9e-48
DICTYBASE|DDB_G0271378 542 DDB_G0271378 [Dictyostelium di 0.469 0.337 0.338 2.9e-33
TAIR|locus:2199675 AT1G22660 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1076 (383.8 bits), Expect = 7.0e-109, P = 7.0e-109
 Identities = 212/321 (66%), Positives = 249/321 (77%)

Query:    68 DKIELTDTETKIFSCLLNTLRHFNLETVLRVAGGWVRDKLLGKDCYDIDIALDNMMGSEF 127
             + IELTD E KIF  LL+TLR+ NL+T LRVAGGWVRDKLLGK+  DIDIA+DNM GSEF
Sbjct:    82 ENIELTDKERKIFDRLLSTLRYCNLDTQLRVAGGWVRDKLLGKESDDIDIAIDNMSGSEF 141

Query:   128 ATKVAEYLSATGETAPSGFGVIPSNPDQSKHLETATMKLYDLWIDFVNLRCEDYSENSRI 187
               K  EYLS+  E    G  VI  NPDQSKHLETA +++YD WIDFVNLR E+Y+ENSRI
Sbjct:   142 LDKFKEYLSSRDEEV-QGDTVIERNPDQSKHLETAKLRIYDQWIDFVNLRSEEYTENSRI 200

Query:   188 PTMRFGTAEEDAYRRDLTINSLFYNINTSSVEDLTGRGIADLKHGKIVTPLPPKATFLDD 247
             PTM+FGTA++DA+RRDLTINSLFYNIN+ +VEDLT RGI DLK GKIVTPLP KATFLDD
Sbjct:   201 PTMKFGTAKDDAFRRDLTINSLFYNINSGAVEDLTERGIDDLKSGKIVTPLPAKATFLDD 260

Query:   248 PLRVLRAIRFGARFDFILDEELKKAAASDEVKAALAAKISRERVGTEIDLMVSGNQPVKA 307
             PLRVLRA+RFGARF F LDEELK+AA+S+EV+ AL  KISRER+G EIDLM+SGN PV A
Sbjct:   261 PLRVLRAVRFGARFGFTLDEELKEAASSEEVRVALGEKISRERIGNEIDLMISGNGPVSA 320

Query:   308 MTHICGLTLFWIVFKLPLQVEPEVLEGCEMFCTAYLDAAWDLTQLIGSSTFNDDQRRLSQ 367
             +T++  L LF +VF LP   EP   E C     +YL+A W L +      F+ +QRRL+ 
Sbjct:   321 VTYLSDLKLFSVVFALPSSAEPSPPENCGSLSQSYLEAMWSLLKTPRPGKFSGEQRRLAL 380

Query:   368 YAALFLPFRNTTYKDNKGKKV 388
             YAA+FLPFR T YKD KGK +
Sbjct:   381 YAAMFLPFRKTVYKDTKGKSI 401
GO:0003723 "RNA binding" evidence=IEA
GO:0004810 "tRNA adenylyltransferase activity" evidence=ISS
GO:0006396 "RNA processing" evidence=IEA
GO:0008033 "tRNA processing" evidence=ISS
GO:0009507 "chloroplast" evidence=ISM
GO:0016779 "nucleotidyltransferase activity" evidence=IEA
GO:0005739 "mitochondrion" evidence=IDA
GO:0009630 "gravitropism" evidence=RCA
DICTYBASE|DDB_G0293504 DDB_G0293504 "tRNA nucleotidyltransferase" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
SGD|S000000970 CCA1 "ATP (CTP):tRNA-specific tRNA nucleotidyltransferase" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms
ASPGD|ASPL0000066964 AN10924 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
CGD|CAL0004347 orf19.4705 [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms
POMBASE|SPCC645.10 SPCC645.10 "ATP(CTP) tRNA nucleotidyltransferase (predicted)" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
GENEDB_PFALCIPARUM|PF11_0212 PF11_0212 "hypothetical protein" [Plasmodium falciparum (taxid:5833)] Back     alignment and assigned GO terms
UNIPROTKB|Q8IIG2 PF11_0212 "tRNA nucleotidyltransferase, putative" [Plasmodium falciparum 3D7 (taxid:36329)] Back     alignment and assigned GO terms
POMBASE|SPAC1093.04c SPAC1093.04c "tRNA nucleotidyltransferase (predicted)" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0271378 DDB_G0271378 [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.7.70.691
4th Layer2.7.7.21LOW CONFIDENCE prediction!
4th Layer2.7.7.25LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query390
COG0617 412 COG0617, PcnB, tRNA nucleotidyltransferase/poly(A) 2e-45
cd05398139 cd05398, NT_ClassII-CCAase, Nucleotidyltransferase 9e-40
pfam01743126 pfam01743, PolyA_pol, Poly A polymerase head domai 1e-33
TIGR02692 466 TIGR02692, tRNA_CCA_actino, tRNA adenylyltransfera 2e-21
TIGR01942 410 TIGR01942, pcnB, poly(A) polymerase 7e-20
PRK13299394 PRK13299, PRK13299, tRNA CCA-pyrophosphorylase; Pr 2e-18
PRK11623 472 PRK11623, pcnB, poly(A) polymerase I; Provisional 8e-17
PRK10885 409 PRK10885, cca, multifunctional tRNA nucleotidyl tr 2e-11
PRK13298 417 PRK13298, PRK13298, tRNA CCA-pyrophosphorylase; Pr 6e-09
PRK13296360 PRK13296, PRK13296, tRNA CCA-pyrophosphorylase; Pr 9e-06
PRK13297364 PRK13297, PRK13297, tRNA CCA-pyrophosphorylase; Pr 7e-04
>gnl|CDD|223690 COG0617, PcnB, tRNA nucleotidyltransferase/poly(A) polymerase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information 
 Score =  161 bits (409), Expect = 2e-45
 Identities = 73/227 (32%), Positives = 104/227 (45%), Gaps = 24/227 (10%)

Query: 96  LRVAGGWVRDKLLGKDCYDIDIALDNMMGSEFATKVAEYLSATGETAPSGFGVIPSNPDQ 155
             + GG VRD LLG+   D+DIA +     E   K+       G      FG + + P  
Sbjct: 25  AYLVGGAVRDLLLGRPPKDVDIATNAT--PEEVKKLFRNTRPVGR----KFGTV-TVPFN 77

Query: 156 SKHLETATMKLYDLWIDFVNLRCEDYSENSRI-PTMRFGTAEEDAYRRDLTINSLFYNIN 214
            + +E  T             R E Y  N R  P +  GT EED  RRD TIN+L Y+  
Sbjct: 78  GEIIEVTT------------FRKEGYGYNGRPLPVVFPGTLEEDLKRRDFTINALAYDPE 125

Query: 215 TSSVEDLTGRGIADLKHGKIVTPLPPKATFLDDPLRVLRAIRFGARFDFILDEELKKAAA 274
              + D  G G+ DL++  +         F +DPLR+LRA RF AR  F ++ E ++A  
Sbjct: 126 DGEIIDPFG-GLKDLENRVLRHIGDASERFREDPLRILRAARFAARLGFTIEPETEEAIR 184

Query: 275 SDEVKAALAAKISRERVGTEIDLMVSGNQPVKAMTHICGLTLFWIVF 321
                A L AKISRER+  E+  ++    P +A+  +       I+F
Sbjct: 185 L---MAPLLAKISRERLWDELKKLLLSPNPREALQLLREYGALKILF 228

Length = 412
>gnl|CDD|143388 cd05398, NT_ClassII-CCAase, Nucleotidyltransferase (NT) domain of ClassII CCA-adding enzymes Back     alignment and domain information
>gnl|CDD|216675 pfam01743, PolyA_pol, Poly A polymerase head domain Back     alignment and domain information
>gnl|CDD|131739 TIGR02692, tRNA_CCA_actino, tRNA adenylyltransferase Back     alignment and domain information
>gnl|CDD|130997 TIGR01942, pcnB, poly(A) polymerase Back     alignment and domain information
>gnl|CDD|237339 PRK13299, PRK13299, tRNA CCA-pyrophosphorylase; Provisional Back     alignment and domain information
>gnl|CDD|236939 PRK11623, pcnB, poly(A) polymerase I; Provisional Back     alignment and domain information
>gnl|CDD|182810 PRK10885, cca, multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase; Reviewed Back     alignment and domain information
>gnl|CDD|237338 PRK13298, PRK13298, tRNA CCA-pyrophosphorylase; Provisional Back     alignment and domain information
>gnl|CDD|106256 PRK13296, PRK13296, tRNA CCA-pyrophosphorylase; Provisional Back     alignment and domain information
>gnl|CDD|139469 PRK13297, PRK13297, tRNA CCA-pyrophosphorylase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 390
TIGR02692 466 tRNA_CCA_actino tRNA adenylyltransferase. The enzy 100.0
KOG2159416 consensus tRNA nucleotidyltransferase/poly(A) poly 100.0
PRK11623 472 pcnB poly(A) polymerase I; Provisional 100.0
TIGR01942 410 pcnB poly(A) polymerase. This model describes the 100.0
PRK13299 394 tRNA CCA-pyrophosphorylase; Provisional 100.0
PRK13298 417 tRNA CCA-pyrophosphorylase; Provisional 100.0
COG0617 412 PcnB tRNA nucleotidyltransferase/poly(A) polymeras 100.0
PRK10885 409 cca multifunctional tRNA nucleotidyl transferase/2 100.0
PRK13297364 tRNA CCA-pyrophosphorylase; Provisional 100.0
PRK13296360 tRNA CCA-pyrophosphorylase; Provisional 100.0
cd05398139 NT_ClassII-CCAase Nucleotidyltransferase (NT) doma 100.0
PF01743126 PolyA_pol: Poly A polymerase head domain; InterPro 100.0
PHA01806200 hypothetical protein 99.81
PRK03381 774 PII uridylyl-transferase; Provisional 99.64
PRK00227 693 glnD PII uridylyl-transferase; Provisional 99.63
TIGR01693 850 UTase_glnD [Protein-PII] uridylyltransferase. This 99.62
PRK00275 895 glnD PII uridylyl-transferase; Provisional 99.57
PRK03059 856 PII uridylyl-transferase; Provisional 99.55
PRK05092 931 PII uridylyl-transferase; Provisional 99.5
PRK01759 854 glnD PII uridylyl-transferase; Provisional 99.43
PRK05007 884 PII uridylyl-transferase; Provisional 99.33
PF1262764 PolyA_pol_RNAbd: Probable RNA and SrmB- binding si 99.19
PRK04374 869 PII uridylyl-transferase; Provisional 99.1
COG2844 867 GlnD UTP:GlnB (protein PII) uridylyltransferase [P 98.35
PF06042163 DUF925: Bacterial protein of unknown function (DUF 96.06
cd05402114 NT_PAP_TUTase Nucleotidyltransferase (NT) domain o 95.1
COG3575184 Uncharacterized protein conserved in bacteria [Fun 94.98
cd07749156 NT_Pol-beta-like_1 Nucleotidyltransferase (NT) dom 94.33
PF10706174 Aminoglyc_resit: Aminoglycoside-2''-adenylyltransf 92.81
cd0539749 NT_Pol-beta-like Nucleotidyltransferase (NT) domai 92.46
PF09970181 DUF2204: Nucleotidyl transferase of unknown functi 90.22
PF14792112 DNA_pol_B_palm: DNA polymerase beta palm ; PDB: 1R 88.84
COG1078 421 HD superfamily phosphohydrolases [General function 83.82
TIGR03671408 cca_archaeal CCA-adding enzyme. 82.92
PRK13300 447 tRNA CCA-pyrophosphorylase; Provisional 82.14
PRK13480 314 3'-5' exoribonuclease YhaM; Provisional 80.91
>TIGR02692 tRNA_CCA_actino tRNA adenylyltransferase Back     alignment and domain information 
Probab=100.00  E-value=5.1e-58  Score=474.41  Aligned_cols=277  Identities=27%  Similarity=0.364  Sum_probs=225.2

Q ss_pred             HHHHHHHHHHhcCCCceEEEEcchhhhhhhCCCCCCeEEEEcCCChHHHHHHHHHHHHhcCCcCCCceEEecCCCCCCce
Q 016396           79 IFSCLLNTLRHFNLETVLRVAGGWVRDKLLGKDCYDIDIALDNMMGSEFATKVAEYLSATGETAPSGFGVIPSNPDQSKH  158 (390)
Q Consensus        79 i~~~l~~~l~~~~~~~~~ylVGG~VRD~LLg~~~~DiDia~~~~~~~~f~~~l~~~l~~~g~~~~~~~~vi~~n~~~~~~  158 (390)
                      .+..+.+.+++.  |+++|+|||||||+|||++|+|+||+|++. ++++.+    .+...+..      ++..    ++.
T Consensus        15 ~~~~i~~~l~~~--g~~~y~VGG~VRD~llg~~~~D~Di~~~~~-~~~~~~----~~~~~~~~------~~~~----g~~   77 (466)
T TIGR02692        15 LLAPLAAAFAAA--GHELYLVGGSVRDALLGRLGHDLDFTTDAR-PEETLA----ILRPWADA------VWDT----GIA   77 (466)
T ss_pred             HHHHHHHHHHhC--CCEEEEeCcHHHHHHcCCCCCCEEEEeCCC-HHHHHH----HHHHhhhh------cccc----Ccc
Confidence            444456666666  478999999999999999999999999985 555444    34322211      1111    345


Q ss_pred             eeEEEEEEcCEEEEeeecccccccCCCCCcccccC-CHHHHHhcCCCCccceeeecCCC---ceecCccccHHHhhCCCe
Q 016396          159 LETATMKLYDLWIDFVNLRCEDYSENSRIPTMRFG-TAEEDAYRRDLTINSLFYNINTS---SVEDLTGRGIADLKHGKI  234 (390)
Q Consensus       159 ~~t~~~~~~~~~iD~~~~R~e~y~~~~r~P~v~~g-ti~eDl~RRDFTINAla~~l~~~---~i~D~~g~G~~DL~~~~I  234 (390)
                      ++|+++..+|..+||+++|+|.|..+++.|+|+++ ++++||.||||||||||||++++   .++||+| |++||++|+|
T Consensus        78 ~g~~~v~~~~~~~ei~~~r~e~~~~~~~~~~v~~~~~i~~Dl~rRDFTiNA~a~~~~~~~~g~l~D~~~-G~~Dl~~~~i  156 (466)
T TIGR02692        78 FGTVGAEKDGQQIEITTFRSDSYDGTSRKPEVTFGDTLEGDLIRRDFTVNAMAVRIPADGSLEFHDPVG-GLDDLLAKVL  156 (466)
T ss_pred             cceEEEEECCcEEEEEecccccCcCCCCCCcccCCCCHHHHHHhccccHHHhhccccCCCCceeecCCC-cHHHHhCCce
Confidence            79999999999999999999999999999999986 89999999999999999999865   8999998 9999999999


Q ss_pred             ecCCCCCcccccChhhHHHHHHHHhhcCCCCcHHHHHHhhcHHHHHHHhccCCHHHHHHHHHHHhcCCCHHHHHHHHHHc
Q 016396          235 VTPLPPKATFLDDPLRVLRAIRFGARFDFILDEELKKAAASDEVKAALAAKISRERVGTEIDLMVSGNQPVKAMTHICGL  314 (390)
Q Consensus       235 R~v~~p~~~F~eDPlRILRa~Rfaarlgf~Id~~T~~ai~~~~~~~~Ll~~vs~ERI~~El~kiL~~~~~~~~L~lL~~~  314 (390)
                      |++++|.++|.|||+|||||+|||+++||+|+++|+++|+..   ..++..+|.|||+.||.|+|.++++..+++.|+++
T Consensus       157 r~v~~~~~~f~eDPlRiLRa~Rfaa~lgf~i~~~T~~~i~~~---~~~l~~i~~eRi~~E~~kil~~~~~~~~l~~l~~~  233 (466)
T TIGR02692       157 DTPATPEQSFGDDPLRMLRAARFVSQLGFEVAPRVRAAMTEM---ADQIERISAERVRVELDKLLLGDHPRAGIDLMVET  233 (466)
T ss_pred             EecCChHHhhhhChHHHHHHHHHHHHhCCCcCHHHHHHHHHH---HHHHhcCCHHHHHHHHHHHHcCCCcHHHHHHHHhh
Confidence            999999999999999999999999999999999999999865   34567899999999999999999999999999999


Q ss_pred             CcchHHhcCCCCCCcchhhhhhhcccchHHHHHHHHHHhcCC-CCCcccch-hHHHHhhhccccCceee
Q 016396          315 TLFWIVFKLPLQVEPEVLEGCEMFCTAYLDAAWDLTQLIGSS-TFNDDQRR-LSQYAALFLPFRNTTYK  381 (390)
Q Consensus       315 glL~~if~~Pe~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~-l~llAaLlhp~gk~~~~  381 (390)
                      |+|..+|  ||+..... .+  ..+.++.+.+.|++.++... .+...... ...|||||||+||+.+.
T Consensus       234 glL~~~~--Pe~~~~~~-~~--~~~~h~~~v~~Htl~vl~~~~~l~~~~~~~~l~lAaLLHDiGK~~t~  297 (466)
T TIGR02692       234 GLADRVL--PEIPALRL-EI--DEHHQHKDVYEHSLTVLRQAIDLEDDGPDLVLRWAALLHDIGKPATR  297 (466)
T ss_pred             hhhhhcC--chHHHHhc-cc--ccCCCCCcHHHHHHHHHHHHHhccccccCHHHHHHHHHhhccCCCCc
Confidence            9999999  99644331 11  12334467777888776521 11112222 34599999999999763

The enzyme tRNA adenylyltransferase, also called tRNA-nucleotidyltransferase and CCA-adding enzyme, can add or repair the required CCA triplet at the 3'-end of tRNA molecules. Genes encoding tRNA include the CCA tail in some but not all bacteria, and this enzyme may be required for viability. Members of this family represent a distinct clade within the larger family pfam01743 (tRNA nucleotidyltransferase/poly(A) polymerase family protein). The example from Streptomyces coelicolor was shown to act as a CCA-adding enzyme and not as a poly(A) polymerase.
>KOG2159 consensus tRNA nucleotidyltransferase/poly(A) polymerase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK11623 pcnB poly(A) polymerase I; Provisional Back     alignment and domain information
>TIGR01942 pcnB poly(A) polymerase Back     alignment and domain information
>PRK13299 tRNA CCA-pyrophosphorylase; Provisional Back     alignment and domain information
>PRK13298 tRNA CCA-pyrophosphorylase; Provisional Back     alignment and domain information
>COG0617 PcnB tRNA nucleotidyltransferase/poly(A) polymerase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK10885 cca multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase; Reviewed Back     alignment and domain information
>PRK13297 tRNA CCA-pyrophosphorylase; Provisional Back     alignment and domain information
>PRK13296 tRNA CCA-pyrophosphorylase; Provisional Back     alignment and domain information
>cd05398 NT_ClassII-CCAase Nucleotidyltransferase (NT) domain of ClassII CCA-adding enzymes Back     alignment and domain information
>PF01743 PolyA_pol: Poly A polymerase head domain; InterPro: IPR002646 This group includes nucleic acid independent RNA polymerases, such as polynucleotide adenylyltransferase (2 Back     alignment and domain information
>PHA01806 hypothetical protein Back     alignment and domain information
>PRK03381 PII uridylyl-transferase; Provisional Back     alignment and domain information
>PRK00227 glnD PII uridylyl-transferase; Provisional Back     alignment and domain information
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase Back     alignment and domain information
>PRK00275 glnD PII uridylyl-transferase; Provisional Back     alignment and domain information
>PRK03059 PII uridylyl-transferase; Provisional Back     alignment and domain information
>PRK05092 PII uridylyl-transferase; Provisional Back     alignment and domain information
>PRK01759 glnD PII uridylyl-transferase; Provisional Back     alignment and domain information
>PRK05007 PII uridylyl-transferase; Provisional Back     alignment and domain information
>PF12627 PolyA_pol_RNAbd: Probable RNA and SrmB- binding site of polymerase A; PDB: 1OU5_B 3H38_A 3H3A_B 3H39_B 3H37_A 3AQN_A 3AQK_A 3AQM_B 3AQL_B 1MIY_A Back     alignment and domain information
>PRK04374 PII uridylyl-transferase; Provisional Back     alignment and domain information
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF06042 DUF925: Bacterial protein of unknown function (DUF925); InterPro: IPR009267 This entry consists of several hypothetical bacterial proteins of unknown function Back     alignment and domain information
>cd05402 NT_PAP_TUTase Nucleotidyltransferase (NT) domain of poly(A) polymerases and terminal uridylyl transferases Back     alignment and domain information
>COG3575 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>cd07749 NT_Pol-beta-like_1 Nucleotidyltransferase (NT) domain of an uncharacterized subgroup of the Pol beta-like NT superfamily Back     alignment and domain information
>PF10706 Aminoglyc_resit: Aminoglycoside-2''-adenylyltransferase; InterPro: IPR019646 Aminoglycoside-2''-adenylyltransferase is conserved in Bacteria Back     alignment and domain information
>cd05397 NT_Pol-beta-like Nucleotidyltransferase (NT) domain of DNA polymerase beta and similar proteins Back     alignment and domain information
>PF09970 DUF2204: Nucleotidyl transferase of unknown function (DUF2204); InterPro: IPR018700 This family of hypothetical prokaryotic proteins has no known function Back     alignment and domain information
>PF14792 DNA_pol_B_palm: DNA polymerase beta palm ; PDB: 1RZT_A 3PML_A 2PFN_A 3HX0_K 3HWT_A 2GWS_E 2BCQ_A 3UPQ_A 2BCS_A 3UQ2_A Back     alignment and domain information
>COG1078 HD superfamily phosphohydrolases [General function prediction only] Back     alignment and domain information
>TIGR03671 cca_archaeal CCA-adding enzyme Back     alignment and domain information
>PRK13300 tRNA CCA-pyrophosphorylase; Provisional Back     alignment and domain information
>PRK13480 3'-5' exoribonuclease YhaM; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query390
3h38_A 441 The Structure Of Cca-Adding Enzyme Apo Form Ii Leng 2e-17
3h37_A 441 The Structure Of Cca-Adding Enzyme Apo Form I Lengt 8e-17
1vfg_A390 Crystal Structure Of Trna Nucleotidyltransferase Co 6e-16
3aqm_A415 Structure Of Bacterial Protein (Form Ii) Length = 4 3e-12
3aql_A415 Structure Of Bacterial Protein (Apo Form Ii) Length 3e-12
3aqk_A414 Structure Of Bacterial Protein (Apo Form I) Length 3e-12
1ou5_A448 Crystal Structure Of Human Cca-Adding Enzyme Length 6e-11
1miy_A 404 Crystal Structure Of Bacillus Stearothermophilus Cc 3e-07
1miv_A 404 Crystal Structure Of Bacillus Stearothermophilus Cc 9e-06
>pdb|3H38|A Chain A, The Structure Of Cca-Adding Enzyme Apo Form Ii Length = 441 Back     alignment and structure 
Iteration: 1

 Score = 87.0 bits (214), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 69/228 (30%), Positives = 107/228 (46%), Gaps = 23/228 (10%)
Query: 98  VAGGWVRDKLLGKDCYDIDIALDNMMGSEFATKVAEYLSATGETAPSGFGVIPSNPDQSK 157
           V GG+VRD LLG    DIDI ++       A + AEY              +P    +  
Sbjct: 39  VVGGFVRDLLLGIKNLDIDIVVEGN-----ALEFAEYAKR----------FLPGKLVKHD 83
Query: 158 HLETATMKLYD-LWIDFVNLRCEDYSENSRIPTMRFGTAEEDAYRRDLTINSLFYNINTS 216
              TA++ L   L ID    R E Y   +++P +   T ++D YRRD TIN++   +N  
Sbjct: 84  KFMTASLFLKGGLRIDIATARLEYYESPAKLPDVEMSTIKKDLYRRDFTINAMAIKLNPK 143
Query: 217 S---VEDLTGRGIADLKHGKIVTPLPPKATFLDDPLRVLRAIRFGARFDFILDEELKKAA 273
               + D  G G  DLK G  V  +    +F+DDP R+LRAIRF  RFDF + EE  +  
Sbjct: 144 DFGLLIDFFG-GYRDLKEG--VIRVLHTLSFVDDPTRILRAIRFEQRFDFRI-EETTERL 199
Query: 274 ASDEVKAALAAKISRERVGTEIDLMVSGNQPVKAMTHICGLTLFWIVF 321
               V+     + +  R+  E++ ++    P+K++  +    +   +F
Sbjct: 200 LKQAVEEGYLERTTGPRLRQELEKILEEKNPLKSIRRMAQFDVIKHLF 247
>pdb|3H37|A Chain A, The Structure Of Cca-Adding Enzyme Apo Form I Length = 441 Back     alignment and structure
>pdb|1VFG|A Chain A, Crystal Structure Of Trna Nucleotidyltransferase Complexed With A Primer Trna And An Incoming Atp Analog Length = 390 Back     alignment and structure
>pdb|3AQM|A Chain A, Structure Of Bacterial Protein (Form Ii) Length = 415 Back     alignment and structure
>pdb|3AQL|A Chain A, Structure Of Bacterial Protein (Apo Form Ii) Length = 415 Back     alignment and structure
>pdb|3AQK|A Chain A, Structure Of Bacterial Protein (Apo Form I) Length = 414 Back     alignment and structure
>pdb|1OU5|A Chain A, Crystal Structure Of Human Cca-Adding Enzyme Length = 448 Back     alignment and structure
>pdb|1MIY|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Cca-adding Enzyme In Complex With Ctp Length = 404 Back     alignment and structure
>pdb|1MIV|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Cca-Adding Enzyme Length = 404 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query390
3h38_A 441 TRNA nucleotidyl transferase-related protein; tran 2e-45
1vfg_A390 A-adding enzyme, poly A polymerase; transferase, R 1e-44
1miw_A 404 TRNA CCA-adding enzyme; tRNA nucleotidyltransferas 7e-37
3aql_A415 Poly(A) polymerase; transferase/RNA, ATP-binding, 8e-33
1ou5_A448 TRNA CCA-adding enzyme, tRNA-nucleotidyltransferas 1e-28
>3h38_A TRNA nucleotidyl transferase-related protein; transferase/RNA, nucleotide-binding, RNA-binding; 2.37A {Thermotoga maritima} PDB: 3h37_A 3h39_A* 3h3a_A* Length = 441 Back     alignment and structure
 Score =  161 bits (408), Expect = 2e-45
 Identities = 68/228 (29%), Positives = 104/228 (45%), Gaps = 23/228 (10%)

Query: 98  VAGGWVRDKLLGKDCYDIDIALDNMMGSEFATKVAEYLSATGETAPSGFGVIPSNPDQSK 157
           V GG+VRD LLG    DIDI ++     EFA     +L          F           
Sbjct: 39  VVGGFVRDLLLGIKNLDIDIVVEGN-ALEFAEYAKRFLPGKLVKHDK-FM---------- 86

Query: 158 HLETATMKLYD-LWIDFVNLRCEDYSENSRIPTMRFGTAEEDAYRRDLTINSLFYNINTS 216
              TA++ L   L ID    R E Y   +++P +   T ++D YRRD TIN++   +N  
Sbjct: 87  ---TASLFLKGGLRIDIATARLEYYESPAKLPDVEMSTIKKDLYRRDFTINAMAIKLNPK 143

Query: 217 SVE---DLTGRGIADLKHGKIVTPLPPKATFLDDPLRVLRAIRFGARFDFILDEELKKAA 273
                 D  G G  DLK G I        +F+DDP R+LRAIRF  RFDF ++E  ++  
Sbjct: 144 DFGLLIDFFG-GYRDLKEGVIRV--LHTLSFVDDPTRILRAIRFEQRFDFRIEETTER-L 199

Query: 274 ASDEVKAALAAKISRERVGTEIDLMVSGNQPVKAMTHICGLTLFWIVF 321
               V+     + +  R+  E++ ++    P+K++  +    +   +F
Sbjct: 200 LKQAVEEGYLERTTGPRLRQELEKILEEKNPLKSIRRMAQFDVIKHLF 247
>1vfg_A A-adding enzyme, poly A polymerase; transferase, RNA, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: APC; 2.80A {Aquifex aeolicus} SCOP: a.173.1.1 d.218.1.4 Length = 390 Back     alignment and structure
>1miw_A TRNA CCA-adding enzyme; tRNA nucleotidyltransferase, translation, transferase; HET: ATP; 3.00A {Geobacillus stearothermophilus} SCOP: a.173.1.1 d.218.1.4 PDB: 1miv_A* 1miy_A* Length = 404 Back     alignment and structure
>3aql_A Poly(A) polymerase; transferase/RNA, ATP-binding, nucleotide-binding, RNA-bindin transferase, nucleotidyltransferase, ATP binding, A-phospho; 3.00A {Escherichia coli} PDB: 3aqn_A* 3aqk_A 3aqm_A Length = 415 Back     alignment and structure
>1ou5_A TRNA CCA-adding enzyme, tRNA-nucleotidyltransferase; polymerase, translation; 3.40A {Homo sapiens} SCOP: a.173.1.1 d.218.1.4 Length = 448 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query390
3h38_A 441 TRNA nucleotidyl transferase-related protein; tran 100.0
1vfg_A 390 A-adding enzyme, poly A polymerase; transferase, R 100.0
1ou5_A 448 TRNA CCA-adding enzyme, tRNA-nucleotidyltransferas 100.0
1miw_A 404 TRNA CCA-adding enzyme; tRNA nucleotidyltransferas 100.0
3aql_A 415 Poly(A) polymerase; transferase/RNA, ATP-binding, 100.0
2la3_A191 Uncharacterized protein; ATP binding, CTP binding, 96.39
4e8j_A161 Lincosamide resistance protein; structural genomic 93.45
2fcl_A169 Hypothetical protein TM1012; putative nucleotidylt 91.73
3nyb_A323 Poly(A) RNA polymerase protein 2; polya RNA polyme 90.64
>3h38_A TRNA nucleotidyl transferase-related protein; transferase/RNA, nucleotide-binding, RNA-binding; 2.37A {Thermotoga maritima} PDB: 3h37_A 3h39_A* 3h3a_A* Back     alignment and structure
Probab=100.00  E-value=9.5e-57  Score=459.62  Aligned_cols=235  Identities=30%  Similarity=0.489  Sum_probs=207.3

Q ss_pred             eecChhhHHHHHHHHHHHHhcCCCceEEEEcchhhhhhhCCCCCCeEEEEcCCChHHHHHHHHHHHHhcCCcCCCceEEe
Q 016396           70 IELTDTETKIFSCLLNTLRHFNLETVLRVAGGWVRDKLLGKDCYDIDIALDNMMGSEFATKVAEYLSATGETAPSGFGVI  149 (390)
Q Consensus        70 i~l~~~e~~i~~~l~~~l~~~~~~~~~ylVGG~VRD~LLg~~~~DiDia~~~~~~~~f~~~l~~~l~~~g~~~~~~~~vi  149 (390)
                      ..|++....+++.+.+.+++.|  +++|+|||||||+|||++++|+||+|++. +.++++.+.+.+         +..++
T Consensus        13 ~~lp~~~~~~l~~l~~~~~~~G--~~aylVGG~VRD~LLg~~~~D~Di~t~~~-~~~~~~~~~~~~---------~~~~~   80 (441)
T 3h38_A           13 ERVDPKILNLFRLLGKFGDEVN--MPVYVVGGFVRDLLLGIKNLDIDIVVEGN-ALEFAEYAKRFL---------PGKLV   80 (441)
T ss_dssp             HHSCHHHHHHHHHHHHHHHHTT--CCEEEETHHHHHHHHTCCCCCEEEEESSC-HHHHHHHHHTTS---------CEEEE
T ss_pred             HhCCHHHHHHHHHHHHHHHHcC--CeEEEEcHHHHHHHCCCCCCCeeEEeCCC-HHHHHHHHHHHc---------CCEec
Confidence            3588999999999988888775  78999999999999999999999999985 667766554432         11222


Q ss_pred             cCCCCCCceeeEEEEEE-cCEEEEeeecccccccCCCCCcccccCCHHHHHhcCCCCccceeeecC---CCceecCcccc
Q 016396          150 PSNPDQSKHLETATMKL-YDLWIDFVNLRCEDYSENSRIPTMRFGTAEEDAYRRDLTINSLFYNIN---TSSVEDLTGRG  225 (390)
Q Consensus       150 ~~n~~~~~~~~t~~~~~-~~~~iD~~~~R~e~y~~~~r~P~v~~gti~eDl~RRDFTINAla~~l~---~~~i~D~~g~G  225 (390)
                      .     +++|+|+++.+ +|..+||+++|+|.|..+|++|.|+++|+++||.|||||||||||+++   .|.++||+| |
T Consensus        81 ~-----g~~~gt~~v~~~~g~~~ev~t~R~e~~~~~~~~p~V~~~~l~eDl~RRDFTINAla~~~~~~~~g~liD~~g-G  154 (441)
T 3h38_A           81 K-----HDKFMTASLFLKGGLRIDIATARLEYYESPAKLPDVEMSTIKKDLYRRDFTINAMAIKLNPKDFGLLIDFFG-G  154 (441)
T ss_dssp             C-----CSSTTEEEEEETTSCEEEEEECCEECCSSSSSCCEESCCCHHHHHHTSSBGGGSCEEECSGGGTTEEECSSS-H
T ss_pred             c-----CCcCcEEEEEEeCCeEEEEecccccccCCCCCCCccCCCCHHHHHHhccchhhhhhcccCCCCCCeEeCCCC-C
Confidence            1     35679999999 789999999999999999999999999999999999999999999987   378999998 9


Q ss_pred             HHHhhCCCeecCCCCCcccccChhhHHHHHHHHhhcCCCCcHHHHHHhhcHHHHHHHhccCCHHHHHHHHHHHhcCCCHH
Q 016396          226 IADLKHGKIVTPLPPKATFLDDPLRVLRAIRFGARFDFILDEELKKAAASDEVKAALAAKISRERVGTEIDLMVSGNQPV  305 (390)
Q Consensus       226 ~~DL~~~~IR~v~~p~~~F~eDPlRILRa~Rfaarlgf~Id~~T~~ai~~~~~~~~Ll~~vs~ERI~~El~kiL~~~~~~  305 (390)
                      ++||++|+||++++  .+|.|||+||||++|||++|||+|+++|..+|++. ....++.++|+|||+.|+.|||.+++|.
T Consensus       155 ~~DL~~~~iR~v~~--~~F~eDplRiLRa~Rfaa~lgf~i~~~t~~~i~~~-~~~~~l~~is~eRi~~El~kll~~~~~~  231 (441)
T 3h38_A          155 YRDLKEGVIRVLHT--LSFVDDPTRILRAIRFEQRFDFRIEETTERLLKQA-VEEGYLERTTGPRLRQELEKILEEKNPL  231 (441)
T ss_dssp             HHHHHTTEECBSST--THHHHCTTHHHHHHHHHHHTTCEECHHHHHHHHHH-HHTTHHHHSCHHHHHHHHHHHHTSSCHH
T ss_pred             HHHHhCCEEEECCC--CChhhCHHHHHHHHHHHHHhCCCCChHHHHHHHHH-HhhchhccCCHHHHHHHHHHHHcCCCHH
Confidence            99999999999975  58999999999999999999999999999999864 2234667899999999999999999999


Q ss_pred             HHHHHHHHcCcchHHhcCCCCC
Q 016396          306 KAMTHICGLTLFWIVFKLPLQV  327 (390)
Q Consensus       306 ~~L~lL~~~glL~~if~~Pe~~  327 (390)
                      .++++|+++|+|..+|  |++.
T Consensus       232 ~~l~~l~~~glL~~i~--Pel~  251 (441)
T 3h38_A          232 KSIRRMAQFDVIKHLF--PKTY  251 (441)
T ss_dssp             HHHHHHHHTTHHHHHS--TTCC
T ss_pred             HHHHHHHHcCChHHhC--cccc
Confidence            9999999999999999  9964
>1vfg_A A-adding enzyme, poly A polymerase; transferase, RNA, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: APC; 2.80A {Aquifex aeolicus} SCOP: a.173.1.1 d.218.1.4 Back     alignment and structure
>1ou5_A TRNA CCA-adding enzyme, tRNA-nucleotidyltransferase; polymerase, translation; 3.40A {Homo sapiens} SCOP: a.173.1.1 d.218.1.4 Back     alignment and structure
>1miw_A TRNA CCA-adding enzyme; tRNA nucleotidyltransferase, translation, transferase; HET: ATP; 3.00A {Geobacillus stearothermophilus} SCOP: a.173.1.1 d.218.1.4 PDB: 1miv_A* 1miy_A* Back     alignment and structure
>3aql_A Poly(A) polymerase; transferase/RNA, ATP-binding, nucleotide-binding, RNA-bindin transferase, nucleotidyltransferase, ATP binding, A-phospho; 3.00A {Escherichia coli} PDB: 3aqn_A* 3aqk_A 3aqm_A Back     alignment and structure
>2la3_A Uncharacterized protein; ATP binding, CTP binding, structural genomics, PSI-biology, structure initiative; NMR {Streptococcus pneumoniae} Back     alignment and structure
>4e8j_A Lincosamide resistance protein; structural genomics, antibiotic resistance, center for struc genomics of infectious diseases (csgid); HET: MSE LN0; 1.82A {Staphylococcus haemolyticus} PDB: 4e8i_A* 4fo1_A* Back     alignment and structure
>2fcl_A Hypothetical protein TM1012; putative nucleotidyltransferase, structural genomics, joint for structural genomics, JCSG; HET: MLY; 1.20A {Thermotoga maritima} SCOP: d.218.1.11 PDB: 2ewr_A Back     alignment and structure
>3nyb_A Poly(A) RNA polymerase protein 2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 390
d1vfga2136 d.218.1.4 (A:1-136) Poly A polymerase PcnB {Aquife 3e-16
d1ou5a2152 d.218.1.4 (A:-1-150) tRNA CCA-adding enzyme, head 3e-15
d1miwa1 265 a.173.1.1 (A:140-404) tRNA CCA-adding enzyme, C-te 3e-14
d1miwa2139 d.218.1.4 (A:1-139) tRNA CCA-adding enzyme, head d 6e-12
d1vfga1215 a.173.1.1 (A:137-351) Poly A polymerase PcnB {Aqui 3e-11
d1ou5a1204 a.173.1.1 (A:151-354) tRNA CCA-adding enzyme, C-te 2e-09
>d1vfga2 d.218.1.4 (A:1-136) Poly A polymerase PcnB {Aquifex aeolicus [TaxId: 63363]} Length = 136 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Nucleotidyltransferase
superfamily: Nucleotidyltransferase
family: Poly A polymerase head domain-like
domain: Poly A polymerase PcnB
species: Aquifex aeolicus [TaxId: 63363]

 Score = 72.6 bits (177), Expect = 3e-16
 Identities = 36/139 (25%), Positives = 56/139 (40%), Gaps = 19/139 (13%)

Query: 96  LRVAGGWVRDKLLGKDCYDIDIALDNMMGSEFATKVAEYLSATGETAPSGFGVIPSNPDQ 155
             + GG VRD LLGK+ +D+D  ++             +                 N   
Sbjct: 13  AYIVGGVVRDILLGKEVWDVDFVVEGNAIELAKELARRH---------------GVNVHP 57

Query: 156 SKHLETATMKLYDLWIDFVNLRCEDYSENSRIPTMRFGTAEEDAYRRDLTINSLFYNINT 215
                TA +K+  L ++F   R E Y      P +   + +ED  RRD TIN++  ++N 
Sbjct: 58  FPEFGTAHLKIGKLKLEFATARRETYPRPGAYPKVEPASLKEDLIRRDFTINAMAISVNL 117

Query: 216 SS---VEDLTGRGIADLKH 231
                + D  G G+ DLK 
Sbjct: 118 EDYGTLIDYFG-GLRDLKD 135
>d1ou5a2 d.218.1.4 (A:-1-150) tRNA CCA-adding enzyme, head domain {Human (Homo sapiens), mitochondrial [TaxId: 9606]} Length = 152 Back     information, alignment and structure
>d1miwa1 a.173.1.1 (A:140-404) tRNA CCA-adding enzyme, C-terminal domains {Bacillus stearothermophilus [TaxId: 1422]} Length = 265 Back     information, alignment and structure
>d1miwa2 d.218.1.4 (A:1-139) tRNA CCA-adding enzyme, head domain {Bacillus stearothermophilus [TaxId: 1422]} Length = 139 Back     information, alignment and structure
>d1vfga1 a.173.1.1 (A:137-351) Poly A polymerase PcnB {Aquifex aeolicus [TaxId: 63363]} Length = 215 Back     information, alignment and structure
>d1ou5a1 a.173.1.1 (A:151-354) tRNA CCA-adding enzyme, C-terminal domains {Human (Homo sapiens), mitochondrial [TaxId: 9606]} Length = 204 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query390
d1vfga2136 Poly A polymerase PcnB {Aquifex aeolicus [TaxId: 6 100.0
d1ou5a2152 tRNA CCA-adding enzyme, head domain {Human (Homo s 99.97
d1miwa2139 tRNA CCA-adding enzyme, head domain {Bacillus stea 99.97
d1vfga1215 Poly A polymerase PcnB {Aquifex aeolicus [TaxId: 6 99.84
d1miwa1 265 tRNA CCA-adding enzyme, C-terminal domains {Bacill 99.84
d1ou5a1204 tRNA CCA-adding enzyme, C-terminal domains {Human 99.84
d2fcla1157 Hypothetical protein TM1012 {Thermotoga maritima [ 94.4
d1r89a2142 tRNA nucleotidyltransferase, N-terminal domain {Ar 92.76
d1no5a_100 Hypothetical protein HI0073 {Haemophilus influenza 84.91
d2bcqa3190 DNA polymerase lambda {Human (Homo sapiens) [TaxId 80.16
>d1vfga2 d.218.1.4 (A:1-136) Poly A polymerase PcnB {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Nucleotidyltransferase
superfamily: Nucleotidyltransferase
family: Poly A polymerase head domain-like
domain: Poly A polymerase PcnB
species: Aquifex aeolicus [TaxId: 63363]

Probab=100.00  E-value=1.7e-35  Score=256.03  Aligned_cols=132  Identities=30%  Similarity=0.463  Sum_probs=102.2

Q ss_pred             HHHHHHhcCCCceEEEEcchhhhhhhCCCCCCeEEEEcCCChHHHHHHHHHHHHhcCCcCCCceEEecCCCCCCceeeEE
Q 016396           83 LLNTLRHFNLETVLRVAGGWVRDKLLGKDCYDIDIALDNMMGSEFATKVAEYLSATGETAPSGFGVIPSNPDQSKHLETA  162 (390)
Q Consensus        83 l~~~l~~~~~~~~~ylVGG~VRD~LLg~~~~DiDia~~~~~~~~f~~~l~~~l~~~g~~~~~~~~vi~~n~~~~~~~~t~  162 (390)
                      |.+.+++.|  +++|+|||||||+|||++|+|+||+|++. +.++++.+.+..   +.    .+..       .++++|+
T Consensus         2 I~~~~~~~G--~~~ylVGG~VRD~llg~~~~DiDi~~~~~-~~e~~~~~~~~~---~~----~~~~-------~~~~~~~   64 (136)
T d1vfga2           2 VGQIAKEMG--LRAYIVGGVVRDILLGKEVWDVDFVVEGN-AIELAKELARRH---GV----NVHP-------FPEFGTA   64 (136)
T ss_dssp             HHHHHHHTT--CCEEEETHHHHHHHTTCCCSEEEEEESSC-HHHHHHHHHHHH---TC----CCEE-------ETTTTEE
T ss_pred             hhHHHHHcC--CeEEEEchHHHHHHcCCCCCCccEEEeee-ecchhhhhhhcc---cc----cccc-------ccccccc
Confidence            456677764  78999999999999999999999999985 566655554432   21    1111       2457999


Q ss_pred             EEEEcCEEEEeeecccccccCCCCCcccccCCHHHHHhcCCCCccceeeecCC---CceecCccccHHHhhCC
Q 016396          163 TMKLYDLWIDFVNLRCEDYSENSRIPTMRFGTAEEDAYRRDLTINSLFYNINT---SSVEDLTGRGIADLKHG  232 (390)
Q Consensus       163 ~~~~~~~~iD~~~~R~e~y~~~~r~P~v~~gti~eDl~RRDFTINAla~~l~~---~~i~D~~g~G~~DL~~~  232 (390)
                      ++..++..+|++++|+|.|..++++|.+..+++++||.|||||||||||++++   |+++||+| |++||++|
T Consensus        65 ~~~~~~~~~ei~~~R~e~~~~~~~~~~~~~~~i~eDl~RRDFTiNAma~~~~~~~~g~liDp~g-G~~DL~~k  136 (136)
T d1vfga2          65 HLKIGKLKLEFATARRETYPRPGAYPKVEPASLKEDLIRRDFTINAMAISVNLEDYGTLIDYFG-GLRDLKDK  136 (136)
T ss_dssp             EEEETTEEEEEEECCSCC---------CCCCCHHHHHHTSSBGGGSCEEECCGGGTTCEECSSC-HHHHHHTT
T ss_pred             eeeeccchheehhceeccccccccCceeeeehhhhhhhhcccchhheeeccCcCCCCEEEeCCC-CHHHHhcC
Confidence            99999999999999999999999999998899999999999999999999964   58999997 99999986
>d1miwa2 d.218.1.4 (A:1-139) tRNA CCA-adding enzyme, head domain {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1vfga1 a.173.1.1 (A:137-351) Poly A polymerase PcnB {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1miwa1 a.173.1.1 (A:140-404) tRNA CCA-adding enzyme, C-terminal domains {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1ou5a1 a.173.1.1 (A:151-354) tRNA CCA-adding enzyme, C-terminal domains {Human (Homo sapiens), mitochondrial [TaxId: 9606]} Back     information, alignment and structure
>d2fcla1 d.218.1.11 (A:1-157) Hypothetical protein TM1012 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1r89a2 d.218.1.7 (A:1-142) tRNA nucleotidyltransferase, N-terminal domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1no5a_ d.218.1.5 (A:) Hypothetical protein HI0073 {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d2bcqa3 d.218.1.2 (A:386-575) DNA polymerase lambda {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure