Citrus Sinensis ID: 016400

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390
MDSSDDEKDGVYGNHIPKELNHNLPSNGMKFVDEVLNGQSERCLENFRMDKKVFYKLCDILQSKGLLRHTNRIKIEEQLAIFMFIVGHNLRTRAVQELFRYSGETISRHFNNVLNAIMAISLDFFQPPGPDVPPEISLDPRLYPYFKDCVGAVDGIHIPVMVGVDEQGPFRNKSGLLSQNVLAACSFDLKFHYVLAGWEGSASDLRVLNSALTRRNKLQVPEGKYYLVDNKYANMPGFIAPYQAVSYHTNQTTTGYHPQDAKELFNQRHSLLRNATDRIFGALKERFPILLSAPPYPLQTQVKLVVAACALHNYIQREKPDDWLFRMYEQDTLLPMAESLLPLEGEQPIVHVDTRALEFGFQTEQLELASHFRDSIATEMWDDYISGLAS
cccccccccccccccccccccccccccHHHHHHHHHcccHHHHHHHccccHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHcccccHHHHHHHHcccHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHcccccccccccccccEEEEEEEEEccccccccccccccccEEEEEEccccccEEEEEcccccccccHHHHHHHHHHccccccccccEEEcccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHccc
ccccHHHHccHHHccccccccccccccHHHHHHHHHcccHHHHHHHHcccHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHccccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHccccccccccccEEEEcccEEEEEEcHHHHHHHcccccccEEEEEEEEccccEEEEEEccccccccHHHHHHHHHHHcccccccccEEEEEcccccccccEcccccccEEccHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHccHHHHHHHHHHHHHHHHHccccccHcccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccc
mdssddekdgvygnhipkelnhnlpsngMKFVDEVLNGQSERCLENFRMDKKVFYKLCDILQskgllrhtnrIKIEEQLAIFMFIVGHNLRTRAVQELFRYSGETISRHFNNVLNAIMAISLdffqppgpdvppeisldprlypyfkdcvgavdgihipvmvgvdeqgpfrnksgllsQNVLAACSFDLKFHYVLAGWEGSASDLRVLNSALTrrnklqvpegkyylvdnkyanmpgfiapyqavsyhtnqtttgyhpqdaKELFNQRHSLLRNATDRIFGALKErfpillsappyplqtQVKLVVAACALHNyiqrekpddwLFRMYEQdtllpmaesllplegeqpivhvdtralefGFQTEQLELASHFRDSIATEMWDDYISGLAS
mdssddekdgvygnhipkelnhnlpsNGMKFVDEVLNGQSERCLENFRMDKKVFYKLCDILQSKGLLRHTNRIKIEEQLAIFMFIVGHNLRTRAVQELFRYSGETISRHFNNVLNAIMAISLDFFQPPGPDVPPEISLDPRLYPYFKDCVGAVDGIHIPVMVGVDEQGPFRNKSGLLSQNVLAACSFDLKFHYVLAGWEGSASDLRVLNSAltrrnklqvpegKYYLVDNKYANMPGFIAPYQAVSYHTNQTTTGYHPQDAKELFNQRHSLLRNATDRIFGALKERFPILLSAPPYPLQTQVKLVVAACALHnyiqrekpddwLFRMYEQDTLLPMAESLLPLEGEQPIVHVDTRALEFGFQTEQLELASHFRDSIATEMWDDYISGLAS
MDSSDDEKDGVYGNHIPKELNHNLPSNGMKFVDEVLNGQSERCLENFRMDKKVFYKLCDILQSKGLLRHTNRIKIEEQLAIFMFIVGHNLRTRAVQELFRYSGETISRHFNNVLNAIMAISLDFFQPPGPDVPPEISLDPRLYPYFKDCVGAVDGIHIPVMVGVDEQGPFRNKSGLLSQNVLAACSFDLKFHYVLAGWEGSASDLRVLNSALTRRNKLQVPEGKYYLVDNKYANMPGFIAPYQAVSYHTNQTTTGYHPQDAKELFNQRHSLLRNATDRIFGALKERFPILLSAPPYPLQTQVKLVVAACALHNYIQREKPDDWLFRMYEQDTLLPMAESLLPLEGEQPIVHVDTRALEFGFQTEQLELASHFRDSIATEMWDDYISGLAS
****************************MKFVDEVLNGQSERCLENFRMDKKVFYKLCDILQSKGLLRHTNRIKIEEQLAIFMFIVGHNLRTRAVQELFRYSGETISRHFNNVLNAIMAISLDFFQPPGPDVPPEISLDPRLYPYFKDCVGAVDGIHIPVMVGVDEQGPFRNKSGLLSQNVLAACSFDLKFHYVLAGWEGSASDLRVLNSALTRRNKLQVPEGKYYLVDNKYANMPGFIAPYQAVSYHTNQTTTGYHPQDAKELFNQRHSLLRNATDRIFGALKERFPILLSAPPYPLQTQVKLVVAACALHNYIQREKPDDWLFRMYEQDTLLPMAESLLPLEGEQPIVHVDTRALEFGFQTEQLELASHFRDSIATEMWDDYIS****
****DDEKDGVYGNHIPKE*****PSNGMKFVDEVLNGQSERCLENFRMDKKVFYKLCDILQSKGLL****RIKIEEQLAIFMFIVGHNLRTRAVQELFRYSGETISRHFNNVLNAIMAISLDFFQPPGPDVPPEISLDPRLYPYFKDCVGAVDGIHIPVMVGVDEQGPFRNKSGLLSQNVLAACSFDLKFHYVLAGWEGSASDLRVLNSALTRRNKLQVPEGKYYLVDNKYANMPGFIAPYQAVSYHTNQTTT****QDAKELFNQRHSLLRNATDRIFGALKERFPILLSAPPYPLQTQVKLVVAACALHNYIQREKPDDWLFRMYEQDTLLPM*****************************LELASHFRDSIATEMWDDYISGL**
*********GVYGNHIPKELNHNLPSNGMKFVDEVLNGQSERCLENFRMDKKVFYKLCDILQSKGLLRHTNRIKIEEQLAIFMFIVGHNLRTRAVQELFRYSGETISRHFNNVLNAIMAISLDFFQPPGPDVPPEISLDPRLYPYFKDCVGAVDGIHIPVMVGVDEQGPFRNKSGLLSQNVLAACSFDLKFHYVLAGWEGSASDLRVLNSALTRRNKLQVPEGKYYLVDNKYANMPGFIAPYQAVSYHTNQTTTGYHPQDAKELFNQRHSLLRNATDRIFGALKERFPILLSAPPYPLQTQVKLVVAACALHNYIQREKPDDWLFRMYEQDTLLPMAESLLPLEGEQPIVHVDTRALEFGFQTEQLELASHFRDSIATEMWDDYISGLAS
********DGVYGNHIPKELNHNLPSNGMKFVDEVLNGQSERCLENFRMDKKVFYKLCDILQSKGLLRHTNRIKIEEQLAIFMFIVGHNLRTRAVQELFRYSGETISRHFNNVLNAIMAISLDFFQPPGPDVPPEISLDPRLYPYFKDCVGAVDGIHIPVMVGVDEQGPFRNKSGLLSQNVLAACSFDLKFHYVLAGWEGSASDLRVLNSALTRRNKLQVPEGKYYLVDNKYANMPGFIAPYQAVSYHTNQTTTGYHPQDAKELFNQRHSLLRNATDRIFGALKERFPILLSAPPYPLQTQVKLVVAACALHNYIQREKPDDWLFRMYE********************************QTEQLELASHFRDSIATEMWDDYIS****
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MDSSDDEKDGVYGNHIPKELNHNLPSNGMKFVDEVLNGQSERCLENFRMDKKVFYKLCDILQSKGLLRHTNRIKIEEQLAIFMFIVGHNLRTRAVQELFRYSGETISRHFNNVLNAIMAISLDFFQPPGPDVPPEISLDPRLYPYFKDCVGAVDGIHIPVMVGVDEQGPFRNKSGLLSQNVLAACSFDLKFHYVLAGWEGSASDLRVLNSALTRRNKLQVPEGKYYLVDNKYANMPGFIAPYQAVSYHTNQTTTGYHPQDAKELFNQRHSLLRNATDRIFGALKERFPILLSAPPYPLQTQVKLVVAACALHNYIQREKPDDWLFRMYEQDTLLPMAESLLPLEGEQPIVHVDTRALEFGFQTEQLELASHFRDSIATEMWDDYISGLAS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query390 2.2.26 [Sep-21-2011]
B0BN95349 Putative nuclease HARBI1 yes no 0.710 0.793 0.25 1e-12
Q96MB7349 Putative nuclease HARBI1 yes no 0.710 0.793 0.243 3e-11
Q17QR8349 Putative nuclease HARBI1 yes no 0.710 0.793 0.240 7e-11
Q6AZB8349 Putative nuclease HARBI1 no no 0.671 0.750 0.238 5e-07
Q5U538347 Putative nuclease HARBI1 N/A no 0.664 0.746 0.235 6e-05
>sp|B0BN95|HARB1_RAT Putative nuclease HARBI1 OS=Rattus norvegicus GN=Harbi1 PE=2 SV=1 Back     alignment and function desciption
 Score = 74.3 bits (181), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 79/316 (25%), Positives = 126/316 (39%), Gaps = 39/316 (12%)

Query: 32  VDEVLNGQSERCLENFRMD--------------KKVFYKLCDILQSKGLLRHTNR---IK 74
            D +L G+  R L+ F++D              ++  Y L ++L +  L R T R   I 
Sbjct: 10  CDLLLYGRGHRTLDRFKLDDVTDEYLMSMYGFPRQFIYYLVELLGAS-LSRPTQRSRAIS 68

Query: 75  IEEQ-LAIFMFIVGHNLRTRAVQELFRYSGETISRHFNNVLNAIMAISLDFFQPPGPDVP 133
            E Q LA   F    + +TR + +    S  ++SR   NV  A++  +  F   P  +  
Sbjct: 69  PETQILAALGFYTSGSFQTR-MGDAIGISQASMSRCVANVTEALVERASQFIHFPADEAA 127

Query: 134 PEISLDPRLYPY--FKDCVGAVDGIHIPVMVGVDEQGPFRNKSGLLSQNVLAACSFDLKF 191
            + SL    Y        +GAVD IH+ +     E   + N+ GL S N L  C      
Sbjct: 128 IQ-SLKDEFYGLAGMPGVIGAVDCIHVAIKAPNAEDLSYVNRKGLHSLNCLVVCDIRGAL 186

Query: 192 HYVLAGWEGSASDLRVL-NSALTRRNKLQVPEGKYYLVDNKYANMPGFIAPYQAVSYHTN 250
             V   W GS  D  VL  S+L+ + +  +P+  + L D+ +     F+  +     H  
Sbjct: 187 MTVETSWPGSLQDCAVLQQSSLSSQFETGMPKDSWLLGDSSF-----FLHTWLLTPLHIP 241

Query: 251 QTTTGYHPQDAKELFNQRHSLLRNATDRIFGALKERFPIL---LSAPPYPLQTQVKLVVA 307
           +T   Y        +N+ HS   +  ++    L  RF  L     A  Y  +    +++A
Sbjct: 242 ETPAEYR-------YNRAHSATHSVIEKTLRTLCCRFRCLDGSKGALQYSPEKSSHIILA 294

Query: 308 ACALHNYIQREKPDDW 323
            C LHN       D W
Sbjct: 295 CCVLHNISLEHGMDVW 310
Transposase-derived protein that may have nuclease activity (Potential). Does not have transposase activity.
Rattus norvegicus (taxid: 10116)
EC: 3EC: .EC: 1EC: .EC: -EC: .EC: -
>sp|Q96MB7|HARB1_HUMAN Putative nuclease HARBI1 OS=Homo sapiens GN=HARBI1 PE=1 SV=1 Back     alignment and function description
>sp|Q17QR8|HARB1_BOVIN Putative nuclease HARBI1 OS=Bos taurus GN=HARBI1 PE=2 SV=1 Back     alignment and function description
>sp|Q6AZB8|HARB1_DANRE Putative nuclease HARBI1 OS=Danio rerio GN=harbi1 PE=2 SV=1 Back     alignment and function description
>sp|Q5U538|HARB1_XENLA Putative nuclease HARBI1 OS=Xenopus laevis GN=harbi1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query390
255579925390 conserved hypothetical protein [Ricinus 0.997 0.997 0.792 0.0
225456199390 PREDICTED: uncharacterized protein LOC10 0.987 0.987 0.805 0.0
449439467392 PREDICTED: uncharacterized protein LOC10 0.997 0.992 0.774 0.0
449526788392 PREDICTED: LOW QUALITY PROTEIN: uncharac 0.997 0.992 0.771 1e-180
356520675387 PREDICTED: uncharacterized protein LOC10 0.982 0.989 0.747 1e-171
356529493392 PREDICTED: uncharacterized protein LOC10 0.982 0.977 0.752 1e-171
357499113390 hypothetical protein MTR_6g069810 [Medic 0.987 0.987 0.686 1e-153
15238244374 uncharacterized protein [Arabidopsis tha 0.941 0.981 0.641 1e-137
225463187391 PREDICTED: putative nuclease HARBI1-like 0.923 0.920 0.513 1e-103
356530983481 PREDICTED: uncharacterized protein LOC10 0.928 0.752 0.494 3e-96
>gi|255579925|ref|XP_002530798.1| conserved hypothetical protein [Ricinus communis] gi|223529653|gb|EEF31599.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
 Score =  657 bits (1696), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 309/390 (79%), Positives = 352/390 (90%), Gaps = 1/390 (0%)

Query: 1   MDSSDDEKDGVYGNHIPKELNHNLPSNGMKFVDEVLNGQSERCLENFRMDKKVFYKLCDI 60
           M++SD+EKDG +GN++PKEL+ ++ +NG KFVDEVL GQS+RCLENFRMDK+VFYKLCDI
Sbjct: 1   MENSDEEKDGGFGNYMPKELSMSV-ANGTKFVDEVLAGQSDRCLENFRMDKQVFYKLCDI 59

Query: 61  LQSKGLLRHTNRIKIEEQLAIFMFIVGHNLRTRAVQELFRYSGETISRHFNNVLNAIMAI 120
           LQ+KGLLRHTNRIKIEEQLAIF+FIVGHNLRTRAVQELFRYSGETISRHFNNVLNAIMAI
Sbjct: 60  LQAKGLLRHTNRIKIEEQLAIFLFIVGHNLRTRAVQELFRYSGETISRHFNNVLNAIMAI 119

Query: 121 SLDFFQPPGPDVPPEISLDPRLYPYFKDCVGAVDGIHIPVMVGVDEQGPFRNKSGLLSQN 180
           SLDFF PPG DVP EI  DPR YPYFKDCVGAVDGIHIPVMVGVDEQGPFR+K+GLLSQN
Sbjct: 120 SLDFFHPPGSDVPSEILGDPRFYPYFKDCVGAVDGIHIPVMVGVDEQGPFRDKNGLLSQN 179

Query: 181 VLAACSFDLKFHYVLAGWEGSASDLRVLNSALTRRNKLQVPEGKYYLVDNKYANMPGFIA 240
           VLAACSFDLKFHYVLAGWEGSASDLRVLNSAL RRNKL VPE KYY+VD+KYAN+PGFIA
Sbjct: 180 VLAACSFDLKFHYVLAGWEGSASDLRVLNSALKRRNKLMVPEDKYYVVDSKYANLPGFIA 239

Query: 241 PYQAVSYHTNQTTTGYHPQDAKELFNQRHSLLRNATDRIFGALKERFPILLSAPPYPLQT 300
           PY  + + +++ ++ YHPQD +ELFNQRHSLLRNATDRIFGALK RFPIL+SAPPYPLQT
Sbjct: 240 PYNGIPHRSDEYSSAYHPQDPRELFNQRHSLLRNATDRIFGALKARFPILMSAPPYPLQT 299

Query: 301 QVKLVVAACALHNYIQREKPDDWLFRMYEQDTLLPMAESLLPLEGEQPIVHVDTRALEFG 360
           QVKLVVAACA+HNYI+REKPDD +FRMYE D++L M ESL PLE EQP++ V+ +AL+ G
Sbjct: 300 QVKLVVAACAIHNYIRREKPDDLIFRMYEHDSILQMEESLPPLEMEQPMMQVEEQALDIG 359

Query: 361 FQTEQLELASHFRDSIATEMWDDYISGLAS 390
           F TEQLE +S  RDSIA+ +WDDYI  L++
Sbjct: 360 FDTEQLEFSSQLRDSIASSLWDDYIRDLSA 389

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225456199|ref|XP_002282832.1| PREDICTED: uncharacterized protein LOC100262931 [Vitis vinifera] gi|147776987|emb|CAN67849.1| hypothetical protein VITISV_033748 [Vitis vinifera] Back     alignment and taxonomy information
>gi|449439467|ref|XP_004137507.1| PREDICTED: uncharacterized protein LOC101221521 [Cucumis sativus] Back     alignment and taxonomy information
>gi|449526788|ref|XP_004170395.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized LOC101221521 [Cucumis sativus] Back     alignment and taxonomy information
>gi|356520675|ref|XP_003528986.1| PREDICTED: uncharacterized protein LOC100778909 [Glycine max] Back     alignment and taxonomy information
>gi|356529493|ref|XP_003533325.1| PREDICTED: uncharacterized protein LOC100779133 [Glycine max] Back     alignment and taxonomy information
>gi|357499113|ref|XP_003619845.1| hypothetical protein MTR_6g069810 [Medicago truncatula] gi|355494860|gb|AES76063.1| hypothetical protein MTR_6g069810 [Medicago truncatula] Back     alignment and taxonomy information
>gi|15238244|ref|NP_199013.1| uncharacterized protein [Arabidopsis thaliana] gi|9757943|dbj|BAB08431.1| unnamed protein product [Arabidopsis thaliana] gi|28416671|gb|AAO42866.1| At5g41980 [Arabidopsis thaliana] gi|110743283|dbj|BAE99532.1| hypothetical protein [Arabidopsis thaliana] gi|332007366|gb|AED94749.1| uncharacterized protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|225463187|ref|XP_002267524.1| PREDICTED: putative nuclease HARBI1-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|356530983|ref|XP_003534058.1| PREDICTED: uncharacterized protein LOC100811756 [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query390
TAIR|locus:2165775374 AT5G41980 [Arabidopsis thalian 0.948 0.989 0.636 4.2e-127
TAIR|locus:504956234324 AT1G43722 "AT1G43722" [Arabido 0.697 0.839 0.347 3.9e-37
TAIR|locus:2148690148 AT5G28950 "AT5G28950" [Arabido 0.233 0.614 0.608 2.9e-29
TAIR|locus:504954841211 AT5G35695 [Arabidopsis thalian 0.448 0.829 0.388 8.7e-24
TAIR|locus:2184226296 AT5G28730 "AT5G28730" [Arabido 0.176 0.233 0.471 1.3e-20
ZFIN|ZDB-GENE-050327-32415 zgc:113227 "zgc:113227" [Danio 0.687 0.645 0.246 1.3e-10
RGD|1584007349 Harbi1 "harbinger transposase 0.687 0.767 0.249 4e-10
UNIPROTKB|E2RCW9349 HARBI1 "Uncharacterized protei 0.687 0.767 0.242 1.9e-09
UNIPROTKB|F1SIA2349 HARBI1 "Uncharacterized protei 0.687 0.767 0.245 1.9e-09
UNIPROTKB|Q96MB7349 HARBI1 "Putative nuclease HARB 0.687 0.767 0.242 3.3e-09
TAIR|locus:2165775 AT5G41980 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1248 (444.4 bits), Expect = 4.2e-127, P = 4.2e-127
 Identities = 249/391 (63%), Positives = 303/391 (77%)

Query:     1 MDSSDDEKDGVYGNHIPKELNHNLPSNGMKFVDEVLNGQSERCLENFRMDKKVFYKLCDI 60
             +   +D+++ V    +PKE++    S+G KFV ++LNG +E+C ENFRMDK VFYKLCD+
Sbjct:     3 ISGEEDKEEAVT---LPKEVSKISISDGNKFVYQILNGPNEQCFENFRMDKPVFYKLCDL 59

Query:    61 LQSKGLLRHTNRIKIEEQLAIFMFIVGHNLRTRAVQELFRYSGETISRHFNNVLNAIMAI 120
             LQ++GLLRHTNRIKIE QLAIF+FI+GHNLRTRAVQELF YSGETISRHFNNVLNA++AI
Sbjct:    60 LQTRGLLRHTNRIKIEAQLAIFLFIIGHNLRTRAVQELFCYSGETISRHFNNVLNAVIAI 119

Query:   121 SLDFFQPPGPDVPPEISLDPRLYPYFKDCVGAVDGIHIPVMVGVDEQGPFRNKSGLLSQN 180
             S DFFQP        +  D    PYFKDCVG VD  HIPVMVGVDEQGPFRN +GLL+QN
Sbjct:   120 SKDFFQPNSNS--DTLENDD---PYFKDCVGVVDSFHIPVMVGVDEQGPFRNGNGLLTQN 174

Query:   181 VLAACSFDLKFHYVLAGWEGSASDLRVLNSALTRRNKLQVPEGKYYLVDNKYANMPGFIA 240
             VLAA SFDL+F+YVLAGWEGSASD +VLN+ALTRRNKLQVP+GKYY+VDNKY N+PGFIA
Sbjct:   175 VLAASSFDLRFNYVLAGWEGSASDQQVLNAALTRRNKLQVPQGKYYIVDNKYPNLPGFIA 234

Query:   241 PYQAVSYHTNQTTTGYHPQDAKELFNQRHSLLRNATDRIFGALKERFPILLSAPPYPLQT 300
             PY  VS  TN        ++AKE+FN+RH LL  A  R FGALKERFPILLSAPPYPLQT
Sbjct:   235 PYHGVS--TNSR------EEAKEMFNERHKLLHRAIHRTFGALKERFPILLSAPPYPLQT 286

Query:   301 QVKLVVAACALHNYIQREKPDDWLFRMYEQDTLLPMAESL-LPLEGEQPIVHVDTRALEF 359
             QVKLV+AACALHNY++ EKPDD +FRM+E++TL    E   + LE EQ    V+    E 
Sbjct:   287 QVKLVIAACALHNYVRLEKPDDLVFRMFEEETLAEAGEDREVALEEEQ----VEIVGQEH 342

Query:   360 GFQTEQLELASHFRDSIATEMWDDYISGLAS 390
             GF+ E++E +   RD IA+E+W+ Y+  +++
Sbjct:   343 GFRPEEVEDSLRLRDEIASELWNHYVQNMST 373
GO:0005634 "nucleus" evidence=ISM
GO:0016788 "hydrolase activity, acting on ester bonds" evidence=IEA
TAIR|locus:504956234 AT1G43722 "AT1G43722" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2148690 AT5G28950 "AT5G28950" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:504954841 AT5G35695 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2184226 AT5G28730 "AT5G28730" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-050327-32 zgc:113227 "zgc:113227" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
RGD|1584007 Harbi1 "harbinger transposase derived 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|E2RCW9 HARBI1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1SIA2 HARBI1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q96MB7 HARBI1 "Putative nuclease HARBI1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query390
pfam13359155 pfam13359, DDE_4, DDE superfamily endonuclease 2e-27
pfam04827205 pfam04827, Plant_tran, Plant transposon protein 7e-04
>gnl|CDD|222071 pfam13359, DDE_4, DDE superfamily endonuclease Back     alignment and domain information 
 Score =  105 bits (265), Expect = 2e-27
 Identities = 48/166 (28%), Positives = 68/166 (40%), Gaps = 16/166 (9%)

Query: 153 VDGIHIPVMVGVDEQG---PFRNKSGLLSQNVLAACSFDLKFHYVLAGWEGSASDLRVL- 208
           +DG  IP+      +     +       +  VL     D +  +V  GW GS SD R+L 
Sbjct: 1   IDGTEIPIERPKSLEEQAQTYSGYKKHNTLKVLIVVDPDGRIIFVSVGWPGSVSDKRILE 60

Query: 209 NSALTRRNKLQVPEGKYYLVDNKYANMPGFIAPYQAVSYHTNQTTTGYHPQDAKELFNQR 268
           NS L      ++P G Y L D  +      +AP          T       + +  FN+R
Sbjct: 61  NSGL----LEKLPPGDYVLADRGFPLSDSLLAPPAKKPGGAQLT-------EEEVEFNRR 109

Query: 269 HSLLRNATDRIFGALKERFPILLSAPPY-PLQTQVKLVVAACALHN 313
            +  R   +R+ G LK RF IL        L T  K+V+  CALHN
Sbjct: 110 IASARIHVERVIGRLKGRFRILRGRLRISKLTTLDKIVLVCCALHN 155

This family of proteins are related to pfam00665 and are probably endonucleases of the DDE superfamily. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction. Length = 155
>gnl|CDD|203098 pfam04827, Plant_tran, Plant transposon protein Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 390
KOG4585326 consensus Predicted transposase [Replication, reco 100.0
PF04827205 Plant_tran: Plant transposon protein; InterPro: IP 100.0
PF13359158 DDE_Tnp_4: DDE superfamily endonuclease 100.0
PF1361353 HTH_Tnp_4: Helix-turn-helix of DDE superfamily end 98.94
PF13612155 DDE_Tnp_1_3: Transposase DDE domain 98.9
PF01609213 DDE_Tnp_1: Transposase DDE domain; InterPro: IPR00 98.09
PF1358688 DDE_Tnp_1_2: Transposase DDE domain 97.16
PF1393644 HTH_38: Helix-turn-helix domain; PDB: 2W48_A. 96.28
PF0454550 Sigma70_r4: Sigma-70, region 4; InterPro: IPR00763 96.2
PF0421853 CENP-B_N: CENP-B N-terminal DNA-binding domain; In 95.59
PF0828154 Sigma70_r4_2: Sigma-70, region 4; InterPro: IPR013 95.5
PF0279645 HTH_7: Helix-turn-helix domain of resolvase; Inter 95.42
PF1338450 HTH_23: Homeodomain-like domain; PDB: 2X48_C. 94.98
PF1211682 SpoIIID: Stage III sporulation protein D; InterPro 94.68
PF1351852 HTH_28: Helix-turn-helix domain 94.55
PF0522545 HTH_psq: helix-turn-helix, Psq domain; InterPro: I 93.99
smart00351125 PAX Paired Box domain. 93.83
COG3415138 Transposase and inactivated derivatives [DNA repli 93.53
PF1301185 LZ_Tnp_IS481: leucine-zipper of insertion element 93.42
PF1334075 DUF4096: Putative transposase of IS4/5 family (DUF 93.29
cd00131128 PAX Paired Box domain 93.02
PRK09413121 IS2 repressor TnpA; Reviewed 92.68
PF0152776 HTH_Tnp_1: Transposase; InterPro: IPR002514 Transp 92.65
smart0042158 HTH_LUXR helix_turn_helix, Lux Regulon. lux regulo 92.61
PRK04217110 hypothetical protein; Provisional 92.6
TIGR0253188 yecD_yerC TrpR-related protein YerC/YecD. This mod 92.32
cd0617155 Sigma70_r4 Sigma70, region (SR) 4 refers to the mo 91.72
PRK00118104 putative DNA-binding protein; Validated 91.26
PRK09639166 RNA polymerase sigma factor SigX; Provisional 91.04
PF0220936 VHP: Villin headpiece domain; InterPro: IPR003128 90.47
PF1354252 HTH_Tnp_ISL3: Helix-turn-helix domain of transposa 89.96
PRK12529178 RNA polymerase sigma factor; Provisional 89.87
TIGR0387973 near_KaiC_dom probable regulatory domain. This mod 89.61
cd0617057 LuxR_C_like C-terminal DNA-binding domain of LuxR- 89.61
PRK09652182 RNA polymerase sigma factor RpoE; Provisional 89.16
PRK08301234 sporulation sigma factor SigE; Reviewed 88.98
cd0056942 HTH_Hin_like Helix-turn-helix domain of Hin and re 88.88
PF1280262 MarR_2: MarR family; PDB: 3ECO_B 2QWW_B 3KP6_B 3KP 88.76
smart0015336 VHP Villin headpiece domain. 88.72
PRK12519194 RNA polymerase sigma factor; Provisional 88.58
PF0102247 HTH_5: Bacterial regulatory protein, arsR family; 88.44
PRK12522173 RNA polymerase sigma factor; Provisional 87.97
PRK05911257 RNA polymerase sigma factor sigma-28; Reviewed 87.96
TIGR02989159 Sig-70_gvs1 RNA polymerase sigma-70 factor, Rhodop 87.6
PRK07037163 extracytoplasmic-function sigma-70 factor; Validat 87.57
TIGR02999183 Sig-70_X6 RNA polymerase sigma factor, TIGR02999 f 87.52
TIGR02952170 Sig70_famx2 RNA polymerase sigma-70 factor, TIGR02 87.47
PRK09415179 RNA polymerase factor sigma C; Reviewed 87.46
cd0657190 Bac_DnaA_C C-terminal domain of bacterial DnaA pro 87.4
PRK09047161 RNA polymerase factor sigma-70; Validated 87.3
PRK12537182 RNA polymerase sigma factor; Provisional 87.25
COG1595182 RpoE DNA-directed RNA polymerase specialized sigma 87.23
TIGR00721137 tfx DNA-binding protein, Tfx family. Tfx from Meth 87.22
PF0035646 LacI: Bacterial regulatory proteins, lacI family; 87.21
PF0132560 Fe_dep_repress: Iron dependent repressor, N-termin 87.19
PF0496753 HTH_10: HTH DNA binding domain; InterPro: IPR00705 87.14
PRK12530189 RNA polymerase sigma factor; Provisional 87.0
PF0019658 GerE: Bacterial regulatory proteins, luxR family; 86.97
PRK12511182 RNA polymerase sigma factor; Provisional 86.96
PF1341248 HTH_24: Winged helix-turn-helix DNA-binding; PDB: 86.81
PRK12528161 RNA polymerase sigma factor; Provisional 86.71
PRK12514179 RNA polymerase sigma factor; Provisional 86.69
PRK05803233 sporulation sigma factor SigK; Reviewed 86.67
PRK12547164 RNA polymerase sigma factor; Provisional 86.61
PRK15320251 transcriptional activator SprB; Provisional 86.56
TIGR02983162 SigE-fam_strep RNA polymerase sigma-70 factor, sig 86.53
PF13751125 DDE_Tnp_1_6: Transposase DDE domain 86.52
TIGR02985161 Sig70_bacteroi1 RNA polymerase sigma-70 factor, Ba 86.48
PRK12533216 RNA polymerase sigma factor; Provisional 86.42
PRK12525168 RNA polymerase sigma factor; Provisional 86.37
TIGR0132194 TrpR trp operon repressor, proteobacterial. This m 86.26
TIGR02937158 sigma70-ECF RNA polymerase sigma factor, sigma-70 86.24
PRK09642160 RNA polymerase sigma factor SigW; Reviewed 86.15
PRK12516187 RNA polymerase sigma factor; Provisional 86.1
PRK09638176 RNA polymerase sigma factor SigY; Reviewed 86.06
PRK09641187 RNA polymerase sigma factor SigW; Provisional 85.64
PRK12524196 RNA polymerase sigma factor; Provisional 85.61
TIGR02950154 SigM_subfam RNA polymerase sigma factor, SigM fami 85.55
PRK13919186 putative RNA polymerase sigma E protein; Provision 85.5
TIGR03697193 NtcA_cyano global nitrogen regulator NtcA, cyanoba 85.35
PF0534465 DUF746: Domain of Unknown Function (DUF746); Inter 85.34
PRK03975141 tfx putative transcriptional regulator; Provisiona 85.33
PRK11923193 algU RNA polymerase sigma factor AlgU; Provisional 85.26
TIGR0284480 spore_III_D sporulation transcriptional regulator 85.08
TIGR02835234 spore_sigmaE RNA polymerase sigma-E factor. Member 85.08
PRK07408256 RNA polymerase sigma factor SigF; Reviewed 84.98
PRK11924179 RNA polymerase sigma factor; Provisional 84.96
PF0104759 MarR: MarR family; InterPro: IPR000835 The MarR-ty 84.94
TIGR02392270 rpoH_proteo alternative sigma factor RpoH. A sigma 84.84
PRK06759154 RNA polymerase factor sigma-70; Validated 84.81
PRK12515189 RNA polymerase sigma factor; Provisional 84.67
PRK12531194 RNA polymerase sigma factor; Provisional 84.56
PRK09637181 RNA polymerase sigma factor SigZ; Provisional 84.51
TIGR02939190 RpoE_Sigma70 RNA polymerase sigma factor RpoE. A s 84.43
PRK12534187 RNA polymerase sigma factor; Provisional 84.39
PRK09645173 RNA polymerase sigma factor SigL; Provisional 84.39
PF0827955 HTH_11: HTH domain; InterPro: IPR013196 Winged hel 84.35
PHA0067578 hypothetical protein 84.32
PF0137187 Trp_repressor: Trp repressor protein; InterPro: IP 84.32
PRK12523172 RNA polymerase sigma factor; Reviewed 84.23
PRK12536181 RNA polymerase sigma factor; Provisional 84.23
PRK12520191 RNA polymerase sigma factor; Provisional 84.14
PF1373055 HTH_36: Helix-turn-helix domain 84.1
PF07374100 DUF1492: Protein of unknown function (DUF1492); In 84.08
PF00872381 Transposase_mut: Transposase, Mutator family; Inte 83.77
TIGR02984189 Sig-70_plancto1 RNA polymerase sigma-70 factor, Pl 83.72
TIGR02959170 SigZ RNA polymerase sigma factor, SigZ family. Thi 83.69
PRK09651172 RNA polymerase sigma factor FecI; Provisional 83.64
COG2739105 Uncharacterized protein conserved in bacteria [Fun 83.56
PRK12541161 RNA polymerase sigma factor; Provisional 83.54
PRK09649185 RNA polymerase sigma factor SigC; Reviewed 83.53
PF13551112 HTH_29: Winged helix-turn helix 83.44
PRK12545201 RNA polymerase sigma factor; Provisional 83.39
PRK12532195 RNA polymerase sigma factor; Provisional 83.31
TIGR02393238 RpoD_Cterm RNA polymerase sigma factor RpoD, C-ter 83.23
TIGR03001244 Sig-70_gmx1 RNA polymerase sigma-70 factor, Myxoco 83.19
PRK12512184 RNA polymerase sigma factor; Provisional 83.02
PRK12543179 RNA polymerase sigma factor; Provisional 82.92
cd0009267 HTH_CRP helix_turn_helix, cAMP Regulatory protein 82.83
PRK12546188 RNA polymerase sigma factor; Provisional 82.82
TIGR02954169 Sig70_famx3 RNA polymerase sigma-70 factor, TIGR02 82.78
PF0032532 Crp: Bacterial regulatory proteins, crp family; In 82.78
PRK12535196 RNA polymerase sigma factor; Provisional 82.77
PRK05572252 sporulation sigma factor SigF; Validated 82.74
PRK12542185 RNA polymerase sigma factor; Provisional 82.63
PRK11753211 DNA-binding transcriptional dual regulator Crp; Pr 82.54
PRK09644165 RNA polymerase sigma factor SigM; Provisional 82.51
smart0034284 HTH_ARAC helix_turn_helix, arabinose operon contro 82.4
PRK09643192 RNA polymerase sigma factor SigM; Reviewed 82.37
PF0933952 HTH_IclR: IclR helix-turn-helix domain; InterPro: 82.37
TIGR02947193 SigH_actino RNA polymerase sigma-70 factor, TIGR02 82.35
PRK05602186 RNA polymerase sigma factor; Reviewed 82.31
PRK06930170 positive control sigma-like factor; Validated 82.29
PRK12540182 RNA polymerase sigma factor; Provisional 82.27
PRK12527159 RNA polymerase sigma factor; Reviewed 82.25
TIGR02846227 spore_sigmaK RNA polymerase sigma-K factor. The sp 82.17
PF01710119 HTH_Tnp_IS630: Transposase; InterPro: IPR002622 Tr 82.13
TIGR02948187 SigW_bacill RNA polymerase sigma-W factor. This si 82.09
PRK06596284 RNA polymerase factor sigma-32; Reviewed 82.01
PRK12526206 RNA polymerase sigma factor; Provisional 81.85
PRK12538233 RNA polymerase sigma factor; Provisional 81.68
PRK12544206 RNA polymerase sigma factor; Provisional 81.65
PRK12539184 RNA polymerase sigma factor; Provisional 81.53
TIGR02980227 SigBFG RNA polymerase sigma-70 factor, sigma-B/F/G 81.46
PRK08583257 RNA polymerase sigma factor SigB; Validated 81.22
TIGR02394285 rpoS_proteo RNA polymerase sigma factor RpoS. A si 81.03
PRK07500289 rpoH2 RNA polymerase factor sigma-32; Reviewed 81.02
PRK06811189 RNA polymerase factor sigma-70; Validated 80.95
PF04297101 UPF0122: Putative helix-turn-helix protein, YlxM / 80.71
PRK09646194 RNA polymerase sigma factor SigK; Reviewed 80.38
TIGR02943188 Sig70_famx1 RNA polymerase sigma-70 factor, TIGR02 80.34
>KOG4585 consensus Predicted transposase [Replication, recombination and repair] Back     alignment and domain information 
Probab=100.00  E-value=2.1e-43  Score=334.56  Aligned_cols=311  Identities=31%  Similarity=0.518  Sum_probs=257.1

Q ss_pred             hcCCCHHHHHHHHHHhccCCccccC-----CCCCHHHHHHHHhhhcccccchhhhhhhcccchhhhhhhhHHHHHHHHHh
Q 016400           46 NFRMDKKVFYKLCDILQSKGLLRHT-----NRIKIEEQLAIFMFIVGHNLRTRAVQELFRYSGETISRHFNNVLNAIMAI  120 (390)
Q Consensus        46 ~frms~~~F~~L~~~L~~~~~~~~~-----~~~~~~~~l~~~L~~L~~~~~~~~l~~~fgis~stv~~~~~~v~~~l~~~  120 (390)
                      .|++++.+|..++............     ..+++...+++.++.++++.+.+.++..||...+|+     .+.......
T Consensus         7 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~fg~~~~~~-----~~~~~~~~~   81 (326)
T KOG4585|consen    7 EFRKSYTTFDKICSLVQSLNVVKNSGFMLSSLLPADTLVAVALWRLKTGESLRTVEKKFGLGQSTC-----KFLEEKEDL   81 (326)
T ss_pred             HHHHHHHHHHHHhhhhhhhhhhcccchhhhccccHHhhhhhhhccccccchHHHHHHHcCCcchhh-----hHHHhhhcc
Confidence            7888999999999987654322111     123388999999999999999999999999999999     555566678


Q ss_pred             hccccCCCCCCCchhhccCCcccCCCccccccccceEEEEEeCCCCCCCCCCCCCCceeeeeeeecCCcceeEeccCccc
Q 016400          121 SLDFFQPPGPDVPPEISLDPRLYPYFKDCVGAVDGIHIPVMVGVDEQGPFRNKSGLLSQNVLAACSFDLKFHYVLAGWEG  200 (390)
Q Consensus       121 ~~~~i~~P~~~~~~~i~~~~~~~~~fp~~iG~IDgt~i~i~~P~~~~~~y~~~k~~~s~~~q~v~d~d~~~~~v~~g~~G  200 (390)
                      +..++.||.......+.+.++.   +|+|+|+||+|||++..|......|.|+  .++.|+|+|||+|++|++|.+||||
T Consensus        82 ~~~~~~~p~~~~~~~i~~~~~~---~~~~~g~~d~~hi~~~~~~~~~~~~~n~--~~~~Nvlav~n~d~~f~~v~vg~~G  156 (326)
T KOG4585|consen   82 APHFLKWPSRRILYEIRERFES---LPNCVGAIDTTHIPIRVPPKSGSVYFNK--EQSKNLLAVCNFDMRFIYVDVGWPG  156 (326)
T ss_pred             cchhhcCchhhhhhhhcccccc---ccchhccccccccceecCcccccccccc--ccchhhhheecCCceEEEEEccCCC
Confidence            9999999997666777665543   9999999999999999999999999988  8899999999999999999999999


Q ss_pred             ccccHHHHHHHHhh-cCCCCCCCCceeeccCCCCCCCCccccccCcccCcccccCCCC-ChhhHHHHHHHHHHHHhHHHH
Q 016400          201 SASDLRVLNSALTR-RNKLQVPEGKYYLVDNKYANMPGFIAPYQAVSYHTNQTTTGYH-PQDAKELFNQRHSLLRNATDR  278 (390)
Q Consensus       201 s~~D~~vl~~sl~~-~~~~~~p~g~~~l~D~gYp~~~~ll~P~~~~~~~~~~~~~~~~-~~~~~~~fN~~~s~~R~~VE~  278 (390)
                      |.||+.|++.++.. ......|. +|+|.|.||++.++++.|+..+.++.-.+..+++ |+..+++||++|+.+|.++|+
T Consensus       157 s~~D~kvl~~~~~~~~~~~~~~~-k~yl~d~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~elFN~rh~~~r~v~e~  235 (326)
T KOG4585|consen  157 SAHDTKVLQDSLLYKRNFPHPPL-KYYLVDSGYPLRPGLLGPIGFPLYSLLMFPYGGPQPTNSQELFNKRHSSLRSVAER  235 (326)
T ss_pred             CccHHHHHHhhcccccccccCCc-cccccccCcccccccccccccccchhhhcccCCCCCCchHHHHhhhhhhHHHHHHH
Confidence            99999999988654 33334455 9999999999999999999999999988887774 889999999999999999999


Q ss_pred             HHHHHHhhchhhhcCCCCCccchhHHHHHHHHHHhhhhccCCCcccccccccCCcccccccCCCCCCCCCCCCCCccccc
Q 016400          279 IFGALKERFPILLSAPPYPLQTQVKLVVAACALHNYIQREKPDDWLFRMYEQDTLLPMAESLLPLEGEQPIVHVDTRALE  358 (390)
Q Consensus       279 ~fg~LK~rf~iL~~~~~~~~~~~~~ii~a~~~LhN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (390)
                      +||+||+||+||.+...+...+..+||.|||+|||++++.+..+..+..++...              .+.    .+...
T Consensus       236 ~fg~lk~rw~il~~~~~~~~~~~~~iV~a~caLHN~~~~~~~~~~~~~~~e~~~--------------d~~----~~~~~  297 (326)
T KOG4585|consen  236 AFGVLKAKWRILQRREKYDLKKLPKIVTACCALHNIIRDSDEEDPDDPKWEKFD--------------DYG----ENVAH  297 (326)
T ss_pred             HHHHhhhhhHHHhhcccccccchHHHHHHHHHHHHHHHhhcccccccccccccc--------------ccc----ccchh
Confidence            999999999999977778899999999999999999999887664433221111              000    01111


Q ss_pred             cccchHHHHHHHHHHHHHHHHHHHHhh
Q 016400          359 FGFQTEQLELASHFRDSIATEMWDDYI  385 (390)
Q Consensus       359 ~~~~~~~~~~~~~~Rd~ia~~lw~~~~  385 (390)
                      .....+.++.++.+|+.|+..||+...
T Consensus       298 ~~~~~~~~~~~~~~r~~l~~~l~~~~~  324 (326)
T KOG4585|consen  298 LRYAPQQRDYMEKIRDNLLSELWNGTR  324 (326)
T ss_pred             cccchhHHHHHHHHHHHHHHHHHhccc
Confidence            233456778899999999999998753

>PF04827 Plant_tran: Plant transposon protein; InterPro: IPR006912 This entry represents a putative Harbinger transposase-derived nuclease, which is thought to have nuclease activity Back     alignment and domain information
>PF13359 DDE_Tnp_4: DDE superfamily endonuclease Back     alignment and domain information
>PF13613 HTH_Tnp_4: Helix-turn-helix of DDE superfamily endonuclease Back     alignment and domain information
>PF13612 DDE_Tnp_1_3: Transposase DDE domain Back     alignment and domain information
>PF01609 DDE_Tnp_1: Transposase DDE domain; InterPro: IPR002559 Autonomous mobile genetic elements such as transposon or insertion sequences (IS) encode an enzyme, transposase, that is required for excising and inserting the mobile element Back     alignment and domain information
>PF13586 DDE_Tnp_1_2: Transposase DDE domain Back     alignment and domain information
>PF13936 HTH_38: Helix-turn-helix domain; PDB: 2W48_A Back     alignment and domain information
>PF04545 Sigma70_r4: Sigma-70, region 4; InterPro: IPR007630 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription Back     alignment and domain information
>PF04218 CENP-B_N: CENP-B N-terminal DNA-binding domain; InterPro: IPR006695 Centromere Protein B (CENP-B) is a DNA-binding protein localized to the centromere Back     alignment and domain information
>PF08281 Sigma70_r4_2: Sigma-70, region 4; InterPro: IPR013249 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription Back     alignment and domain information
>PF02796 HTH_7: Helix-turn-helix domain of resolvase; InterPro: IPR006120 Site-specific recombination plays an important role in DNA rearrangement in prokaryotic organisms Back     alignment and domain information
>PF13384 HTH_23: Homeodomain-like domain; PDB: 2X48_C Back     alignment and domain information
>PF12116 SpoIIID: Stage III sporulation protein D; InterPro: IPR014208 Members of this entry represent the transcriptional regulator SpoIIID, or stage III sporulation protein D Back     alignment and domain information
>PF13518 HTH_28: Helix-turn-helix domain Back     alignment and domain information
>PF05225 HTH_psq: helix-turn-helix, Psq domain; InterPro: IPR007889 This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [] Back     alignment and domain information
>smart00351 PAX Paired Box domain Back     alignment and domain information
>COG3415 Transposase and inactivated derivatives [DNA replication, recombination, and repair] Back     alignment and domain information
>PF13011 LZ_Tnp_IS481: leucine-zipper of insertion element IS481 Back     alignment and domain information
>PF13340 DUF4096: Putative transposase of IS4/5 family (DUF4096) Back     alignment and domain information
>cd00131 PAX Paired Box domain Back     alignment and domain information
>PRK09413 IS2 repressor TnpA; Reviewed Back     alignment and domain information
>PF01527 HTH_Tnp_1: Transposase; InterPro: IPR002514 Transposase proteins are necessary for efficient DNA transposition Back     alignment and domain information
>smart00421 HTH_LUXR helix_turn_helix, Lux Regulon Back     alignment and domain information
>PRK04217 hypothetical protein; Provisional Back     alignment and domain information
>TIGR02531 yecD_yerC TrpR-related protein YerC/YecD Back     alignment and domain information
>cd06171 Sigma70_r4 Sigma70, region (SR) 4 refers to the most C-terminal of four conserved domains found in Escherichia coli (Ec) sigma70, the main housekeeping sigma, and related sigma-factors (SFs) Back     alignment and domain information
>PRK00118 putative DNA-binding protein; Validated Back     alignment and domain information
>PRK09639 RNA polymerase sigma factor SigX; Provisional Back     alignment and domain information
>PF02209 VHP: Villin headpiece domain; InterPro: IPR003128 Villin is an F-actin bundling protein involved in the maintenance of the microvilli of the absorptive epithelia Back     alignment and domain information
>PF13542 HTH_Tnp_ISL3: Helix-turn-helix domain of transposase family ISL3 Back     alignment and domain information
>PRK12529 RNA polymerase sigma factor; Provisional Back     alignment and domain information
>TIGR03879 near_KaiC_dom probable regulatory domain Back     alignment and domain information
>cd06170 LuxR_C_like C-terminal DNA-binding domain of LuxR-like proteins Back     alignment and domain information
>PRK09652 RNA polymerase sigma factor RpoE; Provisional Back     alignment and domain information
>PRK08301 sporulation sigma factor SigE; Reviewed Back     alignment and domain information
>cd00569 HTH_Hin_like Helix-turn-helix domain of Hin and related proteins, a family of DNA-binding domains unique to bacteria and represented by the Hin protein of Salmonella Back     alignment and domain information
>PF12802 MarR_2: MarR family; PDB: 3ECO_B 2QWW_B 3KP6_B 3KP4_B 3KP2_A 3KP5_A 3KP3_B 3KP7_A 3NQO_B 3K0L_B Back     alignment and domain information
>smart00153 VHP Villin headpiece domain Back     alignment and domain information
>PRK12519 RNA polymerase sigma factor; Provisional Back     alignment and domain information
>PF01022 HTH_5: Bacterial regulatory protein, arsR family; InterPro: IPR001845 Bacterial transcription regulatory proteins that bind DNA via a helix-turn-helix (HTH) motif can be grouped into families on the basis of sequence similarities Back     alignment and domain information
>PRK12522 RNA polymerase sigma factor; Provisional Back     alignment and domain information
>PRK05911 RNA polymerase sigma factor sigma-28; Reviewed Back     alignment and domain information
>TIGR02989 Sig-70_gvs1 RNA polymerase sigma-70 factor, Rhodopirellula/Verrucomicrobium family Back     alignment and domain information
>PRK07037 extracytoplasmic-function sigma-70 factor; Validated Back     alignment and domain information
>TIGR02999 Sig-70_X6 RNA polymerase sigma factor, TIGR02999 family Back     alignment and domain information
>TIGR02952 Sig70_famx2 RNA polymerase sigma-70 factor, TIGR02952 family Back     alignment and domain information
>PRK09415 RNA polymerase factor sigma C; Reviewed Back     alignment and domain information
>cd06571 Bac_DnaA_C C-terminal domain of bacterial DnaA proteins Back     alignment and domain information
>PRK09047 RNA polymerase factor sigma-70; Validated Back     alignment and domain information
>PRK12537 RNA polymerase sigma factor; Provisional Back     alignment and domain information
>COG1595 RpoE DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog [Transcription] Back     alignment and domain information
>TIGR00721 tfx DNA-binding protein, Tfx family Back     alignment and domain information
>PF00356 LacI: Bacterial regulatory proteins, lacI family; InterPro: IPR000843 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif Back     alignment and domain information
>PF01325 Fe_dep_repress: Iron dependent repressor, N-terminal DNA binding domain; InterPro: IPR022687 The DtxR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 65 residues present in metalloregulators of the DtxR/MntR family Back     alignment and domain information
>PF04967 HTH_10: HTH DNA binding domain; InterPro: IPR007050 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif Back     alignment and domain information
>PRK12530 RNA polymerase sigma factor; Provisional Back     alignment and domain information
>PF00196 GerE: Bacterial regulatory proteins, luxR family; InterPro: IPR000792 This domain is a DNA-binding, helix-turn-helix (HTH) domain of about 65 amino acids, present in transcription regulators of the LuxR/FixJ family of response regulators Back     alignment and domain information
>PRK12511 RNA polymerase sigma factor; Provisional Back     alignment and domain information
>PF13412 HTH_24: Winged helix-turn-helix DNA-binding; PDB: 1I1G_B 2IA0_B 3I4P_A 2GQQ_A 2L4A_A 2CFX_B 2DBB_B 2EFO_A 2EFQ_A 2PN6_A Back     alignment and domain information
>PRK12528 RNA polymerase sigma factor; Provisional Back     alignment and domain information
>PRK12514 RNA polymerase sigma factor; Provisional Back     alignment and domain information
>PRK05803 sporulation sigma factor SigK; Reviewed Back     alignment and domain information
>PRK12547 RNA polymerase sigma factor; Provisional Back     alignment and domain information
>PRK15320 transcriptional activator SprB; Provisional Back     alignment and domain information
>TIGR02983 SigE-fam_strep RNA polymerase sigma-70 factor, sigma-E family Back     alignment and domain information
>PF13751 DDE_Tnp_1_6: Transposase DDE domain Back     alignment and domain information
>TIGR02985 Sig70_bacteroi1 RNA polymerase sigma-70 factor, Bacteroides expansion family 1 Back     alignment and domain information
>PRK12533 RNA polymerase sigma factor; Provisional Back     alignment and domain information
>PRK12525 RNA polymerase sigma factor; Provisional Back     alignment and domain information
>TIGR01321 TrpR trp operon repressor, proteobacterial Back     alignment and domain information
>TIGR02937 sigma70-ECF RNA polymerase sigma factor, sigma-70 family Back     alignment and domain information
>PRK09642 RNA polymerase sigma factor SigW; Reviewed Back     alignment and domain information
>PRK12516 RNA polymerase sigma factor; Provisional Back     alignment and domain information
>PRK09638 RNA polymerase sigma factor SigY; Reviewed Back     alignment and domain information
>PRK09641 RNA polymerase sigma factor SigW; Provisional Back     alignment and domain information
>PRK12524 RNA polymerase sigma factor; Provisional Back     alignment and domain information
>TIGR02950 SigM_subfam RNA polymerase sigma factor, SigM family Back     alignment and domain information
>PRK13919 putative RNA polymerase sigma E protein; Provisional Back     alignment and domain information
>TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial Back     alignment and domain information
>PF05344 DUF746: Domain of Unknown Function (DUF746); InterPro: IPR008008 This is a short conserved region found in some transposons Back     alignment and domain information
>PRK03975 tfx putative transcriptional regulator; Provisional Back     alignment and domain information
>PRK11923 algU RNA polymerase sigma factor AlgU; Provisional Back     alignment and domain information
>TIGR02844 spore_III_D sporulation transcriptional regulator SpoIIID Back     alignment and domain information
>TIGR02835 spore_sigmaE RNA polymerase sigma-E factor Back     alignment and domain information
>PRK07408 RNA polymerase sigma factor SigF; Reviewed Back     alignment and domain information
>PRK11924 RNA polymerase sigma factor; Provisional Back     alignment and domain information
>PF01047 MarR: MarR family; InterPro: IPR000835 The MarR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 135 amino acids present in transcription regulators of the MarR/SlyA family, involved in the development of antibiotic resistance Back     alignment and domain information
>TIGR02392 rpoH_proteo alternative sigma factor RpoH Back     alignment and domain information
>PRK06759 RNA polymerase factor sigma-70; Validated Back     alignment and domain information
>PRK12515 RNA polymerase sigma factor; Provisional Back     alignment and domain information
>PRK12531 RNA polymerase sigma factor; Provisional Back     alignment and domain information
>PRK09637 RNA polymerase sigma factor SigZ; Provisional Back     alignment and domain information
>TIGR02939 RpoE_Sigma70 RNA polymerase sigma factor RpoE Back     alignment and domain information
>PRK12534 RNA polymerase sigma factor; Provisional Back     alignment and domain information
>PRK09645 RNA polymerase sigma factor SigL; Provisional Back     alignment and domain information
>PF08279 HTH_11: HTH domain; InterPro: IPR013196 Winged helix DNA-binding proteins share a related winged helix-turn-helix DNA-binding motif, where the "wings", or loops, are small beta-sheets Back     alignment and domain information
>PHA00675 hypothetical protein Back     alignment and domain information
>PF01371 Trp_repressor: Trp repressor protein; InterPro: IPR000831 The Trp repressor (TrpR) binds to at least five operators in the Escherichia coli genome, repressing gene expression Back     alignment and domain information
>PRK12523 RNA polymerase sigma factor; Reviewed Back     alignment and domain information
>PRK12536 RNA polymerase sigma factor; Provisional Back     alignment and domain information
>PRK12520 RNA polymerase sigma factor; Provisional Back     alignment and domain information
>PF13730 HTH_36: Helix-turn-helix domain Back     alignment and domain information
>PF07374 DUF1492: Protein of unknown function (DUF1492); InterPro: IPR010861 This entry is represented by Streptococcus phage 7201, Orf19 Back     alignment and domain information
>PF00872 Transposase_mut: Transposase, Mutator family; InterPro: IPR001207 Autonomous mobile genetic elements such as transposon or insertion sequences (IS) encode an enzyme, transposase, that is required for excising and inserting the mobile element Back     alignment and domain information
>TIGR02984 Sig-70_plancto1 RNA polymerase sigma-70 factor, Planctomycetaceae-specific subfamily 1 Back     alignment and domain information
>TIGR02959 SigZ RNA polymerase sigma factor, SigZ family Back     alignment and domain information
>PRK09651 RNA polymerase sigma factor FecI; Provisional Back     alignment and domain information
>COG2739 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>PRK12541 RNA polymerase sigma factor; Provisional Back     alignment and domain information
>PRK09649 RNA polymerase sigma factor SigC; Reviewed Back     alignment and domain information
>PF13551 HTH_29: Winged helix-turn helix Back     alignment and domain information
>PRK12545 RNA polymerase sigma factor; Provisional Back     alignment and domain information
>PRK12532 RNA polymerase sigma factor; Provisional Back     alignment and domain information
>TIGR02393 RpoD_Cterm RNA polymerase sigma factor RpoD, C-terminal domain Back     alignment and domain information
>TIGR03001 Sig-70_gmx1 RNA polymerase sigma-70 factor, Myxococcales family 1 Back     alignment and domain information
>PRK12512 RNA polymerase sigma factor; Provisional Back     alignment and domain information
>PRK12543 RNA polymerase sigma factor; Provisional Back     alignment and domain information
>cd00092 HTH_CRP helix_turn_helix, cAMP Regulatory protein C-terminus; DNA binding domain of prokaryotic regulatory proteins belonging to the catabolite activator protein family Back     alignment and domain information
>PRK12546 RNA polymerase sigma factor; Provisional Back     alignment and domain information
>TIGR02954 Sig70_famx3 RNA polymerase sigma-70 factor, TIGR02954 family Back     alignment and domain information
>PF00325 Crp: Bacterial regulatory proteins, crp family; InterPro: IPR001808 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif Back     alignment and domain information
>PRK12535 RNA polymerase sigma factor; Provisional Back     alignment and domain information
>PRK05572 sporulation sigma factor SigF; Validated Back     alignment and domain information
>PRK12542 RNA polymerase sigma factor; Provisional Back     alignment and domain information
>PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional Back     alignment and domain information
>PRK09644 RNA polymerase sigma factor SigM; Provisional Back     alignment and domain information
>smart00342 HTH_ARAC helix_turn_helix, arabinose operon control protein Back     alignment and domain information
>PRK09643 RNA polymerase sigma factor SigM; Reviewed Back     alignment and domain information
>PF09339 HTH_IclR: IclR helix-turn-helix domain; InterPro: IPR005471 The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities Back     alignment and domain information
>TIGR02947 SigH_actino RNA polymerase sigma-70 factor, TIGR02947 family Back     alignment and domain information
>PRK05602 RNA polymerase sigma factor; Reviewed Back     alignment and domain information
>PRK06930 positive control sigma-like factor; Validated Back     alignment and domain information
>PRK12540 RNA polymerase sigma factor; Provisional Back     alignment and domain information
>PRK12527 RNA polymerase sigma factor; Reviewed Back     alignment and domain information
>TIGR02846 spore_sigmaK RNA polymerase sigma-K factor Back     alignment and domain information
>PF01710 HTH_Tnp_IS630: Transposase; InterPro: IPR002622 Transposase proteins are necessary for efficient DNA transposition Back     alignment and domain information
>TIGR02948 SigW_bacill RNA polymerase sigma-W factor Back     alignment and domain information
>PRK06596 RNA polymerase factor sigma-32; Reviewed Back     alignment and domain information
>PRK12526 RNA polymerase sigma factor; Provisional Back     alignment and domain information
>PRK12538 RNA polymerase sigma factor; Provisional Back     alignment and domain information
>PRK12544 RNA polymerase sigma factor; Provisional Back     alignment and domain information
>PRK12539 RNA polymerase sigma factor; Provisional Back     alignment and domain information
>TIGR02980 SigBFG RNA polymerase sigma-70 factor, sigma-B/F/G subfamily Back     alignment and domain information
>PRK08583 RNA polymerase sigma factor SigB; Validated Back     alignment and domain information
>TIGR02394 rpoS_proteo RNA polymerase sigma factor RpoS Back     alignment and domain information
>PRK07500 rpoH2 RNA polymerase factor sigma-32; Reviewed Back     alignment and domain information
>PRK06811 RNA polymerase factor sigma-70; Validated Back     alignment and domain information
>PF04297 UPF0122: Putative helix-turn-helix protein, YlxM / p13 like; InterPro: IPR007394 Members of this family are predicted to contain a helix-turn-helix motif, for example residues 37-55 in Mycoplasma mycoides p13 (O05290 from SWISSPROT) Back     alignment and domain information
>PRK09646 RNA polymerase sigma factor SigK; Reviewed Back     alignment and domain information
>TIGR02943 Sig70_famx1 RNA polymerase sigma-70 factor, TIGR02943 family Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query390
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-10
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 61.0 bits (147), Expect = 3e-10
 Identities = 61/398 (15%), Positives = 110/398 (27%), Gaps = 137/398 (34%)

Query: 32  VDEVLNGQSERCLENF----RM-----DKKVFYKLCDILQSKGLLRHTNRIKIE------ 76
           +  V   Q+ +    F    ++      K+V     D L +      T  I ++      
Sbjct: 250 LLNV---QNAKAWNAFNLSCKILLTTRFKQVT----DFLSAA----TTTHISLDHHSMTL 298

Query: 77  ---EQLAIFMFIVGHN---LRTRAVQ----------ELFRYSGETIS--RHFN-NVLNAI 117
              E  ++ +  +      L    +           E  R    T    +H N + L  I
Sbjct: 299 TPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTI 358

Query: 118 MAISLDFFQPPGPDVPPEISLDPRLY-PYFKDCVGAV--DGIHIPVMV------GVDEQG 168
           +  SL+              L+P  Y   F     +V     HIP ++       V +  
Sbjct: 359 IESSLN-------------VLEPAEYRKMFDRL--SVFPPSAHIPTILLSLIWFDVIKSD 403

Query: 169 P------FRNKSGLLSQNV------LAACSFDLKFHYVLAGWEGSASDLRVLNSALTRRN 216
                      S L+ +        + +   +LK             +   L+ ++   +
Sbjct: 404 VMVVVNKLHKYS-LVEKQPKESTISIPSIYLELKVK---------LENEYALHRSI--VD 451

Query: 217 KLQVPEGKYYLVDNKYANMPGFIAPYQAVSYHTNQTTTGYHPQDAKELFNQRHSLLRNAT 276
              +P+  +   D     +  +   +            G+H ++ +    +R +L R   
Sbjct: 452 HYNIPK-TFDSDDLIPPYLDQYFYSH-----------IGHHLKNIEH--PERMTLFR--- 494

Query: 277 DRIFGALKERF----------PILLSAPPYPLQTQVKLVVAACALHNYIQREKPDDWLFR 326
             +F  L  RF              S        Q+K          YI    P      
Sbjct: 495 -MVF--LDFRFLEQKIRHDSTAWNASGSILNTLQQLKF------YKPYICDNDPK----- 540

Query: 327 MYEQDTLLPMAESLLPLEGEQPIVHVDTRALEFGFQTE 364
            YE+  L+      LP   E  I    T  L      E
Sbjct: 541 -YER--LVNAILDFLPKIEENLICSKYTDLLRIALMAE 575

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query390
2w7n_A101 TRFB transcriptional repressor protein; INCP, plas 95.68
1jhg_A101 Trp operon repressor; complex (regulatory protein- 95.16
2o8x_A70 Probable RNA polymerase sigma-C factor; promoter r 95.09
1tc3_C51 Protein (TC3 transposase); DNA binding, helix-turn 95.08
2glo_A59 Brinker CG9653-PA; protein-DNA complex, helix-turn 94.65
2jn6_A97 Protein CGL2762, transposase; GFT PSI-2, protein s 94.34
1tty_A87 Sigma-A, RNA polymerase sigma factor RPOD; helix-t 94.18
3hug_A92 RNA polymerase sigma factor; ECF sigma factor, zin 94.16
2p7v_B68 Sigma-70, RNA polymerase sigma factor RPOD; RSD, r 94.14
1ku3_A73 Sigma factor SIGA; helix-turn-helix, transcription 94.04
1jko_C52 HIN recombinase, DNA-invertase HIN; water-mediated 92.65
3t72_q99 RNA polymerase sigma factor RPOD, DNA-directed RN 92.56
1fse_A74 GERE; helix-turn-helix DNA-binding protein transcr 92.31
2jrt_A95 Uncharacterized protein; solution, structure, NESG 92.3
2elh_A87 CG11849-PA, LD40883P; structural genomics, NPPSFA, 92.27
1p4w_A99 RCSB; solution structure, DNA binding domain, DNA 92.15
3c57_A95 Two component transcriptional regulatory protein; 91.75
1je8_A82 Nitrate/nitrite response regulator protein NARL; p 91.66
1s7o_A113 Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SP 91.49
2x48_A55 CAG38821; archeal virus, viral protein; 2.60A {Sul 91.46
1wy3_A35 Villin; structural protein; HET: NLE; 0.95A {Synth 91.07
1xsv_A113 Hypothetical UPF0122 protein SAV1236; helix-turn-h 91.06
2jpc_A61 SSRB; DNA binding protein, structural genomics, PS 90.9
1pdn_C128 Protein (PRD paired); protein-DNA complex, double 90.3
1und_A37 Advillin, P92; actin binding, F-actin binding, cyt 90.21
1k78_A149 Paired box protein PAX5; paired domain, ETS domain 90.16
2rn7_A108 IS629 ORFA; helix, all alpha, unknown function, st 89.91
1or7_A194 Sigma-24, RNA polymerase sigma-E factor; regulatio 89.84
1x3u_A79 Transcriptional regulatory protein FIXJ; helix-tur 89.83
3ulq_B90 Transcriptional regulatory protein COMA; tetratric 89.47
2rnj_A91 Response regulator protein VRAR; HTH LUXR-type dom 89.21
1rp3_A239 RNA polymerase sigma factor sigma-28 (FLIA); trans 88.74
1u78_A141 TC3 transposase, transposable element TC3 transpos 88.69
1hlv_A131 CENP-B, major centromere autoantigen B; helix-turn 88.28
2lfw_A157 PHYR sigma-like domain; signal transduction, respo 87.52
3frw_A107 Putative Trp repressor protein; structural genomic 87.1
1iuf_A144 Centromere ABP1 protein; riken structural genomics 86.93
3mzy_A164 RNA polymerase sigma-H factor; PSI, MCSG, structur 85.72
2q1z_A184 RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc 85.71
2k27_A159 Paired box protein PAX-8; paired domain, solution 85.37
1u78_A141 TC3 transposase, transposable element TC3 transpos 84.92
1j1v_A94 Chromosomal replication initiator protein DNAA, 5' 84.47
3kor_A119 Possible Trp repressor; putative DNA-binding Trp r 83.5
1qzp_A68 Dematin; villin headpiece, actin binding domain, p 83.17
1zyb_A232 Transcription regulator, CRP family; NP_813211.1, 83.01
1qgp_A77 Protein (double stranded RNA adenosine deaminase); 82.86
2d1h_A109 ST1889, 109AA long hypothetical transcriptional re 82.86
2lkp_A119 Transcriptional regulator, ARSR family; symmetric 82.48
2oa4_A101 SIR5; structure, structural genomics, PSI-2, prote 82.38
2heo_A67 Z-DNA binding protein 1; protein DLM1-Z-DNA comple 82.3
1zx4_A192 P1 PARB, plasmid partition PAR B protein, PARB; tr 82.17
1oyi_A82 Double-stranded RNA-binding protein; (alpha+beta) 82.0
1r1u_A106 CZRA, repressor protein; zinc, DNA binding, transc 81.31
3la7_A243 Global nitrogen regulator; activator, DNA-binding, 81.31
2jt1_A77 PEFI protein; solution structure, winged helix-tur 80.76
3r0a_A123 Putative transcriptional regulator; structural gen 80.33
1yu8_X67 Villin; alpha helix, 3-10 helix, structural protei 80.23
2qvo_A95 Uncharacterized protein AF_1382; PSI, structural g 80.02
>2w7n_A TRFB transcriptional repressor protein; INCP, plasmid, repressor, DNA-binding, transcription/DNA; HET: BRU; 1.85A {Escherichia coli} Back     alignment and structure
Probab=95.68  E-value=0.014  Score=44.94  Aligned_cols=60  Identities=12%  Similarity=0.129  Sum_probs=47.3

Q ss_pred             CCCHHHHHHHHHHhccCCccccCCCCCHHHHHHHHhhhcccccchhhhhhhcccchhhhhhhhHHHHHHHH
Q 016400           48 RMDKKVFYKLCDILQSKGLLRHTNRIKIEEQLAIFMFIVGHNLRTRAVQELFRYSGETISRHFNNVLNAIM  118 (390)
Q Consensus        48 rms~~~F~~L~~~L~~~~~~~~~~~~~~~~~l~~~L~~L~~~~~~~~l~~~fgis~stv~~~~~~v~~~l~  118 (390)
                      |||.+.|+.+...++          ++- ..+-++=.|+-.|.++.++|..+|+|+++|++.+.+.-....
T Consensus         4 rmT~~eFe~~~~~l~----------~~~-~~~~~A~lyYv~g~tQ~eIA~~lGiSR~~VsrlL~~Ar~~~~   63 (101)
T 2w7n_A            4 RLTESQFQEAIQGLE----------VGQ-QTIEIARGVLVDGKPQATFATSLGLTRGAVSQAVHRVWAAFE   63 (101)
T ss_dssp             CCCHHHHHHHHTTCC----------CCH-HHHHHHHHHHTTCCCHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHccCC----------hHH-HHHHHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHh
Confidence            799999999986662          222 334455556677999999999999999999999999877653
>1jhg_A Trp operon repressor; complex (regulatory protein-peptide), DNA-binding regulatory complex (regulatory protein-peptide) complex; HET: TRP; 1.30A {Escherichia coli} SCOP: a.4.12.1 PDB: 1co0_A* 1mi7_R 1p6z_R 1wrp_R* 1zt9_A* 2oz9_R* 3ssw_R 3wrp_A 1rcs_A* 1wrs_R* 1wrt_R 2xdi_A 3ssx_R* 1trr_A* 1tro_A* Back     alignment and structure
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis} Back     alignment and structure
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2 Back     alignment and structure
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster} Back     alignment and structure
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19 Back     alignment and structure
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2 Back     alignment and structure
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis} Back     alignment and structure
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2 Back     alignment and structure
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A* Back     alignment and structure
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C Back     alignment and structure
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B Back     alignment and structure
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2 Back     alignment and structure
>2jrt_A Uncharacterized protein; solution, structure, NESG, PSI, target RHR5, structural genomics, protein structure initiative; NMR {Rhodobacter sphaeroides} Back     alignment and structure
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster} Back     alignment and structure
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2 Back     alignment and structure
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A Back     alignment and structure
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A Back     alignment and structure
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3 Back     alignment and structure
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid} Back     alignment and structure
>1wy3_A Villin; structural protein; HET: NLE; 0.95A {Synthetic} PDB: 1wy4_A 1yri_A* 1yrf_A* 2f4k_A* 1vii_A 3trv_A* 3trw_A 3tjw_B* 3trv_B* 3try_A* 2ppz_A 2jm0_A* 3tjw_A* 3iur_B* Back     alignment and structure
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3 Back     alignment and structure
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium} Back     alignment and structure
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5 Back     alignment and structure
>1und_A Advillin, P92; actin binding, F-actin binding, cytoskeleton, headpiece subdomain; NMR {Homo sapiens} SCOP: a.14.1.1 Back     alignment and structure
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A Back     alignment and structure
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri} Back     alignment and structure
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A Back     alignment and structure
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti} Back     alignment and structure
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A Back     alignment and structure
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus} Back     alignment and structure
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A Back     alignment and structure
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2 Back     alignment and structure
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A Back     alignment and structure
>2lfw_A PHYR sigma-like domain; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP} Back     alignment and structure
>3frw_A Putative Trp repressor protein; structural genomics, APC21159, PSI-2, P structure initiative; 2.05A {Ruminococcus obeum atcc 29174} PDB: 3g1c_A Back     alignment and structure
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7 Back     alignment and structure
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp} Back     alignment and structure
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens} Back     alignment and structure
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2 Back     alignment and structure
>1j1v_A Chromosomal replication initiator protein DNAA, 5'-D(*CP*CP*TP*GP*TP*GP*GP*AP*TP*AP*AP*CP*A)-3'; protein-DNA complex; 2.10A {Escherichia coli} SCOP: a.4.12.2 Back     alignment and structure
>3kor_A Possible Trp repressor; putative DNA-binding Trp repressor, TRPR like protein, struc genomics, transcription; 1.60A {Staphylococcus aureus} Back     alignment and structure
>1qzp_A Dematin; villin headpiece, actin binding domain, protein binding; NMR {Homo sapiens} SCOP: a.14.1.1 PDB: 1zv6_A Back     alignment and structure
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2 Back     alignment and structure
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19 Back     alignment and structure
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50 Back     alignment and structure
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis} Back     alignment and structure
>2oa4_A SIR5; structure, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Silicibacter pomeroyi} SCOP: a.4.12.3 Back     alignment and structure
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A Back     alignment and structure
>1zx4_A P1 PARB, plasmid partition PAR B protein, PARB; translation; HET: CIT; 2.98A {Enterobacteria phage P1} PDB: 2ntz_A Back     alignment and structure
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19 Back     alignment and structure
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A Back     alignment and structure
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A* Back     alignment and structure
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2} Back     alignment and structure
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei} Back     alignment and structure
>1yu8_X Villin; alpha helix, 3-10 helix, structural protein; 1.45A {Gallus gallus} SCOP: a.14.1.1 PDB: 1qqv_A 1yu5_X 2rjx_A 2rjy_A 1yu7_X 2rjv_A 2rjw_A 3nkj_A 3myc_A 3mya_A 3mye_X 1unc_A Back     alignment and structure
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query390
d1ijwc_47 HIN recombinase (DNA-binding domain) {Synthetic} 96.81
d1hlva166 DNA-binding domain of centromere binding protein B 95.32
d1rp3a271 Sigma factor sigma-28 (FliA) {Aquifex aeolicus [Ta 95.27
d1or7a168 SigmaE factor (RpoE) {Escherichia coli [TaxId: 562 94.81
d1s7oa_106 Hypothetical protein SPy1201 {Streptococcus pyogen 94.15
d2jn6a189 Uncharacterized protein Cgl2762 {Corynebacterium g 93.1
d1k78a163 Pax-5 {Human (Homo sapiens) [TaxId: 9606]} 92.98
d1xsva_106 Hypothetical protein SAV1236 {Staphylococcus aureu 92.58
d1pdnc_123 Paired protein (prd) {Fruit fly (Drosophila melano 91.7
d1i5za169 Catabolite gene activator protein (CAP), C-termina 91.03
d1unda_36 Advillin {Human (Homo sapiens) [TaxId: 9606]} 90.72
d1yu8x135 Villin {Chicken (Gallus gallus) [TaxId: 9031]} 90.66
d1l3la165 Quorum-sensing transcription factor TraR, C-termin 90.38
d1a04a167 Nitrate/nitrite response regulator (NarL) {Escheri 90.37
d1ft9a180 CO-sensing protein CooA, C-terminal domain {Rhodos 90.33
d1fsea_67 Germination protein GerE {Bacillus subtilis [TaxId 89.58
d1yioa170 Response regulatory protein StyR, C-terminal domai 88.67
d1p4wa_87 Transcriptional regulator RcsB {Erwinia amylovora 87.9
d1ku3a_61 Sigma70 (SigA, RpoD) {Thermus aquaticus [TaxId: 27 87.64
d1zyba173 Probable transcription regulator BT4300, C-termina 87.35
d2gaua181 Transcriptional regulator PG0396, C-terminal domai 86.98
d3e5ua180 Chlorophenol reduction protein CprK {Desulfitobact 86.65
d2hsga157 Glucose-resistance amylase regulator CcpA, N-termi 85.87
d1r1ta_98 SmtB repressor {Cyanobacteria (Synechococcus), pcc 85.58
d1qpza157 Purine repressor (PurR), N-terminal domain {Escher 85.11
d1aisb295 Transcription factor IIB (TFIIB), core domain {Arc 84.43
d2zcwa182 Transcriptional regulator TTHA1359, C-terminal dom 84.23
d2a61a1139 Transcriptional regulator TM0710 {Thermotoga marit 83.31
d1aisb198 Transcription factor IIB (TFIIB), core domain {Arc 83.21
d1vola2109 Transcription factor IIB (TFIIB), core domain {Hum 83.02
d2d1ha1109 Hypothetical transcriptional regulator ST1889 {Sul 82.59
d2p7vb168 Sigma70 (SigA, RpoD) {Escherichia coli [TaxId: 562 82.33
d1uxda_59 Fructose repressor (FruR), N-terminal domain {Esch 81.58
d1efaa159 Lac repressor (LacR), N-terminal domain {Escherich 81.53
d1r1ua_94 Metal-sensing transcriptional repressor CzrA {Stap 81.4
d1qzpa_68 Dematin {Human (Homo sapiens) [TaxId: 9606]} 81.0
>d1ijwc_ a.4.1.2 (C:) HIN recombinase (DNA-binding domain) {Synthetic} Back     information, alignment and structure
class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Recombinase DNA-binding domain
domain: HIN recombinase (DNA-binding domain)
species: Synthetic

Probab=96.81  E-value=0.0003  Score=44.62  Aligned_cols=35  Identities=11%  Similarity=0.159  Sum_probs=32.4

Q ss_pred             HHHHHHHhhhcccccchhhhhhhcccchhhhhhhh
Q 016400           76 EEQLAIFMFIVGHNLRTRAVQELFRYSGETISRHF  110 (390)
Q Consensus        76 ~~~l~~~L~~L~~~~~~~~l~~~fgis~stv~~~~  110 (390)
                      ++|+..+..+++.|.+..+||..||||++|++|++
T Consensus         8 ~~q~~~a~~l~~~G~s~~~iA~~~gVSr~TiYry~   42 (47)
T d1ijwc_           8 KHEQEQISRLLEKGHPRQQLAIIFGIGVSTLYRYF   42 (47)
T ss_dssp             HHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHS
T ss_pred             HHHHHHHHHHHHCCCCHHHHHHHHCcCHHHHHhhC
Confidence            47888888999999999999999999999999986
>d1hlva1 a.4.1.7 (A:1-66) DNA-binding domain of centromere binding protein B (CENP-B) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1rp3a2 a.4.13.2 (A:164-234) Sigma factor sigma-28 (FliA) {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1or7a1 a.4.13.2 (A:120-187) SigmaE factor (RpoE) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1s7oa_ a.4.13.3 (A:) Hypothetical protein SPy1201 {Streptococcus pyogenes [TaxId: 1314]} Back     information, alignment and structure
>d2jn6a1 a.4.1.19 (A:1-89) Uncharacterized protein Cgl2762 {Corynebacterium glutamicum [TaxId: 1718]} Back     information, alignment and structure
>d1k78a1 a.4.1.5 (A:19-81) Pax-5 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xsva_ a.4.13.3 (A:) Hypothetical protein SAV1236 {Staphylococcus aureus, strain Mu50 / ATCC 700699 [TaxId: 1280]} Back     information, alignment and structure
>d1pdnc_ a.4.1.5 (C:) Paired protein (prd) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1i5za1 a.4.5.4 (A:138-206) Catabolite gene activator protein (CAP), C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1unda_ a.14.1.1 (A:) Advillin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1yu8x1 a.14.1.1 (X:42-76) Villin {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d1l3la1 a.4.6.2 (A:170-234) Quorum-sensing transcription factor TraR, C-terminal domain {Agrobacterium tumefaciens [TaxId: 358]} Back     information, alignment and structure
>d1a04a1 a.4.6.2 (A:150-216) Nitrate/nitrite response regulator (NarL) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ft9a1 a.4.5.4 (A:134-213) CO-sensing protein CooA, C-terminal domain {Rhodospirillum rubrum [TaxId: 1085]} Back     information, alignment and structure
>d1fsea_ a.4.6.2 (A:) Germination protein GerE {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1yioa1 a.4.6.2 (A:131-200) Response regulatory protein StyR, C-terminal domain {Pseudomonas fluorescens [TaxId: 294]} Back     information, alignment and structure
>d1p4wa_ a.4.6.2 (A:) Transcriptional regulator RcsB {Erwinia amylovora [TaxId: 552]} Back     information, alignment and structure
>d1ku3a_ a.4.13.2 (A:) Sigma70 (SigA, RpoD) {Thermus aquaticus [TaxId: 271]} Back     information, alignment and structure
>d1zyba1 a.4.5.4 (A:148-220) Probable transcription regulator BT4300, C-terminal domain {Bacteroides thetaiotaomicron [TaxId: 818]} Back     information, alignment and structure
>d2gaua1 a.4.5.4 (A:152-232) Transcriptional regulator PG0396, C-terminal domain {Porphyromonas gingivalis [TaxId: 837]} Back     information, alignment and structure
>d3e5ua1 a.4.5.4 (A:148-227) Chlorophenol reduction protein CprK {Desulfitobacterium hafniense [TaxId: 49338]} Back     information, alignment and structure
>d2hsga1 a.35.1.5 (A:2-58) Glucose-resistance amylase regulator CcpA, N-terminal domain {Bacillus megaterium [TaxId: 1404]} Back     information, alignment and structure
>d1r1ta_ a.4.5.5 (A:) SmtB repressor {Cyanobacteria (Synechococcus), pcc7942 [TaxId: 1129]} Back     information, alignment and structure
>d1qpza1 a.35.1.5 (A:2-58) Purine repressor (PurR), N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1aisb2 a.74.1.2 (B:1206-1300) Transcription factor IIB (TFIIB), core domain {Archaeon Pyrococcus woesei [TaxId: 2262]} Back     information, alignment and structure
>d2a61a1 a.4.5.28 (A:5-143) Transcriptional regulator TM0710 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1aisb1 a.74.1.2 (B:1108-1205) Transcription factor IIB (TFIIB), core domain {Archaeon Pyrococcus woesei [TaxId: 2262]} Back     information, alignment and structure
>d1vola2 a.74.1.2 (A:208-316) Transcription factor IIB (TFIIB), core domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2d1ha1 a.4.5.50 (A:1-109) Hypothetical transcriptional regulator ST1889 {Sulfolobus tokodaii [TaxId: 111955]} Back     information, alignment and structure
>d2p7vb1 a.4.13.2 (B:546-613) Sigma70 (SigA, RpoD) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1uxda_ a.35.1.5 (A:) Fructose repressor (FruR), N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1efaa1 a.35.1.5 (A:2-60) Lac repressor (LacR), N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1r1ua_ a.4.5.5 (A:) Metal-sensing transcriptional repressor CzrA {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1qzpa_ a.14.1.1 (A:) Dematin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure