Citrus Sinensis ID: 016398

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390
MSSSFLISLVIFLFPIMQILEAHERSTTRRQLGPESCRTGNPIDDCWRCDSEWESNRKALADCAVGFGRNAVGGRDGEIYIVKSKDDDPVDPIPGSLRYAVIQEEPLWIIFDHDMVINLKQELVMNSYKTIDGRGFNVQMSNGPCISIYNVSNIIIHNIYIHDCVPAGSAVVRDSPKHYGPRGRSDGDGISIFGSRDIWIDHCTFSHCYDGLIDIVYGSTAITISNNYMFHHNEVMLMGHSDDFSADKNMQVTIAFNFFGDGLVQRMPRCRHGFFHIVNNIYTGWEMYAIGGSANPTINSQGNVFIASNDESTKEVTKHEIISEDDEWKKWNWRSEGDLMLNGAFFTPSGQETPASYMKASSMVARPATSLLTASSPSAGALSCRNSQPC
ccccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEccccccccccccHHHHHHHHccccEEEEEEEEEEEEEEEEEEEccccEEEEEccEEEEEcccEEEEcccEEEEEEcEEEEccccccccEEEcccccccccccccccEEEEEccccEEEEcccccccccccEEEEEccEEEEEEEEEEEccccccccccccccccccccEEEEEEcccccccccccccccccEEEEEccEEEccEEEEEEcccccEEEEEcEEEEcccccccccEEEEEEccccccccccEEEEcccccccccEEccccccccccccccccEEccccccHHHHHccccccccccccccc
ccccEEEEEEHHHcHHHHHHHHHccccHHHHcccccccccccccccccccccHHHHHHHHHHHHHccccccccccccEEEEEEcccccccccccccEEEEEEEcccEEEEEcccEEEEEccEEEEEccccEccccEEEEEEcccEEEEEEEEEEEEEcEEEEEcccccccEEEcccccccccccccccEEEEEccccEEEEcccHHccccccEEEEEcccEEEEEccccccccEEEEEccccccccccccEEEEEEccccccccccccccccEEEEEEEcccccEEEEEEcccccccEEccccEEEccccccccEEEEEccccccccccccEEEccccEEEcccEEEccccccccccccHHHcccccccHHHHHHHHccccccccccccc
MSSSFLISLVIFLFPIMQILEAHersttrrqlgpescrtgnpiddcwrcdsewESNRKALADCAVgfgrnavggrdgeiyivkskdddpvdpipgslryaviqeeplwiifDHDMVINLKQELVMNSyktidgrgfnvqmsngpcisiynvsniiihniyihdcvpagsavvrdspkhygprgrsdgdgisifgsrdiwidhctfshcydgLIDIVYGSTAITISNNYMFHHNEVMlmghsddfsadknMQVTIAFNFFgdglvqrmprcrhgFFHIVNNiytgwemyaiggsanptinsqgnvfiasndestkevtkheiiseddewkkwnwrsegdlmlngafftpsgqetpasymkassmvarpatslltasspsagalscrnsqpc
MSSSFLISLVIFLFPIMQILEAHersttrrqlgpescrtgnpiddCWRCDSEWESNRKALADCAVGfgrnavggrdGEIYivkskdddpvdpIPGSLRYAVIQEEPLWIIFDHDMVINLKQELVMNSYKTIDGRGFNVQMSNGPCISIYNVSNIIIHNIYIHDCVPAGSAVVRDSPKHygprgrsdgdgISIFGSRDIWIDHCTFSHCYDGLIDIVYGSTAITISNNYMFHHNEVMLMGHSDDFSADKNMQVTIAFNFFGDGLVQRMPRCRHGFFHIVNNIYTGWEMYAIGGSANPTINSQGNVFIASNDESTKEVTkheiiseddewkkWNWRSEGDLMLNGAFFTPSGQETPASYMKASSMVARPATSLLtasspsagalscrnsqpc
MsssflislviflfpiMQILEAHERSTTRRQLGPESCRTGNPIDDCWRCDSEWESNRKALADCAVGFGRNAVGGRDGEIYIVKSKDDDPVDPIPGSLRYAVIQEEPLWIIFDHDMVINLKQELVMNSYKTIDGRGFNVQMSNGPCISIYNVSNIIIHNIYIHDCVPAGSAVVRDSPKHYGPRGRSDGDGISIFGSRDIWIDHCTFSHCYDGLIDIVYGSTAITISNNYMFHHNEVMLMGHSDDFSADKNMQVTIAFNFFGDGLVQRMPRCRHGFFHIVNNIYTGWEMYAIGGSANPTINSQGNVFIASNDESTKEVTKHEIISEDDEWKKWNWRSEGDLMLNGAFFTPSGQETPASYMKASSMVARpatslltasspsagalsCRNSQPC
****FLISLVIFLFPIMQILEAH**************RTGNPIDDCWRCDSEWESNRKALADCAVGFGRNAVGGRDGEIYIVKSKDDDPVDPIPGSLRYAVIQEEPLWIIFDHDMVINLKQELVMNSYKTIDGRGFNVQMSNGPCISIYNVSNIIIHNIYIHDCVPAGSAVVR**************DGISIFGSRDIWIDHCTFSHCYDGLIDIVYGSTAITISNNYMFHHNEVMLMGHSDDFSADKNMQVTIAFNFFGDGLVQRMPRCRHGFFHIVNNIYTGWEMYAIGGSANPTINSQGNVFIA***********HEIISEDDEWKKWNWRSEGDLMLNGAFF********************************************
***SFLISLVIFLFPIMQI**********************PIDDCWRCDSEWESNRKALADCAVGFGRNAVGGRDGEIYIVKSKDDDPVDPIPGSLRYAVIQEEPLWIIFDHDMVINLKQELVMNSYKTIDGRGFNVQMSNGPCISIYNVSNIIIHNIYIHDCVPAGSAVVRDSPKHYGPRGRSDGDGISIFGSRDIWIDHCTFSHCYDGLIDIVYGSTAITISNNYMFHHNEVMLMGHSDDFSADKNMQVTIAFNFFGDGLVQRMPRCRHGFFHIVNNIYTGWEMYAIGGSANPTINSQGNVFIASNDESTKEVTKHEIISEDDEWKKWNWRSEGDLMLNGAFFTPSGQETPASYMKASSMVARPATSLLTASSPSAGALSCRNSQPC
MSSSFLISLVIFLFPIMQILEAHERSTTRRQLGPESCRTGNPIDDCWRCDSEWESNRKALADCAVGFGRNAVGGRDGEIYIVKSKDDDPVDPIPGSLRYAVIQEEPLWIIFDHDMVINLKQELVMNSYKTIDGRGFNVQMSNGPCISIYNVSNIIIHNIYIHDCVPAGSAVVRDSPKHYGPRGRSDGDGISIFGSRDIWIDHCTFSHCYDGLIDIVYGSTAITISNNYMFHHNEVMLMGHSDDFSADKNMQVTIAFNFFGDGLVQRMPRCRHGFFHIVNNIYTGWEMYAIGGSANPTINSQGNVFIASND************SEDDEWKKWNWRSEGDLMLNGAFFTPSGQETPASYMKASSMVARPATSLLT*****************
*SSSFLISLVIFLFPIMQILEAHERSTTRR*LGPESCRTGNPIDDCWRCDSEWESNRKALADCAVGFGRNAVGGRDGEIYIVKSKDDDPVDPIPGSLRYAVIQEEPLWIIFDHDMVINLKQELVMNSYKTIDGRGFNVQMSNGPCISIYNVSNIIIHNIYIHDCVPAGSAVVRDSPKHYGPRGRSDGDGISIFGSRDIWIDHCTFSHCYDGLIDIVYGSTAITISNNYMFHHNEVMLMGHSDDFSADKNMQVTIAFNFFGDGLVQRMPRCRHGFFHIVNNIYTGWEMYAIGGSANPTINSQGNVFIASNDESTKEVTKHEIISEDDEWKKWNWRSEGDLMLNGAFFTPSG****************************************
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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SSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
SSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MSSSFLISLVIFLFPIMQILEAHERSTTRRQLGPESCRTGNPIDDCWRCDSEWESNRKALADCAVGFGRNAVGGRDGEIYIVKSKDDDPVDPIPGSLRYAVIQEEPLWIIFDHDMVINLKQELVMNSYKTIDGRGFNVQMSNGPCISIYNVSNIIIHNIYIHDCVPAGSAVVRDSPKHYGPRGRSDGDGISIFGSRDIWIDHCTFSHCYDGLIDIVYGSTAITISNNYMFHHNEVMLMGHSDDFSADKNMQVTIAFNFFGDGLVQRMPRCRHGFFHIVNNIYTGWEMYAIGGSANPTINSQGNVFIASNDESTKEVTKHEIISEDDEWKKWNWRSEGDLMLNGAFFTPSGQETPASYMKASSMVARPATSLLTASSPSAGALSCRNSQPC
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query390 2.2.26 [Sep-21-2011]
Q944R1470 Probable pectate lyase 15 yes no 0.956 0.793 0.636 1e-145
Q9FM66392 Putative pectate lyase 21 no no 0.974 0.969 0.641 1e-145
Q93Z25432 Probable pectate lyase 22 no no 0.958 0.865 0.651 1e-142
Q9FXD8408 Probable pectate lyase 5 no no 0.958 0.916 0.645 1e-140
Q9M8Z8416 Probable pectate lyase 8 no no 0.930 0.872 0.650 1e-139
Q9C5M8408 Probable pectate lyase 18 no no 0.987 0.943 0.629 1e-137
O24554401 Pectate lyase OS=Zinnia e N/A no 0.958 0.932 0.653 1e-136
Q9LJ42440 Probable pectate lyase 10 no no 0.935 0.829 0.649 1e-135
Q9LTZ0412 Putative pectate lyase 11 no no 0.930 0.881 0.625 1e-134
Q9LRM5452 Probable pectate lyase 9 no no 0.925 0.798 0.616 1e-134
>sp|Q944R1|PLY15_ARATH Probable pectate lyase 15 OS=Arabidopsis thaliana GN=At4g13710 PE=2 SV=1 Back     alignment and function desciption
 Score =  516 bits (1329), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 240/377 (63%), Positives = 295/377 (78%), Gaps = 4/377 (1%)

Query: 16  IMQILEAHERS-TTRRQLGPESCRTGNPIDDCWRCDSEWESNRKALADCAVGFGRNAVGG 74
           + ++++  E++ T RR+LG  SC TGNPIDDCWRCD  W  NRK LADC +GFGRNA+GG
Sbjct: 96  VAKLVQMSEQNRTARRKLGFFSCGTGNPIDDCWRCDRNWHKNRKRLADCGIGFGRNAIGG 155

Query: 75  RDGEIYIVKS-KDDDPVDPIPGSLRYAVIQEEPLWIIFDHDMVINLKQELVMNSYKTIDG 133
           RDG  YIV    D+D V+P PG+LR+AVIQEEPLWI+F  DMVI LKQEL+MNS+KTID 
Sbjct: 156 RDGRFYIVTDPTDEDVVNPKPGTLRHAVIQEEPLWIVFKRDMVIELKQELIMNSFKTIDA 215

Query: 134 RGFNVQMSNGPCISIYNVSNIIIHNIYIHDCVPAGSAVVRDSPKHYGPRGRSDGDGISIF 193
           RG NV ++NG CI+I  ++N+IIH ++IHDC P G+A+VR SP H+G R  +DGD +SIF
Sbjct: 216 RGSNVHIANGACITIQFITNVIIHGLHIHDCKPTGNAMVRSSPSHFGWRTMADGDAVSIF 275

Query: 194 GSRDIWIDHCTFSHCYDGLIDIVYGSTAITISNNYMFHHNEVMLMGHSDDFSADKNMQVT 253
           GS  IWIDH + SHC DGL+D V GSTAIT+SNN+  HHNEVML+GHSD ++ DK MQVT
Sbjct: 276 GSSHIWIDHNSLSHCADGLVDAVMGSTAITVSNNHFTHHNEVMLLGHSDSYTKDKLMQVT 335

Query: 254 IAFNFFGDGLVQRMPRCRHGFFHIVNNIYTGWEMYAIGGSANPTINSQGNVFIASNDEST 313
           IA+N FG+GLVQRMPRCRHG+FH+VNN YT WEMYAIGGSA PTINSQGN + A  D   
Sbjct: 336 IAYNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSAEPTINSQGNRYAAPMDRFA 395

Query: 314 KEVTKHEIISEDDEWKKWNWRSEGDLMLNGAFFTPSGQETPASYMKASSMVARPATSLLT 373
           KEVTK  + ++  EWKKWNWRSEGDL+LNGAFF PSG    ASY +ASS+ A+P++ + T
Sbjct: 396 KEVTK-RVETDASEWKKWNWRSEGDLLLNGAFFRPSGAGASASYGRASSLAAKPSSMVDT 454

Query: 374 ASSPSAGALSCRNSQPC 390
            +S +AGAL CR  +PC
Sbjct: 455 ITS-TAGALGCRKGRPC 470

Arabidopsis thaliana (taxid: 3702)
EC: 4EC: .EC: 2EC: .EC: 2EC: .EC: 2
>sp|Q9FM66|PLY21_ARATH Putative pectate lyase 21 OS=Arabidopsis thaliana GN=At5g55720 PE=3 SV=1 Back     alignment and function description
>sp|Q93Z25|PLY22_ARATH Probable pectate lyase 22 OS=Arabidopsis thaliana GN=At5g63180 PE=2 SV=1 Back     alignment and function description
>sp|Q9FXD8|PLY5_ARATH Probable pectate lyase 5 OS=Arabidopsis thaliana GN=At1g67750 PE=2 SV=2 Back     alignment and function description
>sp|Q9M8Z8|PLY8_ARATH Probable pectate lyase 8 OS=Arabidopsis thaliana GN=At3g07010 PE=2 SV=1 Back     alignment and function description
>sp|Q9C5M8|PLY18_ARATH Probable pectate lyase 18 OS=Arabidopsis thaliana GN=At4g24780 PE=2 SV=2 Back     alignment and function description
>sp|O24554|PLY_ZINEL Pectate lyase OS=Zinnia elegans PE=1 SV=1 Back     alignment and function description
>sp|Q9LJ42|PLY10_ARATH Probable pectate lyase 10 OS=Arabidopsis thaliana GN=At3g24670 PE=2 SV=2 Back     alignment and function description
>sp|Q9LTZ0|PLY11_ARATH Putative pectate lyase 11 OS=Arabidopsis thaliana GN=At3g27400 PE=3 SV=2 Back     alignment and function description
>sp|Q9LRM5|PLY9_ARATH Probable pectate lyase 9 OS=Arabidopsis thaliana GN=At3g24230 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query390
255563490399 Pectate lyase precursor, putative [Ricin 0.997 0.974 0.737 1e-173
225461920402 PREDICTED: probable pectate lyase 15-lik 0.997 0.967 0.707 1e-166
224116664368 predicted protein [Populus trichocarpa] 0.935 0.991 0.752 1e-160
296089918332 unnamed protein product [Vitis vinifera] 0.846 0.993 0.759 1e-149
297804946484 pectate lyase family protein [Arabidopsi 0.956 0.770 0.636 1e-144
18414063470 pectate lyase [Arabidopsis thaliana] gi| 0.956 0.793 0.636 1e-144
291621315407 pectate lyase [Dianthus caryophyllus] 0.956 0.916 0.664 1e-143
334186499451 pectate lyase [Arabidopsis thaliana] gi| 0.956 0.827 0.636 1e-143
15240568392 pectate lyase [Arabidopsis thaliana] gi| 0.974 0.969 0.641 1e-143
297733652403 unnamed protein product [Vitis vinifera] 0.958 0.928 0.658 1e-143
>gi|255563490|ref|XP_002522747.1| Pectate lyase precursor, putative [Ricinus communis] gi|223537985|gb|EEF39598.1| Pectate lyase precursor, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  614 bits (1584), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 295/400 (73%), Positives = 331/400 (82%), Gaps = 11/400 (2%)

Query: 1   MSSSFLISLVIFLFPI--------MQILEAHERSTTRRQLGPESCRTGNPIDDCWRCDSE 52
           MS+ FL+SL +              QI EA E S+ R  L  ESCR GNPIDDCWRCDSE
Sbjct: 1   MSTFFLLSLAMISLVTSIYSKHLTKQISEATEWSSRRSLLEKESCRFGNPIDDCWRCDSE 60

Query: 53  WESNRKALADCAVGFGRNAVGGRDGEIYIVKSKD-DDPVDPIPGSLRYAVIQEEPLWIIF 111
           WE+NRK LADCA+GFGRNAVGGRDGE Y+V   D DDPV+P PG+LRY VIQEEPLWIIF
Sbjct: 61  WETNRKMLADCAIGFGRNAVGGRDGEFYVVTDSDNDDPVNPFPGTLRYGVIQEEPLWIIF 120

Query: 112 DHDMVINLKQELVMNSYKTIDGRGFNVQMSNGPCISIYNVSNIIIHNIYIHDCVPAGSAV 171
           DHDMVI LK+EL+MNSYKTIDGRG+N+Q++ GPCI+I NVS+IIIHNIYI DC+PAG+ V
Sbjct: 121 DHDMVIKLKEELLMNSYKTIDGRGYNIQIAEGPCITIQNVSSIIIHNIYIRDCIPAGNTV 180

Query: 172 VRDSPKHYGPRGRSDGDGISIFGSRDIWIDHCTFSHCYDGLIDIVYGSTAITISNNYMFH 231
           VRDS KH G RG SDGDGISI+ +RD+WIDHCT ++C DGLID V GSTAIT+SNNYM H
Sbjct: 181 VRDSTKHAGMRGYSDGDGISIYAARDVWIDHCTLANCRDGLIDAVLGSTAITVSNNYMLH 240

Query: 232 HNEVMLMGHSDDFSADKNMQVTIAFNFFGDGLVQRMPRCRHGFFHIVNNIYTGWEMYAIG 291
           HNEVMLMGHSDDF  DKNMQVTIAFNFFGDGL QRMPRCRHG+FHIVNNIYTGWEMYAIG
Sbjct: 241 HNEVMLMGHSDDFLEDKNMQVTIAFNFFGDGLTQRMPRCRHGYFHIVNNIYTGWEMYAIG 300

Query: 292 GSANPTINSQGNVFIA-SNDESTKEVTKHEIISEDDEWKKWNWRSEGDLMLNGAFFTPSG 350
           GSANPTINSQGNVF+A S  E++  VTK EI S D+EWK WNWRS+GD+MLNGAFFTPSG
Sbjct: 301 GSANPTINSQGNVFVAKSTKEASLCVTKREISSGDEEWKSWNWRSDGDMMLNGAFFTPSG 360

Query: 351 QETPASYMKASSMVARPATSLLTASSPSAGALSCRNSQPC 390
           ++ PASYMKASSMVARPA + LT  SPSAGAL C+  Q C
Sbjct: 361 EKGPASYMKASSMVARPA-AFLTDISPSAGALDCQRGQQC 399

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225461920|ref|XP_002265729.1| PREDICTED: probable pectate lyase 15-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|224116664|ref|XP_002317359.1| predicted protein [Populus trichocarpa] gi|222860424|gb|EEE97971.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|296089918|emb|CBI39737.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|297804946|ref|XP_002870357.1| pectate lyase family protein [Arabidopsis lyrata subsp. lyrata] gi|297316193|gb|EFH46616.1| pectate lyase family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|18414063|ref|NP_567409.1| pectate lyase [Arabidopsis thaliana] gi|32129907|sp|Q944R1.1|PEL15_ARATH RecName: Full=Probable pectate lyase 15; AltName: Full=Pectate lyase A11; Flags: Precursor gi|15983436|gb|AAL11586.1|AF424592_1 AT4g13710/F18A5_100 [Arabidopsis thaliana] gi|22655370|gb|AAM98277.1| At4g13710/F18A5_100 [Arabidopsis thaliana] gi|332657915|gb|AEE83315.1| pectate lyase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|291621315|dbj|BAI94495.1| pectate lyase [Dianthus caryophyllus] Back     alignment and taxonomy information
>gi|334186499|ref|NP_001190720.1| pectate lyase [Arabidopsis thaliana] gi|332657916|gb|AEE83316.1| pectate lyase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|15240568|ref|NP_200383.1| pectate lyase [Arabidopsis thaliana] gi|32129915|sp|Q9FM66.1|PEL21_ARATH RecName: Full=Putative pectate lyase 21; Flags: Precursor gi|9758606|dbj|BAB09239.1| pectate lyase [Arabidopsis thaliana] gi|332009289|gb|AED96672.1| pectate lyase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297733652|emb|CBI14899.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query390
TAIR|locus:2161992432 AT5G63180 [Arabidopsis thalian 0.882 0.796 0.685 1.8e-135
TAIR|locus:2121914408 AT4G24780 [Arabidopsis thalian 0.923 0.882 0.650 1.8e-133
TAIR|locus:2008550408 AT1G67750 [Arabidopsis thalian 0.948 0.906 0.631 5.6e-132
TAIR|locus:2005487470 AT4G13710 [Arabidopsis thalian 0.941 0.780 0.627 1e-130
TAIR|locus:2077622416 AT3G07010 [Arabidopsis thalian 0.930 0.872 0.633 3.5e-130
TAIR|locus:2154384417 AT5G48900 [Arabidopsis thalian 0.930 0.870 0.639 7.3e-130
TAIR|locus:2162182392 AT5G55720 [Arabidopsis thalian 0.833 0.829 0.699 8.4e-129
TAIR|locus:2086656412 AT3G27400 [Arabidopsis thalian 0.930 0.881 0.606 2e-127
TAIR|locus:2093131440 AT3G24670 [Arabidopsis thalian 0.876 0.777 0.665 8.7e-127
TAIR|locus:2197808431 AT1G04680 [Arabidopsis thalian 0.928 0.839 0.608 2.6e-125
TAIR|locus:2161992 AT5G63180 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1327 (472.2 bits), Expect = 1.8e-135, P = 1.8e-135
 Identities = 242/353 (68%), Positives = 286/353 (81%)

Query:    21 EAHER---STTRRQLGPESCRTGNPIDDCWRCDSEWESNRKALADCAVGFGRNAVGGRDG 77
             E H +   S +RR+LG  SC +GNPIDDCWRCD +WE NRK LADC +GFG+NA+GGRDG
Sbjct:    59 EVHRKINESISRRKLGFFSCGSGNPIDDCWRCDKDWEKNRKRLADCGIGFGKNAIGGRDG 118

Query:    78 EIYIVKSK-DDDPVDPIPGSLRYAVIQEEPLWIIFDHDMVINLKQELVMNSYKTIDGRGF 136
             EIY+V    +DDPV+P PG+LRYAVIQ+EPLWIIF  DM I LK+EL+MNS+KT+DGRG 
Sbjct:   119 EIYVVTDPGNDDPVNPRPGTLRYAVIQDEPLWIIFKRDMTIQLKEELIMNSFKTLDGRGA 178

Query:   137 NVQMSNGPCISIYNVSNIIIHNIYIHDCVPAGSAVVRDSPKHYGPRGRSDGDGISIFGSR 196
             +V +S GPCI+I  V+NIIIH ++IHDC   G+  VRDSP+HYG R  SDGDG+SIFG  
Sbjct:   179 SVHISGGPCITIQYVTNIIIHGLHIHDCKQGGNTYVRDSPEHYGYRTVSDGDGVSIFGGS 238

Query:   197 DIWIDHCTFSHCYDGLIDIVYGSTAITISNNYMFHHNEVMLMGHSDDFSADKNMQVTIAF 256
              +W+DHC+ S+C DGLID + GSTAITISNNY+ HHN+VML+GHSD +  DKNMQVTIAF
Sbjct:   239 HVWVDHCSLSNCNDGLIDAIRGSTAITISNNYLTHHNKVMLLGHSDTYEQDKNMQVTIAF 298

Query:   257 NFFGDGLVQRMPRCRHGFFHIVNNIYTGWEMYAIGGSANPTINSQGNVFIASNDESTKEV 316
             N FG+GLVQRMPRCRHG+FH+VNN YT WEMYAIGGSANPTINSQGN F+A +D S+KEV
Sbjct:   299 NHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFLAPDDSSSKEV 358

Query:   317 TKHEIISEDDEWKKWNWRSEGDLMLNGAFFTPSGQETPA---SYMKASSMVAR 366
             TKHE   ED EW+ WNWRSEGDL+LNGAFFT SG   PA   SY KASS+ AR
Sbjct:   359 TKHEDAPED-EWRNWNWRSEGDLLLNGAFFTYSGAG-PAKSSSYSKASSLAAR 409
GO:0005576 "extracellular region" evidence=ISM
GO:0008150 "biological_process" evidence=ND
GO:0016829 "lyase activity" evidence=ISS
GO:0030570 "pectate lyase activity" evidence=ISS
TAIR|locus:2121914 AT4G24780 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2008550 AT1G67750 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2005487 AT4G13710 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2077622 AT3G07010 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2154384 AT5G48900 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2162182 AT5G55720 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2086656 AT3G27400 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2093131 AT3G24670 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2197808 AT1G04680 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P40972PLY_TOBAC4, ., 2, ., 2, ., 20.50500.98970.9722N/Ano
P40973PLY_LILLO4, ., 2, ., 2, ., 20.53360.93580.8410N/Ano
Q944R1PLY15_ARATH4, ., 2, ., 2, ., 20.63660.95640.7936yesno
O24554PLY_ZINEL4, ., 2, ., 2, ., 20.65340.95890.9326N/Ano
P24396PLY18_SOLLC4, ., 2, ., 2, ., 20.59940.95890.9257N/Ano
P15722PLY59_SOLLC4, ., 2, ., 2, ., 20.52890.95380.8285N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer4.2.20.976
4th Layer4.2.2.20.991

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query390
smart00656190 smart00656, Amb_all, Amb_all domain 2e-78
pfam00544200 pfam00544, Pec_lyase_C, Pectate lyase 3e-73
COG3866345 COG3866, PelB, Pectate lyase [Carbohydrate transpo 2e-28
>gnl|CDD|214765 smart00656, Amb_all, Amb_all domain Back     alignment and domain information 
 Score =  239 bits (612), Expect = 2e-78
 Identities = 98/207 (47%), Positives = 122/207 (58%), Gaps = 28/207 (13%)

Query: 114 DMVINLKQ--ELVMNSYKTIDGRGFNVQMSNGPCISIYNVSNIIIHNIYIHDCVPAGSAV 171
           D+ I L     +++NS KTIDGRG  V++  G  ++I +VSN+II N+ IHD  P     
Sbjct: 1   DVTITLDNAGTIIINSNKTIDGRGSKVEIKGG-GLTIKSVSNVIIRNLTIHDPKPVY--- 56

Query: 172 VRDSPKHYGPRGRSDGDGISIFGSRDIWIDHCTFSHC---------YDGLIDIVYGSTAI 222
                        SDGD ISI GS ++WIDH + S C         YDGLIDI  GST +
Sbjct: 57  ------------GSDGDAISIDGSSNVWIDHVSLSGCTVTGFGDDTYDGLIDIKNGSTYV 104

Query: 223 TISNNYMFHHNEVMLMGHSDDFSADKNMQVTIAFNFFGDGLVQRMPRCRHGFFHIVNNIY 282
           TISNNY  +H +VML+GHSD  + D  M+VTIA N+F   L QR PR R G+ H+ NN Y
Sbjct: 105 TISNNYFHNHWKVMLLGHSDSDTDDGKMRVTIAHNYF-GNLRQRAPRVRFGYVHVYNNYY 163

Query: 283 TGWEMYAIGGSANPTINSQGNVFIASN 309
           TGW  YAIGG    TI S+GN F A  
Sbjct: 164 TGWTSYAIGGRMGATILSEGNYFEAPI 190

Length = 190
>gnl|CDD|215986 pfam00544, Pec_lyase_C, Pectate lyase Back     alignment and domain information
>gnl|CDD|226384 COG3866, PelB, Pectate lyase [Carbohydrate transport and metabolism] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 390
COG3866345 PelB Pectate lyase [Carbohydrate transport and met 100.0
PF00544200 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pe 100.0
smart00656190 Amb_all Amb_all domain. 100.0
TIGR03805314 beta_helix_1 parallel beta-helix repeat-containing 98.9
PF14592425 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OF 98.37
PLN03003456 Probable polygalacturonase At3g15720 98.15
PLN02218431 polygalacturonase ADPG 98.04
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 97.97
PLN02188404 polygalacturonase/glycoside hydrolase family prote 97.84
PLN02793443 Probable polygalacturonase 97.82
PLN02155394 polygalacturonase 97.82
PLN03010409 polygalacturonase 97.79
PF00295326 Glyco_hydro_28: Glycosyl hydrolases family 28; Int 97.72
TIGR03808 455 RR_plus_rpt_1 twin-arg-translocated uncharacterize 97.68
PF01696386 Adeno_E1B_55K: Adenovirus EB1 55K protein / large 97.61
TIGR03805314 beta_helix_1 parallel beta-helix repeat-containing 97.57
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 97.52
PLN02218431 polygalacturonase ADPG 97.51
PF12708225 Pectate_lyase_3: Pectate lyase superfamily protein 97.34
PLN02155394 polygalacturonase 97.28
TIGR03808455 RR_plus_rpt_1 twin-arg-translocated uncharacterize 97.23
PF05048236 NosD: Periplasmic copper-binding protein (NosD); I 97.21
PF05048236 NosD: Periplasmic copper-binding protein (NosD); I 97.11
PF00295326 Glyco_hydro_28: Glycosyl hydrolases family 28; Int 97.03
PLN02197588 pectinesterase 96.99
PLN02480343 Probable pectinesterase 96.98
PF07602246 DUF1565: Protein of unknown function (DUF1565); In 96.96
PLN03010409 polygalacturonase 96.89
PLN03003456 Probable polygalacturonase At3g15720 96.89
PLN02793443 Probable polygalacturonase 96.86
PLN02188404 polygalacturonase/glycoside hydrolase family prote 96.61
smart00656190 Amb_all Amb_all domain. 96.5
PLN02432293 putative pectinesterase 96.17
PLN02682369 pectinesterase family protein 95.89
PLN02176340 putative pectinesterase 95.76
COG5434542 PGU1 Endopygalactorunase [Cell envelope biogenesis 95.65
PF00544200 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pe 95.5
PLN02416541 probable pectinesterase/pectinesterase inhibitor 95.49
PLN03043538 Probable pectinesterase/pectinesterase inhibitor; 95.47
PLN02773317 pectinesterase 95.36
PLN02170529 probable pectinesterase/pectinesterase inhibitor 95.32
PLN02634359 probable pectinesterase 94.9
PLN02301548 pectinesterase/pectinesterase inhibitor 94.85
PLN02304379 probable pectinesterase 94.85
PLN02201520 probable pectinesterase/pectinesterase inhibitor 94.7
PLN02671359 pectinesterase 94.63
COG3420408 NosD Nitrous oxidase accessory protein [Inorganic 94.55
PLN02497331 probable pectinesterase 94.51
PLN02488509 probable pectinesterase/pectinesterase inhibitor 94.45
PLN02708553 Probable pectinesterase/pectinesterase inhibitor 94.42
PLN02665366 pectinesterase family protein 94.41
COG3420408 NosD Nitrous oxidase accessory protein [Inorganic 94.34
PLN02484587 probable pectinesterase/pectinesterase inhibitor 94.33
PLN02995539 Probable pectinesterase/pectinesterase inhibitor 94.29
PLN02933530 Probable pectinesterase/pectinesterase inhibitor 94.14
PLN02745596 Putative pectinesterase/pectinesterase inhibitor 94.13
PLN02217670 probable pectinesterase/pectinesterase inhibitor 93.99
PLN02990572 Probable pectinesterase/pectinesterase inhibitor 93.99
PLN02916502 pectinesterase family protein 93.97
PLN02506537 putative pectinesterase/pectinesterase inhibitor 93.96
PF01095298 Pectinesterase: Pectinesterase; InterPro: IPR00007 93.8
PLN02314586 pectinesterase 93.79
PLN02313587 Pectinesterase/pectinesterase inhibitor 93.78
PLN02713566 Probable pectinesterase/pectinesterase inhibitor 93.51
PLN02468565 putative pectinesterase/pectinesterase inhibitor 93.35
COG5434542 PGU1 Endopygalactorunase [Cell envelope biogenesis 90.96
PRK10531422 acyl-CoA thioesterase; Provisional 90.41
PF14592425 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OF 90.1
COG3866345 PelB Pectate lyase [Carbohydrate transport and met 87.96
PF12708225 Pectate_lyase_3: Pectate lyase superfamily protein 87.28
PF08480198 Disaggr_assoc: Disaggregatase related; InterPro: I 84.36
PF03211215 Pectate_lyase: Pectate lyase; InterPro: IPR004898 82.06
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=1.1e-57  Score=437.90  Aligned_cols=273  Identities=29%  Similarity=0.371  Sum_probs=224.5

Q ss_pred             CCcCCCCCeEEEecCCCCCCCCCCchhHHHhhhCCCCeEEEEeeceEEEeC------ceEEeccCceEEecCcceEEecC
Q 016398           70 NAVGGRDGEIYIVKSKDDDPVDPIPGSLRYAVIQEEPLWIIFDHDMVINLK------QELVMNSYKTIDGRGFNVQMSNG  143 (390)
Q Consensus        70 ~ttGG~gG~v~~VT~~~d~~~~~~pGsLr~av~~~~P~~IvF~~~g~I~l~------~~L~i~snkTI~G~ga~i~I~~G  143 (390)
                      +||||.||.+++|++.+|         |..++...+|.++|+-+.|+|.+.      .+|.+.|||||.|.|++.+|. |
T Consensus        47 GTtGG~~g~~v~v~ta~~---------l~~~~sa~~~~t~ii~v~Gti~~s~ps~~k~~iki~sNkTivG~g~~a~~~-g  116 (345)
T COG3866          47 GTTGGSGGDIVTVRTAND---------LETYLSASGKYTVIIVVKGTITASTPSDKKITIKIGSNKTIVGSGADATLV-G  116 (345)
T ss_pred             CcccCCCCcEEEEeeHHH---------HHHHhhccCceEEEEEEcceEeccCCCCceEEEeeccccEEEeeccccEEE-e
Confidence            799999999999999999         999999999996666678888887      467778999999999999998 6


Q ss_pred             CcEEEeccccEEEEceEEEeeccCCCceeeCCCCCCCCCCCCCCCeEEE-eCCccEEEEeeEEec--------cccCeEE
Q 016398          144 PCISIYNVSNIIIHNIYIHDCVPAGSAVVRDSPKHYGPRGRSDGDGISI-FGSRDIWIDHCTFSH--------CYDGLID  214 (390)
Q Consensus       144 ~gi~i~~~~NVIIrnL~i~~~~~~~~~~i~~~~~~~g~~~~~~~DaIsi-~gs~nVWIDHcs~s~--------~~Dglid  214 (390)
                      .+|+|+.+.|||||||+|++...++                ...|+|+| .+++|||||||+|+.        ..||++|
T Consensus       117 ~gl~i~~a~NVIirNltf~~~~~~d----------------~~~D~Isi~~~~~nIWIDH~tf~~~s~~~~~~h~DGl~D  180 (345)
T COG3866         117 GGLKIRDAGNVIIRNLTFEGFYQGD----------------PNYDAISIYDDGHNIWIDHNTFSGGSYNASGSHGDGLVD  180 (345)
T ss_pred             ceEEEEeCCcEEEEeeEEEeeccCC----------------CCCCcEEeccCCeEEEEEeeEeccccccccccCCCccEE
Confidence            6899999999999999999875321                12699999 679999999999999        6899999


Q ss_pred             eeeCCeeEEEEceeeeccCeeeeeccCCCC-CCCCcceEEEEeeEecCCCCCCCCcccCceEEEEcceeeCCcc--eEEe
Q 016398          215 IVYGSTAITISNNYMFHHNEVMLMGHSDDF-SADKNMQVTIAFNFFGDGLVQRMPRCRHGFFHIVNNIYTGWEM--YAIG  291 (390)
Q Consensus       215 i~~~s~~ITISnn~f~~H~k~~L~G~sd~~-~~d~~~~vTi~~N~f~~n~~~R~Pr~r~G~~hvvNN~~~~~~~--yaig  291 (390)
                      |++++++||||||+|++|+|.+|+|.+|+. .+|...+||+||||| +|+.||+||+|||.+||+||||.....  ||++
T Consensus       181 ik~~AnyITiS~n~fhdh~Kssl~G~sD~~~~~~~~~kvT~hhNyF-kn~~qR~PriRfG~vHvyNNYy~~~~~~g~a~~  259 (345)
T COG3866         181 IKKDANYITISYNKFHDHDKSSLLGSSDSSNYDDGKYKVTIHHNYF-KNLYQRGPRIRFGMVHVYNNYYEGNPKFGVAIT  259 (345)
T ss_pred             eccCCcEEEEEeeeeecCCeeeeeccCCcccccCCceeEEEecccc-ccccccCCceEeeEEEEeccccccCcccceEEe
Confidence            999999999999999999999999999984 456789999999999 799999999999999999999996554  5666


Q ss_pred             cCCCceEEEEecEEEcCCCCCccceeeeccccCccccccCeEeecCceEEeccEEcCCCCCCC------CCCCCCCceee
Q 016398          292 GSANPTINSQGNVFIASNDESTKEVTKHEIISEDDEWKKWNWRSEGDLMLNGAFFTPSGQETP------ASYMKASSMVA  365 (390)
Q Consensus       292 g~~~~~i~~egN~F~~~~~~~~k~vt~r~~~~~~~~~~~~~w~s~gd~~~nG~~f~~sG~~~~------~~~~~~~~~~~  365 (390)
                      .+..++|++|+|||+....+..-.-+++.         ..+|+-     -+|++|..++....      -.+.+.|+|++
T Consensus       260 iG~~AkiyvE~NyF~~~~~~~~f~dt~~~---------~GY~~~-----d~gsy~~~s~~~~~~~~G~~w~ps~~Y~Ytv  325 (345)
T COG3866         260 IGTSAKIYVENNYFENGSEGLGFLDTKGT---------SGYANQ-----DSGSYLNSSKSMSVRAGGVTWNPSSYYSYTV  325 (345)
T ss_pred             eccceEEEEecceeccCCCCceeeecCCc---------cceEEe-----ccCceecccCCcccccCCccCCCCCCccccc
Confidence            55569999999999998654211111111         124431     23556655554332      23466799999


Q ss_pred             cCccchHHHhccCcCCCC
Q 016398          366 RPATSLLTASSPSAGALS  383 (390)
Q Consensus       366 ~pas~~~~~vt~~AGa~~  383 (390)
                      +|++++.+.|+.+||+.+
T Consensus       326 d~~~dVks~Vt~yAGaGk  343 (345)
T COG3866         326 DPPEDVKSFVTNYAGAGK  343 (345)
T ss_pred             CChHHhhhhhhcccccee
Confidence            999988888999999764

>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4 Back     alignment and domain information
>smart00656 Amb_all Amb_all domain Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A Back     alignment and domain information
>PLN03003 Probable polygalacturonase At3g15720 Back     alignment and domain information
>PLN02218 polygalacturonase ADPG Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>PLN02793 Probable polygalacturonase Back     alignment and domain information
>PLN02155 polygalacturonase Back     alignment and domain information
>PLN03010 polygalacturonase Back     alignment and domain information
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3 Back     alignment and domain information
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein Back     alignment and domain information
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>PLN02218 polygalacturonase ADPG Back     alignment and domain information
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A Back     alignment and domain information
>PLN02155 polygalacturonase Back     alignment and domain information
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein Back     alignment and domain information
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O Back     alignment and domain information
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O Back     alignment and domain information
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PLN02197 pectinesterase Back     alignment and domain information
>PLN02480 Probable pectinesterase Back     alignment and domain information
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans Back     alignment and domain information
>PLN03010 polygalacturonase Back     alignment and domain information
>PLN03003 Probable polygalacturonase At3g15720 Back     alignment and domain information
>PLN02793 Probable polygalacturonase Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>smart00656 Amb_all Amb_all domain Back     alignment and domain information
>PLN02432 putative pectinesterase Back     alignment and domain information
>PLN02682 pectinesterase family protein Back     alignment and domain information
>PLN02176 putative pectinesterase Back     alignment and domain information
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4 Back     alignment and domain information
>PLN02416 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>PLN02773 pectinesterase Back     alignment and domain information
>PLN02170 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02634 probable pectinesterase Back     alignment and domain information
>PLN02301 pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02304 probable pectinesterase Back     alignment and domain information
>PLN02201 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02671 pectinesterase Back     alignment and domain information
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism] Back     alignment and domain information
>PLN02497 probable pectinesterase Back     alignment and domain information
>PLN02488 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02708 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02665 pectinesterase family protein Back     alignment and domain information
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism] Back     alignment and domain information
>PLN02484 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02995 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02933 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02745 Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02217 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02990 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02916 pectinesterase family protein Back     alignment and domain information
>PLN02506 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3 Back     alignment and domain information
>PLN02314 pectinesterase Back     alignment and domain information
>PLN02313 Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02713 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02468 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PRK10531 acyl-CoA thioesterase; Provisional Back     alignment and domain information
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A Back     alignment and domain information
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A Back     alignment and domain information
>PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina Back     alignment and domain information
>PF03211 Pectate_lyase: Pectate lyase; InterPro: IPR004898 Pectate lyase is responsible for the maceration and soft-rotting of plant tissue Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query390
1pxz_A346 1.7 Angstrom Crystal Structure Of Jun A 1, The Majo 6e-87
3zsc_A340 Catalytic Function And Substrate Recognition Of The 8e-20
1pcl_A355 Unusual Structural Features In The Parallel Beta-He 5e-16
1ooc_A361 Mutations In The T1.5 Loop Of Pectate Lyase A Lengt 9e-15
1jrg_A361 Crystal Structure Of The R3 Form Of Pectate Lyase A 1e-14
1vbl_A416 Structure Of The Thermostable Pectate Lyase Pl 47 L 7e-14
3krg_A399 Structural Insights Into Substrate Specificity And 4e-12
1bn8_A420 Bacillus Subtilis Pectate Lyase Length = 420 4e-12
2bsp_A420 Bacillus Subtilis Pectate Lyase R279k Mutant Length 1e-11
2nzm_A399 Hexasaccharide I Bound To Bacillus Subtilis Pectate 3e-11
3vmv_A326 Crystal Structure Of Pectate Lyase Bsp165pela From 3e-09
2qx3_A330 Structure Of Pectate Lyase Ii From Xanthomonas Camp 3e-08
1plu_A353 Pectate Lyase C From Erwinia Chrysanthemi With 1 Lu 4e-08
2qxz_A330 Pectate Lyase R236f From Xanthomonas Campestris Len 5e-08
2qy1_A330 Pectate Lyase A31g/r236f From Xanthomonas Campestri 5e-08
2ewe_A353 Crystal Structure Of Pectate Lyase C R218k Mutant I 1e-07
1qcx_A359 Pectin Lyase B Length = 359 5e-05
>pdb|1PXZ|A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen Length = 346 Back     alignment and structure 
Iteration: 1

 Score =  317 bits (813), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 156/314 (49%), Positives = 206/314 (65%), Gaps = 4/314 (1%)
Query: 41  NPIDDCWRCDSEWESNRKALADCAVGFGRNAVGGRDGEIYIVKSKDDDPVDPIPGSLRYA 100
           NPID CWR DS W+ NR  LADCAVGFG + +GG+ G+ Y V S DD+PV+P PG+LRY 
Sbjct: 2   NPIDSCWRGDSNWDQNRMKLADCAVGFGSSTMGGKGGDFYTVTSTDDNPVNPTPGTLRYG 61
Query: 101 VIQEEPLWIIFDHDMVINLKQELVMNSYKTIDGRGFNVQMSNG-PCISIYNVSNIIIHNI 159
             +E+ LWIIF  +M I LK  L +  +KTIDGRG +V + NG PC+ +  VS++I+H++
Sbjct: 62  ATREKALWIIFSQNMNIKLKMPLYVAGHKTIDGRGADVHLGNGGPCLFMRKVSHVILHSL 121
Query: 160 YIHDCVPA--GSAVVRDSPKHYGPRGRSDGDGISIFGSRDIWIDHCTFSHCYDGLIDIVY 217
           +IH C  +  G  +V +S     P    DGD I++    + WIDH + S C DGLID+  
Sbjct: 122 HIHGCNTSVLGDVLVSESIG-VEPVHAQDGDAITMRNVTNAWIDHNSLSDCSDGLIDVTL 180
Query: 218 GSTAITISNNYMFHHNEVMLMGHSDDFSADKNMQVTIAFNFFGDGLVQRMPRCRHGFFHI 277
           GST ITISNN+ F+H++VML+GH D +  DK+M+VT+AFN FG    QRMPR R+G  H+
Sbjct: 181 GSTGITISNNHFFNHHKVMLLGHDDTYDDDKSMKVTVAFNQFGPNAGQRMPRARYGLVHV 240
Query: 278 VNNIYTGWEMYAIGGSANPTINSQGNVFIASNDESTKEVTKHEIISEDDEWKKWNWRSEG 337
            NN Y  W +YAIGGS+NPTI S+GN F A ++   KEVTK            W WRS  
Sbjct: 241 ANNNYDPWNIYAIGGSSNPTILSEGNSFTAPSESYKKEVTKRIGCESPSACANWVWRSTR 300
Query: 338 DLMLNGAFFTPSGQ 351
           D  +NGA+F  SG+
Sbjct: 301 DAFINGAYFVSSGK 314
>pdb|3ZSC|A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima Length = 340 Back     alignment and structure
>pdb|1PCL|A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases Length = 355 Back     alignment and structure
>pdb|1OOC|A Chain A, Mutations In The T1.5 Loop Of Pectate Lyase A Length = 361 Back     alignment and structure
>pdb|1JRG|A Chain A, Crystal Structure Of The R3 Form Of Pectate Lyase A, Erwinia Chrysanthemi Length = 361 Back     alignment and structure
>pdb|1VBL|A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 Length = 416 Back     alignment and structure
>pdb|3KRG|A Chain A, Structural Insights Into Substrate Specificity And The Anti Beta-Elimination Mechanism Of Pectate Lyase Length = 399 Back     alignment and structure
>pdb|1BN8|A Chain A, Bacillus Subtilis Pectate Lyase Length = 420 Back     alignment and structure
>pdb|2BSP|A Chain A, Bacillus Subtilis Pectate Lyase R279k Mutant Length = 420 Back     alignment and structure
>pdb|2NZM|A Chain A, Hexasaccharide I Bound To Bacillus Subtilis Pectate Lyase Length = 399 Back     alignment and structure
>pdb|3VMV|A Chain A, Crystal Structure Of Pectate Lyase Bsp165pela From Bacillus Sp. N165 Length = 326 Back     alignment and structure
>pdb|2QX3|A Chain A, Structure Of Pectate Lyase Ii From Xanthomonas Campestris Pv. Campestris Str. Atcc 33913 Length = 330 Back     alignment and structure
>pdb|1PLU|A Chain A, Pectate Lyase C From Erwinia Chrysanthemi With 1 Lu+3 Ion In The Putative Calcium Binding Site Length = 353 Back     alignment and structure
>pdb|2QXZ|A Chain A, Pectate Lyase R236f From Xanthomonas Campestris Length = 330 Back     alignment and structure
>pdb|2QY1|A Chain A, Pectate Lyase A31g/r236f From Xanthomonas Campestris Length = 330 Back     alignment and structure
>pdb|2EWE|A Chain A, Crystal Structure Of Pectate Lyase C R218k Mutant In Complex With Pentagalacturonic Acid Length = 353 Back     alignment and structure
>pdb|1QCX|A Chain A, Pectin Lyase B Length = 359 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query390
1pxz_A346 Major pollen allergen JUN A 1; parallel beta-helix 1e-138
3zsc_A340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 2e-95
1pe9_A361 Pectate lyase A; parallel beta helix; 1.60A {Erwin 7e-83
3vmv_A326 Pectate lyase; polysaccharide lyase family 1, beta 5e-82
1pcl_A355 Pectate lyase E; lyase (acting on polysaccharides) 2e-77
2o04_A399 Pectate lyase, PL; hexasaccharide compound II, cal 5e-71
2qy1_A330 Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca 9e-71
1qcx_A359 Pectin lyase B; beta-helix protein, plant cell WAL 7e-70
1air_A353 Pectate lyase C, PELC; pectate cleavage, pectinoly 2e-68
1vbl_A416 Pectate lyase 47; PL 47, thermostable, bacillus su 8e-66
1idk_A359 Pectin lyase A; signal, glycoprotein, multigene fa 1e-60
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 2e-07
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 5e-05
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 3e-07
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 3e-04
1h80_A464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 3e-06
1ru4_A400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 1e-04
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 2e-04
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 2e-04
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 2e-04
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 3e-04
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Length = 346 Back     alignment and structure
 Score =  397 bits (1021), Expect = e-138
 Identities = 158/346 (45%), Positives = 212/346 (61%), Gaps = 4/346 (1%)

Query: 41  NPIDDCWRCDSEWESNRKALADCAVGFGRNAVGGRDGEIYIVKSKDDDPVDPIPGSLRYA 100
           NPID CWR DS W+ NR  LADCAVGFG + +GG+ G+ Y V S DD+PV+P PG+LRY 
Sbjct: 2   NPIDSCWRGDSNWDQNRMKLADCAVGFGSSTMGGKGGDFYTVTSTDDNPVNPTPGTLRYG 61

Query: 101 VIQEEPLWIIFDHDMVINLKQELVMNSYKTIDGRGFNVQ-MSNGPCISIYNVSNIIIHNI 159
             +E+ LWIIF  +M I LK  L +  +KTIDGRG +V   + GPC+ +  VS++I+H++
Sbjct: 62  ATREKALWIIFSQNMNIKLKMPLYVAGHKTIDGRGADVHLGNGGPCLFMRKVSHVILHSL 121

Query: 160 YIHDCVPAGSAVVRDSP-KHYGPRGRSDGDGISIFGSRDIWIDHCTFSHCYDGLIDIVYG 218
           +IH C  +    V  S      P    DGD I++    + WIDH + S C DGLID+  G
Sbjct: 122 HIHGCNTSVLGDVLVSESIGVEPVHAQDGDAITMRNVTNAWIDHNSLSDCSDGLIDVTLG 181

Query: 219 STAITISNNYMFHHNEVMLMGHSDDFSADKNMQVTIAFNFFGDGLVQRMPRCRHGFFHIV 278
           ST ITISNN+ F+H++VML+GH D +  DK+M+VT+AFN FG    QRMPR R+G  H+ 
Sbjct: 182 STGITISNNHFFNHHKVMLLGHDDTYDDDKSMKVTVAFNQFGPNAGQRMPRARYGLVHVA 241

Query: 279 NNIYTGWEMYAIGGSANPTINSQGNVFIASNDESTKEVTKHEIISEDDEWKKWNWRSEGD 338
           NN Y  W +YAIGGS+NPTI S+GN F A ++   KEVTK            W WRS  D
Sbjct: 242 NNNYDPWNIYAIGGSSNPTILSEGNSFTAPSESYKKEVTKRIGCESPSACANWVWRSTRD 301

Query: 339 LMLNGAFFTPSGQ-ETPASYMKASSMVARPATSLLTASSPSAGALS 383
             +NGA+F  SG+ E    Y    +       +     + +AG ++
Sbjct: 302 AFINGAYFVSSGKTEETNIYNSNEAFKVENG-NAAPQLTKNAGVVT 346
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Length = 340 Back     alignment and structure
>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Length = 361 Back     alignment and structure
>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Length = 326 Back     alignment and structure
>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Length = 355 Back     alignment and structure
>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* Length = 399 Back     alignment and structure
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Length = 330 Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Length = 359 Back     alignment and structure
>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Length = 353 Back     alignment and structure
>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Length = 416 Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Length = 359 Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Length = 609 Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Length = 609 Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Length = 464 Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Length = 400 Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Length = 422 Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Length = 349 Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Length = 608 Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Length = 339 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query390
1pxz_A346 Major pollen allergen JUN A 1; parallel beta-helix 100.0
3zsc_A340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 100.0
2qy1_A330 Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca 100.0
3vmv_A326 Pectate lyase; polysaccharide lyase family 1, beta 100.0
1pcl_A355 Pectate lyase E; lyase (acting on polysaccharides) 100.0
1pe9_A361 Pectate lyase A; parallel beta helix; 1.60A {Erwin 100.0
1vbl_A416 Pectate lyase 47; PL 47, thermostable, bacillus su 100.0
2o04_A399 Pectate lyase, PL; hexasaccharide compound II, cal 100.0
1idk_A359 Pectin lyase A; signal, glycoprotein, multigene fa 100.0
1air_A353 Pectate lyase C, PELC; pectate cleavage, pectinoly 100.0
1qcx_A359 Pectin lyase B; beta-helix protein, plant cell WAL 100.0
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 98.49
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 98.45
1ru4_A400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 98.21
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 98.08
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 98.01
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 98.01
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 97.99
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 97.99
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 97.97
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 97.93
2inu_A410 Insulin fructotransferase; right-handed parallel b 97.92
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 97.91
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 97.91
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 97.9
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 97.85
1dbg_A 506 Chondroitinase B; beta helix, polysaccharide lyase 97.84
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 97.81
3zsc_A340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 97.78
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 97.78
1pxz_A346 Major pollen allergen JUN A 1; parallel beta-helix 97.76
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 97.76
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 97.64
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 97.63
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 97.56
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 97.54
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 97.5
1qcx_A359 Pectin lyase B; beta-helix protein, plant cell WAL 97.4
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 97.3
3vmv_A326 Pectate lyase; polysaccharide lyase family 1, beta 97.29
1idk_A359 Pectin lyase A; signal, glycoprotein, multigene fa 97.28
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 97.21
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 97.15
1h80_A464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 97.06
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 97.03
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 97.01
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 96.95
1ogo_X574 Dextranase; hydrolase, dextran degradation, glycos 96.91
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 96.84
2inu_A410 Insulin fructotransferase; right-handed parallel b 96.84
1dbg_A 506 Chondroitinase B; beta helix, polysaccharide lyase 96.7
2qy1_A330 Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca 96.66
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 96.65
1pcl_A355 Pectate lyase E; lyase (acting on polysaccharides) 96.65
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 96.65
2o04_A399 Pectate lyase, PL; hexasaccharide compound II, cal 96.64
1air_A353 Pectate lyase C, PELC; pectate cleavage, pectinoly 96.53
1vbl_A416 Pectate lyase 47; PL 47, thermostable, bacillus su 96.52
1ogo_X574 Dextranase; hydrolase, dextran degradation, glycos 96.41
1pe9_A361 Pectate lyase A; parallel beta helix; 1.60A {Erwin 96.31
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 96.13
1ru4_A400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 95.86
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 95.75
1h80_A464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 94.77
2x6w_A 600 Tail spike protein; viral protein, beta-helix, hyd 92.02
2vbk_A 514 Tailspike-protein; viral adhesion protein, viral p 89.82
3grh_A422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 86.55
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Back     alignment and structure
Probab=100.00  E-value=4.6e-103  Score=781.36  Aligned_cols=343  Identities=46%  Similarity=0.840  Sum_probs=327.8

Q ss_pred             CCcccccccCCcchhhhhcccccCCccccCCCcCCCCCeEEEecCCCCCCCCCCchhHHHhhhCCCCeEEEEeeceEEEe
Q 016398           40 GNPIDDCWRCDSEWESNRKALADCAVGFGRNAVGGRDGEIYIVKSKDDDPVDPIPGSLRYAVIQEEPLWIIFDHDMVINL  119 (390)
Q Consensus        40 ~n~id~~~r~~~~w~~~~~~la~~a~GfG~~ttGG~gG~v~~VT~~~d~~~~~~pGsLr~av~~~~P~~IvF~~~g~I~l  119 (390)
                      +||||+||||+|+|+.+||+||+||||||++||||+||++|+||+++|++++|+|||||+|+++++||||||+++|+|+|
T Consensus         1 ~~~~~~c~~~~~~w~~~~~~~~~~a~Gfg~~ttGG~gG~v~~VT~~~d~~~~~~~GsLr~av~~~~P~~Ivf~~~g~I~l   80 (346)
T 1pxz_A            1 DNPIDSCWRGDSNWDQNRMKLADCAVGFGSSTMGGKGGDFYTVTSTDDNPVNPTPGTLRYGATREKALWIIFSQNMNIKL   80 (346)
T ss_dssp             CCTTHHHHHSSCCTTTCGGGGGGCCCGGGTTCCTTTTSEEEEECCCCCCTTSCCTTSHHHHHHCSSCEEEEESSCEEECC
T ss_pred             CCccchhhccCcchhhhhhhcccCCccccCCCcCCCCccEEEECChHHcccccCcchhHHHhccCCCeEEEEcCCcEEec
Confidence            69999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CceEEeccCceEEecCcceEEec-CCcEEEeccccEEEEceEEEeeccCCCcee-eCCCCCCCCCCCCCCCeEEEeCCcc
Q 016398          120 KQELVMNSYKTIDGRGFNVQMSN-GPCISIYNVSNIIIHNIYIHDCVPAGSAVV-RDSPKHYGPRGRSDGDGISIFGSRD  197 (390)
Q Consensus       120 ~~~L~i~snkTI~G~ga~i~I~~-G~gi~i~~~~NVIIrnL~i~~~~~~~~~~i-~~~~~~~g~~~~~~~DaIsi~gs~n  197 (390)
                      +++|+|+|||||+|||++++|.+ |+||+|++++|||||||+|+++.|.++++| +++++|+|.+...++|+|+|++++|
T Consensus        81 ~~~l~V~sn~TI~G~ga~~~i~G~G~gi~i~~a~NVIIrnl~i~~~~~~~~~~I~~~~~~~~g~~~~~~~DaI~i~~s~n  160 (346)
T 1pxz_A           81 KMPLYVAGHKTIDGRGADVHLGNGGPCLFMRKVSHVILHSLHIHGCNTSVLGDVLVSESIGVEPVHAQDGDAITMRNVTN  160 (346)
T ss_dssp             SSCEECCSSEEEECTTSCEEEETTSCCEEEESCEEEEEESCEEECCCCCCSEEEEEETTTEEEEECCCCCCSEEEESCEE
T ss_pred             CccEEecCCeEEEccCCceEEeCCcceEEEEccCCEEEEeeEEEeeccCCCceEEeccCcccccccCCCCCEEEEecCce
Confidence            99999999999999999999986 689999999999999999999999888888 9999999988889999999999999


Q ss_pred             EEEEeeEEeccccCeEEeeeCCeeEEEEceeeeccCeeeeeccCCCCCCCCcceEEEEeeEecCCCCCCCCcccCceEEE
Q 016398          198 IWIDHCTFSHCYDGLIDIVYGSTAITISNNYMFHHNEVMLMGHSDDFSADKNMQVTIAFNFFGDGLVQRMPRCRHGFFHI  277 (390)
Q Consensus       198 VWIDHcs~s~~~Dglidi~~~s~~ITISnn~f~~H~k~~L~G~sd~~~~d~~~~vTi~~N~f~~n~~~R~Pr~r~G~~hv  277 (390)
                      ||||||+|+|+.||++|+++++++||||||+|++|+|+||+|++|+.+.|+.|+||||||+|++++.+||||+|+|++||
T Consensus       161 VwIDHcs~s~~~Dg~id~~~~s~~vTISnn~f~~H~k~~l~G~sd~~~~d~~~~vT~~~N~f~~~~~~R~Pr~r~g~~hv  240 (346)
T 1pxz_A          161 AWIDHNSLSDCSDGLIDVTLGSTGITISNNHFFNHHKVMLLGHDDTYDDDKSMKVTVAFNQFGPNAGQRMPRARYGLVHV  240 (346)
T ss_dssp             EEEESCEEECCSSEEEEEESSCEEEEEESCEEESEEEEEEESCCSSCGGGGGCEEEEESCEECSSEEECTTEEESSEEEE
T ss_pred             EEEEeeEEecCCCCcEeeccCcceEEEEeeEEecCCceeEECCCCccccCCceEEEEEeeEEeCCccccCccEecceEEE
Confidence            99999999999999999999999999999999999999999999988888889999999999768999999999999999


Q ss_pred             EcceeeCCcceEEecCCCceEEEEecEEEcCCCCCccceeeeccccCccccccCeEeecCceEEeccEEcCCCCCCC-CC
Q 016398          278 VNNIYTGWEMYAIGGSANPTINSQGNVFIASNDESTKEVTKHEIISEDDEWKKWNWRSEGDLMLNGAFFTPSGQETP-AS  356 (390)
Q Consensus       278 vNN~~~~~~~yaigg~~~~~i~~egN~F~~~~~~~~k~vt~r~~~~~~~~~~~~~w~s~gd~~~nG~~f~~sG~~~~-~~  356 (390)
                      +||||++|.+|++++++++++++|+|||++++++..|++++|+++..+.+|++|+|+++||+|+|||+|.+||.... .+
T Consensus       241 ~NN~~~~~~~~~i~~~~~~~i~~egN~F~~~~~~~~k~v~~~~~~~~~~~~~~~~~~~~g~~~~nG~~~~~s~~~~~~~~  320 (346)
T 1pxz_A          241 ANNNYDPWNIYAIGGSSNPTILSEGNSFTAPSESYKKEVTKRIGCESPSACANWVWRSTRDAFINGAYFVSSGKTEETNI  320 (346)
T ss_dssp             ESCEECCCSSCSEEEESCCEEEEESCEEECCSCGGGCBSEEECSCSCHHHHTTSCEEEESCEEETTCBCCCBSCCCCCCC
T ss_pred             EeeEEEcccceEEeccCCceEEEECCEEECCCCCcccccEEEeccCCccccccccEecCCCeEEeceEecCCCCCccCCC
Confidence            99999999999999999999999999999999998899999987733678999999999999999999999998665 35


Q ss_pred             CCCCCceeecCccchHHHhccCcCCCC
Q 016398          357 YMKASSMVARPATSLLTASSPSAGALS  383 (390)
Q Consensus       357 ~~~~~~~~~~pas~~~~~vt~~AGa~~  383 (390)
                      |+++|+|+++|++ +|++|+++||||.
T Consensus       321 y~~~~~~~~~~~~-~v~~~~~~aG~~~  346 (346)
T 1pxz_A          321 YNSNEAFKVENGN-AAPQLTKNAGVVT  346 (346)
T ss_dssp             CCTTTCCCCCCGG-GHHHHTTTCSSCC
T ss_pred             CCcccccccCCHH-HHHHHhhhccCCC
Confidence            9999999999999 9999999999984
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Back     alignment and structure
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Back     alignment and structure
>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Back     alignment and structure
>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Back     alignment and structure
>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Back     alignment and structure
>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Back     alignment and structure
>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Back     alignment and structure
>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Back     alignment and structure
>2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A* Back     alignment and structure
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Back     alignment and structure
>1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A* Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Back     alignment and structure
>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Back     alignment and structure
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Back     alignment and structure
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Back     alignment and structure
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Back     alignment and structure
>2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A* Back     alignment and structure
>1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A* Back     alignment and structure
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Back     alignment and structure
>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* Back     alignment and structure
>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Back     alignment and structure
>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Back     alignment and structure
>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Back     alignment and structure
>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A* Back     alignment and structure
>2vbk_A Tailspike-protein; viral adhesion protein, viral protein, hydrolase, endorhamnosidase, right-handed parallel beta-helix; 1.25A {Enterobacteria phage SF6} PDB: 2vbe_A 2vbm_A* Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 390
d1pxza_346 b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark 1e-140
d1pe9a_361 b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, 5e-80
d1qcxa_359 b.80.1.2 (A:) Pectin lyase {Aspergillus niger, typ 2e-70
d1bn8a_399 b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [Ta 1e-64
d1idka_359 b.80.1.2 (A:) Pectin lyase {Aspergillus niger, typ 2e-62
d1o88a_353 b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, 6e-45
d1hg8a_349 b.80.1.3 (A:) Polygalacturonase {Fusarium monilifo 5e-06
d1czfa_335 b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergill 1e-04
d1ia5a_339 b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergill 2e-04
d1ofla_481 b.80.1.4 (A:) Chondroitinase B {Pedobacter heparin 4e-04
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Length = 346 Back     information, alignment and structure

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectate lyase-like
domain: Major pollen allergen Jun a 1
species: Ozark white cedar (Juniperus ashei) [TaxId: 13101]

 Score =  400 bits (1028), Expect = e-140
 Identities = 158/346 (45%), Positives = 213/346 (61%), Gaps = 4/346 (1%)

Query: 41  NPIDDCWRCDSEWESNRKALADCAVGFGRNAVGGRDGEIYIVKSKDDDPVDPIPGSLRYA 100
           NPID CWR DS W+ NR  LADCAVGFG + +GG+ G+ Y V S DD+PV+P PG+LRY 
Sbjct: 2   NPIDSCWRGDSNWDQNRMKLADCAVGFGSSTMGGKGGDFYTVTSTDDNPVNPTPGTLRYG 61

Query: 101 VIQEEPLWIIFDHDMVINLKQELVMNSYKTIDGRGFNVQMSN-GPCISIYNVSNIIIHNI 159
             +E+ LWIIF  +M I LK  L +  +KTIDGRG +V + N GPC+ +  VS++I+H++
Sbjct: 62  ATREKALWIIFSQNMNIKLKMPLYVAGHKTIDGRGADVHLGNGGPCLFMRKVSHVILHSL 121

Query: 160 YIHDCVPAGSAVVRDSP-KHYGPRGRSDGDGISIFGSRDIWIDHCTFSHCYDGLIDIVYG 218
           +IH C  +    V  S      P    DGD I++    + WIDH + S C DGLID+  G
Sbjct: 122 HIHGCNTSVLGDVLVSESIGVEPVHAQDGDAITMRNVTNAWIDHNSLSDCSDGLIDVTLG 181

Query: 219 STAITISNNYMFHHNEVMLMGHSDDFSADKNMQVTIAFNFFGDGLVQRMPRCRHGFFHIV 278
           ST ITISNN+ F+H++VML+GH D +  DK+M+VT+AFN FG    QRMPR R+G  H+ 
Sbjct: 182 STGITISNNHFFNHHKVMLLGHDDTYDDDKSMKVTVAFNQFGPNAGQRMPRARYGLVHVA 241

Query: 279 NNIYTGWEMYAIGGSANPTINSQGNVFIASNDESTKEVTKHEIISEDDEWKKWNWRSEGD 338
           NN Y  W +YAIGGS+NPTI S+GN F A ++   KEVTK            W WRS  D
Sbjct: 242 NNNYDPWNIYAIGGSSNPTILSEGNSFTAPSESYKKEVTKRIGCESPSACANWVWRSTRD 301

Query: 339 LMLNGAFFTPSGQETPAS-YMKASSMVARPATSLLTASSPSAGALS 383
             +NGA+F  SG+    + Y    +       +     + +AG ++
Sbjct: 302 AFINGAYFVSSGKTEETNIYNSNEAFKVENG-NAAPQLTKNAGVVT 346
>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} Length = 361 Back     information, alignment and structure
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Length = 359 Back     information, alignment and structure
>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} Length = 399 Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Length = 359 Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Length = 353 Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Length = 349 Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Length = 335 Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Length = 339 Back     information, alignment and structure
>d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus [TaxId: 984]} Length = 481 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query390
d1pxza_346 Major pollen allergen Jun a 1 {Ozark white cedar ( 100.0
d1pcla_355 Pectate lyase {Erwinia chrysanthemi, type E [TaxId 100.0
d1qcxa_359 Pectin lyase {Aspergillus niger, type B [TaxId: 50 100.0
d1pe9a_361 Pectate lyase {Erwinia chrysanthemi, type A [TaxId 100.0
d1bn8a_399 Pectate lyase {Bacillus subtilis [TaxId: 1423]} 100.0
d1idka_359 Pectin lyase {Aspergillus niger, type A [TaxId: 50 100.0
d1o88a_353 Pectate lyase {Erwinia chrysanthemi, type C [TaxId 100.0
d1bhea_376 Polygalacturonase {Erwinia carotovora, subsp. caro 98.13
d1ofla_ 481 Chondroitinase B {Pedobacter heparinus [TaxId: 984 98.1
d1bhea_376 Polygalacturonase {Erwinia carotovora, subsp. caro 97.92
d1rmga_422 Rhamnogalacturonase A {Aspergillus aculeatus [TaxI 97.81
d1czfa_335 Polygalacturonase {Fungus (Aspergillus niger), end 97.78
d1ia5a_339 Polygalacturonase {Fungus (Aspergillus aculeatus) 97.63
d1hg8a_349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 97.61
d1ia5a_339 Polygalacturonase {Fungus (Aspergillus aculeatus) 97.6
d1hg8a_349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 97.47
d1nhca_336 Polygalacturonase {Fungus (Aspergillus niger), end 97.43
d1nhca_336 Polygalacturonase {Fungus (Aspergillus niger), end 97.28
d1o88a_353 Pectate lyase {Erwinia chrysanthemi, type C [TaxId 97.27
d1idka_359 Pectin lyase {Aspergillus niger, type A [TaxId: 50 97.12
d1pxza_346 Major pollen allergen Jun a 1 {Ozark white cedar ( 96.95
d1rmga_422 Rhamnogalacturonase A {Aspergillus aculeatus [TaxI 96.94
d1k5ca_333 Polygalacturonase {Fungus (Stereum purpureum), end 96.74
d1qcxa_359 Pectin lyase {Aspergillus niger, type B [TaxId: 50 96.44
d1ofla_ 481 Chondroitinase B {Pedobacter heparinus [TaxId: 984 96.39
d1bn8a_399 Pectate lyase {Bacillus subtilis [TaxId: 1423]} 96.18
d1qjva_342 Pectin methylesterase PemA {Erwinia chrysanthemi [ 95.73
d1k5ca_333 Polygalacturonase {Fungus (Stereum purpureum), end 95.71
d1pcla_355 Pectate lyase {Erwinia chrysanthemi, type E [TaxId 95.45
d1czfa_335 Polygalacturonase {Fungus (Aspergillus niger), end 95.18
d1ru4a_400 Pectate transeliminase {Erwinia chrysanthemi [TaxI 93.6
d1pe9a_361 Pectate lyase {Erwinia chrysanthemi, type A [TaxId 93.49
d1ru4a_400 Pectate transeliminase {Erwinia chrysanthemi [TaxI 93.46
d1ogmx2373 Dextranase, catalytic domain {Penicillium miniolut 93.33
d1gq8a_319 Pectin methylesterase PemA {Carrot (Daucus carota) 93.16
d1ogmx2373 Dextranase, catalytic domain {Penicillium miniolut 92.66
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Back     information, alignment and structure
class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectate lyase-like
domain: Major pollen allergen Jun a 1
species: Ozark white cedar (Juniperus ashei) [TaxId: 13101]

Probab=100.00  E-value=1.6e-97  Score=739.30  Aligned_cols=343  Identities=46%  Similarity=0.840  Sum_probs=316.0

Q ss_pred             CCcccccccCCcchhhhhcccccCCccccCCCcCCCCCeEEEecCCCCCCCCCCchhHHHhhhCCCCeEEEEeeceEEEe
Q 016398           40 GNPIDDCWRCDSEWESNRKALADCAVGFGRNAVGGRDGEIYIVKSKDDDPVDPIPGSLRYAVIQEEPLWIIFDHDMVINL  119 (390)
Q Consensus        40 ~n~id~~~r~~~~w~~~~~~la~~a~GfG~~ttGG~gG~v~~VT~~~d~~~~~~pGsLr~av~~~~P~~IvF~~~g~I~l  119 (390)
                      .||||+||||+|+|+++||+||+||||||++||||+||+||+||+++|++++|+|||||+|++|++||||||+++|+|+|
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~a~Gfg~~ttGG~gG~v~~Vt~l~D~~~~~g~GsLr~a~~~~~pr~IvF~vsg~I~l   80 (346)
T d1pxza_           1 DNPIDSCWRGDSNWDQNRMKLADCAVGFGSSTMGGKGGDFYTVTSTDDNPVNPTPGTLRYGATREKALWIIFSQNMNIKL   80 (346)
T ss_dssp             CCTTHHHHHSSCCTTTCGGGGGGCCCGGGTTCCTTTTSEEEEECCCCCCTTSCCTTSHHHHHHCSSCEEEEESSCEEECC
T ss_pred             CCCcccccCCCCCHHHHHHhhhhccccccCCCcCCCCceEEEecChhhccccCCCccHHHHhhCCCCeEEEEeccEEEec
Confidence            49999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CceEEeccCceEEecCcceEEec-CCcEEEeccccEEEEceEEEeeccCCCceeeCCCC-CCCCCCCCCCCeEEEeCCcc
Q 016398          120 KQELVMNSYKTIDGRGFNVQMSN-GPCISIYNVSNIIIHNIYIHDCVPAGSAVVRDSPK-HYGPRGRSDGDGISIFGSRD  197 (390)
Q Consensus       120 ~~~L~i~snkTI~G~ga~i~I~~-G~gi~i~~~~NVIIrnL~i~~~~~~~~~~i~~~~~-~~g~~~~~~~DaIsi~gs~n  197 (390)
                      +++|.|+|||||+|||++++|.+ |.+|.++.++|||||||+||++++..++.+..++. +.+....+++|+|+|++++|
T Consensus        81 ~~~L~v~sn~TI~G~ga~~~i~~~G~~i~i~~~~NVIirnl~i~~~~~~~~~~~~~~~~~~~~~~~~~~gDai~i~~s~n  160 (346)
T d1pxza_          81 KMPLYVAGHKTIDGRGADVHLGNGGPCLFMRKVSHVILHSLHIHGCNTSVLGDVLVSESIGVEPVHAQDGDAITMRNVTN  160 (346)
T ss_dssp             SSCEECCSSEEEECTTSCEEEETTSCCEEEESCEEEEEESCEEECCCCCCSEEEEEETTTEEEEECCCCCCSEEEESCEE
T ss_pred             cceEEeCCCceEEccCCCceEeeecceEEEecCCEEEEeceEEecCcccCCcccccccccCccccccCCCceeeeecCce
Confidence            99999999999999999999884 55699999999999999999998776665443332 22223357899999999999


Q ss_pred             EEEEeeEEeccccCeEEeeeCCeeEEEEceeeeccCeeeeeccCCCCCCCCcceEEEEeeEecCCCCCCCCcccCceEEE
Q 016398          198 IWIDHCTFSHCYDGLIDIVYGSTAITISNNYMFHHNEVMLMGHSDDFSADKNMQVTIAFNFFGDGLVQRMPRCRHGFFHI  277 (390)
Q Consensus       198 VWIDHcs~s~~~Dglidi~~~s~~ITISnn~f~~H~k~~L~G~sd~~~~d~~~~vTi~~N~f~~n~~~R~Pr~r~G~~hv  277 (390)
                      ||||||+|+|+.||+||+++++++||||||+|++|+|++|+|+++....++.++||||||+|.++..+|+|++|+|++||
T Consensus       161 vwIDH~s~s~~~D~~idi~~~s~~vTis~~~f~~~~~~~~~G~~~~~~~~~~~~vT~hhN~~~~n~~r~~p~~r~g~~hv  240 (346)
T d1pxza_         161 AWIDHNSLSDCSDGLIDVTLGSTGITISNNHFFNHHKVMLLGHDDTYDDDKSMKVTVAFNQFGPNAGQRMPRARYGLVHV  240 (346)
T ss_dssp             EEEESCEEECCSSEEEEEESSCEEEEEESCEEESEEEEEEESCCSSCGGGGGCEEEEESCEECSSEEECTTEEESSEEEE
T ss_pred             EEEECcEeeccccCceeEecCCEEEEEEeeEEccCccccccCCCcccccCCCceEEEEccccCCCcccCCCccccceEEE
Confidence            99999999999999999999999999999999999999999999887777889999999999888899999999999999


Q ss_pred             EcceeeCCcceEEecCCCceEEEEecEEEcCCCCCccceeeeccccCccccccCeEeecCceEEeccEEcCCCCCCC-CC
Q 016398          278 VNNIYTGWEMYAIGGSANPTINSQGNVFIASNDESTKEVTKHEIISEDDEWKKWNWRSEGDLMLNGAFFTPSGQETP-AS  356 (390)
Q Consensus       278 vNN~~~~~~~yaigg~~~~~i~~egN~F~~~~~~~~k~vt~r~~~~~~~~~~~~~w~s~gd~~~nG~~f~~sG~~~~-~~  356 (390)
                      +||||++|..|++++++++++++|+|||++++.+..|+++++.......+|+.|+|++++|+++||++|.++|.... ..
T Consensus       241 ~NN~~~n~~~~~~~~~~~~~v~~e~N~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~d~~~nga~~~~sg~~~~~~~  320 (346)
T d1pxza_         241 ANNNYDPWNIYAIGGSSNPTILSEGNSFTAPSESYKKEVTKRIGCESPSACANWVWRSTRDAFINGAYFVSSGKTEETNI  320 (346)
T ss_dssp             ESCEECCCSSCSEEEESCCEEEEESCEEECCSCGGGCBSEEECSCSCHHHHTTSCEEEESCEEETTCBCCCBSCCCCCCC
T ss_pred             ECcEeecCccEEEeccCceEEEEEeeEEECCCCccceeeecccccCCccccccceeeccCceeeccceeccCCCcccccc
Confidence            99999999999999999999999999999999998899998877655567999999999999999999999987654 57


Q ss_pred             CCCCCceeecCccchHHHhccCcCCCC
Q 016398          357 YMKASSMVARPATSLLTASSPSAGALS  383 (390)
Q Consensus       357 ~~~~~~~~~~pas~~~~~vt~~AGa~~  383 (390)
                      |.++|+|+++|++ .|++|+++||||+
T Consensus       321 ~~~~~~y~~~~as-~V~~v~~~AGal~  346 (346)
T d1pxza_         321 YNSNEAFKVENGN-AAPQLTKNAGVVT  346 (346)
T ss_dssp             CCTTTCCCCCCGG-GHHHHTTTCSSCC
T ss_pred             ccCccccccCCHH-HHHhhhccCCCCC
Confidence            8999999999999 8889999999995
>d1pcla_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type E [TaxId: 556]} Back     information, alignment and structure
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Back     information, alignment and structure
>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} Back     information, alignment and structure
>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure
>d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus [TaxId: 984]} Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Back     information, alignment and structure
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Back     information, alignment and structure
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Back     information, alignment and structure
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Back     information, alignment and structure
>d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus [TaxId: 984]} Back     information, alignment and structure
>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Back     information, alignment and structure
>d1pcla_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type E [TaxId: 556]} Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure
>d1ru4a_ b.80.1.9 (A:) Pectate transeliminase {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} Back     information, alignment and structure
>d1ru4a_ b.80.1.9 (A:) Pectate transeliminase {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Back     information, alignment and structure
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Back     information, alignment and structure